Query 013172
Match_columns 448
No_of_seqs 312 out of 2498
Neff 11.4
Searched_HMMs 46136
Date Fri Mar 29 01:07:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013172.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013172hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4341 F-box protein containi 100.0 7.5E-30 1.6E-34 217.2 12.1 321 83-427 139-462 (483)
2 KOG4341 F-box protein containi 100.0 1.6E-29 3.6E-34 215.1 10.3 310 124-434 129-444 (483)
3 PLN00113 leucine-rich repeat r 99.9 1.6E-22 3.5E-27 208.4 18.4 395 3-430 71-488 (968)
4 PLN00113 leucine-rich repeat r 99.9 1.2E-22 2.7E-27 209.3 15.9 398 3-431 142-585 (968)
5 KOG4194 Membrane glycoprotein 99.8 2.3E-22 5.1E-27 178.8 -1.9 342 5-374 82-425 (873)
6 KOG4194 Membrane glycoprotein 99.8 2.5E-21 5.3E-26 172.4 2.0 279 25-322 47-326 (873)
7 KOG2120 SCF ubiquitin ligase, 99.7 5.9E-18 1.3E-22 138.8 9.0 243 58-309 138-382 (419)
8 KOG2120 SCF ubiquitin ligase, 99.7 4.7E-17 1E-21 133.6 10.7 315 106-436 85-406 (419)
9 cd00116 LRR_RI Leucine-rich re 99.7 3.6E-15 7.8E-20 134.5 21.2 63 338-402 220-289 (319)
10 cd00116 LRR_RI Leucine-rich re 99.7 5.9E-15 1.3E-19 133.1 20.7 132 5-142 2-147 (319)
11 PLN03210 Resistant to P. syrin 99.7 9.9E-16 2.1E-20 158.7 14.0 343 26-405 555-907 (1153)
12 KOG1947 Leucine rich repeat pr 99.6 4.2E-15 9E-20 142.3 13.5 264 150-415 180-451 (482)
13 KOG1947 Leucine rich repeat pr 99.6 5.8E-15 1.3E-19 141.3 12.8 272 157-430 160-440 (482)
14 PLN03210 Resistant to P. syrin 99.6 7.3E-15 1.6E-19 152.3 13.6 311 82-428 589-904 (1153)
15 KOG0444 Cytoskeletal regulator 99.5 1.7E-16 3.7E-21 143.3 -6.1 364 6-404 12-375 (1255)
16 KOG0444 Cytoskeletal regulator 99.5 1.6E-16 3.4E-21 143.6 -6.4 386 29-448 7-395 (1255)
17 KOG1909 Ran GTPase-activating 99.4 2.6E-11 5.7E-16 102.5 14.8 187 209-402 91-309 (382)
18 KOG1909 Ran GTPase-activating 99.3 5.6E-11 1.2E-15 100.6 12.9 176 80-272 90-280 (382)
19 KOG0618 Serine/threonine phosp 99.3 1.7E-13 3.6E-18 129.6 -2.9 37 390-428 451-487 (1081)
20 KOG0618 Serine/threonine phosp 99.3 3.5E-13 7.5E-18 127.5 -1.0 129 264-404 361-489 (1081)
21 KOG3207 Beta-tubulin folding c 99.3 1.6E-12 3.4E-17 113.0 2.8 111 29-141 121-231 (505)
22 KOG3207 Beta-tubulin folding c 99.2 7.3E-12 1.6E-16 108.9 3.3 133 235-372 196-333 (505)
23 KOG0472 Leucine-rich repeat pr 99.0 1.1E-11 2.4E-16 106.7 -6.1 43 389-434 503-545 (565)
24 KOG3665 ZYG-1-like serine/thre 98.9 4.2E-09 9.2E-14 102.0 10.3 159 236-400 122-284 (699)
25 KOG3665 ZYG-1-like serine/thre 98.9 7.6E-09 1.6E-13 100.2 10.6 198 14-218 70-283 (699)
26 PRK15387 E3 ubiquitin-protein 98.9 4E-09 8.7E-14 102.7 8.3 263 56-384 201-463 (788)
27 KOG4237 Extracellular matrix p 98.9 3.6E-10 7.9E-15 97.3 0.9 267 44-324 55-357 (498)
28 PRK15387 E3 ubiquitin-protein 98.9 1.7E-09 3.7E-14 105.2 5.6 243 56-359 222-464 (788)
29 KOG2982 Uncharacterized conser 98.8 2.4E-09 5.1E-14 88.9 3.0 239 185-433 46-293 (418)
30 KOG4237 Extracellular matrix p 98.7 3.2E-09 7E-14 91.6 -0.1 277 3-299 69-357 (498)
31 KOG2982 Uncharacterized conser 98.7 3.1E-08 6.7E-13 82.4 5.3 191 76-273 65-260 (418)
32 KOG0472 Leucine-rich repeat pr 98.7 1.7E-10 3.7E-15 99.5 -8.4 107 333-447 429-536 (565)
33 PF14580 LRR_9: Leucine-rich r 98.6 3.5E-08 7.5E-13 78.3 4.7 128 29-167 19-149 (175)
34 COG5238 RNA1 Ran GTPase-activa 98.5 2.4E-06 5.3E-11 70.5 12.9 225 29-271 30-281 (388)
35 PF14580 LRR_9: Leucine-rich r 98.5 6.7E-08 1.5E-12 76.7 2.0 127 57-192 20-148 (175)
36 COG5238 RNA1 Ran GTPase-activa 98.4 6.8E-06 1.5E-10 68.0 12.7 211 156-374 28-281 (388)
37 PRK15370 E3 ubiquitin-protein 98.4 7.9E-07 1.7E-11 87.4 7.5 13 83-95 242-254 (754)
38 PRK15370 E3 ubiquitin-protein 98.4 1.3E-06 2.8E-11 85.9 9.0 223 4-273 202-426 (754)
39 KOG3864 Uncharacterized conser 98.3 1.2E-06 2.6E-11 69.1 5.0 105 315-422 103-209 (221)
40 KOG4658 Apoptotic ATPase [Sign 98.3 4.9E-07 1.1E-11 90.3 3.6 12 339-350 770-781 (889)
41 KOG4658 Apoptotic ATPase [Sign 98.3 5.3E-07 1.2E-11 90.1 3.6 230 56-302 545-784 (889)
42 KOG3864 Uncharacterized conser 98.1 2.4E-06 5.2E-11 67.4 4.0 106 289-396 102-209 (221)
43 KOG1259 Nischarin, modulator o 98.0 2E-06 4.3E-11 72.1 1.3 136 286-435 282-417 (490)
44 KOG1259 Nischarin, modulator o 98.0 2.4E-06 5.3E-11 71.6 1.0 126 132-273 284-410 (490)
45 PF13855 LRR_8: Leucine rich r 97.6 2E-05 4.3E-10 51.0 1.0 60 56-118 1-60 (61)
46 PF13855 LRR_8: Leucine rich r 97.4 1.9E-05 4.2E-10 51.0 -0.9 58 82-141 1-58 (61)
47 KOG1859 Leucine-rich repeat pr 97.3 3.2E-05 6.9E-10 73.0 -1.7 202 150-375 76-289 (1096)
48 KOG0617 Ras suppressor protein 97.3 2E-06 4.3E-11 65.9 -8.1 34 82-117 56-89 (264)
49 KOG0617 Ras suppressor protein 97.2 9.1E-06 2E-10 62.4 -5.1 149 29-194 33-183 (264)
50 KOG2123 Uncharacterized conser 97.1 0.00012 2.7E-09 61.0 0.4 101 29-138 19-123 (388)
51 KOG1859 Leucine-rich repeat pr 97.0 0.00014 3.1E-09 68.8 -0.1 139 254-402 76-243 (1096)
52 KOG2739 Leucine-rich acidic nu 97.0 0.00023 5E-09 59.0 0.9 87 81-168 64-153 (260)
53 smart00367 LRR_CC Leucine-rich 97.0 0.00096 2.1E-08 34.2 2.9 22 365-386 2-23 (26)
54 PLN03150 hypothetical protein; 96.9 0.0019 4.1E-08 63.5 6.2 108 83-195 419-526 (623)
55 KOG2123 Uncharacterized conser 96.9 0.00029 6.3E-09 58.9 0.5 38 364-402 62-99 (388)
56 KOG4308 LRR-containing protein 96.9 0.00097 2.1E-08 62.5 3.8 183 58-245 89-299 (478)
57 PF12799 LRR_4: Leucine Rich r 96.8 0.0018 3.9E-08 38.2 3.5 15 80-94 22-36 (44)
58 PLN03150 hypothetical protein; 96.7 0.0026 5.5E-08 62.6 5.6 109 57-170 419-527 (623)
59 smart00367 LRR_CC Leucine-rich 96.6 0.0033 7.1E-08 32.2 3.0 24 390-413 1-24 (26)
60 PRK15386 type III secretion pr 96.6 0.0055 1.2E-07 55.6 6.2 136 156-322 50-186 (426)
61 PRK15386 type III secretion pr 96.6 0.0064 1.4E-07 55.1 6.6 11 185-195 157-167 (426)
62 KOG2739 Leucine-rich acidic nu 96.4 0.00045 9.8E-09 57.3 -1.3 37 313-349 65-101 (260)
63 PF12799 LRR_4: Leucine Rich r 96.4 0.006 1.3E-07 36.0 3.6 38 82-121 1-38 (44)
64 KOG1644 U2-associated snRNP A' 96.1 0.0018 3.9E-08 51.6 0.4 80 56-141 42-122 (233)
65 KOG1644 U2-associated snRNP A' 96.0 0.0057 1.2E-07 48.9 3.0 107 28-142 41-150 (233)
66 KOG4308 LRR-containing protein 95.6 0.0035 7.6E-08 58.8 0.4 209 31-245 89-327 (478)
67 KOG4579 Leucine-rich repeat (L 95.6 0.0019 4.2E-08 48.0 -1.2 105 29-141 27-132 (177)
68 COG4886 Leucine-rich repeat (L 94.9 0.028 6.1E-07 52.3 4.0 171 56-246 116-287 (394)
69 KOG4579 Leucine-rich repeat (L 94.5 0.023 5E-07 42.5 1.9 108 56-169 27-134 (177)
70 PF13516 LRR_6: Leucine Rich r 94.4 0.039 8.5E-07 27.5 2.0 21 82-102 2-22 (24)
71 COG4886 Leucine-rich repeat (L 94.4 0.025 5.4E-07 52.7 2.2 173 81-273 115-288 (394)
72 PF13516 LRR_6: Leucine Rich r 92.8 0.099 2.2E-06 26.0 1.9 20 365-385 2-21 (24)
73 smart00368 LRR_RI Leucine rich 89.7 0.37 8E-06 25.0 2.2 16 84-99 4-19 (28)
74 KOG3763 mRNA export factor TAP 88.4 0.58 1.3E-05 43.9 3.9 81 56-138 218-307 (585)
75 KOG0531 Protein phosphatase 1, 88.2 0.18 3.9E-06 47.3 0.6 104 27-143 93-197 (414)
76 KOG3763 mRNA export factor TAP 87.8 1.1 2.3E-05 42.2 5.2 85 337-423 216-307 (585)
77 smart00368 LRR_RI Leucine rich 87.7 0.7 1.5E-05 24.0 2.4 24 107-130 2-25 (28)
78 KOG0531 Protein phosphatase 1, 85.9 0.4 8.7E-06 44.9 1.6 131 27-172 70-200 (414)
79 PF13504 LRR_7: Leucine rich r 85.1 0.44 9.5E-06 21.4 0.7 12 418-429 2-13 (17)
80 PF07723 LRR_2: Leucine Rich R 76.3 2.7 5.9E-05 21.3 1.9 25 58-82 2-26 (26)
81 PF03382 DUF285: Mycoplasma pr 71.9 2 4.3E-05 32.1 1.1 15 358-373 54-68 (120)
82 KOG0532 Leucine-rich repeat (L 70.5 0.47 1E-05 44.7 -3.0 34 84-119 145-178 (722)
83 PF00560 LRR_1: Leucine Rich R 68.3 3 6.4E-05 20.0 0.9 13 418-430 1-13 (22)
84 KOG0532 Leucine-rich repeat (L 66.7 3.7 8E-05 39.1 1.9 36 83-120 212-247 (722)
85 smart00370 LRR Leucine-rich re 64.6 6 0.00013 19.8 1.7 14 82-95 2-15 (26)
86 smart00369 LRR_TYP Leucine-ric 64.6 6 0.00013 19.8 1.7 14 82-95 2-15 (26)
87 PF13306 LRR_5: Leucine rich r 60.1 2.4 5.2E-05 31.9 -0.5 12 286-297 33-44 (129)
88 PF03382 DUF285: Mycoplasma pr 56.3 5.2 0.00011 29.8 0.8 10 334-343 56-65 (120)
89 smart00365 LRR_SD22 Leucine-ri 45.1 11 0.00024 19.2 0.7 14 417-430 2-15 (26)
90 KOG3735 Tropomodulin and leiom 38.9 33 0.00072 30.5 3.1 82 50-131 192-279 (353)
91 KOG3735 Tropomodulin and leiom 34.1 1.2E+02 0.0025 27.3 5.6 82 73-155 189-277 (353)
92 smart00364 LRR_BAC Leucine-ric 32.4 19 0.00041 18.3 0.4 16 417-432 2-17 (26)
No 1
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.96 E-value=7.5e-30 Score=217.19 Aligned_cols=321 Identities=30% Similarity=0.561 Sum_probs=205.1
Q ss_pred CCceeeccccc-cchhhHHHHhhcCCcccEEEee-ccCCCcHHHHHHHhhccccccccccccccCChhHHHHHhhcCCCC
Q 013172 83 SLETLSLDSEF-IHNKGVHAVAQGCPLLRVLKLQ-CINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKL 160 (448)
Q Consensus 83 ~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 160 (448)
.|+.|++.++. +....+..+..++|++++|.+. +..+++.....+++.|++|++|++..|..+++..+..+..+|++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 45555555543 2233344444455555555553 334666777777777788888888877777777777777788888
Q ss_pred CEEeecCCccCChhhHHHHHhcCCCCcEEEecCCCCCChhhHHHHhhcCCCcceEecccccccCchhHHHHhccCcCCce
Q 013172 161 KNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQA 240 (448)
Q Consensus 161 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 240 (448)
+++++++|+.+...++..+.+++..++.+...||.......+......++.+.++++..|..+++.....+...+..|+.
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~ 298 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV 298 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence 88888888877777777777777777777777777777777777777777777777777777777776666666777777
Q ss_pred EeccCCcCcChHHHHHHHHhCCCCcEEEccccccccCchHhHhhhcCCCCcEEeccccCCcCchHHHhhccCCC-ccEEe
Q 013172 241 LHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCS-LQHLN 319 (448)
Q Consensus 241 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~-L~~L~ 319 (448)
+..++|..+++..+..+.+++++|+.+.+.+|..+++.++..+..+++.|+.+++..|..+.+..+..++..++ |+.+.
T Consensus 299 l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ls 378 (483)
T KOG4341|consen 299 LCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLS 378 (483)
T ss_pred hcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCC
Confidence 77777777777777777777777777777777777777777777777777777776665555444444444332 55555
Q ss_pred eeCccccChHHHHHHHhhCCCCCEEeccCcCCCCHHHHHHHhcCCCCCcEEeccCCCCCChHHHHHHHHcCccCceEecc
Q 013172 320 VSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSHCRQITDVGLSHLVKNCRMLESCHMV 399 (448)
Q Consensus 320 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~ 399 (448)
++.|..++++++..+... ......|+.+.+++|+.+++..++++. .|++|+.+++.
T Consensus 379 lshce~itD~gi~~l~~~-----------------------~c~~~~l~~lEL~n~p~i~d~~Le~l~-~c~~Leri~l~ 434 (483)
T KOG4341|consen 379 LSHCELITDEGIRHLSSS-----------------------SCSLEGLEVLELDNCPLITDATLEHLS-ICRNLERIELI 434 (483)
T ss_pred hhhhhhhhhhhhhhhhhc-----------------------cccccccceeeecCCCCchHHHHHHHh-hCcccceeeee
Confidence 555555554443333210 012345555555555555555555443 45556666655
Q ss_pred CCCCCCHHHHHHHHhcCccceEEEEeee
Q 013172 400 YCPGITAAGVATVVSGCANIKKVMVEKW 427 (448)
Q Consensus 400 ~c~~~~~~~~~~~~~~~~~L~~L~l~~~ 427 (448)
+|..++..++..+..++|+++...+..-
T Consensus 435 ~~q~vtk~~i~~~~~~lp~i~v~a~~a~ 462 (483)
T KOG4341|consen 435 DCQDVTKEAISRFATHLPNIKVHAYFAP 462 (483)
T ss_pred chhhhhhhhhHHHHhhCccceehhhccC
Confidence 6655555555555555555555544433
No 2
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.96 E-value=1.6e-29 Score=215.14 Aligned_cols=310 Identities=29% Similarity=0.578 Sum_probs=279.0
Q ss_pred HHHHHhhc-cccccccccccccCChhHHHHHhhcCCCCCEEeecCCccCChhhHHHHHhcCCCCcEEEecCCCCCChhhH
Q 013172 124 LVAVGNQC-LSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGL 202 (448)
Q Consensus 124 ~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 202 (448)
+..+...+ ..|+.|.+.++..+.+..+..+...||++++|.+.+|..+++..+..+.+.|++|++|++..|..+++..+
T Consensus 129 V~~~~~Rcgg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~L 208 (483)
T KOG4341|consen 129 VENMISRCGGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSL 208 (483)
T ss_pred eehHhhhhccccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHH
Confidence 33344434 57999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCcceEecccccccCchhHHHHhccCcCCceEeccCCcCcChHHHHHHHHhCCCCcEEEccccccccCchHhH
Q 013172 203 ESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVA 282 (448)
Q Consensus 203 ~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 282 (448)
..+...|++|+++++++|+.+...++..+.+++..++.+...+|.....+.+......++.+.++++..|..+++.....
T Consensus 209 k~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~ 288 (483)
T KOG4341|consen 209 KYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWL 288 (483)
T ss_pred HHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHH
Confidence 99999999999999999999999999899899999999999999989988888888888999999999999999999888
Q ss_pred hhhcCCCCcEEeccccCCcCchHHHhhccCC-CccEEeeeCccccChHHHHHHHhhCCCCCEEeccCcCCCCHHHHHHHh
Q 013172 283 VGEHCNSLTELSLRFCDRVGDEALISIGQGC-SLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELG 361 (448)
Q Consensus 283 ~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 361 (448)
+...+..|+.|..++|..+++..+..++..+ +|+.+.+.+|.++++.++..+.++++.|+.+++..|....+..+..++
T Consensus 289 i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls 368 (483)
T KOG4341|consen 289 IACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLS 368 (483)
T ss_pred HhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhc
Confidence 8889999999999999999999999998876 599999999999999999999999999999999999888888899999
Q ss_pred cCCCCCcEEeccCCCCCChHHHHHHHH---cCccCceEeccCCCCCCHHHHHHHHhcCccceEEEEeeee-eccccc
Q 013172 362 KGCPLLKDVVLSHCRQITDVGLSHLVK---NCRMLESCHMVYCPGITAAGVATVVSGCANIKKVMVEKWK-VSERTK 434 (448)
Q Consensus 362 ~~~~~L~~L~l~~c~~l~~~~~~~~~~---~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~ 434 (448)
.+||.|+++.++.|..+++.++.++.. +...|+.+.+.+|+.+++..+..+ ..|++|+.+++.+|+ ++..++
T Consensus 369 ~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l-~~c~~Leri~l~~~q~vtk~~i 444 (483)
T KOG4341|consen 369 RNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHL-SICRNLERIELIDCQDVTKEAI 444 (483)
T ss_pred cCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHH-hhCcccceeeeechhhhhhhhh
Confidence 999999999999999999998887765 356699999999998888766654 679999999999984 444444
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.89 E-value=1.6e-22 Score=208.43 Aligned_cols=395 Identities=17% Similarity=0.103 Sum_probs=184.2
Q ss_pred eeEEEeeeeccccccccccchhccccCCcceeeeccccccChhHHHHHHhhhCCCccEEEeccCCccChhhHHHHHhcCC
Q 013172 3 KLVLNFGFCKGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCK 82 (448)
Q Consensus 3 ~~~L~~s~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 82 (448)
+..||++.|.+.... ......+++|+.|+++++ .+...-...+...+ ++|++|++++|. ++...+. ..++
T Consensus 71 v~~L~L~~~~i~~~~----~~~~~~l~~L~~L~Ls~n-~~~~~ip~~~~~~l-~~L~~L~Ls~n~-l~~~~p~---~~l~ 140 (968)
T PLN00113 71 VVSIDLSGKNISGKI----SSAIFRLPYIQTINLSNN-QLSGPIPDDIFTTS-SSLRYLNLSNNN-FTGSIPR---GSIP 140 (968)
T ss_pred EEEEEecCCCccccC----ChHHhCCCCCCEEECCCC-ccCCcCChHHhccC-CCCCEEECcCCc-cccccCc---cccC
Confidence 456777765543222 222234588888888877 33321112233233 678888888764 3221111 2357
Q ss_pred CCceeeccccccchhhHHHHhhcCCcccEEEeeccCCCcHHHHHHHhhccccccccccccccCChhHHHHHhhcCCCCCE
Q 013172 83 SLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKN 162 (448)
Q Consensus 83 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 162 (448)
+|++|++++|.+.......+ ..+++|++|++++|.+....+..+.. +++|++|+++++. +... ++.....+++|+.
T Consensus 141 ~L~~L~Ls~n~~~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~~~~-l~~L~~L~L~~n~-l~~~-~p~~l~~l~~L~~ 216 (968)
T PLN00113 141 NLETLDLSNNMLSGEIPNDI-GSFSSLKVLDLGGNVLVGKIPNSLTN-LTSLEFLTLASNQ-LVGQ-IPRELGQMKSLKW 216 (968)
T ss_pred CCCEEECcCCcccccCChHH-hcCCCCCEEECccCcccccCChhhhh-CcCCCeeeccCCC-CcCc-CChHHcCcCCccE
Confidence 77777777776653333333 34677777777777665444444433 6777777776643 2211 2223345667777
Q ss_pred EeecCCccCChhhHHHHHhcCCCCcEEEecCCCCCChhhHHHHhhcCCCcceEecccccccCchhHHHHhccCcCCceEe
Q 013172 163 LTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALH 242 (448)
Q Consensus 163 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 242 (448)
|+++++.. ... +......+++|++|++.++. +.......+ ..+++|+.|++.++. +.... .....++++|+.|+
T Consensus 217 L~L~~n~l-~~~-~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l-~~l~~L~~L~L~~n~-l~~~~-p~~l~~l~~L~~L~ 290 (968)
T PLN00113 217 IYLGYNNL-SGE-IPYEIGGLTSLNHLDLVYNN-LTGPIPSSL-GNLKNLQYLFLYQNK-LSGPI-PPSIFSLQKLISLD 290 (968)
T ss_pred EECcCCcc-CCc-CChhHhcCCCCCEEECcCce-eccccChhH-hCCCCCCEEECcCCe-eeccC-chhHhhccCcCEEE
Confidence 77766642 211 11122346677777776643 221111222 223666666666532 22111 11223455666666
Q ss_pred ccCCcCcChHHHHHHHHhCCCCcEEEccccccccCchHhHhhhcCCCCcEEeccccCCcCchHHHhhccCCCccEEeeeC
Q 013172 243 LVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSG 322 (448)
Q Consensus 243 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 322 (448)
+++|. +... +......+++|+.|++.++. +.... ......+++|+.|+++++. +.......+....+|+.|++++
T Consensus 291 Ls~n~-l~~~-~p~~~~~l~~L~~L~l~~n~-~~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~~~~L~~L~Ls~ 365 (968)
T PLN00113 291 LSDNS-LSGE-IPELVIQLQNLEILHLFSNN-FTGKI-PVALTSLPRLQVLQLWSNK-FSGEIPKNLGKHNNLTVLDLST 365 (968)
T ss_pred CcCCe-eccC-CChhHcCCCCCcEEECCCCc-cCCcC-ChhHhcCCCCCEEECcCCC-CcCcCChHHhCCCCCcEEECCC
Confidence 66542 2111 11222335566666665532 22111 1122345556666655532 3322333344444455555554
Q ss_pred cc-----------------------ccChHHHHHHHhhCCCCCEEeccCcCCCCHHHHHHHhcCCCCCcEEeccCCCCCC
Q 013172 323 CH-----------------------QIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSHCRQIT 379 (448)
Q Consensus 323 ~~-----------------------~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~ 379 (448)
+. .+... +......+++|+.|++++| .++...... ...+++|+.|+++++ .++
T Consensus 366 n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~-~p~~~~~~~~L~~L~L~~n-~l~~~~p~~-~~~l~~L~~L~Ls~N-~l~ 441 (968)
T PLN00113 366 NNLTGEIPEGLCSSGNLFKLILFSNSLEGE-IPKSLGACRSLRRVRLQDN-SFSGELPSE-FTKLPLVYFLDISNN-NLQ 441 (968)
T ss_pred CeeEeeCChhHhCcCCCCEEECcCCEeccc-CCHHHhCCCCCCEEECcCC-EeeeECChh-HhcCCCCCEEECcCC-ccc
Confidence 31 11111 1111223455555555554 222111111 123555555555553 233
Q ss_pred hHHHHHHHHcCccCceEeccCCCCCCHHHHHHHHhcCccceEEEEeeeeec
Q 013172 380 DVGLSHLVKNCRMLESCHMVYCPGITAAGVATVVSGCANIKKVMVEKWKVS 430 (448)
Q Consensus 380 ~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 430 (448)
......+ ..+++|+.|++++|..... ++.. ...++|+.|++++|++.
