BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013172
(448 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OGK|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGL|B Chain B, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|D Chain D, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|F Chain F, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|H Chain H, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|J Chain J, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|L Chain L, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|N Chain N, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|P Chain P, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGM|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
Length = 592
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 95/420 (22%), Positives = 164/420 (39%), Gaps = 89/420 (21%)
Query: 42 LTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLD-SEFIHNKG-- 98
++D L LA L++L + C T L ++ +HC+ ++TL ++ S F G
Sbjct: 124 VSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKW 183
Query: 99 VHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALY--SFQQFTDKGLHAVGKG 156
+H +AQ SLE+L Y F + + K L + +
Sbjct: 184 LHELAQ-------------------------HNTSLEVLNFYMTEFAKISPKDLETIARN 218
Query: 157 CKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELA 216
C+ L ++ + D L +G A +E +N +IG F R L L
Sbjct: 219 CRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLN--EDIGMPEKYMNLVFPRKLCRLG 276
Query: 217 LLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIG 276
L Y L + L L+ + + + C++ + C NL+ L R IG
Sbjct: 277 LSYMGPNEMPILFPFAAQIRKLDLLYAL----LETEDHCTLIQKCPNLEVLETRNV--IG 330
Query: 277 NNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAK 336
+ G+ + ++C L L + +R DE + +G + G++A+A+
Sbjct: 331 DRGLEVLAQYCKQLKRLRI---ERGADEQGMEDEEGL------------VSQRGLIALAQ 375
Query: 337 GCPELNYLDVSV--------------LQNLGDQAMVELGK------------------GC 364
GC EL Y+ V V L+NL D +V L + GC
Sbjct: 376 GCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGC 435
Query: 365 PLLKDVVLSHCRQ--ITDVGLSHLVKNCRMLESCHMVYCPGITAAGVATVVSGCANIKKV 422
L+ + RQ +TD+GLS++ + + + Y G + G+ GC N++K+
Sbjct: 436 KKLRRFAF-YLRQGGLTDLGLSYIGQYSPNVRWMLLGYV-GESDEGLMEFSRGCPNLQKL 493
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 100/460 (21%), Positives = 181/460 (39%), Gaps = 102/460 (22%)
Query: 16 VGDQGLAAVGKV-CNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSL 74
V D L + K + LE L L C G T GL+
Sbjct: 124 VSDLDLDRLAKARADDLETLKLDKCSGFTTDGLL-------------------------- 157
Query: 75 EAVGSHCKSLETLSL-DSEFIHNKG--VHAVAQGCPLLRVLKLQCINVTDEALVAVGNQC 131
++ +HC+ ++TL + +S F G +H +AQ
Sbjct: 158 -SIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ-------------------------HN 191
Query: 132 LSLELLALY--SFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHL 189
SLE+L Y F + + K L + + C+ L ++ + D L +G A +E
Sbjct: 192 TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGG 251
Query: 190 EINGCHNIGT----MGLESIGKFCR--------NLTELALLYCQRIGNL----ALLEVGR 233
+N +IG M L K CR N + + +I L ALLE
Sbjct: 252 SLN--EDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETED 309
Query: 234 GCKSLQA---LHLVDCSS-IGDDAICSIAEGCQNLKKLHIRRCYK----------IGNNG 279
C +Q L +++ + IGD + +A+ C+ LK+L I R + G
Sbjct: 310 HCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRG 369
Query: 280 IVAVGEHCNSLTELSLRFCDRVGDEALISIGQG----CSLQHLNVSGCHQIG----DAGI 331
++A+ + C L +++ D + +E+L SIG C + + + +I D G+
Sbjct: 370 LIALAQGCQELEYMAVYVSD-ITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGV 428
Query: 332 MAIAKGCPELNYLDVSVLQ-NLGDQAMVELGKGCPLLKDVVLSHCRQITDVGLSHLVKNC 390
++ GC +L + Q L D + +G+ P ++ ++L + + +D GL + C
