Query 013168
Match_columns 448
No_of_seqs 197 out of 1932
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 01:05:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013168.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013168hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 3.1E-54 6.8E-59 425.9 47.3 396 31-430 12-452 (455)
2 PRK10189 MATE family multidrug 100.0 9.9E-51 2.2E-55 404.6 49.6 391 33-426 26-467 (478)
3 PRK00187 multidrug efflux prot 100.0 3.8E-48 8.1E-53 385.9 49.5 391 31-424 5-447 (464)
4 PRK01766 multidrug efflux prot 100.0 7E-47 1.5E-51 377.8 49.2 396 28-426 4-447 (456)
5 PRK10367 DNA-damage-inducible 100.0 5.6E-46 1.2E-50 367.1 46.2 383 32-425 5-434 (441)
6 PRK09575 vmrA multidrug efflux 100.0 1.5E-45 3.2E-50 366.7 46.3 388 32-425 8-439 (453)
7 KOG1347 Uncharacterized membra 100.0 5.2E-40 1.1E-44 322.0 29.0 412 28-441 20-472 (473)
8 TIGR00797 matE putative efflux 100.0 9.5E-30 2.1E-34 245.0 36.4 281 44-327 1-284 (342)
9 TIGR01695 mviN integral membra 100.0 7.7E-28 1.7E-32 243.9 46.1 371 38-421 2-428 (502)
10 TIGR02900 spore_V_B stage V sp 100.0 5.2E-28 1.1E-32 244.3 40.4 373 39-420 2-433 (488)
11 PRK15099 O-antigen translocase 100.0 5.4E-25 1.2E-29 217.4 39.0 367 38-420 3-411 (416)
12 PF03023 MVIN: MviN-like prote 99.9 4.6E-21 9.9E-26 190.0 44.7 345 66-421 5-403 (451)
13 PRK00187 multidrug efflux prot 99.9 1.4E-22 3E-27 202.3 25.9 208 30-238 230-444 (464)
14 PRK01766 multidrug efflux prot 99.9 8.3E-22 1.8E-26 197.1 25.1 208 31-239 234-443 (456)
15 COG0534 NorM Na+-driven multid 99.9 2.3E-21 5E-26 192.0 26.7 213 27-241 232-446 (455)
16 PRK10189 MATE family multidrug 99.9 3.2E-21 6.9E-26 192.7 27.4 211 31-242 254-466 (478)
17 COG0728 MviN Uncharacterized m 99.9 1.6E-18 3.5E-23 169.4 44.0 377 37-421 8-437 (518)
18 PRK09575 vmrA multidrug efflux 99.9 4E-21 8.7E-26 191.5 26.1 207 29-238 227-436 (453)
19 TIGR01695 mviN integral membra 99.9 7.2E-19 1.6E-23 178.3 29.3 206 31-238 218-428 (502)
20 PRK10459 colanic acid exporter 99.8 5.9E-17 1.3E-21 163.8 40.6 358 36-420 5-404 (492)
21 PRK10367 DNA-damage-inducible 99.8 7.5E-18 1.6E-22 166.9 26.1 200 32-238 228-431 (441)
22 PF01554 MatE: MatE; InterPro 99.8 2.6E-19 5.5E-24 153.0 6.2 160 44-204 1-162 (162)
23 PF03023 MVIN: MviN-like prote 99.8 4.8E-16 1E-20 154.2 29.9 211 27-239 189-404 (451)
24 TIGR02900 spore_V_B stage V sp 99.8 1.6E-16 3.5E-21 160.6 25.2 203 30-237 219-433 (488)
25 COG2244 RfbX Membrane protein 99.7 8.2E-15 1.8E-19 147.8 33.8 348 33-403 3-394 (480)
26 COG0728 MviN Uncharacterized m 99.7 1.4E-14 3.1E-19 141.9 33.7 213 25-239 221-438 (518)
27 PRK15099 O-antigen translocase 99.7 1E-15 2.2E-20 151.3 24.5 202 29-237 208-411 (416)
28 PRK10459 colanic acid exporter 99.7 4.1E-14 8.8E-19 143.1 28.0 201 31-237 202-404 (492)
29 COG2244 RfbX Membrane protein 99.6 7.9E-14 1.7E-18 140.6 24.8 191 27-223 204-396 (480)
30 PF01943 Polysacc_synt: Polysa 99.6 5.1E-12 1.1E-16 117.2 31.1 270 39-326 2-273 (273)
31 TIGR00797 matE putative efflux 99.4 6E-12 1.3E-16 121.1 17.4 133 28-161 208-341 (342)
32 PF13440 Polysacc_synt_3: Poly 99.3 3.6E-09 7.7E-14 97.0 29.6 245 55-324 3-250 (251)
33 PF01554 MatE: MatE; InterPro 99.2 7.7E-11 1.7E-15 100.4 7.7 121 265-387 1-162 (162)
34 KOG1347 Uncharacterized membra 99.0 2.3E-09 4.9E-14 106.1 10.4 208 32-240 243-454 (473)
35 PF07260 ANKH: Progressive ank 98.7 3.5E-05 7.5E-10 70.1 26.8 251 33-290 8-269 (345)
36 PF04506 Rft-1: Rft protein; 98.5 1.5E-05 3.3E-10 80.4 20.6 204 34-238 251-470 (549)
37 PF14667 Polysacc_synt_C: Poly 98.5 1.3E-05 2.9E-10 66.7 15.9 80 158-239 2-81 (146)
38 PF04506 Rft-1: Rft protein; 98.2 0.0025 5.5E-08 64.6 27.6 163 257-421 253-470 (549)
39 KOG2864 Nuclear division RFT1 98.0 0.0002 4.3E-09 68.2 15.4 203 35-239 238-450 (530)
40 PF01943 Polysacc_synt: Polysa 97.4 0.0011 2.5E-08 61.0 10.4 72 32-104 201-273 (273)
41 PF14667 Polysacc_synt_C: Poly 97.4 0.0013 2.7E-08 54.6 9.7 79 340-421 2-80 (146)
42 KOG2864 Nuclear division RFT1 96.8 0.53 1.2E-05 45.6 29.4 101 318-421 346-449 (530)
43 PF07260 ANKH: Progressive ank 96.7 0.23 4.9E-06 45.9 17.5 153 254-407 8-198 (345)
44 PF13440 Polysacc_synt_3: Poly 96.4 0.026 5.6E-07 51.3 10.1 67 37-103 184-251 (251)
45 COG4267 Predicted membrane pro 91.4 14 0.00029 35.4 28.7 138 86-238 74-211 (467)
46 PF14184 YrvL: Regulatory prot 74.3 45 0.00097 27.0 12.3 99 118-218 6-105 (132)
47 COG4267 Predicted membrane pro 71.3 1E+02 0.0022 29.8 12.7 107 113-223 323-431 (467)
48 PTZ00370 STEVOR; Provisional 41.4 43 0.00094 30.7 4.3 35 395-429 255-292 (296)
49 PF00558 Vpu: Vpu protein; In 35.8 86 0.0019 22.8 4.3 27 416-442 28-54 (81)
50 PF06305 DUF1049: Protein of u 33.8 53 0.0011 22.7 3.0 9 406-414 31-39 (68)
51 PRK01637 hypothetical protein; 33.4 3.9E+02 0.0085 24.7 11.2 11 435-445 275-285 (286)
52 COG5393 Predicted membrane pro 31.8 2.5E+02 0.0055 22.0 6.9 49 390-438 76-124 (131)
53 PF03812 KdgT: 2-keto-3-deoxyg 31.4 3.8E+02 0.0081 25.3 8.8 66 277-343 123-202 (314)
54 TIGR03141 cytochro_ccmD heme e 31.0 1.4E+02 0.0031 18.8 4.4 20 399-418 8-27 (45)
55 PRK03612 spermidine synthase; 30.8 6E+02 0.013 26.0 20.0 50 185-236 149-198 (521)
56 PRK11085 magnesium/nickel/coba 30.4 1.4E+02 0.0031 28.2 6.2 25 398-423 291-315 (316)
57 COG0598 CorA Mg2+ and Co2+ tra 30.3 4.3E+02 0.0092 25.0 9.5 71 349-423 243-321 (322)
58 PF06781 UPF0233: Uncharacteri 29.8 79 0.0017 23.4 3.4 38 44-81 35-74 (87)
59 PRK08156 type III secretion sy 28.9 2.7E+02 0.0059 26.9 7.8 30 417-446 198-227 (361)
60 PF04995 CcmD: Heme exporter p 28.5 1.6E+02 0.0035 18.7 4.7 21 399-419 7-27 (46)
61 PF08627 CRT-like: CRT-like; 26.2 2.3E+02 0.005 22.6 5.5 29 38-66 51-79 (130)
62 PF03904 DUF334: Domain of unk 26.1 4E+02 0.0087 23.7 7.5 38 108-145 142-179 (230)
63 PF05313 Pox_P21: Poxvirus P21 24.6 2.3E+02 0.0049 24.2 5.5 26 213-238 136-161 (189)
64 PF10507 DUF2453: Protein of u 23.8 3.6E+02 0.0077 21.1 6.6 47 57-108 24-70 (111)
65 PF11446 DUF2897: Protein of u 23.4 64 0.0014 21.5 1.8 22 403-424 11-32 (55)
66 PRK14472 F0F1 ATP synthase sub 23.0 1.3E+02 0.0029 25.5 4.2 34 395-428 12-45 (175)
67 PF05684 DUF819: Protein of un 23.0 7E+02 0.015 24.3 9.6 89 330-418 75-165 (378)
68 PF02592 DUF165: Uncharacteriz 22.9 4.2E+02 0.0091 21.6 11.1 56 215-281 69-124 (145)
69 TIGR01478 STEVOR variant surfa 22.4 85 0.0018 28.8 2.9 32 395-426 259-293 (295)
70 TIGR00383 corA magnesium Mg(2+ 22.0 3E+02 0.0065 25.8 6.8 52 371-423 260-317 (318)
71 PF02487 CLN3: CLN3 protein; 21.0 1.8E+02 0.0038 28.7 5.0 26 31-56 238-263 (402)
72 KOG2234 Predicted UDP-galactos 20.8 7.5E+02 0.016 23.7 17.4 50 219-268 50-101 (345)
73 PF04505 Dispanin: Interferon- 20.2 3.5E+02 0.0076 19.7 6.3 36 94-129 38-73 (82)
74 PRK11085 magnesium/nickel/coba 20.1 5.8E+02 0.013 24.1 8.2 56 185-240 254-315 (316)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=100.00 E-value=3.1e-54 Score=425.88 Aligned_cols=396 Identities=22% Similarity=0.334 Sum_probs=374.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccccc
Q 013168 31 LSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQ 110 (448)
Q Consensus 31 ~~~~~k~il~~~~P~~~~~~~~~~~~~id~~~v~~~g~~~~aa~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~ 110 (448)
.++..|+++++++|++++++.+.+++++|++++||+|++++|+.++++++..++ +.+..+++.|..+++||++|+||++
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~-~~~~~gl~~g~~~liaq~~Ga~~~~ 90 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLI-IAIFIGLGTGTTVLVAQAIGAGDRK 90 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHcCCchH
Confidence 678999999999999999999999999999999999999999999999999986 9999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCchhHHHH
Q 013168 111 RIGTQTYTAIFCLFLVCFPLSFL-WIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFL 189 (448)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 189 (448)
++++..++++.+.+++++++.++ +.+.++++.+++.++|+.+.+.+|+++..++.|+..++..+.+.+|+.|++|.+++
T Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~ 170 (455)
T COG0534 91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY 170 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence 99999999999999999888775 99999999999998889999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhHhhcc-cC-CCcchhHHHHHHHHHHHHHHHHHHHhcccc-cccccCCCChHhHhcHHHHHHHHhHH
Q 013168 190 SSCAALCLHIPICWSLVYK-SG-LGNLGGALAIGISNWLNVTFLAIYMKFSTA-CAESRVPISMELFQGIGEFFHFAIPS 266 (448)
Q Consensus 190 ~~~~~~~~~i~~~~~li~~-~~-~G~~Gaa~a~~i~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~ 266 (448)
.++++.++|+++|++|+++ ++ +|+.|+++||++++++.+++..++++++++ ......+..+++++.+|+++++|+|.
T Consensus 171 ~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~ 250 (455)
T COG0534 171 ILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPI 250 (455)
T ss_pred HHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccH
Confidence 9999999999999999998 57 999999999999999999999999987764 22333444456678899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------
Q 013168 267 AVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAA----------------------------- 317 (448)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~aa~~i~~~i~~~~~~~~~~~~~a----------------------------- 317 (448)
+++...+...+...+.+.+++|+ ..+|+|+++.++.++.++++.|+++|
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~G~--~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~ 328 (455)
T COG0534 251 FLESLSESLGFLLLTLFVARLGT--VALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSL 328 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999996 47799999999999999999999999
Q ss_pred ------------HhhHhhhccCCchHHHHHHHHHHHHHHHHHHHhhHHhhHhHHhhccCcchhhHHHHHHHHHHHhHHHH
Q 013168 318 ------------VRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTA 385 (448)
Q Consensus 318 ------------~~~~i~~lf~~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~ 385 (448)
+++++.++|++|+++.+.+..++++....+++++++.+..+++||.||++.++..++++.|++++|+.
T Consensus 329 ~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~ 408 (455)
T COG0534 329 LIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLA 408 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCchhHhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 013168 386 AILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTCTNWEKQASKA 430 (448)
Q Consensus 386 ~~l~~~~~~g~~gi~~a~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 430 (448)
+++.+.. +|..|+|+++.+++.+++++..++++|.+|+++..+.
T Consensus 409 ~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (455)
T COG0534 409 YLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRWRRKAVAA 452 (455)
T ss_pred HHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Confidence 9999876 8999999999999999999999999999999775543
No 2
>PRK10189 MATE family multidrug exporter; Provisional
Probab=100.00 E-value=9.9e-51 Score=404.59 Aligned_cols=391 Identities=17% Similarity=0.186 Sum_probs=358.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccccchH
Q 013168 33 GEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRI 112 (448)
Q Consensus 33 ~~~k~il~~~~P~~~~~~~~~~~~~id~~~v~~~g~~~~aa~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~ 112 (448)
+.+|+++++++|.+++++...+...+|+.++|++|++++|+++++.++..+. +.+..|++.+.++++||++|+||+|++
T Consensus 26 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~~-~~~~~gl~~g~~~lvsq~~Ga~~~~~~ 104 (478)
T PRK10189 26 LFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVI-MAFFAAIDLGTTVVVAFSLGKRDRRRA 104 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 5689999999999999999999999999999999999999999999999886 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhC--CChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCchhHHHH
Q 013168 113 GTQTYTAIFCLFLVCFPLSFL-WIYAGKLLVLIG--QDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFL 189 (448)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~--~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 189 (448)
++..++++.++++++++++++ +.+.++++.+++ .|+|+.+.+..|+++..++.|+..+...+.+++|+.|+++.+++
T Consensus 105 ~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~ 184 (478)
T PRK10189 105 RAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPLL 184 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhHH
Confidence 999999999999999988876 778999999994 69999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhHhhcc----cCCCcchhHHHHHHHHHHHHHHHHHHHhcccc--cccccCC-CChHhHhcHHHHHHH
Q 013168 190 SSCAALCLHIPICWSLVYK----SGLGNLGGALAIGISNWLNVTFLAIYMKFSTA--CAESRVP-ISMELFQGIGEFFHF 262 (448)
Q Consensus 190 ~~~~~~~~~i~~~~~li~~----~~~G~~Gaa~a~~i~~~~~~i~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~ 262 (448)
.++...++|++++++++++ +++|+.|+|+|+.+++++..++..+++.++++ .+.++.+ +.+.+++.+|+++++
T Consensus 185 i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~i 264 (478)
T PRK10189 185 INGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALRISLKSYFKPLNFAIIWEVMGI 264 (478)
T ss_pred HHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeeccccccCCHHHHHHHHHH
Confidence 9999999999999999975 47999999999999999998887666654321 1111111 122356788999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------
Q 013168 263 AIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAA------------------------- 317 (448)
Q Consensus 263 ~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~aa~~i~~~i~~~~~~~~~~~~~a------------------------- 317 (448)
|+|.+++.......+.+.+.+++.+|+ .++|||+++.++.++.++++.|+++|
T Consensus 265 G~P~~~~~~~~~~~~~~~~~~~~~~G~--~~~Aa~~I~~~i~~~~~~~~~gi~~A~~~lvg~~~Ga~~~~~a~~~~~~~~ 342 (478)
T PRK10189 265 GIPASIESVLFNGGKLLTQMFVAGMGT--SVIAGNFIAFSIAALINLPGNALGSASTIITGTRLGKGQIAQAERQLRHVF 342 (478)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 999999988888888888888899997 47799999999999999999999888
Q ss_pred ----------------HhhHhhhccCCchHHHHHHHHHHHHHHHHHHHhhHHhhHhHHhhccCcchhhHHHHHHHHHHHh
Q 013168 318 ----------------VRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCG 381 (448)
Q Consensus 318 ----------------~~~~i~~lf~~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 381 (448)
+++++..+|++|+++.+.+..++++.+..+++++++.+..+.+||.||++.++++++++.|+++
T Consensus 343 ~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~~i~~~~~~~v~ 422 (478)
T PRK10189 343 WLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAMWVSMLGMWGCR 422 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCchhHhHHHHHHHHHHHHHHHHHHHcCCHHHH
Q 013168 382 IPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTCTNWEKQ 426 (448)
Q Consensus 382 i~~~~~l~~~~~~g~~gi~~a~~~~~~~~~~~~~~~~~~~~w~~~ 426 (448)
+|+.+++.+..++|+.|+|++..+++.+.++++++++++++|+++
T Consensus 423 ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~~~~~W~~~ 467 (478)
T PRK10189 423 VVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRMVSGRWLWK 467 (478)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCccccC
Confidence 999999998888999999999999999999999999999999973
No 3
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=100.00 E-value=3.8e-48 Score=385.94 Aligned_cols=391 Identities=21% Similarity=0.309 Sum_probs=353.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccccc
Q 013168 31 LSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQ 110 (448)
Q Consensus 31 ~~~~~k~il~~~~P~~~~~~~~~~~~~id~~~v~~~g~~~~aa~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~ 110 (448)
.++.+|+++++++|.+++++...+...+|+++++++|++++|+++++.++.++. ..+..|++.+..+++||++|++|+|
T Consensus 5 ~~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~~-~~~~~gl~~~~~~i~aq~~Ga~~~~ 83 (464)
T PRK00187 5 PTTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSFV-SIFCVGVIAAVGTLVAIRHGAGDIE 83 (464)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCChh
Confidence 467899999999999999999999999999999999999999999999999986 8899999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCchhHHHHH
Q 013168 111 RIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLS 190 (448)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 190 (448)
++++..++++.+.++++++..++..+.++++.+++.|+|+.+.+.+|+++..++.|+..+...+++++|+.|+++++++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~ 163 (464)
T PRK00187 84 GATRLAQAGLWLAWLLALVAALLLWNLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMVI 163 (464)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 99999999999999999887776557799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhHhhcc----cCCCcchhHHHHHHHHHHHHHHHHHHHhccccccc--ccCCCChHhHhcHHHHHHHHh
Q 013168 191 SCAALCLHIPICWSLVYK----SGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAE--SRVPISMELFQGIGEFFHFAI 264 (448)
Q Consensus 191 ~~~~~~~~i~~~~~li~~----~~~G~~Gaa~a~~i~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 264 (448)
++++.++|+++|++|+++ |++|+.|+++|+.+++....+...++++++++.++ .+.+..+.+++.+|+++++++
T Consensus 164 ~~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~lg~ 243 (464)
T PRK00187 164 SLAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPAYAAYPLRKGLSRPSRAALRELWRLGL 243 (464)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhccccCCCHHHHHHHHHhhh
Confidence 999999999999999976 36999999999999998888777666654432211 112222345667899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------
Q 013168 265 PSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAA--------------------------- 317 (448)
Q Consensus 265 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~aa~~i~~~i~~~~~~~~~~~~~a--------------------------- 317 (448)
|.++++..+...+.+++.+++++|+. ++|+++++.++..+.++++.|++.+
T Consensus 244 P~~~~~~~~~~~~~i~~~~i~~~G~~--alAa~~i~~~i~~l~~~~~~gi~~a~~~lvgq~~Ga~~~~~~~~~~~~~l~~ 321 (464)
T PRK00187 244 PIGGTYAVEVGLFTFAALCMGALGST--QLAAHQIALQIVSVAFMVPVGLSYAVTMRVGQHYGAGRLLEARRAGRVGIGF 321 (464)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999974 6799999999999999999999888
Q ss_pred --------------HhhHhhhccCC--ch---HHHHHHHHHHHHHHHHHHHhhHHhhHhHHhhccCcchhhHHHHHHHHH
Q 013168 318 --------------VRRVFGYVFSN--EK---QVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFY 378 (448)
Q Consensus 318 --------------~~~~i~~lf~~--d~---~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 378 (448)