T Consensus 442 ~~~~~~~-~~l~~L~~L~L~~n~~~~~--~p~~-~~~~~L~~L~ls~n~l~ 488 (968)
T PLN00113 442 GRINSRK-WDMPSLQMLSLARNKFFGG--LPDS-FGSKRLENLDLSRNQFS 488 (968)
T ss_pred CccChhh-ccCCCCcEEECcCceeeee--cCcc-cccccceEEECcCCccC
Confidence 3222212 2356666666666543211 1111 12356666666666665
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.89 E-value=1.2e-22 Score=209.30 Aligned_cols=398 Identities=17% Similarity=0.102 Sum_probs=190.7
Q ss_pred eeEEEeeeeccccccccccchhccccCCcceeeeccccccChhHHHHHHhhhCCCccEEEeccCCccChhhHHHHHhcCC
Q 013172 3 KLVLNFGFCKGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCK 82 (448)
Q Consensus 3 ~~~L~~s~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 82 (448)
..+|+++.|.+..... ..+ ..+++|++|+++++. +.......+ ..+ ++|++|++++|. +....+..+ ..++
T Consensus 142 L~~L~Ls~n~~~~~~p---~~~-~~l~~L~~L~L~~n~-l~~~~p~~~-~~l-~~L~~L~L~~n~-l~~~~p~~l-~~l~ 212 (968)
T PLN00113 142 LETLDLSNNMLSGEIP---NDI-GSFSSLKVLDLGGNV-LVGKIPNSL-TNL-TSLEFLTLASNQ-LVGQIPREL-GQMK 212 (968)
T ss_pred CCEEECcCCcccccCC---hHH-hcCCCCCEEECccCc-ccccCChhh-hhC-cCCCeeeccCCC-CcCcCChHH-cCcC
Confidence 3578888876542211 222 345889999998873 322111222 222 678888888875 333223332 4567
Q ss_pred CCceeeccccccchhhHHHHhhcCCcccEEEeeccCCCcHHHHHHHhhccccccccccccccCChhHHHHHhhcCCCCCE
Q 013172 83 SLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKN 162 (448)
Q Consensus 83 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 162 (448)
+|++|++++|.+.......+ ..+++|++|++++|.+....+..+.. +++|+.|+++++. +... ++.....+++|++
T Consensus 213 ~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~-l~~~-~p~~l~~l~~L~~ 288 (968)
T PLN00113 213 SLKWIYLGYNNLSGEIPYEI-GGLTSLNHLDLVYNNLTGPIPSSLGN-LKNLQYLFLYQNK-LSGP-IPPSIFSLQKLIS 288 (968)
T ss_pred CccEEECcCCccCCcCChhH-hcCCCCCEEECcCceeccccChhHhC-CCCCCEEECcCCe-eecc-CchhHhhccCcCE
Confidence 88888887776654333333 34677777777777665444444433 6677777776542 2211 1122234566666
Q ss_pred EeecCCccCChhhHHHHHhcCCCCcEEEecCCCCCChhhHHHHhhcCCCcceEecccccccCchhHHHHhccCcCCceEe
Q 013172 163 LTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALH 242 (448)
Q Consensus 163 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 242 (448)
|++++|. +... +......+++|+.|++.++. +.......+. .+++|+.|++.++. +.... ......+++|+.|+
T Consensus 289 L~Ls~n~-l~~~-~p~~~~~l~~L~~L~l~~n~-~~~~~~~~~~-~l~~L~~L~L~~n~-l~~~~-p~~l~~~~~L~~L~ 362 (968)
T PLN00113 289 LDLSDNS-LSGE-IPELVIQLQNLEILHLFSNN-FTGKIPVALT-SLPRLQVLQLWSNK-FSGEI-PKNLGKHNNLTVLD 362 (968)
T ss_pred EECcCCe-eccC-CChhHcCCCCCcEEECCCCc-cCCcCChhHh-cCCCCCEEECcCCC-CcCcC-ChHHhCCCCCcEEE
Confidence 6666654 2211 12222345556666655532 2111111111 23555555554422 11111 11122334444444
Q ss_pred ccCCcC-----------------------cChHHHHHHHHhCCCCcEEEccccccccCchHhHhhhcCCCCcEEeccccC
Q 013172 243 LVDCSS-----------------------IGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCD 299 (448)
Q Consensus 243 l~~~~~-----------------------~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 299 (448)
++++.. +... .......+++|+.|++.++. ++... +.....++.|+.|+++++.
T Consensus 363 Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~-~p~~~~~~~~L~~L~L~~n~-l~~~~-p~~~~~l~~L~~L~Ls~N~ 439 (968)
T PLN00113 363 LSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGE-IPKSLGACRSLRRVRLQDNS-FSGEL-PSEFTKLPLVYFLDISNNN 439 (968)
T ss_pred CCCCeeEeeCChhHhCcCCCCEEECcCCEeccc-CCHHHhCCCCCCEEECcCCE-eeeEC-ChhHhcCCCCCEEECcCCc
Confidence 443211 1110 01112234555555555542 22111 1112234444444444421
Q ss_pred CcCchHHHhhccC-----------------------CCccEEeeeCccccChHHHHHHHhhCCCCCEEeccCcCCCCHHH
Q 013172 300 RVGDEALISIGQG-----------------------CSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQA 356 (448)
Q Consensus 300 ~~~~~~~~~l~~~-----------------------~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 356 (448)
+.......+... .+|+.|+++++ .++.. .......+++|+.|++++| .+....
T Consensus 440 -l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n-~l~~~-~~~~~~~l~~L~~L~Ls~N-~l~~~~ 515 (968)
T PLN00113 440 -LQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRN-QFSGA-VPRKLGSLSELMQLKLSEN-KLSGEI 515 (968)
T ss_pred -ccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCC-ccCCc-cChhhhhhhccCEEECcCC-cceeeC
Confidence 221111111122 34555555553 22221 1122234566777777766 333222
Q ss_pred HHHHhcCCCCCcEEeccCCCCCChHHHHHHHHcCccCceEeccCCCCCCHHHHHHHHhcCccceEEEEeeeeecc
Q 013172 357 MVELGKGCPLLKDVVLSHCRQITDVGLSHLVKNCRMLESCHMVYCPGITAAGVATVVSGCANIKKVMVEKWKVSE 431 (448)
Q Consensus 357 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 431 (448)
...+ ..+++|++|++++| .++......+ ..+++|+.|++++|..... ++..+..+++|+.+++++|++..
T Consensus 516 p~~~-~~l~~L~~L~Ls~N-~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~--~p~~l~~l~~L~~l~ls~N~l~~ 585 (968)
T PLN00113 516 PDEL-SSCKKLVSLDLSHN-QLSGQIPASF-SEMPVLSQLDLSQNQLSGE--IPKNLGNVESLVQVNISHNHLHG 585 (968)
T ss_pred ChHH-cCccCCCEEECCCC-cccccCChhH-hCcccCCEEECCCCccccc--CChhHhcCcccCEEeccCCccee
Confidence 1222 35677888888774 3554333333 3577888888887764322 23344567788888888887654
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.83 E-value=2.3e-22 Score=178.83 Aligned_cols=342 Identities=20% Similarity=0.148 Sum_probs=164.3
Q ss_pred EEEeeeeccccccccccchhccccCCcceeeeccccccChhHHHHHHhhhCCCccEEEeccCCccChhhHHHHHhcCCCC
Q 013172 5 VLNFGFCKGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSL 84 (448)
Q Consensus 5 ~L~~s~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 84 (448)
.||+|+|++..++-..+..+ ++|+++.+.++ .++..+ .+.... .+++.|++.++. ++...-..+ +..|.|
T Consensus 82 ~LdlsnNkl~~id~~~f~nl----~nLq~v~l~~N-~Lt~IP--~f~~~s-ghl~~L~L~~N~-I~sv~se~L-~~l~al 151 (873)
T KOG4194|consen 82 TLDLSNNKLSHIDFEFFYNL----PNLQEVNLNKN-ELTRIP--RFGHES-GHLEKLDLRHNL-ISSVTSEEL-SALPAL 151 (873)
T ss_pred eeeccccccccCcHHHHhcC----Ccceeeeeccc-hhhhcc--cccccc-cceeEEeeeccc-cccccHHHH-HhHhhh
Confidence 47777766665554433333 77777777666 222211 111111 457777777653 433333332 335777
Q ss_pred ceeeccccccchhhHHHHhhcCCcccEEEeeccCCCcHHHHHHHhhccccccccccccccCChhHHHHHhhcCCCCCEEe
Q 013172 85 ETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLT 164 (448)
Q Consensus 85 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 164 (448)
++|+|+.|.++......+.. -.++++|++.+|.++......+.. +.+|..|.++. ++++.- ....++.+|+|+.|+
T Consensus 152 rslDLSrN~is~i~~~sfp~-~~ni~~L~La~N~It~l~~~~F~~-lnsL~tlkLsr-NrittL-p~r~Fk~L~~L~~Ld 227 (873)
T KOG4194|consen 152 RSLDLSRNLISEIPKPSFPA-KVNIKKLNLASNRITTLETGHFDS-LNSLLTLKLSR-NRITTL-PQRSFKRLPKLESLD 227 (873)
T ss_pred hhhhhhhchhhcccCCCCCC-CCCceEEeeccccccccccccccc-cchheeeeccc-Cccccc-CHHHhhhcchhhhhh
Confidence 77777776665544433332 346777777777776655555544 45666666665 223221 223344567777777
Q ss_pred ecCCccCChhhHHHHHhcCCCCcEEEecCCCCCChhhHHHHhhcCCCcceEecccccccCchhHHHHhccCcCCceEecc
Q 013172 165 LSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLV 244 (448)
Q Consensus 165 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 244 (448)
+..+..-..++ ..++++++|+.|.+..+ .+....-..+. .+.++++|++.. +.+.... ..++-+++.|+.|+++
T Consensus 228 LnrN~irive~--ltFqgL~Sl~nlklqrN-~I~kL~DG~Fy-~l~kme~l~L~~-N~l~~vn-~g~lfgLt~L~~L~lS 301 (873)
T KOG4194|consen 228 LNRNRIRIVEG--LTFQGLPSLQNLKLQRN-DISKLDDGAFY-GLEKMEHLNLET-NRLQAVN-EGWLFGLTSLEQLDLS 301 (873)
T ss_pred ccccceeeehh--hhhcCchhhhhhhhhhc-CcccccCccee-eecccceeeccc-chhhhhh-cccccccchhhhhccc
Confidence 76664211111 11345666776666652 22221111111 136666666655 2222211 1122345666666666
Q ss_pred CCcCcChHHHHHHHHhCCCCcEEEccccccccCchHhHhhhcCCCCcEEeccccCCcCchHHHhhccCCCccEEeeeCcc
Q 013172 245 DCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCH 324 (448)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 324 (448)
.+ .+....... ...+++|+.|+++++ .++......+ ..+..|++|.++.+ .++...-.++....+|+.|+++.+
T Consensus 302 ~N-aI~rih~d~-WsftqkL~~LdLs~N-~i~~l~~~sf-~~L~~Le~LnLs~N-si~~l~e~af~~lssL~~LdLr~N- 375 (873)
T KOG4194|consen 302 YN-AIQRIHIDS-WSFTQKLKELDLSSN-RITRLDEGSF-RVLSQLEELNLSHN-SIDHLAEGAFVGLSSLHKLDLRSN- 375 (873)
T ss_pred hh-hhheeecch-hhhcccceeEecccc-ccccCChhHH-HHHHHhhhhccccc-chHHHHhhHHHHhhhhhhhcCcCC-
Confidence 52 222111111 122566666666653 2332222222 23456666666552 333333233333345666666542
Q ss_pred ccCh--HHHHHHHhhCCCCCEEeccCcCCCCHHHHHHHhcCCCCCcEEeccC
Q 013172 325 QIGD--AGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSH 374 (448)
Q Consensus 325 ~~~~--~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~ 374 (448)
.++. +.......+++.|++|.+.++ ++....-.++ ..+++|++|++.+
T Consensus 376 ~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~krAf-sgl~~LE~LdL~~ 425 (873)
T KOG4194|consen 376 ELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPKRAF-SGLEALEHLDLGD 425 (873)
T ss_pred eEEEEEecchhhhccchhhhheeecCc-eeeecchhhh-ccCcccceecCCC
Confidence 2211 111122234566666666665 3433333333 3466666666655
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.82 E-value=2.5e-21 Score=172.39 Aligned_cols=279 Identities=16% Similarity=0.124 Sum_probs=141.3
Q ss_pred ccccCCcce-eeeccccccChhHHHHHHhhhCCCccEEEeccCCccChhhHHHHHhcCCCCceeeccccccchhhHHHHh
Q 013172 25 GKVCNQLED-LNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVA 103 (448)
Q Consensus 25 ~~~~~~L~~-L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 103 (448)
...|+.... |+.++. .+.......+...+.+.-+.|+++++. +++..+..+ ..+|+|+++++..|.++. ++.+.
T Consensus 47 pa~c~c~~~lldcs~~-~lea~~~~~l~g~lp~~t~~LdlsnNk-l~~id~~~f-~nl~nLq~v~l~~N~Lt~--IP~f~ 121 (873)
T KOG4194|consen 47 PATCPCNTRLLDCSDR-ELEAIDKSRLKGFLPSQTQTLDLSNNK-LSHIDFEFF-YNLPNLQEVNLNKNELTR--IPRFG 121 (873)
T ss_pred CCcCCCCceeeecCcc-ccccccccccCCcCccceeeeeccccc-cccCcHHHH-hcCCcceeeeeccchhhh--ccccc
Confidence 444554433 555544 444444444444343456778888864 666665554 467888888888776543 33444
Q ss_pred hcCCcccEEEeeccCCCcHHHHHHHhhccccccccccccccCChhHHHHHhhcCCCCCEEeecCCccCChhhHHHHHhcC
Q 013172 104 QGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGC 183 (448)
Q Consensus 104 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 183 (448)
....+|+.|++..|.++...-..+.. +|.|+.|+++... +..-.... +..-+++++|+++++. ++......+ ..+
T Consensus 122 ~~sghl~~L~L~~N~I~sv~se~L~~-l~alrslDLSrN~-is~i~~~s-fp~~~ni~~L~La~N~-It~l~~~~F-~~l 196 (873)
T KOG4194|consen 122 HESGHLEKLDLRHNLISSVTSEELSA-LPALRSLDLSRNL-ISEIPKPS-FPAKVNIKKLNLASNR-ITTLETGHF-DSL 196 (873)
T ss_pred ccccceeEEeeeccccccccHHHHHh-Hhhhhhhhhhhch-hhcccCCC-CCCCCCceEEeecccc-ccccccccc-ccc
Confidence 44567888888877776655555543 6788888887521 21111111 1122578888888775 443322222 234
Q ss_pred CCCcEEEecCCCCCChhhHHHHhhcCCCcceEecccccccCchhHHHHhccCcCCceEeccCCcCcChHHHHHHHHhCCC
Q 013172 184 KELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQN 263 (448)
Q Consensus 184 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 263 (448)
.+|..|.+++ +.++......+ +.+|+|+.|++.. +.+....... ++.+++|+.|.+..+ .+.... ...+..+.+
T Consensus 197 nsL~tlkLsr-NrittLp~r~F-k~L~~L~~LdLnr-N~irive~lt-FqgL~Sl~nlklqrN-~I~kL~-DG~Fy~l~k 270 (873)
T KOG4194|consen 197 NSLLTLKLSR-NRITTLPQRSF-KRLPKLESLDLNR-NRIRIVEGLT-FQGLPSLQNLKLQRN-DISKLD-DGAFYGLEK 270 (873)
T ss_pred chheeeeccc-CcccccCHHHh-hhcchhhhhhccc-cceeeehhhh-hcCchhhhhhhhhhc-Cccccc-Ccceeeecc
Confidence 5777777776 33444333333 3347777777765 3333222222 244566666666542 111100 011223555
Q ss_pred CcEEEccccccccCchHhHhhhcCCCCcEEeccccCCcCchHHHhhccCCCccEEeeeC
Q 013172 264 LKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSG 322 (448)
Q Consensus 264 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 322 (448)
+++|++..+. +....-.+ .-++..|+.|+++++ .+...........++|+.|+++.
T Consensus 271 me~l~L~~N~-l~~vn~g~-lfgLt~L~~L~lS~N-aI~rih~d~WsftqkL~~LdLs~ 326 (873)
T KOG4194|consen 271 MEHLNLETNR-LQAVNEGW-LFGLTSLEQLDLSYN-AIQRIHIDSWSFTQKLKELDLSS 326 (873)
T ss_pred cceeecccch-hhhhhccc-ccccchhhhhccchh-hhheeecchhhhcccceeEeccc
Confidence 6666655432 22111111 113455555555552 23333333333333455555554
No 7
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=5.9e-18 Score=138.80 Aligned_cols=243 Identities=21% Similarity=0.316 Sum_probs=128.9
Q ss_pred ccEEEeccCCccChhhHHHHHhcCCCCceeeccccccchhhHHHHhhcC-CcccEEEeeccCCCcHHHHHHHhhcccccc
Q 013172 58 LKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGC-PLLRVLKLQCINVTDEALVAVGNQCLSLEL 136 (448)
Q Consensus 58 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 136 (448)
-+.+|+.+ ..+.......+.+ .....+.+....+....+.+.+.-+ ..|++++++...++...+..+..+|.+|+.
T Consensus 138 W~~lDl~~-r~i~p~~l~~l~~--rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~ 214 (419)
T KOG2120|consen 138 WQTLDLTG-RNIHPDVLGRLLS--RGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKN 214 (419)
T ss_pred eeeeccCC-CccChhHHHHHHh--CCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhh
Confidence 45566655 2355555555443 3344444443333333222222111 246666666666666666666666666666
Q ss_pred ccccccccCChhHHHHHhhcCCCCCEEeecCCccCChhhHHHHHhcCCCCcEEEecCCCCCChhhHHHHhhcCCCcceEe
Q 013172 137 LALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELA 216 (448)
Q Consensus 137 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~ 216 (448)
|.+.+. .+.+.....+++ -.+|+.++++.|.++++.++..+...|..|.+|++++|....+..-..+.+..++|+.|+
T Consensus 215 lSlEg~-~LdD~I~~~iAk-N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LN 292 (419)
T KOG2120|consen 215 LSLEGL-RLDDPIVNTIAK-NSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLN 292 (419)
T ss_pred cccccc-ccCcHHHHHHhc-cccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhh
Confidence 666653 344443333332 356666666666666666666666666666666666665444442223333345666666
Q ss_pred ccccc-ccCchhHHHHhccCcCCceEeccCCcCcChHHHHHHHHhCCCCcEEEccccccccCchHhHhhhcCCCCcEEec
Q 013172 217 LLYCQ-RIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSL 295 (448)
Q Consensus 217 l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 295 (448)
++++. .+....+..+...||+|.+|++++|..+.+..+..+.+ ++.|++|.+++|+.+....+..+ ...|.|.+|++
T Consensus 293 lsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~k-f~~L~~lSlsRCY~i~p~~~~~l-~s~psl~yLdv 370 (419)
T KOG2120|consen 293 LSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFK-FNYLQHLSLSRCYDIIPETLLEL-NSKPSLVYLDV 370 (419)
T ss_pred hhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHh-cchheeeehhhhcCCChHHeeee-ccCcceEEEEe
Confidence 66652 23333444555566677777776666666644444433 66677777776655443333222 34567777777
Q ss_pred cccCCcCchHHHhh
Q 013172 296 RFCDRVGDEALISI 309 (448)
Q Consensus 296 ~~~~~~~~~~~~~l 309 (448)
.+| +++..++.+
T Consensus 371 ~g~--vsdt~mel~ 382 (419)
T KOG2120|consen 371 FGC--VSDTTMELL 382 (419)
T ss_pred ccc--cCchHHHHH
Confidence 664 344444443
No 8
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=4.7e-17 Score=133.58 Aligned_cols=315 Identities=19% Similarity=0.257 Sum_probs=221.1
Q ss_pred CCcccEEEee---ccCCCcHHHHHHHhhccccccccccc-cccCChhHHHHHhhcCCCCCEEeecCCccCChhhHHHHHh
Q 013172 106 CPLLRVLKLQ---CINVTDEALVAVGNQCLSLELLALYS-FQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIAT 181 (448)
Q Consensus 106 ~~~L~~L~l~---~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 181 (448)
-|.+..-... +..+.|+....+...++.=+-|.+.+ |.+ +..+...=...+.+++.+-. +.......+.+
T Consensus 85 rp~~~~~~npgv~~~slpDEill~IFs~L~kk~LL~~~~VC~R-----fyr~~~de~lW~~lDl~~r~-i~p~~l~~l~~ 158 (419)
T KOG2120|consen 85 RPKLNRENNPGVSWDSLPDEILLGIFSCLCKKELLKVSGVCKR-----FYRLASDESLWQTLDLTGRN-IHPDVLGRLLS 158 (419)
T ss_pred ccchhcccCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHH-----HhhccccccceeeeccCCCc-cChhHHHHHHh
Confidence 3555555443 33466777777766555444444432 111 11112222456778887754 55555555544
Q ss_pred cCCCCcEEEecCCCCCChhhH-HHHhhcCCCcceEecccccccCchhHHHHhccCcCCceEeccCCcCcChHHHHHHHHh
Q 013172 182 GCKELTHLEINGCHNIGTMGL-ESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEG 260 (448)
Q Consensus 182 ~~~~L~~L~l~~~~~~~~~~~-~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 260 (448)
.....+.+.. ..+....+ +....+-..|+++++++ ..++...+..++++|.+|+.|.+.+ ..++|.....++.
T Consensus 159 --rgV~v~Rlar-~~~~~prlae~~~~frsRlq~lDLS~-s~it~stl~~iLs~C~kLk~lSlEg-~~LdD~I~~~iAk- 232 (419)
T KOG2120|consen 159 --RGVIVFRLAR-SFMDQPRLAEHFSPFRSRLQHLDLSN-SVITVSTLHGILSQCSKLKNLSLEG-LRLDDPIVNTIAK- 232 (419)
T ss_pred --CCeEEEEcch-hhhcCchhhhhhhhhhhhhHHhhcch-hheeHHHHHHHHHHHHhhhhccccc-cccCcHHHHHHhc-
Confidence 3455555543 22222212 22222225799999998 6788888889999999999999998 4577666666654
Q ss_pred CCCCcEEEccccccccCchHhHhhhcCCCCcEEeccccCCcCchHHHhhccCC-CccEEeeeCccc-cChHHHHHHHhhC
Q 013172 261 CQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGC-SLQHLNVSGCHQ-IGDAGIMAIAKGC 338 (448)
Q Consensus 261 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~-~~~~~~~~~~~~~ 338 (448)
-.+|+.|+++.|..++..+...+..+|..|.+|++++|....+.....+.+-. +|+.|+++||.. +....+..+.+.|
T Consensus 233 N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rc 312 (419)
T KOG2120|consen 233 NSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRC 312 (419)
T ss_pred cccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhC
Confidence 67899999999988999999999999999999999999866655444444433 699999998753 4445677788899
Q ss_pred CCCCEEeccCcCCCCHHHHHHHhcCCCCCcEEeccCCCCCChHHHHHHHHcCccCceEeccCCCCCCHHHHHHHHhcCcc
Q 013172 339 PELNYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSHCRQITDVGLSHLVKNCRMLESCHMVYCPGITAAGVATVVSGCAN 418 (448)
Q Consensus 339 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~ 418 (448)
|+|.+||+++|..+++..+..+.+ ++.|++|.++.|-.+....+.++. +.|.|.+|++.|| +++..++.+...+|+
T Consensus 313 p~l~~LDLSD~v~l~~~~~~~~~k-f~~L~~lSlsRCY~i~p~~~~~l~-s~psl~yLdv~g~--vsdt~mel~~e~~~~ 388 (419)
T KOG2120|consen 313 PNLVHLDLSDSVMLKNDCFQEFFK-FNYLQHLSLSRCYDIIPETLLELN-SKPSLVYLDVFGC--VSDTTMELLKEMLSH 388 (419)
T ss_pred CceeeeccccccccCchHHHHHHh-cchheeeehhhhcCCChHHeeeec-cCcceEEEEeccc--cCchHHHHHHHhCcc
Confidence 999999999998888877777754 999999999999988877776665 6899999999987 455566666777888
Q ss_pred ceEEEEeeeeeccccccc
Q 013172 419 IKKVMVEKWKVSERTKRR 436 (448)
Q Consensus 419 L~~L~l~~~~~~~~~~~~ 436 (448)
|+.=.-..+-+..++...
T Consensus 389 lkin~q~~~~iarpv~~~ 406 (419)
T KOG2120|consen 389 LKINCQHFNFIARPVSGQ 406 (419)
T ss_pred ccccceeeeeeecccccc
Confidence 887666666677666643
No 9
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.69 E-value=3.6e-15 Score=134.47 Aligned_cols=63 Identities=24% Similarity=0.172 Sum_probs=26.7
Q ss_pred CCCCCEEeccCcCCCCHHHHHHHhcC----CCCCcEEeccCCCCCChHHHHHHHH---cCccCceEeccCCC
Q 013172 338 CPELNYLDVSVLQNLGDQAMVELGKG----CPLLKDVVLSHCRQITDVGLSHLVK---NCRMLESCHMVYCP 402 (448)
Q Consensus 338 ~~~L~~L~l~~~~~l~~~~~~~~~~~----~~~L~~L~l~~c~~l~~~~~~~~~~---~~~~L~~L~l~~c~ 402 (448)
+++|+.|++++| .+++.++..+... .+.|++|++++| .+++.+...+.+ .+++|+.+++++|.
T Consensus 220 ~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 220 LKSLEVLNLGDN-NLTDAGAAALASALLSPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred cCCCCEEecCCC-cCchHHHHHHHHHHhccCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 444555555554 3444333333322 245555555553 244333322222 23345555555543
No 10
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.68 E-value=5.9e-15 Score=133.07 Aligned_cols=132 Identities=20% Similarity=0.113 Sum_probs=67.2
Q ss_pred EEEeeeeccccccccccchhccccCCcceeeeccccccChhHHHHHHhhh--CCCccEEEeccCCccC--hhhH---HHH
Q 013172 5 VLNFGFCKGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGC--GKSLKSLGIAACVKIT--DVSL---EAV 77 (448)
Q Consensus 5 ~L~~s~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~--~~~~---~~~ 77 (448)
.|+++. ..+++..+..+....++|+.|+++++ .+++.+...+.... .+++++++++++. +. .... ...
T Consensus 2 ~l~L~~---~~l~~~~~~~~~~~l~~L~~l~l~~~-~l~~~~~~~i~~~l~~~~~l~~l~l~~~~-~~~~~~~~~~~~~~ 76 (319)
T cd00116 2 QLSLKG---ELLKTERATELLPKLLCLQVLRLEGN-TLGEEAAKALASALRPQPSLKELCLSLNE-TGRIPRGLQSLLQG 76 (319)
T ss_pred cccccc---CcccccchHHHHHHHhhccEEeecCC-CCcHHHHHHHHHHHhhCCCceEEeccccc-cCCcchHHHHHHHH
Confidence 345533 33444444445455567777777777 45554444443322 1457777777654 22 1111 122
Q ss_pred HhcCCCCceeeccccccchhh---HHHHhhcCCcccEEEeeccCCCcHHHHHHHh---hc-ccccccccccc
Q 013172 78 GSHCKSLETLSLDSEFIHNKG---VHAVAQGCPLLRVLKLQCINVTDEALVAVGN---QC-LSLELLALYSF 142 (448)
Q Consensus 78 ~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~---~~-~~L~~L~l~~~ 142 (448)
...+++|+.|+++++.+.... +..+... ++|++|+++++.+.+.....+.. .+ ++|+.|+++++
T Consensus 77 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n 147 (319)
T cd00116 77 LTKGCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRN 147 (319)
T ss_pred HHhcCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCC
Confidence 234567777777776664322 2222222 44777777766666444333322 12 45555555543
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.65 E-value=9.9e-16 Score=158.71 Aligned_cols=343 Identities=16% Similarity=0.171 Sum_probs=190.8
Q ss_pred cccCCcceeeecccc--ccChh--HHHHHHhhhCCCccEEEeccCCccChhhHHHHHhcCCCCceeeccccccchhhHHH
Q 013172 26 KVCNQLEDLNLRFCE--GLTDT--GLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHA 101 (448)
Q Consensus 26 ~~~~~L~~L~l~~~~--~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 101 (448)
..+++|+.|.+.... ..... .+..-+..+.++|+.|++.+++ +...+ ..+ ...+|++|++.++.+... ..
