BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 013170
         (448 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
           With Trans-Dihydroquercetin
 pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
           With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
          Length = 356

 Score = 33.1 bits (74), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 3/55 (5%)

Query: 317 KSSPESFIIQVGESADILSKGKLRSTLHCVCRPTKLENLSRETFVVFLQPAWNKT 371
           K  P+S ++ +G++ +ILS GK +S LH   R    +   R ++ VF +P  +K 
Sbjct: 261 KCVPDSIVMHIGDTLEILSNGKYKSILH---RGLVNKEKVRISWAVFCEPPKDKI 312


>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
           With Naringenin
          Length = 355

 Score = 33.1 bits (74), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 3/55 (5%)

Query: 317 KSSPESFIIQVGESADILSKGKLRSTLHCVCRPTKLENLSRETFVVFLQPAWNKT 371
           K  P+S ++ +G++ +ILS GK +S LH   R    +   R ++ VF +P  +K 
Sbjct: 260 KCVPDSIVMHIGDTLEILSNGKYKSILH---RGLVNKEKVRISWAVFCEPPKDKI 311


>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
           (Selenomethionine Substituted)
          Length = 356

 Score = 31.6 bits (70), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 317 KSSPESFIIQVGESADILSKGKLRSTLHCVCRPTKLENLSRETFVVFLQPAWNKT 371
           K  P+S +  +G++ +ILS GK +S LH   R    +   R ++ VF +P  +K 
Sbjct: 261 KCVPDSIVXHIGDTLEILSNGKYKSILH---RGLVNKEKVRISWAVFCEPPKDKI 312


>pdb|1VHS|A Chain A, Crystal Structure Of A Putative Phosphinothricin N-
           Acetyltransferase
 pdb|1VHS|B Chain B, Crystal Structure Of A Putative Phosphinothricin N-
           Acetyltransferase
          Length = 175

 Score = 28.9 bits (63), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)

Query: 355 LSRETFVVFLQPAWNKTFSISDYPTENCNLSGQGS 389
           +S ETF  + +PA+NKT  +S Y  E C   G GS
Sbjct: 68  ISFETF--YGRPAYNKTAEVSIYIDEACRGKGVGS 100


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.133    0.393 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,236,282
Number of Sequences: 62578
Number of extensions: 524265
Number of successful extensions: 678
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 675
Number of HSP's gapped (non-prelim): 4
length of query: 448
length of database: 14,973,337
effective HSP length: 102
effective length of query: 346
effective length of database: 8,590,381
effective search space: 2972271826
effective search space used: 2972271826
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (25.0 bits)