Sbjct: 429 RSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGE-SDEGLMEFSRGC 487
Query: 391 RMLESCHMVYCPGITAAGVATVVSGCANIKKVMVEKWKVS 430
L+ M C + +A V+ +++ + V+ ++ S
Sbjct: 488 PNLQKLEMRGC-CFSERAIAAAVTKLPSLRYLWVQGYRAS 526
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 107/231 (46%), Gaps = 26/231 (11%)
Query: 16 VGDQGLAAVGKVCNQLEDLNLRF---------CEGL-TDTGLVDLAHGCGKSLKSLGIAA 65
+GD+GL + + C QL+ L + EGL + GL+ LA GC + L+ + +
Sbjct: 329 IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGC-QELEYMAVYV 387
Query: 66 CVKITDVSLEAVGSHCKSL---ETLSLDSE-----FIHNKGVHAVAQGCPLLR--VLKLQ 115
IT+ SLE++G++ K+L + LD E + GV ++ GC LR L+
Sbjct: 388 S-DITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLR 446
Query: 116 CINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMG 175
+TD L +G ++ + L + +D+GL +GC L+ L + C F S+
Sbjct: 447 QGGLTDLGLSYIGQYSPNVRWMLL-GYVGESDEGLMEFSRGCPNLQKLEMRGCCF-SERA 504
Query: 176 LEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNL 226
+ A T L +L + G +M + + + R + L+ +R+ +
Sbjct: 505 IAAAVTKLPSLRYLWVQGYR--ASMTGQDLMQMARPYWNIELIPSRRVPEV 553
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 10/103 (9%)
Query: 336 KGCPELNYLDVSVLQNLG---DQAMVELGKGCPLLKDVVLSHCRQ--ITDVGLSHLVK-N 389
KG P ++ + +N G + E+ LK V H R+ ++D+ L L K
Sbjct: 81 KGKPRAAMFNL-IPENWGGYVTPWVTEISNNLRQLKSV---HFRRMIVSDLDLDRLAKAR 136
Query: 390 CRMLESCHMVYCPGITAAGVATVVSGCANIKKVMVEKWKVSER 432
LE+ + C G T G+ ++V+ C IK +++E+ SE+
Sbjct: 137 ADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEK 179
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 60/141 (42%), Gaps = 10/141 (7%)
Query: 13 GCYVGD---QGLAAVGKVCNQLEDLNL-------RFCEGLTDTGLVDLAHGCGKSLKSLG 62
YV D + L ++G L D L R + D G+ L GC K +
Sbjct: 384 AVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAF 443
Query: 63 IAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDE 122
+TD+ L +G + ++ + L ++G+ ++GCP L+ L+++ ++
Sbjct: 444 YLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSER 503
Query: 123 ALVAVGNQCLSLELLALYSFQ 143
A+ A + SL L + ++
Sbjct: 504 AIAAAVTKLPSLRYLWVQGYR 524
>pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure
pdb|2P1N|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1N|E Chain E, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1O|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1P|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1Q|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|3C6N|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
pdb|3C6O|B Chain B, Small Molecule Agonists And Antagonists Of F-Box
Protein-Substrate Interactions In Auxin Perception And
Signaling
pdb|3C6P|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
Length = 594
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 80/315 (25%), Positives = 129/315 (40%), Gaps = 36/315 (11%)
Query: 97 KGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKG 156
+ A++ L ++L+ + VTD+ L + + ++L L S + F+ GL A+
Sbjct: 95 PWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAAT 154
Query: 157 CKKLKNLTL--SDCYFLSDMGLEAIATGCKELTHLEIN-GCHNIGTMGLESIGKFCRNLT 213
C+ LK L L SD +S L L L I+ + LE + C NL
Sbjct: 155 CRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLK 214
Query: 214 ELALLYCQRIGNLALL--------EVGRGCKSLQALHLVDCSSIGDDAICSIA---EGCQ 262
L L + LA L E+G G + + + D ++ GC+
Sbjct: 215 SLKLNRAVPLEKLATLLQRAPQLEELGTGGYT---------AEVRPDVYSGLSVALSGCK 265
Query: 263 NLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSG 322
L+ L + + AV C+ LT L+L + + + + Q LQ L V
Sbjct: 266 ELRCLS--GFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWV-- 321
Query: 323 CHQIGDAGIMAIAKGCPELNYLDVSVLQN--------LGDQAMVELGKGCPLLKDVVLSH 374
I DAG+ +A C +L L V + L +Q +V + GCP L+ VL
