Query 013171
Match_columns 448
No_of_seqs 279 out of 2609
Neff 11.3
Searched_HMMs 46136
Date Fri Mar 29 01:07:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013171.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013171hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 3.7E-38 8E-43 325.2 19.8 381 45-430 57-462 (968)
2 PLN00113 leucine-rich repeat r 100.0 5.7E-38 1.2E-42 323.8 20.6 373 55-430 162-581 (968)
3 KOG4194 Membrane glycoprotein 100.0 7.3E-37 1.6E-41 271.3 4.6 394 47-445 68-464 (873)
4 KOG4194 Membrane glycoprotein 100.0 1.5E-35 3.2E-40 263.0 4.1 372 56-431 51-427 (873)
5 KOG0444 Cytoskeletal regulator 99.9 2.3E-29 5.1E-34 226.0 -4.9 367 56-434 6-376 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 4.1E-28 9E-33 218.0 -4.7 355 78-441 4-361 (1255)
7 KOG0472 Leucine-rich repeat pr 99.9 3E-27 6.5E-32 201.4 -11.4 363 55-432 66-540 (565)
8 KOG0618 Serine/threonine phosp 99.9 1E-24 2.2E-29 204.4 -0.7 369 58-441 46-499 (1081)
9 PLN03210 Resistant to P. syrin 99.9 6.8E-22 1.5E-26 204.9 16.9 362 57-435 532-908 (1153)
10 PLN03210 Resistant to P. syrin 99.9 1.5E-20 3.2E-25 195.0 19.8 368 52-437 553-947 (1153)
11 KOG0618 Serine/threonine phosp 99.8 1.7E-22 3.8E-27 189.6 -2.0 363 59-440 23-471 (1081)
12 KOG0472 Leucine-rich repeat pr 99.8 2.6E-23 5.7E-28 177.5 -7.8 338 57-410 160-542 (565)
13 cd00116 LRR_RI Leucine-rich re 99.8 1.3E-18 2.9E-23 157.5 20.8 254 178-431 21-318 (319)
14 cd00116 LRR_RI Leucine-rich re 99.8 4.9E-18 1.1E-22 153.8 21.1 260 185-445 3-302 (319)
15 KOG4237 Extracellular matrix p 99.8 9.9E-21 2.1E-25 161.5 0.9 258 51-310 61-356 (498)
16 KOG4237 Extracellular matrix p 99.8 1.5E-20 3.1E-25 160.5 -0.7 288 157-445 69-371 (498)
17 KOG1909 Ran GTPase-activating 99.7 2E-15 4.3E-20 127.6 13.2 197 248-445 88-324 (382)
18 PRK15387 E3 ubiquitin-protein 99.6 4.9E-15 1.1E-19 143.6 15.4 83 325-416 383-465 (788)
19 PRK15387 E3 ubiquitin-protein 99.6 7.4E-15 1.6E-19 142.4 13.0 266 132-443 202-467 (788)
20 KOG4341 F-box protein containi 99.5 4.7E-15 1E-19 128.2 4.7 357 1-357 74-461 (483)
21 KOG4658 Apoptotic ATPase [Sign 99.5 6.2E-16 1.3E-20 153.0 -1.2 206 3-213 452-677 (889)
22 KOG1909 Ran GTPase-activating 99.5 6.9E-13 1.5E-17 112.4 12.6 219 226-445 28-294 (382)
23 PRK15370 E3 ubiquitin-protein 99.5 4.6E-13 1E-17 130.8 13.4 232 181-440 200-434 (754)
24 PRK15370 E3 ubiquitin-protein 99.4 5.3E-12 1.2E-16 123.5 12.9 249 132-411 179-430 (754)
25 KOG4341 F-box protein containi 99.3 1.1E-12 2.4E-17 113.7 4.5 300 33-332 140-460 (483)
26 KOG2120 SCF ubiquitin ligase, 99.3 8.4E-12 1.8E-16 103.6 6.1 185 54-239 182-374 (419)
27 KOG0617 Ras suppressor protein 99.2 6.3E-14 1.4E-18 106.5 -6.5 188 226-443 31-222 (264)
28 KOG3207 Beta-tubulin folding c 99.2 4.4E-12 9.6E-17 110.7 3.2 207 33-241 123-339 (505)
29 KOG0617 Ras suppressor protein 99.2 2.4E-13 5.1E-18 103.4 -6.7 155 81-242 33-187 (264)
30 KOG2120 SCF ubiquitin ligase, 99.2 1.8E-11 4E-16 101.7 3.5 179 228-406 185-373 (419)
31 COG5238 RNA1 Ran GTPase-activa 99.1 2.5E-10 5.4E-15 93.8 9.2 191 246-437 86-319 (388)
32 KOG4658 Apoptotic ATPase [Sign 99.1 2.2E-11 4.7E-16 121.2 2.5 133 55-190 543-678 (889)
33 KOG3207 Beta-tubulin folding c 99.1 2.7E-11 5.8E-16 106.0 1.5 209 201-409 118-339 (505)
34 PF14580 LRR_9: Leucine-rich r 99.1 1.7E-10 3.6E-15 91.8 4.8 125 301-429 20-149 (175)
35 PF14580 LRR_9: Leucine-rich r 99.0 3E-10 6.6E-15 90.4 4.0 128 274-405 17-149 (175)
36 KOG1259 Nischarin, modulator o 98.9 4.6E-10 1E-14 93.6 2.0 130 203-338 283-413 (490)
37 KOG1259 Nischarin, modulator o 98.9 4.9E-10 1.1E-14 93.5 1.0 129 228-362 284-413 (490)
38 COG5238 RNA1 Ran GTPase-activa 98.8 8E-08 1.7E-12 79.4 12.5 206 225-430 27-282 (388)
39 PF13855 LRR_8: Leucine rich r 98.7 2.7E-09 5.9E-14 69.7 1.0 59 372-430 1-59 (61)
40 PF13855 LRR_8: Leucine rich r 98.7 7.9E-09 1.7E-13 67.4 1.3 61 348-408 1-61 (61)
41 PLN03150 hypothetical protein; 98.7 4.2E-08 9.2E-13 95.9 6.9 108 326-433 420-528 (623)
42 KOG2982 Uncharacterized conser 98.6 2.7E-08 5.9E-13 83.2 3.5 64 347-410 198-263 (418)
43 KOG3665 ZYG-1-like serine/thre 98.6 1.5E-07 3.2E-12 91.9 7.6 138 81-220 122-266 (699)
44 COG4886 Leucine-rich repeat (L 98.5 1.5E-07 3.3E-12 87.8 5.4 196 184-388 97-293 (394)
45 PLN03150 hypothetical protein; 98.5 3.2E-07 6.9E-12 89.8 7.7 108 301-408 419-527 (623)
46 KOG2982 Uncharacterized conser 98.5 2.2E-07 4.8E-12 77.9 5.1 210 79-289 43-262 (418)
47 KOG0532 Leucine-rich repeat (L 98.4 8.4E-09 1.8E-13 93.7 -4.1 155 224-386 94-248 (722)
48 COG4886 Leucine-rich repeat (L 98.4 3.1E-07 6.8E-12 85.7 5.6 183 176-366 112-295 (394)
49 KOG0531 Protein phosphatase 1, 98.4 1.7E-08 3.6E-13 94.3 -4.2 221 176-409 91-318 (414)
50 KOG1947 Leucine rich repeat pr 98.4 7.6E-07 1.7E-11 85.7 6.7 231 203-443 187-450 (482)
51 KOG3665 ZYG-1-like serine/thre 98.3 7.6E-07 1.6E-11 87.0 6.4 153 55-210 120-281 (699)
52 KOG1859 Leucine-rich repeat pr 98.3 2.3E-08 5.1E-13 93.5 -5.0 125 301-431 165-290 (1096)
53 KOG1859 Leucine-rich repeat pr 98.3 4E-08 8.8E-13 92.0 -3.5 107 249-360 184-291 (1096)
54 KOG1947 Leucine rich repeat pr 98.3 1.2E-06 2.5E-11 84.5 5.8 143 45-187 176-328 (482)
55 KOG0532 Leucine-rich repeat (L 98.2 3.9E-08 8.4E-13 89.5 -4.5 169 185-362 80-248 (722)
56 KOG0531 Protein phosphatase 1, 98.2 1E-07 2.3E-12 89.0 -2.8 215 202-430 70-287 (414)
57 KOG1644 U2-associated snRNP A' 98.0 1.1E-05 2.3E-10 64.1 4.6 102 302-405 44-149 (233)
58 PF13306 LRR_5: Leucine rich r 97.9 1.8E-05 3.9E-10 60.9 4.7 121 296-422 8-128 (129)
59 KOG1644 U2-associated snRNP A' 97.8 2.1E-05 4.6E-10 62.5 4.3 105 324-430 42-150 (233)
60 PF13306 LRR_5: Leucine rich r 97.7 4.9E-05 1.1E-09 58.4 5.1 122 272-399 8-129 (129)
61 KOG3864 Uncharacterized conser 97.7 2.2E-05 4.8E-10 62.4 2.6 84 58-141 102-186 (221)
62 KOG4579 Leucine-rich repeat (L 97.7 1.4E-05 3.1E-10 59.3 1.2 112 301-414 28-141 (177)
63 PF12799 LRR_4: Leucine Rich r 97.7 5.2E-05 1.1E-09 45.1 3.2 38 372-410 1-38 (44)
64 PF12799 LRR_4: Leucine Rich r 97.7 8.5E-05 1.8E-09 44.1 3.9 33 397-430 2-34 (44)
65 KOG4579 Leucine-rich repeat (L 97.5 1.8E-05 4E-10 58.7 -0.6 110 277-388 28-139 (177)
66 KOG3864 Uncharacterized conser 97.4 0.00018 4E-09 57.3 3.7 80 326-405 103-185 (221)
67 PRK15386 type III secretion pr 97.3 0.0013 2.9E-08 59.7 9.1 136 224-382 48-187 (426)
68 KOG2123 Uncharacterized conser 97.2 5.2E-05 1.1E-09 63.4 -1.1 100 299-402 18-123 (388)
69 KOG2123 Uncharacterized conser 97.1 7.8E-05 1.7E-09 62.4 -0.7 109 323-438 18-132 (388)
70 smart00367 LRR_CC Leucine-rich 97.1 0.00072 1.6E-08 34.9 2.9 25 419-443 1-25 (26)
71 KOG2739 Leucine-rich acidic nu 96.8 0.00063 1.4E-08 56.7 1.8 36 348-383 91-127 (260)
72 PRK15386 type III secretion pr 96.8 0.0057 1.2E-07 55.7 7.7 166 247-437 47-217 (426)
73 KOG4308 LRR-containing protein 96.8 0.00032 7E-09 65.9 -0.2 83 206-288 89-184 (478)
74 KOG2739 Leucine-rich acidic nu 96.6 0.00068 1.5E-08 56.5 0.9 106 323-430 42-153 (260)
75 KOG4308 LRR-containing protein 96.5 0.00055 1.2E-08 64.4 -0.5 213 230-442 89-340 (478)
76 PF13516 LRR_6: Leucine Rich r 95.4 0.0092 2E-07 30.0 1.4 23 419-442 1-23 (24)
77 smart00368 LRR_RI Leucine rich 94.8 0.046 1E-06 28.6 3.0 26 420-446 2-27 (28)
78 PF13516 LRR_6: Leucine Rich r 94.2 0.031 6.6E-07 28.0 1.4 21 396-416 2-22 (24)
79 smart00367 LRR_CC Leucine-rich 93.8 0.072 1.6E-06 27.3 2.3 23 80-102 1-23 (26)
80 PF00560 LRR_1: Leucine Rich R 91.8 0.041 8.9E-07 26.9 -0.2 12 398-409 2-13 (22)
81 PF13504 LRR_7: Leucine rich r 88.8 0.35 7.5E-06 21.8 1.5 12 397-408 2-13 (17)
82 smart00369 LRR_TYP Leucine-ric 84.9 0.79 1.7E-05 23.3 1.7 16 396-411 2-17 (26)
83 smart00370 LRR Leucine-rich re 84.9 0.79 1.7E-05 23.3 1.7 16 396-411 2-17 (26)
84 KOG3763 mRNA export factor TAP 68.1 6.6 0.00014 37.4 3.7 14 299-312 217-230 (585)
85 smart00365 LRR_SD22 Leucine-ri 62.3 6.2 0.00013 20.2 1.4 14 396-409 2-15 (26)
86 PF14162 YozD: YozD-like prote 59.9 10 0.00022 22.8 2.2 19 4-22 11-29 (57)
87 KOG3763 mRNA export factor TAP 54.9 12 0.00026 35.7 3.0 80 346-427 216-308 (585)
88 KOG4242 Predicted myosin-I-bin 40.8 77 0.0017 30.0 5.7 111 325-436 355-483 (553)
89 smart00364 LRR_BAC Leucine-ric 39.5 22 0.00047 18.2 1.2 13 373-385 3-15 (26)
90 KOG0473 Leucine-rich repeat pr 31.8 1.2 2.5E-05 37.2 -6.3 89 296-387 38-126 (326)
91 KOG0473 Leucine-rich repeat pr 29.5 2.4 5.2E-05 35.5 -4.9 61 76-140 37-97 (326)
92 KOG3735 Tropomodulin and leiom 27.4 1.1E+02 0.0023 27.6 4.3 83 347-429 197-292 (353)
93 smart00446 LRRcap occurring C- 21.3 44 0.00096 17.1 0.5 14 101-114 8-21 (26)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.7e-38 Score=325.20 Aligned_cols=381 Identities=19% Similarity=0.165 Sum_probs=210.2
Q ss_pred ChHHHHHHHhcCCCccEEEcccCCCChHHhHhccCCCCCCeEeccCCcccChhHH-HhhcCCCCCCEEeCCCCccccHHH
Q 013171 45 NDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGL-EHLRGLSNLTSLSFRRNNAITAQG 123 (448)
Q Consensus 45 ~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~ 123 (448)
.+.|.++.+...++++.|+++++.+++..+..+..+++|++|++++| .+....+ ..+..+++|++|++++|... +..
T Consensus 57 ~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n-~~~~~ip~~~~~~l~~L~~L~Ls~n~l~-~~~ 134 (968)
T PLN00113 57 VCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNN-QLSGPIPDDIFTTSSSLRYLNLSNNNFT-GSI 134 (968)
T ss_pred CCcCcceecCCCCcEEEEEecCCCccccCChHHhCCCCCCEEECCCC-ccCCcCChHHhccCCCCCEEECcCCccc-ccc
Confidence 34666666655667888888887777777777778888888888876 4443333 33446777777777776542 111
Q ss_pred HHHHhCCCCCcEEecCCccccccchhhccCCCCCcEEeccCCCccCccccccCcCCCCccEEEecCCCCChHHHHhccCC
Q 013171 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL 203 (448)
Q Consensus 124 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 203 (448)
+ ...+++|++|++++|......+..+..+++|++|++++|. +....+..+.++++|++|++++|.+.+..+..+..+
T Consensus 135 p--~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 211 (968)
T PLN00113 135 P--RGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNV-LVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQM 211 (968)
T ss_pred C--ccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCc-ccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCc
Confidence 2 1345556666665554443444455555566666665532 222334445555555555555555554444555555
Q ss_pred CCCCeEecCCCCCchhHHHHHhcCCCCCEEEccCccCChhhHHhhhcCCCCcEEEccCCCcChhHHHHhhCCCCCcEEec
Q 013171 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283 (448)
Q Consensus 204 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l 283 (448)
++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++
T Consensus 212 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 291 (968)
T PLN00113 212 KSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDL 291 (968)
T ss_pred CCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEEC
Confidence 55555555555554444444555555555555555554444444555555555555555544444444444555555555
Q ss_pred cCCccCcchhhhhhCCCCCCEeeccCCCCCcchhhhhcCCCCCCEEeccCCCCChHHHHHHhCC----------------
Q 013171 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL---------------- 347 (448)
Q Consensus 284 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~---------------- 347 (448)
++|.+....+..+..+++|+.|++.+|.+....+..+..+++|+.|++++|.+....+..++.+
T Consensus 292 s~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~ 371 (968)
T PLN00113 292 SDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGE 371 (968)
T ss_pred cCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEee
Confidence 5554444444444444555555555554444344444444455555555444443334444444
Q ss_pred --------CCCcEeEccCCCCChhhHHHhhCCCCCCEEEcCCCCCChHHHHhhhCCCCCCEEeeCCCCCChhHHHhhhcC
Q 013171 348 --------SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 419 (448)
Q Consensus 348 --------~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 419 (448)
++|+.|++.+|.+.+..+..+..+++|+.|++++|.+++..+..+..++.|+.|++++|.+.+..+..+..+
T Consensus 372 ~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 451 (968)
T PLN00113 372 IPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDM 451 (968)
T ss_pred CChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccC
Confidence 445555555544444444455555666666666666655555555666666666666666665555555566
Q ss_pred CCCCeecccCC
Q 013171 420 SSLTLLNLSQN 430 (448)
Q Consensus 420 ~~L~~l~l~~~ 430 (448)
++|+.|++++|
T Consensus 452 ~~L~~L~L~~n 462 (968)
T PLN00113 452 PSLQMLSLARN 462 (968)
T ss_pred CCCcEEECcCc
Confidence 66666666666
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=5.7e-38 Score=323.80 Aligned_cols=373 Identities=23% Similarity=0.213 Sum_probs=198.4
Q ss_pred cCCCccEEEcccCCCChHHhHhccCCCCCCeEeccCCcccChhHHHhhcCCCCCCEEeCCCCccccHHHHHHHhCCCCCc
Q 013171 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134 (448)
Q Consensus 55 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 134 (448)
.+++|++|+++++.+.+..+..++++++|++|++++| .+....+..+.++++|++|++++|.. ....+..+.++++|+
T Consensus 162 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~L~~n~l-~~~~p~~l~~l~~L~ 239 (968)
T PLN00113 162 SFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASN-QLVGQIPRELGQMKSLKWIYLGYNNL-SGEIPYEIGGLTSLN 239 (968)
T ss_pred cCCCCCEEECccCcccccCChhhhhCcCCCeeeccCC-CCcCcCChHHcCcCCccEEECcCCcc-CCcCChhHhcCCCCC
Confidence 4556666666666665555566666666666666665 34444455556666666666666553 334455555666666
Q ss_pred EEecCCccccccchhhccCCCCCcEEeccCCCccCccccccCcCCCCccEEEecCCCCChHHHHhccCCCCCCeEecCCC
Q 013171 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214 (448)
Q Consensus 135 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 214 (448)
+|++++|......+..+..+++|++|++.+|. +.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++.+|
T Consensus 240 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n 318 (968)
T PLN00113 240 HLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNK-LSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSN 318 (968)
T ss_pred EEECcCceeccccChhHhCCCCCCEEECcCCe-eeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCC
Confidence 66665554444444455555555555555532 22233334444455555555555444444444444444444444444
Q ss_pred CCchhHHHHHhcCCCCCEEEccCccCChhhHHhhhcCCCCcEEEccC------------------------CCcChhHHH
Q 013171 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF------------------------NEITDECLV 270 (448)
Q Consensus 215 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~------------------------~~~~~~~~~ 270 (448)
.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++ |.+.+..+.
T Consensus 319 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~ 398 (968)
T PLN00113 319 NFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPK 398 (968)
T ss_pred ccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCH
Confidence 44433334444444444444444444333333333344444444433 333333333
Q ss_pred HhhCCCCCcEEeccCCccCcchhhhhhCCCCCCEeeccCCCCCcchhhhhcCC-----------------------CCCC
Q 013171 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL-----------------------TNLE 327 (448)
Q Consensus 271 ~l~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~-----------------------~~L~ 327 (448)
.+..+++|+.+++.+|.+....+..+..++.|+.|++++|.+....+..+..+ ++|+
T Consensus 399 ~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~ 478 (968)
T PLN00113 399 SLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLE 478 (968)
T ss_pred HHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccce
Confidence 44445555555555555444444444445555555555554443333222233 3445
Q ss_pred EEeccCCCCChHHHHHHhCCCCCcEeEccCCCCChhhHHHhhCCCCCCEEEcCCCCCChHHHHhhhCCCCCCEEeeCCCC
Q 013171 328 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 407 (448)
Q Consensus 328 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 407 (448)
.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|+
T Consensus 479 ~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 558 (968)
T PLN00113 479 NLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQ 558 (968)
T ss_pred EEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCc
Confidence 55555555544444555556666666666666665555566666666666666666666666666666666666666666
Q ss_pred CChhHHHhhhcCCCCCeecccCC
Q 013171 408 LTDAGVKHIKDLSSLTLLNLSQN 430 (448)
Q Consensus 408 ~~~~~~~~l~~~~~L~~l~l~~~ 430 (448)
+.+..|..+.++++|+.+++++|
T Consensus 559 l~~~~p~~l~~l~~L~~l~ls~N 581 (968)
T PLN00113 559 LSGEIPKNLGNVESLVQVNISHN 581 (968)
T ss_pred ccccCChhHhcCcccCEEeccCC
Confidence 66666666666666666666666
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=7.3e-37 Score=271.28 Aligned_cols=394 Identities=23% Similarity=0.247 Sum_probs=329.5
Q ss_pred HHHHHHHhcCCCccEEEcccCCCChHHhHhccCCCCCCeEeccCCcccChhHHHhhcCCCCCCEEeCCCCccccHHHHHH
Q 013171 47 KWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126 (448)
Q Consensus 47 ~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 126 (448)
+|......-++..+.|++++|.+.+..+..|.++++|+.+++..| .++.+ |.......+|+.|++.+|. ++.....+
T Consensus 68 ~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N-~Lt~I-P~f~~~sghl~~L~L~~N~-I~sv~se~ 144 (873)
T KOG4194|consen 68 DKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKN-ELTRI-PRFGHESGHLEKLDLRHNL-ISSVTSEE 144 (873)
T ss_pred cccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccc-hhhhc-ccccccccceeEEeeeccc-cccccHHH
Confidence 454444445678889999999998888888899999999999885 44432 4433455679999999886 45666788
Q ss_pred HhCCCCCcEEecCCccccccchhhccCCCCCcEEeccCCCccCccccccCcCCCCccEEEecCCCCChHHHHhccCCCCC
Q 013171 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 206 (448)
Q Consensus 127 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 206 (448)
+..++.||+||++.|.........+..-.++++|++.+ +.++......|..+.+|..|.++.|.++......|.++++|
T Consensus 145 L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~-N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L 223 (873)
T KOG4194|consen 145 LSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLAS-NRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKL 223 (873)
T ss_pred HHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecc-ccccccccccccccchheeeecccCcccccCHHHhhhcchh
Confidence 88999999999998765555556677778899999998 45666677788888899999999999998888889999999
Q ss_pred CeEecCCCCCchhHHHHHhcCCCCCEEEccCccCChhhHHhhhcCCCCcEEEccCCCcChhHHHHhhCCCCCcEEeccCC
Q 013171 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 286 (448)
Q Consensus 207 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~ 286 (448)
+.|++..|.+...-.-.|..+++|+.|.+..|.+.......|..+.++++|++..|+++.....++.++..|+.|++++|
T Consensus 224 ~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~N 303 (873)
T KOG4194|consen 224 ESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYN 303 (873)
T ss_pred hhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchh
Confidence 99999998776544456788999999999999988777777888999999999999887766667788999999999999
Q ss_pred ccCcchhhhhhCCCCCCEeeccCCCCCcchhhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEccCCCCCh---h
Q 013171 287 GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD---T 363 (448)
Q Consensus 287 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~---~ 363 (448)
.+....+..+..+++|+.|+++.|+++......+..+..|+.|+|+.|.+....-.+|..+++|++|+++.|.++. +
T Consensus 304 aI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IED 383 (873)
T KOG4194|consen 304 AIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIED 383 (873)
T ss_pred hhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEec
Confidence 9888888888888999999999999998888888888999999999999888777888889999999999988763 3
Q ss_pred hHHHhhCCCCCCEEEcCCCCCChHHHHhhhCCCCCCEEeeCCCCCChhHHHhhhcCCCCCeecccCCCCCCHHHHHHHHh
Q 013171 364 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 443 (448)
Q Consensus 364 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~l~~~~~~~l~~ 443 (448)
....+..+++|+.|.+.||++..+...+|..++.|+.|++.+|.|..+.+++|..+ .|++|.+..-.-+.|..++.+.+
T Consensus 384 aa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~Wl~q 462 (873)
T KOG4194|consen 384 AAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLKWLAQ 462 (873)
T ss_pred chhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEeccHHHHHH
Confidence 45567789999999999999999888899999999999999999999999999988 99999987766788888888777
Q ss_pred hh
Q 013171 444 IL 445 (448)
Q Consensus 444 ~~ 445 (448)
++
T Consensus 463 Wl 464 (873)
T KOG4194|consen 463 WL 464 (873)
T ss_pred HH
Confidence 65
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-35 Score=262.99 Aligned_cols=372 Identities=24% Similarity=0.255 Sum_probs=322.2
Q ss_pred CCCccEEEcccCCCChHHhHhcc-CC-CCCCeEeccCCcccChhHHHhhcCCCCCCEEeCCCCccccHHHHHHHhCCCCC
Q 013171 56 GSSLLSVDLSGSDVTDSGLIHLK-DC-SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133 (448)
Q Consensus 56 ~~~l~~L~l~~~~~~~~~~~~~~-~~-~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L 133 (448)
..+.+.|+.+...+.......+. .+ +.-+.|++++| .+....+..|.++++|+.+++..|.. ..+|.......+|
T Consensus 51 ~c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnN-kl~~id~~~f~nl~nLq~v~l~~N~L--t~IP~f~~~sghl 127 (873)
T KOG4194|consen 51 PCNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNN-KLSHIDFEFFYNLPNLQEVNLNKNEL--TRIPRFGHESGHL 127 (873)
T ss_pred CCCceeeecCccccccccccccCCcCccceeeeecccc-ccccCcHHHHhcCCcceeeeeccchh--hhcccccccccce
Confidence 34677788888777654433343 33 35788999997 78888899999999999999999874 4556655667789
Q ss_pred cEEecCCccccccchhhccCCCCCcEEeccCCCccCccccccCcCCCCccEEEecCCCCChHHHHhccCCCCCCeEecCC
Q 013171 134 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213 (448)
Q Consensus 134 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 213 (448)
+.|++.+|.........+..++.|++|+++. +.+.......+..-.++++|++++|.++......|..+.+|.+|.++.