T Consensus 555 ~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~-l~~lP-~~f--~~~~L~~L~L~~s~l~~L--~~ 628 (1153)
T PLN03210 555 KGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYP-LRCMP-SNF--RPENLVKLQMQGSKLEKL--WD 628 (1153)
T ss_pred hcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCC-CCCCC-CcC--CccCCcEEECcCcccccc--cc
Confidence 456888888886431 00000 0000011222568889888764 22221 111 357899999988776432 22
Q ss_pred HhhcCCcccEEEeeccC-CCcHHHHHHHhhccccccccccccccCChhHHHHHhhcCCCCCEEeecCCccCChhhHHHHH
Q 013172 102 VAQGCPLLRVLKLQCIN-VTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIA 180 (448)
Q Consensus 102 ~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 180 (448)
-...+++|+.|+++++. +... ..+. .+++|+.|++.+|..+. .++.....+++|+.|++++|..+...+..
T Consensus 629 ~~~~l~~Lk~L~Ls~~~~l~~i--p~ls-~l~~Le~L~L~~c~~L~--~lp~si~~L~~L~~L~L~~c~~L~~Lp~~--- 700 (1153)
T PLN03210 629 GVHSLTGLRNIDLRGSKNLKEI--PDLS-MATNLETLKLSDCSSLV--ELPSSIQYLNKLEDLDMSRCENLEILPTG--- 700 (1153)
T ss_pred ccccCCCCCEEECCCCCCcCcC--Cccc-cCCcccEEEecCCCCcc--ccchhhhccCCCCEEeCCCCCCcCccCCc---
Confidence 23457889999997543 2211 1222 37889999998876542 23444556788999999988755442211
Q ss_pred hcCCCCcEEEecCCCCCChhhHHHHhhcCCCcceEecccccccCchhHHHHhccCcCCceEeccCCcCcCh----HHH-H
Q 013172 181 TGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGD----DAI-C 255 (448)
Q Consensus 181 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~-~ 255 (448)
..+++|+.|++.+|..+.. +....++|+.|++.++ .+...+ .. ..+++|++|.+.++..... ..+ .
T Consensus 701 i~l~sL~~L~Lsgc~~L~~-----~p~~~~nL~~L~L~~n-~i~~lP--~~-~~l~~L~~L~l~~~~~~~l~~~~~~l~~ 771 (1153)
T PLN03210 701 INLKSLYRLNLSGCSRLKS-----FPDISTNISWLDLDET-AIEEFP--SN-LRLENLDELILCEMKSEKLWERVQPLTP 771 (1153)
T ss_pred CCCCCCCEEeCCCCCCccc-----cccccCCcCeeecCCC-cccccc--cc-ccccccccccccccchhhccccccccch
Confidence 1477889999988764432 2222367888888763 232211 11 1356777777665321100 000 0
Q ss_pred HHHHhCCCCcEEEccccccccCchHhHhhhcCCCCcEEeccccCCcCchHHHhhccCCCccEEeeeCccccChHHHHHHH
Q 013172 256 SIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIA 335 (448)
Q Consensus 256 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 335 (448)
.....+++|+.|+++++..... ++.....+++|+.|++++|..+... .....+++|+.|++++|..+.. +.
T Consensus 772 ~~~~~~~sL~~L~Ls~n~~l~~--lP~si~~L~~L~~L~Ls~C~~L~~L--P~~~~L~sL~~L~Ls~c~~L~~--~p--- 842 (1153)
T PLN03210 772 LMTMLSPSLTRLFLSDIPSLVE--LPSSIQNLHKLEHLEIENCINLETL--PTGINLESLESLDLSGCSRLRT--FP--- 842 (1153)
T ss_pred hhhhccccchheeCCCCCCccc--cChhhhCCCCCCEEECCCCCCcCee--CCCCCccccCEEECCCCCcccc--cc---
Confidence 1112246777888877644332 2223446777888888777654321 1111345677888877765432 11
Q ss_pred hhCCCCCEEeccCcCCCCHHHHHHHhcCCCCCcEEeccCCCCCChHHHHHHHHcCccCceEeccCCCCCC
Q 013172 336 KGCPELNYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSHCRQITDVGLSHLVKNCRMLESCHMVYCPGIT 405 (448)
Q Consensus 336 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~ 405 (448)
...++|+.|+++++ .++... .-...+++|++|++.+|++++..... ...+++|+.+++++|..++
T Consensus 843 ~~~~nL~~L~Ls~n-~i~~iP--~si~~l~~L~~L~L~~C~~L~~l~~~--~~~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 843 DISTNISDLNLSRT-GIEEVP--WWIEKFSNLSFLDMNGCNNLQRVSLN--ISKLKHLETVDFSDCGALT 907 (1153)
T ss_pred ccccccCEeECCCC-CCccCh--HHHhcCCCCCEEECCCCCCcCccCcc--cccccCCCeeecCCCcccc
Confidence 12356777777776 343221 12245777777777777776653321 2346677777777776554
No 12
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.62 E-value=4.2e-15 Score=142.31 Aligned_cols=264 Identities=28% Similarity=0.437 Sum_probs=150.4
Q ss_pred HHHHhhcCCCCCEEeecCCccCChhhHHHHHhcCCCCcEEEecCC-CCCCh--hhHHHHhhcCCCcceEecccccccCch
Q 013172 150 LHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGC-HNIGT--MGLESIGKFCRNLTELALLYCQRIGNL 226 (448)
Q Consensus 150 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~--~~~~~l~~~~~~L~~L~l~~~~~~~~~ 226 (448)
...+...++.|+.+.+.++..+.+.....+...+++|+.|++.++ ..... .....+...|++|+.|++.++..+++.
T Consensus 180 ~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~ 259 (482)
T KOG1947|consen 180 LLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDI 259 (482)
T ss_pred HHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCch
Confidence 333444456666666666655555545555555666666666541 21111 112234444566666666665555555
Q ss_pred hHHHHhccCcCCceEeccCCcCcChHHHHHHHHhCCCCcEEEccccccccCchHhHhhhcCCCCcEEeccccC---CcCc
Q 013172 227 ALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCD---RVGD 303 (448)
Q Consensus 227 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~---~~~~ 303 (448)
.+..+...|++|+.|.+.+|..+++.++..+...+++|++|++++|..+++.++..+...|++|+.|.+..+. .+++
T Consensus 260 ~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~ 339 (482)
T KOG1947|consen 260 GLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTD 339 (482)
T ss_pred hHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHH
Confidence 5555555566666666665555566666666666666666666666555555555555556665555443332 2333
Q ss_pred hHHHhhccCC--CccEEeeeCccccChHHHHHHHhhCCCCCEEeccCcCCCCHHHHHHHhcCCCCCcEEeccCCCCCChH
Q 013172 304 EALISIGQGC--SLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSHCRQITDV 381 (448)
Q Consensus 304 ~~~~~l~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 381 (448)
..+..+.... .+..+.+..|+.+++..+.... .......+.+.+|+.++ ..+......+..++.|++..|..+++.
T Consensus 340 ~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l~-~~l~~~~~~~~~l~~L~l~~~~~~t~~ 417 (482)
T KOG1947|consen 340 LSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNLT-ESLELRLCRSDSLRVLNLSDCRLVTDK 417 (482)
T ss_pred HHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhcCCcccc-hHHHHHhccCCccceEecccCcccccc
Confidence 3333333322 3444444455544444433332 11111144555666565 555554444555899999999989988
Q ss_pred HHHHHHHcCccCceEeccCCCCCCHHHHHHHHhc
Q 013172 382 GLSHLVKNCRMLESCHMVYCPGITAAGVATVVSG 415 (448)
Q Consensus 382 ~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~ 415 (448)
.+......+..++.+++++|+.++..........
T Consensus 418 ~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 451 (482)
T KOG1947|consen 418 GLRCLADSCSNLKDLDLSGCRVITLKSLEGFASN 451 (482)
T ss_pred chHHHhhhhhccccCCccCcccccchhhhhhhcc
Confidence 8887776678899999999998887776654443
No 13
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.61 E-value=5.8e-15 Score=141.34 Aligned_cols=272 Identities=27% Similarity=0.455 Sum_probs=152.3
Q ss_pred CCCCCEEeecCCcc-CChhhHHHHHhcCCCCcEEEecCCCCCChhhHHHHhhcCCCcceEeccc-ccccCch--hHHHHh
Q 013172 157 CKKLKNLTLSDCYF-LSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLY-CQRIGNL--ALLEVG 232 (448)
Q Consensus 157 ~~~L~~L~l~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~-~~~~~~~--~~~~~~ 232 (448)
...++.+....+.. ........+...++.|+.+.+.+|..+...++..+...++.|++|++.+ +...... ......
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 239 (482)
T KOG1947|consen 160 LANLESLSLSCCGSLLLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLL 239 (482)
T ss_pred HHHHheeeeecccccccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhh
Confidence 34455555544432 2233344444456777777777776666655666666667777777765 2222221 122344
Q ss_pred ccCcCCceEeccCCcCcChHHHHHHHHhCCCCcEEEccccccccCchHhHhhhcCCCCcEEeccccCCcCchHHHhhccC
Q 013172 233 RGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQG 312 (448)
Q Consensus 233 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 312 (448)
..+++|++|+++.|..+++.++..+...|++|++|.+.+|..+++.++..++..++.|++|++++|..+++.++..+...
T Consensus 240 ~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~ 319 (482)
T KOG1947|consen 240 SICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKN 319 (482)
T ss_pred hhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHh
Confidence 45677777777776666777777777667777777766666667777777777777777777777776666666655444
Q ss_pred CC-ccEEeee---CccccChHHHHHHHhhCC-CCCEEeccCcCCCCHHHHHHHhcCCCCCcEEeccCCCCCChHHHHHHH
Q 013172 313 CS-LQHLNVS---GCHQIGDAGIMAIAKGCP-ELNYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSHCRQITDVGLSHLV 387 (448)
Q Consensus 313 ~~-L~~L~l~---~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 387 (448)
++ ++.|.+. +|..++..++........ .+..+.+.+|+.+++..+.... .......+.+.+|+.++ ..+....
T Consensus 320 c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l~-~~l~~~~ 397 (482)
T KOG1947|consen 320 CPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNLT-ESLELRL 397 (482)
T ss_pred CcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhcCCcccc-hHHHHHh
Confidence 43 4444433 233344444443333222 4444444444444444444332 11111134445555555 4444444
Q ss_pred HcCccCceEeccCCCCCCHHHHHHHHhcCccceEEEEeeeeec
Q 013172 388 KNCRMLESCHMVYCPGITAAGVATVVSGCANIKKVMVEKWKVS 430 (448)
Q Consensus 388 ~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 430 (448)
..+..++.|++..|..++...+......+..++.+.+.+++..
T Consensus 398 ~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~ 440 (482)
T KOG1947|consen 398 CRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVI 440 (482)
T ss_pred ccCCccceEecccCccccccchHHHhhhhhccccCCccCcccc
Confidence 4444467777777777666666554433566666666666443
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.60 E-value=7.3e-15 Score=152.32 Aligned_cols=311 Identities=19% Similarity=0.168 Sum_probs=181.4
Q ss_pred CCCceeeccccccchhhHHHHhhcCCcccEEEeeccCCCcHHHHHHHhhccccccccccccccCChhHHHHHhhcCCCCC
Q 013172 82 KSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLK 161 (448)
Q Consensus 82 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 161 (448)
++|+.|.+.++.+..... .+ ...+|+.|++.++.+... ... ...+++|+.|+++++..+.. ++. ...+++|+
T Consensus 589 ~~Lr~L~~~~~~l~~lP~-~f--~~~~L~~L~L~~s~l~~L-~~~-~~~l~~Lk~L~Ls~~~~l~~--ip~-ls~l~~Le 660 (1153)
T PLN03210 589 PKLRLLRWDKYPLRCMPS-NF--RPENLVKLQMQGSKLEKL-WDG-VHSLTGLRNIDLRGSKNLKE--IPD-LSMATNLE 660 (1153)
T ss_pred cccEEEEecCCCCCCCCC-cC--CccCCcEEECcCcccccc-ccc-cccCCCCCEEECCCCCCcCc--CCc-cccCCccc
Confidence 357777776654432211 11 245777777766655421 111 23467777777776543321 122 23467778
Q ss_pred EEeecCCccCChhhHHHHHhcCCCCcEEEecCCCCCChhhHHHHhhcCCCcceEecccccccCchhHHHHhccCcCCceE
Q 013172 162 NLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQAL 241 (448)
Q Consensus 162 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 241 (448)
.|++++|..+.. +......+++|+.|++.+|..+...... . .+++|+.|++++|..+...+ ...++|+.|
T Consensus 661 ~L~L~~c~~L~~--lp~si~~L~~L~~L~L~~c~~L~~Lp~~--i-~l~sL~~L~Lsgc~~L~~~p-----~~~~nL~~L 730 (1153)
T PLN03210 661 TLKLSDCSSLVE--LPSSIQYLNKLEDLDMSRCENLEILPTG--I-NLKSLYRLNLSGCSRLKSFP-----DISTNISWL 730 (1153)
T ss_pred EEEecCCCCccc--cchhhhccCCCCEEeCCCCCCcCccCCc--C-CCCCCCEEeCCCCCCccccc-----cccCCcCee
Confidence 888877764433 2223445677788887777655432211 1 24677777777765433211 224567777
Q ss_pred eccCCcCcChHHHHHHHHhCCCCcEEEccccccccC----chH-hHhhhcCCCCcEEeccccCCcCchHHHhhccCCCcc
Q 013172 242 HLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGN----NGI-VAVGEHCNSLTELSLRFCDRVGDEALISIGQGCSLQ 316 (448)
Q Consensus 242 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 316 (448)
+++++. +.. +.... .+++|++|.+.++..... ..+ ......+++|+.|++++|+.+.. ....+..+++|+
T Consensus 731 ~L~~n~-i~~--lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~-lP~si~~L~~L~ 805 (1153)
T PLN03210 731 DLDETA-IEE--FPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVE-LPSSIQNLHKLE 805 (1153)
T ss_pred ecCCCc-ccc--ccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccc-cChhhhCCCCCC
Confidence 777642 221 11111 356777777765321000 000 01112357899999988754432 334566777899
Q ss_pred EEeeeCccccChHHHHHHHhhCCCCCEEeccCcCCCCHHHHHHHhcCCCCCcEEeccCCCCCChHHHHHHHHcCccCceE
Q 013172 317 HLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSHCRQITDVGLSHLVKNCRMLESC 396 (448)
Q Consensus 317 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L 396 (448)
.|++.+|..+.. ++... .+++|+.|++++|..+... ....++|++|++++ +.++..+. -...+++|+.|
T Consensus 806 ~L~Ls~C~~L~~--LP~~~-~L~sL~~L~Ls~c~~L~~~-----p~~~~nL~~L~Ls~-n~i~~iP~--si~~l~~L~~L 874 (1153)
T PLN03210 806 HLEIENCINLET--LPTGI-NLESLESLDLSGCSRLRTF-----PDISTNISDLNLSR-TGIEEVPW--WIEKFSNLSFL 874 (1153)
T ss_pred EEECCCCCCcCe--eCCCC-CccccCEEECCCCCccccc-----cccccccCEeECCC-CCCccChH--HHhcCCCCCEE
Confidence 999998876653 22111 5788999999998655322 12357899999988 55765332 23468999999
Q ss_pred eccCCCCCCHHHHHHHHhcCccceEEEEeeee
Q 013172 397 HMVYCPGITAAGVATVVSGCANIKKVMVEKWK 428 (448)
Q Consensus 397 ~l~~c~~~~~~~~~~~~~~~~~L~~L~l~~~~ 428 (448)
++.+|+.+.... .....+++|+.+.+++|.
T Consensus 875 ~L~~C~~L~~l~--~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 875 DMNGCNNLQRVS--LNISKLKHLETVDFSDCG 904 (1153)
T ss_pred ECCCCCCcCccC--cccccccCCCeeecCCCc
Confidence 999999886532 334577888888888884
No 15
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.52 E-value=1.7e-16 Score=143.34 Aligned_cols=364 Identities=16% Similarity=0.123 Sum_probs=190.7
Q ss_pred EEeeeeccccccccccchhccccCCcceeeeccccccChhHHHHHHhhhCCCccEEEeccCCccChhhHHHHHhcCCCCc
Q 013172 6 LNFGFCKGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLE 85 (448)
Q Consensus 6 L~~s~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 85 (448)
.|||.|. .+.+.+..-.+..++++.|.|.... +... ..++.. + .+|+.|.+.++.-++.. .. .+.+|.|+
T Consensus 12 vDfsgND---Fsg~~FP~~v~qMt~~~WLkLnrt~-L~~v-PeEL~~-l-qkLEHLs~~HN~L~~vh--GE-Ls~Lp~LR 81 (1255)
T KOG0444|consen 12 VDFSGND---FSGDRFPHDVEQMTQMTWLKLNRTK-LEQV-PEELSR-L-QKLEHLSMAHNQLISVH--GE-LSDLPRLR 81 (1255)
T ss_pred ccccCCc---CCCCcCchhHHHhhheeEEEechhh-hhhC-hHHHHH-H-hhhhhhhhhhhhhHhhh--hh-hccchhhH
Confidence 5666644 3322222222344778888887662 2211 112222 2 57888888887532222 22 24578899
Q ss_pred eeeccccccchhhHHHHhhcCCcccEEEeeccCCCcHHHHHHHhhccccccccccccccCChhHHHHHhhcCCCCCEEee
Q 013172 86 TLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTL 165 (448)
Q Consensus 86 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 165 (448)
.+.+..|++...++..-+-.+..|..|+++.|.+.+ .+..+ +...++-.|++++.+ + +.....++.++..|-.|++
T Consensus 82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~E-vP~~L-E~AKn~iVLNLS~N~-I-etIPn~lfinLtDLLfLDL 157 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLRE-VPTNL-EYAKNSIVLNLSYNN-I-ETIPNSLFINLTDLLFLDL 157 (1255)
T ss_pred HHhhhccccccCCCCchhcccccceeeecchhhhhh-cchhh-hhhcCcEEEEcccCc-c-ccCCchHHHhhHhHhhhcc
Confidence 999988888777766544457889999998887753 22333 225677778887632 2 1112233345566777788
Q ss_pred cCCccCChhhHHHHHhcCCCCcEEEecCCCCCChhhHHHHhhcCCCcceEecccccccCchhHHHHhccCcCCceEeccC
Q 013172 166 SDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVD 245 (448)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 245 (448)
+++. +.. ++.-.+.+..|+.|.++++ .+....+..+... .+|+.|.+++..... ..+...+..+.+|..++++.
T Consensus 158 S~Nr-Le~--LPPQ~RRL~~LqtL~Ls~N-PL~hfQLrQLPsm-tsL~vLhms~TqRTl-~N~Ptsld~l~NL~dvDlS~ 231 (1255)
T KOG0444|consen 158 SNNR-LEM--LPPQIRRLSMLQTLKLSNN-PLNHFQLRQLPSM-TSLSVLHMSNTQRTL-DNIPTSLDDLHNLRDVDLSE 231 (1255)
T ss_pred ccch-hhh--cCHHHHHHhhhhhhhcCCC-hhhHHHHhcCccc-hhhhhhhcccccchh-hcCCCchhhhhhhhhccccc
Confidence 8775 221 2223445677888888773 3333334444332 455555555532211 12222233456777777776
Q ss_pred CcCcChHHHHHHHHhCCCCcEEEccccccccCchHhHhhhcCCCCcEEeccccCCcCchHHHhhccCCCccEEeeeCccc
Q 013172 246 CSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQ 325 (448)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 325 (448)
+ ++. .+......+++|+.|+++++ .++.-.. ....+.+|++|+++.+ +++ ....++.+++.|+.|.+.+ +.
T Consensus 232 N-~Lp--~vPecly~l~~LrrLNLS~N-~iteL~~--~~~~W~~lEtLNlSrN-QLt-~LP~avcKL~kL~kLy~n~-Nk 302 (1255)
T KOG0444|consen 232 N-NLP--IVPECLYKLRNLRRLNLSGN-KITELNM--TEGEWENLETLNLSRN-QLT-VLPDAVCKLTKLTKLYANN-NK 302 (1255)
T ss_pred c-CCC--cchHHHhhhhhhheeccCcC-ceeeeec--cHHHHhhhhhhccccc-hhc-cchHHHhhhHHHHHHHhcc-Cc
Confidence 3 333 22333344677777777774 3443221 1223456777777663 232 2334455555666666555 35
Q ss_pred cChHHHHHHHhhCCCCCEEeccCcCCCCHHHHHHHhcCCCCCcEEeccCCCCCChHHHHHHHHcCccCceEeccCCCCC
Q 013172 326 IGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSHCRQITDVGLSHLVKNCRMLESCHMVYCPGI 404 (448)
Q Consensus 326 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~~ 404 (448)
++-+|++.-+..+.+|+.+...++ .+. .....+ ..|+.|+.|.++...-|+- .....-++.|+.|++..++++
T Consensus 303 L~FeGiPSGIGKL~~Levf~aanN-~LE-lVPEgl-cRC~kL~kL~L~~NrLiTL---PeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 303 LTFEGIPSGIGKLIQLEVFHAANN-KLE-LVPEGL-CRCVKLQKLKLDHNRLITL---PEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred ccccCCccchhhhhhhHHHHhhcc-ccc-cCchhh-hhhHHHHHhcccccceeec---hhhhhhcCCcceeeccCCcCc
Confidence 555555444444555555555554 221 111111 2356666666654322221 111122455666666666554
No 16
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.52 E-value=1.6e-16 Score=143.57 Aligned_cols=386 Identities=15% Similarity=0.124 Sum_probs=231.8
Q ss_pred CCcceeeeccccccChhHHHHHHhhhCCCccEEEeccCCccChhhHHHHHhcCCCCceeeccccccchhhHHHHhhcCCc
Q 013172 29 NQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPL 108 (448)
Q Consensus 29 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 108 (448)
|-.+-.|++++ .++...+-.-.+.. ..++-|.+.... +. ..+..+ .+|.+|+.|++.+|++.... .-...+|.
T Consensus 7 pFVrGvDfsgN-DFsg~~FP~~v~qM-t~~~WLkLnrt~-L~-~vPeEL-~~lqkLEHLs~~HN~L~~vh--GELs~Lp~ 79 (1255)
T KOG0444|consen 7 PFVRGVDFSGN-DFSGDRFPHDVEQM-TQMTWLKLNRTK-LE-QVPEEL-SRLQKLEHLSMAHNQLISVH--GELSDLPR 79 (1255)
T ss_pred ceeecccccCC-cCCCCcCchhHHHh-hheeEEEechhh-hh-hChHHH-HHHhhhhhhhhhhhhhHhhh--hhhccchh
Confidence 55566777777 34432222223333 578888887632 22 122333 46889999999888765432 22345788
Q ss_pred ccEEEeeccCCCcHHH-HHHHhhccccccccccccccCChhHHHHHhhcCCCCCEEeecCCccCChhhHHHHHhcCCCCc
Q 013172 109 LRVLKLQCINVTDEAL-VAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELT 187 (448)
Q Consensus 109 L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 187 (448)
|+.+.++.|++...++ ..+.. +..|..|+++... +. ..+.-....+++-.|+++++..-+ .+ ..+..++..|-
T Consensus 80 LRsv~~R~N~LKnsGiP~diF~-l~dLt~lDLShNq-L~--EvP~~LE~AKn~iVLNLS~N~Iet-IP-n~lfinLtDLL 153 (1255)
T KOG0444|consen 80 LRSVIVRDNNLKNSGIPTDIFR-LKDLTILDLSHNQ-LR--EVPTNLEYAKNSIVLNLSYNNIET-IP-NSLFINLTDLL 153 (1255)
T ss_pred hHHHhhhccccccCCCCchhcc-cccceeeecchhh-hh--hcchhhhhhcCcEEEEcccCcccc-CC-chHHHhhHhHh
Confidence 9999888777655443 33333 7788888887632 21 122222344788888998876222 11 22333566777
Q ss_pred EEEecCCCCCChhhHHHHhhcCCCcceEecccccccCchhHHHHhccCcCCceEeccCCcCcChHHHHHHHHhCCCCcEE
Q 013172 188 HLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKL 267 (448)
Q Consensus 188 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 267 (448)
.|+++++ .+... .+.+ +.+..|++|.++++ .+....+.. +..+++|+.|++++... +-..+......+.+|+.+
T Consensus 154 fLDLS~N-rLe~L-PPQ~-RRL~~LqtL~Ls~N-PL~hfQLrQ-LPsmtsL~vLhms~TqR-Tl~N~Ptsld~l~NL~dv 227 (1255)
T KOG0444|consen 154 FLDLSNN-RLEML-PPQI-RRLSMLQTLKLSNN-PLNHFQLRQ-LPSMTSLSVLHMSNTQR-TLDNIPTSLDDLHNLRDV 227 (1255)
T ss_pred hhccccc-hhhhc-CHHH-HHHhhhhhhhcCCC-hhhHHHHhc-Cccchhhhhhhcccccc-hhhcCCCchhhhhhhhhc
Confidence 7788763 22221 1122 23478899999873 222222211 12345566667766322 212222333457788889
Q ss_pred EccccccccCchHhHhhhcCCCCcEEeccccCCcCchHHHhhccCCCccEEeeeCccccChHHHHHHHhhCCCCCEEecc
Q 013172 268 HIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVS 347 (448)
Q Consensus 268 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 347 (448)
+++.+ .++. ++...-.+++|+.|+++++ .++.-.+ ......+|++|+++. ++++. ++.....+++|+.|.+.