+++++.++|++ |+ ++.+.+..++++.+++.++++++.+..+++||.||++.++++++++.|
T Consensus 322 ~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~~~~~~~~~~~~~~ 401 (464)
T PRK00187 322 GAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKDARTTFLIGLACYW 401 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCccHHHHHHHHHHHH
Confidence 88999999974 44 688999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHhcCCCchhHhHHHHHHHHHHHHHHHHHHHcCCHH
Q 013168 379 LCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTCTNWE 424 (448)
Q Consensus 379 ~~~i~~~~~l~~~~~~g~~gi~~a~~~~~~~~~~~~~~~~~~~~w~ 424 (448)
++++|+.+++.+.+++|+.|+|++..+++.+.+++...++++++|+
T Consensus 402 ~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~~~~~~ 447 (464)
T PRK00187 402 LVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFEWKTAR 447 (464)
T ss_pred HHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998889999999999999999998887777554443
No 4
>PRK01766 multidrug efflux protein; Reviewed
Probab=100.00 E-value=7e-47 Score=377.75 Aligned_cols=396 Identities=19% Similarity=0.313 Sum_probs=362.2
Q ss_pred cchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccc
Q 013168 28 WGVLSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQ 107 (448)
Q Consensus 28 ~~~~~~~~k~il~~~~P~~~~~~~~~~~~~id~~~v~~~g~~~~aa~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~ 107 (448)
.+.+++.+|+++++++|.+++++...+...+|+.+++++|++++++++++.++..+. ..+..|++.+..+.+||++|++
T Consensus 4 ~~~~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~~-~~~~~g~~~a~~~~vs~~~g~~ 82 (456)
T PRK01766 4 TQKYKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLPV-ILFGHGLLLALTPIVAQLNGAG 82 (456)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCC
Confidence 344688999999999999999999999999999999999999999999999998775 7889999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCchhH
Q 013168 108 QYQRIGTQTYTAIFCLFLVCFPLSFL-WIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIP 186 (448)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~ 186 (448)
|+|++++..++++.+.+++++++.++ +.++++++.+++.++++.+.+..|+++.+++.|+..+...+.+++|+.|++++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~ 162 (456)
T PRK01766 83 RRERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKP 162 (456)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChH
Confidence 99999999999999999999888876 77789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhHhhcc----cCCCcchhHHHHHHHHHHHHHHHHHHHhcccccc--cccCCCChHhHhcHHHHH
Q 013168 187 MFLSSCAALCLHIPICWSLVYK----SGLGNLGGALAIGISNWLNVTFLAIYMKFSTACA--ESRVPISMELFQGIGEFF 260 (448)
Q Consensus 187 ~~~~~~~~~~~~i~~~~~li~~----~~~G~~Gaa~a~~i~~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 260 (448)
+++.++++.++|+++++++++. +++|+.|+++++.+++++..++..++.+++++.+ +.+.++.+.+++.+|+++
T Consensus 163 ~~~~~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il 242 (456)
T PRK01766 163 TMVIGFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWAVIKRLL 242 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhhccccCCCHHHHHHHH
Confidence 9999999999999999999864 5689999999999999999999888776554321 122222334566789999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------
Q 013168 261 HFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAA----------------------- 317 (448)
Q Consensus 261 ~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~aa~~i~~~i~~~~~~~~~~~~~a----------------------- 317 (448)
++++|..++...+...+.+.+.+.+++|+. ++|+++++.++.+++++++.|++.+
T Consensus 243 ~l~~P~~~~~~~~~~~~~~~~~~~~~~G~~--~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v~~~~Ga~~~~~~~~~~~~ 320 (456)
T PRK01766 243 KLGLPIGLAIFFEVSLFAVVTLLVSPLGTV--TVAAHQIALNFSSLLFMLPLSLAMALTIRVGFELGAGRTLDARQYAYI 320 (456)
T ss_pred HccchHHHHHHHHHHHHHHHHHHHHHcChH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 999999999999999999999999999964 5799999999999999999999887
Q ss_pred ------------------HhhHhhhccCCchHHHHHHHHHHHHHHHHHHHhhHHhhHhHHhhccCcchhhHHHHHHHHHH
Q 013168 318 ------------------VRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYL 379 (448)
Q Consensus 318 ------------------~~~~i~~lf~~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 379 (448)
+++++.++|++||++.+....++++..+..++++++.+..+++||.||++.++++++++.|+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~ 400 (456)
T PRK01766 321 GLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIFFITFIAYWV 400 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHhcCCCchhHhHHHHHHHHHHHHHHHHHHHcCCHHHH
Q 013168 380 CGIPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTCTNWEKQ 426 (448)
Q Consensus 380 ~~i~~~~~l~~~~~~g~~gi~~a~~~~~~~~~~~~~~~~~~~~w~~~ 426 (448)
+.+|..+++.+..++|+.|+|+++.+++.+.+++..+++++.+||..
T Consensus 401 ~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (456)
T PRK01766 401 LGLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRKLQRQPS 447 (456)
T ss_pred HHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999998888999999999999999999999999999888763
No 5
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=100.00 E-value=5.6e-46 Score=367.07 Aligned_cols=383 Identities=15% Similarity=0.132 Sum_probs=332.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccccc
Q 013168 32 SGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHL-GQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQ 110 (448)
Q Consensus 32 ~~~~k~il~~~~P~~~~~~~~~~~~~id~~~v~~~-g~~~~aa~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~ 110 (448)
.++.|+++++++|.+++++...+++++|+.++|++ |++++|+++++.++.++. ..+..+++.+.++++||++|+||+|
T Consensus 5 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~-~~~~~~~~~g~~~lvsq~~Ga~~~~ 83 (441)
T PRK10367 5 TSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFL-FMLLLFLRMSTTGLTAQAFGAKNPQ 83 (441)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 45688999999999999999999999999999998 677999999999999986 8899999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCchhHHHH
Q 013168 111 RIGTQTYTAIFCLFLVCFPLSFL-WIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFL 189 (448)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 189 (448)
++++..++++.+++++++++.++ ..+.++++.+++.++|+.+.+.+|+++..++.|+..+..++.+++|+.|+++.+++
T Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~ 163 (441)
T PRK10367 84 ALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVI 163 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH
Confidence 99999999999999999988876 77889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhHhhcccCCCcchhHHHHHHHHHHHHHHHHHHHhcccccccccCCCChHh-HhcHHHHHHHHhHHHH
Q 013168 190 SSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMEL-FQGIGEFFHFAIPSAV 268 (448)
Q Consensus 190 ~~~~~~~~~i~~~~~li~~~~~G~~Gaa~a~~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~ 268 (448)
.++++.++|+++++++++++++|+.|+++||.+++.+..++..++++++++.++.+.+..+++ ++.+|++++++.|.++
T Consensus 164 ~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~ 243 (441)
T PRK10367 164 LLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISLEMLKTAWRGNFRRLLALNRDIML 243 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHhhhhhHHHHHHHHHhCchHHH
Confidence 999999999999999999888999999999999999999888777765432211111111112 2467899999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------
Q 013168 269 MICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAA------------------------------- 317 (448)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~g~~~~~~aa~~i~~~i~~~~~~~~~~~~~a------------------------------- 317 (448)
+...+...+.+.+.+++++|++ ++|+|+++.++.++.++++.|+++|
T Consensus 244 ~~~~~~~~~~~~~~~~~~~G~~--alAa~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~ 321 (441)
T PRK10367 244 RSLLLQLCFGAITVLGARLGSD--IIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARDGSQLLDVWRAACRQSGIV 321 (441)
T ss_pred HHHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999973 6799999999999999999999998
Q ss_pred ----------HhhHhhhccCCchHHHHHHHHHHHHHHHHHHHhhHHhhHhHHhhccC---cchhhHHHHHHHHHHHhHHH
Q 013168 318 ----------VRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCG---WQNIAAFVNLGAFYLCGIPT 384 (448)
Q Consensus 318 ----------~~~~i~~lf~~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g---~~~~~~~~~~~~~~~~~i~~ 384 (448)
+++++..+|++|+++.+.+.+++++.+...+......+.+++++|.+ |++.++++++++.|+..++.
T Consensus 322 ~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~dt~~~~~~~~~~~~~~~~~~ 401 (441)
T PRK10367 322 ALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEMRNSMAVAAAGFALTLLTL 401 (441)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999998866443334444444444444 69999999999988633322
Q ss_pred HHHHHHhcCCCchhHhHHHHHHHHHHHHHHHHHHHcCCHHH
Q 013168 385 AAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTCTNWEK 425 (448)
Q Consensus 385 ~~~l~~~~~~g~~gi~~a~~~~~~~~~~~~~~~~~~~~w~~ 425 (448)
.++|+.|+|++..+++.++++++.+++++. |||
T Consensus 402 -------~~~g~~Gvw~a~~~~~~~~~i~~~~~~~~~-~~~ 434 (441)
T PRK10367 402 -------PWLGNHGLWLALTVFLALRGLSLAAIWRRH-WRN 434 (441)
T ss_pred -------HHcCchHHHHHHHHHHHHHHHHHHHHHHHH-Hhc
Confidence 236999999999999999999988776665 864
No 6
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=100.00 E-value=1.5e-45 Score=366.71 Aligned_cols=388 Identities=14% Similarity=0.143 Sum_probs=349.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccccc
Q 013168 32 SGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHL-GQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQ 110 (448)
Q Consensus 32 ~~~~k~il~~~~P~~~~~~~~~~~~~id~~~v~~~-g~~~~aa~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~ 110 (448)
++..|+++++++|.+++++...+++.+|+.+++++ |++++++++++.++.++. ..+..+++.+.+++++|++|+||+|
T Consensus 8 ~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~-~~~~~~~~~g~~~lvsq~~Ga~~~~ 86 (453)
T PRK09575 8 QSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGII-LGIGLMVGMGTGSLLSIKRGEGDLE 86 (453)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH-HHHHHHHhccHHHHHHHHhcCCCHH
Confidence 45789999999999999999999999999999995 999999999999999986 8889999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCchhHHHH
Q 013168 111 RIGTQTYTAIFCLFLVCFPLSFL-WIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFL 189 (448)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 189 (448)
++++..++++.+++++++++.++ +.++++++.+++.++++.+.+.+|+++..++.|+..+.....+++|+.|+++.++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~ 166 (453)
T PRK09575 87 KAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATG 166 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 99999999999999999988876 88899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhHhhcccCCCcchhHHHHHHHHHHHHHHHHHHHhcccccccccCCCChHhHhcHHHHHHHHhHHHHH
Q 013168 190 SSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVM 269 (448)
Q Consensus 190 ~~~~~~~~~i~~~~~li~~~~~G~~Gaa~a~~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 269 (448)
.++.+.++|+++++++++.+++|+.|+++|+.+++++..++..+++++++...+...+..+.+++.+|+++++|.|.+++
T Consensus 167 ~~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~~ 246 (453)
T PRK09575 167 LMVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRANIRLTLKELRFNWSLAPKIVLLGSSSFFM 246 (453)
T ss_pred HHHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCceeEEeeccCCcCHHHHHHHHHhChhHHHH
Confidence 99999999999999999988899999999999999999998877776544332222222234566789999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------------
Q 013168 270 ICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAA-------------------------------- 317 (448)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~g~~~~~~aa~~i~~~i~~~~~~~~~~~~~a-------------------------------- 317 (448)
.......+.+.+.+.+++|+. .++|++++..++.++.+++..|++.+
T Consensus 247 ~~~~~~~~~~~~~~~~~~g~~-~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvg~~~Ga~~~~~~~~~~~~~l~l~~~~~ 325 (453)
T PRK09575 247 YLYGSFVVALHNRLFMEYGSA-LTVGAYAIVGYLMVLYYLVAEGIAEGMQPPVSYYFGARQYDNIKKLLKLAMKVTVLAG 325 (453)
T ss_pred HHHHHHHHHHHHHHHHHhCch-HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Confidence 999888888888888888863 36799999999999999999999888
Q ss_pred ---------HhhHhhhccCC-chHHHHHHHHHHHHHHHHHHHhhHHhhHhHHhhccCcchhhHHHHHHHHHHHhHHHHHH
Q 013168 318 ---------VRRVFGYVFSN-EKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAI 387 (448)
Q Consensus 318 ---------~~~~i~~lf~~-d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~ 387 (448)
+++++.++|++ ||++.+.+.+++++.+.+.++++++.+..+++||.||++.+++.++.+ +++.+|..++
T Consensus 326 ~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~v~ip~~~l 404 (453)
T PRK09575 326 IAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGKALFISIGN-MLIQLPFLFI 404 (453)
T ss_pred HHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHh-HHHHHHHHHH
Confidence 79999999995 889999999999999999999999999999999999999999999876 6788999998
Q ss_pred HHHhcCCCchhHhHHHHHHHHHHHHHHHHHHHcCCHHH
Q 013168 388 LGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTCTNWEK 425 (448)
Q Consensus 388 l~~~~~~g~~gi~~a~~~~~~~~~~~~~~~~~~~~w~~ 425 (448)
+... +|+.|+|+++.+++.+.+++...++++ +|||
T Consensus 405 l~~~--~G~~Gvw~a~~~~~~~~~~~~~~~~~~-~~~~ 439 (453)
T PRK09575 405 LPKW--LGVDGVWLAMPLSNIALSLVVAPMLWR-DVKK 439 (453)
T ss_pred HHHH--HCcchHhhHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 8653 599999999999999998888766654 4543
No 7
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=100.00 E-value=5.2e-40 Score=321.97 Aligned_cols=412 Identities=44% Similarity=0.774 Sum_probs=390.9
Q ss_pred cchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccc
Q 013168 28 WGVLSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQ 107 (448)
Q Consensus 28 ~~~~~~~~k~il~~~~P~~~~~~~~~~~~~id~~~v~~~g~~~~aa~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~ 107 (448)
.+....+.|++++++.|.+.....+.....+++.++||+|+.++++.++++...+...+.+..|+..+..++++|++|++
T Consensus 20 ~~~~~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~ 99 (473)
T KOG1347|consen 20 FSQLVTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAK 99 (473)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhccc
Confidence 34447899999999999999999999999999999999999999999999999998889999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCchhHH
Q 013168 108 QYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPM 187 (448)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 187 (448)
+++......+++.......+++...++.+.++++..+++++++...+..|.++..+..+.+........++|+++...+.
T Consensus 100 ~~~~lg~~lqrs~~~l~~~~~~~~~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~ 179 (473)
T KOG1347|consen 100 KFTALGVYLQRSGIVLLVQGLPISLLILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPL 179 (473)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhHhhcccCCCcchhHHHHHHHHHHHHHHHHHHHhcccccccccCCCChHhHhcHHHHHHHHhHHH
Q 013168 188 FLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSA 267 (448)
Q Consensus 188 ~~~~~~~~~~~i~~~~~li~~~~~G~~Gaa~a~~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 267 (448)
.+......++|+++++++++.+++|..|++++..++++....+...|..... ....|..++.+ ++.++++++.+.|.+
T Consensus 180 ~~~~~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~-~~~~w~~~s~~-~~~~~~~~~lai~s~ 257 (473)
T KOG1347|consen 180 LVIGLVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSG-CLAAWSGFSGE-FDSWGPFFALAIPSA 257 (473)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecC-chhhhhhhhHh-hhhHHHHHHHhhcch
Confidence 9999999999999999999999999999999999999999999998887665 45566666666 899999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------
Q 013168 268 VMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAA------------------------------ 317 (448)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~g~~~~~~aa~~i~~~i~~~~~~~~~~~~~a------------------------------ 317 (448)
++..+|++.+.+..+..+.+++....+++.++..++....++++.+++.+
T Consensus 258 ~miclE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~~~~~~~a~strv~neLGag~p~~ar~~~~v~~~~~~~ 337 (473)
T KOG1347|consen 258 VMICLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMIPGAFSAAVSTRVSNELGAGKPKRARVSAKVALQTSVA 337 (473)
T ss_pred heeHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCCChhhhhhHHHHHHHHHHH
Confidence 99999999999999999999998889999999999999999999888887
Q ss_pred -----------HhhHhhhccCCchHHHHHHHHHHHHHHHHHHHhhHHhhHhHHhhccCcchhhHHHHHHHHHHHhHHHHH
Q 013168 318 -----------VRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAA 386 (448)
Q Consensus 318 -----------~~~~i~~lf~~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~ 386 (448)
.++.+..+|++|+++.+...+..++.+.+.++++.+.+..++.+|.|.++...++++.+++++++|...
T Consensus 338 ~g~~~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~ga~vnl~~yyl~G~p~g~ 417 (473)
T KOG1347|consen 338 IGASLGTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIGAVINLVAYYLVGAPVGL 417 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeeccccceEEEeeeeeeEecCccee
Confidence 799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCchhHhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 013168 387 ILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTCTNWEKQASKARERISKGRSLA 441 (448)
Q Consensus 387 ~l~~~~~~g~~gi~~a~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 441 (448)
++.+..++|+.|+|.++..+..+.........+++||+++..+.+++...+..+.
T Consensus 418 ~l~~~~~~g~~glw~G~~~~~~~~~~~l~~~~~~tdW~~~~~~a~~~~~~~~~~~ 472 (473)
T KOG1347|consen 418 YLGFFTKFGVKGLWIGILLGFSVQTLVLAIVTARTDWKNQAEKAFARIIASLVLV 472 (473)
T ss_pred EEEEEEecCceEEEeehHHHHHHHHHHHHHheeeccHHHHHHHHHHHHHhhccCC
Confidence 9999999999999999999988899999999999999999999999987766543
No 8
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=100.00 E-value=9.5e-30 Score=245.02 Aligned_cols=281 Identities=26% Similarity=0.437 Sum_probs=249.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccccchHHHHHHHHHHHH
Q 013168 44 PMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCL 123 (448)
Q Consensus 44 P~~~~~~~~~~~~~id~~~v~~~g~~~~aa~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 123 (448)
|.+++++...+...+|+.+++++|++++++++++.++..+. ..+..|++++..+.++|+.|++|+|++++..+.+..+.