T Consensus 128 ~~L~L~~N~I~sv~se~L~~l~alrslDLSr-N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsr 206 (873)
T KOG4194|consen 128 EKLDLRHNLISSVTSEELSALPALRSLDLSR-NLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSR 206 (873)
T ss_pred eEEeeeccccccccHHHHHhHhhhhhhhhhh-chhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeeccc
Confidence 9999999877666777889999999999998 556656666777778999999999999998888899999999999999
Q ss_pred CCCchhHHHHHhcCCCCCEEEccCccCChhhHHhhhcCCCCcEEEccCCCcChhHHHHhhCCCCCcEEeccCCccCcchh
Q 013171 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293 (448)
Q Consensus 214 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~ 293 (448)
|.++......|.++++|+.|++..|.+...-...|.++++|+.|.+..|.+.......|..+.+++.|++..|++.....
T Consensus 207 NrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~ 286 (873)
T KOG4194|consen 207 NRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNE 286 (873)
T ss_pred CcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhc
Confidence 99999888899999999999999999876656678999999999999998876656678889999999999999887766
Q ss_pred hhhhCCCCCCEeeccCCCCCcchhhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEccCCCCChhhHHHhhCCCC
Q 013171 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 373 (448)
Q Consensus 294 ~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~ 373 (448)
..+.++..|+.|+++.|.+....+..+..++.|+.|+|+.|.++......+..+..|++|.++.|.++...-.++..+++
T Consensus 287 g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lss 366 (873)
T KOG4194|consen 287 GWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSS 366 (873)
T ss_pred ccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhh
Confidence 77778999999999999999888888899999999999999999988888999999999999999999887788889999
Q ss_pred CCEEEcCCCCCCh---HHHHhhhCCCCCCEEeeCCCCCChhHHHhhhcCCCCCeecccCCC
Q 013171 374 LTHLDLFGARITD---SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 431 (448)
Q Consensus 374 L~~L~l~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~ 431 (448)
|++|+|+.|.+.. +....+..+++|+.|.+.+|++..+.-.+|.+++.||+|++.+|+
T Consensus 367 L~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 367 LHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred hhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCc
Confidence 9999999998763 346678889999999999999999988999999999999999994
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.94 E-value=2.3e-29 Score=225.97 Aligned_cols=367 Identities=21% Similarity=0.207 Sum_probs=290.3
Q ss_pred CCCccEEEcccCCCC-hHHhHhccCCCCCCeEeccCCcccChhHHHhhcCCCCCCEEeCCCCccccHHHHHHHhCCCCCc
Q 013171 56 GSSLLSVDLSGSDVT-DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134 (448)
Q Consensus 56 ~~~l~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 134 (448)
.|-+|-+|+++|.++ +..|.....+.+++-|.|... .+ ...|+.++.+.+|++|.+..|+. ...-..+..++.|+
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt-~L-~~vPeEL~~lqkLEHLs~~HN~L--~~vhGELs~Lp~LR 81 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRT-KL-EQVPEELSRLQKLEHLSMAHNQL--ISVHGELSDLPRLR 81 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechh-hh-hhChHHHHHHhhhhhhhhhhhhh--HhhhhhhccchhhH
Confidence 456788888888887 455667778888888888663 33 33577788888899999888875 34456677888888
Q ss_pred EEecCCcc-ccccchhhccCCCCCcEEeccCCCccCccccccCcCCCCccEEEecCCCCChHHHHhccCCCCCCeEecCC
Q 013171 135 KLDLERCT-RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213 (448)
Q Consensus 135 ~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 213 (448)
.+.+..|. ...+.|..+-++..|..|++++ +++. ..|..+...+++-.|++++|++.......+.++..|-.|++++
T Consensus 82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLSh-NqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~ 159 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSH-NQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN 159 (1255)
T ss_pred HHhhhccccccCCCCchhcccccceeeecch-hhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc
Confidence 88887655 3345567788888899999988 4454 3566777888888999999998877666777888888999999
Q ss_pred CCCchhHHHHHhcCCCCCEEEccCccCChhhHHhhhcCCCCcEEEccCCCcC-hhHHHHhhCCCCCcEEeccCCccCcch
Q 013171 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT-DECLVHLKGLTNLESLNLDSCGIGDEG 292 (448)
Q Consensus 214 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~l~l~~~~~~~~~ 292 (448)
|.+... |+.+..+..|++|.+++|.+.......+..+++|+.|.+++.+-+ +..|..+..+.+|..++++.|.+. ..
T Consensus 160 NrLe~L-PPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~v 237 (1255)
T KOG0444|consen 160 NRLEML-PPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IV 237 (1255)
T ss_pred chhhhc-CHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cc
Confidence 877654 556788889999999999887766666677778888888876533 234556677889999999998876 56
Q ss_pred hhhhhCCCCCCEeeccCCCCCcchhhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEccCCCCChh-hHHHhhCC
Q 013171 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT-GLAALTSL 371 (448)
Q Consensus 293 ~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~l~~~ 371 (448)
|..+..+++|+.|++++|.++... .......+|++|+++.|+++. .|.++..++.|+.|++.+|+++-. .+.+++.+
T Consensus 238 Pecly~l~~LrrLNLS~N~iteL~-~~~~~W~~lEtLNlSrNQLt~-LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL 315 (1255)
T KOG0444|consen 238 PECLYKLRNLRRLNLSGNKITELN-MTEGEWENLETLNLSRNQLTV-LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKL 315 (1255)
T ss_pred hHHHhhhhhhheeccCcCceeeee-ccHHHHhhhhhhccccchhcc-chHHHhhhHHHHHHHhccCcccccCCccchhhh
Confidence 777888999999999999887643 223455789999999998876 468888999999999999988743 46788899
Q ss_pred CCCCEEEcCCCCCChHHHHhhhCCCCCCEEeeCCCCCChhHHHhhhcCCCCCeecccCCCCCC
Q 013171 372 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 434 (448)
Q Consensus 372 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~l~ 434 (448)
-+|+++...+|.+. ..|+.+..|+.|+.|.++.|.+... |+++.-++-|+.||++.||++.
T Consensus 316 ~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLiTL-PeaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 316 IQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLITL-PEAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred hhhHHHHhhccccc-cCchhhhhhHHHHHhcccccceeec-hhhhhhcCCcceeeccCCcCcc
Confidence 99999999888764 4689999999999999999987655 8888889999999999998865
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.93 E-value=4.1e-28 Score=218.02 Aligned_cols=355 Identities=21% Similarity=0.189 Sum_probs=290.8
Q ss_pred cCCCCCCeEeccCCcccChhHHHhhcCCCCCCEEeCCCCccccHHHHHHHhCCCCCcEEecCCccccccchhhccCCCCC
Q 013171 78 KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 157 (448)
Q Consensus 78 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 157 (448)
+-+|-.|-.++++|..-.+..|.....+.+++.|++..+.. ...|..++.|++|+.|.+.+|.. ......+..++.|
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L--~~vPeEL~~lqkLEHLs~~HN~L-~~vhGELs~Lp~L 80 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKL--EQVPEELSRLQKLEHLSMAHNQL-ISVHGELSDLPRL 80 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhh--hhChHHHHHHhhhhhhhhhhhhh-Hhhhhhhccchhh
Confidence 45677888899997544466778888999999999998875 66799999999999999999753 3444567889999
Q ss_pred cEEeccCCCccCccccccCcCCCCccEEEecCCCCChHHHHhccCCCCCCeEecCCCCCchhHHHHHhcCCCCCEEEccC
Q 013171 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237 (448)
Q Consensus 158 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 237 (448)
+.+.++.++.-....|..+..+..|+.|+++.|++. +.|..+...+++-.|++++|.+..+.-..+.++..|-.|++++
T Consensus 81 Rsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~ 159 (1255)
T KOG0444|consen 81 RSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN 159 (1255)
T ss_pred HHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc
Confidence 999999876656666778889999999999999987 5567788889999999999999888777788999999999999
Q ss_pred ccCChhhHHhhhcCCCCcEEEccCCCcChhHHHHhhCCCCCcEEeccCCccC-cchhhhhhCCCCCCEeeccCCCCCcch
Q 013171 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG-DEGLVNLTGLCNLKCLELSDTQVGSSG 316 (448)
Q Consensus 238 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~ 316 (448)
|.+.. .|..+..+.+|++|.+++|.+.......+..+.+|+.|.+++.+-+ ...|..+..+.+|..++++.|.+.. .
T Consensus 160 NrLe~-LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~-v 237 (1255)
T KOG0444|consen 160 NRLEM-LPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI-V 237 (1255)
T ss_pred chhhh-cCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCc-c
Confidence 99764 5567788899999999999877555556667778888888887543 2345667788899999999998875 6
Q ss_pred hhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEccCCCCChhhHHHhhCCCCCCEEEcCCCCCCh-HHHHhhhCC
Q 013171 317 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD-SGAAYLRNF 395 (448)
Q Consensus 317 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~ 395 (448)
|+.+..+++|+.|+|++|.+++... ....-.+|++|+++.|+++.. +.++..++.|+.|.+.+|+++- -+|..++.+
T Consensus 238 Pecly~l~~LrrLNLS~N~iteL~~-~~~~W~~lEtLNlSrNQLt~L-P~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL 315 (1255)
T KOG0444|consen 238 PECLYKLRNLRRLNLSGNKITELNM-TEGEWENLETLNLSRNQLTVL-PDAVCKLTKLTKLYANNNKLTFEGIPSGIGKL 315 (1255)
T ss_pred hHHHhhhhhhheeccCcCceeeeec-cHHHHhhhhhhccccchhccc-hHHHhhhHHHHHHHhccCcccccCCccchhhh
Confidence 7888899999999999998886432 233457899999999999976 7888999999999999997653 247888999
Q ss_pred CCCCEEeeCCCCCChhHHHhhhcCCCCCeecccCCCCCC-HHHHHHH
Q 013171 396 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT-DKTLELI 441 (448)
Q Consensus 396 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~l~-~~~~~~l 441 (448)
.+|+++...+|.+.-. |+.+.+|+.|+.|.+..|.-++ +.++..+
T Consensus 316 ~~Levf~aanN~LElV-PEglcRC~kL~kL~L~~NrLiTLPeaIHlL 361 (1255)
T KOG0444|consen 316 IQLEVFHAANNKLELV-PEGLCRCVKLQKLKLDHNRLITLPEAIHLL 361 (1255)
T ss_pred hhhHHHHhhccccccC-chhhhhhHHHHHhcccccceeechhhhhhc
Confidence 9999999999987644 8999999999999999996555 4444443
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.90 E-value=3e-27 Score=201.36 Aligned_cols=363 Identities=21% Similarity=0.234 Sum_probs=207.4
Q ss_pred cCCCccEEEcccCCCChHHhHhccCCCCCCeEeccCCcccChhHHHhhcCCCCCCEEeCCCCccccHHHHHHHhCCCCCc
Q 013171 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134 (448)
Q Consensus 55 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 134 (448)
+.+.+++++++.++.. ..+++++++..++.++.+++ .+ ...|..+...+.|+.++++++.. ...+..++.+-.|+
T Consensus 66 nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n-~l-s~lp~~i~s~~~l~~l~~s~n~~--~el~~~i~~~~~l~ 140 (565)
T KOG0472|consen 66 NLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHN-KL-SELPEQIGSLISLVKLDCSSNEL--KELPDSIGRLLDLE 140 (565)
T ss_pred cccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccc-hH-hhccHHHhhhhhhhhhhccccce--eecCchHHHHhhhh
Confidence 3445666666665554 34455555555555555553 22 22344444555555555555543 22344444444444
Q ss_pred EEecCCcc----------------------ccccchhhccCCCCCcEEeccCCCccCccccccCcCCCCccEEEecCCCC
Q 013171 135 KLDLERCT----------------------RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKV 192 (448)
Q Consensus 135 ~L~l~~~~----------------------~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 192 (448)
.++..+|. .....+....+++.|++++...+ .-...|..++.+.+|..|++..|++
T Consensus 141 dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N--~L~tlP~~lg~l~~L~~LyL~~Nki 218 (565)
T KOG0472|consen 141 DLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSN--LLETLPPELGGLESLELLYLRRNKI 218 (565)
T ss_pred hhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchh--hhhcCChhhcchhhhHHHHhhhccc
Confidence 44444432 12222223333666666666542 3334566777777777777777777
Q ss_pred ChHHHHhccCCCCCCeEecCCCCCchhHHHHHhcCCCCCEEEccCccCChhhHHhhhcCCCCcEEEccCCCcChhHHHHh
Q 013171 193 TDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272 (448)
Q Consensus 193 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l 272 (448)
... | .|.+|..|..+.++.|.+.....+....++++..||+..|++.. .|..+..+.+|+.|++++|.+++ .+..+
T Consensus 219 ~~l-P-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke-~Pde~clLrsL~rLDlSNN~is~-Lp~sL 294 (565)
T KOG0472|consen 219 RFL-P-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKE-VPDEICLLRSLERLDLSNNDISS-LPYSL 294 (565)
T ss_pred ccC-C-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccccccc-CchHHHHhhhhhhhcccCCcccc-CCccc
Confidence 642 2 67888888888888887766655566688999999999998865 45667778889999999998874 45667
Q ss_pred hCCCCCcEEeccCCccCcchh-----------hhh------------------------------hCCCCCCEeeccCCC
Q 013171 273 KGLTNLESLNLDSCGIGDEGL-----------VNL------------------------------TGLCNLKCLELSDTQ 311 (448)
Q Consensus 273 ~~~~~L~~l~l~~~~~~~~~~-----------~~l------------------------------~~~~~L~~L~l~~~~ 311 (448)
+++ +|+.+.+.++.+...-- ..+ ....+.+.|++++-+
T Consensus 295 gnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~q 373 (565)
T KOG0472|consen 295 GNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQ 373 (565)
T ss_pred ccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccc
Confidence 777 78888887774321100 000 000122333333322
Q ss_pred CCcchhh-------------------------------------------------hhcCCCCCCEEeccCCCCChHHHH
Q 013171 312 VGSSGLR-------------------------------------------------HLSGLTNLESINLSFTGISDGSLR 342 (448)
Q Consensus 312 ~~~~~~~-------------------------------------------------~l~~~~~L~~L~l~~~~~~~~~~~ 342 (448)
++..+.+ .+..+++|..|++++|.+.+. |.
T Consensus 374 lt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~L-P~ 452 (565)
T KOG0472|consen 374 LTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDL-PE 452 (565)
T ss_pred cccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhc-ch
Confidence 2221111 112333444444444333221 22
Q ss_pred HHhCCCCCcEeEccCCCCChhhHHHhhCCCCCCEEEcCCCCCChHHHHhhhCCCCCCEEeeCCCCCChhHHHhhhcCCCC
Q 013171 343 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 422 (448)
Q Consensus 343 ~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 422 (448)
.++.+..|+.++++.|.+... +..+..+..++.+-.++|++....+..+.++.+|.+|++.+|.+... |..+++|.+|
T Consensus 453 e~~~lv~Lq~LnlS~NrFr~l-P~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~I-Pp~LgnmtnL 530 (565)
T KOG0472|consen 453 EMGSLVRLQTLNLSFNRFRML-PECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQI-PPILGNMTNL 530 (565)
T ss_pred hhhhhhhhheecccccccccc-hHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhC-Chhhccccce
Confidence 222333344444444433322 22222333333344444555555566688899999999999999876 7789999999
Q ss_pred CeecccCCCC
Q 013171 423 TLLNLSQNCN 432 (448)
Q Consensus 423 ~~l~l~~~~~ 432 (448)
++|+++|||.
T Consensus 531 ~hLeL~gNpf 540 (565)
T KOG0472|consen 531 RHLELDGNPF 540 (565)
T ss_pred eEEEecCCcc
Confidence 9999999963
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.89 E-value=1e-24 Score=204.42 Aligned_cols=369 Identities=22% Similarity=0.261 Sum_probs=208.8
Q ss_pred CccEEEcccCCCChHHhHhccCCCCCCeEeccCCcccChhHHHhhcCCCCCCEEeCCCCccccHHHHHHHhCCCCCcEEe
Q 013171 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 137 (448)
Q Consensus 58 ~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 137 (448)
++++|+++++.+. ..+..+...++|+.|.++.+ .+.. .+....++++|+++.|.++.. ...|..+..+++|++|+
T Consensus 46 ~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n-~i~~-vp~s~~~~~~l~~lnL~~n~l--~~lP~~~~~lknl~~Ld 120 (1081)
T KOG0618|consen 46 KLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRN-YIRS-VPSSCSNMRNLQYLNLKNNRL--QSLPASISELKNLQYLD 120 (1081)
T ss_pred eeEEeeccccccc-cCCchhhhHHHHhhcccchh-hHhh-Cchhhhhhhcchhheeccchh--hcCchhHHhhhcccccc
Confidence 3777777766554 34444555666666666653 2222 234455666666666666543 44566666666666666
Q ss_pred cCCccccccchhhccCCCC-------------------CcEEeccCCCccCccccccCcCCCCccEEEecCCCCChHHHH
Q 013171 138 LERCTRIHGGLVNLKGLMK-------------------LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA 198 (448)
Q Consensus 138 l~~~~~~~~~~~~l~~l~~-------------------L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 198 (448)
++.|..... |.-+..+.. ++++++.. +.+......++..+++ .++++.|.+......
T Consensus 121 lS~N~f~~~-Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~-n~l~~~~~~~i~~l~~--~ldLr~N~~~~~dls 196 (1081)
T KOG0618|consen 121 LSFNHFGPI-PLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRL-NVLGGSFLIDIYNLTH--QLDLRYNEMEVLDLS 196 (1081)
T ss_pred cchhccCCC-chhHHhhhHHHHHhhhcchhhhhhccccchhhhhhh-hhcccchhcchhhhhe--eeecccchhhhhhhh
Confidence 665432221 111111111 23333322 1111122222222222 244444433311110
Q ss_pred hc---------------------------------------cCCCCCCeEecCCCCCchhHHHHHhcCCCCCEEEccCcc
Q 013171 199 YL---------------------------------------KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239 (448)
Q Consensus 199 ~l---------------------------------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 239 (448)
.+ ....+|++++++.+.+... ++++..+.+|+.+....|.
T Consensus 197 ~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~l-p~wi~~~~nle~l~~n~N~ 275 (1081)
T KOG0618|consen 197 NLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNL-PEWIGACANLEALNANHNR 275 (1081)
T ss_pred hccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcc-hHHHHhcccceEecccchh
Confidence 00 1112344444444444332 2445555555555555544
Q ss_pred CChhhHHhhhcCCCCcEEEccCCCcChhHHHHhhCCCCCcEEeccCCccCcchhhhh-----------------------
Q 013171 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL----------------------- 296 (448)
Q Consensus 240 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~l----------------------- 296 (448)
+.. .+..+....+|+.+.+..|.+.. .+......++|++|++..+.+.......+
T Consensus 276 l~~-lp~ri~~~~~L~~l~~~~nel~y-ip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~ 353 (1081)
T KOG0618|consen 276 LVA-LPLRISRITSLVSLSAAYNELEY-IPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSY 353 (1081)
T ss_pred HHh-hHHHHhhhhhHHHHHhhhhhhhh-CCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccc
Confidence 422 22222233333333333333221 12222345667777776665543222111
Q ss_pred --hCCCCCCEeeccCCCCCcchhhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEccCCCCChhhHHHhhCCCCC
Q 013171 297 --TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 374 (448)
Q Consensus 297 --~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L 374 (448)
..++.|+.|.+.+|.+++..+..+...++|+.|+|++|.+.......+.+++.|++|++++|.++.. +..+.+++.|
T Consensus 354 ~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~L-p~tva~~~~L 432 (1081)
T KOG0618|consen 354 EENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTL-PDTVANLGRL 432 (1081)
T ss_pred cchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhh-hHHHHhhhhh
Confidence 0224567788888888887777888889999999999988877777788889999999999998887 4777888999
Q ss_pred CEEEcCCCCCChHHHHhhhCCCCCCEEeeCCCCCChhHHHhhhcCCCCCeecccCCCC--CCHHHHHHH
Q 013171 375 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN--LTDKTLELI 441 (448)
Q Consensus 375 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~--l~~~~~~~l 441 (448)
+.|...+|++... | .+..++.|+.+|++.|+++..........|.|++||++||++ ++....+.+
T Consensus 433 ~tL~ahsN~l~~f-P-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l 499 (1081)
T KOG0618|consen 433 HTLRAHSNQLLSF-P-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVL 499 (1081)
T ss_pred HHHhhcCCceeec-h-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccccchhhhHHh
Confidence 9999988888764 4 677899999999999998865544444448999999999974 334444433
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=6.8e-22 Score=204.87 Aligned_cols=362 Identities=21% Similarity=0.177 Sum_probs=225.7
Q ss_pred CCccEEEcccCCCC--hHHhHhccCCCCCCeEeccCCc-----ccChhHHHhhcCCC-CCCEEeCCCCccccHHHHHHHh
Q 013171 57 SSLLSVDLSGSDVT--DSGLIHLKDCSNLQSLDFNFCI-----QISDGGLEHLRGLS-NLTSLSFRRNNAITAQGMKAFA 128 (448)
Q Consensus 57 ~~l~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~-----~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~ 128 (448)
.+++.+.+.-..+. ......|..|++|+.|.+..+. ......+..+..+| .|+.|.+.++.. ...|..+
T Consensus 532 ~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l--~~lP~~f- 608 (1153)
T PLN03210 532 KKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPL--RCMPSNF- 608 (1153)
T ss_pred ceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCC--CCCCCcC-
Confidence 34555544433322 1233567788899988885431 11122334455554 588888887753 3344444
Q ss_pred CCCCCcEEecCCccccccchhhccCCCCCcEEeccCCCccCccccccCcCCCCccEEEecCCCCChHHHHhccCCCCCCe
Q 013171 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL 208 (448)
Q Consensus 129 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 208 (448)
...+|+.|++.++. +...+..+..+++|+.|+++++..+... ..+..+++|+.|++.+|......+..+..+++|+.
T Consensus 609 ~~~~L~~L~L~~s~-l~~L~~~~~~l~~Lk~L~Ls~~~~l~~i--p~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~ 685 (1153)
T PLN03210 609 RPENLVKLQMQGSK-LEKLWDGVHSLTGLRNIDLRGSKNLKEI--PDLSMATNLETLKLSDCSSLVELPSSIQYLNKLED 685 (1153)
T ss_pred CccCCcEEECcCcc-ccccccccccCCCCCEEECCCCCCcCcC--CccccCCcccEEEecCCCCccccchhhhccCCCCE
Confidence 46788888888764 4455666777888888888876655433 34677888888888887655556667788888888
Q ss_pred EecCCCCCchhHHHHHhcCCCCCEEEccCccCChhhHHhhhcCCCCcEEEccCCCcChhHHHHhhCCCCCcEEeccCCcc
Q 013171 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288 (448)
Q Consensus 209 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~ 288 (448)
|++++|......+..+ ++++|+.|++++|......+. ...+|+.|+++++.+.. .+..+ .+++|++|.+.++..
T Consensus 686 L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~~-lP~~~-~l~~L~~L~l~~~~~ 759 (1153)
T PLN03210 686 LDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIEE-FPSNL-RLENLDELILCEMKS 759 (1153)
T ss_pred EeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc---ccCCcCeeecCCCcccc-ccccc-cccccccccccccch
Confidence 8888875444334333 678888888888754332222 24578888888776653 22222 456677776655321
Q ss_pred C-------cchhhhhhCCCCCCEeeccCCCCCcchhhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEccCCCCC
Q 013171 289 G-------DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 361 (448)
Q Consensus 289 ~-------~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 361 (448)
. ...+.....+++|+.|++++|......+..+..+++|+.|++++|......|..+ .+++|+.|++++|...
T Consensus 760 ~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L 838 (1153)
T PLN03210 760 EKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRL 838 (1153)
T ss_pred hhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcc
Confidence 1 0111112234678888888776555556667778888888888774333233322 5678888888776433
Q ss_pred hhhHHHhhCCCCCCEEEcCCCCCChHHHHhhhCCCCCCEEeeCCCCCChhHHHhhhcCCCCCeecccCCCCCCH
Q 013171 362 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 435 (448)
Q Consensus 362 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~l~~ 435 (448)
...+. ...+|+.|++++|.+.. .|..+..+++|+.|++.+|.-...++..+.++++|+.+++++|+.++.