Sbjct: 322 LDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLES-VLYF 380
Query: 375 CRQITDVGLSHLVKN 389
CRQ+T+ L + +N
Sbjct: 381 CRQMTNAALITIARN 395
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 101/433 (23%), Positives = 177/433 (40%), Gaps = 75/433 (17%)
Query: 12 KGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITD 71
K V D L + K + L L CEG + GL +A C ++LK L + + D
Sbjct: 113 KRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATC-RNLKELDLRES-DVDD 170
Query: 72 VS---LEAVGSHCKSLETLS---LDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALV 125
VS L SL +L+ L SE + + + CP L+ LKL
Sbjct: 171 VSGHWLSHFPDTYTSLVSLNISCLASE-VSFSALERLVTRCPNLKSLKL----------- 218
Query: 126 AVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKE 185
N+ + LE LA + Q + L +G G + D Y GL +GCKE
Sbjct: 219 ---NRAVPLEKLA--TLLQRAPQ-LEELGTGGYTAE--VRPDVY----SGLSVALSGCKE 266
Query: 186 LTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVD 245
L L +G + L ++ C LT L L Y + + L+++ C LQ L ++D
Sbjct: 267 LRCL--SGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLD 323
Query: 246 CSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEA 305
I D + +A C++L++L + V E +LTE +
Sbjct: 324 --YIEDAGLEVLASTCKDLRELRVFPSEPF-------VMEPNVALTE-----------QG 363
Query: 306 LISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAM----VELG 361
L+S+ GC + C Q+ +A ++ IA+ P + + +++ + +++G
Sbjct: 364 LVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIG 423
Query: 362 KGCPLLKDVVLSHCRQ---------ITDVGLSHLVKNCRMLESCHMVYCPGITAAGVATV 412
G ++ HC+ +TD ++ + +E + + G + G+ V
Sbjct: 424 FGA------IVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFA-GDSDLGMHHV 476
Query: 413 VSGCANIKKVMVE 425
+SGC +++K+ +
Sbjct: 477 LSGCDSLRKLEIR 489
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 91/201 (45%), Gaps = 29/201 (14%)
Query: 15 YVGDQGLAAVGKVCNQLEDLNLRFCE--------GLTDTGLVDLAHGCGKSLKSLGIAAC 66
Y+ D GL + C L +L + E LT+ GLV ++ GC K L+S+ + C
Sbjct: 324 YIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPK-LESV-LYFC 381
Query: 67 VKITDVSLEAVGSH-------------CKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLK 113
++T+ +L + + K+ + L+L+ I G A+ + C L
Sbjct: 382 RQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDI---GFGAIVEHCKDL-RRL 437
Query: 114 LQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSD 173
+TD+ +G +E+L++ +F +D G+H V GC L+ L + DC F D
Sbjct: 438 SLSGLLTDKVFEYIGTYAKKMEMLSV-AFAGDSDLGMHHVLSGCDSLRKLEIRDCPF-GD 495
Query: 174 MGLEAIATGCKELTHLEINGC 194
L A A+ + + L ++ C
Sbjct: 496 KALLANASKLETMRSLWMSSC 516
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 98/436 (22%), Positives = 161/436 (36%), Gaps = 118/436 (27%)
Query: 5 VLNFGFCKGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAH--GCGKSLKSLG 62
VL C+G GLAA+ C L++L+LR + + D L+H SL SL
Sbjct: 134 VLVLSSCEG--FSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLN 190
Query: 63 IA-ACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVL--------- 112
I+ +++ +LE + + C +L++L L+ K + + Q P L L
Sbjct: 191 ISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK-LATLLQRAPQLEELGTGGYTAEV 249
Query: 113 ----------------KLQCI----NVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHA 152
+L+C+ + L AV + C L L L S+ L
Sbjct: 250 RPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNL-SYATVQSYDLVK 308
Query: 153 VGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCH----------------- 195
+ C KL+ L + D ++ D GLE +A+ CK+L L +
Sbjct: 309 LLCQCPKLQRLWVLD--YIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVS 366
Query: 196 -NIGTMGLESIGKFCRNLTELALLYCQR-------------------IGNLALLEVGRG- 234
++G LES+ FCR +T AL+ R L L++G G
Sbjct: 367 VSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGA 426