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~~-~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 79 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFL-FSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLA 79 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHH-HHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999998875 88999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHhHHHHHHHhCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhhhhh
Q 013168 124 FLVCFPLSFL-WIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPIC 202 (448)
Q Consensus 124 ~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 202 (448)
.+++++++++ +.+++++..+++.+++..+.+..++++++++.++..+.....+++|+.++.+.....++.+.+++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~ 159 (342)
T TIGR00797 80 LLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILN 159 (342)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHh
Confidence 9999998876 888999999998788888999999999999999999999999999999999999999999999999999
Q ss_pred hHhhc-ccC-CCcchhHHHHHHHHHHHHHHHHHHHhcccccccccCCCChHhHhcHHHHHHHHhHHHHHHHHHHHHHHHH
Q 013168 203 WSLVY-KSG-LGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELL 280 (448)
Q Consensus 203 ~~li~-~~~-~G~~Gaa~a~~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 280 (448)
+++++ ..+ +|+.|+++++.+++++..++..++.+++++.+.++.+..+.+++.+|++++++.|..+.....++.+.++
T Consensus 160 ~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~ 239 (342)
T TIGR00797 160 YILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRLLKLGLPIAFRVILESLSFALL 239 (342)
T ss_pred HHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 99987 556 7899999999999999999888777654333222222233455678999999999999999999999999
Q ss_pred HHHhccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccC
Q 013168 281 ILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVRRVFGYVFS 327 (448)
Q Consensus 281 ~~~~~~~g~~~~~~aa~~i~~~i~~~~~~~~~~~~~a~~~~i~~lf~ 327 (448)
+.+++.+|+ .++++|+++.++.+++..++.+++++..+.+.+.+.
T Consensus 240 ~~i~~~~g~--~~v~~~~~a~~~~~~~~~~~~~~~~a~~~~~~~~~~ 284 (342)
T TIGR00797 240 ALLVARLGS--IALAAHQIALNVESLLFMPAFGFGIAVSILVGQALG 284 (342)
T ss_pred HHHHHHcCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999988886 367899999999999999999999996666666663
No 9
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.98 E-value=7.7e-28 Score=243.87 Aligned_cols=371 Identities=11% Similarity=0.052 Sum_probs=300.2
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhhc-CChhHH-HHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHhhcccccchHH
Q 013168 38 QGYIAAPMVAVTLSQYLLQVVSMMMVGH-LGQLAL-SSTAMAISLASVTGFSVL--LGMASALETLCGQAYGAQQYQRIG 113 (448)
Q Consensus 38 il~~~~P~~~~~~~~~~~~~id~~~v~~-~g~~~~-aa~~~~~~i~~~~~~~~~--~gl~~~~~~~~s~~~g~~~~~~~~ 113 (448)
+.|-+.-.+++++...+++++|..++++ +|++++ ++++.+.++.+.+ ..+. .|++.+..+...+..+++ |+++
T Consensus 2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~-~~~~~~~g~~~a~i~~~~~~~~~~--~~~~ 78 (502)
T TIGR01695 2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFF-RRLFAEGAFNSAFVPVFTKAKKKE--KEAR 78 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHH-HHHHHhhHHHHHHHHHHHHHHhhh--hHHH
Confidence 4677788899999999999999999999 899999 8999999998765 4333 357777666665554332 5777
Q ss_pred HHHHHHHHHHHHHHHH-HHHH-HHhHHHHHHHh--CCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCchhHHHH
Q 013168 114 TQTYTAIFCLFLVCFP-LSFL-WIYAGKLLVLI--GQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFL 189 (448)
Q Consensus 114 ~~~~~~~~~~~~~~~~-~~~~-~~~~~~l~~~~--~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 189 (448)
+.+..+.....+++.. +.++ +.+++++..++ +.+++..+.+.+|++++.++.++..+.....+++|+.++++.+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 158 (502)
T TIGR01695 79 RAFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSF 158 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHH
Confidence 7777777666555444 4444 77888888888 456777789999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhHhhcccCCCcchhH--HHHHHHHHHHHHHHHHHHhcccccccccCCCChHhHhcHHHHHHHHhHHH
Q 013168 190 SSCAALCLHIPICWSLVYKSGLGNLGGA--LAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSA 267 (448)
Q Consensus 190 ~~~~~~~~~i~~~~~li~~~~~G~~Gaa--~a~~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 267 (448)
.++...+++++..+++. +++|..|++ +++.++..+..++..++.++++.+.+.+. +.+++.+|++++.+.|..
T Consensus 159 ~~i~~~i~~i~~~~~~~--~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~k~~l~~~~p~~ 233 (502)
T TIGR01695 159 SPILFNIGVILSLLFFD--WNYGQYSLALAIGVLIGGVAQLLIQLPFLRKAGFLLKPRF---NFRDPGLKRFLKLFLPTT 233 (502)
T ss_pred HHHHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccCcC---CCCChhHHHHHHHHHHHH
Confidence 99999888877555554 568999988 99999999998888776655432111111 123456789999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHHHH-HHHHHHHH-----------------------------
Q 013168 268 VMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYA-IPYGLGAA----------------------------- 317 (448)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~g~~~~~~aa~~i~~~i~~~~~~-~~~~~~~a----------------------------- 317 (448)
++.........+++.+.+.+|++ ++++|+.+.++.++... +..+++++
T Consensus 234 ~~~~~~~~~~~id~~~~~~~~~~--~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~~~~~~~~~~~~~~ 311 (502)
T TIGR01695 234 LGSSASQITLLINTALASFLEIG--SVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNELRDLLNQGIRLSL 311 (502)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 99999999999999888877763 56889999998887654 45555555
Q ss_pred ------------HhhHhhhccCC----chHHHHHHHHHHHHHHHHHHHhhHHhhHhHHhhccCcchhhHHHHHHHHHHHh
Q 013168 318 ------------VRRVFGYVFSN----EKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCG 381 (448)
Q Consensus 318 ------------~~~~i~~lf~~----d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 381 (448)
+++++.++|.+ |++..+....++.+++++.++.+++.++...+++.||++.+++.++++ .++.
T Consensus 312 ~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~-~~i~ 390 (502)
T TIGR01695 312 LLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRTPFINSVIS-VVLN 390 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCccCHHHHHHH-HHHH
Confidence 78888888865 667788899999999999999999999999999999999999999988 5677
Q ss_pred HHHHHHHHHhcCCCchhHhHHHHHHHHHHHHHHHHHHHcC
Q 013168 382 IPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTCT 421 (448)
Q Consensus 382 i~~~~~l~~~~~~g~~gi~~a~~~~~~~~~~~~~~~~~~~ 421 (448)
+|+.+++.. .+|..|+|++..+++.+..++..++++|.
T Consensus 391 i~l~~~l~~--~~G~~G~~~a~~i~~~~~~~~~~~~~~~~ 428 (502)
T TIGR01695 391 ALLSLLLIF--PLGLVGIALATSAASMVSSVLLYLMLNRR 428 (502)
T ss_pred HHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888887764 46999999999999999988887777664
No 10
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.97 E-value=5.2e-28 Score=244.32 Aligned_cols=373 Identities=13% Similarity=0.094 Sum_probs=296.3
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhhc-CChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccccchHHHHHH
Q 013168 39 GYIAAPMVAVTLSQYLLQVVSMMMVGH-LGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTY 117 (448)
Q Consensus 39 l~~~~P~~~~~~~~~~~~~id~~~v~~-~g~~~~aa~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~ 117 (448)
.|-+.|.+++++...+.+++|+.+++| +|++++|+++.+.++..+.......|++.+..+.++|..|++|+|++++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~~ 81 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKILK 81 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHHHH
Confidence 467899999999999999999999999 7999999999999998876333446999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-HHhHHHHHHHhCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Q 013168 118 TAIFCLFLVCFPLSFL-WIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALC 196 (448)
Q Consensus 118 ~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 196 (448)
+++++.++.++++.++ +.+.+++...++++++. ..+++++.+..++..+.....+.+|+.++.+.....++++.+
T Consensus 82 ~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~i 157 (488)
T TIGR02900 82 VSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERS----LYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIEQI 157 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHHHH
Confidence 9999999999888875 77788887777666543 356888899999999999999999999999999999999999
Q ss_pred hhhhhhhHhhc-----ccCCCcchhHHHHHHHHHHHHHHHHHHHhcccccc--cccCCCChHhHhcHHHHHHHHhHHHHH
Q 013168 197 LHIPICWSLVY-----KSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACA--ESRVPISMELFQGIGEFFHFAIPSAVM 269 (448)
Q Consensus 197 ~~i~~~~~li~-----~~~~G~~Gaa~a~~i~~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~p~~~~ 269 (448)
+|+.++..++. ..+.|+.|+++++.++..+..++..++++++++.+ ..+.+..+.+++.+|++++.+.|..++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~p~~l~ 237 (488)
T TIGR02900 158 VRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDYKSEGKALLFDLFSVSLPLTLS 237 (488)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCcchHHHHHHHHHHHHHHHHH
Confidence 99877655543 23467888999999999999998776665443321 111122233456789999999999999
Q ss_pred HHHHHHHHHHHHHHhccC----CCh-hhHHHHH----HHHHHHHHHHHHHHHHHHHH-----------------------
Q 013168 270 ICLEWWSFELLILMSGLL----PNP-QLETSVL----SVCLNTIQTLYAIPYGLGAA----------------------- 317 (448)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~----g~~-~~~~aa~----~i~~~i~~~~~~~~~~~~~a----------------------- 317 (448)
+........++++++++. |.. +.+.+.+ +++.++..+...+..+++.+
T Consensus 238 ~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~~~~~p~~s~~~~~~~~~~~~~~~~~ 317 (488)
T TIGR02900 238 RFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPAVITSSLSTALVPDISEAMAKKNYSSIEKRINQ 317 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999988888888776543 210 1111222 23334444444444444444
Q ss_pred ------------------HhhHhhhccCCchHHHHHHHHHHHHHHHHHHHhhHHhhHhHHhhccCcchhhHHHHHHHHHH
Q 013168 318 ------------------VRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYL 379 (448)
Q Consensus 318 ------------------~~~~i~~lf~~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 379 (448)
++|++..+|.++++ +.+++++.+...++.+++.+..+++++.||+|.+++.++++. +
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~----~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-i 392 (488)
T TIGR02900 318 AIKISLLLGLITTVILLVIPDELGALFYGRPD----AGNFIRVLAPSFPFLYFSAPLQSILQGLGKQKVALRNSLIGA-I 392 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHH-H
Confidence 67888888876544 567899999999999999999999999999999999999884 6
Q ss_pred HhHHHHHHHHHhcCCCchhHhHHHHHHHHHHHHHHHHHHHc
Q 013168 380 CGIPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTC 420 (448)
Q Consensus 380 ~~i~~~~~l~~~~~~g~~gi~~a~~~~~~~~~~~~~~~~~~ 420 (448)
+.+++.+.+...+++|..|+|++..+++.+..++..++.+|
T Consensus 393 ~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~ 433 (488)
T TIGR02900 393 VKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKK 433 (488)
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777764467899999999999999999988888776
No 11
>PRK15099 O-antigen translocase; Provisional
Probab=99.96 E-value=5.4e-25 Score=217.41 Aligned_cols=367 Identities=11% Similarity=-0.012 Sum_probs=290.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhhc-CChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccccchHHHHH
Q 013168 38 QGYIAAPMVAVTLSQYLLQVVSMMMVGH-LGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQT 116 (448)
Q Consensus 38 il~~~~P~~~~~~~~~~~~~id~~~v~~-~g~~~~aa~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~ 116 (448)
+.|.+.....+.+...+..++-..++.| +|++++|.++...++..++......|++.+....++|. ++|+|+.++.+
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~~~~~~~~~ 80 (416)
T PRK15099 3 LAKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQPQQLRAVV 80 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCCHHHHHHHH
Confidence 4566777788888888888888888888 89999999999999998764545888888889999988 67888999999
Q ss_pred HHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 013168 117 YTAIFCLFLVCFPLSFL-WIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAAL 195 (448)
Q Consensus 117 ~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 195 (448)
+.++.+.+..+++++++ +.+.+++...++.+++ . ..++.+..+..++..+.....+.+|+.++.+.++...+++.
T Consensus 81 ~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~ 156 (416)
T PRK15099 81 GTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTD-Y---QGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVGS 156 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChh-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998876 8888999988876664 2 34566666666677888899999999999999999999999
Q ss_pred HhhhhhhhHhhcccCCCcchhHHHHHHHHHHHHHHHHHHHhcccccccccCCCChHhHhcHHHHHHHHhHHHHHHHHHHH
Q 013168 196 CLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLEWW 275 (448)
Q Consensus 196 ~~~i~~~~~li~~~~~G~~Gaa~a~~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 275 (448)
++|+.+ +++.+.. .|+.|+++|+.+++.+..+...+++++++..+.++.+ .+.+++.+|+++++|.|..+++...+.
T Consensus 157 ~~~i~l-~i~~~~~-~Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~k~ll~~g~p~~~~~~~~~i 233 (416)
T PRK15099 157 LIGVAA-YYLCYRL-GGYEGALLGLALVPALVVLPAGIMLIRRGTIPLSYLK-PSWDNGLAGQLGKFTLMALITSVTLPV 233 (416)
T ss_pred HHHHHH-HHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHHccceehHhhh-ccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999887 4444332 3999999999999999888777666554332111111 123456678999999999999999989
Q ss_pred HHHHHHHHhc-cCCChhhHHHHHHHHHHHHHH-HHHHHHHHHHH------------------------------------
Q 013168 276 SFELLILMSG-LLPNPQLETSVLSVCLNTIQT-LYAIPYGLGAA------------------------------------ 317 (448)
Q Consensus 276 ~~~~~~~~~~-~~g~~~~~~aa~~i~~~i~~~-~~~~~~~~~~a------------------------------------ 317 (448)
....++.+++ .+|+ .+++.|+++.++.+. ...++.+++++
T Consensus 234 ~~~~~~~~l~~~~g~--~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (416)
T PRK15099 234 AYVMMRNLLAAHYSW--DEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRLTEKRDITREIVKALKFVLPAVAAASFTV 311 (416)
T ss_pred HHHHHHHHHHhcCCH--HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988885 8886 377999999999774 47888888877
Q ss_pred --HhhHhhhccCCchHHHHHHHHHHHHHHHHHHHhhHHhhHhHHhhccCcchhhHHHHHHHHHHHhHHHHHHHHHhcCCC
Q 013168 318 --VRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILGFWLKFR 395 (448)
Q Consensus 318 --~~~~i~~lf~~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g 395 (448)
++|++.++|.+|+ .+...+++++.++..++...+......+-+.++++.....++.. .++.+|+.+++.. .+|
T Consensus 312 ~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~l~i~l~~~li~--~~G 386 (416)
T PRK15099 312 WLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYILAEVSQ-FTLLTGFAHWLIP--LHG 386 (416)
T ss_pred HHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH--Hhh
Confidence 6888888887765 12257788888888888777777666666777777666666554 6777888888774 469
Q ss_pred chhHhHHHHHHHHHHHHHHHHHHHc
Q 013168 396 GRGLWIGIQAGAFTQTLLLGIITTC 420 (448)
Q Consensus 396 ~~gi~~a~~~~~~~~~~~~~~~~~~ 420 (448)
..|++++..+++.+...+......+
T Consensus 387 ~~G~a~a~~is~~~~~~~~~~~~~~ 411 (416)
T PRK15099 387 ALGAAQAYMATYIVYFSLCCGVFLL 411 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998877755554
No 12
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.93 E-value=4.6e-21 Score=190.03 Aligned_cols=345 Identities=13% Similarity=0.105 Sum_probs=285.0
Q ss_pred CChh-HHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHH
Q 013168 66 LGQL-ALSSTAMAISLASVTGFSVL-LGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFL-WIYAGKLLV 142 (448)
Q Consensus 66 ~g~~-~~aa~~~~~~i~~~~~~~~~-~gl~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~ 142 (448)
+|.. +..+|.++.++.+++...+. .++..+..|..++.. ++++|+.++..+....+..+.++.++++ +++++++..
T Consensus 5 fG~s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv~ 83 (451)
T PF03023_consen 5 FGASAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPIVR 83 (451)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6644 56799999999998733444 468999999999999 8888999999999888888888888876 889999999
Q ss_pred Hh--CCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhhhhhhHhhcccCCC---cchhH
Q 013168 143 LI--GQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLG---NLGGA 217 (448)
Q Consensus 143 ~~--~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~G---~~Gaa 217 (448)
++ +.+++..+.+.++++++++..++..+...+.+++|++++...+....+..++.-+...+++.. ..| +.+.+
T Consensus 84 ~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~~~~~~--~~~~~~i~~la 161 (451)
T PF03023_consen 84 LLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILSLLLLSN--SWGQENIYALA 161 (451)
T ss_pred HHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHH--hcCchHHHHHH
Confidence 88 557788899999999999999999999999999999999999998888887776665555443 366 88999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccccccCCCChHhHhcHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccCCChhhHHHHH
Q 013168 218 LAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVL 297 (448)
Q Consensus 218 ~a~~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~aa~ 297 (448)
++..++..+..++.+...++...+.+...+++ .+..|++++...|..+.....+....+++.+++.++++ ++++.