T Consensus 228 DlS~N-~Lp~--vPecly~l~~LrrLNLS~N-~iteL~~-~~~~W~~lEtLNlSr-NQLt~--LP~avcKL~kL~kLy~n 299 (1255)
T KOG0444|consen 228 DLSEN-NLPI--VPECLYKLRNLRRLNLSGN-KITELNM-TEGEWENLETLNLSR-NQLTV--LPDAVCKLTKLTKLYAN 299 (1255)
T ss_pred ccccc-CCCc--chHHHhhhhhhheeccCcC-ceeeeec-cHHHHhhhhhhcccc-chhcc--chHHHhhhHHHHHHHhc
Confidence 98864 3332 3333446789999999884 4543221 222335689999987 45543 34444457889999888
Q ss_pred CcCCCCHHHHHHHhcCCCCCcEEeccCCCCCChHHHHHHHHcCccCceEeccCCCCCCHHHHHHHHhcCccceEEEEeee
Q 013172 348 VLQNLGDQAMVELGKGCPLLKDVVLSHCRQITDVGLSHLVKNCRMLESCHMVYCPGITAAGVATVVSGCANIKKVMVEKW 427 (448)
Q Consensus 348 ~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~L~l~~~ 427 (448)
++ .++-+++..-...+.+|+.+...+ +.+ +...+.+. .|+.|+.|.+..+..++- +..+.-+|.|+.|+++.|
T Consensus 300 ~N-kL~FeGiPSGIGKL~~Levf~aan-N~L-ElVPEglc-RC~kL~kL~L~~NrLiTL---PeaIHlL~~l~vLDlreN 372 (1255)
T KOG0444|consen 300 NN-KLTFEGIPSGIGKLIQLEVFHAAN-NKL-ELVPEGLC-RCVKLQKLKLDHNRLITL---PEAIHLLPDLKVLDLREN 372 (1255)
T ss_pred cC-cccccCCccchhhhhhhHHHHhhc-ccc-ccCchhhh-hhHHHHHhcccccceeec---hhhhhhcCCcceeeccCC
Confidence 87 677666655555678888888877 333 22234444 599999999988887654 344556899999999988
Q ss_pred e--ecccccccCCeeeEEEEeeC
Q 013172 428 K--VSERTKRRAGTVISYLCVDL 448 (448)
Q Consensus 428 ~--~~~~~~~~~~~~~~~~~~~~ 448 (448)
+ +.++.-..+..++.|..+|+
T Consensus 373 pnLVMPPKP~da~~~lefYNIDF 395 (1255)
T KOG0444|consen 373 PNLVMPPKPNDARKKLEFYNIDF 395 (1255)
T ss_pred cCccCCCCcchhhhcceeeecce
Confidence 4 44444455667888888885
No 17
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.36 E-value=2.6e-11 Score=102.51 Aligned_cols=187 Identities=21% Similarity=0.276 Sum_probs=93.0
Q ss_pred CCCcceEecccccccCc---hhHHHHhccCcCCceEeccCCcCcChHHHHHHH------------HhCCCCcEEEccccc
Q 013172 209 CRNLTELALLYCQRIGN---LALLEVGRGCKSLQALHLVDCSSIGDDAICSIA------------EGCQNLKKLHIRRCY 273 (448)
Q Consensus 209 ~~~L~~L~l~~~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~------------~~~~~L~~L~l~~~~ 273 (448)
+|+|+.|+++. +-+.. ..+..+++.+..|++|.+.+|- ++..+-..+. ..-+.|+.+...++
T Consensus 91 ~~~L~~ldLSD-NA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN- 167 (382)
T KOG1909|consen 91 CPKLQKLDLSD-NAFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN- 167 (382)
T ss_pred CCceeEeeccc-cccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-
Confidence 45666666665 22322 2344455556666666666642 3322222211 12356666666654
Q ss_pred cccCchH---hHhhhcCCCCcEEeccccCCcCchHH----HhhccCCCccEEeeeCccccChHHHHHHH---hhCCCCCE
Q 013172 274 KIGNNGI---VAVGEHCNSLTELSLRFCDRVGDEAL----ISIGQGCSLQHLNVSGCHQIGDAGIMAIA---KGCPELNY 343 (448)
Q Consensus 274 ~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~ 343 (448)
.+.+.+. ....+..|.|+.+.+..+ .+...++ ..+...++|+.|+++. +.++..+-..+. ..+|+|+.
T Consensus 168 rlen~ga~~~A~~~~~~~~leevr~~qN-~I~~eG~~al~eal~~~~~LevLdl~D-Ntft~egs~~LakaL~s~~~L~E 245 (382)
T KOG1909|consen 168 RLENGGATALAEAFQSHPTLEEVRLSQN-GIRPEGVTALAEALEHCPHLEVLDLRD-NTFTLEGSVALAKALSSWPHLRE 245 (382)
T ss_pred ccccccHHHHHHHHHhccccceEEEecc-cccCchhHHHHHHHHhCCcceeeeccc-chhhhHHHHHHHHHhcccchhee
Confidence 2333332 223445566777766663 3433333 2344445566666665 344444433332 24556666
Q ss_pred EeccCcCCCCHHHHHHH----hcCCCCCcEEeccCCCCCChHHHHHHHH---cCccCceEeccCCC
Q 013172 344 LDVSVLQNLGDQAMVEL----GKGCPLLKDVVLSHCRQITDVGLSHLVK---NCRMLESCHMVYCP 402 (448)
Q Consensus 344 L~l~~~~~l~~~~~~~~----~~~~~~L~~L~l~~c~~l~~~~~~~~~~---~~~~L~~L~l~~c~ 402 (448)
|++++| .+.+.+..++ ....|+|+.|.+.+| .++..+...+.. .-|.|+.|++++|.
T Consensus 246 l~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 246 LNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred eccccc-ccccccHHHHHHHHhccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 666666 4554444333 234566666666663 355544333221 24556666666664
No 18
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.29 E-value=5.6e-11 Score=100.57 Aligned_cols=176 Identities=20% Similarity=0.244 Sum_probs=86.2
Q ss_pred cCCCCceeeccccccchhhH---HHHhhcCCcccEEEeeccCCCcHHHHHHHhhccccccccccccccCChhHHHHHhhc
Q 013172 80 HCKSLETLSLDSEFIHNKGV---HAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKG 156 (448)
Q Consensus 80 ~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 156 (448)
.||+|++++|++|-+.+.++ ..+++.+..|++|.+.++.+.......++..+ .+|... .....
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al---~~l~~~-----------kk~~~ 155 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRAL---FELAVN-----------KKAAS 155 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHH---HHHHHH-----------hccCC
Confidence 34555555555555544332 23344455555555555555544444443321 111110 00112
Q ss_pred CCCCCEEeecCCccC--ChhhHHHHHhcCCCCcEEEecCCCCCChhhHHH---HhhcCCCcceEecccccccCch---hH
Q 013172 157 CKKLKNLTLSDCYFL--SDMGLEAIATGCKELTHLEINGCHNIGTMGLES---IGKFCRNLTELALLYCQRIGNL---AL 228 (448)
Q Consensus 157 ~~~L~~L~l~~~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---l~~~~~~L~~L~l~~~~~~~~~---~~ 228 (448)
-++|+++....+..- ....+....+..|.|+.+.+.. +.+...++.. -...||+|+.|++.. +.++.. .+
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~q-N~I~~eG~~al~eal~~~~~LevLdl~D-Ntft~egs~~L 233 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQ-NGIRPEGVTALAEALEHCPHLEVLDLRD-NTFTLEGSVAL 233 (382)
T ss_pred CcceEEEEeeccccccccHHHHHHHHHhccccceEEEec-ccccCchhHHHHHHHHhCCcceeeeccc-chhhhHHHHHH
Confidence 367888887776521 1223445556677888888776 3344433322 233467777777766 333322 22
Q ss_pred HHHhccCcCCceEeccCCcCcChHHHHHHH----HhCCCCcEEEcccc
Q 013172 229 LEVGRGCKSLQALHLVDCSSIGDDAICSIA----EGCQNLKKLHIRRC 272 (448)
Q Consensus 229 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~----~~~~~L~~L~l~~~ 272 (448)
...++.+++|+.|++++|. +...+...+. ...|+|+.|.+.++
T Consensus 234 akaL~s~~~L~El~l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~gN 280 (382)
T KOG1909|consen 234 AKALSSWPHLRELNLGDCL-LENEGAIAFVDALKESAPSLEVLELAGN 280 (382)
T ss_pred HHHhcccchheeecccccc-cccccHHHHHHHHhccCCCCceeccCcc
Confidence 2333445666666666653 3333333222 23455666666554
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.28 E-value=1.7e-13 Score=129.57 Aligned_cols=37 Identities=8% Similarity=0.106 Sum_probs=21.0
Q ss_pred CccCceEeccCCCCCCHHHHHHHHhcCccceEEEEeeee
Q 013172 390 CRMLESCHMVYCPGITAAGVATVVSGCANIKKVMVEKWK 428 (448)
Q Consensus 390 ~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~L~l~~~~ 428 (448)
++.|+.++++.+ +++...++.... .|+|++|++.+|.
T Consensus 451 l~qL~~lDlS~N-~L~~~~l~~~~p-~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 451 LPQLKVLDLSCN-NLSEVTLPEALP-SPNLKYLDLSGNT 487 (1081)
T ss_pred cCcceEEecccc-hhhhhhhhhhCC-CcccceeeccCCc
Confidence 566777777543 354444443322 2567777777764
No 20
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.28 E-value=3.5e-13 Score=127.46 Aligned_cols=129 Identities=19% Similarity=0.215 Sum_probs=75.1
Q ss_pred CcEEEccccccccCchHhHhhhcCCCCcEEeccccCCcCchHHHhhccCCCccEEeeeCccccChHHHHHHHhhCCCCCE
Q 013172 264 LKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNY 343 (448)
Q Consensus 264 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 343 (448)
|+.|.+.+ +.+++..++.+ .++++|+.|+++++ .+.......+.++..|+.|+++| +.++. +..-...|+.|+.
T Consensus 361 Lq~Lylan-N~Ltd~c~p~l-~~~~hLKVLhLsyN-rL~~fpas~~~kle~LeeL~LSG-NkL~~--Lp~tva~~~~L~t 434 (1081)
T KOG0618|consen 361 LQELYLAN-NHLTDSCFPVL-VNFKHLKVLHLSYN-RLNSFPASKLRKLEELEELNLSG-NKLTT--LPDTVANLGRLHT 434 (1081)
T ss_pred HHHHHHhc-Ccccccchhhh-ccccceeeeeeccc-ccccCCHHHHhchHHhHHHhccc-chhhh--hhHHHHhhhhhHH
Confidence 44444444 23454444433 24667777777764 23323333344444577777776 34433 2222335666777
Q ss_pred EeccCcCCCCHHHHHHHhcCCCCCcEEeccCCCCCChHHHHHHHHcCccCceEeccCCCCC
Q 013172 344 LDVSVLQNLGDQAMVELGKGCPLLKDVVLSHCRQITDVGLSHLVKNCRMLESCHMVYCPGI 404 (448)
Q Consensus 344 L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~~ 404 (448)
|...++ .+.... .++ ..+.|+.+|++. ++++...+..... .|+|++|+++|+.+.
T Consensus 435 L~ahsN-~l~~fP--e~~-~l~qL~~lDlS~-N~L~~~~l~~~~p-~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 435 LRAHSN-QLLSFP--ELA-QLPQLKVLDLSC-NNLSEVTLPEALP-SPNLKYLDLSGNTRL 489 (1081)
T ss_pred HhhcCC-ceeech--hhh-hcCcceEEeccc-chhhhhhhhhhCC-CcccceeeccCCccc
Confidence 766655 333222 332 479999999985 7788777665543 489999999999853
No 21
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=1.6e-12 Score=112.96 Aligned_cols=111 Identities=18% Similarity=0.163 Sum_probs=47.6
Q ss_pred CCcceeeeccccccChhHHHHHHhhhCCCccEEEeccCCccChhhHHHHHhcCCCCceeeccccccchhhHHHHhhcCCc
Q 013172 29 NQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPL 108 (448)
Q Consensus 29 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 108 (448)
++|++..|.++ .+...+.....+.+ ++++.|+++.+-.-.......+++.+|+|+.|+++.|.+....-......+++
T Consensus 121 kkL~~IsLdn~-~V~~~~~~~~~k~~-~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 121 KKLREISLDNY-RVEDAGIEEYSKIL-PNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred HhhhheeecCc-cccccchhhhhhhC-CcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 44444455444 23333322333333 45555555554323333444444555555555555443321111111112344
Q ss_pred ccEEEeeccCCCcHHHHHHHhhccccccccccc
Q 013172 109 LRVLKLQCINVTDEALVAVGNQCLSLELLALYS 141 (448)
Q Consensus 109 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 141 (448)
|+.|.++.|+++...+..+...+|+|+.|.+..
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~ 231 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEA 231 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhc
Confidence 555555544444444444444445555555443
No 22
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=7.3e-12 Score=108.89 Aligned_cols=133 Identities=20% Similarity=0.182 Sum_probs=64.6
Q ss_pred CcCCceEeccCCcCcChHHHHHHHHhCCCCcEEEccccccccCchHhHhhhcCCCCcEEeccccCCcCchHHHhhccCCC
Q 013172 235 CKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCS 314 (448)
Q Consensus 235 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 314 (448)
+++|+.|.++.|. ++...+..+...+|+|+.|.+.++..+...... ...+..|++|++++++.++.......+.++.
T Consensus 196 l~~lK~L~l~~CG-ls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~--~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~ 272 (505)
T KOG3207|consen 196 LSHLKQLVLNSCG-LSWKDVQWILLTFPSLEVLYLEANEIILIKATS--TKILQTLQELDLSNNNLIDFDQGYKVGTLPG 272 (505)
T ss_pred hhhhheEEeccCC-CCHHHHHHHHHhCCcHHHhhhhcccccceecch--hhhhhHHhhccccCCcccccccccccccccc
Confidence 4556666666653 445555555555666666666654222111111 1124456666666655555555555555566
Q ss_pred ccEEeeeCccccChHHH-----HHHHhhCCCCCEEeccCcCCCCHHHHHHHhcCCCCCcEEec
Q 013172 315 LQHLNVSGCHQIGDAGI-----MAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCPLLKDVVL 372 (448)
Q Consensus 315 L~~L~l~~~~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l 372 (448)
|+.|.+..+ .+++... ......+|+|++|++..++...-..+..+ ...++|+.|.+
T Consensus 273 L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l-~~l~nlk~l~~ 333 (505)
T KOG3207|consen 273 LNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHL-RTLENLKHLRI 333 (505)
T ss_pred hhhhhcccc-CcchhcCCCccchhhhcccccceeeecccCccccccccchh-hccchhhhhhc
Confidence 666666553 2222111 11123456777777766632222222222 23555555554
No 23
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.95 E-value=1.1e-11 Score=106.66 Aligned_cols=43 Identities=9% Similarity=0.216 Sum_probs=33.2
Q ss_pred cCccCceEeccCCCCCCHHHHHHHHhcCccceEEEEeeeeeccccc
Q 013172 389 NCRMLESCHMVYCPGITAAGVATVVSGCANIKKVMVEKWKVSERTK 434 (448)
Q Consensus 389 ~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 434 (448)
.+.+|..|++.++. + ..++..+++|++|++|++.+|++..+..
T Consensus 503 nm~nL~tLDL~nNd-l--q~IPp~LgnmtnL~hLeL~gNpfr~Pr~ 545 (565)
T KOG0472|consen 503 NMRNLTTLDLQNND-L--QQIPPILGNMTNLRHLELDGNPFRQPRH 545 (565)
T ss_pred hhhhcceeccCCCc-h--hhCChhhccccceeEEEecCCccCCCHH
Confidence 47789999997765 2 3455678899999999999998875443
No 24
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.94 E-value=4.2e-09 Score=101.95 Aligned_cols=159 Identities=19% Similarity=0.181 Sum_probs=89.1
Q ss_pred cCCceEeccCCcCcChHHHHHHHHhCCCCcEEEccccccccCchHhHhhhcCCCCcEEeccccCCcCchHHHhhccCCCc
Q 013172 236 KSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCSL 315 (448)
Q Consensus 236 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 315 (448)
.+|++|+++|...+.......+...+|.|++|.+.+ ..+..+.+..+..++|+|..|||++++ +++ +..++.+.+|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~-~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~n--l~GIS~LknL 197 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISG-RQFDNDDFSQLCASFPNLRSLDISGTN-ISN--LSGISRLKNL 197 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecC-ceecchhHHHHhhccCccceeecCCCC-ccC--cHHHhccccH
Confidence 466666666644444444555556667777777766 334444466666667777777776643 332 2445555566
Q ss_pred cEEeeeCccccChHHHHHHHhhCCCCCEEeccCcCCCCHHH-HH---HHhcCCCCCcEEeccCCCCCChHHHHHHHHcCc
Q 013172 316 QHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQA-MV---ELGKGCPLLKDVVLSHCRQITDVGLSHLVKNCR 391 (448)
Q Consensus 316 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~---~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~ 391 (448)
+.|.+.+-+--+...+..+. .+++|+.||++......+.. +. +....+|+|+.||.++ +.++...++.+...-|
T Consensus 198 q~L~mrnLe~e~~~~l~~LF-~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg-Tdi~~~~le~ll~sH~ 275 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQDLIDLF-NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG-TDINEEILEELLNSHP 275 (699)
T ss_pred HHHhccCCCCCchhhHHHHh-cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC-cchhHHHHHHHHHhCc
Confidence 66666654322223344443 46777777777654333221 11 1123467777777776 6667666666666556
Q ss_pred cCceEeccC
Q 013172 392 MLESCHMVY 400 (448)
Q Consensus 392 ~L~~L~l~~ 400 (448)
+|+.+...+
T Consensus 276 ~L~~i~~~~ 284 (699)
T KOG3665|consen 276 NLQQIAALD 284 (699)
T ss_pred cHhhhhhhh
Confidence 666555443
No 25
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.91 E-value=7.6e-09 Score=100.25 Aligned_cols=198 Identities=21% Similarity=0.259 Sum_probs=133.2
Q ss_pred ccccccccchhccccCCcceeeeccccccCh-------hHHHHHH-----hhhCCCccEEEeccCCccChhhHHHHHhcC
Q 013172 14 CYVGDQGLAAVGKVCNQLEDLNLRFCEGLTD-------TGLVDLA-----HGCGKSLKSLGIAACVKITDVSLEAVGSHC 81 (448)
Q Consensus 14 ~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~-------~~~~~~~-----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 81 (448)
..+....+..+.+. .|++|.+.+...+.. ..+..+. .....+|++|++++...+....+..+...+
T Consensus 70 ~~~~~~~~~~l~~~--~L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~W~~kig~~L 147 (699)
T KOG3665|consen 70 VTLQHQTLEMLRKQ--DLESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSNGWPKKIGTML 147 (699)
T ss_pred eecchhHHHHHhhc--cccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhccHHHHHhhhC
Confidence 44555555555443 388888876532111 0111111 112257999999998777777888888889
Q ss_pred CCCceeeccccccchhhHHHHhhcCCcccEEEeeccCCCcHHHHHHHhhccccccccccccccCChhHHHHHhhcCCCCC
Q 013172 82 KSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLK 161 (448)
Q Consensus 82 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 161 (448)
|.|++|.+.+-.+....+..+..++|+|..||+++++++.. ..+. .+++|+.|.+.+..--+...+..++ .+++|+
T Consensus 148 PsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS-~LknLq~L~mrnLe~e~~~~l~~LF-~L~~L~ 223 (699)
T KOG3665|consen 148 PSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGIS-RLKNLQVLSMRNLEFESYQDLIDLF-NLKKLR 223 (699)
T ss_pred cccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHh-ccccHHHHhccCCCCCchhhHHHHh-cccCCC
Confidence 99999999998887888888888999999999999888765 3333 3889999998875533334455555 589999
Q ss_pred EEeecCCccCChh-hHHH---HHhcCCCCcEEEecCCCCCChhhHHHHhhcCCCcceEecc
Q 013172 162 NLTLSDCYFLSDM-GLEA---IATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALL 218 (448)
Q Consensus 162 ~L~l~~~~~~~~~-~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~ 218 (448)
.||++........ -+.. ....+|+|+.|+.++ +.+....++.+...-|+|+.+..-
T Consensus 224 vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg-Tdi~~~~le~ll~sH~~L~~i~~~ 283 (699)
T KOG3665|consen 224 VLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG-TDINEEILEELLNSHPNLQQIAAL 283 (699)
T ss_pred eeeccccccccchHHHHHHHHhcccCccccEEecCC-cchhHHHHHHHHHhCccHhhhhhh
Confidence 9999987643332 1111 122478999999888 566666666666555666665543
No 26
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.90 E-value=4e-09 Score=102.65 Aligned_cols=263 Identities=19% Similarity=0.121 Sum_probs=125.6
Q ss_pred CCccEEEeccCCccChhhHHHHHhcCCCCceeeccccccchhhHHHHhhcCCcccEEEeeccCCCcHHHHHHHhhccccc
Q 013172 56 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLE 135 (448)
Q Consensus 56 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 135 (448)
..-..|+++++. ++..+ ..+ .++|+.|++.+|.++... ...++|++|++++|.++... ...++|+
T Consensus 201 ~~~~~LdLs~~~-LtsLP-~~l---~~~L~~L~L~~N~Lt~LP-----~lp~~Lk~LdLs~N~LtsLP-----~lp~sL~ 265 (788)
T PRK15387 201 NGNAVLNVGESG-LTTLP-DCL---PAHITTLVIPDNNLTSLP-----ALPPELRTLEVSGNQLTSLP-----VLPPGLL 265 (788)
T ss_pred CCCcEEEcCCCC-CCcCC-cch---hcCCCEEEccCCcCCCCC-----CCCCCCcEEEecCCccCccc-----Ccccccc
Confidence 446677777763 44221 222 146788888877765421 22567888888877776421 1246777
Q ss_pred cccccccccCChhHHHHHhhcCCCCCEEeecCCccCChhhHHHHHhcCCCCcEEEecCCCCCChhhHHHHhhcCCCcceE
Q 013172 136 LLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTEL 215 (448)
Q Consensus 136 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L 215 (448)
.|++.++. +. .++. ..++|+.|+++++. ++.. . ...++|+.|+++++ .+... .. ..++|+.|
T Consensus 266 ~L~Ls~N~-L~--~Lp~---lp~~L~~L~Ls~N~-Lt~L--P---~~p~~L~~LdLS~N-~L~~L--p~---lp~~L~~L 327 (788)
T PRK15387 266 ELSIFSNP-LT--HLPA---LPSGLCKLWIFGNQ-LTSL--P---VLPPGLQELSVSDN-QLASL--PA---LPSELCKL 327 (788)
T ss_pred eeeccCCc-hh--hhhh---chhhcCEEECcCCc-cccc--c---ccccccceeECCCC-ccccC--CC---Cccccccc
Confidence 77776532 21 2222 22567777777764 3321 1 12356777777763 23221 11 12456666
Q ss_pred ecccccccCchhHHHHhccCcCCceEeccCCcCcChHHHHHHHHhCCCCcEEEccccccccCchHhHhhhcCCCCcEEec
Q 013172 216 ALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSL 295 (448)
Q Consensus 216 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 295 (448)
++.++ .+...+ ...++|+.|+++++ .+... ....++|+.|++.++ .+.. ++. ..++|+.|++
T Consensus 328 ~Ls~N-~L~~LP-----~lp~~Lq~LdLS~N-~Ls~L-----P~lp~~L~~L~Ls~N-~L~~--LP~---l~~~L~~LdL 389 (788)
T PRK15387 328 WAYNN-QLTSLP-----TLPSGLQELSVSDN-QLASL-----PTLPSELYKLWAYNN-RLTS--LPA---LPSGLKELIV 389 (788)
T ss_pred ccccC-cccccc-----ccccccceEecCCC-ccCCC-----CCCCcccceehhhcc-cccc--Ccc---cccccceEEe
Confidence 66652 222111 11135677777663 23311 111345666666553 2321 111 1245666666
Q ss_pred cccCCcCchHHHhhccCCCccEEeeeCccccChHHHHHHHhhCCCCCEEeccCcCCCCHHHHHHHhcCCCCCcEEeccCC
Q 013172 296 RFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSHC 375 (448)
Q Consensus 296 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c 375 (448)
+++ .+.. +... ..+|+.|+++++ .++. +.. ...+|+.|++++| .++.. ..-...+++|+.|++++
T Consensus 390 s~N-~Lt~--LP~l--~s~L~~LdLS~N-~Lss--IP~---l~~~L~~L~Ls~N-qLt~L--P~sl~~L~~L~~LdLs~- 454 (788)
T PRK15387 390 SGN-RLTS--LPVL--PSELKELMVSGN-RLTS--LPM---LPSGLLSLSVYRN-QLTRL--PESLIHLSSETTVNLEG- 454 (788)
T ss_pred cCC-cccC--CCCc--ccCCCEEEccCC-cCCC--CCc---chhhhhhhhhccC-ccccc--ChHHhhccCCCeEECCC-
Confidence 653 2321 1100 124666666653 3332 111 1234555666655 33321 11112356666666665
Q ss_pred CCCChHHHH
Q 013172 376 RQITDVGLS 384 (448)
Q Consensus 376 ~~l~~~~~~ 384 (448)
+.++...+.
T Consensus 455 N~Ls~~~~~ 463 (788)
T PRK15387 455 NPLSERTLQ 463 (788)
T ss_pred CCCCchHHH
Confidence 335544333
No 27
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.89 E-value=3.6e-10 Score=97.27 Aligned_cols=267 Identities=20% Similarity=0.138 Sum_probs=147.6
Q ss_pred hhHHHHHHhhhCCCccEEEeccCCccChhhHHHHHhcCCCCceeeccccccchhhHHHHhhcCCcccEEEeec-cCCCcH
Q 013172 44 DTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQC-INVTDE 122 (448)
Q Consensus 44 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~ 122 (448)
..++.++...+.+.-.+++|+.+. ++..+...+ +.+++|++|+|++|.|+..+..+|. .++.+.+|.+.+ |++++.
T Consensus 55 ~~GL~eVP~~LP~~tveirLdqN~-I~~iP~~aF-~~l~~LRrLdLS~N~Is~I~p~AF~-GL~~l~~Lvlyg~NkI~~l 131 (498)
T KOG4237|consen 55 GKGLTEVPANLPPETVEIRLDQNQ-ISSIPPGAF-KTLHRLRRLDLSKNNISFIAPDAFK-GLASLLSLVLYGNNKITDL 131 (498)
T ss_pred CCCcccCcccCCCcceEEEeccCC-cccCChhhc-cchhhhceecccccchhhcChHhhh-hhHhhhHHHhhcCCchhhh
Confidence 445666666666778889998874 666555544 6789999999999988777666654 477777777765 777765
Q ss_pred HHHHHHhhccccccccccccccCChhHHHHHhhcCCCCCEEeecCCccCChhhHHH-HHhcCCCCcEEEecCCCCCChhh
Q 013172 123 ALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEA-IATGCKELTHLEINGCHNIGTMG 201 (448)
Q Consensus 123 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~ 201 (448)
.-..+.. +..++.|.+.-+. + +-.....+..++++..|.+.++..-. +.. ..+.+..++.+++.....+.+-.
