Query 013172
Match_columns 448
No_of_seqs 312 out of 2498
Neff 11.4
Searched_HMMs 29240
Date Mon Mar 25 05:32:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013172.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013172hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ogk_B Coronatine-insensitive 100.0 1.2E-36 4.2E-41 296.8 32.4 403 20-435 103-531 (592)
2 2p1m_B Transport inhibitor res 100.0 1.3E-35 4.5E-40 289.7 34.7 400 21-434 97-523 (594)
3 3ogk_B Coronatine-insensitive 100.0 5.7E-34 2E-38 277.9 29.6 408 3-427 114-548 (592)
4 2p1m_B Transport inhibitor res 100.0 6.1E-33 2.1E-37 270.9 32.9 408 3-428 107-542 (594)
5 1z7x_W Ribonuclease inhibitor; 100.0 4.6E-30 1.6E-34 242.6 33.8 404 3-422 5-460 (461)
6 1z7x_W Ribonuclease inhibitor; 100.0 6.8E-29 2.3E-33 234.6 35.4 389 29-431 3-441 (461)
7 3t6q_A CD180 antigen; protein- 99.9 1.9E-27 6.5E-32 232.4 0.8 128 3-141 35-162 (606)
8 3rgz_A Protein brassinosteroid 99.9 2.3E-26 7.9E-31 229.7 2.5 136 286-430 416-551 (768)
9 3t6q_A CD180 antigen; protein- 99.9 8.1E-27 2.8E-31 228.0 -0.8 400 3-430 59-560 (606)
10 3vq2_A TLR4, TOLL-like recepto 99.9 3.4E-26 1.2E-30 223.6 1.0 136 286-430 422-558 (606)
11 3rgz_A Protein brassinosteroid 99.9 2.1E-26 7.3E-31 230.0 -1.6 136 287-431 393-528 (768)
12 1o6v_A Internalin A; bacterial 99.9 1.8E-22 6E-27 190.3 24.4 346 28-432 45-390 (466)
13 3vq2_A TLR4, TOLL-like recepto 99.9 1.5E-25 5.2E-30 218.9 2.6 187 234-432 348-536 (606)
14 2z81_A CD282 antigen, TOLL-lik 99.9 3E-24 1E-28 207.3 10.7 178 3-194 28-206 (549)
15 4fmz_A Internalin; leucine ric 99.9 3E-22 1E-26 181.6 23.2 303 56-430 44-346 (347)
16 2z81_A CD282 antigen, TOLL-lik 99.9 1.2E-23 4.2E-28 203.0 14.2 394 3-430 52-510 (549)
17 2z7x_B TOLL-like receptor 1, v 99.9 2.2E-24 7.7E-29 206.6 8.6 120 5-141 4-124 (520)
18 1o6v_A Internalin A; bacterial 99.9 6.1E-22 2.1E-26 186.6 25.0 339 3-402 48-386 (466)
19 2z63_A TOLL-like receptor 4, v 99.9 2.3E-25 7.9E-30 216.2 0.6 207 209-431 324-532 (570)
20 4fmz_A Internalin; leucine ric 99.9 2.4E-21 8.4E-26 175.6 25.2 303 27-402 42-344 (347)
21 1ziw_A TOLL-like receptor 3; i 99.9 1.5E-24 5.2E-29 214.7 1.6 155 3-169 27-182 (680)
22 3v47_A TOLL-like receptor 5B a 99.9 2.1E-23 7.3E-28 196.5 6.0 356 29-402 30-406 (455)
23 2ast_B S-phase kinase-associat 99.9 7.7E-21 2.6E-25 171.5 21.8 156 183-341 141-298 (336)
24 2ast_B S-phase kinase-associat 99.9 5.3E-21 1.8E-25 172.6 20.4 254 56-322 47-302 (336)
25 1ziw_A TOLL-like receptor 3; i 99.9 2E-23 6.7E-28 206.8 4.8 358 56-430 222-622 (680)
26 2z7x_B TOLL-like receptor 1, v 99.9 5.5E-23 1.9E-27 197.0 7.3 124 3-142 23-148 (520)
27 3j0a_A TOLL-like receptor 5; m 99.9 1.2E-23 4.2E-28 212.3 2.3 320 3-349 26-391 (844)
28 2z63_A TOLL-like receptor 4, v 99.9 2.8E-23 9.6E-28 201.6 2.1 207 182-403 323-530 (570)
29 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 4.7E-23 1.6E-27 199.0 2.9 156 260-430 351-510 (562)
30 4eco_A Uncharacterized protein 99.9 7.2E-24 2.5E-28 206.9 -4.9 323 80-431 247-601 (636)
31 3v47_A TOLL-like receptor 5B a 99.8 1.5E-22 5.2E-27 190.7 3.4 360 56-432 30-410 (455)
32 4eco_A Uncharacterized protein 99.8 4.1E-23 1.4E-27 201.6 -4.9 331 78-431 202-580 (636)
33 4ecn_A Leucine-rich repeat pro 99.8 6.4E-22 2.2E-26 196.6 3.6 321 80-431 489-841 (876)
34 3j0a_A TOLL-like receptor 5; m 99.8 9.1E-23 3.1E-27 205.9 -2.9 400 3-431 50-518 (844)
35 3bz5_A Internalin-J, INLJ; leu 99.8 2E-20 6.7E-25 174.9 9.2 224 27-297 40-263 (457)
36 3bz5_A Internalin-J, INLJ; leu 99.8 3.1E-20 1.1E-24 173.5 10.6 296 56-402 42-350 (457)
37 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 1.3E-20 4.4E-25 182.0 6.6 368 3-406 54-512 (562)
38 3o6n_A APL1; leucine-rich repe 99.8 2.4E-20 8.2E-25 171.8 6.9 141 261-418 225-365 (390)
39 2ca6_A RAN GTPase-activating p 99.8 9E-18 3.1E-22 154.3 23.3 103 26-129 29-144 (386)
40 3o6n_A APL1; leucine-rich repe 99.8 6.2E-20 2.1E-24 169.0 6.8 324 28-394 44-367 (390)
41 2ca6_A RAN GTPase-activating p 99.8 2.4E-17 8.4E-22 151.4 23.6 210 209-426 93-339 (386)
42 4g8a_A TOLL-like receptor 4; l 99.8 6.3E-21 2.2E-25 187.6 -0.5 130 3-142 54-183 (635)
43 4ecn_A Leucine-rich repeat pro 99.8 2E-20 7E-25 185.9 2.8 320 56-403 491-839 (876)
44 3oja_B Anopheles plasmodium-re 99.8 1.8E-19 6.1E-24 175.0 5.8 105 286-402 252-356 (597)
45 2id5_A Lingo-1, leucine rich r 99.8 1.8E-19 6.3E-24 170.5 4.9 310 29-360 32-341 (477)
46 2id5_A Lingo-1, leucine rich r 99.8 2.3E-19 7.7E-24 169.9 3.8 300 56-376 32-331 (477)
47 3oja_B Anopheles plasmodium-re 99.8 7.5E-19 2.6E-23 170.6 7.1 319 28-389 50-368 (597)
48 4g8a_A TOLL-like receptor 4; l 99.7 4.4E-19 1.5E-23 174.5 0.5 133 29-169 52-184 (635)
49 3goz_A Leucine-rich repeat-con 99.7 3.5E-15 1.2E-19 135.5 19.4 140 26-169 19-178 (362)
50 1xku_A Decorin; proteoglycan, 99.7 6E-18 2.1E-22 152.0 1.0 148 30-193 32-180 (330)
51 3goz_A Leucine-rich repeat-con 99.6 1.1E-14 3.8E-19 132.2 19.7 260 112-381 3-299 (362)
52 1jl5_A Outer protein YOPM; leu 99.6 2.2E-16 7.4E-21 147.4 8.2 36 82-120 131-166 (454)
53 1jl5_A Outer protein YOPM; leu 99.6 6E-17 2.1E-21 151.2 4.0 354 4-431 14-410 (454)
54 1xku_A Decorin; proteoglycan, 99.6 4.8E-17 1.7E-21 146.1 2.8 65 363-428 261-330 (330)
55 2ft3_A Biglycan; proteoglycan, 99.6 1.7E-17 5.9E-22 149.1 -4.5 38 82-120 54-91 (332)
56 2ft3_A Biglycan; proteoglycan, 99.6 9.7E-17 3.3E-21 144.2 -0.4 291 30-350 34-331 (332)
57 2z80_A TOLL-like receptor 2, v 99.6 1.6E-15 5.4E-20 137.5 6.5 256 132-402 52-312 (353)
58 2z80_A TOLL-like receptor 2, v 99.6 8.6E-16 2.9E-20 139.2 3.6 258 56-353 52-315 (353)
59 3o53_A Protein LRIM1, AGAP0063 99.5 2.3E-15 8E-20 134.0 5.1 130 261-401 143-272 (317)
60 3o53_A Protein LRIM1, AGAP0063 99.5 9E-16 3.1E-20 136.7 2.1 60 56-120 34-93 (317)
61 2z66_A Variable lymphocyte rec 99.5 1.8E-16 6.2E-21 140.8 -4.2 233 29-277 28-263 (306)
62 3g06_A SSPH2 (leucine-rich rep 99.5 6.5E-14 2.2E-18 134.8 12.6 240 56-356 61-300 (622)
63 3g06_A SSPH2 (leucine-rich rep 99.5 2.4E-14 8.3E-19 137.8 7.8 265 56-386 40-304 (622)
64 3e4g_A ATP synthase subunit S, 99.5 4.2E-14 1.4E-18 111.0 7.3 104 314-420 62-170 (176)
65 1wwl_A Monocyte differentiatio 99.5 1.4E-15 4.7E-20 135.2 -2.0 111 184-298 149-263 (312)
66 2z66_A Variable lymphocyte rec 99.5 2.1E-15 7.2E-20 133.9 -1.1 228 56-323 28-258 (306)
67 3e4g_A ATP synthase subunit S, 99.5 1.6E-13 5.4E-18 107.7 9.4 106 288-395 61-171 (176)
68 4fcg_A Uncharacterized protein 99.5 1.6E-14 5.6E-19 129.0 3.6 230 56-322 81-310 (328)
69 4fcg_A Uncharacterized protein 99.5 1.1E-14 3.7E-19 130.1 1.9 180 156-349 125-311 (328)
70 3zyi_A Leucine-rich repeat-con 99.5 1.9E-14 6.7E-19 134.8 3.4 35 287-322 265-299 (452)
71 3zyj_A Leucine-rich repeat-con 99.5 1.9E-14 6.4E-19 134.5 3.3 62 56-120 64-125 (440)
72 1ogq_A PGIP-2, polygalacturona 99.4 1.2E-15 4.2E-20 135.5 -4.9 251 56-326 50-304 (313)
73 1ogq_A PGIP-2, polygalacturona 99.4 3.2E-15 1.1E-19 132.8 -2.2 252 82-352 50-304 (313)
74 3oja_A Leucine-rich immune mol 99.4 3.8E-14 1.3E-18 133.6 4.4 59 57-120 35-93 (487)
75 3oja_A Leucine-rich immune mol 99.4 9.2E-15 3.1E-19 137.8 0.0 243 23-296 28-270 (487)
76 1ozn_A Reticulon 4 receptor; N 99.4 8.9E-15 3.1E-19 128.3 -0.1 205 56-274 32-237 (285)
77 3zyj_A Leucine-rich repeat-con 99.4 2.7E-14 9.3E-19 133.4 2.3 228 29-274 64-291 (440)
78 4glp_A Monocyte differentiatio 99.4 5.1E-14 1.8E-18 125.0 3.9 227 57-298 65-304 (310)
79 1h6u_A Internalin H; cell adhe 99.4 2.9E-12 1E-16 113.3 15.1 129 287-434 106-234 (308)
80 3zyi_A Leucine-rich repeat-con 99.4 3.5E-14 1.2E-18 133.1 2.3 228 29-274 75-302 (452)
81 1ozn_A Reticulon 4 receptor; N 99.4 3.4E-14 1.2E-18 124.6 1.7 208 28-250 31-239 (285)
82 3un9_A NLR family member X1; l 99.4 2.9E-12 9.8E-17 115.9 14.0 197 29-232 47-260 (372)
83 3un9_A NLR family member X1; l 99.4 1.7E-12 5.8E-17 117.5 11.9 174 81-259 71-261 (372)
84 1wwl_A Monocyte differentiatio 99.4 4.1E-14 1.4E-18 125.7 1.1 208 209-432 94-311 (312)
85 1h6u_A Internalin H; cell adhe 99.4 4.9E-12 1.7E-16 111.9 13.0 188 56-273 41-228 (308)
86 4glp_A Monocyte differentiatio 99.3 4.7E-13 1.6E-17 118.8 2.7 229 82-323 64-304 (310)
87 4ezg_A Putative uncharacterize 99.3 6.6E-12 2.3E-16 103.3 7.0 153 261-431 43-195 (197)
88 1h6t_A Internalin B; cell adhe 99.2 7.6E-11 2.6E-15 103.3 12.4 130 286-434 88-217 (291)
89 2z62_A TOLL-like receptor 4, v 99.2 8.1E-13 2.8E-17 115.2 -1.0 85 30-120 29-113 (276)
90 4ezg_A Putative uncharacterize 99.2 3E-11 1E-15 99.3 8.5 147 56-219 44-190 (197)
91 2z62_A TOLL-like receptor 4, v 99.2 1.2E-12 3.9E-17 114.2 -0.4 131 56-193 28-158 (276)
92 3rfs_A Internalin B, repeat mo 99.1 1.3E-11 4.6E-16 107.1 3.4 127 183-322 40-166 (272)
93 2o6q_A Variable lymphocyte rec 99.1 4.6E-12 1.6E-16 109.9 0.4 201 29-247 16-216 (270)
94 2xwt_C Thyrotropin receptor; s 99.1 3.3E-12 1.1E-16 108.7 -1.6 201 29-247 31-237 (239)
95 2ra8_A Uncharacterized protein 99.1 3.6E-10 1.2E-14 101.2 11.2 162 256-428 166-341 (362)
96 2o6q_A Variable lymphocyte rec 99.1 8.9E-12 3E-16 108.1 0.6 197 5-221 20-216 (270)
97 2xwt_C Thyrotropin receptor; s 99.1 4.7E-12 1.6E-16 107.8 -1.3 34 159-194 32-65 (239)
98 1m9s_A Internalin B; cell inva 99.1 2.1E-10 7.1E-15 110.4 9.9 121 210-349 43-163 (605)
99 1h6t_A Internalin B; cell adhe 99.1 6.8E-10 2.3E-14 97.2 12.0 59 56-121 46-104 (291)
100 1p9a_G Platelet glycoprotein I 99.1 2.7E-11 9.2E-16 106.0 1.5 198 28-247 9-206 (290)
101 3rfs_A Internalin B, repeat mo 99.1 5.1E-11 1.7E-15 103.4 3.2 196 210-431 41-236 (272)
102 2ra8_A Uncharacterized protein 99.1 8.7E-10 3E-14 98.8 11.2 168 260-434 137-324 (362)
103 2je0_A Acidic leucine-rich nuc 99.0 1.8E-10 6.2E-15 90.0 5.3 108 56-169 17-124 (149)
104 1m9s_A Internalin B; cell inva 99.0 1.2E-09 4E-14 105.2 11.0 58 56-120 43-100 (605)
105 1p9a_G Platelet glycoprotein I 99.0 3.8E-11 1.3E-15 105.1 0.3 196 4-223 13-208 (290)
106 2je0_A Acidic leucine-rich nuc 99.0 1.6E-09 5.4E-14 84.6 8.5 131 261-399 16-148 (149)
107 3m19_A Variable lymphocyte rec 98.9 5.4E-11 1.8E-15 101.9 -1.3 62 56-120 35-96 (251)
108 3m19_A Variable lymphocyte rec 98.9 1.2E-10 4.1E-15 99.8 0.8 174 5-196 18-191 (251)
109 2ell_A Acidic leucine-rich nuc 98.9 8.5E-10 2.9E-14 88.1 5.3 134 261-402 23-158 (168)
110 1io0_A Tropomodulin; LRR prote 98.9 1.4E-08 4.9E-13 82.0 12.5 119 281-402 29-162 (185)
111 1xeu_A Internalin C; cellular 98.9 3.2E-09 1.1E-13 91.4 9.1 83 339-433 106-188 (263)
112 2ell_A Acidic leucine-rich nuc 98.9 8E-10 2.7E-14 88.2 4.4 135 28-169 23-158 (168)
113 1io0_A Tropomodulin; LRR prote 98.8 8.8E-08 3E-12 77.4 13.6 118 312-432 35-166 (185)
114 3sb4_A Hypothetical leucine ri 98.8 9E-10 3.1E-14 98.4 1.7 37 28-67 24-60 (329)
115 3sb4_A Hypothetical leucine ri 98.8 2.6E-09 8.9E-14 95.4 4.0 268 56-348 25-306 (329)
116 2v70_A SLIT-2, SLIT homolog 2 98.8 1E-09 3.5E-14 91.8 0.8 134 56-196 32-165 (220)
117 1xeu_A Internalin C; cellular 98.7 1.5E-08 5.1E-13 87.1 6.8 58 56-120 41-98 (263)
118 4ay9_X Follicle-stimulating ho 98.7 3.9E-10 1.3E-14 101.7 -3.5 79 210-297 177-255 (350)
119 4ay9_X Follicle-stimulating ho 98.7 5.6E-10 1.9E-14 100.7 -2.8 153 156-321 102-254 (350)
120 3cvr_A Invasion plasmid antige 98.7 1.4E-08 4.6E-13 96.8 6.0 11 261-271 229-239 (571)
121 2v9t_B SLIT homolog 2 protein 98.7 3.3E-09 1.1E-13 88.6 1.4 141 29-178 32-172 (220)
122 2xot_A Amphoterin-induced prot 98.7 2E-09 6.8E-14 97.4 -0.6 132 56-193 39-172 (361)
123 1a9n_A U2A', U2A'; complex (nu 98.7 1.4E-08 4.6E-13 81.7 4.3 134 27-169 17-151 (176)
124 1dce_A Protein (RAB geranylger 98.6 7.3E-09 2.5E-13 99.0 2.5 33 81-115 348-380 (567)
125 2v9t_B SLIT homolog 2 protein 98.6 4.4E-09 1.5E-13 87.9 0.6 142 56-205 32-173 (220)
126 2xot_A Amphoterin-induced prot 98.6 5.1E-09 1.8E-13 94.7 0.9 178 5-199 22-204 (361)
127 1a9n_A U2A', U2A'; complex (nu 98.6 2.1E-08 7.2E-13 80.5 4.2 79 56-141 19-97 (176)
128 2v70_A SLIT-2, SLIT homolog 2 98.6 7.4E-09 2.5E-13 86.5 1.5 152 5-171 15-166 (220)
129 2o6s_A Variable lymphocyte rec 98.6 4.3E-09 1.5E-13 87.2 0.0 82 236-322 28-109 (208)
130 3e6j_A Variable lymphocyte rec 98.6 7.9E-09 2.7E-13 86.9 1.3 132 29-170 40-171 (229)
131 3cvr_A Invasion plasmid antige 98.6 3.9E-08 1.3E-12 93.6 5.5 188 29-255 59-248 (571)
132 2o6s_A Variable lymphocyte rec 98.6 1.1E-08 3.8E-13 84.8 1.2 148 28-193 27-174 (208)
133 1ds9_A Outer arm dynein; leuci 98.6 5E-08 1.7E-12 80.0 4.9 39 81-121 69-107 (198)
134 3e6j_A Variable lymphocyte rec 98.5 2.1E-08 7E-13 84.4 2.4 126 31-169 21-146 (229)