T Consensus 162 ~g~~~g~~~~~l~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G--~vs~l 236 (451)
T PF03023_consen 162 WGVLIGAIIQFLIQLPYLRRFGFRFRPKFDWR---DPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEG--SVSAL 236 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCcccccCCCC---ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc--HHHHH
Confidence 99999999999998888876654322222222 24578999999999999999999999999999999864 67889
Q ss_pred HHHHHHHHHHH-HHHHHHHHH-----------------------------------------HhhHhhhccC----CchH
Q 013168 298 SVCLNTIQTLY-AIPYGLGAA-----------------------------------------VRRVFGYVFS----NEKQ 331 (448)
Q Consensus 298 ~i~~~i~~~~~-~~~~~~~~a-----------------------------------------~~~~i~~lf~----~d~~ 331 (448)
+.+.++.++.. .+..+++++ +++++.++.. -|.+
T Consensus 237 ~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~ 316 (451)
T PF03023_consen 237 NYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAE 316 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHH
Confidence 99999888765 344566555 5666666653 3667
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhhHhHHhhccCcchhhHHHHHHHHHHHhHHHHHHHHHhcCCCchhHhHHHHHHHHHHH
Q 013168 332 VVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQT 411 (448)
Q Consensus 332 ~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~gi~~a~~~~~~~~~ 411 (448)
..+...+.+.+++.+.++.+++.++...+.+.||+|.+++.++++ .++.+.+.+.+. ..+|..|+.++..++..+.+
T Consensus 317 ~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~~~~~~~~-~~lni~l~~~l~--~~~g~~Glala~sl~~~i~~ 393 (451)
T PF03023_consen 317 DTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKTPVRISVIS-VVLNIILSILLV--PFFGVAGLALATSLSAIISA 393 (451)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhHHHHHHHH-HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 788899999999999999999999999999999999999999988 555666665554 55699999999999999999
Q ss_pred HHHHHHHHcC
Q 013168 412 LLLGIITTCT 421 (448)
Q Consensus 412 ~~~~~~~~~~ 421 (448)
++....++|+
T Consensus 394 ~~l~~~l~r~ 403 (451)
T PF03023_consen 394 LLLYILLRRR 403 (451)
T ss_pred HHHHHHHHHH
Confidence 9998888775
No 13
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.91 E-value=1.4e-22 Score=202.29 Aligned_cols=208 Identities=18% Similarity=0.233 Sum_probs=192.8
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccccc
Q 013168 30 VLSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQY 109 (448)
Q Consensus 30 ~~~~~~k~il~~~~P~~~~~~~~~~~~~id~~~v~~~g~~~~aa~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~ 109 (448)
..++.+|+++++++|.+++++.+.....+|+.+++++|++++|+++++.++..+. +.+..|++.+.+++++|++|+||+
T Consensus 230 ~~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~~~i~~l~-~~~~~gi~~a~~~lvgq~~Ga~~~ 308 (464)
T PRK00187 230 PSRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQIVSVA-FMVPVGLSYAVTMRVGQHYGAGRL 308 (464)
T ss_pred CCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCH
Confidence 3467899999999999999999999999999999999999999999999999986 999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCC--Ch---hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCc
Q 013168 110 QRIGTQTYTAIFCLFLVCFPLSFL-WIYAGKLLVLIGQ--DP---QISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSL 183 (448)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~--~~---~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~ 183 (448)
|++++..+.++.++.+++++++++ +.+.+++.+++.. ++ |+.+.+..|+++.+++.++..++.++.+++|+.|+
T Consensus 309 ~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~ 388 (464)
T PRK00187 309 LEARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKD 388 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCc
Confidence 999999999999999999988876 8889999999853 33 78899999999999999999999999999999999
Q ss_pred hhHHHHHHHHHH-HhhhhhhhHhhcccCCCcchhHHHHHHHHHHHHHHHHHHHhcc
Q 013168 184 IIPMFLSSCAAL-CLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFS 238 (448)
Q Consensus 184 ~~~~~~~~~~~~-~~~i~~~~~li~~~~~G~~Gaa~a~~i~~~~~~i~~~~~~~~~ 238 (448)
++.+++.++... ++++++++++.+.+++|+.|+|+++.+++++..++....++++
T Consensus 389 ~~~~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~~~ 444 (464)
T PRK00187 389 ARTTFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFEWK 444 (464)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999886 9999999999988889999999999999999988887666443
No 14
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.90 E-value=8.3e-22 Score=197.09 Aligned_cols=208 Identities=15% Similarity=0.204 Sum_probs=195.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccccc
Q 013168 31 LSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQ 110 (448)
Q Consensus 31 ~~~~~k~il~~~~P~~~~~~~~~~~~~id~~~v~~~g~~~~aa~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~ 110 (448)
.++.+|+++++++|.+++++...+...++..+++++|++++|+++++.++.++. +.+..|++.+.++.++|++|+||+|
T Consensus 234 ~~~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~-~~~~~gl~~a~~~~v~~~~Ga~~~~ 312 (456)
T PRK01766 234 DWAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLGTVTVAAHQIALNFSSLL-FMLPLSLAMALTIRVGFELGAGRTL 312 (456)
T ss_pred CHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHH
Confidence 467899999999999999999999999999999999999999999999999986 8899999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCchhHHHH
Q 013168 111 RIGTQTYTAIFCLFLVCFPLSFL-WIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFL 189 (448)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 189 (448)
++++..+.++.+++.+++++.++ +.+.+++..++..|+++.+.+..|+++..+..++..+.....+++||.|+++.++.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~ 392 (456)
T PRK01766 313 DARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIFF 392 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHHH
Confidence 99999999999999999988875 88999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH-HhhhhhhhHhhcccCCCcchhHHHHHHHHHHHHHHHHHHHhccc
Q 013168 190 SSCAAL-CLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFST 239 (448)
Q Consensus 190 ~~~~~~-~~~i~~~~~li~~~~~G~~Gaa~a~~i~~~~~~i~~~~~~~~~~ 239 (448)
.++.+. ++++++.+++.+.+++|+.|+|+++.+++++..++.++++++.+
T Consensus 393 ~~~~~~~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~~~ 443 (456)
T PRK01766 393 ITFIAYWVLGLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRKLQ 443 (456)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999876 78999999988878899999999999999999998887776544
No 15
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.90 E-value=2.3e-21 Score=192.04 Aligned_cols=213 Identities=19% Similarity=0.227 Sum_probs=199.0
Q ss_pred ccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcc
Q 013168 27 TWGVLSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGA 106 (448)
Q Consensus 27 ~~~~~~~~~k~il~~~~P~~~~~~~~~~~~~id~~~v~~~g~~~~aa~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~ 106 (448)
.++..++.+|+++++++|..++++.......+-+.+++++|++.+|+++++.++.++. +++..|++++.+++++|++|+
T Consensus 232 ~~~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~-~~~~~gi~~a~~~lvG~~~Ga 310 (455)
T COG0534 232 LLKPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTVALAAYGIALRIASFI-FMPPFGIAQAVTILVGQNLGA 310 (455)
T ss_pred ccCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCC
Confidence 4455679999999999999999999999999999999999999999999999999996 999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCchh
Q 013168 107 QQYQRIGTQTYTAIFCLFLVCFPLSFL-WIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLII 185 (448)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~ 185 (448)
||+|++++..+.+..+++++++...++ +++++++..+|..++|+.+.+..++++..+..++.+.+....+.+||.|+++
T Consensus 311 ~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~ 390 (455)
T COG0534 311 GNYKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAK 390 (455)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcH
Confidence 999999999999999999999998875 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-HHhhhhhhhHhhcccCCCcchhHHHHHHHHHHHHHHHHHHHhccccc
Q 013168 186 PMFLSSCAA-LCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTAC 241 (448)
Q Consensus 186 ~~~~~~~~~-~~~~i~~~~~li~~~~~G~~Gaa~a~~i~~~~~~i~~~~~~~~~~~~ 241 (448)
.+++.++.+ +.+.+++.+++.+.. +|..|.|++..+++.+..++..+++++++|+
T Consensus 391 ~~~~~~~~~~~~~~lp~~~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~ 446 (455)
T COG0534 391 IPFIISLLSYWGFRLPLAYLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRWR 446 (455)
T ss_pred HHHHHHHHHHHHHHHhHHHHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 999888885 566788888888665 9999999999999999999999998877654
No 16
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.89 E-value=3.2e-21 Score=192.72 Aligned_cols=211 Identities=15% Similarity=0.063 Sum_probs=195.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccccc
Q 013168 31 LSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQ 110 (448)
Q Consensus 31 ~~~~~k~il~~~~P~~~~~~~~~~~~~id~~~v~~~g~~~~aa~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~ 110 (448)
.++.+|++++++.|..++.....+...+.+.+++++|++++|+++++.++.++. +.+..|++++.+++++|++|++|.|
T Consensus 254 ~~~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G~~~~Aa~~I~~~i~~~~-~~~~~gi~~A~~~lvg~~~Ga~~~~ 332 (478)
T PRK10189 254 NFAIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMGTSVIAGNFIAFSIAALI-NLPGNALGSASTIITGTRLGKGQIA 332 (478)
T ss_pred CHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 468899999999999999999999999988999999999999999999999986 8899999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCchhHHHH
Q 013168 111 RIGTQTYTAIFCLFLVCFPLSFL-WIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFL 189 (448)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 189 (448)
++++..+.+..++.++++.++++ +++++++..+|.+|+|+.+.+..++++.++..++.+++....+.+||.|+++.+++
T Consensus 333 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~~ 412 (478)
T PRK10189 333 QAERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAMW 412 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHHH
Confidence 99999999999999999988876 88899999999999999999999999999999999999999999999999999988
Q ss_pred HHHHH-HHhhhhhhhHhhcccCCCcchhHHHHHHHHHHHHHHHHHHHhcccccc
Q 013168 190 SSCAA-LCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACA 242 (448)
Q Consensus 190 ~~~~~-~~~~i~~~~~li~~~~~G~~Gaa~a~~i~~~~~~i~~~~~~~~~~~~~ 242 (448)
.++.. +++.+++.+++.+..++|+.|+|++..+++.+..++.++++++.+|++
T Consensus 413 i~~~~~~~v~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~~~~~W~~ 466 (478)
T PRK10189 413 VSMLGMWGCRVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRMVSGRWLW 466 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCcccc
Confidence 77665 478888888887767799999999999999999999888887777654
No 17
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.89 E-value=1.6e-18 Score=169.38 Aligned_cols=377 Identities=14% Similarity=0.057 Sum_probs=289.3
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhhc-CChh-HHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHhhcccccchHH
Q 013168 37 KQGYIAAPMVAVTLSQYLLQVVSMMMVGH-LGQL-ALSSTAMAISLASVTGFSVLLG-MASALETLCGQAYGAQQYQRIG 113 (448)
Q Consensus 37 ~il~~~~P~~~~~~~~~~~~~id~~~v~~-~g~~-~~aa~~~~~~i~~~~~~~~~~g-l~~~~~~~~s~~~g~~~~~~~~ 113 (448)
.++|.+.-+....+..-+.+++-..+++. +|.. ...|+.++.++.+++--.+..| ++++..|...+...+++.|+.+
T Consensus 8 sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~~~~~ 87 (518)
T COG0728 8 SLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGEEAAR 87 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchhhHHH
Confidence 34444444445555556666666666666 8874 6679999999999875555544 5899999999999888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHh-CC--ChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCchhHHHH
Q 013168 114 TQTYTAIFCLFLVCFPLSFL-WIYAGKLLVLI-GQ--DPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFL 189 (448)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~-~~--~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 189 (448)
+...........+.+.++++ .++++++...+ +. +++....+....+++.|..++..+.....+++++.++...+.+
T Consensus 88 ~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F~~~a~ 167 (518)
T COG0728 88 FFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNRFFIPAF 167 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeechhhh
Confidence 88887776777777777776 77788888454 33 2333335788889999999999999999999999999999998
Q ss_pred HHHHHHHhhhhhhhHhhcccCCCcchhHHHHHHHHHHHHHHHHHHHhcccccccccCCCChHhHhcHHHHHHHHhHHHHH
Q 013168 190 SSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVM 269 (448)
Q Consensus 190 ~~~~~~~~~i~~~~~li~~~~~G~~Gaa~a~~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 269 (448)
..+..++.-+.....+.........+.++++.++-+.+.++.+..++|.+...+.+..++ -+.+|++.+...|..+.
T Consensus 168 aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~~~~~---~~~lk~~~~~~~p~~l~ 244 (518)
T COG0728 168 APVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPRFGFK---DPGLKRFLKLMLPALLG 244 (518)
T ss_pred hHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCCCC---chhHHHHHHHHHHHHHH
Confidence 888877776644444443322236788999999999999999999987764333333222 25778999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHHH-HHHHHHHHH-------------------------------
Q 013168 270 ICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLY-AIPYGLGAA------------------------------- 317 (448)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~g~~~~~~aa~~i~~~i~~~~~-~~~~~~~~a------------------------------- 317 (448)
....++...+++.+++.+.+. +++.+..++++.++.. .+..++++.
T Consensus 245 ~sisQi~lli~~~iAS~l~~G--sis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~~~~l~~~i~l~lll 322 (518)
T COG0728 245 VSISQINLLIDTAIASFLAEG--SVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEFLKLLDWGLRLTLLL 322 (518)
T ss_pred HHHHHHHHHHHHHHHHhhccc--cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHH
Confidence 999999999999999999864 5677888888888765 445666666
Q ss_pred ----------HhhHhhhcc-C---CchHHHHHHHHHHHHHHHHHHHhhHHhhHhHHhhccCcchhhHHHHHHHHHHHhHH
Q 013168 318 ----------VRRVFGYVF-S---NEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIP 383 (448)
Q Consensus 318 ----------~~~~i~~lf-~---~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 383 (448)
+++++.++. . -+++......+.+.++..+.++.+...++...+++.+|+|.|+++.+++ .++.+.
T Consensus 323 ~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP~~i~ii~-~~~n~~ 401 (518)
T COG0728 323 TLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTPMKIAIIS-LVVNIL 401 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcChHHHHHH-HHHHHH
Confidence 556665554 2 2455567899999999999999999999999999999999999999998 344444
Q ss_pred HHHHHHHhcCCCchhHhHHHHHHHHHHHHHHHHHHHcC
Q 013168 384 TAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTCT 421 (448)
Q Consensus 384 ~~~~l~~~~~~g~~gi~~a~~~~~~~~~~~~~~~~~~~ 421 (448)
+. +...+.+|..|+.++..++.++++.+.++.++|+
T Consensus 402 l~--~~l~~~~~~~giala~s~a~~~~~~ll~~~l~k~ 437 (518)
T COG0728 402 LN--LLLIPPLGHVGLALATSLAAWVNALLLYYLLRKR 437 (518)
T ss_pred HH--HHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44 4445667899999999999888888888777774
No 18
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.89 E-value=4e-21 Score=191.47 Aligned_cols=207 Identities=17% Similarity=0.148 Sum_probs=190.2
Q ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcCCh-hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccc
Q 013168 29 GVLSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQ-LALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQ 107 (448)
Q Consensus 29 ~~~~~~~k~il~~~~P~~~~~~~~~~~~~id~~~v~~~g~-~~~aa~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~ 107 (448)
+..++.+|++++++.|..+++....+...+.+.+++++|+ +++|+++++.++..+. +.+..|++.+.++++||++|+|
T Consensus 227 ~~~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~~~~lAa~~i~~~i~~~~-~~~~~gi~~a~~~lvg~~~Ga~ 305 (453)
T PRK09575 227 RFNWSLAPKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGSALTVGAYAIVGYLMVLY-YLVAEGIAEGMQPPVSYYFGAR 305 (453)
T ss_pred CcCHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHhcCC
Confidence 3456789999999999999999999999999999999985 6899999999999986 9999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCC-ChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCchh
Q 013168 108 QYQRIGTQTYTAIFCLFLVCFPLSFL-WIYAGKLLVLIGQ-DPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLII 185 (448)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~-~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~ 185 (448)
|+|++++..+.++.+++..+++++++ +.+.+++..+++. |+|+.+.+.+|+++..++.++..+.....+++||.|+++
T Consensus 306 ~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~ 385 (453)
T PRK09575 306 QYDNIKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGG 385 (453)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcH
Confidence 99999999999999999999998886 8899999999985 789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhHhhcccCCCcchhHHHHHHHHHHHHHHHHHHHhcc
Q 013168 186 PMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFS 238 (448)
Q Consensus 186 ~~~~~~~~~~~~~i~~~~~li~~~~~G~~Gaa~a~~i~~~~~~i~~~~~~~~~ 238 (448)
..++.++...+++++..+++... +|+.|+|+++.+++++..++..++++++
T Consensus 386 ~~~~~~~~~~~v~ip~~~ll~~~--~G~~Gvw~a~~~~~~~~~~~~~~~~~~~ 436 (453)
T PRK09575 386 KALFISIGNMLIQLPFLFILPKW--LGVDGVWLAMPLSNIALSLVVAPMLWRD 436 (453)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHH--HCcchHhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888999998888644 7999999999999999888887766543
No 19
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.85 E-value=7.2e-19 Score=178.32 Aligned_cols=206 Identities=14% Similarity=0.136 Sum_probs=187.3
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccccc
Q 013168 31 LSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQ 110 (448)
Q Consensus 31 ~~~~~k~il~~~~P~~~~~~~~~~~~~id~~~v~~~g~~~~aa~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~ 110 (448)
.++.+|++++.+.|..++++...+...+|+.+.+.+|++++++++.+.++.+++...+..+++.+..|.++|++|++|+|
T Consensus 218 ~~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~ 297 (502)
T TIGR01695 218 RDPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWN 297 (502)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 45788999999999999999999999999998667999999999999999987634467899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCC----ChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCchh
Q 013168 111 RIGTQTYTAIFCLFLVCFPLSFL-WIYAGKLLVLIGQ----DPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLII 185 (448)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~----~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~ 185 (448)
++++.++++..+...+++++++. ..+++++..++.+ ++|..+.+..++++++++.++..+.....+.+++.|+++
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~ 377 (502)
T TIGR01695 298 ELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTR 377 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCc
Confidence 99999999999999999998875 8889999988765 456788899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhHhhcccCCCcchhHHHHHHHHHHHHHHHHHHHhcc
Q 013168 186 PMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFS 238 (448)
Q Consensus 186 ~~~~~~~~~~~~~i~~~~~li~~~~~G~~Gaa~a~~i~~~~~~i~~~~~~~~~ 238 (448)
.+++.++...++|++++++++.. +|..|+++|+.+++.+..++..++.+|+
T Consensus 378 ~~~~~~~~~~~i~i~l~~~l~~~--~G~~G~~~a~~i~~~~~~~~~~~~~~~~ 428 (502)
T TIGR01695 378 TPFINSVISVVLNALLSLLLIFP--LGLVGIALATSAASMVSSVLLYLMLNRR 428 (502)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999844 8999999999999999999887777544
No 20
>PRK10459 colanic acid exporter; Provisional
Probab=99.84 E-value=5.9e-17 Score=163.78 Aligned_cols=358 Identities=12% Similarity=0.076 Sum_probs=262.8
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHhhc-CChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccccchHHH
Q 013168 36 KKQGYIAAPMVAVTLSQYLLQVVSMMMVGH-LGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGT 114 (448)
Q Consensus 36 k~il~~~~P~~~~~~~~~~~~~id~~~v~~-~g~~~~aa~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~ 114 (448)
++..+-+....++++...+.+++....+.| +|+++.|.++.+..+..+.......|++.+.. |. +|. .++
T Consensus 5 ~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~aii----~~---~~~--~~~ 75 (492)
T PRK10459 5 EKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASII----QR---QDI--SHL 75 (492)
T ss_pred HHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHHHHH----hc---ccC--CHH
Confidence 557777888899999999999999999999 89999999999999999865556667766542 21 121 123
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCchhHHHHHHHH
Q 013168 115 QTYTAIFCLFLVCFPLSFL-WIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCA 193 (448)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 193 (448)
......++....++++.++ +.+++++..+++ +++ ....+++..+..++..+.....+.++...+.+......+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~~ 150 (492)
T PRK10459 76 QLSTLYWLNVGLGIVVFVLVFLLSPLIADFYH-NPE----LAPLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEIS 150 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-Chh----hHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHH
Confidence 4556666667777666665 556666665554 333 2356778888888888888899999998888888888888
Q ss_pred HHHhhhhhhhHhhcccCCCcchhHHHHHHHHHHHHHHHHHHHhcccccccccCCCChHhHhcHHHHHHHHhHHHHHHHHH
Q 013168 194 ALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLE 273 (448)
Q Consensus 194 ~~~~~i~~~~~li~~~~~G~~Gaa~a~~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 273 (448)
..++..+..+.+.+ .+.|+.+.+++..++..+..++..+..+ ++++ ++.++ +++.+|++++.+.|...+....
T Consensus 151 ~~i~~~~~~i~~~~-~~~g~~~l~~~~~~~~~~~~l~~~~~~~-~~~~--~~~~~---~~~~~k~ll~~~~~~~~~~~~~ 223 (492)
T PRK10459 151 AVVAGFTFAVVSAF-FWPGALAAILGYLVNSSVRTLLFGYFGR-KIYR--PALHF---SLASVKPNLSFGAWQTAERIIN 223 (492)
T ss_pred HHHHHHHHHHHHHH-HCCcHHHHHHHHHHHHHHHHHHHHHHhc-ccCC--cccee---cHHHHHHHHhhhHHHHHHHHHH
Confidence 87777766665554 4578999999999998887765543332 2211 11112 2456789999999999999999
Q ss_pred HHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHHHH-HHHHHHHH-----------------------------------
Q 013168 274 WWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYA-IPYGLGAA----------------------------------- 317 (448)
Q Consensus 274 ~~~~~~~~~~~~~~g~~~~~~aa~~i~~~i~~~~~~-~~~~~~~a----------------------------------- 317 (448)
.....+++++++.+.+. .+++.|+.+.++.++... +...++..
T Consensus 224 ~~~~~~d~~~lg~~lg~-~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 302 (492)
T PRK10459 224 YLNTNIDTILIGRILGA-EVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKIQDDTEKLRVGFLKLLSVLGIINFPLLL 302 (492)
T ss_pred HHHhcCchhhhhHhhch-HhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999887765442 356889999988775432 22222222
Q ss_pred ----HhhHhhhccCCchHHHHHHHHHHHHHHHHHHHhhHHhhHhHHhhccCcchhhHHHHHHHHHHHhHHHHHHHHHhcC
Q 013168 318 ----VRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILGFWLK 393 (448)
Q Consensus 318 ----~~~~i~~lf~~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~ 393 (448)
++|++..++..++ ...+...+.+.++..++..+.......+++.||+|.+++.+++. .++.+|..+.+.. .