T Consensus 132 ~k~~F~g-L~slqrLllNan~-i-~Cir~~al~dL~~l~lLslyDn~~q~---i~~~tf~~l~~i~tlhlA~np~icdCn 205 (498)
T KOG4237|consen 132 PKGAFGG-LSSLQRLLLNANH-I-NCIRQDALRDLPSLSLLSLYDNKIQS---ICKGTFQGLAAIKTLHLAQNPFICDCN 205 (498)
T ss_pred hhhHhhh-HHHHHHHhcChhh-h-cchhHHHHHHhhhcchhcccchhhhh---hccccccchhccchHhhhcCccccccc
Confidence 5444433 6777777665321 1 11233344456777777776653100 000 11122344444433222111110
Q ss_pred HHHHh--------------------------------hcCCCcceE--ecccccccCchhHHHHhccCcCCceEeccCCc
Q 013172 202 LESIG--------------------------------KFCRNLTEL--ALLYCQRIGNLALLEVGRGCKSLQALHLVDCS 247 (448)
Q Consensus 202 ~~~l~--------------------------------~~~~~L~~L--~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 247 (448)
+.++. ++.-.++.+ .+.............-+..+++|++|++++ +
T Consensus 206 L~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsn-N 284 (498)
T KOG4237|consen 206 LPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSN-N 284 (498)
T ss_pred cchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCC-C
Confidence 00000 000011111 111111222333334456678888888887 3
Q ss_pred CcChHHHHHHHHhCCCCcEEEccccccccCchHhHhhhcCCCCcEEeccccCCcCchHHHhhccCCCccEEeeeCcc
Q 013172 248 SIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCH 324 (448)
Q Consensus 248 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 324 (448)
.++...- ..+.....+++|.+.++ ++... -..+++++..|+.|++.+ ++++.....++.....|.+|.+-.++
T Consensus 285 ~i~~i~~-~aFe~~a~l~eL~L~~N-~l~~v-~~~~f~~ls~L~tL~L~~-N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 285 KITRIED-GAFEGAAELQELYLTRN-KLEFV-SSGMFQGLSGLKTLSLYD-NQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred ccchhhh-hhhcchhhhhhhhcCcc-hHHHH-HHHhhhccccceeeeecC-CeeEEEecccccccceeeeeehccCc
Confidence 4443322 23344677888888764 33221 123445678888888887 45777777777777778888876544
No 28
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.89 E-value=1.7e-09 Score=105.20 Aligned_cols=243 Identities=17% Similarity=0.110 Sum_probs=124.3
Q ss_pred CCccEEEeccCCccChhhHHHHHhcCCCCceeeccccccchhhHHHHhhcCCcccEEEeeccCCCcHHHHHHHhhccccc
Q 013172 56 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLE 135 (448)
Q Consensus 56 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 135 (448)
++|+.|++.+|. ++... ...++|++|++++|.++... . ..++|+.|+++.|.+... . ...++|+
T Consensus 222 ~~L~~L~L~~N~-Lt~LP-----~lp~~Lk~LdLs~N~LtsLP--~---lp~sL~~L~Ls~N~L~~L--p---~lp~~L~ 285 (788)
T PRK15387 222 AHITTLVIPDNN-LTSLP-----ALPPELRTLEVSGNQLTSLP--V---LPPGLLELSIFSNPLTHL--P---ALPSGLC 285 (788)
T ss_pred cCCCEEEccCCc-CCCCC-----CCCCCCcEEEecCCccCccc--C---cccccceeeccCCchhhh--h---hchhhcC
Confidence 467777777653 33211 12467777777776665321 1 235677777766655421 1 1235566
Q ss_pred cccccccccCChhHHHHHhhcCCCCCEEeecCCccCChhhHHHHHhcCCCCcEEEecCCCCCChhhHHHHhhcCCCcceE
Q 013172 136 LLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTEL 215 (448)
Q Consensus 136 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L 215 (448)
.|+++++. +.. ++. ..++|+.|++++|. +.. +.. ...+|+.|.+.++ .+.. +....++|+.|
T Consensus 286 ~L~Ls~N~-Lt~--LP~---~p~~L~~LdLS~N~-L~~--Lp~---lp~~L~~L~Ls~N-~L~~-----LP~lp~~Lq~L 347 (788)
T PRK15387 286 KLWIFGNQ-LTS--LPV---LPPGLQELSVSDNQ-LAS--LPA---LPSELCKLWAYNN-QLTS-----LPTLPSGLQEL 347 (788)
T ss_pred EEECcCCc-ccc--ccc---cccccceeECCCCc-ccc--CCC---CcccccccccccC-cccc-----ccccccccceE
Confidence 67666532 221 111 23567777777764 322 111 1235666666653 2222 11112467777
Q ss_pred ecccccccCchhHHHHhccCcCCceEeccCCcCcChHHHHHHHHhCCCCcEEEccccccccCchHhHhhhcCCCCcEEec
Q 013172 216 ALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSL 295 (448)
Q Consensus 216 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 295 (448)
++++ +.+...+ ...++|+.|+++++ .+.. +. ...++|+.|+++++ .++. ++ ...++|+.|++
T Consensus 348 dLS~-N~Ls~LP-----~lp~~L~~L~Ls~N-~L~~--LP---~l~~~L~~LdLs~N-~Lt~--LP---~l~s~L~~LdL 409 (788)
T PRK15387 348 SVSD-NQLASLP-----TLPSELYKLWAYNN-RLTS--LP---ALPSGLKELIVSGN-RLTS--LP---VLPSELKELMV 409 (788)
T ss_pred ecCC-CccCCCC-----CCCcccceehhhcc-cccc--Cc---ccccccceEEecCC-cccC--CC---CcccCCCEEEc
Confidence 7776 3343221 11246677777653 2321 11 12346778888764 3332 11 12357888888
Q ss_pred cccCCcCchHHHhhccCCCccEEeeeCccccChHHHHHHHhhCCCCCEEeccCcCCCCHHHHHH
Q 013172 296 RFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVE 359 (448)
Q Consensus 296 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 359 (448)
+++. +... ..+ ..+|+.|++++ +.++. ++.-+..+++|+.|++++| .++......
T Consensus 410 S~N~-LssI--P~l--~~~L~~L~Ls~-NqLt~--LP~sl~~L~~L~~LdLs~N-~Ls~~~~~~ 464 (788)
T PRK15387 410 SGNR-LTSL--PML--PSGLLSLSVYR-NQLTR--LPESLIHLSSETTVNLEGN-PLSERTLQA 464 (788)
T ss_pred cCCc-CCCC--Ccc--hhhhhhhhhcc-Ccccc--cChHHhhccCCCeEECCCC-CCCchHHHH
Confidence 7743 4321 111 12477777776 34543 2222335778888888887 455544443
No 29
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.81 E-value=2.4e-09 Score=88.92 Aligned_cols=239 Identities=16% Similarity=0.085 Sum_probs=153.2
Q ss_pred CCcEEEecCCCCCChhhHHHHhhcCCCcceEecccccccCchhHHHHhccCcCCceEeccCCcCcChHHHHHHHHhCCCC
Q 013172 185 ELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNL 264 (448)
Q Consensus 185 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 264 (448)
.++-+.+.+|..-....+..+...++.++++++.++.--....+..++.++|.|+.|+++.+....+ +........+|
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~--I~~lp~p~~nl 123 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD--IKSLPLPLKNL 123 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc--cccCcccccce
Confidence 4455666665544445566777777888888888843333456667778889999999887432222 22222225688
Q ss_pred cEEEccccccccCchHhHhhhcCCCCcEEeccccC----CcCchHHHhhccCCCccEEeeeCccccChHHHHHHHhhCCC
Q 013172 265 KKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCD----RVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPE 340 (448)
Q Consensus 265 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~----~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 340 (448)
+.|.+.+. .++..........+|.+++|+++.++ .+.+...+.. .+.+++|+..+|...-......+.+.||+
T Consensus 124 ~~lVLNgT-~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~--s~~v~tlh~~~c~~~~w~~~~~l~r~Fpn 200 (418)
T KOG2982|consen 124 RVLVLNGT-GLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDW--STEVLTLHQLPCLEQLWLNKNKLSRIFPN 200 (418)
T ss_pred EEEEEcCC-CCChhhhhhhhhcchhhhhhhhccchhhhhcccccccccc--chhhhhhhcCCcHHHHHHHHHhHHhhccc
Confidence 88888873 46555566667778888999888752 1222222221 12488888888866555556667778999
Q ss_pred CCEEeccCcCCCCHHHHHHHhcCCCCCcEEeccCCCCCCh-HHHHHHHHcCccCceEeccCCCCCCHHH----HHHHHhc
Q 013172 341 LNYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSHCRQITD-VGLSHLVKNCRMLESCHMVYCPGITAAG----VATVVSG 415 (448)
Q Consensus 341 L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~-~~~~~~~~~~~~L~~L~l~~c~~~~~~~----~~~~~~~ 415 (448)
+..+.+..|| +.+.....-...+|.+-.|+++. +++.+ .++.++. .+++|..|.+.+++...... ...++..
T Consensus 201 v~sv~v~e~P-lK~~s~ek~se~~p~~~~LnL~~-~~idswasvD~Ln-~f~~l~dlRv~~~Pl~d~l~~~err~llIaR 277 (418)
T KOG2982|consen 201 VNSVFVCEGP-LKTESSEKGSEPFPSLSCLNLGA-NNIDSWASVDALN-GFPQLVDLRVSENPLSDPLRGGERRFLLIAR 277 (418)
T ss_pred chheeeecCc-ccchhhcccCCCCCcchhhhhcc-cccccHHHHHHHc-CCchhheeeccCCcccccccCCcceEEEEee
Confidence 9999999885 44444444445678888888877 45654 4555554 69999999999987543211 1124566
Q ss_pred CccceEEEEeeeeecccc
Q 013172 416 CANIKKVMVEKWKVSERT 433 (448)
Q Consensus 416 ~~~L~~L~l~~~~~~~~~ 433 (448)
+++++.|+ +-+++.+.
T Consensus 278 L~~v~vLN--GskIss~e 293 (418)
T KOG2982|consen 278 LTKVQVLN--GSKISSRE 293 (418)
T ss_pred ccceEEec--Ccccchhh
Confidence 77777765 44555443
No 30
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.68 E-value=3.2e-09 Score=91.59 Aligned_cols=277 Identities=18% Similarity=0.115 Sum_probs=130.5
Q ss_pred eeEEEeeeeccccccccccchhccccCCcceeeeccccccChhHHHHHHhhhCCCccEEEeccCCccChhhHHHHHhcCC
Q 013172 3 KLVLNFGFCKGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCK 82 (448)
Q Consensus 3 ~~~L~~s~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 82 (448)
+..+.+..|.+..+++..+..+ ++||+|||+++ .++.....++... +++.+|-+.++.++++..-..+ ..+.
T Consensus 69 tveirLdqN~I~~iP~~aF~~l----~~LRrLdLS~N-~Is~I~p~AF~GL--~~l~~Lvlyg~NkI~~l~k~~F-~gL~ 140 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTL----HRLRRLDLSKN-NISFIAPDAFKGL--ASLLSLVLYGNNKITDLPKGAF-GGLS 140 (498)
T ss_pred ceEEEeccCCcccCChhhccch----hhhceeccccc-chhhcChHhhhhh--HhhhHHHhhcCCchhhhhhhHh-hhHH
Confidence 3455666666666666655444 66777777766 4444333333322 3455555554334554433332 4456
Q ss_pred CCceeeccccccchhhHHHHhhcCCcccEEEeeccCCCcHHHHHHHhhccccccccccccccCChhHHHHHh--------
Q 013172 83 SLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVG-------- 154 (448)
Q Consensus 83 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-------- 154 (448)
.++.|.+.-+++.-.-.. .+..++++..|.++.+.+....-..+ ..+..++.+.+.....+.+-.++...
T Consensus 141 slqrLllNan~i~Cir~~-al~dL~~l~lLslyDn~~q~i~~~tf-~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~i 218 (498)
T KOG4237|consen 141 SLQRLLLNANHINCIRQD-ALRDLPSLSLLSLYDNKIQSICKGTF-QGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPI 218 (498)
T ss_pred HHHHHhcChhhhcchhHH-HHHHhhhcchhcccchhhhhhccccc-cchhccchHhhhcCccccccccchhhhHHhhchh
Confidence 666666655554332222 22346666666665544432111111 12344555544432211111111000
Q ss_pred --hcCCCCCEEeecCCccCChhhHHHHHhcCCCCcEE--EecCCCCCChhhHHHHhhcCCCcceEecccccccCchhHHH
Q 013172 155 --KGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHL--EINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLE 230 (448)
Q Consensus 155 --~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L--~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~ 230 (448)
+++.-.....+.... +.......+... ++.+ .+.+...........-.+.+++|++|++++ +.++...-..
T Consensus 219 etsgarc~~p~rl~~~R-i~q~~a~kf~c~---~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsn-N~i~~i~~~a 293 (498)
T KOG4237|consen 219 ETSGARCVSPYRLYYKR-INQEDARKFLCS---LESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSN-NKITRIEDGA 293 (498)
T ss_pred hcccceecchHHHHHHH-hcccchhhhhhh---HHhHHHhhccccCcCCcChHHHHhhcccceEeccCC-Cccchhhhhh
Confidence 011111111111110 111111111111 2222 111111122222223345569999999998 5555443323
Q ss_pred HhccCcCCceEeccCCcCcChHHHHHHHHhCCCCcEEEccccccccCchHhHhhhcCCCCcEEeccccC
Q 013172 231 VGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCD 299 (448)
Q Consensus 231 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 299 (448)
+.....+++|.+..+ .+.. .-..++.++..|+.|+++++ .++.....++ +....|.+|.+-.++
T Consensus 294 -Fe~~a~l~eL~L~~N-~l~~-v~~~~f~~ls~L~tL~L~~N-~it~~~~~aF-~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 294 -FEGAAELQELYLTRN-KLEF-VSSGMFQGLSGLKTLSLYDN-QITTVAPGAF-QTLFSLSTLNLLSNP 357 (498)
T ss_pred -hcchhhhhhhhcCcc-hHHH-HHHHhhhccccceeeeecCC-eeEEEecccc-cccceeeeeehccCc
Confidence 345678999999873 3332 22345567899999999985 4554443332 346778888886644
No 31
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.67 E-value=3.1e-08 Score=82.44 Aligned_cols=191 Identities=18% Similarity=0.191 Sum_probs=92.2
Q ss_pred HHHhcCCCCceeeccccccchh-hHHHHhhcCCcccEEEeeccCCCcHHHHHHHhhccccccccccccccCChhHHHHHh
Q 013172 76 AVGSHCKSLETLSLDSEFIHNK-GVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVG 154 (448)
Q Consensus 76 ~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 154 (448)
.+...+..+++++|.+|.++++ .+.++.+++|.|+.|++++|.+... +..+.-...+|+.|.+.+ ..+.-.....+.
T Consensus 65 ~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~-I~~lp~p~~nl~~lVLNg-T~L~w~~~~s~l 142 (418)
T KOG2982|consen 65 LFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD-IKSLPLPLKNLRVLVLNG-TGLSWTQSTSSL 142 (418)
T ss_pred HHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc-cccCcccccceEEEEEcC-CCCChhhhhhhh
Confidence 3334455555555555555432 2444555555555555555544321 111111134455555544 223333344444
Q ss_pred hcCCCCCEEeecCCc----cCChhhHHHHHhcCCCCcEEEecCCCCCChhhHHHHhhcCCCcceEecccccccCchhHHH
Q 013172 155 KGCKKLKNLTLSDCY----FLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLE 230 (448)
Q Consensus 155 ~~~~~L~~L~l~~~~----~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~ 230 (448)
..+|.++.|+++.+. .+.+...+. .-+.++.|+..+|..........+.+.+|++..+-+..|+ +.+.....
T Consensus 143 ~~lP~vtelHmS~N~~rq~n~Dd~c~e~---~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P-lK~~s~ek 218 (418)
T KOG2982|consen 143 DDLPKVTELHMSDNSLRQLNLDDNCIED---WSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP-LKTESSEK 218 (418)
T ss_pred hcchhhhhhhhccchhhhhccccccccc---cchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc-ccchhhcc
Confidence 445555555555542 011111111 1245666666666544444455566666777777776542 33333333
Q ss_pred HhccCcCCceEeccCCcCcChHHHHHHHHhCCCCcEEEccccc
Q 013172 231 VGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCY 273 (448)
Q Consensus 231 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 273 (448)
-...+|.+..|.++.. .+++.....-..+++.|..|++.+.+
T Consensus 219 ~se~~p~~~~LnL~~~-~idswasvD~Ln~f~~l~dlRv~~~P 260 (418)
T KOG2982|consen 219 GSEPFPSLSCLNLGAN-NIDSWASVDALNGFPQLVDLRVSENP 260 (418)
T ss_pred cCCCCCcchhhhhccc-ccccHHHHHHHcCCchhheeeccCCc
Confidence 3344566666677663 34443333334557777777777644
No 32
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.66 E-value=1.7e-10 Score=99.51 Aligned_cols=107 Identities=16% Similarity=0.086 Sum_probs=55.5
Q ss_pred HHHhhCCCCCEEeccCcCCCCHHHHHHHhcCCCCCcEEeccCCCCCChHHHHHHHHcCccCceEeccCCCCCCHHHHHHH
Q 013172 333 AIAKGCPELNYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSHCRQITDVGLSHLVKNCRMLESCHMVYCPGITAAGVATV 412 (448)
Q Consensus 333 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~ 412 (448)
.....+++|..|+++++ -+.+..... ...-.|+.|+++. +.... ...+......++.+-.+++ .+...... -
T Consensus 429 ~~l~~l~kLt~L~L~NN-~Ln~LP~e~--~~lv~Lq~LnlS~-NrFr~--lP~~~y~lq~lEtllas~n-qi~~vd~~-~ 500 (565)
T KOG0472|consen 429 LELSQLQKLTFLDLSNN-LLNDLPEEM--GSLVRLQTLNLSF-NRFRM--LPECLYELQTLETLLASNN-QIGSVDPS-G 500 (565)
T ss_pred HHHHhhhcceeeecccc-hhhhcchhh--hhhhhhheecccc-ccccc--chHHHhhHHHHHHHHhccc-cccccChH-H
Confidence 33446778888888876 333333222 2355688888876 33221 1111111223343333333 23322222 2
Q ss_pred HhcCccceEEEEeeeeecc-cccccCCeeeEEEEee
Q 013172 413 VSGCANIKKVMVEKWKVSE-RTKRRAGTVISYLCVD 447 (448)
Q Consensus 413 ~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~~~ 447 (448)
+.++.+|..|++.+|.+.. +...+....+..+..|
T Consensus 501 l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~ 536 (565)
T KOG0472|consen 501 LKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELD 536 (565)
T ss_pred hhhhhhcceeccCCCchhhCChhhccccceeEEEec
Confidence 4577899999999997643 2334555556555543
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.64 E-value=3.5e-08 Score=78.31 Aligned_cols=128 Identities=24% Similarity=0.220 Sum_probs=36.1
Q ss_pred CCcceeeeccccccChhHHHHHHhhhCCCccEEEeccCCccCh-hhHHHHHhcCCCCceeeccccccchhhHHHHhhcCC
Q 013172 29 NQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITD-VSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCP 107 (448)
Q Consensus 29 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 107 (448)
.++++|+|.++ .++. +..+...+ .+|+.|++++|. ++. .++ ..+++|++|++++|.++..+- .+...+|
T Consensus 19 ~~~~~L~L~~n-~I~~--Ie~L~~~l-~~L~~L~Ls~N~-I~~l~~l----~~L~~L~~L~L~~N~I~~i~~-~l~~~lp 88 (175)
T PF14580_consen 19 VKLRELNLRGN-QIST--IENLGATL-DKLEVLDLSNNQ-ITKLEGL----PGLPRLKTLDLSNNRISSISE-GLDKNLP 88 (175)
T ss_dssp --------------------S--TT--TT--EEE-TTS---S--TT--------TT--EEE--SS---S-CH-HHHHH-T
T ss_pred ccccccccccc-cccc--ccchhhhh-cCCCEEECCCCC-CccccCc----cChhhhhhcccCCCCCCcccc-chHHhCC
Confidence 34566666665 2332 11222122 456666666654 332 222 235666666666666654321 2223456
Q ss_pred cccEEEeeccCCCcH-HHHHHHhhccccccccccccccCChhH-HHHHhhcCCCCCEEeecC
Q 013172 108 LLRVLKLQCINVTDE-ALVAVGNQCLSLELLALYSFQQFTDKG-LHAVGKGCKKLKNLTLSD 167 (448)
Q Consensus 108 ~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~ 167 (448)
+|++|.+++|.+.+. .+..+. .+|+|+.|++.+.+-..... -..+...+|+|+.||-..
T Consensus 89 ~L~~L~L~~N~I~~l~~l~~L~-~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 89 NLQELYLSNNKISDLNELEPLS-SLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp T--EEE-TTS---SCCCCGGGG-G-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred cCCEEECcCCcCCChHHhHHHH-cCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 666666666665432 122222 35666666666533221111 223344567777776544
No 34
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.55 E-value=2.4e-06 Score=70.51 Aligned_cols=225 Identities=16% Similarity=0.152 Sum_probs=115.2
Q ss_pred CCcceeeeccccccChhHHHHHHhhh--CCCccEEEeccCC--ccChhh------HHHHHhcCCCCceeeccccccchhh
Q 013172 29 NQLEDLNLRFCEGLTDTGLVDLAHGC--GKSLKSLGIAACV--KITDVS------LEAVGSHCKSLETLSLDSEFIHNKG 98 (448)
Q Consensus 29 ~~L~~L~l~~~~~~~~~~~~~~~~~~--~~~L~~L~l~~~~--~~~~~~------~~~~~~~~~~L~~L~l~~~~~~~~~ 98 (448)
..++.++|+++ .+..+....+...+ .++|+..++++.. ...+.. +....-.||.|+.++|+.|.+....
T Consensus 30 d~~~evdLSGN-tigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 30 DELVEVDLSGN-TIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred cceeEEeccCC-cccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 56777788777 45544444443322 1456666666531 111111 1122245788888888777665433
Q ss_pred ---HHHHhhcCCcccEEEeeccCCCcHHHHHHHhhccccccccccccccCChhHHHHHhhcCCCCCEEeecCCccCC--h
Q 013172 99 ---VHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLS--D 173 (448)
Q Consensus 99 ---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~ 173 (448)
+..++..-+.|.+|.+++|.+.......+++.+..|-+.. -...-|.|++.....+.... .
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nK--------------Kaa~kp~Le~vicgrNRlengs~ 174 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNK--------------KAADKPKLEVVICGRNRLENGSK 174 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHh--------------hhccCCCceEEEeccchhccCcH
Confidence 3344455667778888777776655555543222221111 01123778887777665221 1
Q ss_pred hhHHHHHhcCCCCcEEEecCCCCCChhhHHHHh----hcCCCcceEecccccccCch---hHHHHhccCcCCceEeccCC
Q 013172 174 MGLEAIATGCKELTHLEINGCHNIGTMGLESIG----KFCRNLTELALLYCQRIGNL---ALLEVGRGCKSLQALHLVDC 246 (448)
Q Consensus 174 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~----~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~ 246 (448)
..+....+.-.+|+.+.+.. +.+.+.++..+. .++.+|+.|++..+ .++.. .+......++.|+.|.+.+|
T Consensus 175 ~~~a~~l~sh~~lk~vki~q-NgIrpegv~~L~~~gl~y~~~LevLDlqDN-tft~~gS~~La~al~~W~~lrEL~lnDC 252 (388)
T COG5238 175 ELSAALLESHENLKEVKIQQ-NGIRPEGVTMLAFLGLFYSHSLEVLDLQDN-TFTLEGSRYLADALCEWNLLRELRLNDC 252 (388)
T ss_pred HHHHHHHHhhcCceeEEeee-cCcCcchhHHHHHHHHHHhCcceeeecccc-chhhhhHHHHHHHhcccchhhhccccch
Confidence 22233333335788888776 445555444332 23577788887763 33222 22223334556677777665
Q ss_pred cCcChHHHHHHHHh-----CCCCcEEEccc
Q 013172 247 SSIGDDAICSIAEG-----CQNLKKLHIRR 271 (448)
Q Consensus 247 ~~~~~~~~~~~~~~-----~~~L~~L~l~~ 271 (448)
- ++..+...++.. .|+|..|...+
T Consensus 253 l-ls~~G~~~v~~~f~e~~~p~l~~L~~~Y 281 (388)
T COG5238 253 L-LSNEGVKSVLRRFNEKFVPNLMPLPGDY 281 (388)
T ss_pred h-hccccHHHHHHHhhhhcCCCccccccch
Confidence 2 333333333322 34555555444
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.46 E-value=6.7e-08 Score=76.67 Aligned_cols=127 Identities=20% Similarity=0.221 Sum_probs=39.4
Q ss_pred CccEEEeccCCccChhhHHHHHhcCCCCceeeccccccchhhHHHHhhcCCcccEEEeeccCCCcHHHHHHHhhcccccc
Q 013172 57 SLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLEL 136 (448)
Q Consensus 57 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 136 (448)
.+++|++.++. ++. +..+...+.+|+.|++++|.+.... . ...+++|+.|++++|.++.... .+...+|+|++
T Consensus 20 ~~~~L~L~~n~-I~~--Ie~L~~~l~~L~~L~Ls~N~I~~l~--~-l~~L~~L~~L~L~~N~I~~i~~-~l~~~lp~L~~ 92 (175)
T PF14580_consen 20 KLRELNLRGNQ-IST--IENLGATLDKLEVLDLSNNQITKLE--G-LPGLPRLKTLDLSNNRISSISE-GLDKNLPNLQE 92 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S--T--T-----TT--EEE--SS---S-CH-HHHHH-TT--E
T ss_pred ccccccccccc-ccc--ccchhhhhcCCCEEECCCCCCcccc--C-ccChhhhhhcccCCCCCCcccc-chHHhCCcCCE
Confidence 46777777764 332 2223234567777777777765432 2 2236677777777777765321 23234677777
Q ss_pred ccccccccCChh-HHHHHhhcCCCCCEEeecCCccCChhh-HHHHHhcCCCCcEEEec
Q 013172 137 LALYSFQQFTDK-GLHAVGKGCKKLKNLTLSDCYFLSDMG-LEAIATGCKELTHLEIN 192 (448)
Q Consensus 137 L~l~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~ 192 (448)
|.+++. .+.+. .+. ....+|+|+.|++.+++...... -..+...+|+|+.|+-.
T Consensus 93 L~L~~N-~I~~l~~l~-~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 93 LYLSNN-KISDLNELE-PLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp EE-TTS----SCCCCG-GGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred EECcCC-cCCChHHhH-HHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 777653 23221 122 22356777777777776322222 22334457777777654
No 36
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.43 E-value=6.8e-06 Score=67.97 Aligned_cols=211 Identities=16% Similarity=0.127 Sum_probs=102.0
Q ss_pred cCCCCCEEeecCCccCChhhHHHHHhcCC---CCcEEEecCCC--CCChh-------hHHHHhhcCCCcceEeccccccc
Q 013172 156 GCKKLKNLTLSDCYFLSDMGLEAIATGCK---ELTHLEINGCH--NIGTM-------GLESIGKFCRNLTELALLYCQRI 223 (448)
Q Consensus 156 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~---~L~~L~l~~~~--~~~~~-------~~~~l~~~~~~L~~L~l~~~~~~ 223 (448)
.+..++.++++++. +..+.+.++..... +|+..+++... ...+. -++.+ ..||+|+.++++.+ .+
T Consensus 28 ~~d~~~evdLSGNt-igtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aL-lkcp~l~~v~LSDN-Af 104 (388)
T COG5238 28 MMDELVEVDLSGNT-IGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKAL-LKCPRLQKVDLSDN-AF 104 (388)
T ss_pred hhcceeEEeccCCc-ccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHH-hcCCcceeeecccc-cc
Confidence 35677777787776 55555555554443 34444333210 00111 01222 23688888888763 22
Q ss_pred C---chhHHHHhccCcCCceEeccCCcCcChHHHHHHH------------HhCCCCcEEEccccccccCch---HhHhhh
Q 013172 224 G---NLALLEVGRGCKSLQALHLVDCSSIGDDAICSIA------------EGCQNLKKLHIRRCYKIGNNG---IVAVGE 285 (448)
Q Consensus 224 ~---~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~------------~~~~~L~~L~l~~~~~~~~~~---~~~~~~ 285 (448)
. ...+..++++.+.|++|.+.+|. ++...-..+. ..-|.|+.+...++. +.... +....+
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR-lengs~~~~a~~l~ 182 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR-LENGSKELSAALLE 182 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch-hccCcHHHHHHHHH
Confidence 2 23455666777788888887752 3221111111 123566666665532 22221 112222
Q ss_pred cCCCCcEEeccccCCcCchHHHhhc-----cCCCccEEeeeCccccChHHHHH---HHhhCCCCCEEeccCcCCCCHHHH
Q 013172 286 HCNSLTELSLRFCDRVGDEALISIG-----QGCSLQHLNVSGCHQIGDAGIMA---IAKGCPELNYLDVSVLQNLGDQAM 357 (448)
Q Consensus 286 ~~~~L~~L~l~~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~l~~~~~ 357 (448)
.-..|+.+.+.. +.+...++..+. ...+|+.|++.. +.++..+-.. ....++.|++|.+.+| -++..+.
