Query 013171
Match_columns 448
No_of_seqs 279 out of 2609
Neff 11.3
Searched_HMMs 29240
Date Mon Mar 25 05:31:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013171.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013171hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 4.6E-41 1.6E-45 337.1 12.8 373 56-430 268-714 (768)
2 3rgz_A Protein brassinosteroid 100.0 1.4E-39 4.8E-44 326.4 14.9 369 55-431 176-549 (768)
3 3t6q_A CD180 antigen; protein- 100.0 3.7E-39 1.3E-43 316.6 17.6 259 177-437 275-564 (606)
4 3t6q_A CD180 antigen; protein- 100.0 7.5E-39 2.6E-43 314.4 19.6 257 151-410 274-561 (606)
5 3vq2_A TLR4, TOLL-like recepto 100.0 9.3E-39 3.2E-43 313.7 12.8 386 57-445 32-570 (606)
6 2z81_A CD282 antigen, TOLL-lik 100.0 1.4E-36 4.9E-41 294.7 24.4 376 57-444 26-522 (549)
7 4eco_A Uncharacterized protein 100.0 4.4E-39 1.5E-43 315.6 3.8 376 45-430 66-597 (636)
8 2z63_A TOLL-like receptor 4, v 100.0 1.1E-37 3.7E-42 304.1 12.1 184 250-434 345-532 (570)
9 3v47_A TOLL-like receptor 5B a 100.0 9.8E-37 3.4E-41 288.9 16.8 360 56-431 29-406 (455)
10 3j0a_A TOLL-like receptor 5; m 100.0 2.4E-37 8.2E-42 313.4 9.3 378 55-434 22-517 (844)
11 1ziw_A TOLL-like receptor 3; i 100.0 7.5E-36 2.6E-40 296.9 19.6 326 108-434 250-623 (680)
12 3v47_A TOLL-like receptor 5B a 100.0 3E-36 1E-40 285.6 15.7 362 33-411 32-410 (455)
13 1ziw_A TOLL-like receptor 3; i 100.0 9E-36 3.1E-40 296.3 18.4 375 57-435 25-494 (680)
14 1z7x_W Ribonuclease inhibitor; 100.0 9.3E-34 3.2E-38 269.0 31.3 385 56-444 2-450 (461)
15 4eco_A Uncharacterized protein 100.0 3E-37 1E-41 302.6 7.4 370 54-434 203-633 (636)
16 2z7x_B TOLL-like receptor 1, v 100.0 9.3E-36 3.2E-40 286.9 15.7 372 57-441 21-489 (520)
17 4ecn_A Leucine-rich repeat pro 100.0 4.2E-37 1.4E-41 306.3 6.3 371 49-430 315-837 (876)
18 3vq2_A TLR4, TOLL-like recepto 100.0 9.5E-36 3.2E-40 292.4 14.4 369 59-434 13-534 (606)
19 1z7x_W Ribonuclease inhibitor; 100.0 1.9E-33 6.6E-38 266.8 26.1 363 80-445 2-422 (461)
20 1o6v_A Internalin A; bacterial 100.0 6.6E-33 2.2E-37 262.7 28.9 339 58-430 47-385 (466)
21 2z7x_B TOLL-like receptor 1, v 100.0 9.7E-34 3.3E-38 272.8 19.3 360 60-436 3-459 (520)
22 3j0a_A TOLL-like receptor 5; m 100.0 2.3E-35 7.7E-40 298.9 8.3 355 55-411 46-519 (844)
23 4ecn_A Leucine-rich repeat pro 100.0 7.5E-34 2.6E-38 283.0 15.8 352 53-416 444-847 (876)
24 3ogk_B Coronatine-insensitive 100.0 1E-32 3.5E-37 270.2 23.5 396 43-443 98-535 (592)
25 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.3E-33 7.8E-38 272.3 15.7 372 56-441 51-518 (562)
26 2z81_A CD282 antigen, TOLL-lik 100.0 2.4E-32 8.2E-37 265.1 22.8 368 32-413 27-514 (549)
27 1o6v_A Internalin A; bacterial 100.0 3.8E-31 1.3E-35 250.6 30.3 326 54-411 65-390 (466)
28 2z63_A TOLL-like receptor 4, v 100.0 1.4E-34 4.7E-39 282.3 6.6 186 225-411 344-533 (570)
29 4fmz_A Internalin; leucine ric 100.0 3E-31 1E-35 242.0 26.9 304 77-430 40-343 (347)
30 2p1m_B Transport inhibitor res 100.0 6.2E-32 2.1E-36 264.8 23.5 390 48-443 96-528 (594)
31 4fmz_A Internalin; leucine ric 100.0 6.9E-31 2.4E-35 239.6 28.8 305 55-409 42-346 (347)
32 2id5_A Lingo-1, leucine rich r 100.0 1.3E-32 4.3E-37 262.0 17.7 302 106-409 32-333 (477)
33 4g8a_A TOLL-like receptor 4; l 100.0 4.2E-33 1.4E-37 275.5 13.4 388 56-445 51-592 (635)
34 2id5_A Lingo-1, leucine rich r 100.0 7.1E-32 2.4E-36 256.9 16.7 303 56-361 31-333 (477)
35 3o6n_A APL1; leucine-rich repe 100.0 8E-31 2.7E-35 242.9 17.6 315 79-414 43-357 (390)
36 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.9E-31 6.6E-36 258.8 13.3 345 54-410 73-511 (562)
37 3o6n_A APL1; leucine-rich repe 100.0 4E-30 1.4E-34 238.1 19.7 317 55-392 43-359 (390)
38 3oja_B Anopheles plasmodium-re 100.0 9.8E-30 3.3E-34 248.1 17.6 314 79-413 49-362 (597)
39 3ogk_B Coronatine-insensitive 100.0 5.7E-28 2E-32 236.5 27.9 394 32-430 113-548 (592)
40 2p1m_B Transport inhibitor res 100.0 1.3E-27 4.6E-32 234.1 30.5 434 1-443 8-503 (594)
41 3oja_B Anopheles plasmodium-re 100.0 3.7E-29 1.3E-33 244.0 18.6 316 55-391 49-364 (597)
42 3bz5_A Internalin-J, INLJ; leu 100.0 3.5E-28 1.2E-32 228.3 21.5 327 55-430 40-384 (457)
43 3bz5_A Internalin-J, INLJ; leu 100.0 6.9E-28 2.3E-32 226.3 19.2 315 72-430 33-365 (457)
44 4g8a_A TOLL-like receptor 4; l 100.0 3.9E-28 1.3E-32 240.0 15.0 371 61-438 35-559 (635)
45 1xku_A Decorin; proteoglycan, 100.0 2.2E-27 7.5E-32 214.6 16.8 288 107-430 32-329 (330)
46 2ft3_A Biglycan; proteoglycan, 99.9 1.1E-27 3.8E-32 216.7 13.6 268 155-431 54-331 (332)
47 1ogq_A PGIP-2, polygalacturona 99.9 6.4E-29 2.2E-33 222.2 4.1 252 180-434 50-305 (313)
48 1xku_A Decorin; proteoglycan, 99.9 5.1E-27 1.7E-31 212.2 15.5 289 82-407 32-330 (330)
49 2ft3_A Biglycan; proteoglycan, 99.9 2.6E-27 9E-32 214.2 10.3 288 82-407 34-331 (332)
50 1ogq_A PGIP-2, polygalacturona 99.9 2.9E-28 9.9E-33 218.0 2.0 259 48-311 38-302 (313)
51 2z80_A TOLL-like receptor 2, v 99.9 5.7E-26 1.9E-30 207.2 14.7 257 156-436 53-317 (353)
52 1jl5_A Outer protein YOPM; leu 99.9 1.3E-26 4.3E-31 217.5 6.5 332 54-434 31-409 (454)
53 2z80_A TOLL-like receptor 2, v 99.9 9.2E-25 3.2E-29 199.2 16.6 255 56-312 51-313 (353)
54 3zyj_A Leucine-rich repeat-con 99.9 3.8E-25 1.3E-29 207.8 12.0 227 180-408 64-291 (440)
55 1ozn_A Reticulon 4 receptor; N 99.9 9.1E-25 3.1E-29 193.1 13.5 224 183-409 14-238 (285)
56 3zyi_A Leucine-rich repeat-con 99.9 3.1E-25 1.1E-29 209.2 11.1 227 180-408 75-302 (452)
57 2ast_B S-phase kinase-associat 99.9 6.1E-24 2.1E-28 192.7 18.5 261 1-286 11-282 (336)
58 2z66_A Variable lymphocyte rec 99.9 1.6E-25 5.4E-30 200.2 6.7 229 180-409 28-261 (306)
59 1jl5_A Outer protein YOPM; leu 99.9 6.5E-24 2.2E-28 199.1 16.6 318 56-430 90-426 (454)
60 1ozn_A Reticulon 4 receptor; N 99.9 7.6E-25 2.6E-29 193.6 9.3 250 179-430 31-284 (285)
61 3zyi_A Leucine-rich repeat-con 99.9 7.6E-24 2.6E-28 199.7 14.3 228 155-385 75-303 (452)
62 3zyj_A Leucine-rich repeat-con 99.9 7.2E-24 2.5E-28 199.2 14.1 228 155-385 64-292 (440)
63 2z66_A Variable lymphocyte rec 99.9 4.6E-24 1.6E-28 190.7 11.0 230 155-386 28-262 (306)
64 2ca6_A RAN GTPase-activating p 99.9 2.3E-22 7.8E-27 185.7 21.4 257 174-430 26-340 (386)
65 3o53_A Protein LRIM1, AGAP0063 99.9 6E-25 2.1E-29 197.0 3.9 239 151-404 30-270 (317)
66 4fcg_A Uncharacterized protein 99.9 2.2E-24 7.6E-29 193.9 7.4 231 180-430 81-311 (328)
67 3o53_A Protein LRIM1, AGAP0063 99.9 8.4E-24 2.9E-28 189.6 9.7 259 157-430 12-272 (317)
68 2ca6_A RAN GTPase-activating p 99.9 3.3E-22 1.1E-26 184.6 20.0 186 201-386 91-317 (386)
69 3goz_A Leucine-rich repeat-con 99.9 4.2E-23 1.4E-27 188.6 13.1 89 178-266 20-123 (362)
70 4fcg_A Uncharacterized protein 99.9 5.5E-24 1.9E-28 191.3 6.8 236 153-409 79-314 (328)
71 1wwl_A Monocyte differentiatio 99.9 8.3E-25 2.9E-29 195.7 -1.5 248 177-435 40-310 (312)
72 2ast_B S-phase kinase-associat 99.9 2.2E-21 7.5E-26 175.9 20.0 248 181-436 48-308 (336)
73 3oja_A Leucine-rich immune mol 99.9 5E-23 1.7E-27 195.0 7.8 236 153-403 32-269 (487)
74 3g06_A SSPH2 (leucine-rich rep 99.9 1.1E-20 3.7E-25 182.6 20.8 268 106-419 40-307 (622)
75 3oja_A Leucine-rich immune mol 99.9 1.4E-22 4.9E-27 191.9 7.3 238 177-428 31-270 (487)
76 1wwl_A Monocyte differentiatio 99.9 1.4E-23 4.8E-28 187.7 0.2 210 102-337 39-266 (312)
77 2z62_A TOLL-like receptor 4, v 99.9 3.8E-22 1.3E-26 175.4 9.3 205 204-409 28-237 (276)
78 3g06_A SSPH2 (leucine-rich rep 99.9 5.4E-21 1.8E-25 184.7 17.2 267 81-394 40-306 (622)
79 2o6q_A Variable lymphocyte rec 99.9 1.2E-21 4E-26 171.5 11.1 203 204-409 16-218 (270)
80 3goz_A Leucine-rich repeat-con 99.9 1.2E-20 4E-25 172.4 16.1 260 184-444 2-307 (362)
81 1p9a_G Platelet glycoprotein I 99.8 3.2E-21 1.1E-25 170.0 10.8 202 200-408 6-207 (290)
82 2z62_A TOLL-like receptor 4, v 99.8 1.8E-21 6.3E-26 171.0 8.7 205 180-385 28-237 (276)
83 2o6q_A Variable lymphocyte rec 99.8 5E-21 1.7E-25 167.4 11.3 202 181-385 17-218 (270)
84 3rfs_A Internalin B, repeat mo 99.8 2.2E-21 7.4E-26 169.9 7.3 189 224-421 59-247 (272)
85 3rfs_A Internalin B, repeat mo 99.8 2E-20 6.7E-25 163.8 10.9 196 224-430 37-232 (272)
86 1h6u_A Internalin H; cell adhe 99.8 1.1E-19 3.9E-24 161.8 15.7 194 202-411 39-232 (308)
87 4glp_A Monocyte differentiatio 99.8 3.2E-20 1.1E-24 165.8 9.3 203 227-435 90-308 (310)
88 2xwt_C Thyrotropin receptor; s 99.8 1.1E-20 3.6E-25 162.3 5.7 198 229-432 32-238 (239)
89 1h6u_A Internalin H; cell adhe 99.8 2.7E-19 9.2E-24 159.3 14.4 196 176-387 37-232 (308)
90 1p9a_G Platelet glycoprotein I 99.8 2E-19 6.7E-24 158.6 11.1 204 176-386 6-209 (290)
91 4glp_A Monocyte differentiatio 99.8 1.1E-19 3.7E-24 162.4 9.0 227 179-410 63-308 (310)
92 3m19_A Variable lymphocyte rec 99.8 2.4E-19 8.3E-24 154.9 9.8 181 228-411 14-194 (251)
93 2xwt_C Thyrotropin receptor; s 99.8 1E-19 3.5E-24 156.2 5.7 196 181-406 32-236 (239)
94 3m19_A Variable lymphocyte rec 99.8 1.3E-18 4.3E-23 150.4 10.2 181 204-387 14-194 (251)
95 1h6t_A Internalin B; cell adhe 99.7 2.5E-17 8.5E-22 145.3 11.1 168 203-384 45-212 (291)
96 1h6t_A Internalin B; cell adhe 99.7 6.2E-17 2.1E-21 142.7 12.3 173 225-411 43-215 (291)
97 4ezg_A Putative uncharacterize 99.7 1.5E-16 5.1E-21 131.9 10.8 146 277-430 45-191 (197)
98 2o6s_A Variable lymphocyte rec 99.7 2.8E-17 9.6E-22 137.7 6.4 163 252-421 28-190 (208)
99 4ezg_A Putative uncharacterize 99.7 2.4E-16 8.1E-21 130.6 11.5 151 252-410 44-195 (197)
100 2v9t_B SLIT homolog 2 protein 99.7 6.6E-17 2.3E-21 136.3 8.2 133 276-408 32-164 (220)
101 1m9s_A Internalin B; cell inva 99.7 1.7E-16 5.7E-21 153.3 11.9 172 201-386 40-211 (605)
102 3sb4_A Hypothetical leucine ri 99.7 9.9E-17 3.4E-21 144.4 9.1 293 79-403 23-328 (329)
103 3sb4_A Hypothetical leucine ri 99.7 1.8E-16 6E-21 142.7 9.5 283 57-355 25-328 (329)
104 1m9s_A Internalin B; cell inva 99.7 4.2E-16 1.4E-20 150.5 12.6 175 224-412 39-213 (605)
105 2v70_A SLIT-2, SLIT homolog 2 99.7 2.1E-16 7.1E-21 133.2 8.9 152 255-409 14-166 (220)
106 2xot_A Amphoterin-induced prot 99.7 3.5E-16 1.2E-20 142.6 10.6 159 278-436 41-205 (361)
107 4fs7_A Uncharacterized protein 99.6 1E-16 3.4E-21 148.1 5.9 335 69-425 59-393 (394)
108 2o6s_A Variable lymphocyte rec 99.6 1.3E-16 4.5E-21 133.5 5.7 161 229-396 29-189 (208)
109 3e6j_A Variable lymphocyte rec 99.6 9.8E-16 3.4E-20 130.0 9.2 152 254-409 21-172 (229)
110 2v9t_B SLIT homolog 2 protein 99.6 1E-15 3.5E-20 129.0 8.5 152 231-385 14-165 (220)
111 4ay9_X Follicle-stimulating ho 99.6 1.5E-16 5.1E-21 144.4 3.2 224 179-407 29-257 (350)
112 2xot_A Amphoterin-induced prot 99.6 1.2E-15 4.2E-20 139.0 9.1 176 207-385 21-202 (361)
113 3cvr_A Invasion plasmid antige 99.6 3E-15 1E-19 142.9 11.3 188 204-419 59-253 (571)
114 4ay9_X Follicle-stimulating ho 99.6 4.2E-16 1.4E-20 141.5 4.6 222 81-309 30-255 (350)
115 4fdw_A Leucine rich hypothetic 99.6 3.3E-15 1.1E-19 137.1 10.5 263 154-430 112-380 (401)
116 2v70_A SLIT-2, SLIT homolog 2 99.6 3.8E-15 1.3E-19 125.5 10.0 152 231-385 14-166 (220)
117 4fs7_A Uncharacterized protein 99.6 2.1E-15 7.1E-20 139.3 9.0 326 54-401 68-393 (394)
118 1xeu_A Internalin C; cellular 99.6 1E-15 3.4E-20 132.8 6.0 169 228-411 19-187 (263)
119 3un9_A NLR family member X1; l 99.6 1.6E-14 5.6E-19 131.2 14.2 170 228-417 72-260 (372)
120 3un9_A NLR family member X1; l 99.6 1.3E-14 4.4E-19 131.9 13.2 169 276-445 72-263 (372)
121 1xeu_A Internalin C; cellular 99.6 2.1E-15 7.3E-20 130.7 7.5 169 204-387 19-187 (263)
122 4fdw_A Leucine rich hypothetic 99.6 1E-14 3.6E-19 133.8 11.9 241 156-408 136-382 (401)
123 3cvr_A Invasion plasmid antige 99.6 5.6E-15 1.9E-19 141.0 10.3 188 180-395 59-253 (571)
124 3e6j_A Variable lymphocyte rec 99.6 8.1E-15 2.8E-19 124.3 9.1 153 230-386 21-173 (229)
125 2je0_A Acidic leucine-rich nuc 99.6 1.1E-14 3.6E-19 114.8 9.2 128 300-429 17-149 (149)
126 2je0_A Acidic leucine-rich nuc 99.5 5.1E-14 1.7E-18 110.9 9.6 129 275-405 16-149 (149)
127 2ell_A Acidic leucine-rich nuc 99.5 1.5E-14 5E-19 116.6 6.5 129 300-430 24-157 (168)
128 1dce_A Protein (RAB geranylger 99.5 5.1E-16 1.8E-20 149.0 -3.3 209 201-427 346-567 (567)
129 2ell_A Acidic leucine-rich nuc 99.5 4E-14 1.4E-18 114.0 7.2 135 274-410 22-161 (168)
130 1dce_A Protein (RAB geranylger 99.5 2.2E-15 7.6E-20 144.6 -0.4 210 176-403 345-567 (567)
131 4gt6_A Cell surface protein; l 99.5 5.9E-13 2E-17 122.8 13.8 330 74-430 56-388 (394)
132 1w8a_A SLIT protein; signaling 99.5 4.8E-14 1.7E-18 116.0 5.5 128 279-409 11-139 (192)
133 2wfh_A SLIT homolog 2 protein 99.4 1.6E-13 5.4E-18 112.8 7.2 126 279-408 13-138 (193)
134 2o6r_A Variable lymphocyte rec 99.4 2.6E-13 8.7E-18 110.3 8.1 131 278-411 9-139 (177)
135 1a9n_A U2A', U2A'; complex (nu 99.4 2E-13 7E-18 110.6 6.9 104 325-430 43-150 (176)
136 4gt6_A Cell surface protein; l 99.4 3.6E-12 1.2E-16 117.5 13.7 325 57-408 64-390 (394)
137 1w8a_A SLIT protein; signaling 99.4 5.8E-13 2E-17 109.5 7.1 130 255-387 11-141 (192)
138 1a9n_A U2A', U2A'; complex (nu 99.4 7.2E-13 2.5E-17 107.4 7.2 133 274-410 17-154 (176)
139 2o6r_A Variable lymphocyte rec 99.4 1.6E-12 5.5E-17 105.5 9.0 129 255-386 10-138 (177)
140 2wfh_A SLIT homolog 2 protein 99.3 2.8E-12 9.6E-17 105.3 8.2 127 255-385 13-139 (193)
141 1ds9_A Outer arm dynein; leuci 99.3 7.4E-14 2.5E-18 115.7 -1.4 127 295-426 43-180 (198)
142 1ds9_A Outer arm dynein; leuci 99.3 7.3E-14 2.5E-18 115.7 -2.7 132 271-409 43-185 (198)
143 4b8c_D Glucose-repressible alc 99.3 1.1E-12 3.9E-17 129.9 3.8 152 221-382 217-369 (727)
144 4b8c_D Glucose-repressible alc 99.3 4.5E-13 1.5E-17 132.7 0.7 176 245-430 217-401 (727)
145 2ra8_A Uncharacterized protein 99.3 4.1E-11 1.4E-15 107.9 13.2 146 295-444 167-330 (362)
146 4h09_A Hypothetical leucine ri 99.2 2.2E-11 7.6E-16 111.8 10.2 147 272-423 213-359 (379)
147 4h09_A Hypothetical leucine ri 99.2 1.1E-10 3.9E-15 107.0 11.4 314 57-399 46-359 (379)
148 3e4g_A ATP synthase subunit S, 99.2 4.7E-11 1.6E-15 94.2 7.5 89 349-437 62-156 (176)
149 2ra8_A Uncharacterized protein 99.1 7E-10 2.4E-14 99.9 14.0 82 347-430 251-340 (362)
150 3g39_A Variable lymphocyte rec 99.1 2.7E-11 9.1E-16 97.3 4.0 107 301-410 10-116 (170)
151 2r9u_A Variable lymphocyte rec 99.1 5E-11 1.7E-15 96.0 4.3 106 302-410 14-119 (174)
152 3e4g_A ATP synthase subunit S, 99.1 2.4E-10 8.3E-15 90.1 7.3 90 57-146 61-154 (176)
153 3g39_A Variable lymphocyte rec 99.1 1.6E-10 5.6E-15 92.7 6.3 107 277-386 10-116 (170)
154 1io0_A Tropomodulin; LRR prote 99.1 2.5E-09 8.6E-14 86.9 13.0 118 319-437 31-167 (185)
155 2r9u_A Variable lymphocyte rec 99.0 2.6E-10 8.8E-15 91.8 6.3 106 278-386 14-119 (174)
156 1io0_A Tropomodulin; LRR prote 98.9 2.4E-08 8.3E-13 81.0 11.8 116 296-411 32-166 (185)
157 2ifg_A High affinity nerve gro 98.8 2.8E-09 9.4E-14 96.5 6.1 104 303-409 11-116 (347)
158 2ifg_A High affinity nerve gro 98.7 1.3E-08 4.4E-13 92.1 6.6 105 279-386 11-117 (347)
159 1pgv_A TMD-1, tropomodulin TMD 98.2 1.9E-05 6.4E-10 63.5 12.1 111 320-430 37-167 (197)
160 1pgv_A TMD-1, tropomodulin TMD 98.2 2.3E-05 7.9E-10 63.0 12.0 114 296-409 37-170 (197)
161 3rw6_A Nuclear RNA export fact 98.1 2.2E-06 7.7E-11 72.9 3.8 80 346-427 168-258 (267)
162 3rw6_A Nuclear RNA export fact 98.0 2.8E-05 9.5E-10 66.2 8.8 83 54-138 167-258 (267)
163 3rfe_A Platelet glycoprotein I 96.5 0.0021 7.2E-08 48.1 3.7 55 352-409 12-68 (130)
164 3rfe_A Platelet glycoprotein I 93.0 0.063 2.2E-06 39.9 3.1 38 348-385 31-68 (130)
165 2lz0_A Uncharacterized protein 83.3 0.51 1.7E-05 33.0 1.8 46 69-116 8-53 (100)
166 2lz0_A Uncharacterized protein 81.1 0.45 1.6E-05 33.2 0.9 47 359-406 7-53 (100)
167 2a5y_B CED-4; apoptosis; HET: 23.2 7.8 0.00027 36.8 -2.4 39 2-41 426-464 (549)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.6e-41 Score=337.14 Aligned_cols=373 Identities=21% Similarity=0.165 Sum_probs=285.1
Q ss_pred CCCccEEEcccCCCChHHhHhccC-CCCCCeEeccCCcccChhHHHhhcCCCCCCEEeCCCCccccHHHHHHHhCCCCCc
Q 013171 56 GSSLLSVDLSGSDVTDSGLIHLKD-CSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134 (448)
Q Consensus 56 ~~~l~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 134 (448)
++++++|+++++++++.++..+.. +++|++|++++| .+....+..+..+++|++|++++|...+......+.++++|+
T Consensus 268 l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~ 346 (768)
T 3rgz_A 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN-HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLK 346 (768)
T ss_dssp CTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSS-EEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCC
T ss_pred cCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCC-cCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCC
Confidence 344555555555544444444443 367777777765 455555666777777777777777643233334477777777
Q ss_pred EEecCCccccccchhhccCCC-CCcEEeccCCCccCccccccCcC--CCCccEEEecCCCCChHHHHhccCCCCCCeEec
Q 013171 135 KLDLERCTRIHGGLVNLKGLM-KLESLNIKWCNCITDSDMKPLSG--LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211 (448)
Q Consensus 135 ~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 211 (448)
+|++++|......+..+..++ +|++|++++|. +.+..+..+.. +++|++|++++|.+.+..+..+..+++|++|++
T Consensus 347 ~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 425 (768)
T 3rgz_A 347 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNN-FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHL 425 (768)
T ss_dssp EEECCSSEEEECCCTTHHHHTTTCSEEECCSSE-EEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEEC
T ss_pred EEeCcCCccCccccHHHHhhhcCCcEEEccCCC-cCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEEC
Confidence 777777665545555666665 77777777643 33333444443 678888888888887777777888889999999
Q ss_pred CCCCCchhHHHHHhcCCCCCEEEccCccCChhhHHhhhcCCCCcEEEccCCCcChhHHHHhhCCCCCcEEeccCCccCcc
Q 013171 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291 (448)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~ 291 (448)
++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+.
T Consensus 426 s~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 505 (768)
T 3rgz_A 426 SFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 505 (768)
T ss_dssp CSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSC
T ss_pred cCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCc
Confidence 98887766677788888999999999888877777888888999999998888877777788888999999999888877
Q ss_pred hhhhhhCCCCCCEeeccCCCCCcchhhhhcCCCCCCEEeccCCCCChHHHHH----------------------------
Q 013171 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK---------------------------- 343 (448)
Q Consensus 292 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---------------------------- 343 (448)
.+..++.+++|+.|++++|.+.+..+..+..+++|+.|++++|.+....|..
T Consensus 506 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (768)
T 3rgz_A 506 IPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKK 585 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCT
T ss_pred CChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccc
Confidence 7778888889999999999888777888888889999999888554322221
Q ss_pred ------------------------------------------HhCCCCCcEeEccCCCCChhhHHHhhCCCCCCEEEcCC
Q 013171 344 ------------------------------------------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 381 (448)
Q Consensus 344 ------------------------------------------~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~ 381 (448)
+..+++|+.|++++|.+++..+..++.++.|+.|++++
T Consensus 586 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~ 665 (768)
T 3rgz_A 586 ECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGH 665 (768)
T ss_dssp TCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCS
T ss_pred cccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcC
Confidence 22356788999999999888888899999999999999
Q ss_pred CCCChHHHHhhhCCCCCCEEeeCCCCCChhHHHhhhcCCCCCeecccCC
Q 013171 382 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430 (448)
Q Consensus 382 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~ 430 (448)
|.+++..|..+.++++|+.|++++|++++.+|..+..+++|+.|++++|
T Consensus 666 N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N 714 (768)
T 3rgz_A 666 NDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 714 (768)
T ss_dssp SCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSS
T ss_pred CccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCC
Confidence 9999888999999999999999999999888999999999999999998
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.4e-39 Score=326.38 Aligned_cols=369 Identities=21% Similarity=0.226 Sum_probs=282.9
Q ss_pred cCCCccEEEcccCCCChHHhHhccCCCCCCeEeccCCcccChhHHHhhcCCCCCCEEeCCCCccccHHHHHHHhCCCCCc
Q 013171 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134 (448)
Q Consensus 55 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 134 (448)
.++++++|+++++.+++..+ +..+++|++|++++| .+....+. +..+++|++|++++|.. .+..+..+.++++|+
T Consensus 176 ~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n-~l~~~~~~-l~~l~~L~~L~Ls~n~l-~~~~~~~l~~l~~L~ 250 (768)
T 3rgz_A 176 GCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSN-NFSTGIPF-LGDCSALQHLDISGNKL-SGDFSRAISTCTELK 250 (768)
T ss_dssp CCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSS-CCCSCCCB-CTTCCSCCEEECCSSCC-CSCHHHHTTTCSSCC
T ss_pred cCCCCCEEECCCCcccccCC--cccCCcCCEEECcCC-cCCCCCcc-cccCCCCCEEECcCCcC-CCcccHHHhcCCCCC
Confidence 34445555555444433221 245666666666665 33333333 66777777777777763 445667777777777
Q ss_pred EEecCCccccccchhhccCCCCCcEEeccCCCccCccccccCcC-CCCccEEEecCCCCChHHHHhccCCCCCCeEecCC
Q 013171 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG-LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213 (448)
Q Consensus 135 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 213 (448)
+|++++|......+.. .+++|++|++.+|. +.+..+..+.. +++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 251 ~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~-l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~ 327 (768)
T 3rgz_A 251 LLNISSNQFVGPIPPL--PLKSLQYLSLAENK-FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 327 (768)
T ss_dssp EEECCSSCCEESCCCC--CCTTCCEEECCSSE-EEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCS
T ss_pred EEECCCCcccCccCcc--ccCCCCEEECcCCc-cCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCC
Confidence 7777776543332222 67777777777743 33344445544 48888888888888776777788888888888888
Q ss_pred CCCchhHH-HHHhcCCCCCEEEccCccCChhhHHhhhcCC-CCcEEEccCCCcChhHHHHhhC--CCCCcEEeccCCccC
Q 013171 214 CPVTAACL-DSLSALGSLFYLNLNRCQLSDDGCEKFSKIG-SLKVLNLGFNEITDECLVHLKG--LTNLESLNLDSCGIG 289 (448)
Q Consensus 214 ~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~l~~--~~~L~~l~l~~~~~~ 289 (448)
|.+.+..+ ..+..+++|++|++++|.+.+..+..+..++ +|+.|++++|.+++..+..+.. +++|+.|++++|.+.
T Consensus 328 n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 407 (768)
T 3rgz_A 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 407 (768)
T ss_dssp SEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEE
T ss_pred CcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccc
Confidence 87763333 4478888888888888887766666666665 8888888888877655555554 778999999999888
Q ss_pred cchhhhhhCCCCCCEeeccCCCCCcchhhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEccCCCCChhhHHHhh
Q 013171 290 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 369 (448)
Q Consensus 290 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~ 369 (448)
+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+.
T Consensus 408 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~ 487 (768)
T 3rgz_A 408 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS 487 (768)
T ss_dssp EECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG
T ss_pred cccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHh
Confidence 77788888999999999999998877788889999999999999999887788888999999999999999987788889
Q ss_pred CCCCCCEEEcCCCCCChHHHHhhhCCCCCCEEeeCCCCCChhHHHhhhcCCCCCeecccCCC
Q 013171 370 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 431 (448)
Q Consensus 370 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~ 431 (448)
.+++|+.|++++|++.+..|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|+
T Consensus 488 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 488 NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred cCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence 99999999999999998888899999999999999999998889999999999999999994
No 3
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.7e-39 Score=316.56 Aligned_cols=259 Identities=24% Similarity=0.260 Sum_probs=128.1
Q ss_pred cCCCCccEEEecCCCCChHHHHhccCCCCCCeEecCCCCCchhHHHHHhcCCCCCEEEccCcc-----------------
Q 013171 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ----------------- 239 (448)
Q Consensus 177 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~----------------- 239 (448)
..+++|++|++++|.+. ..+..+..+++|++|++++|.+....+..+..+++|+.|++++|.
T Consensus 275 ~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 353 (606)
T 3t6q_A 275 HCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR 353 (606)
T ss_dssp TTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCC
T ss_pred ccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCC
Confidence 33444445555444443 222234444445555555444443333334444444444444443
Q ss_pred --------CChhh--HHhhhcCCCCcEEEccCCCcChhHHHHhhCCCCCcEEeccCCccCcchhh-hhhCCCCCCEeecc
Q 013171 240 --------LSDDG--CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV-NLTGLCNLKCLELS 308 (448)
Q Consensus 240 --------~~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~-~l~~~~~L~~L~l~ 308 (448)
+.... +..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+....+. .+..+++|+.|+++
T Consensus 354 ~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 433 (606)
T 3t6q_A 354 ELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLS 433 (606)
T ss_dssp EEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECT
T ss_pred EEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECC
Confidence 33222 22333444444444444443333333344444444444444444322221 23444555555555
Q ss_pred CCCCCcchhhhhcCCCCCCEEeccCCCCChHH---HHHHhCCCCCcEeEccCCCCChhhHHHhhCCCCCCEEEcCCCCCC
Q 013171 309 DTQVGSSGLRHLSGLTNLESINLSFTGISDGS---LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385 (448)
Q Consensus 309 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~ 385 (448)
+|.+....+..+..+++|+.|++++|.+.+.. +..+..+++|+.|++++|.+++..+..+..+++|+.|++++|+++
T Consensus 434 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 513 (606)
T 3t6q_A 434 HSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLT 513 (606)
T ss_dssp TCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccC
Confidence 55554444444555555555555555554311 123445556666666666555554555556666666666666666
Q ss_pred hHHHHhhhCCCCCCEEeeCCCCCChhHHHhhhcCCCCCeecccCCCCCCHHH
Q 013171 386 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT 437 (448)
Q Consensus 386 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~l~~~~ 437 (448)
+..+..+.+++.| .|++++|++++..+..+..+++|+.+++++||...+..
T Consensus 514 ~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 514 SSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp GGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred cCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 6555566666666 66666666665555555666666666666665444443
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=7.5e-39 Score=314.39 Aligned_cols=257 Identities=22% Similarity=0.266 Sum_probs=206.1
Q ss_pred ccCCCCCcEEeccCCCccCccccccCcCCCCccEEEecCCCCChHHHHhc-------------------------cCCCC
Q 013171 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL-------------------------KGLQK 205 (448)
Q Consensus 151 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-------------------------~~~~~ 205 (448)
+..+++|++|+++++. ++ ..+..+..+++|++|++++|.+.+..+..+ ..+++
T Consensus 274 ~~~l~~L~~L~l~~n~-l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 351 (606)
T 3t6q_A 274 FHCFSGLQELDLTATH-LS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLEN 351 (606)
T ss_dssp TTTCTTCSEEECTTSC-CS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTT
T ss_pred hccccCCCEEeccCCc-cC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCc
Confidence 4556677777777643 33 234456666777777777766665444333 44555
Q ss_pred CCeEecCCCCCchhH--HHHHhcCCCCCEEEccCccCChhhHHhhhcCCCCcEEEccCCCcChhHHH-HhhCCCCCcEEe
Q 013171 206 LTLLNLEGCPVTAAC--LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV-HLKGLTNLESLN 282 (448)
Q Consensus 206 L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~l~ 282 (448)
|++|+++++.+.... +..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+. .+..+++|+.|+
T Consensus 352 L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 431 (606)
T 3t6q_A 352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLN 431 (606)
T ss_dssp CCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEE
T ss_pred CCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEE
Confidence 666666665554432 44577889999999999998877777888999999999999988754433 478899999999
Q ss_pred ccCCccCcchhhhhhCCCCCCEeeccCCCCCcch---hhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEccCCC
Q 013171 283 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG---LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359 (448)
Q Consensus 283 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~---~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 359 (448)
+++|.+....+..+..+++|+.|++++|.+.+.. +..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.
T Consensus 432 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 511 (606)
T 3t6q_A 432 LSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR 511 (606)
T ss_dssp CTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCc
Confidence 9999988777788889999999999999887632 2457889999999999999998888889999999999999999
Q ss_pred CChhhHHHhhCCCCCCEEEcCCCCCChHHHHhhhCCCCCCEEeeCCCCCCh
Q 013171 360 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 410 (448)
Q Consensus 360 l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 410 (448)
+++..+..+..++.| .|++++|++++..+..+..+++|+.|++++|++..
T Consensus 512 l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 561 (606)
T 3t6q_A 512 LTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561 (606)
T ss_dssp CCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred cCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccc
Confidence 999888899999999 99999999998888888889999999999998763
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=9.3e-39 Score=313.70 Aligned_cols=386 Identities=20% Similarity=0.181 Sum_probs=220.4
Q ss_pred CCccEEEcccCCCChHHhHhccCCCCCCeEeccCCcccChhHHHhhcCCCCCCEEeCCCCccccHHHHHHHhCCCCCcEE
Q 013171 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136 (448)
Q Consensus 57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 136 (448)
+++++|+++++++++..+..++++++|++|++++| .+....+..|.++++|++|++++|.. ....+.++.++++|++|
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~i~~~~~~~l~~L~~L~Ls~n~l-~~~~p~~~~~l~~L~~L 109 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRC-EIETIEDKAWHGLHHLSNLILTGNPI-QSFSPGSFSGLTSLENL 109 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCC-CCCCTTSSTTCTTCCEE
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCC-cccccCHHHhhchhhcCEeECCCCcc-cccChhhcCCcccCCEE
Confidence 56677777776666655556666777777777665 55555566666667777777776653 33445566667777777
Q ss_pred ecCCccccccchhhccCCCCCcEEeccCCCccCccccccCcCCCCccEEEecCCCCChHHHHhccCC-------------
Q 013171 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL------------- 203 (448)
Q Consensus 137 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~------------- 203 (448)
++++|......+..+..+++|++|++++|.......+..+.++++|++|++++|.+.+..+..+..+
T Consensus 110 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~ 189 (606)
T 3vq2_A 110 VAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMS 189 (606)
T ss_dssp ECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECT
T ss_pred EccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeecc
Confidence 7766654444444566666677777766443322334556666666666666665543222111111
Q ss_pred --------------CCCCeEecCCCCCch-hHHH----------------------------------------------
Q 013171 204 --------------QKLTLLNLEGCPVTA-ACLD---------------------------------------------- 222 (448)
Q Consensus 204 --------------~~L~~L~l~~~~~~~-~~~~---------------------------------------------- 222 (448)
.+|+.|+++++.+.. ..+.
T Consensus 190 ~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~ 269 (606)
T 3vq2_A 190 LNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLT 269 (606)
T ss_dssp TCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEEC
T ss_pred CCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecc
Confidence 123333333332210 0010
Q ss_pred --------------------------------HHhcCCCCCEEEccCccCChhh-------------------HHhhhcC
Q 013171 223 --------------------------------SLSALGSLFYLNLNRCQLSDDG-------------------CEKFSKI 251 (448)
Q Consensus 223 --------------------------------~~~~~~~L~~L~l~~~~~~~~~-------------------~~~l~~~ 251 (448)
.+..+++|+.|++++|.+.... ...+..+
T Consensus 270 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l 349 (606)
T 3vq2_A 270 YTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVAL 349 (606)
T ss_dssp CCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCEECCCCCC
T ss_pred ccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCcccccCCCCccceeeccCCcCccchhhccC
Confidence 1111122222333222221000 0012233
Q ss_pred CCCcEEEccCCCcChhH--HHHhhC-----------------------CCCCcEEeccCCccCcchh-hhhhCCCCCCEe
Q 013171 252 GSLKVLNLGFNEITDEC--LVHLKG-----------------------LTNLESLNLDSCGIGDEGL-VNLTGLCNLKCL 305 (448)
Q Consensus 252 ~~L~~L~l~~~~~~~~~--~~~l~~-----------------------~~~L~~l~l~~~~~~~~~~-~~l~~~~~L~~L 305 (448)
++|+.|++++|.+++.. +..+.. +++|+.|++++|.+....+ ..+..+++|+.|
T Consensus 350 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 429 (606)
T 3vq2_A 350 PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYL 429 (606)
T ss_dssp TTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEE
T ss_pred CCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEE
Confidence 44555555544443221 233344 4455555555554443333 345556666666
Q ss_pred eccCCCCCcchhhhhcCCCCCCEEeccCCCCChH-HHHHHhCCCCCcEeEccCCCCChhhHHHhhCCCCCCEEEcCCCCC
Q 013171 306 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG-SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 384 (448)
Q Consensus 306 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~ 384 (448)
++++|.+....+..+..+++|+.|++++|.+.+. .+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++
T Consensus 430 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 509 (606)
T 3vq2_A 430 DISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL 509 (606)
T ss_dssp ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred ECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcC
Confidence 6666666555555666677777777777766552 345566777788888877777776666677778888888888887
Q ss_pred ChHHHHhhhCCCCCCEEeeCCCCCChhHHHhhhcCC-CCCeecccCCCCCCHHHHHHHHhhh
Q 013171 385 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS-SLTLLNLSQNCNLTDKTLELISGIL 445 (448)
Q Consensus 385 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~l~l~~~~~l~~~~~~~l~~~~ 445 (448)
++..+..+..+++|+.|++++|+++.. |..+..++ +|+.+++++||...+.....+.++.
T Consensus 510 ~~~~~~~~~~l~~L~~L~l~~N~l~~~-p~~~~~l~~~L~~l~l~~N~~~c~c~~~~~~~~l 570 (606)
T 3vq2_A 510 LFLDSSHYNQLYSLSTLDCSFNRIETS-KGILQHFPKSLAFFNLTNNSVACICEHQKFLQWV 570 (606)
T ss_dssp SCEEGGGTTTCTTCCEEECTTSCCCCE-ESCGGGSCTTCCEEECCSCCCCCSSTTHHHHTTT
T ss_pred CCcCHHHccCCCcCCEEECCCCcCccc-CHhHhhhcccCcEEEccCCCcccCCccHHHHHHH
Confidence 777677777788888888888887754 44566776 4888888888766655555554443
No 6
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.4e-36 Score=294.72 Aligned_cols=376 Identities=22% Similarity=0.198 Sum_probs=241.1
Q ss_pred CCccEEEcccCCCChHHhHhccCCCCCCeEeccCCcccChhHHHhhcCCCCCCEEeCCCCccccHHHHHHHhCCCCCcEE
Q 013171 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136 (448)
Q Consensus 57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 136 (448)
+++++|+++++++++..+..++.+++|++|++++| .+....+..|..+++|++|++++|.. ....+..++++++|++|
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L 103 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDNHL-SSLSSSWFGPLSSLKYL 103 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCC-CSCCHHHHTTCTTCCEE
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCC-CcCccChhhccccccCCEEECCCCcc-CccCHHHhccCCCCcEE
Confidence 57888888888777666667778888888888876 56666667777788888888887764 45556667788888888
Q ss_pred ecCCccccc-cchhhccCCCCCcEEeccCCCccCccccccCcCCCCccEEEecCCCCChHHHHhccCCCCCCeEecCCCC
Q 013171 137 DLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215 (448)
Q Consensus 137 ~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 215 (448)
++++|.... ..+..+..+++|++|++++|..........+..+++|++|++++|.+.+..+..+..+++|++|++.++.
T Consensus 104 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 104 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183 (549)
T ss_dssp ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB
T ss_pred ECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc
Confidence 887765443 2345567777888888877654554444566777777777777776665555555555555555555444
Q ss_pred CchhHHHHHhcCCCCCEEEccCccCCh-----------------------------------------------------
Q 013171 216 VTAACLDSLSALGSLFYLNLNRCQLSD----------------------------------------------------- 242 (448)
Q Consensus 216 ~~~~~~~~~~~~~~L~~L~l~~~~~~~----------------------------------------------------- 242 (448)
........+..+++|+.|++++|.+..
T Consensus 184 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~ 263 (549)
T 2z81_A 184 SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTL 263 (549)
T ss_dssp STTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEE
T ss_pred ccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccc
Confidence 433222222334444444444443322
Q ss_pred -------------------------------------------------------------hhHHhhhcCCCCcEEEccC
Q 013171 243 -------------------------------------------------------------DGCEKFSKIGSLKVLNLGF 261 (448)
Q Consensus 243 -------------------------------------------------------------~~~~~l~~~~~L~~L~l~~ 261 (448)
.....+..+++|+.|++++
T Consensus 264 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~ 343 (549)
T 2z81_A 264 NGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSE 343 (549)
T ss_dssp ECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCS
T ss_pred cccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccC
Confidence 1111123455666666666
Q ss_pred CCcChhHHHH---hhCCCCCcEEeccCCccCcchh--hhhhCCCCCCEeeccCCCCCcchhhhhcCCCCCCEEeccCCCC
Q 013171 262 NEITDECLVH---LKGLTNLESLNLDSCGIGDEGL--VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI 336 (448)
Q Consensus 262 ~~~~~~~~~~---l~~~~~L~~l~l~~~~~~~~~~--~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 336 (448)
|.+.+..+.. +..+++|+.|++++|.+..... ..+..+++|+.|++++|.+.. .+..+..+++|++|++++|.+
T Consensus 344 N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~~~~L~~L~Ls~N~l 422 (549)
T 2z81_A 344 NLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP-MPDSCQWPEKMRFLNLSSTGI 422 (549)
T ss_dssp SCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCC-CCSCCCCCTTCCEEECTTSCC
T ss_pred CccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCcc-CChhhcccccccEEECCCCCc
Confidence 6665543322 3455666666666666554322 335556666666666666553 334445556666666666655
Q ss_pred ChHHHHHHhCCCCCcEeEccCCCCChhhHHHhhCCCCCCEEEcCCCCCChHHHHhhhCCCCCCEEeeCCCCCChhHHHhh
Q 013171 337 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416 (448)
Q Consensus 337 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 416 (448)
..... . -.++|+.|++++|.+++. ...+++|++|++++|+++.. +. ...+++|++|++++|++++..+..+
T Consensus 423 ~~l~~-~--~~~~L~~L~Ls~N~l~~~----~~~l~~L~~L~Ls~N~l~~i-p~-~~~l~~L~~L~Ls~N~l~~~~~~~~ 493 (549)
T 2z81_A 423 RVVKT-C--IPQTLEVLDVSNNNLDSF----SLFLPRLQELYISRNKLKTL-PD-ASLFPVLLVMKISRNQLKSVPDGIF 493 (549)
T ss_dssp SCCCT-T--SCTTCSEEECCSSCCSCC----CCCCTTCCEEECCSSCCSSC-CC-GGGCTTCCEEECCSSCCCCCCTTGG
T ss_pred ccccc-h--hcCCceEEECCCCChhhh----cccCChhcEEECCCCccCcC-CC-cccCccCCEEecCCCccCCcCHHHH
Confidence 43211 1 124677777777766653 24789999999999998854 33 4568999999999999999888889
Q ss_pred hcCCCCCeecccCCCCCCHHH-HHHHHhh
Q 013171 417 KDLSSLTLLNLSQNCNLTDKT-LELISGI 444 (448)
Q Consensus 417 ~~~~~L~~l~l~~~~~l~~~~-~~~l~~~ 444 (448)
..+++|+.|++++|+...+.. .+.+..+
T Consensus 494 ~~l~~L~~L~l~~N~~~~~~~~~~~l~~~ 522 (549)
T 2z81_A 494 DRLTSLQKIWLHTNPWDCSCPRIDYLSRW 522 (549)
T ss_dssp GGCTTCCEEECCSSCBCCCHHHHHHHHHH
T ss_pred hcCcccCEEEecCCCccCCCccHHHHHHH
Confidence 999999999999998766665 3444333
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4.4e-39 Score=315.59 Aligned_cols=376 Identities=15% Similarity=0.166 Sum_probs=216.0
Q ss_pred ChHH---HHHHHhcCCCccEEEcccCCCChHHhHhccCCCCCCeEeccCCcc----------------------------
Q 013171 45 NDKW---MDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQ---------------------------- 93 (448)
Q Consensus 45 ~~~~---~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~---------------------------- 93 (448)
.+.| .++.|..-.+|+.|+++++.+++.++..++++++|++|+|++|..
T Consensus 66 ~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l 145 (636)
T 4eco_A 66 LDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHY 145 (636)
T ss_dssp GGGTTCCTTEEECTTCCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHH
T ss_pred cccccCCCCeEEcCCCCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhH
Confidence 3456 555554446899999999888888888889999999999987621
Q ss_pred -------------------------------------------------cChhHHHhhcCCCCCCEEeCCCCccccHH--
Q 013171 94 -------------------------------------------------ISDGGLEHLRGLSNLTSLSFRRNNAITAQ-- 122 (448)
Q Consensus 94 -------------------------------------------------~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-- 122 (448)
+.. .|..++++++|++|++++|.+ .+.
T Consensus 146 ~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l-~~~~~ 223 (636)
T 4eco_A 146 QKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPF-VAENI 223 (636)
T ss_dssp HHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCC-CGGGB
T ss_pred HHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCcc-ccccc
Confidence 112 345677888888888888874 342
Q ss_pred ---------------HHHHHh--CCCCCcEEecCCccccccchhhccCCCCCcEEeccCCCccCc-cccccCcCC-----
Q 013171 123 ---------------GMKAFA--GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD-SDMKPLSGL----- 179 (448)
Q Consensus 123 ---------------~~~~~~--~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~----- 179 (448)
.|..++ ++++|++|++++|......+..+..+++|++|++++|..+++ ..+..+..+
T Consensus 224 ~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~ 303 (636)
T 4eco_A 224 CEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPV 303 (636)
T ss_dssp SSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGG
T ss_pred cccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhcccc
Confidence 566666 888888888888776667777788888888888887653554 444444443
Q ss_pred -CCccEEEecCCCCChHHHH--hccCCCCCCeEecCCCCCchhHHHHHhcCCCCCEEEccCccCChhhHHhhhcCCC-Cc
Q 013171 180 -TNLKSLQISCSKVTDSGIA--YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS-LK 255 (448)
Q Consensus 180 -~~L~~L~l~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~-L~ 255 (448)
++|++|++++|.++ ..+. .+..+++|++|++++|.+.+..+ .+..+++|+.|++++|.+. ..+..+..+++ |+
T Consensus 304 l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~ 380 (636)
T 4eco_A 304 GEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVE 380 (636)
T ss_dssp GGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCC
T ss_pred CCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCc
Confidence 77777777777776 3444 56777777777777776663333 4555555666666555544 23333444555 55
Q ss_pred EEEccCCCcC-------------------------hhHHHHhh-------CCCCCcEEeccCCccCcchhhhhhCCCCCC
Q 013171 256 VLNLGFNEIT-------------------------DECLVHLK-------GLTNLESLNLDSCGIGDEGLVNLTGLCNLK 303 (448)
Q Consensus 256 ~L~l~~~~~~-------------------------~~~~~~l~-------~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~ 303 (448)
.|++++|.++ +..+..+. .+++|+.|++++|.+.......+..+++|+
T Consensus 381 ~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~ 460 (636)
T 4eco_A 381 NLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLS 460 (636)
T ss_dssp EEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCS
T ss_pred EEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCC
Confidence 5555555544 32222222 333444444444444432222233344555
Q ss_pred EeeccCCCCCcchhhhhcCC-------CCCCEEeccCCCCChHHHHHHh--CCCCCcEeEccCCCCChhhHHHhhCCCCC
Q 013171 304 CLELSDTQVGSSGLRHLSGL-------TNLESINLSFTGISDGSLRKLA--GLSSLKSLNLDARQITDTGLAALTSLTGL 374 (448)
Q Consensus 304 ~L~l~~~~~~~~~~~~l~~~-------~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~l~~~~~~~l~~~~~L 374 (448)
.|++++|.+.......+... ++|+.|++++|.+.. .+..+. .+++|+.|++++|.+++ .+..+..+++|
T Consensus 461 ~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L 538 (636)
T 4eco_A 461 SINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTL 538 (636)
T ss_dssp EEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCB-CCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSC
T ss_pred EEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCc-cChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCC
Confidence 55555554442222122111 155555555555443 223332 45555555555555554 23444455555
Q ss_pred CEEEc------CCCCCChHHHHhhhCCCCCCEEeeCCCCCChhHHHhhhcCCCCCeecccCC
Q 013171 375 THLDL------FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430 (448)
Q Consensus 375 ~~L~l------~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~ 430 (448)
+.|++ ++|.+.+..|..+..+++|++|++++|.+... |..+. ++|+.|++++|
T Consensus 539 ~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~i-p~~~~--~~L~~L~Ls~N 597 (636)
T 4eco_A 539 KGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKV-NEKIT--PNISVLDIKDN 597 (636)
T ss_dssp CEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBC-CSCCC--TTCCEEECCSC
T ss_pred CEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCcc-CHhHh--CcCCEEECcCC
Confidence 55555 23444444445555555555555555555322 33322 45555555555
No 8
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-37 Score=304.15 Aligned_cols=184 Identities=22% Similarity=0.222 Sum_probs=149.6
Q ss_pred cCCCCcEEEccCCCcChhH--HHHhhCCCCCcEEeccCCccCcchhhhhhCCCCCCEeeccCCCCCcchh-hhhcCCCCC
Q 013171 250 KIGSLKVLNLGFNEITDEC--LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL-RHLSGLTNL 326 (448)
Q Consensus 250 ~~~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L 326 (448)
.+++|+.|++++|.++... +..+..+++|+.|++++|.+...... +..+++|+.|++.+|.+....+ ..+..+++|
T Consensus 345 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 423 (570)
T 2z63_A 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423 (570)
T ss_dssp BCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTC
T ss_pred cCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCC
Confidence 4567777777777765432 45567788888888888877654443 7778889999998887766443 456788999
Q ss_pred CEEeccCCCCChHHHHHHhCCCCCcEeEccCCCCCh-hhHHHhhCCCCCCEEEcCCCCCChHHHHhhhCCCCCCEEeeCC
Q 013171 327 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD-TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 405 (448)
Q Consensus 327 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 405 (448)
+.|++++|.+....+..+..+++|+.|++++|.+.+ ..+..+..+++|+.|++++|++++..+..+..+++|++|++++
T Consensus 424 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 503 (570)
T 2z63_A 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503 (570)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCC
Confidence 999999998887777778889999999999998873 4456778899999999999999988788899999999999999
Q ss_pred CCCChhHHHhhhcCCCCCeecccCCCCCC
Q 013171 406 GGLTDAGVKHIKDLSSLTLLNLSQNCNLT 434 (448)
Q Consensus 406 ~~~~~~~~~~l~~~~~L~~l~l~~~~~l~ 434 (448)
|.+++..+..+.++++|+.|++++|+.-.
T Consensus 504 n~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 504 NQLKSVPDGIFDRLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CcCCCCCHHHhhcccCCcEEEecCCcccC
Confidence 99998877888999999999999996443
No 9
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=9.8e-37 Score=288.90 Aligned_cols=360 Identities=21% Similarity=0.188 Sum_probs=215.2
Q ss_pred CCCccEEEcccCCCChHHhHhccCCCCCCeEeccCCcccChhHHHhhcCCCCCCEEeCCCCccccHHHHHHHhCCCCCcE
Q 013171 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (448)
Q Consensus 56 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 135 (448)
++++++|+++++.+++..+..++++++|++|++++|.......+..|..+++|++|++++|.+ ....+..+.++++|++
T Consensus 29 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~ 107 (455)
T 3v47_A 29 PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF-LQLETGAFNGLANLEV 107 (455)
T ss_dssp CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTT-CEECTTTTTTCTTCCE
T ss_pred CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCcc-CccChhhccCcccCCE
Confidence 367888888888888777777888888888888887433344566678888888888888874 4445667788888888
Q ss_pred EecCCccccccchhh--ccCCCCCcEEeccCCCccCcccccc-CcCCCCccEEEecCCCCChHHHHhccCC--CCCCeEe
Q 013171 136 LDLERCTRIHGGLVN--LKGLMKLESLNIKWCNCITDSDMKP-LSGLTNLKSLQISCSKVTDSGIAYLKGL--QKLTLLN 210 (448)
Q Consensus 136 L~l~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~~--~~L~~L~ 210 (448)
|++++|......+.. +..+++|++|++++|. +....+.. +..+++|++|++++|.+.+..+..+..+ .+++.++
T Consensus 108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~ 186 (455)
T 3v47_A 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLR 186 (455)
T ss_dssp EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEE
T ss_pred EeCCCCCCCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccc
Confidence 888887654433333 7778888888888754 33333333 6677888888888877766555555443 5677777
Q ss_pred cCCCCCchhHHH--------HHhcCCCCCEEEccCccCChhhHHhhhc---CCCCcEEEccCCCcChhHHHHhhCCCCCc
Q 013171 211 LEGCPVTAACLD--------SLSALGSLFYLNLNRCQLSDDGCEKFSK---IGSLKVLNLGFNEITDECLVHLKGLTNLE 279 (448)
Q Consensus 211 l~~~~~~~~~~~--------~~~~~~~L~~L~l~~~~~~~~~~~~l~~---~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 279 (448)
++++.+...... .+..+++|+.|++++|.+....+..+.. .++|+.|+++++...+....
T Consensus 187 l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--------- 257 (455)
T 3v47_A 187 LSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG--------- 257 (455)
T ss_dssp CTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT---------
T ss_pred cccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccc---------
Confidence 777755442111 1223466777777777766655555433 25667777666543221000
Q ss_pred EEeccCCccCcchhhhhh--CCCCCCEeeccCCCCCcchhhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEccC
Q 013171 280 SLNLDSCGIGDEGLVNLT--GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357 (448)
Q Consensus 280 ~l~l~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 357 (448)
...+.......+. ..++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++
T Consensus 258 -----~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 332 (455)
T 3v47_A 258 -----HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQ 332 (455)
T ss_dssp -----CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred -----hhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCC
Confidence 0000000001111 124555566655555554455555555666666665555554444555555666666666
Q ss_pred CCCChhhHHHhhCCCCCCEEEcCCCCCChHHHHhhhCCCCCCEEeeCCCCCChhHHHhhhcCCCCCeecccCCC
Q 013171 358 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 431 (448)
Q Consensus 358 ~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~ 431 (448)
|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|+
T Consensus 333 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 333 NFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp SCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCC
Confidence 55555444555555666666666665555545555555666666666665555444445555666666666554
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.4e-37 Score=313.35 Aligned_cols=378 Identities=21% Similarity=0.189 Sum_probs=247.7
Q ss_pred cCCCccEEEcccCCCChHHhHhccCCCCCCeEeccCCcccChhHHHhhcCCCCCCEEeCCCCccccHHHHHHHhCCCCCc
Q 013171 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134 (448)
Q Consensus 55 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 134 (448)
.++++++|++++|.+++..+..++.+++|++|++++|.......+..|.++++|++|++++|.+ ....+.+|.++++|+
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l-~~~~p~~~~~l~~L~ 100 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKI-YFLHPDAFQGLFHLF 100 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCC-CEECTTSSCSCSSCC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcC-cccCHhHccCCcccC
Confidence 4578999999999998888888999999999999998656666678899999999999999974 455678889999999
Q ss_pred EEecCCccccccchhh--ccCCCCCcEEeccCCCccCccccccCcCCCCccEEEecCCCCChHHHHhccCC--CC-----
Q 013171 135 KLDLERCTRIHGGLVN--LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL--QK----- 205 (448)
Q Consensus 135 ~L~l~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~--~~----- 205 (448)
+|++++|......+.. +..+++|++|++++|..........+.++++|++|++++|.+.+..+..+..+ ++
T Consensus 101 ~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~ 180 (844)
T 3j0a_A 101 ELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS 180 (844)
T ss_dssp CEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCE
T ss_pred EeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEE
Confidence 9999998665544443 88899999999998654443334568889999999999887765333332222 22
Q ss_pred -------------------------CCeEecCCCCCchhHHHHHh-----------------------------------
Q 013171 206 -------------------------LTLLNLEGCPVTAACLDSLS----------------------------------- 225 (448)
Q Consensus 206 -------------------------L~~L~l~~~~~~~~~~~~~~----------------------------------- 225 (448)
|+.|+++++.+....+..+.