135 1ds9_A Outer arm dynein; leuci 98.5 2.7E-08 9.3E-13 81.6 2.0 36 259-298 45-80 (198)
136 1dce_A Protein (RAB geranylger 98.5 8.8E-09 3E-13 98.5 -1.2 124 133-269 442-567 (567)
137 1w8a_A SLIT protein; signaling 98.4 1.9E-08 6.5E-13 82.0 -0.6 109 57-170 30-138 (192)
138 2wfh_A SLIT homolog 2 protein 98.4 1.1E-07 3.8E-12 77.4 3.1 108 56-170 31-138 (193)
139 1pgv_A TMD-1, tropomodulin TMD 98.4 1.4E-06 4.9E-11 69.7 9.1 123 46-169 32-168 (197)
140 1pgv_A TMD-1, tropomodulin TMD 98.3 4.6E-06 1.6E-10 66.8 10.8 119 280-400 33-166 (197)
141 1w8a_A SLIT protein; signaling 98.3 2.8E-08 9.6E-13 81.0 -2.1 58 83-141 30-87 (192)
142 2wfh_A SLIT homolog 2 protein 98.3 1.3E-07 4.5E-12 77.0 0.4 57 82-141 31-87 (193)
143 2o6r_A Variable lymphocyte rec 98.2 3.5E-07 1.2E-11 73.4 1.3 108 56-169 28-135 (177)
144 2o6r_A Variable lymphocyte rec 98.1 1.2E-06 4.1E-11 70.2 2.8 125 5-143 11-135 (177)
145 4b8c_D Glucose-repressible alc 97.9 1.5E-06 5.3E-11 85.8 0.6 83 80-169 245-327 (727)
146 3g39_A Variable lymphocyte rec 97.9 3.9E-06 1.3E-10 66.6 2.6 85 29-119 30-114 (170)
147 2r9u_A Variable lymphocyte rec 97.9 5.4E-06 1.9E-10 66.0 3.0 61 56-119 57-117 (174)
148 4b8c_D Glucose-repressible alc 97.8 3.8E-06 1.3E-10 83.0 0.8 106 26-142 221-326 (727)
149 3g39_A Variable lymphocyte rec 97.8 2.2E-06 7.6E-11 68.0 -1.3 81 31-120 11-91 (170)
150 3rw6_A Nuclear RNA export fact 97.7 5.1E-05 1.8E-09 64.3 6.0 84 79-165 167-258 (267)
151 2r9u_A Variable lymphocyte rec 97.7 3.6E-06 1.2E-10 67.1 -1.4 62 56-120 33-94 (174)
152 4fdw_A Leucine rich hypothetic 97.6 7.1E-06 2.4E-10 74.8 -1.3 11 209-219 179-189 (401)
153 4fs7_A Uncharacterized protein 97.5 1E-05 3.4E-10 74.0 -0.5 217 182-427 160-376 (394)
154 4fdw_A Leucine rich hypothetic 97.2 5.1E-05 1.8E-09 69.2 0.2 10 235-244 179-188 (401)
155 3rw6_A Nuclear RNA export fact 97.2 0.0022 7.4E-08 54.3 9.9 84 259-346 167-258 (267)
156 4fs7_A Uncharacterized protein 97.1 2.3E-05 7.9E-10 71.6 -3.1 324 26-396 68-393 (394)
157 4gt6_A Cell surface protein; l 97.0 0.00012 4.2E-09 66.8 0.3 127 285-428 262-389 (394)
158 2ifg_A High affinity nerve gro 96.7 0.00046 1.6E-08 61.7 1.8 85 29-120 31-116 (347)
159 2ifg_A High affinity nerve gro 96.6 0.00061 2.1E-08 60.9 2.0 62 56-120 31-93 (347)
160 4gt6_A Cell surface protein; l 96.5 0.001 3.5E-08 60.6 2.9 124 259-399 262-386 (394)
161 4h09_A Hypothetical leucine ri 84.3 0.27 9.1E-06 44.2 0.9 53 56-114 46-98 (379)
162 4h09_A Hypothetical leucine ri 80.1 0.25 8.7E-06 44.4 -0.9 127 260-399 215-341 (379)
163 3rfe_A Platelet glycoprotein I 74.4 2 6.7E-05 31.6 2.7 34 83-117 32-65 (130)
164 3rfe_A Platelet glycoprotein I 71.8 2 6.8E-05 31.5 2.2 40 29-71 31-70 (130)
No 1
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=100.00 E-value=1.2e-36 Score=296.76 Aligned_cols=403 Identities=21% Similarity=0.325 Sum_probs=306.5
Q ss_pred ccchhccccCCcceeeeccccccChhHHHHHHhhhCCCccEEEeccCCccChhhHHHHHhcCCCCceeeccccccchhh-
Q 013172 20 GLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKG- 98 (448)
Q Consensus 20 ~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~- 98 (448)
++..+...+++|++|+|+++ .+++..+..+...+..+|++|++++|..++...+..+...|++|++|++++|.++..+
T Consensus 103 ~l~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~ 181 (592)
T 3ogk_B 103 WVTEISNNLRQLKSVHFRRM-IVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDG 181 (592)
T ss_dssp HHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCS
T ss_pred HHHHHHhhCCCCCeEEeecc-EecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcch
Confidence 45555667788888888887 6777666666655533488888888876677777777778888888888888765544
Q ss_pred --HHHHhhcCCcccEEEeeccCCC---cHHHHHHHhhccccccccccccccCChhHHHHHhhcCCCCCEEeecCCccC-C
Q 013172 99 --VHAVAQGCPLLRVLKLQCINVT---DEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFL-S 172 (448)
Q Consensus 99 --~~~~~~~~~~L~~L~l~~~~~~---~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~ 172 (448)
+..+...+++|++|+++++.++ ...+..+...+++|++|+++++. + .+++.....+++|++|+++..... .
T Consensus 182 ~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~--~~l~~~~~~~~~L~~L~l~~~~~~~~ 258 (592)
T 3ogk_B 182 KWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-I--LELVGFFKAAANLEEFCGGSLNEDIG 258 (592)
T ss_dssp HHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-G--GGGHHHHHHCTTCCEEEECBCCCCTT
T ss_pred hHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-H--HHHHHHHhhhhHHHhhcccccccccc
Confidence 4556667888888888777665 45566666668888888888753 2 234556667788888888753211 1
Q ss_pred hhhHHHHHhcCCCCcEEEecCCCCCChhhHHHHhhcCCCcceEecccccccCchhHHHHhccCcCCceEeccCCcCcChH
Q 013172 173 DMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDD 252 (448)
Q Consensus 173 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 252 (448)
..........+++|+.|.+.+. ....+..+...+++|++|++++|. +.+..+..+...+++|+.|++.+ .+.+.
T Consensus 259 ~~~~~~~l~~~~~L~~L~l~~~---~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~--~~~~~ 332 (592)
T 3ogk_B 259 MPEKYMNLVFPRKLCRLGLSYM---GPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRN--VIGDR 332 (592)
T ss_dssp CTTSSSCCCCCTTCCEEEETTC---CTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEG--GGHHH
T ss_pred hHHHHHHhhccccccccCcccc---chhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccC--ccCHH
Confidence 0111112234677888877663 233344555667899999999866 77777767778899999999984 46777
Q ss_pred HHHHHHHhCCCCcEEEccc----------cccccCchHhHhhhcCCCCcEEeccccCCcCchHHHhhcc-CCCccEEeee
Q 013172 253 AICSIAEGCQNLKKLHIRR----------CYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQ-GCSLQHLNVS 321 (448)
Q Consensus 253 ~~~~~~~~~~~L~~L~l~~----------~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~-~~~L~~L~l~ 321 (448)
++..+...+++|++|++.+ |..+++.++..+...+++|++|++ +++.+++..+..+.. .++|++|++.
T Consensus 333 ~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~ 411 (592)
T 3ogk_B 333 GLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLV 411 (592)
T ss_dssp HHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEE
T ss_pred HHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEe
Confidence 7888888899999999995 677887788887888999999999 556788888888877 6679999997
Q ss_pred C---ccccCh----HHHHHHHhhCCCCCEEeccCcC-CCCHHHHHHHhcCCCCCcEEeccCCCCCChHHHHHHHHcCccC
Q 013172 322 G---CHQIGD----AGIMAIAKGCPELNYLDVSVLQ-NLGDQAMVELGKGCPLLKDVVLSHCRQITDVGLSHLVKNCRML 393 (448)
Q Consensus 322 ~---~~~~~~----~~~~~~~~~~~~L~~L~l~~~~-~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L 393 (448)
+ |+.+++ .++..+...+++|++|+++.|. .+++..+..+...+++|++|++++| .+++.++..+...+++|
T Consensus 412 ~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L 490 (592)
T 3ogk_B 412 LLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV-GESDEGLMEFSRGCPNL 490 (592)
T ss_dssp ECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSC-CSSHHHHHHHHTCCTTC
T ss_pred ecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCC-CCCHHHHHHHHhcCccc
Confidence 3 556765 4677778889999999998754 3788888888888999999999985 59988888888889999
Q ss_pred ceEeccCCCCCCHHHHHHHHhcCccceEEEEeeeeecccccc
Q 013172 394 ESCHMVYCPGITAAGVATVVSGCANIKKVMVEKWKVSERTKR 435 (448)
Q Consensus 394 ~~L~l~~c~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 435 (448)
++|++++|+ +++.++..+...+++|+.|++++|++++.+..
T Consensus 491 ~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~ 531 (592)
T 3ogk_B 491 QKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYRASMTGQD 531 (592)
T ss_dssp CEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCBCCTTCTT
T ss_pred CeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCcCCHHHHH
Confidence 999999998 88888888888899999999999999887653
No 2
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=100.00 E-value=1.3e-35 Score=289.74 Aligned_cols=400 Identities=23% Similarity=0.378 Sum_probs=279.5
Q ss_pred cchhccccCCcceeeeccccccChhHHHHHHhhhCCCccEEEeccCCccChhhHHHHHhcCCCCceeeccccccchhh--
Q 013172 21 LAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKG-- 98 (448)
Q Consensus 21 ~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-- 98 (448)
+..+...+++|++|+++++ .+++..+..+...+ ++|++|++++|..+++.++..+...|++|++|++++|.++..+
T Consensus 97 l~~l~~~~~~L~~L~L~~~-~~~~~~~~~l~~~~-~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~ 174 (594)
T 2p1m_B 97 IEAMSSSYTWLEEIRLKRM-VVTDDCLELIAKSF-KNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGH 174 (594)
T ss_dssp HHHHHHHCTTCCEEEEESC-BCCHHHHHHHHHHC-TTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGG
T ss_pred HHHHHHhCCCCCeEEeeCc-EEcHHHHHHHHHhC-CCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchH
Confidence 4455667788888888887 57777776666555 7888888888866777777777777888888888887765443
Q ss_pred -HHHHhhcCCcccEEEeeccC--CCcHHHHHHHhhccccccccccccccCChhHHHHHhhcCCCCCEEeecCCcc-CChh
Q 013172 99 -VHAVAQGCPLLRVLKLQCIN--VTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYF-LSDM 174 (448)
Q Consensus 99 -~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~ 174 (448)
+..+...+++|++|+++++. ++...+..+...+++|++|+++++..+ .+++.....+++|+.|.+..+.. +...
T Consensus 175 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~--~~l~~~~~~~~~L~~L~l~~~~~~~~~~ 252 (594)
T 2p1m_B 175 WLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPL--EKLATLLQRAPQLEELGTGGYTAEVRPD 252 (594)
T ss_dssp GGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCH--HHHHHHHHHCTTCSEEECSBCCCCCCHH
T ss_pred HHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcH--HHHHHHHhcCCcceEcccccccCccchh
Confidence 33444567788888887664 566666666666788888888876433 34666777788888888765532 1111
Q ss_pred ---hHHHHHhcCCCCcEEEecCCCCCChhhHHHHhhcCCCcceEecccccccCchhHHHHhccCcCCceEeccCCcCcCh
Q 013172 175 ---GLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGD 251 (448)
Q Consensus 175 ---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 251 (448)
.+......+++|+.+. +........+..+...+++|++|++++|. +.+..+..+...+++|++|++.+| +.+
T Consensus 253 ~~~~l~~~l~~~~~L~~Ls--~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~--~~~ 327 (594)
T 2p1m_B 253 VYSGLSVALSGCKELRCLS--GFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY--IED 327 (594)
T ss_dssp HHHHHHHHHHTCTTCCEEE--CCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG--GHH
T ss_pred hHHHHHHHHhcCCCccccc--CCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc--cCH
Confidence 1222334567777662 11223333444444456888888888865 666666666777888888888875 556
Q ss_pred HHHHHHHHhCCCCcEEEcc--------ccccccCchHhHhhhcCCCCcEEeccccCCcCchHHHhhcc-CCCccEEeee-
Q 013172 252 DAICSIAEGCQNLKKLHIR--------RCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQ-GCSLQHLNVS- 321 (448)
Q Consensus 252 ~~~~~~~~~~~~L~~L~l~--------~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~-~~~L~~L~l~- 321 (448)
.++..+...+++|++|++. ++..+++.++..+...+++|++|.+ +|+.+++.++..+.. .++|++|++.
T Consensus 328 ~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~-~~~~l~~~~~~~l~~~~~~L~~L~L~~ 406 (594)
T 2p1m_B 328 AGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLY-FCRQMTNAALITIARNRPNMTRFRLCI 406 (594)
T ss_dssp HHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEE-EESCCCHHHHHHHHHHCTTCCEEEEEE
T ss_pred HHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHH-hcCCcCHHHHHHHHhhCCCcceeEeec
Confidence 6666777778888888883 3445666666666667888888855 445677777777663 5578888888
Q ss_pred ----CccccC----hHHHHHHHhhCCCCCEEeccCcCCCCHHHHHHHhcCCCCCcEEeccCCCCCChHHHHHHHHcCccC
Q 013172 322 ----GCHQIG----DAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSHCRQITDVGLSHLVKNCRML 393 (448)
Q Consensus 322 ----~~~~~~----~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L 393 (448)
+|+.++ +.++..+...+++|+.|++++ .+++.++..+...+++|++|++++|. +++.++..+...+++|
T Consensus 407 ~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L 483 (594)
T 2p1m_B 407 IEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSL 483 (594)
T ss_dssp SSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCC-SSHHHHHHHHHHCTTC
T ss_pred ccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCC-CcHHHHHHHHhcCCCc
Confidence 566777 667777777788888888866 57777777776667888888888754 7887777776678888
Q ss_pred ceEeccCCCCCCHHHHHHHHhcCccceEEEEeeeeeccccc
Q 013172 394 ESCHMVYCPGITAAGVATVVSGCANIKKVMVEKWKVSERTK 434 (448)
Q Consensus 394 ~~L~l~~c~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 434 (448)
+.|++++|+. ++.++..++..+++|+.|++++|++++.+.
