Query 013168
Match_columns 448
No_of_seqs 197 out of 1932
Neff 9.9
Searched_HMMs 13730
Date Mon Mar 25 05:28:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013168.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013168hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 54.6 62 0.0045 27.6 17.0 27 210-236 406-432 (447)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 13.7 3.2E+02 0.024 22.4 36.8 26 392-417 405-430 (447)
3 d1v54m_ f.23.7.1 (M:) Mitochon 6.5 91 0.0066 17.3 1.1 24 365-391 14-37 (43)
4 d3cx5c2 f.21.1.2 (C:1-261) Mit 5.3 4.5E+02 0.033 20.7 5.4 65 166-230 90-155 (261)
5 d3dhwa1 f.58.1.1 (A:6-208) D-m 4.9 4.2E+02 0.03 19.3 4.9 39 31-69 126-165 (203)
6 d1q90b_ f.21.1.2 (B:) Cytochro 4.6 5.5E+02 0.04 19.4 5.3 66 164-229 89-155 (212)
7 d3dtub2 f.17.2.1 (B:30-129) Ba 4.1 4.9E+02 0.036 16.7 8.2 18 256-273 70-87 (100)
8 d1xmec1 f.23.9.1 (C:2-34) Bact 4.1 2.8E+02 0.02 13.6 2.7 7 395-401 24-30 (33)
9 d1pd3a_ a.30.3.1 (A:) Nonstruc 3.3 2.7E+02 0.019 15.5 1.6 13 422-434 2-14 (54)
10 d1ppjc2 f.21.1.2 (C:15-260) Mi 3.1 8.5E+02 0.062 18.6 5.4 69 159-229 70-139 (246)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=54.60 E-value=62 Score=27.63 Aligned_cols=27 Identities=26% Similarity=0.230 Sum_probs=14.4
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHh
Q 013168 210 GLGNLGGALAIGISNWLNVTFLAIYMK 236 (448)
Q Consensus 210 ~~G~~Gaa~a~~i~~~~~~i~~~~~~~ 236 (448)
..|..+..+.......+..++......
T Consensus 406 ~~g~~~~~~~~~~~~~~~~~~~~~~~~ 432 (447)
T d1pw4a_ 406 FFGWDGGFMVMIGGSILAVILLIVVMI 432 (447)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666555555555555555444443
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=13.69 E-value=3.2e+02 Score=22.41 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=14.4
Q ss_pred cCCCchhHhHHHHHHHHHHHHHHHHH
Q 013168 392 LKFRGRGLWIGIQAGAFTQTLLLGII 417 (448)
Q Consensus 392 ~~~g~~gi~~a~~~~~~~~~~~~~~~ 417 (448)
.+.|..+.++.......+..++....
T Consensus 405 ~~~g~~~~~~~~~~~~~~~~~~~~~~ 430 (447)
T d1pw4a_ 405 DFFGWDGGFMVMIGGSILAVILLIVV 430 (447)
T ss_dssp HSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 44576666666655555555444433
No 3
>d1v54m_ f.23.7.1 (M:) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.52 E-value=91 Score=17.26 Aligned_cols=24 Identities=21% Similarity=0.088 Sum_probs=13.9
Q ss_pred cchhhHHHHHHHHHHHhHHHHHHHHHh
Q 013168 365 WQNIAAFVNLGAFYLCGIPTAAILGFW 391 (448)
Q Consensus 365 ~~~~~~~~~~~~~~~~~i~~~~~l~~~ 391 (448)
++.+.+.+.+++ +..|..++|.+.
T Consensus 14 E~aigLt~~f~~---~L~PaGwVLshL 37 (43)
T d1v54m_ 14 EQAIGLSVTFLS---FLLPAGWVLYHL 37 (43)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHTH
T ss_pred HHHHHHHHHHHH---HHccHHHHHHHH
Confidence 344444455555 566788877643
No 4
>d3cx5c2 f.21.1.2 (C:1-261) Mitochondrial cytochrome b subunit, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.30 E-value=4.5e+02 Score=20.68 Aligned_cols=65 Identities=12% Similarity=-0.032 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHhhhhhhhHhhcccCCCcchhHHHHHHHHHHHHHH
Q 013168 166 FAYATMQPLIRYFQS-QSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTF 230 (448)
Q Consensus 166 ~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~G~~Gaa~a~~i~~~~~~i~ 230 (448)
.+.......++++.+ .++++...+.+-+...+.+...-+.-+...+|-.+-|-+++++++...+-
T Consensus 90 ~~~~~lH~~r~~~~gsy~~pre~~W~~Gv~l~~l~~~~af~GY~Lpw~q~s~w~~~Vit~l~~~iP 155 (261)
T d3cx5c2 90 FMVMFMHMAKGLYYGSYRSPRVTLWNVGVIIFILTIATAFLGYCCVYGQMSHWGATVITNLFSAIP 155 (261)
T ss_dssp HHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHHHHHHCBHHHHHHHHHHHHGGGGST
T ss_pred HHHHHHHHHHHHHhccccCccchhHHhhHHHHHHHHHHHHhhhhcCCCcchhhHHHHHHHHHHhcC
Confidence 344445556666665 55566666655555544444444444445677778888888888766554
No 5
>d3dhwa1 f.58.1.1 (A:6-208) D-methionine transport system permease protein MetI {Escherichia coli [TaxId: 562]}
Probab=4.86 E-value=4.2e+02 Score=19.27 Aligned_cols=39 Identities=18% Similarity=0.063 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhc-CChh
Q 013168 31 LSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGH-LGQL 69 (448)
Q Consensus 31 ~~~~~k~il~~~~P~~~~~~~~~~~~~id~~~v~~-~g~~ 69 (448)
++..+|-++..+.|.++..........+....+.. +|..