T Consensus 181 L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f 260 (844)
T 3j0a_A 181 LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTF 260 (844)
T ss_dssp ECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTT
T ss_pred CCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhh
Confidence 66666666543321111111
Q ss_pred -c--CCCCCEEEccCccCChhhHHhhhcCCCCcEEEccCCCcChhHHHHhhCCCCCcEEeccCCccCcchhhhhhCCCCC
Q 013171 226 -A--LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302 (448)
Q Consensus 226 -~--~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L 302 (448)
. .++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|
T Consensus 261 ~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 340 (844)
T 3j0a_A 261 AGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKV 340 (844)
T ss_dssp TTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTC
T ss_pred hccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCC
Confidence 1 2567777777777666555666777778888887777776656667777788888888777766666667777788
Q ss_pred CEeeccCCCCCcchhhhhcCCCCCCEEeccCCCCChHH----------------------------------------HH
Q 013171 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS----------------------------------------LR 342 (448)
Q Consensus 303 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~----------------------------------------~~ 342 (448)
+.|++++|.+....+..+..+++|+.|++++|.+.... ..
T Consensus 341 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~ 420 (844)
T 3j0a_A 341 AYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILY 420 (844)
T ss_dssp CEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHH
T ss_pred CEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhh
Confidence 88888887776665556677777777777777654311 11
Q ss_pred HHhCCCCCcEeEccCCCCChhhHH-HhhCCCCCCEEEcCCCCCCh-----HHHHhhhCCCCCCEEeeCCCCCChhHHHhh
Q 013171 343 KLAGLSSLKSLNLDARQITDTGLA-ALTSLTGLTHLDLFGARITD-----SGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416 (448)
Q Consensus 343 ~~~~~~~L~~L~l~~~~l~~~~~~-~l~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 416 (448)
.+..+++|+.|++++|.++..... .+..+++|+.|++++|.+.. ..+..+..+++|+.|++++|.+++..+..+
T Consensus 421 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 500 (844)
T 3j0a_A 421 FLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVF 500 (844)
T ss_dssp HHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSS
T ss_pred hhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHc
Confidence 122333444444444433321110 11123333333333333321 111234455666666666666666655566
Q ss_pred hcCCCCCeecccCCCCCC
Q 013171 417 KDLSSLTLLNLSQNCNLT 434 (448)
Q Consensus 417 ~~~~~L~~l~l~~~~~l~ 434 (448)
..+++|+.|++++| .++
T Consensus 501 ~~l~~L~~L~Ls~N-~l~ 517 (844)
T 3j0a_A 501 SHLTALRGLSLNSN-RLT 517 (844)
T ss_dssp SSCCSCSEEEEESC-CCS
T ss_pred cchhhhheeECCCC-CCC
Confidence 66777777777777 444
No 11
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=7.5e-36 Score=296.91 Aligned_cols=326 Identities=23% Similarity=0.247 Sum_probs=183.7
Q ss_pred CCEEeCCCCccccHHHHHHHhCCCCCcEEecCCccccccchhhccCCCCCcEEeccCCCcc--------CccccccCcCC
Q 013171 108 LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCI--------TDSDMKPLSGL 179 (448)
Q Consensus 108 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~--------~~~~~~~~~~~ 179 (448)
|++|++++|.. ....+..+..+++|++|++++|......+..+..+++|++|++.++... .......+..+
T Consensus 250 L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l 328 (680)
T 1ziw_A 250 LTMLDLSYNNL-NVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL 328 (680)
T ss_dssp CCEEECTTSCC-CEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTC
T ss_pred CCEEECCCCCc-CccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccC
Confidence 66666666543 2333445556666666666665444444445555556666655542111 01111134455
Q ss_pred CCccEEEecCCCCChHHHHhccCCCCCCeEecCCC----------------------------CCchhHHHHHhcCCCCC
Q 013171 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC----------------------------PVTAACLDSLSALGSLF 231 (448)
Q Consensus 180 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~----------------------------~~~~~~~~~~~~~~~L~ 231 (448)
++|++|++++|.+.+..+..+..+++|++|++++| .+....+..+..+++|+
T Consensus 329 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 408 (680)
T 1ziw_A 329 KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLE 408 (680)
T ss_dssp TTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCC
Confidence 56666666665555544444555555555555544 33333333444455555
Q ss_pred EEEccCccCChhhH-HhhhcCCCCcEEEccCCCcChhHHHHhhCCCCCcEEeccCCccC--cchhhhhhCCCCCCEeecc
Q 013171 232 YLNLNRCQLSDDGC-EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG--DEGLVNLTGLCNLKCLELS 308 (448)
Q Consensus 232 ~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~--~~~~~~l~~~~~L~~L~l~ 308 (448)
.|++++|.+....+ ..+..+++|+.|++++|.+....+..+..+++|+.+++.++.+. ...+..+..+++|+.|+++
T Consensus 409 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls 488 (680)
T 1ziw_A 409 VLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLS 488 (680)
T ss_dssp EEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECC
T ss_pred EEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECC
Confidence 55555555433221 33445555555555555544433344455555555555555443 1233445566667777777
Q ss_pred CCCCCcchhhhhcCCCCCCEEeccCCCCChHHHH--------HHhCCCCCcEeEccCCCCChhhHHHhhCCCCCCEEEcC
Q 013171 309 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR--------KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 380 (448)
Q Consensus 309 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~--------~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~ 380 (448)
+|.+....+..+..+++|+.|++++|.+...... .+..+++|+.|++++|.++......+.++++|+.|+++
T Consensus 489 ~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 568 (680)
T 1ziw_A 489 NNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLG 568 (680)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECC
Confidence 7766665555566667777777777766543211 24556777777777777765544456677777777777
Q ss_pred CCCCChHHHHhhhCCCCCCEEeeCCCCCChhHHHhhh-cCCCCCeecccCCCCCC
Q 013171 381 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK-DLSSLTLLNLSQNCNLT 434 (448)
Q Consensus 381 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~l~l~~~~~l~ 434 (448)
+|+++...+..+..+++|+.|++++|++++..+..+. .+++|+.+++++||...
T Consensus 569 ~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c 623 (680)
T 1ziw_A 569 LNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDC 623 (680)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCB
T ss_pred CCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCccc
Confidence 7777766555566777777777777777766666665 56777777777765443
No 12
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3e-36 Score=285.56 Aligned_cols=362 Identities=15% Similarity=0.122 Sum_probs=266.4
Q ss_pred cceeecCCCCCCChHHHHHHHhcCCCccEEEcccCCCChHH-hHhccCCCCCCeEeccCCcccChhHHHhhcCCCCCCEE
Q 013171 33 LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSG-LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSL 111 (448)
Q Consensus 33 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 111 (448)
++.+.+..+. +... .......++++++|+++++.+.+.+ +..+..+++|++|++++| .+....+..|.++++|++|
T Consensus 32 l~~L~Ls~n~-i~~~-~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L 108 (455)
T 3v47_A 32 VNYVDLSLNS-IAEL-NETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN-QFLQLETGAFNGLANLEVL 108 (455)
T ss_dssp CCEEECCSSC-CCEE-CTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC-TTCEECTTTTTTCTTCCEE
T ss_pred cCEEEecCCc-cCcC-ChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC-ccCccChhhccCcccCCEE
Confidence 6666665543 1111 1112346889999999999886444 567899999999999997 6777778889999999999
Q ss_pred eCCCCccccHHHHHH--HhCCCCCcEEecCCccccccchhh-ccCCCCCcEEeccCCCccCccccccCcCC--CCccEEE
Q 013171 112 SFRRNNAITAQGMKA--FAGLINLVKLDLERCTRIHGGLVN-LKGLMKLESLNIKWCNCITDSDMKPLSGL--TNLKSLQ 186 (448)
Q Consensus 112 ~l~~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~--~~L~~L~ 186 (448)
++++|.. .+..+.. +..+++|++|++++|......+.. +..+++|++|++++|. +....+..+..+ .+|+.++
T Consensus 109 ~L~~n~l-~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~~~L~~L~ 186 (455)
T 3v47_A 109 TLTQCNL-DGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK-VKSICEEDLLNFQGKHFTLLR 186 (455)
T ss_dssp ECTTSCC-BTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC-BSCCCTTTSGGGTTCEEEEEE
T ss_pred eCCCCCC-CccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc-ccccChhhhhccccccccccc
Confidence 9999985 4444444 889999999999998766555554 7899999999999854 444555555544 6899999
Q ss_pred ecCCCCChHHHH--------hccCCCCCCeEecCCCCCchhHHHHHhcC---CCCCEEEccCccCChhhHHhhhcCCCCc
Q 013171 187 ISCSKVTDSGIA--------YLKGLQKLTLLNLEGCPVTAACLDSLSAL---GSLFYLNLNRCQLSDDGCEKFSKIGSLK 255 (448)
Q Consensus 187 l~~~~~~~~~~~--------~l~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 255 (448)
++++.+.+.... .+..+++|++|++++|.+....+..+... ++|+.|+++++........ ...++.+.
T Consensus 187 l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~ 265 (455)
T 3v47_A 187 LSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG-HTNFKDPD 265 (455)
T ss_dssp CTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT-CCSSCCCC
T ss_pred cccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccc-hhhhccCc
Confidence 999887653322 23456889999999999988777766554 8999999998865432110 00111100
Q ss_pred EEEccCCCcChhHHHHhhCCCCCcEEeccCCccCcchhhhhhCCCCCCEeeccCCCCCcchhhhhcCCCCCCEEeccCCC
Q 013171 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 335 (448)
Q Consensus 256 ~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 335 (448)
...+. -...++|+.++++++.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.
T Consensus 266 -----~~~~~------~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 334 (455)
T 3v47_A 266 -----NFTFK------GLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF 334 (455)
T ss_dssp -----TTTTG------GGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred -----ccccc------cccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCc
Confidence 00000 0124678888888887777667777778888888888888877667777788888888888888
Q ss_pred CChHHHHHHhCCCCCcEeEccCCCCChhhHHHhhCCCCCCEEEcCCCCCChHHHHhhhCCCCCCEEeeCCCCCChh
Q 013171 336 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 411 (448)
Q Consensus 336 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 411 (448)
+.+..+..+..+++|++|++++|.++...+..+..+++|+.|++++|++++..+..+..+++|+.|++++|++...
T Consensus 335 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 410 (455)
T 3v47_A 335 LGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 410 (455)
T ss_dssp CCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred cCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccC
Confidence 8777667777888888888888888877677777888888888888888876666677888888888888887654
No 13
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=9e-36 Score=296.34 Aligned_cols=375 Identities=22% Similarity=0.224 Sum_probs=183.9
Q ss_pred CCccEEEcccCCCChHHhHhccCCCCCCeEeccCCcccChhHHHhhcCCCCCCEEeCCCCccccHHHHHHHhCCCCCcEE
Q 013171 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136 (448)
Q Consensus 57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 136 (448)
+++++|+++++.+++..+..++++++|++|++++| .+....+..|.++++|++|++++|.. ....+.+|.++++|++|
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l-~~l~~~~~~~l~~L~~L 102 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN-TISKLEPELCQKLPMLKVLNLQHNEL-SQLSDKTFAFCTNLTEL 102 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSS-CCCCCCTTHHHHCTTCCEEECCSSCC-CCCCTTTTTTCTTCSEE
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCC-ccCccCHHHHhcccCcCEEECCCCcc-CccChhhhccCCCCCEE
Confidence 45666666666665555555566666666666654 44555555555666666666666543 22223345566666666
Q ss_pred ecCCccccccchhhccCCCCCcEEeccCCCccCccccccCcCCCCccEEEecCCCCChHHHHhcc--CCCCCCeEecCCC
Q 013171 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK--GLQKLTLLNLEGC 214 (448)
Q Consensus 137 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~--~~~~L~~L~l~~~ 214 (448)
++++|......+..+..+++|++|++++|. +....+..+..+++|++|++++|.+++..+..+. .+++|++|+++++
T Consensus 103 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n 181 (680)
T 1ziw_A 103 HLMSNSIQKIKNNPFVKQKNLITLDLSHNG-LSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 181 (680)
T ss_dssp ECCSSCCCCCCSCTTTTCTTCCEEECCSSC-CSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTC
T ss_pred ECCCCccCccChhHccccCCCCEEECCCCc-ccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCC
Confidence 666554433333445556666666665532 3333444455555666666665555443333322 3345555555554
Q ss_pred CCchhHH---------------------------------------------------HHHhcC--CCCCEEEccCccCC
Q 013171 215 PVTAACL---------------------------------------------------DSLSAL--GSLFYLNLNRCQLS 241 (448)
Q Consensus 215 ~~~~~~~---------------------------------------------------~~~~~~--~~L~~L~l~~~~~~ 241 (448)
.+....+ ..+..+ ++|+.|++++|.+.
T Consensus 182 ~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~ 261 (680)
T 1ziw_A 182 QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN 261 (680)
T ss_dssp CCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCC
T ss_pred cccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcC
Confidence 4332222 222222 12444444444444
Q ss_pred hhhHHhhhcCCCCcEEEccCCCcChhHHHHhhCCCCCcEEeccCCccC---------cchhhhhhCCCCCCEeeccCCCC
Q 013171 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG---------DEGLVNLTGLCNLKCLELSDTQV 312 (448)
Q Consensus 242 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~---------~~~~~~l~~~~~L~~L~l~~~~~ 312 (448)
...+..+..+++|+.|++++|.+.+..+..+..+++|+.++++++... ......+..+++|+.|++.+|.+
T Consensus 262 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l 341 (680)
T 1ziw_A 262 VVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDI 341 (680)
T ss_dssp EECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCB
T ss_pred ccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCcc
Confidence 433334444455555555554444433344444555555555443211 01111344556666666666666
Q ss_pred CcchhhhhcCCCCCCEEeccCCC----------------------------CChHHHHHHhCCCCCcEeEccCCCCChhh
Q 013171 313 GSSGLRHLSGLTNLESINLSFTG----------------------------ISDGSLRKLAGLSSLKSLNLDARQITDTG 364 (448)
Q Consensus 313 ~~~~~~~l~~~~~L~~L~l~~~~----------------------------~~~~~~~~~~~~~~L~~L~l~~~~l~~~~ 364 (448)
....+..+..+++|++|++++|. +....+..+..+++|+.|++++|.+.+..
T Consensus 342 ~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 421 (680)
T 1ziw_A 342 PGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQEL 421 (680)
T ss_dssp CCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEEC
T ss_pred CCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCcccc
Confidence 65555555556666666555442 22222223333444444444444443211
Q ss_pred -HHHhhCCCCCCEEEcCCCCCChHHHHhhhCCCCCCEEeeCCCCCC--hhHHHhhhcCCCCCeecccCCCCCCH
Q 013171 365 -LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT--DAGVKHIKDLSSLTLLNLSQNCNLTD 435 (448)
Q Consensus 365 -~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~l~~~~~L~~l~l~~~~~l~~ 435 (448)
...+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+. +..|..+..+++|+.|++++| .++.
T Consensus 422 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N-~l~~ 494 (680)
T 1ziw_A 422 TGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN-NIAN 494 (680)
T ss_dssp CSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSS-CCCC
T ss_pred CcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCC-CCCc
Confidence 123334444444444444444433444444555555555555443 233455666777777777776 4443
No 14
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=9.3e-34 Score=269.00 Aligned_cols=385 Identities=23% Similarity=0.306 Sum_probs=288.4
Q ss_pred CCCccEEEcccCCCChHHhHh-ccCCCCCCeEeccCCcccChhH----HHhhcCCCCCCEEeCCCCccccHHHHHHH-hC
Q 013171 56 GSSLLSVDLSGSDVTDSGLIH-LKDCSNLQSLDFNFCIQISDGG----LEHLRGLSNLTSLSFRRNNAITAQGMKAF-AG 129 (448)
Q Consensus 56 ~~~l~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~ 129 (448)
++++++|+++++++++..... +..+++|++|++++| .+.... +..+..+++|++|++++|.. +...+..+ ..
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l-~~~~~~~l~~~ 79 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSNEL-GDVGVHCVLQG 79 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTCCC-HHHHHHHHHHT
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCC-CCCHHHHHHHHHHHHhCCCcCEEeCCCCcC-ChHHHHHHHHH
Confidence 467899999999888766544 778899999999987 566543 45567789999999999874 44444444 45
Q ss_pred CC----CCcEEecCCcccccc----chhhccCCCCCcEEeccCCCccCccccccC-----cCCCCccEEEecCCCCChHH
Q 013171 130 LI----NLVKLDLERCTRIHG----GLVNLKGLMKLESLNIKWCNCITDSDMKPL-----SGLTNLKSLQISCSKVTDSG 196 (448)
Q Consensus 130 l~----~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~ 196 (448)
++ +|++|++++|..... .+..+..+++|++|++++|. ++...+..+ ...++|++|++++|.+++..
T Consensus 80 l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 158 (461)
T 1z7x_W 80 LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS 158 (461)
T ss_dssp TCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred HhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHH
Confidence 66 699999998865542 35667889999999999855 443333222 23568999999999888643
Q ss_pred ----HHhccCCCCCCeEecCCCCCchhHHHHHh-----cCCCCCEEEccCccCChh----hHHhhhcCCCCcEEEccCCC
Q 013171 197 ----IAYLKGLQKLTLLNLEGCPVTAACLDSLS-----ALGSLFYLNLNRCQLSDD----GCEKFSKIGSLKVLNLGFNE 263 (448)
Q Consensus 197 ----~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~ 263 (448)
+..+..+++|++|++++|.+.......+. ..++|+.|++++|.++.. .+..+..+++|+.|++++|.
T Consensus 159 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 238 (461)
T 1z7x_W 159 CEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 238 (461)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB
T ss_pred HHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc
Confidence 45566789999999999987765444443 367999999999998764 35566778999999999998
Q ss_pred cChhHHHH-----hhCCCCCcEEeccCCccCcch----hhhhhCCCCCCEeeccCCCCCcchhhhhc-----CCCCCCEE
Q 013171 264 ITDECLVH-----LKGLTNLESLNLDSCGIGDEG----LVNLTGLCNLKCLELSDTQVGSSGLRHLS-----GLTNLESI 329 (448)
Q Consensus 264 ~~~~~~~~-----l~~~~~L~~l~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~~~~~l~-----~~~~L~~L 329 (448)
+++..... +..+++|++|++++|.++..+ +..+..+++|+.|++++|.+.+..+..+. ..++|+.|
T Consensus 239 l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L 318 (461)
T 1z7x_W 239 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESL 318 (461)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred CChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceee
Confidence 87654332 235789999999999887653 34455689999999999988765544442 23699999
Q ss_pred eccCCCCChHH----HHHHhCCCCCcEeEccCCCCChhhHHHhhC-----CCCCCEEEcCCCCCCh----HHHHhhhCCC
Q 013171 330 NLSFTGISDGS----LRKLAGLSSLKSLNLDARQITDTGLAALTS-----LTGLTHLDLFGARITD----SGAAYLRNFK 396 (448)
Q Consensus 330 ~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~-----~~~L~~L~l~~~~~~~----~~~~~~~~~~ 396 (448)
++++|.+.... +..+..+++|++|++++|.+++.++..+.. .++|+.|++++|.+++ ..+..+..++
T Consensus 319 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~ 398 (461)
T 1z7x_W 319 WVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANH 398 (461)
T ss_dssp ECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCC
T ss_pred EcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCC
Confidence 99999988653 455667899999999999998876665542 6799999999999996 5567778899
Q ss_pred CCCEEeeCCCCCChhHHHhhhc-----CCCCCeecccCCCCCCHHHHHHHHhh
Q 013171 397 NLRSLEICGGGLTDAGVKHIKD-----LSSLTLLNLSQNCNLTDKTLELISGI 444 (448)
Q Consensus 397 ~L~~L~l~~~~~~~~~~~~l~~-----~~~L~~l~l~~~~~l~~~~~~~l~~~ 444 (448)
+|++|++++|++++.....+.. ..+|+.|.+.++ .......+.+..+
T Consensus 399 ~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~-~~~~~~~~~l~~l 450 (461)
T 1z7x_W 399 SLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDI-YWSEEMEDRLQAL 450 (461)
T ss_dssp CCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTC-CCCHHHHHHHHHH
T ss_pred CccEEECCCCCCCHHHHHHHHHHhccCCcchhheeeccc-ccCHHHHHHHHHH
Confidence 9999999999999876666532 346888988887 5666555554443
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3e-37 Score=302.64 Aligned_cols=370 Identities=15% Similarity=0.108 Sum_probs=286.8
Q ss_pred hcCCCccEEEcccCCCChH-----------------HhHhcc--CCCCCCeEeccCCcccChhHHHhhcCCCCCCEEeCC
Q 013171 54 SQGSSLLSVDLSGSDVTDS-----------------GLIHLK--DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114 (448)
Q Consensus 54 ~~~~~l~~L~l~~~~~~~~-----------------~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 114 (448)
..++++++|+++++.+++. +|..++ ++++|++|++++| .+....+..+.++++|++|+++
T Consensus 203 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~Ls 281 (636)
T 4eco_A 203 MRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNC-PNLTKLPTFLKALPEMQLINVA 281 (636)
T ss_dssp GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECC-TTCSSCCTTTTTCSSCCEEECT
T ss_pred hcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCC-cCCccChHHHhcCCCCCEEECc
Confidence 3567888888888888875 777777 8888888888887 4555667778888899999999
Q ss_pred CCccccH-HHHHHHhCC------CCCcEEecCCccccccchh--hccCCCCCcEEeccCCCccCccccccCcCCCCccEE
Q 013171 115 RNNAITA-QGMKAFAGL------INLVKLDLERCTRIHGGLV--NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185 (448)
Q Consensus 115 ~~~~~~~-~~~~~~~~l------~~L~~L~l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 185 (448)
+|..+++ ..|..++++ ++|++|++++|... ..+. .+..+++|++|++++|. +.+..+ .+..+++|++|
T Consensus 282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~-l~g~ip-~~~~l~~L~~L 358 (636)
T 4eco_A 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQ-LEGKLP-AFGSEIKLASL 358 (636)
T ss_dssp TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCC-CEEECC-CCEEEEEESEE
T ss_pred CCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCc-Cccchh-hhCCCCCCCEE
Confidence 8873455 677777765 88999999887655 5666 78888999999998854 443344 77788899999
Q ss_pred EecCCCCChHHHHhccCCCC-CCeEecCCCCCchhHHHHHhcC--CCCCEEEccCccCChhhHHhhh-------cCCCCc
Q 013171 186 QISCSKVTDSGIAYLKGLQK-LTLLNLEGCPVTAACLDSLSAL--GSLFYLNLNRCQLSDDGCEKFS-------KIGSLK 255 (448)
Q Consensus 186 ~l~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~l~-------~~~~L~ 255 (448)
++++|.+. ..+..+..+++ |++|++++|.+.. .+..+... ++|+.|++++|.+....+..+. .+++|+
T Consensus 359 ~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~-lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~ 436 (636)
T 4eco_A 359 NLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVS 436 (636)
T ss_dssp ECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSS-CCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEE
T ss_pred ECCCCccc-cccHhhhhhcccCcEEEccCCcCcc-cchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCC
Confidence 99988877 45556788888 9999999998774 35555544 4899999999998877766666 678999
Q ss_pred EEEccCCCcChhHHHHhhCCCCCcEEeccCCccCcchhhhhhCC-------CCCCEeeccCCCCCcchhhhhc--CCCCC
Q 013171 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL-------CNLKCLELSDTQVGSSGLRHLS--GLTNL 326 (448)
Q Consensus 256 ~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~l~~~-------~~L~~L~l~~~~~~~~~~~~l~--~~~~L 326 (448)
.|++++|.++......+..+++|+.|++++|.+.......+... ++|+.|++++|.+.. .+..+. .+++|
T Consensus 437 ~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~~~l~~L 515 (636)
T 4eco_A 437 SINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYL 515 (636)
T ss_dssp EEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCB-CCGGGSTTTCTTC
T ss_pred EEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCc-cChhhhhccCCCc
Confidence 99999999986655667789999999999999885444333333 289999999999985 455555 89999
Q ss_pred CEEeccCCCCChHHHHHHhCCCCCcEeEcc------CCCCChhhHHHhhCCCCCCEEEcCCCCCChHHHHhhhCCCCCCE
Q 013171 327 ESINLSFTGISDGSLRKLAGLSSLKSLNLD------ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 400 (448)
Q Consensus 327 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~------~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 400 (448)
+.|++++|.+.. .+..+..+++|+.|+++ +|.+.+..+..+..+++|+.|++++|++.. .|..+ .++|+.
T Consensus 516 ~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-ip~~~--~~~L~~ 591 (636)
T 4eco_A 516 VGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPNISV 591 (636)
T ss_dssp CEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCB-CCSCC--CTTCCE
T ss_pred CEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCc-cCHhH--hCcCCE
Confidence 999999999987 56778889999999994 566777667788899999999999999955 45554 389999
Q ss_pred EeeCCCCCChh-----HHHhhhcC---CCCCeecccCCCCCC
Q 013171 401 LEICGGGLTDA-----GVKHIKDL---SSLTLLNLSQNCNLT 434 (448)
Q Consensus 401 L~l~~~~~~~~-----~~~~l~~~---~~L~~l~l~~~~~l~ 434 (448)
|++++|++... .+...... ...+..++++|+.+.
T Consensus 592 L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~~L~ 633 (636)
T 4eco_A 592 LDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALD 633 (636)
T ss_dssp EECCSCTTCEEECTTTHHHHHTTCCEEECCTTSEEESCGGGC
T ss_pred EECcCCCCccccHHhcchhhhcccceeecCCccccCCCcccc
Confidence 99999977643 23333333 334566788887653
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=9.3e-36 Score=286.87 Aligned_cols=372 Identities=16% Similarity=0.118 Sum_probs=225.0
Q ss_pred CCccEEEcccCCCChHHhHhccCCCCCCeEeccCCcccChhHHHhhcCCCCCCEEeCCCCccccHHHHHHHhCCCCCcEE
Q 013171 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136 (448)
Q Consensus 57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 136 (448)
+++++|+++++.+++..+..+..+++|++|++++| .+....+..|..+++|++|++++|... . ++.. .+++|++|
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~-lp~~--~l~~L~~L 95 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHNKLV-K-ISCH--PTVNLKHL 95 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSSCCC-E-EECC--CCCCCSEE
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCC-ccCCcChHHhhcccCCCEEecCCCcee-e-cCcc--ccCCccEE
Confidence 45555555555555444445555555555555554 344444455555555555555555431 1 1111 45555555
Q ss_pred ecCCccccc-cchhhccCCCCCcEEeccCCCccCccccccCcCCCCc--cEEEecCCCC---------------------
Q 013171 137 DLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL--KSLQISCSKV--------------------- 192 (448)
Q Consensus 137 ~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--------------------- 192 (448)
++++|.... ..+..+..+++|++|+++++. +.. ..+..+++| +.|++++|.+
T Consensus 96 ~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~ 171 (520)
T 2z7x_B 96 DLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIV 171 (520)
T ss_dssp ECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEE
T ss_pred eccCCccccccchhhhccCCcceEEEecCcc-cch---hhccccccceeeEEEeecccccccccccccccccccceEEEE
Confidence 555544332 123445555555555555432 211 122223333 4444444333
Q ss_pred --------------------------------------ChHHHHhccCCCCCCeEecCCCCCchhHHHHHh---cCCCCC
Q 013171 193 --------------------------------------TDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS---ALGSLF 231 (448)
Q Consensus 193 --------------------------------------~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~L~ 231 (448)
.+.. ..+..+++|+.|++.++.+.......+. ..++|+
T Consensus 172 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~ 250 (520)
T 2z7x_B 172 FPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSIL-AKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVW 250 (520)
T ss_dssp CCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHH-HGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCS
T ss_pred eccCcchhhhhhhhhhcccceeeccccccccccccceeecch-hhhccccchhhccccccccCHHHHHHHHHHhhhCccc
Confidence 2222 2455566666666666554432222111 245777
Q ss_pred EEEccCccCChhhHHhh-----hcCCCCcEEEccCCCcCh--hHHHH----------------------hhCCCCCcEEe
Q 013171 232 YLNLNRCQLSDDGCEKF-----SKIGSLKVLNLGFNEITD--ECLVH----------------------LKGLTNLESLN 282 (448)
Q Consensus 232 ~L~l~~~~~~~~~~~~l-----~~~~~L~~L~l~~~~~~~--~~~~~----------------------l~~~~~L~~l~ 282 (448)
.|++++|.+.+..+..+ ..+++|+.++++++.+.- ..... +..+++|++|+
T Consensus 251 ~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ 330 (520)
T 2z7x_B 251 YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLD 330 (520)
T ss_dssp EEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEE
T ss_pred EEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEE
Confidence 77777776654444444 445555555555444310 00001 15677888888
Q ss_pred ccCCccCcchhhhhhCCCCCCEeeccCCCCCc--chhhhhcCCCCCCEEeccCCCCCh-HHHHHHhCCCCCcEeEccCCC
Q 013171 283 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS--SGLRHLSGLTNLESINLSFTGISD-GSLRKLAGLSSLKSLNLDARQ 359 (448)
Q Consensus 283 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~ 359 (448)
+++|.+....+..+..+++|+.|++++|.+.+ ..+..+..+++|+.|++++|.+.. .....+..+++|+.|++++|.
T Consensus 331 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~ 410 (520)
T 2z7x_B 331 FSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI 410 (520)
T ss_dssp CCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSC
T ss_pred eECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCC
Confidence 88888877667777788888888888888876 334567788888888888888876 433346677888888888888
Q ss_pred CChhhHHHhhCCCCCCEEEcCCCCCChHHHHhhhCCCCCCEEeeCCCCCChhHHHhhhcCCCCCeecccCCCCCCHHHHH
Q 013171 360 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 439 (448)
Q Consensus 360 l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~l~~~~~~ 439 (448)
+++..+..+. ++|+.|++++|+++. .+..+..+++|++|++++|+++...+..+..+++|+.+++++||--.+....
T Consensus 411 l~~~~~~~l~--~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 487 (520)
T 2z7x_B 411 LTDTIFRCLP--PRIKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 487 (520)
T ss_dssp CCGGGGGSCC--TTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHH
T ss_pred CCcchhhhhc--ccCCEEECCCCcccc-cchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCch
Confidence 8765444432 689999999998885 4555668999999999999998764445888999999999999777776665
Q ss_pred HH
Q 013171 440 LI 441 (448)
Q Consensus 440 ~l 441 (448)
.+
T Consensus 488 ~~ 489 (520)
T 2z7x_B 488 DY 489 (520)
T ss_dssp HH
T ss_pred HH
Confidence 55
No 17
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=4.2e-37 Score=306.33 Aligned_cols=371 Identities=16% Similarity=0.145 Sum_probs=222.6
Q ss_pred HHHHHhcCCCccEEEcccCCCChHHhHhccCCCCCCeEec-cCCcccChh------------------------------
Q 013171 49 MDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDF-NFCIQISDG------------------------------ 97 (448)
Q Consensus 49 ~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~------------------------------ 97 (448)
.++.|....+|+.|+|+++.+.+.++..++++++|++|+| +++ .+.+.
T Consensus 315 ~GV~C~~~~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N-~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~ 393 (876)
T 4ecn_A 315 PGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHS-ETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLD 393 (876)
T ss_dssp TTEEECTTSCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTT-HHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTC
T ss_pred CceEecCCCCEEEEECccCCCCCcCchHHhccccceEeeecccc-cccccccccccccccccchhHHHHHHHhhhhhhhc
Confidence 4444443468999999999898888888999999999999 443 21111
Q ss_pred ----------------------------------------------HHHhhcCCCCCCEEeCCCCccccH----------
Q 013171 98 ----------------------------------------------GLEHLRGLSNLTSLSFRRNNAITA---------- 121 (448)
Q Consensus 98 ----------------------------------------------~~~~l~~~~~L~~L~l~~~~~~~~---------- 121 (448)
.|..++++++|++|++++|.+.+.
T Consensus 394 ~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s 473 (876)
T 4ecn_A 394 YDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDAN 473 (876)
T ss_dssp CCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTT
T ss_pred cCcchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccc
Confidence 345677888888888888875321
Q ss_pred ------HHHHHHh--CCCCCcEEecCCccccccchhhccCCCCCcEEeccCCCccCc-ccccc-------CcCCCCccEE
Q 013171 122 ------QGMKAFA--GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD-SDMKP-------LSGLTNLKSL 185 (448)
Q Consensus 122 ------~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~-------~~~~~~L~~L 185 (448)
.+|..++ ++++|++|++++|......+..+..+++|++|++++|..+++ ..+.. +..+++|+.|
T Consensus 474 ~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L 553 (876)
T 4ecn_A 474 SDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIF 553 (876)
T ss_dssp SHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEE
T ss_pred cccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEE
Confidence 2566655 888888888888776777777788888888888888653444 33332 3344578888
Q ss_pred EecCCCCChHHHH--hccCCCCCCeEecCCCCCchhHHHHHhcCCCCCEEEccCccCChhhHHhhhcCCC-CcEEEccCC
Q 013171 186 QISCSKVTDSGIA--YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS-LKVLNLGFN 262 (448)
Q Consensus 186 ~l~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~l~~~ 262 (448)
++++|.+. ..+. .+..+++|+.|++++|.+.. .+ .+..+++|+.|++++|.+. ..+..+..+++ |+.|++++|
T Consensus 554 ~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~-lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N 629 (876)
T 4ecn_A 554 YMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRH-LE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHN 629 (876)
T ss_dssp ECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCB-CC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSS
T ss_pred EeeCCcCC-ccCChhhhhcCCCCCEEECCCCCccc-ch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCC
Confidence 88887777 4444 67777788888887777663 23 5667777777777777766 34455666666 777777776
Q ss_pred CcChhHHHHhhCCC--CCcEEeccCCc-----------------------------cCcchhhhhhCCCCCCEeeccCCC
Q 013171 263 EITDECLVHLKGLT--NLESLNLDSCG-----------------------------IGDEGLVNLTGLCNLKCLELSDTQ 311 (448)
Q Consensus 263 ~~~~~~~~~l~~~~--~L~~l~l~~~~-----------------------------~~~~~~~~l~~~~~L~~L~l~~~~ 311 (448)
.++ ..+..+...+ +|+.|++++|. +.......+..+++|+.|++++|.
T Consensus 630 ~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~ 708 (876)
T 4ecn_A 630 KLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL 708 (876)
T ss_dssp CCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCC
T ss_pred CCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCc
Confidence 655 2232232222 24555555444 432222223344555555555555
Q ss_pred CCcchhhhhcC-------CCCCCEEeccCCCCChHHHHHHh--CCCCCcEeEccCCCCChhhHHHhhCCCCCCEEEcCC-
Q 013171 312 VGSSGLRHLSG-------LTNLESINLSFTGISDGSLRKLA--GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG- 381 (448)
Q Consensus 312 ~~~~~~~~l~~-------~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~- 381 (448)
+.......+.. +++|+.|++++|.+.. .+..+. .+++|+.|++++|.++.. +..+..+++|+.|++++
T Consensus 709 L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~-lp~~l~~~~l~~L~~L~Ls~N~L~~l-p~~l~~L~~L~~L~Ls~N 786 (876)
T 4ecn_A 709 MTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCFSSF-PTQPLNSSQLKAFGIRHQ 786 (876)
T ss_dssp CSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCC-CCGGGSTTTCTTCCEEECCSSCCSSC-CCGGGGCTTCCEEECCCC
T ss_pred CCccChHHhccccccccccCCccEEECCCCCCcc-chHHhhhccCCCcCEEEeCCCCCCcc-chhhhcCCCCCEEECCCC
Confidence 44322211111 1255555555555553 223333 455666666666555542 34445555666665544
Q ss_pred -----CCCChHHHHhhhCCCCCCEEeeCCCCCChhHHHhhhcCCCCCeecccCC
Q 013171 382 -----ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430 (448)
Q Consensus 382 -----~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~ 430 (448)
|.+.+..|..+.++++|+.|++++|.+. .+|..+. ++|+.|++++|
T Consensus 787 ~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~-~Ip~~l~--~~L~~LdLs~N 837 (876)
T 4ecn_A 787 RDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKLT--PQLYILDIADN 837 (876)
T ss_dssp BCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--SSSCEEECCSC
T ss_pred CCcccccccccChHHHhcCCCCCEEECCCCCCC-ccCHhhc--CCCCEEECCCC
Confidence 4444444555555666666666666553 2233332 45666666666
No 18
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=9.5e-36 Score=292.35 Aligned_cols=369 Identities=20% Similarity=0.180 Sum_probs=249.7
Q ss_pred ccEEEcccCCCChHHhHhccCCCCCCeEeccCCcccChhHHHhhcCCCCCCEEeCCCCccccHHHHHHHhCCCCCcEEec
Q 013171 59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 138 (448)
Q Consensus 59 l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 138 (448)
-++++.++.+++. +|..+ .+++++|+++++ .+....+..|.++++|++|++++|.. ....+.+|.++++|++|++
T Consensus 13 ~~~~~c~~~~l~~-ip~~~--~~~l~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~i~~~~~~~l~~L~~L~L 87 (606)
T 3vq2_A 13 NITYQCMDQKLSK-VPDDI--PSSTKNIDLSFN-PLKILKSYSFSNFSELQWLDLSRCEI-ETIEDKAWHGLHHLSNLIL 87 (606)
T ss_dssp TTEEECTTSCCSS-CCTTS--CTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCCC-CEECTTTTTTCTTCCEEEC
T ss_pred CCceEccCCCccc-CCCCC--CCCcCEEECCCC-CcCEeChhhccCCccCcEEeCCCCcc-cccCHHHhhchhhcCEeEC
Confidence 4578888877764 33333 378999999997 78888788899999999999999974 4555778999999999999
Q ss_pred CCccccccchhhccCCCCCcEEeccCCCccCccccccCcCCCCccEEEecCCCCCh-HHHHhccCCCCCCeEecCCCCCc
Q 013171 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVT 217 (448)
Q Consensus 139 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~ 217 (448)
++|......+..+..+++|++|++++|. +....+..+..+++|++|++++|.+.+ ..+..+..+++|++|++++|.+.
T Consensus 88 s~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~ 166 (606)
T 3vq2_A 88 TGNPIQSFSPGSFSGLTSLENLVAVETK-LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 166 (606)
T ss_dssp TTCCCCCCCTTSSTTCTTCCEEECTTSC-CCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCC
T ss_pred CCCcccccChhhcCCcccCCEEEccCCc-cccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcce
Confidence 9987666667889999999999999954 454555678999999999999999875 34778899999999999999776
Q ss_pred hhHHHHHhcCC---------------------------CCCEEEccCccCChh-hHH-----------------------
Q 013171 218 AACLDSLSALG---------------------------SLFYLNLNRCQLSDD-GCE----------------------- 246 (448)
Q Consensus 218 ~~~~~~~~~~~---------------------------~L~~L~l~~~~~~~~-~~~----------------------- 246 (448)
...+..+..++ +|+.|++++|.+... .+.
T Consensus 167 ~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~ 246 (606)
T 3vq2_A 167 TITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN 246 (606)
T ss_dssp EECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCC
T ss_pred ecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCc
Confidence 54333332222 345555555443210 011
Q ss_pred -------------------------------------------------------hhhcCCCCcEEEccCCCcChhH---
Q 013171 247 -------------------------------------------------------KFSKIGSLKVLNLGFNEITDEC--- 268 (448)
Q Consensus 247 -------------------------------------------------------~l~~~~~L~~L~l~~~~~~~~~--- 268 (448)
.+..+++|+.|++++|.+....
T Consensus 247 l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~~ 326 (606)
T 3vq2_A 247 LEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLD 326 (606)
T ss_dssp CSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCCCCC
T ss_pred ccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCcccccCC
Confidence 1112223444444444331110
Q ss_pred ----------------HHHhhCCCCCcEEeccCCccCcch--hhhhhCCCCCCEeeccCCCCCc----------------
Q 013171 269 ----------------LVHLKGLTNLESLNLDSCGIGDEG--LVNLTGLCNLKCLELSDTQVGS---------------- 314 (448)
Q Consensus 269 ----------------~~~l~~~~~L~~l~l~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~---------------- 314 (448)
...+..+++|+.|++++|.+.... +..+..+++|+.|++++|.+..
T Consensus 327 l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l 406 (606)
T 3vq2_A 327 LPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDF 406 (606)
T ss_dssp CSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEEC
T ss_pred CCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeEC
Confidence 002335677888888887765442 4455566666666666665433
Q ss_pred -------chh-hhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEccCCCCChh-hHHHhhCCCCCCEEEcCCCCCC
Q 013171 315 -------SGL-RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT-GLAALTSLTGLTHLDLFGARIT 385 (448)
Q Consensus 315 -------~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~l~~~~~L~~L~l~~~~~~ 385 (448)
..+ ..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.+. .+..+..+++|+.|++++|.++
T Consensus 407 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~ 486 (606)
T 3vq2_A 407 QHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLE 486 (606)
T ss_dssp TTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC
T ss_pred CCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCC
Confidence 222 2344555566666666655554445556666666666666666552 3445566777777777777777
Q ss_pred hHHHHhhhCCCCCCEEeeCCCCCChhHHHhhhcCCCCCeecccCCCCCC
Q 013171 386 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 434 (448)
Q Consensus 386 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~l~ 434 (448)
+..+..+..+++|+.|++++|++++..|..+..+++|+.|++++| .++
T Consensus 487 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~ 534 (606)
T 3vq2_A 487 QISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN-RIE 534 (606)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTS-CCC
T ss_pred ccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCC-cCc
Confidence 766666777777777777777777776777777777777877777 455
No 19
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=1.9e-33 Score=266.82 Aligned_cols=363 Identities=23% Similarity=0.258 Sum_probs=287.1
Q ss_pred CCCCCeEeccCCcccChhHHHh-hcCCCCCCEEeCCCCccccH---HHHHHHhCCCCCcEEecCCccccccchhhc-cCC
Q 013171 80 CSNLQSLDFNFCIQISDGGLEH-LRGLSNLTSLSFRRNNAITA---QGMKAFAGLINLVKLDLERCTRIHGGLVNL-KGL 154 (448)
Q Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~---~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l-~~l 154 (448)
.++|++|+++++ .+.+..... +..+++|++|++++|..... ..+..+..+++|++|++++|......+..+ ..+
T Consensus 2 ~~~l~~L~Ls~~-~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 80 (461)
T 1z7x_W 2 SLDIQSLDIQCE-ELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL 80 (461)
T ss_dssp CEEEEEEEEESC-CCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred Cccceehhhhhc-ccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence 357899999886 566666555 78899999999999985322 346678889999999999987554444333 334
Q ss_pred C----CCcEEeccCCCccCc----cccccCcCCCCccEEEecCCCCChHHHHhcc-----CCCCCCeEecCCCCCchh--
Q 013171 155 M----KLESLNIKWCNCITD----SDMKPLSGLTNLKSLQISCSKVTDSGIAYLK-----GLQKLTLLNLEGCPVTAA-- 219 (448)
Q Consensus 155 ~----~L~~L~l~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~~~~-- 219 (448)
+ +|++|++++|. ++. ..+..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+...
T Consensus 81 ~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 159 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC 159 (461)
T ss_dssp CSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred hhCCCceeEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHH
Confidence 4 79999999965 442 2356788999999999999998876555442 356899999999988763
Q ss_pred --HHHHHhcCCCCCEEEccCccCChhhHHhhh-----cCCCCcEEEccCCCcChh----HHHHhhCCCCCcEEeccCCcc
Q 013171 220 --CLDSLSALGSLFYLNLNRCQLSDDGCEKFS-----KIGSLKVLNLGFNEITDE----CLVHLKGLTNLESLNLDSCGI 288 (448)
Q Consensus 220 --~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~l~l~~~~~ 288 (448)
.+..+..+++|++|++++|.+.+.....+. ..++|+.|++++|.+++. .+..+..+++|+.|++++|.+
T Consensus 160 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 239 (461)
T 1z7x_W 160 EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL 239 (461)
T ss_dssp HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred HHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcC
Confidence 355677889999999999998776555543 367999999999998874 355677889999999999988
Q ss_pred Ccchhhhh-----hCCCCCCEeeccCCCCCcch----hhhhcCCCCCCEEeccCCCCChHHHHHHhC-----CCCCcEeE
Q 013171 289 GDEGLVNL-----TGLCNLKCLELSDTQVGSSG----LRHLSGLTNLESINLSFTGISDGSLRKLAG-----LSSLKSLN 354 (448)
Q Consensus 289 ~~~~~~~l-----~~~~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~ 354 (448)
...+...+ ..+++|+.|++++|.++... +..+..+++|++|++++|.+.+..+..+.. .++|++|+
T Consensus 240 ~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~ 319 (461)
T 1z7x_W 240 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLW 319 (461)
T ss_dssp HHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred ChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeE
Confidence 76543332 25789999999999988754 444566899999999999998766655543 37999999
Q ss_pred ccCCCCChhh----HHHhhCCCCCCEEEcCCCCCChHHHHhhhC-----CCCCCEEeeCCCCCCh----hHHHhhhcCCC
Q 013171 355 LDARQITDTG----LAALTSLTGLTHLDLFGARITDSGAAYLRN-----FKNLRSLEICGGGLTD----AGVKHIKDLSS 421 (448)
Q Consensus 355 l~~~~l~~~~----~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~~~~----~~~~~l~~~~~ 421 (448)
+++|.++... +..+..+++|+.|++++|.+.+.++..+.. .++|++|++++|.+++ ..+..+..+++
T Consensus 320 L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~ 399 (461)
T 1z7x_W 320 VKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHS 399 (461)
T ss_dssp CTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCC
T ss_pred cCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCC
Confidence 9999998764 345567899999999999998876665532 7899999999999997 56777888999
Q ss_pred CCeecccCCCCCCHHHHHHHHhhh
Q 013171 422 LTLLNLSQNCNLTDKTLELISGIL 445 (448)
Q Consensus 422 L~~l~l~~~~~l~~~~~~~l~~~~ 445 (448)
|++|++++| .+++.+++.+.+.+
T Consensus 400 L~~L~l~~N-~i~~~~~~~l~~~l 422 (461)
T 1z7x_W 400 LRELDLSNN-CLGDAGILQLVESV 422 (461)
T ss_dssp CCEEECCSS-SCCHHHHHHHHHHH
T ss_pred ccEEECCCC-CCCHHHHHHHHHHh
Confidence 999999999 89999999888654
No 20
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=6.6e-33 Score=262.70 Aligned_cols=339 Identities=27% Similarity=0.335 Sum_probs=174.3
Q ss_pred CccEEEcccCCCChHHhHhccCCCCCCeEeccCCcccChhHHHhhcCCCCCCEEeCCCCccccHHHHHHHhCCCCCcEEe
Q 013171 58 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 137 (448)
Q Consensus 58 ~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 137 (448)
++++|+++++.++.. ..+..+++|++|++++| .+....+ +..+++|++|++++|... ...+ +.++++|++|+
T Consensus 47 ~l~~L~l~~~~i~~l--~~~~~l~~L~~L~Ls~n-~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~ 118 (466)
T 1o6v_A 47 QVTTLQADRLGIKSI--DGVEYLNNLTQINFSNN-QLTDITP--LKNLTKLVDILMNNNQIA-DITP--LANLTNLTGLT 118 (466)
T ss_dssp TCCEEECCSSCCCCC--TTGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEE
T ss_pred cccEEecCCCCCccC--cchhhhcCCCEEECCCC-ccCCchh--hhccccCCEEECCCCccc-cChh--hcCCCCCCEEE
Confidence 555555555554431 12455556666666554 3433322 555556666666555432 2111 55556666666
Q ss_pred cCCccccccchhhccCCCCCcEEeccCCCccCccccccCcCCCCccEEEecCCCCChHHHHhccCCCCCCeEecCCCCCc
Q 013171 138 LERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217 (448)
Q Consensus 138 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 217 (448)
+++|..... + .+..+++|++|++++|. +... ..+..+++|+.|++.+ .+... ..+..+++|+.|+++++.+.
T Consensus 119 L~~n~l~~~-~-~~~~l~~L~~L~l~~n~-l~~~--~~~~~l~~L~~L~l~~-~~~~~--~~~~~l~~L~~L~l~~n~l~ 190 (466)
T 1o6v_A 119 LFNNQITDI-D-PLKNLTNLNRLELSSNT-ISDI--SALSGLTSLQQLSFGN-QVTDL--KPLANLTTLERLDISSNKVS 190 (466)
T ss_dssp CCSSCCCCC-G-GGTTCTTCSEEEEEEEE-ECCC--GGGTTCTTCSEEEEEE-SCCCC--GGGTTCTTCCEEECCSSCCC
T ss_pred CCCCCCCCC-h-HHcCCCCCCEEECCCCc-cCCC--hhhccCCcccEeecCC-cccCc--hhhccCCCCCEEECcCCcCC
Confidence 655432221 1 25555566666655532 2211 2345555555555542 22221 12455555666666555544
Q ss_pred hhHHHHHhcCCCCCEEEccCccCChhhHHhhhcCCCCcEEEccCCCcChhHHHHhhCCCCCcEEeccCCccCcchhhhhh
Q 013171 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297 (448)
Q Consensus 218 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~l~ 297 (448)
.. ..+..+++|+.|++++|.+....+ +..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+....+ +.
T Consensus 191 ~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~ 262 (466)
T 1o6v_A 191 DI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LS 262 (466)
T ss_dssp CC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GT
T ss_pred CC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hh
Confidence 32 224555566666666555544332 44455566666655555432 234455566666666555543322 44
Q ss_pred CCCCCCEeeccCCCCCcchhhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEccCCCCChhhHHHhhCCCCCCEE
Q 013171 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 377 (448)
Q Consensus 298 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L 377 (448)
.+++|+.|++++|.+....+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+++..+ +..+++|+.|
T Consensus 263 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L 336 (466)
T 1o6v_A 263 GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL 336 (466)
T ss_dssp TCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEE
T ss_pred cCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEe
Confidence 55566666666655554322 4455566666666665554322 4455666666666665555332 4455666666
Q ss_pred EcCCCCCChHHHHhhhCCCCCCEEeeCCCCCChhHHHhhhcCCCCCeecccCC
Q 013171 378 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430 (448)
Q Consensus 378 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~ 430 (448)
++++|.+++. ..+..+++|+.|++++|++.+..| +..+++|+.|++++|
T Consensus 337 ~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 337 FFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 385 (466)
T ss_dssp ECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCE
T ss_pred ECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCC
Confidence 6666655543 244555666666666666555443 555566666666555
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=9.7e-34 Score=272.80 Aligned_cols=360 Identities=16% Similarity=0.134 Sum_probs=258.7
Q ss_pred cEEEcccCCCChHHhHhccCCCCCCeEeccCCcccChhHHHhhcCCCCCCEEeCCCCccccHHHHHHHhCCCCCcEEecC
Q 013171 60 LSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139 (448)
Q Consensus 60 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 139 (448)
++|++++++++. ++..+. ++|++|++++| .+....+..|..+++|++|++++|.. ....+.++.++++|++|+++
T Consensus 3 ~~l~ls~n~l~~-ip~~~~--~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~Ls 77 (520)
T 2z7x_B 3 FLVDRSKNGLIH-VPKDLS--QKTTILNISQN-YISELWTSDILSLSKLRILIISHNRI-QYLDISVFKFNQELEYLDLS 77 (520)
T ss_dssp CEEECTTSCCSS-CCCSCC--TTCSEEECCSS-CCCCCCHHHHTTCTTCCEEECCSSCC-CEEEGGGGTTCTTCCEEECC
T ss_pred ceEecCCCCccc-cccccc--ccccEEECCCC-cccccChhhccccccccEEecCCCcc-CCcChHHhhcccCCCEEecC
Confidence 679999999884 454443 89999999997 67888888999999999999999984 45557889999999999999
Q ss_pred CccccccchhhccCCCCCcEEeccCCCccCccccccCcCCCCccEEEecCCCCChHHHHhccCCCCC--CeEecCCCCC-
Q 013171 140 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL--TLLNLEGCPV- 216 (448)
Q Consensus 140 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L--~~L~l~~~~~- 216 (448)
+|... ..+.. .+++|++|++++|.......+..+..+++|++|++++|.+.+ ..+..+++| +.|+++++.+
T Consensus 78 ~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~ 151 (520)
T 2z7x_B 78 HNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETY 151 (520)
T ss_dssp SSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTT
T ss_pred CCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccc
Confidence 98644 44444 799999999999654433456788999999999999999886 345666667 8888877765
Q ss_pred -chhHHH--------------------------------------------------------HHhcCCCCCEEEccCcc
Q 013171 217 -TAACLD--------------------------------------------------------SLSALGSLFYLNLNRCQ 239 (448)
Q Consensus 217 -~~~~~~--------------------------------------------------------~~~~~~~L~~L~l~~~~ 239 (448)
....+. .+..+++|+.|+++++.
T Consensus 152 ~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 231 (520)
T 2z7x_B 152 GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIE 231 (520)
T ss_dssp TSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEE
T ss_pred ccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccc
Confidence 222122 23334444444444444
Q ss_pred CChhhHHhhh---cCCCCcEEEccCCCcChhHHHHh-----hCCCCCcEEeccCCcc-----------------------
Q 013171 240 LSDDGCEKFS---KIGSLKVLNLGFNEITDECLVHL-----KGLTNLESLNLDSCGI----------------------- 288 (448)
Q Consensus 240 ~~~~~~~~l~---~~~~L~~L~l~~~~~~~~~~~~l-----~~~~~L~~l~l~~~~~----------------------- 288 (448)
+.+.....+. ..++|+.|++++|.+++..+..+ ..+++|+.+++.++.+
T Consensus 232 l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~ 311 (520)
T 2z7x_B 232 TTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSG 311 (520)
T ss_dssp EEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEES
T ss_pred cCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCC
Confidence 3332211111 13456666665555443333333 3444444444443332
Q ss_pred ---CcchhhhhhCCCCCCEeeccCCCCCcchhhhhcCCCCCCEEeccCCCCCh--HHHHHHhCCCCCcEeEccCCCCCh-
Q 013171 289 ---GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD--GSLRKLAGLSSLKSLNLDARQITD- 362 (448)
Q Consensus 289 ---~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~l~~- 362 (448)
.... .+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+ ..+..+..+++|+.|++++|.+.+
T Consensus 312 n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~ 389 (520)
T 2z7x_B 312 TRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYD 389 (520)
T ss_dssp SCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCC
T ss_pred Ccccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcc
Confidence 1100 01467889999999998887777788889999999999999887 445678889999999999999887
Q ss_pred hhHHHhhCCCCCCEEEcCCCCCChHHHHhhhCCCCCCEEeeCCCCCChhHHHhhhcCCCCCeecccCCCCCCHH
Q 013171 363 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 436 (448)
Q Consensus 363 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~l~~~ 436 (448)
.....+..+++|+.|++++|.+++..+..+. ++|+.|++++|+++.. |..+..+++|+.|++++| .++..
T Consensus 390 l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~i-p~~~~~l~~L~~L~L~~N-~l~~l 459 (520)
T 2z7x_B 390 EKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSI-PKQVVKLEALQELNVASN-QLKSV 459 (520)
T ss_dssp GGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCC-CGGGGGCTTCCEEECCSS-CCCCC
T ss_pred cccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccccc-chhhhcCCCCCEEECCCC-cCCcc
Confidence 4333467889999999999999876665542 7999999999999844 666779999999999999 66643
No 22
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.3e-35 Score=298.92 Aligned_cols=355 Identities=20% Similarity=0.152 Sum_probs=225.1
Q ss_pred cCCCccEEEcccCCCChHH-hHhccCCCCCCeEeccCCcccChhHHHhhcCCCCCCEEeCCCCccccHHHHH--HHhCCC
Q 013171 55 QGSSLLSVDLSGSDVTDSG-LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK--AFAGLI 131 (448)
Q Consensus 55 ~~~~l~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~--~~~~l~ 131 (448)
.+++|++|+++++.....+ +..++++++|++|+|++| .+....+..|..+++|++|++++|... +..+. .+.+++
T Consensus 46 ~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~~~L~ 123 (844)
T 3j0a_A 46 FLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS-KIYFLHPDAFQGLFHLFELRLYFCGLS-DAVLKDGYFRNLK 123 (844)
T ss_dssp SCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC-CCCEECTTSSCSCSSCCCEECTTCCCS-SCCSTTCCCSSCS
T ss_pred ccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC-cCcccCHhHccCCcccCEeeCcCCCCC-cccccCccccccC
Confidence 4556666666655333222 445566666666666664 455555555666666666666666532 21122 255566
Q ss_pred CCcEEecCCccccccch-hhccCCCCCcEEeccCCCc-------------------------cCccccccCcCCC-----
Q 013171 132 NLVKLDLERCTRIHGGL-VNLKGLMKLESLNIKWCNC-------------------------ITDSDMKPLSGLT----- 180 (448)
Q Consensus 132 ~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~-------------------------~~~~~~~~~~~~~----- 180 (448)
+|++|++++|......+ ..+..+++|++|+++++.. +....+..+..++
T Consensus 124 ~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~ 203 (844)
T 3j0a_A 124 ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRN 203 (844)
T ss_dssp SCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTT
T ss_pred CCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCcccc
Confidence 66666666554433322 3455566666666655321 1111222233333
Q ss_pred -CccEEEecCCCCChHHHHhc------------------------------------cC--CCCCCeEecCCCCCchhHH
Q 013171 181 -NLKSLQISCSKVTDSGIAYL------------------------------------KG--LQKLTLLNLEGCPVTAACL 221 (448)
Q Consensus 181 -~L~~L~l~~~~~~~~~~~~l------------------------------------~~--~~~L~~L~l~~~~~~~~~~ 221 (448)
.|+.|++++|.+....+..+ .. .++|+.|+++++.+....+
T Consensus 204 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~ 283 (844)
T 3j0a_A 204 MVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNS 283 (844)
T ss_dssp CCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECS
T ss_pred CceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccCh
Confidence 38899998886553322221 11 2679999999998877666
Q ss_pred HHHhcCCCCCEEEccCccCChhhHHhhhcCCCCcEEEccCCCcChhHHHHhhCCCCCcEEeccCCccCcchhhhhhCCCC
Q 013171 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 301 (448)
Q Consensus 222 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~l~~~~~ 301 (448)
..+..+++|+.|++++|.+....+..+..+++|+.|++++|.++...+..+..+++|+.|++++|.+....+..+..+++
T Consensus 284 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~ 363 (844)
T 3j0a_A 284 RVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEK 363 (844)
T ss_dssp CCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCC
T ss_pred hhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCC
Confidence 77889999999999999998887888999999999999999988766777889999999999999988777777888999
Q ss_pred CCEeeccCCCCCcch----------------------------------------hhhhcCCCCCCEEeccCCCCChHHH
Q 013171 302 LKCLELSDTQVGSSG----------------------------------------LRHLSGLTNLESINLSFTGISDGSL 341 (448)
Q Consensus 302 L~~L~l~~~~~~~~~----------------------------------------~~~l~~~~~L~~L~l~~~~~~~~~~ 341 (448)
|+.|++++|.+.... ...+..+++|+.|++++|.+.....