T Consensus 303 ~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~-~~~~i~~~~~~~~--~ 377 (492)
T PRK10459 303 GLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWNVFK-TFLFIPAIVIGGQ--L 377 (492)
T ss_pred HHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHH-HHHHHHHHHHHHh--h
Confidence 4566665554433 34577899999999999999999999999999999999999877 5667777666653 4
Q ss_pred CCchhHhHHHHHHHHHHHHHHHHHHHc
Q 013168 394 FRGRGLWIGIQAGAFTQTLLLGIITTC 420 (448)
Q Consensus 394 ~g~~gi~~a~~~~~~~~~~~~~~~~~~ 420 (448)
+|..|+.++..+++.+...+..+..+|
T Consensus 378 ~G~~g~a~a~~i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 378 AGLIGVALGFLLVQIINTILSYFLMIK 404 (492)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999988888776634
No 21
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.81 E-value=7.5e-18 Score=166.89 Aligned_cols=200 Identities=21% Similarity=0.185 Sum_probs=170.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccccch
Q 013168 32 SGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQR 111 (448)
Q Consensus 32 ~~~~k~il~~~~P~~~~~~~~~~~~~id~~~v~~~g~~~~aa~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~ 111 (448)
++.+|++++.+.|..++++.......+-+.+++++|++++|+++++.++.++. +.+..|++++.+++++|++|+||+|+
T Consensus 228 ~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~G~~alAa~~I~~~i~~~~-~~~~~gl~~a~~~lvg~~~Ga~~~~~ 306 (441)
T PRK10367 228 RGNFRRLLALNRDIMLRSLLLQLCFGAITVLGARLGSDIIAVNAVLMTLLTFT-AYALDGFAYAVEAHSGQAYGARDGSQ 306 (441)
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHcCCCHHH
Confidence 35789999999999999999999999999999999999999999999999996 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC---chhHH
Q 013168 112 IGTQTYTAIFCLFLVCFPLSFL-WIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQS---LIIPM 187 (448)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~---~~~~~ 187 (448)
+++..+.+..++.+++.+++++ +.+++++..+|.+|+|+.+.+..++++..+..+.........+++++.. +++.+
T Consensus 307 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~dt~~~ 386 (441)
T PRK10367 307 LLDVWRAACRQSGIVALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEMRNS 386 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHH
Confidence 9999999999999999998886 8889999999999999999999999999876443324444444455544 48888
Q ss_pred HHHHHHHHHhhhhhhhHhhcccCCCcchhHHHHHHHHHHHHHHHHHHHhcc
Q 013168 188 FLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFS 238 (448)
Q Consensus 188 ~~~~~~~~~~~i~~~~~li~~~~~G~~Gaa~a~~i~~~~~~i~~~~~~~~~ 238 (448)
++.++....+ ..+.. +++|+.|.|++..+++.+..++..++++++
T Consensus 387 ~~~~~~~~~~----~~~~~--~~~g~~Gvw~a~~~~~~~~~i~~~~~~~~~ 431 (441)
T PRK10367 387 MAVAAAGFAL----TLLTL--PWLGNHGLWLALTVFLALRGLSLAAIWRRH 431 (441)
T ss_pred HHHHHHHHHH----HHHHH--HHcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877776432 11122 347999999999999999999988777654
No 22
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.77 E-value=2.6e-19 Score=153.05 Aligned_cols=160 Identities=23% Similarity=0.387 Sum_probs=154.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccccchHHHHHHHHHHHH
Q 013168 44 PMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCL 123 (448)
Q Consensus 44 P~~~~~~~~~~~~~id~~~v~~~g~~~~aa~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 123 (448)
|.+++++...+...+|+.+++++|++++++++++.++.++. ..+..|++.|..+.+||++|++|+|++++..+.++.+.
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~-~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~ 79 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSIL-FMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLS 79 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHH-HHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH-hhhcccccccccceeecccccccccccccccccccccc
Confidence 89999999999999999999999999999999999999986 88999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHhHHHHHHHhCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH-Hhhhhh
Q 013168 124 FLVCFPLSFL-WIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAAL-CLHIPI 201 (448)
Q Consensus 124 ~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~i~~ 201 (448)
.++++++.++ +.+.+++..+++.|+|+.+.+.+|+++..++.|+..+.....+++++.|+++..++.++... ++|+++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l 159 (162)
T PF01554_consen 80 LIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIPL 159 (162)
T ss_dssp HHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHHH
T ss_pred hhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhH
Confidence 9999999986 88899999999999999999999999999999999999999999999999999999999988 999999
Q ss_pred hhH
Q 013168 202 CWS 204 (448)
Q Consensus 202 ~~~ 204 (448)
+|+
T Consensus 160 ~yl 162 (162)
T PF01554_consen 160 AYL 162 (162)
T ss_dssp HHH
T ss_pred HhC
Confidence 874
No 23
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.77 E-value=4.8e-16 Score=154.25 Aligned_cols=211 Identities=16% Similarity=0.128 Sum_probs=193.0
Q ss_pred ccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcc
Q 013168 27 TWGVLSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGA 106 (448)
Q Consensus 27 ~~~~~~~~~k~il~~~~P~~~~~~~~~~~~~id~~~v~~~g~~~~aa~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~ 106 (448)
++....+..|++++...|.+++....++..++|+.+.+.+++.++++++.++++.+++...+..++++...|..|+...+
T Consensus 189 ~~~~~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~ 268 (451)
T PF03023_consen 189 KFDWRDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAE 268 (451)
T ss_pred cCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33434567999999999999999999999999999999999999999999999999986788889999999999999999
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCC----ChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Q 013168 107 QQYQRIGTQTYTAIFCLFLVCFPLSFL-WIYAGKLLVLIGQ----DPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQ 181 (448)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~----~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~ 181 (448)
||.++.++..++.+.....+.+|+++. +.+++++..++.+ ++|-.+.....+++++++.|++.+...+...+.+.
T Consensus 269 ~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~ 348 (451)
T PF03023_consen 269 GDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYAL 348 (451)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999875 8899999988742 45556788899999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHhhhhhhhHhhcccCCCcchhHHHHHHHHHHHHHHHHHHHhccc
Q 013168 182 SLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFST 239 (448)
Q Consensus 182 ~~~~~~~~~~~~~~~~~i~~~~~li~~~~~G~~Gaa~a~~i~~~~~~i~~~~~~~~~~ 239 (448)
+++|.++..++.+.++|+++++++... +|..|.++|+.++.++..++..++++|+.
T Consensus 349 ~~~~~~~~~~~~~~~lni~l~~~l~~~--~g~~Glala~sl~~~i~~~~l~~~l~r~~ 404 (451)
T PF03023_consen 349 GDTKTPVRISVISVVLNIILSILLVPF--FGVAGLALATSLSAIISALLLYILLRRRL 404 (451)
T ss_pred cCcHhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999998855 99999999999999999999888876553
No 24
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.76 E-value=1.6e-16 Score=160.59 Aligned_cols=203 Identities=18% Similarity=0.153 Sum_probs=176.3
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhc-CC------hhHHHHH----HHHHHHHHHHHHHHHHHHHHhHHH
Q 013168 30 VLSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGH-LG------QLALSST----AMAISLASVTGFSVLLGMASALET 98 (448)
Q Consensus 30 ~~~~~~k~il~~~~P~~~~~~~~~~~~~id~~~v~~-~g------~~~~aa~----~~~~~i~~~~~~~~~~gl~~~~~~ 98 (448)
..++.+|++++.+.|.+++++...+...+|+.++++ ++ .++.+.+ +++.++.+++ ..+..+++.+..|
T Consensus 219 ~~~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~-~~~~~~l~~~~~p 297 (488)
T TIGR02900 219 EGKALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFP-AVITSSLSTALVP 297 (488)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhH-HHHHHHHHHHHHH
Confidence 346789999999999999999999999999999987 32 1222222 3556677776 6788999999999
Q ss_pred HHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 013168 99 LCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFL-WIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRY 177 (448)
Q Consensus 99 ~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~ 177 (448)
.++|.+|++|+|+.++..+++..+...+++++++. ..++++++.++.+++ ++.+++++++++.++..+.....++
T Consensus 298 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~----~~~~~l~i~~~~~~~~~~~~~~~~~ 373 (488)
T TIGR02900 298 DISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRP----DAGNFIRVLAPSFPFLYFSAPLQSI 373 (488)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998875 888999998887543 3578899999999999999999999
Q ss_pred HHhcCchhHHHHHHHHHHHhhhhhhhHhhcccCCCcchhHHHHHHHHHHHHHHHHHHHhc
Q 013168 178 FQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKF 237 (448)
Q Consensus 178 l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~G~~Gaa~a~~i~~~~~~i~~~~~~~~ 237 (448)
+++.|+++..++.++...++|++++++++..+.+|+.|+++++.+++.+..++..++.+|
T Consensus 374 l~~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~ 433 (488)
T TIGR02900 374 LQGLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKK 433 (488)
T ss_pred HHhcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999885566999999999999999999998877754
No 25
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.74 E-value=8.2e-15 Score=147.77 Aligned_cols=348 Identities=16% Similarity=0.150 Sum_probs=247.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhc-CChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccccch
Q 013168 33 GEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGH-LGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQR 111 (448)
Q Consensus 33 ~~~k~il~~~~P~~~~~~~~~~~~~id~~~v~~-~g~~~~aa~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~ 111 (448)
...+++.|-+.-...+++...+..++-...+.| +|+++.|.++.+.++..++......|+..+....++++.+++++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~~~~ 82 (480)
T COG2244 3 SLKKKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGEYLL 82 (480)
T ss_pred hHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccHHHH
Confidence 345677888888889999999999999999999 8999999999999999988555568888888888888866555555
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCchhHHHHH
Q 013168 112 IGTQ-TYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLS 190 (448)
Q Consensus 112 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 190 (448)
.... ......+....+++......+..+. + +.....+++..+..+.........+.+|+.++.+.....
T Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (480)
T COG2244 83 LILLSVLLLLLLALILLLLLLLIAYLLAPI------D----PVLALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALS 152 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc------C----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhH
Confidence 4544 4444444444444433332222222 2 233455788899999999999999999999999988887
Q ss_pred HHHHHHhhhhhhhHhhcccCCCcchhHHHHHHHHHHHHHHHHHHHhcccccccccCCCChHhHhcHHHHHHHHhHHHHHH
Q 013168 191 SCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMI 270 (448)
Q Consensus 191 ~~~~~~~~i~~~~~li~~~~~G~~Gaa~a~~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 270 (448)
.+.. ..-+...+.+.. .......++...+..........+..+.++. ..+.. .+..++..++.++.++|..+..
T Consensus 153 ~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~l~~~~p~~~~~ 226 (480)
T COG2244 153 IVSS-IFLLAAVFALLF---AALGLAVWALVLGAVVSLLVLLILLGKKKRG-LKRPI-LRFSLALLKELLRFGLPLLLSS 226 (480)
T ss_pred HHHH-HHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh-ccccc-cCchhHHHHHHHHHhhHHHHHH
Confidence 4444 222222222221 3455666777777777666665555422211 11111 1113567889999999999999
Q ss_pred HHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------
Q 013168 271 CLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAA--------------------------------- 317 (448)
Q Consensus 271 ~~~~~~~~~~~~~~~~~g~~~~~~aa~~i~~~i~~~~~~~~~~~~~a--------------------------------- 317 (448)
....+...+++++++++-+. ..++.|+.+.++......+..+++.+
T Consensus 227 ~~~~l~~~~D~~~i~~~l~~-~~vG~Y~~a~~i~~~~~~~~~~l~~~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (480)
T COG2244 227 LLNFLFTNIDTLLLGLFLGP-AQVGIYSAAQRLVSLLLIVASALNRVLFPALSRAYAEGDRKALKKLLRQSLKLLLLISI 305 (480)
T ss_pred HHHHHHHHHHHHHHHHHhhh-hHheecccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999887766442 35577888888888888888788777
Q ss_pred --------HhhHhhhccC-CchHHHHHHHHHHHHHHHHHHHhhHHhhHhHHhhccCcchhhHHHHHHHHHHHhHHHHHHH
Q 013168 318 --------VRRVFGYVFS-NEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAIL 388 (448)
Q Consensus 318 --------~~~~i~~lf~-~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l 388 (448)
+++++..++. ++.+ .+...+.+.++..++.++.......+++.|+++..++.+.++. +..+.+.+.+
T Consensus 306 p~~~~l~~~~~~~i~~~fg~~~~---~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-i~~~~l~~~l 381 (480)
T COG2244 306 PALLGLLLLAPPIITLLFGEKYA---SAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLLLISLISA-LLNLILNLLL 381 (480)
T ss_pred HHHHHHHHHHhhhheeecCCccc---chhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHH-HHHHHHHhHH
Confidence 4555555554 3332 2788899999999999999999999999999999999999883 4444444444
Q ss_pred HHhcCCCchhHhHHH
Q 013168 389 GFWLKFRGRGLWIGI 403 (448)
Q Consensus 389 ~~~~~~g~~gi~~a~ 403 (448)
. +++|..|...+.
T Consensus 382 i--~~~g~~g~~~a~ 394 (480)
T COG2244 382 I--PRFGLIGAAIAT 394 (480)
T ss_pred H--HhhhhhhHHHHH
Confidence 4 556888888877
No 26
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.74 E-value=1.4e-14 Score=141.91 Aligned_cols=213 Identities=14% Similarity=0.117 Sum_probs=193.1
Q ss_pred CcccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 013168 25 STTWGVLSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAY 104 (448)
Q Consensus 25 ~~~~~~~~~~~k~il~~~~P~~~~~~~~~~~~~id~~~v~~~g~~~~aa~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~ 104 (448)
+++|....+..|++++...|..++....++..++|+.+.+.+.+.+++.+..+.++.+++.-.+..++++...|..||..
T Consensus 221 ~p~~~~~~~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~ 300 (518)
T COG0728 221 KPRFGFKDPGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHA 300 (518)
T ss_pred CCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 34555545899999999999999999999999999999999999999999999999999977999999999999999999
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCC----ChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 013168 105 GAQQYQRIGTQTYTAIFCLFLVCFPLSFL-WIYAGKLLVLIGQ----DPQISHEVGKFMIWLLPALFAYATMQPLIRYFQ 179 (448)
Q Consensus 105 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~----~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~ 179 (448)
.++|.++.++..+.++.++.++++|.++. ..+++|+...+.+ +++-.....+.+..++++.+++.+...+...++
T Consensus 301 ~~~~~~~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FY 380 (518)
T COG0728 301 ANGDWPEFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFY 380 (518)
T ss_pred hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999985 8889999988742 344456777889999999999999999999999
Q ss_pred hcCchhHHHHHHHHHHHhhhhhhhHhhcccCCCcchhHHHHHHHHHHHHHHHHHHHhccc
Q 013168 180 SQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFST 239 (448)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~G~~Gaa~a~~i~~~~~~i~~~~~~~~~~ 239 (448)
+++++|.++.+.+++.++|+.+++.+.. .+|..|.++++.++.++.+.+.++..+|+.
T Consensus 381 Ar~d~ktP~~i~ii~~~~n~~l~~~l~~--~~~~~giala~s~a~~~~~~ll~~~l~k~~ 438 (518)
T COG0728 381 AREDTKTPMKIAIISLVVNILLNLLLIP--PLGHVGLALATSLAAWVNALLLYYLLRKRL 438 (518)
T ss_pred HccCCCcChHHHHHHHHHHHHHHHHHHh--hccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999988774 489999999999999999999887776554
No 27
>PRK15099 O-antigen translocase; Provisional
Probab=99.73 E-value=1e-15 Score=151.30 Aligned_cols=202 Identities=11% Similarity=0.050 Sum_probs=175.0
Q ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh-cCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccc
Q 013168 29 GVLSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVG-HLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQ 107 (448)
Q Consensus 29 ~~~~~~~k~il~~~~P~~~~~~~~~~~~~id~~~v~-~~g~~~~aa~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~ 107 (448)
+..++.+|++++++.|..+++....+....|+.+++ ++|++++|+|+.+.++.+.+...+..+++++..|.++|. +
T Consensus 208 ~~~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~ 284 (416)
T PRK15099 208 SWDNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---T 284 (416)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---C
Confidence 334678999999999999999999999999999997 599999999999999987544788999999999999995 5
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCchhH
Q 013168 108 QYQRIGTQTYTAIFCLFLVCFPLSFL-WIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIP 186 (448)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~ 186 (448)
|+|+.++..++.......++++++++ ++++++++.++.+++ ++++.+++++++++.++...+..+...+.+.++.+.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~ 362 (416)
T PRK15099 285 EKRDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRF 362 (416)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77889999999999998888888775 789999999988765 455788999999988888777776666667788888
Q ss_pred HHHHHHHHHHhhhhhhhHhhcccCCCcchhHHHHHHHHHHHHHHHHHHHhc
Q 013168 187 MFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKF 237 (448)
Q Consensus 187 ~~~~~~~~~~~~i~~~~~li~~~~~G~~Gaa~a~~i~~~~~~i~~~~~~~~ 237 (448)
.....+...+++++++++++. .+|..|+++++.+++.+..++......+
T Consensus 363 ~~~~~~~~~~l~i~l~~~li~--~~G~~G~a~a~~is~~~~~~~~~~~~~~ 411 (416)
T PRK15099 363 YILAEVSQFTLLTGFAHWLIP--LHGALGAAQAYMATYIVYFSLCCGVFLL 411 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888889999999999999994 4999999999999999999887766543
No 28
>PRK10459 colanic acid exporter; Provisional
Probab=99.67 E-value=4.1e-14 Score=143.14 Aligned_cols=201 Identities=15% Similarity=0.106 Sum_probs=175.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhc-CChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccccc
Q 013168 31 LSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGH-LGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQY 109 (448)
Q Consensus 31 ~~~~~k~il~~~~P~~~~~~~~~~~~~id~~~v~~-~g~~~~aa~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~ 109 (448)
.++..|++++++.|.+.+++...+...+|+.++|+ +|++++|.|+.+.++.+++...+...++....|..++. ++|.
T Consensus 202 ~~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~ 279 (492)
T PRK10459 202 SLASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDT 279 (492)
T ss_pred cHHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCH
Confidence 35778999999999999999999999999999999 79999999999999998764555666778889999886 5678
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCchhHHH
Q 013168 110 QRIGTQTYTAIFCLFLVCFPLSFL-WIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMF 188 (448)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 188 (448)
++.++.+++...+...+++|+.+. ..++++++.++.+++ +..+...++++++...+..+.......+++.|++|...
T Consensus 280 ~~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~ 357 (492)
T PRK10459 280 EKLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSF 357 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhH
Confidence 889999999999999999998875 888999998876554 56788999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhHhhcccCCCcchhHHHHHHHHHHHHHHHHHHHhc
Q 013168 189 LSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKF 237 (448)
Q Consensus 189 ~~~~~~~~~~i~~~~~li~~~~~G~~Gaa~a~~i~~~~~~i~~~~~~~~ 237 (448)
..+++..+++++..+.+.. .+|+.|+++++.+++.+..++..++..|
T Consensus 358 ~~~~~~~~~~i~~~~~~~~--~~G~~g~a~a~~i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 358 KWNVFKTFLFIPAIVIGGQ--LAGLIGVALGFLLVQIINTILSYFLMIK 404 (492)
T ss_pred HHHHHHHHHHHHHHHHHHh--hccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999998888777774 4899999999999999988888776643
No 29
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.63 E-value=7.9e-14 Score=140.63 Aligned_cols=191 Identities=16% Similarity=0.188 Sum_probs=174.2
Q ss_pred ccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhc-CChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhc
Q 013168 27 TWGVLSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGH-LGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYG 105 (448)
Q Consensus 27 ~~~~~~~~~k~il~~~~P~~~~~~~~~~~~~id~~~v~~-~g~~~~aa~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g 105 (448)
.++..++.+|+.++.+.|..++++...+.+.+|+.++++ +|++++|.|+.++++.... ..+...++....|..++...