Query: 235 ----CKSL---------------------QALHLVDCSSIGDD--AICSIAEGCQNLKKL 267
CK L + + ++ + GD + + GC +L+KL
Sbjct: 427 IVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKL 486
Query: 268 HIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQ----GCSLQHLNVSGC 323
IR C G+ ++A ++ L + C +S G G + LNV
Sbjct: 487 EIRDC-PFGDKALLANASKLETMRSLWMSSCS-------VSFGACKLLGQKMPKLNVEVI 538
Query: 324 HQIGDAGIMAIAKGCP 339
+ G + + CP
Sbjct: 539 DERGAPD--SRPESCP 552
>pdb|1FQV|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|E Chain E, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|G Chain G, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|I Chain I, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|K Chain K, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|M Chain M, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|O Chain O, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|2ASS|B Chain B, Crystal Structure Of The Skp1-Skp2-Cks1 Complex
pdb|2AST|B Chain B, Crystal Structure Of Skp1-Skp2-Cks1 In Complex With A P27
Peptide
Length = 336
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 76/176 (43%), Gaps = 5/176 (2%)
Query: 73 SLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCL 132
+L + S C L+ LSL+ + + V+ +A+ L+R+ C ++ AL + + C
Sbjct: 109 TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 168
Query: 133 SLELLALYSFQQFTDKGLH-AVGKGCKKLKNLTLSDCY-FLSDMGLEAIATGCKELTHLE 190
L+ L L FT+K + AV + + L LS L L + C L HL+
Sbjct: 169 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 228
Query: 191 INGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGR--GCKSLQALHLV 244
++ + + + L L+L C I LLE+G K+LQ +V
Sbjct: 229 LSDSVMLKNDCFQEFFQL-NYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIV 283
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 75/165 (45%), Gaps = 16/165 (9%)
Query: 237 SLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGI-VAVGEHCNSLTELSL 295
+L L+L CS + A+ ++ C L +L++ C+ + VAV ++T+L+L
Sbjct: 143 NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 202
Query: 296 R-FCDRVGDEALISIGQGC-SLQHLNVSGCHQIGDAGIMAIAKGCPELNYLD---VSVLQ 350
+ + L ++ + C +L HL++S + + +LNYL +S
Sbjct: 203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF----QLNYLQHLSLSRCY 258
Query: 351 NLGDQAMVELGKGCPLLKD-----VVLSHCRQITDVGLSHLVKNC 390
++ + ++ELG+ P LK +V Q+ L HL NC
Sbjct: 259 DIIPETLLELGE-IPTLKTLQVFGIVPDGTLQLLKEALPHLQINC 302
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/135 (21%), Positives = 57/135 (42%), Gaps = 27/135 (20%)
Query: 286 HCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLD 345
C+ L LSL R+ D + ++ + +L LN+SGC + + + C L+ L+
Sbjct: 116 QCSKLQNLSLEGL-RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELN 174
Query: 346 VSVLQNLGDQAMVELGKGCPLLKDVVLSHCRQ-ITDVGLSHLVKNCRMLESCHMVYCPGI 404
+S + ++ + V ++H + IT + LS KN +
Sbjct: 175 LSWCFDFTEKHV-----------QVAVAHVSETITQLNLSGYRKN--------------L 209
Query: 405 TAAGVATVVSGCANI 419
+ ++T+V C N+
Sbjct: 210 QKSDLSTLVRRCPNL 224
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 62/143 (43%), Gaps = 12/143 (8%)
Query: 6 LNFGFCKGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGL-VDLAHGCGKSLKSLGIA 64
LN C G + L + C++L++LNL +C T+ + V +AH +++ L ++
Sbjct: 147 LNLSGCSG--FSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAH-VSETITQLNLS 203
Query: 65 ACVK-ITDVSLEAVGSHCKSLETLSL-DSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDE 122
K + L + C +L L L DS + N Q L + +C ++ E
Sbjct: 204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPE 263
Query: 123 ALVAVGNQCLSLELLALYSFQQF 145
L+ +G E+ L + Q F
Sbjct: 264 TLLELG------EIPTLKTLQVF 280
>pdb|1FS2|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS2|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