T Consensus 364 L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 443 (844)
T 3j0a_A 364 LQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSG 443 (844)
T ss_dssp CCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCS
T ss_pred CCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccc
Confidence 999999988765321 1123467889999999987764322
Q ss_pred H-HHhCCCCCcEeEccCCCCChh-----hHHHhhCCCCCCEEEcCCCCCChHHHHhhhCCCCCCEEeeCCCCCChh
Q 013171 342 R-KLAGLSSLKSLNLDARQITDT-----GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 411 (448)
Q Consensus 342 ~-~~~~~~~L~~L~l~~~~l~~~-----~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 411 (448)
. .+..+++|+.|++++|.+... .+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++++.
T Consensus 444 ~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l 519 (844)
T 3j0a_A 444 DQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVL 519 (844)
T ss_dssp SSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSC
T ss_pred ccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCcc
Confidence 1 223456666666666665421 112334455555555555555554444455555555555555555543
No 23
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=7.5e-34 Score=282.99 Aligned_cols=352 Identities=15% Similarity=0.118 Sum_probs=282.0
Q ss_pred HhcCCCccEEEcccCCCCh-----------------HHhHhcc--CCCCCCeEeccCCcccChhHHHhhcCCCCCCEEeC
Q 013171 53 ASQGSSLLSVDLSGSDVTD-----------------SGLIHLK--DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113 (448)
Q Consensus 53 ~~~~~~l~~L~l~~~~~~~-----------------~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l 113 (448)
...+++|++|+++++++++ .+|..++ ++++|++|+|++| .+....+..|.++++|++|++
T Consensus 444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N-~l~~~iP~~l~~L~~L~~L~L 522 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNC-PNMTQLPDFLYDLPELQSLNI 522 (876)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESC-TTCCSCCGGGGGCSSCCEEEC
T ss_pred HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCC-CCCccChHHHhCCCCCCEEEC
Confidence 3568899999999999998 3777777 9999999999997 556666788999999999999
Q ss_pred CCCccccH-HHHHHHhCCC-------CCcEEecCCccccccchh--hccCCCCCcEEeccCCCccCccccccCcCCCCcc
Q 013171 114 RRNNAITA-QGMKAFAGLI-------NLVKLDLERCTRIHGGLV--NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183 (448)
Q Consensus 114 ~~~~~~~~-~~~~~~~~l~-------~L~~L~l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 183 (448)
++|..+++ ..|..+.+++ +|++|++++|... ..+. .+..+++|++|++++|. +. ..+ .+..+++|+
T Consensus 523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~-l~-~lp-~~~~L~~L~ 598 (876)
T 4ecn_A 523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNK-VR-HLE-AFGTNVKLT 598 (876)
T ss_dssp TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSC-CC-BCC-CCCTTSEES
T ss_pred cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCC-cc-cch-hhcCCCcce
Confidence 99974455 6777666554 9999999998765 6666 79999999999999865 44 333 888999999
Q ss_pred EEEecCCCCChHHHHhccCCCC-CCeEecCCCCCchhHHHHHhcCC--CCCEEEccCccCChhhHHh---hh--cCCCCc
Q 013171 184 SLQISCSKVTDSGIAYLKGLQK-LTLLNLEGCPVTAACLDSLSALG--SLFYLNLNRCQLSDDGCEK---FS--KIGSLK 255 (448)
Q Consensus 184 ~L~l~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~---l~--~~~~L~ 255 (448)
.|++++|.+. ..+..+..+++ |+.|++++|.+.. .+..+...+ +|+.|++++|.+.+..+.. +. ..++|+
T Consensus 599 ~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~-lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~ 676 (876)
T 4ecn_A 599 DLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAS 676 (876)
T ss_dssp EEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCS-CCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEE
T ss_pred EEECcCCccc-cchHHHhhccccCCEEECcCCCCCc-CchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcC
Confidence 9999999988 55666888888 9999999998874 355555543 4999999999987644321 22 345899
Q ss_pred EEEccCCCcChhHHHHhhCCCCCcEEeccCCccCcchhhhhhC-------CCCCCEeeccCCCCCcchhhhhc--CCCCC
Q 013171 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG-------LCNLKCLELSDTQVGSSGLRHLS--GLTNL 326 (448)
Q Consensus 256 ~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~l~~-------~~~L~~L~l~~~~~~~~~~~~l~--~~~~L 326 (448)
.|++++|.++......+..+++|+.|++++|.+.......+.. +++|+.|++++|.+.. .+..+. .+++|
T Consensus 677 ~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~-lp~~l~~~~l~~L 755 (876)
T 4ecn_A 677 TVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYL 755 (876)
T ss_dssp EEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCC-CCGGGSTTTCTTC
T ss_pred EEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCcc-chHHhhhccCCCc
Confidence 9999999998655555678999999999999887443333332 2389999999999985 455665 89999
Q ss_pred CEEeccCCCCChHHHHHHhCCCCCcEeEccC------CCCChhhHHHhhCCCCCCEEEcCCCCCChHHHHhhhCCCCCCE
Q 013171 327 ESINLSFTGISDGSLRKLAGLSSLKSLNLDA------RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 400 (448)
Q Consensus 327 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~------~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 400 (448)
+.|++++|.+.. .+..+..+++|+.|++++ |.+.+..+..+..+++|+.|++++|++.. .|..+ .++|+.
T Consensus 756 ~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~-Ip~~l--~~~L~~ 831 (876)
T 4ecn_A 756 SNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEKL--TPQLYI 831 (876)
T ss_dssp CEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCB-CCSCC--CSSSCE
T ss_pred CEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCc-cCHhh--cCCCCE
Confidence 999999999987 466778899999999976 66777667788899999999999999954 45555 379999
Q ss_pred EeeCCCCCChhHHHhh
Q 013171 401 LEICGGGLTDAGVKHI 416 (448)
Q Consensus 401 L~l~~~~~~~~~~~~l 416 (448)
|++++|++....+..+
T Consensus 832 LdLs~N~l~~i~~~~~ 847 (876)
T 4ecn_A 832 LDIADNPNISIDVTSV 847 (876)
T ss_dssp EECCSCTTCEEECGGG
T ss_pred EECCCCCCCccChHHc
Confidence 9999999876544443
No 24
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=100.00 E-value=1e-32 Score=270.24 Aligned_cols=396 Identities=19% Similarity=0.177 Sum_probs=285.9
Q ss_pred CCChHHHHHHHhcCCCccEEEcccCCCChHHhHhccC-CCC-CCeEeccCCcccChhHHHhh-cCCCCCCEEeCCCCccc
Q 013171 43 GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKD-CSN-LQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAI 119 (448)
Q Consensus 43 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~-~~~-L~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~ 119 (448)
+....|...+...++++++|+++++.+++.....+++ ++. |++|++++|..+.......+ ..+++|++|++++|...
T Consensus 98 ~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~ 177 (592)
T 3ogk_B 98 GYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFS 177 (592)
T ss_dssp CBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEE
T ss_pred ccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECcccccc
Confidence 3445677777778899999999988888877777765 455 99999988865554444433 57889999999988642
Q ss_pred cH---HHHHHHhCCCCCcEEecCCcccc----ccchhhccCCCCCcEEeccCCCccCccccccCcCCCCccEEEecCCCC
Q 013171 120 TA---QGMKAFAGLINLVKLDLERCTRI----HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKV 192 (448)
Q Consensus 120 ~~---~~~~~~~~l~~L~~L~l~~~~~~----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 192 (448)
.. ........+++|++|+++.+... ......+..+++|++|++.+|.... .+..+..+++|+.|++.....
T Consensus 178 ~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~--l~~~~~~~~~L~~L~l~~~~~ 255 (592)
T 3ogk_B 178 EKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE--LVGFFKAAANLEEFCGGSLNE 255 (592)
T ss_dssp CCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG--GHHHHHHCTTCCEEEECBCCC
T ss_pred CcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH--HHHHHhhhhHHHhhccccccc
Confidence 11 14455667889999999876543 2223345678899999998854332 335567788899998874322
Q ss_pred C---hHHHHhccCCCCCCeEecCCCCCchhHHHHHhcCCCCCEEEccCccCChhhH-HhhhcCCCCcEEEccCCCcChhH
Q 013171 193 T---DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC-EKFSKIGSLKVLNLGFNEITDEC 268 (448)
Q Consensus 193 ~---~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~ 268 (448)
. ......+..+++|+.+.+.+.... ..+..+..+++|++|++++|.+..... ..+..+++|+.|++.+ .+.+..
T Consensus 256 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~-~~~~~~ 333 (592)
T 3ogk_B 256 DIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRN-VIGDRG 333 (592)
T ss_dssp CTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEG-GGHHHH
T ss_pred ccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccC-ccCHHH
Confidence 1 122234567788888888775332 335566788999999999998776554 3467899999999984 344333
Q ss_pred H-HHhhCCCCCcEEeccC-----------CccCcchhhh-hhCCCCCCEeeccCCCCCcchhhhhcC-CCCCCEEecc--
Q 013171 269 L-VHLKGLTNLESLNLDS-----------CGIGDEGLVN-LTGLCNLKCLELSDTQVGSSGLRHLSG-LTNLESINLS-- 332 (448)
Q Consensus 269 ~-~~l~~~~~L~~l~l~~-----------~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~l~~-~~~L~~L~l~-- 332 (448)
. .....+++|++|++.+ +.++...... ...+++|+.|.+..+.+++..+..+.. +++|+.|+++
T Consensus 334 l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~ 413 (592)
T 3ogk_B 334 LEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLL 413 (592)
T ss_dssp HHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEEC
T ss_pred HHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeec
Confidence 3 3346788999999993 4555444444 346899999999888888777776655 8999999996
Q ss_pred --CCCCCh-----HHHHHHhCCCCCcEeEccCC--CCChhhHHHhh-CCCCCCEEEcCCCCCChHH-HHhhhCCCCCCEE
Q 013171 333 --FTGISD-----GSLRKLAGLSSLKSLNLDAR--QITDTGLAALT-SLTGLTHLDLFGARITDSG-AAYLRNFKNLRSL 401 (448)
Q Consensus 333 --~~~~~~-----~~~~~~~~~~~L~~L~l~~~--~l~~~~~~~l~-~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L 401 (448)
.+.+++ .....+..+++|+.|+++.| .+++.....+. .+++|+.|++++|.+++.. +..+..+++|++|
T Consensus 414 ~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L 493 (592)
T 3ogk_B 414 DREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKL 493 (592)
T ss_dssp SCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEE
T ss_pred CCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCee
Confidence 445554 23444667999999999754 37777666665 5899999999999998754 4445889999999
Q ss_pred eeCCCCCChhHHHhh-hcCCCCCeecccCCCCCCHHHHHHHHh
Q 013171 402 EICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLELISG 443 (448)
Q Consensus 402 ~l~~~~~~~~~~~~l-~~~~~L~~l~l~~~~~l~~~~~~~l~~ 443 (448)
++++|.+++.....+ ..+++|+.|++++| .+++.+++.+..
T Consensus 494 ~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n-~it~~~~~~l~~ 535 (592)
T 3ogk_B 494 EMRGCCFSERAIAAAVTKLPSLRYLWVQGY-RASMTGQDLMQM 535 (592)
T ss_dssp EEESCCCBHHHHHHHHHHCSSCCEEEEESC-BCCTTCTTGGGG
T ss_pred eccCCCCcHHHHHHHHHhcCccCeeECcCC-cCCHHHHHHHHH
Confidence 999999886655444 67999999999999 499888776654
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.3e-33 Score=272.33 Aligned_cols=372 Identities=17% Similarity=0.137 Sum_probs=258.0
Q ss_pred CCCccEEEcccCCCChHHhHhccCCCCCCeEeccCCcccChhHHHhhcCCCCCCEEeCCCCccccHHHHHHHhCCCCCcE
Q 013171 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (448)
Q Consensus 56 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 135 (448)
++++++|+++++.+++..+..++.+++|++|++++| .+....+..|..+++|++|++++|... . .+.. .+++|++
T Consensus 51 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~-lp~~--~l~~L~~ 125 (562)
T 3a79_B 51 PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVSHNRLQ-N-ISCC--PMASLRH 125 (562)
T ss_dssp CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECTTSCCC-E-ECSC--CCTTCSE
T ss_pred CCCcCEEECCCCCccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEECCCCcCC-c-cCcc--ccccCCE
Confidence 378999999999888777778889999999999887 677777888888999999999988753 2 3333 7889999
Q ss_pred EecCCccccccc-hhhccCCCCCcEEeccCCCccCccccccCcCCCCc--cEEEecCCCC--ChHHHHhcc---------
Q 013171 136 LDLERCTRIHGG-LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL--KSLQISCSKV--TDSGIAYLK--------- 201 (448)
Q Consensus 136 L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--~~~~~~~l~--------- 201 (448)
|++++|...... +..+..+++|++|+++++. +... .+..+++| +.|++++|.+ .+..+..+.
T Consensus 126 L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l 201 (562)
T 3a79_B 126 LDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK-FRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHL 201 (562)
T ss_dssp EECCSSCCSBCCCCGGGGGCTTCCEEEEECSB-CCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEE
T ss_pred EECCCCCccccCchHhhcccCcccEEecCCCc-cccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEE
Confidence 999987655422 4678888999999998844 3332 33444444 8999888877 333332232
Q ss_pred -----------------CCCCCCeEecCCCCCc----hhHHHHHhcCC---------------------------CCCEE
Q 013171 202 -----------------GLQKLTLLNLEGCPVT----AACLDSLSALG---------------------------SLFYL 233 (448)
Q Consensus 202 -----------------~~~~L~~L~l~~~~~~----~~~~~~~~~~~---------------------------~L~~L 233 (448)
.+++|+.++++++... ......+..++ +|++|
T Consensus 202 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L 281 (562)
T 3a79_B 202 VFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYL 281 (562)
T ss_dssp EECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEE
T ss_pred EecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEE
Confidence 2334555555554210 01112233333 45555
Q ss_pred EccCccCChhhHHhh-----hcC--------------------------CCCcEEEccCCCcChhHHHHhhCCCCCcEEe
Q 013171 234 NLNRCQLSDDGCEKF-----SKI--------------------------GSLKVLNLGFNEITDECLVHLKGLTNLESLN 282 (448)
Q Consensus 234 ~l~~~~~~~~~~~~l-----~~~--------------------------~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~ 282 (448)
++++|.+.+..+..+ ..+ .+|+.|+++++.+.... ....+++|++|+
T Consensus 282 ~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ 359 (562)
T 3a79_B 282 NIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLN 359 (562)
T ss_dssp EEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEE
T ss_pred EEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEE
Confidence 555554442222211 111 22344444443332111 015678899999
Q ss_pred ccCCccCcchhhhhhCCCCCCEeeccCCCCCcc--hhhhhcCCCCCCEEeccCCCCCh-HHHHHHhCCCCCcEeEccCCC
Q 013171 283 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS--GLRHLSGLTNLESINLSFTGISD-GSLRKLAGLSSLKSLNLDARQ 359 (448)
Q Consensus 283 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~ 359 (448)
+++|.+....+..+..+++|+.|++++|.+... .+..+..+++|+.|++++|.+.. .....+..+++|+.|++++|.
T Consensus 360 l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~ 439 (562)
T 3a79_B 360 FTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNM 439 (562)
T ss_dssp CCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSC
T ss_pred CCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCC
Confidence 999988876777788889999999999988763 24567888999999999998876 333456678999999999999
Q ss_pred CChhhHHHhhCCCCCCEEEcCCCCCChHHHHhhhCCCCCCEEeeCCCCCChhHHHhhhcCCCCCeecccCCCCCCHHHHH
Q 013171 360 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 439 (448)
Q Consensus 360 l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~l~~~~~~ 439 (448)
+++..+..+. ++|+.|++++|+++.. +..+..+++|++|++++|+++...+..+..+++|+.+++++||.-.+....
T Consensus 440 l~~~~~~~l~--~~L~~L~L~~N~l~~i-p~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 516 (562)
T 3a79_B 440 LTGSVFRCLP--PKVKVLDLHNNRIMSI-PKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGI 516 (562)
T ss_dssp CCGGGGSSCC--TTCSEEECCSSCCCCC-CTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHHH
T ss_pred CCcchhhhhc--CcCCEEECCCCcCccc-ChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcchH
Confidence 8865443332 6899999999999864 555558999999999999999764444889999999999999877666655
Q ss_pred HH
Q 013171 440 LI 441 (448)
Q Consensus 440 ~l 441 (448)
.+
T Consensus 517 ~~ 518 (562)
T 3a79_B 517 RY 518 (562)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 26
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.4e-32 Score=265.05 Aligned_cols=368 Identities=17% Similarity=0.140 Sum_probs=266.6
Q ss_pred ccceeecCCCCCCChHHHHHHHhcCCCccEEEcccCCCChHHhHhccCCCCCCeEeccCCcccChhHHHhhcCCCCCCEE
Q 013171 32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSL 111 (448)
Q Consensus 32 ~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 111 (448)
.++.+.+..+. +..... .....++++++|+++++++++..+..++.+++|++|++++| .+....+..|+.+++|++|
T Consensus 27 ~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L 103 (549)
T 2z81_A 27 AMKSLDLSFNK-ITYIGH-GDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYL 103 (549)
T ss_dssp TCCEEECCSSC-CCEECS-STTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCSCCHHHHTTCTTCCEE
T ss_pred CccEEECcCCc-cCccCh-hhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC-ccCccCHHHhccCCCCcEE
Confidence 36666665543 111110 11246789999999999998877788899999999999997 6777778889999999999
Q ss_pred eCCCCccccHHHHHHHhCCCCCcEEecCCccccccch-hhccCCCCCcEEeccCCCccCccccccCcC------------
Q 013171 112 SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGL-VNLKGLMKLESLNIKWCNCITDSDMKPLSG------------ 178 (448)
Q Consensus 112 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~------------ 178 (448)
++++|.......+..+.++++|++|++++|......+ ..+..+++|++|+++++. +....+..+..
T Consensus 104 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~l~~n 182 (549)
T 2z81_A 104 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS-LRNYQSQSLKSIRDIHHLTLHLS 182 (549)
T ss_dssp ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT-CCEECTTTTTTCSEEEEEEEECS
T ss_pred ECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCc-ccccChhhhhccccCceEecccC
Confidence 9999875432334567889999999998876444443 567888899999988744 44444444444
Q ss_pred ------------CCCccEEEecCCCCChHH---------------------------H----HhccCC------------
Q 013171 179 ------------LTNLKSLQISCSKVTDSG---------------------------I----AYLKGL------------ 203 (448)
Q Consensus 179 ------------~~~L~~L~l~~~~~~~~~---------------------------~----~~l~~~------------ 203 (448)
+++|++|++++|.+.+.. + ..+..+
T Consensus 183 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~ 262 (549)
T 2z81_A 183 ESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCT 262 (549)
T ss_dssp BSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCE
T ss_pred cccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccc
Confidence 445555555554443210 0 000001
Q ss_pred -----------------------------------------------CCCCeEecCCCCCchhHHHHHhcCCCCCEEEcc
Q 013171 204 -----------------------------------------------QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236 (448)
Q Consensus 204 -----------------------------------------------~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 236 (448)
++|+.++++++.+.......+..+++|+.|+++
T Consensus 263 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls 342 (549)
T 2z81_A 263 LNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLS 342 (549)
T ss_dssp EECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECC
T ss_pred ccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEcc
Confidence 123333333333332222333578999999999
Q ss_pred CccCChhhHHh---hhcCCCCcEEEccCCCcChhHH--HHhhCCCCCcEEeccCCccCcchhhhhhCCCCCCEeeccCCC
Q 013171 237 RCQLSDDGCEK---FSKIGSLKVLNLGFNEITDECL--VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 311 (448)
Q Consensus 237 ~~~~~~~~~~~---l~~~~~L~~L~l~~~~~~~~~~--~~l~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 311 (448)
+|.+.+..+.. +..+++|+.|++++|.+++... ..+..+++|+.|++++|.+.. .+..+..+++|+.|++++|.
T Consensus 343 ~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~~~~L~~L~Ls~N~ 421 (549)
T 2z81_A 343 ENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP-MPDSCQWPEKMRFLNLSSTG 421 (549)
T ss_dssp SSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCC-CCSCCCCCTTCCEEECTTSC
T ss_pred CCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCcc-CChhhcccccccEEECCCCC
Confidence 99998765433 6778999999999999986543 458899999999999998873 45567788999999999998
Q ss_pred CCcchhhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEccCCCCChhhHHHhhCCCCCCEEEcCCCCCChHHHHh
Q 013171 312 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391 (448)
Q Consensus 312 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 391 (448)
+..... .+ .++|+.|++++|.+.+. ...+++|++|++++|.++... ....+++|+.|++++|++++..+..
T Consensus 422 l~~l~~-~~--~~~L~~L~Ls~N~l~~~----~~~l~~L~~L~Ls~N~l~~ip--~~~~l~~L~~L~Ls~N~l~~~~~~~ 492 (549)
T 2z81_A 422 IRVVKT-CI--PQTLEVLDVSNNNLDSF----SLFLPRLQELYISRNKLKTLP--DASLFPVLLVMKISRNQLKSVPDGI 492 (549)
T ss_dssp CSCCCT-TS--CTTCSEEECCSSCCSCC----CCCCTTCCEEECCSSCCSSCC--CGGGCTTCCEEECCSSCCCCCCTTG
T ss_pred cccccc-hh--cCCceEEECCCCChhhh----cccCChhcEEECCCCccCcCC--CcccCccCCEEecCCCccCCcCHHH
Confidence 875322 21 36899999999988764 257899999999999998542 2457899999999999999987888
Q ss_pred hhCCCCCCEEeeCCCCCChhHH
Q 013171 392 LRNFKNLRSLEICGGGLTDAGV 413 (448)
Q Consensus 392 ~~~~~~L~~L~l~~~~~~~~~~ 413 (448)
+..+++|+.|++++|++....+
T Consensus 493 ~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 493 FDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp GGGCTTCCEEECCSSCBCCCHH
T ss_pred HhcCcccCEEEecCCCccCCCc
Confidence 9999999999999999876544
No 27
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=3.8e-31 Score=250.60 Aligned_cols=326 Identities=31% Similarity=0.395 Sum_probs=273.9
Q ss_pred hcCCCccEEEcccCCCChHHhHhccCCCCCCeEeccCCcccChhHHHhhcCCCCCCEEeCCCCccccHHHHHHHhCCCCC
Q 013171 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133 (448)
Q Consensus 54 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L 133 (448)
..++++++|+++++.+++..+ +..+++|++|++++| .+....+ +..+++|++|++++|... ... .+.++++|
T Consensus 65 ~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~L~~n~l~-~~~--~~~~l~~L 136 (466)
T 1o6v_A 65 EYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNN-QIADITP--LANLTNLTGLTLFNNQIT-DID--PLKNLTNL 136 (466)
T ss_dssp GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCC-CCG--GGTTCTTC
T ss_pred hhhcCCCEEECCCCccCCchh--hhccccCCEEECCCC-ccccChh--hcCCCCCCEEECCCCCCC-CCh--HHcCCCCC
Confidence 468899999999999987654 899999999999997 5665544 899999999999999753 332 28899999
Q ss_pred cEEecCCccccccchhhccCCCCCcEEeccCCCccCccccccCcCCCCccEEEecCCCCChHHHHhccCCCCCCeEecCC
Q 013171 134 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213 (448)
Q Consensus 134 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 213 (448)
++|++++|.... ...+..+++|++|++.+ .... ...+..+++|++|++++|.+.+. ..+..+++|++|++++
T Consensus 137 ~~L~l~~n~l~~--~~~~~~l~~L~~L~l~~--~~~~--~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~ 208 (466)
T 1o6v_A 137 NRLELSSNTISD--ISALSGLTSLQQLSFGN--QVTD--LKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATN 208 (466)
T ss_dssp SEEEEEEEEECC--CGGGTTCTTCSEEEEEE--SCCC--CGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCS
T ss_pred CEEECCCCccCC--ChhhccCCcccEeecCC--cccC--chhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecC
Confidence 999999875433 34588999999999964 2332 23478899999999999988764 3578899999999999
Q ss_pred CCCchhHHHHHhcCCCCCEEEccCccCChhhHHhhhcCCCCcEEEccCCCcChhHHHHhhCCCCCcEEeccCCccCcchh
Q 013171 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293 (448)
Q Consensus 214 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~ 293 (448)
+.+....+ +..+++|+.|++++|.+... ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+....+
T Consensus 209 n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~ 282 (466)
T 1o6v_A 209 NQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP 282 (466)
T ss_dssp SCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG
T ss_pred Cccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc
Confidence 98876543 67899999999999998764 457889999999999999886544 7889999999999998876544
Q ss_pred hhhhCCCCCCEeeccCCCCCcchhhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEccCCCCChhhHHHhhCCCC
Q 013171 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 373 (448)
Q Consensus 294 ~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~ 373 (448)
+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+++. ..+..+++
T Consensus 283 --~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~ 354 (466)
T 1o6v_A 283 --LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTN 354 (466)
T ss_dssp --GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTT
T ss_pred --ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCC
Confidence 7789999999999999887544 6788999999999999887654 77899999999999999885 56889999
Q ss_pred CCEEEcCCCCCChHHHHhhhCCCCCCEEeeCCCCCChh
Q 013171 374 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 411 (448)
Q Consensus 374 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 411 (448)
|+.|++++|++.+..+ +..+++|+.|++++|.+++.
T Consensus 355 L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 355 INWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp CCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred CCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence 9999999999998766 78899999999999988763
No 28
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.4e-34 Score=282.25 Aligned_cols=186 Identities=23% Similarity=0.266 Sum_probs=159.6
Q ss_pred hcCCCCCEEEccCccCChhh--HHhhhcCCCCcEEEccCCCcChhHHHHhhCCCCCcEEeccCCccCcchh-hhhhCCCC
Q 013171 225 SALGSLFYLNLNRCQLSDDG--CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL-VNLTGLCN 301 (448)
Q Consensus 225 ~~~~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~-~~l~~~~~ 301 (448)
..+++|+.|++++|.+.... +..+..+++|+.|++++|.+.+.... +..+++|+.|++++|.+....+ ..+..+++
T Consensus 344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 422 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 422 (570)
T ss_dssp CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTT
T ss_pred ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCC
Confidence 46788889999888876543 56678899999999999988765433 7889999999999998765544 45778999
Q ss_pred CCEeeccCCCCCcchhhhhcCCCCCCEEeccCCCCC-hHHHHHHhCCCCCcEeEccCCCCChhhHHHhhCCCCCCEEEcC
Q 013171 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS-DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 380 (448)
Q Consensus 302 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~ 380 (448)
|+.|++++|.+....+..+..+++|+.|++++|.+. ...+..+..+++|+.|++++|.+++..+..+..+++|+.|+++
T Consensus 423 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 502 (570)
T 2z63_A 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMA 502 (570)
T ss_dssp CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCC
Confidence 999999999988877788899999999999999876 3455677889999999999999998877888999999999999
Q ss_pred CCCCChHHHHhhhCCCCCCEEeeCCCCCChh
Q 013171 381 GARITDSGAAYLRNFKNLRSLEICGGGLTDA 411 (448)
Q Consensus 381 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 411 (448)
+|.+++..+..+..+++|+.|++++|++...
T Consensus 503 ~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 533 (570)
T 2z63_A 503 SNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 533 (570)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCcCCCCCHHHhhcccCCcEEEecCCcccCC
Confidence 9999988778889999999999999988753
No 29
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=3e-31 Score=241.99 Aligned_cols=304 Identities=23% Similarity=0.324 Sum_probs=186.8
Q ss_pred ccCCCCCCeEeccCCcccChhHHHhhcCCCCCCEEeCCCCccccHHHHHHHhCCCCCcEEecCCccccccchhhccCCCC
Q 013171 77 LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMK 156 (448)
Q Consensus 77 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 156 (448)
+..+++|++|+++++ .+... ..+..+++|++|++++|... ...+ +..+++|++|++++|.... ...+..+++
T Consensus 40 ~~~l~~L~~L~l~~~-~i~~~--~~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~--~~~~~~l~~ 111 (347)
T 4fmz_A 40 QEELESITKLVVAGE-KVASI--QGIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITD--ISALQNLTN 111 (347)
T ss_dssp HHHHTTCSEEECCSS-CCCCC--TTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCC--CGGGTTCTT
T ss_pred chhcccccEEEEeCC-ccccc--hhhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccC--chHHcCCCc
Confidence 346778888888876 44443 23677788888888887642 2222 6677777777777654322 234555566
Q ss_pred CcEEeccCCCccCccccccCcCCCCccEEEecCCCCChHHHHhccCCCCCCeEecCCCCCchhHHHHHhcCCCCCEEEcc
Q 013171 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236 (448)
Q Consensus 157 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 236 (448)
|++|++++|. +.... .+..+++|++|++++|... .. ...+..+++|++|+++
T Consensus 112 L~~L~l~~n~-i~~~~--~~~~l~~L~~L~l~~n~~~------------------------~~-~~~~~~l~~L~~L~l~ 163 (347)
T 4fmz_A 112 LRELYLNEDN-ISDIS--PLANLTKMYSLNLGANHNL------------------------SD-LSPLSNMTGLNYLTVT 163 (347)
T ss_dssp CSEEECTTSC-CCCCG--GGTTCTTCCEEECTTCTTC------------------------CC-CGGGTTCTTCCEEECC
T ss_pred CCEEECcCCc-ccCch--hhccCCceeEEECCCCCCc------------------------cc-ccchhhCCCCcEEEec
Confidence 6666665533 22111 1444555555555544222 11 1124445555555555
Q ss_pred CccCChhhHHhhhcCCCCcEEEccCCCcChhHHHHhhCCCCCcEEeccCCccCcchhhhhhCCCCCCEeeccCCCCCcch
Q 013171 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 316 (448)
Q Consensus 237 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 316 (448)
+|.+....+ +..+++|+.|++++|.+.+... +..+++|+.+++.++.+....+ +..+++|+.|++++|.+....
T Consensus 164 ~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~ 237 (347)
T 4fmz_A 164 ESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLS 237 (347)
T ss_dssp SSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG
T ss_pred CCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCc
Confidence 555443322 4455556666665555543322 4555666666666665544332 556666777777776665543
Q ss_pred hhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEccCCCCChhhHHHhhCCCCCCEEEcCCCCCChHHHHhhhCCC
Q 013171 317 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 396 (448)
Q Consensus 317 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 396 (448)
+ +..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+.+..+..+..++
T Consensus 238 ~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 311 (347)
T 4fmz_A 238 P--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLT 311 (347)
T ss_dssp G--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCT
T ss_pred c--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccc
Confidence 3 56667777777777766653 3466677777777777777764 3466778888888888888777777777888
Q ss_pred CCCEEeeCCCCCChhHHHhhhcCCCCCeecccCC
Q 013171 397 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430 (448)
Q Consensus 397 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~ 430 (448)
+|+.|++++|++++..+ ++.+++|+.|++++|
T Consensus 312 ~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 312 NLTTLFLSQNHITDIRP--LASLSKMDSADFANQ 343 (347)
T ss_dssp TCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC
T ss_pred cCCEEEccCCccccccC--hhhhhccceeehhhh
Confidence 88888888888777654 677888888888887
No 30
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=100.00 E-value=6.2e-32 Score=264.83 Aligned_cols=390 Identities=19% Similarity=0.199 Sum_probs=235.3
Q ss_pred HHHHHHhcCCCccEEEcccCCCChHHhHhcc-CCCCCCeEeccCCcccChhHHHhh-cCCCCCCEEeCCCCccccHHHHH
Q 013171 48 WMDVIASQGSSLLSVDLSGSDVTDSGLIHLK-DCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMK 125 (448)
Q Consensus 48 ~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~ 125 (448)
|...+...++++++|+++++.+++..+..+. .+++|++|++++|..+.......+ ..+++|++|++++|.+ ++..+.
T Consensus 96 ~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i-~~~~~~ 174 (594)
T 2p1m_B 96 WIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDV-DDVSGH 174 (594)
T ss_dssp HHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEE-ECCCGG
T ss_pred HHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCcc-CCcchH
Confidence 4444444455555555555555544444443 455555555555433333322222 3455555555555442 111111
Q ss_pred HH----hCCCCCcEEecCCcc-ccc-cch-hhccCCCCCcEEeccCCCccCccccccCcCCCCccEEEecCCCC--Ch--
Q 013171 126 AF----AGLINLVKLDLERCT-RIH-GGL-VNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKV--TD-- 194 (448)
Q Consensus 126 ~~----~~l~~L~~L~l~~~~-~~~-~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--~~-- 194 (448)
.+ ..+++|++|++++|. ... ... .....+++|++|++.+|..... .+..+..+++|+.|++..+.. ..
T Consensus 175 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~ 253 (594)
T 2p1m_B 175 WLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK-LATLLQRAPQLEELGTGGYTAEVRPDV 253 (594)
T ss_dssp GGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHH-HHHHHHHCTTCSEEECSBCCCCCCHHH
T ss_pred HHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHH-HHHHHhcCCcceEcccccccCccchhh
Confidence 11 234455555555443 000 011 1112345555555554433222 223333445555555433211 10
Q ss_pred --HHHHhccCCCCCCeE-ecCCCCCchhHHHHHhcCCCCCEEEccCccCChhhHHh-hhcCCCCcEEEccCCCcChhHHH
Q 013171 195 --SGIAYLKGLQKLTLL-NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK-FSKIGSLKVLNLGFNEITDECLV 270 (448)
Q Consensus 195 --~~~~~l~~~~~L~~L-~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~ 270 (448)
..+..+.++++|+.+ .+.+... ...+..+..+++|+.|++++|.+.+..... +..+++|+.|++.++ +.+....
T Consensus 254 ~~~l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~ 331 (594)
T 2p1m_B 254 YSGLSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLE 331 (594)
T ss_dssp HHHHHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHH
T ss_pred HHHHHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHH
Confidence 122244555566655 2322211 122333446789999999999877654433 567899999999987 4443333
Q ss_pred H-hhCCCCCcEEeccC---------CccCcchhhhhh-CCCCCCEeeccCCCCCcchhhhhc-CCCCCCEEecc--C---
Q 013171 271 H-LKGLTNLESLNLDS---------CGIGDEGLVNLT-GLCNLKCLELSDTQVGSSGLRHLS-GLTNLESINLS--F--- 333 (448)
Q Consensus 271 ~-l~~~~~L~~l~l~~---------~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~--~--- 333 (448)
. ...+++|+.|++.+ +.+++.....+. .+++|+.|.+..+.+++.....+. .+++|+.|+++ +
T Consensus 332 ~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~ 411 (594)
T 2p1m_B 332 VLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKA 411 (594)
T ss_dssp HHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTC
T ss_pred HHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCC
Confidence 3 34588999998833 345554444444 489999998888888776666654 58999999998 3
Q ss_pred -CCCC----h-HHHHHHhCCCCCcEeEccCCCCChhhHHHhhC-CCCCCEEEcCCCCCChHHHHhh-hCCCCCCEEeeCC
Q 013171 334 -TGIS----D-GSLRKLAGLSSLKSLNLDARQITDTGLAALTS-LTGLTHLDLFGARITDSGAAYL-RNFKNLRSLEICG 405 (448)
Q Consensus 334 -~~~~----~-~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~ 405 (448)
+.++ + .....+..+++|+.|++++ .+++.....+.. +++|+.|++++|.+++.....+ ..+++|++|++++
T Consensus 412 ~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~ 490 (594)
T 2p1m_B 412 PDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRD 490 (594)
T ss_dssp CCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEES
T ss_pred cccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcC
Confidence 3455 2 2233456789999999977 788877777765 8999999999999988777666 7799999999999
Q ss_pred CCCChhHHHhh-hcCCCCCeecccCCCCCCHHHHHHHHh
Q 013171 406 GGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLELISG 443 (448)
Q Consensus 406 ~~~~~~~~~~l-~~~~~L~~l~l~~~~~l~~~~~~~l~~ 443 (448)
|.+++..+..+ ..+++|+.|++++| .+++.+++.+..
T Consensus 491 n~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~l~~ 528 (594)
T 2p1m_B 491 CPFGDKALLANASKLETMRSLWMSSC-SVSFGACKLLGQ 528 (594)
T ss_dssp CSCCHHHHHHTGGGGGGSSEEEEESS-CCBHHHHHHHHH
T ss_pred CCCcHHHHHHHHHhCCCCCEEeeeCC-CCCHHHHHHHHH
Confidence 99987766544 56999999999999 569999888744
No 31
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=6.9e-31 Score=239.56 Aligned_cols=305 Identities=29% Similarity=0.344 Sum_probs=201.2
Q ss_pred cCCCccEEEcccCCCChHHhHhccCCCCCCeEeccCCcccChhHHHhhcCCCCCCEEeCCCCccccHHHHHHHhCCCCCc
Q 013171 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134 (448)
Q Consensus 55 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 134 (448)
.++++++|+++++.++.. ..+..+++|++|++++| .+....+ +..+++|++|++++|.... ..++.++++|+
T Consensus 42 ~l~~L~~L~l~~~~i~~~--~~~~~~~~L~~L~l~~n-~i~~~~~--~~~l~~L~~L~L~~n~i~~---~~~~~~l~~L~ 113 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASI--QGIEYLTNLEYLNLNGN-QITDISP--LSNLVKLTNLYIGTNKITD---ISALQNLTNLR 113 (347)
T ss_dssp HHTTCSEEECCSSCCCCC--TTGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCC---CGGGTTCTTCS
T ss_pred hcccccEEEEeCCccccc--hhhhhcCCccEEEccCC-ccccchh--hhcCCcCCEEEccCCcccC---chHHcCCCcCC
Confidence 457899999999988754 34788999999999997 5666544 8899999999999997533 24688999999
Q ss_pred EEecCCccccccchhhccCCCCCcEEeccCCCccCccccccCcCCCCccEEEecCCCCChHHHHhccCCCCCCeEecCCC
Q 013171 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214 (448)
Q Consensus 135 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 214 (448)
+|++++|..... + .+..+++|++|++++|..... ...+..+++|++|+++++.+.+... +..+++|+.|++++|
T Consensus 114 ~L~l~~n~i~~~-~-~~~~l~~L~~L~l~~n~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n 187 (347)
T 4fmz_A 114 ELYLNEDNISDI-S-PLANLTKMYSLNLGANHNLSD--LSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN 187 (347)
T ss_dssp EEECTTSCCCCC-G-GGTTCTTCCEEECTTCTTCCC--CGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTS
T ss_pred EEECcCCcccCc-h-hhccCCceeEEECCCCCCccc--ccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCC
Confidence 999999764432 2 288899999999999765553 3347788888888888887765332 556666777766666
Q ss_pred CCchhHHHHHhcCCCCCEEEccCccCChhhHHhhhcCCCCcEEEccCCCcChhHHHHhhCCCCCcEEeccCCccCcchhh
Q 013171 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294 (448)
Q Consensus 215 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~ 294 (448)
.+..... +..+++|+.+++++|.+....+ +..+++|+.|++++|.+++ ..+
T Consensus 188 ~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~------------------------~~~- 238 (347)
T 4fmz_A 188 QIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD------------------------LSP- 238 (347)
T ss_dssp CCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC------------------------CGG-
T ss_pred ccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCC------------------------Ccc-
Confidence 5544322 4555666666666555544322 4444555555555544433 222
Q ss_pred hhhCCCCCCEeeccCCCCCcchhhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEccCCCCChhhHHHhhCCCCC
Q 013171 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 374 (448)
Q Consensus 295 ~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L 374 (448)
+..+++|+.|++++|.+... ..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..+..+..+++|
T Consensus 239 -~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 313 (347)
T 4fmz_A 239 -LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNL 313 (347)
T ss_dssp -GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTC
T ss_pred -hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccC
Confidence 34455555555555554432 2345556666666666655543 335566667777777776666666666667777
Q ss_pred CEEEcCCCCCChHHHHhhhCCCCCCEEeeCCCCCC
Q 013171 375 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 409 (448)
Q Consensus 375 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 409 (448)
+.|++++|++++..+ +..+++|+.|++++|.++
T Consensus 314 ~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 314 TTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp SEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 777777777666544 556777777777777654
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.3e-32 Score=262.01 Aligned_cols=302 Identities=22% Similarity=0.217 Sum_probs=190.9
Q ss_pred CCCCEEeCCCCccccHHHHHHHhCCCCCcEEecCCccccccchhhccCCCCCcEEeccCCCccCccccccCcCCCCccEE
Q 013171 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185 (448)
Q Consensus 106 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 185 (448)
+++++|++++|.+ ....+..|.++++|++|++++|......+..+..+++|++|+++++ .+.......+..+++|++|
T Consensus 32 ~~l~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 109 (477)
T 2id5_A 32 TETRLLDLGKNRI-KTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKL 109 (477)
T ss_dssp TTCSEEECCSSCC-CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCTTSSTTCTTCCEE
T ss_pred CCCcEEECCCCcc-ceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-cCCccCcccccCCCCCCEE
Confidence 4788888888874 4444567788888888888887655555667777888888888774 3444445556677777777
Q ss_pred EecCCCCChHHHHhccCCCCCCeEecCCCCCchhHHHHHhcCCCCCEEEccCccCChhhHHhhhcCCCCcEEEccCCCcC
Q 013171 186 QISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265 (448)
Q Consensus 186 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 265 (448)
++++|.+....+..+..+++|+.|+++++.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.
T Consensus 110 ~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~ 189 (477)
T 2id5_A 110 DISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN 189 (477)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCC
T ss_pred ECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCc
Confidence 77777776655556667777777777777665554555666667777777776666555555666666666666666655
Q ss_pred hhHHHHhhCCCCCcEEeccCCccCcchhhhhhCCCCCCEeeccCCCCCcchhhhhcCCCCCCEEeccCCCCChHHHHHHh
Q 013171 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345 (448)
Q Consensus 266 ~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 345 (448)
......+..+++|+.|+++++......+.......+|+.|++++|.+.......+..+++|+.|++++|.+....+..+.
T Consensus 190 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 269 (477)
T 2id5_A 190 AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLH 269 (477)
T ss_dssp EECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCT
T ss_pred EeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhcc
Confidence 54444455666666666666544333333333334666666666666554444555666666666666665555444555
Q ss_pred CCCCCcEeEccCCCCChhhHHHhhCCCCCCEEEcCCCCCChHHHHhhhCCCCCCEEeeCCCCCC
Q 013171 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 409 (448)
Q Consensus 346 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 409 (448)
.+++|+.|++++|.+....+..+..+++|+.|++++|.++...+..+..+++|+.|++++|++.
T Consensus 270 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 270 ELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp TCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred ccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 5666666666666666554555556666666666666665554555555666666666666543
No 33
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=4.2e-33 Score=275.51 Aligned_cols=388 Identities=21% Similarity=0.204 Sum_probs=277.6
Q ss_pred CCCccEEEcccCCCChHHhHhccCCCCCCeEeccCCcccChhHHHhhcCCCCCCEEeCCCCccccHHHHHHHhCCCCCcE
Q 013171 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (448)
Q Consensus 56 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 135 (448)
++++++|++++|++++..+..|+++++|++|+|++| .+....+.+|.++++|++|++++|.. ....+.+|.++++|++
T Consensus 51 p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~l-~~l~~~~f~~L~~L~~ 128 (635)
T 4g8a_A 51 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPI-QSLALGAFSGLSSLQK 128 (635)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCC-CEECGGGGTTCTTCCE
T ss_pred CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCcC-CCCCHHHhcCCCCCCE
Confidence 468999999999999877788999999999999997 78888888899999999999999974 4555678899999999
Q ss_pred EecCCccccccchhhccCCCCCcEEeccCCCccCccccccCcCCCCccEEEecCCCCChHHHHhccCCCC----------
Q 013171 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK---------- 205 (448)
Q Consensus 136 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~---------- 205 (448)
|++++|......+..+..+++|++|+++++.......+..+..+++|++|++++|.+.+..+..+..+.+
T Consensus 129 L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~l 208 (635)
T 4g8a_A 129 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 208 (635)
T ss_dssp EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEEC
T ss_pred EECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhc
Confidence 9999986655555568899999999999865444345567788999999999988876543332211111
Q ss_pred -----------------CCeEecCCCCCch-hHH----------------------------------------------
Q 013171 206 -----------------LTLLNLEGCPVTA-ACL---------------------------------------------- 221 (448)
Q Consensus 206 -----------------L~~L~l~~~~~~~-~~~---------------------------------------------- 221 (448)
++.+.+.++.... ...
T Consensus 209 s~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~ 288 (635)
T 4g8a_A 209 SLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 288 (635)
T ss_dssp TTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEE
T ss_pred ccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhh
Confidence 0111111110000 000
Q ss_pred ---------------------------------HHHhcCCCCCEEEccCccCChh-------------------hHHhhh
Q 013171 222 ---------------------------------DSLSALGSLFYLNLNRCQLSDD-------------------GCEKFS 249 (448)
Q Consensus 222 ---------------------------------~~~~~~~~L~~L~l~~~~~~~~-------------------~~~~l~ 249 (448)
..+.....++.|++.++.+... ......
T Consensus 289 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~ 368 (635)
T 4g8a_A 289 AYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV 368 (635)
T ss_dssp ECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCC
T ss_pred hhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccc
Confidence 0112233455555554432110 011223
Q ss_pred cCCCCcEEEccCCCcChh--HHHHhhCCCCCcE-----------------------EeccCCccCcc-hhhhhhCCCCCC
Q 013171 250 KIGSLKVLNLGFNEITDE--CLVHLKGLTNLES-----------------------LNLDSCGIGDE-GLVNLTGLCNLK 303 (448)
Q Consensus 250 ~~~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~-----------------------l~l~~~~~~~~-~~~~l~~~~~L~ 303 (448)
.+++|+.++++.+.+... .+..+..+.+++. +++..+..... ....+..+++++
T Consensus 369 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~ 448 (635)
T 4g8a_A 369 DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 448 (635)
T ss_dssp BCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCC
T ss_pred cccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccc
Confidence 567788888877765321 1222333444444 44444332211 223345667778
Q ss_pred EeeccCCCCCcchhhhhcCCCCCCEEeccCCCCCh-HHHHHHhCCCCCcEeEccCCCCChhhHHHhhCCCCCCEEEcCCC
Q 013171 304 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD-GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 382 (448)
Q Consensus 304 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~ 382 (448)
.+++..|.+....+..+..+++++.|++++|.... ..+..+..+++|+.|++++|.+++..+..+.++++|++|++++|
T Consensus 449 ~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N 528 (635)
T 4g8a_A 449 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 528 (635)
T ss_dssp EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCC
Confidence 88888887776666677788999999999986433 34566788999999999999999988888999999999999999
Q ss_pred CCChHHHHhhhCCCCCCEEeeCCCCCChhHHHhhhcC-CCCCeecccCCCCCCHHHHHHHHhhh
Q 013171 383 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL-SSLTLLNLSQNCNLTDKTLELISGIL 445 (448)
Q Consensus 383 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~l~l~~~~~l~~~~~~~l~~~~ 445 (448)
++++..+..+..+++|++|++++|++++..+..+..+ ++|+.|++++||...+.....+.+++
T Consensus 529 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl 592 (635)
T 4g8a_A 529 NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWI 592 (635)
T ss_dssp CCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHH
T ss_pred cCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHH
Confidence 9999888889999999999999999999888888887 68999999999888887776666554
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.98 E-value=7.1e-32 Score=256.85 Aligned_cols=303 Identities=21% Similarity=0.194 Sum_probs=217.0
Q ss_pred CCCccEEEcccCCCChHHhHhccCCCCCCeEeccCCcccChhHHHhhcCCCCCCEEeCCCCccccHHHHHHHhCCCCCcE
Q 013171 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (448)
Q Consensus 56 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 135 (448)
++++++|+++++++++..+..+..+++|++|+|++| .+....+..|..+++|++|++++|.. ....+..|.++++|++
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~ 108 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNRL-KLIPLGVFTGLSNLTK 108 (477)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCC-CSCCTTSSTTCTTCCE
T ss_pred CCCCcEEECCCCccceECHhHccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCCcC-CccCcccccCCCCCCE
Confidence 457888888888887766677788888888888876 66666677778888888888888764 3333445677888888
Q ss_pred EecCCccccccchhhccCCCCCcEEeccCCCccCccccccCcCCCCccEEEecCCCCChHHHHhccCCCCCCeEecCCCC
Q 013171 136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215 (448)
Q Consensus 136 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 215 (448)
|++++|......+..+..+++|++|+++++ .+....+..+..+++|+.|++++|.+.......+..+++|+.|++.++.
T Consensus 109 L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 187 (477)
T 2id5_A 109 LDISENKIVILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN 187 (477)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEEECCT-TCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCC
T ss_pred EECCCCccccCChhHccccccCCEEECCCC-ccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCc
Confidence 888877655555566777788888888773 4454555667777788888888777776666667777788888887777
Q ss_pred CchhHHHHHhcCCCCCEEEccCccCChhhHHhhhcCCCCcEEEccCCCcChhHHHHhhCCCCCcEEeccCCccCcchhhh
Q 013171 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 295 (448)
Q Consensus 216 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~ 295 (448)
+....+..+..+++|+.|++++|......+.......+|+.|++++|.++......+..+++|+.|++++|.+....+..
T Consensus 188 i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 267 (477)
T 2id5_A 188 INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSM 267 (477)
T ss_dssp CCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTS
T ss_pred CcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhh
Confidence 66655556667777888887777655444444444457777777777776655556777777777777777776666666
Q ss_pred hhCCCCCCEeeccCCCCCcchhhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEccCCCCC
Q 013171 296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 361 (448)
Q Consensus 296 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 361 (448)
+..+++|+.|++.+|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.
T Consensus 268 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 268 LHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp CTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred ccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 677777777777777777766667777777777777777777665566666777777777777665
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=8e-31 Score=242.85 Aligned_cols=315 Identities=16% Similarity=0.106 Sum_probs=241.9
Q ss_pred CCCCCCeEeccCCcccChhHHHhhcCCCCCCEEeCCCCccccHHHHHHHhCCCCCcEEecCCccccccchhhccCCCCCc
Q 013171 79 DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158 (448)
Q Consensus 79 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 158 (448)
.+++++.|+++++ .+.......+..+++|++|++++|.. ....+.++..+++|++|++++|......+..+..+++|+
T Consensus 43 ~l~~l~~l~l~~~-~l~~l~~~~~~~l~~L~~L~L~~n~i-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 43 TLNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQI-EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120 (390)
T ss_dssp GGCCCSEEEEESC-EESEECTHHHHHCCCCSEEECTTSCC-CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred ccCCceEEEecCC-chhhCChhHhcccccCcEEECCCCcc-cccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence 5689999999986 67777777788999999999999874 455556788999999999999876665566788899999
Q ss_pred EEeccCCCccCccccccCcCCCCccEEEecCCCCChHHHHhccCCCCCCeEecCCCCCchhHHHHHhcCCCCCEEEccCc
Q 013171 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238 (448)
Q Consensus 159 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 238 (448)
+|++++| .+.......+..+++|++|++++|.+....+..+..+++|++|+++++.+... .+..+++|+.+++++|
T Consensus 121 ~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n 196 (390)
T 3o6n_A 121 VLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYN 196 (390)
T ss_dssp EEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSS
T ss_pred EEECCCC-ccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccc
Confidence 9999985 44545445567889999999999988877677788889999999998877654 2567788999999888
Q ss_pred cCChhhHHhhhcCCCCcEEEccCCCcChhHHHHhhCCCCCcEEeccCCccCcchhhhhhCCCCCCEeeccCCCCCcchhh
Q 013171 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 318 (448)
Q Consensus 239 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 318 (448)
.+.. +...++|+.|++++|.+.... ....++|+.|+++++.+... ..+..+++|+.|++++|.+.+..+.
T Consensus 197 ~l~~-----~~~~~~L~~L~l~~n~l~~~~---~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~ 266 (390)
T 3o6n_A 197 LLST-----LAIPIAVEELDASHNSINVVR---GPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYH 266 (390)
T ss_dssp CCSE-----EECCSSCSEEECCSSCCCEEE---CCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESG
T ss_pred cccc-----cCCCCcceEEECCCCeeeecc---ccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChh
Confidence 7654 234567888888888776532 12346888888888877653 4567788888888888888877677
Q ss_pred hhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEccCCCCChhhHHHhhCCCCCCEEEcCCCCCChHHHHhhhCCCCC
Q 013171 319 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 398 (448)
Q Consensus 319 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 398 (448)
.+..+++|+.|++++|.+.... ..+..+++|+.|++++|.+... +..+..+++|+.|++++|+++... +..+++|
T Consensus 267 ~~~~l~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L 341 (390)
T 3o6n_A 267 PFVKMQRLERLYISNNRLVALN-LYGQPIPTLKVLDLSHNHLLHV-ERNQPQFDRLENLYLDHNSIVTLK---LSTHHTL 341 (390)
T ss_dssp GGTTCSSCCEEECCSSCCCEEE-CSSSCCTTCCEEECCSSCCCCC-GGGHHHHTTCSEEECCSSCCCCCC---CCTTCCC
T ss_pred HccccccCCEEECCCCcCcccC-cccCCCCCCCEEECCCCcceec-CccccccCcCCEEECCCCccceeC---chhhccC
Confidence 7888888888888888777642 3335678888888888887754 344566788888888888877642 5667888
Q ss_pred CEEeeCCCCCChhHHH
Q 013171 399 RSLEICGGGLTDAGVK 414 (448)
Q Consensus 399 ~~L~l~~~~~~~~~~~ 414 (448)
+.|++++|++......
T Consensus 342 ~~L~l~~N~~~~~~~~ 357 (390)
T 3o6n_A 342 KNLTLSHNDWDCNSLR 357 (390)
T ss_dssp SEEECCSSCEEHHHHH
T ss_pred CEEEcCCCCccchhHH
Confidence 8888888887765433
No 36
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=1.9e-31 Score=258.78 Aligned_cols=345 Identities=17% Similarity=0.146 Sum_probs=250.2
Q ss_pred hcCCCccEEEcccCCCChHHhHhccCCCCCCeEeccCCcccChhHHHhhcCCCCCCEEeCCCCccccHHHHHHHhCCCCC
Q 013171 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133 (448)
Q Consensus 54 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L 133 (448)
..++++++|++++|++++..+..++.+++|++|++++| .+...... .+++|++|++++|.+.....+..++++++|
T Consensus 73 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L 148 (562)
T 3a79_B 73 SFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN-RLQNISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKL 148 (562)
T ss_dssp TTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS-CCCEECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTC
T ss_pred ccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC-cCCccCcc---ccccCCEEECCCCCccccCchHhhcccCcc
Confidence 46789999999999999888888999999999999997 56644332 789999999999986432335789999999
Q ss_pred cEEecCCccccccchhhccCCCCC--cEEeccCCCcc-CccccccC--------------------------cCCCCccE
Q 013171 134 VKLDLERCTRIHGGLVNLKGLMKL--ESLNIKWCNCI-TDSDMKPL--------------------------SGLTNLKS 184 (448)
Q Consensus 134 ~~L~l~~~~~~~~~~~~l~~l~~L--~~L~l~~~~~~-~~~~~~~~--------------------------~~~~~L~~ 184 (448)
++|++++|..... .+..+++| ++|+++++... ....+..+ ..+++|+.
T Consensus 149 ~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~ 225 (562)
T 3a79_B 149 TFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQL 225 (562)
T ss_dssp CEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEE
T ss_pred cEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEE
Confidence 9999999765443 34445555 99999886430 11111111 23445555
Q ss_pred EEecCCC----------------------------CChHHHH---hccCCCCCCeEecCCCCCchhHHH-----------
Q 013171 185 LQISCSK----------------------------VTDSGIA---YLKGLQKLTLLNLEGCPVTAACLD----------- 222 (448)
Q Consensus 185 L~l~~~~----------------------------~~~~~~~---~l~~~~~L~~L~l~~~~~~~~~~~----------- 222 (448)
++++++. +.+.... .....++|++|+++++.+.+..+.
T Consensus 226 L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~ 305 (562)
T 3a79_B 226 SNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALK 305 (562)
T ss_dssp EEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCC
T ss_pred ecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccch
Confidence 5555542 1111100 001123566666655543321111
Q ss_pred --------------------HHhcCCCCCEEEccCccCChhhHHhhhcCCCCcEEEccCCCcChhHHHHhhCCCCCcEEe
Q 013171 223 --------------------SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282 (448)
Q Consensus 223 --------------------~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~ 282 (448)
.+....+|+.|++++|.+.... ....+++|+.|++++|.+++..+..+..+++|+.|+
T Consensus 306 ~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 383 (562)
T 3a79_B 306 SLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLI 383 (562)
T ss_dssp EEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEE
T ss_pred heehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEE
Confidence 1112256888888888765422 126789999999999999887777888999999999
Q ss_pred ccCCccCcc--hhhhhhCCCCCCEeeccCCCCCc-chhhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEccCCC
Q 013171 283 LDSCGIGDE--GLVNLTGLCNLKCLELSDTQVGS-SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359 (448)
Q Consensus 283 l~~~~~~~~--~~~~l~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 359 (448)
+++|.+... .+..+..+++|+.|++++|.+.. .....+..+++|+.|++++|.+.+..+..+. ++|+.|++++|.