T Consensus 204 ~~~~~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~~-~~~~~~l~~~l~P~~s~~~~ 282 (480)
T COG2244 204 ILRFSLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLL-LIVASALNRVLFPALSRAYA 282 (480)
T ss_pred ccCchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 333357899999999999999999999999999999999 8999999999999998885 88999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCch
Q 013168 106 AQQYQRIGTQTYTAIFCLFLVCFPLSFL-WIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLI 184 (448)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~ 184 (448)
++|+++.++..+++..+...++++..+. ..+++++..++.+++ +..+...+++++++.++..+.......+++.|+.
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~--~~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~ 360 (480)
T COG2244 283 EGDRKALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEK--YASAAPILQLLALAGLFLSLVSLTSSLLQALGKQ 360 (480)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 9999999999999999999999999885 888999998876555 2347888999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhhhhhhHhhcccCCCcchhHHHHHHH
Q 013168 185 IPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGIS 223 (448)
Q Consensus 185 ~~~~~~~~~~~~~~i~~~~~li~~~~~G~~Gaa~a~~i~ 223 (448)
+.....+.++.++|++++++++ +.+|..|++.++ .+
T Consensus 361 ~~~~~~~~~~~i~~~~l~~~li--~~~g~~g~~~a~-~~ 396 (480)
T COG2244 361 RLLLLISLISALLNLILNLLLI--PRFGLIGAAIAT-AS 396 (480)
T ss_pred hhhHHHHHHHHHHHHHHHhHHH--HhhhhhhHHHHH-HH
Confidence 9999999999999999999999 558999999999 44
No 30
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=99.59 E-value=5.1e-12 Score=117.24 Aligned_cols=270 Identities=13% Similarity=0.170 Sum_probs=196.8
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhhc-CChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccccchHHHHHH
Q 013168 39 GYIAAPMVAVTLSQYLLQVVSMMMVGH-LGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTY 117 (448)
Q Consensus 39 l~~~~P~~~~~~~~~~~~~id~~~v~~-~g~~~~aa~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~ 117 (448)
+|.+.-...+++...+.+++-..++.| +|+++.|.++....+.++.......|++.+.....++...+ .++.+....
T Consensus 2 ~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~ 79 (273)
T PF01943_consen 2 LKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFS 79 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHH
Confidence 466677788888899999999999998 89999999999999999874555888999888888876433 334444444
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHhCCChhHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Q 013168 118 TAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPAL-FAYATMQPLIRYFQSQSLIIPMFLSSCAALC 196 (448)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 196 (448)
.......+.+++....... ...++.++ .. .. ..+..... ++.........++++.++.+.....++...+
T Consensus 80 ~~~~~~~~~~~i~~~~~~~----~~~~~~~~-~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (273)
T PF01943_consen 80 SVLFLLLIFSLIFLLILLI----ASFFGNPS-LS---LI-LIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSL 150 (273)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHcCCch-HH---HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444333333333332222 12333332 11 11 22222222 5778888889999999999999999999988
Q ss_pred hhhhhhhHhhcccCCCcchhHHHHHHHHHHHHHHHHHHHhcccccccccCCCChHhHhcHHHHHHHHhHHHHHHHHHHHH
Q 013168 197 LHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLEWWS 276 (448)
Q Consensus 197 ~~i~~~~~li~~~~~G~~Gaa~a~~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 276 (448)
..++....+... +.+..+..++..++..+..++..++.+++.+ .+....+++..|++++.+.|..++.......
T Consensus 151 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (273)
T PF01943_consen 151 LSLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRRKLR-----PRFSFFSKKFFKEILRFGLPLFLSSLLSWLY 224 (273)
T ss_pred HHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----ccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888776666654 2348889999999999988888777765442 1222223567889999999999999999999
Q ss_pred HHHHHHHhccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcc
Q 013168 277 FELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVRRVFGYVF 326 (448)
Q Consensus 277 ~~~~~~~~~~~g~~~~~~aa~~i~~~i~~~~~~~~~~~~~a~~~~i~~lf 326 (448)
...+..+++.+.+. .+++.|+++.++......++.++.+++-|.+.+++
T Consensus 225 ~~~d~~ii~~~~g~-~~vg~Y~~a~~l~~~~~~~~~~~~~~~~P~~s~l~ 273 (273)
T PF01943_consen 225 SQIDRLIIGYFLGP-EAVGIYSVAYRLASAISFLLSSISTVLFPRLSRLW 273 (273)
T ss_pred HHhHHHHHHHhCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999888877664 46789999999999999999999888777777654
No 31
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.43 E-value=6e-12 Score=121.11 Aligned_cols=133 Identities=20% Similarity=0.310 Sum_probs=123.4
Q ss_pred cchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccc
Q 013168 28 WGVLSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQ 107 (448)
Q Consensus 28 ~~~~~~~~k~il~~~~P~~~~~~~~~~~~~id~~~v~~~g~~~~aa~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~ 107 (448)
++..++.+|++++++.|.+++++...+...+|+.+++++|++++++|+++.++.++. ..+..+++.+..|.+++++|++
T Consensus 208 ~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~~~i~~~~g~~~v~~~~~a~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~ 286 (342)
T TIGR00797 208 LKPDWEVLKRLLKLGLPIAFRVILESLSFALLALLVARLGSIALAAHQIALNVESLL-FMPAFGFGIAVSILVGQALGAG 286 (342)
T ss_pred cCCCHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCC
Confidence 344578899999999999999999999999999999999999999999999999986 8899999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCChhHHHHHHHHHHHH
Q 013168 108 QYQRIGTQTYTAIFCLFLVCFPLSFL-WIYAGKLLVLIGQDPQISHEVGKFMIWL 161 (448)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~ 161 (448)
|+|++++..+++..+.+++++++.++ ..+++++.+++.+|+++.+.+..++++.
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 341 (342)
T TIGR00797 287 DPKRAKEVARVALKLSLLLGLVLAIILILFREFIARLFTNDPEVLELAAIYLIFV 341 (342)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999998875 8889999999999999999998888764
No 32
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=99.35 E-value=3.6e-09 Score=96.96 Aligned_cols=245 Identities=18% Similarity=0.216 Sum_probs=167.5
Q ss_pred HHHHHHHHhhc-CChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHH
Q 013168 55 LQVVSMMMVGH-LGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFL 133 (448)
Q Consensus 55 ~~~id~~~v~~-~g~~~~aa~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (448)
.+++-..++.| +|+++.|.++....+..+.......|+...... . .++|+++.++..........+.++++.++
T Consensus 3 ~~f~~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (251)
T PF13440_consen 3 INFLFLILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLVR----S-AARDKQDIRSLLRFSLLVSLLLAVILAIL 77 (251)
T ss_pred HHHHHHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----h-hccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677888 899999999999999987633335555554433 2 23455556666666555444444433332
Q ss_pred HHhHHHHHHHhCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhhhhhhHhhcccCCCc
Q 013168 134 WIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGN 213 (448)
Q Consensus 134 ~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~G~ 213 (448)
...+..+++ +++ ...++.+..+..++..+.....+.+++.++.+......+...+....+...+.+. +.+.
T Consensus 78 ---~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 148 (251)
T PF13440_consen 78 ---AILIAYFFG-DPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLYL-GLNL 148 (251)
T ss_pred ---HHHHHHHhC-Chh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHH-HhhH
Confidence 122222333 332 2345667778888889999999999999999999988888888885554444442 2378
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhcccccccccCCCChHhHhcHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcc-CCChhh
Q 013168 214 LGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGL-LPNPQL 292 (448)
Q Consensus 214 ~Gaa~a~~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~g~~~~ 292 (448)
.+..++..++.++..++.....+++. +... +.+.. +.++.+.|..+..........++..+++. +|. .
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~--~ 217 (251)
T PF13440_consen 149 WSILLAFIISALLALLISFYLLRRKL---RLSF-----KFSWR-RLLKYGLPFSLSSLLSWLLSQIDRLLIGYFLGP--E 217 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccc---CCCc-----hhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH--H
Confidence 88888888888887777655333211 1111 12222 47899999999999999999999988888 654 3
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHhhHhhh
Q 013168 293 ETSVLSVCLNTIQTLY-AIPYGLGAAVRRVFGY 324 (448)
Q Consensus 293 ~~aa~~i~~~i~~~~~-~~~~~~~~a~~~~i~~ 324 (448)
+++.|+++.++..... .+..++++.+.|.+++
T Consensus 218 ~~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar 250 (251)
T PF13440_consen 218 AVGIYSVAQRLASLPASLLSSAISSVFFPKLAR 250 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5688999999999887 8888888876666554
No 33
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.16 E-value=7.7e-11 Score=100.41 Aligned_cols=121 Identities=23% Similarity=0.420 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------
Q 013168 265 PSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAA--------------------------- 317 (448)
Q Consensus 265 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~aa~~i~~~i~~~~~~~~~~~~~a--------------------------- 317 (448)
|..+++..+.+.+.+++.+++++|++ ++++++++.++.++..++..+++++
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~--~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~ 78 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPE--ALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLL 78 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTC--CCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHH--HHHHHHHHHHHHHHHhhhcccccccccceeeccccccccccccccccccccc
Confidence 78899999999999999999999864 5689999999999999999999988
Q ss_pred --------------HhhHhhhccCCchHHHHHHHHHHHHHHHHHHHhhHHhhHhHHhhccCcchhhHHHHHHHHHHHhHH
Q 013168 318 --------------VRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIP 383 (448)
Q Consensus 318 --------------~~~~i~~lf~~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 383 (448)
+++++.++|++|+++.+.+.+++++..++.++.++..+..++++|.||++.+++.++++.|++.+|
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 158 (162)
T PF01554_consen 79 SLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIP 158 (162)
T ss_dssp HHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHH
T ss_pred chhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHh
Confidence 799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 013168 384 TAAI 387 (448)
Q Consensus 384 ~~~~ 387 (448)
++|+
T Consensus 159 l~yl 162 (162)
T PF01554_consen 159 LAYL 162 (162)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9874
No 34
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=98.98 E-value=2.3e-09 Score=106.12 Aligned_cols=208 Identities=13% Similarity=0.089 Sum_probs=182.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcCCh--hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccccc
Q 013168 32 SGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQ--LALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQY 109 (448)
Q Consensus 32 ~~~~k~il~~~~P~~~~~~~~~~~~~id~~~v~~~g~--~~~aa~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~ 109 (448)
.+.++++++++.|..+...++.-...+-....|.+++ .++++.++...+.... +....+++.+....++..+|+++.
T Consensus 243 ~~~~~~~~~lai~s~~miclE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~-~~~~~~~~~a~strv~neLGag~p 321 (473)
T KOG1347|consen 243 FDSWGPFFALAIPSAVMICLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWH-LMIPGAFSAAVSTRVSNELGAGKP 321 (473)
T ss_pred hhhHHHHHHHhhcchheeHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH-HHHhhhhhhhHHHHHHHHHcCCCh
Confidence 7889999999999999999999999999999999874 6899999999999986 888999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCchhHHH
Q 013168 110 QRIGTQTYTAIFCLFLVCFPLSFL-WIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMF 188 (448)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 188 (448)
++++.....+...++..++..+.. +.+.+.+...+..++|+.+.+.+..+++++..+......+..+..+|.+..+...
T Consensus 322 ~~ar~~~~v~~~~~~~~g~~~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~ga 401 (473)
T KOG1347|consen 322 KRARVSAKVALQTSVAIGASLGTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIGA 401 (473)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeeccccceE
Confidence 999999999999999998888875 7777788888999999999999999999999999999999999999999888888
Q ss_pred HHHHHHH-HhhhhhhhHhhcccCCCcchhHHHHHHHHHHHHHHHHHHHhcccc
Q 013168 189 LSSCAAL-CLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTA 240 (448)
Q Consensus 189 ~~~~~~~-~~~i~~~~~li~~~~~G~~Gaa~a~~i~~~~~~i~~~~~~~~~~~ 240 (448)
+.++... ++.++....+.+..++|..|.|.+...+..+..........+..|
T Consensus 402 ~vnl~~yyl~G~p~g~~l~~~~~~g~~glw~G~~~~~~~~~~~l~~~~~~tdW 454 (473)
T KOG1347|consen 402 VINLVAYYLVGAPVGLYLGFFTKFGVKGLWIGILLGFSVQTLVLAIVTARTDW 454 (473)
T ss_pred EEeeeeeeEecCcceeEEEEEEecCceEEEeehHHHHHHHHHHHHHheeeccH
Confidence 7666554 666677777777788999999999999977777776655554443
No 35
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=98.72 E-value=3.5e-05 Score=70.06 Aligned_cols=251 Identities=13% Similarity=-0.009 Sum_probs=155.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcCC--h-hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccccc
Q 013168 33 GEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLG--Q-LALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQY 109 (448)
Q Consensus 33 ~~~k~il~~~~P~~~~~~~~~~~~~id~~~v~~~g--~-~~~aa~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~ 109 (448)
...+++.++-.|+.++.....+...+-+.-+++-. + +.+|+|+++..+.-++ -.+...+-+....++ .+++
T Consensus 8 ~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~-~sp~~~~~~igl~~V-----~s~r 81 (345)
T PF07260_consen 8 TSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFF-ASPLSMFHHIGLVFV-----NSKR 81 (345)
T ss_pred chHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH-hChhhhhHHHHHHHh-----cchh
Confidence 46778899999999999998888877777776632 2 4599999999999876 777777766555544 3333
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH--HHhHHHHH-HHhCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCchhH
Q 013168 110 QRIGTQTYTAIFCLFLVCFPLSFL--WIYAGKLL-VLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIP 186 (448)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~-~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~ 186 (448)
++.+ ........+.+...+..++ -.+...++ .+++.++++.+.+...+.++.+-..+.++.....+++--.++...
T Consensus 82 srr~-~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~i 160 (345)
T PF07260_consen 82 SRRK-AVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSWI 160 (345)
T ss_pred hhHH-HHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccceeE
Confidence 3222 2222222222222222222 22344444 556889999999999999999999999999999998876566666
Q ss_pred HHHHHHHHHHhhhhhhhHhhcccCCCcchhH---HHHHHHHHHHHH-HHHHHHhcccccccccCCCChHhHhcHHHHHHH
Q 013168 187 MFLSSCAALCLHIPICWSLVYKSGLGNLGGA---LAIGISNWLNVT-FLAIYMKFSTACAESRVPISMELFQGIGEFFHF 262 (448)
Q Consensus 187 ~~~~~~~~~~~~i~~~~~li~~~~~G~~Gaa---~a~~i~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (448)
....++...+..+++..+++....-....+. ++...+..+.+- +.+-|+..-.+..+...+..+.+...+++++++
T Consensus 161 V~~aSI~~v~~qvV~v~~ll~~~l~~~~pllipil~~y~g~~vr~t~v~LGy~~~i~~~~p~~~~~~~~~~~tl~~~l~F 240 (345)
T PF07260_consen 161 VGSASIADVIAQVVLVAILLSMHLEPQDPLLIPILALYAGIAVRFTIVCLGYYQSIHDIIPQLSGLEKGDSATLQRMLKF 240 (345)
T ss_pred eehHHHHHHHHHHHHHHHHHccccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcccCCChhHHHHHHH
Confidence 6666666666666655555543111112222 222222222111 112222111111122222233344678899999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhcc-CCCh
Q 013168 263 AIPSAVMICLEWWSFELLILMSGL-LPNP 290 (448)
Q Consensus 263 ~~p~~~~~~~~~~~~~~~~~~~~~-~g~~ 290 (448)
.+|.+........+-.+.+.++++ +++.
T Consensus 241 ~~PL~~~~~tq~~SrplVnl~vsR~l~gs 269 (345)
T PF07260_consen 241 WWPLALVLATQRISRPLVNLFVSRDLSGS 269 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCc
Confidence 999999888888888888888887 5553
No 36
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.51 E-value=1.5e-05 Score=80.39 Aligned_cols=204 Identities=11% Similarity=0.024 Sum_probs=162.2
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhc--C-ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccccc-
Q 013168 34 EVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGH--L-GQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQY- 109 (448)
Q Consensus 34 ~~k~il~~~~P~~~~~~~~~~~~~id~~~v~~--~-g~~~~aa~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~- 109 (448)
.-++++++......+++.-.+.+--|.+++.. + ..++.|.|+++++.-++.+-.+...+-...-...+|...+++.
T Consensus 251 fd~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~ 330 (549)
T PF04506_consen 251 FDRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSK 330 (549)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCch
Confidence 34678888999999999999999999999988 4 6789999999999999888889999999999999998875533
Q ss_pred --------chHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q 013168 110 --------QRIGTQTYTAIFCLFLVCFPLSFL-WIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQS 180 (448)
Q Consensus 110 --------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~ 180 (448)
++..+.....+.+...+++++..+ ...++.++.+++++.=....+...+++++...|+.+++....++.++
T Consensus 331 ~~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s 410 (549)
T PF04506_consen 331 KKQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFS 410 (549)
T ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 235556666667777777776665 77777788887654322334577899999999999999999999886
Q ss_pred cCc---hhHHHHHHHHHHHhhhhhhhHhhcccCCCcchhHHHHHHHHHHHHHHHHHHHhcc
Q 013168 181 QSL---IIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFS 238 (448)
Q Consensus 181 ~~~---~~~~~~~~~~~~~~~i~~~~~li~~~~~G~~Gaa~a~~i~~~~~~i~~~~~~~~~ 238 (448)
... -+......+...++.+..+++++.. ++|..|..+|.++...+..+...++.++.
T Consensus 411 ~a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~~ 470 (549)
T PF04506_consen 411 VASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRRY 470 (549)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 2333444566677888889999976 79999999999999999999998888654
No 37
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.45 E-value=1.3e-05 Score=66.66 Aligned_cols=80 Identities=20% Similarity=0.230 Sum_probs=74.1
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhhhhhhHhhcccCCCcchhHHHHHHHHHHHHHHHHHHHhc
Q 013168 158 MIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKF 237 (448)
Q Consensus 158 l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~G~~Gaa~a~~i~~~~~~i~~~~~~~~ 237 (448)
+++++++.++..+.....+.+++.|+++.....++.+.++|++++++++ +++|..|+++|+.+++....++..++.+|
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li--~~~G~~Gaa~a~~i~~~~~~~~~~~~~~k 79 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILI--PRFGIYGAAIATAISEIVSFILNLWYVRK 79 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999999999999999999999999999999998 55999999999999999999998888865
Q ss_pred cc
Q 013168 238 ST 239 (448)
Q Consensus 238 ~~ 239 (448)
+-
T Consensus 80 ~~ 81 (146)
T PF14667_consen 80 KI 81 (146)
T ss_pred Hh
Confidence 53
No 38
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.18 E-value=0.0025 Score=64.55 Aligned_cols=163 Identities=9% Similarity=0.011 Sum_probs=113.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHhcc--CCChhhHHHHHHHHHHHHHHHH----HHHHH-----HH----------
Q 013168 257 GEFFHFAIPSAVMICLEWWSFELLILMSGL--LPNPQLETSVLSVCLNTIQTLY----AIPYG-----LG---------- 315 (448)
Q Consensus 257 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~aa~~i~~~i~~~~~----~~~~~-----~~---------- 315 (448)
++.++.......+++.-.+...-+.+++.. +.+. .+.+.|++++|+-+++. .|..= ++
T Consensus 253 ~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~-~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~~ 331 (549)
T PF04506_consen 253 RDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTF-EDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSKK 331 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCH-HHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCchh
Confidence 688888889888888888888888877776 4443 23477888888777652 12100 00
Q ss_pred --------HH------------------------HhhHhhhccCCchHHHHHHHHHHHHHHHHHHHhhHHhhHhHHhhcc
Q 013168 316 --------AA------------------------VRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGC 363 (448)
Q Consensus 316 --------~a------------------------~~~~i~~lf~~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~ 363 (448)
.+ ..+.+.+++..+.-........++++++..|+.+++++..+..++.