T Consensus 839 ~~~p~---~~~nL~~L~Ls~n~i~~-iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~ 908 (1153)
T PLN03210 839 RTFPD---ISTNISDLNLSRTGIEE-VPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTE 908 (1153)
T ss_pred ccccc---cccccCEeECCCCCCcc-ChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccc
Confidence 22111 23567888888887765 366677788888888888653333455566777888888888876653
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.86 E-value=1.5e-20 Score=195.01 Aligned_cols=368 Identities=18% Similarity=0.158 Sum_probs=242.8
Q ss_pred HHhcCCCccEEEcccCCC------ChHHhHhccCCC-CCCeEeccCCcccChhHHHhhcCCCCCCEEeCCCCccccHHHH
Q 013171 52 IASQGSSLLSVDLSGSDV------TDSGLIHLKDCS-NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM 124 (448)
Q Consensus 52 ~~~~~~~l~~L~l~~~~~------~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 124 (448)
....+++++.|.+..+.. ....+..+..+| +||.|.+.++ .+... |..+ ...+|++|+++++.. ...+
T Consensus 553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~-~l~~l-P~~f-~~~~L~~L~L~~s~l--~~L~ 627 (1153)
T PLN03210 553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKY-PLRCM-PSNF-RPENLVKLQMQGSKL--EKLW 627 (1153)
T ss_pred HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCC-CCCCC-CCcC-CccCCcEEECcCccc--cccc
Confidence 345688999998865432 122334444443 6999998875 33332 3334 457899999998874 3455
Q ss_pred HHHhCCCCCcEEecCCccccccchhhccCCCCCcEEeccCCCccCccccccCcCCCCccEEEecCCCCChHHHHhccCCC
Q 013171 125 KAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQ 204 (448)
Q Consensus 125 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 204 (448)
..+..+++|+.|+++++......+ .+..+++|++|++.+|..+. ..+..+..+++|+.|++++|......+..+ +++
T Consensus 628 ~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~-~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~ 704 (1153)
T PLN03210 628 DGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLV-ELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLK 704 (1153)
T ss_pred cccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCcc-ccchhhhccCCCCEEeCCCCCCcCccCCcC-CCC
Confidence 667788999999998765544443 47778999999999887665 345667888999999998864333333333 678
Q ss_pred CCCeEecCCCCCchhHHHHHhcCCCCCEEEccCccCChhhHHhhhcCCCCcEEEccCCCcC-------hhHHHHhhCCCC
Q 013171 205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT-------DECLVHLKGLTN 277 (448)
Q Consensus 205 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-------~~~~~~l~~~~~ 277 (448)
+|+.|++++|......+. ..++|+.|+++++.+... +..+ .+++|+.|.+.++... ...+.....+++
T Consensus 705 sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~~l-P~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~s 779 (1153)
T PLN03210 705 SLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIEEF-PSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPS 779 (1153)
T ss_pred CCCEEeCCCCCCcccccc---ccCCcCeeecCCCccccc-cccc-cccccccccccccchhhccccccccchhhhhcccc
Confidence 899999988855433332 246788999988876542 2222 4677887777653211 111112234578
Q ss_pred CcEEeccCCccCcchhhhhhCCCCCCEeeccCCCCCcchhhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEccC
Q 013171 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357 (448)
Q Consensus 278 L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 357 (448)
|+.|++++|......+..++++++|+.|++.+|..-...+..+ .+++|+.|++++|......+. ..++|+.|++++
T Consensus 780 L~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~---~~~nL~~L~Ls~ 855 (1153)
T PLN03210 780 LTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD---ISTNISDLNLSR 855 (1153)
T ss_pred chheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc---cccccCEeECCC
Confidence 9999999886655667778889999999998875433334333 578899999998854332222 236889999999
Q ss_pred CCCChhhHHHhhCCCCCCEEEcCCCCCChHHHHhhhCCCCCCEEeeCCCC-CChhHH----H--------hhhcCCCCCe
Q 013171 358 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG-LTDAGV----K--------HIKDLSSLTL 424 (448)
Q Consensus 358 ~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~----~--------~l~~~~~L~~ 424 (448)
|.+... +..+..+++|+.|++.+|.-....+..+..+++|+.+++++|. +..... . ....+|+...
T Consensus 856 n~i~~i-P~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~ 934 (1153)
T PLN03210 856 TGIEEV-PWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVC 934 (1153)
T ss_pred CCCccC-hHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhc
Confidence 888765 5677889999999999874433355566778899999998885 321100 0 0122344455
Q ss_pred ecccCCCCCCHHH
Q 013171 425 LNLSQNCNLTDKT 437 (448)
Q Consensus 425 l~l~~~~~l~~~~ 437 (448)
+.+.+|..+...+
T Consensus 935 l~f~nC~~L~~~a 947 (1153)
T PLN03210 935 INFINCFNLDQEA 947 (1153)
T ss_pred cccccccCCCchh
Confidence 6677776666544
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.83 E-value=1.7e-22 Score=189.65 Aligned_cols=363 Identities=23% Similarity=0.244 Sum_probs=226.4
Q ss_pred ccEEEcccCCCChHHhHhccCCCCCCeEeccCCcccChhHHHhhcCCCCCCEEeCCCCccccHHHHHHHhCCCCCcEEec
Q 013171 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 138 (448)
Q Consensus 59 l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 138 (448)
+..|++..|-+-....+.+.++-+|++|+++++. + ...+..+..+++|+.|+++.|.+ ...|.+..++.+|++|.+
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~-~-~~fp~~it~l~~L~~ln~s~n~i--~~vp~s~~~~~~l~~lnL 98 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQ-I-SSFPIQITLLSHLRQLNLSRNYI--RSVPSSCSNMRNLQYLNL 98 (1081)
T ss_pred HHhhhccccccccCchHHhhheeeeEEeeccccc-c-ccCCchhhhHHHHhhcccchhhH--hhCchhhhhhhcchhhee
Confidence 6667777665433333444455569999999863 3 33466678889999999998875 556788889999999999
Q ss_pred CCccccccchhhccCCCCCcEEeccCCCccCccccccCcCCCC-------------------ccEEEecCCCCChHHHHh
Q 013171 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN-------------------LKSLQISCSKVTDSGIAY 199 (448)
Q Consensus 139 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~-------------------L~~L~l~~~~~~~~~~~~ 199 (448)
.++ .....|..+..+.+|++|+++++.... .+..+..+.. .+.+++..+.+.+..+..
T Consensus 99 ~~n-~l~~lP~~~~~lknl~~LdlS~N~f~~--~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~ 175 (1081)
T KOG0618|consen 99 KNN-RLQSLPASISELKNLQYLDLSFNHFGP--IPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLID 175 (1081)
T ss_pred ccc-hhhcCchhHHhhhcccccccchhccCC--CchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcc
Confidence 885 567788889999999999999854322 2222222222 444444444444434434
Q ss_pred ccCCCCCCeEecCCCCCchhHHHHHhcC--------------------CCCCEEEccCccCChhhHHhhhcCCCCcEEEc
Q 013171 200 LKGLQKLTLLNLEGCPVTAACLDSLSAL--------------------GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259 (448)
Q Consensus 200 l~~~~~L~~L~l~~~~~~~~~~~~~~~~--------------------~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 259 (448)
+..+.. .+++.+|.+... .+..+ ++|+.|..+.|.+.... ......+|+.+++
T Consensus 176 i~~l~~--~ldLr~N~~~~~---dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~--~~p~p~nl~~~di 248 (1081)
T KOG0618|consen 176 IYNLTH--QLDLRYNEMEVL---DLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLD--VHPVPLNLQYLDI 248 (1081)
T ss_pred hhhhhe--eeecccchhhhh---hhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeec--cccccccceeeec
Confidence 433333 466666554311 11111 22333333333322100 0011235555666
Q ss_pred cCCCcChhHHHHhhCCCCCcEEeccCCccCc----------------------chhhhhhCCCCCCEeeccCCCCCcchh
Q 013171 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGD----------------------EGLVNLTGLCNLKCLELSDTQVGSSGL 317 (448)
Q Consensus 260 ~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~----------------------~~~~~l~~~~~L~~L~l~~~~~~~~~~ 317 (448)
+.+.++.. +.++..+.+|+.+....+.+.. ..++...+...|++|++..|.+.....
T Consensus 249 s~n~l~~l-p~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~ 327 (1081)
T KOG0618|consen 249 SHNNLSNL-PEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPD 327 (1081)
T ss_pred chhhhhcc-hHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccch
Confidence 55555533 2555555555555555554321 112233445677788887776654322
Q ss_pred hhh-------------------------cCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEccCCCCChhhHHHhhCCC
Q 013171 318 RHL-------------------------SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 372 (448)
Q Consensus 318 ~~l-------------------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~ 372 (448)
..+ ...+.|+.|.+.+|.+++.....+.++++|+.|++++|.+.......+.+++
T Consensus 328 ~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle 407 (1081)
T KOG0618|consen 328 NFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLE 407 (1081)
T ss_pred HHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchH
Confidence 111 1123566677777777777777777788888888888887777666777888
Q ss_pred CCCEEEcCCCCCChHHHHhhhCCCCCCEEeeCCCCCChhHHHhhhcCCCCCeecccCCCCCCHHHHHH
Q 013171 373 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 440 (448)
Q Consensus 373 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~l~~~~~~~ 440 (448)
.|++|+++||+++.. +..+.+++.|++|...+|++... | .+..++.|+.+|++.| +++...+..
T Consensus 408 ~LeeL~LSGNkL~~L-p~tva~~~~L~tL~ahsN~l~~f-P-e~~~l~qL~~lDlS~N-~L~~~~l~~ 471 (1081)
T KOG0618|consen 408 ELEELNLSGNKLTTL-PDTVANLGRLHTLRAHSNQLLSF-P-ELAQLPQLKVLDLSCN-NLSEVTLPE 471 (1081)
T ss_pred HhHHHhcccchhhhh-hHHHHhhhhhHHHhhcCCceeec-h-hhhhcCcceEEecccc-hhhhhhhhh
Confidence 888888888887764 57777788888888888887765 4 7788899999999888 777766654
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.83 E-value=2.6e-23 Score=177.51 Aligned_cols=338 Identities=26% Similarity=0.285 Sum_probs=187.2
Q ss_pred CCccEEEcccCCCChHHhHhccCCCCCCeEeccCCcccChhHHHhhcCCCCCCEEeCCCCccccHHHHHHHhCCCCCcEE
Q 013171 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136 (448)
Q Consensus 57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 136 (448)
.++..+++.+++++...+..+. ++.|++|+..+ +.-+..|..++.+..|.-|++..|.+ ...| .|..|..|+.|
T Consensus 160 ~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~--N~L~tlP~~lg~l~~L~~LyL~~Nki--~~lP-ef~gcs~L~El 233 (565)
T KOG0472|consen 160 SKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNS--NLLETLPPELGGLESLELLYLRRNKI--RFLP-EFPGCSLLKEL 233 (565)
T ss_pred HHHHHhhccccchhhCCHHHHH-HHHHHhcccch--hhhhcCChhhcchhhhHHHHhhhccc--ccCC-CCCccHHHHHH
Confidence 3455555555554433333332 55555555433 23333344455555555555555542 1122 44455555555
Q ss_pred ecCCccccccchhh-ccCCCCCcEEeccCCCccCccccccCcCCCCccEEEecCCCCChHHHHhccCCCCCCeEecCCCC
Q 013171 137 DLERCTRIHGGLVN-LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215 (448)
Q Consensus 137 ~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 215 (448)
.++.|. +...+.. ..+++++..|++++ +.+. ..|..+..+.+|.+|++++|.+++ .+-.++++ .|+.|.+.||.
T Consensus 234 h~g~N~-i~~lpae~~~~L~~l~vLDLRd-Nklk-e~Pde~clLrsL~rLDlSNN~is~-Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 234 HVGENQ-IEMLPAEHLKHLNSLLVLDLRD-NKLK-EVPDEICLLRSLERLDLSNNDISS-LPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred HhcccH-HHhhHHHHhcccccceeeeccc-cccc-cCchHHHHhhhhhhhcccCCcccc-CCcccccc-eeeehhhcCCc
Confidence 555432 2233322 33556666666665 3333 233444555566666666665553 23334555 56666666554
Q ss_pred CchhHHHHHh-----------------------------------------cCCCCCEEEccCccCChhhHHhhhc--CC
Q 013171 216 VTAACLDSLS-----------------------------------------ALGSLFYLNLNRCQLSDDGCEKFSK--IG 252 (448)
Q Consensus 216 ~~~~~~~~~~-----------------------------------------~~~~L~~L~l~~~~~~~~~~~~l~~--~~ 252 (448)
+.++-.+.+. ...+.+.|++++-+++....+.|.. -.
T Consensus 309 lrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~ 388 (565)
T KOG0472|consen 309 LRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSE 388 (565)
T ss_pred hHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhc
Confidence 4322111110 1112223333332222222222211 11
Q ss_pred CCcEEEccCCCcChhHHHHhhCCCCCc-EEeccCCccCcchhhhhhCCCCCCEeeccCCCCCcchhhhhcCCCCCCEEec
Q 013171 253 SLKVLNLGFNEITDECLVHLKGLTNLE-SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331 (448)
Q Consensus 253 ~L~~L~l~~~~~~~~~~~~l~~~~~L~-~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 331 (448)
-....+++.|++. ..|..+..+..+. .+.++++.+. ..+..+.++++|..|++++|-+.+ .|..+..+..|+.+++
T Consensus 389 ~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln~-LP~e~~~lv~Lq~Lnl 465 (565)
T KOG0472|consen 389 IVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLND-LPEEMGSLVRLQTLNL 465 (565)
T ss_pred ceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccchhhh-cchhhhhhhhhheecc
Confidence 2334444444433 1222222222222 2333333332 334556788999999999987665 5666677778999999
Q ss_pred cCCCCChHHHHHHhCCCCCcEeEccCCCCChhhHHHhhCCCCCCEEEcCCCCCChHHHHhhhCCCCCCEEeeCCCCCCh
Q 013171 332 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 410 (448)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 410 (448)
+.|.+.. .|..+.....++.+-.+++++....+..+.++.+|..|++.+|.+..+ |..+++|.+|++|++.+|++..
T Consensus 466 S~NrFr~-lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~I-Pp~LgnmtnL~hLeL~gNpfr~ 542 (565)
T KOG0472|consen 466 SFNRFRM-LPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQI-PPILGNMTNLRHLELDGNPFRQ 542 (565)
T ss_pred ccccccc-chHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhC-ChhhccccceeEEEecCCccCC
Confidence 9998765 345555566777777788999998888899999999999999998874 7889999999999999999874
No 13
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.82 E-value=1.3e-18 Score=157.46 Aligned_cols=254 Identities=29% Similarity=0.369 Sum_probs=150.7
Q ss_pred CCCCccEEEecCCCCChHH----HHhccCCCCCCeEecCCCCCc------hhHHHHHhcCCCCCEEEccCccCChhhHHh
Q 013171 178 GLTNLKSLQISCSKVTDSG----IAYLKGLQKLTLLNLEGCPVT------AACLDSLSALGSLFYLNLNRCQLSDDGCEK 247 (448)
Q Consensus 178 ~~~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 247 (448)
.++.|+.++++++.++... ...+...++++++.+.++.+. ...+..+..+++|+.|+++++.+....+..
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 100 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV 100 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH
Confidence 3444556666555554321 222344455666666655443 122344556677777777777765444444
Q ss_pred hhcCC---CCcEEEccCCCcChhHH----HHhhCC-CCCcEEeccCCccCcch----hhhhhCCCCCCEeeccCCCCCcc
Q 013171 248 FSKIG---SLKVLNLGFNEITDECL----VHLKGL-TNLESLNLDSCGIGDEG----LVNLTGLCNLKCLELSDTQVGSS 315 (448)
Q Consensus 248 l~~~~---~L~~L~l~~~~~~~~~~----~~l~~~-~~L~~l~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~ 315 (448)
+..+. +|+.|++++|.+.+... ..+..+ ++|+.+++++|.+.... ...+..+++|+.|++.+|.+.+.
T Consensus 101 ~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 180 (319)
T cd00116 101 LESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDA 180 (319)
T ss_pred HHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchH
Confidence 43333 37777777776653222 234455 67777777777765322 22344556777777777776643
Q ss_pred hh----hhhcCCCCCCEEeccCCCCChHHHH----HHhCCCCCcEeEccCCCCChhhHHHhh-----CCCCCCEEEcCCC
Q 013171 316 GL----RHLSGLTNLESINLSFTGISDGSLR----KLAGLSSLKSLNLDARQITDTGLAALT-----SLTGLTHLDLFGA 382 (448)
Q Consensus 316 ~~----~~l~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~l~~~~~~~l~-----~~~~L~~L~l~~~ 382 (448)
.. ..+..+++|+.|++++|.+.+.... .+..+++|++|++++|.+++.....+. ..+.|+.|++.+|
T Consensus 181 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n 260 (319)
T cd00116 181 GIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCN 260 (319)
T ss_pred HHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCC
Confidence 22 2234556788888887777654433 344567788888888877765444332 2367888888888
Q ss_pred CCChHH----HHhhhCCCCCCEEeeCCCCCChhHHHhh----hcC-CCCCeecccCCC
Q 013171 383 RITDSG----AAYLRNFKNLRSLEICGGGLTDAGVKHI----KDL-SSLTLLNLSQNC 431 (448)
Q Consensus 383 ~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~l----~~~-~~L~~l~l~~~~ 431 (448)
.+++.. ...+..+++|+.+++++|.+.+.....+ ... +.|+.+++.++|
T Consensus 261 ~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 261 DITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred CCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 776322 3344566788888888888876533333 334 678888887764
No 14
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.81 E-value=4.9e-18 Score=153.76 Aligned_cols=260 Identities=27% Similarity=0.362 Sum_probs=191.0
Q ss_pred EEecCCCCCh-HHHHhccCCCCCCeEecCCCCCchh----HHHHHhcCCCCCEEEccCccCCh------hhHHhhhcCCC
Q 013171 185 LQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAA----CLDSLSALGSLFYLNLNRCQLSD------DGCEKFSKIGS 253 (448)
Q Consensus 185 L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~------~~~~~l~~~~~ 253 (448)
|++..+.+++ .....+..+++|+.+.+.++.+... .+..+...++++.++++++.+.. ..+..+..+++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 4555555552 2334456667799999999987542 34456677889999999987762 23455667889
Q ss_pred CcEEEccCCCcChhHHHHhhCC---CCCcEEeccCCccCcchh----hhhhCC-CCCCEeeccCCCCCcch----hhhhc
Q 013171 254 LKVLNLGFNEITDECLVHLKGL---TNLESLNLDSCGIGDEGL----VNLTGL-CNLKCLELSDTQVGSSG----LRHLS 321 (448)
Q Consensus 254 L~~L~l~~~~~~~~~~~~l~~~---~~L~~l~l~~~~~~~~~~----~~l~~~-~~L~~L~l~~~~~~~~~----~~~l~ 321 (448)
|+.|+++++.+....+..+..+ ++|++|++++|.+..... ..+..+ ++|+.|++.+|.+.... ...+.
T Consensus 83 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 162 (319)
T cd00116 83 LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALR 162 (319)
T ss_pred eeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHH
Confidence 9999999998875444444444 459999999998764333 234456 89999999999987432 33456
Q ss_pred CCCCCCEEeccCCCCChHHH----HHHhCCCCCcEeEccCCCCChhhHH----HhhCCCCCCEEEcCCCCCChHHHHhh-
Q 013171 322 GLTNLESINLSFTGISDGSL----RKLAGLSSLKSLNLDARQITDTGLA----ALTSLTGLTHLDLFGARITDSGAAYL- 392 (448)
Q Consensus 322 ~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~l~~~~~~----~l~~~~~L~~L~l~~~~~~~~~~~~~- 392 (448)
.+++|++|++++|.+.+... ..+..+++|+.|++++|.+.+.... .+..+++|+.|++++|.+.+.....+
T Consensus 163 ~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~ 242 (319)
T cd00116 163 ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALA 242 (319)
T ss_pred hCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHH
Confidence 77899999999999885433 3345668999999999999865543 34578999999999999987554444
Q ss_pred hC----CCCCCEEeeCCCCCChhH----HHhhhcCCCCCeecccCCCCCCHHHHHHHHhhh
Q 013171 393 RN----FKNLRSLEICGGGLTDAG----VKHIKDLSSLTLLNLSQNCNLTDKTLELISGIL 445 (448)
Q Consensus 393 ~~----~~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~l~l~~~~~l~~~~~~~l~~~~ 445 (448)
.. .+.|+.|++.+|.+++.. ...+..+++|+.+++++| .+++.+.+.+....
T Consensus 243 ~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N-~l~~~~~~~~~~~~ 302 (319)
T cd00116 243 SALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGN-KFGEEGAQLLAESL 302 (319)
T ss_pred HHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCC-CCcHHHHHHHHHHH
Confidence 22 489999999999998433 345566789999999999 89988877776554
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.79 E-value=9.9e-21 Score=161.52 Aligned_cols=258 Identities=22% Similarity=0.180 Sum_probs=168.6
Q ss_pred HHHhcCCCccEEEcccCCCChHHhHhccCCCCCCeEeccCCcccChhHHHhhcCCCCCCEEeCCCCccccHHHHHHHhCC
Q 013171 51 VIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL 130 (448)
Q Consensus 51 ~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l 130 (448)
+...-++..++|.|..|+|+...+.+|+.+++||+|+|++| .+..+.+++|..+++|..|.+-+++.+......+|+++
T Consensus 61 VP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL 139 (498)
T KOG4237|consen 61 VPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGL 139 (498)
T ss_pred CcccCCCcceEEEeccCCcccCChhhccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhH
Confidence 44456788999999999999988999999999999999997 89999999999999999998888555677777899999
Q ss_pred CCCcEEecCCccccccchhhccCCCCCcEEeccCCCccCccccccCcCCCCccEEEecCCCCCh------------HHHH
Q 013171 131 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD------------SGIA 198 (448)
Q Consensus 131 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~------------~~~~ 198 (448)
..|+.|.+..|...-.....+..+++|..|.+.++ .........+..+..++.+.+..+.+.. ..+.
T Consensus 140 ~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~i 218 (498)
T KOG4237|consen 140 SSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPI 218 (498)
T ss_pred HHHHHHhcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchh
Confidence 99999999877655556677888999999999874 3443444466667777777766544210 0011
Q ss_pred hccCCCCCCeEecCC-------------------------C-CCchhHHHHHhcCCCCCEEEccCccCChhhHHhhhcCC
Q 013171 199 YLKGLQKLTLLNLEG-------------------------C-PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG 252 (448)
Q Consensus 199 ~l~~~~~L~~L~l~~-------------------------~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 252 (448)
+++.........+.. + .........|+.+++|+.+++++|.++..-..+|.+..
T Consensus 219 etsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a 298 (498)
T KOG4237|consen 219 ETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAA 298 (498)
T ss_pred hcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchh
Confidence 111111111111111 1 11111223355556666666666666555555555566
Q ss_pred CCcEEEccCCCcChhHHHHhhCCCCCcEEeccCCccCcchhhhhhCCCCCCEeeccCC
Q 013171 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310 (448)
Q Consensus 253 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 310 (448)
.++.|.+..|++.......|.++..|+.|++.+|+++...+.+|.....|.+|.+..|
T Consensus 299 ~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~N 356 (498)
T KOG4237|consen 299 ELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSN 356 (498)
T ss_pred hhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccC
Confidence 6666666665555444445555566666666666655555555555555555555544
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.78 E-value=1.5e-20 Score=160.51 Aligned_cols=288 Identities=22% Similarity=0.208 Sum_probs=188.3
Q ss_pred CcEEeccCCCccCccccccCcCCCCccEEEecCCCCChHHHHhccCCCCCCeEecCC-CCCchhHHHHHhcCCCCCEEEc
Q 013171 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG-CPVTAACLDSLSALGSLFYLNL 235 (448)
Q Consensus 157 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l 235 (448)
-..+++.. ++++..++..|+.+++|+.|++++|.++...+.+|.+++.+.+|.+.+ |.++......|.++..++.|.+
T Consensus 69 tveirLdq-N~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 69 TVEIRLDQ-NQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred ceEEEecc-CCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 34455555 456666677777778888888888877777777777777777777666 6666666667777777777777
Q ss_pred cCccCChhhHHhhhcCCCCcEEEccCCCcChhHHHHhhCCCCCcEEeccCCccCc------------chhhhhhCCCCCC
Q 013171 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD------------EGLVNLTGLCNLK 303 (448)
Q Consensus 236 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~------------~~~~~l~~~~~L~ 303 (448)
..+++.-....+|..++++..|.+.+|.+....-..+..+..++.+.+..+.+.. ..+..+++.....
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~ 227 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS 227 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence 7777666666677777777777777776554333355666667766666554210 0111112222222
Q ss_pred EeeccCCCCCcchhhhhc-CCCCCCEEeccCCCC-ChHHHHHHhCCCCCcEeEccCCCCChhhHHHhhCCCCCCEEEcCC
Q 013171 304 CLELSDTQVGSSGLRHLS-GLTNLESINLSFTGI-SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 381 (448)
Q Consensus 304 ~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~ 381 (448)
...+....+.......+. ....+.+--.+.|.. ..-....|..+++|++|++++|+++.....+|.....+++|.+..