T Consensus 484 ~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 523 (594)
T 2p1m_B 484 RKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSVSFGAC 523 (594)
T ss_dssp CEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCCBHHHH
T ss_pred CEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCCCHHHH
Confidence 8888888874 777777666778888888888888765544
No 3
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=100.00 E-value=5.7e-34 Score=277.94 Aligned_cols=408 Identities=19% Similarity=0.274 Sum_probs=323.2
Q ss_pred eeEEEeeeeccccccccccchhccccCC-cceeeeccccccChhHHHHHHhhhCCCccEEEeccCCccChhh---HHHHH
Q 013172 3 KLVLNFGFCKGCYVGDQGLAAVGKVCNQ-LEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVS---LEAVG 78 (448)
Q Consensus 3 ~~~L~~s~~~~~~~~~~~~~~l~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~ 78 (448)
..+|+++.| .+++..+..++..++. |++|++++|..+...++..+...+ ++|++|++++|. +++.+ +..+.
T Consensus 114 L~~L~L~~~---~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~-~~L~~L~L~~~~-~~~~~~~~l~~~~ 188 (592)
T 3ogk_B 114 LKSVHFRRM---IVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHC-RKIKTLLMEESS-FSEKDGKWLHELA 188 (592)
T ss_dssp CCEEEEESC---BCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHC-TTCSEEECTTCE-EECCCSHHHHHHH
T ss_pred CCeEEeecc---EecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhC-CCCCEEECcccc-ccCcchhHHHHHH
Confidence 457888775 4666677777766777 999999999767777787777777 899999999985 44333 66677
Q ss_pred hcCCCCceeeccccccc---hhhHHHHhhcCCcccEEEeeccCCCcHHHHHHHhhccccccccccccccCCh-hHHHHHh
Q 013172 79 SHCKSLETLSLDSEFIH---NKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTD-KGLHAVG 154 (448)
Q Consensus 79 ~~~~~L~~L~l~~~~~~---~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~ 154 (448)
..+++|++|+++++.++ ...+..+...+++|++|+++++.+.. +......+++|++|+++.+..... .......
T Consensus 189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~--l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 266 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE--LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNL 266 (592)
T ss_dssp HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG--GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCC
T ss_pred hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH--HHHHHhhhhHHHhhcccccccccchHHHHHHh
Confidence 88999999999998875 45677777789999999999887765 234445589999999975332211 1111223
Q ss_pred hcCCCCCEEeecCCccCChhhHHHHHhcCCCCcEEEecCCCCCChhhHHHHhhcCCCcceEecccccccCchhHHHHhcc
Q 013172 155 KGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRG 234 (448)
Q Consensus 155 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 234 (448)
..+++|+.+.+++.. ...+..+...+++|++|++.+|. +....+..+...+++|++|++.+ .+.+..+..+...
T Consensus 267 ~~~~~L~~L~l~~~~---~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~--~~~~~~l~~~~~~ 340 (592)
T 3ogk_B 267 VFPRKLCRLGLSYMG---PNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRN--VIGDRGLEVLAQY 340 (592)
T ss_dssp CCCTTCCEEEETTCC---TTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEG--GGHHHHHHHHHHH
T ss_pred hccccccccCccccc---hhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccC--ccCHHHHHHHHHh
Confidence 356899999998753 33345556678999999999976 77777767777789999999983 4566677777788
Q ss_pred CcCCceEeccC----------CcCcChHHHHHHHHhCCCCcEEEccccccccCchHhHhhhcCCCCcEEeccc---cCCc
Q 013172 235 CKSLQALHLVD----------CSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRF---CDRV 301 (448)
Q Consensus 235 ~~~L~~L~l~~----------~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~---~~~~ 301 (448)
+++|++|++++ |+.+++.++..+...+++|++|++ ++..+++..+..+...+++|++|++++ ++.+
T Consensus 341 ~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l 419 (592)
T 3ogk_B 341 CKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERI 419 (592)
T ss_dssp CTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCC
T ss_pred CCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccc
Confidence 99999999995 888998888888888999999999 456788888888887899999999984 4566
Q ss_pred Cc----hHHHh-hccCCCccEEeeeCcc-ccChHHHHHHHhhCCCCCEEeccCcCCCCHHHHHHHhcCCCCCcEEeccCC
Q 013172 302 GD----EALIS-IGQGCSLQHLNVSGCH-QIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSHC 375 (448)
Q Consensus 302 ~~----~~~~~-l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c 375 (448)
++ .++.. +...++|++|+++.|. .+++.++..+...+++|+.|++++| .+++.++..+...+++|++|++++|
T Consensus 420 ~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~L~l~~n 498 (592)
T 3ogk_B 420 TDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV-GESDEGLMEFSRGCPNLQKLEMRGC 498 (592)
T ss_dssp SSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSC-CSSHHHHHHHHTCCTTCCEEEEESC
T ss_pred cCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCC-CCCHHHHHHHHhcCcccCeeeccCC
Confidence 65 24444 3445679999998765 4788888888888999999999998 6899888888889999999999998
Q ss_pred CCCChHHHHHHHHcCccCceEeccCCCCCCHHHHHHHHhcCccceEEEEeee
Q 013172 376 RQITDVGLSHLVKNCRMLESCHMVYCPGITAAGVATVVSGCANIKKVMVEKW 427 (448)
Q Consensus 376 ~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~L~l~~~ 427 (448)
. +++.++..+...+++|+.|++++|+ ++..++..+...+|.++...+..+
T Consensus 499 ~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 499 C-FSERAIAAAVTKLPSLRYLWVQGYR-ASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp C-CBHHHHHHHHHHCSSCCEEEEESCB-CCTTCTTGGGGCCTTEEEEEECCC
T ss_pred C-CcHHHHHHHHHhcCccCeeECcCCc-CCHHHHHHHHHhCCCcEEEEecCc
Confidence 7 8998888888889999999999998 888887778888999888777654
No 4
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=100.00 E-value=6.1e-33 Score=270.87 Aligned_cols=408 Identities=22% Similarity=0.327 Sum_probs=322.3
Q ss_pred eeEEEeeeeccccccccccchhccccCCcceeeeccccccChhHHHHHHhhhCCCccEEEeccCCccChhh---HHHHHh
Q 013172 3 KLVLNFGFCKGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVS---LEAVGS 79 (448)
Q Consensus 3 ~~~L~~s~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~ 79 (448)
..+|+++.| .+++..+..+.+.+++|++|++++|..+.+.++..+...+ ++|++|++++|. +++.. +..+..
T Consensus 107 L~~L~L~~~---~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~-~~L~~L~L~~~~-i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 107 LEEIRLKRM---VVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATC-RNLKELDLRESD-VDDVSGHWLSHFPD 181 (594)
T ss_dssp CCEEEEESC---BCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHC-TTCCEEECTTCE-EECCCGGGGGGSCT
T ss_pred CCeEEeeCc---EEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhC-CCCCEEeCcCCc-cCCcchHHHHHHhh
Confidence 457888775 4777777788777899999999999778887788887776 899999999986 44433 444455
Q ss_pred cCCCCceeeccccc--cchhhHHHHhhcCCcccEEEeeccCCCcHHHHHHHhhcccccccccccccc-CCh---hHHHHH
Q 013172 80 HCKSLETLSLDSEF--IHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQ-FTD---KGLHAV 153 (448)
Q Consensus 80 ~~~~L~~L~l~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~---~~~~~~ 153 (448)
.+++|++|+++++. ++...+..+...+++|++|+++++.. ...+..+...+++|++|.+..+.. +.. .++...
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~ 260 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVP-LEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVA 260 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSC-HHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHH
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCc-HHHHHHHHhcCCcceEcccccccCccchhhHHHHHHH
Confidence 78999999999885 66677777777799999999987632 233566666799999999876532 222 223334
Q ss_pred hhcCCCCCEE-eecCCccCChhhHHHHHhcCCCCcEEEecCCCCCChhhHHHHhhcCCCcceEecccccccCchhHHHHh
Q 013172 154 GKGCKKLKNL-TLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVG 232 (448)
Q Consensus 154 ~~~~~~L~~L-~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~ 232 (448)
...+++|+.+ .+.+ .....+..+...+++|++|++.++. +....+..+...+++|++|++.+| +.+..+..+.
T Consensus 261 l~~~~~L~~Ls~~~~---~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~--~~~~~l~~l~ 334 (594)
T 2p1m_B 261 LSGCKELRCLSGFWD---AVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY--IEDAGLEVLA 334 (594)
T ss_dssp HHTCTTCCEEECCBT---CCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHH
T ss_pred HhcCCCcccccCCcc---cchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc--cCHHHHHHHH
Confidence 5678999998 3433 3444455555568999999999977 777777777778899999999986 5566677777
Q ss_pred ccCcCCceEec--------cCCcCcChHHHHHHHHhCCCCcEEEccccccccCchHhHhhhcCCCCcEEecc-----ccC
Q 013172 233 RGCKSLQALHL--------VDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLR-----FCD 299 (448)
Q Consensus 233 ~~~~~L~~L~l--------~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~-----~~~ 299 (448)
..+++|++|++ ..+..+++.++..+...+++|++|.+. +..+++.++..+...+++|++|+++ +|+
T Consensus 335 ~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~-~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~ 413 (594)
T 2p1m_B 335 STCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYF-CRQMTNAALITIARNRPNMTRFRLCIIEPKAPD 413 (594)
T ss_dssp HHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEE-ESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCC
T ss_pred HhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHh-cCCcCHHHHHHHHhhCCCcceeEeecccCCCcc
Confidence 77999999999 445678888888888889999999664 4678887888887789999999999 566
Q ss_pred CcC----chHHHhh-ccCCCccEEeeeCccccChHHHHHHHhhCCCCCEEeccCcCCCCHHHHHHHhcCCCCCcEEeccC
Q 013172 300 RVG----DEALISI-GQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSH 374 (448)
Q Consensus 300 ~~~----~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~ 374 (448)
.++ +.++..+ ...++|+.|++++ .+++.++..+...+++|+.|++++| .+++.++..++..+++|++|++++
T Consensus 414 ~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~L~~L~L~~ 490 (594)
T 2p1m_B 414 YLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFA-GDSDLGMHHVLSGCDSLRKLEIRD 490 (594)
T ss_dssp TTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESC-CSSHHHHHHHHHHCTTCCEEEEES
T ss_pred cccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCC-CCcHHHHHHHHhcCCCcCEEECcC
Confidence 777 5555554 3456799999976 7888888888878999999999999 588999988877899999999999
Q ss_pred CCCCChHHHHHHHHcCccCceEeccCCCCCCHHHHHHHHhcCccceEEEEeeee
Q 013172 375 CRQITDVGLSHLVKNCRMLESCHMVYCPGITAAGVATVVSGCANIKKVMVEKWK 428 (448)
Q Consensus 375 c~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~L~l~~~~ 428 (448)
|. +++.++..+...+++|+.|++++|+. +..++..+...+|+|+...+..+.
T Consensus 491 n~-~~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~l~~~lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 491 CP-FGDKALLANASKLETMRSLWMSSCSV-SFGACKLLGQKMPKLNVEVIDERG 542 (594)
T ss_dssp CS-CCHHHHHHTGGGGGGSSEEEEESSCC-BHHHHHHHHHHCTTEEEEEECSSS
T ss_pred CC-CcHHHHHHHHHhCCCCCEEeeeCCCC-CHHHHHHHHHhCCCCEEEEecCCC
Confidence 76 68888888887899999999999985 888888887889999877776553
No 5
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=4.6e-30 Score=242.55 Aligned_cols=404 Identities=21% Similarity=0.288 Sum_probs=241.6
Q ss_pred eeEEEeeeeccccccccccchhccccCCcceeeeccccccChhHHHHHHh---hhCCCccEEEeccCCccChhhHHHHHh
Q 013172 3 KLVLNFGFCKGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAH---GCGKSLKSLGIAACVKITDVSLEAVGS 79 (448)
Q Consensus 3 ~~~L~~s~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~ 79 (448)
..+||++.|. +++..+..+...+++|++|+++++ .+.+.++..+.. .+ ++|++|+++++. +++..+..+..
T Consensus 5 l~~L~Ls~~~---l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~-l~~~~~~~l~~ 78 (461)
T 1z7x_W 5 IQSLDIQCEE---LSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVN-PALAELNLRSNE-LGDVGVHCVLQ 78 (461)
T ss_dssp EEEEEEESCC---CCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHHHHHTC-TTCCEEECTTCC-CHHHHHHHHHH
T ss_pred ceehhhhhcc---cCchhHHHHHhhcCCccEEEccCC-CCCHHHHHHHHHHHHhC-CCcCEEeCCCCc-CChHHHHHHHH
Confidence 4577776654 444445554566678888888877 466554444332 23 678888888764 66666666666
Q ss_pred cCC----CCceeeccccccchhh---HHHHhhcCCcccEEEeeccCCCcHHHHHHHhh----ccccccccccccccCChh
Q 013172 80 HCK----SLETLSLDSEFIHNKG---VHAVAQGCPLLRVLKLQCINVTDEALVAVGNQ----CLSLELLALYSFQQFTDK 148 (448)
Q Consensus 80 ~~~----~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~~~ 148 (448)
.++ +|++|++++|.++..+ +...+..+++|++|+++++.+++..+..+... .++|++|+++++ .+...
T Consensus 79 ~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~ 157 (461)
T 1z7x_W 79 GLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAA 157 (461)
T ss_dssp TTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGG
T ss_pred HHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCC-CCCHH
Confidence 666 6888888888777644 33334557788888888777776666655543 346888888765 34443
Q ss_pred H---HHHHhhcCCCCCEEeecCCccCChhhHHHHHh----cCCCCcEEEecCCCCCChhh---HHHHhhcCCCcceEecc
Q 013172 149 G---LHAVGKGCKKLKNLTLSDCYFLSDMGLEAIAT----GCKELTHLEINGCHNIGTMG---LESIGKFCRNLTELALL 218 (448)
Q Consensus 149 ~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~----~~~~L~~L~l~~~~~~~~~~---~~~l~~~~~~L~~L~l~ 218 (448)
+ +......+++|++|+++++. +.+.+...+.. ..++|++|+++++. +...+ +......+++|++|+++
T Consensus 158 ~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls 235 (461)
T 1z7x_W 158 SCEPLASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCG-VTSDNCRDLCGIVASKASLRELALG 235 (461)
T ss_dssp GHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSC-CBTTHHHHHHHHHHHCTTCCEEECC
T ss_pred HHHHHHHHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCC-CcHHHHHHHHHHHHhCCCccEEecc
Confidence 3 33444456788888888775 55544444433 24578888887753 44433 22223345778888887
Q ss_pred cccccCchhHHHH----hccCcCCceEeccCCcCcChHHH---HHHHHhCCCCcEEEccccccccCchHhHhhh----cC
Q 013172 219 YCQRIGNLALLEV----GRGCKSLQALHLVDCSSIGDDAI---CSIAEGCQNLKKLHIRRCYKIGNNGIVAVGE----HC 287 (448)
Q Consensus 219 ~~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~----~~ 287 (448)
++ .+.+..+..+ ...+++|++|++++| .+++.+. ......+++|++|+++++ .+++.+...+.. ..
T Consensus 236 ~n-~l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~ 312 (461)
T 1z7x_W 236 SN-KLGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGN-ELGDEGARLLCETLLEPG 312 (461)
T ss_dssp SS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTC-CCHHHHHHHHHHHHTSTT
T ss_pred CC-cCChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCC-CCchHHHHHHHHHhccCC
Confidence 74 4444433222 224677788888775 4565543 233344777788877775 355444433332 22
Q ss_pred CCCcEEeccccCCcCchHHH----hhccCCCccEEeeeCccccChHHHHHHHhh----CCCCCEEeccCcCCCCHHHHHH
Q 013172 288 NSLTELSLRFCDRVGDEALI----SIGQGCSLQHLNVSGCHQIGDAGIMAIAKG----CPELNYLDVSVLQNLGDQAMVE 359 (448)
Q Consensus 288 ~~L~~L~l~~~~~~~~~~~~----~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~l~~~~~~~ 359 (448)
++|++|++++|. +++.+.. .+...++|++|+++++ .+++.+...+... .++|++|++++| .+++.++..