T Consensus 384 L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~ 461 (562)
T 3a79_B 384 LQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNR 461 (562)
T ss_dssp CCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSC
T ss_pred CCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCc
Confidence 999998763 34567889999999999999887 4444577889999999999999865443322 699999999999
Q ss_pred CChhhHHHhhCCCCCCEEEcCCCCCChHHHHhhhCCCCCCEEeeCCCCCCh
Q 013171 360 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 410 (448)
Q Consensus 360 l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 410 (448)
++.. +..+..+++|+.|++++|+++...+..+..+++|+.|++++|++..
T Consensus 462 l~~i-p~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 462 IMSI-PKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 511 (562)
T ss_dssp CCCC-CTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCC
T ss_pred Cccc-ChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCC
Confidence 9864 4445589999999999999997544458899999999999999874
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=4e-30 Score=238.14 Aligned_cols=317 Identities=17% Similarity=0.109 Sum_probs=263.7
Q ss_pred cCCCccEEEcccCCCChHHhHhccCCCCCCeEeccCCcccChhHHHhhcCCCCCCEEeCCCCccccHHHHHHHhCCCCCc
Q 013171 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134 (448)
Q Consensus 55 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 134 (448)
..+++++++++++.++......+..+++|++|++++| .+....+..|..+++|++|++++|.. ....+..+.++++|+
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAI-RYLPPHVFQNVPLLT 120 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCC
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCC-cccccChhhccCCCCcCEEECCCCCC-CcCCHHHhcCCCCCC
Confidence 3579999999999888766667889999999999997 67887778899999999999999984 455567789999999
Q ss_pred EEecCCccccccchhhccCCCCCcEEeccCCCccCccccccCcCCCCccEEEecCCCCChHHHHhccCCCCCCeEecCCC
Q 013171 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214 (448)
Q Consensus 135 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 214 (448)
+|++++|.........+..+++|++|++++| .+....+..+..+++|++|++++|.+... .+..+++|+.++++++
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n 196 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYN 196 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSS
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCC-ccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccc
Confidence 9999998655433344688999999999985 45556667788999999999999988864 3567899999999999
Q ss_pred CCchhHHHHHhcCCCCCEEEccCccCChhhHHhhhcCCCCcEEEccCCCcChhHHHHhhCCCCCcEEeccCCccCcchhh
Q 013171 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294 (448)
Q Consensus 215 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~ 294 (448)
.+.. +...++|+.|++++|.+..... ...++|+.|++++|.+++. ..+..+++|+.|++++|.+....+.
T Consensus 197 ~l~~-----~~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~ 266 (390)
T 3o6n_A 197 LLST-----LAIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYH 266 (390)
T ss_dssp CCSE-----EECCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESG
T ss_pred cccc-----cCCCCcceEEECCCCeeeeccc---cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChh
Confidence 7764 3456789999999999876432 3357999999999998864 4678899999999999999888788
Q ss_pred hhhCCCCCCEeeccCCCCCcchhhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEccCCCCChhhHHHhhCCCCC
Q 013171 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 374 (448)
Q Consensus 295 ~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L 374 (448)
.+..+++|+.|++++|.+... +..+..+++|+.|++++|.+... +..+..+++|+.|++++|.++... +..+++|
T Consensus 267 ~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L 341 (390)
T 3o6n_A 267 PFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLHV-ERNQPQFDRLENLYLDHNSIVTLK---LSTHHTL 341 (390)
T ss_dssp GGTTCSSCCEEECCSSCCCEE-ECSSSCCTTCCEEECCSSCCCCC-GGGHHHHTTCSEEECCSSCCCCCC---CCTTCCC
T ss_pred HccccccCCEEECCCCcCccc-CcccCCCCCCCEEECCCCcceec-CccccccCcCCEEECCCCccceeC---chhhccC
Confidence 899999999999999998774 34456789999999999988764 344667899999999999998753 6788999
Q ss_pred CEEEcCCCCCChHHHHhh
Q 013171 375 THLDLFGARITDSGAAYL 392 (448)
Q Consensus 375 ~~L~l~~~~~~~~~~~~~ 392 (448)
+.|++++|++.......+
T Consensus 342 ~~L~l~~N~~~~~~~~~~ 359 (390)
T 3o6n_A 342 KNLTLSHNDWDCNSLRAL 359 (390)
T ss_dssp SEEECCSSCEEHHHHHHH
T ss_pred CEEEcCCCCccchhHHHH
Confidence 999999999987655444
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=9.8e-30 Score=248.06 Aligned_cols=314 Identities=16% Similarity=0.098 Sum_probs=254.5
Q ss_pred CCCCCCeEeccCCcccChhHHHhhcCCCCCCEEeCCCCccccHHHHHHHhCCCCCcEEecCCccccccchhhccCCCCCc
Q 013171 79 DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158 (448)
Q Consensus 79 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 158 (448)
.+.+++.++++++ .+....+..+..+++|++|++++|.+ ....+..+..+++|++|++++|......+..+..+++|+
T Consensus 49 ~l~~l~~l~l~~~-~l~~lp~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 49 TLNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQI-EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 126 (597)
T ss_dssp GGCCCSEEEESSC-EESEECTHHHHHCCCCSEEECTTSCC-CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cCCCceEEEeeCC-CCCCcCHHHHccCCCCcEEECCCCCC-CCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence 4678999999986 67777777889999999999999974 455566889999999999999876666666788999999
Q ss_pred EEeccCCCccCccccccCcCCCCccEEEecCCCCChHHHHhccCCCCCCeEecCCCCCchhHHHHHhcCCCCCEEEccCc
Q 013171 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238 (448)
Q Consensus 159 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 238 (448)
+|++++| .+...+...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+... .+..+++|+.|++++|
T Consensus 127 ~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n 202 (597)
T 3oja_B 127 VLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYN 202 (597)
T ss_dssp EEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSS
T ss_pred EEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccC
Confidence 9999985 45555555678899999999999999887777888999999999999987764 2567899999999998
Q ss_pred cCChhhHHhhhcCCCCcEEEccCCCcChhHHHHhhCCCCCcEEeccCCccCcchhhhhhCCCCCCEeeccCCCCCcchhh
Q 013171 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 318 (448)
Q Consensus 239 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 318 (448)
.+.. +...++|+.|++++|.+..... ...++|+.|++++|.+.+ +..+..+++|+.|++++|.+....+.
T Consensus 203 ~l~~-----l~~~~~L~~L~ls~n~l~~~~~---~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~ 272 (597)
T 3oja_B 203 LLST-----LAIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYH 272 (597)
T ss_dssp CCSE-----EECCTTCSEEECCSSCCCEEEC---SCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESG
T ss_pred cccc-----ccCCchhheeeccCCccccccc---ccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHH
Confidence 8764 3456689999999988764322 224689999999998865 35677889999999999999887788
Q ss_pred hhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEccCCCCChhhHHHhhCCCCCCEEEcCCCCCChHHHHhhhCCCCC
Q 013171 319 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 398 (448)
Q Consensus 319 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 398 (448)
.+..+++|+.|++++|.+... +..+..+++|+.|++++|.+... +..+..+++|+.|++++|.+.+.. +..+++|
T Consensus 273 ~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N~l~~i-~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L 347 (597)
T 3oja_B 273 PFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLHV-ERNQPQFDRLENLYLDHNSIVTLK---LSTHHTL 347 (597)
T ss_dssp GGTTCSSCCEEECTTSCCCEE-ECSSSCCTTCCEEECCSSCCCCC-GGGHHHHTTCSEEECCSSCCCCCC---CCTTCCC
T ss_pred HhcCccCCCEEECCCCCCCCC-CcccccCCCCcEEECCCCCCCcc-CcccccCCCCCEEECCCCCCCCcC---hhhcCCC
Confidence 888899999999999988774 33445688999999999988854 455677889999999999887652 6678899
Q ss_pred CEEeeCCCCCChhHH
Q 013171 399 RSLEICGGGLTDAGV 413 (448)
Q Consensus 399 ~~L~l~~~~~~~~~~ 413 (448)
+.|++++|++.....
T Consensus 348 ~~L~l~~N~~~~~~~ 362 (597)
T 3oja_B 348 KNLTLSHNDWDCNSL 362 (597)
T ss_dssp SEEECCSSCEEHHHH
T ss_pred CEEEeeCCCCCChhH
Confidence 999999999876543
No 39
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=5.7e-28 Score=236.54 Aligned_cols=394 Identities=17% Similarity=0.130 Sum_probs=290.2
Q ss_pred ccceeecCCCCCCChHHHHHHHhcCCC-ccEEEcccCC-CChHHh-HhccCCCCCCeEeccCCcccChh----HHHhhcC
Q 013171 32 ALQDLCLGQYPGVNDKWMDVIASQGSS-LLSVDLSGSD-VTDSGL-IHLKDCSNLQSLDFNFCIQISDG----GLEHLRG 104 (448)
Q Consensus 32 ~~~~l~~~~~~~~~~~~~~~~~~~~~~-l~~L~l~~~~-~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~----~~~~l~~ 104 (448)
.++.+.+..+ .+.+.....+...+++ +++|+++++. ++.... .....|++|++|+|++| .+.+. ....+..
T Consensus 113 ~L~~L~L~~~-~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~~~~~~l~~~~~~ 190 (592)
T 3ogk_B 113 QLKSVHFRRM-IVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEES-SFSEKDGKWLHELAQH 190 (592)
T ss_dssp TCCEEEEESC-BCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTC-EEECCCSHHHHHHHHH
T ss_pred CCCeEEeecc-EecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccc-cccCcchhHHHHHHhc
Confidence 3788888766 4666655555544445 9999999875 443333 33458999999999998 44333 3344578
Q ss_pred CCCCCEEeCCCCccc---cHHHHHHHhCCCCCcEEecCCccccccchhhccCCCCCcEEeccCCCccC--ccccccCcCC
Q 013171 105 LSNLTSLSFRRNNAI---TAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCIT--DSDMKPLSGL 179 (448)
Q Consensus 105 ~~~L~~L~l~~~~~~---~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~~~~~~ 179 (448)
+++|++|+++++... ....+..+.++++|++|++++|.. ...+..+..+++|++|++.++.... ......+..+
T Consensus 191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~ 269 (592)
T 3ogk_B 191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI-LELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFP 269 (592)
T ss_dssp CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG-GGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCC
T ss_pred CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH-HHHHHHHhhhhHHHhhcccccccccchHHHHHHhhcc
Confidence 999999999998753 245566778999999999999754 3456778889999999997533221 2233456788
Q ss_pred CCccEEEecCCCCChHHHHhccCCCCCCeEecCCCCCchhHH-HHHhcCCCCCEEEccCccCChhhHHh-hhcCCCCcEE
Q 013171 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL-DSLSALGSLFYLNLNRCQLSDDGCEK-FSKIGSLKVL 257 (448)
Q Consensus 180 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~L 257 (448)
++|+.+.++..... ..+..+..+++|++|++++|.+..... ..+..+++|+.|+++ +.+.+..... ...+++|+.|
T Consensus 270 ~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L 347 (592)
T 3ogk_B 270 RKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRL 347 (592)
T ss_dssp TTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEE
T ss_pred ccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEE
Confidence 99999999875332 345566788999999999998665433 446789999999998 4444433333 4678999999
Q ss_pred EccC-----------CCcChhHHHH-hhCCCCCcEEeccCCccCcchhhhhhC-CCCCCEeecc----CCCCCcc-----
Q 013171 258 NLGF-----------NEITDECLVH-LKGLTNLESLNLDSCGIGDEGLVNLTG-LCNLKCLELS----DTQVGSS----- 315 (448)
Q Consensus 258 ~l~~-----------~~~~~~~~~~-l~~~~~L~~l~l~~~~~~~~~~~~l~~-~~~L~~L~l~----~~~~~~~----- 315 (448)
++++ +.+++..... ...+++|++|++..+.+++.....+.. +++|+.|++. .+.+++.
T Consensus 348 ~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~ 427 (592)
T 3ogk_B 348 RIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNG 427 (592)
T ss_dssp EEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHH
T ss_pred EeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHH
Confidence 9993 5666554443 456899999999888888777777765 8999999996 4556542
Q ss_pred hhhhhcCCCCCCEEeccCCC--CChHHHHHHh-CCCCCcEeEccCCCCChhhHHH-hhCCCCCCEEEcCCCCCChHHHH-
Q 013171 316 GLRHLSGLTNLESINLSFTG--ISDGSLRKLA-GLSSLKSLNLDARQITDTGLAA-LTSLTGLTHLDLFGARITDSGAA- 390 (448)
Q Consensus 316 ~~~~l~~~~~L~~L~l~~~~--~~~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~- 390 (448)
....+..+++|+.|+++.|. +.+..+..+. .+++|+.|++++|.+++.+... +..+++|+.|++++|.+++....
T Consensus 428 ~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 507 (592)
T 3ogk_B 428 VRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAA 507 (592)
T ss_dssp HHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHH
T ss_pred HHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHH
Confidence 22335678999999998654 7776666665 4899999999999999865554 46899999999999998765444
Q ss_pred hhhCCCCCCEEeeCCCCCChhHHHhhh-cCCCCCeecccCC
Q 013171 391 YLRNFKNLRSLEICGGGLTDAGVKHIK-DLSSLTLLNLSQN 430 (448)
Q Consensus 391 ~~~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~l~l~~~ 430 (448)
....+++|+.|++++|++++.+...++ .+|.+....+..+
T Consensus 508 ~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 508 AVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp HHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred HHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 447899999999999999887666664 5787776666543
No 40
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.96 E-value=1.3e-27 Score=234.07 Aligned_cols=434 Identities=21% Similarity=0.225 Sum_probs=301.3
Q ss_pred CCchHHHHHHHHHHH-hc-----CccCHHHHHHhcCCccceeecCCCCCCChHHHHHHHhcCCCccEEEcccCCCC-hH-
Q 013171 1 MLPRDISQQIFNELV-YS-----RCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVT-DS- 72 (448)
Q Consensus 1 ~~p~~~~~~~~~~l~-~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~-~~- 72 (448)
.+|+|++..+|..|- .+ +.+- ..+........+++.+..+...... .....++++++|+++++... +.
T Consensus 8 ~LPdevL~~If~~L~~~~d~~~~s~vc-k~W~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~L~~L~L~~~~~~~~~~ 83 (594)
T 2p1m_B 8 SFPEEVLEHVFSFIQLDKDRNSVSLVC-KSWYEIERWCRRKVFIGNCYAVSPA---TVIRRFPKVRSVELKGKPHFADFN 83 (594)
T ss_dssp --CHHHHHHHHHTCCCHHHHHHHHTSC-HHHHHHHHHHCCEEEESSTTSSCHH---HHHHHCTTCCEEEEECSCGGGGGT
T ss_pred hCCHHHHHHHHhhcCCchhHHHHHHHH-HHHHHhhhhhceEEeeccccccCHH---HHHhhCCCceEEeccCCCchhhcc
Confidence 489999999997665 21 1110 0001111112445666655444433 34557889999999976421 11
Q ss_pred -------------HhHhccCCCCCCeEeccCCcccChhHHHhhc-CCCCCCEEeCCCCccccHHH-HHHHhCCCCCcEEe
Q 013171 73 -------------GLIHLKDCSNLQSLDFNFCIQISDGGLEHLR-GLSNLTSLSFRRNNAITAQG-MKAFAGLINLVKLD 137 (448)
Q Consensus 73 -------------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~-~~~~~~l~~L~~L~ 137 (448)
+......+++|++|++++| .+.+..+..+. .+++|++|++++|...+... +....++++|++|+
T Consensus 84 l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~ 162 (594)
T 2p1m_B 84 LVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRM-VVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELD 162 (594)
T ss_dssp CSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEE
T ss_pred cccccccchhhHHHHHHHHhCCCCCeEEeeCc-EEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEe
Confidence 1122357899999999997 57777777775 78999999999995455543 34445899999999
Q ss_pred cCCccccccchhh----ccCCCCCcEEeccCCC-ccCcccccc-CcCCCCccEEEecCCCCChHHHHhccCCCCCCeEec
Q 013171 138 LERCTRIHGGLVN----LKGLMKLESLNIKWCN-CITDSDMKP-LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 211 (448)
Q Consensus 138 l~~~~~~~~~~~~----l~~l~~L~~L~l~~~~-~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 211 (448)
+++|......... ...+++|++|++++|. .+....... ...+++|++|+++++......+..+..+++|+.|.+
T Consensus 163 L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l 242 (594)
T 2p1m_B 163 LRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGT 242 (594)
T ss_dssp CTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEEC
T ss_pred CcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEccc
Confidence 9998744333322 2367899999999875 222222222 245799999999988433346667788899999997
Q ss_pred CCCCC------chhHHHHHhcCCCCCEE-EccCccCChhhHHhhhcCCCCcEEEccCCCcChhHHHH-hhCCCCCcEEec
Q 013171 212 EGCPV------TAACLDSLSALGSLFYL-NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH-LKGLTNLESLNL 283 (448)
Q Consensus 212 ~~~~~------~~~~~~~~~~~~~L~~L-~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~l~l 283 (448)
..+.. ....+..+.++++|+.+ .+..... ...+..+..+++|+.|++++|.+++..... +..+++|+.|++
T Consensus 243 ~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l 321 (594)
T 2p1m_B 243 GGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWV 321 (594)
T ss_dssp SBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEE
T ss_pred ccccCccchhhHHHHHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeC
Confidence 65532 11234467889999999 4443221 223334456889999999999887654443 578999999999
Q ss_pred cCCccCcchhhhhh-CCCCCCEeeccC---------CCCCcchhhhhc-CCCCCCEEeccCCCCChHHHHHHh-CCCCCc
Q 013171 284 DSCGIGDEGLVNLT-GLCNLKCLELSD---------TQVGSSGLRHLS-GLTNLESINLSFTGISDGSLRKLA-GLSSLK 351 (448)
Q Consensus 284 ~~~~~~~~~~~~l~-~~~~L~~L~l~~---------~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~ 351 (448)
.++ +.......+. .+++|+.|++.+ +.+++.....+. .+++|+.|.+..+.+++.....+. .+++|+
T Consensus 322 ~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~ 400 (594)
T 2p1m_B 322 LDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMT 400 (594)
T ss_dssp EGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCC
T ss_pred cCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcc
Confidence 988 5444444443 589999999833 345554444443 489999999888899887777776 589999
Q ss_pred EeEcc--C----CCCC----hhhHH-HhhCCCCCCEEEcCCCCCChHHHHhhhC-CCCCCEEeeCCCCCChhHHHhh-hc
Q 013171 352 SLNLD--A----RQIT----DTGLA-ALTSLTGLTHLDLFGARITDSGAAYLRN-FKNLRSLEICGGGLTDAGVKHI-KD 418 (448)
Q Consensus 352 ~L~l~--~----~~l~----~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~l-~~ 418 (448)
.|++. + +.++ +.+.. .+..+++|+.|++++ .+++.....+.. +++|+.|++++|.+++..+..+ ..
T Consensus 401 ~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~ 479 (594)
T 2p1m_B 401 RFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSG 479 (594)
T ss_dssp EEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHH
T ss_pred eeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhc
Confidence 99998 3 5666 32332 356889999999987 788877777755 9999999999999998877777 67
Q ss_pred CCCCCeecccCCCCCCHHHHHHHHh
Q 013171 419 LSSLTLLNLSQNCNLTDKTLELISG 443 (448)
Q Consensus 419 ~~~L~~l~l~~~~~l~~~~~~~l~~ 443 (448)
+++|+.|++++|+ +++.+...+..
T Consensus 480 ~~~L~~L~L~~n~-~~~~~~~~~~~ 503 (594)
T 2p1m_B 480 CDSLRKLEIRDCP-FGDKALLANAS 503 (594)
T ss_dssp CTTCCEEEEESCS-CCHHHHHHTGG
T ss_pred CCCcCEEECcCCC-CcHHHHHHHHH
Confidence 9999999999995 68888775544
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=3.7e-29 Score=243.97 Aligned_cols=316 Identities=17% Similarity=0.107 Sum_probs=264.4
Q ss_pred cCCCccEEEcccCCCChHHhHhccCCCCCCeEeccCCcccChhHHHhhcCCCCCCEEeCCCCccccHHHHHHHhCCCCCc
Q 013171 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134 (448)
Q Consensus 55 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 134 (448)
..++++.++++++.++...+..++.+++|++|++++| .+....+..|..+++|++|++++|.+ ....+..++++++|+
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAI-RYLPPHVFQNVPLLT 126 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCC
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCCcC-CCCCHHHHcCCCCCC
Confidence 3578999999999888777777899999999999997 68888778899999999999999984 556667789999999
Q ss_pred EEecCCccccccchhhccCCCCCcEEeccCCCccCccccccCcCCCCccEEEecCCCCChHHHHhccCCCCCCeEecCCC
Q 013171 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214 (448)
Q Consensus 135 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 214 (448)
+|++++|......+..+..+++|++|++++| .+....+..+..+++|++|++++|.+.+.. +..+++|+.++++++
T Consensus 127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n 202 (597)
T 3oja_B 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYN 202 (597)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSS
T ss_pred EEEeeCCCCCCCCHHHhccCCCCCEEEeeCC-cCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccC
Confidence 9999998655444455789999999999985 456666778899999999999999888643 566889999999999
Q ss_pred CCchhHHHHHhcCCCCCEEEccCccCChhhHHhhhcCCCCcEEEccCCCcChhHHHHhhCCCCCcEEeccCCccCcchhh
Q 013171 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294 (448)
Q Consensus 215 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~ 294 (448)
.+.. +...++|+.|++++|.+...... ..++|+.|++++|.+++. ..+..+++|+.|++++|.+....+.
T Consensus 203 ~l~~-----l~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~ 272 (597)
T 3oja_B 203 LLST-----LAIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYH 272 (597)
T ss_dssp CCSE-----EECCTTCSEEECCSSCCCEEECS---CCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESG
T ss_pred cccc-----ccCCchhheeeccCCcccccccc---cCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHH
Confidence 7764 34567899999999998754322 246899999999998863 5688899999999999999888888
Q ss_pred hhhCCCCCCEeeccCCCCCcchhhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEccCCCCChhhHHHhhCCCCC
Q 013171 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 374 (448)
Q Consensus 295 ~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L 374 (448)
.+..+++|+.|++++|.+... +..+..+++|+.|++++|.+... +..+..+++|+.|++++|.+.... +..+++|
T Consensus 273 ~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N~l~~i-~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L 347 (597)
T 3oja_B 273 PFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLHV-ERNQPQFDRLENLYLDHNSIVTLK---LSTHHTL 347 (597)
T ss_dssp GGTTCSSCCEEECTTSCCCEE-ECSSSCCTTCCEEECCSSCCCCC-GGGHHHHTTCSEEECCSSCCCCCC---CCTTCCC
T ss_pred HhcCccCCCEEECCCCCCCCC-CcccccCCCCcEEECCCCCCCcc-CcccccCCCCCEEECCCCCCCCcC---hhhcCCC
Confidence 899999999999999998874 44556789999999999988854 455677899999999999998753 6678999
Q ss_pred CEEEcCCCCCChHHHHh
Q 013171 375 THLDLFGARITDSGAAY 391 (448)
Q Consensus 375 ~~L~l~~~~~~~~~~~~ 391 (448)
+.|++++|++.......
T Consensus 348 ~~L~l~~N~~~~~~~~~ 364 (597)
T 3oja_B 348 KNLTLSHNDWDCNSLRA 364 (597)
T ss_dssp SEEECCSSCEEHHHHHH
T ss_pred CEEEeeCCCCCChhHHH
Confidence 99999999988754433
No 42
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.96 E-value=3.5e-28 Score=228.27 Aligned_cols=327 Identities=19% Similarity=0.140 Sum_probs=205.6
Q ss_pred cCCCccEEEcccCCCChHHhHhccCCCCCCeEeccCCcccChhHHHhhcCCCCCCEEeCCCCccccHHHHHHHhCCCCCc
Q 013171 55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134 (448)
Q Consensus 55 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 134 (448)
.++++++|+++++.+++. + .++.+++|++|++++| .+... .++.+++|++|++++|.+.. . .++++++|+
T Consensus 40 ~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n-~l~~~---~~~~l~~L~~L~Ls~N~l~~-~---~~~~l~~L~ 109 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSN-NITTL---DLSQNTNLTYLACDSNKLTN-L---DVTPLTKLT 109 (457)
T ss_dssp HHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSS-CCSCC---CCTTCTTCSEEECCSSCCSC-C---CCTTCTTCC
T ss_pred HcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCC-cCCeE---ccccCCCCCEEECcCCCCce-e---ecCCCCcCC
Confidence 356888888888888764 3 6788888899988887 45554 27788888888888887533 2 277888888
Q ss_pred EEecCCccccccchhhccCCCCCcEEeccCCCccCccccccCcCCCCccEEEecCCCCChHHHHhccCCCCCCeEecCCC
Q 013171 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214 (448)
Q Consensus 135 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 214 (448)
+|++++|.... . .+..+++|++|++++|. ++.. .+..+++|++|++++|...+.. .+..+++|+.|+++++
T Consensus 110 ~L~L~~N~l~~-l--~~~~l~~L~~L~l~~N~-l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n 180 (457)
T 3bz5_A 110 YLNCDTNKLTK-L--DVSQNPLLTYLNCARNT-LTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFN 180 (457)
T ss_dssp EEECCSSCCSC-C--CCTTCTTCCEEECTTSC-CSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSS
T ss_pred EEECCCCcCCe-e--cCCCCCcCCEEECCCCc-ccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCC
Confidence 88888875433 2 27778888888888754 3332 3677888888888887433222 4677788888888888
Q ss_pred CCchhHHHHHhcCCCCCEEEccCccCChhhHHhhhcCCCCcEEEccCCCcChhHHHHhhCCCCCcEEeccCCccCcchhh
Q 013171 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294 (448)
Q Consensus 215 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~ 294 (448)
.+... + +..+++|+.|++++|.+... .+..+++|+.|++++|.+++. + +..+++|+.|++++|.+....+
T Consensus 181 ~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l~~N~l~~~~~- 250 (457)
T 3bz5_A 181 KITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI-D--VTPLTQLTYFDCSVNPLTELDV- 250 (457)
T ss_dssp CCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCCC-
T ss_pred cccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccccc-C--ccccCCCCEEEeeCCcCCCcCH-
Confidence 77664 2 67788888888888887764 367778888888888887763 2 6777888888888887766543
Q ss_pred hhhCCCCCCEeecc----------CCCCCcchhhhhcCCCCCCEEeccCCCCChHHHH--------HHhCCCCCcEeEcc
Q 013171 295 NLTGLCNLKCLELS----------DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR--------KLAGLSSLKSLNLD 356 (448)
Q Consensus 295 ~l~~~~~L~~L~l~----------~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~--------~~~~~~~L~~L~l~ 356 (448)
+.+++|+.|.+. +|......+ +..+++|+.|++++|...+..+. .+..+++|+.|+++
T Consensus 251 --~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~ 326 (457)
T 3bz5_A 251 --STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLN 326 (457)
T ss_dssp --TTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECT
T ss_pred --HHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECC
Confidence 334445444444 333222211 34556777777776643322111 02233444444444
Q ss_pred CCCCChhhHHHhhCCCCCCEEEcCCCCCChHHHHhhhCCCCCCEEeeCCCCCChhHHHhhhcCCCCCeecccCC
Q 013171 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430 (448)
Q Consensus 357 ~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~ 430 (448)
+|.+++. .+..+++|+.|++++|++++ ++.|..|.+.+|.+.+. ..+..|..+++++|
T Consensus 327 ~N~l~~l---~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N 384 (457)
T 3bz5_A 327 NTELTEL---DVSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNN 384 (457)
T ss_dssp TCCCSCC---CCTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTT
T ss_pred CCccccc---ccccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccC
Confidence 4444442 13444444444444444433 12333333333333322 23455666777766
No 43
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.96 E-value=6.9e-28 Score=226.30 Aligned_cols=315 Identities=21% Similarity=0.150 Sum_probs=229.6
Q ss_pred HHhHhccCCCCCCeEeccCCcccChhHHHhhcCCCCCCEEeCCCCccccHHHHHHHhCCCCCcEEecCCccccccchhhc
Q 013171 72 SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNL 151 (448)
Q Consensus 72 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l 151 (448)
..+..++++++|++|++++| .+.+. + .+..+++|++|++++|.+.. . + +..+++|++|++++|..... .+
T Consensus 33 ~~~~~~~~l~~L~~L~Ls~n-~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~-~--~~~l~~L~~L~Ls~N~l~~~---~~ 102 (457)
T 3bz5_A 33 TDTISEEQLATLTSLDCHNS-SITDM-T-GIEKLTGLTKLICTSNNITT-L-D--LSQNTNLTYLACDSNKLTNL---DV 102 (457)
T ss_dssp TSEEEHHHHTTCCEEECCSS-CCCCC-T-TGGGCTTCSEEECCSSCCSC-C-C--CTTCTTCSEEECCSSCCSCC---CC
T ss_pred ccccChhHcCCCCEEEccCC-CcccC-h-hhcccCCCCEEEccCCcCCe-E-c--cccCCCCCEEECcCCCCcee---ec
Confidence 33446778999999999997 66654 2 68899999999999998533 2 2 88999999999999864442 38
Q ss_pred cCCCCCcEEeccCCCccCccccccCcCCCCccEEEecCCCCChHHHHhccCCCCCCeEecCCCCCchhHHHHHhcCCCCC
Q 013171 152 KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231 (448)
Q Consensus 152 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 231 (448)
..+++|++|++++|. ++.. .+..+++|++|++++|.+++. .+..+++|+.|++++|...... .+..+++|+
T Consensus 103 ~~l~~L~~L~L~~N~-l~~l---~~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~ 173 (457)
T 3bz5_A 103 TPLTKLTYLNCDTNK-LTKL---DVSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLT 173 (457)
T ss_dssp TTCTTCCEEECCSSC-CSCC---CCTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCC
T ss_pred CCCCcCCEEECCCCc-CCee---cCCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCC
Confidence 889999999999864 4433 278899999999999998864 3788999999999998544332 467889999
Q ss_pred EEEccCccCChhhHHhhhcCCCCcEEEccCCCcChhHHHHhhCCCCCcEEeccCCccCcchhhhhhCCCCCCEeeccCCC
Q 013171 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 311 (448)
Q Consensus 232 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 311 (448)
.|++++|.+.... +..+++|+.|++++|.+++. .+..+++|+.|++++|.+.... +..+++|+.|++++|.
T Consensus 174 ~L~ls~n~l~~l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip---~~~l~~L~~L~l~~N~ 244 (457)
T 3bz5_A 174 TLDCSFNKITELD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNP 244 (457)
T ss_dssp EEECCSSCCCCCC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSC
T ss_pred EEECCCCccceec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccccC---ccccCCCCEEEeeCCc
Confidence 9999999988742 77889999999999988865 3788899999999999987642 6788999999999999
Q ss_pred CCcchhhhhcCCCCCCEEecc----------CCCCChHHHHHHhCCCCCcEeEccCCCCChhhHH--------HhhCCCC
Q 013171 312 VGSSGLRHLSGLTNLESINLS----------FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA--------ALTSLTG 373 (448)
Q Consensus 312 ~~~~~~~~l~~~~~L~~L~l~----------~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~--------~l~~~~~ 373 (448)
+....+ ..+++|+.|+++ +|......+ +..+++|+.|++++|...+..+. .+..+++
T Consensus 245 l~~~~~---~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~ 319 (457)
T 3bz5_A 245 LTELDV---STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPK 319 (457)
T ss_dssp CSCCCC---TTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTT
T ss_pred CCCcCH---HHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhccc
Confidence 887543 344555555544 443322221 34567777777777754332111 1344566
Q ss_pred CCEEEcCCCCCChHHHHhhhCCCCCCEEeeCCCCCChhHHHhhhcCCCCCeecccCC
Q 013171 374 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430 (448)
Q Consensus 374 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~ 430 (448)
|+.|++++|++++. .+..+++|+.|++++|++++ ++.|+.+++++|
T Consensus 320 L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n 365 (457)
T 3bz5_A 320 LVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNN 365 (457)
T ss_dssp CCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGT
T ss_pred CCEEECCCCccccc---ccccCCcCcEEECCCCCCCC--------ccccccccccCC
Confidence 66666666666653 25666666777766666654 244555555544
No 44
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=3.9e-28 Score=239.95 Aligned_cols=371 Identities=20% Similarity=0.172 Sum_probs=256.0
Q ss_pred EEEcccCCCChHHhHhccCCCCCCeEeccCCcccChhHHHhhcCCCCCCEEeCCCCccccHHHHHHHhCCCCCcEEecCC
Q 013171 61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140 (448)
Q Consensus 61 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 140 (448)
+.+-++.+++. +|..+ .+++++|+|++| .++...+..|.++++|++|++++|.+ ....+.+|.++++|++|++++
T Consensus 35 ~~~c~~~~l~~-vP~~l--p~~~~~LdLs~N-~i~~l~~~~f~~l~~L~~L~Ls~N~i-~~i~~~~f~~L~~L~~L~Ls~ 109 (635)
T 4g8a_A 35 TYQCMELNFYK-IPDNL--PFSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEI-QTIEDGAYQSLSHLSTLILTG 109 (635)
T ss_dssp EEECTTSCCSS-CCSSS--CTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCCC-CEECTTTTTTCTTCCEEECTT
T ss_pred EEECCCCCcCc-cCCCC--CcCCCEEEeeCC-CCCCCCHHHHhCCCCCCEEECCCCcC-CCcChhHhcCCCCCCEEEccC
Confidence 34444445552 33322 248999999997 78888888999999999999999974 455567899999999999999
Q ss_pred ccccccchhhccCCCCCcEEeccCCCccCccccccCcCCCCccEEEecCCCCChH-HHHhccCCCCCCeEecCCCCCchh
Q 013171 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS-GIAYLKGLQKLTLLNLEGCPVTAA 219 (448)
Q Consensus 141 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~ 219 (448)
|......+..|..+++|++|++++| .++......++.+++|++|++++|.+... .+..+..+++|++|++++|.+...
T Consensus 110 N~l~~l~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 188 (635)
T 4g8a_A 110 NPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188 (635)
T ss_dssp CCCCEECGGGGTTCTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred CcCCCCCHHHhcCCCCCCEEECCCC-cCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccc
Confidence 8755555567899999999999995 45556666789999999999999988653 356678899999999999987654
Q ss_pred HHHHHhcCCC----CCEEEccCccCCh-----------------------h-hHHhh-----------------------
Q 013171 220 CLDSLSALGS----LFYLNLNRCQLSD-----------------------D-GCEKF----------------------- 248 (448)
Q Consensus 220 ~~~~~~~~~~----L~~L~l~~~~~~~-----------------------~-~~~~l----------------------- 248 (448)
.+..+..+.+ ...++++.+.+.. . ....+
T Consensus 189 ~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~ 268 (635)
T 4g8a_A 189 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 268 (635)
T ss_dssp CGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCS
T ss_pred ccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccc
Confidence 3333332211 1123332222110 0 00011
Q ss_pred --------------------------------------------------------hcCCCCcEEEccCCCcChhHH---
Q 013171 249 --------------------------------------------------------SKIGSLKVLNLGFNEITDECL--- 269 (448)
Q Consensus 249 --------------------------------------------------------~~~~~L~~L~l~~~~~~~~~~--- 269 (448)
.....++.|++.++.+.....
T Consensus 269 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 348 (635)
T 4g8a_A 269 KFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKL 348 (635)
T ss_dssp CCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBC
T ss_pred cccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccc
Confidence 111233444443332211000
Q ss_pred ----------------HHhhCCCCCcEEeccCCccCcc--hhhhhhCCCCCCEeeccCC---------------------
Q 013171 270 ----------------VHLKGLTNLESLNLDSCGIGDE--GLVNLTGLCNLKCLELSDT--------------------- 310 (448)
Q Consensus 270 ----------------~~l~~~~~L~~l~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~--------------------- 310 (448)
.....+++|+.++++.+.+... .+..+....+|+.+++..+
T Consensus 349 ~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~ 428 (635)
T 4g8a_A 349 KSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQ 428 (635)
T ss_dssp TTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECT
T ss_pred hhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhh
Confidence 0012356788888877765432 1222334445555544443
Q ss_pred --CCCcc-hhhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEccCCCCCh-hhHHHhhCCCCCCEEEcCCCCCCh
Q 013171 311 --QVGSS-GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD-TGLAALTSLTGLTHLDLFGARITD 386 (448)
Q Consensus 311 --~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~l~~~~~L~~L~l~~~~~~~ 386 (448)
..... ....+..+++++.++++.|.+....+..+..+++++.|++++|.... ..+..+..+++|+.|++++|++++
T Consensus 429 ~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~ 508 (635)
T 4g8a_A 429 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 508 (635)
T ss_dssp TSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE
T ss_pred hccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCC
Confidence 22211 12334567788888888887776666777788999999999986543 345667889999999999999999
Q ss_pred HHHHhhhCCCCCCEEeeCCCCCChhHHHhhhcCCCCCeecccCCCCCCHHHH
Q 013171 387 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 438 (448)
Q Consensus 387 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~l~~~~~ 438 (448)
..+..+.++++|++|++++|++++..+..+..+++|+.|++++| .++....
T Consensus 509 l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~ 559 (635)
T 4g8a_A 509 LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKK 559 (635)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTS-CCCBCCS
T ss_pred cChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCC-cCCCCCH
Confidence 88889999999999999999999988888999999999999999 6665433
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.95 E-value=2.2e-27 Score=214.60 Aligned_cols=288 Identities=17% Similarity=0.173 Sum_probs=166.5
Q ss_pred CCCEEeCCCCccccHHHHHHHhCCCCCcEEecCCccccccchhhccCCCCCcEEeccCCCccCccccccCcCCCCccEEE
Q 013171 107 NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186 (448)
Q Consensus 107 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 186 (448)
++++++++++... ..|..+ .++|++|++++|......+..+..+++|++|++++| .++...+..+..+++|++|+
T Consensus 32 ~l~~l~~~~~~l~--~lp~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 32 HLRVVQCSDLGLE--KVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp ETTEEECTTSCCC--SCCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEE
T ss_pred CCeEEEecCCCcc--ccCccC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCC-cCCeeCHHHhcCCCCCCEEE
Confidence 5666666665431 112111 245556666555433333334555555555555542 23333344445555555555
Q ss_pred ecCCCCChHHHHhccCCCCCCeEecCCCCCchhHHHHHhcCCCCCEEEccCccCChhhHHhhhcCCCCcEEEccCCCcCh
Q 013171 187 ISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD 266 (448)
Q Consensus 187 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 266 (448)
+++|.+. .. +.. ..++|+.|++++|.+....+..+..+++|+.|++++|.+..
T Consensus 107 Ls~n~l~------------------------~l-~~~--~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 159 (330)
T 1xku_A 107 LSKNQLK------------------------EL-PEK--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS 159 (330)
T ss_dssp CCSSCCS------------------------BC-CSS--CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG
T ss_pred CCCCcCC------------------------cc-Chh--hcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCc
Confidence 5555443 21 111 11455555555555554444445555555555555555432
Q ss_pred --hHHHHhhCCCCCcEEeccCCccCcchhhhhhCCCCCCEeeccCCCCCcchhhhhcCCCCCCEEeccCCCCChHHHHHH
Q 013171 267 --ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344 (448)
Q Consensus 267 --~~~~~l~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 344 (448)
..+..+..+++|+.|+++++.+..... .+ .++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+..+
T Consensus 160 ~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 236 (330)
T 1xku_A 160 SGIENGAFQGMKKLSYIRIADTNITTIPQ-GL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL 236 (330)
T ss_dssp GGBCTTGGGGCTTCCEEECCSSCCCSCCS-SC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTG
T ss_pred cCcChhhccCCCCcCEEECCCCccccCCc-cc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhc
Confidence 223345556666666666665543221 11 2577777777777766666667777777777777777776655566
Q ss_pred hCCCCCcEeEccCCCCChhhHHHhhCCCCCCEEEcCCCCCChHHHHhhhC------CCCCCEEeeCCCCCCh--hHHHhh
Q 013171 345 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN------FKNLRSLEICGGGLTD--AGVKHI 416 (448)
Q Consensus 345 ~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~------~~~L~~L~l~~~~~~~--~~~~~l 416 (448)
..+++|+.|++++|.++.. +..+..+++|+.|++++|++++..+..+.. .+.++.+++.+|.+.. ..+..+
T Consensus 237 ~~l~~L~~L~L~~N~l~~l-p~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f 315 (330)
T 1xku_A 237 ANTPHLRELHLNNNKLVKV-PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTF 315 (330)
T ss_dssp GGSTTCCEEECCSSCCSSC-CTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGG
T ss_pred cCCCCCCEEECCCCcCccC-ChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCcccc
Confidence 7777888888888777743 445667788888888888877765555532 3778888888888763 445677
Q ss_pred hcCCCCCeecccCC
Q 013171 417 KDLSSLTLLNLSQN 430 (448)
Q Consensus 417 ~~~~~L~~l~l~~~ 430 (448)
..+++++.+++++|
T Consensus 316 ~~~~~l~~l~L~~N 329 (330)
T 1xku_A 316 RCVYVRAAVQLGNY 329 (330)
T ss_dssp TTCCCGGGEEC---
T ss_pred ccccceeEEEeccc
Confidence 77888888888887
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.95 E-value=1.1e-27 Score=216.66 Aligned_cols=268 Identities=17% Similarity=0.191 Sum_probs=190.3
Q ss_pred CCCcEEeccCCCccCccccccCcCCCCccEEEecCCCCChHHHHhccCCCCCCeEecCCCCCchhHHHHHhcCCCCCEEE
Q 013171 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234 (448)
Q Consensus 155 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 234 (448)
+++++|+++++ .+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+... +..+ .++|++|+
T Consensus 54 ~~l~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~~~--~~~L~~L~ 129 (332)
T 2ft3_A 54 PDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEI-PPNL--PSSLVELR 129 (332)
T ss_dssp TTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSC-CSSC--CTTCCEEE
T ss_pred CCCeEEECCCC-cCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCcc-Cccc--cccCCEEE
Confidence 45566666553 23334444566666666666666666655555666666666676666655432 1111 26778888
Q ss_pred ccCccCChhhHHhhhcCCCCcEEEccCCCcCh--hHHHHhhCCCCCcEEeccCCccCcchhhhhhCCCCCCEeeccCCCC
Q 013171 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD--ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 312 (448)
Q Consensus 235 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 312 (448)
+++|.+....+..+..+++|+.|++++|.++. ..+..+..+ +|+.++++++.+..... .+ .++|+.|++++|.+
T Consensus 130 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~-~~--~~~L~~L~l~~n~i 205 (332)
T 2ft3_A 130 IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPK-DL--PETLNELHLDHNKI 205 (332)
T ss_dssp CCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCS-SS--CSSCSCCBCCSSCC
T ss_pred CCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCc-cc--cCCCCEEECCCCcC
Confidence 88777776555567778888888888877653 233445555 78888888887765322 22 26889999999988
Q ss_pred CcchhhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEccCCCCChhhHHHhhCCCCCCEEEcCCCCCChHHHHhh
Q 013171 313 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392 (448)
Q Consensus 313 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 392 (448)
....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.++.. +..+..+++|+.|++++|++++..+..+
T Consensus 206 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-p~~l~~l~~L~~L~l~~N~l~~~~~~~~ 284 (332)
T 2ft3_A 206 QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRV-PAGLPDLKLLQVVYLHTNNITKVGVNDF 284 (332)
T ss_dssp CCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBC-CTTGGGCTTCCEEECCSSCCCBCCTTSS
T ss_pred CccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeec-ChhhhcCccCCEEECCCCCCCccChhHc
Confidence 877777788889999999999988877666788889999999999988854 4557888999999999999988766666
Q ss_pred hC------CCCCCEEeeCCCCCC--hhHHHhhhcCCCCCeecccCCC
Q 013171 393 RN------FKNLRSLEICGGGLT--DAGVKHIKDLSSLTLLNLSQNC 431 (448)
Q Consensus 393 ~~------~~~L~~L~l~~~~~~--~~~~~~l~~~~~L~~l~l~~~~ 431 (448)
.. .+.|+.|++.+|++. +..+.++..+++|+.+++++|+
T Consensus 285 ~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 285 CPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 43 467899999999887 5667788889999999999885
No 47
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.95 E-value=6.4e-29 Score=222.24 Aligned_cols=252 Identities=17% Similarity=0.185 Sum_probs=206.0
Q ss_pred CCccEEEecCCCCCh--HHHHhccCCCCCCeEecCC-CCCchhHHHHHhcCCCCCEEEccCccCChhhHHhhhcCCCCcE
Q 013171 180 TNLKSLQISCSKVTD--SGIAYLKGLQKLTLLNLEG-CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 256 (448)
Q Consensus 180 ~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 256 (448)
.+++.|+++++.+.+ ..+..+..+++|++|++++ +.+....+..+..+++|++|++++|.+....+..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 567888888887776 5666778888888888884 6666555667788888888888888887667777888888888
Q ss_pred EEccCCCcChhHHHHhhCCCCCcEEeccCCccCcchhhhhhCCC-CCCEeeccCCCCCcchhhhhcCCCCCCEEeccCCC
Q 013171 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC-NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 335 (448)
Q Consensus 257 L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 335 (448)
|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..++ .|+.|++++|.+....+..+..++ |+.|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 88888887766667778888899999988888766677777777 889999998888766677777766 9999999998
Q ss_pred CChHHHHHHhCCCCCcEeEccCCCCChhhHHHhhCCCCCCEEEcCCCCCChHHHHhhhCCCCCCEEeeCCCCCChhHHHh
Q 013171 336 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 415 (448)
Q Consensus 336 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 415 (448)
+.+..+..+..+++|+.|++++|.++...+ .+..+++|++|++++|.+++..+..+..+++|+.|++++|++++.+|..
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecC-cccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 877677778888999999999998876533 3678899999999999998778888999999999999999998776665
Q ss_pred hhcCCCCCeecccCCCCCC
Q 013171 416 IKDLSSLTLLNLSQNCNLT 434 (448)
Q Consensus 416 l~~~~~L~~l~l~~~~~l~ 434 (448)
..+++|+.+++.+|+.+.
T Consensus 288 -~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 288 -GNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp -TTGGGSCGGGTCSSSEEE
T ss_pred -ccccccChHHhcCCCCcc
Confidence 788999999999997554
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.95 E-value=5.1e-27 Score=212.18 Aligned_cols=289 Identities=17% Similarity=0.187 Sum_probs=175.9
Q ss_pred CCCeEeccCCcccChhHHHhhcCCCCCCEEeCCCCccccHHHHHHHhCCCCCcEEecCCccccccchhhccCCCCCcEEe
Q 013171 82 NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161 (448)
Q Consensus 82 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 161 (448)
+++.++++++ .+... +..+ .++|++|++++|.+ +...+..+.++++|++|++++|......+..+..+++|++|+
T Consensus 32 ~l~~l~~~~~-~l~~l-p~~~--~~~l~~L~L~~n~i-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 32 HLRVVQCSDL-GLEKV-PKDL--PPDTALLDLQNNKI-TEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp ETTEEECTTS-CCCSC-CCSC--CTTCCEEECCSSCC-CCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCeEEEecCC-Ccccc-CccC--CCCCeEEECCCCcC-CEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence 7999999875 44443 2222 36899999999985 455556789999999999999876666678899999999999
Q ss_pred ccCCCccCccccccCcCCCCccEEEecCCCCChHHHHhccCCCCCCeEecCCCCCch--hHHHHHhcCCCCCEEEccCcc
Q 013171 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA--ACLDSLSALGSLFYLNLNRCQ 239 (448)
Q Consensus 162 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~ 239 (448)
++++. ++.. +..+ .++|++|++++|.+....+..+..+++|+.|+++++.+.. ..+..+..+++|+.|++++|.
T Consensus 107 Ls~n~-l~~l-~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~ 182 (330)
T 1xku_A 107 LSKNQ-LKEL-PEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN 182 (330)
T ss_dssp CCSSC-CSBC-CSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred CCCCc-CCcc-Chhh--cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc
Confidence 99854 4322 2222 2678888888887776666667777777777777776542 223445566666666666665
Q ss_pred CChhhHHhhhcCCCCcEEEccCCCcChhHHHHhhCCCCCcEEeccCCccCcchhhhhhCCCCCCEeeccCCCCCcchhhh
Q 013171 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 319 (448)
Q Consensus 240 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 319 (448)
+.... ..+ .++|+.|++++ |.+....+..+..+++|+.|++++|.+....+..
T Consensus 183 l~~l~-~~~--~~~L~~L~l~~------------------------n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 235 (330)
T 1xku_A 183 ITTIP-QGL--PPSLTELHLDG------------------------NKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS 235 (330)
T ss_dssp CCSCC-SSC--CTTCSEEECTT------------------------SCCCEECTGGGTTCTTCCEEECCSSCCCEECTTT
T ss_pred cccCC-ccc--cccCCEEECCC------------------------CcCCccCHHHhcCCCCCCEEECCCCcCceeChhh
Confidence 54321 111 13444455444 4444443444444455555555555544443334
Q ss_pred hcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEccCCCCChhhHHHhh------CCCCCCEEEcCCCCCCh--HHHHh
Q 013171 320 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT------SLTGLTHLDLFGARITD--SGAAY 391 (448)
Q Consensus 320 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~------~~~~L~~L~l~~~~~~~--~~~~~ 391 (448)
+..+++|+.|++++|.+.. .+..+..+++|+.|++++|.++......+. ..+.++.+++.+|++.. ..+..
T Consensus 236 ~~~l~~L~~L~L~~N~l~~-lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~ 314 (330)
T 1xku_A 236 LANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPST 314 (330)
T ss_dssp GGGSTTCCEEECCSSCCSS-CCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGG
T ss_pred ccCCCCCCEEECCCCcCcc-CChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccc
Confidence 4445555555555554442 223344555555555555555544333332 23567777777777653 34556
Q ss_pred hhCCCCCCEEeeCCCC
Q 013171 392 LRNFKNLRSLEICGGG 407 (448)
Q Consensus 392 ~~~~~~L~~L~l~~~~ 407 (448)
+..++.++.+++++|+
T Consensus 315 f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 315 FRCVYVRAAVQLGNYK 330 (330)
T ss_dssp GTTCCCGGGEEC----
T ss_pred cccccceeEEEecccC
Confidence 6777778888777763
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.94 E-value=2.6e-27 Score=214.17 Aligned_cols=288 Identities=19% Similarity=0.201 Sum_probs=174.0
Q ss_pred CCCeEeccCCcccChhHHHhhcCCCCCCEEeCCCCccccHHHHHHHhCCCCCcEEecCCccccccchhhccCCCCCcEEe
Q 013171 82 NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161 (448)
Q Consensus 82 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 161 (448)
+++.++++++ .+... +..+ .++|++|++++|.+ ....+.++.++++|++|++++|......+..+..+++|++|+
T Consensus 34 ~l~~l~~~~~-~l~~i-p~~~--~~~l~~L~l~~n~i-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 34 HLRVVQCSDL-GLKAV-PKEI--SPDTTLLDLQNNDI-SELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp ETTEEECCSS-CCSSC-CSCC--CTTCCEEECCSSCC-CEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred cCCEEECCCC-Ccccc-CCCC--CCCCeEEECCCCcC-CccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence 5777777765 34332 2222 25677777777763 333345566677777777776654444455566666666666
Q ss_pred ccCCCccCccccccCcCCCCccEEEecCCCCChHHHHhccCCCCCCeEecCCCCCchhHHHHHhcCCCCCEEEccCccCC
Q 013171 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241 (448)
Q Consensus 162 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 241 (448)
++++. +... +..+. ++|++|++++|.+.......+.. +++|+.|++++|.+.
T Consensus 109 L~~n~-l~~l-~~~~~--~~L~~L~l~~n~i~~~~~~~~~~------------------------l~~L~~L~l~~n~l~ 160 (332)
T 2ft3_A 109 ISKNH-LVEI-PPNLP--SSLVELRIHDNRIRKVPKGVFSG------------------------LRNMNCIEMGGNPLE 160 (332)
T ss_dssp CCSSC-CCSC-CSSCC--TTCCEEECCSSCCCCCCSGGGSS------------------------CSSCCEEECCSCCCB
T ss_pred CCCCc-CCcc-Ccccc--ccCCEEECCCCccCccCHhHhCC------------------------CccCCEEECCCCccc
Confidence 66532 2211 11111 45555555555554433333444 444555555444443
Q ss_pred h--hhHHhhhcCCCCcEEEccCCCcChhHHHHhhCCCCCcEEeccCCccCcchhhhhhCCCCCCEeeccCCCCCcchhhh
Q 013171 242 D--DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 319 (448)
Q Consensus 242 ~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 319 (448)
. ..+..+..+ +|+.|++++|.++... ..+ .++|+.|+++++.+....+..+..+++|+.|++++|.+....+..
T Consensus 161 ~~~~~~~~~~~l-~L~~L~l~~n~l~~l~-~~~--~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~ 236 (332)
T 2ft3_A 161 NSGFEPGAFDGL-KLNYLRISEAKLTGIP-KDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGS 236 (332)
T ss_dssp GGGSCTTSSCSC-CCSCCBCCSSBCSSCC-SSS--CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTG
T ss_pred cCCCCcccccCC-ccCEEECcCCCCCccC-ccc--cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhH
Confidence 2 122333334 5666666665554321 111 256777777777776666666777778888888888777766666
Q ss_pred hcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEccCCCCChhhHHHhhC------CCCCCEEEcCCCCCC--hHHHHh
Q 013171 320 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS------LTGLTHLDLFGARIT--DSGAAY 391 (448)
Q Consensus 320 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~------~~~L~~L~l~~~~~~--~~~~~~ 391 (448)
+..+++|+.|++++|.+.. .+..+..+++|+.|++++|.++......+.. .+.|+.|++.+|++. +..+..
T Consensus 237 ~~~l~~L~~L~L~~N~l~~-lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~ 315 (332)
T 2ft3_A 237 LSFLPTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPAT 315 (332)
T ss_dssp GGGCTTCCEEECCSSCCCB-CCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGG
T ss_pred hhCCCCCCEEECCCCcCee-cChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCccc
Confidence 7777888888888887764 3345677888888888888887765554432 467889999998877 555677
Q ss_pred hhCCCCCCEEeeCCCC
Q 013171 392 LRNFKNLRSLEICGGG 407 (448)
Q Consensus 392 ~~~~~~L~~L~l~~~~ 407 (448)
+..+++|+.+++++|.
T Consensus 316 ~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 316 FRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GTTBCCSTTEEC----
T ss_pred ccccchhhhhhccccc
Confidence 8888999999988774
No 50
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.94 E-value=2.9e-28 Score=218.01 Aligned_cols=259 Identities=17% Similarity=0.127 Sum_probs=171.4
Q ss_pred HHHHHHhcC---CCccEEEcccCCCCh--HHhHhccCCCCCCeEeccCCcccChhHHHhhcCCCCCCEEeCCCCccccHH
Q 013171 48 WMDVIASQG---SSLLSVDLSGSDVTD--SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQ 122 (448)
Q Consensus 48 ~~~~~~~~~---~~l~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 122 (448)
|.++.+... .++++|+++++.+++ .++..++.+++|++|+++++..+....+..|.++++|++|++++|.+ ...
T Consensus 38 w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l-~~~ 116 (313)
T 1ogq_A 38 WLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNV-SGA 116 (313)
T ss_dssp STTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECC-EEE
T ss_pred CcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCee-CCc
Confidence 666665432 689999999999988 78888999999999999853366666677888999999999998874 445
Q ss_pred HHHHHhCCCCCcEEecCCccccccchhhccCCCCCcEEeccCCCccCccccccCcCCC-CccEEEecCCCCChHHHHhcc
Q 013171 123 GMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT-NLKSLQISCSKVTDSGIAYLK 201 (448)
Q Consensus 123 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~l~ 201 (448)
.+..+.++++|++|++++|......+..+..+++|++|++++| .+++..+..+..++ +|++|++++|.+.+..+..+.
T Consensus 117 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~ 195 (313)
T 1ogq_A 117 IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN-RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA 195 (313)
T ss_dssp CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS-CCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGG
T ss_pred CCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCC-cccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHh
Confidence 5677888889999999887665566677777888888888774 34444555666665 777777777766655555555
Q ss_pred CCCCCCeEecCCCCCchhHHHHHhcCCCCCEEEccCccCChhhHHhhhcCCCCcEEEccCCCcChhHHHHhhCCCCCcEE
Q 013171 202 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281 (448)
Q Consensus 202 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l 281 (448)
.++ |+.|++++|.+....+..+..+++|+.|++++|.+....+. +..+++|+.|++++|.+++..+..+..+++|+.|
T Consensus 196 ~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 273 (313)
T 1ogq_A 196 NLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSL 273 (313)
T ss_dssp GCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEE
T ss_pred CCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEE
Confidence 555 66666666655544455555666666666666665543332 4445555555555555554444445555555555
Q ss_pred eccCCccCcchhhhhhCCCCCCEeeccCCC
Q 013171 282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 311 (448)
Q Consensus 282 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 311 (448)
++++|.+.+..+.. ..+++|+.+++.+|.
T Consensus 274 ~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 274 NVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp ECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred ECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 55555554333322 344455555555543
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.93 E-value=5.7e-26 Score=207.24 Aligned_cols=257 Identities=19% Similarity=0.151 Sum_probs=126.3
Q ss_pred CCcEEeccCCCccCccccccCcCCCCccEEEecCCCCChHHHHhccCCCCCCeEecCCCCCchhHHHHHhcCCCCCEEEc
Q 013171 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235 (448)
Q Consensus 156 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 235 (448)
+|++|+++++ .++......+..+++|++|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|++|++
T Consensus 53 ~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 53 AVKSLDLSNN-RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred cCcEEECCCC-cCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 5555555553 233333334555555555555555555443444445555555555555444433333444555555555
Q ss_pred cCccCChhhHHhhhcCCCCcEEEccCCCcChhHHHHhhCCCCCcEEeccCC-ccCcchhhhhhCCCCCCEeeccCCCCCc
Q 013171 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGS 314 (448)
Q Consensus 236 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 314 (448)
++|.+...... ..+..+++|+.|++++| .+....+..+..+++|+.|++++|.+..