Length = 272
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 76/176 (43%), Gaps = 5/176 (2%)
Query: 73 SLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCL 132
+L + S C L+ LSL+ + + V+ +A+ L+R+ C ++ AL + + C
Sbjct: 71 TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 130
Query: 133 SLELLALYSFQQFTDKGLH-AVGKGCKKLKNLTLSDCY-FLSDMGLEAIATGCKELTHLE 190
L+ L L FT+K + AV + + L LS L L + C L HL+
Sbjct: 131 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 190
Query: 191 INGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGR--GCKSLQALHLV 244
++ + + + L L+L C I LLE+G K+LQ +V
Sbjct: 191 LSDSVMLKNDCFQEFFQL-NYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIV 245
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 75/165 (45%), Gaps = 16/165 (9%)
Query: 237 SLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGI-VAVGEHCNSLTELSL 295
+L L+L CS + A+ ++ C L +L++ C+ + VAV ++T+L+L
Sbjct: 105 NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 164
Query: 296 R-FCDRVGDEALISIGQGC-SLQHLNVSGCHQIGDAGIMAIAKGCPELNYLD---VSVLQ 350
+ + L ++ + C +L HL++S + + +LNYL +S
Sbjct: 165 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF----QLNYLQHLSLSRCY 220
Query: 351 NLGDQAMVELGKGCPLLKD-----VVLSHCRQITDVGLSHLVKNC 390
++ + ++ELG+ P LK +V Q+ L HL NC
Sbjct: 221 DIIPETLLELGE-IPTLKTLQVFGIVPDGTLQLLKEALPHLQINC 264
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 286 HCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLD 345
C+ L LSL R+ D + ++ + +L LN+SGC + + + C L+ L+
Sbjct: 78 QCSKLQNLSLEGL-RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELN 136
Query: 346 VS 347
+S
Sbjct: 137 LS 138
>pdb|3CWZ|B Chain B, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 384
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 198 GTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDD 252
G +G I + RN+ E+ CQ +G L +++G L A LV+C + ++
Sbjct: 275 GELGETQILQIPRNVLEMTF-ECQNLGKLTTVQIGHDNSGLYAKWLVECVMVRNE 328
>pdb|2JE0|A Chain A, Crystal Structure Of Pp32
pdb|2JE0|B Chain B, Crystal Structure Of Pp32
pdb|2JE0|C Chain C, Crystal Structure Of Pp32
pdb|2JE0|D Chain D, Crystal Structure Of Pp32
pdb|2JE0|E Chain E, Crystal Structure Of Pp32
pdb|2JE0|F Chain F, Crystal Structure Of Pp32
pdb|2JE1|A Chain A, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|B Chain B, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|C Chain C, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|D Chain D, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
Length = 149
Score = 29.3 bits (64), Expect = 4.9, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 175 GLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQ 221
GLE +A C LTHL ++G +E + K NL L L C+
Sbjct: 79 GLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKL-ENLKSLDLFNCE 124
>pdb|3ZBD|A Chain A, Structure Of Tgev Nsp1
pdb|3ZBD|B Chain B, Structure Of Tgev Nsp1
Length = 113
Score = 28.5 bits (62), Expect = 7.9, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query: 269 IRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCS 314
I+ CY+ G G V V E+C L + CDR + +G G S
Sbjct: 38 IKYCYRNGFEGYVFVPEYCRDLVD-----CDRKDHYVIGVLGNGVS 78
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,335,730
Number of Sequences: 62578
Number of extensions: 495206
Number of successful extensions: 1042
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 983
Number of HSP's gapped (non-prelim): 38
length of query: 448
length of database: 14,973,337
effective HSP length: 102
effective length of query: 346
effective length of database: 8,590,381
effective search space: 2972271826
effective search space used: 2972271826
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)