T Consensus 313 ~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~ 389 (461)
T 1z7x_W 313 CQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSS 389 (461)
T ss_dssp CCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHH
T ss_pred ccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCC-CCChhhHHH
Confidence 577777777754 5544332 2334466777777774 5666555544432 457777777777 566644433
Q ss_pred Hh---cCCCCCcEEeccCCCCCChHHHHHHHHcCc----cCceEeccCCCCCC--HHHHHHHHhcCccceEE
Q 013172 360 LG---KGCPLLKDVVLSHCRQITDVGLSHLVKNCR----MLESCHMVYCPGIT--AAGVATVVSGCANIKKV 422 (448)
Q Consensus 360 ~~---~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~----~L~~L~l~~c~~~~--~~~~~~~~~~~~~L~~L 422 (448)
+. ..+++|++|++++| .+++.++..+.+.++ +|+.|.+.++..-. ...+..+....|+|+.+
T Consensus 390 l~~~l~~~~~L~~L~l~~N-~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~l~~l~~~~p~l~i~ 460 (461)
T 1z7x_W 390 LAATLLANHSLRELDLSNN-CLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 460 (461)
T ss_dssp HHHHHHHCCCCCEEECCSS-SCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHCTTSEEE
T ss_pred HHHHHHhCCCccEEECCCC-CCCHHHHHHHHHHhccCCcchhheeecccccCHHHHHHHHHHhccCCCcEee
Confidence 32 34677777777774 477777766665443 37777776654221 23344455556666654
No 6
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=6.8e-29 Score=234.57 Aligned_cols=389 Identities=23% Similarity=0.294 Sum_probs=293.1
Q ss_pred CCcceeeeccccccChhHHHHHHhhhCCCccEEEeccCCccChhh---HHHHHhcCCCCceeeccccccchhhHHHHhhc
Q 013172 29 NQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVS---LEAVGSHCKSLETLSLDSEFIHNKGVHAVAQG 105 (448)
Q Consensus 29 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 105 (448)
++|++|+++++ .+++..+..++..+ ++|++|++++|. +++.. +......+++|++|++++|.+...++..+...
T Consensus 3 ~~l~~L~Ls~~-~l~~~~~~~~~~~~-~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 79 (461)
T 1z7x_W 3 LDIQSLDIQCE-ELSDARWAELLPLL-QQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQG 79 (461)
T ss_dssp EEEEEEEEESC-CCCHHHHHHHHHHH-TTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHT
T ss_pred ccceehhhhhc-ccCchhHHHHHhhc-CCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHH
Confidence 67999999988 68888888877777 899999999986 77654 34445678999999999999988888888777
Q ss_pred CC----cccEEEeeccCCCcHH---HHHHHhhccccccccccccccCChhHHHHHhhc----CCCCCEEeecCCccCChh
Q 013172 106 CP----LLRVLKLQCINVTDEA---LVAVGNQCLSLELLALYSFQQFTDKGLHAVGKG----CKKLKNLTLSDCYFLSDM 174 (448)
Q Consensus 106 ~~----~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~~~ 174 (448)
++ +|++|+++++.+++.. +......+++|++|+++++. +.+.+...+... .++|++|++++|. +++.
T Consensus 80 l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~ 157 (461)
T 1z7x_W 80 LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAA 157 (461)
T ss_dssp TCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGG
T ss_pred HhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCC-CCHH
Confidence 77 7999999999998744 33333457999999999854 666666655543 4579999999996 5554
Q ss_pred hH---HHHHhcCCCCcEEEecCCCCCChhhHHHHhh----cCCCcceEecccccccCchh---HHHHhccCcCCceEecc
Q 013172 175 GL---EAIATGCKELTHLEINGCHNIGTMGLESIGK----FCRNLTELALLYCQRIGNLA---LLEVGRGCKSLQALHLV 244 (448)
Q Consensus 175 ~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~----~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~ 244 (448)
+. ......+++|++|+++++. +...+...+.. ..++|++|++++| .+...+ +...+..+++|++|+++
T Consensus 158 ~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls 235 (461)
T 1z7x_W 158 SCEPLASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESC-GVTSDNCRDLCGIVASKASLRELALG 235 (461)
T ss_dssp GHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTS-CCBTTHHHHHHHHHHHCTTCCEEECC
T ss_pred HHHHHHHHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCC-CCcHHHHHHHHHHHHhCCCccEEecc
Confidence 43 3445568999999999854 66655555543 3469999999995 455443 44555678999999999
Q ss_pred CCcCcChHHHHHHHH----hCCCCcEEEccccccccCchH---hHhhhcCCCCcEEeccccCCcCchHHHhhccC-----
Q 013172 245 DCSSIGDDAICSIAE----GCQNLKKLHIRRCYKIGNNGI---VAVGEHCNSLTELSLRFCDRVGDEALISIGQG----- 312 (448)
Q Consensus 245 ~~~~~~~~~~~~~~~----~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~----- 312 (448)
++ .+.+.++..+.. .+++|++|++++| .++..+. ......+++|++|+++++ .+++.+...+...
T Consensus 236 ~n-~l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~ 312 (461)
T 1z7x_W 236 SN-KLGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGN-ELGDEGARLLCETLLEPG 312 (461)
T ss_dssp SS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTC-CCHHHHHHHHHHHHTSTT
T ss_pred CC-cCChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCC-CCchHHHHHHHHHhccCC
Confidence 96 566666655443 4789999999997 5666553 333456899999999996 5777666665543
Q ss_pred CCccEEeeeCccccChHH---HHHHHhhCCCCCEEeccCcCCCCHHHHHHHhc----CCCCCcEEeccCCCCCChHHHHH
Q 013172 313 CSLQHLNVSGCHQIGDAG---IMAIAKGCPELNYLDVSVLQNLGDQAMVELGK----GCPLLKDVVLSHCRQITDVGLSH 385 (448)
Q Consensus 313 ~~L~~L~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~----~~~~L~~L~l~~c~~l~~~~~~~ 385 (448)
++|++|++++| .++..+ +......+++|++|++++| .+++.+...+.. ..++|++|++++| .+++.+...
T Consensus 313 ~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~ 389 (461)
T 1z7x_W 313 CQLESLWVKSC-SFTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSS 389 (461)
T ss_dssp CCCCEEECTTS-CCBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHH
T ss_pred ccceeeEcCCC-CCchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCC-CCChhhHHH
Confidence 57999999996 466654 4445567899999999999 788877766643 2679999999996 589865554
Q ss_pred HH---HcCccCceEeccCCCCCCHHHHHHHHhcC----ccceEEEEeeeeecc
Q 013172 386 LV---KNCRMLESCHMVYCPGITAAGVATVVSGC----ANIKKVMVEKWKVSE 431 (448)
Q Consensus 386 ~~---~~~~~L~~L~l~~c~~~~~~~~~~~~~~~----~~L~~L~l~~~~~~~ 431 (448)
+. ..+++|++|++++|+ ++..++..+...+ .+|+.|.+.++...+
T Consensus 390 l~~~l~~~~~L~~L~l~~N~-i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 390 LAATLLANHSLRELDLSNNC-LGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp HHHHHHHCCCCCEEECCSSS-CCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred HHHHHHhCCCccEEECCCCC-CCHHHHHHHHHHhccCCcchhheeecccccCH
Confidence 43 358999999999986 8888777766544 359999888776654
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.93 E-value=1.9e-27 Score=232.42 Aligned_cols=128 Identities=17% Similarity=0.070 Sum_probs=70.5
Q ss_pred eeEEEeeeeccccccccccchhccccCCcceeeeccccccChhHHHHHHhhhCCCccEEEeccCCccChhhHHHHHhcCC
Q 013172 3 KLVLNFGFCKGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCK 82 (448)
Q Consensus 3 ~~~L~~s~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 82 (448)
+.+||++.|.+..+....+. .+++|++|+++++ .+.......+ ..+ ++|++|++++|. +....... ...++
T Consensus 35 l~~L~Ls~n~i~~~~~~~~~----~l~~L~~L~Ls~n-~i~~~~~~~~-~~l-~~L~~L~Ls~n~-l~~~~~~~-~~~l~ 105 (606)
T 3t6q_A 35 TECLEFSFNVLPTIQNTTFS----RLINLTFLDLTRC-QIYWIHEDTF-QSQ-HRLDTLVLTANP-LIFMAETA-LSGPK 105 (606)
T ss_dssp CCEEECTTCCCSEECTTTST----TCTTCSEEECTTC-CCCEECTTTT-TTC-TTCCEEECTTCC-CSEECTTT-TSSCT
T ss_pred CcEEEccCCccCcCChhHhc----cCccceEEECCCC-ccceeChhhc-cCc-cccCeeeCCCCc-ccccChhh-hcccc
Confidence 45788888777766544443 3478888888877 3333221112 222 677778877764 33322222 24567
Q ss_pred CCceeeccccccchhhHHHHhhcCCcccEEEeeccCCCcHHHHHHHhhccccccccccc
Q 013172 83 SLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYS 141 (448)
Q Consensus 83 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 141 (448)
+|++|++++|.+.......+ ..+++|++|++++|.+.......+.. +++|++|++++
T Consensus 106 ~L~~L~L~~n~i~~l~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~ 162 (606)
T 3t6q_A 106 ALKHLFFIQTGISSIDFIPL-HNQKTLESLYLGSNHISSIKLPKGFP-TEKLKVLDFQN 162 (606)
T ss_dssp TCCEEECTTSCCSCGGGSCC-TTCTTCCEEECCSSCCCCCCCCTTCC-CTTCCEEECCS
T ss_pred cccEeeccccCcccCCcchh-ccCCcccEEECCCCcccccCcccccC-CcccCEEEccc
Confidence 77777777766654332222 34566666666666554422222222 55666666655
No 8
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.92 E-value=2.3e-26 Score=229.72 Aligned_cols=136 Identities=15% Similarity=0.118 Sum_probs=66.8
Q ss_pred cCCCCcEEeccccCCcCchHHHhhccCCCccEEeeeCccccChHHHHHHHhhCCCCCEEeccCcCCCCHHHHHHHhcCCC
Q 013172 286 HCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCP 365 (448)
Q Consensus 286 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 365 (448)
.+++|++|+++++ .+.......+...++|+.|+++++. ++.. +......+++|++|++++| .++...... ...++
T Consensus 416 ~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~-~p~~~~~l~~L~~L~L~~N-~l~~~~p~~-l~~l~ 490 (768)
T 3rgz_A 416 NCSELVSLHLSFN-YLSGTIPSSLGSLSKLRDLKLWLNM-LEGE-IPQELMYVKTLETLILDFN-DLTGEIPSG-LSNCT 490 (768)
T ss_dssp GCTTCCEEECCSS-EEESCCCGGGGGCTTCCEEECCSSC-CCSC-CCGGGGGCTTCCEEECCSS-CCCSCCCGG-GGGCT
T ss_pred cCCCCCEEECcCC-cccCcccHHHhcCCCCCEEECCCCc-ccCc-CCHHHcCCCCceEEEecCC-cccCcCCHH-HhcCC
Confidence 3455555555553 2332333344444556666665532 2211 1112234566666666666 232211111 23466
Q ss_pred CCcEEeccCCCCCChHHHHHHHHcCccCceEeccCCCCCCHHHHHHHHhcCccceEEEEeeeeec
Q 013172 366 LLKDVVLSHCRQITDVGLSHLVKNCRMLESCHMVYCPGITAAGVATVVSGCANIKKVMVEKWKVS 430 (448)
Q Consensus 366 ~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 430 (448)
+|++|++++|. ++......+ ..+++|+.|++++|..... ++..+..+++|+.|++++|++.
T Consensus 491 ~L~~L~L~~N~-l~~~~p~~~-~~l~~L~~L~L~~N~l~~~--~p~~l~~l~~L~~L~Ls~N~l~ 551 (768)
T 3rgz_A 491 NLNWISLSNNR-LTGEIPKWI-GRLENLAILKLSNNSFSGN--IPAELGDCRSLIWLDLNTNLFN 551 (768)
T ss_dssp TCCEEECCSSC-CCSCCCGGG-GGCTTCCEEECCSSCCEEE--CCGGGGGCTTCCEEECCSSEEE
T ss_pred CCCEEEccCCc-cCCcCChHH-hcCCCCCEEECCCCcccCc--CCHHHcCCCCCCEEECCCCccC
Confidence 77777776643 443222222 2466777777776653211 1123456777777777777665
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.92 E-value=8.1e-27 Score=227.95 Aligned_cols=400 Identities=17% Similarity=0.125 Sum_probs=186.0
Q ss_pred eeEEEeeeeccccccccccchhccccCCcceeeeccccccChhHHHHHHhhhCCCccEEEeccCCccChhhHHHHHhcCC
Q 013172 3 KLVLNFGFCKGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCK 82 (448)
Q Consensus 3 ~~~L~~s~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 82 (448)
..+|+++.|.+..+....+. .+++|++|+++++ .+.......+ ..+ ++|++|++++|. ++...... ...++
T Consensus 59 L~~L~Ls~n~i~~~~~~~~~----~l~~L~~L~Ls~n-~l~~~~~~~~-~~l-~~L~~L~L~~n~-i~~l~~~~-~~~l~ 129 (606)
T 3t6q_A 59 LTFLDLTRCQIYWIHEDTFQ----SQHRLDTLVLTAN-PLIFMAETAL-SGP-KALKHLFFIQTG-ISSIDFIP-LHNQK 129 (606)
T ss_dssp CSEEECTTCCCCEECTTTTT----TCTTCCEEECTTC-CCSEECTTTT-SSC-TTCCEEECTTSC-CSCGGGSC-CTTCT
T ss_pred ceEEECCCCccceeChhhcc----CccccCeeeCCCC-cccccChhhh-ccc-ccccEeeccccC-cccCCcch-hccCC
Confidence 35778877766655444333 3477888888877 3332211111 222 677777777764 33322222 24567
Q ss_pred CCceeeccccccchhhHHHHhhcCCcccEEEeeccCCCcHHHHHHHhhccccc--cccccccc-----------------
Q 013172 83 SLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLE--LLALYSFQ----------------- 143 (448)
Q Consensus 83 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~--~L~l~~~~----------------- 143 (448)
+|++|++++|.+.......+.. +++|++|+++++.+.......+.. +++|+ .|+++++.
T Consensus 130 ~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L 207 (606)
T 3t6q_A 130 TLESLYLGSNHISSIKLPKGFP-TEKLKVLDFQNNAIHYLSKEDMSS-LQQATNLSLNLNGNDIAGIEPGAFDSAVFQSL 207 (606)
T ss_dssp TCCEEECCSSCCCCCCCCTTCC-CTTCCEEECCSSCCCEECHHHHHT-TTTCCSEEEECTTCCCCEECTTTTTTCEEEEE
T ss_pred cccEEECCCCcccccCcccccC-CcccCEEEcccCcccccChhhhhh-hcccceeEEecCCCccCccChhHhhhcccccc
Confidence 7777777777665543333333 667777777666665443333332 44444 33333211
Q ss_pred ---------------------------------------------------------cCChhHHHHHhhcCCCCCEEeec
Q 013172 144 ---------------------------------------------------------QFTDKGLHAVGKGCKKLKNLTLS 166 (448)
Q Consensus 144 ---------------------------------------------------------~~~~~~~~~~~~~~~~L~~L~l~ 166 (448)
.+.. .....+..+++|++|+++
T Consensus 208 ~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~ 286 (606)
T 3t6q_A 208 NFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN-ISSNTFHCFSGLQELDLT 286 (606)
T ss_dssp ECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSS-CCTTTTTTCTTCSEEECT
T ss_pred ccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCc-cCHHHhccccCCCEEecc
Confidence 0000 001113346788888888
Q ss_pred CCccCChhhHHHHHhcCCCCcEEEecCCCCCChhhHHHHhhcCCCcceEecccccccCchhHHHHhccCcCCceEeccCC
Q 013172 167 DCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDC 246 (448)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 246 (448)
++. +.. +......+++|++|++.++. +.......+ ..+++|++|+++++...... ....+..+++|+.|+++++
T Consensus 287 ~n~-l~~--lp~~l~~l~~L~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~l~~n~~~~~~-~~~~~~~l~~L~~L~l~~n 360 (606)
T 3t6q_A 287 ATH-LSE--LPSGLVGLSTLKKLVLSANK-FENLCQISA-SNFPSLTHLSIKGNTKRLEL-GTGCLENLENLRELDLSHD 360 (606)
T ss_dssp TSC-CSC--CCSSCCSCTTCCEEECTTCC-CSBGGGGCG-GGCTTCSEEECCSCSSCCBC-CSSTTTTCTTCCEEECCSS
T ss_pred CCc-cCC--CChhhcccccCCEEECccCC-cCcCchhhh-hccCcCCEEECCCCCccccc-chhhhhccCcCCEEECCCC
Confidence 775 332 11112356777777777643 332212222 22466666666654211111 1111234555555555553
Q ss_pred cCcChHH-HHHHHHhCCCCcEEEccccc-----------------------cccCchHhHhhhcCCCCcEEeccccCCcC
Q 013172 247 SSIGDDA-ICSIAEGCQNLKKLHIRRCY-----------------------KIGNNGIVAVGEHCNSLTELSLRFCDRVG 302 (448)
Q Consensus 247 ~~~~~~~-~~~~~~~~~~L~~L~l~~~~-----------------------~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 302 (448)
. +.... .......+++|++|+++++. .+...........+++|++|+++++. +.
T Consensus 361 ~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~ 438 (606)
T 3t6q_A 361 D-IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL-LD 438 (606)
T ss_dssp C-CCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCC-CB
T ss_pred c-cccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCc-cC
Confidence 2 21110 00111234455555554432 12211111112334555555555532 33
Q ss_pred chHHHhhccCCCccEEeeeCccccChHHH--HHHHhhCCCCCEEeccCcCCCCHHHHHHHhcCCCCCcEEeccCCCCCCh
Q 013172 303 DEALISIGQGCSLQHLNVSGCHQIGDAGI--MAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSHCRQITD 380 (448)
Q Consensus 303 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 380 (448)
......+...++|+.|+++++ .++...+ ......+++|+.|++++| .++......+ ..+++|++|+++++ .++.