T Consensus 183 sh~~lk~vki~q-NgIrpegv~~L~~~gl~y~~~LevLDlqD-Ntft~~gS~~La~al~~W~~lrEL~lnDC-lls~~G~ 259 (388)
T COG5238 183 SHENLKEVKIQQ-NGIRPEGVTMLAFLGLFYSHSLEVLDLQD-NTFTLEGSRYLADALCEWNLLRELRLNDC-LLSNEGV 259 (388)
T ss_pred hhcCceeEEeee-cCcCcchhHHHHHHHHHHhCcceeeeccc-cchhhhhHHHHHHHhcccchhhhccccch-hhccccH
Confidence 224666666665 345444433322 233566666665 2344333222 2234556666666666 4444444
Q ss_pred HHHhc-----CCCCCcEEeccC
Q 013172 358 VELGK-----GCPLLKDVVLSH 374 (448)
Q Consensus 358 ~~~~~-----~~~~L~~L~l~~ 374 (448)
..+.+ ..|+|..|...+
T Consensus 260 ~~v~~~f~e~~~p~l~~L~~~Y 281 (388)
T COG5238 260 KSVLRRFNEKFVPNLMPLPGDY 281 (388)
T ss_pred HHHHHHhhhhcCCCccccccch
Confidence 33322 245566555554
No 37
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.38 E-value=7.9e-07 Score=87.41 Aligned_cols=13 Identities=15% Similarity=0.335 Sum_probs=6.7
Q ss_pred CCceeeccccccc
Q 013172 83 SLETLSLDSEFIH 95 (448)
Q Consensus 83 ~L~~L~l~~~~~~ 95 (448)
+|+.|++++|.+.
T Consensus 242 ~L~~L~Ls~N~L~ 254 (754)
T PRK15370 242 TIQEMELSINRIT 254 (754)
T ss_pred cccEEECcCCccC
Confidence 4555555555443
No 38
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.38 E-value=1.3e-06 Score=85.88 Aligned_cols=223 Identities=15% Similarity=0.109 Sum_probs=127.1
Q ss_pred eEEEeeeeccccccccccchhccccCCcceeeeccccccChhHHHHHHhhhCCCccEEEeccCCccChhhHHHHHhcCCC
Q 013172 4 LVLNFGFCKGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKS 83 (448)
Q Consensus 4 ~~L~~s~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 83 (448)
..|+++.|.+..+... + +++|+.|+++++ .+.... ..+.++|+.|++++|. +.... ..+ ..+
T Consensus 202 ~~L~Ls~N~LtsLP~~----l---~~nL~~L~Ls~N-~LtsLP-----~~l~~~L~~L~Ls~N~-L~~LP-~~l---~s~ 263 (754)
T PRK15370 202 TTLILDNNELKSLPEN----L---QGNIKTLYANSN-QLTSIP-----ATLPDTIQEMELSINR-ITELP-ERL---PSA 263 (754)
T ss_pred cEEEecCCCCCcCChh----h---ccCCCEEECCCC-ccccCC-----hhhhccccEEECcCCc-cCcCC-hhH---hCC
Confidence 4567777666655432 1 257888888877 344221 1222578999999875 44322 222 258
Q ss_pred CceeeccccccchhhHHHHhhcCCcccEEEeeccCCCcHHHHHHHhhccccccccccccccCChhHHHHHhhcCCCCCEE
Q 013172 84 LETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNL 163 (448)
Q Consensus 84 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 163 (448)
|+.|++++|.+.. +..-. .++|+.|++++|.+.... ..+ .++|+.|+++++. +.. ++.. ..++|+.|
T Consensus 264 L~~L~Ls~N~L~~--LP~~l--~~sL~~L~Ls~N~Lt~LP-~~l---p~sL~~L~Ls~N~-Lt~--LP~~--l~~sL~~L 330 (754)
T PRK15370 264 LQSLDLFHNKISC--LPENL--PEELRYLSVYDNSIRTLP-AHL---PSGITHLNVQSNS-LTA--LPET--LPPGLKTL 330 (754)
T ss_pred CCEEECcCCccCc--ccccc--CCCCcEEECCCCccccCc-ccc---hhhHHHHHhcCCc-ccc--CCcc--ccccceec
Confidence 9999999988763 22211 358999999988876421 111 2468888887643 321 1111 12688888
Q ss_pred eecCCccCChhhHHHHHhcCCCCcEEEecCCCCCChhhHHHHhhcCCCcceEecccccccCchhHHHHhccCcCCceEec
Q 013172 164 TLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHL 243 (448)
Q Consensus 164 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 243 (448)
++++|. ++..+ .. ..++|+.|+++++. +.... ..+ .++|+.|+++++ .+...+. .+. +.|+.|++
T Consensus 331 ~Ls~N~-Lt~LP--~~--l~~sL~~L~Ls~N~-L~~LP-~~l---p~~L~~LdLs~N-~Lt~LP~-~l~---~sL~~LdL 395 (754)
T PRK15370 331 EAGENA-LTSLP--AS--LPPELQVLDVSKNQ-ITVLP-ETL---PPTITTLDVSRN-ALTNLPE-NLP---AALQIMQA 395 (754)
T ss_pred cccCCc-cccCC--hh--hcCcccEEECCCCC-CCcCC-hhh---cCCcCEEECCCC-cCCCCCH-hHH---HHHHHHhh
Confidence 888875 33211 11 13688888888753 33211 112 268888888874 3332211 111 25777777
Q ss_pred cCCcCcCh--HHHHHHHHhCCCCcEEEccccc
Q 013172 244 VDCSSIGD--DAICSIAEGCQNLKKLHIRRCY 273 (448)
Q Consensus 244 ~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~ 273 (448)
+++. +.. ..+..+...++++..+.+.+++
T Consensus 396 s~N~-L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 396 SRNN-LVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred ccCC-cccCchhHHHHhhcCCCccEEEeeCCC
Confidence 7743 321 1233344445777788877753
No 39
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.28 E-value=1.2e-06 Score=69.06 Aligned_cols=105 Identities=22% Similarity=0.322 Sum_probs=75.8
Q ss_pred ccEEeeeCccccChHHHHHHHhhCCCCCEEeccCcCCCCHHHHHHHhcCCCCCcEEeccCCCCCChHHHHHHHHcCccCc
Q 013172 315 LQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSHCRQITDVGLSHLVKNCRMLE 394 (448)
Q Consensus 315 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~ 394 (448)
++.++-+++ .+..+|+..+. .++.++.|.+.+|..+.|.++..+..-.++|+.|++++|++||+.++..+. .+++|+
T Consensus 103 IeaVDAsds-~I~~eGle~L~-~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~-~lknLr 179 (221)
T KOG3864|consen 103 IEAVDASDS-SIMYEGLEHLR-DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL-KLKNLR 179 (221)
T ss_pred EEEEecCCc-hHHHHHHHHHh-ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHH-HhhhhH
Confidence 666666663 56666776654 578888888888888888888888777788888888888888888888887 488888
Q ss_pred eEeccCCCCCCHHHHH--HHHhcCccceEE
Q 013172 395 SCHMVYCPGITAAGVA--TVVSGCANIKKV 422 (448)
Q Consensus 395 ~L~l~~c~~~~~~~~~--~~~~~~~~L~~L 422 (448)
.|.+++-+.+...+.. .+-..+|++...
T Consensus 180 ~L~l~~l~~v~~~e~~~~~Le~aLP~c~I~ 209 (221)
T KOG3864|consen 180 RLHLYDLPYVANLELVQRQLEEALPKCDIV 209 (221)
T ss_pred HHHhcCchhhhchHHHHHHHHHhCccccee
Confidence 8888887766543222 223346665543
No 40
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.28 E-value=4.9e-07 Score=90.29 Aligned_cols=12 Identities=25% Similarity=0.415 Sum_probs=5.9
Q ss_pred CCCCEEeccCcC
Q 013172 339 PELNYLDVSVLQ 350 (448)
Q Consensus 339 ~~L~~L~l~~~~ 350 (448)
|+|+.|.+..|+
T Consensus 770 ~~L~~l~l~~~~ 781 (889)
T KOG4658|consen 770 PHLTSLSLVSCR 781 (889)
T ss_pred CcccEEEEeccc
Confidence 455555555443
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.27 E-value=5.3e-07 Score=90.07 Aligned_cols=230 Identities=19% Similarity=0.178 Sum_probs=111.2
Q ss_pred CCccEEEeccCCc-cChhhHHHHHhcCCCCceeeccccccchhhHHHHhhcCCcccEEEeeccCCCcHHHHHHHhhcccc
Q 013172 56 KSLKSLGIAACVK-ITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSL 134 (448)
Q Consensus 56 ~~L~~L~l~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 134 (448)
+.|++|-+.++.. +... ...+...+|.|++|++++|.-. ..++..+..+-+||+|+++++.+.. .+..+.+ +..|
T Consensus 545 ~~L~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~~~l-~~LP~~I~~Li~LryL~L~~t~I~~-LP~~l~~-Lk~L 620 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGNSSL-SKLPSSIGELVHLRYLDLSDTGISH-LPSGLGN-LKKL 620 (889)
T ss_pred CccceEEEeecchhhhhc-CHHHHhhCcceEEEECCCCCcc-CcCChHHhhhhhhhcccccCCCccc-cchHHHH-HHhh
Confidence 4577777766532 2222 2223355788888888764322 2233333446678888887777652 2223322 5677
Q ss_pred ccccccccccCChhHHHHHhhcCCCCCEEeecCCc-cCChhhHHHHHhcCCCCcEEEecCCCCCChhhHHHHhhcCCCcc
Q 013172 135 ELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCY-FLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLT 213 (448)
Q Consensus 135 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 213 (448)
.+|++....... .++.+...+++|++|.+.... ..+...+..+ ..+.+|+.+.+..... ..+..+.. .++|.
T Consensus 621 ~~Lnl~~~~~l~--~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el-~~Le~L~~ls~~~~s~---~~~e~l~~-~~~L~ 693 (889)
T KOG4658|consen 621 IYLNLEVTGRLE--SIPGILLELQSLRVLRLPRSALSNDKLLLKEL-ENLEHLENLSITISSV---LLLEDLLG-MTRLR 693 (889)
T ss_pred heeccccccccc--cccchhhhcccccEEEeeccccccchhhHHhh-hcccchhhheeecchh---HhHhhhhh-hHHHH
Confidence 777776543221 124444456788888877654 1222222222 3455555555543221 11111111 12222
Q ss_pred ----eEecccccccCchhHHHHhccCcCCceEeccCCcCcChHH--H-HHHHH-hCCCCcEEEccccccccCchHhHhhh
Q 013172 214 ----ELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDA--I-CSIAE-GCQNLKKLHIRRCYKIGNNGIVAVGE 285 (448)
Q Consensus 214 ----~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~-~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~ 285 (448)
.+.+.++. ..........+.+|+.|.+.+|....... . ..... .++++..+.+.+|....+..+..
T Consensus 694 ~~~~~l~~~~~~---~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~--- 767 (889)
T KOG4658|consen 694 SLLQSLSIEGCS---KRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLL--- 767 (889)
T ss_pred HHhHhhhhcccc---cceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhh---
Confidence 22221111 11122223446788888888775422110 0 00001 24455555665654444433322
Q ss_pred cCCCCcEEeccccCCcC
Q 013172 286 HCNSLTELSLRFCDRVG 302 (448)
Q Consensus 286 ~~~~L~~L~l~~~~~~~ 302 (448)
..|+|+.|.+..|..+.
T Consensus 768 f~~~L~~l~l~~~~~~e 784 (889)
T KOG4658|consen 768 FAPHLTSLSLVSCRLLE 784 (889)
T ss_pred ccCcccEEEEecccccc
Confidence 35788888888876543
No 42
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.14 E-value=2.4e-06 Score=67.44 Aligned_cols=106 Identities=16% Similarity=0.164 Sum_probs=79.6
Q ss_pred CCcEEeccccCCcCchHHHhhccCCCccEEeeeCccccChHHHHHHHhhCCCCCEEeccCcCCCCHHHHHHHhcCCCCCc
Q 013172 289 SLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCPLLK 368 (448)
Q Consensus 289 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 368 (448)
.++.++-+++ .+..++++.+..+..++.|.+.+|..+.+.++..+..-.|+|+.|+|++|+.+++.++..+.. +++|+
T Consensus 102 ~IeaVDAsds-~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~-lknLr 179 (221)
T KOG3864|consen 102 KIEAVDASDS-SIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLK-LKNLR 179 (221)
T ss_pred eEEEEecCCc-hHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHH-hhhhH
Confidence 4566777664 477788888888888999999999999888888887778899999999999999998888754 89999
Q ss_pred EEeccCCCCCChHH--HHHHHHcCccCceE
Q 013172 369 DVVLSHCRQITDVG--LSHLVKNCRMLESC 396 (448)
Q Consensus 369 ~L~l~~c~~l~~~~--~~~~~~~~~~L~~L 396 (448)
.|.+.+-+.+.... ...+-..+|+++..
T Consensus 180 ~L~l~~l~~v~~~e~~~~~Le~aLP~c~I~ 209 (221)
T KOG3864|consen 180 RLHLYDLPYVANLELVQRQLEEALPKCDIV 209 (221)
T ss_pred HHHhcCchhhhchHHHHHHHHHhCccccee
Confidence 99887755554322 22333456665543
No 43
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.01 E-value=2e-06 Score=72.07 Aligned_cols=136 Identities=17% Similarity=0.074 Sum_probs=82.6
Q ss_pred cCCCCcEEeccccCCcCchHHHhhccCCCccEEeeeCccccChHHHHHHHhhCCCCCEEeccCcCCCCHHHHHHHhcCCC
Q 013172 286 HCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCP 365 (448)
Q Consensus 286 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 365 (448)
.+..|++++++++ .++. .-+.+.-.+.++.|+++.+ .+...+- ...+++|+.|+++++....-.++. ..+-
T Consensus 282 TWq~LtelDLS~N-~I~~-iDESvKL~Pkir~L~lS~N-~i~~v~n---La~L~~L~~LDLS~N~Ls~~~Gwh---~KLG 352 (490)
T KOG1259|consen 282 TWQELTELDLSGN-LITQ-IDESVKLAPKLRRLILSQN-RIRTVQN---LAELPQLQLLDLSGNLLAECVGWH---LKLG 352 (490)
T ss_pred hHhhhhhcccccc-chhh-hhhhhhhccceeEEecccc-ceeeehh---hhhcccceEeecccchhHhhhhhH---hhhc
Confidence 4567888888874 2321 1122333356888888873 4443222 235688889999887333333443 2477
Q ss_pred CCcEEeccCCCCCChHHHHHHHHcCccCceEeccCCCCCCHHHHHHHHhcCccceEEEEeeeeecccccc
Q 013172 366 LLKDVVLSHCRQITDVGLSHLVKNCRMLESCHMVYCPGITAAGVATVVSGCANIKKVMVEKWKVSERTKR 435 (448)
Q Consensus 366 ~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 435 (448)
++++|.+.+ +.+.+ +..+. .+-+|..|+++++. +..-.-...++++|-|+.+.+.+|++..-..+
T Consensus 353 NIKtL~La~-N~iE~--LSGL~-KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdY 417 (490)
T KOG1259|consen 353 NIKTLKLAQ-NKIET--LSGLR-KLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGNPLAGSVDY 417 (490)
T ss_pred CEeeeehhh-hhHhh--hhhhH-hhhhheeccccccc-hhhHHHhcccccccHHHHHhhcCCCccccchH
Confidence 888888877 43332 22222 35678888888875 33222223457889999999999988755443
No 44
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.96 E-value=2.4e-06 Score=71.55 Aligned_cols=126 Identities=21% Similarity=0.159 Sum_probs=63.6
Q ss_pred cccccccccccccCChhHHHHHhhcCCCCCEEeecCCccCChhhHHHHHhcCCCCcEEEecCCCCCChhhHHHHhhcCCC
Q 013172 132 LSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRN 211 (448)
Q Consensus 132 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 211 (448)
..|+++++++.. + ..+.....-.|.++.|+++.+....... .+.+++|+.|+++++. +.. ...+-..+-+
T Consensus 284 q~LtelDLS~N~-I--~~iDESvKL~Pkir~L~lS~N~i~~v~n----La~L~~L~~LDLS~N~-Ls~--~~Gwh~KLGN 353 (490)
T KOG1259|consen 284 QELTELDLSGNL-I--TQIDESVKLAPKLRRLILSQNRIRTVQN----LAELPQLQLLDLSGNL-LAE--CVGWHLKLGN 353 (490)
T ss_pred hhhhhccccccc-h--hhhhhhhhhccceeEEeccccceeeehh----hhhcccceEeecccch-hHh--hhhhHhhhcC
Confidence 456677776521 2 2233333445777777777765333222 2346777777777632 211 2222223466
Q ss_pred cceEecccccccCchhHHHHhccCcCCceEeccCCcCcCh-HHHHHHHHhCCCCcEEEccccc
Q 013172 212 LTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGD-DAICSIAEGCQNLKKLHIRRCY 273 (448)
Q Consensus 212 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~ 273 (448)
+++|.+.+ +.+.+. .-+.++-+|..|++.++ .+.. +.+..+ .++|.|+++.+.+++
T Consensus 354 IKtL~La~-N~iE~L---SGL~KLYSLvnLDl~~N-~Ie~ldeV~~I-G~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 354 IKTLKLAQ-NKIETL---SGLRKLYSLVNLDLSSN-QIEELDEVNHI-GNLPCLETLRLTGNP 410 (490)
T ss_pred Eeeeehhh-hhHhhh---hhhHhhhhheecccccc-chhhHHHhccc-ccccHHHHHhhcCCC
Confidence 77777765 222211 11233556777777763 2322 222222 346777777776654
No 45
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.63 E-value=2e-05 Score=51.01 Aligned_cols=60 Identities=28% Similarity=0.308 Sum_probs=34.2
Q ss_pred CCccEEEeccCCccChhhHHHHHhcCCCCceeeccccccchhhHHHHhhcCCcccEEEeeccC
Q 013172 56 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCIN 118 (448)
Q Consensus 56 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 118 (448)
++|++|++++|. ++..... ....+++|++|++++|.+....... +..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n~-l~~i~~~-~f~~l~~L~~L~l~~N~l~~i~~~~-f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNK-LTEIPPD-SFSNLPNLETLDLSNNNLTSIPPDA-FSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSST-ESEECTT-TTTTGTTESEEEETSSSESEEETTT-TTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCC-CCccCHH-HHcCCCCCCEeEccCCccCccCHHH-HcCCCCCCEEeCcCCc
Confidence 356777777663 4433222 2245677777777776665433322 3456777777776654
No 46
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.44 E-value=1.9e-05 Score=51.04 Aligned_cols=58 Identities=24% Similarity=0.217 Sum_probs=37.4
Q ss_pred CCCceeeccccccchhhHHHHhhcCCcccEEEeeccCCCcHHHHHHHhhccccccccccc
Q 013172 82 KSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYS 141 (448)
Q Consensus 82 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 141 (448)
|+|++|++++|.+...... .+..+++|++|++++|.+.......+ ..+++|++|++++
T Consensus 1 p~L~~L~l~~n~l~~i~~~-~f~~l~~L~~L~l~~N~l~~i~~~~f-~~l~~L~~L~l~~ 58 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPD-SFSNLPNLETLDLSNNNLTSIPPDAF-SNLPNLRYLDLSN 58 (61)
T ss_dssp TTESEEEETSSTESEECTT-TTTTGTTESEEEETSSSESEEETTTT-TTSTTESEEEETS
T ss_pred CcCcEEECCCCCCCccCHH-HHcCCCCCCEeEccCCccCccCHHHH-cCCCCCCEEeCcC
Confidence 5788888888877654333 33457888888888777764433333 2356666666655
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.29 E-value=3.2e-05 Score=72.99 Aligned_cols=202 Identities=20% Similarity=0.178 Sum_probs=97.4
Q ss_pred HHHHhhcCCCCCEEeecCCccCChh-hHHHHHhcCCCCcEEEecCCCCCChhhHHHHhhcCCCcceEecccccccCchhH
Q 013172 150 LHAVGKGCKKLKNLTLSDCYFLSDM-GLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLAL 228 (448)
Q Consensus 150 ~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~ 228 (448)
+..+..-+++++.+.+-..+.-... ++. ++ .+.+|+.|.+.+|+--...++..+. .+|++|.-.+. + ..+
T Consensus 76 Lq~i~d~lqkt~~lkl~~~pa~~pt~pi~-if-pF~sLr~LElrg~~L~~~~GL~~lr---~qLe~LIC~~S--l--~Al 146 (1096)
T KOG1859|consen 76 LQRILDFLQKTKVLKLLPSPARDPTEPIS-IF-PFRSLRVLELRGCDLSTAKGLQELR---HQLEKLICHNS--L--DAL 146 (1096)
T ss_pred HHHHHHHHhhheeeeecccCCCCCCCCce-ec-cccceeeEEecCcchhhhhhhHHHH---Hhhhhhhhhcc--H--HHH
Confidence 3334444566666666544311111 222 11 3678999999998755555555554 45666655431 1 111
Q ss_pred HHHhcc-----C-----cCCceEeccCCcCcChHHHHHHHHhCCCCcEEEccccccccCchHhHhhhcCCCCcEEecccc
Q 013172 229 LEVGRG-----C-----KSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFC 298 (448)
Q Consensus 229 ~~~~~~-----~-----~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 298 (448)
..++.. + ..|...+.+.+ .+. .+.....-+|.++.|+++++ ++.+.. ..+.|+.|++|+++++
T Consensus 147 ~~v~ascggd~~ns~~Wn~L~~a~fsyN-~L~--~mD~SLqll~ale~LnLshN-k~~~v~---~Lr~l~~LkhLDlsyN 219 (1096)
T KOG1859|consen 147 RHVFASCGGDISNSPVWNKLATASFSYN-RLV--LMDESLQLLPALESLNLSHN-KFTKVD---NLRRLPKLKHLDLSYN 219 (1096)
T ss_pred HHHHHHhccccccchhhhhHhhhhcchh-hHH--hHHHHHHHHHHhhhhccchh-hhhhhH---HHHhcccccccccccc
Confidence 111111 1 22333333331 111 12222333567888888874 344322 3356788888888774
Q ss_pred CCcCchHHHhhccCCCccEEeeeCccccChHHHHHHHhhCCCCCEEeccCcCCCCH-HHHHHHhcCCCCCcEEeccCC
Q 013172 299 DRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGD-QAMVELGKGCPLLKDVVLSHC 375 (448)
Q Consensus 299 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-~~~~~~~~~~~~L~~L~l~~c 375 (448)
. +....-... ..|.|..|.++++ .++. +..+ .++.+|+.||+++| .+.+ ..+..+ ..+..|+.|++.+.
T Consensus 220 ~-L~~vp~l~~-~gc~L~~L~lrnN-~l~t--L~gi-e~LksL~~LDlsyN-ll~~hseL~pL-wsLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 220 C-LRHVPQLSM-VGCKLQLLNLRNN-ALTT--LRGI-ENLKSLYGLDLSYN-LLSEHSELEPL-WSLSSLIVLWLEGN 289 (1096)
T ss_pred h-hccccccch-hhhhheeeeeccc-HHHh--hhhH-HhhhhhhccchhHh-hhhcchhhhHH-HHHHHHHHHhhcCC
Confidence 2 221111010 1245777777763 3322 2222 24566777777765 2222 112111 23456677777663
No 48
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.26 E-value=2e-06 Score=65.91 Aligned_cols=34 Identities=29% Similarity=0.384 Sum_probs=14.4
Q ss_pred CCCceeeccccccchhhHHHHhhcCCcccEEEeecc
Q 013172 82 KSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCI 117 (448)
Q Consensus 82 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 117 (448)
.+|+.|++.+|++.... .-++.+++|+.|+++.+
T Consensus 56 ~nlevln~~nnqie~lp--~~issl~klr~lnvgmn 89 (264)
T KOG0617|consen 56 KNLEVLNLSNNQIEELP--TSISSLPKLRILNVGMN 89 (264)
T ss_pred hhhhhhhcccchhhhcC--hhhhhchhhhheecchh
Confidence 44555555554443221 11223445555554433
No 49
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.20 E-value=9.1e-06 Score=62.36 Aligned_cols=149 Identities=23% Similarity=0.217 Sum_probs=93.2
Q ss_pred CCcceeeeccccccCh--hHHHHHHhhhCCCccEEEeccCCccChhhHHHHHhcCCCCceeeccccccchhhHHHHhhcC
Q 013172 29 NQLEDLNLRFCEGLTD--TGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGC 106 (448)
Q Consensus 29 ~~L~~L~l~~~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 106 (448)
++++.|.++++ .++. ..+.++ .+|+.|++.++. +.+... -++.+|+|+.|++.-|.+.. ...-+..+
T Consensus 33 s~ITrLtLSHN-Kl~~vppnia~l-----~nlevln~~nnq-ie~lp~--~issl~klr~lnvgmnrl~~--lprgfgs~ 101 (264)
T KOG0617|consen 33 SNITRLTLSHN-KLTVVPPNIAEL-----KNLEVLNLSNNQ-IEELPT--SISSLPKLRILNVGMNRLNI--LPRGFGSF 101 (264)
T ss_pred hhhhhhhcccC-ceeecCCcHHHh-----hhhhhhhcccch-hhhcCh--hhhhchhhhheecchhhhhc--CccccCCC
Confidence 67888999987 3332 233333 589999999874 544332 23568999999998665432 11223347
Q ss_pred CcccEEEeeccCCCcHHHHHHHhhccccccccccccccCChhHHHHHhhcCCCCCEEeecCCccCChhhHHHHHhcCCCC
Q 013172 107 PLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKEL 186 (448)
Q Consensus 107 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 186 (448)
|.|+.|++.++++.+..+..-.-.+..|+.|.+++.. + +.++.-...+.+|+.|.+.++..+. +..-...+..|
T Consensus 102 p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-f--e~lp~dvg~lt~lqil~lrdndll~---lpkeig~lt~l 175 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-F--EILPPDVGKLTNLQILSLRDNDLLS---LPKEIGDLTRL 175 (264)
T ss_pred chhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-c--ccCChhhhhhcceeEEeeccCchhh---CcHHHHHHHHH
Confidence 8999999998888765443322235777778776532 1 1222223456788888888776332 22223346778
Q ss_pred cEEEecCC
Q 013172 187 THLEINGC 194 (448)
Q Consensus 187 ~~L~l~~~ 194 (448)
++|++.+.