T Consensus 332 ~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~ 411 (549)
T PF04506_consen 332 KQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSV 411 (549)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 11 3445555543211111125789999999999999999999999999
Q ss_pred CcchhhHHHHHHH--HHHHhHHHHHHHHHhcCCCchhHhHHHHHHHHHHHHHHHHHHHcC
Q 013168 364 GWQNIAAFVNLGA--FYLCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTCT 421 (448)
Q Consensus 364 g~~~~~~~~~~~~--~~~~~i~~~~~l~~~~~~g~~gi~~a~~~~~~~~~~~~~~~~~~~ 421 (448)
.+++.....+-.- .-++.+..++.+..+ ++|..|+-+|..+.+.++.+....+.++.
T Consensus 412 a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~~ 470 (549)
T PF04506_consen 412 ASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRRY 470 (549)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887665554322 223344566777765 78999999999999999988887777663
No 39
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.05 E-value=0.0002 Score=68.16 Aligned_cols=203 Identities=9% Similarity=0.008 Sum_probs=146.5
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHhhc---CChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccccch
Q 013168 35 VKKQGYIAAPMVAVTLSQYLLQVVSMMMVGH---LGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQR 111 (448)
Q Consensus 35 ~k~il~~~~P~~~~~~~~~~~~~id~~~v~~---~g~~~~aa~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~ 111 (448)
-++..+......-+.+.-.+.+=-|.+++.. .+-.+-|.|.++++.-++.+-.+...+--..-...+|...+++.|+
T Consensus 238 d~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~ 317 (530)
T KOG2864|consen 238 DNDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQEN 317 (530)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhh
Confidence 3455556666667777888888888888874 4556778888888877777777888888888999999998887777
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHH-HHhHHHHHHHhCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCchh--
Q 013168 112 IGTQTYTA---IFCLFLVCFPLSFL-WIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLII-- 185 (448)
Q Consensus 112 ~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~-- 185 (448)
.++..... +.....++++.... ...++.++.+++++.=....+...+++++...|+.+++.+..++..+....+
T Consensus 318 ~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi 397 (530)
T KOG2864|consen 318 VKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQI 397 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHH
Confidence 76665544 44444455444443 5556677777766543334455779999999999999999999887633222
Q ss_pred -HHHHHHHHHHHhhhhhhhHhhcccCCCcchhHHHHHHHHHHHHHHHHHHHhccc
Q 013168 186 -PMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFST 239 (448)
Q Consensus 186 -~~~~~~~~~~~~~i~~~~~li~~~~~G~~Gaa~a~~i~~~~~~i~~~~~~~~~~ 239 (448)
-.-...++..++.++.+++++.+ +|..|..+|.++...+..+....+.++..
T Consensus 398 ~~~n~~mlafSviflilsylL~~~--~~~~GlIlANiiNm~lRIlys~~fI~~~y 450 (530)
T KOG2864|consen 398 DKHNKFMLAFSVIFLILSYLLIRW--FGLVGLILANIINMSLRILYSLRFIRHYY 450 (530)
T ss_pred HhcccchhHHHHHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11233456677888889999977 78899999999999888888776665443
No 40
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=97.42 E-value=0.0011 Score=61.01 Aligned_cols=72 Identities=19% Similarity=0.238 Sum_probs=68.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhc-CChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 013168 32 SGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGH-LGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAY 104 (448)
Q Consensus 32 ~~~~k~il~~~~P~~~~~~~~~~~~~id~~~v~~-~g~~~~aa~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~ 104 (448)
++..|++++.+.|..++++...+....|+.++++ .|++++|.|+.+.++.... ..+...+.+...|.++|.+
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ii~~~~g~~~vg~Y~~a~~l~~~~-~~~~~~~~~~~~P~~s~l~ 273 (273)
T PF01943_consen 201 KKFFKEILRFGLPLFLSSLLSWLYSQIDRLIIGYFLGPEAVGIYSVAYRLASAI-SFLLSSISTVLFPRLSRLW 273 (273)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhC
Confidence 7899999999999999999999999999999999 7999999999999999986 8899999999999999863
No 41
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=97.42 E-value=0.0013 Score=54.63 Aligned_cols=79 Identities=15% Similarity=0.116 Sum_probs=70.1
Q ss_pred HHHHHHHHHHhhHHhhHhHHhhccCcchhhHHHHHHHHHHHhHHHHHHHHHhcCCCchhHhHHHHHHHHHHHHHHHHHHH
Q 013168 340 APLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITT 419 (448)
Q Consensus 340 l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~gi~~a~~~~~~~~~~~~~~~~~ 419 (448)
+.+.+++.++.++......++++.||++..++.++++ .++.+++.+.+. +++|..|..++..+++.+...+..+..+
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~-~~v~i~~~~~li--~~~G~~Gaa~a~~i~~~~~~~~~~~~~~ 78 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIG-AIVNIILNYILI--PRFGIYGAAIATAISEIVSFILNLWYVR 78 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHH-HHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999999999999999988 666677777774 5679999999999999999999888888
Q ss_pred cC
Q 013168 420 CT 421 (448)
Q Consensus 420 ~~ 421 (448)
|.
T Consensus 79 k~ 80 (146)
T PF14667_consen 79 KK 80 (146)
T ss_pred HH
Confidence 83
No 42
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.82 E-value=0.53 Score=45.60 Aligned_cols=101 Identities=13% Similarity=0.034 Sum_probs=68.1
Q ss_pred HhhHhhhccCCchHHHHHHHHHHHHHHHHHHHhhHHhhHhHHhhccCcchhhHHHH---HHHHHHHhHHHHHHHHHhcCC
Q 013168 318 VRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVN---LGAFYLCGIPTAAILGFWLKF 394 (448)
Q Consensus 318 ~~~~i~~lf~~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~---~~~~~~~~i~~~~~l~~~~~~ 394 (448)
..+.+..++....-...-....+++++...++.+++++..+...+.++.+....-+ ++. -++.+...+++.-++
T Consensus 346 YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi~~~n~~mlaf-SviflilsylL~~~~-- 422 (530)
T KOG2864|consen 346 YSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQIDKHNKFMLAF-SVIFLILSYLLIRWF-- 422 (530)
T ss_pred ccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHHHhcccchhHH-HHHHHHHHHHHHHHh--
Confidence 55666666542111111255889999999999999999999999988766554332 111 123345778887666
Q ss_pred CchhHhHHHHHHHHHHHHHHHHHHHcC
Q 013168 395 RGRGLWIGIQAGAFTQTLLLGIITTCT 421 (448)
Q Consensus 395 g~~gi~~a~~~~~~~~~~~~~~~~~~~ 421 (448)
|..|.-+|..+.+.++-+....+.++.
T Consensus 423 ~~~GlIlANiiNm~lRIlys~~fI~~~ 449 (530)
T KOG2864|consen 423 GLVGLILANIINMSLRILYSLRFIRHY 449 (530)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678988888888888877665555553
No 43
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=96.71 E-value=0.23 Score=45.86 Aligned_cols=153 Identities=12% Similarity=0.027 Sum_probs=104.2
Q ss_pred hcHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccC-CChhhHHHHHHHHHHHHHHHHHHHHHHHHH---------------
Q 013168 254 QGIGEFFHFAIPSAVMICLEWWSFELLILMSGLL-PNPQLETSVLSVCLNTIQTLYAIPYGLGAA--------------- 317 (448)
Q Consensus 254 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~aa~~i~~~i~~~~~~~~~~~~~a--------------- 317 (448)
....++++.-.|.+++.....+.-.+.+.-+++- -++...+|+|+++..+.-++..+...+-+.
T Consensus 8 ~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~igl~~V~s~rsrr~~v 87 (345)
T PF07260_consen 8 TSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIGLVFVNSKRSRRKAV 87 (345)
T ss_pred chHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHhcchhhhHHHH
Confidence 3456899999999999988888888888877764 343345899999999887776555444333
Q ss_pred ---------------------Hhh-HhhhccCCchHHHHHHHHHHHHHHHHHHHhhHHhhHhHHhhccCcchhhHHHHHH
Q 013168 318 ---------------------VRR-VFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLG 375 (448)
Q Consensus 318 ---------------------~~~-~i~~lf~~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 375 (448)
+.+ .+-+++.-||++.+.+...+.++....++++......|++-=..++......++.
T Consensus 88 l~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~iV~~aSI~ 167 (345)
T PF07260_consen 88 LCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSWIVGSASIA 167 (345)
T ss_pred HHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccceeEeehHHHH
Confidence 222 2334566789999999999999999999999999999988755666666555655
Q ss_pred HHHHHhHHHHHHHHHhcCCCchhHhHHHHHHH
Q 013168 376 AFYLCGIPTAAILGFWLKFRGRGLWIGIQAGA 407 (448)
Q Consensus 376 ~~~~~~i~~~~~l~~~~~~g~~gi~~a~~~~~ 407 (448)
. .+..+.+...+.....-....+++......
T Consensus 168 ~-v~~qvV~v~~ll~~~l~~~~pllipil~~y 198 (345)
T PF07260_consen 168 D-VIAQVVLVAILLSMHLEPQDPLLIPILALY 198 (345)
T ss_pred H-HHHHHHHHHHHHccccCccccHHHHHHHHH
Confidence 4 223332233333222223455666554433
No 44
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=96.42 E-value=0.026 Score=51.27 Aligned_cols=67 Identities=19% Similarity=0.231 Sum_probs=61.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhhc-CChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Q 013168 37 KQGYIAAPMVAVTLSQYLLQVVSMMMVGH-LGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQA 103 (448)
Q Consensus 37 ~il~~~~P~~~~~~~~~~~~~id~~~v~~-~g~~~~aa~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~ 103 (448)
+.++.+.|..++++........|.++++. +|++++|.|+.+.++...+...+..++++...|..+|+
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~~~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar~ 251 (251)
T PF13440_consen 184 RLLKYGLPFSLSSLLSWLLSQIDRLLIGYFLGPEAVGIYSVAQRLASLPASLLSSAISSVFFPKLARM 251 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 47999999999999999999999999999 99999999999999999762389999999999998873
No 45
>COG4267 Predicted membrane protein [Function unknown]
Probab=91.43 E-value=14 Score=35.40 Aligned_cols=138 Identities=11% Similarity=0.110 Sum_probs=84.5
Q ss_pred HHHHHHHHHhHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCChhHHHHHHHHHHHHHhhH
Q 013168 86 FSVLLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPAL 165 (448)
Q Consensus 86 ~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~ 165 (448)
..+..|+....+..+|...=++|.+++...+.-...+....+..+..+ +-...++...... .......
T Consensus 74 ~IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~-------vf~~~~~~si~yk-----~l~~~~F 141 (467)
T COG4267 74 QIITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLI-------VFFVNNQYSIVYK-----ILACALF 141 (467)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH-------hhhhcCchhHHHH-----HHHHHHH
Confidence 445667777777777777777777777766655555544444443321 1111222222111 1112222
Q ss_pred HHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhhhhhhHhhcccCCCcchhHHHHHHHHHHHHHHHHHHHhcc
Q 013168 166 FAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFS 238 (448)
Q Consensus 166 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~G~~Gaa~a~~i~~~~~~i~~~~~~~~~ 238 (448)
..+...=....++.+.++.+.....-.++.++.+.+..++-. .+..|.-++..++..+...+...+..|.
T Consensus 142 V~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~~---~~ie~lLL~~~IGi~~i~~l~~~~Ilr~ 211 (467)
T COG4267 142 VGMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLFLK---SPIEGLLLTLDIGIFIILFLLNFYILRY 211 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 233333334445667788888888888888888877766654 4899999999999998888877776554
No 46
>PF14184 YrvL: Regulatory protein YrvL
Probab=74.28 E-value=45 Score=26.96 Aligned_cols=99 Identities=12% Similarity=0.163 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHhCCCh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Q 013168 118 TAIFCLFLVCFPLSFLWIYAGKLLVLIGQDP-QISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALC 196 (448)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 196 (448)
......+...++.+...+....+++++|-+= .......-.+.....+.|+..+...+...+.-.+..+.... .....
T Consensus 6 ~~i~~~l~~~~v~a~~ff~~~gif~L~Gi~Y~S~~~llLF~li~~~lg~~~e~~~k~l~~~l~~~~~~~~~~~--~l~~~ 83 (132)
T PF14184_consen 6 IFIIIALLLIIVFAIYFFVMVGIFHLLGIEYESVGSLLLFFLIIFVLGLPFELFEKVLLKALLFLRMSRRLFI--LLAFI 83 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHH--HHHHH
Confidence 3344444444444455666777888888652 22333334455557788888888877776665544444443 56667
Q ss_pred hhhhhhhHhhcccCCCcchhHH
Q 013168 197 LHIPICWSLVYKSGLGNLGGAL 218 (448)
Q Consensus 197 ~~i~~~~~li~~~~~G~~Gaa~ 218 (448)
+....++..++.-+.=+.+..+
T Consensus 84 id~~~t~~~i~~aD~~m~sI~i 105 (132)
T PF14184_consen 84 IDFLFTWITIYTADELMESISI 105 (132)
T ss_pred HHHHHHHHHHHHHHHHhcceee
Confidence 7777777777653332444333
No 47
>COG4267 Predicted membrane protein [Function unknown]
Probab=71.32 E-value=1e+02 Score=29.79 Aligned_cols=107 Identities=13% Similarity=0.038 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCchhHHHHHH
Q 013168 113 GTQTYTAIFCLFLVCFPLSFL-WIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSS 191 (448)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 191 (448)
....++.+.-..-+-...++. .+.++.++.+++-++.. .+.+++-.++.-+.......-.+.--.++.+.....+
T Consensus 323 iltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~lS~~~----l~lF~vd~lg~s~~i~f~~ll~i~lyfd~r~i~l~~t 398 (467)
T COG4267 323 ILTLRQGILEIMELQMLASLLCFLLADALLLWFGLSEYY----LDLFYVDVLGVSCQIVFMSLLNIFLYFDYRRIALELT 398 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 333444443333333344443 77789999999866522 2334444444444444444333333467777777777
Q ss_pred HHHHHhhhhhhhHhhcc-cCCCcchhHHHHHHH
Q 013168 192 CAALCLHIPICWSLVYK-SGLGNLGGALAIGIS 223 (448)
Q Consensus 192 ~~~~~~~i~~~~~li~~-~~~G~~Gaa~a~~i~ 223 (448)
..-.+.|.++++++... |++--.|..+|..+.
T Consensus 399 ~~fli~N~ilT~i~l~lgp~~~g~gff~a~fl~ 431 (467)
T COG4267 399 ALFLISNGILTFIFLELGPGYYGVGFFLASFLY 431 (467)
T ss_pred hHHHHHhHHHHHHHHHhCccceehHHHHHHHHH
Confidence 88888898888877752 333333444444333
No 48
>PTZ00370 STEVOR; Provisional
Probab=41.43 E-value=43 Score=30.68 Aligned_cols=35 Identities=14% Similarity=0.109 Sum_probs=18.7
Q ss_pred CchhHhHHHHHHHHHHHHHHHHHH-HcC--CHHHHHHH
Q 013168 395 RGRGLWIGIQAGAFTQTLLLGIIT-TCT--NWEKQASK 429 (448)
Q Consensus 395 g~~gi~~a~~~~~~~~~~~~~~~~-~~~--~w~~~~~~ 429 (448)
...|+..-..+-..+..+++++++ +|+ .||+...|
T Consensus 255 ~Pygiaalvllil~vvliilYiwlyrrRK~swkhe~kk 292 (296)
T PTZ00370 255 YPYGIAALVLLILAVVLIILYIWLYRRRKNSWKHECKK 292 (296)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHh
Confidence 455655544444444444444444 443 49887665
No 49
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=35.84 E-value=86 Score=22.83 Aligned_cols=27 Identities=15% Similarity=0.111 Sum_probs=8.6
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCC
Q 013168 416 IITTCTNWEKQASKARERISKGRSLAD 442 (448)
Q Consensus 416 ~~~~~~~w~~~~~~~~~~~~~~~~~~~ 442 (448)
..++|.+.++++++..+|++.-.+.+.
T Consensus 28 ieYrk~~rqrkId~li~RIreraEDSG 54 (81)
T PF00558_consen 28 IEYRKIKRQRKIDRLIERIRERAEDSG 54 (81)
T ss_dssp -----------CHHHHHHHHCTTTCCH
T ss_pred HHHHHHHHHHhHHHHHHHHHcccccCC
Confidence 344555666666666666654433333
No 50
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=33.76 E-value=53 Score=22.68 Aligned_cols=9 Identities=44% Similarity=0.412 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 013168 406 GAFTQTLLL 414 (448)
Q Consensus 406 ~~~~~~~~~ 414 (448)
+.++..++.
T Consensus 31 G~llg~l~~ 39 (68)
T PF06305_consen 31 GALLGWLLS 39 (68)
T ss_pred HHHHHHHHH
Confidence 333333333
No 51
>PRK01637 hypothetical protein; Reviewed
Probab=33.43 E-value=3.9e+02 Score=24.71 Aligned_cols=11 Identities=9% Similarity=0.048 Sum_probs=5.1
Q ss_pred hcCCCCCCCcc
Q 013168 435 SKGRSLADNRV 445 (448)
Q Consensus 435 ~~~~~~~~~~~ 445 (448)
..|++++||++
T Consensus 275 ~~~~~~~~~~~ 285 (286)
T PRK01637 275 AAEQEEDDEPK 285 (286)
T ss_pred ccccccccccC
Confidence 44444445544
No 52
>COG5393 Predicted membrane protein [Function unknown]
Probab=31.81 E-value=2.5e+02 Score=21.98 Aligned_cols=49 Identities=8% Similarity=-0.049 Sum_probs=23.2
Q ss_pred HhcCCCchhHhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 013168 390 FWLKFRGRGLWIGIQAGAFTQTLLLGIITTCTNWEKQASKARERISKGR 438 (448)
Q Consensus 390 ~~~~~g~~gi~~a~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 438 (448)
+.+.+-.......+++-.++..+...|.++|..........+++...++
T Consensus 76 f~~tyRl~a~~a~~~vl~vl~~i~ciW~lrks~~s~l~~aT~~ELanDR 124 (131)
T COG5393 76 FDPTYRLNAMIATTAVLLVLALIGCIWTLRKSRKSTLLRATRHELANDR 124 (131)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHhhhH
Confidence 3333333334444445555566666666666544333333344444333
No 53
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=31.35 E-value=3.8e+02 Score=25.26 Aligned_cols=66 Identities=8% Similarity=0.106 Sum_probs=35.7
Q ss_pred HHHHHHHhccCCChhhHHHHHHHHHHHHH-HHHHHHHHHHHH-----------HhhHhhhcc-C-CchHHHHHHHHHHHH
Q 013168 277 FELLILMSGLLPNPQLETSVLSVCLNTIQ-TLYAIPYGLGAA-----------VRRVFGYVF-S-NEKQVVDYVTTMAPL 342 (448)
Q Consensus 277 ~~~~~~~~~~~g~~~~~~aa~~i~~~i~~-~~~~~~~~~~~a-----------~~~~i~~lf-~-~d~~~~~~~~~~l~i 342 (448)
-.....+.+.+|++ .+.+|+++..-... ++.|+..+.+.. .-|.+..+. . -|++..+...+-...