T Consensus 228 p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~ 307 (498)
T KOG4237|consen 228 PYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTR 307 (498)
T ss_pred hHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCc
Confidence 222222222221111111 111111111122222 222345677888888888888888888778888888888888888
Q ss_pred CCCChHHHHhhhCCCCCCEEeeCCCCCChhHHHhhhcCCCCCeecccCCCCCCHHHHHHHHhhh
Q 013171 382 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGIL 445 (448)
Q Consensus 382 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~l~~~~~~~l~~~~ 445 (448)
|++..+....|.++..|+.|++++|+|+...|.+|....+|..|.+-.||.--+..+..+.++.
T Consensus 308 N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wl 371 (498)
T KOG4237|consen 308 NKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWL 371 (498)
T ss_pred chHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHH
Confidence 8888777777888888888888888888888888888888888888888888888777777765
No 17
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.65 E-value=2e-15 Score=127.58 Aligned_cols=197 Identities=25% Similarity=0.342 Sum_probs=137.7
Q ss_pred hhcCCCCcEEEccCCCcChhHHH----HhhCCCCCcEEeccCCccCcchhhh-------------hhCCCCCCEeeccCC
Q 013171 248 FSKIGSLKVLNLGFNEITDECLV----HLKGLTNLESLNLDSCGIGDEGLVN-------------LTGLCNLKCLELSDT 310 (448)
Q Consensus 248 l~~~~~L~~L~l~~~~~~~~~~~----~l~~~~~L~~l~l~~~~~~~~~~~~-------------l~~~~~L~~L~l~~~ 310 (448)
+..+++|+++++++|-+....+. .+.++..|++|.+.+|.++...... .+..+.|+++...+|
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN 167 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence 34455666666666655443332 2345666777777766655433322 234578899999888
Q ss_pred CCCcchh----hhhcCCCCCCEEeccCCCCChHHH----HHHhCCCCCcEeEccCCCCChhhHH----HhhCCCCCCEEE
Q 013171 311 QVGSSGL----RHLSGLTNLESINLSFTGISDGSL----RKLAGLSSLKSLNLDARQITDTGLA----ALTSLTGLTHLD 378 (448)
Q Consensus 311 ~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~l~~~~~~----~l~~~~~L~~L~ 378 (448)
.+.+.+. ..+...+.|+.+.+..|.+..... ..+..+++|+.|++.+|.++..+.. .+..+++|++|+
T Consensus 168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~ 247 (382)
T KOG1909|consen 168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELN 247 (382)
T ss_pred ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeec
Confidence 8776543 335667899999999997765433 4566889999999999988875544 445788999999
Q ss_pred cCCCCCChHHHHhh-----hCCCCCCEEeeCCCCCChhHHHh----hhcCCCCCeecccCCCCC--CHHHHHHHHhhh
Q 013171 379 LFGARITDSGAAYL-----RNFKNLRSLEICGGGLTDAGVKH----IKDLSSLTLLNLSQNCNL--TDKTLELISGIL 445 (448)
Q Consensus 379 l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~~~~----l~~~~~L~~l~l~~~~~l--~~~~~~~l~~~~ 445 (448)
+++|.+...+..++ ...|+|+++.+.+|.++...... +...|.|++|++++| .+ .+.+++.+....
T Consensus 248 l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN-~l~e~de~i~ei~~~~ 324 (382)
T KOG1909|consen 248 LGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGN-RLGEKDEGIDEIASKF 324 (382)
T ss_pred ccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcc-cccccchhHHHHHHhc
Confidence 99998887665444 55899999999999988554333 356899999999999 77 666666665543
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.63 E-value=4.9e-15 Score=143.61 Aligned_cols=83 Identities=17% Similarity=0.221 Sum_probs=36.0
Q ss_pred CCCEEeccCCCCChHHHHHHhCCCCCcEeEccCCCCChhhHHHhhCCCCCCEEEcCCCCCChHHHHhhhCCCCCCEEeeC
Q 013171 325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 404 (448)
Q Consensus 325 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 404 (448)
+|+.|++++|.+.... . ..++|+.|++++|.++.. +. .+.+|+.|++++|+++. .|..+.++++|+.|+++
T Consensus 383 ~L~~LdLs~N~Lt~LP-~---l~s~L~~LdLS~N~LssI-P~---l~~~L~~L~Ls~NqLt~-LP~sl~~L~~L~~LdLs 453 (788)
T PRK15387 383 GLKELIVSGNRLTSLP-V---LPSELKELMVSGNRLTSL-PM---LPSGLLSLSVYRNQLTR-LPESLIHLSSETTVNLE 453 (788)
T ss_pred ccceEEecCCcccCCC-C---cccCCCEEEccCCcCCCC-Cc---chhhhhhhhhccCcccc-cChHHhhccCCCeEECC
Confidence 4555555555444211 0 123455555555544432 11 11234445555555443 23444445555555555
Q ss_pred CCCCChhHHHhh
Q 013171 405 GGGLTDAGVKHI 416 (448)
Q Consensus 405 ~~~~~~~~~~~l 416 (448)
+|++++..+..+
T Consensus 454 ~N~Ls~~~~~~L 465 (788)
T PRK15387 454 GNPLSERTLQAL 465 (788)
T ss_pred CCCCCchHHHHH
Confidence 555554444433
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.60 E-value=7.4e-15 Score=142.39 Aligned_cols=266 Identities=20% Similarity=0.097 Sum_probs=149.6
Q ss_pred CCcEEecCCccccccchhhccCCCCCcEEeccCCCccCccccccCcCCCCccEEEecCCCCChHHHHhccCCCCCCeEec
Q 013171 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211 (448)
Q Consensus 132 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 211 (448)
.-..|+++.+.. ...|..+. ++|+.|++.++ .++..+ . ..++|++|++++|.++... . ..++|+.|++
T Consensus 202 ~~~~LdLs~~~L-tsLP~~l~--~~L~~L~L~~N-~Lt~LP-~---lp~~Lk~LdLs~N~LtsLP-~---lp~sL~~L~L 269 (788)
T PRK15387 202 GNAVLNVGESGL-TTLPDCLP--AHITTLVIPDN-NLTSLP-A---LPPELRTLEVSGNQLTSLP-V---LPPGLLELSI 269 (788)
T ss_pred CCcEEEcCCCCC-CcCCcchh--cCCCEEEccCC-cCCCCC-C---CCCCCcEEEecCCccCccc-C---cccccceeec
Confidence 344556655432 23333332 35666666653 233211 1 2456677777766665321 1 2356667777
Q ss_pred CCCCCchhHHHHHhcCCCCCEEEccCccCChhhHHhhhcCCCCcEEEccCCCcChhHHHHhhCCCCCcEEeccCCccCcc
Q 013171 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291 (448)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~ 291 (448)
.+|.+... +. ..++|+.|++++|.+... +. .+++|+.|++++|.+... +. ...+|+.|.+.+|.+...
T Consensus 270 s~N~L~~L-p~---lp~~L~~L~Ls~N~Lt~L-P~---~p~~L~~LdLS~N~L~~L-p~---lp~~L~~L~Ls~N~L~~L 337 (788)
T PRK15387 270 FSNPLTHL-PA---LPSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTSL 337 (788)
T ss_pred cCCchhhh-hh---chhhcCEEECcCCccccc-cc---cccccceeECCCCccccC-CC---CcccccccccccCccccc
Confidence 66655432 22 224566777777766542 11 235677777777766542 11 123566677776666432
Q ss_pred hhhhhhCCCCCCEeeccCCCCCcchhhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEccCCCCChhhHHHhhCC
Q 013171 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 371 (448)
Q Consensus 292 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~ 371 (448)
. . ...+|+.|++++|.+...+. ..++|+.|++++|.+... +. ..++|+.|++++|.++... . ..
T Consensus 338 P-~---lp~~Lq~LdLS~N~Ls~LP~----lp~~L~~L~Ls~N~L~~L-P~---l~~~L~~LdLs~N~Lt~LP-~---l~ 401 (788)
T PRK15387 338 P-T---LPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLTSL-PA---LPSGLKELIVSGNRLTSLP-V---LP 401 (788)
T ss_pred c-c---cccccceEecCCCccCCCCC----CCcccceehhhccccccC-cc---cccccceEEecCCcccCCC-C---cc
Confidence 1 1 12467777777777665321 124677777777766542 21 1246777777777776431 1 23
Q ss_pred CCCCEEEcCCCCCChHHHHhhhCCCCCCEEeeCCCCCChhHHHhhhcCCCCCeecccCCCCCCHHHHHHHHh
Q 013171 372 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 443 (448)
Q Consensus 372 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~l~~~~~~~l~~ 443 (448)
++|+.|++++|.+... |.. ..+|+.|++++|+++.. |..+.++++|+.|++++| .+++...+.+..
T Consensus 402 s~L~~LdLS~N~LssI-P~l---~~~L~~L~Ls~NqLt~L-P~sl~~L~~L~~LdLs~N-~Ls~~~~~~L~~ 467 (788)
T PRK15387 402 SELKELMVSGNRLTSL-PML---PSGLLSLSVYRNQLTRL-PESLIHLSSETTVNLEGN-PLSERTLQALRE 467 (788)
T ss_pred cCCCEEEccCCcCCCC-Ccc---hhhhhhhhhccCccccc-ChHHhhccCCCeEECCCC-CCCchHHHHHHH
Confidence 5677778877777653 322 34677777777777643 666777777778888777 566666655533
No 20
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.54 E-value=4.7e-15 Score=128.24 Aligned_cols=357 Identities=25% Similarity=0.363 Sum_probs=223.2
Q ss_pred CCchHHHHHHHHHHHhcCccCHHHHH-Hh-----cCCccceeecCCCC-CCChHHHHHHH-hcCCCccEEEcccCCC-Ch
Q 013171 1 MLPRDISQQIFNELVYSRCLTEVSLE-AF-----RDCALQDLCLGQYP-GVNDKWMDVIA-SQGSSLLSVDLSGSDV-TD 71 (448)
Q Consensus 1 ~~p~~~~~~~~~~l~~~~~~~~~~~~-~~-----~~~~~~~l~~~~~~-~~~~~~~~~~~-~~~~~l~~L~l~~~~~-~~ 71 (448)
.+|+|+.-++|..|-...+.+-.--. .| .....+++.+-..+ ++.....+.+. .....+++|.+.++.- .+
T Consensus 74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~g~VV~~~~~Rcgg~lk~LSlrG~r~v~~ 153 (483)
T KOG4341|consen 74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVDGGVVENMISRCGGFLKELSLRGCRAVGD 153 (483)
T ss_pred cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcCCCcceehHhhhhccccccccccccccCCc
Confidence 47999999998665544333222111 11 11123333332222 11111112222 2236788888887653 33
Q ss_pred HHhHhc-cCCCCCCeEeccCCcccChhHHHhh-cCCCCCCEEeCCCCccccHHHHHHH-hCCCCCcEEecCCcccccc-c
Q 013171 72 SGLIHL-KDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAF-AGLINLVKLDLERCTRIHG-G 147 (448)
Q Consensus 72 ~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~-~ 147 (448)
.....+ ..||++++|.+.+|..+++.....+ ..|+.|++|++..|..++......+ ..|++|++|+++.|..+.. .
T Consensus 154 sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~g 233 (483)
T KOG4341|consen 154 SSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNG 233 (483)
T ss_pred chhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCc
Confidence 333333 5889999999999988888888777 5788899999998876666666644 4789999999988875554 2
Q ss_pred hhh-ccCCCCCcEEeccCCCccCccccccC-cCCCCccEEEecCC-CCChHHHHhc-cCCCCCCeEecCCCCC-chhHHH
Q 013171 148 LVN-LKGLMKLESLNIKWCNCITDSDMKPL-SGLTNLKSLQISCS-KVTDSGIAYL-KGLQKLTLLNLEGCPV-TAACLD 222 (448)
Q Consensus 148 ~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~L~~L~l~~~-~~~~~~~~~l-~~~~~L~~L~l~~~~~-~~~~~~ 222 (448)
... ...+..++.+...+|...+....... ..+..+..+++..+ .+++.....+ ..+..|+.+..+++.. +.....
T Consensus 234 v~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~ 313 (483)
T KOG4341|consen 234 VQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLW 313 (483)
T ss_pred chHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHH
Confidence 222 34566777777777766654443332 24555566665444 4555443333 5577888888887743 333333
Q ss_pred HH-hcCCCCCEEEccCcc-CChhhHHhhh-cCCCCcEEEccCCCcChhH-HH-HhhCCCCCcEEeccCCc-cCcchhhhh
Q 013171 223 SL-SALGSLFYLNLNRCQ-LSDDGCEKFS-KIGSLKVLNLGFNEITDEC-LV-HLKGLTNLESLNLDSCG-IGDEGLVNL 296 (448)
Q Consensus 223 ~~-~~~~~L~~L~l~~~~-~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~-~~-~l~~~~~L~~l~l~~~~-~~~~~~~~l 296 (448)
.+ .++++|+.+.+.+++ +++.....++ +++.|+.+++..+...... .. .-.+++.|+.+.++.|. +++.+...+
T Consensus 314 aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l 393 (483)
T KOG4341|consen 314 ALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHL 393 (483)
T ss_pred HHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhh
Confidence 33 467899999998886 5554444443 5788999999877543322 22 23578899999998774 344444444
Q ss_pred h----CCCCCCEeeccCCCCC-cchhhhhcCCCCCCEEeccCC-CCChHHHHHHh-CCCCCcEeEccC
Q 013171 297 T----GLCNLKCLELSDTQVG-SSGLRHLSGLTNLESINLSFT-GISDGSLRKLA-GLSSLKSLNLDA 357 (448)
Q Consensus 297 ~----~~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~-~~~~L~~L~l~~ 357 (448)
. ....++.+.++++... +...+.+..|++|+.+++-.| .++......+. .+|+++...+-.
T Consensus 394 ~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~a 461 (483)
T KOG4341|consen 394 SSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAYFA 461 (483)
T ss_pred hhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhhcc
Confidence 3 3567899999998654 445677889999999999888 34444444443 678887766533
No 21
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.53 E-value=6.2e-16 Score=153.00 Aligned_cols=206 Identities=19% Similarity=0.161 Sum_probs=145.4
Q ss_pred chHHHHHHHHHHHhcCccCHHHHH-HhcCCccceeecCCCCCCCh-----HHHHH-----------HHhcCCCccEEEcc
Q 013171 3 PRDISQQIFNELVYSRCLTEVSLE-AFRDCALQDLCLGQYPGVND-----KWMDV-----------IASQGSSLLSVDLS 65 (448)
Q Consensus 3 p~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~-----~~~~~-----------~~~~~~~l~~L~l~ 65 (448)
.++.|+.|+.+|+++++++..... ....|.+||++.+-+-.... ..... -......+|++.+.
T Consensus 452 ~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~ 531 (889)
T KOG4658|consen 452 AEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLM 531 (889)
T ss_pred hhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEe
Confidence 468999999999999999887653 56678889887652211111 00000 01123467788887
Q ss_pred cCCCChHHhHhccCCCCCCeEeccCCcc-cChhHHHhhcCCCCCCEEeCCCCccccHHHHHHHhCCCCCcEEecCCcccc
Q 013171 66 GSDVTDSGLIHLKDCSNLQSLDFNFCIQ-ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI 144 (448)
Q Consensus 66 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 144 (448)
++++... ..-..+++|++|-+..+.. +.......|..+|.|++||+++|.. ...+|..++.+-+||+|+++. +.+
T Consensus 532 ~~~~~~~--~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~-l~~LP~~I~~Li~LryL~L~~-t~I 607 (889)
T KOG4658|consen 532 NNKIEHI--AGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSS-LSKLPSSIGELVHLRYLDLSD-TGI 607 (889)
T ss_pred ccchhhc--cCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCc-cCcCChHHhhhhhhhcccccC-CCc
Confidence 7765432 2234677899999988642 6677777789999999999999864 466799999999999999998 457
Q ss_pred ccchhhccCCCCCcEEeccCCCccCccccccCcCCCCccEEEecCCC--CChHHHHhccCCCCCCeEecCC
Q 013171 145 HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK--VTDSGIAYLKGLQKLTLLNLEG 213 (448)
Q Consensus 145 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~l~~~~~L~~L~l~~ 213 (448)
...|..+++++.|.+|++..+...... +.....+++|++|.+.... ........+..+.+|+.+.+..
T Consensus 608 ~~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 608 SHLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI 677 (889)
T ss_pred cccchHHHHHHhhheeccccccccccc-cchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence 788999999999999999886655533 4455568999999987543 2223344455666666666543
No 22
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.47 E-value=6.9e-13 Score=112.43 Aligned_cols=219 Identities=22% Similarity=0.308 Sum_probs=154.5
Q ss_pred cCCCCCEEEccCccCChhhHH----hhhcCCCCcEEEccCC---CcChhH-------HHHhhCCCCCcEEeccCCccCcc
Q 013171 226 ALGSLFYLNLNRCQLSDDGCE----KFSKIGSLKVLNLGFN---EITDEC-------LVHLKGLTNLESLNLDSCGIGDE 291 (448)
Q Consensus 226 ~~~~L~~L~l~~~~~~~~~~~----~l~~~~~L~~L~l~~~---~~~~~~-------~~~l~~~~~L~~l~l~~~~~~~~ 291 (448)
.+..++.+++++|.+...... .+.+.+.|+..++++- ...... ...+..+|+|+++++++|.++..
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 345555555555555433322 2334455555555432 111122 23455778999999999998876
Q ss_pred hhhhh----hCCCCCCEeeccCCCCCcchhhh-------------hcCCCCCCEEeccCCCCChHHH----HHHhCCCCC
Q 013171 292 GLVNL----TGLCNLKCLELSDTQVGSSGLRH-------------LSGLTNLESINLSFTGISDGSL----RKLAGLSSL 350 (448)
Q Consensus 292 ~~~~l----~~~~~L~~L~l~~~~~~~~~~~~-------------l~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L 350 (448)
+++.| .++..|+.|.+.+|.++...-.. ...-+.|+.+...+|.+.+.+. ..+...+.|
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~l 187 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTL 187 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcccc
Confidence 66554 46889999999999887544322 2456789999999997766443 445567999
Q ss_pred cEeEccCCCCChhhH----HHhhCCCCCCEEEcCCCCCChHH----HHhhhCCCCCCEEeeCCCCCChhHHHhh-----h
Q 013171 351 KSLNLDARQITDTGL----AALTSLTGLTHLDLFGARITDSG----AAYLRNFKNLRSLEICGGGLTDAGVKHI-----K 417 (448)
Q Consensus 351 ~~L~l~~~~l~~~~~----~~l~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~l-----~ 417 (448)
+.+.+..|.+...+. .++..+++|+.|++++|-++..+ ...+..+++|+.|.+++|.+...+..++ .
T Consensus 188 eevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~ 267 (382)
T KOG1909|consen 188 EEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKE 267 (382)
T ss_pred ceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhc
Confidence 999999998875443 46678999999999999888655 4455788999999999999876555444 3
Q ss_pred cCCCCCeecccCCCCCCHHHHHHHHhhh
Q 013171 418 DLSSLTLLNLSQNCNLTDKTLELISGIL 445 (448)
Q Consensus 418 ~~~~L~~l~l~~~~~l~~~~~~~l~~~~ 445 (448)
..|+|+.+.+.+| .++..+...+....
T Consensus 268 ~~p~L~vl~l~gN-eIt~da~~~la~~~ 294 (382)
T KOG1909|consen 268 SAPSLEVLELAGN-EITRDAALALAACM 294 (382)
T ss_pred cCCCCceeccCcc-hhHHHHHHHHHHHH
Confidence 5899999999999 78877776665443
No 23
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.47 E-value=4.6e-13 Score=130.79 Aligned_cols=232 Identities=16% Similarity=0.165 Sum_probs=99.1
Q ss_pred CccEEEecCCCCChHHHHhccCCCCCCeEecCCCCCchhHHHHHhcCCCCCEEEccCccCChhhHHhhhcCCCCcEEEcc
Q 013171 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 260 (448)
Q Consensus 181 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 260 (448)
.|+.|++++|.++.... .+ .++|++|++++|.+... +..+ .++|+.|++++|.+... +..+. .+|+.|+++
T Consensus 200 ~L~~L~Ls~N~LtsLP~-~l--~~nL~~L~Ls~N~LtsL-P~~l--~~~L~~L~Ls~N~L~~L-P~~l~--s~L~~L~Ls 270 (754)
T PRK15370 200 QITTLILDNNELKSLPE-NL--QGNIKTLYANSNQLTSI-PATL--PDTIQEMELSINRITEL-PERLP--SALQSLDLF 270 (754)
T ss_pred CCcEEEecCCCCCcCCh-hh--ccCCCEEECCCCccccC-Chhh--hccccEEECcCCccCcC-ChhHh--CCCCEEECc
Confidence 44555555554443211 11 13455555555544332 2211 12455555555554422 22221 245555555
Q ss_pred CCCcChhHHHHhhCCCCCcEEeccCCccCcchhhhhhCCCCCCEeeccCCCCCcchhhhhcCCCCCCEEeccCCCCChHH
Q 013171 261 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 340 (448)
Q Consensus 261 ~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 340 (448)
+|.+.. .+..+ .++|+.|++++|.+.... ..+ .++|+.|++.+|.+... +..+ .++|+.|++++|.+...
T Consensus 271 ~N~L~~-LP~~l--~~sL~~L~Ls~N~Lt~LP-~~l--p~sL~~L~Ls~N~Lt~L-P~~l--~~sL~~L~Ls~N~Lt~L- 340 (754)
T PRK15370 271 HNKISC-LPENL--PEELRYLSVYDNSIRTLP-AHL--PSGITHLNVQSNSLTAL-PETL--PPGLKTLEAGENALTSL- 340 (754)
T ss_pred CCccCc-ccccc--CCCCcEEECCCCccccCc-ccc--hhhHHHHHhcCCccccC-Cccc--cccceeccccCCccccC-
Confidence 554442 12211 134555555555444221 111 12455555555554432 1111 14555555555554432
Q ss_pred HHHHhCCCCCcEeEccCCCCChhhHHHhhCCCCCCEEEcCCCCCChHHHHhhhCCCCCCEEeeCCCCCChh---HHHhhh
Q 013171 341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA---GVKHIK 417 (448)
Q Consensus 341 ~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~l~ 417 (448)
+..+ .++|+.|++++|.++.. +..+ .++|+.|++++|.++.. |..+ .+.|+.|++++|++... .+....
T Consensus 341 P~~l--~~sL~~L~Ls~N~L~~L-P~~l--p~~L~~LdLs~N~Lt~L-P~~l--~~sL~~LdLs~N~L~~LP~sl~~~~~ 412 (754)
T PRK15370 341 PASL--PPELQVLDVSKNQITVL-PETL--PPTITTLDVSRNALTNL-PENL--PAALQIMQASRNNLVRLPESLPHFRG 412 (754)
T ss_pred Chhh--cCcccEEECCCCCCCcC-Chhh--cCCcCEEECCCCcCCCC-CHhH--HHHHHHHhhccCCcccCchhHHHHhh
Confidence 1222 14555555555555432 2222 24555566655555543 2222 12455555555555432 122223
Q ss_pred cCCCCCeecccCCCCCCHHHHHH
Q 013171 418 DLSSLTLLNLSQNCNLTDKTLEL 440 (448)
Q Consensus 418 ~~~~L~~l~l~~~~~l~~~~~~~ 440 (448)
.++.+..+++.+| .++...++.
T Consensus 413 ~~~~l~~L~L~~N-pls~~tl~~ 434 (754)
T PRK15370 413 EGPQPTRIIVEYN-PFSERTIQN 434 (754)
T ss_pred cCCCccEEEeeCC-CccHHHHHH
Confidence 3455555666555 344444443
No 24
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.37 E-value=5.3e-12 Score=123.47 Aligned_cols=249 Identities=17% Similarity=0.136 Sum_probs=139.5
Q ss_pred CCcEEecCCccccccchhhccCCCCCcEEeccCCCccCccccccCcCCCCccEEEecCCCCChHHHHhccCCCCCCeEec
Q 013171 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211 (448)
Q Consensus 132 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 211 (448)
+...|+++++. ....|..+ .+.|+.|++++| .++.. +..+ .++|++|++++|.++.. +..+ .++|+.|++
T Consensus 179 ~~~~L~L~~~~-LtsLP~~I--p~~L~~L~Ls~N-~LtsL-P~~l--~~nL~~L~Ls~N~LtsL-P~~l--~~~L~~L~L 248 (754)
T PRK15370 179 NKTELRLKILG-LTTIPACI--PEQITTLILDNN-ELKSL-PENL--QGNIKTLYANSNQLTSI-PATL--PDTIQEMEL 248 (754)
T ss_pred CceEEEeCCCC-cCcCCccc--ccCCcEEEecCC-CCCcC-Chhh--ccCCCEEECCCCccccC-Chhh--hccccEEEC
Confidence 45566666532 22233322 245677777664 33322 2222 24677777777766532 2222 235777777
Q ss_pred CCCCCchhHHHHHhcCCCCCEEEccCccCChhhHHhhhcCCCCcEEEccCCCcChhHHHHhhCCCCCcEEeccCCccCcc
Q 013171 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291 (448)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~ 291 (448)
++|.+... +..+. .+|+.|++++|.+.. .+..+ .++|+.|++++|.++.. +..+ .++|+.|++++|.+...