T Consensus 176 relhiqgn 183 (264)
T KOG0617|consen 176 RELHIQGN 183 (264)
T ss_pred HHHhcccc
Confidence 88888873
No 50
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.14 E-value=0.00012 Score=60.97 Aligned_cols=101 Identities=24% Similarity=0.284 Sum_probs=62.1
Q ss_pred CCcceeeeccccccChhHHHHHHhhhCCCccEEEeccCCccChhhHHHHHhcCCCCceeeccccccchhhHHHHhhcCCc
Q 013172 29 NQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPL 108 (448)
Q Consensus 29 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 108 (448)
.+.+.|+..+| .+++..+ .... +.|+.|.|+-|. ++.. ..+ ..|.+|++|.|..|.|.+..=-+..+++|+
T Consensus 19 ~~vkKLNcwg~-~L~DIsi---c~kM-p~lEVLsLSvNk-IssL--~pl-~rCtrLkElYLRkN~I~sldEL~YLknlps 89 (388)
T KOG2123|consen 19 ENVKKLNCWGC-GLDDISI---CEKM-PLLEVLSLSVNK-ISSL--APL-QRCTRLKELYLRKNCIESLDELEYLKNLPS 89 (388)
T ss_pred HHhhhhcccCC-CccHHHH---HHhc-ccceeEEeeccc-cccc--hhH-HHHHHHHHHHHHhcccccHHHHHHHhcCch
Confidence 46677888887 5666544 3333 678888888764 4332 222 457888888888877766554555667888
Q ss_pred ccEEEeeccCCCcHH----HHHHHhhcccccccc
Q 013172 109 LRVLKLQCINVTDEA----LVAVGNQCLSLELLA 138 (448)
Q Consensus 109 L~~L~l~~~~~~~~~----~~~~~~~~~~L~~L~ 138 (448)
|+.|.+..|...... -..+...+|+|++|+
T Consensus 90 Lr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 90 LRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 888888644432221 122334467777665
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.03 E-value=0.00014 Score=68.80 Aligned_cols=139 Identities=22% Similarity=0.251 Sum_probs=67.2
Q ss_pred HHHHHHhCCCCcEEEccccccccCchHhHhhhcCCCCcEEeccccCCcCchHHHhhccCCCccEEee-----------eC
Q 013172 254 ICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNV-----------SG 322 (448)
Q Consensus 254 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l-----------~~ 322 (448)
+..+..-+++++.+.+-..+.-...+...++ .+..|+.|.+.+|+--...++..+-+ .|++|-- ..
T Consensus 76 Lq~i~d~lqkt~~lkl~~~pa~~pt~pi~if-pF~sLr~LElrg~~L~~~~GL~~lr~--qLe~LIC~~Sl~Al~~v~as 152 (1096)
T KOG1859|consen 76 LQRILDFLQKTKVLKLLPSPARDPTEPISIF-PFRSLRVLELRGCDLSTAKGLQELRH--QLEKLICHNSLDALRHVFAS 152 (1096)
T ss_pred HHHHHHHHhhheeeeecccCCCCCCCCceec-cccceeeEEecCcchhhhhhhHHHHH--hhhhhhhhccHHHHHHHHHH
Confidence 3444455667777777654322222222333 36799999999987433333333221 1222110 00
Q ss_pred cc-ccCh--------------HH---HHHHHhhCCCCCEEeccCcCCCCHHHHHHHhcCCCCCcEEeccCCCCCChHHHH
Q 013172 323 CH-QIGD--------------AG---IMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSHCRQITDVGLS 384 (448)
Q Consensus 323 ~~-~~~~--------------~~---~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 384 (448)
|. .+++ .. +..-+.-+|.++.|+++.| .+.+.. .+ ..|+.|++||+++ +.++..+-.
T Consensus 153 cggd~~ns~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshN-k~~~v~--~L-r~l~~LkhLDlsy-N~L~~vp~l 227 (1096)
T KOG1859|consen 153 CGGDISNSPVWNKLATASFSYNRLVLMDESLQLLPALESLNLSHN-KFTKVD--NL-RRLPKLKHLDLSY-NCLRHVPQL 227 (1096)
T ss_pred hccccccchhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchh-hhhhhH--HH-Hhccccccccccc-chhcccccc
Confidence 00 0000 00 1111123477888888887 444333 22 4588888888887 444432221
Q ss_pred HHHHcCccCceEeccCCC
Q 013172 385 HLVKNCRMLESCHMVYCP 402 (448)
Q Consensus 385 ~~~~~~~~L~~L~l~~c~ 402 (448)
... +|. |+.|.+++|.
T Consensus 228 ~~~-gc~-L~~L~lrnN~ 243 (1096)
T KOG1859|consen 228 SMV-GCK-LQLLNLRNNA 243 (1096)
T ss_pred chh-hhh-heeeeecccH
Confidence 111 222 6666665554
No 52
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.01 E-value=0.00023 Score=58.98 Aligned_cols=87 Identities=23% Similarity=0.241 Sum_probs=41.5
Q ss_pred CCCCceeeccccccc-hhhHHHHhhcCCcccEEEeeccCCCcH-HHHHHHhhccccccccccccccCChh-HHHHHhhcC
Q 013172 81 CKSLETLSLDSEFIH-NKGVHAVAQGCPLLRVLKLQCINVTDE-ALVAVGNQCLSLELLALYSFQQFTDK-GLHAVGKGC 157 (448)
Q Consensus 81 ~~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~ 157 (448)
+|+|++|.++.|... ..++..++..+|+|++++++.|++.+. .+..+ +.+++|..|++.+|....-. --..++.-+
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl-~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll 142 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPL-KELENLKSLDLFNCSVTNLDDYREKVFLLL 142 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchh-hhhcchhhhhcccCCccccccHHHHHHHHh
Confidence 356666666655221 223444444556666666666655531 11222 22455666666655432211 122333445
Q ss_pred CCCCEEeecCC
Q 013172 158 KKLKNLTLSDC 168 (448)
Q Consensus 158 ~~L~~L~l~~~ 168 (448)
++|+.|+-...
T Consensus 143 ~~L~~LD~~dv 153 (260)
T KOG2739|consen 143 PSLKYLDGCDV 153 (260)
T ss_pred hhhcccccccc
Confidence 66666655543
No 53
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=97.00 E-value=0.00096 Score=34.24 Aligned_cols=22 Identities=50% Similarity=0.803 Sum_probs=10.9
Q ss_pred CCCcEEeccCCCCCChHHHHHH
Q 013172 365 PLLKDVVLSHCRQITDVGLSHL 386 (448)
Q Consensus 365 ~~L~~L~l~~c~~l~~~~~~~~ 386 (448)
++|++|++++|+.+++.++..+
T Consensus 2 ~~L~~L~l~~C~~itD~gl~~l 23 (26)
T smart00367 2 PNLRELDLSGCTNITDEGLQAL 23 (26)
T ss_pred CCCCEeCCCCCCCcCHHHHHHH
Confidence 4455555555555555544444
No 54
>PLN03150 hypothetical protein; Provisional
Probab=96.89 E-value=0.0019 Score=63.51 Aligned_cols=108 Identities=17% Similarity=0.134 Sum_probs=71.5
Q ss_pred CCceeeccccccchhhHHHHhhcCCcccEEEeeccCCCcHHHHHHHhhccccccccccccccCChhHHHHHhhcCCCCCE
Q 013172 83 SLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKN 162 (448)
Q Consensus 83 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 162 (448)
.++.|+|+++.+.......+ ..+++|+.|++++|.+.......+.. +++|+.|+++++. +... ++.....+++|+.
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i-~~L~~L~~L~Ls~N~l~g~iP~~~~~-l~~L~~LdLs~N~-lsg~-iP~~l~~L~~L~~ 494 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDI-SKLRHLQSINLSGNSIRGNIPPSLGS-ITSLEVLDLSYNS-FNGS-IPESLGQLTSLRI 494 (623)
T ss_pred EEEEEECCCCCccccCCHHH-hCCCCCCEEECCCCcccCcCChHHhC-CCCCCEEECCCCC-CCCC-CchHHhcCCCCCE
Confidence 37888998887765444444 35889999999988887555545544 8999999998753 4332 3444557899999
Q ss_pred EeecCCccCChhhHHHHHhcCCCCcEEEecCCC
Q 013172 163 LTLSDCYFLSDMGLEAIATGCKELTHLEINGCH 195 (448)
Q Consensus 163 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 195 (448)
|+++++. +....-..+.....++..+++.++.
T Consensus 495 L~Ls~N~-l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 495 LNLNGNS-LSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred EECcCCc-ccccCChHHhhccccCceEEecCCc
Confidence 9999886 3322112222223466778887754
No 55
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.89 E-value=0.00029 Score=58.85 Aligned_cols=38 Identities=24% Similarity=0.315 Sum_probs=16.6
Q ss_pred CCCCcEEeccCCCCCChHHHHHHHHcCccCceEeccCCC
Q 013172 364 CPLLKDVVLSHCRQITDVGLSHLVKNCRMLESCHMVYCP 402 (448)
Q Consensus 364 ~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~ 402 (448)
|++|++|++.. +.|.+..-......+|+|+.|++..|+
T Consensus 62 CtrLkElYLRk-N~I~sldEL~YLknlpsLr~LWL~ENP 99 (388)
T KOG2123|consen 62 CTRLKELYLRK-NCIESLDELEYLKNLPSLRTLWLDENP 99 (388)
T ss_pred HHHHHHHHHHh-cccccHHHHHHHhcCchhhhHhhccCC
Confidence 45555555443 234333333333345555555554443
No 56
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.86 E-value=0.00097 Score=62.49 Aligned_cols=183 Identities=23% Similarity=0.315 Sum_probs=98.2
Q ss_pred ccEEEeccCCccChhhHHHHHh---cCCCCceeeccccccchhhHHHHhhcCC----cccEEEeeccCCCcHHHHHHHhh
Q 013172 58 LKSLGIAACVKITDVSLEAVGS---HCKSLETLSLDSEFIHNKGVHAVAQGCP----LLRVLKLQCINVTDEALVAVGNQ 130 (448)
Q Consensus 58 L~~L~l~~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~----~L~~L~l~~~~~~~~~~~~~~~~ 130 (448)
+..|.+.+|. +.+.+...+.+ ..+.|+.|++++|.+.+.+...+...++ .++.|.+..+.++......+...
T Consensus 89 l~~L~L~~~~-l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 89 LLHLSLANNR-LGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred HHHhhhhhCc-cccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 6778888875 55555555543 4578899999999888777666654443 45667776666666555444433
Q ss_pred ---ccccccccccccccCChhHHHHHhh-------cCCCCCEEeecCCccCChhhHHHHHhc---CCC-CcEEEecCCCC
Q 013172 131 ---CLSLELLALYSFQQFTDKGLHAVGK-------GCKKLKNLTLSDCYFLSDMGLEAIATG---CKE-LTHLEINGCHN 196 (448)
Q Consensus 131 ---~~~L~~L~l~~~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~---~~~-L~~L~l~~~~~ 196 (448)
.+.++.++++.+... ..+...+.. ...++++|++..|. ++......+... .+. +..+++.. +.
T Consensus 168 L~~~~~l~~l~l~~n~l~-~~g~~~l~~~l~~~~~~~~~le~L~L~~~~-~t~~~c~~l~~~l~~~~~~~~el~l~~-n~ 244 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLI-ELGLLVLSQALESAASPLSSLETLKLSRCG-VTSSSCALLDEVLASGESLLRELDLAS-NK 244 (478)
T ss_pred HhcccchhHHHHHhcccc-hhhhHHHhhhhhhhhcccccHHHHhhhhcC-cChHHHHHHHHHHhccchhhHHHHHHh-cC
Confidence 466777777654322 222222221 23456777777765 443333332222 223 44455554 34
Q ss_pred CChhhHHHHhhcC----CCcceEecccccccCch---hHHHHhccCcCCceEeccC
Q 013172 197 IGTMGLESIGKFC----RNLTELALLYCQRIGNL---ALLEVGRGCKSLQALHLVD 245 (448)
Q Consensus 197 ~~~~~~~~l~~~~----~~L~~L~l~~~~~~~~~---~~~~~~~~~~~L~~L~l~~ 245 (448)
+.+.++..+...+ +.++.+++..+. +.+. ........++.++.+.+..
T Consensus 245 l~d~g~~~L~~~l~~~~~~l~~l~l~~ns-i~~~~~~~L~~~l~~~~~l~~l~l~~ 299 (478)
T KOG4308|consen 245 LGDVGVEKLLPCLSVLSETLRVLDLSRNS-ITEKGVRDLAEVLVSCRQLEELSLSN 299 (478)
T ss_pred cchHHHHHHHHHhcccchhhhhhhhhcCC-ccccchHHHHHHHhhhHHHHHhhccc
Confidence 4444444443332 234566665532 2222 2233334455566666655
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.84 E-value=0.0018 Score=38.23 Aligned_cols=15 Identities=40% Similarity=0.479 Sum_probs=7.1
Q ss_pred cCCCCceeecccccc
Q 013172 80 HCKSLETLSLDSEFI 94 (448)
Q Consensus 80 ~~~~L~~L~l~~~~~ 94 (448)
++++|++|++++|.+
T Consensus 22 ~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 22 NLPNLETLNLSNNPI 36 (44)
T ss_dssp TCTTSSEEEETSSCC
T ss_pred CCCCCCEEEecCCCC
Confidence 444444444444444
No 58
>PLN03150 hypothetical protein; Provisional
Probab=96.71 E-value=0.0026 Score=62.57 Aligned_cols=109 Identities=17% Similarity=0.181 Sum_probs=72.8
Q ss_pred CccEEEeccCCccChhhHHHHHhcCCCCceeeccccccchhhHHHHhhcCCcccEEEeeccCCCcHHHHHHHhhcccccc
Q 013172 57 SLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLEL 136 (448)
Q Consensus 57 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 136 (448)
.++.|+++++. +.......+ ..+++|+.|+|++|.+....... +..+++|+.|++++|.+....+..+.. +++|+.
T Consensus 419 ~v~~L~L~~n~-L~g~ip~~i-~~L~~L~~L~Ls~N~l~g~iP~~-~~~l~~L~~LdLs~N~lsg~iP~~l~~-L~~L~~ 494 (623)
T PLN03150 419 FIDGLGLDNQG-LRGFIPNDI-SKLRHLQSINLSGNSIRGNIPPS-LGSITSLEVLDLSYNSFNGSIPESLGQ-LTSLRI 494 (623)
T ss_pred EEEEEECCCCC-ccccCCHHH-hCCCCCCEEECCCCcccCcCChH-HhCCCCCCEEECCCCCCCCCCchHHhc-CCCCCE
Confidence 37888888874 443333333 56899999999998876433333 346889999999988887665655654 889999
Q ss_pred ccccccccCChhHHHHHhhcCCCCCEEeecCCcc
Q 013172 137 LALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYF 170 (448)
Q Consensus 137 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 170 (448)
|+++++. +.......+.....++..+++.++..
T Consensus 495 L~Ls~N~-l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 495 LNLNGNS-LSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred EECcCCc-ccccCChHHhhccccCceEEecCCcc
Confidence 9998743 43332233332335667888887753
No 59
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=96.60 E-value=0.0033 Score=32.22 Aligned_cols=24 Identities=25% Similarity=0.537 Sum_probs=21.6
Q ss_pred CccCceEeccCCCCCCHHHHHHHH
Q 013172 390 CRMLESCHMVYCPGITAAGVATVV 413 (448)
Q Consensus 390 ~~~L~~L~l~~c~~~~~~~~~~~~ 413 (448)
||+|+.|++++|+.+++.++..+.
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 689999999999999999988764
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.58 E-value=0.0055 Score=55.56 Aligned_cols=136 Identities=24% Similarity=0.299 Sum_probs=69.0
Q ss_pred cCCCCCEEeecCCccCChhhHHHHHhcCC-CCcEEEecCCCCCChhhHHHHhhcCCCcceEecccccccCchhHHHHhcc
Q 013172 156 GCKKLKNLTLSDCYFLSDMGLEAIATGCK-ELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRG 234 (448)
Q Consensus 156 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 234 (448)
.+++++.|++++|. +...+ .+| +|++|.+.+|..+.... ..+ .++|+.|++.+|..+.. +
T Consensus 50 ~~~~l~~L~Is~c~-L~sLP------~LP~sLtsL~Lsnc~nLtsLP-~~L---P~nLe~L~Ls~Cs~L~s-----L--- 110 (426)
T PRK15386 50 EARASGRLYIKDCD-IESLP------VLPNELTEITIENCNNLTTLP-GSI---PEGLEKLTVCHCPEISG-----L--- 110 (426)
T ss_pred HhcCCCEEEeCCCC-CcccC------CCCCCCcEEEccCCCCcccCC-chh---hhhhhheEccCcccccc-----c---
Confidence 46788888888873 44322 233 68888888776653321 112 25788888877654431 1
Q ss_pred CcCCceEeccCCcCcChHHHHHHHHhCCCCcEEEccccccccCchHhHhhhcCCCCcEEeccccCCcCchHHHhhccCCC
Q 013172 235 CKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCS 314 (448)
Q Consensus 235 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 314 (448)
-++|+.|++... .... +. .-.++|+.|.+.+............ -.++|++|.+++|..+.. ...+ ..+
T Consensus 111 P~sLe~L~L~~n-~~~~--L~---~LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~L--P~~L--P~S 178 (426)
T PRK15386 111 PESVRSLEIKGS-ATDS--IK---NVPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNIIL--PEKL--PES 178 (426)
T ss_pred ccccceEEeCCC-CCcc--cc---cCcchHhheeccccccccccccccc--cCCcccEEEecCCCcccC--cccc--ccc
Confidence 245777776542 2111 11 1124577777643221111111110 124788888877653310 0111 125
Q ss_pred ccEEeeeC
Q 013172 315 LQHLNVSG 322 (448)
Q Consensus 315 L~~L~l~~ 322 (448)
|++|.+..
T Consensus 179 Lk~L~ls~ 186 (426)
T PRK15386 179 LQSITLHI 186 (426)
T ss_pred CcEEEecc
Confidence 77777765
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.58 E-value=0.0064 Score=55.14 Aligned_cols=11 Identities=36% Similarity=0.890 Sum_probs=5.8
Q ss_pred CCcEEEecCCC
Q 013172 185 ELTHLEINGCH 195 (448)
Q Consensus 185 ~L~~L~l~~~~ 195 (448)
+|+.|.+.+|.
T Consensus 157 SLk~L~Is~c~ 167 (426)
T PRK15386 157 SLKTLSLTGCS 167 (426)
T ss_pred cccEEEecCCC
Confidence 45555555544
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.43 E-value=0.00045 Score=57.28 Aligned_cols=37 Identities=24% Similarity=0.310 Sum_probs=15.2
Q ss_pred CCccEEeeeCccccChHHHHHHHhhCCCCCEEeccCc
Q 013172 313 CSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVL 349 (448)
Q Consensus 313 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 349 (448)
++|+.|.++....-...++..+...+|+|++|+++++
T Consensus 65 p~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N 101 (260)
T KOG2739|consen 65 PKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN 101 (260)
T ss_pred chhhhhcccCCcccccccceehhhhCCceeEEeecCC
Confidence 3455555544211111223333334455555555554
No 63
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.37 E-value=0.006 Score=35.99 Aligned_cols=38 Identities=29% Similarity=0.357 Sum_probs=27.6
Q ss_pred CCCceeeccccccchhhHHHHhhcCCcccEEEeeccCCCc
Q 013172 82 KSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTD 121 (448)
Q Consensus 82 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 121 (448)
++|++|++++|.++.. ...+..+++|+.|++++|.+++
T Consensus 1 ~~L~~L~l~~N~i~~l--~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQITDL--PPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-SSH--GGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCccc--CchHhCCCCCCEEEecCCCCCC
Confidence 5788999998888753 3334578999999998888765
No 64
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.09 E-value=0.0018 Score=51.60 Aligned_cols=80 Identities=20% Similarity=0.210 Sum_probs=41.7
Q ss_pred CCccEEEeccCCccChhhHHHHHhcCCCCceeeccccccchhhHHHHhhcCCcccEEEeeccCCCcH-HHHHHHhhcccc
Q 013172 56 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDE-ALVAVGNQCLSL 134 (448)
Q Consensus 56 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~L 134 (448)
.....+||+++.-..... ..+++.|.+|.+.+|.|+..+. .+...+|+|+.|.+.+|.+... .+..++. ||+|
T Consensus 42 d~~d~iDLtdNdl~~l~~----lp~l~rL~tLll~nNrIt~I~p-~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~-~p~L 115 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDN----LPHLPRLHTLLLNNNRITRIDP-DLDTFLPNLKTLILTNNSIQELGDLDPLAS-CPKL 115 (233)
T ss_pred cccceecccccchhhccc----CCCccccceEEecCCcceeecc-chhhhccccceEEecCcchhhhhhcchhcc-CCcc
Confidence 456666776654221111 1345677777777776654331 1222356677777766665432 1222332 5666
Q ss_pred ccccccc
Q 013172 135 ELLALYS 141 (448)
Q Consensus 135 ~~L~l~~ 141 (448)
++|.+-+
T Consensus 116 ~~Ltll~ 122 (233)
T KOG1644|consen 116 EYLTLLG 122 (233)
T ss_pred ceeeecC
Confidence 6666654
No 65
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.05 E-value=0.0057 Score=48.86 Aligned_cols=107 Identities=23% Similarity=0.269 Sum_probs=63.8
Q ss_pred cCCcceeeeccccccChhHHHHHHhhhCCCccEEEeccCCccChhhHHHHHhcCCCCceeeccccccchhh-HHHHhhcC
Q 013172 28 CNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKG-VHAVAQGC 106 (448)
Q Consensus 28 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~ 106 (448)
..+...+||+.+. +... ..++.. +.|+.|.+.++. ++..... +...+|+|+.|.+.+|.+...+ +..++ .|
T Consensus 41 ~d~~d~iDLtdNd-l~~l---~~lp~l-~rL~tLll~nNr-It~I~p~-L~~~~p~l~~L~LtnNsi~~l~dl~pLa-~~ 112 (233)
T KOG1644|consen 41 LDQFDAIDLTDND-LRKL---DNLPHL-PRLHTLLLNNNR-ITRIDPD-LDTFLPNLKTLILTNNSIQELGDLDPLA-SC 112 (233)
T ss_pred ccccceecccccc-hhhc---ccCCCc-cccceEEecCCc-ceeeccc-hhhhccccceEEecCcchhhhhhcchhc-cC
Confidence 3456667777662 2211 112233 678888888864 5544322 2234688888888888876544 33333 48
Q ss_pred CcccEEEeeccCCCcHHH--HHHHhhcccccccccccc
Q 013172 107 PLLRVLKLQCINVTDEAL--VAVGNQCLSLELLALYSF 142 (448)
Q Consensus 107 ~~L~~L~l~~~~~~~~~~--~~~~~~~~~L~~L~l~~~ 142 (448)
|+|++|.+-+|.+....- .++...+|+|+.|++.+.
T Consensus 113 p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 113 PKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred CccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 888888887777654322 122233688888888653
No 66
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.64 E-value=0.0035 Score=58.84 Aligned_cols=209 Identities=24% Similarity=0.262 Sum_probs=115.8
Q ss_pred cceeeeccccccChhHHHHHHhhhC--CCccEEEeccCCccChhhHHHHHhcCC----CCceeeccccccchhhHHHHhh
Q 013172 31 LEDLNLRFCEGLTDTGLVDLAHGCG--KSLKSLGIAACVKITDVSLEAVGSHCK----SLETLSLDSEFIHNKGVHAVAQ 104 (448)
Q Consensus 31 L~~L~l~~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~~----~L~~L~l~~~~~~~~~~~~~~~ 104 (448)
+..|.|.++ .+.+.+...+...+. .+|+.|+++++. +.+.+...+...++ .++.|.+..|.++..+...+..
T Consensus 89 l~~L~L~~~-~l~~~~~~~l~~~l~t~~~L~~L~l~~n~-l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~ 166 (478)
T KOG4308|consen 89 LLHLSLANN-RLGDRGAEELAQALKTLPTLGQLDLSGNN-LGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAA 166 (478)
T ss_pred HHHhhhhhC-ccccchHHHHHHHhcccccHhHhhcccCC-CccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHH
Confidence 666777777 455555555544432 467778888865 55666666654443 3566677667666655433332
Q ss_pred ---cCCcccEEEeeccCCCcHHHHHHHh-------hccccccccccccccCChhH---HHHHhhcCCC-CCEEeecCCcc
Q 013172 105 ---GCPLLRVLKLQCINVTDEALVAVGN-------QCLSLELLALYSFQQFTDKG---LHAVGKGCKK-LKNLTLSDCYF 170 (448)
Q Consensus 105 ---~~~~L~~L~l~~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~~-L~~L~l~~~~~ 170 (448)
..+.++.++++.|.+.+.....+.. ...++++|+++++. ++... +.......++ +..+++..+.
T Consensus 167 ~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~-~t~~~c~~l~~~l~~~~~~~~el~l~~n~- 244 (478)
T KOG4308|consen 167 VLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCG-VTSSSCALLDEVLASGESLLRELDLASNK- 244 (478)
T ss_pred HHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcC-cChHHHHHHHHHHhccchhhHHHHHHhcC-
Confidence 2456777777766664433222221 24567888887754 33332 2222333344 5567777765
Q ss_pred CChhhHHHHHhcC----CCCcEEEecCCCCCChhh---HHHHhhcCCCcceEecccccccCchhHHHHhc---cCcCCce
Q 013172 171 LSDMGLEAIATGC----KELTHLEINGCHNIGTMG---LESIGKFCRNLTELALLYCQRIGNLALLEVGR---GCKSLQA 240 (448)
Q Consensus 171 ~~~~~~~~~~~~~----~~L~~L~l~~~~~~~~~~---~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~L~~ 240 (448)
+.+.++......+ +.++.+++..+. +.+.+ +......++.++.+.+.+ +.+.+........ ....+.+
T Consensus 245 l~d~g~~~L~~~l~~~~~~l~~l~l~~ns-i~~~~~~~L~~~l~~~~~l~~l~l~~-n~l~~~~~~~~~~~l~~~~~~~~ 322 (478)
T KOG4308|consen 245 LGDVGVEKLLPCLSVLSETLRVLDLSRNS-ITEKGVRDLAEVLVSCRQLEELSLSN-NPLTDYGVELLLEALERKTPLLH 322 (478)
T ss_pred cchHHHHHHHHHhcccchhhhhhhhhcCC-ccccchHHHHHHHhhhHHHHHhhccc-CccccHHHHHHHHHhhhcccchh
Confidence 5555555554443 355788887754 44333 333444567888888877 4455444333322 2344555
Q ss_pred EeccC
Q 013172 241 LHLVD 245 (448)
Q Consensus 241 L~l~~ 245 (448)
+.+.+
T Consensus 323 ~~l~~ 327 (478)
T KOG4308|consen 323 LVLGG 327 (478)
T ss_pred hhccc
Confidence 55554
No 67
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=95.57 E-value=0.0019 Score=48.03 Aligned_cols=105 Identities=18% Similarity=0.233 Sum_probs=68.3
Q ss_pred CCcceeeeccccccC-hhHHHHHHhhhCCCccEEEeccCCccChhhHHHHHhcCCCCceeeccccccchhhHHHHhhcCC
Q 013172 29 NQLEDLNLRFCEGLT-DTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCP 107 (448)
Q Consensus 29 ~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 107 (448)
..+..++|+.|+-.. ...+..+.+. ..|+..+++++. +. ..+..+...+|.++.+++.+|.+.+.... + ..+|
T Consensus 27 kE~h~ldLssc~lm~i~davy~l~~~--~el~~i~ls~N~-fk-~fp~kft~kf~t~t~lNl~~neisdvPeE-~-Aam~ 100 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYMLSKG--YELTKISLSDNG-FK-KFPKKFTIKFPTATTLNLANNEISDVPEE-L-AAMP 100 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHHhCC--ceEEEEecccch-hh-hCCHHHhhccchhhhhhcchhhhhhchHH-H-hhhH
Confidence 456678888884221 2223344433 478888999874 32 34456667788999999999988765544 3 3589
Q ss_pred cccEEEeeccCCCcHHHHHHHhhccccccccccc
Q 013172 108 LLRVLKLQCINVTDEALVAVGNQCLSLELLALYS 141 (448)
Q Consensus 108 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 141 (448)
.|+.|+++.|.+..+. ..++. +.++-.|+..+
T Consensus 101 aLr~lNl~~N~l~~~p-~vi~~-L~~l~~Lds~~ 132 (177)
T KOG4579|consen 101 ALRSLNLRFNPLNAEP-RVIAP-LIKLDMLDSPE 132 (177)
T ss_pred HhhhcccccCccccch-HHHHH-HHhHHHhcCCC
Confidence 9999999988886433 23333 55666666554
No 68
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=94.90 E-value=0.028 Score=52.33 Aligned_cols=171 Identities=22% Similarity=0.192 Sum_probs=96.4
Q ss_pred CCccEEEeccCCccChhhHHHHHhcC-CCCceeeccccccchhhHHHHhhcCCcccEEEeeccCCCcHHHHHHHhhcccc
Q 013172 56 KSLKSLGIAACVKITDVSLEAVGSHC-KSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSL 134 (448)
Q Consensus 56 ~~L~~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 134 (448)
+.++.|++.++. +++.... .... ++|+.|+++++.+.... .-...+++|+.|+++.+.+.+...... ..++|
T Consensus 116 ~~l~~L~l~~n~-i~~i~~~--~~~~~~nL~~L~l~~N~i~~l~--~~~~~l~~L~~L~l~~N~l~~l~~~~~--~~~~L 188 (394)
T COG4886 116 TNLTSLDLDNNN-ITDIPPL--IGLLKSNLKELDLSDNKIESLP--SPLRNLPNLKNLDLSFNDLSDLPKLLS--NLSNL 188 (394)
T ss_pred cceeEEecCCcc-cccCccc--cccchhhcccccccccchhhhh--hhhhccccccccccCCchhhhhhhhhh--hhhhh
Confidence 468888888764 4433222 1223 37888888888775431 223457888888888887765433221 36788
Q ss_pred ccccccccccCChhHHHHHhhcCCCCCEEeecCCccCChhhHHHHHhcCCCCcEEEecCCCCCChhhHHHHhhcCCCcce
Q 013172 135 ELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTE 214 (448)
Q Consensus 135 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 214 (448)
+.|++++.. +.+ ++........|+++.++++..... ......+.++..+.+.+.. +.. .......++.++.