T Consensus 132 ~~n~l~~l~~~-----------------------~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 188 (353)
T 2z80_A 132 LGNPYKTLGET-----------------------SLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS 188 (353)
T ss_dssp TTCCCSSSCSS-----------------------CSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred CCCCCcccCch-----------------------hhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc
Confidence 55544432220 12344445555555544 2333333444455555555555555554
Q ss_pred chhhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEccCCCCChhhHHH---hhCCCCCCEEEcCCCCCChH----
Q 013171 315 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA---LTSLTGLTHLDLFGARITDS---- 387 (448)
Q Consensus 315 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~---l~~~~~L~~L~l~~~~~~~~---- 387 (448)
..+..+..+++|++|++++|.+.......+..+++|+.|++++|.++...... ....+.++.+++.++.+.+.
T Consensus 189 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~ 268 (353)
T 2z80_A 189 YEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ 268 (353)
T ss_dssp ECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHH
T ss_pred cCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhh
Confidence 44445555555555555555554444333444555555555555554432211 12344555566655555542
Q ss_pred HHHhhhCCCCCCEEeeCCCCCChhHHHhhhcCCCCCeecccCCCCCCHH
Q 013171 388 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 436 (448)
Q Consensus 388 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~l~~~ 436 (448)
.+..+..+++|+.|++++|+++......+..+++|+.|++++|+...+.
T Consensus 269 l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 269 VMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp HHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred hHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 2344555666666666666665443333455666666666666444433
No 52
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.93 E-value=1.3e-26 Score=217.50 Aligned_cols=332 Identities=18% Similarity=0.080 Sum_probs=187.3
Q ss_pred hcCCCccEEEcccCCCChHHhHhccCCCC-------------CCeEeccCCcccChhHHHhhcCCCCCCEEeCCCCcccc
Q 013171 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSN-------------LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120 (448)
Q Consensus 54 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~-------------L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 120 (448)
..++++++|+++++.+++..+..++++.+ +++|++++| .+..... -.++|++|++++|....
T Consensus 31 ~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~-~l~~lp~----~~~~L~~L~l~~n~l~~ 105 (454)
T 1jl5_A 31 ENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL-GLSSLPE----LPPHLESLVASCNSLTE 105 (454)
T ss_dssp ---CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS-CCSCCCS----CCTTCSEEECCSSCCSS
T ss_pred hcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCC-ccccCCC----CcCCCCEEEccCCcCCc
Confidence 46778888888888777777777776665 488888886 4444211 23689999998887532
Q ss_pred HHHHHHHhCCCCCcEEecCCccccccchhhccCC-CCCcEEeccCCCccCccccccCcCCCCccEEEecCCCCChHHHHh
Q 013171 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGL-MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY 199 (448)
Q Consensus 121 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 199 (448)
.+ ..+++|++|++++|.... +... ++|++|++++|. ++.. + .+..+++|++|++++|.+++. +
T Consensus 106 --lp---~~~~~L~~L~l~~n~l~~-----l~~~~~~L~~L~L~~n~-l~~l-p-~~~~l~~L~~L~l~~N~l~~l-p-- 169 (454)
T 1jl5_A 106 --LP---ELPQSLKSLLVDNNNLKA-----LSDLPPLLEYLGVSNNQ-LEKL-P-ELQNSSFLKIIDVDNNSLKKL-P-- 169 (454)
T ss_dssp --CC---CCCTTCCEEECCSSCCSC-----CCSCCTTCCEEECCSSC-CSSC-C-CCTTCTTCCEEECCSSCCSCC-C--
T ss_pred --cc---cccCCCcEEECCCCccCc-----ccCCCCCCCEEECcCCC-CCCC-c-ccCCCCCCCEEECCCCcCccc-C--
Confidence 22 234677888887764322 1112 577777777743 3332 2 467777777777777766541 1
Q ss_pred ccCCCCCCeEecCCCCCchhHHHHHhcCCCCCEEEccCccCChhhHHhhhcCCCCcEEEccCCCcChhHHHHhhCCCCCc
Q 013171 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279 (448)
Q Consensus 200 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 279 (448)
...++|++|++++|.+... + .+..+++|+.|++++|.+.... ...++|+.|++++|.+... + .+..+++|+
T Consensus 170 -~~~~~L~~L~L~~n~l~~l-~-~~~~l~~L~~L~l~~N~l~~l~----~~~~~L~~L~l~~n~l~~l-p-~~~~l~~L~ 240 (454)
T 1jl5_A 170 -DLPPSLEFIAAGNNQLEEL-P-ELQNLPFLTAIYADNNSLKKLP----DLPLSLESIVAGNNILEEL-P-ELQNLPFLT 240 (454)
T ss_dssp -CCCTTCCEEECCSSCCSSC-C-CCTTCTTCCEEECCSSCCSSCC----CCCTTCCEEECCSSCCSSC-C-CCTTCTTCC
T ss_pred -CCcccccEEECcCCcCCcC-c-cccCCCCCCEEECCCCcCCcCC----CCcCcccEEECcCCcCCcc-c-ccCCCCCCC
Confidence 1234677777777766553 2 4566677777777776655311 1124566666666655522 2 255566666
Q ss_pred EEeccCCccCcchhhhhhCCCCCCEeeccCCCCCcchhhh----------------h-cCCCCCCEEeccCCCCChHHHH
Q 013171 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH----------------L-SGLTNLESINLSFTGISDGSLR 342 (448)
Q Consensus 280 ~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~----------------l-~~~~~L~~L~l~~~~~~~~~~~ 342 (448)
.+++++|.+..... .+++|+.|++++|.+.... .. + ...++|+.|++++|.+.+
T Consensus 241 ~L~l~~N~l~~l~~----~~~~L~~L~l~~N~l~~l~-~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~---- 311 (454)
T 1jl5_A 241 TIYADNNLLKTLPD----LPPSLEALNVRDNYLTDLP-ELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRS---- 311 (454)
T ss_dssp EEECCSSCCSSCCS----CCTTCCEEECCSSCCSCCC-CCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSE----
T ss_pred EEECCCCcCCcccc----cccccCEEECCCCcccccC-cccCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCc----
Confidence 66666665543211 1244555555554443311 00 0 011455555555555543
Q ss_pred HHhCC-CCCcEeEccCCCCChhhHHHhhCCCCCCEEEcCCCCCChHHHHhhhCCCCCCEEeeCCCCCCh--hHHHhhhcC
Q 013171 343 KLAGL-SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD--AGVKHIKDL 419 (448)
Q Consensus 343 ~~~~~-~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~~ 419 (448)
+..+ ++|+.|++++|.+++.. ..+++|+.|++++|.++.. +. .+++|++|++++|++++ ..|..+..+
T Consensus 312 -i~~~~~~L~~L~Ls~N~l~~lp----~~~~~L~~L~L~~N~l~~l-p~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L 382 (454)
T 1jl5_A 312 -LCDLPPSLEELNVSNNKLIELP----ALPPRLERLIASFNHLAEV-PE---LPQNLKQLHVEYNPLREFPDIPESVEDL 382 (454)
T ss_dssp -ECCCCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSSCCCCCTTCCEE
T ss_pred -ccCCcCcCCEEECCCCcccccc----ccCCcCCEEECCCCccccc-cc---hhhhccEEECCCCCCCcCCCChHHHHhh
Confidence 1223 47778888777776521 1357888888888887753 33 37889999999988877 556666666
Q ss_pred -------------CCCCeecccCCCCCC
Q 013171 420 -------------SSLTLLNLSQNCNLT 434 (448)
Q Consensus 420 -------------~~L~~l~l~~~~~l~ 434 (448)
++|+.|++++| .++
T Consensus 383 ~~n~~~~~i~~~~~~L~~L~ls~N-~l~ 409 (454)
T 1jl5_A 383 RMNSHLAEVPELPQNLKQLHVETN-PLR 409 (454)
T ss_dssp ECCC------------------------
T ss_pred hhcccccccccccCcCCEEECCCC-cCC
Confidence 78899999888 454
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.92 E-value=9.2e-25 Score=199.23 Aligned_cols=255 Identities=22% Similarity=0.177 Sum_probs=165.5
Q ss_pred CCCccEEEcccCCCChHHhHhccCCCCCCeEeccCCcccChhHHHhhcCCCCCCEEeCCCCccccHHHHHHHhCCCCCcE
Q 013171 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135 (448)
Q Consensus 56 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 135 (448)
.+++++|+++++++++.....+..+++|++|++++| .+....+..|..+++|++|++++|.. +...+..+.++++|++
T Consensus 51 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~ 128 (353)
T 2z80_A 51 TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNYL-SNLSSSWFKPLSSLTF 128 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCC-SSCCHHHHTTCTTCSE
T ss_pred cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCCcC-CcCCHhHhCCCccCCE
Confidence 357888888888887666667788888888888886 67776677788888888888888874 3444556788888888
Q ss_pred EecCCccccccch-hhccCCCCCcEEeccCCCccCccccccCcCCCCccEEEecCCCCChHHHHhccCCCCCCeEecCCC
Q 013171 136 LDLERCTRIHGGL-VNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214 (448)
Q Consensus 136 L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 214 (448)
|++++|....... ..+..+++|++|++++|.......+..+..+++|++|++++|.+.+..+..+..+++|++|+++++
T Consensus 129 L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 208 (353)
T 2z80_A 129 LNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK 208 (353)
T ss_dssp EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred EECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCC
Confidence 8888875443222 357778888888888765566566667777888888888888777666667777788888888877
Q ss_pred CCchhHHHHHhcCCCCCEEEccCccCChhhHHhh---hcCCCCcEEEccCCCcChh----HHHHhhCCCCCcEEeccCCc
Q 013171 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF---SKIGSLKVLNLGFNEITDE----CLVHLKGLTNLESLNLDSCG 287 (448)
Q Consensus 215 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l---~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~l~l~~~~ 287 (448)
.+.......+..+++|+.|++++|.+.......+ ...+.++.+++..+.+.+. .+..+..+++|+.|++++|.
T Consensus 209 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~ 288 (353)
T 2z80_A 209 QHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ 288 (353)
T ss_dssp CSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSC
T ss_pred ccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCC
Confidence 7765544455567788888887777655332221 2234455555555554432 22334444555555555544
Q ss_pred cCcchhhhhhCCCCCCEeeccCCCC
Q 013171 288 IGDEGLVNLTGLCNLKCLELSDTQV 312 (448)
Q Consensus 288 ~~~~~~~~l~~~~~L~~L~l~~~~~ 312 (448)
+.......+..+++|+.|++.+|.+
T Consensus 289 l~~i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 289 LKSVPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCccCHHHHhcCCCCCEEEeeCCCc
Confidence 4433222233444444444444443
No 54
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.92 E-value=3.8e-25 Score=207.84 Aligned_cols=227 Identities=21% Similarity=0.225 Sum_probs=141.4
Q ss_pred CCccEEEecCCCCChHHHHhccCCCCCCeEecCCCCCchhHHHHHhcCCCCCEEEccCccCChhhHHhhhcCCCCcEEEc
Q 013171 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259 (448)
Q Consensus 180 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 259 (448)
++++.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+.......+..+++|+.|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 56777788777777666666777777777777777766655556667777777777777766555555666777777777
Q ss_pred cCCCcChhHHHHhhCCCCCcEEeccCC-ccCcchhhhhhCCCCCCEeeccCCCCCcchhhhhcCCCCCCEEeccCCCCCh
Q 013171 260 GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338 (448)
Q Consensus 260 ~~~~~~~~~~~~l~~~~~L~~l~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 338 (448)
++|.+.......+..+++|+.|+++++ .+.......|..+++|+.|++++|.+.... .+..+++|+.|++++|.+..
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~Ls~N~l~~ 221 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP--NLTPLIKLDELDLSGNHLSA 221 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC--CCTTCSSCCEEECTTSCCCE
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc--ccCCCcccCEEECCCCccCc
Confidence 777666544445666667777777663 333333444556666666666666655422 34555566666666666655
Q ss_pred HHHHHHhCCCCCcEeEccCCCCChhhHHHhhCCCCCCEEEcCCCCCChHHHHhhhCCCCCCEEeeCCCCC
Q 013171 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 408 (448)
Q Consensus 339 ~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 408 (448)
..+..+..+++|+.|++++|.++......+..+++|+.|++++|+++...+..+..+++|+.|++++|++
T Consensus 222 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 222 IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 5455555566666666666666555445555556666666666655555444555556666666655543
No 55
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.92 E-value=9.1e-25 Score=193.10 Aligned_cols=224 Identities=22% Similarity=0.243 Sum_probs=127.6
Q ss_pred cEEEecCCCCChHHHHhccCCCCCCeEecCCCCCchhHHHHHhcCCCCCEEEccCccCChhhHHhhhcCCCCcEEEccCC
Q 013171 183 KSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262 (448)
Q Consensus 183 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 262 (448)
+.++.+++.+.... . .-.+++++|+++++.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|
T Consensus 14 ~~~~c~~~~l~~ip-~--~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQAVP-V--GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSSCC-T--TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcccCC-c--CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 34555555444321 1 12356677777766666554455666666677776666666554555666666666666666
Q ss_pred C-cChhHHHHhhCCCCCcEEeccCCccCcchhhhhhCCCCCCEeeccCCCCCcchhhhhcCCCCCCEEeccCCCCChHHH
Q 013171 263 E-ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 341 (448)
Q Consensus 263 ~-~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 341 (448)
. +....+..+..+++|++|+++++.+....+..+..+++|+.|++++|.+.......+..+++|+.|++++|.+....+
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence 4 444334455556666666666666555444555556666666666665555444445555666666666665555444
Q ss_pred HHHhCCCCCcEeEccCCCCChhhHHHhhCCCCCCEEEcCCCCCChHHHHhhhCCCCCCEEeeCCCCCC
Q 013171 342 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 409 (448)
Q Consensus 342 ~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 409 (448)
..+..+++|+.|++++|.++...+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++.
T Consensus 171 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 44555556666666655555544455555555666666555555544444555555555555555543
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.92 E-value=3.1e-25 Score=209.16 Aligned_cols=227 Identities=21% Similarity=0.214 Sum_probs=140.4
Q ss_pred CCccEEEecCCCCChHHHHhccCCCCCCeEecCCCCCchhHHHHHhcCCCCCEEEccCccCChhhHHhhhcCCCCcEEEc
Q 013171 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259 (448)
Q Consensus 180 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 259 (448)
+++++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 56777888777777666666777777777777777766655556667777777777777766655555666777777777
Q ss_pred cCCCcChhHHHHhhCCCCCcEEeccCC-ccCcchhhhhhCCCCCCEeeccCCCCCcchhhhhcCCCCCCEEeccCCCCCh
Q 013171 260 GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338 (448)
Q Consensus 260 ~~~~~~~~~~~~l~~~~~L~~l~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 338 (448)
++|.+.......+..+++|+.|+++++ .+.......+..+++|+.|++++|.+... ..+..+++|+.|++++|.+.+
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~ 232 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFPE 232 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC--CCCTTCTTCCEEECTTSCCSE
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc--ccccccccccEEECcCCcCcc
Confidence 777666544445666666777766663 33333334455666666666666665542 234455566666666666555
Q ss_pred HHHHHHhCCCCCcEeEccCCCCChhhHHHhhCCCCCCEEEcCCCCCChHHHHhhhCCCCCCEEeeCCCCC
Q 013171 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 408 (448)
Q Consensus 339 ~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 408 (448)
..+..+..+++|+.|++++|.++...+..+..+++|+.|++++|+++...+..+..+++|+.|++++|++
T Consensus 233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence 5555555566666666666655555445555555666666666655554444455555666666655543
No 57
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.92 E-value=6.1e-24 Score=192.70 Aligned_cols=261 Identities=19% Similarity=0.214 Sum_probs=169.8
Q ss_pred CCchHHHHHHHHHHHhcCccCHHHHHHhcCCccceeecCCCCCCChHHHHHHHhcCCCccEEEcccCCCChHHhHhccCC
Q 013171 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDC 80 (448)
Q Consensus 1 ~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~ 80 (448)
++|+|++..+|..|-.+ ++ ..+..++..|...... ...+++++++++.+.+ ..+.++
T Consensus 11 ~LP~eil~~If~~L~~~-----------------d~--~~~~~vc~~W~~~~~~-~~~~~~l~l~~~~~~~---~~~~~~ 67 (336)
T 2ast_B 11 SLPDELLLGIFSCLCLP-----------------EL--LKVSGVCKRWYRLASD-ESLWQTLDLTGKNLHP---DVTGRL 67 (336)
T ss_dssp SSCHHHHHHHHTTSCHH-----------------HH--HHTTSSCHHHHHHHTC-STTSSEEECTTCBCCH---HHHHHH
T ss_pred hCCHHHHHHHHHhCCHH-----------------HH--HHHHHHHHHHHHHhcC-chhheeeccccccCCH---HHHHhh
Confidence 48999999998754211 11 1234568889887764 5679999999988874 345555
Q ss_pred --CCCCeEeccCCcccChhHHHhhcCCCCCCEEeCCCCccccHHHHHHHhCCCCCcEEecCCccccccchhhccCCCCCc
Q 013171 81 --SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158 (448)
Q Consensus 81 --~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 158 (448)
++++.|+++++ .+....+. +..+++|++|++++|.......+..+..+++|++|++++|......+..+..+++|+
T Consensus 68 ~~~~l~~L~l~~n-~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~ 145 (336)
T 2ast_B 68 LSQGVIAFRCPRS-FMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLV 145 (336)
T ss_dssp HHTTCSEEECTTC-EECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCS
T ss_pred hhccceEEEcCCc-cccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCC
Confidence 79999999986 45554333 557899999999999853333777888999999999998865555566677788888
Q ss_pred EEeccCCCccCcc-ccccCcCCCCccEEEecCC-CCChH-HHHhccCCC-CCCeEecCCC--CCc-hhHHHHHhcCCCCC
Q 013171 159 SLNIKWCNCITDS-DMKPLSGLTNLKSLQISCS-KVTDS-GIAYLKGLQ-KLTLLNLEGC--PVT-AACLDSLSALGSLF 231 (448)
Q Consensus 159 ~L~l~~~~~~~~~-~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~l~~~~-~L~~L~l~~~--~~~-~~~~~~~~~~~~L~ 231 (448)
+|++++|..+++. .+..+..+++|++|++++| .+++. .+..+..++ +|++|++++| .+. ...+..+..+++|+
T Consensus 146 ~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~ 225 (336)
T 2ast_B 146 RLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLV 225 (336)
T ss_dssp EEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCS
T ss_pred EEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCC
Confidence 8888876555542 2333556677777777776 66654 344455666 6777776666 333 23344555666666
Q ss_pred EEEccCcc-CChhhHHhhhcCCCCcEEEccCC-CcChhHHHHhhCCCCCcEEeccCC
Q 013171 232 YLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGFN-EITDECLVHLKGLTNLESLNLDSC 286 (448)
Q Consensus 232 ~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~l~l~~~ 286 (448)
.|++++|. +++..+..+..+++|+.|++++| .+.+.....+..+++|+.|++++|
T Consensus 226 ~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 226 HLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp EEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred EEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 66666666 45444555555666666666655 233332233445555555555555
No 58
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.91 E-value=1.6e-25 Score=200.23 Aligned_cols=229 Identities=20% Similarity=0.192 Sum_probs=178.4
Q ss_pred CCccEEEecCCCCChHHHHhccCCCCCCeEecCCCCCchhH--HHHHhcCCCCCEEEccCccCChhhHHhhhcCCCCcEE
Q 013171 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC--LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257 (448)
Q Consensus 180 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 257 (448)
++|++|+++++.+.......+..+++|++|+++++.+.... +..+..+++|++|++++|.+.. .+..+..+++|+.|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE-EEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc-ChhhcCCCCCCCEE
Confidence 68899999999888665556788899999999988776421 3455678899999999988764 33457778899999
Q ss_pred EccCCCcChhHH-HHhhCCCCCcEEeccCCccCcchhhhhhCCCCCCEeeccCCCCCc-chhhhhcCCCCCCEEeccCCC
Q 013171 258 NLGFNEITDECL-VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS-SGLRHLSGLTNLESINLSFTG 335 (448)
Q Consensus 258 ~l~~~~~~~~~~-~~l~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~ 335 (448)
++++|.++.... ..+..+++|+.|+++++.+....+..+..+++|+.|++++|.+.+ ..+..+..+++|+.|++++|.
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 186 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence 998887765433 457778888899988888776666677788888888888887765 345667778888888888888
Q ss_pred CChHHHHHHhCCCCCcEeEccCCCCChhhHHHhhCCCCCCEEEcCCCCCChHHHHhhhCCC-CCCEEeeCCCCCC
Q 013171 336 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK-NLRSLEICGGGLT 409 (448)
Q Consensus 336 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~ 409 (448)
+.+..+..+..+++|+.|++++|.++......+..+++|+.|++++|.+.+..+..+..++ +|+.|++++|++.
T Consensus 187 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence 8876667777888888888888888776555677788888888888888877777777774 8888888888775
No 59
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.91 E-value=6.5e-24 Score=199.12 Aligned_cols=318 Identities=17% Similarity=0.060 Sum_probs=203.7
Q ss_pred CCCccEEEcccCCCChHHhHhccCCCCCCeEeccCCcccChhHHHhhcCC-CCCCEEeCCCCccccHHHHHHHhCCCCCc
Q 013171 56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGL-SNLTSLSFRRNNAITAQGMKAFAGLINLV 134 (448)
Q Consensus 56 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 134 (448)
++++++|+++++.+++ ++. .+++|++|++++| .+.. +... ++|++|++++|... . .+ .++++++|+
T Consensus 90 ~~~L~~L~l~~n~l~~-lp~---~~~~L~~L~l~~n-~l~~-----l~~~~~~L~~L~L~~n~l~-~-lp-~~~~l~~L~ 156 (454)
T 1jl5_A 90 PPHLESLVASCNSLTE-LPE---LPQSLKSLLVDNN-NLKA-----LSDLPPLLEYLGVSNNQLE-K-LP-ELQNSSFLK 156 (454)
T ss_dssp CTTCSEEECCSSCCSS-CCC---CCTTCCEEECCSS-CCSC-----CCSCCTTCCEEECCSSCCS-S-CC-CCTTCTTCC
T ss_pred cCCCCEEEccCCcCCc-ccc---ccCCCcEEECCCC-ccCc-----ccCCCCCCCEEECcCCCCC-C-Cc-ccCCCCCCC
Confidence 4678888888887775 332 3478888888876 4443 2222 58888888888753 2 34 578888888
Q ss_pred EEecCCccccccchhhccCCCCCcEEeccCCCccCccccccCcCCCCccEEEecCCCCChHHHHhccCCCCCCeEecCCC
Q 013171 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214 (448)
Q Consensus 135 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 214 (448)
+|++++|... ..+.. .++|++|++++|. +... ..+..+++|++|++++|.+.+.. ...++|++|++++|
T Consensus 157 ~L~l~~N~l~-~lp~~---~~~L~~L~L~~n~-l~~l--~~~~~l~~L~~L~l~~N~l~~l~----~~~~~L~~L~l~~n 225 (454)
T 1jl5_A 157 IIDVDNNSLK-KLPDL---PPSLEFIAAGNNQ-LEEL--PELQNLPFLTAIYADNNSLKKLP----DLPLSLESIVAGNN 225 (454)
T ss_dssp EEECCSSCCS-CCCCC---CTTCCEEECCSSC-CSSC--CCCTTCTTCCEEECCSSCCSSCC----CCCTTCCEEECCSS
T ss_pred EEECCCCcCc-ccCCC---cccccEEECcCCc-CCcC--ccccCCCCCCEEECCCCcCCcCC----CCcCcccEEECcCC
Confidence 8888887533 22222 3588888888854 4432 25778888899998888776421 12357888898888
Q ss_pred CCchhHHHHHhcCCCCCEEEccCccCChhhHHhhhcCCCCcEEEccCCCcChhHHHHhhCCCCCcEEeccCCccCcchhh
Q 013171 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294 (448)
Q Consensus 215 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~ 294 (448)
.+... + .+..+++|+.|++++|.+.... ..+++|+.|++++|.+++. + ..+++|+.+++++|.+.....
T Consensus 226 ~l~~l-p-~~~~l~~L~~L~l~~N~l~~l~----~~~~~L~~L~l~~N~l~~l-~---~~~~~L~~L~ls~N~l~~l~~- 294 (454)
T 1jl5_A 226 ILEEL-P-ELQNLPFLTTIYADNNLLKTLP----DLPPSLEALNVRDNYLTDL-P---ELPQSLTFLDVSENIFSGLSE- 294 (454)
T ss_dssp CCSSC-C-CCTTCTTCCEEECCSSCCSSCC----SCCTTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSEESC-
T ss_pred cCCcc-c-ccCCCCCCCEEECCCCcCCccc----ccccccCEEECCCCccccc-C---cccCcCCEEECcCCccCcccC-
Confidence 77643 3 3778888999999888876522 1347889999988887652 1 234788999999888765321
Q ss_pred hhhCCCCCCEeeccCCCCCcchhhhhcCC-CCCCEEeccCCCCChHHHHHHhCCCCCcEeEccCCCCChhhHHHhhCCCC
Q 013171 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGL-TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 373 (448)
Q Consensus 295 ~l~~~~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~ 373 (448)
..++|+.|++++|.+... ... ++|+.|++++|.+.+.. ..+++|+.|++++|.++.... .+++
T Consensus 295 ---~~~~L~~L~l~~N~l~~i-----~~~~~~L~~L~Ls~N~l~~lp----~~~~~L~~L~L~~N~l~~lp~----~l~~ 358 (454)
T 1jl5_A 295 ---LPPNLYYLNASSNEIRSL-----CDLPPSLEELNVSNNKLIELP----ALPPRLERLIASFNHLAEVPE----LPQN 358 (454)
T ss_dssp ---CCTTCCEEECCSSCCSEE-----CCCCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC----CCTT
T ss_pred ---cCCcCCEEECcCCcCCcc-----cCCcCcCCEEECCCCcccccc----ccCCcCCEEECCCCccccccc----hhhh
Confidence 136899999999887652 233 58999999999887622 136899999999999886422 4789
Q ss_pred CCEEEcCCCCCCh--HHHHhhhCC-------------CCCCEEeeCCCCCCh--hHHHhhhcCCCCCeecccCC
Q 013171 374 LTHLDLFGARITD--SGAAYLRNF-------------KNLRSLEICGGGLTD--AGVKHIKDLSSLTLLNLSQN 430 (448)
Q Consensus 374 L~~L~l~~~~~~~--~~~~~~~~~-------------~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~l~l~~~ 430 (448)
|+.|++++|++++ ..|..+..+ ++|+.|++++|.+.+ .+| ++++.+.+.+|
T Consensus 359 L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP------~sl~~L~~~~~ 426 (454)
T 1jl5_A 359 LKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIP------ESVEDLRMNSE 426 (454)
T ss_dssp CCEEECCSSCCSSCCCCCTTCCEEECCC----------------------------------------------
T ss_pred ccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccch------hhHhheeCcCc
Confidence 9999999999887 455666555 889999999999886 333 45677777777
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.91 E-value=7.6e-25 Score=193.62 Aligned_cols=250 Identities=20% Similarity=0.195 Sum_probs=175.4
Q ss_pred CCCccEEEecCCCCChHHHHhccCCCCCCeEecCCCCCchhHHHHHhcCCCCCEEEccCcc-CChhhHHhhhcCCCCcEE
Q 013171 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVL 257 (448)
Q Consensus 179 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L 257 (448)
.++|++|+++++.+....+..+..+++|++|+++++.+....+..+..+++|++|++++|. +....+..+..+++|+.|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 3566777777766665555556667777777777776665545566677777777777775 555545666777778888
Q ss_pred EccCCCcChhHHHHhhCCCCCcEEeccCCccCcchhhhhhCCCCCCEeeccCCCCCcchhhhhcCCCCCCEEeccCCCCC
Q 013171 258 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337 (448)
Q Consensus 258 ~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 337 (448)
++++|.+++..+..+..+++|++|+++++.+.......+..+++|+.|++++|.+.......+..+++|+.|++++|.+.
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 190 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccc
Confidence 88777776655556777788888888888777666666777888888888888877766666777888888888888887
Q ss_pred hHHHHHHhCCCCCcEeEccCCCCChhhHHHhhCCCCCCEEEcCCCCCChHHHH-hhhCCCCCCEEeeCCCCCChhHHHhh
Q 013171 338 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA-YLRNFKNLRSLEICGGGLTDAGVKHI 416 (448)
Q Consensus 338 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~l 416 (448)
+..+..+..+++|+.|++++|.+++.....+..+++|+.|++++|++....+. .+ ...++.+....+.+....|..+
T Consensus 191 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~--~~~l~~~~~~~~~~~c~~p~~l 268 (285)
T 1ozn_A 191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPL--WAWLQKFRGSSSEVPCSLPQRL 268 (285)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHH--HHHHHHCCSEECCCBEEESGGG
T ss_pred ccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHH--HHHHHhcccccCccccCCchHh
Confidence 77677777888888888888888877667788888888899888876632211 11 1123333445556655556665
Q ss_pred h--cCCCCCeecccCC
Q 013171 417 K--DLSSLTLLNLSQN 430 (448)
Q Consensus 417 ~--~~~~L~~l~l~~~ 430 (448)
. .+..++..++.+|
T Consensus 269 ~g~~l~~l~~~~l~~C 284 (285)
T 1ozn_A 269 AGRDLKRLAANDLQGC 284 (285)
T ss_dssp TTCBGGGSCGGGSCCC
T ss_pred CCcChhhcCHHHhccC
Confidence 4 3566777777777
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.91 E-value=7.6e-24 Score=199.72 Aligned_cols=228 Identities=25% Similarity=0.251 Sum_probs=168.9
Q ss_pred CCCcEEeccCCCccCccccccCcCCCCccEEEecCCCCChHHHHhccCCCCCCeEecCCCCCchhHHHHHhcCCCCCEEE
Q 013171 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234 (448)
Q Consensus 155 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 234 (448)
+++++|+++++ .+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|+
T Consensus 75 ~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 75 SNTRYLNLMEN-NIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TTCSEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred CCccEEECcCC-cCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence 57888888774 45556666777888888888888877776666777788888888888877765555677778888888
Q ss_pred ccCccCChhhHHhhhcCCCCcEEEccCC-CcChhHHHHhhCCCCCcEEeccCCccCcchhhhhhCCCCCCEeeccCCCCC
Q 013171 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFN-EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 313 (448)
Q Consensus 235 l~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 313 (448)
+++|.+.......+..+++|+.|+++++ .+.......+..+++|+.|++++|.+... +.+..+++|+.|++++|.+.
T Consensus 154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~ 231 (452)
T 3zyi_A 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFP 231 (452)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC--CCCTTCTTCCEEECTTSCCS
T ss_pred CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc--ccccccccccEEECcCCcCc
Confidence 8888877666666777888888888763 34433334567778888888888877643 34667778888888888887
Q ss_pred cchhhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEccCCCCChhhHHHhhCCCCCCEEEcCCCCCC
Q 013171 314 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385 (448)
Q Consensus 314 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~ 385 (448)
...+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.++......+..+++|+.|++++|++.
T Consensus 232 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 232 EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 776777778888888888888877766677777888888888888877665566677788888888877644
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.91 E-value=7.2e-24 Score=199.15 Aligned_cols=228 Identities=25% Similarity=0.261 Sum_probs=170.2
Q ss_pred CCCcEEeccCCCccCccccccCcCCCCccEEEecCCCCChHHHHhccCCCCCCeEecCCCCCchhHHHHHhcCCCCCEEE
Q 013171 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234 (448)
Q Consensus 155 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 234 (448)
++++.|+++++ .+.......+..+++|++|++++|.+....+..+..+++|++|++++|.+.......+..+++|+.|+
T Consensus 64 ~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 64 TNTRLLNLHEN-QIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp TTCSEEECCSC-CCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred CCCcEEEccCC-cCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence 57788888773 45555666777888888888888887776667777888888888888877765555677788888888
Q ss_pred ccCccCChhhHHhhhcCCCCcEEEccCC-CcChhHHHHhhCCCCCcEEeccCCccCcchhhhhhCCCCCCEeeccCCCCC
Q 013171 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFN-EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 313 (448)
Q Consensus 235 l~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 313 (448)
+++|.+.......+..+++|+.|+++++ .+.......+..+++|+.|++++|.+... +.+..+++|+.|++++|.+.
T Consensus 143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~ 220 (440)
T 3zyj_A 143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI--PNLTPLIKLDELDLSGNHLS 220 (440)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC--CCCTTCSSCCEEECTTSCCC
T ss_pred CCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc--cccCCCcccCEEECCCCccC
Confidence 8888877666666777888888888774 34433344567778888888888877643 24667778888888888877
Q ss_pred cchhhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEccCCCCChhhHHHhhCCCCCCEEEcCCCCCC
Q 013171 314 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385 (448)
Q Consensus 314 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~ 385 (448)
...+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.++......+..+++|+.|++++|++.
T Consensus 221 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 221 AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 766777778888888888888887776677777888888888888887766666677788888888877654
No 63
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.90 E-value=4.6e-24 Score=190.70 Aligned_cols=230 Identities=20% Similarity=0.194 Sum_probs=169.0
Q ss_pred CCCcEEeccCCCccCccccccCcCCCCccEEEecCCCCChHH--HHhccCCCCCCeEecCCCCCchhHHHHHhcCCCCCE
Q 013171 155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG--IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232 (448)
Q Consensus 155 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 232 (448)
++|++|+++++. ++......+..+++|++|++++|.+.... +..+..+++|++|+++++.+... +..+..+++|++
T Consensus 28 ~~l~~L~L~~n~-l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l-~~~~~~l~~L~~ 105 (306)
T 2z66_A 28 SSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEH 105 (306)
T ss_dssp TTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEE-EEEEETCTTCCE
T ss_pred CCCCEEECCCCc-cCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccC-hhhcCCCCCCCE
Confidence 578888888744 44444455677888888888888776432 33445678888888888876643 334667888888
Q ss_pred EEccCccCChhhH-HhhhcCCCCcEEEccCCCcChhHHHHhhCCCCCcEEeccCCccCc-chhhhhhCCCCCCEeeccCC
Q 013171 233 LNLNRCQLSDDGC-EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTGLCNLKCLELSDT 310 (448)
Q Consensus 233 L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~ 310 (448)
|++++|.+..... ..+..+++|+.|++++|.+....+..+..+++|+.|+++++.+.. ..+..+..+++|+.|++++|
T Consensus 106 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n 185 (306)
T 2z66_A 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 185 (306)
T ss_dssp EECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred EECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCC
Confidence 8888887765443 456778888888888887766556667778888888888887764 34556777788888888888
Q ss_pred CCCcchhhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEccCCCCChhhHHHhhCCC-CCCEEEcCCCCCCh
Q 013171 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT-GLTHLDLFGARITD 386 (448)
Q Consensus 311 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~-~L~~L~l~~~~~~~ 386 (448)
.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..++ +|+.|++++|++..
T Consensus 186 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 186 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred CcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 88776677777888888888888887776555677788888888888888776666666664 78888888887754
No 64
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.90 E-value=2.3e-22 Score=185.72 Aligned_cols=257 Identities=16% Similarity=0.167 Sum_probs=162.8
Q ss_pred ccCcCCCCccEEEecCCCCChHHHHh----ccCCCCCCeEecCCCCCc---hhHH-------HHHhcCCCCCEEEccCcc
Q 013171 174 KPLSGLTNLKSLQISCSKVTDSGIAY----LKGLQKLTLLNLEGCPVT---AACL-------DSLSALGSLFYLNLNRCQ 239 (448)
Q Consensus 174 ~~~~~~~~L~~L~l~~~~~~~~~~~~----l~~~~~L~~L~l~~~~~~---~~~~-------~~~~~~~~L~~L~l~~~~ 239 (448)
..+..+++|++|++++|.+....+.. +..+++|++|+++++.+. ...+ ..+..+++|++|++++|.
T Consensus 26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 105 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA 105 (386)
T ss_dssp HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred HHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence 34556788999999998888765544 567888999988886332 2222 234677888888888888
Q ss_pred CCh----hhHHhhhcCCCCcEEEccCCCcChhHHHHhh----CC---------CCCcEEeccCCccCcchhh----hhhC
Q 013171 240 LSD----DGCEKFSKIGSLKVLNLGFNEITDECLVHLK----GL---------TNLESLNLDSCGIGDEGLV----NLTG 298 (448)
Q Consensus 240 ~~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~----~~---------~~L~~l~l~~~~~~~~~~~----~l~~ 298 (448)
+.. ..+..+..+++|+.|++++|.+++..+..+. .+ ++|++|++++|.+...... .+..
T Consensus 106 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 185 (386)
T 2ca6_A 106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 185 (386)
T ss_dssp CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHh
Confidence 776 3455667788888888888877654433332 23 6777777777776533322 3456
Q ss_pred CCCCCEeeccCCCCCcch-----hhhhcCCCCCCEEeccCCCCC----hHHHHHHhCCCCCcEeEccCCCCChhhH----
Q 013171 299 LCNLKCLELSDTQVGSSG-----LRHLSGLTNLESINLSFTGIS----DGSLRKLAGLSSLKSLNLDARQITDTGL---- 365 (448)
Q Consensus 299 ~~~L~~L~l~~~~~~~~~-----~~~l~~~~~L~~L~l~~~~~~----~~~~~~~~~~~~L~~L~l~~~~l~~~~~---- 365 (448)
+++|+.|++++|.+.... +..+..+++|+.|++++|.+. ...+..+..+++|+.|++++|.++..+.
T Consensus 186 ~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~ 265 (386)
T 2ca6_A 186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV 265 (386)
T ss_dssp CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred CCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHH
Confidence 677777777777766322 114556677777777777765 3334455666777777777777766532
Q ss_pred HHhh--CCCCCCEEEcCCCCCCh----HHHHhh-hCCCCCCEEeeCCCCCChhHH--Hhh-hcCCCCCeecccCC
Q 013171 366 AALT--SLTGLTHLDLFGARITD----SGAAYL-RNFKNLRSLEICGGGLTDAGV--KHI-KDLSSLTLLNLSQN 430 (448)
Q Consensus 366 ~~l~--~~~~L~~L~l~~~~~~~----~~~~~~-~~~~~L~~L~l~~~~~~~~~~--~~l-~~~~~L~~l~l~~~ 430 (448)
..+. .+++|+.|++++|.++. ..+..+ .++++|+.|++++|.+++..+ ..+ ..++.++..++...
T Consensus 266 ~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l~~~ 340 (386)
T 2ca6_A 266 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDEL 340 (386)
T ss_dssp HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEECCC
T ss_pred HHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcCcchhhhc
Confidence 2332 26777777777777766 244444 556777777777777665542 222 23445444444433
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.90 E-value=6e-25 Score=197.05 Aligned_cols=239 Identities=17% Similarity=0.150 Sum_probs=114.6
Q ss_pred ccCCCCCcEEeccCCCccCccccccCcCCCCccEEEecCCCCChHHHHhccCCCCCCeEecCCCCCchhHHHHHhcCCCC
Q 013171 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230 (448)
Q Consensus 151 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 230 (448)
+..+++|++|+++++ .++...+..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+... ...++|
T Consensus 30 ~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l-----~~~~~L 101 (317)
T 3o53_A 30 RQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-----LVGPSI 101 (317)
T ss_dssp HTTGGGCSEEECTTS-CCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEE-----EECTTC
T ss_pred hccCCCCCEEECcCC-ccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccc-----cCCCCc
Confidence 344556666666653 3333444455566666666666665543222 55556666666666554432 133555
Q ss_pred CEEEccCccCChhhHHhhhcCCCCcEEEccCCCcChhHHHHhhCCCCCcEEeccCCccCcchhhhhh-CCCCCCEeeccC
Q 013171 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT-GLCNLKCLELSD 309 (448)
Q Consensus 231 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~l~-~~~~L~~L~l~~ 309 (448)
+.|++++|.+....+ ..+++|+.|++++|.++...+..+..+++|+.|++++|.+....+..+. .+++|+.|++++
T Consensus 102 ~~L~l~~n~l~~~~~---~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~ 178 (317)
T 3o53_A 102 ETLHAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178 (317)
T ss_dssp CEEECCSSCCSEEEE---CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred CEEECCCCccCCcCc---cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCC
Confidence 566655555544322 1234555555555555544333444455555555555555443333332 345555555555
Q ss_pred CCCCcchhhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEccCCCCChhhHHHhhCCCCCCEEEcCCCCCC-hHH
Q 013171 310 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT-DSG 388 (448)
Q Consensus 310 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~-~~~ 388 (448)
|.+.... ....+++|+.|++++|.+....+ .+..+++|+.|++++|.++.. +..+..+++|+.|++++|++. +..
T Consensus 179 N~l~~~~--~~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~~l-~~~~~~l~~L~~L~l~~N~~~~~~~ 254 (317)
T 3o53_A 179 NFIYDVK--GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLI-EKALRFSQNLEHFDLRGNGFHCGTL 254 (317)
T ss_dssp SCCCEEE--CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCEE-CTTCCCCTTCCEEECTTCCCBHHHH
T ss_pred CcCcccc--cccccccCCEEECCCCcCCcchh-hhcccCcccEEECcCCcccch-hhHhhcCCCCCEEEccCCCccCcCH
Confidence 5544321 11224455555555554443322 234444555555555444432 223344444555555555444 333
Q ss_pred HHhhhCCCCCCEEeeC
Q 013171 389 AAYLRNFKNLRSLEIC 404 (448)
Q Consensus 389 ~~~~~~~~~L~~L~l~ 404 (448)
+..+..+++|+.+++.
T Consensus 255 ~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 255 RDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp HHHHHTCHHHHHHHHH
T ss_pred HHHHhccccceEEECC
Confidence 3444444444444444
No 66
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.90 E-value=2.2e-24 Score=193.89 Aligned_cols=231 Identities=17% Similarity=0.121 Sum_probs=147.2
Q ss_pred CCccEEEecCCCCChHHHHhccCCCCCCeEecCCCCCchhHHHHHhcCCCCCEEEccCccCChhhHHhhhcCCCCcEEEc
Q 013171 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259 (448)
Q Consensus 180 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 259 (448)
++++.|+++++.+. ..+..+..+++|++|++++|.+. ..+..+..+++|++|++++|.+. ..+..+..+++|+.|++
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 45556666655554 22333444555555555555544 22334455555555555555544 23334445555555555
Q ss_pred cCCCcChhHHHHhhCCCCCcEEeccCCccCcchhhhhhCCCCCCEeeccCCCCCcchhhhhcCCCCCCEEeccCCCCChH
Q 013171 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339 (448)
Q Consensus 260 ~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 339 (448)
++|...+..+..+. ...+ ...+..+++|+.|++++|.+.. .+..+..+++|+.|++++|.+...
T Consensus 158 ~~n~~~~~~p~~~~------~~~~---------~~~~~~l~~L~~L~L~~n~l~~-lp~~l~~l~~L~~L~L~~N~l~~l 221 (328)
T 4fcg_A 158 RACPELTELPEPLA------STDA---------SGEHQGLVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLSAL 221 (328)
T ss_dssp EEETTCCCCCSCSE------EEC----------CCCEEESTTCCEEEEEEECCCC-CCGGGGGCTTCCEEEEESSCCCCC
T ss_pred CCCCCccccChhHh------hccc---------hhhhccCCCCCEEECcCCCcCc-chHhhcCCCCCCEEEccCCCCCcC
Confidence 54433222111111 0000 0113347788888888887763 455677778888888888877753
Q ss_pred HHHHHhCCCCCcEeEccCCCCChhhHHHhhCCCCCCEEEcCCCCCChHHHHhhhCCCCCCEEeeCCCCCChhHHHhhhcC
Q 013171 340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 419 (448)
Q Consensus 340 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 419 (448)
+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+.+|..+.++
T Consensus 222 -~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L 300 (328)
T 4fcg_A 222 -GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300 (328)
T ss_dssp -CGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGS
T ss_pred -chhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhc
Confidence 3457778888888888887777666677788888888888887777777778888888888888888888888888888
Q ss_pred CCCCeecccCC
Q 013171 420 SSLTLLNLSQN 430 (448)
Q Consensus 420 ~~L~~l~l~~~ 430 (448)
++|+.+++..+
T Consensus 301 ~~L~~l~l~~~ 311 (328)
T 4fcg_A 301 PANCIILVPPH 311 (328)
T ss_dssp CTTCEEECCGG
T ss_pred cCceEEeCCHH
Confidence 88888888766
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.89 E-value=8.4e-24 Score=189.61 Aligned_cols=259 Identities=19% Similarity=0.185 Sum_probs=197.8
Q ss_pred CcEEeccCCCccCccccccCcCCCCccEEEecCCCCChHHHHhccCCCCCCeEecCCCCCchhHHHHHhcCCCCCEEEcc
Q 013171 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236 (448)
Q Consensus 157 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 236 (448)
++..++..+ .+.......+..+++|++|++++|.+.+..+..+..+++|++|++++|.+....+ +..+++|++|+++
T Consensus 12 l~i~~ls~~-~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 12 YKIEKVTDS-SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEESCCTT-THHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred eeEeecccc-chhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 444445442 2222233344567789999999998888777788889999999999988765433 7788999999999
Q ss_pred CccCChhhHHhhhcCCCCcEEEccCCCcChhHHHHhhCCCCCcEEeccCCccCcchhhhhhCCCCCCEeeccCCCCCcch
Q 013171 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 316 (448)
Q Consensus 237 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 316 (448)
+|.+... ...++|+.|++++|.+++..+ ..+++|+.|++++|.+....+..+..+++|+.|++++|.+....
T Consensus 89 ~n~l~~l-----~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 160 (317)
T 3o53_A 89 NNYVQEL-----LVGPSIETLHAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160 (317)
T ss_dssp SSEEEEE-----EECTTCCEEECCSSCCSEEEE---CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred CCccccc-----cCCCCcCEEECCCCccCCcCc---cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc
Confidence 9887643 244789999999888876432 34678999999999888776667778889999999999888766
Q ss_pred hhhh-cCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEccCCCCChhhHHHhhCCCCCCEEEcCCCCCChHHHHhhhCC
Q 013171 317 LRHL-SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 395 (448)
Q Consensus 317 ~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 395 (448)
+..+ ..+++|+.|++++|.+.... ....+++|++|++++|.++.... .+..+++|+.|++++|.++.. +..+..+
T Consensus 161 ~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~~l-~~~~~~l 236 (317)
T 3o53_A 161 FAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLI-EKALRFS 236 (317)
T ss_dssp GGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCEE-CTTCCCC
T ss_pred HHHHhhccCcCCEEECCCCcCcccc--cccccccCCEEECCCCcCCcchh-hhcccCcccEEECcCCcccch-hhHhhcC
Confidence 6555 46788999999999887652 23347889999999998887533 377888999999999988864 5667888
Q ss_pred CCCCEEeeCCCCCC-hhHHHhhhcCCCCCeecccCC
Q 013171 396 KNLRSLEICGGGLT-DAGVKHIKDLSSLTLLNLSQN 430 (448)
Q Consensus 396 ~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~l~l~~~ 430 (448)
++|+.|++++|.+. +..+..+..+++|+.+++++|
T Consensus 237 ~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 237 QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp TTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence 89999999999888 667778888888888888754
No 68
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=3.3e-22 Score=184.62 Aligned_cols=186 Identities=22% Similarity=0.250 Sum_probs=80.9
Q ss_pred cCCCCCCeEecCCCCCch----hHHHHHhcCCCCCEEEccCccCChhhHHhhh----cC---------CCCcEEEccCCC
Q 013171 201 KGLQKLTLLNLEGCPVTA----ACLDSLSALGSLFYLNLNRCQLSDDGCEKFS----KI---------GSLKVLNLGFNE 263 (448)
Q Consensus 201 ~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~----~~---------~~L~~L~l~~~~ 263 (448)
..+++|++|++++|.+.. ..+..+..+++|+.|++++|.+....+..+. .+ ++|++|++++|.
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 344555555555554443 2333444455555555555554332222222 12 455555555554
Q ss_pred cChh-HH---HHhhCCCCCcEEeccCCccCcch----hh-hhhCCCCCCEeeccCCCCC----cchhhhhcCCCCCCEEe
Q 013171 264 ITDE-CL---VHLKGLTNLESLNLDSCGIGDEG----LV-NLTGLCNLKCLELSDTQVG----SSGLRHLSGLTNLESIN 330 (448)
Q Consensus 264 ~~~~-~~---~~l~~~~~L~~l~l~~~~~~~~~----~~-~l~~~~~L~~L~l~~~~~~----~~~~~~l~~~~~L~~L~ 330 (448)
+++. .+ ..+..+++|+.|++++|.+...+ .. .+..+++|+.|++++|.++ ...+..+..+++|+.|+
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ 250 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG 250 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence 4421 11 12334445555555555444221 11 3334455555555555443 11223344445555555
Q ss_pred ccCCCCChHH----HHHHhC--CCCCcEeEccCCCCChh----hHHHh-hCCCCCCEEEcCCCCCCh
Q 013171 331 LSFTGISDGS----LRKLAG--LSSLKSLNLDARQITDT----GLAAL-TSLTGLTHLDLFGARITD 386 (448)
Q Consensus 331 l~~~~~~~~~----~~~~~~--~~~L~~L~l~~~~l~~~----~~~~l-~~~~~L~~L~l~~~~~~~ 386 (448)
+++|.+.+.. +..+.. +++|+.|++++|.++.. .+..+ .++++|+.|++++|++++
T Consensus 251 L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred CCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence 5555554432 222211 45555555555555442 22222 234555555555555444
No 69
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=4.2e-23 Score=188.65 Aligned_cols=89 Identities=24% Similarity=0.309 Sum_probs=38.4
Q ss_pred CCCCccEEEecCCCCChHHH----HhccCCC-CCCeEecCCCCCchhHHHHHhcC-----CCCCEEEccCccCChhhHHh
Q 013171 178 GLTNLKSLQISCSKVTDSGI----AYLKGLQ-KLTLLNLEGCPVTAACLDSLSAL-----GSLFYLNLNRCQLSDDGCEK 247 (448)
Q Consensus 178 ~~~~L~~L~l~~~~~~~~~~----~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~ 247 (448)
..++|++|++++|.+.+... ..+..++ +|++|++++|.+....+..+..+ ++|++|++++|.+.+..+..
T Consensus 20 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~ 99 (362)
T 3goz_A 20 IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDE 99 (362)
T ss_dssp SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHH
T ss_pred CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHH
Confidence 33345555555554444333 3334444 45555555554443323223222 45555555555444333222
Q ss_pred h----hcC-CCCcEEEccCCCcCh
Q 013171 248 F----SKI-GSLKVLNLGFNEITD 266 (448)
Q Consensus 248 l----~~~-~~L~~L~l~~~~~~~ 266 (448)
+ ... ++|+.|++++|.+++
T Consensus 100 l~~~l~~~~~~L~~L~Ls~N~l~~ 123 (362)
T 3goz_A 100 LVKTLAAIPFTITVLDLGWNDFSS 123 (362)
T ss_dssp HHHHHHTSCTTCCEEECCSSCGGG
T ss_pred HHHHHHhCCCCccEEECcCCcCCc
Confidence 2 222 445555555444443
No 70
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.89 E-value=5.5e-24 Score=191.32 Aligned_cols=236 Identities=19% Similarity=0.168 Sum_probs=163.8
Q ss_pred CCCCCcEEeccCCCccCccccccCcCCCCccEEEecCCCCChHHHHhccCCCCCCeEecCCCCCchhHHHHHhcCCCCCE
Q 013171 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232 (448)
Q Consensus 153 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 232 (448)
..+++++|+++++. +. ..+..+..+++|++|++++|.+. ..+..+..+++|++|++++|.+.. .+..+..+++|+.
T Consensus 79 ~~~~l~~L~L~~n~-l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~ 154 (328)
T 4fcg_A 79 TQPGRVALELRSVP-LP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRA-LPASIASLNRLRE 154 (328)
T ss_dssp TSTTCCEEEEESSC-CS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCC-CCGGGGGCTTCCE
T ss_pred cccceeEEEccCCC-ch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCcccc-CcHHHhcCcCCCE
Confidence 35789999999854 44 44566778999999999999988 566778899999999999998874 4677899999999
Q ss_pred EEccCccCChhhHHhhhcCCCCcEEEccCCCcChhHHHHhhCCCCCcEEeccCCccCcchhhhhhCCCCCCEeeccCCCC
Q 013171 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 312 (448)
Q Consensus 233 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 312 (448)
|++++|.+....+..+.. ..+. ..+..+++|+.|++++|.+. ..+..++.+++|+.|++++|.+
T Consensus 155 L~L~~n~~~~~~p~~~~~------~~~~---------~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l 218 (328)
T 4fcg_A 155 LSIRACPELTELPEPLAS------TDAS---------GEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPL 218 (328)
T ss_dssp EEEEEETTCCCCCSCSEE------EC-C---------CCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCC
T ss_pred EECCCCCCccccChhHhh------ccch---------hhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCC
Confidence 999998766555443322 1111 11334555555555555554 3334455566666666666665
Q ss_pred CcchhhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEccCCCCChhhHHHhhCCCCCCEEEcCCCCCChHHHHhh
Q 013171 313 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392 (448)
Q Consensus 313 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 392 (448)
... +..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+
T Consensus 219 ~~l-~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l 297 (328)
T 4fcg_A 219 SAL-GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297 (328)
T ss_dssp CCC-CGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGG
T ss_pred CcC-chhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHH
Confidence 542 3345566666666666666655555556667777777777776666556667777788888888877777777777
Q ss_pred hCCCCCCEEeeCCCCCC
Q 013171 393 RNFKNLRSLEICGGGLT 409 (448)
Q Consensus 393 ~~~~~L~~L~l~~~~~~ 409 (448)
.++++|+.+++..+.+.
T Consensus 298 ~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 298 AQLPANCIILVPPHLQA 314 (328)
T ss_dssp GGSCTTCEEECCGGGSC
T ss_pred hhccCceEEeCCHHHHH
Confidence 77888888877765443
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.88 E-value=8.3e-25 Score=195.67 Aligned_cols=248 Identities=18% Similarity=0.165 Sum_probs=185.3
Q ss_pred cCCCCccEEEecCCCCChHHHHhccCCCCCCeEecCCCCCch-hHHHH-------HhcCCCCCEEEccCccCChhhHHhh
Q 013171 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA-ACLDS-------LSALGSLFYLNLNRCQLSDDGCEKF 248 (448)
Q Consensus 177 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~-------~~~~~~L~~L~l~~~~~~~~~~~~l 248 (448)
+..++|+.++++++.+ ..+..+... ++.|+++++.+.. ..+.. +..+++|++|++++|.+.+..+..+
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred ccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 3445666777776666 222222211 6666666665422 11222 2368899999999999876666554
Q ss_pred --hcCCCCcEEEccCCCcChhHHHHhhCC-----CCCcEEeccCCccCcchhhhhhCCCCCCEeeccCCCCCcc--hhhh
Q 013171 249 --SKIGSLKVLNLGFNEITDECLVHLKGL-----TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS--GLRH 319 (448)
Q Consensus 249 --~~~~~L~~L~l~~~~~~~~~~~~l~~~-----~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~ 319 (448)
..+++|+.|++++|.+++. +..+..+ ++|++|++++|.+....+..++.+++|+.|++++|.+.+. .+..
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 194 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence 7889999999999988765 4444443 8999999999999887778888999999999999987653 2333
Q ss_pred h--cCCCCCCEEeccCCCCCh---HHHHHHhCCCCCcEeEccCCCCChhhH-HHhhCCCCCCEEEcCCCCCChHHHHhhh
Q 013171 320 L--SGLTNLESINLSFTGISD---GSLRKLAGLSSLKSLNLDARQITDTGL-AALTSLTGLTHLDLFGARITDSGAAYLR 393 (448)
Q Consensus 320 l--~~~~~L~~L~l~~~~~~~---~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 393 (448)
+ ..+++|++|++++|.+.. .....+..+++|+.|++++|.+++..+ ..+..+++|+.|++++|.++. .+..+.
T Consensus 195 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~ 273 (312)
T 1wwl_A 195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ-VPKGLP 273 (312)
T ss_dssp SCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSS-CCSSCC
T ss_pred HHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccCh-hhhhcc
Confidence 3 788999999999999984 333455688999999999999987642 345567999999999999985 355443
Q ss_pred CCCCCCEEeeCCCCCChhHHHhhhcCCCCCeecccCCCCCCH
Q 013171 394 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 435 (448)
Q Consensus 394 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~l~~ 435 (448)
++|++|++++|++++. |. +..+++|+.|++++| .+++
T Consensus 274 --~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N-~l~~ 310 (312)
T 1wwl_A 274 --AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGN-PFLD 310 (312)
T ss_dssp --SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTC-TTTC
T ss_pred --CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCC-CCCC
Confidence 8999999999999887 44 889999999999999 4554
No 72
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=2.2e-21 Score=175.86 Aligned_cols=248 Identities=17% Similarity=0.179 Sum_probs=178.0
Q ss_pred CccEEEecCCCCChHHHHhccCC--CCCCeEecCCCCCchhHHHHHhcCCCCCEEEccCccCChh-hHHhhhcCCCCcEE
Q 013171 181 NLKSLQISCSKVTDSGIAYLKGL--QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD-GCEKFSKIGSLKVL 257 (448)
Q Consensus 181 ~L~~L~l~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L 257 (448)
.++.++++++.+... .+..+ ++++.+++.++.+....+. +..+++|++|++++|.+... .+..+..+++|++|
T Consensus 48 ~~~~l~l~~~~~~~~---~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLHPD---VTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCCHH---HHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCCHH---HHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 467888888877743 33344 6788888888866554332 45678899999988887765 55667788889999
Q ss_pred EccCCCcChhHHHHhhCCCCCcEEeccCC-ccCcc-hhhhhhCCCCCCEeeccCC-CCCcc-hhhhhcCCC-CCCEEecc
Q 013171 258 NLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDE-GLVNLTGLCNLKCLELSDT-QVGSS-GLRHLSGLT-NLESINLS 332 (448)
Q Consensus 258 ~l~~~~~~~~~~~~l~~~~~L~~l~l~~~-~~~~~-~~~~l~~~~~L~~L~l~~~-~~~~~-~~~~l~~~~-~L~~L~l~ 332 (448)
++++|.+++..+..+..+++|++|++++| .+++. .+..+..+++|+.|++.+| .+++. .+..+..++ +|++|+++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence 99888888777778888888999999888 56643 3334667888888888888 77654 345567778 88888888
Q ss_pred CC--CCC-hHHHHHHhCCCCCcEeEccCCC-CChhhHHHhhCCCCCCEEEcCCC-CCChHHHHhhhCCCCCCEEeeCCCC
Q 013171 333 FT--GIS-DGSLRKLAGLSSLKSLNLDARQ-ITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEICGGG 407 (448)
Q Consensus 333 ~~--~~~-~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~ 407 (448)
+| .+. ...+..+..+++|+.|++++|. +++..+..+..+++|+.|++++| .+.......+..+++|+.|++++|
T Consensus 204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~- 282 (336)
T 2ast_B 204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI- 282 (336)
T ss_dssp SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-
T ss_pred CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-
Confidence 88 555 3344556678888888888887 67666777788888888888888 455444456777888888888888
Q ss_pred CChhHHHhhhcCCCCCeecccCCCCCCHH
Q 013171 408 LTDAGVKHIKDLSSLTLLNLSQNCNLTDK 436 (448)
Q Consensus 408 ~~~~~~~~l~~~~~L~~l~l~~~~~l~~~ 436 (448)
+.+.....+. .+++.|++++| .++..