T Consensus 123 ggLY~aL~~~yGd~-~D~gA~~i~sl~~GPf~tMl~LG~sG~a~ip~~~lv~~llP~iiG~iLGNLD~~~r~fl~~~~~~ 201 (314)
T PF03812_consen 123 GGLYLALMGQYGDE-EDVGAFSILSLNDGPFFTMLALGASGLANIPWMSLVAALLPIIIGMILGNLDPDFRKFLAPGVPI 201 (314)
T ss_pred HHHHHHHHHHhCCH-HHhHHHHHHHhhhhHHHHHHHHhhccccCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCe
Confidence 33444567888985 46688877665443 444554444332 233333333 2 367766666555554
Q ss_pred H
Q 013168 343 V 343 (448)
Q Consensus 343 ~ 343 (448)
.
T Consensus 202 l 202 (314)
T PF03812_consen 202 L 202 (314)
T ss_pred e
Confidence 4
No 54
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=31.00 E-value=1.4e+02 Score=18.83 Aligned_cols=20 Identities=15% Similarity=0.205 Sum_probs=11.4
Q ss_pred HhHHHHHHHHHHHHHHHHHH
Q 013168 399 LWIGIQAGAFTQTLLLGIIT 418 (448)
Q Consensus 399 i~~a~~~~~~~~~~~~~~~~ 418 (448)
+|.++.++.++...+.....
T Consensus 8 VW~sYg~t~l~l~~li~~~~ 27 (45)
T TIGR03141 8 VWLAYGITALVLAGLILWSL 27 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 67777776666544443333
No 55
>PRK03612 spermidine synthase; Provisional
Probab=30.76 E-value=6e+02 Score=26.01 Aligned_cols=50 Identities=18% Similarity=0.150 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHhhhhhhhHhhcccCCCcchhHHHHHHHHHHHHHHHHHHHh
Q 013168 185 IPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMK 236 (448)
Q Consensus 185 ~~~~~~~~~~~~~~i~~~~~li~~~~~G~~Gaa~a~~i~~~~~~i~~~~~~~ 236 (448)
+.....++-+.+--+...++++ +.+|..+..+....-++..+++..+..+
T Consensus 149 ~ly~~ntlGa~~G~l~~~~vLl--p~lG~~~t~~~~a~l~~~~a~~~~~~~~ 198 (521)
T PRK03612 149 TVLAADYLGALVGGLAFPFLLL--PRLGLIRTAALTGSLNLLAALVFLWLFR 198 (521)
T ss_pred hhHhHHhHHHHHHHHHHHHHHH--HhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444544444455555566666 5589888877776666666655554443
No 56
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=30.35 E-value=1.4e+02 Score=28.16 Aligned_cols=25 Identities=20% Similarity=0.117 Sum_probs=14.5
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHcCCH
Q 013168 398 GLWIGIQAGAFTQTLLLGIITTCTNW 423 (448)
Q Consensus 398 gi~~a~~~~~~~~~~~~~~~~~~~~w 423 (448)
|.|++..+ .++.++..+++++|.+|
T Consensus 291 g~~~~l~~-~~~~~~~~~~~f~rk~W 315 (316)
T PRK11085 291 GYPGAIIL-MILAGLAPYLYFKRKNW 315 (316)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHccc
Confidence 44444333 33445556778888888
No 57
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=30.34 E-value=4.3e+02 Score=25.01 Aligned_cols=71 Identities=18% Similarity=0.329 Sum_probs=35.1
Q ss_pred HhhHHhhHhHHhhccCcchhhHHHHHHHHHHHhHHHHHHHH-HhcCCC-------chhHhHHHHHHHHHHHHHHHHHHHc
Q 013168 349 MDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILG-FWLKFR-------GRGLWIGIQAGAFTQTLLLGIITTC 420 (448)
Q Consensus 349 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~-~~~~~g-------~~gi~~a~~~~~~~~~~~~~~~~~~ 420 (448)
...+.....+.. ........-+.++++ .++ +|..++.+ |..+++ .+|.|++..+. ++.+++.+++++|
T Consensus 243 l~~l~d~~~s~i-s~~~N~imk~LTi~s-~if-lPpTlIagiyGMNf~~mPel~~~~Gy~~~l~~m-~~~~~~~~~~frr 318 (322)
T COG0598 243 LSSLLDAYLSLI-NNNQNEIMKILTIVS-TIF-LPPTLITGFYGMNFKGMPELDWPYGYPIALILM-LLLALLLYLYFRR 318 (322)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHH-HHH-HhhHHHHcccccCCCCCcCCCCcccHHHHHHHH-HHHHHHHHHHHHh
Confidence 333333333333 333444445556555 333 45555444 333333 12555555554 4455566678888
Q ss_pred CCH
Q 013168 421 TNW 423 (448)
Q Consensus 421 ~~w 423 (448)
.+|
T Consensus 319 k~W 321 (322)
T COG0598 319 KGW 321 (322)
T ss_pred cCc
Confidence 787
No 58
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=29.79 E-value=79 Score=23.41 Aligned_cols=38 Identities=21% Similarity=0.209 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc--CChhHHHHHHHHHHHH
Q 013168 44 PMVAVTLSQYLLQVVSMMMVGH--LGQLALSSTAMAISLA 81 (448)
Q Consensus 44 P~~~~~~~~~~~~~id~~~v~~--~g~~~~aa~~~~~~i~ 81 (448)
|.++...+.-+..++-.++.+. ..-.+++..+++--+-
T Consensus 35 p~m~~lmllGL~WiVvyYi~~~~i~pi~~lG~WN~~IGfg 74 (87)
T PF06781_consen 35 PLMLGLMLLGLLWIVVYYISGGQIPPIPDLGNWNLAIGFG 74 (87)
T ss_pred HHHHHHHHHHHHHHhhhhcccCCCCCcccccchHHHHHHH
Confidence 6666666666666666666655 4556777666555444
No 59
>PRK08156 type III secretion system protein SpaS; Validated
Probab=28.86 E-value=2.7e+02 Score=26.92 Aligned_cols=30 Identities=7% Similarity=0.033 Sum_probs=16.6
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCCCccc
Q 013168 417 ITTCTNWEKQASKARERISKGRSLADNRVV 446 (448)
Q Consensus 417 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 446 (448)
.+.|..|.++.+..++++..|..+.|.|++
T Consensus 198 ~~Qr~~~~k~lkMSkqEvKdE~Ke~EGdP~ 227 (361)
T PRK08156 198 IAEYFLHMKDMKMDKQEVKREYKEQEGNPE 227 (361)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHhccCCHH
Confidence 334444555655556666666666555543
No 60
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=28.52 E-value=1.6e+02 Score=18.66 Aligned_cols=21 Identities=14% Similarity=0.150 Sum_probs=11.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHH
Q 013168 399 LWIGIQAGAFTQTLLLGIITT 419 (448)
Q Consensus 399 i~~a~~~~~~~~~~~~~~~~~ 419 (448)
+|.++.++.++...+...-..
T Consensus 7 VW~sYg~t~~~l~~l~~~~~~ 27 (46)
T PF04995_consen 7 VWSSYGVTALVLAGLIVWSLR 27 (46)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 667777766665554443333
No 61
>PF08627 CRT-like: CRT-like; InterPro: IPR013936 This region is found in proteins related to Plasmodium falciparum chloroquine resistance transporter (CRT).
Probab=26.24 E-value=2.3e+02 Score=22.57 Aligned_cols=29 Identities=3% Similarity=0.029 Sum_probs=22.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhhcC
Q 013168 38 QGYIAAPMVAVTLSQYLLQVVSMMMVGHL 66 (448)
Q Consensus 38 il~~~~P~~~~~~~~~~~~~id~~~v~~~ 66 (448)
+.+-.+++.+..++..+...+|.+...+.
T Consensus 51 ~~ke~~~L~v~~vv~V~s~v~N~VL~K~~ 79 (130)
T PF08627_consen 51 YSKENFKLLVYVVVYVVSGVINRVLYKKM 79 (130)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567788888888888888888877663
No 62
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=26.07 E-value=4e+02 Score=23.68 Aligned_cols=38 Identities=13% Similarity=0.341 Sum_probs=20.3
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhC
Q 013168 108 QYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIG 145 (448)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 145 (448)
+++.....+..++...+.+.++++++..+..+++.+++
T Consensus 142 ~y~k~~k~~~~gi~aml~Vf~LF~lvmt~g~d~m~fl~ 179 (230)
T PF03904_consen 142 KYQKRQKSMYKGIGAMLFVFMLFALVMTIGSDFMDFLH 179 (230)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccchhhhh
Confidence 44444445555555444444444445656667776665
No 63
>PF05313 Pox_P21: Poxvirus P21 membrane protein; InterPro: IPR007977 The p21 membrane protein of vaccinia virus, encoded by the A17L (or A18L) gene, has been reported to localise on the inner of the two membranes of the intracellular mature virus (IMV). It has also been shown that p21 acts as a membrane anchor for the externally located fusion protein P14 (A27L gene) [].; GO: 0016021 integral to membrane
Probab=24.63 E-value=2.3e+02 Score=24.17 Aligned_cols=26 Identities=23% Similarity=0.123 Sum_probs=17.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhcc
Q 013168 213 NLGGALAIGISNWLNVTFLAIYMKFS 238 (448)
Q Consensus 213 ~~Gaa~a~~i~~~~~~i~~~~~~~~~ 238 (448)
+.|...+..+++.+.+++...|..+.
T Consensus 136 ~s~s~~~~ti~yIiL~iLf~~Ya~nl 161 (189)
T PF05313_consen 136 VSGSSGAYTISYIILAILFCIYAFNL 161 (189)
T ss_pred hhHhHHHHHHHHHHHHHHHHHheeec
Confidence 44666677888888777776666543
No 64
>PF10507 DUF2453: Protein of unknown function (DUF2453); InterPro: IPR019537 The function of these transmembrane protein is not known.
Probab=23.75 E-value=3.6e+02 Score=21.05 Aligned_cols=47 Identities=17% Similarity=0.282 Sum_probs=28.7
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccc
Q 013168 57 VVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQ 108 (448)
Q Consensus 57 ~id~~~v~~~g~~~~aa~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~ 108 (448)
.+|..+=..+|-..+||-++++.+..+. ..+++...-... +..|-++
T Consensus 24 ~Id~~lg~~~giStmAAAalGN~vSDv~----Gi~~~~~vE~~~-~rlg~~~ 70 (111)
T PF10507_consen 24 YIDNTLGVTFGISTMAAAALGNLVSDVA----GIGLGGYVERLA-QRLGLKA 70 (111)
T ss_pred HHHHHHHHHHhHHHHHHHHHhhhhhhhh----hhHHHHHHHHHH-HHhCCCC
Confidence 4666655557888888888888887764 344444444433 4344433
No 65
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=23.40 E-value=64 Score=21.54 Aligned_cols=22 Identities=9% Similarity=0.058 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHcCCHH
Q 013168 403 IQAGAFTQTLLLGIITTCTNWE 424 (448)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~w~ 424 (448)
.+++.++..+..+.+-.+-++.
T Consensus 11 iVlgvIigNia~LK~sAk~K~~ 32 (55)
T PF11446_consen 11 IVLGVIIGNIAALKYSAKMKFP 32 (55)
T ss_pred HHHHHHHhHHHHHHHhcccCCC
Confidence 3344444444444444443443
No 66
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=22.99 E-value=1.3e+02 Score=25.49 Aligned_cols=34 Identities=12% Similarity=-0.023 Sum_probs=24.2
Q ss_pred CchhHhHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Q 013168 395 RGRGLWIGIQAGAFTQTLLLGIITTCTNWEKQAS 428 (448)
Q Consensus 395 g~~gi~~a~~~~~~~~~~~~~~~~~~~~w~~~~~ 428 (448)
|..+.+++..+-.++.++++++.+++.-|++...
T Consensus 12 ~~~~~~~~~~~~~~i~Flil~~lL~~~l~kpi~~ 45 (175)
T PRK14472 12 GLLSPNPGLIFWTAVTFVIVLLILKKIAWGPILS 45 (175)
T ss_pred CccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 5666666666667777778888888877775544
No 67
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=22.96 E-value=7e+02 Score=24.30 Aligned_cols=89 Identities=10% Similarity=0.059 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHhhHhHHhhc--cCcchhhHHHHHHHHHHHhHHHHHHHHHhcCCCchhHhHHHHHHH
Q 013168 330 KQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARG--CGWQNIAAFVNLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGA 407 (448)
Q Consensus 330 ~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~--~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~gi~~a~~~~~ 407 (448)
..+..+..+.+..+..+.+...+-.+....+.. .|+...-..-.+.+.|+-+-.=-.-....++-+-.-...+...++
T Consensus 75 r~i~~~g~~~l~~F~~~~~g~viG~~va~~l~~~~l~~~~wk~ag~l~gsyiGGs~N~~Av~~al~~~~~~~~a~~aaDn 154 (378)
T PF05684_consen 75 RRILRLGGRLLLAFLIGAVGTVIGAVVAFLLFGGFLGPEGWKIAGMLAGSYIGGSVNFVAVAEALGVSDSLFAAALAADN 154 (378)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhcccCchhHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 355566777777777777766666666554444 245544444555555654432111122223333344555666666
Q ss_pred HHHHHHHHHHH
Q 013168 408 FTQTLLLGIIT 418 (448)
Q Consensus 408 ~~~~~~~~~~~ 418 (448)
++..+.+...+
T Consensus 155 v~~~~~~~~l~ 165 (378)
T PF05684_consen 155 VVMALWFAFLL 165 (378)
T ss_pred HHHHHHHHHHH
Confidence 66666554333
No 68
>PF02592 DUF165: Uncharacterized ACR, YhhQ family COG1738; InterPro: IPR003744 This is a family of uncharacterised proteins. Conserved regions of hydrophobicity suggest that all members of the family may be integral membrane proteins.
Probab=22.88 E-value=4.2e+02 Score=21.59 Aligned_cols=56 Identities=11% Similarity=-0.053 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcccccccccCCCChHhHhcHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 013168 215 GGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLI 281 (448)
Q Consensus 215 Gaa~a~~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 281 (448)
..++|..++.++.-..-.+.+.+-|++.+. + .-.+|.....++++..+...+....
T Consensus 69 ri~~aS~~a~lisq~~d~~if~~lk~~~~~-----r------~lw~R~~~St~isq~iDt~if~~ia 124 (145)
T PF02592_consen 69 RIALASLIAFLISQLLDVYIFSKLKRKTKG-----R------SLWLRNNGSTAISQLIDTVIFITIA 124 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----c------cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666555555444332211110 0 1224555666677777766665543
No 69
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=22.45 E-value=85 Score=28.80 Aligned_cols=32 Identities=13% Similarity=0.063 Sum_probs=16.4
Q ss_pred CchhHhHHHHHHHHHHHHHHHHHHHc-C--CHHHH
Q 013168 395 RGRGLWIGIQAGAFTQTLLLGIITTC-T--NWEKQ 426 (448)
Q Consensus 395 g~~gi~~a~~~~~~~~~~~~~~~~~~-~--~w~~~ 426 (448)
...|+..-..+-..+..++++++++| + .||+.
T Consensus 259 ~Pcgiaalvllil~vvliiLYiWlyrrRK~swkhe 293 (295)
T TIGR01478 259 LPYGIAALVLIILTVVLIILYIWLYRRRKKSWKHE 293 (295)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 45666555555444444444444444 3 47764
No 70
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=22.01 E-value=3e+02 Score=25.84 Aligned_cols=52 Identities=10% Similarity=-0.065 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHhcCCC------chhHhHHHHHHHHHHHHHHHHHHHcCCH
Q 013168 371 FVNLGAFYLCGIPTAAILGFWLKFR------GRGLWIGIQAGAFTQTLLLGIITTCTNW 423 (448)
Q Consensus 371 ~~~~~~~~~~~i~~~~~l~~~~~~g------~~gi~~a~~~~~~~~~~~~~~~~~~~~w 423 (448)
..++++ .++..|....-.|..+++ -..-|+......++.+++.+++++|.+|
T Consensus 260 ~LTvvt-~IflP~t~IaGiyGMNf~~mP~l~~~~gy~~~l~~m~~i~~~~~~~fkrk~W 317 (318)
T TIGR00383 260 ILTVVS-TIFIPLTFIAGIYGMNFKFMPELNWKYGYPAVLIVMAVIALGPLIYFRRKGW 317 (318)
T ss_pred HHHHHH-HHHHHHHHHHHHHhCCcccCccccchhHHHHHHHHHHHHHHHHHHHHHHcCC
No 71
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=20.99 E-value=1.8e+02 Score=28.65 Aligned_cols=26 Identities=15% Similarity=0.313 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHH
Q 013168 31 LSGEVKKQGYIAAPMVAVTLSQYLLQ 56 (448)
Q Consensus 31 ~~~~~k~il~~~~P~~~~~~~~~~~~ 56 (448)
..+..|.++++.+|+.+.-+.+.+.+
T Consensus 238 k~~~~k~Ll~ymiPL~lVY~aEY~In 263 (402)
T PF02487_consen 238 KLKRLKPLLWYMIPLFLVYFAEYFIN 263 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777788888888887776653
No 72
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=20.82 E-value=7.5e+02 Score=23.70 Aligned_cols=50 Identities=16% Similarity=0.302 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHhccccc--ccccCCCChHhHhcHHHHHHHHhHHHH
Q 013168 219 AIGISNWLNVTFLAIYMKFSTAC--AESRVPISMELFQGIGEFFHFAIPSAV 268 (448)
Q Consensus 219 a~~i~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~~~ 268 (448)
+..+++.+..+++.....++.+. ++.....++..+...++.+|.++|..+
T Consensus 50 ~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk~~vPa~i 101 (345)
T KOG2234|consen 50 AVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLKVSVPALI 101 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHHHHHHHHH
Confidence 33455555555554444433222 233345556667777899999999975
No 73
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=20.21 E-value=3.5e+02 Score=19.65 Aligned_cols=36 Identities=11% Similarity=0.079 Sum_probs=25.3
Q ss_pred HhHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHH
Q 013168 94 SALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFP 129 (448)
Q Consensus 94 ~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 129 (448)
.-.+..+-..+.+||+|++++.-+++..++.+-.++
T Consensus 38 i~~s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~~ 73 (82)
T PF04505_consen 38 IVYSSKVRSRYAAGDYEGARRASRKAKKWSIIAIII 73 (82)
T ss_pred heechhhHHHHHCCCHHHHHHHHHHhHHHHHHHHHH
Confidence 334445566777899999999888888776554433
No 74
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=20.08 E-value=5.8e+02 Score=24.13 Aligned_cols=56 Identities=14% Similarity=-0.021 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHhhhhhhhHhhcccCCC-cch-----hHHHHHHHHHHHHHHHHHHHhcccc
Q 013168 185 IPMFLSSCAALCLHIPICWSLVYKSGLG-NLG-----GALAIGISNWLNVTFLAIYMKFSTA 240 (448)
Q Consensus 185 ~~~~~~~~~~~~~~i~~~~~li~~~~~G-~~G-----aa~a~~i~~~~~~i~~~~~~~~~~~ 240 (448)
..+-+.++++.++-.+..+.-+++.++. +-+ ..+..+...++.++..+++++|++|
T Consensus 254 ~~mk~lTv~s~if~pptliagiyGMNf~~mP~~~~~~g~~~~l~~~~~~~~~~~~~f~rk~W 315 (316)
T PRK11085 254 RIIKIFSVVSVVFLPPTLVASSYGMNFEFMPELKWSFGYPGAIILMILAGLAPYLYFKRKNW 315 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 3344444444444444444444443322 111 2233333334444445666766553
Done!