T Consensus 189 ~~L~ls~N~-i~~--l~~~~~~~~~L~~l~~~~N~~~~~---~~~~~~~~~l~~l~l~~n~-~~~--~~~~~~~l~~l~~ 259 (394)
T COG4886 189 NNLDLSGNK-ISD--LPPEIELLSALEELDLSNNSIIEL---LSSLSNLKNLSGLELSNNK-LED--LPESIGNLSNLET 259 (394)
T ss_pred hheeccCCc-ccc--CchhhhhhhhhhhhhhcCCcceec---chhhhhcccccccccCCce-eee--ccchhccccccce
Confidence 888887643 221 222212234588888887742221 1112234556666544422 111 1223333477888
Q ss_pred EecccccccCchhHHHHhccCcCCceEeccCC
Q 013172 215 LALLYCQRIGNLALLEVGRGCKSLQALHLVDC 246 (448)
Q Consensus 215 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 246 (448)
|++++ ..+.+... .....+++.|++++.
T Consensus 260 L~~s~-n~i~~i~~---~~~~~~l~~L~~s~n 287 (394)
T COG4886 260 LDLSN-NQISSISS---LGSLTNLRELDLSGN 287 (394)
T ss_pred ecccc-cccccccc---ccccCccCEEeccCc
Confidence 88887 33433322 455778888888874
No 69
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=94.53 E-value=0.023 Score=42.51 Aligned_cols=108 Identities=17% Similarity=0.107 Sum_probs=66.0
Q ss_pred CCccEEEeccCCccChhhHHHHHhcCCCCceeeccccccchhhHHHHhhcCCcccEEEeeccCCCcHHHHHHHhhccccc
Q 013172 56 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLE 135 (448)
Q Consensus 56 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 135 (448)
..+..+++++|.-..-............|+.++|++|.+..- ...+...+|.++.|++..|.+.+...+ ++. +|.|+
T Consensus 27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~f-p~kft~kf~t~t~lNl~~neisdvPeE-~Aa-m~aLr 103 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKF-PKKFTIKFPTATTLNLANNEISDVPEE-LAA-MPALR 103 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhC-CHHHhhccchhhhhhcchhhhhhchHH-Hhh-hHHhh
Confidence 457778888885322222222233456788888988877543 234455577889999988888765544 444 78999
Q ss_pred cccccccccCChhHHHHHhhcCCCCCEEeecCCc
Q 013172 136 LLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCY 169 (448)
Q Consensus 136 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 169 (448)
.|+++... +. .....+. .+.++-.|+..++.
T Consensus 104 ~lNl~~N~-l~-~~p~vi~-~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 104 SLNLRFNP-LN-AEPRVIA-PLIKLDMLDSPENA 134 (177)
T ss_pred hcccccCc-cc-cchHHHH-HHHhHHHhcCCCCc
Confidence 99987633 32 1122222 24566666666654
No 70
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=94.39 E-value=0.039 Score=27.49 Aligned_cols=21 Identities=38% Similarity=0.578 Sum_probs=9.6
Q ss_pred CCCceeeccccccchhhHHHH
Q 013172 82 KSLETLSLDSEFIHNKGVHAV 102 (448)
Q Consensus 82 ~~L~~L~l~~~~~~~~~~~~~ 102 (448)
++|++|++++|.++..++..+
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHh
Confidence 455555555555555544443
No 71
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=94.35 E-value=0.025 Score=52.69 Aligned_cols=173 Identities=22% Similarity=0.209 Sum_probs=106.2
Q ss_pred CCCCceeeccccccchhhHHHHhhcC-CcccEEEeeccCCCcHHHHHHHhhccccccccccccccCChhHHHHHhhcCCC
Q 013172 81 CKSLETLSLDSEFIHNKGVHAVAQGC-PLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKK 159 (448)
Q Consensus 81 ~~~L~~L~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 159 (448)
.+.++.+++.++.+..... ..... ++|+.|+++.+.+.... ..+ ..+++|+.|+++.++ +. .++......+.
T Consensus 115 ~~~l~~L~l~~n~i~~i~~--~~~~~~~nL~~L~l~~N~i~~l~-~~~-~~l~~L~~L~l~~N~-l~--~l~~~~~~~~~ 187 (394)
T COG4886 115 LTNLTSLDLDNNNITDIPP--LIGLLKSNLKELDLSDNKIESLP-SPL-RNLPNLKNLDLSFND-LS--DLPKLLSNLSN 187 (394)
T ss_pred ccceeEEecCCcccccCcc--ccccchhhcccccccccchhhhh-hhh-hccccccccccCCch-hh--hhhhhhhhhhh
Confidence 4789999999888765432 22224 38999999998886542 122 348999999998754 32 23333225689
Q ss_pred CCEEeecCCccCChhhHHHHHhcCCCCcEEEecCCCCCChhhHHHHhhcCCCcceEecccccccCchhHHHHhccCcCCc
Q 013172 160 LKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQ 239 (448)
Q Consensus 160 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 239 (448)
|+.|+++++. +.+ +.........|+++.+.+...+.. ...+. ...++..+.+.+ ..+.. +......+++++
T Consensus 188 L~~L~ls~N~-i~~--l~~~~~~~~~L~~l~~~~N~~~~~--~~~~~-~~~~l~~l~l~~-n~~~~--~~~~~~~l~~l~ 258 (394)
T COG4886 188 LNNLDLSGNK-ISD--LPPEIELLSALEELDLSNNSIIEL--LSSLS-NLKNLSGLELSN-NKLED--LPESIGNLSNLE 258 (394)
T ss_pred hhheeccCCc-ccc--CchhhhhhhhhhhhhhcCCcceec--chhhh-hcccccccccCC-ceeee--ccchhccccccc
Confidence 9999999986 333 222112344699999987432222 11122 235666666544 22221 134456678899
Q ss_pred eEeccCCcCcChHHHHHHHHhCCCCcEEEccccc
Q 013172 240 ALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCY 273 (448)
Q Consensus 240 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 273 (448)
.|+++++ .+.+... .....+++.|++++..
T Consensus 259 ~L~~s~n-~i~~i~~---~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 259 TLDLSNN-QISSISS---LGSLTNLRELDLSGNS 288 (394)
T ss_pred eeccccc-ccccccc---ccccCccCEEeccCcc
Confidence 9999985 3333222 3447899999998853
No 72
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=92.83 E-value=0.099 Score=25.97 Aligned_cols=20 Identities=45% Similarity=0.532 Sum_probs=7.7
Q ss_pred CCCcEEeccCCCCCChHHHHH
Q 013172 365 PLLKDVVLSHCRQITDVGLSH 385 (448)
Q Consensus 365 ~~L~~L~l~~c~~l~~~~~~~ 385 (448)
++|++|++++|. +++.++..
T Consensus 2 ~~L~~L~l~~n~-i~~~g~~~ 21 (24)
T PF13516_consen 2 PNLETLDLSNNQ-ITDEGASA 21 (24)
T ss_dssp TT-SEEE-TSSB-EHHHHHHH
T ss_pred CCCCEEEccCCc-CCHHHHHH
Confidence 344444444432 44444433
No 73
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=89.69 E-value=0.37 Score=25.04 Aligned_cols=16 Identities=25% Similarity=0.486 Sum_probs=6.4
Q ss_pred CceeeccccccchhhH
Q 013172 84 LETLSLDSEFIHNKGV 99 (448)
Q Consensus 84 L~~L~l~~~~~~~~~~ 99 (448)
|++|+|++|.+...+.
T Consensus 4 L~~LdL~~N~i~~~G~ 19 (28)
T smart00368 4 LRELDLSNNKLGDEGA 19 (28)
T ss_pred cCEEECCCCCCCHHHH
Confidence 3444444444433333
No 74
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=88.43 E-value=0.58 Score=43.87 Aligned_cols=81 Identities=19% Similarity=0.122 Sum_probs=54.0
Q ss_pred CCccEEEeccCCccChhhHHHHHhcCCCCceeecccc--ccch-hhHHHHhhcCCcccEEEeeccCCCc------HHHHH
Q 013172 56 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSE--FIHN-KGVHAVAQGCPLLRVLKLQCINVTD------EALVA 126 (448)
Q Consensus 56 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~------~~~~~ 126 (448)
+.+..+.+++|.-..-+.+..+.+..|+|+.|+|++| ++.. ..+..+ ....|++|.+.+|.+.. +-+.+
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~--k~l~Leel~l~GNPlc~tf~~~s~yv~~ 295 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKL--KGLPLEELVLEGNPLCTTFSDRSEYVSA 295 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhh--cCCCHHHeeecCCccccchhhhHHHHHH
Confidence 6788888888765555667777788888999999887 3322 112222 13568888888877643 33445
Q ss_pred HHhhcccccccc
Q 013172 127 VGNQCLSLELLA 138 (448)
Q Consensus 127 ~~~~~~~L~~L~ 138 (448)
+.+.+|+|..|+
T Consensus 296 i~~~FPKL~~LD 307 (585)
T KOG3763|consen 296 IRELFPKLLRLD 307 (585)
T ss_pred HHHhcchheeec
Confidence 556678888776
No 75
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=88.16 E-value=0.18 Score=47.25 Aligned_cols=104 Identities=22% Similarity=0.223 Sum_probs=68.6
Q ss_pred ccCCcceeeeccccccChhHHHHHHhhhCCCccEEEeccCCccChh-hHHHHHhcCCCCceeeccccccchhhHHHHhhc
Q 013172 27 VCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDV-SLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQG 105 (448)
Q Consensus 27 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 105 (448)
.+++|+.|++..+ .+.. +......+ ++|++|+++++. ++.. ++. .++.|+.|++.+|.+....- + ..
T Consensus 93 ~~~~l~~l~l~~n-~i~~--i~~~l~~~-~~L~~L~ls~N~-I~~i~~l~----~l~~L~~L~l~~N~i~~~~~--~-~~ 160 (414)
T KOG0531|consen 93 KLKSLEALDLYDN-KIEK--IENLLSSL-VNLQVLDLSFNK-ITKLEGLS----TLTLLKELNLSGNLISDISG--L-ES 160 (414)
T ss_pred cccceeeeecccc-chhh--cccchhhh-hcchheeccccc-cccccchh----hccchhhheeccCcchhccC--C-cc
Confidence 3478899999877 3332 22212223 789999999975 5443 333 35669999999998865332 1 12
Q ss_pred CCcccEEEeeccCCCcHHHHHHHhhccccccccccccc
Q 013172 106 CPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQ 143 (448)
Q Consensus 106 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 143 (448)
++.|+.++++++.+....... ...+.+++.+.+.+..
T Consensus 161 l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 161 LKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNS 197 (414)
T ss_pred chhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCc
Confidence 678999999888876544421 3457889999888744
No 76
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=87.77 E-value=1.1 Score=42.20 Aligned_cols=85 Identities=25% Similarity=0.181 Sum_probs=38.1
Q ss_pred hCCCCCEEeccCcCCCCHHHHHHHhcCCCCCcEEeccCCC-CCChHHHHHHHH-cCccCceEeccCCCCCCH-----HHH
Q 013172 337 GCPELNYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSHCR-QITDVGLSHLVK-NCRMLESCHMVYCPGITA-----AGV 409 (448)
Q Consensus 337 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~-~l~~~~~~~~~~-~~~~L~~L~l~~c~~~~~-----~~~ 409 (448)
..|.+..+.+++|.-..-+.+..+....|+|+.|+|++.. .+.. ..++.+ ....|+.|.+.|++-.+. ..+
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv 293 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLCTTFSDRSEYV 293 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCccccchhhhHHHH
Confidence 4555555555555433334444455555666666655521 1111 111111 234455566666554332 222
Q ss_pred HHHHhcCccceEEE
Q 013172 410 ATVVSGCANIKKVM 423 (448)
Q Consensus 410 ~~~~~~~~~L~~L~ 423 (448)
..+.+.+|+|..|+
T Consensus 294 ~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 294 SAIRELFPKLLRLD 307 (585)
T ss_pred HHHHHhcchheeec
Confidence 23344556666543
No 77
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=87.73 E-value=0.7 Score=23.98 Aligned_cols=24 Identities=33% Similarity=0.403 Sum_probs=18.6
Q ss_pred CcccEEEeeccCCCcHHHHHHHhh
Q 013172 107 PLLRVLKLQCINVTDEALVAVGNQ 130 (448)
Q Consensus 107 ~~L~~L~l~~~~~~~~~~~~~~~~ 130 (448)
++|++|++++|.+.++....+.+.
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~~ 25 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAEA 25 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHHH
Confidence 478888888888888877776553
No 78
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=85.93 E-value=0.4 Score=44.93 Aligned_cols=131 Identities=23% Similarity=0.179 Sum_probs=81.5
Q ss_pred ccCCcceeeeccccccChhHHHHHHhhhCCCccEEEeccCCccChhhHHHHHhcCCCCceeeccccccchhhHHHHhhcC
Q 013172 27 VCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGC 106 (448)
Q Consensus 27 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 106 (448)
.+..++.+.+... .+.. ...-...+ .+++.|++.++. +.. +......+++|++|++++|.|+...... .+
T Consensus 70 ~l~~l~~l~l~~n-~i~~--~~~~l~~~-~~l~~l~l~~n~-i~~--i~~~l~~~~~L~~L~ls~N~I~~i~~l~---~l 139 (414)
T KOG0531|consen 70 SLTSLKELNLRQN-LIAK--ILNHLSKL-KSLEALDLYDNK-IEK--IENLLSSLVNLQVLDLSFNKITKLEGLS---TL 139 (414)
T ss_pred HhHhHHhhccchh-hhhh--hhcccccc-cceeeeeccccc-hhh--cccchhhhhcchheeccccccccccchh---hc
Confidence 3466667776554 2222 11112222 789999999875 332 2221356899999999999987643222 35
Q ss_pred CcccEEEeeccCCCcHHHHHHHhhccccccccccccccCChhHHHHHhhcCCCCCEEeecCCccCC
Q 013172 107 PLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLS 172 (448)
Q Consensus 107 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 172 (448)
+.|+.|++.+|.+..... +. .+++|+.++++++. +....... ...+.+++.+.+.++....
T Consensus 140 ~~L~~L~l~~N~i~~~~~--~~-~l~~L~~l~l~~n~-i~~ie~~~-~~~~~~l~~l~l~~n~i~~ 200 (414)
T KOG0531|consen 140 TLLKELNLSGNLISDISG--LE-SLKSLKLLDLSYNR-IVDIENDE-LSELISLEELDLGGNSIRE 200 (414)
T ss_pred cchhhheeccCcchhccC--Cc-cchhhhcccCCcch-hhhhhhhh-hhhccchHHHhccCCchhc
Confidence 669999999998865322 21 16888888888743 32221101 3467899999999887433
No 79
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=85.09 E-value=0.44 Score=21.36 Aligned_cols=12 Identities=8% Similarity=0.332 Sum_probs=4.9
Q ss_pred cceEEEEeeeee
Q 013172 418 NIKKVMVEKWKV 429 (448)
Q Consensus 418 ~L~~L~l~~~~~ 429 (448)
+|+.|++++|++
T Consensus 2 ~L~~L~l~~n~L 13 (17)
T PF13504_consen 2 NLRTLDLSNNRL 13 (17)
T ss_dssp T-SEEEETSS--
T ss_pred ccCEEECCCCCC
Confidence 455555555554
No 80
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=76.27 E-value=2.7 Score=21.34 Aligned_cols=25 Identities=36% Similarity=0.418 Sum_probs=11.3
Q ss_pred ccEEEeccCCccChhhHHHHHhcCC
Q 013172 58 LKSLGIAACVKITDVSLEAVGSHCK 82 (448)
Q Consensus 58 L~~L~l~~~~~~~~~~~~~~~~~~~ 82 (448)
|++|.+.......+..+..+++.||
T Consensus 2 LKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 2 LKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CeEEEeeEEEECChhHHHHhhccCc
Confidence 4555555544333334444444443
No 81
>PF03382 DUF285: Mycoplasma protein of unknown function, DUF285; InterPro: IPR005046 This is a family proteins of unknown function. Many contain a tandem peptide repeat sequence of 25 or 26 residues, found in predicted surface proteins (often lipoproteins) from Listeria monocytogenes, Listeria innocua, Enterococcus faecalis (Streptococcus faecalis), Lactobacillus plantarum, Mycoplasma mycoides, Helicobacter hepaticus, and other species.
Probab=71.90 E-value=2 Score=32.08 Aligned_cols=15 Identities=33% Similarity=0.463 Sum_probs=6.8
Q ss_pred HHHhcCCCCCcEEecc
Q 013172 358 VELGKGCPLLKDVVLS 373 (448)
Q Consensus 358 ~~~~~~~~~L~~L~l~ 373 (448)
..++..++.|.. +++
T Consensus 54 ~~mF~~~~~l~~-dls 68 (120)
T PF03382_consen 54 SGMFAGCSSLNQ-DLS 68 (120)
T ss_pred HHHHhhhhhcCC-Ccc
Confidence 333444555555 443
No 82
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=70.46 E-value=0.47 Score=44.73 Aligned_cols=34 Identities=15% Similarity=0.184 Sum_probs=14.3
Q ss_pred CceeeccccccchhhHHHHhhcCCcccEEEeeccCC
Q 013172 84 LETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINV 119 (448)
Q Consensus 84 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 119 (448)
|+.|-+++|.++... ..+. ..++|..|+.++|.+
T Consensus 145 Lkvli~sNNkl~~lp-~~ig-~~~tl~~ld~s~nei 178 (722)
T KOG0532|consen 145 LKVLIVSNNKLTSLP-EEIG-LLPTLAHLDVSKNEI 178 (722)
T ss_pred ceeEEEecCccccCC-cccc-cchhHHHhhhhhhhh
Confidence 555555555443211 1111 234555555554444
No 83
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=68.29 E-value=3 Score=20.05 Aligned_cols=13 Identities=8% Similarity=0.153 Sum_probs=10.0
Q ss_pred cceEEEEeeeeec
Q 013172 418 NIKKVMVEKWKVS 430 (448)
Q Consensus 418 ~L~~L~l~~~~~~ 430 (448)
+|++|++++|+++
T Consensus 1 ~L~~Ldls~n~l~ 13 (22)
T PF00560_consen 1 NLEYLDLSGNNLT 13 (22)
T ss_dssp TESEEEETSSEES
T ss_pred CccEEECCCCcCE
Confidence 4778888888776
No 84
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=66.69 E-value=3.7 Score=39.10 Aligned_cols=36 Identities=22% Similarity=0.182 Sum_probs=15.9
Q ss_pred CCceeeccccccchhhHHHHhhcCCcccEEEeeccCCC
Q 013172 83 SLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVT 120 (448)
Q Consensus 83 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 120 (448)
.|.+|++++|.+....+. +.+|++|++|-|.+|.+.
T Consensus 212 pLi~lDfScNkis~iPv~--fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 212 PLIRLDFSCNKISYLPVD--FRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred ceeeeecccCceeecchh--hhhhhhheeeeeccCCCC
Confidence 344555555544332221 223455555555555443
No 85
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=64.60 E-value=6 Score=19.79 Aligned_cols=14 Identities=21% Similarity=0.368 Sum_probs=7.0
Q ss_pred CCCceeeccccccc
Q 013172 82 KSLETLSLDSEFIH 95 (448)
Q Consensus 82 ~~L~~L~l~~~~~~ 95 (448)
++|++|++.+|.+.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34555555555443
No 86
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=64.60 E-value=6 Score=19.79 Aligned_cols=14 Identities=21% Similarity=0.368 Sum_probs=7.0
Q ss_pred CCCceeeccccccc
Q 013172 82 KSLETLSLDSEFIH 95 (448)
Q Consensus 82 ~~L~~L~l~~~~~~ 95 (448)
++|++|++.+|.+.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34555555555443
No 87
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=60.13 E-value=2.4 Score=31.88 Aligned_cols=12 Identities=25% Similarity=0.595 Sum_probs=4.9
Q ss_pred cCCCCcEEeccc
Q 013172 286 HCNSLTELSLRF 297 (448)
Q Consensus 286 ~~~~L~~L~l~~ 297 (448)
.+++|+.+.+..
T Consensus 33 ~~~~l~~i~~~~ 44 (129)
T PF13306_consen 33 NCTSLKSINFPN 44 (129)
T ss_dssp T-TT-SEEEESS
T ss_pred cccccccccccc
Confidence 344555555543
No 88
>PF03382 DUF285: Mycoplasma protein of unknown function, DUF285; InterPro: IPR005046 This is a family proteins of unknown function. Many contain a tandem peptide repeat sequence of 25 or 26 residues, found in predicted surface proteins (often lipoproteins) from Listeria monocytogenes, Listeria innocua, Enterococcus faecalis (Streptococcus faecalis), Lactobacillus plantarum, Mycoplasma mycoides, Helicobacter hepaticus, and other species.
Probab=56.34 E-value=5.2 Score=29.84 Aligned_cols=10 Identities=40% Similarity=0.820 Sum_probs=4.2
Q ss_pred HHhhCCCCCE
Q 013172 334 IAKGCPELNY 343 (448)
Q Consensus 334 ~~~~~~~L~~ 343 (448)
+...+++|..
T Consensus 56 mF~~~~~l~~ 65 (120)
T PF03382_consen 56 MFAGCSSLNQ 65 (120)
T ss_pred HHhhhhhcCC
Confidence 3334444444
No 89
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=45.15 E-value=11 Score=19.17 Aligned_cols=14 Identities=14% Similarity=0.351 Sum_probs=9.1
Q ss_pred ccceEEEEeeeeec
Q 013172 417 ANIKKVMVEKWKVS 430 (448)
Q Consensus 417 ~~L~~L~l~~~~~~ 430 (448)
.+|+.|++.+|+|.
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 46677777777663
No 90
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=38.89 E-value=33 Score=30.49 Aligned_cols=82 Identities=11% Similarity=0.098 Sum_probs=49.4
Q ss_pred HHhhhCCCccEEEeccCCccChhhHHHHHhcC---CCCceeeccccccch---hhHHHHhhcCCcccEEEeeccCCCcHH
Q 013172 50 LAHGCGKSLKSLGIAACVKITDVSLEAVGSHC---KSLETLSLDSEFIHN---KGVHAVAQGCPLLRVLKLQCINVTDEA 123 (448)
Q Consensus 50 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~ 123 (448)
..+..-+.+++.++.+...++...+..+...+ ...+..++-++..++ .++....+..+.|++|++..+.++...
T Consensus 192 ri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnvesnFItg~g 271 (353)
T KOG3735|consen 192 RIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVESNFITGLG 271 (353)
T ss_pred HHhcCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheeccccccccHH
Confidence 33444467888888777667766666555443 335555555544433 223334455677888888888887777
Q ss_pred HHHHHhhc
Q 013172 124 LVAVGNQC 131 (448)
Q Consensus 124 ~~~~~~~~ 131 (448)
+.++...+
T Consensus 272 i~a~~~al 279 (353)
T KOG3735|consen 272 IMALLRAL 279 (353)
T ss_pred HHHHHHHH
Confidence 76665543
No 91
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=34.09 E-value=1.2e+02 Score=27.26 Aligned_cols=82 Identities=20% Similarity=0.195 Sum_probs=36.7
Q ss_pred hHHHHHhcCCCCceeeccccc-cchhhHHHHhh---cCCcccEEEeeccCCCcHHHHH---HHhhccccccccccccccC
Q 013172 73 SLEAVGSHCKSLETLSLDSEF-IHNKGVHAVAQ---GCPLLRVLKLQCINVTDEALVA---VGNQCLSLELLALYSFQQF 145 (448)
Q Consensus 73 ~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~ 145 (448)
.+..+-..-|.++.+++.+.. +....+..+.. .-+..+.+.+-....++..... +.+.++.|++|++.+ +-+
T Consensus 189 ~leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnves-nFI 267 (353)
T KOG3735|consen 189 SLERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVES-NFI 267 (353)
T ss_pred HHHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheeccc-ccc
Confidence 344444444666666665533 22222222222 2234444444444444332222 223346666666665 335
Q ss_pred ChhHHHHHhh
Q 013172 146 TDKGLHAVGK 155 (448)
Q Consensus 146 ~~~~~~~~~~ 155 (448)
+..++-++..
T Consensus 268 tg~gi~a~~~ 277 (353)
T KOG3735|consen 268 TGLGIMALLR 277 (353)
T ss_pred ccHHHHHHHH
Confidence 5555554443
No 92
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=32.39 E-value=19 Score=18.34 Aligned_cols=16 Identities=13% Similarity=0.244 Sum_probs=10.6
Q ss_pred ccceEEEEeeeeeccc
Q 013172 417 ANIKKVMVEKWKVSER 432 (448)
Q Consensus 417 ~~L~~L~l~~~~~~~~ 432 (448)
++|+.|++++|++..-
T Consensus 2 ~~L~~L~vs~N~Lt~L 17 (26)
T smart00364 2 PSLKELNVSNNQLTSL 17 (26)
T ss_pred cccceeecCCCccccC
Confidence 4577777777776543
Done!