T Consensus 439 ~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~Ls~N-~l~~ 514 (606)
T 3t6q_A 439 ISSEQLFDGLPALQHLNLQGN-HFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQHAF-TSLKMMNHVDLSHN-RLTS 514 (606)
T ss_dssp TTCTTTTTTCTTCCEEECTTC-BCGGGEECSSCGGGGCTTCCEEECTTS-CCCEECTTTT-TTCTTCCEEECCSS-CCCG
T ss_pred CcCHHHHhCCCCCCEEECCCC-CCCccccccchhhccCCCccEEECCCC-ccCccChhhh-ccccCCCEEECCCC-ccCc
Confidence 223333444445666665553 2222110 011234566666666655 3332211111 34566666666663 3554
Q ss_pred HHHHHHHHcCccCceEeccCCCCCCHHHHHHHHhcCccceEEEEeeeeec
Q 013172 381 VGLSHLVKNCRMLESCHMVYCPGITAAGVATVVSGCANIKKVMVEKWKVS 430 (448)
Q Consensus 381 ~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 430 (448)
.....+. .++.| .|++++|..... .+..+..+++|+.+++++|++.
T Consensus 515 ~~~~~l~-~l~~L-~L~L~~N~l~~~--~~~~~~~l~~L~~L~l~~N~~~ 560 (606)
T 3t6q_A 515 SSIEALS-HLKGI-YLNLASNHISII--LPSLLPILSQQRTINLRQNPLD 560 (606)
T ss_dssp GGGGGGT-TCCSC-EEECCSSCCCCC--CGGGHHHHHTSSEEECTTCCEE
T ss_pred CChhHhC-ccccc-EEECcCCccccc--CHhhcccCCCCCEEeCCCCCcc
Confidence 4433332 45556 666666542211 1122334566777777766654
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.91 E-value=3.4e-26 Score=223.57 Aligned_cols=136 Identities=15% Similarity=0.111 Sum_probs=65.4
Q ss_pred cCCCCcEEeccccCCcCchHHHhhccCCCccEEeeeCccccChHHHHHHHhhCCCCCEEeccCcCCCCHHHHHHHhcCCC
Q 013172 286 HCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCP 365 (448)
Q Consensus 286 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 365 (448)
.+++|++|+++++. +.......+...++|++|+++++ .++...+......+++|+.|++++| .++...... ...++
T Consensus 422 ~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~-~~~l~ 497 (606)
T 3vq2_A 422 SLEKLLYLDISYTN-TKIDFDGIFLGLTSLNTLKMAGN-SFKDNTLSNVFANTTNLTFLDLSKC-QLEQISWGV-FDTLH 497 (606)
T ss_dssp TCTTCCEEECTTSC-CEECCTTTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTT-TTTCT
T ss_pred ccccCCEEECcCCC-CCccchhhhcCCCCCCEEECCCC-cCCCcchHHhhccCCCCCEEECCCC-cCCccChhh-hcccc
Confidence 45555555555532 33323333444455666666553 2322112222334566666666666 333222111 23456
Q ss_pred CCcEEeccCCCCCChHHHHHHHHcCccCceEeccCCCCCCHHHHHHHHhcCc-cceEEEEeeeeec
Q 013172 366 LLKDVVLSHCRQITDVGLSHLVKNCRMLESCHMVYCPGITAAGVATVVSGCA-NIKKVMVEKWKVS 430 (448)
Q Consensus 366 ~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~ 430 (448)
+|++|++++| .++......+ ..+++|+.|++++|. ++. ++..+..++ +|+.+++++|++.
T Consensus 498 ~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~l~~N~-l~~--~p~~~~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 498 RLQLLNMSHN-NLLFLDSSHY-NQLYSLSTLDCSFNR-IET--SKGILQHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp TCCEEECCSS-CCSCEEGGGT-TTCTTCCEEECTTSC-CCC--EESCGGGSCTTCCEEECCSCCCC
T ss_pred cCCEEECCCC-cCCCcCHHHc-cCCCcCCEEECCCCc-Ccc--cCHhHhhhcccCcEEEccCCCcc
Confidence 6666666664 3544322222 245666666666665 331 111134455 3666666666554
No 11
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.91 E-value=2.1e-26 Score=229.95 Aligned_cols=136 Identities=17% Similarity=0.094 Sum_probs=81.0
Q ss_pred CCCCcEEeccccCCcCchHHHhhccCCCccEEeeeCccccChHHHHHHHhhCCCCCEEeccCcCCCCHHHHHHHhcCCCC
Q 013172 287 CNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCPL 366 (448)
Q Consensus 287 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 366 (448)
+++|++|+++++ .+.......+...++|+.|+++++ .++.. +......+++|+.|++++|. +....... ...+++
T Consensus 393 ~~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~-~p~~l~~l~~L~~L~L~~n~-l~~~~p~~-~~~l~~ 467 (768)
T 3rgz_A 393 KNTLQELYLQNN-GFTGKIPPTLSNCSELVSLHLSFN-YLSGT-IPSSLGSLSKLRDLKLWLNM-LEGEIPQE-LMYVKT 467 (768)
T ss_dssp TCCCCEEECCSS-EEEEECCGGGGGCTTCCEEECCSS-EEESC-CCGGGGGCTTCCEEECCSSC-CCSCCCGG-GGGCTT
T ss_pred cCCccEEECCCC-ccccccCHHHhcCCCCCEEECcCC-cccCc-ccHHHhcCCCCCEEECCCCc-ccCcCCHH-HcCCCC
Confidence 455666666664 233334445556667788877775 33221 11223457788888888773 33221112 235788
Q ss_pred CcEEeccCCCCCChHHHHHHHHcCccCceEeccCCCCCCHHHHHHHHhcCccceEEEEeeeeecc
Q 013172 367 LKDVVLSHCRQITDVGLSHLVKNCRMLESCHMVYCPGITAAGVATVVSGCANIKKVMVEKWKVSE 431 (448)
Q Consensus 367 L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 431 (448)
|++|++++| .++......+ ..+++|+.|++++|..... ++..+..+++|+.|++++|++..
T Consensus 468 L~~L~L~~N-~l~~~~p~~l-~~l~~L~~L~L~~N~l~~~--~p~~~~~l~~L~~L~L~~N~l~~ 528 (768)
T 3rgz_A 468 LETLILDFN-DLTGEIPSGL-SNCTNLNWISLSNNRLTGE--IPKWIGRLENLAILKLSNNSFSG 528 (768)
T ss_dssp CCEEECCSS-CCCSCCCGGG-GGCTTCCEEECCSSCCCSC--CCGGGGGCTTCCEEECCSSCCEE
T ss_pred ceEEEecCC-cccCcCCHHH-hcCCCCCEEEccCCccCCc--CChHHhcCCCCCEEECCCCcccC
Confidence 888888885 3553322223 3688888898888863311 12235678889999998888763
No 12
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.91 E-value=1.8e-22 Score=190.33 Aligned_cols=346 Identities=17% Similarity=0.151 Sum_probs=232.1
Q ss_pred cCCcceeeeccccccChhHHHHHHhhhCCCccEEEeccCCccChhhHHHHHhcCCCCceeeccccccchhhHHHHhhcCC
Q 013172 28 CNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCP 107 (448)
Q Consensus 28 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 107 (448)
+++++.|++.++. +.... . ...+ ++|++|++++|. ++.... ...+++|++|++++|.+..... +..++
T Consensus 45 l~~l~~L~l~~~~-i~~l~--~-~~~l-~~L~~L~Ls~n~-l~~~~~---~~~l~~L~~L~l~~n~l~~~~~---~~~l~ 112 (466)
T 1o6v_A 45 LDQVTTLQADRLG-IKSID--G-VEYL-NNLTQINFSNNQ-LTDITP---LKNLTKLVDILMNNNQIADITP---LANLT 112 (466)
T ss_dssp HHTCCEEECCSSC-CCCCT--T-GGGC-TTCCEEECCSSC-CCCCGG---GTTCTTCCEEECCSSCCCCCGG---GTTCT
T ss_pred hccccEEecCCCC-CccCc--c-hhhh-cCCCEEECCCCc-cCCchh---hhccccCCEEECCCCccccChh---hcCCC
Confidence 4688889988773 33221 1 2233 789999999875 444332 4678899999998888765433 45688
Q ss_pred cccEEEeeccCCCcHHHHHHHhhccccccccccccccCChhHHHHHhhcCCCCCEEeecCCccCChhhHHHHHhcCCCCc
Q 013172 108 LLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELT 187 (448)
Q Consensus 108 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 187 (448)
+|++|+++++.+..... ...+++|++|+++++. +... +. ...+++|+.|++.+.. ... .. ...+++|+
T Consensus 113 ~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n~-l~~~--~~-~~~l~~L~~L~l~~~~--~~~--~~-~~~l~~L~ 180 (466)
T 1o6v_A 113 NLTGLTLFNNQITDIDP---LKNLTNLNRLELSSNT-ISDI--SA-LSGLTSLQQLSFGNQV--TDL--KP-LANLTTLE 180 (466)
T ss_dssp TCCEEECCSSCCCCCGG---GTTCTTCSEEEEEEEE-ECCC--GG-GTTCTTCSEEEEEESC--CCC--GG-GTTCTTCC
T ss_pred CCCEEECCCCCCCCChH---HcCCCCCCEEECCCCc-cCCC--hh-hccCCcccEeecCCcc--cCc--hh-hccCCCCC
Confidence 99999998887766432 3458899999998754 3221 12 4567899999987532 221 11 44688999
Q ss_pred EEEecCCCCCChhhHHHHhhcCCCcceEecccccccCchhHHHHhccCcCCceEeccCCcCcChHHHHHHHHhCCCCcEE
Q 013172 188 HLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKL 267 (448)
Q Consensus 188 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 267 (448)
.|+++++. +... .. ...+++|++|+++++. +..... ...+++|+.|+++++. +... . ....+++|+.|
T Consensus 181 ~L~l~~n~-l~~~--~~-l~~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n~-l~~~--~-~l~~l~~L~~L 248 (466)
T 1o6v_A 181 RLDISSNK-VSDI--SV-LAKLTNLESLIATNNQ-ISDITP---LGILTNLDELSLNGNQ-LKDI--G-TLASLTNLTDL 248 (466)
T ss_dssp EEECCSSC-CCCC--GG-GGGCTTCSEEECCSSC-CCCCGG---GGGCTTCCEEECCSSC-CCCC--G-GGGGCTTCSEE
T ss_pred EEECcCCc-CCCC--hh-hccCCCCCEEEecCCc-cccccc---ccccCCCCEEECCCCC-cccc--h-hhhcCCCCCEE
Confidence 99998854 3332 12 3345899999998853 333222 4568899999998864 3322 1 23458899999
Q ss_pred EccccccccCchHhHhhhcCCCCcEEeccccCCcCchHHHhhccCCCccEEeeeCccccChHHHHHHHhhCCCCCEEecc
Q 013172 268 HIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVS 347 (448)
Q Consensus 268 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 347 (448)
+++++. +..... ...+++|++|+++++. +.... .+...++|+.|+++++ .++.... ...+++|+.|+++
T Consensus 249 ~l~~n~-l~~~~~---~~~l~~L~~L~l~~n~-l~~~~--~~~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~L~ 317 (466)
T 1o6v_A 249 DLANNQ-ISNLAP---LSGLTKLTELKLGANQ-ISNIS--PLAGLTALTNLELNEN-QLEDISP---ISNLKNLTYLTLY 317 (466)
T ss_dssp ECCSSC-CCCCGG---GTTCTTCSEEECCSSC-CCCCG--GGTTCTTCSEEECCSS-CCSCCGG---GGGCTTCSEEECC
T ss_pred ECCCCc-cccchh---hhcCCCCCEEECCCCc-cCccc--cccCCCccCeEEcCCC-cccCchh---hcCCCCCCEEECc
Confidence 999864 433222 4568899999998864 44322 2666678999999885 4443221 4578999999999
Q ss_pred CcCCCCHHHHHHHhcCCCCCcEEeccCCCCCChHHHHHHHHcCccCceEeccCCCCCCHHHHHHHHhcCccceEEEEeee
Q 013172 348 VLQNLGDQAMVELGKGCPLLKDVVLSHCRQITDVGLSHLVKNCRMLESCHMVYCPGITAAGVATVVSGCANIKKVMVEKW 427 (448)
Q Consensus 348 ~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~L~l~~~ 427 (448)
+| .+++... ...+++|++|++++| .+++. ..+ ..+++|+.|++++|.. +... + +..+++|+.|++++|
T Consensus 318 ~n-~l~~~~~---~~~l~~L~~L~l~~n-~l~~~--~~l-~~l~~L~~L~l~~n~l-~~~~-~--~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 318 FN-NISDISP---VSSLTKLQRLFFYNN-KVSDV--SSL-ANLTNINWLSAGHNQI-SDLT-P--LANLTRITQLGLNDQ 385 (466)
T ss_dssp SS-CCSCCGG---GGGCTTCCEEECCSS-CCCCC--GGG-TTCTTCCEEECCSSCC-CBCG-G--GTTCTTCCEEECCCE
T ss_pred CC-cCCCchh---hccCccCCEeECCCC-ccCCc--hhh-ccCCCCCEEeCCCCcc-Cccc-h--hhcCCCCCEEeccCC
Confidence 98 4443322 346899999999986 46654 223 4689999999998864 3222 1 578899999999999
Q ss_pred eeccc
Q 013172 428 KVSER 432 (448)
Q Consensus 428 ~~~~~ 432 (448)
++...
T Consensus 386 ~~~~~ 390 (466)
T 1o6v_A 386 AWTNA 390 (466)
T ss_dssp EEECC
T ss_pred cccCC
Confidence 88763
No 13
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.90 E-value=1.5e-25 Score=218.94 Aligned_cols=187 Identities=14% Similarity=0.047 Sum_probs=110.1
Q ss_pred cCcCCceEeccCCcCcChHH-HHHHHHhCCCCcEEEccccccccCchHhHhhhcCCCCcEEeccccCCcCchHH-Hhhcc
Q 013172 234 GCKSLQALHLVDCSSIGDDA-ICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEAL-ISIGQ 311 (448)
Q Consensus 234 ~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~l~~ 311 (448)
.+++|+.|+++++. +.... .......+++|++|+++++. +.... .....+++|++|+++++. +..... ..+..