T Consensus 126 ~q~~~~vilP~~~p~i~~~~~~~~~~~i~~~~~~~~ig~~ 165 (203)
T d3dhwa1 126 MQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAG 165 (203)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHCCSTTCC
T ss_pred hhhhHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455556677777777777777766666655554 4443
No 6
>d1q90b_ f.21.1.2 (B:) Cytochrome b6 subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=4.64 E-value=5.5e+02 Score=19.38 Aligned_cols=66 Identities=5% Similarity=-0.068 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHhhhhhhhHhhcccCCCcchhHHHHHHHHHHHHH
Q 013168 164 ALFAYATMQPLIRYFQS-QSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVT 229 (448)
Q Consensus 164 ~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~G~~Gaa~a~~i~~~~~~i 229 (448)
.+.+.......+.++.+ .++++-..+.+.+...+.....-+.-+...+|-.+-+-+++..++...+
T Consensus 89 ~~~~~~~lHm~r~~~~gsyk~pre~~W~~Gv~l~~l~m~~aftGY~Lpw~q~sywa~~V~~~l~~~i 155 (212)
T d1q90b_ 89 MMVLMMVLHVFRVYLTGGFKRPRELTWVTGVIMAVCTVSFGVTGYSLPWDQVGYWAVKIVTGVPDAI 155 (212)
T ss_dssp HHHHHHHHHHHHHHTTTTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHGGGGS
T ss_pred HHHHHHHHHHHHHHHcCcccCcccceehHhHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHHHH
Confidence 33344555566666665 5666666665555555544444445555668888888888888776554
No 7
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=4.15 E-value=4.9e+02 Score=16.65 Aligned_cols=18 Identities=11% Similarity=0.224 Sum_probs=12.9
Q ss_pred HHHHHHHHhHHHHHHHHH
Q 013168 256 IGEFFHFAIPSAVMICLE 273 (448)
Q Consensus 256 ~~~~~~~~~p~~~~~~~~ 273 (448)
.-|+.-..+|..+-..+.
T Consensus 70 ~LEiiWTviP~lILi~l~ 87 (100)
T d3dtub2 70 PLEIAWTIVPIVILVAIG 87 (100)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 358888888987755543
No 8
>d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase subunit IIa {Thermus thermophilus [TaxId: 274]}
Probab=4.10 E-value=2.8e+02 Score=13.62 Aligned_cols=7 Identities=0% Similarity=0.040 Sum_probs=3.4
Q ss_pred CchhHhH
Q 013168 395 RGRGLWI 401 (448)
Q Consensus 395 g~~gi~~ 401 (448)
|+..+++
T Consensus 24 gv~avf~ 30 (33)
T d1xmec1 24 GVYAVFF 30 (33)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5554443
No 9
>d1pd3a_ a.30.3.1 (A:) Nonstructural protein ns2, Nep, M1-binding domain {Influenza A virus [TaxId: 11320]}
Probab=3.32 E-value=2.7e+02 Score=15.46 Aligned_cols=13 Identities=31% Similarity=0.626 Sum_probs=8.3
Q ss_pred CHHHHHHHHHHHH
Q 013168 422 NWEKQASKARERI 434 (448)
Q Consensus 422 ~w~~~~~~~~~~~ 434 (448)
+|+.+..+..|++
T Consensus 2 kwreqlsqkfeei 14 (54)
T d1pd3a_ 2 KWREQLGQKFEEI 14 (54)
T ss_dssp HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH
Confidence 5777766666554
No 10
>d1ppjc2 f.21.1.2 (C:15-260) Mitochondrial cytochrome b subunit, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.13 E-value=8.5e+02 Score=18.63 Aligned_cols=69 Identities=14% Similarity=0.007 Sum_probs=0.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHhhhhhhhHhhcccCCCcchhHHHHHHHHHHHHH
Q 013168 159 IWLLPALFAYATMQPLIRYFQS-QSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVT 229 (448)
Q Consensus 159 ~i~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~G~~Gaa~a~~i~~~~~~i 229 (448)
...+-.+.+.......++++.+ .++++. +..-+...+.+...-.+-+...+|-.+-|-+++++++...+
T Consensus 70 ~~gas~~~~~~~lHm~r~~~~~sy~~~~~--w~~G~~l~~l~m~~af~GY~Lpw~qms~wa~~V~t~l~~~i 139 (246)
T d1ppjc2 70 ANGASMFFICLYMHVGRGLYYGSYTFLET--WNIGVILLLTVMATAFMGYVLPWGQMSFWGATVITNLLSAI 139 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTGGGSHHH--HHHHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHGGGGGS
T ss_pred HhHHHHHHHHHHHHHHHHHHhcCccchHH--HHHHHHHHHHHHHHHHeeccCCCcchhHHHHHHHHHHHHHH
Done!