T Consensus 249 s~N~L~~L-P~~l~--s~L~~L~Ls~N~L~~-LP~~l--~~sL~~L~Ls~N~Lt~L-P~~l--p~sL~~L~Ls~N~Lt~L 319 (754)
T PRK15370 249 SINRITEL-PERLP--SALQSLDLFHNKISC-LPENL--PEELRYLSVYDNSIRTL-PAHL--PSGITHLNVQSNSLTAL 319 (754)
T ss_pred cCCccCcC-ChhHh--CCCCEEECcCCccCc-ccccc--CCCCcEEECCCCccccC-cccc--hhhHHHHHhcCCccccC
Confidence 77766543 33332 467777777777653 23222 24677777777766542 2211 13567777777766532
Q ss_pred hhhhhhCCCCCCEeeccCCCCCcchhhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEccCCCCChhhHHHhhCC
Q 013171 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 371 (448)
Q Consensus 292 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~ 371 (448)
. ..+ .++|+.|.+.+|.+... +..+ +++|+.|++++|.+... +..+ .++|+.|++++|.++.. +..+.
T Consensus 320 P-~~l--~~sL~~L~Ls~N~Lt~L-P~~l--~~sL~~L~Ls~N~L~~L-P~~l--p~~L~~LdLs~N~Lt~L-P~~l~-- 387 (754)
T PRK15370 320 P-ETL--PPGLKTLEAGENALTSL-PASL--PPELQVLDVSKNQITVL-PETL--PPTITTLDVSRNALTNL-PENLP-- 387 (754)
T ss_pred C-ccc--cccceeccccCCccccC-Chhh--cCcccEEECCCCCCCcC-Chhh--cCCcCEEECCCCcCCCC-CHhHH--
Confidence 2 111 25677777777766552 2222 25777888877776642 2223 25777888877777654 22222
Q ss_pred CCCCEEEcCCCCCChH---HHHhhhCCCCCCEEeeCCCCCChh
Q 013171 372 TGLTHLDLFGARITDS---GAAYLRNFKNLRSLEICGGGLTDA 411 (448)
Q Consensus 372 ~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~ 411 (448)
..|+.|++++|++... .+.....++.+..|++.+|++...
T Consensus 388 ~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~~ 430 (754)
T PRK15370 388 AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFSER 430 (754)
T ss_pred HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCccHH
Confidence 2577777777776642 233334457777788888777643
No 25
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.32 E-value=1.1e-12 Score=113.72 Aligned_cols=300 Identities=30% Similarity=0.430 Sum_probs=214.6
Q ss_pred cceeecCCCCCCChHHHHHHHhcCCCccEEEcccC-CCChHHhHhcc-CCCCCCeEeccCCcccChhHHHhh-cCCCCCC
Q 013171 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS-DVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEHL-RGLSNLT 109 (448)
Q Consensus 33 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~-~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~l-~~~~~L~ 109 (448)
++++.+..+..+.+.-...+..++|+++.|.+.++ ++++.....++ .|++|+.|++..|..+++.....+ ..|++|+
T Consensus 140 lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~ 219 (483)
T KOG4341|consen 140 LKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLK 219 (483)
T ss_pred cccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHH
Confidence 88999999999999999999999999999999976 57777766664 899999999999988888888855 6899999
Q ss_pred EEeCCCCccccHHHHHHH-hCCCCCcEEecCCccccccch--hhccCCCCCcEEeccCCCccCccccccCc-CCCCccEE
Q 013171 110 SLSFRRNNAITAQGMKAF-AGLINLVKLDLERCTRIHGGL--VNLKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSL 185 (448)
Q Consensus 110 ~L~l~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~--~~l~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L 185 (448)
||++++|..+.+.....+ .++..++.+...+|....... ..-..+..+..+++..|+.+++.....+. .+..|+.+
T Consensus 220 ~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l 299 (483)
T KOG4341|consen 220 YLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVL 299 (483)
T ss_pred HhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhh
Confidence 999999987666555555 477788888777775443322 22345677788888888888877766554 67889999
Q ss_pred EecCC-CCChHHHHhc-cCCCCCCeEecCCCC-CchhHHHHH-hcCCCCCEEEccCccCChhh--HHhhhcCCCCcEEEc
Q 013171 186 QISCS-KVTDSGIAYL-KGLQKLTLLNLEGCP-VTAACLDSL-SALGSLFYLNLNRCQLSDDG--CEKFSKIGSLKVLNL 259 (448)
Q Consensus 186 ~l~~~-~~~~~~~~~l-~~~~~L~~L~l~~~~-~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l 259 (448)
..+++ .+.+.....+ .++++|+.+.+.+++ ++......+ .+++.|+.+++..+....+. ...-.+++.|+.+.+
T Consensus 300 ~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lsl 379 (483)
T KOG4341|consen 300 CYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSL 379 (483)
T ss_pred cccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCCh
Confidence 98875 5555555555 567899999999885 333222233 36788999998887633222 222246788999999
Q ss_pred cCCC-cChhHHHHh----hCCCCCcEEeccCCcc-CcchhhhhhCCCCCCEeeccCCCCC-cchhhh-hcCCCCCCEEec
Q 013171 260 GFNE-ITDECLVHL----KGLTNLESLNLDSCGI-GDEGLVNLTGLCNLKCLELSDTQVG-SSGLRH-LSGLTNLESINL 331 (448)
Q Consensus 260 ~~~~-~~~~~~~~l----~~~~~L~~l~l~~~~~-~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~-l~~~~~L~~L~l 331 (448)
+.|. +++.....+ ..+..+..+.++++.. ++.....+..+++|+.+++.+++.. ...... -.++|+++...+
T Consensus 380 shce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 380 SHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred hhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence 8764 333323333 2456788888888864 3445566778889999998887543 222222 256777777655
Q ss_pred c
Q 013171 332 S 332 (448)
Q Consensus 332 ~ 332 (448)
.
T Consensus 460 ~ 460 (483)
T KOG4341|consen 460 F 460 (483)
T ss_pred c
Confidence 4
No 26
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=8.4e-12 Score=103.65 Aligned_cols=185 Identities=24% Similarity=0.262 Sum_probs=135.1
Q ss_pred hcCCCccEEEcccCCCChHHhH-hccCCCCCCeEeccCCcccChhHHHhhcCCCCCCEEeCCCCccccHHHH-HHHhCCC
Q 013171 54 SQGSSLLSVDLSGSDVTDSGLI-HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGM-KAFAGLI 131 (448)
Q Consensus 54 ~~~~~l~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~l~ 131 (448)
..-++++.+|++...++..... .++.|.+|+.|.++|. .+.+.....+++-.+|+.|+++.|..++.... -.+.+|.
T Consensus 182 ~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~-~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs 260 (419)
T KOG2120|consen 182 PFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGL-RLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCS 260 (419)
T ss_pred hhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhcccccc-ccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhh
Confidence 3446799999998888866544 4578999999999996 78888888888889999999999876655444 3557899
Q ss_pred CCcEEecCCccccccchhhc--cCCCCCcEEeccCCCcc-CccccccC-cCCCCccEEEecCC-CCChHHHHhccCCCCC
Q 013171 132 NLVKLDLERCTRIHGGLVNL--KGLMKLESLNIKWCNCI-TDSDMKPL-SGLTNLKSLQISCS-KVTDSGIAYLKGLQKL 206 (448)
Q Consensus 132 ~L~~L~l~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~-~~~~~~~~-~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L 206 (448)
.|..|+++-|.........+ +--++|+.|+++++..- .......+ ..+++|..|+++.+ .++......+..++.|
T Consensus 261 ~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L 340 (419)
T KOG2120|consen 261 RLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYL 340 (419)
T ss_pred hHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchh
Confidence 99999999886555443322 23477888888876332 22222223 47899999999976 5666666778888999
Q ss_pred CeEecCCCCCc-hhHHHHHhcCCCCCEEEccCcc
Q 013171 207 TLLNLEGCPVT-AACLDSLSALGSLFYLNLNRCQ 239 (448)
Q Consensus 207 ~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~ 239 (448)
+++.++.|... ....-.+...|.|.+|++.++-
T Consensus 341 ~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 341 QHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred eeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 99999988432 2222345677999999998864
No 27
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.24 E-value=6.3e-14 Score=106.52 Aligned_cols=188 Identities=20% Similarity=0.235 Sum_probs=100.2
Q ss_pred cCCCCCEEEccCccCChhhHHhhhcCCCCcEEEccCCCcChhHHHHhhCCCCCcEEeccCCccCcchhhhhhCCCCCCEe
Q 013171 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 305 (448)
Q Consensus 226 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L 305 (448)
++..++.|.+++|.++.. +..++.+.+|+.|++.+|++. ..+..++++++|+.+++.-+++. ..+..|+.+|.|+.|
T Consensus 31 ~~s~ITrLtLSHNKl~~v-ppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVV-PPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhcccCceeec-CCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 445566666677666543 334556666777777666665 33455666666666666655443 344556666666666
Q ss_pred eccCCCCCcc-hhhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEccCCCCChhhHHHhhCCCCCCEEEcCCCCC
Q 013171 306 ELSDTQVGSS-GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 384 (448)
Q Consensus 306 ~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~ 384 (448)
++..|.+.+. .+..|..+.. |+-|++++|.+.-. +..++.+.+|+.|.+.+|.+
T Consensus 108 dltynnl~e~~lpgnff~m~t------------------------lralyl~dndfe~l-p~dvg~lt~lqil~lrdndl 162 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTT------------------------LRALYLGDNDFEIL-PPDVGKLTNLQILSLRDNDL 162 (264)
T ss_pred hccccccccccCCcchhHHHH------------------------HHHHHhcCCCcccC-ChhhhhhcceeEEeeccCch
Confidence 6665554432 1222233334 44444444444332 34445555555555555554
Q ss_pred ChHHHHhhhCCCCCCEEeeCCCCCChhHHHhhhcC---CCCCeecccCCCCCCHHHHHHHHh
Q 013171 385 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL---SSLTLLNLSQNCNLTDKTLELISG 443 (448)
Q Consensus 385 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~---~~L~~l~l~~~~~l~~~~~~~l~~ 443 (448)
.+ .|..++.+..|++|++.+|.++...| .++.+ -+=....+..||.+..++.+...+
T Consensus 163 l~-lpkeig~lt~lrelhiqgnrl~vlpp-el~~l~l~~~k~v~r~E~NPwv~pIaeQf~lG 222 (264)
T KOG0617|consen 163 LS-LPKEIGDLTRLRELHIQGNRLTVLPP-ELANLDLVGNKQVMRMEENPWVNPIAEQFLLG 222 (264)
T ss_pred hh-CcHHHHHHHHHHHHhcccceeeecCh-hhhhhhhhhhHHHHhhhhCCCCChHHHHHHhh
Confidence 43 24555555666666666665554422 22221 222344566778887777666543
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=4.4e-12 Score=110.73 Aligned_cols=207 Identities=20% Similarity=0.154 Sum_probs=103.9
Q ss_pred cceeecCCCCCCChHHHHHHHhcCCCccEEEcccCCCCh--HHhHhccCCCCCCeEeccCCcccChhH-HHhhcCCCCCC
Q 013171 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTD--SGLIHLKDCSNLQSLDFNFCIQISDGG-LEHLRGLSNLT 109 (448)
Q Consensus 33 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~l~~~~~L~ 109 (448)
++++.++.++ +...........+++++.||++.|-+.. .+......+|+|+.|+++.|. +.... ...-..+++|+
T Consensus 123 L~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nr-l~~~~~s~~~~~l~~lK 200 (505)
T KOG3207|consen 123 LREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNR-LSNFISSNTTLLLSHLK 200 (505)
T ss_pred hhheeecCcc-ccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccc-ccCCccccchhhhhhhh
Confidence 5566665553 1111111344566777777777664432 122333466777777776653 22111 11112456677
Q ss_pred EEeCCCCccccHHHHHHHhCCCCCcEEecCCccccccchhhccCCCCCcEEeccCCCccCccccccCcCCCCccEEEecC
Q 013171 110 SLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC 189 (448)
Q Consensus 110 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 189 (448)
.|.+++|+............+|+|+.|.+..|..+.........+..|+.|++++++............+++|+.|+++.
T Consensus 201 ~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~ 280 (505)
T KOG3207|consen 201 QLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSS 280 (505)
T ss_pred eEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccc
Confidence 77777776543333344456777777777665433333333344566667777665555544344455666666666666
Q ss_pred CCCChHHH------HhccCCCCCCeEecCCCCCch-hHHHHHhcCCCCCEEEccCccCC
Q 013171 190 SKVTDSGI------AYLKGLQKLTLLNLEGCPVTA-ACLDSLSALGSLFYLNLNRCQLS 241 (448)
Q Consensus 190 ~~~~~~~~------~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~ 241 (448)
+.+.+... +....+++|+.|.+..|.+.. .....+..+++|+.|.+..+.+.
T Consensus 281 tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 281 TGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred cCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 55543211 112334555555555554422 11222334445555554444443
No 29
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.17 E-value=2.4e-13 Score=103.42 Aligned_cols=155 Identities=18% Similarity=0.175 Sum_probs=86.5
Q ss_pred CCCCeEeccCCcccChhHHHhhcCCCCCCEEeCCCCccccHHHHHHHhCCCCCcEEecCCccccccchhhccCCCCCcEE
Q 013171 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 160 (448)
Q Consensus 81 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 160 (448)
.++..|.++++ .++.. +..+..+.+|+.|+++++++ ...|..++.+++|+.|+++-+ .....+..|+.+|.|+.|
T Consensus 33 s~ITrLtLSHN-Kl~~v-ppnia~l~nlevln~~nnqi--e~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~levl 107 (264)
T KOG0617|consen 33 SNITRLTLSHN-KLTVV-PPNIAELKNLEVLNLSNNQI--EELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEVL 107 (264)
T ss_pred hhhhhhhcccC-ceeec-CCcHHHhhhhhhhhcccchh--hhcChhhhhchhhhheecchh-hhhcCccccCCCchhhhh
Confidence 34444444443 22222 23344455555555555543 344555556666666666543 234455556666666666
Q ss_pred eccCCCccCccccccCcCCCCccEEEecCCCCChHHHHhccCCCCCCeEecCCCCCchhHHHHHhcCCCCCEEEccCccC
Q 013171 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240 (448)
Q Consensus 161 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 240 (448)
++.+++.-....+..|..++.|+-|.++.|.+. ..+..++.+++|+.|.+.++.+... +..++.+.+|++|.+.+|.+
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~l-pkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLSL-PKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhhC-cHHHHHHHHHHHHhccccee
Confidence 666655444455556666666666666666655 3444556666666666666655442 55566666666666666665
Q ss_pred Ch
Q 013171 241 SD 242 (448)
Q Consensus 241 ~~ 242 (448)
+.
T Consensus 186 ~v 187 (264)
T KOG0617|consen 186 TV 187 (264)
T ss_pred ee
Confidence 43
No 30
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=1.8e-11 Score=101.66 Aligned_cols=179 Identities=21% Similarity=0.197 Sum_probs=93.6
Q ss_pred CCCCEEEccCccCChhhHH-hhhcCCCCcEEEccCCCcChhHHHHhhCCCCCcEEeccCCc-cCcchhh-hhhCCCCCCE
Q 013171 228 GSLFYLNLNRCQLSDDGCE-KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG-IGDEGLV-NLTGLCNLKC 304 (448)
Q Consensus 228 ~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~-~~~~~~~-~l~~~~~L~~ 304 (448)
..|+++|++...++..... .++.+.+|+.|.+.+..+.+.....++.-.+|+.++++.+. ++..... .+.++..|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 3577777777666544332 24556677777777777766666666666677777776653 3222222 2345666666
Q ss_pred eeccCCCCCcchhhhh-c-CCCCCCEEeccCC--CCChHHHHH-HhCCCCCcEeEccCC-CCChhhHHHhhCCCCCCEEE
Q 013171 305 LELSDTQVGSSGLRHL-S-GLTNLESINLSFT--GISDGSLRK-LAGLSSLKSLNLDAR-QITDTGLAALTSLTGLTHLD 378 (448)
Q Consensus 305 L~l~~~~~~~~~~~~l-~-~~~~L~~L~l~~~--~~~~~~~~~-~~~~~~L~~L~l~~~-~l~~~~~~~l~~~~~L~~L~ 378 (448)
|+++.|.+.......+ . --++|+.|+++++ .+....... ...+|+|.+|++++| .++......+..++-|+.|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 6666665443222111 1 1245666666655 222222222 234666666666654 33443344555666666666
Q ss_pred cCCCCCC-hHHHHhhhCCCCCCEEeeCCC
Q 013171 379 LFGARIT-DSGAAYLRNFKNLRSLEICGG 406 (448)
Q Consensus 379 l~~~~~~-~~~~~~~~~~~~L~~L~l~~~ 406 (448)
++.|..- ....-.+...|.|.+|++.+|
T Consensus 345 lsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 345 LSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 6666321 111111245566666666554
No 31
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=99.14 E-value=2.5e-10 Score=93.80 Aligned_cols=191 Identities=19% Similarity=0.194 Sum_probs=123.5
Q ss_pred HhhhcCCCCcEEEccCCCcChhHH----HHhhCCCCCcEEeccCCccCcchhhhh-------------hCCCCCCEeecc
Q 013171 246 EKFSKIGSLKVLNLGFNEITDECL----VHLKGLTNLESLNLDSCGIGDEGLVNL-------------TGLCNLKCLELS 308 (448)
Q Consensus 246 ~~l~~~~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~l~l~~~~~~~~~~~~l-------------~~~~~L~~L~l~ 308 (448)
.++.+||+|+..+++.|.+....+ +.+++...|++|.+.+|.++......+ ..-|.|+++...
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg 165 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG 165 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence 344456666666666665543322 234555667777777765543322211 234788888888
Q ss_pred CCCCCcchhh----hhcCCCCCCEEeccCCCCChHHHHH-----HhCCCCCcEeEccCCCCChhhHH----HhhCCCCCC
Q 013171 309 DTQVGSSGLR----HLSGLTNLESINLSFTGISDGSLRK-----LAGLSSLKSLNLDARQITDTGLA----ALTSLTGLT 375 (448)
Q Consensus 309 ~~~~~~~~~~----~l~~~~~L~~L~l~~~~~~~~~~~~-----~~~~~~L~~L~l~~~~l~~~~~~----~l~~~~~L~ 375 (448)
.|++...... .+..-.+|+.+.+..|.+...+... +..+.+|+.|++.+|.++..+.. ++...+.|+
T Consensus 166 rNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lr 245 (388)
T COG5238 166 RNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLR 245 (388)
T ss_pred cchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhh
Confidence 8877553322 2233368999999999887654333 23578999999999988866544 345678899
Q ss_pred EEEcCCCCCChHHHHhh------hCCCCCCEEeeCCCCCChh-----HHHhh--hcCCCCCeecccCCCCCCHHH
Q 013171 376 HLDLFGARITDSGAAYL------RNFKNLRSLEICGGGLTDA-----GVKHI--KDLSSLTLLNLSQNCNLTDKT 437 (448)
Q Consensus 376 ~L~l~~~~~~~~~~~~~------~~~~~L~~L~l~~~~~~~~-----~~~~l--~~~~~L~~l~l~~~~~l~~~~ 437 (448)
+|.+.+|-++..+...+ ...|+|..|.+.+|.+.+. ....+ ..+|-|..+.+.|| .+.+.+
T Consensus 246 EL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngN-r~~E~~ 319 (388)
T COG5238 246 ELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGN-RIKELA 319 (388)
T ss_pred hccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccC-cchhHH
Confidence 99999997776544332 3468999999998865422 12233 46888999999998 565443
No 32
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.12 E-value=2.2e-11 Score=121.16 Aligned_cols=133 Identities=19% Similarity=0.174 Sum_probs=100.3
Q ss_pred cCCCccEEEcccCC--CChHHhHhccCCCCCCeEeccCCcccChhHHHhhcCCCCCCEEeCCCCccccHHHHHHHhCCCC
Q 013171 55 QGSSLLSVDLSGSD--VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLIN 132 (448)
Q Consensus 55 ~~~~l~~L~l~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~ 132 (448)
.++.+++|-+..+. +.......|..+|.|++|+|++|..+ ...|..++.+-+||||+++++.. ..+|..++++..
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l-~~LP~~I~~Li~LryL~L~~t~I--~~LP~~l~~Lk~ 619 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSL-SKLPSSIGELVHLRYLDLSDTGI--SHLPSGLGNLKK 619 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCcc-CcCChHHhhhhhhhcccccCCCc--cccchHHHHHHh
Confidence 55689999999875 44444455789999999999997544 44588899999999999999985 578999999999
Q ss_pred CcEEecCCccccccchhhccCCCCCcEEeccCCC-ccCccccccCcCCCCccEEEecCC
Q 013171 133 LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCN-CITDSDMKPLSGLTNLKSLQISCS 190 (448)
Q Consensus 133 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~ 190 (448)
|.+|++..+......+.....+++|++|.+.... ..+......+..+.+|+.+.+...
T Consensus 620 L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~ 678 (889)
T KOG4658|consen 620 LIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITIS 678 (889)
T ss_pred hheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecc
Confidence 9999999866555554555669999999997643 222333445566777777776543
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=2.7e-11 Score=105.95 Aligned_cols=209 Identities=24% Similarity=0.254 Sum_probs=123.9
Q ss_pred cCCCCCCeEecCCCCCchhHH-HHHhcCCCCCEEEccCccCCh--hhHHhhhcCCCCcEEEccCCCcChhHHH-HhhCCC
Q 013171 201 KGLQKLTLLNLEGCPVTAACL-DSLSALGSLFYLNLNRCQLSD--DGCEKFSKIGSLKVLNLGFNEITDECLV-HLKGLT 276 (448)
Q Consensus 201 ~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~l~~~~ 276 (448)
.++++|+.+.+.++.+..... .....|++++.|+++.|-+.. ........+|+|+.|+++.|.+...... .-..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 456778888887775544322 345678888888888876543 2334456678888888877765421111 112456
Q ss_pred CCcEEeccCCccCcchhh-hhhCCCCCCEeeccCCCCCcchhhhhcCCCCCCEEeccCCCCChHH-HHHHhCCCCCcEeE
Q 013171 277 NLESLNLDSCGIGDEGLV-NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS-LRKLAGLSSLKSLN 354 (448)
Q Consensus 277 ~L~~l~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~ 354 (448)
+|+.|.++.|+++..... .+..+|+|+.|.+..|...........-+..|+.|+|++|.+.+.. ....+.+|.|..|.
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 777888888777643322 2346778888888777421111111233456777888777655432 23445677777777
Q ss_pred ccCCCCChhhHHH------hhCCCCCCEEEcCCCCCChHH-HHhhhCCCCCCEEeeCCCCCC
Q 013171 355 LDARQITDTGLAA------LTSLTGLTHLDLFGARITDSG-AAYLRNFKNLRSLEICGGGLT 409 (448)
Q Consensus 355 l~~~~l~~~~~~~------l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~ 409 (448)
++.+.+.+..... ...+++|+.|.+..|++.+.. ...+...++|+.|.+..|.+.
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 7777766543222 235677777777777764321 223345566777776666654
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.06 E-value=1.7e-10 Score=91.84 Aligned_cols=125 Identities=28% Similarity=0.372 Sum_probs=37.6
Q ss_pred CCCEeeccCCCCCcchhhhhc-CCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEccCCCCChhhHHHhhCCCCCCEEEc
Q 013171 301 NLKCLELSDTQVGSSGLRHLS-GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379 (448)
Q Consensus 301 ~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l 379 (448)
.++.|++.++.+... +.+. .+.+|+.|++++|.+... ..+..++.|++|++++|.++.........+|+|++|++
T Consensus 20 ~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 20 KLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred ccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence 455555555555432 2233 345566666666655542 23445566666666666666542211134566666666
Q ss_pred CCCCCChHH-HHhhhCCCCCCEEeeCCCCCChh---HHHhhhcCCCCCeecccC
Q 013171 380 FGARITDSG-AAYLRNFKNLRSLEICGGGLTDA---GVKHIKDLSSLTLLNLSQ 429 (448)
Q Consensus 380 ~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~---~~~~l~~~~~L~~l~l~~ 429 (448)
++|++.+.. ...+..+++|+.|++.+|++... -...+..+|+|+.||-..
T Consensus 96 ~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 96 SNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred cCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 666554421 13345566666666666665532 122345677777776543
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.00 E-value=3e-10 Score=90.36 Aligned_cols=128 Identities=30% Similarity=0.359 Sum_probs=47.0
Q ss_pred CCCCCcEEeccCCccCcchhhhhh-CCCCCCEeeccCCCCCcchhhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcE
Q 013171 274 GLTNLESLNLDSCGIGDEGLVNLT-GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352 (448)
Q Consensus 274 ~~~~L~~l~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 352 (448)
++.++++|++.++.+... ..++ .+.+|+.|++++|.+.. ...+..+++|+.|++++|.+..........+|+|++
T Consensus 17 n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~--l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITK--LEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred cccccccccccccccccc--cchhhhhcCCCEEECCCCCCcc--ccCccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence 344566777777766532 2333 35677777777777765 234566778888888888777653322235788888
Q ss_pred eEccCCCCChhh-HHHhhCCCCCCEEEcCCCCCChHH---HHhhhCCCCCCEEeeCC
Q 013171 353 LNLDARQITDTG-LAALTSLTGLTHLDLFGARITDSG---AAYLRNFKNLRSLEICG 405 (448)
Q Consensus 353 L~l~~~~l~~~~-~~~l~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~L~~L~l~~ 405 (448)
|++++|.+.+.. ...+..+|+|+.|++.+|++.... ...+..+|+|+.||-..