T Consensus 348 ~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~--~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~ 422 (606)
T 3vq2_A 348 ALPSLSYLDLSRNA-LSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMS--ANFMGLEELQHLDFQHST-LKRVTEFSAFLS 422 (606)
T ss_dssp CCTTCCEEECCSSC-EEEEEECCHHHHCCSCCCEEECCSCS-EEEEC--CCCTTCTTCCEEECTTSE-EESTTTTTTTTT
T ss_pred cCCCCCEEECcCCc-cCCCcchhhhhccCCcccEeECCCCc-cccch--hhccCCCCCCeeECCCCc-cCCccChhhhhc
Confidence 45666666666542 22110 01223446777777777653 22211 223456777777777753 322222 34556
Q ss_pred CCCccEEeeeCccccChHHHHHHHhhCCCCCEEeccCcCCCCHHHHHHHhcCCCCCcEEeccCCCCCChHHHHHHHHcCc
Q 013172 312 GCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSHCRQITDVGLSHLVKNCR 391 (448)
Q Consensus 312 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~ 391 (448)
.++|+.|+++++. ++.. .......+++|++|++++| .+++..+......+++|++|++++| .++......+ ..++
T Consensus 423 l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~ 497 (606)
T 3vq2_A 423 LEKLLYLDISYTN-TKID-FDGIFLGLTSLNTLKMAGN-SFKDNTLSNVFANTTNLTFLDLSKC-QLEQISWGVF-DTLH 497 (606)
T ss_dssp CTTCCEEECTTSC-CEEC-CTTTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTT-TTCT
T ss_pred cccCCEEECcCCC-CCcc-chhhhcCCCCCCEEECCCC-cCCCcchHHhhccCCCCCEEECCCC-cCCccChhhh-cccc
Confidence 6678888888753 3221 1122346788888888887 4443222223346789999999885 4665443333 3688
Q ss_pred cCceEeccCCCCCCHHHHHHHHhcCccceEEEEeeeeeccc
Q 013172 392 MLESCHMVYCPGITAAGVATVVSGCANIKKVMVEKWKVSER 432 (448)
Q Consensus 392 ~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 432 (448)
+|+.|++++|..... .+..+..+++|+.|++++|++..-
T Consensus 498 ~L~~L~Ls~N~l~~~--~~~~~~~l~~L~~L~l~~N~l~~~ 536 (606)
T 3vq2_A 498 RLQLLNMSHNNLLFL--DSSHYNQLYSLSTLDCSFNRIETS 536 (606)
T ss_dssp TCCEEECCSSCCSCE--EGGGTTTCTTCCEEECTTSCCCCE
T ss_pred cCCEEECCCCcCCCc--CHHHccCCCcCCEEECCCCcCccc
Confidence 999999998863321 123356789999999999987643
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.90 E-value=3e-24 Score=207.28 Aligned_cols=178 Identities=19% Similarity=0.215 Sum_probs=105.4
Q ss_pred eeEEEeeeeccccccccccchhccccCCcceeeeccccccChhHHHHHHhhhCCCccEEEeccCCccChhhHHHHHhcCC
Q 013172 3 KLVLNFGFCKGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCK 82 (448)
Q Consensus 3 ~~~L~~s~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 82 (448)
+.+|+++.|.+..+....+ ..+++|++|+++++ .+.......+ ..+ ++|++|++++|. ++......+ ..++
T Consensus 28 L~~L~Ls~n~l~~~~~~~~----~~l~~L~~L~Ls~n-~i~~~~~~~~-~~l-~~L~~L~Ls~n~-l~~~~~~~~-~~l~ 98 (549)
T 2z81_A 28 MKSLDLSFNKITYIGHGDL----RACANLQVLILKSS-RINTIEGDAF-YSL-GSLEHLDLSDNH-LSSLSSSWF-GPLS 98 (549)
T ss_dssp CCEEECCSSCCCEECSSTT----SSCTTCCEEECTTS-CCCEECTTTT-TTC-TTCCEEECTTSC-CCSCCHHHH-TTCT
T ss_pred ccEEECcCCccCccChhhh----hcCCcccEEECCCC-CcCccChhhc-ccc-ccCCEEECCCCc-cCccCHHHh-ccCC
Confidence 4678898887776654433 34588999999988 4443222222 223 689999999875 555444434 5688
Q ss_pred CCceeeccccccchhhHHHHhhcCCcccEEEeeccC-CCcHHHHHHHhhccccccccccccccCChhHHHHHhhcCCCCC
Q 013172 83 SLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCIN-VTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLK 161 (448)
Q Consensus 83 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 161 (448)
+|++|++++|.+...+....+..+++|++|+++++. +.......+ ..+++|++|+++++. +... .+.....+++|+
T Consensus 99 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-~~l~~L~~L~L~~n~-l~~~-~~~~l~~l~~L~ 175 (549)
T 2z81_A 99 SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF-AGLTSLNELEIKALS-LRNY-QSQSLKSIRDIH 175 (549)
T ss_dssp TCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTT-TTCCEEEEEEEEETT-CCEE-CTTTTTTCSEEE
T ss_pred CCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhh-hcccccCeeeccCCc-cccc-ChhhhhccccCc
Confidence 999999998887654333344567888888888776 333222223 337788888887643 2221 111223455666
Q ss_pred EEeecCCccCChhhHHHHHhcCCCCcEEEecCC
Q 013172 162 NLTLSDCYFLSDMGLEAIATGCKELTHLEINGC 194 (448)
Q Consensus 162 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 194 (448)
+|+++++.. ... ...+...+++|+.|+++++
T Consensus 176 ~L~l~~n~~-~~~-~~~~~~~l~~L~~L~L~~n 206 (549)
T 2z81_A 176 HLTLHLSES-AFL-LEIFADILSSVRYLELRDT 206 (549)
T ss_dssp EEEEECSBS-TTH-HHHHHHSTTTBSEEEEESC
T ss_pred eEecccCcc-ccc-chhhHhhcccccEEEccCC
Confidence 666665542 111 1222334566666666553
No 15
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=3e-22 Score=181.58 Aligned_cols=303 Identities=16% Similarity=0.130 Sum_probs=154.7
Q ss_pred CCccEEEeccCCccChhhHHHHHhcCCCCceeeccccccchhhHHHHhhcCCcccEEEeeccCCCcHHHHHHHhhccccc
Q 013172 56 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLE 135 (448)
Q Consensus 56 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 135 (448)
++|++|+++++. +.... . ...+++|++|++++|.+..... +..+++|++|+++++.+.+.. . ...+++|+
T Consensus 44 ~~L~~L~l~~~~-i~~~~--~-~~~~~~L~~L~l~~n~i~~~~~---~~~l~~L~~L~L~~n~i~~~~--~-~~~l~~L~ 113 (347)
T 4fmz_A 44 ESITKLVVAGEK-VASIQ--G-IEYLTNLEYLNLNGNQITDISP---LSNLVKLTNLYIGTNKITDIS--A-LQNLTNLR 113 (347)
T ss_dssp TTCSEEECCSSC-CCCCT--T-GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCCG--G-GTTCTTCS
T ss_pred ccccEEEEeCCc-cccch--h-hhhcCCccEEEccCCccccchh---hhcCCcCCEEEccCCcccCch--H-HcCCCcCC
Confidence 567777777654 32221 1 2456777777777666654322 345666777777666554421 1 12244555
Q ss_pred cccccccccCChhHHHHHhhcCCCCCEEeecCCccCChhhHHHHHhcCCCCcEEEecCCCCCChhhHHHHhhcCCCcceE
Q 013172 136 LLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTEL 215 (448)
Q Consensus 136 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L 215 (448)
+|+++ ++. +..... ...+++|+.|++.++....... . ...+++|+.|
T Consensus 114 ~L~l~--------------------------~n~-i~~~~~---~~~l~~L~~L~l~~n~~~~~~~--~-~~~l~~L~~L 160 (347)
T 4fmz_A 114 ELYLN--------------------------EDN-ISDISP---LANLTKMYSLNLGANHNLSDLS--P-LSNMTGLNYL 160 (347)
T ss_dssp EEECT--------------------------TSC-CCCCGG---GTTCTTCCEEECTTCTTCCCCG--G-GTTCTTCCEE
T ss_pred EEECc--------------------------CCc-ccCchh---hccCCceeEEECCCCCCccccc--c-hhhCCCCcEE
Confidence 55554 443 111110 2234455555554433222211 1 1223555555
Q ss_pred ecccccccCchhHHHHhccCcCCceEeccCCcCcChHHHHHHHHhCCCCcEEEccccccccCchHhHhhhcCCCCcEEec
Q 013172 216 ALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSL 295 (448)
Q Consensus 216 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 295 (448)
++.++. +..... ...+++|+.|+++++. +..... ...+++|+.|++.++. +..... ...+++|++|++
T Consensus 161 ~l~~~~-~~~~~~---~~~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n~-l~~~~~---~~~~~~L~~L~l 228 (347)
T 4fmz_A 161 TVTESK-VKDVTP---IANLTDLYSLSLNYNQ-IEDISP---LASLTSLHYFTAYVNQ-ITDITP---VANMTRLNSLKI 228 (347)
T ss_dssp ECCSSC-CCCCGG---GGGCTTCSEEECTTSC-CCCCGG---GGGCTTCCEEECCSSC-CCCCGG---GGGCTTCCEEEC
T ss_pred EecCCC-cCCchh---hccCCCCCEEEccCCc-cccccc---ccCCCccceeecccCC-CCCCch---hhcCCcCCEEEc
Confidence 555432 211111 2345556666655542 221111 2345666666666542 322211 234666666666
Q ss_pred cccCCcCchHHHhhccCCCccEEeeeCccccChHHHHHHHhhCCCCCEEeccCcCCCCHHHHHHHhcCCCCCcEEeccCC
Q 013172 296 RFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSHC 375 (448)
Q Consensus 296 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c 375 (448)
+++. +.+... +...++|+.|+++++ .++.. .....+++|+.|++++| .+++. .....+++|++|++++|
T Consensus 229 ~~n~-l~~~~~--~~~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~L~~n 297 (347)
T 4fmz_A 229 GNNK-ITDLSP--LANLSQLTWLEIGTN-QISDI---NAVKDLTKLKMLNVGSN-QISDI---SVLNNLSQLNSLFLNNN 297 (347)
T ss_dssp CSSC-CCCCGG--GTTCTTCCEEECCSS-CCCCC---GGGTTCTTCCEEECCSS-CCCCC---GGGGGCTTCSEEECCSS
T ss_pred cCCc-cCCCcc--hhcCCCCCEEECCCC-ccCCC---hhHhcCCCcCEEEccCC-ccCCC---hhhcCCCCCCEEECcCC
Confidence 6643 332221 445556777777664 33332 12345677888888777 44433 12345788888888875
Q ss_pred CCCChHHHHHHHHcCccCceEeccCCCCCCHHHHHHHHhcCccceEEEEeeeeec
Q 013172 376 RQITDVGLSHLVKNCRMLESCHMVYCPGITAAGVATVVSGCANIKKVMVEKWKVS 430 (448)
Q Consensus 376 ~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 430 (448)
.++......+. .+++|+.|++++|+...... +..+++|+.|++++|+++
T Consensus 298 -~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~----~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 298 -QLGNEDMEVIG-GLTNLTTLFLSQNHITDIRP----LASLSKMDSADFANQVIK 346 (347)
T ss_dssp -CCCGGGHHHHH-TCTTCSEEECCSSSCCCCGG----GGGCTTCSEESSSCC---
T ss_pred -cCCCcChhHhh-ccccCCEEEccCCccccccC----hhhhhccceeehhhhccc
Confidence 46666555554 57888888888876332221 457788888888888765
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.90 E-value=1.2e-23 Score=203.01 Aligned_cols=394 Identities=14% Similarity=0.102 Sum_probs=213.0
Q ss_pred eeEEEeeeeccccccccccchhccccCCcceeeeccccccChhHHHHHHhhhCCCccEEEeccCCccChhhHHHHHhcCC
Q 013172 3 KLVLNFGFCKGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCK 82 (448)
Q Consensus 3 ~~~L~~s~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 82 (448)
..+|+++.|.+..+....+ ..+++|++|+++++ .+.......+ ..+ ++|++|++++|. ++..........++
T Consensus 52 L~~L~Ls~n~i~~~~~~~~----~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l-~~L~~L~Ls~n~-l~~~~~~~~~~~l~ 123 (549)
T 2z81_A 52 LQVLILKSSRINTIEGDAF----YSLGSLEHLDLSDN-HLSSLSSSWF-GPL-SSLKYLNLMGNP-YQTLGVTSLFPNLT 123 (549)
T ss_dssp CCEEECTTSCCCEECTTTT----TTCTTCCEEECTTS-CCCSCCHHHH-TTC-TTCCEEECTTCC-CSSSCSSCSCTTCT
T ss_pred ccEEECCCCCcCccChhhc----cccccCCEEECCCC-ccCccCHHHh-ccC-CCCcEEECCCCc-ccccchhhhhhccC
Confidence 4689998887776654444 34589999999998 4554433333 334 789999999985 44322222345689
Q ss_pred CCceeeccccccchhhHHHHhhcCCcccEEEeeccCCCcHHHHHHHhhccccccccccccccCChhHHHHHhhcCCCCCE
Q 013172 83 SLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKN 162 (448)
Q Consensus 83 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 162 (448)
+|++|++++|..........+..+++|++|+++++.+.......+.. +++|++|++++.. .. .....+...+++|+.
T Consensus 124 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~-l~~L~~L~l~~n~-~~-~~~~~~~~~l~~L~~ 200 (549)
T 2z81_A 124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKS-IRDIHHLTLHLSE-SA-FLLEIFADILSSVRY 200 (549)
T ss_dssp TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTT-CSEEEEEEEECSB-ST-THHHHHHHSTTTBSE
T ss_pred CccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhc-cccCceEecccCc-cc-ccchhhHhhcccccE
Confidence 99999999886322222223345888999999888776544434433 6777777776543 21 112223345677777
Q ss_pred EeecCCccCC--------------------------hhhHHHH---HhcCCCCcEEEecCCCCCChh-------------
Q 013172 163 LTLSDCYFLS--------------------------DMGLEAI---ATGCKELTHLEINGCHNIGTM------------- 200 (448)
Q Consensus 163 L~l~~~~~~~--------------------------~~~~~~~---~~~~~~L~~L~l~~~~~~~~~------------- 200 (448)
|+++++.... +.....+ ...+++|+.+++.+|......
T Consensus 201 L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l 280 (549)
T 2z81_A 201 LELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSEL 280 (549)
T ss_dssp EEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCC
T ss_pred EEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhh
Confidence 7777664211 1111111 122334444444433210000
Q ss_pred --------------------hHHHHhhcCCCcceEecccccccCchhHHHHhccCcCCceEeccCCcCcChHHHHH--HH
Q 013172 201 --------------------GLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICS--IA 258 (448)
Q Consensus 201 --------------------~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~--~~ 258 (448)
.+..+....++|+.|+++++ .+...+ ..+...+++|+.|+++++ .+....... ..
T Consensus 281 ~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n-~l~~ip-~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~ 357 (549)
T 2z81_A 281 GKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS-KVFLVP-CSFSQHLKSLEFLDLSEN-LMVEEYLKNSACK 357 (549)
T ss_dssp TTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESS-CCCCCC-HHHHHHCTTCCEEECCSS-CCCHHHHHHHTCT
T ss_pred cccccccccccccchhhhcccchhhhhhcccceEEEeccC-ccccCC-HHHHhcCccccEEEccCC-ccccccccchhhh
Confidence 00011111244555555442 222111 122234667777777764 344322211 12
Q ss_pred HhCCCCcEEEccccccccCch-HhHhhhcCCCCcEEeccccCCcCchHHHhhccCCCccEEeeeCccccChHHHHHHHhh
Q 013172 259 EGCQNLKKLHIRRCYKIGNNG-IVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKG 337 (448)
Q Consensus 259 ~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 337 (448)
..+++|+.|+++++. ++... .......+++|++|+++++ .+.. ....+...++|++|+++++ .++... . ..
T Consensus 358 ~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~-lp~~~~~~~~L~~L~Ls~N-~l~~l~--~--~~ 429 (549)
T 2z81_A 358 GAWPSLQTLVLSQNH-LRSMQKTGEILLTLKNLTSLDISRN-TFHP-MPDSCQWPEKMRFLNLSST-GIRVVK--T--CI 429 (549)
T ss_dssp TSSTTCCEEECTTSC-CCCHHHHHHHGGGCTTCCEEECTTC-CCCC-CCSCCCCCTTCCEEECTTS-CCSCCC--T--TS
T ss_pred hccccCcEEEccCCc-ccccccchhhhhcCCCCCEEECCCC-CCcc-CChhhcccccccEEECCCC-Cccccc--c--hh
Confidence 346677777777653 33322 1123445677777777765 3331 1122334456777777764 333210 0 01
Q ss_pred CCCCCEEeccCcCCCCHHHHHHHhcCCCCCcEEeccCCCCCChHHHHHHHHcCccCceEeccCCCCCCHHHHHHHHhcCc
Q 013172 338 CPELNYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSHCRQITDVGLSHLVKNCRMLESCHMVYCPGITAAGVATVVSGCA 417 (448)
Q Consensus 338 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~ 417 (448)
.++|+.|++++| .++.. ...+++|++|+++++ +++... .. ..+++|+.|++++|. ++.. .+..+..++
T Consensus 430 ~~~L~~L~Ls~N-~l~~~-----~~~l~~L~~L~Ls~N-~l~~ip--~~-~~l~~L~~L~Ls~N~-l~~~-~~~~~~~l~ 497 (549)
T 2z81_A 430 PQTLEVLDVSNN-NLDSF-----SLFLPRLQELYISRN-KLKTLP--DA-SLFPVLLVMKISRNQ-LKSV-PDGIFDRLT 497 (549)
T ss_dssp CTTCSEEECCSS-CCSCC-----CCCCTTCCEEECCSS-CCSSCC--CG-GGCTTCCEEECCSSC-CCCC-CTTGGGGCT
T ss_pred cCCceEEECCCC-Chhhh-----cccCChhcEEECCCC-ccCcCC--Cc-ccCccCCEEecCCCc-cCCc-CHHHHhcCc
Confidence 256777777777 44332 245788888888874 465322 22 247788888888875 3321 112345778
Q ss_pred cceEEEEeeeeec
Q 013172 418 NIKKVMVEKWKVS 430 (448)
Q Consensus 418 ~L~~L~l~~~~~~ 430 (448)
+|+.|++++|++.