T Consensus 283 i~~~~~~~l~--~~l~~L~l~~n-~l~~~ 308 (336)
T 2ast_B 283 VPDGTLQLLK--EALPHLQINCS-HFTTI 308 (336)
T ss_dssp SCTTCHHHHH--HHSTTSEESCC-CSCCT
T ss_pred cCHHHHHHHH--hhCcceEEecc-cCccc
Confidence 6554444442 22444556665 55543
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=5e-23 Score=195.01 Aligned_cols=236 Identities=17% Similarity=0.156 Sum_probs=126.2
Q ss_pred CCCCCcEEeccCCCccCccccccCcCCCCccEEEecCCCCChHHHHhccCCCCCCeEecCCCCCchhHHHHHhcCCCCCE
Q 013171 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232 (448)
Q Consensus 153 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 232 (448)
.+++|++|+++++ .+....+..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+... ...++|+.
T Consensus 32 ~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-----~~~~~L~~ 103 (487)
T 3oja_A 32 SAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-----LVGPSIET 103 (487)
T ss_dssp TGGGCCEEECCSS-CCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-----EECTTCCE
T ss_pred cCCCccEEEeeCC-cCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-----CCCCCcCE
Confidence 3456777777764 3444555566677777777777776654332 56666777777776655432 23366666
Q ss_pred EEccCccCChhhHHhhhcCCCCcEEEccCCCcChhHHHHhhCCCCCcEEeccCCccCcchhhhhh-CCCCCCEeeccCCC
Q 013171 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT-GLCNLKCLELSDTQ 311 (448)
Q Consensus 233 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~ 311 (448)
|++++|.+....+ ..+++|+.|++++|.+++..+..+..+++|+.|++++|.+....+..+. .+++|+.|++++|.
T Consensus 104 L~L~~N~l~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 104 LHAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp EECCSSCCCCEEE---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred EECcCCcCCCCCc---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence 6666666654332 2345566666666665554444455555666666666655554444443 45556666666655
Q ss_pred CCcchhhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEccCCCCChhhHHHhhCCCCCCEEEcCCCCCC-hHHHH
Q 013171 312 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT-DSGAA 390 (448)
Q Consensus 312 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~ 390 (448)
+.... ....+++|+.|++++|.+....+ .+..+++|+.|++++|.++.. +..+..+++|+.|++++|++. +..+.
T Consensus 181 l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~l-p~~l~~l~~L~~L~l~~N~l~c~~~~~ 256 (487)
T 3oja_A 181 IYDVK--GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLI-EKALRFSQNLEHFDLRGNGFHCGTLRD 256 (487)
T ss_dssp CCEEE--CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCEE-CTTCCCCTTCCEEECTTCCBCHHHHHH
T ss_pred ccccc--ccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCccc-chhhccCCCCCEEEcCCCCCcCcchHH
Confidence 54431 12234555555555555544322 244455555555555555432 223444455555555555554 23334
Q ss_pred hhhCCCCCCEEee
Q 013171 391 YLRNFKNLRSLEI 403 (448)
Q Consensus 391 ~~~~~~~L~~L~l 403 (448)
.+..++.|+.+++
T Consensus 257 ~~~~l~~L~~l~~ 269 (487)
T 3oja_A 257 FFSKNQRVQTVAK 269 (487)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHHhCCCCcEEec
Confidence 4444444444444
No 74
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.86 E-value=1.1e-20 Score=182.58 Aligned_cols=268 Identities=15% Similarity=0.075 Sum_probs=200.1
Q ss_pred CCCCEEeCCCCccccHHHHHHHhCCCCCcEEecCCccccccchhhccCCCCCcEEeccCCCccCccccccCcCCCCccEE
Q 013171 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSL 185 (448)
Q Consensus 106 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 185 (448)
.++++|+++++... .+|..+. ++|++|++++|... ..+. .+++|++|++++|. ++.... .+++|++|
T Consensus 40 ~~l~~L~ls~n~L~--~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~-l~~lp~----~l~~L~~L 106 (622)
T 3g06_A 40 NGNAVLNVGESGLT--TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQ-LTSLPV----LPPGLLEL 106 (622)
T ss_dssp HCCCEEECCSSCCS--CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCC-CSCCCC----CCTTCCEE
T ss_pred CCCcEEEecCCCcC--ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCc-CCcCCC----CCCCCCEE
Confidence 46899999998752 3343332 79999999987543 3333 57899999999864 443222 67899999
Q ss_pred EecCCCCChHHHHhccCCCCCCeEecCCCCCchhHHHHHhcCCCCCEEEccCccCChhhHHhhhcCCCCcEEEccCCCcC
Q 013171 186 QISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265 (448)
Q Consensus 186 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 265 (448)
++++|.++.... .+++|+.|++++|.+... +. .+++|++|++++|.+.... ..+++|+.|++++|.++
T Consensus 107 ~Ls~N~l~~l~~----~l~~L~~L~L~~N~l~~l-p~---~l~~L~~L~Ls~N~l~~l~----~~~~~L~~L~L~~N~l~ 174 (622)
T 3g06_A 107 SIFSNPLTHLPA----LPSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLASLP----ALPSELCKLWAYNNQLT 174 (622)
T ss_dssp EECSCCCCCCCC----CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCS
T ss_pred ECcCCcCCCCCC----CCCCcCEEECCCCCCCcC-CC---CCCCCCEEECcCCcCCCcC----CccCCCCEEECCCCCCC
Confidence 999998875322 568899999999887653 21 3588999999999876532 24578999999998887
Q ss_pred hhHHHHhhCCCCCcEEeccCCccCcchhhhhhCCCCCCEeeccCCCCCcchhhhhcCCCCCCEEeccCCCCChHHHHHHh
Q 013171 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345 (448)
Q Consensus 266 ~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 345 (448)
... ..+++|+.|++++|.+..... .+++|+.|.+.+|.+.... ..+++|+.|++++|.+.... .
T Consensus 175 ~l~----~~~~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~L~~lp----~ 238 (622)
T 3g06_A 175 SLP----MLPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLTSLP----ALPSGLKELIVSGNRLTSLP----V 238 (622)
T ss_dssp CCC----CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSCC----CCCTTCCEEECCSSCCSCCC----C
T ss_pred CCc----ccCCCCcEEECCCCCCCCCCC----ccchhhEEECcCCcccccC----CCCCCCCEEEccCCccCcCC----C
Confidence 532 456889999999988764321 3478999999998877533 23478999999999887633 4
Q ss_pred CCCCCcEeEccCCCCChhhHHHhhCCCCCCEEEcCCCCCChHHHHhhhCCCCCCEEeeCCCCCChhHHHhhhcC
Q 013171 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 419 (448)
Q Consensus 346 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 419 (448)
.+++|+.|++++|.++.... .+++|+.|++++|.++.. |..+.++++|+.|++++|.+.+..+..+..+
T Consensus 239 ~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~l-p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 239 LPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTRL-PESLIHLSSETTVNLEGNPLSERTLQALREI 307 (622)
T ss_dssp CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCCSC-CGGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred CCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCCcC-CHHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence 56889999999998886432 578899999999988854 6678889999999999999988888776544
No 75
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=1.4e-22 Score=191.93 Aligned_cols=238 Identities=20% Similarity=0.210 Sum_probs=197.0
Q ss_pred cCCCCccEEEecCCCCChHHHHhccCCCCCCeEecCCCCCchhHHHHHhcCCCCCEEEccCccCChhhHHhhhcCCCCcE
Q 013171 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 256 (448)
Q Consensus 177 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 256 (448)
..+++|++|++++|.+.+..+..+..+++|++|++++|.+....+ +..+++|+.|++++|.+.... ..++|+.
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~ 103 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIET 103 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCE
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCE
Confidence 345689999999999988777888999999999999998876443 788999999999999876532 3489999
Q ss_pred EEccCCCcChhHHHHhhCCCCCcEEeccCCccCcchhhhhhCCCCCCEeeccCCCCCcchhhhhc-CCCCCCEEeccCCC
Q 013171 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS-GLTNLESINLSFTG 335 (448)
Q Consensus 257 L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~ 335 (448)
|++++|.+++..+ ..+++|+.|++++|.+....+..++.+++|+.|++++|.+....+..+. .+++|+.|++++|.
T Consensus 104 L~L~~N~l~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 104 LHAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp EECCSSCCCCEEE---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred EECcCCcCCCCCc---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence 9999998876543 3568899999999998877777788889999999999999887776665 78999999999998
Q ss_pred CChHHHHHHhCCCCCcEeEccCCCCChhhHHHhhCCCCCCEEEcCCCCCChHHHHhhhCCCCCCEEeeCCCCCC-hhHHH
Q 013171 336 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT-DAGVK 414 (448)
Q Consensus 336 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~ 414 (448)
+.+.. ....+++|+.|++++|.+++..+ .+..+++|+.|++++|.+++ .|..+..+++|+.|++++|.+. +..+.
T Consensus 181 l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~ 256 (487)
T 3oja_A 181 IYDVK--GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRD 256 (487)
T ss_dssp CCEEE--CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHH
T ss_pred ccccc--ccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHH
Confidence 88652 23458999999999999987643 47788999999999999987 4666788899999999999988 66677
Q ss_pred hhhcCCCCCeeccc
Q 013171 415 HIKDLSSLTLLNLS 428 (448)
Q Consensus 415 ~l~~~~~L~~l~l~ 428 (448)
.+..++.|+.+++.
T Consensus 257 ~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 257 FFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHHhCCCCcEEecc
Confidence 78888888888775
No 76
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.86 E-value=1.4e-23 Score=187.72 Aligned_cols=210 Identities=22% Similarity=0.256 Sum_probs=96.8
Q ss_pred hcCCCCCCEEeCCCCccccHHHHHHHhCCCCCcEEecCCcccccc-chhhcc-------CCCCCcEEeccCCCccCcccc
Q 013171 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLK-------GLMKLESLNIKWCNCITDSDM 173 (448)
Q Consensus 102 l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~-------~l~~L~~L~l~~~~~~~~~~~ 173 (448)
++..++|++|+++++.. ..|..+... |+.|+++++..... .+..+. .+++|++|++++|. +++..+
T Consensus 39 ~~~~~~L~~l~l~~n~l---~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~ 112 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE---ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLE-VTGTAP 112 (312)
T ss_dssp EEEEEECTTHHHHCCTT---CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEB-CBSCCC
T ss_pred EccCCCceeEeeccccc---ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCc-ccchhH
Confidence 34556788888877764 233333322 77777776543221 222222 46667777776643 332333
Q ss_pred ccC--cCCCCccEEEecCCCCChHHHHhccCCCCCCeEecCCCCCchhHHHHHhcCCCCCEEEccCccCChhhHHhhhcC
Q 013171 174 KPL--SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 251 (448)
Q Consensus 174 ~~~--~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 251 (448)
..+ ..+++|++|++++|.+.+. +..+..+. ...+++|++|++++|.+....+..+..+
T Consensus 113 ~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~-------------------~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 113 PPLLEATGPDLNILNLRNVSWATR-DAWLAELQ-------------------QWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp CCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHH-------------------TTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred HHHHHhcCCCccEEEccCCCCcch-hHHHHHHH-------------------HhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 333 5566666666666665543 22222220 0001445555555555444444444445
Q ss_pred CCCcEEEccCCCcChh--HHHHh--hCCCCCcEEeccCCccCcc---hhhhhhCCCCCCEeeccCCCCCcchh-hhhcCC
Q 013171 252 GSLKVLNLGFNEITDE--CLVHL--KGLTNLESLNLDSCGIGDE---GLVNLTGLCNLKCLELSDTQVGSSGL-RHLSGL 323 (448)
Q Consensus 252 ~~L~~L~l~~~~~~~~--~~~~l--~~~~~L~~l~l~~~~~~~~---~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~~ 323 (448)
++|+.|++++|.+.+. .+..+ ..+++|++|++++|.+... ....+..+++|+.|++++|.+.+..+ ..+..+
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 252 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence 5555555555544332 11222 4445555555555544321 11122334455555555554443221 222333
Q ss_pred CCCCEEeccCCCCC
Q 013171 324 TNLESINLSFTGIS 337 (448)
Q Consensus 324 ~~L~~L~l~~~~~~ 337 (448)
++|+.|++++|.++
T Consensus 253 ~~L~~L~Ls~N~l~ 266 (312)
T 1wwl_A 253 SQLNSLNLSFTGLK 266 (312)
T ss_dssp TTCCEEECTTSCCS
T ss_pred CCCCEEECCCCccC
Confidence 44444444444443
No 77
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.86 E-value=3.8e-22 Score=175.36 Aligned_cols=205 Identities=21% Similarity=0.199 Sum_probs=118.5
Q ss_pred CCCCeEecCCCCCchhHHHHHhcCCCCCEEEccCccCChhhHHhhhcCCCCcEEEccCCCcChhHHHHhhCCCCCcEEec
Q 013171 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283 (448)
Q Consensus 204 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l 283 (448)
+++++|+++++.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.++...+..+..+++|+.|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 45777777777666554445666677777777777666555555666666777777666665554455666666666666
Q ss_pred cCCccCcchhhhhhCCCCCCEeeccCCCCCcch-hhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCc----EeEccCC
Q 013171 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG-LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK----SLNLDAR 358 (448)
Q Consensus 284 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~----~L~l~~~ 358 (448)
.++.+.......+..+++|+.|++++|.+.... +..+..+++|+.|++++|.+.+..+..+..+++|+ .|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 666655544444556666666666666655432 44555566666666666665554333333333333 5566666
Q ss_pred CCChhhHHHhhCCCCCCEEEcCCCCCChHHHHhhhCCCCCCEEeeCCCCCC
Q 013171 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 409 (448)
Q Consensus 359 ~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 409 (448)
.+.......+ ...+|+.|++++|.+++..+..+..+++|+.|++++|++.
T Consensus 188 ~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 188 PMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp CCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred cccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 5554432222 2235666666666655544444555666666666655554
No 78
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.86 E-value=5.4e-21 Score=184.71 Aligned_cols=267 Identities=18% Similarity=0.044 Sum_probs=206.6
Q ss_pred CCCCeEeccCCcccChhHHHhhcCCCCCCEEeCCCCccccHHHHHHHhCCCCCcEEecCCccccccchhhccCCCCCcEE
Q 013171 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESL 160 (448)
Q Consensus 81 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 160 (448)
.+++.|+++++ .+... +..+. ++|++|++++|.+. . ++. .+++|++|++++|... ..+. .+++|++|
T Consensus 40 ~~l~~L~ls~n-~L~~l-p~~l~--~~L~~L~L~~N~l~-~-lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L 106 (622)
T 3g06_A 40 NGNAVLNVGES-GLTTL-PDCLP--AHITTLVIPDNNLT-S-LPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLEL 106 (622)
T ss_dssp HCCCEEECCSS-CCSCC-CSCCC--TTCSEEEECSCCCS-C-CCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEE
T ss_pred CCCcEEEecCC-CcCcc-ChhhC--CCCcEEEecCCCCC-C-CCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEE
Confidence 46999999986 55543 33333 79999999999853 2 222 6899999999998643 3333 67999999
Q ss_pred eccCCCccCccccccCcCCCCccEEEecCCCCChHHHHhccCCCCCCeEecCCCCCchhHHHHHhcCCCCCEEEccCccC
Q 013171 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240 (448)
Q Consensus 161 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 240 (448)
++++|. ++.... .+++|+.|++++|.++... ..+++|++|++++|.+... + ..+++|+.|++++|.+
T Consensus 107 ~Ls~N~-l~~l~~----~l~~L~~L~L~~N~l~~lp----~~l~~L~~L~Ls~N~l~~l-~---~~~~~L~~L~L~~N~l 173 (622)
T 3g06_A 107 SIFSNP-LTHLPA----LPSGLCKLWIFGNQLTSLP----VLPPGLQELSVSDNQLASL-P---ALPSELCKLWAYNNQL 173 (622)
T ss_dssp EECSCC-CCCCCC----CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSCC
T ss_pred ECcCCc-CCCCCC----CCCCcCEEECCCCCCCcCC----CCCCCCCEEECcCCcCCCc-C---CccCCCCEEECCCCCC
Confidence 999854 433222 5689999999999887532 2358999999999987653 2 2467899999999998
Q ss_pred ChhhHHhhhcCCCCcEEEccCCCcChhHHHHhhCCCCCcEEeccCCccCcchhhhhhCCCCCCEeeccCCCCCcchhhhh
Q 013171 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 320 (448)
Q Consensus 241 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l 320 (448)
.... ..+++|+.|++++|.+++.. ..+++|+.|++.+|.+..... .+++|+.|++++|.+....
T Consensus 174 ~~l~----~~~~~L~~L~Ls~N~l~~l~----~~~~~L~~L~L~~N~l~~l~~----~~~~L~~L~Ls~N~L~~lp---- 237 (622)
T 3g06_A 174 TSLP----MLPSGLQELSVSDNQLASLP----TLPSELYKLWAYNNRLTSLPA----LPSGLKELIVSGNRLTSLP---- 237 (622)
T ss_dssp SCCC----CCCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSSCCC----CCTTCCEEECCSSCCSCCC----
T ss_pred CCCc----ccCCCCcEEECCCCCCCCCC----CccchhhEEECcCCcccccCC----CCCCCCEEEccCCccCcCC----
Confidence 7633 45789999999999887522 235799999999998874331 3578999999999887643
Q ss_pred cCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEccCCCCChhhHHHhhCCCCCCEEEcCCCCCChHHHHhhhC
Q 013171 321 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394 (448)
Q Consensus 321 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 394 (448)
..+++|+.|++++|.+..... .+++|+.|++++|.++.. +..+..+++|+.|++++|++++..+..+..
T Consensus 238 ~~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~l-p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~ 306 (622)
T 3g06_A 238 VLPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTRL-PESLIHLSSETTVNLEGNPLSERTLQALRE 306 (622)
T ss_dssp CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCCSC-CGGGGGSCTTCEEECCSCCCCHHHHHHHHH
T ss_pred CCCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCCcC-CHHHhhccccCEEEecCCCCCCcCHHHHHh
Confidence 556899999999998876432 578999999999999954 567889999999999999999988776643
No 79
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.86 E-value=1.2e-21 Score=171.46 Aligned_cols=203 Identities=22% Similarity=0.224 Sum_probs=144.5
Q ss_pred CCCCeEecCCCCCchhHHHHHhcCCCCCEEEccCccCChhhHHhhhcCCCCcEEEccCCCcChhHHHHhhCCCCCcEEec
Q 013171 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283 (448)
Q Consensus 204 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l 283 (448)
...++++++++.+... +.. -.++++.|++++|.+....+..+..+++|++|++++|.++......+..+++|++|++
T Consensus 16 ~~~~~l~~~~~~l~~i-p~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAI-PSN--IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTTEEECTTSCCSSC-CSC--CCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCCEEEccCCCCCcc-CCC--CCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 3467777777766543 221 1256888888888877665566777788888888887776554455667778888888
Q ss_pred cCCccCcchhhhhhCCCCCCEeeccCCCCCcchhhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEccCCCCChh
Q 013171 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 363 (448)
Q Consensus 284 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 363 (448)
+++.+....+..+..+++|+.|++.+|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.++..
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 172 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV 172 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe
Confidence 87777766666667777888888888777766666667777888888887777765555566777778888777777766
Q ss_pred hHHHhhCCCCCCEEEcCCCCCChHHHHhhhCCCCCCEEeeCCCCCC
Q 013171 364 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 409 (448)
Q Consensus 364 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 409 (448)
....+..+++|+.|++++|.+++..+..+..+++|+.|++++|++.
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 5556667777777777777777665556677777777777777653
No 80
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.85 E-value=1.2e-20 Score=172.43 Aligned_cols=260 Identities=15% Similarity=0.191 Sum_probs=199.6
Q ss_pred EEEecCCCCChHHHHhccCCCCCCeEecCCCCCchhHH----HHHhcCC-CCCEEEccCccCChhhHHhhhcC-----CC
Q 013171 184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL----DSLSALG-SLFYLNLNRCQLSDDGCEKFSKI-----GS 253 (448)
Q Consensus 184 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~----~~~~~~~-~L~~L~l~~~~~~~~~~~~l~~~-----~~ 253 (448)
+++++.+.+++..+..+...++|++|++++|.+....+ ..+..++ +|++|++++|.+....+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 46788888988888777777889999999998877555 6778888 99999999999987766666553 89
Q ss_pred CcEEEccCCCcChhHHH----HhhCC-CCCcEEeccCCccCcchhhhhh----C-CCCCCEeeccCCCCCcchhhh----
Q 013171 254 LKVLNLGFNEITDECLV----HLKGL-TNLESLNLDSCGIGDEGLVNLT----G-LCNLKCLELSDTQVGSSGLRH---- 319 (448)
Q Consensus 254 L~~L~l~~~~~~~~~~~----~l~~~-~~L~~l~l~~~~~~~~~~~~l~----~-~~~L~~L~l~~~~~~~~~~~~---- 319 (448)
|++|++++|.+++..+. .+..+ ++|+.|++++|.++......+. . .++|+.|++++|.+++.....
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 99999999998765444 34555 8999999999998876665543 3 369999999999988654433
Q ss_pred hcCCC-CCCEEeccCCCCChHHHHH----HhCC-CCCcEeEccCCCCChhhHH----HhhC-CCCCCEEEcCCCCCChHH
Q 013171 320 LSGLT-NLESINLSFTGISDGSLRK----LAGL-SSLKSLNLDARQITDTGLA----ALTS-LTGLTHLDLFGARITDSG 388 (448)
Q Consensus 320 l~~~~-~L~~L~l~~~~~~~~~~~~----~~~~-~~L~~L~l~~~~l~~~~~~----~l~~-~~~L~~L~l~~~~~~~~~ 388 (448)
+...+ +|++|++++|.+.+..+.. +..+ ++|++|++++|.+++.+.. .+.. .++|+.|++++|.+.+.+
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 35555 9999999999887655543 4455 5999999999999874433 4444 569999999999998754
Q ss_pred H----HhhhCCCCCCEEeeCCCC---CChhH----HHhhhcCCCCCeecccCCCCCCHHHHHHHHhh
Q 013171 389 A----AYLRNFKNLRSLEICGGG---LTDAG----VKHIKDLSSLTLLNLSQNCNLTDKTLELISGI 444 (448)
Q Consensus 389 ~----~~~~~~~~L~~L~l~~~~---~~~~~----~~~l~~~~~L~~l~l~~~~~l~~~~~~~l~~~ 444 (448)
+ ..+..+++|++|++++|. +.... +..+..+++|+.+++++| .+.+.....+...
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N-~l~~~~~~~~~~~ 307 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGK-EIHPSHSIPISNL 307 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSC-BCCGGGCHHHHHH
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCC-cCCCcchHHHHHH
Confidence 4 344778999999999998 44332 234567889999999999 6776644444433
No 81
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.85 E-value=3.2e-21 Score=169.98 Aligned_cols=202 Identities=20% Similarity=0.111 Sum_probs=112.4
Q ss_pred ccCCCCCCeEecCCCCCchhHHHHHhcCCCCCEEEccCccCChhhHHhhhcCCCCcEEEccCCCcChhHHHHhhCCCCCc
Q 013171 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279 (448)
Q Consensus 200 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 279 (448)
+..+++++.+++.++.+... +..+ .++++.|++++|.+....+..+..+++|+.|++++|.++.... ...+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~i-p~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTAL-PPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSSC-CSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred ccccCCccEEECCCCCCCcC-CCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence 45566677777776665543 2111 2566777777776666555566666667777666666554321 14556666
Q ss_pred EEeccCCccCcchhhhhhCCCCCCEeeccCCCCCcchhhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEccCCC
Q 013171 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359 (448)
Q Consensus 280 ~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 359 (448)
.|+++++.+.. .+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.
T Consensus 81 ~L~Ls~N~l~~-l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCCc-CchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 66666665542 22334455566666666666555444455555666666666665555444445555555666665555
Q ss_pred CChhhHHHhhCCCCCCEEEcCCCCCChHHHHhhhCCCCCCEEeeCCCCC
Q 013171 360 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 408 (448)
Q Consensus 360 l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 408 (448)
++......+..+++|+.|++++|+++.. +..+...++|+.+++.+|++
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~~i-p~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLYTI-PKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCCCSEEECCSCCB
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCCcc-ChhhcccccCCeEEeCCCCc
Confidence 5544333444555555555555555532 33333445555555555544
No 82
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.84 E-value=1.8e-21 Score=171.00 Aligned_cols=205 Identities=21% Similarity=0.201 Sum_probs=124.6
Q ss_pred CCccEEEecCCCCChHHHHhccCCCCCCeEecCCCCCchhHHHHHhcCCCCCEEEccCccCChhhHHhhhcCCCCcEEEc
Q 013171 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259 (448)
Q Consensus 180 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 259 (448)
++|++|+++++.+.+..+..+..+++|++|+++++.+....+..+..+++|++|++++|.+....+..+..+++|+.|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 35666777766666555555666667777777766665544445666667777777776666555555666667777777
Q ss_pred cCCCcChhHHHHhhCCCCCcEEeccCCccCcch-hhhhhCCCCCCEeeccCCCCCcchhhhhcCCCCCC----EEeccCC
Q 013171 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEG-LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE----SINLSFT 334 (448)
Q Consensus 260 ~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~----~L~l~~~ 334 (448)
++|.+.......+..+++|+.|+++++.+.... +..+..+++|+.|++++|.+....+..+..+++|+ .|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 666665443334566666777777666665432 45566666777777777666654444443333343 6666666
Q ss_pred CCChHHHHHHhCCCCCcEeEccCCCCChhhHHHhhCCCCCCEEEcCCCCCC
Q 013171 335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385 (448)
Q Consensus 335 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~ 385 (448)
.+....+..+. ..+|+.|++++|.++......+..+++|+.|++++|++.
T Consensus 188 ~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 188 PMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp CCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred cccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 66554333332 236677777766666554444566666777777666655
No 83
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.84 E-value=5e-21 Score=167.43 Aligned_cols=202 Identities=22% Similarity=0.207 Sum_probs=150.2
Q ss_pred CccEEEecCCCCChHHHHhccCCCCCCeEecCCCCCchhHHHHHhcCCCCCEEEccCccCChhhHHhhhcCCCCcEEEcc
Q 013171 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 260 (448)
Q Consensus 181 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 260 (448)
..+.++++++.++.. +..+ .++++.|+++++.+....+..+..+++|++|++++|.+.......+..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~i-p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAI-PSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSSC-CSCC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCcc-CCCC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 456777777776642 2222 2568888888887776555567778888888888888776555566778888888888
Q ss_pred CCCcChhHHHHhhCCCCCcEEeccCCccCcchhhhhhCCCCCCEeeccCCCCCcchhhhhcCCCCCCEEeccCCCCChHH
Q 013171 261 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 340 (448)
Q Consensus 261 ~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 340 (448)
+|.+....+..+..+++|+.|+++++.+....+..+..+++|+.|++++|.+.......+..+++|+.|++++|.+....
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence 88777655556677888888888888777666666777888888888888877766666777888888888888777766
Q ss_pred HHHHhCCCCCcEeEccCCCCChhhHHHhhCCCCCCEEEcCCCCCC
Q 013171 341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385 (448)
Q Consensus 341 ~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~ 385 (448)
+..+..+++|+.|++++|.++......+..+++|+.|++++|++.
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 666777888888888888887765556677888888888887654
No 84
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.84 E-value=2.2e-21 Score=169.88 Aligned_cols=189 Identities=22% Similarity=0.177 Sum_probs=110.0
Q ss_pred HhcCCCCCEEEccCccCChhhHHhhhcCCCCcEEEccCCCcChhHHHHhhCCCCCcEEeccCCccCcchhhhhhCCCCCC
Q 013171 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 303 (448)
Q Consensus 224 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~ 303 (448)
+..+++|+.|++++|.+... ..+..+++|++|++++|.+++..+..+..+++|++|++++|.+....+..+..+++|+
T Consensus 59 l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 136 (272)
T 3rfs_A 59 IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT 136 (272)
T ss_dssp GGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCC
Confidence 34445555555555554432 2344555555555555555544333445555666666666655544444455566666
Q ss_pred EeeccCCCCCcchhhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEccCCCCChhhHHHhhCCCCCCEEEcCCCC
Q 013171 304 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 383 (448)
Q Consensus 304 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~ 383 (448)
.|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|+
T Consensus 137 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCC
Confidence 66666666655444445566666666666666665544455566667777776666666545555666777777777776
Q ss_pred CChHHHHhhhCCCCCCEEeeCCCCCChhHHHhhhcCCC
Q 013171 384 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 421 (448)
Q Consensus 384 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 421 (448)
+.. .++.|+.+++..|.+.+.+|..++.++.
T Consensus 217 ~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 217 WDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp BCC-------CTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred ccc-------cCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 543 3566777777766666666655554443
No 85
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.83 E-value=2e-20 Score=163.78 Aligned_cols=196 Identities=22% Similarity=0.219 Sum_probs=162.5
Q ss_pred HhcCCCCCEEEccCccCChhhHHhhhcCCCCcEEEccCCCcChhHHHHhhCCCCCcEEeccCCccCcchhhhhhCCCCCC
Q 013171 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 303 (448)
Q Consensus 224 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~ 303 (448)
...+++|+.|+++++.+... ..+..+++|+.|++++|.+.+. ..+..+++|++|++++|.+....+..+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 34678899999999887653 3577899999999999988763 3678899999999999988877777788899999
Q ss_pred EeeccCCCCCcchhhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEccCCCCChhhHHHhhCCCCCCEEEcCCCC
Q 013171 304 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 383 (448)
Q Consensus 304 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~ 383 (448)
.|++.+|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.++......+..+++|+.|++++|.
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence 99999999887777778888999999999998887766667888999999999999887766667888999999999999
Q ss_pred CChHHHHhhhCCCCCCEEeeCCCCCChhHHHhhhcCCCCCeecccCC
Q 013171 384 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430 (448)
Q Consensus 384 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~ 430 (448)
+.+..+..+..+++|+.|++++|.+... ++.|+.+++++|
T Consensus 193 l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n 232 (272)
T 3rfs_A 193 LKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWIN 232 (272)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHH
T ss_pred CCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHH
Confidence 9887777788899999999999987643 566676666655
No 86
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.83 E-value=1.1e-19 Score=161.77 Aligned_cols=194 Identities=30% Similarity=0.398 Sum_probs=150.4
Q ss_pred CCCCCCeEecCCCCCchhHHHHHhcCCCCCEEEccCccCChhhHHhhhcCCCCcEEEccCCCcChhHHHHhhCCCCCcEE
Q 013171 202 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281 (448)
Q Consensus 202 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l 281 (448)
.+++|++|++.++.+... +.+..+++|+.|++++|.+....+ +..+++|+.|++++|.+.+. ..+..+++|+.|
T Consensus 39 ~l~~L~~L~l~~~~i~~l--~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L 112 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTL 112 (308)
T ss_dssp HHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEE
T ss_pred HcCCcCEEEeeCCCccCc--hhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEE
Confidence 457788888888877653 257788889999998888876544 77888899999988887753 357788888888
Q ss_pred eccCCccCcchhhhhhCCCCCCEeeccCCCCCcchhhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEccCCCCC
Q 013171 282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 361 (448)
Q Consensus 282 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 361 (448)
++++|.+.... .+..+++|+.|++++|.+....+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.++
T Consensus 113 ~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 113 DLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS 186 (308)
T ss_dssp ECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred ECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccC
Confidence 88888876543 37778888888888888776443 6778888888888888776543 777888888888888887
Q ss_pred hhhHHHhhCCCCCCEEEcCCCCCChHHHHhhhCCCCCCEEeeCCCCCChh
Q 013171 362 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 411 (448)
Q Consensus 362 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 411 (448)
+... +..+++|+.|++++|++.+.. .+..+++|+.|++++|+++..
T Consensus 187 ~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 187 DISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp CCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECC
T ss_pred cChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecC
Confidence 6533 677888888888888888754 377788888888888887653
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.81 E-value=3.2e-20 Score=165.81 Aligned_cols=203 Identities=17% Similarity=0.091 Sum_probs=151.8
Q ss_pred CCCCCEEEccCccCChhhHHhh--hcCCCCcEEEccCCCcChhH----HHHhhCCCCCcEEeccCCccCcchhhhhhCCC
Q 013171 227 LGSLFYLNLNRCQLSDDGCEKF--SKIGSLKVLNLGFNEITDEC----LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300 (448)
Q Consensus 227 ~~~L~~L~l~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~l~l~~~~~~~~~~~~l~~~~ 300 (448)
+++|++|++++|.+....+..+ ..+++|++|++++|.+++.. ...+..+++|++|++++|.+....+..++.++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 4667888887777766555555 66778888888887776421 13345678889999988888777777788888
Q ss_pred CCCEeeccCCCCCcch----hhhhcCCCCCCEEeccCCCCChHHH--H-HHhCCCCCcEeEccCCCCChhhHHHhhCC--
Q 013171 301 NLKCLELSDTQVGSSG----LRHLSGLTNLESINLSFTGISDGSL--R-KLAGLSSLKSLNLDARQITDTGLAALTSL-- 371 (448)
Q Consensus 301 ~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~~~--~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~~-- 371 (448)
+|+.|++++|.+.... ...+..+++|++|++++|.++.... . .+..+++|++|++++|.+.+..+..+..+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 249 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW 249 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence 9999999998765421 1223577899999999998875332 2 34678999999999999988655555554
Q ss_pred -CCCCEEEcCCCCCChHHHHhhhCCCCCCEEeeCCCCCChhHHHhhhcCCCCCeecccCCCCCCH
Q 013171 372 -TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 435 (448)
Q Consensus 372 -~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~l~~ 435 (448)
++|+.|++++|+++.. +..+ +++|+.|++++|++++. + .+..+++|+.|++++| .+++
T Consensus 250 ~~~L~~L~Ls~N~l~~l-p~~~--~~~L~~L~Ls~N~l~~~-~-~~~~l~~L~~L~L~~N-~l~~ 308 (310)
T 4glp_A 250 SSALNSLNLSFAGLEQV-PKGL--PAKLRVLDLSSNRLNRA-P-QPDELPEVDNLTLDGN-PFLV 308 (310)
T ss_dssp CTTCCCEECCSSCCCSC-CSCC--CSCCSCEECCSCCCCSC-C-CTTSCCCCSCEECSST-TTSC
T ss_pred cCcCCEEECCCCCCCch-hhhh--cCCCCEEECCCCcCCCC-c-hhhhCCCccEEECcCC-CCCC
Confidence 7999999999999854 5544 48999999999999875 2 2678899999999999 5554
No 88
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.81 E-value=1.1e-20 Score=162.32 Aligned_cols=198 Identities=15% Similarity=0.122 Sum_probs=123.4
Q ss_pred CCCEEEccCccCChhhHHhhhcCCCCcEEEccCCC-cChhHHHHhhCCCCCcEEeccC-CccCcchhhhhhCCCCCCEee
Q 013171 229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVHLKGLTNLESLNLDS-CGIGDEGLVNLTGLCNLKCLE 306 (448)
Q Consensus 229 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~l~l~~-~~~~~~~~~~l~~~~~L~~L~ 306 (448)
+++.|++++|.+....+..+..+++|+.|++++|. ++...+..+..+++|+.|++++ +.+....+..|..+++|+.|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 45555555555544444445555555555555554 4443333455566666666665 555554445556666666666
Q ss_pred ccCCCCCcchhhhhcCCCCCC---EEeccCC-CCChHHHHHHhCCCCCc-EeEccCCCCChhhHHHhhCCCCCCEEEcCC
Q 013171 307 LSDTQVGSSGLRHLSGLTNLE---SINLSFT-GISDGSLRKLAGLSSLK-SLNLDARQITDTGLAALTSLTGLTHLDLFG 381 (448)
Q Consensus 307 l~~~~~~~~~~~~l~~~~~L~---~L~l~~~-~~~~~~~~~~~~~~~L~-~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~ 381 (448)
+.+|.+.... . +..+++|+ .|++++| .+....+..+..+++|+ .|++++|.++......+.. ++|+.|++++
T Consensus 112 l~~n~l~~lp-~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~ 188 (239)
T 2xwt_C 112 IFNTGLKMFP-D-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK 188 (239)
T ss_dssp EEEECCCSCC-C-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred CCCCCCcccc-c-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence 6666665422 2 55556666 7777777 66665555666777777 7777777777543334434 6788888888
Q ss_pred CC-CChHHHHhhhCC-CCCCEEeeCCCCCChhHHHhhhcCCCCCeecccCCCC
Q 013171 382 AR-ITDSGAAYLRNF-KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 432 (448)
Q Consensus 382 ~~-~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~ 432 (448)
|+ ++...+..+..+ ++|+.|++++|+++...+. .+++|+.|++++++.
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNTWT 238 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC--
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCccC
Confidence 84 777666667777 8888888888887765332 467888888887754
No 89
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.81 E-value=2.7e-19 Score=159.33 Aligned_cols=196 Identities=30% Similarity=0.350 Sum_probs=164.7
Q ss_pred CcCCCCccEEEecCCCCChHHHHhccCCCCCCeEecCCCCCchhHHHHHhcCCCCCEEEccCccCChhhHHhhhcCCCCc
Q 013171 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255 (448)
Q Consensus 176 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 255 (448)
...+++|+.|+++++.+... ..+..+++|++|++++|.+....+ +..+++|+.|++++|.+... ..+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l--~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCC
T ss_pred HHHcCCcCEEEeeCCCccCc--hhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCC
Confidence 34578899999999988753 257889999999999998877544 88999999999999998764 3688899999
Q ss_pred EEEccCCCcChhHHHHhhCCCCCcEEeccCCccCcchhhhhhCCCCCCEeeccCCCCCcchhhhhcCCCCCCEEeccCCC
Q 013171 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 335 (448)
Q Consensus 256 ~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 335 (448)
.|++++|.+++.. .+..+++|+.|++++|.+....+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.
T Consensus 111 ~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 111 TLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNK 184 (308)
T ss_dssp EEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCc
Confidence 9999999987643 38889999999999998875543 7789999999999998887544 7889999999999998
Q ss_pred CChHHHHHHhCCCCCcEeEccCCCCChhhHHHhhCCCCCCEEEcCCCCCChH
Q 013171 336 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 387 (448)
Q Consensus 336 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~ 387 (448)
+.+..+ +..+++|+.|++++|.+.+.. .+..+++|+.|++++|+++..
T Consensus 185 l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 185 ISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp CCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECC
T ss_pred cCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecC
Confidence 887543 788999999999999998764 478899999999999987653
No 90
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.80 E-value=2e-19 Score=158.57 Aligned_cols=204 Identities=20% Similarity=0.184 Sum_probs=170.8
Q ss_pred CcCCCCccEEEecCCCCChHHHHhccCCCCCCeEecCCCCCchhHHHHHhcCCCCCEEEccCccCChhhHHhhhcCCCCc
Q 013171 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255 (448)
Q Consensus 176 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 255 (448)
+..+++++.++++++.++... ..+ .++++.|+++++.+....+..+..+++|+.|++++|.+..... ...+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip-~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALP-PDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCC-SCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred ccccCCccEEECCCCCCCcCC-CCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence 567788999999998887432 222 3689999999999887767788999999999999999876433 26789999
Q ss_pred EEEccCCCcChhHHHHhhCCCCCcEEeccCCccCcchhhhhhCCCCCCEeeccCCCCCcchhhhhcCCCCCCEEeccCCC
Q 013171 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 335 (448)
Q Consensus 256 ~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 335 (448)
.|++++|.++. .+..+..+++|+.|++++|.+....+..|..+++|+.|++++|.+....+..+..+++|+.|++++|.
T Consensus 81 ~L~Ls~N~l~~-l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCCc-CchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 99999998874 34456788999999999999987777788899999999999999988777778889999999999999
Q ss_pred CChHHHHHHhCCCCCcEeEccCCCCChhhHHHhhCCCCCCEEEcCCCCCCh
Q 013171 336 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386 (448)
Q Consensus 336 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~ 386 (448)
+.......+..+++|+.|++++|.++.. +..+...++|+.+++.+|++..
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~~i-p~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLYTI-PKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCCCSEEECCSCCBCC
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCCcc-ChhhcccccCCeEEeCCCCccC
Confidence 9887767778899999999999999865 4555667899999999997763
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.79 E-value=1.1e-19 Score=162.38 Aligned_cols=227 Identities=17% Similarity=0.135 Sum_probs=163.3
Q ss_pred CCCccEEEecCCCCChHHHHh---ccCCCCCCeEecCCCCCchhHHHHH--hcCCCCCEEEccCccCChhhH----Hhhh
Q 013171 179 LTNLKSLQISCSKVTDSGIAY---LKGLQKLTLLNLEGCPVTAACLDSL--SALGSLFYLNLNRCQLSDDGC----EKFS 249 (448)
Q Consensus 179 ~~~L~~L~l~~~~~~~~~~~~---l~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~----~~l~ 249 (448)
...++.+.+....+....... ...+++|++|++++|.+....+..+ ..+++|++|++++|.+....+ ..+.
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 345677788777766433222 2334668888888887776555555 678888888888888775322 3345
Q ss_pred cCCCCcEEEccCCCcChhHHHHhhCCCCCcEEeccCCccCcch----hhhhhCCCCCCEeeccCCCCCcchh--h-hhcC
Q 013171 250 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG----LVNLTGLCNLKCLELSDTQVGSSGL--R-HLSG 322 (448)
Q Consensus 250 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~~~--~-~l~~ 322 (448)
.+++|++|++++|.+....+..+..+++|++|++++|.+.... ...+..+++|+.|++++|.++.... . .+..
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA 222 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence 6888899999888887766667778888999999888765321 1223567889999999988864322 1 2466
Q ss_pred CCCCCEEeccCCCCChHHHHHHhCC---CCCcEeEccCCCCChhhHHHhhCCCCCCEEEcCCCCCChHHHHhhhCCCCCC
Q 013171 323 LTNLESINLSFTGISDGSLRKLAGL---SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 399 (448)
Q Consensus 323 ~~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 399 (448)
+++|++|++++|.+.+..+..+..+ ++|++|++++|.++.. +..+ +++|+.|++++|++++. + .+..+++|+
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~l-p~~~--~~~L~~L~Ls~N~l~~~-~-~~~~l~~L~ 297 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQV-PKGL--PAKLRVLDLSSNRLNRA-P-QPDELPEVD 297 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSC-CSCC--CSCCSCEECCSCCCCSC-C-CTTSCCCCS
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCch-hhhh--cCCCCEEECCCCcCCCC-c-hhhhCCCcc
Confidence 7889999999998877655555554 6899999999988854 3333 37899999999998874 2 257789999
Q ss_pred EEeeCCCCCCh
Q 013171 400 SLEICGGGLTD 410 (448)
Q Consensus 400 ~L~l~~~~~~~ 410 (448)
.|++++|++++
T Consensus 298 ~L~L~~N~l~~ 308 (310)
T 4glp_A 298 NLTLDGNPFLV 308 (310)
T ss_dssp CEECSSTTTSC
T ss_pred EEECcCCCCCC
Confidence 99999998865
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.79 E-value=2.4e-19 Score=154.93 Aligned_cols=181 Identities=20% Similarity=0.218 Sum_probs=137.7
Q ss_pred CCCCEEEccCccCChhhHHhhhcCCCCcEEEccCCCcChhHHHHhhCCCCCcEEeccCCccCcchhhhhhCCCCCCEeec
Q 013171 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 307 (448)
Q Consensus 228 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l 307 (448)
.+.+.++++++.+.... ..+ .++++.|+++++.+.+..+..+..+++|+.|+++++.+....+..+..+++|+.|++
T Consensus 14 ~~~~~l~~~~~~l~~~p-~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVP-SGI--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCSSCC-SCC--CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCccccC-CCC--CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 45677888887766432 222 257888888888877766666778888888888888887766666778888888888
Q ss_pred cCCCCCcchhhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEccCCCCChhhHHHhhCCCCCCEEEcCCCCCChH
Q 013171 308 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 387 (448)
Q Consensus 308 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~ 387 (448)
++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.++......+..+++|+.|++++|++.+.
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 88888776666677788888888888887776666667788888888888888776555677788888888888888776
Q ss_pred HHHhhhCCCCCCEEeeCCCCCChh
Q 013171 388 GAAYLRNFKNLRSLEICGGGLTDA 411 (448)
Q Consensus 388 ~~~~~~~~~~L~~L~l~~~~~~~~ 411 (448)
.+..+..+++|+.|++++|++...
T Consensus 171 ~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CHHHHhCCCCCCEEEeeCCceeCC
Confidence 666777788888888888877643
No 93
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.78 E-value=1e-19 Score=156.15 Aligned_cols=196 Identities=15% Similarity=0.180 Sum_probs=107.9
Q ss_pred CccEEEecCCCCChHHHHhccCCCCCCeEecCCCC-CchhHHHHHhcCCCCCEEEccC-ccCChhhHHhhhcCCCCcEEE
Q 013171 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLNR-CQLSDDGCEKFSKIGSLKVLN 258 (448)
Q Consensus 181 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~ 258 (448)
++++|+++++.++...+..+..+++|++|+++++. +....+..+..+++|++|++++ |.+....+..+..+++|+.|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 66777777776665544455566666666666664 4443333455555666666655 555444334444555555555
Q ss_pred ccCCCcChhHHHHhhCCCCCcEEeccCCccCcchhhhhhCCCCCC---EeeccCC-CCCcchhhhhcCCCCCC-EEeccC
Q 013171 259 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK---CLELSDT-QVGSSGLRHLSGLTNLE-SINLSF 333 (448)
Q Consensus 259 l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~---~L~l~~~-~~~~~~~~~l~~~~~L~-~L~l~~ 333 (448)
+++|.+++ .. .+..+++|+ .|++++| .+.......+..+++|+ .|++++
T Consensus 112 l~~n~l~~------------------------lp--~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~ 165 (239)
T 2xwt_C 112 IFNTGLKM------------------------FP--DLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN 165 (239)
T ss_dssp EEEECCCS------------------------CC--CCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCS
T ss_pred CCCCCCcc------------------------cc--ccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCC
Confidence 55554433 11 133344444 5555555 55444444455555666 666666
Q ss_pred CCCChHHHHHHhCCCCCcEeEccCCC-CChhhHHHhhCC-CCCCEEEcCCCCCChHHHHhhhCCCCCCEEeeCCC
Q 013171 334 TGISDGSLRKLAGLSSLKSLNLDARQ-ITDTGLAALTSL-TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 406 (448)
Q Consensus 334 ~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 406 (448)
|.+.......+.. ++|+.|++++|. ++......+..+ ++|+.|++++|+++...+. .+++|+.|++.++
T Consensus 166 n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 166 NGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp CCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred CCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 6555433333333 566666666663 665544555666 6777777777766654322 4567777776664
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.76 E-value=1.3e-18 Score=150.43 Aligned_cols=181 Identities=21% Similarity=0.252 Sum_probs=149.5
Q ss_pred CCCCeEecCCCCCchhHHHHHhcCCCCCEEEccCccCChhhHHhhhcCCCCcEEEccCCCcChhHHHHhhCCCCCcEEec
Q 013171 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283 (448)
Q Consensus 204 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l 283 (448)
...+.++++++.+... +..+ .++++.|++++|.+....+..+..+++|+.|++++|.+++..+..+..+++|+.|++
T Consensus 14 ~~~~~l~~~~~~l~~~-p~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSV-PSGI--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCSSC-CSCC--CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCcccc-CCCC--CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 4567788888776653 2222 368999999999988877777888999999999999888766667888899999999
Q ss_pred cCCccCcchhhhhhCCCCCCEeeccCCCCCcchhhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEccCCCCChh
Q 013171 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 363 (448)
Q Consensus 284 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 363 (448)
+++.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.++..
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 99988877777788889999999999988877666678889999999999988877666788889999999999998877
Q ss_pred hHHHhhCCCCCCEEEcCCCCCChH
Q 013171 364 GLAALTSLTGLTHLDLFGARITDS 387 (448)
Q Consensus 364 ~~~~l~~~~~L~~L~l~~~~~~~~ 387 (448)
....+..+++|+.|++++|++...
T Consensus 171 ~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CHHHHhCCCCCCEEEeeCCceeCC
Confidence 666788889999999999988754
No 95
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.72 E-value=2.5e-17 Score=145.27 Aligned_cols=168 Identities=31% Similarity=0.392 Sum_probs=73.7
Q ss_pred CCCCCeEecCCCCCchhHHHHHhcCCCCCEEEccCccCChhhHHhhhcCCCCcEEEccCCCcChhHHHHhhCCCCCcEEe
Q 013171 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282 (448)
Q Consensus 203 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~ 282 (448)
+++|+.|+++++.+... +.+..+++|+.|++++|.+....+ +..+++|+.|++++|.+++. ..+..+++|+.|+
T Consensus 45 l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~ 118 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLS 118 (291)
T ss_dssp HHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEEE
T ss_pred cCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCEEE
Confidence 34455555555544332 124445555555555555444322 44455555555555544431 1244444555555
Q ss_pred ccCCccCcchhhhhhCCCCCCEeeccCCCCCcchhhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEccCCCCCh
Q 013171 283 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362 (448)
Q Consensus 283 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 362 (448)
+++|.+... ..+..+++|+.|++++|.+... ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+++
T Consensus 119 L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~ 192 (291)
T 1h6t_A 119 LEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 192 (291)
T ss_dssp CTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred CCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC
Confidence 544444332 2333444444444444444332 233344444444444444443322 3344444444444444443
Q ss_pred hhHHHhhCCCCCCEEEcCCCCC
Q 013171 363 TGLAALTSLTGLTHLDLFGARI 384 (448)
Q Consensus 363 ~~~~~l~~~~~L~~L~l~~~~~ 384 (448)
. ..+..+++|+.|++++|++
T Consensus 193 l--~~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 193 L--RALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp C--GGGTTCTTCSEEEEEEEEE
T ss_pred C--hhhccCCCCCEEECcCCcc
Confidence 2 1233444444444444433
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.71 E-value=6.2e-17 Score=142.71 Aligned_cols=173 Identities=30% Similarity=0.318 Sum_probs=143.5
Q ss_pred hcCCCCCEEEccCccCChhhHHhhhcCCCCcEEEccCCCcChhHHHHhhCCCCCcEEeccCCccCcchhhhhhCCCCCCE
Q 013171 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 304 (448)
Q Consensus 225 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~ 304 (448)
..+++|+.|+++++.+... ..+..+++|+.|++++|.+++..+ +..+++|+.|++++|.+... ..+..+++|+.
T Consensus 43 ~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~ 116 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKS 116 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCE
T ss_pred hhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCE
Confidence 4578899999999988764 347788999999999998886544 88899999999999988653 34788899999
Q ss_pred eeccCCCCCcchhhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEccCCCCChhhHHHhhCCCCCCEEEcCCCCC
Q 013171 305 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 384 (448)
Q Consensus 305 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~ 384 (448)
|++++|.+.+. ..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+++..+ +..+++|+.|++++|.+
T Consensus 117 L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 117 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 190 (291)
T ss_dssp EECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcC
Confidence 99999988764 4577889999999999988875 567788999999999999887644 78899999999999988
Q ss_pred ChHHHHhhhCCCCCCEEeeCCCCCChh
Q 013171 385 TDSGAAYLRNFKNLRSLEICGGGLTDA 411 (448)
Q Consensus 385 ~~~~~~~~~~~~~L~~L~l~~~~~~~~ 411 (448)
++. ..+..+++|+.|++++|.+...
T Consensus 191 ~~l--~~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 191 SDL--RALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp CBC--GGGTTCTTCSEEEEEEEEEECC
T ss_pred CCC--hhhccCCCCCEEECcCCcccCC
Confidence 875 2478899999999999887654
No 97
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.68 E-value=1.5e-16 Score=131.87 Aligned_cols=146 Identities=25% Similarity=0.359 Sum_probs=75.4
Q ss_pred CCcEEeccCCccCcchhhhhhCCCCCCEeeccCCCCCcchhhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEcc
Q 013171 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356 (448)
Q Consensus 277 ~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 356 (448)
+|+.++++++.+.... .+..+++|+.|++.+|.+.. +..+..+++|++|++++|.+.+..+..++.+++|+.|+++
T Consensus 45 ~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 45 SLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp TCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred CccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 4444444444443211 23444455555555553332 1234445555555555555554444445555555555555
Q ss_pred CCCCChhhHHHhhCCCCCCEEEcCCCC-CChHHHHhhhCCCCCCEEeeCCCCCChhHHHhhhcCCCCCeecccCC
Q 013171 357 ARQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430 (448)
Q Consensus 357 ~~~l~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~ 430 (448)
+|.+++..+..+..+++|+.|++++|. +... + .+..+++|+.|++++|.+.+.. .+..+++|+.|++++|
T Consensus 121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDI-M-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp SSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-G-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC
T ss_pred CCccCcHhHHHHhhCCCCCEEEccCCCCcccc-H-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCc
Confidence 555555445555555666666666655 4432 2 3555666666666666655532 4555666666666666
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.68 E-value=2.8e-17 Score=137.67 Aligned_cols=163 Identities=19% Similarity=0.121 Sum_probs=100.3
Q ss_pred CCCcEEEccCCCcChhHHHHhhCCCCCcEEeccCCccCcchhhhhhCCCCCCEeeccCCCCCcchhhhhcCCCCCCEEec
Q 013171 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331 (448)
Q Consensus 252 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 331 (448)
++|+.|+++++.++......+..+++|+.|+++++.+.......+..+++|+.|++++|.+.......+..+++|+.|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 34555555555554433334455566666666666555444444555666666666666666544444566666777777
Q ss_pred cCCCCChHHHHHHhCCCCCcEeEccCCCCChhhHHHhhCCCCCCEEEcCCCCCChHHHHhhhCCCCCCEEeeCCCCCChh
Q 013171 332 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 411 (448)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 411 (448)
++|.+....+..+..+++|+.|++++|.++......+..+++|+.|++++|++.. .+++|+.|++..|.+++.
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ 180 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGV 180 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTT
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCce
Confidence 6666665544555666777777777776665544456667777777777776543 356777777777777766
Q ss_pred HHHhhhcCCC
Q 013171 412 GVKHIKDLSS 421 (448)
Q Consensus 412 ~~~~l~~~~~ 421 (448)
+|..++.++.
T Consensus 181 ip~~~~~l~~ 190 (208)
T 2o6s_A 181 VRNSAGSVAP 190 (208)
T ss_dssp BBCTTSSBCT
T ss_pred eeccCccccC
Confidence 6666655543
No 99
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.68 E-value=2.4e-16 Score=130.65 Aligned_cols=151 Identities=25% Similarity=0.358 Sum_probs=97.3
Q ss_pred CCCcEEEccCCCcChhHHHHhhCCCCCcEEeccCCccCcchhhhhhCCCCCCEeeccCCCCCcchhhhhcCCCCCCEEec
Q 013171 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331 (448)
Q Consensus 252 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 331 (448)
++|+.|+++++.+.+.. .+..+++|+.|++++|.+.. +..+..+++|+.|++++|.+....+..+..+++|+.|++
T Consensus 44 ~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 44 NSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred CCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 34555555555444211 34555566666666654432 234556677777777777666555566667777777777
Q ss_pred cCCCCChHHHHHHhCCCCCcEeEccCCC-CChhhHHHhhCCCCCCEEEcCCCCCChHHHHhhhCCCCCCEEeeCCCCCCh
Q 013171 332 SFTGISDGSLRKLAGLSSLKSLNLDARQ-ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 410 (448)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 410 (448)
++|.+.+..+..+..+++|++|++++|. ++.. ..+..+++|+.|++++|++.+.. .+..+++|+.|++++|++.+
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~--~~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDI--MPLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC--GGGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC----
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCcccc--HhhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcccCC
Confidence 7777776666777777788888887776 5554 25677788888888888777642 56778888888888887654
No 100
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.68 E-value=6.6e-17 Score=136.28 Aligned_cols=133 Identities=19% Similarity=0.277 Sum_probs=76.3
Q ss_pred CCCcEEeccCCccCcchhhhhhCCCCCCEeeccCCCCCcchhhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEc
Q 013171 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355 (448)
Q Consensus 276 ~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 355 (448)
++++.|+++++.+....+..|..+++|+.|++++|.+....+..+..+++|++|++++|.+.......+..+++|+.|++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 45666666666655544445555666666666666665554555555666666666666555544444555556666666
Q ss_pred cCCCCChhhHHHhhCCCCCCEEEcCCCCCChHHHHhhhCCCCCCEEeeCCCCC
Q 013171 356 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 408 (448)
Q Consensus 356 ~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 408 (448)
++|.++...+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 66655555445555555566666666555554444455555555555555554
No 101
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.67 E-value=1.7e-16 Score=153.29 Aligned_cols=172 Identities=31% Similarity=0.387 Sum_probs=105.4
Q ss_pred cCCCCCCeEecCCCCCchhHHHHHhcCCCCCEEEccCccCChhhHHhhhcCCCCcEEEccCCCcChhHHHHhhCCCCCcE
Q 013171 201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280 (448)
Q Consensus 201 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 280 (448)
..+++|+.|+++++.+... +.+..+++|+.|++++|.+....+ +..+++|+.|++++|.+.+. ..+..+++|+.