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 888888776532 345667888888888888776532 23346788888887654
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.91 E-value=4.6e-10 Score=93.63 Aligned_cols=130 Identities=25% Similarity=0.314 Sum_probs=94.7
Q ss_pred CCCCCeEecCCCCCchhHHHHHhcCCCCCEEEccCccCChhhHHhhhcCCCCcEEEccCCCcChhHHHHhhCCCCCcEEe
Q 013171 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282 (448)
Q Consensus 203 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~ 282 (448)
...|+.+++++|.+..+ .+++.-.|.++.|+++.|.+.... .++.+++|+.|++++|.++.. ..+-..+-+++.|.
T Consensus 283 Wq~LtelDLS~N~I~~i-DESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls~~-~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQI-DESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLAEC-VGWHLKLGNIKTLK 358 (490)
T ss_pred Hhhhhhccccccchhhh-hhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhHhh-hhhHhhhcCEeeee
Confidence 35577888888876654 556677788899999888876543 377788899999988876542 22334566888888
Q ss_pred ccCCccCcchhhhhhCCCCCCEeeccCCCCCcc-hhhhhcCCCCCCEEeccCCCCCh
Q 013171 283 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS-GLRHLSGLTNLESINLSFTGISD 338 (448)
Q Consensus 283 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~ 338 (448)
+++|.+.. ...+..+.+|..|++.+|++... ....++++|.|+.+.+.+|.+..
T Consensus 359 La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 359 LAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 88887643 33456677888999999887653 24567888999999999887654
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.87 E-value=4.9e-10 Score=93.51 Aligned_cols=129 Identities=23% Similarity=0.263 Sum_probs=97.4
Q ss_pred CCCCEEEccCccCChhhHHhhhcCCCCcEEEccCCCcChhHHHHhhCCCCCcEEeccCCccCcchhhhhhCCCCCCEeec
Q 013171 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 307 (448)
Q Consensus 228 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l 307 (448)
..|+.+++++|.++.. .....-.|.++.|+++.|.+... ..+..+++|+.|++++|.+...... =..+.+++.|.+
T Consensus 284 q~LtelDLS~N~I~~i-DESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~~Gw-h~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLITQI-DESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAECVGW-HLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchhhh-hhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhhhhh-HhhhcCEeeeeh
Confidence 5688999999987653 24455678999999999987653 3377889999999999877543221 125678899999
Q ss_pred cCCCCCcchhhhhcCCCCCCEEeccCCCCChHH-HHHHhCCCCCcEeEccCCCCCh
Q 013171 308 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGS-LRKLAGLSSLKSLNLDARQITD 362 (448)
Q Consensus 308 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~ 362 (448)
++|.+.+ ...+..+-+|..|++++|.+.+.. ...++++|.|+++.+.+|.+..
T Consensus 360 a~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 360 AQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 9987654 345566778999999999887643 4567889999999999998765
No 38
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.84 E-value=8e-08 Score=79.38 Aligned_cols=206 Identities=23% Similarity=0.287 Sum_probs=132.5
Q ss_pred hcCCCCCEEEccCccCChhhHHhh----hcCCCCcEEEccCCC---cChh-------HHHHhhCCCCCcEEeccCCccCc
Q 013171 225 SALGSLFYLNLNRCQLSDDGCEKF----SKIGSLKVLNLGFNE---ITDE-------CLVHLKGLTNLESLNLDSCGIGD 290 (448)
Q Consensus 225 ~~~~~L~~L~l~~~~~~~~~~~~l----~~~~~L~~L~l~~~~---~~~~-------~~~~l~~~~~L~~l~l~~~~~~~ 290 (448)
..+..++.+++++|.+.......+ ++-.+|+..+++.-. ..+. ....+..||+|+.++++.|.++.
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 335555666666666554443333 334556666655321 1111 22345689999999999998876
Q ss_pred chhhh----hhCCCCCCEeeccCCCCCcchhhhh-------------cCCCCCCEEeccCCCCChHHH----HHHhCCCC
Q 013171 291 EGLVN----LTGLCNLKCLELSDTQVGSSGLRHL-------------SGLTNLESINLSFTGISDGSL----RKLAGLSS 349 (448)
Q Consensus 291 ~~~~~----l~~~~~L~~L~l~~~~~~~~~~~~l-------------~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~ 349 (448)
..++. +++...|+.|.+.+|.++...-..+ ..-|.|+.....+|.+..... ..+..-..
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~ 186 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHEN 186 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcC
Confidence 55443 4566789999999997765332211 345788888888886654322 22333468
Q ss_pred CcEeEccCCCCChhhHH-----HhhCCCCCCEEEcCCCCCChHH----HHhhhCCCCCCEEeeCCCCCChhHHHhh----
Q 013171 350 LKSLNLDARQITDTGLA-----ALTSLTGLTHLDLFGARITDSG----AAYLRNFKNLRSLEICGGGLTDAGVKHI---- 416 (448)
Q Consensus 350 L~~L~l~~~~l~~~~~~-----~l~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~l---- 416 (448)
|+.+.+..|.+...+.. .+..+.+|+.|++.+|.++..+ ..++..++.|+.|.+.+|-+...+...+
T Consensus 187 lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f 266 (388)
T COG5238 187 LKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRF 266 (388)
T ss_pred ceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHh
Confidence 88999988888765443 3346788999999999777543 3445677889999999998765444433
Q ss_pred --hcCCCCCeecccCC
Q 013171 417 --KDLSSLTLLNLSQN 430 (448)
Q Consensus 417 --~~~~~L~~l~l~~~ 430 (448)
...|+|..|-..+|
T Consensus 267 ~e~~~p~l~~L~~~Yn 282 (388)
T COG5238 267 NEKFVPNLMPLPGDYN 282 (388)
T ss_pred hhhcCCCccccccchh
Confidence 23677887777776
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.74 E-value=2.7e-09 Score=69.66 Aligned_cols=59 Identities=29% Similarity=0.447 Sum_probs=44.3
Q ss_pred CCCCEEEcCCCCCChHHHHhhhCCCCCCEEeeCCCCCChhHHHhhhcCCCCCeecccCC
Q 013171 372 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430 (448)
Q Consensus 372 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~ 430 (448)
|+|+.|++++|+++...+..+..+++|++|++++|.+....+..|.++++|+.|++++|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 46777777777777766667777777777777777777776677777777777777777
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.66 E-value=7.9e-09 Score=67.44 Aligned_cols=61 Identities=28% Similarity=0.441 Sum_probs=45.1
Q ss_pred CCCcEeEccCCCCChhhHHHhhCCCCCCEEEcCCCCCChHHHHhhhCCCCCCEEeeCCCCC
Q 013171 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 408 (448)
Q Consensus 348 ~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 408 (448)
|+|++|++++|.++......+..+++|+.|++++|.+....+..|..+++|+.|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4677777777777766566677777777777777777776667777777788887777764
No 41
>PLN03150 hypothetical protein; Provisional
Probab=98.66 E-value=4.2e-08 Score=95.86 Aligned_cols=108 Identities=24% Similarity=0.300 Sum_probs=75.8
Q ss_pred CCEEeccCCCCChHHHHHHhCCCCCcEeEccCCCCChhhHHHhhCCCCCCEEEcCCCCCChHHHHhhhCCCCCCEEeeCC
Q 013171 326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 405 (448)
Q Consensus 326 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 405 (448)
++.|+|+++.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++.+..|..+.++++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 56677777777666666677777777777777777766666677777777777777777776677777777777777777
Q ss_pred CCCChhHHHhhhc-CCCCCeecccCCCCC
Q 013171 406 GGLTDAGVKHIKD-LSSLTLLNLSQNCNL 433 (448)
Q Consensus 406 ~~~~~~~~~~l~~-~~~L~~l~l~~~~~l 433 (448)
|.+.+..|..+.. ..++..+++.+|+.+
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccc
Confidence 7777666666654 245566666666433
No 42
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.61 E-value=2.7e-08 Score=83.16 Aligned_cols=64 Identities=17% Similarity=0.237 Sum_probs=32.6
Q ss_pred CCCCcEeEccCCCCChhhH-HHhhCCCCCCEEEcCCCCCChH-HHHhhhCCCCCCEEeeCCCCCCh
Q 013171 347 LSSLKSLNLDARQITDTGL-AALTSLTGLTHLDLFGARITDS-GAAYLRNFKNLRSLEICGGGLTD 410 (448)
Q Consensus 347 ~~~L~~L~l~~~~l~~~~~-~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~ 410 (448)
+|++..+.+..|.+..... .....+|.+..|.++.+++.+- ...++..++.|..|.+.++++.+
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 4556666655555543322 2333455555555555555442 22344556666666666655543
No 43
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.56 E-value=1.5e-07 Score=91.86 Aligned_cols=138 Identities=24% Similarity=0.243 Sum_probs=81.7
Q ss_pred CCCCeEeccCCcccChhHHHhh-cCCCCCCEEeCCCCccccHHHHHHHhCCCCCcEEecCCccccccchhhccCCCCCcE
Q 013171 81 SNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159 (448)
Q Consensus 81 ~~L~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 159 (448)
.+|++|+++|...+....+..+ ..+|.|+.|.+++-.+..+.......++|+|+.|||+++... ....++++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~--nl~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS--NLSGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc--CcHHHhccccHHH
Confidence 4677777777655555555555 356777777777766555554555567777777777774322 2255667777777
Q ss_pred EeccCCCccCccccccCcCCCCccEEEecCCCCChHH------HHhccCCCCCCeEecCCCCCchhH
Q 013171 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG------IAYLKGLQKLTLLNLEGCPVTAAC 220 (448)
Q Consensus 160 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~------~~~l~~~~~L~~L~l~~~~~~~~~ 220 (448)
|.+++-..........+..+++|+.||++........ ...-..+|+|+.|+.+++.+....
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI 266 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence 7776644333344455666777777777754332211 111134567777777766655433
No 44
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.49 E-value=1.5e-07 Score=87.76 Aligned_cols=196 Identities=30% Similarity=0.385 Sum_probs=114.6
Q ss_pred EEEecCCCCChHHHHhccCCCCCCeEecCCCCCchhHHHHHhcCC-CCCEEEccCccCChhhHHhhhcCCCCcEEEccCC
Q 013171 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG-SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262 (448)
Q Consensus 184 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 262 (448)
.+....+.+... ...+...+.++.+.+..+.+... +....... +|+.|+++.+.+... +..+..+++|+.|+++.|
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~~i-~~~~~~~~~nL~~L~l~~N~i~~l-~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNITDI-PPLIGLLKSNLKELDLSDNKIESL-PSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccC-chhhhcccceeEEecCCcccccC-ccccccchhhcccccccccchhhh-hhhhhccccccccccCCc
Confidence 455555554211 22334446777778777766654 23334443 788888887776543 234567777888888777
Q ss_pred CcChhHHHHhhCCCCCcEEeccCCccCcchhhhhhCCCCCCEeeccCCCCCcchhhhhcCCCCCCEEeccCCCCChHHHH
Q 013171 263 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR 342 (448)
Q Consensus 263 ~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 342 (448)
.+.+.. ......+.|+.++++++.+...... ......|+++.+.+|.... .+..+....++..+.+..+.+... +.
T Consensus 174 ~l~~l~-~~~~~~~~L~~L~ls~N~i~~l~~~-~~~~~~L~~l~~~~N~~~~-~~~~~~~~~~l~~l~l~~n~~~~~-~~ 249 (394)
T COG4886 174 DLSDLP-KLLSNLSNLNNLDLSGNKISDLPPE-IELLSALEELDLSNNSIIE-LLSSLSNLKNLSGLELSNNKLEDL-PE 249 (394)
T ss_pred hhhhhh-hhhhhhhhhhheeccCCccccCchh-hhhhhhhhhhhhcCCccee-cchhhhhcccccccccCCceeeec-cc
Confidence 766432 2222566777777777776543322 1233447777777763221 233445556666666666655432 34
Q ss_pred HHhCCCCCcEeEccCCCCChhhHHHhhCCCCCCEEEcCCCCCChHH
Q 013171 343 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388 (448)
Q Consensus 343 ~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 388 (448)
.++.+++++.|++++|.++.... ++...+++.|+++++.+....
T Consensus 250 ~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 250 SIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred hhccccccceecccccccccccc--ccccCccCEEeccCccccccc
Confidence 45566667777777777766433 666677777777777665543
No 45
>PLN03150 hypothetical protein; Provisional
Probab=98.48 E-value=3.2e-07 Score=89.80 Aligned_cols=108 Identities=24% Similarity=0.241 Sum_probs=91.5
Q ss_pred CCCEeeccCCCCCcchhhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEccCCCCChhhHHHhhCCCCCCEEEcC
Q 013171 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 380 (448)
Q Consensus 301 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~ 380 (448)
.++.|++.++.+....+..+..+++|+.|+|++|.+.+..+..++.+++|+.|++++|.+.+..+..++.+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 36788899988887778888889999999999999887777888899999999999999998878888999999999999
Q ss_pred CCCCChHHHHhhhC-CCCCCEEeeCCCCC
Q 013171 381 GARITDSGAAYLRN-FKNLRSLEICGGGL 408 (448)
Q Consensus 381 ~~~~~~~~~~~~~~-~~~L~~L~l~~~~~ 408 (448)
+|.+.+..|..+.. ..++..+++.+|..
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCcc
Confidence 99998877877754 35677888888753
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.47 E-value=2.2e-07 Score=77.87 Aligned_cols=210 Identities=16% Similarity=0.158 Sum_probs=118.1
Q ss_pred CCCCCCeEeccCCcccChhHHHhh-cCCCCCCEEeCCCCccccHHHH-HHHhCCCCCcEEecCCccccccchhhc-cCCC
Q 013171 79 DCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGM-KAFAGLINLVKLDLERCTRIHGGLVNL-KGLM 155 (448)
Q Consensus 79 ~~~~L~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l-~~l~ 155 (448)
....++.|.+.+|..-.......| ..+..++.+++.+|.+-.-... ..+.++|.|++|+++.|... .....+ ....
T Consensus 43 s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~-s~I~~lp~p~~ 121 (418)
T KOG2982|consen 43 SLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLS-SDIKSLPLPLK 121 (418)
T ss_pred cccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCC-CccccCccccc
Confidence 334555667777632233334445 4567889999988875433333 34468899999999886532 222333 3456
Q ss_pred CCcEEeccCCCccCccccccCcCCCCccEEEecCCCCChHHH--Hhcc-CCCCCCeEecCCCCCch--hHHHHHhcCCCC
Q 013171 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI--AYLK-GLQKLTLLNLEGCPVTA--ACLDSLSALGSL 230 (448)
Q Consensus 156 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~l~-~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L 230 (448)
+|++|.+.++.-........+..+|.++.|.++.|+...... .... -.+.++++...+|.... .......-+|++
T Consensus 122 nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv 201 (418)
T KOG2982|consen 122 NLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNV 201 (418)
T ss_pred ceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccc
Confidence 788888877544444444555677777888777663321100 0111 12345556665553211 111122345777
Q ss_pred CEEEccCccCChhhH-HhhhcCCCCcEEEccCCCcChh-HHHHhhCCCCCcEEeccCCccC
Q 013171 231 FYLNLNRCQLSDDGC-EKFSKIGSLKVLNLGFNEITDE-CLVHLKGLTNLESLNLDSCGIG 289 (448)
Q Consensus 231 ~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~l~l~~~~~~ 289 (448)
..+-+-.+.+..... .....+|.+..|+++.+++.+. ..+.+..++.|..+.+..+.+.
T Consensus 202 ~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 202 NSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred hheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 777776665544332 2234456666777776666543 3455677777777777776554
No 47
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.44 E-value=8.4e-09 Score=93.71 Aligned_cols=155 Identities=21% Similarity=0.199 Sum_probs=62.9
Q ss_pred HhcCCCCCEEEccCccCChhhHHhhhcCCCCcEEEccCCCcChhHHHHhhCCCCCcEEeccCCccCcchhhhhhCCCCCC
Q 013171 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 303 (448)
Q Consensus 224 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~ 303 (448)
++.+..|+.+.++.|.+.. .+..+..+..|+.++++.|+++. .+..+..++ |+.+-+++++++ ..+..++..++|.
T Consensus 94 ~~~f~~Le~liLy~n~~r~-ip~~i~~L~~lt~l~ls~NqlS~-lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~ 169 (722)
T KOG0532|consen 94 ACAFVSLESLILYHNCIRT-IPEAICNLEALTFLDLSSNQLSH-LPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLA 169 (722)
T ss_pred HHHHHHHHHHHHHhcccee-cchhhhhhhHHHHhhhccchhhc-CChhhhcCc-ceeEEEecCccc-cCCcccccchhHH
Confidence 3444444444444444322 22334444445555555544432 122233332 444444444443 2222233334444
Q ss_pred EeeccCCCCCcchhhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEccCCCCChhhHHHhhCCCCCCEEEcCCCC
Q 013171 304 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 383 (448)
Q Consensus 304 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~ 383 (448)
.|+.+.|.+.. .+..+..+.+|+.|++..|.+.... ..+..+ .|.+|++++|++... +..+..+..|++|.|.+|+
T Consensus 170 ~ld~s~nei~s-lpsql~~l~slr~l~vrRn~l~~lp-~El~~L-pLi~lDfScNkis~i-Pv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 170 HLDVSKNEIQS-LPSQLGYLTSLRDLNVRRNHLEDLP-EELCSL-PLIRLDFSCNKISYL-PVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred Hhhhhhhhhhh-chHHhhhHHHHHHHHHhhhhhhhCC-HHHhCC-ceeeeecccCceeec-chhhhhhhhheeeeeccCC
Confidence 44444444333 2223334444444444444433322 222211 244444444444433 3333444444444444444
Q ss_pred CCh
Q 013171 384 ITD 386 (448)
Q Consensus 384 ~~~ 386 (448)
++.
T Consensus 246 LqS 248 (722)
T KOG0532|consen 246 LQS 248 (722)
T ss_pred CCC
Confidence 443
No 48
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.42 E-value=3.1e-07 Score=85.67 Aligned_cols=183 Identities=32% Similarity=0.374 Sum_probs=134.8
Q ss_pred CcCCCCccEEEecCCCCChHHHHhccCCC-CCCeEecCCCCCchhHHHHHhcCCCCCEEEccCccCChhhHHhhhcCCCC
Q 013171 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQ-KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSL 254 (448)
Q Consensus 176 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 254 (448)
+...+.++.+++..+.++... ......+ +|+.|+++++.+... +..+..+++|+.|+++.|++.+.. ......+.|
T Consensus 112 ~~~~~~l~~L~l~~n~i~~i~-~~~~~~~~nL~~L~l~~N~i~~l-~~~~~~l~~L~~L~l~~N~l~~l~-~~~~~~~~L 188 (394)
T COG4886 112 LLELTNLTSLDLDNNNITDIP-PLIGLLKSNLKELDLSDNKIESL-PSPLRNLPNLKNLDLSFNDLSDLP-KLLSNLSNL 188 (394)
T ss_pred hhcccceeEEecCCcccccCc-cccccchhhcccccccccchhhh-hhhhhccccccccccCCchhhhhh-hhhhhhhhh
Confidence 444578899999988887533 3334443 899999999988764 356789999999999999987643 333377899
Q ss_pred cEEEccCCCcChhHHHHhhCCCCCcEEeccCCccCcchhhhhhCCCCCCEeeccCCCCCcchhhhhcCCCCCCEEeccCC
Q 013171 255 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334 (448)
Q Consensus 255 ~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 334 (448)
+.|+++++.+.... ........|+++.+.++... ..+..+..+..+..+.+.++.+... +..+..+++++.|++++|
T Consensus 189 ~~L~ls~N~i~~l~-~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~-~~~~~~l~~l~~L~~s~n 265 (394)
T COG4886 189 NNLDLSGNKISDLP-PEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDL-PESIGNLSNLETLDLSNN 265 (394)
T ss_pred hheeccCCccccCc-hhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeec-cchhccccccceeccccc
Confidence 99999999887543 33344556999999888432 3344456677788888877776542 456677888999999999
Q ss_pred CCChHHHHHHhCCCCCcEeEccCCCCChhhHH
Q 013171 335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLA 366 (448)
Q Consensus 335 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~ 366 (448)
.+.+... ++...+++.|+++++.+......
T Consensus 266 ~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 266 QISSISS--LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred ccccccc--ccccCccCEEeccCccccccchh
Confidence 8887554 77889999999999888765433
No 49
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.37 E-value=1.7e-08 Score=94.30 Aligned_cols=221 Identities=29% Similarity=0.320 Sum_probs=109.9
Q ss_pred CcCCCCccEEEecCCCCChHHHHhccCCCCCCeEecCCCCCchhHHHHHhcCCCCCEEEccCccCChhhHHhhhcCCCCc
Q 013171 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255 (448)
Q Consensus 176 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 255 (448)
+..+++|+.+++..+.+.... ..+..+++|++|++++|.+... ..+..++.|+.|++.+|.+... ..+..++.|+
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~ 165 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISDI--SGLESLKSLK 165 (414)
T ss_pred cccccceeeeeccccchhhcc-cchhhhhcchheeccccccccc--cchhhccchhhheeccCcchhc--cCCccchhhh
Confidence 555666777777766665321 1145566677777777666542 2344555666677766665532 2334456666
Q ss_pred EEEccCCCcChhHH-HHhhCCCCCcEEeccCCccCcchhhhhhCCCCCCEeeccCCCCCcchhhhhcCCCC--CCEEecc
Q 013171 256 VLNLGFNEITDECL-VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN--LESINLS 332 (448)
Q Consensus 256 ~L~l~~~~~~~~~~-~~l~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~--L~~L~l~ 332 (448)
.++++++.+..... . ...+.+++.+.+.++.+..... +..+..+..+.+..+.+.... .+..... |+.++++
T Consensus 166 ~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~--~~~~~~l~~~~l~~n~i~~~~--~l~~~~~~~L~~l~l~ 240 (414)
T KOG0531|consen 166 LLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEG--LDLLKKLVLLSLLDNKISKLE--GLNELVMLHLRELYLS 240 (414)
T ss_pred cccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccc--hHHHHHHHHhhcccccceecc--CcccchhHHHHHHhcc
Confidence 66666666554332 1 3455566666666655432211 111222333344444433211 1112222 5666666
Q ss_pred CCCCChHHHHHHhCCCCCcEeEccCCCCChhhHHHhhCCCCCCEEEcCCCCCChH---HHHh-hhCCCCCCEEeeCCCCC
Q 013171 333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS---GAAY-LRNFKNLRSLEICGGGL 408 (448)
Q Consensus 333 ~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~---~~~~-~~~~~~L~~L~l~~~~~ 408 (448)
++.+.... ..+..+..+..+++..+.+... ..+...+.+..+....+.+... .... ....+.++.+.+..+.+
T Consensus 241 ~n~i~~~~-~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (414)
T KOG0531|consen 241 GNRISRSP-EGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPI 317 (414)
T ss_pred cCcccccc-ccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCcc
Confidence 66555421 2334455666666666555542 2333444455555555544321 1111 23455666666666654
Q ss_pred C
Q 013171 409 T 409 (448)
Q Consensus 409 ~ 409 (448)
.
T Consensus 318 ~ 318 (414)
T KOG0531|consen 318 R 318 (414)
T ss_pred c
Confidence 4
No 50
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.35 E-value=7.6e-07 Score=85.72 Aligned_cols=231 Identities=30% Similarity=0.327 Sum_probs=106.0
Q ss_pred CCCCCeEecCCCCCchh--HHHHHhcCCCCCEEEccCc-c-CChhh---HHhhhcCCCCcEEEccCCC-cChhHHHHhh-
Q 013171 203 LQKLTLLNLEGCPVTAA--CLDSLSALGSLFYLNLNRC-Q-LSDDG---CEKFSKIGSLKVLNLGFNE-ITDECLVHLK- 273 (448)
Q Consensus 203 ~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~-~-~~~~~---~~~l~~~~~L~~L~l~~~~-~~~~~~~~l~- 273 (448)
++.|+.+.+.++..... .......+++|+.|+++++ . ..... ......+++|+.++++++. +++.....+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 45555555555422221 2233445566666666542 1 11100 1122334555666665554 4444433333
Q ss_pred CCCCCcEEeccCCc-cCcchhhhhh-CCCCCCEeeccCCCCC-cchhh-hhcCCCCCCEEeccCCC----CCh-------
Q 013171 274 GLTNLESLNLDSCG-IGDEGLVNLT-GLCNLKCLELSDTQVG-SSGLR-HLSGLTNLESINLSFTG----ISD------- 338 (448)
Q Consensus 274 ~~~~L~~l~l~~~~-~~~~~~~~l~-~~~~L~~L~l~~~~~~-~~~~~-~l~~~~~L~~L~l~~~~----~~~------- 338 (448)
.+++|+.+.+.+|. +++.+...+. .++.|++|++.+|... +.... ....+++++.+.+.... ++.
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~ 346 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLL 346 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhh
Confidence 25566666655554 3444443333 3555666666655432 11111 12234444443332221 111
Q ss_pred ------HHHHHHhCCCCCcEeEccCCCCChhhH-HHhhCCCCCCEEEcCCCCCChHHHHhhhCCCCCCEEeeCCCC-CCh
Q 013171 339 ------GSLRKLAGLSSLKSLNLDARQITDTGL-AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG-LTD 410 (448)
Q Consensus 339 ------~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~ 410 (448)
........++.++.+.+..+.....+. ..+.+++.|+ .........+..++.|++..+. .+.