T Consensus 498 ~L~~L~l~~N~~~ 510 (549)
T 2z81_A 498 SLQKIWLHTNPWD 510 (549)
T ss_dssp TCCEEECCSSCBC
T ss_pred ccCEEEecCCCcc
Confidence 8888888888764
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.90 E-value=2.2e-24 Score=206.65 Aligned_cols=120 Identities=15% Similarity=0.096 Sum_probs=58.1
Q ss_pred EEEeeeeccccccccccchhccccCCcceeeeccccccChhHHHHHHhhhCCCccEEEeccCCccChhhHHHHHhcCCCC
Q 013172 5 VLNFGFCKGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSL 84 (448)
Q Consensus 5 ~L~~s~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 84 (448)
+||++.|.+..++.. +. ++|++|+++++ .+.......+ ..+ ++|++|++++|. ++......+ ..+++|
T Consensus 4 ~l~ls~n~l~~ip~~----~~---~~L~~L~Ls~n-~i~~~~~~~~-~~l-~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L 71 (520)
T 2z7x_B 4 LVDRSKNGLIHVPKD----LS---QKTTILNISQN-YISELWTSDI-LSL-SKLRILIISHNR-IQYLDISVF-KFNQEL 71 (520)
T ss_dssp EEECTTSCCSSCCCS----CC---TTCSEEECCSS-CCCCCCHHHH-TTC-TTCCEEECCSSC-CCEEEGGGG-TTCTTC
T ss_pred eEecCCCCccccccc----cc---ccccEEECCCC-cccccChhhc-ccc-ccccEEecCCCc-cCCcChHHh-hcccCC
Confidence 566666655554422 11 56666666666 3333222222 222 566666666653 333222222 345666
Q ss_pred ceeeccccccchhhHHHHhhcCCcccEEEeeccCCCcHHH-HHHHhhccccccccccc
Q 013172 85 ETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEAL-VAVGNQCLSLELLALYS 141 (448)
Q Consensus 85 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~ 141 (448)
++|++++|.++.. ... .+++|++|++++|.+..... ..+ ..+++|++|++++
T Consensus 72 ~~L~Ls~N~l~~l--p~~--~l~~L~~L~L~~N~l~~~~~p~~~-~~l~~L~~L~L~~ 124 (520)
T 2z7x_B 72 EYLDLSHNKLVKI--SCH--PTVNLKHLDLSFNAFDALPICKEF-GNMSQLKFLGLST 124 (520)
T ss_dssp CEEECCSSCCCEE--ECC--CCCCCSEEECCSSCCSSCCCCGGG-GGCTTCCEEEEEE
T ss_pred CEEecCCCceeec--Ccc--ccCCccEEeccCCccccccchhhh-ccCCcceEEEecC
Confidence 6666666655421 111 35566666666555543211 222 2255666666655
No 18
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.90 E-value=6.1e-22 Score=186.64 Aligned_cols=339 Identities=20% Similarity=0.131 Sum_probs=239.2
Q ss_pred eeEEEeeeeccccccccccchhccccCCcceeeeccccccChhHHHHHHhhhCCCccEEEeccCCccChhhHHHHHhcCC
Q 013172 3 KLVLNFGFCKGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCK 82 (448)
Q Consensus 3 ~~~L~~s~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 82 (448)
+..|+++.|.+..++ .+ ..+++|++|+++++ .+..... +..+ ++|++|++++|. +..... ...++
T Consensus 48 l~~L~l~~~~i~~l~-----~~-~~l~~L~~L~Ls~n-~l~~~~~---~~~l-~~L~~L~l~~n~-l~~~~~---~~~l~ 112 (466)
T 1o6v_A 48 VTTLQADRLGIKSID-----GV-EYLNNLTQINFSNN-QLTDITP---LKNL-TKLVDILMNNNQ-IADITP---LANLT 112 (466)
T ss_dssp CCEEECCSSCCCCCT-----TG-GGCTTCCEEECCSS-CCCCCGG---GTTC-TTCCEEECCSSC-CCCCGG---GTTCT
T ss_pred ccEEecCCCCCccCc-----ch-hhhcCCCEEECCCC-ccCCchh---hhcc-ccCCEEECCCCc-cccChh---hcCCC
Confidence 356777776555443 23 45699999999998 4554332 3334 799999999986 444332 46799
Q ss_pred CCceeeccccccchhhHHHHhhcCCcccEEEeeccCCCcHHHHHHHhhccccccccccccccCChhHHHHHhhcCCCCCE
Q 013172 83 SLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKN 162 (448)
Q Consensus 83 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 162 (448)
+|++|++++|.+..... +..+++|++|+++++.+.... . ...+++|+.|++.+. +... .. ...+++|+.
T Consensus 113 ~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~--~-~~~l~~L~~L~l~~~--~~~~--~~-~~~l~~L~~ 181 (466)
T 1o6v_A 113 NLTGLTLFNNQITDIDP---LKNLTNLNRLELSSNTISDIS--A-LSGLTSLQQLSFGNQ--VTDL--KP-LANLTTLER 181 (466)
T ss_dssp TCCEEECCSSCCCCCGG---GTTCTTCSEEEEEEEEECCCG--G-GTTCTTCSEEEEEES--CCCC--GG-GTTCTTCCE
T ss_pred CCCEEECCCCCCCCChH---HcCCCCCCEEECCCCccCCCh--h-hccCCcccEeecCCc--ccCc--hh-hccCCCCCE
Confidence 99999999998876432 456899999999988877532 2 344899999999742 2221 11 457899999
Q ss_pred EeecCCccCChhhHHHHHhcCCCCcEEEecCCCCCChhhHHHHhhcCCCcceEecccccccCchhHHHHhccCcCCceEe
Q 013172 163 LTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALH 242 (448)
Q Consensus 163 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 242 (448)
|+++++. +.... ....+++|+.|++.++. +..... ...+++|++|+++++. +.... ....+++|+.|+
T Consensus 182 L~l~~n~-l~~~~---~l~~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n~-l~~~~---~l~~l~~L~~L~ 249 (466)
T 1o6v_A 182 LDISSNK-VSDIS---VLAKLTNLESLIATNNQ-ISDITP---LGILTNLDELSLNGNQ-LKDIG---TLASLTNLTDLD 249 (466)
T ss_dssp EECCSSC-CCCCG---GGGGCTTCSEEECCSSC-CCCCGG---GGGCTTCCEEECCSSC-CCCCG---GGGGCTTCSEEE
T ss_pred EECcCCc-CCCCh---hhccCCCCCEEEecCCc-cccccc---ccccCCCCEEECCCCC-cccch---hhhcCCCCCEEE
Confidence 9999987 33321 14568999999999864 333221 2346999999999853 44322 345789999999
Q ss_pred ccCCcCcChHHHHHHHHhCCCCcEEEccccccccCchHhHhhhcCCCCcEEeccccCCcCchHHHhhccCCCccEEeeeC
Q 013172 243 LVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSG 322 (448)
Q Consensus 243 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 322 (448)
++++. +.... . ...+++|+.|+++++. ++.... ...+++|++|+++++. +.+. ..+..+++|+.|++++
T Consensus 250 l~~n~-l~~~~--~-~~~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~L~~n~-l~~~--~~~~~l~~L~~L~L~~ 318 (466)
T 1o6v_A 250 LANNQ-ISNLA--P-LSGLTKLTELKLGANQ-ISNISP---LAGLTALTNLELNENQ-LEDI--SPISNLKNLTYLTLYF 318 (466)
T ss_dssp CCSSC-CCCCG--G-GTTCTTCSEEECCSSC-CCCCGG---GTTCTTCSEEECCSSC-CSCC--GGGGGCTTCSEEECCS
T ss_pred CCCCc-cccch--h-hhcCCCCCEEECCCCc-cCcccc---ccCCCccCeEEcCCCc-ccCc--hhhcCCCCCCEEECcC
Confidence 99964 33221 1 4568999999999864 443322 4468999999999964 4432 3366778899999999
Q ss_pred ccccChHHHHHHHhhCCCCCEEeccCcCCCCHHHHHHHhcCCCCCcEEeccCCCCCChHHHHHHHHcCccCceEeccCCC
Q 013172 323 CHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSHCRQITDVGLSHLVKNCRMLESCHMVYCP 402 (448)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~ 402 (448)
+ .+++... ...+++|+.|++++| .+++. . ....+++|++|++++| .+++... ...+++|+.|++++|+
T Consensus 319 n-~l~~~~~---~~~l~~L~~L~l~~n-~l~~~--~-~l~~l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 319 N-NISDISP---VSSLTKLQRLFFYNN-KVSDV--S-SLANLTNINWLSAGHN-QISDLTP---LANLTRITQLGLNDQA 386 (466)
T ss_dssp S-CCSCCGG---GGGCTTCCEEECCSS-CCCCC--G-GGTTCTTCCEEECCSS-CCCBCGG---GTTCTTCCEEECCCEE
T ss_pred C-cCCCchh---hccCccCCEeECCCC-ccCCc--h-hhccCCCCCEEeCCCC-ccCccch---hhcCCCCCEEeccCCc
Confidence 6 4544322 457899999999998 45543 2 2356999999999996 4665443 3579999999999886
No 19
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.90 E-value=2.3e-25 Score=216.23 Aligned_cols=207 Identities=14% Similarity=0.105 Sum_probs=119.7
Q ss_pred CCCcceEecccccccCchhHHHHhccCcCCceEeccCCcCcChHH-HHHHHHhCCCCcEEEccccccccCchHhHhhhcC
Q 013172 209 CRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDA-ICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHC 287 (448)
Q Consensus 209 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 287 (448)
+++|+.|++.++........ ..+++|+.|+++++. +.... .......+++|+.|+++++. +...... ...+
T Consensus 324 l~~L~~L~l~~n~~~~~~~~----~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~--~~~l 395 (570)
T 2z63_A 324 LKSLKRLTFTSNKGGNAFSE----VDLPSLEFLDLSRNG-LSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSN--FLGL 395 (570)
T ss_dssp CSSCCEEEEESCBSCCBCCC----CBCTTCCEEECCSSC-CBEEEEEEHHHHTCSCCCEEECCSCS-EEEEEEE--EETC
T ss_pred ccccCEEeCcCCcccccccc----ccCCCCCEEeCcCCc-cCccccccccccccCccCEEECCCCc-ccccccc--cccc
Confidence 35555555555322111111 456777777777643 22111 01223447788888887753 2221111 3457
Q ss_pred CCCcEEeccccCCcCchH-HHhhccCCCccEEeeeCccccChHHHHHHHhhCCCCCEEeccCcCCCCHHHHHHHhcCCCC
Q 013172 288 NSLTELSLRFCDRVGDEA-LISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCPL 366 (448)
Q Consensus 288 ~~L~~L~l~~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 366 (448)
++|++|+++++. +.... ...+...++|++|+++++. +... .......+++|+.|++++| .+.+..+......+++
T Consensus 396 ~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n-~l~~~~~p~~~~~l~~ 471 (570)
T 2z63_A 396 EQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTH-TRVA-FNGIFNGLSSLEVLKMAGN-SFQENFLPDIFTELRN 471 (570)
T ss_dssp TTCCEEECTTSE-EESCTTSCTTTTCTTCCEEECTTSC-CEEC-CTTTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTT
T ss_pred CCCCEEEccCCc-cccccchhhhhcCCCCCEEeCcCCc-cccc-chhhhhcCCcCcEEECcCC-cCccccchhhhhcccC
Confidence 888888887753 32221 1345556678888888753 3221 1223346788888888887 3432222233356789
Q ss_pred CcEEeccCCCCCChHHHHHHHHcCccCceEeccCCCCCCHHHHHHHHhcCccceEEEEeeeeecc
Q 013172 367 LKDVVLSHCRQITDVGLSHLVKNCRMLESCHMVYCPGITAAGVATVVSGCANIKKVMVEKWKVSE 431 (448)
Q Consensus 367 L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 431 (448)
|++|++++| .++......+ ..+++|+.|++++|. ++.. .+..+..+++|+.|++++|++..
T Consensus 472 L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 472 LTFLDLSQC-QLEQLSPTAF-NSLSSLQVLNMASNQ-LKSV-PDGIFDRLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp CCEEECTTS-CCCEECTTTT-TTCTTCCEEECCSSC-CSCC-CTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCEEECCCC-ccccCChhhh-hcccCCCEEeCCCCc-CCCC-CHHHhhcccCCcEEEecCCcccC
Confidence 999999885 4665433333 358889999998885 3321 11234678899999999888764
No 20
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.89 E-value=2.4e-21 Score=175.60 Aligned_cols=303 Identities=20% Similarity=0.159 Sum_probs=169.4
Q ss_pred ccCCcceeeeccccccChhHHHHHHhhhCCCccEEEeccCCccChhhHHHHHhcCCCCceeeccccccchhhHHHHhhcC
Q 013172 27 VCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGC 106 (448)
Q Consensus 27 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 106 (448)
.+++|++|+++++. +.... . +..+ ++|++|++++|. ++.... ...+++|++|++++|.+... .. +..+
T Consensus 42 ~l~~L~~L~l~~~~-i~~~~--~-~~~~-~~L~~L~l~~n~-i~~~~~---~~~l~~L~~L~L~~n~i~~~--~~-~~~l 109 (347)
T 4fmz_A 42 ELESITKLVVAGEK-VASIQ--G-IEYL-TNLEYLNLNGNQ-ITDISP---LSNLVKLTNLYIGTNKITDI--SA-LQNL 109 (347)
T ss_dssp HHTTCSEEECCSSC-CCCCT--T-GGGC-TTCCEEECCSSC-CCCCGG---GTTCTTCCEEECCSSCCCCC--GG-GTTC
T ss_pred hcccccEEEEeCCc-cccch--h-hhhc-CCccEEEccCCc-cccchh---hhcCCcCCEEEccCCcccCc--hH-HcCC
Confidence 45899999999884 44322 1 2333 899999999985 554433 46799999999999988763 23 4568
Q ss_pred CcccEEEeeccCCCcHHHHHHHhhccccccccccccccCChhHHHHHhhcCCCCCEEeecCCccCChhhHHHHHhcCCCC
Q 013172 107 PLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKEL 186 (448)
Q Consensus 107 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 186 (448)
++|++|+++++.+..... ...+++|+.|+++++....... . ...+++|+.|+++++....... ...+++|
T Consensus 110 ~~L~~L~l~~n~i~~~~~---~~~l~~L~~L~l~~n~~~~~~~--~-~~~l~~L~~L~l~~~~~~~~~~----~~~l~~L 179 (347)
T 4fmz_A 110 TNLRELYLNEDNISDISP---LANLTKMYSLNLGANHNLSDLS--P-LSNMTGLNYLTVTESKVKDVTP----IANLTDL 179 (347)
T ss_dssp TTCSEEECTTSCCCCCGG---GTTCTTCCEEECTTCTTCCCCG--G-GTTCTTCCEEECCSSCCCCCGG----GGGCTTC
T ss_pred CcCCEEECcCCcccCchh---hccCCceeEEECCCCCCccccc--c-hhhCCCCcEEEecCCCcCCchh----hccCCCC
Confidence 999999999888765332 3346777777777654332211 1 3345666666666654221111 2345566
Q ss_pred cEEEecCCCCCChhhHHHHhhcCCCcceEecccccccCchhHHHHhccCcCCceEeccCCcCcChHHHHHHHHhCCCCcE
Q 013172 187 THLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKK 266 (448)
Q Consensus 187 ~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 266 (448)
+.|++.++. +..... ...+++|+.+++.++ .+..... . ..+++|++
T Consensus 180 ~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n-~l~~~~~---~--------------------------~~~~~L~~ 225 (347)
T 4fmz_A 180 YSLSLNYNQ-IEDISP---LASLTSLHYFTAYVN-QITDITP---V--------------------------ANMTRLNS 225 (347)
T ss_dssp SEEECTTSC-CCCCGG---GGGCTTCCEEECCSS-CCCCCGG---G--------------------------GGCTTCCE
T ss_pred CEEEccCCc-cccccc---ccCCCccceeecccC-CCCCCch---h--------------------------hcCCcCCE
Confidence 666665532 221111 122345555555442 1221111 2 23455555
Q ss_pred EEccccccccCchHhHhhhcCCCCcEEeccccCCcCchHHHhhccCCCccEEeeeCccccChHHHHHHHhhCCCCCEEec
Q 013172 267 LHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDV 346 (448)
Q Consensus 267 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 346 (448)
|+++++. ++.... ...+++|++|+++++. +.+. ..+...++|+.|+++++ .++.. .....+++|+.|++
T Consensus 226 L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n~-l~~~--~~~~~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~L 294 (347)
T 4fmz_A 226 LKIGNNK-ITDLSP---LANLSQLTWLEIGTNQ-ISDI--NAVKDLTKLKMLNVGSN-QISDI---SVLNNLSQLNSLFL 294 (347)
T ss_dssp EECCSSC-CCCCGG---GTTCTTCCEEECCSSC-CCCC--GGGTTCTTCCEEECCSS-CCCCC---GGGGGCTTCSEEEC
T ss_pred EEccCCc-cCCCcc---hhcCCCCCEEECCCCc-cCCC--hhHhcCCCcCEEEccCC-ccCCC---hhhcCCCCCCEEEC
Confidence 5555532 222111 2345566666665542 3321 33444455666666664 33332 12345677777777
Q ss_pred cCcCCCCHHHHHHHhcCCCCCcEEeccCCCCCChHHHHHHHHcCccCceEeccCCC
Q 013172 347 SVLQNLGDQAMVELGKGCPLLKDVVLSHCRQITDVGLSHLVKNCRMLESCHMVYCP 402 (448)
Q Consensus 347 ~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~ 402 (448)
++| .++......+ ..+++|++|++++|. ++.... ...+++|+.|++++|+
T Consensus 295 ~~n-~l~~~~~~~l-~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 295 NNN-QLGNEDMEVI-GGLTNLTTLFLSQNH-ITDIRP---LASLSKMDSADFANQV 344 (347)
T ss_dssp CSS-CCCGGGHHHH-HTCTTCSEEECCSSS-CCCCGG---GGGCTTCSEESSSCC-
T ss_pred cCC-cCCCcChhHh-hccccCCEEEccCCc-cccccC---hhhhhccceeehhhhc
Confidence 777 4554444433 346777777777754 554332 3357777777777765
No 21
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.89 E-value=1.5e-24 Score=214.73 Aligned_cols=155 Identities=19% Similarity=0.125 Sum_probs=84.3
Q ss_pred eeEEEeeeeccccccccccchhccccCCcceeeeccccccChhHHHHHHhhhCCCccEEEeccCCccChhhHHHHHhcCC
Q 013172 3 KLVLNFGFCKGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCK 82 (448)
Q Consensus 3 ~~~L~~s~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 82 (448)
+.+|+++.|.+..+....+ ..+++|++|+++++ .+.......+ ..+ ++|++|++++|. ++...... ...++
T Consensus 27 l~~L~Ls~n~l~~~~~~~~----~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l-~~L~~L~L~~n~-l~~l~~~~-~~~l~ 97 (680)
T 1ziw_A 27 ITVLNLTHNQLRRLPAANF----TRYSQLTSLDVGFN-TISKLEPELC-QKL-PMLKVLNLQHNE-LSQLSDKT-FAFCT 97 (680)
T ss_dssp CSEEECCSSCCCCCCGGGG----GGGTTCSEEECCSS-CCCCCCTTHH-HHC-TTCCEEECCSSC-CCCCCTTT-TTTCT
T ss_pred CcEEECCCCCCCCcCHHHH----hCCCcCcEEECCCC-ccCccCHHHH-hcc-cCcCEEECCCCc-cCccChhh-hccCC
Confidence 4578888877666554433 33478888888877 3443222222 223 678888888764 44322222 24577
Q ss_pred CCceeeccccccchhhHHHHhhcCCcccEEEeeccCCCcHHHHHHHhhccccccccccccccCChhHHHHHh-hcCCCCC
Q 013172 83 SLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVG-KGCKKLK 161 (448)
Q Consensus 83 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~~L~ 161 (448)
+|++|++++|.+.......+ ..+++|++|+++++.+.......+ ..+++|++|+++++. +.......+. ..+++|+
T Consensus 98 ~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~ 174 (680)
T 1ziw_A 98 NLTELHLMSNSIQKIKNNPF-VKQKNLITLDLSHNGLSSTKLGTQ-VQLENLQELLLSNNK-IQALKSEELDIFANSSLK 174 (680)
T ss_dssp TCSEEECCSSCCCCCCSCTT-TTCTTCCEEECCSSCCSCCCCCSS-SCCTTCCEEECCSSC-CCCBCHHHHGGGTTCEES
T ss_pred CCCEEECCCCccCccChhHc-cccCCCCEEECCCCcccccCchhh-cccccCCEEEccCCc-ccccCHHHhhcccccccc
Confidence 78888887776654322222 346777777777666544322222 235667777766532 2221111111 1345666
Q ss_pred EEeecCCc
Q 013172 162 NLTLSDCY 169 (448)
Q Consensus 162 ~L~l~~~~ 169 (448)
.|+++++.