T Consensus 40 ~~L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~ 113 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLKS 113 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTCCE
T ss_pred hcCCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCCCE
Confidence 3456677777777665543 246667777777777777665433 66677777777777666542 24566666777
Q ss_pred EeccCCccCcchhhhhhCCCCCCEeeccCCCCCcchhhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEccCCCC
Q 013171 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360 (448)
Q Consensus 281 l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l 360 (448)
|++++|.+... ..+..+++|+.|++++|.+... ..+..+++|+.|+|++|.+.+..+ +..+++|+.|++++|.+
T Consensus 114 L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i 187 (605)
T 1m9s_A 114 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 187 (605)
T ss_dssp EECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCC
Confidence 77766666542 3355666666666666666543 345566666666666666655433 55666666666666666
Q ss_pred ChhhHHHhhCCCCCCEEEcCCCCCCh
Q 013171 361 TDTGLAALTSLTGLTHLDLFGARITD 386 (448)
Q Consensus 361 ~~~~~~~l~~~~~L~~L~l~~~~~~~ 386 (448)
.+. ..+..+++|+.|++++|++.+
T Consensus 188 ~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 188 SDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred CCC--hHHccCCCCCEEEccCCcCcC
Confidence 553 345566666666666665544
No 102
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.67 E-value=9.9e-17 Score=144.35 Aligned_cols=293 Identities=16% Similarity=0.119 Sum_probs=144.0
Q ss_pred CCCCCCeEeccCCcccChhHHHhhcC-CCCCCEEeCCCCccccHHHHHHHhCCCCCcEEecCCccccccchhhccC----
Q 013171 79 DCSNLQSLDFNFCIQISDGGLEHLRG-LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG---- 153 (448)
Q Consensus 79 ~~~~L~~L~l~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~---- 153 (448)
..++++.|.+++ .+.......+.. +++|++|+++++.+...... -+.++.++.+....+ .....+|..
T Consensus 23 ~~~~l~~L~l~g--~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~--~~~~~~~~~~~~~~~---~I~~~aF~~~~~~ 95 (329)
T 3sb4_A 23 EANSITHLTLTG--KLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGK--AGTYPNGKFYIYMAN---FVPAYAFSNVVNG 95 (329)
T ss_dssp HHHHCSEEEEEE--EECHHHHHHHHHSCTTCCEEEEEEEEECCEEES--SSSSGGGCCEEECTT---EECTTTTEEEETT
T ss_pred hhCceeEEEEec--cccHHHHHHHHHhhccCeEEecCcceeEEecCc--ccccccccccccccc---ccCHHHhcccccc
Confidence 355778888877 355555566655 67788888887764300000 011122233333322 112233445
Q ss_pred ----CCCCcEEeccCCCccCccccccCcCCCCccEEEecCCCCChHHHHhccCCCCCCeEecCCCCCchhHHHHHhcCCC
Q 013171 154 ----LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229 (448)
Q Consensus 154 ----l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 229 (448)
|++|+.+++.+ .+......+|.+|++|+.+++..+.+.......|..+.++..+........ ...
T Consensus 96 ~~~g~~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~-------~~~-- 164 (329)
T 3sb4_A 96 VTKGKQTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAY-------RFK-- 164 (329)
T ss_dssp EEEECTTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHH-------HTS--
T ss_pred cccccCCCcEEECCc--cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhh-------hcc--
Confidence 66777777665 344455556666677777777666655544555555555554444331100 000
Q ss_pred CCEEEccCccCChhhHHhhhcCCCCc-EEEccCCC-cChhHHHHhhCCCCCcEEeccCCccCcchhhhhh-CCCCCCEee
Q 013171 230 LFYLNLNRCQLSDDGCEKFSKIGSLK-VLNLGFNE-ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT-GLCNLKCLE 306 (448)
Q Consensus 230 L~~L~l~~~~~~~~~~~~l~~~~~L~-~L~l~~~~-~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~l~-~~~~L~~L~ 306 (448)
......++..+..|+ .+.+.... +.......-....+++.+.+.+. +.......+. .+++|+.++
T Consensus 165 -----------~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~ 232 (329)
T 3sb4_A 165 -----------NRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGK-LDNADFKLIRDYMPNLVSLD 232 (329)
T ss_dssp -----------TTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEE
T ss_pred -----------ccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeee-ecHHHHHHHHHhcCCCeEEE
Confidence 000011122233333 22222111 00000000012233444444332 1111222222 255666666
Q ss_pred ccCCCCCcchhhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCc-EeEccCCCCChhhHHHhhCCCCCCEEEcCCCCCC
Q 013171 307 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK-SLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385 (448)
Q Consensus 307 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~-~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~ 385 (448)
+.+|.+.......|..|++|+.+.+..+ +......+|.++++|+ .+.+.+ .++.....+|.+|++|+.+++.++.++
T Consensus 233 L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~ 310 (329)
T 3sb4_A 233 ISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT 310 (329)
T ss_dssp CTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC
T ss_pred CCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC
Confidence 6665555555555566666666666554 4444555566666666 666655 555555566666777777777666666
Q ss_pred hHHHHhhhCCCCCCEEee
Q 013171 386 DSGAAYLRNFKNLRSLEI 403 (448)
Q Consensus 386 ~~~~~~~~~~~~L~~L~l 403 (448)
.+...+|.+|++|+.++.
T Consensus 311 ~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 311 TLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EECTTTTCTTCCCCEEEC
T ss_pred ccchhhhcCCcchhhhcc
Confidence 666666777777776653
No 103
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.66 E-value=1.8e-16 Score=142.73 Aligned_cols=283 Identities=15% Similarity=0.094 Sum_probs=160.3
Q ss_pred CCccEEEcccCCCChHHhHhccC-CCCCCeEeccCCcccC--hhHHHhhcCCCCCCEEeCCCCccccHHHHHHHhC----
Q 013171 57 SSLLSVDLSGSDVTDSGLIHLKD-CSNLQSLDFNFCIQIS--DGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAG---- 129 (448)
Q Consensus 57 ~~l~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~--~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~---- 129 (448)
.++++|.++++ +.......+.. +++|++|+|+++ .+. .... ..++.++.+.+..+.+ ...+|.+
T Consensus 25 ~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n-~i~~~~~~~---~~~~~~~~~~~~~~~I----~~~aF~~~~~~ 95 (329)
T 3sb4_A 25 NSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNA-EIKMYSGKA---GTYPNGKFYIYMANFV----PAYAFSNVVNG 95 (329)
T ss_dssp HHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEE-EECCEEESS---SSSGGGCCEEECTTEE----CTTTTEEEETT
T ss_pred CceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcc-eeEEecCcc---cccccccccccccccc----CHHHhcccccc
Confidence 36777777753 33333344444 677888888775 333 1111 1122234444443321 1244555
Q ss_pred ----CCCCcEEecCCccccccchhhccCCCCCcEEeccCCCccCccccccCcCCCCccEEEecCCC----CChHHHHhcc
Q 013171 130 ----LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK----VTDSGIAYLK 201 (448)
Q Consensus 130 ----l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~----~~~~~~~~l~ 201 (448)
|++|+.|++.. ........+|..|++|+.+++.++ .+.......|..+.++..+...... ........+.
T Consensus 96 ~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n-~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~ 173 (329)
T 3sb4_A 96 VTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKK-TAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFI 173 (329)
T ss_dssp EEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCS-SCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEE
T ss_pred cccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCC-CccccchhhhcCCCceEEecCcchhhhhccccccccccc
Confidence 67777777766 444444455667777777777653 3333445556665555555443311 1111122344
Q ss_pred CCCCCC-eEecCCCCCchhHHHHHh---cCCCCCEEEccCccCChhhHHhh-hcCCCCcEEEccCCCcChhHHHHhhCCC
Q 013171 202 GLQKLT-LLNLEGCPVTAACLDSLS---ALGSLFYLNLNRCQLSDDGCEKF-SKIGSLKVLNLGFNEITDECLVHLKGLT 276 (448)
Q Consensus 202 ~~~~L~-~L~l~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 276 (448)
.+..|+ .+.+....... ...+. ...+++.+.+.+.- .......+ ..+++|+.+++.++.++......|..++
T Consensus 174 ~~~~L~~~i~~~~~~~l~--~~~~~~~~~~~~~~~l~~~~~l-~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~ 250 (329)
T 3sb4_A 174 EGEPLETTIQVGAMGKLE--DEIMKAGLQPRDINFLTIEGKL-DNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKK 250 (329)
T ss_dssp ESCCCEEEEEECTTCCHH--HHHHHTTCCGGGCSEEEEEECC-CHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCT
T ss_pred cccccceeEEecCCCcHH--HHHhhcccCccccceEEEeeee-cHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCC
Confidence 455555 34443322111 11111 23556666665542 22222222 2367777777777766666566677777
Q ss_pred CCcEEeccCCccCcchhhhhhCCCCCC-EeeccCCCCCcchhhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEc
Q 013171 277 NLESLNLDSCGIGDEGLVNLTGLCNLK-CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355 (448)
Q Consensus 277 ~L~~l~l~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 355 (448)
+|+.+++..+ +...+..+|..+++|+ .+.+.+ .+......+|..|++|+.+++..+.+......+|.++++|+.++.
T Consensus 251 ~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 251 YLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred CCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 8888888765 6666667777788887 888876 566666677778888888888777777777777778888887763
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.66 E-value=4.2e-16 Score=150.47 Aligned_cols=175 Identities=30% Similarity=0.311 Sum_probs=147.5
Q ss_pred HhcCCCCCEEEccCccCChhhHHhhhcCCCCcEEEccCCCcChhHHHHhhCCCCCcEEeccCCccCcchhhhhhCCCCCC
Q 013171 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 303 (448)
Q Consensus 224 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~ 303 (448)
+..+++|+.|+++++.+... ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+... ..+..+++|+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~ 112 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLK 112 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTCC
T ss_pred hhcCCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCCC
Confidence 35678899999999988764 257889999999999998887544 88899999999999988653 3678899999
Q ss_pred EeeccCCCCCcchhhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEccCCCCChhhHHHhhCCCCCCEEEcCCCC
Q 013171 304 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 383 (448)
Q Consensus 304 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~ 383 (448)
.|++++|.+... ..+..+++|+.|+|++|.+... ..+..+++|+.|++++|.+.+..+ +..+++|+.|+|++|.
T Consensus 113 ~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~ 186 (605)
T 1m9s_A 113 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 186 (605)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCC
Confidence 999999988763 4578889999999999988875 567889999999999999987654 8889999999999999
Q ss_pred CChHHHHhhhCCCCCCEEeeCCCCCChhH
Q 013171 384 ITDSGAAYLRNFKNLRSLEICGGGLTDAG 412 (448)
Q Consensus 384 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 412 (448)
+.+. ..+..+++|+.|++++|.+....
T Consensus 187 i~~l--~~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 187 ISDL--RALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp CCBC--GGGTTCTTCSEEECCSEEEECCC
T ss_pred CCCC--hHHccCCCCCEEEccCCcCcCCc
Confidence 9875 45788999999999999887653
No 105
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.66 E-value=2.1e-16 Score=133.21 Aligned_cols=152 Identities=17% Similarity=0.251 Sum_probs=88.1
Q ss_pred cEEEccCCCcChhHHHHhhCCCCCcEEeccCCccCcchh-hhhhCCCCCCEeeccCCCCCcchhhhhcCCCCCCEEeccC
Q 013171 255 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL-VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333 (448)
Q Consensus 255 ~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 333 (448)
+.++++++.++.. +..+ .+.++.|+++++.+....+ ..|..+++|+.|++++|.+....+..+..+++|+.|++++
T Consensus 14 ~~l~~s~n~l~~i-P~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNKI-PEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSSC-CSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcccC-ccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 3566666655432 1111 2345666666666654422 3355666666666666666655555556666666666666
Q ss_pred CCCChHHHHHHhCCCCCcEeEccCCCCChhhHHHhhCCCCCCEEEcCCCCCChHHHHhhhCCCCCCEEeeCCCCCC
Q 013171 334 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 409 (448)
Q Consensus 334 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 409 (448)
|.+....+..+..+++|++|++++|.++...+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 6665555555556666666666666666554555555666666666666666555555556666666666666543
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.65 E-value=3.5e-16 Score=142.55 Aligned_cols=159 Identities=19% Similarity=0.162 Sum_probs=78.0
Q ss_pred CcEEeccCCccCcchhhhhh-CCCCCCEeeccCCCCCcchhhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEcc
Q 013171 278 LESLNLDSCGIGDEGLVNLT-GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356 (448)
Q Consensus 278 L~~l~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 356 (448)
++.|+++++.+.......+. .+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|+++
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 120 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY 120 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECC
Confidence 44444444444433333333 44455555555554444444444445555555555555444433444455555555555
Q ss_pred CCCCChhhHHHhhCCCCCCEEEcCCCCCChHHHHhh---hCCCCCCEEeeCCCCCChhHHHhhhcCCC--CCeecccCCC
Q 013171 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL---RNFKNLRSLEICGGGLTDAGVKHIKDLSS--LTLLNLSQNC 431 (448)
Q Consensus 357 ~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~l~~~~~--L~~l~l~~~~ 431 (448)
+|.+....+..+..+++|+.|++++|.++...+..+ ..+++|+.|++++|.++...+..+..++. ++.|++++||
T Consensus 121 ~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 121 NNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred CCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCC
Confidence 555554444445555555555555555554433333 34555666666665555554445555554 2556666655
Q ss_pred CCCHH
Q 013171 432 NLTDK 436 (448)
Q Consensus 432 ~l~~~ 436 (448)
.-.+.
T Consensus 201 ~~C~C 205 (361)
T 2xot_A 201 LECDC 205 (361)
T ss_dssp EECCH
T ss_pred ccCCc
Confidence 44333
No 107
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.64 E-value=1e-16 Score=148.09 Aligned_cols=335 Identities=15% Similarity=0.120 Sum_probs=205.5
Q ss_pred CChHHhHhccCCCCCCeEeccCCcccChhHHHhhcCCCCCCEEeCCCCccccHHHHHHHhCCCCCcEEecCCccccccch
Q 013171 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGL 148 (448)
Q Consensus 69 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 148 (448)
++.+...+|..|.+|+.+.+.. .++.....+|.+|.+|+.+++..+ +......+|.+|.+|+.+.+... ......
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~--~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~ 133 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPS--TVREIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILLPLM-LKSIGV 133 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCT--TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCCCTT-CCEECT
T ss_pred EeEhHHHHhhCCCCceEEEeCC--CccCcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhcccCc-eeeecc
Confidence 4445556788888888888875 477777778888888888888765 33444567778888888777652 233334
Q ss_pred hhccCCCCCcEEeccCCCccCccccccCcCCCCccEEEecCCCCChHHHHhccCCCCCCeEecCCCCCchhHHHHHhcCC
Q 013171 149 VNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 228 (448)
Q Consensus 149 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 228 (448)
.++..+..++...... .......++.++++|+.+.+..+. .......+.++.+|+.+.+..+ +.......+.++.
T Consensus 134 ~aF~~~~~~~~~~~~~---~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~ 208 (394)
T 4fs7_A 134 EAFKGCDFKEITIPEG---VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECI 208 (394)
T ss_dssp TTTTTCCCSEEECCTT---CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCT
T ss_pred eeeecccccccccCcc---ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhcccc
Confidence 4555554443333322 223344567778888888886442 2234456677788888877654 3333344566777
Q ss_pred CCCEEEccCccCChhhHHhhhcCCCCcEEEccCCCcChhHHHHhhCCCCCcEEeccCCccCcchhhhhhCCCCCCEeecc
Q 013171 229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 308 (448)
Q Consensus 229 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~ 308 (448)
.|+.+.+..+.... .........|+.+.+.... .......+..+..++.+.+..+. .......|..+..++.+...
T Consensus 209 ~L~~i~~~~~~~~i--~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~-~~i~~~~F~~~~~l~~~~~~ 284 (394)
T 4fs7_A 209 LLENMEFPNSLYYL--GDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNK-LRIGGSLFYNCSGLKKVIYG 284 (394)
T ss_dssp TCCBCCCCTTCCEE--CTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTT-CEECSCTTTTCTTCCEEEEC
T ss_pred ccceeecCCCceEe--ehhhcccCCCceEEECCCc-eecccccccccccceeEEcCCCc-ceeeccccccccccceeccC
Confidence 77777665543211 1122234567777665421 21223345667777777776542 23444556667777777665
Q ss_pred CCCCCcchhhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEccCCCCChhhHHHhhCCCCCCEEEcCCCCCChHH
Q 013171 309 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388 (448)
Q Consensus 309 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 388 (448)
...+ ....+..+.+|+.+.+..+ +......+|.++.+|+.+.+.. .++..+..++.+|.+|+.+.+..+ ++.+.
T Consensus 285 ~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~ 358 (394)
T 4fs7_A 285 SVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRKIG 358 (394)
T ss_dssp SSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CCEEC
T ss_pred ceee---ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-ccEeh
Confidence 5432 2234566777887777543 4444456677778888887754 355555566777788888887655 66666
Q ss_pred HHhhhCCCCCCEEeeCCCCCChhHHHhhhcCCCCCee
Q 013171 389 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 425 (448)
Q Consensus 389 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l 425 (448)
..+|.+|++|+.+.+..+ +... ..+|.+|++|+.+
T Consensus 359 ~~aF~~C~~L~~i~lp~~-~~~~-~~~F~~c~~L~~I 393 (394)
T 4fs7_A 359 ANAFQGCINLKKVELPKR-LEQY-RYDFEDTTKFKWI 393 (394)
T ss_dssp TTTBTTCTTCCEEEEEGG-GGGG-GGGBCTTCEEEEE
T ss_pred HHHhhCCCCCCEEEECCC-CEEh-hheecCCCCCcEE
Confidence 677778888888887654 2222 3456677777654
No 108
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.64 E-value=1.3e-16 Score=133.55 Aligned_cols=161 Identities=21% Similarity=0.152 Sum_probs=90.5
Q ss_pred CCCEEEccCccCChhhHHhhhcCCCCcEEEccCCCcChhHHHHhhCCCCCcEEeccCCccCcchhhhhhCCCCCCEeecc
Q 013171 229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 308 (448)
Q Consensus 229 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~ 308 (448)
+|++|++++|.+....+..+..+++|+.|++++|.++......+..+++|++|+++++.+....+..+..+++|+.|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 44555555554444333334455555555555555544333334555566666666655554444445556666666666
Q ss_pred CCCCCcchhhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEccCCCCChhhHHHhhCCCCCCEEEcCCCCCChHH
Q 013171 309 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388 (448)
Q Consensus 309 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 388 (448)
+|.+....+..+..+++|+.|++++|.+.+.....+..+++|+.|++++|.+.. .+++|+.|+++.|.+++..
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~i 181 (208)
T 2o6s_A 109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVV 181 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTB
T ss_pred CCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCcee
Confidence 666655444445566666666666666655444445566667777776665543 4556666766666666655
Q ss_pred HHhhhCCC
Q 013171 389 AAYLRNFK 396 (448)
Q Consensus 389 ~~~~~~~~ 396 (448)
|..+..++
T Consensus 182 p~~~~~l~ 189 (208)
T 2o6s_A 182 RNSAGSVA 189 (208)
T ss_dssp BCTTSSBC
T ss_pred eccCcccc
Confidence 55554443
No 109
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.62 E-value=9.8e-16 Score=130.01 Aligned_cols=152 Identities=20% Similarity=0.164 Sum_probs=95.0
Q ss_pred CcEEEccCCCcChhHHHHhhCCCCCcEEeccCCccCcchhhhhhCCCCCCEeeccCCCCCcchhhhhcCCCCCCEEeccC
Q 013171 254 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333 (448)
Q Consensus 254 L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 333 (448)
.+.++.+++.++... . .-.++|+.|+++++.+....+..+..+++|+.|++++|.+.......+..+++|+.|++++
T Consensus 21 ~~~v~c~~~~l~~ip-~--~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHASVP-A--GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSSCC-S--CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCccC-C--CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 445666555544321 1 1225677777777776665556666667777777777776655555556667777777777
Q ss_pred CCCChHHHHHHhCCCCCcEeEccCCCCChhhHHHhhCCCCCCEEEcCCCCCChHHHHhhhCCCCCCEEeeCCCCCC
Q 013171 334 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 409 (448)
Q Consensus 334 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 409 (448)
|.+....+..+..+++|+.|++++|.++.. +..+..+++|+.|++++|++....+..+..+++|+.|++.+|.+.
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLTEL-PRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCSC-CTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CcCCccChhHhCcchhhCeEeccCCccccc-CcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 766655555556666777777777666643 344556666777777776666655555666667777777666654
No 110
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.61 E-value=1e-15 Score=128.99 Aligned_cols=152 Identities=15% Similarity=0.160 Sum_probs=104.9
Q ss_pred CEEEccCccCChhhHHhhhcCCCCcEEEccCCCcChhHHHHhhCCCCCcEEeccCCccCcchhhhhhCCCCCCEeeccCC
Q 013171 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310 (448)
Q Consensus 231 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 310 (448)
+.++.+++.++... ..+ .++++.|++++|.++...+..+..+++|+.|++++|.+....+..|..+++|+.|++++|
T Consensus 14 ~~v~c~~~~l~~iP-~~l--~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIP-TNL--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSCC-SSC--CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcCC-Ccc--CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 45666666554422 111 246777777777776655556677777777777777777666667777777777777777
Q ss_pred CCCcchhhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEccCCCCChhhHHHhhCCCCCCEEEcCCCCCC
Q 013171 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385 (448)
Q Consensus 311 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~ 385 (448)
.+.......+..+++|+.|++++|.+....+..+..+++|+.|++++|.++......+..+++|+.|++++|++.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 777655555667777777777777777666666777777777777777777665556667777777777777654
No 111
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.61 E-value=1.5e-16 Score=144.44 Aligned_cols=224 Identities=17% Similarity=0.083 Sum_probs=160.7
Q ss_pred CCCccEEEecCCCCChHHHHhccCCCCCCeEecCCCCCch-hHHHHHhcCCCCCE-EEccCccCChhhHHhhhcCCCCcE
Q 013171 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA-ACLDSLSALGSLFY-LNLNRCQLSDDGCEKFSKIGSLKV 256 (448)
Q Consensus 179 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~-L~l~~~~~~~~~~~~l~~~~~L~~ 256 (448)
.+++++|++++|.++......|.++++|++|++++|.+.+ .....|.++++++. +.+.+|.+....+..+..+++|+.
T Consensus 29 ~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~ 108 (350)
T 4ay9_X 29 PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY 108 (350)
T ss_dssp CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccc
Confidence 3679999999999987766778999999999999998754 33345677888776 455667787777778888999999
Q ss_pred EEccCCCcChhHHHHhhCCCCCcEEeccC-CccCcchhhhhhCC-CCCCEeeccCCCCCcchhhhhcCCCCCCEEeccC-
Q 013171 257 LNLGFNEITDECLVHLKGLTNLESLNLDS-CGIGDEGLVNLTGL-CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF- 333 (448)
Q Consensus 257 L~l~~~~~~~~~~~~l~~~~~L~~l~l~~-~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~- 333 (448)
|++++|.+.......+....++..+++.+ +.+.......|..+ ..++.|++++|.+.......+ ...+|+.+.+.+
T Consensus 109 L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~ 187 (350)
T 4ay9_X 109 LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDN 187 (350)
T ss_dssp EEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTC
T ss_pred ccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhc-cccchhHHhhccC
Confidence 99999888755444444556677777755 35555555555554 368889999998876544443 446788998875
Q ss_pred CCCChHHHHHHhCCCCCcEeEccCCCCChhhHHHhhCCCCCCEEEcCCCCCChHHHHhhhCCCCCCEEeeCCCC
Q 013171 334 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 407 (448)
Q Consensus 334 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 407 (448)
+.+......+|..+++|+.|++++|.++..... .+.+|+.|.+.++.-.+..| .+.++++|+.+++.++.
T Consensus 188 n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~---~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 188 NNLEELPNDVFHGASGPVILDISRTRIHSLPSY---GLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYPS 257 (350)
T ss_dssp TTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS---SCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCHH
T ss_pred CcccCCCHHHhccCcccchhhcCCCCcCccChh---hhccchHhhhccCCCcCcCC-CchhCcChhhCcCCCCc
Confidence 566665556778889999999999988875332 35667777765553222233 36778899999987643
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.61 E-value=1.2e-15 Score=138.96 Aligned_cols=176 Identities=19% Similarity=0.181 Sum_probs=97.1
Q ss_pred CeEecCCCCCchhHHHHHhcCCCCCEEEccCccCChhhHHhhh-cCCCCcEEEccCCCcChhHHHHhhCCCCCcEEeccC
Q 013171 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS-KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285 (448)
Q Consensus 207 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~ 285 (448)
+.++++++.+... |.. -.+.++.|++++|.++...+..+. .+++|+.|++++|.++...+..+..+++|+.|++++
T Consensus 21 ~~l~c~~~~l~~i-P~~--~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNV-PQS--LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSC-CSS--CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCcc-Ccc--CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 3555555554432 211 123466666666666655544454 566666666666666554444556666666666666
Q ss_pred CccCcchhhhhhCCCCCCEeeccCCCCCcchhhhhcCCCCCCEEeccCCCCChHHHHHH---hCCCCCcEeEccCCCCCh
Q 013171 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL---AGLSSLKSLNLDARQITD 362 (448)
Q Consensus 286 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~l~~ 362 (448)
|.+....+..|..+++|+.|++++|.+....+..+..+++|+.|++++|.+.......+ ..+++|+.|++++|.++.
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 66655544555566666666666666655555555566666666666665554433333 345556666666555555
Q ss_pred hhHHHhhCCCC--CCEEEcCCCCCC
Q 013171 363 TGLAALTSLTG--LTHLDLFGARIT 385 (448)
Q Consensus 363 ~~~~~l~~~~~--L~~L~l~~~~~~ 385 (448)
.....+..++. ++.|++.+|++.
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cCHHHhhhccHhhcceEEecCCCcc
Confidence 44444444444 255555555443
No 113
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.60 E-value=3e-15 Score=142.90 Aligned_cols=188 Identities=14% Similarity=0.097 Sum_probs=135.9
Q ss_pred CCCCeEecCCCCCchhHHHHHhcCCCCCEEEccCccCChhhHHhhhcCCCCcEEEccCCCcChhHHHHhhCCCCCcEEec
Q 013171 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283 (448)
Q Consensus 204 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l 283 (448)
.+++.|+++++.+... +..+ .++|+.|++++|.+... + ..+++|+.|++++|.+++. +. +.. +|+.|++
T Consensus 59 ~~L~~L~Ls~n~L~~l-p~~l--~~~L~~L~Ls~N~l~~i-p---~~l~~L~~L~Ls~N~l~~i-p~-l~~--~L~~L~L 127 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSL-PDNL--PPQITVLEITQNALISL-P---ELPASLEYLDACDNRLSTL-PE-LPA--SLKHLDV 127 (571)
T ss_dssp TTCSEEECCSSCCSCC-CSCC--CTTCSEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSCC-CC-CCT--TCCEEEC
T ss_pred CCccEEEeCCCCCCcc-CHhH--cCCCCEEECcCCCCccc-c---cccCCCCEEEccCCCCCCc-ch-hhc--CCCEEEC
Confidence 4788899988877653 3322 37889999998888743 3 4578889999988888763 33 433 8888999
Q ss_pred cCCccCcchhhhhhCCCCCCEeeccCCCCCcchhhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEccCCCCChh
Q 013171 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 363 (448)
Q Consensus 284 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 363 (448)
++|.+..... .+++|+.|++++|.+..... .+++|+.|++++|.+.... . +. ++|+.|++++|.++..
T Consensus 128 s~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp-~-l~--~~L~~L~Ls~N~L~~l 195 (571)
T 3cvr_A 128 DNNQLTMLPE----LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLP-E-LP--ESLEALDVSTNLLESL 195 (571)
T ss_dssp CSSCCSCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCC-C-CC--TTCCEEECCSSCCSSC
T ss_pred CCCcCCCCCC----cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcc-h-hh--CCCCEEECcCCCCCch
Confidence 8888775332 56888899998888876332 4678889999888877633 2 43 7888899888888754
Q ss_pred hHHHhhCCCCC-------CEEEcCCCCCChHHHHhhhCCCCCCEEeeCCCCCChhHHHhhhcC
Q 013171 364 GLAALTSLTGL-------THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL 419 (448)
Q Consensus 364 ~~~~l~~~~~L-------~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 419 (448)
.. +.. +| +.|++++|.++.. |..+..+++|+.|++++|.+++..|..+..+
T Consensus 196 p~--~~~--~L~~~~~~L~~L~Ls~N~l~~l-p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 196 PA--VPV--RNHHSEETEIFFRCRENRITHI-PENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp CC--CC----------CCEEEECCSSCCCCC-CGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred hh--HHH--hhhcccccceEEecCCCcceec-CHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 22 332 55 8888888888864 5556568888888888888888888877654
No 114
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.59 E-value=4.2e-16 Score=141.50 Aligned_cols=222 Identities=17% Similarity=0.089 Sum_probs=101.4
Q ss_pred CCCCeEeccCCcccChhHHHhhcCCCCCCEEeCCCCccccHHHHHHHhCCCCCcEEec-CCccccccchhhccCCCCCcE
Q 013171 81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL-ERCTRIHGGLVNLKGLMKLES 159 (448)
Q Consensus 81 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l-~~~~~~~~~~~~l~~l~~L~~ 159 (448)
+++++|+|++| .++.....+|.++++|++|++++|.+.....+.+|.++++++.+.. ..+......+..+..+++|++
T Consensus 30 ~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~ 108 (350)
T 4ay9_X 30 RNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY 108 (350)
T ss_dssp TTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred CCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccc
Confidence 34555555554 4444444455555555555555554332222334445555544332 222222222344555555555
Q ss_pred EeccCCCccCccccccCcCCCCccEEEecC-CCCChHHHHhccCC-CCCCeEecCCCCCchhHHHHHhcCCCCCEEEccC
Q 013171 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISC-SKVTDSGIAYLKGL-QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237 (448)
Q Consensus 160 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 237 (448)
|+++++ .+.......+....++..+++.+ +.+.......+..+ ..++.|++++|.+....... ....+|+.+.+.+
T Consensus 109 L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~-f~~~~L~~l~l~~ 186 (350)
T 4ay9_X 109 LLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSA-FNGTQLDELNLSD 186 (350)
T ss_dssp EEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTS-STTEEEEEEECTT
T ss_pred cccccc-ccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhh-ccccchhHHhhcc
Confidence 555553 22222222333334445555543 23333323333333 24555666666554432222 2334566666653
Q ss_pred -ccCChhhHHhhhcCCCCcEEEccCCCcChhHHHHhhCCCCCcEEeccCCccCcchhhhhhCCCCCCEeeccC
Q 013171 238 -CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 309 (448)
Q Consensus 238 -~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 309 (448)
+.+.......|..+++|+.|++++|.++...... +.+|+.|.+.++..-... +.+..+++|+.+++.+
T Consensus 187 ~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~l-P~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 187 NNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKL-PTLEKLVALMEASLTY 255 (350)
T ss_dssp CTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCC-CCTTTCCSCCEEECSC
T ss_pred CCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcC-CCchhCcChhhCcCCC
Confidence 3344433344566666666666666665432222 334444444333211111 2345566666666654
No 115
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.59 E-value=3.3e-15 Score=137.12 Aligned_cols=263 Identities=10% Similarity=0.101 Sum_probs=162.6
Q ss_pred CCCCcEEeccCCCccCccccccCcCCCCccEEEecCCCCChHHHHhccCCCCCCeEecCCCCCchhHHHHHhcCCCCCEE
Q 013171 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233 (448)
Q Consensus 154 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 233 (448)
+..++.+.+.. .++.....+|.++ +|+.+.+..+ +.......|.++ +|+.+.+.. .+.......|..|++|+.+
T Consensus 112 ~~~l~~i~ip~--~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 112 LKGYNEIILPN--SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp CSSCSEEECCT--TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred cCCccEEEECC--ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCee
Confidence 35555555543 2333444455553 5666666543 333334445443 466666654 3333334456667777777
Q ss_pred EccCccCChhhHHhhhcCCCCcEEEccCCCcChhHHHHhhCCCCCcEEeccCCccCcchhhhhhCCCCCCEeeccCCCCC
Q 013171 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 313 (448)
Q Consensus 234 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 313 (448)
++..+.+......+|. ..+|+.+.+..+ +.......|..+++|+.+.+..+ +...+..+|.. .+|+.+.+.. .+.
T Consensus 186 ~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~ 260 (401)
T 4fdw_A 186 DLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GVT 260 (401)
T ss_dssp ECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TCC
T ss_pred ecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-Ccc
Confidence 7766666554444454 466777777543 44344455677777777777653 44455555655 5777777743 355
Q ss_pred cchhhhhcCCCCCCEEeccCCCCC-----hHHHHHHhCCCCCcEeEccCCCCChhhHHHhhCCCCCCEEEcCCCCCChHH
Q 013171 314 SSGLRHLSGLTNLESINLSFTGIS-----DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388 (448)
Q Consensus 314 ~~~~~~l~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 388 (448)
......|..|++|+.+.+.++... .....+|.+|++|+.+.+.+ .+......++.++++|+.+.+.++ ++.+.
T Consensus 261 ~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~ 338 (401)
T 4fdw_A 261 NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQIN 338 (401)
T ss_dssp EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEEC
T ss_pred EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEc
Confidence 555666777778888877766443 34456677788888888873 466655667777888888888554 66666
Q ss_pred HHhhhCCCCCCEEeeCCCCCChhHHHhhhcCC-CCCeecccCC
Q 013171 389 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS-SLTLLNLSQN 430 (448)
Q Consensus 389 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~l~l~~~ 430 (448)
..+|.+| +|+.+.+.+|.........|.+++ .++.|++-.+
T Consensus 339 ~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 339 FSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp TTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred HHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHH
Confidence 7777788 888888888776655555666664 6777777654
No 116
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.59 E-value=3.8e-15 Score=125.47 Aligned_cols=152 Identities=22% Similarity=0.234 Sum_probs=107.7
Q ss_pred CEEEccCccCChhhHHhhhcCCCCcEEEccCCCcChhHH-HHhhCCCCCcEEeccCCccCcchhhhhhCCCCCCEeeccC
Q 013171 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL-VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 309 (448)
Q Consensus 231 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 309 (448)
+.++++++.++.. +..+ .+.++.|++++|.++...+ ..+..+++|+.|+++++.+....+..|..+++|+.|++++
T Consensus 14 ~~l~~s~n~l~~i-P~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNKI-PEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSSC-CSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcccC-ccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 4677777766542 2211 3356778887777765422 3356777788888887777766666677777888888888
Q ss_pred CCCCcchhhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEccCCCCChhhHHHhhCCCCCCEEEcCCCCCC
Q 013171 310 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385 (448)
Q Consensus 310 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~ 385 (448)
|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.++...+..+..+++|+.|++++|++.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 8777766666777778888888888777766666777778888888888777766667777778888888777665
No 117
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.59 E-value=2.1e-15 Score=139.27 Aligned_cols=326 Identities=15% Similarity=0.145 Sum_probs=231.5
Q ss_pred hcCCCccEEEcccCCCChHHhHhccCCCCCCeEeccCCcccChhHHHhhcCCCCCCEEeCCCCccccHHHHHHHhCCCCC
Q 013171 54 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133 (448)
Q Consensus 54 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L 133 (448)
..|.+|+++.+.. .++.....+|..|.+|+.+++.. .+......+|..+..|+.+.+... +......+|.++..+
T Consensus 68 ~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~c~~L~~i~~p~~--l~~i~~~aF~~~~~~ 142 (394)
T 4fs7_A 68 QGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPD--SVKMIGRCTFSGCYALKSILLPLM--LKSIGVEAFKGCDFK 142 (394)
T ss_dssp TTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCCCCCCTT--CCEECTTTTTTCCCS
T ss_pred hCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCC--CceEccchhhcccccchhhcccCc--eeeecceeeeccccc
Confidence 4678999999975 37766778899999999999976 477777788999999999888765 233445567777655
Q ss_pred cEEecCCccccccchhhccCCCCCcEEeccCCCccCccccccCcCCCCccEEEecCCCCChHHHHhccCCCCCCeEecCC
Q 013171 134 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213 (448)
Q Consensus 134 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 213 (448)
+....... ......++..|++|+.+.+... ........+..+.+|+.+.+..+ +.......+.++..|+.+.+..
T Consensus 143 ~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~ 217 (394)
T 4fs7_A 143 EITIPEGV--TVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPN 217 (394)
T ss_dssp EEECCTTC--CEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCT
T ss_pred ccccCccc--cccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCC
Confidence 44444332 2334466888999999999752 34455567888999999988755 4434455678888898888776
Q ss_pred CCCchhHHHHHhcCCCCCEEEccCccCChhhHHhhhcCCCCcEEEccCCCcChhHHHHhhCCCCCcEEeccCCccCcchh
Q 013171 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293 (448)
Q Consensus 214 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~ 293 (448)
+.... ........+|+.+.+... ........+..+..++.+.+..+.. ......+..+..++.+......+ ..
T Consensus 218 ~~~~i--~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~i---~~ 290 (394)
T 4fs7_A 218 SLYYL--GDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVIV---PE 290 (394)
T ss_dssp TCCEE--CTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSEE---CT
T ss_pred CceEe--ehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcc-eeeccccccccccceeccCceee---cc
Confidence 53221 122334578888888653 2333345677788899988876532 22234567788888887765432 33
Q ss_pred hhhhCCCCCCEeeccCCCCCcchhhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEccCCCCChhhHHHhhCCCC
Q 013171 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 373 (448)
Q Consensus 294 ~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~ 373 (448)
..|..+.+|+.+.+..+ +......+|..|.+|+.+.+..+ +......+|.+|.+|+.+.+..+ ++..+..++.+|++
T Consensus 291 ~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~ 367 (394)
T 4fs7_A 291 KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCIN 367 (394)
T ss_dssp TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTT
T ss_pred ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCC
Confidence 45778889999998764 55556677889999999999754 66666678889999999999765 66666778889999
Q ss_pred CCEEEcCCCCCChHHHHhhhCCCCCCEE
Q 013171 374 LTHLDLFGARITDSGAAYLRNFKNLRSL 401 (448)
Q Consensus 374 L~~L~l~~~~~~~~~~~~~~~~~~L~~L 401 (448)
|+.+.+..+ +.. ...++.+|++|+.+
T Consensus 368 L~~i~lp~~-~~~-~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 368 LKKVELPKR-LEQ-YRYDFEDTTKFKWI 393 (394)
T ss_dssp CCEEEEEGG-GGG-GGGGBCTTCEEEEE
T ss_pred CCEEEECCC-CEE-hhheecCCCCCcEE
Confidence 999999764 333 24568888888775
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.58 E-value=1e-15 Score=132.78 Aligned_cols=169 Identities=21% Similarity=0.274 Sum_probs=137.1
Q ss_pred CCCCEEEccCccCChhhHHhhhcCCCCcEEEccCCCcChhHHHHhhCCCCCcEEeccCCccCcchhhhhhCCCCCCEeec
Q 013171 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 307 (448)
Q Consensus 228 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l 307 (448)
.++..++++.+.+.+.. .+..+++|+.|+++++.++... .+..+++|+.|++++|.+....+ +..+++|+.|++
T Consensus 19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L 92 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence 34555667777766543 4677889999999999887543 57888999999999998876554 788999999999
Q ss_pred cCCCCCcchhhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEccCCCCChhhHHHhhCCCCCCEEEcCCCCCChH
Q 013171 308 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 387 (448)
Q Consensus 308 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~ 387 (448)
++|.+.+... +.. ++|+.|++++|.+.+. ..+..+++|+.|++++|.+++. ..+..+++|+.|++++|++.+.
T Consensus 93 ~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 93 NRNRLKNLNG--IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp CSSCCSCCTT--CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCBC
T ss_pred CCCccCCcCc--ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcch
Confidence 9998876432 333 8999999999988874 3578899999999999999885 3678899999999999999876
Q ss_pred HHHhhhCCCCCCEEeeCCCCCChh
Q 013171 388 GAAYLRNFKNLRSLEICGGGLTDA 411 (448)
Q Consensus 388 ~~~~~~~~~~L~~L~l~~~~~~~~ 411 (448)
..+..+++|+.|++++|.+...
T Consensus 166 --~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 166 --GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp --TTSTTCCCCCEEEEEEEEEECC
T ss_pred --HHhccCCCCCEEeCCCCcccCC
Confidence 6678899999999999987655
No 119
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.58 E-value=1.6e-14 Score=131.21 Aligned_cols=170 Identities=23% Similarity=0.283 Sum_probs=84.5
Q ss_pred CCCCEEEccCccCChhhHHhhhcC-----CCCcEEEccCCCcChhHHHHh-hCCCCCcEEeccCCccCcchhhhhhCCCC
Q 013171 228 GSLFYLNLNRCQLSDDGCEKFSKI-----GSLKVLNLGFNEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLTGLCN 301 (448)
Q Consensus 228 ~~L~~L~l~~~~~~~~~~~~l~~~-----~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~l~l~~~~~~~~~~~~l~~~~~ 301 (448)
+.|+.|++++|.++......+... ++|+.|++++|.+++.....+ ..+++|+.|++++|.++..+...+..
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~--- 148 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD--- 148 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH---
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH---
Confidence 566677776666665444433321 456666666665554333222 12334555555555544333333210
Q ss_pred CCEeeccCCCCCcchhhhh-cCCCCCCEEeccCCCCChHHHHH----HhCCCCCcEeEccCCCCChhhH----HHhhCCC
Q 013171 302 LKCLELSDTQVGSSGLRHL-SGLTNLESINLSFTGISDGSLRK----LAGLSSLKSLNLDARQITDTGL----AALTSLT 372 (448)
Q Consensus 302 L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~l~~~~~----~~l~~~~ 372 (448)
.+ ...++|+.|++++|.+.+..... +..+++|++|++++|.+.+.+. ..+..++
T Consensus 149 -----------------~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~ 211 (372)
T 3un9_A 149 -----------------LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNR 211 (372)
T ss_dssp -----------------HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCS
T ss_pred -----------------HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCC
Confidence 01 12345555555555554433222 2345556666666655554432 2334455
Q ss_pred CCCEEEcCCCCCChHHHH----hhhCCCCCCEEeeCCCCCChhHHHhhh
Q 013171 373 GLTHLDLFGARITDSGAA----YLRNFKNLRSLEICGGGLTDAGVKHIK 417 (448)
Q Consensus 373 ~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~l~ 417 (448)
+|+.|++++|.+++.+.. .+..+++|++|++++|.+++.+...+.
T Consensus 212 ~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~ 260 (372)
T 3un9_A 212 QLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLR 260 (372)
T ss_dssp CCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHH
T ss_pred CcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHH
Confidence 666666666666554332 233456666666666666655555553
No 120
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.58 E-value=1.3e-14 Score=131.92 Aligned_cols=169 Identities=24% Similarity=0.381 Sum_probs=123.5
Q ss_pred CCCcEEeccCCccCcchhhhhh-----CCCCCCEeeccCCCCCcchhhhh-cCCCCCCEEeccCCCCChHHHHHHh----
Q 013171 276 TNLESLNLDSCGIGDEGLVNLT-----GLCNLKCLELSDTQVGSSGLRHL-SGLTNLESINLSFTGISDGSLRKLA---- 345 (448)
Q Consensus 276 ~~L~~l~l~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~---- 345 (448)
++|+.+++++|.++......+. ..++|+.|++++|.+++.....+ ..+++|+.|++++|.+.+.....+.
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 3455555555555443333322 12466677777766655443333 2345788999999988877666553
Q ss_pred -CCCCCcEeEccCCCCChhhHHH----hhCCCCCCEEEcCCCCCChHH----HHhhhCCCCCCEEeeCCCCCChhHHHhh
Q 013171 346 -GLSSLKSLNLDARQITDTGLAA----LTSLTGLTHLDLFGARITDSG----AAYLRNFKNLRSLEICGGGLTDAGVKHI 416 (448)
Q Consensus 346 -~~~~L~~L~l~~~~l~~~~~~~----l~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~l 416 (448)
..++|++|++++|.+++.+... +..+++|++|++++|.+.+.+ ...+..+++|+.|++++|.+++.....+
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 4689999999999998765544 467899999999999998765 4556778999999999999997655444
Q ss_pred ----hcCCCCCeecccCCCCCCHHHHHHHHhhh
Q 013171 417 ----KDLSSLTLLNLSQNCNLTDKTLELISGIL 445 (448)
Q Consensus 417 ----~~~~~L~~l~l~~~~~l~~~~~~~l~~~~ 445 (448)
..+++|+.|++++| .+++.+++.+.++.
T Consensus 232 ~~~L~~~~~L~~L~Ls~N-~i~~~g~~~L~~~~ 263 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFN-ELSSEGRQVLRDLG 263 (372)
T ss_dssp HHHHHHCSSCCEEECTTS-SCCHHHHHHHHHCC
T ss_pred HHHHHhCCCCCEEeccCC-CCCHHHHHHHHHHh
Confidence 56799999999999 79999999887754
No 121
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.58 E-value=2.1e-15 Score=130.69 Aligned_cols=169 Identities=26% Similarity=0.308 Sum_probs=139.6
Q ss_pred CCCCeEecCCCCCchhHHHHHhcCCCCCEEEccCccCChhhHHhhhcCCCCcEEEccCCCcChhHHHHhhCCCCCcEEec
Q 013171 204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283 (448)
Q Consensus 204 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l 283 (448)
.++..+.++++.+.... .+..+++|+.|++++|.+.... .+..+++|+.|++++|.+++..+ +..+++|+.|++
T Consensus 19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L 92 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence 44556667777665543 4677899999999999987643 67889999999999999887654 889999999999
Q ss_pred cCCccCcchhhhhhCCCCCCEeeccCCCCCcchhhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEccCCCCChh
Q 013171 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 363 (448)
Q Consensus 284 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 363 (448)
++|.+..... +.. ++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+.. .+..+++|+.|++++|.+++.
T Consensus 93 ~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 93 NRNRLKNLNG--IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp CSSCCSCCTT--CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCBC
T ss_pred CCCccCCcCc--ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcch
Confidence 9998875432 333 8999999999998874 35788999999999999998753 688899999999999999986
Q ss_pred hHHHhhCCCCCCEEEcCCCCCChH
Q 013171 364 GLAALTSLTGLTHLDLFGARITDS 387 (448)
Q Consensus 364 ~~~~l~~~~~L~~L~l~~~~~~~~ 387 (448)
..+..+++|+.|++++|++...
T Consensus 166 --~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 166 --GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp --TTSTTCCCCCEEEEEEEEEECC
T ss_pred --HHhccCCCCCEEeCCCCcccCC
Confidence 6678899999999999987764
No 122
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.57 E-value=1e-14 Score=133.81 Aligned_cols=241 Identities=11% Similarity=0.126 Sum_probs=144.8
Q ss_pred CCcEEeccCCCccCccccccCcCCCCccEEEecCCCCChHHHHhccCCCCCCeEecCCCCCchhHHHHHhcCCCCCEEEc
Q 013171 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235 (448)
Q Consensus 156 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 235 (448)
+|+.+.+..+ +......+|.++ +|+.+.+.. .+.......|.+|++|+.+++.++.+.......|. +.+|+.+.+
T Consensus 136 ~L~~i~l~~~--i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~l 210 (401)
T 4fdw_A 136 QIAKVVLNEG--LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLL 210 (401)
T ss_dssp CCSEEECCTT--CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEEC
T ss_pred CccEEEeCCC--ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEe
Confidence 3555544431 333333344442 355555543 33333334455555555555555544443333333 356666666
Q ss_pred cCccCChhhHHhhhcCCCCcEEEccCCCcChhHHHHhhCCCCCcEEeccCCccCcchhhhhhCCCCCCEeeccCCCCC--
Q 013171 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG-- 313 (448)
Q Consensus 236 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-- 313 (448)
..+ +......+|.++++|+.+.+..+ ++......|.. .+|+.+.+.. .+......+|..+++|+.+.+.++...
T Consensus 211 p~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~ 286 (401)
T 4fdw_A 211 PVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDD 286 (401)
T ss_dssp CTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCC
T ss_pred CCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCC
Confidence 532 44444455666666666666543 22233334444 5677777743 355556667777788888887776543
Q ss_pred ---cchhhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEccCCCCChhhHHHhhCCCCCCEEEcCCCCCChHHHH
Q 013171 314 ---SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 390 (448)
Q Consensus 314 ---~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 390 (448)
......|..|++|+.+.+.. .+......+|.+|++|+.+.+.. .++.....++.++ +|+.+.+.+|........
T Consensus 287 ~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~-~l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~ 363 (401)
T 4fdw_A 287 PEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPA-NVTQINFSAFNNT-GIKEVKVEGTTPPQVFEK 363 (401)
T ss_dssp TTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECT-TCCEECTTSSSSS-CCCEEEECCSSCCBCCCS
T ss_pred cccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECc-cccEEcHHhCCCC-CCCEEEEcCCCCcccccc
Confidence 34456677888888888873 46666667788888888888854 3666556677788 899999988877766566
Q ss_pred hhhCCC-CCCEEeeCCCCC
Q 013171 391 YLRNFK-NLRSLEICGGGL 408 (448)
Q Consensus 391 ~~~~~~-~L~~L~l~~~~~ 408 (448)
.+..++ .++.|.+..+.+
T Consensus 364 ~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 364 VWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp SCCCSCTTCCEEEECGGGH
T ss_pred cccCCCCCccEEEeCHHHH
Confidence 676664 778888877654
No 123
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.57 E-value=5.6e-15 Score=141.05 Aligned_cols=188 Identities=19% Similarity=0.104 Sum_probs=147.4
Q ss_pred CCccEEEecCCCCChHHHHhccCCCCCCeEecCCCCCchhHHHHHhcCCCCCEEEccCccCChhhHHhhhcCCCCcEEEc
Q 013171 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259 (448)
Q Consensus 180 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 259 (448)
.+++.|+++++.+++ .+..+ .++|++|++++|.+... + ..+++|+.|++++|.++.. +. +.. +|+.|++
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~i-p---~~l~~L~~L~Ls~N~l~~i-p~-l~~--~L~~L~L 127 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALISL-P---ELPASLEYLDACDNRLSTL-PE-LPA--SLKHLDV 127 (571)
T ss_dssp TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSCC-CC-CCT--TCCEEEC
T ss_pred CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCccc-c---cccCCCCEEEccCCCCCCc-ch-hhc--CCCEEEC
Confidence 389999999998876 33333 37899999999988754 3 5679999999999998873 33 443 9999999
Q ss_pred cCCCcChhHHHHhhCCCCCcEEeccCCccCcchhhhhhCCCCCCEeeccCCCCCcchhhhhcCCCCCCEEeccCCCCChH
Q 013171 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339 (448)
Q Consensus 260 ~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 339 (448)
++|.+++.. . .+++|+.|++++|.+..... .+++|+.|++++|.+..... +. ++|+.|++++|.+...
T Consensus 128 s~N~l~~lp-~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~l 195 (571)
T 3cvr_A 128 DNNQLTMLP-E---LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLESL 195 (571)
T ss_dssp CSSCCSCCC-C---CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSSC
T ss_pred CCCcCCCCC-C---cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCch
Confidence 999988632 2 67899999999999875332 56899999999999887433 44 8999999999988754
Q ss_pred HHHHHhCCCCC-------cEeEccCCCCChhhHHHhhCCCCCCEEEcCCCCCChHHHHhhhCC
Q 013171 340 SLRKLAGLSSL-------KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 395 (448)
Q Consensus 340 ~~~~~~~~~~L-------~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 395 (448)
.. +.. +| +.|++++|.++.. +..+..+++|+.|++++|++++..+..+..+
T Consensus 196 p~--~~~--~L~~~~~~L~~L~Ls~N~l~~l-p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 196 PA--VPV--RNHHSEETEIFFRCRENRITHI-PENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp CC--CC----------CCEEEECCSSCCCCC-CGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred hh--HHH--hhhcccccceEEecCCCcceec-CHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 32 332 66 9999999999875 5556679999999999999999888877554
No 124
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.56 E-value=8.1e-15 Score=124.33 Aligned_cols=153 Identities=22% Similarity=0.214 Sum_probs=99.9
Q ss_pred CCEEEccCccCChhhHHhhhcCCCCcEEEccCCCcChhHHHHhhCCCCCcEEeccCCccCcchhhhhhCCCCCCEeeccC
Q 013171 230 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD 309 (448)
Q Consensus 230 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 309 (448)
-+.++.+++.+.... .. -.++|+.|++++|.+++..+..+..+++|+.|++++|.+.......|..+++|+.|++++
T Consensus 21 ~~~v~c~~~~l~~ip-~~--~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHASVP-AG--IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSSCC-SC--CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCccC-CC--CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 345666655544322 11 135677777777777665555666777777777777777655555566677777777777
Q ss_pred CCCCcchhhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEccCCCCChhhHHHhhCCCCCCEEEcCCCCCCh
Q 013171 310 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386 (448)
Q Consensus 310 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~ 386 (448)
|.+.......+..+++|+.|++++|.+... +..+..+++|+.|++++|.++......+..+++|+.|++.+|++..
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLTEL-PRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCSC-CTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CcCCccChhHhCcchhhCeEeccCCccccc-CcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 777665555566677777777777776643 3445667777777777777776555556667777777777776653
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.56 E-value=1.1e-14 Score=114.83 Aligned_cols=128 Identities=24% Similarity=0.288 Sum_probs=81.9
Q ss_pred CCCCEeeccCCCCC-cchhhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEccCCCCChhhHHHhhCCCCCCEEE
Q 013171 300 CNLKCLELSDTQVG-SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 378 (448)
Q Consensus 300 ~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~ 378 (448)
++++.|++++|.+. ...+..+..+++|+.|++++|.+... ..+..+++|+.|++++|.+++..+..+..+++|+.|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45555555555554 22333445556666666666665554 4455666777777777776664455555677777777
Q ss_pred cCCCCCChH-HHHhhhCCCCCCEEeeCCCCCChhHH---HhhhcCCCCCeecccC
Q 013171 379 LFGARITDS-GAAYLRNFKNLRSLEICGGGLTDAGV---KHIKDLSSLTLLNLSQ 429 (448)
Q Consensus 379 l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~~~~L~~l~l~~ 429 (448)
+++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|++++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 777777764 23566777778888888777766544 4567778888887753
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.51 E-value=5.1e-14 Score=110.91 Aligned_cols=129 Identities=22% Similarity=0.265 Sum_probs=100.3
Q ss_pred CCCCcEEeccCCccC-cchhhhhhCCCCCCEeeccCCCCCcchhhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEe
Q 013171 275 LTNLESLNLDSCGIG-DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 353 (448)
Q Consensus 275 ~~~L~~l~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 353 (448)
.++++.++++++.+. ...+..+..+++|+.|++++|.+... ..+..+++|+.|++++|.+.+..+..+..+++|+.|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 356778888877776 34444566778888888888887764 567778889999999888887666777778899999
Q ss_pred EccCCCCChhh-HHHhhCCCCCCEEEcCCCCCChHHH---HhhhCCCCCCEEeeCC
Q 013171 354 NLDARQITDTG-LAALTSLTGLTHLDLFGARITDSGA---AYLRNFKNLRSLEICG 405 (448)
Q Consensus 354 ~l~~~~l~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~ 405 (448)
++++|.+++.. +..+..+++|+.|++++|.+++..+ ..+..+++|+.|++++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 99999888753 4677888999999999998877654 5678889999988764
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.51 E-value=1.5e-14 Score=116.59 Aligned_cols=129 Identities=25% Similarity=0.279 Sum_probs=66.1
Q ss_pred CCCCEeeccCCCCC-cchhhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEccCCCCChhhHHHhhCCCCCCEEE
Q 013171 300 CNLKCLELSDTQVG-SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 378 (448)
Q Consensus 300 ~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~ 378 (448)
++|+.|++.+|.+. ...+..+..+++|+.|++++|.+... ..+..+++|+.|++++|.+....+..+..+++|+.|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 34444444444443 11222233444555555555544433 3344455555555555555543334444456666666
Q ss_pred cCCCCCChHH-HHhhhCCCCCCEEeeCCCCCChhHH---HhhhcCCCCCeecccCC
Q 013171 379 LFGARITDSG-AAYLRNFKNLRSLEICGGGLTDAGV---KHIKDLSSLTLLNLSQN 430 (448)
Q Consensus 379 l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~~~~L~~l~l~~~ 430 (448)
+++|.+++.. +..+..+++|+.|++++|.+++..+ ..+..+++|+.|++++|
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence 6666555532 2445556666666666666554433 35556666666666666
No 128
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.50 E-value=5.1e-16 Score=148.99 Aligned_cols=209 Identities=16% Similarity=0.113 Sum_probs=133.6
Q ss_pred cCCCCCCeEecCCCCCchhHHHHHhcCCCCCEEEccCccCChhhHHhhhcCCCCcEEEccCCCcChhHHHHhhCCCCCcE
Q 013171 201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280 (448)
Q Consensus 201 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 280 (448)
..+++|+.|+++++.+.. .|..++.+++|+.|+++++......+..+. .+...+..+..+..+++|+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~~-Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~-----------~~~~~~~~~~~l~~l~~L~~ 413 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTV-LQSELESCKELQELEPENKWCLLTIILLMR-----------ALDPLLYEKETLQYFSTLKA 413 (567)
T ss_dssp STTTTSSSCCCCHHHHHH-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-----------HHCTGGGHHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHHh-hHHHHHHHHHHHHhccccchhhhhHHHHHH-----------hcccccCCHHHHHHHHhccc
Confidence 345667777777776643 466677777777777655431110110000 00112233444555555555
Q ss_pred Ee-ccCCccCcch--------hhhhhCCCCCCEeeccCCCCCcchhhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCc
Q 013171 281 LN-LDSCGIGDEG--------LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351 (448)
Q Consensus 281 l~-l~~~~~~~~~--------~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 351 (448)
|+ ++.+.+.... ...+. ...|+.|++++|.+... +. +..+++|+.|++++|.+.. .|..++.+++|+
T Consensus 414 L~~l~~n~~~~L~~l~l~~n~i~~l~-~~~L~~L~Ls~n~l~~l-p~-~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~ 489 (567)
T 1dce_A 414 VDPMRAAYLDDLRSKFLLENSVLKME-YADVRVLHLAHKDLTVL-CH-LEQLLLVTHLDLSHNRLRA-LPPALAALRCLE 489 (567)
T ss_dssp HCGGGHHHHHHHHHHHHHHHHHHHHH-HTTCSEEECTTSCCSSC-CC-GGGGTTCCEEECCSSCCCC-CCGGGGGCTTCC
T ss_pred CcchhhcccchhhhhhhhcccccccC-ccCceEEEecCCCCCCC-cC-ccccccCcEeecCcccccc-cchhhhcCCCCC
Confidence 55 3333221110 01111 13588888888888763 33 7778888888888888874 456778888899
Q ss_pred EeEccCCCCChhhHHHhhCCCCCCEEEcCCCCCChHH-HHhhhCCCCCCEEeeCCCCCChhHH---HhhhcCCCCCeecc
Q 013171 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG-AAYLRNFKNLRSLEICGGGLTDAGV---KHIKDLSSLTLLNL 427 (448)
Q Consensus 352 ~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~~~~L~~l~l 427 (448)
.|++++|.++.. + .++.+++|+.|++++|.+++.. |..+..+++|+.|++++|++++..+ ..+..+|+|+.|++
T Consensus 490 ~L~Ls~N~l~~l-p-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 490 VLQASDNALENV-D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp EEECCSSCCCCC-G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred EEECCCCCCCCC-c-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 999988888874 3 7788889999999999888865 7788888999999999988876533 22345788888754
No 129
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.49 E-value=4e-14 Score=114.02 Aligned_cols=135 Identities=24% Similarity=0.285 Sum_probs=100.2
Q ss_pred CCCCCcEEeccCCccC-cchhhhhhCCCCCCEeeccCCCCCcchhhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcE
Q 013171 274 GLTNLESLNLDSCGIG-DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352 (448)
Q Consensus 274 ~~~~L~~l~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 352 (448)
..++|+.|++++|.+. ...+..+..+++|+.|++.+|.+... ..+..+++|+.|++++|.+....+..+..+++|+.