T Consensus 347 ~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~----------~~l~~~~~~~~~l~~L~l~~~~~~t~ 416 (482)
T KOG1947|consen 347 TLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT----------ESLELRLCRSDSLRVLNLSDCRLVTD 416 (482)
T ss_pred ccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc----------hHHHHHhccCCccceEecccCccccc
Confidence 111122234555555554444333221 2222333331 1111112223337888888886 444
Q ss_pred hHHHhhhc-CCCCCeecccCCCCCCHHHHHHHHh
Q 013171 411 AGVKHIKD-LSSLTLLNLSQNCNLTDKTLELISG 443 (448)
Q Consensus 411 ~~~~~l~~-~~~L~~l~l~~~~~l~~~~~~~l~~ 443 (448)
........ +..++.+++.+|+.++..+.+.+..
T Consensus 417 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 450 (482)
T KOG1947|consen 417 KGLRCLADSCSNLKDLDLSGCRVITLKSLEGFAS 450 (482)
T ss_pred cchHHHhhhhhccccCCccCcccccchhhhhhhc
Confidence 44444443 7888999999998888887765443
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.34 E-value=7.6e-07 Score=87.01 Aligned_cols=153 Identities=21% Similarity=0.179 Sum_probs=99.0
Q ss_pred cCCCccEEEcccCC-CChHHhHhcc-CCCCCCeEeccCCcccChhHHHhhcCCCCCCEEeCCCCccccHHHHHHHhCCCC
Q 013171 55 QGSSLLSVDLSGSD-VTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLIN 132 (448)
Q Consensus 55 ~~~~l~~L~l~~~~-~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~ 132 (448)
.-.+|+.|++++.. +...++..++ -+|+|++|.+.+-....+........+|+|..||+|+++.. . ..-++++++
T Consensus 120 sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-n--l~GIS~Lkn 196 (699)
T KOG3665|consen 120 SRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-N--LSGISRLKN 196 (699)
T ss_pred HHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-C--cHHHhcccc
Confidence 34688889998754 4445555554 67899999988843333333334468899999999988752 2 255678888
Q ss_pred CcEEecCCccccc-cchhhccCCCCCcEEeccCCCccCcc-c----cccCcCCCCccEEEecCCCCChHHHHhc-cCCCC
Q 013171 133 LVKLDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDS-D----MKPLSGLTNLKSLQISCSKVTDSGIAYL-KGLQK 205 (448)
Q Consensus 133 L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~-~----~~~~~~~~~L~~L~l~~~~~~~~~~~~l-~~~~~ 205 (448)
|++|.+.+-.... .....+-.+++|+.||++........ . ...-..+|+|+.|+.+++.+.......+ ...++
T Consensus 197 Lq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~ 276 (699)
T KOG3665|consen 197 LQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPN 276 (699)
T ss_pred HHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCcc
Confidence 8888887633222 23345677889999999864333322 0 1122358899999999988887665544 33455
Q ss_pred CCeEe
Q 013171 206 LTLLN 210 (448)
Q Consensus 206 L~~L~ 210 (448)
|+.+.
T Consensus 277 L~~i~ 281 (699)
T KOG3665|consen 277 LQQIA 281 (699)
T ss_pred Hhhhh
Confidence 55444
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.29 E-value=2.3e-08 Score=93.52 Aligned_cols=125 Identities=26% Similarity=0.257 Sum_probs=79.1
Q ss_pred CCCEeeccCCCCCcchhhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEccCCCCChhhHHHhhCCCCCCEEEcC
Q 013171 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 380 (448)
Q Consensus 301 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~ 380 (448)
.|.+.+.+.|.+.. ....+.-++.++.|+|+.|.+.+.. .+..++.|++|+++.|.+....-....++. |..|.++
T Consensus 165 ~L~~a~fsyN~L~~-mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLVL-MDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHHh-HHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeec
Confidence 34555555555432 2334455567777777777776543 566777778888877776654333333444 7888888
Q ss_pred CCCCChHHHHhhhCCCCCCEEeeCCCCCChhH-HHhhhcCCCCCeecccCCC
Q 013171 381 GARITDSGAAYLRNFKNLRSLEICGGGLTDAG-VKHIKDLSSLTLLNLSQNC 431 (448)
Q Consensus 381 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~l~l~~~~ 431 (448)
||.++.. ..+.++.+|+.||+++|-+.+.. ..-++.+..|+.|++.|||
T Consensus 241 nN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 241 NNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred ccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 8877653 44667788888888887665321 2234567778888888886
No 53
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.29 E-value=4e-08 Score=91.98 Aligned_cols=107 Identities=28% Similarity=0.404 Sum_probs=44.0
Q ss_pred hcCCCCcEEEccCCCcChhHHHHhhCCCCCcEEeccCCccCcchhhhhhCCCCCCEeeccCCCCCcchhhhhcCCCCCCE
Q 013171 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES 328 (448)
Q Consensus 249 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 328 (448)
.-++.|+.|+++.|++++. ..+..++.|++|++++|.+....-.....+ .|..|.+++|.++. ...+..+.+|+.
T Consensus 184 qll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l~t--L~gie~LksL~~ 258 (1096)
T KOG1859|consen 184 QLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNALTT--LRGIENLKSLYG 258 (1096)
T ss_pred HHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhh-hheeeeecccHHHh--hhhHHhhhhhhc
Confidence 3344455555555544432 234445555555555554432211111111 25555555554432 223344445555
Q ss_pred EeccCCCCChH-HHHHHhCCCCCcEeEccCCCC
Q 013171 329 INLSFTGISDG-SLRKLAGLSSLKSLNLDARQI 360 (448)
Q Consensus 329 L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~l 360 (448)
|++++|-+.+. ....+..+..|..|++.+|.+
T Consensus 259 LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 259 LDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred cchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 55555433221 111122234445555555443
No 54
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.27 E-value=1.2e-06 Score=84.46 Aligned_cols=143 Identities=30% Similarity=0.405 Sum_probs=70.3
Q ss_pred ChHHHHHHHhcCCCccEEEcccC-CCChH-HhHhccCCCCCCeEeccCC-cccChhH---HHhhcCCCCCCEEeCCCCcc
Q 013171 45 NDKWMDVIASQGSSLLSVDLSGS-DVTDS-GLIHLKDCSNLQSLDFNFC-IQISDGG---LEHLRGLSNLTSLSFRRNNA 118 (448)
Q Consensus 45 ~~~~~~~~~~~~~~l~~L~l~~~-~~~~~-~~~~~~~~~~L~~L~l~~~-~~~~~~~---~~~l~~~~~L~~L~l~~~~~ 118 (448)
...+.......++.++.+.+..+ .+++. .......+++|+.|++++| ....... ......+++|+.|+++++..
T Consensus 176 ~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 255 (482)
T KOG1947|consen 176 LDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGL 255 (482)
T ss_pred cHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhc
Confidence 33444444444666666666644 33332 2233456666666666552 1111111 22234456666666666654
Q ss_pred ccHHHHHHHh-CCCCCcEEecCCccc-cccchhh-ccCCCCCcEEeccCCCccCcccccc-CcCCCCccEEEe
Q 013171 119 ITAQGMKAFA-GLINLVKLDLERCTR-IHGGLVN-LKGLMKLESLNIKWCNCITDSDMKP-LSGLTNLKSLQI 187 (448)
Q Consensus 119 ~~~~~~~~~~-~l~~L~~L~l~~~~~-~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~~L~~L~l 187 (448)
+++.....+. .|++|+.|.+.+|.. ....... ...++.|++|++++|..+++..... ...+++++.+.+
T Consensus 256 isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 256 VTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL 328 (482)
T ss_pred cCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence 4444444444 366666666665552 2222222 3446666666666666554332222 223555555443
No 55
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.25 E-value=3.9e-08 Score=89.51 Aligned_cols=169 Identities=20% Similarity=0.200 Sum_probs=82.3
Q ss_pred EEecCCCCChHHHHhccCCCCCCeEecCCCCCchhHHHHHhcCCCCCEEEccCccCChhhHHhhhcCCCCcEEEccCCCc
Q 013171 185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 264 (448)
Q Consensus 185 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 264 (448)
.+++.|.+. +.+..+..+..|+.+.+..|.+..+ +..++++..|+.++++.|++.. .+..+..++ |+.|.+++|++
T Consensus 80 aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r~i-p~~i~~L~~lt~l~ls~NqlS~-lp~~lC~lp-Lkvli~sNNkl 155 (722)
T KOG0532|consen 80 ADLSRNRFS-ELPEEACAFVSLESLILYHNCIRTI-PEAICNLEALTFLDLSSNQLSH-LPDGLCDLP-LKVLIVSNNKL 155 (722)
T ss_pred hhccccccc-cCchHHHHHHHHHHHHHHhccceec-chhhhhhhHHHHhhhccchhhc-CChhhhcCc-ceeEEEecCcc
Confidence 344444443 2223333344455555555544332 4445555666666666655443 222333332 55555565555
Q ss_pred ChhHHHHhhCCCCCcEEeccCCccCcchhhhhhCCCCCCEeeccCCCCCcchhhhhcCCCCCCEEeccCCCCChHHHHHH
Q 013171 265 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344 (448)
Q Consensus 265 ~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 344 (448)
+. .+..++..+.|..++.+.|.+.. .+..++.+.+|+.|.+..|++.+. +..+..+ .|..|+++.|.+.. .|..|
T Consensus 156 ~~-lp~~ig~~~tl~~ld~s~nei~s-lpsql~~l~slr~l~vrRn~l~~l-p~El~~L-pLi~lDfScNkis~-iPv~f 230 (722)
T KOG0532|consen 156 TS-LPEEIGLLPTLAHLDVSKNEIQS-LPSQLGYLTSLRDLNVRRNHLEDL-PEELCSL-PLIRLDFSCNKISY-LPVDF 230 (722)
T ss_pred cc-CCcccccchhHHHhhhhhhhhhh-chHHhhhHHHHHHHHHhhhhhhhC-CHHHhCC-ceeeeecccCceee-cchhh
Confidence 42 23334444555556665555442 233344555556666655555442 2233322 35556666555544 23445
Q ss_pred hCCCCCcEeEccCCCCCh
Q 013171 345 AGLSSLKSLNLDARQITD 362 (448)
Q Consensus 345 ~~~~~L~~L~l~~~~l~~ 362 (448)
..+..|+.|.|.+|.+..
T Consensus 231 r~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 231 RKMRHLQVLQLENNPLQS 248 (722)
T ss_pred hhhhhheeeeeccCCCCC
Confidence 556666666666665554
No 56
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.20 E-value=1e-07 Score=88.97 Aligned_cols=215 Identities=33% Similarity=0.361 Sum_probs=122.2
Q ss_pred CCCCCCeEecCCCCCchhHHHHHhcCCCCCEEEccCccCChhhHHhhhcCCCCcEEEccCCCcChhHHHHhhCCCCCcEE
Q 013171 202 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281 (448)
Q Consensus 202 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l 281 (448)
.+..++.+.+..+.+... ...+..+.+|+.+++..|.+..... .+..+++|++|++++|.++.. ..+..++.|+.|
T Consensus 70 ~l~~l~~l~l~~n~i~~~-~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L 145 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKI-LNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKEL 145 (414)
T ss_pred HhHhHHhhccchhhhhhh-hcccccccceeeeeccccchhhccc-chhhhhcchheeccccccccc--cchhhccchhhh
Confidence 344555555555544431 2335566777778877777654321 155677777777777776642 234455567777
Q ss_pred eccCCccCcchhhhhhCCCCCCEeeccCCCCCcchh-hhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEccCCCC
Q 013171 282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL-RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360 (448)
Q Consensus 282 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l 360 (448)
++.+|.+... ..+..++.|+.+++.+|.+..... . ...+.+++.+.+.++.+.... .+..+..+..+.+..|.+
T Consensus 146 ~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~--~~~~~~~l~~~~l~~n~i 220 (414)
T KOG0531|consen 146 NLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE--GLDLLKKLVLLSLLDNKI 220 (414)
T ss_pred eeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc--chHHHHHHHHhhcccccc
Confidence 7777766432 233346677777777776655433 1 355566777777776554321 111222333335555555
Q ss_pred ChhhHHHhhCCCC--CCEEEcCCCCCChHHHHhhhCCCCCCEEeeCCCCCChhHHHhhhcCCCCCeecccCC
Q 013171 361 TDTGLAALTSLTG--LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430 (448)
Q Consensus 361 ~~~~~~~l~~~~~--L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~ 430 (448)
... ..+..++. |+.+++.+|++.... ..+..++.+..+++.++++... ..+...+.+..+....+
T Consensus 221 ~~~--~~l~~~~~~~L~~l~l~~n~i~~~~-~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~ 287 (414)
T KOG0531|consen 221 SKL--EGLNELVMLHLRELYLSGNRISRSP-EGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDN 287 (414)
T ss_pred eec--cCcccchhHHHHHHhcccCcccccc-ccccccccccccchhhcccccc--ccccccchHHHhccCcc
Confidence 442 22222232 788888888777532 4566678888888888876542 22334455555555555
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.97 E-value=1.1e-05 Score=64.13 Aligned_cols=102 Identities=25% Similarity=0.340 Sum_probs=44.1
Q ss_pred CCEeeccCCCCCcchhhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEccCCCCChhh-HHHhhCCCCCCEEEcC
Q 013171 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG-LAALTSLTGLTHLDLF 380 (448)
Q Consensus 302 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~l~~~~~L~~L~l~ 380 (448)
...+++++|.+.. ...+..++.|..|.+.+|.++...+..-.-+|+|..|.+.+|.+...+ ...+..+|.|+.|.+-
T Consensus 44 ~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 44 FDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred cceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 3444444444332 223344445555555555444433332223445555555554444321 2333445555555555
Q ss_pred CCCCChHHH---HhhhCCCCCCEEeeCC
Q 013171 381 GARITDSGA---AYLRNFKNLRSLEICG 405 (448)
Q Consensus 381 ~~~~~~~~~---~~~~~~~~L~~L~l~~ 405 (448)
+|++..... ..+..+|+|+.||+..
T Consensus 122 ~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 122 GNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred CCchhcccCceeEEEEecCcceEeehhh
Confidence 554443221 1124445555555543
No 58
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.89 E-value=1.8e-05 Score=60.87 Aligned_cols=121 Identities=22% Similarity=0.351 Sum_probs=40.6
Q ss_pred hhCCCCCCEeeccCCCCCcchhhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEccCCCCChhhHHHhhCCCCCC
Q 013171 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 375 (448)
Q Consensus 296 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~ 375 (448)
|..+.+|+.+.+.. .+.......+..+++|+.+.+..+ +......++..+++++.+.+.+ .+.......+..+++|+
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 33444444444442 233333333444444555554442 3333333444444555555533 22222233344455555
Q ss_pred EEEcCCCCCChHHHHhhhCCCCCCEEeeCCCCCChhHHHhhhcCCCC
Q 013171 376 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 422 (448)
Q Consensus 376 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 422 (448)
.+.+..+ +.......+.++ .|+.+.+.. .+.......|.+|++|
T Consensus 85 ~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 85 NIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp EEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 5555443 333344445555 555555554 3333334445555544
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.84 E-value=2.1e-05 Score=62.47 Aligned_cols=105 Identities=23% Similarity=0.255 Sum_probs=82.7
Q ss_pred CCCCEEeccCCCCChHHHHHHhCCCCCcEeEccCCCCChhhHHHhhCCCCCCEEEcCCCCCChHHH-HhhhCCCCCCEEe
Q 013171 324 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA-AYLRNFKNLRSLE 402 (448)
Q Consensus 324 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~ 402 (448)
.+...+++++|.+... ..+..++.|.+|.+.+|.++...+..-..+|+|+.|.+.+|.+.+.+. ..+..||+|+.|.
T Consensus 42 d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 4567788888877643 456778999999999999998766665678999999999998887543 3467899999999
Q ss_pred eCCCCCChhHHH---hhhcCCCCCeecccCC
Q 013171 403 ICGGGLTDAGVK---HIKDLSSLTLLNLSQN 430 (448)
Q Consensus 403 l~~~~~~~~~~~---~l~~~~~L~~l~l~~~ 430 (448)
+-+|+++..--. .+..+|+|+.||.++=
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 999998754222 2468999999999653
No 60
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.75 E-value=4.9e-05 Score=58.42 Aligned_cols=122 Identities=20% Similarity=0.334 Sum_probs=51.8
Q ss_pred hhCCCCCcEEeccCCccCcchhhhhhCCCCCCEeeccCCCCCcchhhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCc
Q 013171 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351 (448)
Q Consensus 272 l~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 351 (448)
|..+.+|+.+.+.. .+.......|..+++|+.+.+.++ +.......+..+++++.+.+.. .+......++..+++|+
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 44555666666653 344444455556666666666553 4444444556666667776654 33333334555667777
Q ss_pred EeEccCCCCChhhHHHhhCCCCCCEEEcCCCCCChHHHHhhhCCCCCC
Q 013171 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399 (448)
Q Consensus 352 ~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 399 (448)
.+.+..+ +.......+.++ .|+.+.+.+ .+.......|.+|++|+
T Consensus 85 ~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 85 NIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp EEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred ccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 7776543 444444455565 677777765 34444556666666654
No 61
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.71 E-value=2.2e-05 Score=62.42 Aligned_cols=84 Identities=32% Similarity=0.430 Sum_probs=73.6
Q ss_pred CccEEEcccCCCChHHhHhccCCCCCCeEeccCCcccChhHHHhhcC-CCCCCEEeCCCCccccHHHHHHHhCCCCCcEE
Q 013171 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRG-LSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136 (448)
Q Consensus 58 ~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 136 (448)
.++.++-+++.+..+....+.+++.++.|.+.+|..+.+...+-++. .++|+.|++++|..++......+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 47788888888999999999999999999999999998888888854 57999999999998888888889999999999
Q ss_pred ecCCc
Q 013171 137 DLERC 141 (448)
Q Consensus 137 ~l~~~ 141 (448)
.+..-
T Consensus 182 ~l~~l 186 (221)
T KOG3864|consen 182 HLYDL 186 (221)
T ss_pred HhcCc
Confidence 88763
No 62
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.69 E-value=1.4e-05 Score=59.27 Aligned_cols=112 Identities=21% Similarity=0.227 Sum_probs=77.9
Q ss_pred CCCEeeccCCCCCc--chhhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEccCCCCChhhHHHhhCCCCCCEEE
Q 013171 301 NLKCLELSDTQVGS--SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 378 (448)
Q Consensus 301 ~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~ 378 (448)
.+..++++.|.+.. ..+..+.....|...++++|.+.+.....-..+|..+.+++.+|.+++. +..++.++.|+.|+
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdv-PeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDV-PEELAAMPALRSLN 106 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhc-hHHHhhhHHhhhcc
Confidence 45567777776543 2344455667788888888887765555445677888888888888877 44488888888888
Q ss_pred cCCCCCChHHHHhhhCCCCCCEEeeCCCCCChhHHH
Q 013171 379 LFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 414 (448)
Q Consensus 379 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 414 (448)
++.|.+... +..+..+.++-.|+..+|.+..+...
T Consensus 107 l~~N~l~~~-p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 107 LRFNPLNAE-PRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred cccCccccc-hHHHHHHHhHHHhcCCCCccccCcHH
Confidence 888877654 44444477777788888877655444
No 63
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.67 E-value=5.2e-05 Score=45.07 Aligned_cols=38 Identities=34% Similarity=0.510 Sum_probs=23.2
Q ss_pred CCCCEEEcCCCCCChHHHHhhhCCCCCCEEeeCCCCCCh
Q 013171 372 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 410 (448)
Q Consensus 372 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 410 (448)
++|++|++++|++++. +..+.++++|+.|++++|++++
T Consensus 1 ~~L~~L~l~~N~i~~l-~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQITDL-PPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-SSH-GGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCccc-CchHhCCCCCCEEEecCCCCCC
Confidence 3567777777777654 3346667777777777776654
No 64
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.65 E-value=8.5e-05 Score=44.14 Aligned_cols=33 Identities=36% Similarity=0.567 Sum_probs=14.5
Q ss_pred CCCEEeeCCCCCChhHHHhhhcCCCCCeecccCC
Q 013171 397 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430 (448)
Q Consensus 397 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~ 430 (448)
+|++|++++|++++. +..++++++|+.|++++|
T Consensus 2 ~L~~L~l~~N~i~~l-~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNNQITDL-PPELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSSS-SSH-GGHGTTCTTSSEEEETSS
T ss_pred cceEEEccCCCCccc-CchHhCCCCCCEEEecCC
Confidence 444555555554433 223444555555555554
No 65
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.49 E-value=1.8e-05 Score=58.67 Aligned_cols=110 Identities=24% Similarity=0.273 Sum_probs=79.4
Q ss_pred CCcEEeccCCccCc--chhhhhhCCCCCCEeeccCCCCCcchhhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeE
Q 013171 277 NLESLNLDSCGIGD--EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354 (448)
Q Consensus 277 ~L~~l~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 354 (448)
.+..++++.|.+.. ..+..+.....|+..++++|.+.+.....-...+.++.+++.+|.+.+.. ..++.+|.|+.++
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvP-eE~Aam~aLr~lN 106 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVP-EELAAMPALRSLN 106 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhch-HHHhhhHHhhhcc
Confidence 34556777776542 23344555667888899999888766555566778899999999888754 4488889999999
Q ss_pred ccCCCCChhhHHHhhCCCCCCEEEcCCCCCChHH
Q 013171 355 LDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388 (448)
Q Consensus 355 l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 388 (448)
+..|.+... +..+..+.++-.|+..+|...++.
T Consensus 107 l~~N~l~~~-p~vi~~L~~l~~Lds~~na~~eid 139 (177)
T KOG4579|consen 107 LRFNPLNAE-PRVIAPLIKLDMLDSPENARAEID 139 (177)
T ss_pred cccCccccc-hHHHHHHHhHHHhcCCCCccccCc
Confidence 999888876 455555777888888888666543
No 66
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.38 E-value=0.00018 Score=57.33 Aligned_cols=80 Identities=39% Similarity=0.473 Sum_probs=40.9
Q ss_pred CCEEeccCCCCChHHHHHHhCCCCCcEeEccCC-CCChhhHHHhh-CCCCCCEEEcCCC-CCChHHHHhhhCCCCCCEEe
Q 013171 326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDAR-QITDTGLAALT-SLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLE 402 (448)
Q Consensus 326 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~~~~~~l~-~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~ 402 (448)
++.++-+++.+...+.+.+.++++++.|.+.+| .+.+.....++ ..++|+.|++++| +|++.+...+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 444555555555555555555555555555554 23333333333 2355555555555 45555555555555555555
Q ss_pred eCC
Q 013171 403 ICG 405 (448)
Q Consensus 403 l~~ 405 (448)
+.+
T Consensus 183 l~~ 185 (221)
T KOG3864|consen 183 LYD 185 (221)
T ss_pred hcC
Confidence 554
No 67
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.33 E-value=0.0013 Score=59.66 Aligned_cols=136 Identities=15% Similarity=0.155 Sum_probs=67.3
Q ss_pred HhcCCCCCEEEccCccCChhhHHhhhcCCCCcEEEccCCCcChhHHHHhhCCCCCcEEeccCC-ccCcchhhhhhCCCCC
Q 013171 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNL 302 (448)
Q Consensus 224 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~-~~~~~~~~~l~~~~~L 302 (448)
+..+.+++.|++++|.+... | .-.++|+.|.+.+|..-...+..+ .++|+.|.+.+| .+. . -.++|
T Consensus 48 ~~~~~~l~~L~Is~c~L~sL-P---~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-s------LP~sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESL-P---VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-G------LPESV 114 (426)
T ss_pred HHHhcCCCEEEeCCCCCccc-C---CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-c------ccccc
Confidence 44567888888888765542 2 123468888887653222222222 246777777766 222 1 12356
Q ss_pred CEeeccCCCCCcchhhhhcCC-CCCCEEeccCCCCChHHHHHHh-CC-CCCcEeEccCCCCChhhHHHhhCCCCCCEEEc
Q 013171 303 KCLELSDTQVGSSGLRHLSGL-TNLESINLSFTGISDGSLRKLA-GL-SSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379 (448)
Q Consensus 303 ~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~-~~-~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l 379 (448)
+.|.+.++.... +..+ ++|+.|.+..+..... ..+. .+ ++|+.|.+.+|..... +..+ .++|+.|.+
T Consensus 115 e~L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~--~~lp~~LPsSLk~L~Is~c~~i~L-P~~L--P~SLk~L~l 184 (426)
T PRK15386 115 RSLEIKGSATDS-----IKNVPNGLTSLSINSYNPENQ--ARIDNLISPSLKTLSLTGCSNIIL-PEKL--PESLQSITL 184 (426)
T ss_pred ceEEeCCCCCcc-----cccCcchHhheeccccccccc--cccccccCCcccEEEecCCCcccC-cccc--cccCcEEEe
Confidence 666665443321 1222 3566666643221100 0000 11 4677777766654321 1112 246666666
Q ss_pred CCC
Q 013171 380 FGA 382 (448)
Q Consensus 380 ~~~ 382 (448)
+.+
T Consensus 185 s~n 187 (426)
T PRK15386 185 HIE 187 (426)
T ss_pred ccc
Confidence 554
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.21 E-value=5.2e-05 Score=63.42 Aligned_cols=100 Identities=27% Similarity=0.233 Sum_probs=59.8
Q ss_pred CCCCCEeeccCCCCCcchhhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEccCCCCChhh-HHHhhCCCCCCEE
Q 013171 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG-LAALTSLTGLTHL 377 (448)
Q Consensus 299 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~l~~~~~L~~L 377 (448)
+.+.+.|+.+||.+.+.. ....++.|+.|.|+-|.++.. ..+..|.+|++|+|..|.+.+.. ..-+.++|+|+.|
T Consensus 18 l~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHHH--HHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 345666777777665532 335667777777777776653 34556777777777777666532 3445577777777
Q ss_pred EcCCCCCChHH-----HHhhhCCCCCCEEe
Q 013171 378 DLFGARITDSG-----AAYLRNFKNLRSLE 402 (448)
Q Consensus 378 ~l~~~~~~~~~-----~~~~~~~~~L~~L~ 402 (448)
+|..|+-.+.. ...+.-+|+|++||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 77666433322 12335566666654
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.14 E-value=7.8e-05 Score=62.39 Aligned_cols=109 Identities=28% Similarity=0.325 Sum_probs=78.1
Q ss_pred CCCCCEEeccCCCCChHHHHHHhCCCCCcEeEccCCCCChhhHHHhhCCCCCCEEEcCCCCCChHH-HHhhhCCCCCCEE
Q 013171 323 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG-AAYLRNFKNLRSL 401 (448)
Q Consensus 323 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L 401 (448)
+.+.+.|+.-+|.+.++. ....++.|+.|.|+-|.++. ...+..|.+|++|+|..|.|.+.. ...+.++|+|+.|
T Consensus 18 l~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHHH--HHHhcccceeEEeecccccc--chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 456788888888887643 34578999999999888887 455667888999999988887643 3445888999999
Q ss_pred eeCCCCCChhHHH-----hhhcCCCCCeecccCCCCCCHHHH
Q 013171 402 EICGGGLTDAGVK-----HIKDLSSLTLLNLSQNCNLTDKTL 438 (448)
Q Consensus 402 ~l~~~~~~~~~~~-----~l~~~~~L~~l~l~~~~~l~~~~~ 438 (448)
.+..|...+..+. .+.-+|+|++|| |..+++...