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 3466777777777765 23344456677888888888877664 56677888888888888877655566666888888
Q ss_pred eEccCCCCChhh-HHHhhCCCCCCEEEcCCCCCChHHH---HhhhCCCCCCEEeeCCCCCCh
Q 013171 353 LNLDARQITDTG-LAALTSLTGLTHLDLFGARITDSGA---AYLRNFKNLRSLEICGGGLTD 410 (448)
Q Consensus 353 L~l~~~~l~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~ 410 (448)
|++++|.+++.. +..+..+++|+.|++++|.+++..+ ..+..+++|+.|++.+|.+..
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 888888887753 3667788889999998888876544 467888899999988887654
No 130
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.48 E-value=2.2e-15 Score=144.60 Aligned_cols=210 Identities=18% Similarity=0.152 Sum_probs=146.0
Q ss_pred CcCCCCccEEEecCCCCChHHHHhccCCCCCCeEecCCCCCchhHHHHHhcCCCCCEEEccCccCChhhHHhhhcCCCCc
Q 013171 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255 (448)
Q Consensus 176 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 255 (448)
+..+++|+.|++++|.+. ..|..++.+++|+.|+++++......+..+.. +......+..+..+++|+
T Consensus 345 ~~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~-----------~~~~~~~~~~l~~l~~L~ 412 (567)
T 1dce_A 345 SATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRA-----------LDPLLYEKETLQYFSTLK 412 (567)
T ss_dssp CSTTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-----------HCTGGGHHHHHHHHHHHH
T ss_pred cccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHh-----------cccccCCHHHHHHHHhcc
Confidence 356789999999999886 66888899999999998665311111111110 111122334444455555
Q ss_pred EEE-ccCCCcChh--------HHHHhhCCCCCcEEeccCCccCcchhhhhhCCCCCCEeeccCCCCCcchhhhhcCCCCC
Q 013171 256 VLN-LGFNEITDE--------CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 326 (448)
Q Consensus 256 ~L~-l~~~~~~~~--------~~~~l~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 326 (448)
.|+ ++.+.+... ....+. ...|+.|++++|.+... + .++.+++|+.|++++|.+.. .|..+..+++|
T Consensus 413 ~L~~l~~n~~~~L~~l~l~~n~i~~l~-~~~L~~L~Ls~n~l~~l-p-~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L 488 (567)
T 1dce_A 413 AVDPMRAAYLDDLRSKFLLENSVLKME-YADVRVLHLAHKDLTVL-C-HLEQLLLVTHLDLSHNRLRA-LPPALAALRCL 488 (567)
T ss_dssp HHCGGGHHHHHHHHHHHHHHHHHHHHH-HTTCSEEECTTSCCSSC-C-CGGGGTTCCEEECCSSCCCC-CCGGGGGCTTC
T ss_pred cCcchhhcccchhhhhhhhcccccccC-ccCceEEEecCCCCCCC-c-CccccccCcEeecCcccccc-cchhhhcCCCC
Confidence 554 333222110 011111 13588999999988754 3 37888999999999998884 56678889999
Q ss_pred CEEeccCCCCChHHHHHHhCCCCCcEeEccCCCCChhh-HHHhhCCCCCCEEEcCCCCCChHHH---HhhhCCCCCCEEe
Q 013171 327 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG-LAALTSLTGLTHLDLFGARITDSGA---AYLRNFKNLRSLE 402 (448)
Q Consensus 327 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~ 402 (448)
+.|++++|.+++. + .++.+++|+.|++++|.+++.. +..++.+++|+.|++++|++++..+ ..+..+|+|+.|+
T Consensus 489 ~~L~Ls~N~l~~l-p-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 489 EVLQASDNALENV-D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CEEECCSSCCCCC-G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CEEECCCCCCCCC-c-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 9999999988874 3 7888999999999999998876 7788899999999999998877533 2235589999886
Q ss_pred e
Q 013171 403 I 403 (448)
Q Consensus 403 l 403 (448)
+
T Consensus 567 l 567 (567)
T 1dce_A 567 T 567 (567)
T ss_dssp C
T ss_pred C
Confidence 4
No 131
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.46 E-value=5.9e-13 Score=122.82 Aligned_cols=330 Identities=16% Similarity=0.147 Sum_probs=164.6
Q ss_pred hHhccCCC-CCCeEeccCCcccChhHHHhhcCCCCCCEEeCCCCc--cccHHHHHHHhCCCCCcEEecCCccccccchhh
Q 013171 74 LIHLKDCS-NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN--AITAQGMKAFAGLINLVKLDLERCTRIHGGLVN 150 (448)
Q Consensus 74 ~~~~~~~~-~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 150 (448)
..+|..|. .|+.+.+.. .++.....+|.+|.+|+.+.+..+. .+......+|..|.+|+.+.+... .......+
T Consensus 56 ~~aF~~~~~~L~sI~iP~--svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~a 132 (394)
T 4gt6_A 56 DRVFCNYKYVLTSVQIPD--TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEA 132 (394)
T ss_dssp TTTTTTCCSCCCEEEECT--TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTT
T ss_pred HhhccCCCCcCEEEEECC--CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhh
Confidence 34555553 467766655 3566666666667777777665431 122333445566666666655442 22233344
Q ss_pred ccCCCCCcEEeccCCCccCccccccCcCCCCccEEEecCCCCChHHHHhccCCCCCCeEecCCCCCchhHHHHHhcCCCC
Q 013171 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230 (448)
Q Consensus 151 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 230 (448)
+..+.+|+.+.+.. .........+..+..|+.+.+..+ +.......+.+ ..|+.+.+.... .......+..+..+
T Consensus 133 F~~c~~L~~i~lp~--~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~-~~i~~~af~~c~~l 207 (394)
T 4gt6_A 133 FHHCEELDTVTIPE--GVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKV-TRIGTNAFSECFAL 207 (394)
T ss_dssp TTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTC-CEECTTTTTTCTTC
T ss_pred hhhhcccccccccc--eeeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcc-cccccchhhhcccc
Confidence 55566666666643 223333445555666666655432 22122222322 345555554331 11112234445555
Q ss_pred CEEEccCccCChhhHHhhhcCCCCcEEEccCCCcChhHHHHhhCCCCCcEEeccCCccCcchhhhhhCCCCCCEeeccCC
Q 013171 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 310 (448)
Q Consensus 231 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 310 (448)
+................+......... .........+..+.+.. .+...+..+|..+..|+.+.+...
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~ 275 (394)
T 4gt6_A 208 STITSDSESYPAIDNVLYEKSANGDYA-----------LIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDS 275 (394)
T ss_dssp CEEEECCSSSCBSSSCEEEECTTSCEE-----------EEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTT
T ss_pred ceecccccccccccceeeccccccccc-----------ccccccccccceEEcCC-cceEcccceeeecccccEEecccc
Confidence 554443322111000000000000000 00011122334444432 233344455666777777777544
Q ss_pred CCCcchhhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEccCCCCChhhHHHhhCCCCCCEEEcCCCCCChHHHH
Q 013171 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 390 (448)
Q Consensus 311 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 390 (448)
........+..+++|+.+.+.. .+......+|.+|.+|+.+.+.. .++..+..++.+|.+|+.+.+..+ ++.+...
T Consensus 276 -~~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~ 351 (394)
T 4gt6_A 276 -VVSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPE-GITQILDDAFAGCEQLERIAIPSS-VTKIPES 351 (394)
T ss_dssp -CCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEEECTT-CCBCCGG
T ss_pred -cceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCC-cccEehHhHhhCCCCCCEEEECcc-cCEEhHh
Confidence 2233445566777777777753 34444456677777888887754 355555566777888888888543 6666677
Q ss_pred hhhCCCCCCEEeeCCCCCChhHHHhhhcCCCCCeecccCC
Q 013171 391 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430 (448)
Q Consensus 391 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~ 430 (448)
+|.+|++|+.+++.++... ...+..+..|+.+.+..+
T Consensus 352 aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 352 AFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPG 388 (394)
T ss_dssp GGTTCTTCCEEEESSCHHH---HHTCBCCCCC--------
T ss_pred HhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCC
Confidence 7888888888888776422 345667777877777544
No 132
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.45 E-value=4.8e-14 Score=116.00 Aligned_cols=128 Identities=16% Similarity=0.268 Sum_probs=91.5
Q ss_pred cEEeccCCccCcchhhhhhCCCCCCEeeccCCCCCcchhh-hhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEccC
Q 013171 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR-HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357 (448)
Q Consensus 279 ~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 357 (448)
+.++++++.+.... ..+ .++++.|++.+|.+....+. .+..+++|++|++++|.+....+..+..+++|+.|++++
T Consensus 11 ~~l~~s~~~l~~ip-~~~--~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIP-RDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCC-SCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCc-cCC--CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 56777777665332 222 23778888888877665443 366777888888888877776666777777888888888
Q ss_pred CCCChhhHHHhhCCCCCCEEEcCCCCCChHHHHhhhCCCCCCEEeeCCCCCC
Q 013171 358 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 409 (448)
Q Consensus 358 ~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 409 (448)
|.++......+..+++|+.|++++|++++..+..+..+++|+.|++++|.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 8777765556677777888888888777766677777778888888777765
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.43 E-value=1.6e-13 Score=112.83 Aligned_cols=126 Identities=21% Similarity=0.204 Sum_probs=74.1
Q ss_pred cEEeccCCccCcchhhhhhCCCCCCEeeccCCCCCcchhhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEccCC
Q 013171 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358 (448)
Q Consensus 279 ~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 358 (448)
+.++++++.+.... ..+ .++|+.|++.+|.+... +..+..+++|+.|++++|.+....+..|..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~~ip-~~~--~~~l~~L~L~~n~i~~i-p~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLP-KGI--PRDVTELYLDGNQFTLV-PKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSSCC-SCC--CTTCCEEECCSSCCCSC-CGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCcCC-CCC--CCCCCEEECCCCcCchh-HHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 45566665554322 111 24666666666666542 345566666666666666666555555666666666666666
Q ss_pred CCChhhHHHhhCCCCCCEEEcCCCCCChHHHHhhhCCCCCCEEeeCCCCC
Q 013171 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 408 (448)
Q Consensus 359 ~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 408 (448)
.++...+..+..+++|+.|++++|.++...+..+..+++|+.|++++|.+
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 66655555556666666666666666655444555566666666666654
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.43 E-value=2.6e-13 Score=110.26 Aligned_cols=131 Identities=17% Similarity=0.136 Sum_probs=90.7
Q ss_pred CcEEeccCCccCcchhhhhhCCCCCCEeeccCCCCCcchhhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEccC
Q 013171 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357 (448)
Q Consensus 278 L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 357 (448)
.+.+++.++.+..... . ..++|+.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++
T Consensus 9 ~~~l~~~~~~l~~~p~-~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPT-G--IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSSCCT-T--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCccCCC-C--CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 4567777666654322 1 235778888888877765555567777888888888877765555566777788888877
Q ss_pred CCCChhhHHHhhCCCCCCEEEcCCCCCChHHHHhhhCCCCCCEEeeCCCCCChh
Q 013171 358 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 411 (448)
Q Consensus 358 ~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 411 (448)
|.++......+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+...
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 777766555566777777777777777765555566777777777777776644
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.42 E-value=2e-13 Score=110.65 Aligned_cols=104 Identities=22% Similarity=0.251 Sum_probs=47.3
Q ss_pred CCCEEeccCCCCChHHHHHHhCCCCCcEeEccCCCCChhhHHHhhCCCCCCEEEcCCCCCChHHH-HhhhCCCCCCEEee
Q 013171 325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA-AYLRNFKNLRSLEI 403 (448)
Q Consensus 325 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l 403 (448)
+|+.|++++|.+.+. ..+..+++|+.|++++|.++......+..+++|+.|++++|.+..... ..+..+++|+.|++
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l 120 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCI 120 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEEC
T ss_pred CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEe
Confidence 444444444444332 233344444445554444443322223444555555555555543221 13445555555555
Q ss_pred CCCCCChhHHH---hhhcCCCCCeecccCC
Q 013171 404 CGGGLTDAGVK---HIKDLSSLTLLNLSQN 430 (448)
Q Consensus 404 ~~~~~~~~~~~---~l~~~~~L~~l~l~~~ 430 (448)
++|.+...... .+..+++|+.|++++|
T Consensus 121 ~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp CSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred cCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 55555432111 2455555555555555
No 136
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.38 E-value=3.6e-12 Score=117.52 Aligned_cols=325 Identities=15% Similarity=0.165 Sum_probs=200.2
Q ss_pred CCccEEEcccCCCChHHhHhccCCCCCCeEeccCC--cccChhHHHhhcCCCCCCEEeCCCCccccHHHHHHHhCCCCCc
Q 013171 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC--IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 134 (448)
Q Consensus 57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 134 (448)
..|+++.+..+ ++.....+|..|.+|+.+.+..+ ..++..+..+|..|.+|+.+.+..+ +......+|..+.+|+
T Consensus 64 ~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF~~c~~L~ 140 (394)
T 4gt6_A 64 YVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSEAFHHCEELD 140 (394)
T ss_dssp SCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTTTTTTCTTCC
T ss_pred CcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehhhhhhhhcccc
Confidence 35899999764 77677788999999999998653 2467777788889999999888764 2344456788999999
Q ss_pred EEecCCccccccchhhccCCCCCcEEeccCCCccCccccccCcCCCCccEEEecCCCCChHHHHhccCCCCCCeEecCCC
Q 013171 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 214 (448)
Q Consensus 135 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 214 (448)
.+.+.. .........+..+..|+.+.+... +......++.. ..|+.+.+.... .......+..+..+........
T Consensus 141 ~i~lp~-~~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~-~~l~~i~ip~~~-~~i~~~af~~c~~l~~~~~~~~ 215 (394)
T 4gt6_A 141 TVTIPE-GVTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTG-TALTQIHIPAKV-TRIGTNAFSECFALSTITSDSE 215 (394)
T ss_dssp EEECCT-TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTT-CCCSEEEECTTC-CEECTTTTTTCTTCCEEEECCS
T ss_pred cccccc-eeeeecccceecccccccccccce--eeEeccccccc-cceeEEEECCcc-cccccchhhhccccceeccccc
Confidence 999976 334445566888999999998752 44444455543 578888887542 2234456777888887776554
Q ss_pred CCchhHHHHHhcCCCCCEEEccCccCChhhHHhhhcCCCCcEEEccCCCcChhHHHHhhCCCCCcEEeccCCccCcchhh
Q 013171 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294 (448)
Q Consensus 215 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~ 294 (448)
.........+........... .+.....+..+.+... +.......|..+..|+.+.+... ....+..
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~~-~~~I~~~ 282 (394)
T 4gt6_A 216 SYPAIDNVLYEKSANGDYALI-----------RYPSQREDPAFKIPNG-VARIETHAFDSCAYLASVKMPDS-VVSIGTG 282 (394)
T ss_dssp SSCBSSSCEEEECTTSCEEEE-----------ECCTTCCCSEEECCTT-EEEECTTTTTTCSSCCEEECCTT-CCEECTT
T ss_pred ccccccceeeccccccccccc-----------ccccccccceEEcCCc-ceEcccceeeecccccEEecccc-cceecCc
Confidence 322110000011110000000 0111223334433221 11122334667777888877654 2335556
Q ss_pred hhhCCCCCCEeeccCCCCCcchhhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEccCCCCChhhHHHhhCCCCC
Q 013171 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 374 (448)
Q Consensus 295 ~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L 374 (448)
+|..++.|+.+.+.. .+.......|..|.+|+.+.+..+ ++.....+|.+|.+|+++.+.. .++..+..++.+|.+|
T Consensus 283 aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~-sv~~I~~~aF~~C~~L 359 (394)
T 4gt6_A 283 AFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPS-SVTKIPESAFSNCTAL 359 (394)
T ss_dssp TTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECT-TCCBCCGGGGTTCTTC
T ss_pred ccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECc-ccCEEhHhHhhCCCCC
Confidence 677778888888753 355555566778888888888653 5555556788888888888854 3555556778888889
Q ss_pred CEEEcCCCCCChHHHHhhhCCCCCCEEeeCCCCC
Q 013171 375 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 408 (448)
Q Consensus 375 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 408 (448)
+.+.+.++.. ....+..+..|+.+.+..+.+
T Consensus 360 ~~i~~~~~~~---~~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 360 NNIEYSGSRS---QWNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CEEEESSCHH---HHHTCBCCCCC----------
T ss_pred CEEEECCcee---ehhhhhccCCCCEEEeCCCCE
Confidence 9988887632 234566788888888776543
No 137
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.38 E-value=5.8e-13 Score=109.51 Aligned_cols=130 Identities=21% Similarity=0.207 Sum_probs=104.7
Q ss_pred cEEEccCCCcChhHHHHhhCCCCCcEEeccCCccCcchhh-hhhCCCCCCEeeccCCCCCcchhhhhcCCCCCCEEeccC
Q 013171 255 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV-NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333 (448)
Q Consensus 255 ~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 333 (448)
+.++++++.++.. +..+ .++++.|+++++.+....+. .+..+++|+.|++++|.+....+..+..+++|+.|++++
T Consensus 11 ~~l~~s~~~l~~i-p~~~--~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEI-PRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSC-CSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcC-ccCC--CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 6788888777543 2222 23889999999988766553 477889999999999998887778888889999999999
Q ss_pred CCCChHHHHHHhCCCCCcEeEccCCCCChhhHHHhhCCCCCCEEEcCCCCCChH
Q 013171 334 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 387 (448)
Q Consensus 334 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~ 387 (448)
|.+....+..+..+++|+.|++++|.++...+..+..+++|+.|++++|++...
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 988887777788889999999999999887777788889999999999987753
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.37 E-value=7.2e-13 Score=107.40 Aligned_cols=133 Identities=20% Similarity=0.206 Sum_probs=86.4
Q ss_pred CCCCCcEEeccCCccCcchhhhhhC-CCCCCEeeccCCCCCcchhhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcE
Q 013171 274 GLTNLESLNLDSCGIGDEGLVNLTG-LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352 (448)
Q Consensus 274 ~~~~L~~l~l~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 352 (448)
.+++|+.|++++|.+... +.+.. .++|+.|++++|.+... ..+..+++|+.|++++|.+....+..+..+++|+.
T Consensus 17 ~~~~L~~L~l~~n~l~~i--~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVI--ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp CTTSCEEEECTTSCCCSC--CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CcCCceEEEeeCCCCchh--HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 445666666666655432 12333 33677777777766653 45666777777777777776654444566777888
Q ss_pred eEccCCCCChhhH-HHhhCCCCCCEEEcCCCCCChHHHH---hhhCCCCCCEEeeCCCCCCh
Q 013171 353 LNLDARQITDTGL-AALTSLTGLTHLDLFGARITDSGAA---YLRNFKNLRSLEICGGGLTD 410 (448)
Q Consensus 353 L~l~~~~l~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~ 410 (448)
|++++|.+..... ..+..+++|+.|++++|++...... .+..+++|+.|++++|...+
T Consensus 93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 93 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred EECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 8888777765432 3566778888888888877654222 36778888888888877654
No 139
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.37 E-value=1.6e-12 Score=105.51 Aligned_cols=129 Identities=20% Similarity=0.124 Sum_probs=72.7
Q ss_pred cEEEccCCCcChhHHHHhhCCCCCcEEeccCCccCcchhhhhhCCCCCCEeeccCCCCCcchhhhhcCCCCCCEEeccCC
Q 013171 255 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334 (448)
Q Consensus 255 ~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 334 (448)
+.++++++.++... . ...++++.|+++++.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|
T Consensus 10 ~~l~~~~~~l~~~p-~--~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLTSVP-T--GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCSSCC-T--TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCccCC-C--CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 45555555544321 1 12245666666666655444444555666666666666665544444556666666666666
Q ss_pred CCChHHHHHHhCCCCCcEeEccCCCCChhhHHHhhCCCCCCEEEcCCCCCCh
Q 013171 335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386 (448)
Q Consensus 335 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~ 386 (448)
.+....+..+..+++|+.|++++|.++......+..+++|+.|++++|++..
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 6655444445556666666666666655444444556666666666666554
No 140
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.33 E-value=2.8e-12 Score=105.34 Aligned_cols=127 Identities=20% Similarity=0.237 Sum_probs=85.6
Q ss_pred cEEEccCCCcChhHHHHhhCCCCCcEEeccCCccCcchhhhhhCCCCCCEeeccCCCCCcchhhhhcCCCCCCEEeccCC
Q 013171 255 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334 (448)
Q Consensus 255 ~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 334 (448)
+.++++++.++.. +.. -.++++.|+++++.+... +..+..+++|+.|++++|.+....+..+..+++|+.|++++|
T Consensus 13 ~~l~~~~~~l~~i-p~~--~~~~l~~L~L~~n~i~~i-p~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVL-PKG--IPRDVTELYLDGNQFTLV-PKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSSC-CSC--CCTTCCEEECCSSCCCSC-CGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCcC-CCC--CCCCCCEEECCCCcCchh-HHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 4566666665532 211 124677777777776633 356667777777777777777666666777777777777777
Q ss_pred CCChHHHHHHhCCCCCcEeEccCCCCChhhHHHhhCCCCCCEEEcCCCCCC
Q 013171 335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385 (448)
Q Consensus 335 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~ 385 (448)
.+....+..+..+++|+.|++++|.++......+..+++|+.|++++|++.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 777666666777777777777777777655555667777777777777654
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.33 E-value=7.4e-14 Score=115.67 Aligned_cols=127 Identities=26% Similarity=0.281 Sum_probs=77.0
Q ss_pred hhhCCCCCCEeeccCCCCCcchhhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEccCCCCChhhHHHhhCCCCC
Q 013171 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 374 (448)
Q Consensus 295 ~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L 374 (448)
.+..+++|+.|++++|.+... + .+..+++|+.|++++|.+... +..+..+++|+.|++++|.++.. ..+..+++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l-~-~~~~l~~L~~L~l~~n~l~~l-~~~~~~~~~L~~L~L~~N~l~~l--~~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIKKI-ENLDAVADTLEELWISYNQIASL--SGIEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCC-C-CHHHHTTCCEEEEEEEEECSC-SSHHHHHHHCSEEEEEEEECCCH--HHHHHHHHS
T ss_pred HHhcCCCCCEEECCCCCCccc-c-ccccCCCCCEEECCCCCcccc-cchhhcCCcCCEEECcCCcCCcC--CccccCCCC
Confidence 445555666666666655542 2 445556666666666655432 22333446677777777766663 245666777
Q ss_pred CEEEcCCCCCChHHH-HhhhCCCCCCEEeeCCCCCChhHHH----------hhhcCCCCCeec
Q 013171 375 THLDLFGARITDSGA-AYLRNFKNLRSLEICGGGLTDAGVK----------HIKDLSSLTLLN 426 (448)
Q Consensus 375 ~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~----------~l~~~~~L~~l~ 426 (448)
+.|++++|.+.+... ..+..+++|+.|++++|.+.+..+. .+..+++|+.|+
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 777777777765433 4566677777777777776554332 356788888877
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.30 E-value=7.3e-14 Score=115.70 Aligned_cols=132 Identities=24% Similarity=0.310 Sum_probs=93.0
Q ss_pred HhhCCCCCcEEeccCCccCcchhhhhhCCCCCCEeeccCCCCCcchhhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCC
Q 013171 271 HLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 350 (448)
Q Consensus 271 ~l~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 350 (448)
.+..+++|+.|++++|.+.... .+..+++|+.|++++|.+.. .+..+..+++|+.|++++|.+.+.. .+..+++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~-l~~~~~~~~~L~~L~L~~N~l~~l~--~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIASLS--GIEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECS-CSSHHHHHHHCSEEEEEEEECCCHH--HHHHHHHS
T ss_pred HHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCccc-ccchhhcCCcCCEEECcCCcCCcCC--ccccCCCC
Confidence 5566677777777777665422 56667777888887777664 2334445578888888888777642 56677888
Q ss_pred cEeEccCCCCChhhH-HHhhCCCCCCEEEcCCCCCChHHHH----------hhhCCCCCCEEeeCCCCCC
Q 013171 351 KSLNLDARQITDTGL-AALTSLTGLTHLDLFGARITDSGAA----------YLRNFKNLRSLEICGGGLT 409 (448)
Q Consensus 351 ~~L~l~~~~l~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~----------~~~~~~~L~~L~l~~~~~~ 409 (448)
+.|++++|.++.... ..+..+++|+.|++++|++.+..+. .+..+++|+.|+ ++.++
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 888888888886543 5677888899999988887665432 367889999887 55544
No 143
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.28 E-value=1.1e-12 Score=129.89 Aligned_cols=152 Identities=20% Similarity=0.115 Sum_probs=90.5
Q ss_pred HHHHhcCCCCCEEEccCccCChhhHHhhhcCCCCcEEEccCCCcChhHHHHhhCCCCCcEEeccCCccCcchhhhhhCCC
Q 013171 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300 (448)
Q Consensus 221 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~l~~~~ 300 (448)
+..+..++.|+.|++++|.+.. .+..+..+++|+.|++++|.++ ..+..+..+++|+.|++++|.+. ..+..++.++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~ 293 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFN-ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCF 293 (727)
T ss_dssp -----CCCCCCEEECTTSCCSC-CCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGT
T ss_pred hhhhccCCCCcEEECCCCCCCC-CChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCC
Confidence 4556677778888887777663 3334446777888888777776 44555677778888888877776 3455667777
Q ss_pred CCCEeeccCCCCCcchhhhhcCCCCCCEEeccCCCCChHHHHHHhCCC-CCcEeEccCCCCChhhHHHhhCCCCCCEEEc
Q 013171 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS-SLKSLNLDARQITDTGLAALTSLTGLTHLDL 379 (448)
Q Consensus 301 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l 379 (448)
+|+.|++++|.+.. .+..+..+++|+.|+|++|.+....+..+.... .+..+++.+|.++.. -.+.|+.|++
T Consensus 294 ~L~~L~L~~N~l~~-lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~------~p~~l~~l~l 366 (727)
T 4b8c_D 294 QLKYFYFFDNMVTT-LPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIP------LPHERRFIEI 366 (727)
T ss_dssp TCSEEECCSSCCCC-CCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCC------CCCC------
T ss_pred CCCEEECCCCCCCc-cChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCc------CccccceeEe
Confidence 88888888887764 344577777888888888877776666554321 112245555555442 1234555555
Q ss_pred CCC
Q 013171 380 FGA 382 (448)
Q Consensus 380 ~~~ 382 (448)
+.|
T Consensus 367 ~~n 369 (727)
T 4b8c_D 367 NTD 369 (727)
T ss_dssp ---
T ss_pred ecc
Confidence 554
No 144
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.27 E-value=4.5e-13 Score=132.74 Aligned_cols=176 Identities=19% Similarity=0.115 Sum_probs=93.4
Q ss_pred HHhhhcCCCCcEEEccCCCcChhHHHHhhCCCCCcEEeccCCccCcchhhhhhCCCCCCEeeccCCCCCcchhhhhcCCC
Q 013171 245 CEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT 324 (448)
Q Consensus 245 ~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 324 (448)
+..+..++.|+.|++++|.+.. .+..+..+++|+.|++++|.+. ..+..+..+++|+.|+|++|.+.. .+..+..++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~ 293 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFN-ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCF 293 (727)
T ss_dssp -----CCCCCCEEECTTSCCSC-CCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSS-CCSSGGGGT
T ss_pred hhhhccCCCCcEEECCCCCCCC-CChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCc-cChhhcCCC
Confidence 4556677788888888877763 3334456778888888888776 445567777888888888887774 466677778
Q ss_pred CCCEEeccCCCCChHHHHHHhCCCCCcEeEccCCCCChhhHHHhhCCCC-CCEEEcCCCCCChHHHHhhhCCCCCCEEee
Q 013171 325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG-LTHLDLFGARITDSGAAYLRNFKNLRSLEI 403 (448)
Q Consensus 325 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 403 (448)
+|+.|+|++|.+... +..++.+++|+.|++++|.+++..+..+..... +..+++.+|.+.+.. ...|+.|++
T Consensus 294 ~L~~L~L~~N~l~~l-p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~------p~~l~~l~l 366 (727)
T 4b8c_D 294 QLKYFYFFDNMVTTL-PWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPL------PHERRFIEI 366 (727)
T ss_dssp TCSEEECCSSCCCCC-CSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCC------CCC------
T ss_pred CCCEEECCCCCCCcc-ChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcC------ccccceeEe
Confidence 888888888877643 444777788888888888887765555543221 123566777665433 345667777
Q ss_pred CCC--------CCChhHHHhhhcCCCCCeecccCC
Q 013171 404 CGG--------GLTDAGVKHIKDLSSLTLLNLSQN 430 (448)
Q Consensus 404 ~~~--------~~~~~~~~~l~~~~~L~~l~l~~~ 430 (448)
..| .+....+..+..+..++...++.|
T Consensus 367 ~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~N 401 (727)
T 4b8c_D 367 NTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYN 401 (727)
T ss_dssp -----------------------------------
T ss_pred ecccccccccCCccccccchhhcccccceeeeecc
Confidence 666 222222223334455555555555
No 145
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.27 E-value=4.1e-11 Score=107.86 Aligned_cols=146 Identities=21% Similarity=0.284 Sum_probs=97.0
Q ss_pred hhhCCCCCCEeeccCCCCCcchhhhhcCCCCCCEEeccCCCCChHHHHHHh--CCCCCcEeEccC--CC-CChhhH----
Q 013171 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA--GLSSLKSLNLDA--RQ-ITDTGL---- 365 (448)
Q Consensus 295 ~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~--~~-l~~~~~---- 365 (448)
.+..+|+|+.|.+.++.-... + .+. .++|++|.+..|.+.......+. .+|+|++|+|+. +. ..+...
T Consensus 167 ll~~~P~L~~L~L~g~~~l~l-~-~~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNLSI-G-KKP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp HHHTCTTCCEEEEECCBTCBC-C-SCB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred HHhcCCCCcEEEEeCCCCcee-c-ccc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 345667788888776621111 1 122 57888888888887776666665 678888888752 11 111001
Q ss_pred HHh--hCCCCCCEEEcCCCCCChHHHHhhh---CCCCCCEEeeCCCCCChhHHHhh----hcCCCCCeecccCCCCCCHH
Q 013171 366 AAL--TSLTGLTHLDLFGARITDSGAAYLR---NFKNLRSLEICGGGLTDAGVKHI----KDLSSLTLLNLSQNCNLTDK 436 (448)
Q Consensus 366 ~~l--~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~l----~~~~~L~~l~l~~~~~l~~~ 436 (448)
..+ ..+|+|+.|.+.+|.+.+..+..+. .+++|++|+++.|.+.+.++..+ ..+++|+.|++++| .+++.
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n-~i~d~ 322 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN-YLSDE 322 (362)
T ss_dssp GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB-BCCHH
T ss_pred HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC-cCCHH
Confidence 112 2578889998888888765544442 46788899998888887655444 45688899999888 68888
Q ss_pred HHHHHHhh
Q 013171 437 TLELISGI 444 (448)
Q Consensus 437 ~~~~l~~~ 444 (448)
+++.+.++
T Consensus 323 ~~~~l~~a 330 (362)
T 2ra8_A 323 MKKELQKS 330 (362)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888764
No 146
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.24 E-value=2.2e-11 Score=111.78 Aligned_cols=147 Identities=18% Similarity=0.158 Sum_probs=85.8
Q ss_pred hhCCCCCcEEeccCCccCcchhhhhhCCCCCCEeeccCCCCCcchhhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCc
Q 013171 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351 (448)
Q Consensus 272 l~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 351 (448)
+..+.+++.+.+... +...+..++..+..|+.+.+..+ +.......+..+.+|+.+.+... +......+|.++++|+
T Consensus 213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~ 289 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLT 289 (379)
T ss_dssp TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCC
T ss_pred cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccc
Confidence 344555666655432 33344445555666666666543 44444455566666666666432 3333345566667777
Q ss_pred EeEccCCCCChhhHHHhhCCCCCCEEEcCCCCCChHHHHhhhCCCCCCEEeeCCCCCChhHHHhhhcCCCCC
Q 013171 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 423 (448)
Q Consensus 352 ~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 423 (448)
.+.+.++.++.....++.+|.+|+.+.+.++ ++.+...+|.+|++|+.+.+..+ ++.+...+|.+|..++
T Consensus 290 ~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~~~ 359 (379)
T 4h09_A 290 KVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSITK 359 (379)
T ss_dssp EEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSCCC
T ss_pred cccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCCCc
Confidence 7777666666555566667777777777543 55555666777777777777553 5555555666664443
No 147
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.18 E-value=1.1e-10 Score=107.04 Aligned_cols=314 Identities=15% Similarity=0.144 Sum_probs=164.3
Q ss_pred CCccEEEcccCCCChHHhHhccCCCCCCeEeccCCcccChhHHHhhcCCCCCCEEeCCCCccccHHHHHHHhCCCCCcEE
Q 013171 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136 (448)
Q Consensus 57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 136 (448)
.+++++.+... ++.+...+|..|.+|+.+.|.. .++.....+|..+ .|+.+.+..+ +......+|..+ +|+.+
T Consensus 46 ~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~--~v~~Ig~~aF~~c-~l~~i~~~~~--l~~I~~~aF~~~-~L~~i 118 (379)
T 4h09_A 46 DRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAS--TVTSIGDGAFADT-KLQSYTGMER--VKKFGDYVFQGT-DLDDF 118 (379)
T ss_dssp GGCSEEEECTT-EEEECTTTTTTCTTCCEEEECT--TCCEECTTTTTTC-CCCEEEECTT--CCEECTTTTTTC-CCSEE
T ss_pred cCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCC--cceEechhhhcCC-CCceEECCce--eeEeccceeccC-Ccccc
Confidence 45666666532 4444445566666666666654 3555555555555 4555555432 112222334333 56666
Q ss_pred ecCCccccccchhhccCCCCCcEEeccCCCccCccccccCcCCCCccEEEecCCCCChHHHHhccCCCCCCeEecCCCCC
Q 013171 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216 (448)
Q Consensus 137 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 216 (448)
.+... ........+..+ +++.+.+.. .+.......+..+..++.+.+.............. .. ....
T Consensus 119 ~lp~~-~~~i~~~~F~~~-~l~~~~~~~--~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~-~~--------~~~~ 185 (379)
T 4h09_A 119 EFPGA-TTEIGNYIFYNS-SVKRIVIPK--SVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVL-YN--------KNKT 185 (379)
T ss_dssp ECCTT-CCEECTTTTTTC-CCCEEEECT--TCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEE-EE--------TTSS
T ss_pred cCCCc-cccccccccccc-eeeeeeccc--eeeccccchhcccccccccccccccceeeccccee-cc--------cccc
Confidence 65442 122222223332 344443332 12223333444555555555443221100000000 00 0000
Q ss_pred chhHHHHHhcCCCCCEEEccCccCChhhHHhhhcCCCCcEEEccCCCcChhHHHHhhCCCCCcEEeccCCccCcchhhhh
Q 013171 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296 (448)
Q Consensus 217 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~l 296 (448)
....+..+..+..+.+.... .......+..+.+|+.+.+..+ +.......+..+..|+.+.+..+ +...+..+|
T Consensus 186 ---~~~~~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF 259 (379)
T 4h09_A 186 ---ILESYPAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLL 259 (379)
T ss_dssp ---EEEECCTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTT
T ss_pred ---eeccccccccccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCcccc
Confidence 00012233444444443321 1112233445566777766543 22222344666777888877654 455556667
Q ss_pred hCCCCCCEeeccCCCCCcchhhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEccCCCCChhhHHHhhCCCCCCE
Q 013171 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 376 (448)
Q Consensus 297 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~ 376 (448)
..+..|+.+.+... +.......+..|++|+.+.+..+.+......+|.+|.+|+.+.+.. .++..+..++.+|.+|+.
T Consensus 260 ~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~-~l~~I~~~aF~~C~~L~~ 337 (379)
T 4h09_A 260 QNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT-ALKTIQVYAFKNCKALST 337 (379)
T ss_dssp TTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCC
T ss_pred ceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCc-cccEEHHHHhhCCCCCCE
Confidence 77788888887653 4444556677888888888877777766667788888888888854 355555667788888888
Q ss_pred EEcCCCCCChHHHHhhhCCCCCC
Q 013171 377 LDLFGARITDSGAAYLRNFKNLR 399 (448)
Q Consensus 377 L~l~~~~~~~~~~~~~~~~~~L~ 399 (448)
+.+..+ ++.+...+|.+|+.++
T Consensus 338 i~ip~~-v~~I~~~aF~~c~~~~ 359 (379)
T 4h09_A 338 ISYPKS-ITLIESGAFEGSSITK 359 (379)
T ss_dssp CCCCTT-CCEECTTTTTTSSCCC
T ss_pred EEECCc-cCEEchhHhhCCCCCc
Confidence 888654 6666667777775443
No 148
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.18 E-value=4.7e-11 Score=94.15 Aligned_cols=89 Identities=21% Similarity=0.344 Sum_probs=61.1
Q ss_pred CCcEeEccCCCCChhhHHHhhCCCCCCEEEcCCC-CCChHHHHhhhCC----CCCCEEeeCCCC-CChhHHHhhhcCCCC
Q 013171 349 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNF----KNLRSLEICGGG-LTDAGVKHIKDLSSL 422 (448)
Q Consensus 349 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~----~~L~~L~l~~~~-~~~~~~~~l~~~~~L 422 (448)
.|++|++++|.+++.+...+..+++|+.|+|++| .+++.+...+... ++|+.|++++|. +++.+...++++++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 4666666666666666666666777777777776 4666666666543 467777777774 777777777777777
Q ss_pred CeecccCCCCCCHHH
Q 013171 423 TLLNLSQNCNLTDKT 437 (448)
Q Consensus 423 ~~l~l~~~~~l~~~~ 437 (448)
+.|++++|+.+++.+
T Consensus 142 ~~L~L~~c~~Itd~g 156 (176)
T 3e4g_A 142 KYLFLSDLPGVKEKE 156 (176)
T ss_dssp CEEEEESCTTCCCHH
T ss_pred CEEECCCCCCCCchH
Confidence 777777777777755
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.13 E-value=7e-10 Score=99.87 Aligned_cols=82 Identities=22% Similarity=0.299 Sum_probs=42.0
Q ss_pred CCCCcEeEccCCCCChhhHHHhh---CCCCCCEEEcCCCCCChHHHHhh----hCCCCCCEEeeCCCCCChhHHHhhhc-
Q 013171 347 LSSLKSLNLDARQITDTGLAALT---SLTGLTHLDLFGARITDSGAAYL----RNFKNLRSLEICGGGLTDAGVKHIKD- 418 (448)
Q Consensus 347 ~~~L~~L~l~~~~l~~~~~~~l~---~~~~L~~L~l~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~l~~- 418 (448)
+|+|+.|.+.+|.+.+.....+. .+++|+.|+++.|.+.+.++..+ ..+++|+.|++++|.+++.....+..
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a 330 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS 330 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence 45555555555555443322222 34556666666665555433332 33466666666666666555555443
Q ss_pred CCCCCeecccCC
Q 013171 419 LSSLTLLNLSQN 430 (448)
Q Consensus 419 ~~~L~~l~l~~~ 430 (448)
+ ...++++++
T Consensus 331 l--g~~~~~~~~ 340 (362)
T 2ra8_A 331 L--PMKIDVSDS 340 (362)
T ss_dssp C--CSEEECCSB
T ss_pred c--CCEEEecCC
Confidence 2 334555554
No 150
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.12 E-value=2.7e-11 Score=97.28 Aligned_cols=107 Identities=20% Similarity=0.177 Sum_probs=86.2
Q ss_pred CCCEeeccCCCCCcchhhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEccCCCCChhhHHHhhCCCCCCEEEcC
Q 013171 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 380 (448)
Q Consensus 301 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~ 380 (448)
..+.++++++.+... +..+ .++|+.|++++|.+....+..+..+++|+.|++++|.++......+..+++|+.|+++
T Consensus 10 ~~~~l~~s~n~l~~i-p~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLASV-PTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCSSC-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCcc-CccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 357888888887763 3333 3788999999998888777778888999999999998887766667788899999999
Q ss_pred CCCCChHHHHhhhCCCCCCEEeeCCCCCCh
Q 013171 381 GARITDSGAAYLRNFKNLRSLEICGGGLTD 410 (448)
Q Consensus 381 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 410 (448)
+|++++..+..+..+++|+.|++++|.+..
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 998888766678888999999999988763
No 151
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.09 E-value=5e-11 Score=95.98 Aligned_cols=106 Identities=17% Similarity=0.191 Sum_probs=82.0
Q ss_pred CCEeeccCCCCCcchhhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEccCCCCChhhHHHhhCCCCCCEEEcCC
Q 013171 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 381 (448)
Q Consensus 302 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~ 381 (448)
-+.++++++.+... +..+ .++|+.|++++|.+....+..+..+++|+.|++++|.++......+..+++|+.|++++
T Consensus 14 ~~~l~~~~n~l~~i-P~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLASV-PAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCSSC-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCCcc-CCCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 36788888877653 3333 27888899988888877677788888888888888888876555667888888888888
Q ss_pred CCCChHHHHhhhCCCCCCEEeeCCCCCCh
Q 013171 382 ARITDSGAAYLRNFKNLRSLEICGGGLTD 410 (448)
Q Consensus 382 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 410 (448)
|++....+..+..+++|+.|++++|.+..
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred CccceeCHHHhccccCCCEEEeCCCCccc
Confidence 88887666667888888888888888763
No 152
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.07 E-value=2.4e-10 Score=90.10 Aligned_cols=90 Identities=21% Similarity=0.320 Sum_probs=76.2
Q ss_pred CCccEEEcccCCCChHHhHhccCCCCCCeEeccCCcccChhHHHhhcCC----CCCCEEeCCCCccccHHHHHHHhCCCC
Q 013171 57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGL----SNLTSLSFRRNNAITAQGMKAFAGLIN 132 (448)
Q Consensus 57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~----~~L~~L~l~~~~~~~~~~~~~~~~l~~ 132 (448)
-+|++||++++.+++.....++.|++|++|+|++|..+++.....+..+ ++|++|++++|..+++.....+.++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 3689999998889888888888999999999999988999888888775 479999999988778888888888888
Q ss_pred CcEEecCCcccccc
Q 013171 133 LVKLDLERCTRIHG 146 (448)
Q Consensus 133 L~~L~l~~~~~~~~ 146 (448)
|+.|++++|..+..
T Consensus 141 L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 141 LKYLFLSDLPGVKE 154 (176)
T ss_dssp CCEEEEESCTTCCC
T ss_pred CCEEECCCCCCCCc
Confidence 88888888865543
No 153
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.07 E-value=1.6e-10 Score=92.67 Aligned_cols=107 Identities=18% Similarity=0.193 Sum_probs=88.1
Q ss_pred CCcEEeccCCccCcchhhhhhCCCCCCEeeccCCCCCcchhhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEcc
Q 013171 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356 (448)
Q Consensus 277 ~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 356 (448)
..+.++++++.+.... ..+ .++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|+++
T Consensus 10 ~~~~l~~s~n~l~~ip-~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLASVP-TGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCSSCC-SCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCccC-ccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 3577888888776533 222 3789999999999988777788889999999999999888777777889999999999
Q ss_pred CCCCChhhHHHhhCCCCCCEEEcCCCCCCh
Q 013171 357 ARQITDTGLAALTSLTGLTHLDLFGARITD 386 (448)
Q Consensus 357 ~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~ 386 (448)
+|.++......+..+++|+.|++++|++..
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 999988766678889999999999998764
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.06 E-value=2.5e-09 Score=86.89 Aligned_cols=118 Identities=19% Similarity=0.162 Sum_probs=78.8
Q ss_pred hhcCCCCCCEEeccCC-CCChHHHHH----HhCCCCCcEeEccCCCCChhhHHH----hhCCCCCCEEEcCCCCCChHH-
Q 013171 319 HLSGLTNLESINLSFT-GISDGSLRK----LAGLSSLKSLNLDARQITDTGLAA----LTSLTGLTHLDLFGARITDSG- 388 (448)
Q Consensus 319 ~l~~~~~L~~L~l~~~-~~~~~~~~~----~~~~~~L~~L~l~~~~l~~~~~~~----l~~~~~L~~L~l~~~~~~~~~- 388 (448)
.+...++|++|++++| .+.+..... +...++|++|++++|.+.+.+... +...++|++|++++|.+.+.+
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3455666777777766 666544333 334567777777777777655433 345577888888888877754
Q ss_pred ---HHhhhCCCCCCEEee--CCCCCChhHHHh----hhcCCCCCeecccCCCCCCHHH
Q 013171 389 ---AAYLRNFKNLRSLEI--CGGGLTDAGVKH----IKDLSSLTLLNLSQNCNLTDKT 437 (448)
Q Consensus 389 ---~~~~~~~~~L~~L~l--~~~~~~~~~~~~----l~~~~~L~~l~l~~~~~l~~~~ 437 (448)
...+...+.|++|++ ++|.+.+.+... +...++|++|++++| .+++.+
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n-~i~~~~ 167 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT-QQGPRL 167 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS-SHHHHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC-CCChHH
Confidence 344566778888888 778887665443 455688888888888 677665
No 155
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.03 E-value=2.6e-10 Score=91.79 Aligned_cols=106 Identities=16% Similarity=0.206 Sum_probs=86.2
Q ss_pred CcEEeccCCccCcchhhhhhCCCCCCEeeccCCCCCcchhhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEccC
Q 013171 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357 (448)
Q Consensus 278 L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 357 (448)
-+.++++++.+.... ..+ .++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++
T Consensus 14 ~~~l~~~~n~l~~iP-~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLASVP-AGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCSSCC-SCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCCccC-CCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 367888888776433 223 37899999999999887777888899999999999988887666678889999999999
Q ss_pred CCCChhhHHHhhCCCCCCEEEcCCCCCCh
Q 013171 358 RQITDTGLAALTSLTGLTHLDLFGARITD 386 (448)
Q Consensus 358 ~~l~~~~~~~l~~~~~L~~L~l~~~~~~~ 386 (448)
|.++......+..+++|+.|++++|++..
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred CccceeCHHHhccccCCCEEEeCCCCccc
Confidence 99987655668889999999999998774
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.86 E-value=2.4e-08 Score=81.02 Aligned_cols=116 Identities=20% Similarity=0.160 Sum_probs=74.6
Q ss_pred hhCCCCCCEeeccCC-CCCcchh----hhhcCCCCCCEEeccCCCCChHHHHHH----hCCCCCcEeEccCCCCChhhHH
Q 013171 296 LTGLCNLKCLELSDT-QVGSSGL----RHLSGLTNLESINLSFTGISDGSLRKL----AGLSSLKSLNLDARQITDTGLA 366 (448)
Q Consensus 296 l~~~~~L~~L~l~~~-~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~L~~L~l~~~~l~~~~~~ 366 (448)
+...+.|++|++++| .+.+... ..+...++|++|+|++|.+.+.....+ ...++|++|++++|.+.+.+..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 334455555555555 5544332 223455677777777777766554333 3457788888888888776543
Q ss_pred ----HhhCCCCCCEEEc--CCCCCChHHH----HhhhCCCCCCEEeeCCCCCChh
Q 013171 367 ----ALTSLTGLTHLDL--FGARITDSGA----AYLRNFKNLRSLEICGGGLTDA 411 (448)
Q Consensus 367 ----~l~~~~~L~~L~l--~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~ 411 (448)
.+...++|++|++ ++|.+...+. ..+...++|+.|++++|.+...
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~ 166 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPR 166 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHH
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChH
Confidence 3446677888888 7788887653 3445668888888888887644
No 157
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.84 E-value=2.8e-09 Score=96.51 Aligned_cols=104 Identities=20% Similarity=0.242 Sum_probs=79.1
Q ss_pred CEeeccCC-CCCcchhhhhcCCCCCCEEeccC-CCCChHHHHHHhCCCCCcEeEccCCCCChhhHHHhhCCCCCCEEEcC
Q 013171 303 KCLELSDT-QVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 380 (448)
Q Consensus 303 ~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~ 380 (448)
..++..++ .+.. .|. +..+++|+.|+|++ |.+....+..|..+++|+.|+|++|.++...+..+.++++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 34566666 6665 344 77778888888885 88887776778888888888888888888767777888888888888
Q ss_pred CCCCChHHHHhhhCCCCCCEEeeCCCCCC
Q 013171 381 GARITDSGAAYLRNFKNLRSLEICGGGLT 409 (448)
Q Consensus 381 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 409 (448)
+|++....+..+..++ |+.|++.+|.+.
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 8888876555555555 888888888775
No 158
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.72 E-value=1.3e-08 Score=92.08 Aligned_cols=105 Identities=21% Similarity=0.235 Sum_probs=87.6
Q ss_pred cEEeccCC-ccCcchhhhhhCCCCCCEeeccC-CCCCcchhhhhcCCCCCCEEeccCCCCChHHHHHHhCCCCCcEeEcc
Q 013171 279 ESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356 (448)
Q Consensus 279 ~~l~l~~~-~~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 356 (448)
..++.++. .+.. .+. +..+++|+.|+|++ |.+....+..|..+++|+.|+|++|.+....+..|..+++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35677776 6664 344 88888999999996 99988777889999999999999999998888889999999999999
Q ss_pred CCCCChhhHHHhhCCCCCCEEEcCCCCCCh
Q 013171 357 ARQITDTGLAALTSLTGLTHLDLFGARITD 386 (448)
Q Consensus 357 ~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~ 386 (448)
+|.++......+..++ |+.|++.+|.+..
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 9999876555555555 9999999998774
No 159
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.22 E-value=1.9e-05 Score=63.52 Aligned_cols=111 Identities=15% Similarity=0.146 Sum_probs=86.6
Q ss_pred hcCCCCCCEEeccCC-CCChHHHH----HHhCCCCCcEeEccCCCCChhhHHH----hhCCCCCCEEEcCCCCCChHHHH
Q 013171 320 LSGLTNLESINLSFT-GISDGSLR----KLAGLSSLKSLNLDARQITDTGLAA----LTSLTGLTHLDLFGARITDSGAA 390 (448)
Q Consensus 320 l~~~~~L~~L~l~~~-~~~~~~~~----~~~~~~~L~~L~l~~~~l~~~~~~~----l~~~~~L~~L~l~~~~~~~~~~~ 390 (448)
+...+.|+.|+|+++ .+.+.+.. ++..-..|+.|++++|.+.+.+... +.....|+.|+|++|.+...+..
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 456689999999986 88876544 4456689999999999999876544 44668899999999999987655
Q ss_pred h----hhCCCCCCEEeeCCC---CCChh----HHHhhhcCCCCCeecccCC
Q 013171 391 Y----LRNFKNLRSLEICGG---GLTDA----GVKHIKDLSSLTLLNLSQN 430 (448)
Q Consensus 391 ~----~~~~~~L~~L~l~~~---~~~~~----~~~~l~~~~~L~~l~l~~~ 430 (448)
. +..-+.|+.|++++| .+... +.+.+...++|+.|+++.|
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 4 466678999999875 55654 3455677899999999876
No 160
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.19 E-value=2.3e-05 Score=63.00 Aligned_cols=114 Identities=18% Similarity=0.207 Sum_probs=87.7
Q ss_pred hhCCCCCCEeeccCC-CCCcchh----hhhcCCCCCCEEeccCCCCChHHHHHHh----CCCCCcEeEccCCCCChhhHH
Q 013171 296 LTGLCNLKCLELSDT-QVGSSGL----RHLSGLTNLESINLSFTGISDGSLRKLA----GLSSLKSLNLDARQITDTGLA 366 (448)
Q Consensus 296 l~~~~~L~~L~l~~~-~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~~~~~~----~~~~L~~L~l~~~~l~~~~~~ 366 (448)
+..-+.|+.|++.++ .+.+.+. ..+...+.|+.|+|++|.+.+.....++ .-..|++|+|++|.+.+.+..
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 445678999999985 7776543 3456778999999999999987655544 568999999999999987765
Q ss_pred Hh----hCCCCCCEEEcCCC---CCChHH----HHhhhCCCCCCEEeeCCCCCC
Q 013171 367 AL----TSLTGLTHLDLFGA---RITDSG----AAYLRNFKNLRSLEICGGGLT 409 (448)
Q Consensus 367 ~l----~~~~~L~~L~l~~~---~~~~~~----~~~~~~~~~L~~L~l~~~~~~ 409 (448)
.+ .....|++|+|+++ .+...+ .+.+..-+.|+.|+++.+.+.
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 44 45678999999865 455543 455677799999999887654
No 161
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.06 E-value=2.2e-06 Score=72.95 Aligned_cols=80 Identities=23% Similarity=0.255 Sum_probs=49.7
Q ss_pred CCCCCcEeEccCCCCChhh--HHHhhCCCCCCEEEcCCCCCChHHHHhhhCCC--CCCEEeeCCCCCChhH-------HH
Q 013171 346 GLSSLKSLNLDARQITDTG--LAALTSLTGLTHLDLFGARITDSGAAYLRNFK--NLRSLEICGGGLTDAG-------VK 414 (448)
Q Consensus 346 ~~~~L~~L~l~~~~l~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~-------~~ 414 (448)
++++|+.|++++|.++... +..+..+++|+.|+|++|.+.+. ..+..++ +|+.|++.+|.+.+.. ..
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 4677777777777776522 23445677777777777777654 2233333 7777777777776421 23
Q ss_pred hhhcCCCCCeecc
Q 013171 415 HIKDLSSLTLLNL 427 (448)
Q Consensus 415 ~l~~~~~L~~l~l 427 (448)
.+..+|+|+.||-
T Consensus 246 il~~~P~L~~LDg 258 (267)
T 3rw6_A 246 IRERFPKLLRLDG 258 (267)
T ss_dssp HHHHCTTCCEESS
T ss_pred HHHHCcccCeECC
Confidence 4567788877764
No 162
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.96 E-value=2.8e-05 Score=66.21 Aligned_cols=83 Identities=20% Similarity=0.240 Sum_probs=48.8
Q ss_pred hcCCCccEEEcccCCCCh--HHhHhccCCCCCCeEeccCCcccChh-HHHhhcCCCCCCEEeCCCCcccc------HHHH
Q 013171 54 SQGSSLLSVDLSGSDVTD--SGLIHLKDCSNLQSLDFNFCIQISDG-GLEHLRGLSNLTSLSFRRNNAIT------AQGM 124 (448)
Q Consensus 54 ~~~~~l~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~------~~~~ 124 (448)
..+++|++|+|++|++++ .++..+..+++|+.|+|++| .+.+. ....+..+ +|++|++++|.... ....
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHH
Confidence 456778888888777766 33345567777777777776 44443 23333333 77777777776422 1112
Q ss_pred HHHhCCCCCcEEec
Q 013171 125 KAFAGLINLVKLDL 138 (448)
Q Consensus 125 ~~~~~l~~L~~L~l 138 (448)
..+..+|+|+.|+-
T Consensus 245 ~il~~~P~L~~LDg 258 (267)
T 3rw6_A 245 AIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHCTTCCEESS
T ss_pred HHHHHCcccCeECC
Confidence 34455666666653
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.46 E-value=0.0021 Score=48.07 Aligned_cols=55 Identities=20% Similarity=0.184 Sum_probs=35.3
Q ss_pred EeEccCCCCC--hhhHHHhhCCCCCCEEEcCCCCCChHHHHhhhCCCCCCEEeeCCCCCC
Q 013171 352 SLNLDARQIT--DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 409 (448)
Q Consensus 352 ~L~l~~~~l~--~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 409 (448)
.++.+++.++ .. +.. -.++|+.|+|++|.++...+..|..+++|+.|++.+|.+.
T Consensus 12 ~v~Cs~~~L~~~~v-P~~--lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASL-PTA--FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTS-CSC--CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccC-CCC--CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5556666665 32 211 1245778888888777766666777777777777777653
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.04 E-value=0.063 Score=39.93 Aligned_cols=38 Identities=18% Similarity=0.120 Sum_probs=31.4
Q ss_pred CCCcEeEccCCCCChhhHHHhhCCCCCCEEEcCCCCCC
Q 013171 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385 (448)
Q Consensus 348 ~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~ 385 (448)
++|+.|+|++|.++......+..+++|+.|+|.+|.+.
T Consensus 31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 47889999999888876777788888999999888664
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=83.26 E-value=0.51 Score=32.98 Aligned_cols=46 Identities=11% Similarity=0.021 Sum_probs=27.7
Q ss_pred CChHHhHhccCCCCCCeEeccCCcccChhHHHhhcCCCCCCEEeCCCC
Q 013171 69 VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116 (448)
Q Consensus 69 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 116 (448)
++.+....|..|.+|+.+.|.. .++.+...+|..|.+|+.+.+.+.
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~--~v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQP--NIGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECT--TSSCCCTTSSTTCTTCCCEEECCS
T ss_pred cCEecHHHhcCCCCCcEEEcCC--chheEcHHHHhccCCccEEEEcCC
Confidence 4444445566666666666655 455555666666666666666553
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=81.12 E-value=0.45 Score=33.24 Aligned_cols=47 Identities=11% Similarity=0.077 Sum_probs=32.0
Q ss_pred CCChhhHHHhhCCCCCCEEEcCCCCCChHHHHhhhCCCCCCEEeeCCC
Q 013171 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 406 (448)
Q Consensus 359 ~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 406 (448)
.++.....+|.+|.+|+.+.+-.+ ++.++..+|.+|.+|+.+.+...
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 344444456677788888888654 55566677788888888887663
No 167
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=23.22 E-value=7.8 Score=36.78 Aligned_cols=39 Identities=8% Similarity=0.020 Sum_probs=29.0
Q ss_pred CchHHHHHHHHHHHhcCccCHHHHHHhcCCccceeecCCC
Q 013171 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQY 41 (448)
Q Consensus 2 ~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 41 (448)
.++++++ ||.+|+.++++++........|.+|+++.+..
T Consensus 426 ~~~~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a 464 (549)
T 2a5y_B 426 LDDEVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFL 464 (549)
T ss_dssp CTHHHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHH
T ss_pred CHHHHHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHH
Confidence 3678888 99999999999976543334577888876433
Done!