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD---nv~VteeEl 132 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD---NVPVTEEEL 132 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc---CccccHHHH
Confidence 9998875543222 234578888876 334554443
No 70
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=97.09 E-value=0.00072 Score=34.92 Aligned_cols=25 Identities=32% Similarity=0.416 Sum_probs=22.6
Q ss_pred CCCCCeecccCCCCCCHHHHHHHHh
Q 013171 419 LSSLTLLNLSQNCNLTDKTLELISG 443 (448)
Q Consensus 419 ~~~L~~l~l~~~~~l~~~~~~~l~~ 443 (448)
|++|++|++++|+.+++.++..+++
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~~ 25 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALAK 25 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHhc
Confidence 6899999999999999999998764
No 71
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.80 E-value=0.00063 Score=56.71 Aligned_cols=36 Identities=42% Similarity=0.603 Sum_probs=15.5
Q ss_pred CCCcEeEccCCCCChh-hHHHhhCCCCCCEEEcCCCC
Q 013171 348 SSLKSLNLDARQITDT-GLAALTSLTGLTHLDLFGAR 383 (448)
Q Consensus 348 ~~L~~L~l~~~~l~~~-~~~~l~~~~~L~~L~l~~~~ 383 (448)
|+|+++.+++|++... ....+..+++|..|++.+|.
T Consensus 91 P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 91 PNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCS 127 (260)
T ss_pred CceeEEeecCCccccccccchhhhhcchhhhhcccCC
Confidence 5555555555444421 12223344444455555443
No 72
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.77 E-value=0.0057 Score=55.70 Aligned_cols=166 Identities=13% Similarity=0.111 Sum_probs=97.4
Q ss_pred hhhcCCCCcEEEccCCCcChhHHHHhhCCCCCcEEeccCCccCcchhhhhhCCCCCCEeeccCCC-CCcchhhhhcCCCC
Q 013171 247 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTN 325 (448)
Q Consensus 247 ~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~ 325 (448)
.+..+.+++.|++++|.+... | .-.++|+.|.+.+|.--...+..+ .++|+.|.+.+|. +.. -.++
T Consensus 47 r~~~~~~l~~L~Is~c~L~sL-P---~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~s-------LP~s 113 (426)
T PRK15386 47 QIEEARASGRLYIKDCDIESL-P---VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISG-------LPES 113 (426)
T ss_pred HHHHhcCCCEEEeCCCCCccc-C---CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccc-------cccc
Confidence 355678999999999876643 2 123479999998864322333333 3589999999873 321 1257
Q ss_pred CCEEeccCCCCChHHHHHHhCC-CCCcEeEccCCC-CChhhHHHhhCCCCCCEEEcCCCCCChHHHHhhhCCCCCCEEee
Q 013171 326 LESINLSFTGISDGSLRKLAGL-SSLKSLNLDARQ-ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403 (448)
Q Consensus 326 L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~-l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 403 (448)
|+.|.+..+.... +..+ ++|+.|.+.++. ........ .-+++|+.|.+++|.... .|..+ ..+|+.|.+
T Consensus 114 Le~L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~-~LPsSLk~L~Is~c~~i~-LP~~L--P~SLk~L~l 184 (426)
T PRK15386 114 VRSLEIKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDN-LISPSLKTLSLTGCSNII-LPEKL--PESLQSITL 184 (426)
T ss_pred cceEEeCCCCCcc-----cccCcchHhheecccccccccccccc-ccCCcccEEEecCCCccc-Ccccc--cccCcEEEe
Confidence 8888887654432 2233 468888875422 11110110 123689999999987553 23333 368999999
Q ss_pred CCCCCCh--hHHHhhhcCCCCCeecccCCCCCCHHH
Q 013171 404 CGGGLTD--AGVKHIKDLSSLTLLNLSQNCNLTDKT 437 (448)
Q Consensus 404 ~~~~~~~--~~~~~l~~~~~L~~l~l~~~~~l~~~~ 437 (448)
+.+.... .....+ .+++ .|++.+|..+....
T Consensus 185 s~n~~~sLeI~~~sL--P~nl-~L~f~n~lkL~~~~ 217 (426)
T PRK15386 185 HIEQKTTWNISFEGF--PDGL-DIDLQNSVLLSPDV 217 (426)
T ss_pred cccccccccCccccc--cccc-EechhhhcccCHHH
Confidence 8764221 111122 1455 77777775555443
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.77 E-value=0.00032 Score=65.93 Aligned_cols=83 Identities=25% Similarity=0.279 Sum_probs=40.4
Q ss_pred CCeEecCCCCCch----hHHHHHhcCCCCCEEEccCccCChhhHHhhhc----C-CCCcEEEccCCCcChhH----HHHh
Q 013171 206 LTLLNLEGCPVTA----ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK----I-GSLKVLNLGFNEITDEC----LVHL 272 (448)
Q Consensus 206 L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~----~-~~L~~L~l~~~~~~~~~----~~~l 272 (448)
+..+.+.+|.+.. .....+...+.|+.|++++|.+.+.....+.. . +.++.|.+..|.+++.. ...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 4555555554433 22334455667777777777766544333321 1 33444555444444322 2223
Q ss_pred hCCCCCcEEeccCCcc
Q 013171 273 KGLTNLESLNLDSCGI 288 (448)
Q Consensus 273 ~~~~~L~~l~l~~~~~ 288 (448)
.....++.++++.|.+
T Consensus 169 ~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGL 184 (478)
T ss_pred hcccchhHHHHHhccc
Confidence 3344555555555544
No 74
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.64 E-value=0.00068 Score=56.53 Aligned_cols=106 Identities=25% Similarity=0.318 Sum_probs=70.5
Q ss_pred CCCCCEEeccCCCCChHHHHHHhCCCCCcEeEccCC--CCChhhHHHhhCCCCCCEEEcCCCCCChH-HHHhhhCCCCCC
Q 013171 323 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR--QITDTGLAALTSLTGLTHLDLFGARITDS-GAAYLRNFKNLR 399 (448)
Q Consensus 323 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~--~l~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~ 399 (448)
...|+.+++.++.++. ...+..+|+|+.|.++.| ++..........+|+|+.+.+++|++... ....+..+.+|.
T Consensus 42 ~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 42 FVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred ccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence 3466666666665553 234556789999999998 44433222334669999999999987741 123345677888
Q ss_pred EEeeCCCCCCh---hHHHhhhcCCCCCeecccCC
Q 013171 400 SLEICGGGLTD---AGVKHIKDLSSLTLLNLSQN 430 (448)
Q Consensus 400 ~L~l~~~~~~~---~~~~~l~~~~~L~~l~l~~~ 430 (448)
.|++.+|..+. ---..+.-+++|+.++-...
T Consensus 120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 99999987553 22334566889988877554
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.50 E-value=0.00055 Score=64.40 Aligned_cols=213 Identities=31% Similarity=0.389 Sum_probs=132.5
Q ss_pred CCEEEccCccCChhhH----HhhhcCCCCcEEEccCCCcChhHHHHh----hCC-CCCcEEeccCCccCcchh----hhh
Q 013171 230 LFYLNLNRCQLSDDGC----EKFSKIGSLKVLNLGFNEITDECLVHL----KGL-TNLESLNLDSCGIGDEGL----VNL 296 (448)
Q Consensus 230 L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~~~~l----~~~-~~L~~l~l~~~~~~~~~~----~~l 296 (448)
+..+.+.+|.+..... ..+...+.|+.|+++++.+.+.....+ ... +.+++|.+..|.++..+. ..+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 6677777777665443 344567889999999988876444333 222 456777777777665433 334
Q ss_pred hCCCCCCEeeccCCCCCcchh----hhhc----CCCCCCEEeccCCCCChHHHH----HHhCCCC-CcEeEccCCCCChh
Q 013171 297 TGLCNLKCLELSDTQVGSSGL----RHLS----GLTNLESINLSFTGISDGSLR----KLAGLSS-LKSLNLDARQITDT 363 (448)
Q Consensus 297 ~~~~~L~~L~l~~~~~~~~~~----~~l~----~~~~L~~L~l~~~~~~~~~~~----~~~~~~~-L~~L~l~~~~l~~~ 363 (448)
...+.++.+++..|.+...+. ..+. ...++++|++.+|.++..... .+...++ +..+++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 456788888888887643221 1222 356788888888877654433 2334444 66688888887766
Q ss_pred hHHHh----hCC-CCCCEEEcCCCCCChHH----HHhhhCCCCCCEEeeCCCCCChhHHHh----hhcCCCCCeecccCC
Q 013171 364 GLAAL----TSL-TGLTHLDLFGARITDSG----AAYLRNFKNLRSLEICGGGLTDAGVKH----IKDLSSLTLLNLSQN 430 (448)
Q Consensus 364 ~~~~l----~~~-~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~----l~~~~~L~~l~l~~~ 430 (448)
+...+ ..+ +.++.++++.|.+.+.. ...+..++.++++.+.+|.+.+..... +.....+..+.+.++
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~ 328 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGT 328 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhcccc
Confidence 44433 233 56688888888777543 444566778888888888877554433 344566666666655
Q ss_pred CCCCHHHHHHHH
Q 013171 431 CNLTDKTLELIS 442 (448)
Q Consensus 431 ~~l~~~~~~~l~ 442 (448)
-..+...-..+.
T Consensus 329 ~~~~~~~~~~~~ 340 (478)
T KOG4308|consen 329 GKGTRGGTSVLA 340 (478)
T ss_pred CccchhHHHHHH
Confidence 445444444433
No 76
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=95.45 E-value=0.0092 Score=29.99 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=12.7
Q ss_pred CCCCCeecccCCCCCCHHHHHHHH
Q 013171 419 LSSLTLLNLSQNCNLTDKTLELIS 442 (448)
Q Consensus 419 ~~~L~~l~l~~~~~l~~~~~~~l~ 442 (448)
+++|+.|++++| .+++.+++.++
T Consensus 1 ~~~L~~L~l~~n-~i~~~g~~~l~ 23 (24)
T PF13516_consen 1 NPNLETLDLSNN-QITDEGASALA 23 (24)
T ss_dssp -TT-SEEE-TSS-BEHHHHHHHHH
T ss_pred CCCCCEEEccCC-cCCHHHHHHhC
Confidence 356666666666 46666666654
No 77
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=94.83 E-value=0.046 Score=28.64 Aligned_cols=26 Identities=35% Similarity=0.410 Sum_probs=20.5
Q ss_pred CCCCeecccCCCCCCHHHHHHHHhhhc
Q 013171 420 SSLTLLNLSQNCNLTDKTLELISGILM 446 (448)
Q Consensus 420 ~~L~~l~l~~~~~l~~~~~~~l~~~~~ 446 (448)
++|+.|++++| .+++.++..+.+.+.
T Consensus 2 ~~L~~LdL~~N-~i~~~G~~~L~~~L~ 27 (28)
T smart00368 2 PSLRELDLSNN-KLGDEGARALAEALK 27 (28)
T ss_pred CccCEEECCCC-CCCHHHHHHHHHHhc
Confidence 57888888888 788888888877653
No 78
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=94.17 E-value=0.031 Score=28.03 Aligned_cols=21 Identities=29% Similarity=0.593 Sum_probs=10.5
Q ss_pred CCCCEEeeCCCCCChhHHHhh
Q 013171 396 KNLRSLEICGGGLTDAGVKHI 416 (448)
Q Consensus 396 ~~L~~L~l~~~~~~~~~~~~l 416 (448)
++|+.|++++|++++.++..+
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHh
Confidence 455666666666555554443
No 79
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=93.76 E-value=0.072 Score=27.31 Aligned_cols=23 Identities=48% Similarity=0.931 Sum_probs=11.2
Q ss_pred CCCCCeEeccCCcccChhHHHhh
Q 013171 80 CSNLQSLDFNFCIQISDGGLEHL 102 (448)
Q Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~l 102 (448)
|++|+.|+|++|..+++.....+
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l 23 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQAL 23 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHH
Confidence 34555555555555554444433
No 80
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=91.84 E-value=0.041 Score=26.89 Aligned_cols=12 Identities=42% Similarity=0.722 Sum_probs=5.6
Q ss_pred CCEEeeCCCCCC
Q 013171 398 LRSLEICGGGLT 409 (448)
Q Consensus 398 L~~L~l~~~~~~ 409 (448)
|++|++++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 444444444444
No 81
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=88.77 E-value=0.35 Score=21.82 Aligned_cols=12 Identities=42% Similarity=0.761 Sum_probs=4.1
Q ss_pred CCCEEeeCCCCC
Q 013171 397 NLRSLEICGGGL 408 (448)
Q Consensus 397 ~L~~L~l~~~~~ 408 (448)
+|+.|++++|++
T Consensus 2 ~L~~L~l~~n~L 13 (17)
T PF13504_consen 2 NLRTLDLSNNRL 13 (17)
T ss_dssp T-SEEEETSS--
T ss_pred ccCEEECCCCCC
Confidence 344444444443
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=84.89 E-value=0.79 Score=23.27 Aligned_cols=16 Identities=31% Similarity=0.549 Sum_probs=8.3
Q ss_pred CCCCEEeeCCCCCChh
Q 013171 396 KNLRSLEICGGGLTDA 411 (448)
Q Consensus 396 ~~L~~L~l~~~~~~~~ 411 (448)
++|+.|++++|++...
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00369 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 3455555555555444
No 83
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=84.89 E-value=0.79 Score=23.27 Aligned_cols=16 Identities=31% Similarity=0.549 Sum_probs=8.3
Q ss_pred CCCCEEeeCCCCCChh
Q 013171 396 KNLRSLEICGGGLTDA 411 (448)
Q Consensus 396 ~~L~~L~l~~~~~~~~ 411 (448)
++|+.|++++|++...
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00370 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 3455555555555444
No 84
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=68.06 E-value=6.6 Score=37.39 Aligned_cols=14 Identities=21% Similarity=0.406 Sum_probs=7.2
Q ss_pred CCCCCEeeccCCCC
Q 013171 299 LCNLKCLELSDTQV 312 (448)
Q Consensus 299 ~~~L~~L~l~~~~~ 312 (448)
.|.+..+.+++|++
T Consensus 217 ~p~i~sl~lsnNrL 230 (585)
T KOG3763|consen 217 FPEILSLSLSNNRL 230 (585)
T ss_pred Ccceeeeecccchh
Confidence 44555555555544
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=62.32 E-value=6.2 Score=20.17 Aligned_cols=14 Identities=21% Similarity=0.461 Sum_probs=8.3
Q ss_pred CCCCEEeeCCCCCC
Q 013171 396 KNLRSLEICGGGLT 409 (448)
Q Consensus 396 ~~L~~L~l~~~~~~ 409 (448)
.+|+.|++++|.|.
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45666666666654
No 86
>PF14162 YozD: YozD-like protein
Probab=59.94 E-value=10 Score=22.75 Aligned_cols=19 Identities=21% Similarity=0.415 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHhcCccCH
Q 013171 4 RDISQQIFNELVYSRCLTE 22 (448)
Q Consensus 4 ~~~~~~~~~~l~~~~~~~~ 22 (448)
||+++-++++|+.|+++..
T Consensus 11 EEIAefFy~eL~kRGyvP~ 29 (57)
T PF14162_consen 11 EEIAEFFYHELVKRGYVPT 29 (57)
T ss_pred HHHHHHHHHHHHHccCCCc
Confidence 7899999999999999854
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=54.92 E-value=12 Score=35.72 Aligned_cols=80 Identities=24% Similarity=0.235 Sum_probs=51.5
Q ss_pred CCCCCcEeEccCCCCChhh-HHHh-hCCCCCCEEEcCCC--CCChHHHHhh--hCCCCCCEEeeCCCCCChhH------H
Q 013171 346 GLSSLKSLNLDARQITDTG-LAAL-TSLTGLTHLDLFGA--RITDSGAAYL--RNFKNLRSLEICGGGLTDAG------V 413 (448)
Q Consensus 346 ~~~~L~~L~l~~~~l~~~~-~~~l-~~~~~L~~L~l~~~--~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~------~ 413 (448)
+.|.+..+.+++|++.... ...+ ...|+|+.|+|++| .+.. ...+ -....|++|.+.+|++.... .
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv 293 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLCTTFSDRSEYV 293 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCccccchhhhHHHH
Confidence 5688889999998776531 2233 36789999999998 3332 2333 23456889999999875321 1
Q ss_pred Hhh-hcCCCCCeecc
Q 013171 414 KHI-KDLSSLTLLNL 427 (448)
Q Consensus 414 ~~l-~~~~~L~~l~l 427 (448)
.++ ..+|+|..||=
T Consensus 294 ~~i~~~FPKL~~LDG 308 (585)
T KOG3763|consen 294 SAIRELFPKLLRLDG 308 (585)
T ss_pred HHHHHhcchheeecC
Confidence 111 35788777653
No 88
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=40.78 E-value=77 Score=30.01 Aligned_cols=111 Identities=16% Similarity=0.076 Sum_probs=60.1
Q ss_pred CCCEEeccCCCCChHHHH--HHhCCCCCcEeEccCCCCChh---h----HHHh--hCCCCCCEEEcCCCCCChHH---HH
Q 013171 325 NLESINLSFTGISDGSLR--KLAGLSSLKSLNLDARQITDT---G----LAAL--TSLTGLTHLDLFGARITDSG---AA 390 (448)
Q Consensus 325 ~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~---~----~~~l--~~~~~L~~L~l~~~~~~~~~---~~ 390 (448)
.++.+.+..+........ .+..-++.+.+++........ . +... ...--+..+.++.|...... ..
T Consensus 355 R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in 434 (553)
T KOG4242|consen 355 RVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAIN 434 (553)
T ss_pred eeeEeeccccccccccccccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHHH
Confidence 477777777765543322 223446777777755322110 0 0011 12234677777777655432 23
Q ss_pred hhhCCCCCCEEeeCCCCCChh----HHHhhhcCCCCCeecccCCCCCCHH
Q 013171 391 YLRNFKNLRSLEICGGGLTDA----GVKHIKDLSSLTLLNLSQNCNLTDK 436 (448)
Q Consensus 391 ~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~l~l~~~~~l~~~ 436 (448)
...+-+.++.|++++|...+. ++.++....+++.+..+.| ..+..
T Consensus 435 ~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n-~p~~~ 483 (553)
T KOG4242|consen 435 KLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLN-LPEDP 483 (553)
T ss_pred hhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCC-Ccccc
Confidence 335567888888888765432 3344444567777777766 44443
No 89
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=39.48 E-value=22 Score=18.24 Aligned_cols=13 Identities=23% Similarity=0.437 Sum_probs=6.0
Q ss_pred CCCEEEcCCCCCC
Q 013171 373 GLTHLDLFGARIT 385 (448)
Q Consensus 373 ~L~~L~l~~~~~~ 385 (448)
+|+.|.+++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 3444444444443
No 90
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=31.81 E-value=1.2 Score=37.22 Aligned_cols=89 Identities=12% Similarity=0.072 Sum_probs=39.3
Q ss_pred hhCCCCCCEeeccCCCCCcchhhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEccCCCCChhhHHHhhCCCCCC
Q 013171 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 375 (448)
Q Consensus 296 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~ 375 (448)
+..+...+.|+++.+++.... ..+..+..+..++++.+.+.- .+..++....+..++...|..+.. +..++..|+++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~-~n~s~~t~~~rl~~sknq~~~-~~~d~~q~~e~~~~~~~~n~~~~~-p~s~~k~~~~k 114 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLG-KNFSILTRLVRLDLSKNQIKF-LPKDAKQQRETVNAASHKNNHSQQ-PKSQKKEPHPK 114 (326)
T ss_pred hhccceeeeehhhhhHHHhhc-cchHHHHHHHHHhccHhhHhh-ChhhHHHHHHHHHHHhhccchhhC-CccccccCCcc
Confidence 334455566666655443321 122333455555555443321 112222223333444444333322 34445556666
Q ss_pred EEEcCCCCCChH
Q 013171 376 HLDLFGARITDS 387 (448)
Q Consensus 376 ~L~l~~~~~~~~ 387 (448)
.+++.++.+...
T Consensus 115 ~~e~k~~~~~~~ 126 (326)
T KOG0473|consen 115 KNEQKKTEFFRK 126 (326)
T ss_pred hhhhccCcchHH
Confidence 666666655443
No 91
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=29.52 E-value=2.4 Score=35.48 Aligned_cols=61 Identities=13% Similarity=0.080 Sum_probs=26.2
Q ss_pred hccCCCCCCeEeccCCcccChhHHHhhcCCCCCCEEeCCCCccccHHHHHHHhCCCCCcEEecCC
Q 013171 76 HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140 (448)
Q Consensus 76 ~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 140 (448)
.+..+....+|+++.+. +... -..|+.+..|..|+++.+.+ ...|.+++....++.++...
T Consensus 37 ei~~~kr~tvld~~s~r-~vn~-~~n~s~~t~~~rl~~sknq~--~~~~~d~~q~~e~~~~~~~~ 97 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNR-LVNL-GKNFSILTRLVRLDLSKNQI--KFLPKDAKQQRETVNAASHK 97 (326)
T ss_pred hhhccceeeeehhhhhH-HHhh-ccchHHHHHHHHHhccHhhH--hhChhhHHHHHHHHHHHhhc
Confidence 34455556666665542 1111 11223334455555554432 33344444444444444433
No 92
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=27.43 E-value=1.1e+02 Score=27.62 Aligned_cols=83 Identities=27% Similarity=0.279 Sum_probs=47.7
Q ss_pred CCCCcEeEccCC-CCChhh----HHHhhCCCCCCEEEcCCCCCChHHH----HhhhCCCCCCEEeeCCCCCChhHHHhh-
Q 013171 347 LSSLKSLNLDAR-QITDTG----LAALTSLTGLTHLDLFGARITDSGA----AYLRNFKNLRSLEICGGGLTDAGVKHI- 416 (448)
Q Consensus 347 ~~~L~~L~l~~~-~l~~~~----~~~l~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~l- 416 (448)
-+.++...+.+. .+.... ..++......+...+.+.+..+..+ ..+.-++.|+.|.+.+|-|++.+.-++
T Consensus 197 d~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnvesnFItg~gi~a~~ 276 (353)
T KOG3735|consen 197 DTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVESNFITGLGIMALL 276 (353)
T ss_pred CCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheeccccccccHHHHHHH
Confidence 467777777664 222211 2344455666666666655554332 233557888888888888886654333
Q ss_pred ---hcCCCCCeecccC
Q 013171 417 ---KDLSSLTLLNLSQ 429 (448)
Q Consensus 417 ---~~~~~L~~l~l~~ 429 (448)
....+|..+.+.+
T Consensus 277 ~al~~n~tl~el~~dn 292 (353)
T KOG3735|consen 277 RALQSNKSLTELKNDN 292 (353)
T ss_pred HHHhccchhhHhhhhh
Confidence 3445666655544
No 93
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=21.29 E-value=44 Score=17.12 Aligned_cols=14 Identities=29% Similarity=0.349 Sum_probs=9.0
Q ss_pred hhcCCCCCCEEeCC
Q 013171 101 HLRGLSNLTSLSFR 114 (448)
Q Consensus 101 ~l~~~~~L~~L~l~ 114 (448)
.+..+|+|++||..
T Consensus 8 Vi~~LPqL~~LD~~ 21 (26)
T smart00446 8 VIRLLPQLRKLDXX 21 (26)
T ss_pred HHHHCCccceeccc
Confidence 45666777777654
Done!