T Consensus 175 ~L~L~~n~ 182 (680)
T 1ziw_A 175 KLELSSNQ 182 (680)
T ss_dssp EEECTTCC
T ss_pred EEECCCCc
Confidence 66666553
No 22
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.88 E-value=2.1e-23 Score=196.52 Aligned_cols=356 Identities=17% Similarity=0.126 Sum_probs=158.9
Q ss_pred CCcceeeeccccccChhHHHHHHhhhCCCccEEEeccCCccChhhHHHHHhcCCCCceeeccccccchhhHHHHhhcCCc
Q 013172 29 NQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPL 108 (448)
Q Consensus 29 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 108 (448)
++|++|+++++ .+.......+ ..+ ++|++|++++|. +...........+++|++|++++|.+.......+ ..+++
T Consensus 30 ~~l~~L~Ls~n-~i~~~~~~~~-~~l-~~L~~L~L~~n~-~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~ 104 (455)
T 3v47_A 30 AHVNYVDLSLN-SIAELNETSF-SRL-QDLQFLKVEQQT-PGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAF-NGLAN 104 (455)
T ss_dssp TTCCEEECCSS-CCCEECTTTT-SSC-TTCCEEECCCCS-TTCEECTTTTTTCTTCCEEECTTCTTCEECTTTT-TTCTT
T ss_pred CccCEEEecCC-ccCcCChhHh-ccC-ccccEEECcCCc-ccceECcccccccccCCEEeCCCCccCccChhhc-cCccc
Confidence 67788888777 3443221122 223 678888887764 2211111222456778888887777654433333 34677
Q ss_pred ccEEEeeccCCCcHHHHH-HHhhccccccccccccccCChhHHHHHhhcCCCCCEEeecCCccCChhhHHHHHh-cCCCC
Q 013172 109 LRVLKLQCINVTDEALVA-VGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIAT-GCKEL 186 (448)
Q Consensus 109 L~~L~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~~L 186 (448)
|++|+++++.+....+.. ....+++|++|+++++. +.......++..+++|++|+++++.. .......+.. ..++|
T Consensus 105 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~l~~l~~~~L 182 (455)
T 3v47_A 105 LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKV-KSICEEDLLNFQGKHF 182 (455)
T ss_dssp CCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCCB-SCCCTTTSGGGTTCEE
T ss_pred CCEEeCCCCCCCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCcc-cccChhhhhccccccc
Confidence 888888777776543332 12336777777776643 32221222234566777777776642 2111111100 12456
Q ss_pred cEEEecCCCCCChhh-----HHHH--hhcCCCcceEecccccccCchhHHHHhc--cCcCCceEeccCCcCcChH-----
Q 013172 187 THLEINGCHNIGTMG-----LESI--GKFCRNLTELALLYCQRIGNLALLEVGR--GCKSLQALHLVDCSSIGDD----- 252 (448)
Q Consensus 187 ~~L~l~~~~~~~~~~-----~~~l--~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~----- 252 (448)
+.|++.++. +.... .... ...+++|++|+++++ .+.......+.. ..++|+.|+++++......
T Consensus 183 ~~L~l~~n~-l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 260 (455)
T 3v47_A 183 TLLRLSSIT-LQDMNEYWLGWEKCGNPFKNTSITTLDLSGN-GFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTN 260 (455)
T ss_dssp EEEECTTCB-CTTCSTTCTTHHHHCCTTTTCEEEEEECTTS-CCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCS
T ss_pred cccccccCc-ccccchhhccccccccccccceeeeEecCCC-cccccchhhhhccccccceeeEeeccccccccccchhh
Confidence 666666532 11110 0000 011255666666653 233222222211 1255666666554211100
Q ss_pred ----HHHHH-HHhCCCCcEEEccccccccCchHhHhhhcCCCCcEEeccccCCcCchHHHhhccCCCccEEeeeCccccC
Q 013172 253 ----AICSI-AEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIG 327 (448)
Q Consensus 253 ----~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 327 (448)
....+ ....++|+.|+++++. +.... ......+++|++|+++++ .+.......+...++|++|+++++ .++
T Consensus 261 ~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~ 336 (455)
T 3v47_A 261 FKDPDNFTFKGLEASGVKTCDLSKSK-IFALL-KSVFSHFTDLEQLTLAQN-EINKIDDNAFWGLTHLLKLNLSQN-FLG 336 (455)
T ss_dssp SCCCCTTTTGGGTTSCCCEEECCSSC-CCEEC-TTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCC
T ss_pred hccCcccccccccccCceEEEecCcc-ccccc-hhhcccCCCCCEEECCCC-cccccChhHhcCcccCCEEECCCC-ccC
Confidence 00000 0012455555555532 22211 112234555555555553 243333334444445555555553 232
Q ss_pred hHHHHHHHhhCCCCCEEeccCcCCCCHHHHHHHhcCCCCCcEEeccCCCCCChHHHHHHHHcCccCceEeccCCC
Q 013172 328 DAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSHCRQITDVGLSHLVKNCRMLESCHMVYCP 402 (448)
Q Consensus 328 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~ 402 (448)
... ......+++|+.|++++| .++......+ ..+++|++|+++++ .++..... .+..+++|+.|++++|+
T Consensus 337 ~~~-~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 337 SID-SRMFENLDKLEVLDLSYN-HIRALGDQSF-LGLPNLKELALDTN-QLKSVPDG-IFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp EEC-GGGGTTCTTCCEEECCSS-CCCEECTTTT-TTCTTCCEEECCSS-CCSCCCTT-TTTTCTTCCEEECCSSC
T ss_pred CcC-hhHhcCcccCCEEECCCC-cccccChhhc-cccccccEEECCCC-ccccCCHh-HhccCCcccEEEccCCC
Confidence 211 111234555555555555 2322211111 23555555555552 34432221 11235555555555544
No 23
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=7.7e-21 Score=171.54 Aligned_cols=156 Identities=22% Similarity=0.393 Sum_probs=72.3
Q ss_pred CCCCcEEEecCCCCCChhhHHHHhhcCCCcceEecccccccCchhHHHHhccCc-CCceEeccCCc-CcChHHHHHHHHh
Q 013172 183 CKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCK-SLQALHLVDCS-SIGDDAICSIAEG 260 (448)
Q Consensus 183 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~-~~~~~~~~~~~~~ 260 (448)
+++|++|++.+|..+...++......+++|++|++++|..+++..+......++ +|++|++++|. .+++..+......
T Consensus 141 ~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~ 220 (336)
T 2ast_B 141 NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR 220 (336)
T ss_dssp CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhh
Confidence 444444444443333333333333334444444444432333333333334445 55555555543 3444444444444
Q ss_pred CCCCcEEEccccccccCchHhHhhhcCCCCcEEeccccCCcCchHHHhhccCCCccEEeeeCccccChHHHHHHHhhCCC
Q 013172 261 CQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPE 340 (448)
Q Consensus 261 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 340 (448)
+++|++|++++|..+++..+..+ ..+++|++|++++|..+.+.++..+...++|+.|++++| +++.++..+...++.
T Consensus 221 ~~~L~~L~l~~~~~l~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~--i~~~~~~~l~~~l~~ 297 (336)
T 2ast_B 221 CPNLVHLDLSDSVMLKNDCFQEF-FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI--VPDGTLQLLKEALPH 297 (336)
T ss_dssp CTTCSEEECTTCTTCCGGGGGGG-GGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS--SCTTCHHHHHHHSTT
T ss_pred CCCCCEEeCCCCCcCCHHHHHHH-hCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc--cCHHHHHHHHhhCcc
Confidence 55666666655543443333333 234566666665554444444444545455555555554 444444444333333
Q ss_pred C
Q 013172 341 L 341 (448)
Q Consensus 341 L 341 (448)
|
T Consensus 298 L 298 (336)
T 2ast_B 298 L 298 (336)
T ss_dssp S
T ss_pred e
Confidence 3
No 24
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=5.3e-21 Score=172.61 Aligned_cols=254 Identities=18% Similarity=0.267 Sum_probs=156.6
Q ss_pred CCccEEEeccCCccChhhHHHHHhcCCCCceeeccccccchhhHHHHhhcCCcccEEEeeccCCCcHHHHHHHhhccccc
Q 013172 56 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLE 135 (448)
Q Consensus 56 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 135 (448)
..++.++++++. +.+..+..+. .++++.+++.++.+...... + ..+++|++|+++++.+.+..+......+++|+
T Consensus 47 ~~~~~l~l~~~~-~~~~~~~~~~--~~~l~~L~l~~n~l~~~~~~-~-~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~ 121 (336)
T 2ast_B 47 SLWQTLDLTGKN-LHPDVTGRLL--SQGVIAFRCPRSFMDQPLAE-H-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ 121 (336)
T ss_dssp TTSSEEECTTCB-CCHHHHHHHH--HTTCSEEECTTCEECSCCCS-C-CCCBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred hhheeecccccc-CCHHHHHhhh--hccceEEEcCCccccccchh-h-ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence 347777777653 4433333221 16777777777665443222 2 23677777777777766655555556677777
Q ss_pred cccccccccCChhHHHHHhhcCCCCCEEeecCCccCChhhHHHHHhcCCCCcEEEecCCCCCChhhHHHHhhcCC-Ccce
Q 013172 136 LLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCR-NLTE 214 (448)
Q Consensus 136 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~-~L~~ 214 (448)
+|+++++. +.+.....+. .+++|++|++++|..+++..+......+++|++|++.+|..+...++......++ +|++
T Consensus 122 ~L~L~~~~-l~~~~~~~l~-~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~ 199 (336)
T 2ast_B 122 NLSLEGLR-LSDPIVNTLA-KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQ 199 (336)
T ss_dssp EEECTTCB-CCHHHHHHHT-TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCE
T ss_pred EEeCcCcc-cCHHHHHHHh-cCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCE
Confidence 77777653 5544444443 4777777777777556666666666667777777777764566555555555567 7777
Q ss_pred Eeccccc-ccCchhHHHHhccCcCCceEeccCCcCcChHHHHHHHHhCCCCcEEEccccccccCchHhHhhhcCCCCcEE
Q 013172 215 LALLYCQ-RIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTEL 293 (448)
Q Consensus 215 L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 293 (448)
|++++|. .+++..+.....++++|+.|++++|..+++..+..+ ..+++|++|++++|..+.+.++..+ ..+++|++|
T Consensus 200 L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~l-~~~~~L~~L 277 (336)
T 2ast_B 200 LNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF-FQLNYLQHLSLSRCYDIIPETLLEL-GEIPTLKTL 277 (336)
T ss_dssp EECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG-GGCTTCCEEECTTCTTCCGGGGGGG-GGCTTCCEE
T ss_pred EEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHH-hCCCCCCEeeCCCCCCCCHHHHHHH-hcCCCCCEE
Confidence 7777754 455555555666677777777777654555444444 3467788888877755555544333 347788888
Q ss_pred eccccCCcCchHHHhhccCCCccEEeeeC
Q 013172 294 SLRFCDRVGDEALISIGQGCSLQHLNVSG 322 (448)
Q Consensus 294 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 322 (448)
++++| +++..+..+.. .++.|++..
T Consensus 278 ~l~~~--i~~~~~~~l~~--~l~~L~l~~ 302 (336)
T 2ast_B 278 QVFGI--VPDGTLQLLKE--ALPHLQINC 302 (336)
T ss_dssp ECTTS--SCTTCHHHHHH--HSTTSEESC
T ss_pred eccCc--cCHHHHHHHHh--hCcceEEec
Confidence 88776 66655555532 244445544
No 25
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.87 E-value=2e-23 Score=206.77 Aligned_cols=358 Identities=16% Similarity=0.102 Sum_probs=182.3
Q ss_pred CCccEEEeccCCccChhhHHHHHhcC--CCCceeeccccccchhhHHHHhhcCCcccEEEeeccCCCcHHHHHHHhhccc
Q 013172 56 KSLKSLGIAACVKITDVSLEAVGSHC--KSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLS 133 (448)
Q Consensus 56 ~~L~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 133 (448)
++|++|+++++. +.......+ ..+ ++|++|++++|.+.......+ ..+++|++|+++++.+.......+. .+++
T Consensus 222 ~~L~~L~L~~n~-l~~~~~~~~-~~l~~~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~ 297 (680)
T 1ziw_A 222 TSIRNLSLSNSQ-LSTTSNTTF-LGLKWTNLTMLDLSYNNLNVVGNDSF-AWLPQLEYFFLEYNNIQHLFSHSLH-GLFN 297 (680)
T ss_dssp SCCCEEECTTSC-CCEECTTTT-GGGGGSCCCEEECTTSCCCEECTTTT-TTCTTCCEEECCSCCBSEECTTTTT-TCTT
T ss_pred ccccEEEccCCc-ccccChhHh-hccCcCCCCEEECCCCCcCccCcccc-cCcccccEeeCCCCccCccChhhhc-CCCC
Confidence 567777777764 333222222 122 447888887776654333333 3467788888877766544333332 3667
Q ss_pred cccccccccccCChh---HHHH----HhhcCCCCCEEeecCCccCChhhHHHHHhcCCCCcEEEecCCC-----------
Q 013172 134 LELLALYSFQQFTDK---GLHA----VGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCH----------- 195 (448)
Q Consensus 134 L~~L~l~~~~~~~~~---~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~----------- 195 (448)
|+.|+++++...... .++. .+..+++|++|+++++. +.... ......+++|++|+++++.
T Consensus 298 L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f 375 (680)
T 1ziw_A 298 VRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND-IPGIK-SNMFTGLINLKYLSLSNSFTSLRTLTNETF 375 (680)
T ss_dssp CCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCC-BCCCC-TTTTTTCTTCCEEECTTCBSCCCEECTTTT
T ss_pred ccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCc-cCCCC-hhHhccccCCcEEECCCCchhhhhcchhhh
Confidence 777777642111000 0000 12345677777776664 22211 1112345666666665532
Q ss_pred ----------------CCChhhHHHHhhcCCCcceEecccccccCchhHHHHhccCcCCceEeccCCcCcChHHHHHHHH
Q 013172 196 ----------------NIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAE 259 (448)
Q Consensus 196 ----------------~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 259 (448)
.+....... ...+++|+.|+++++. +...........+++|+.|+++++. +..... ..+.
T Consensus 376 ~~~~~~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~~ 451 (680)
T 1ziw_A 376 VSLAHSPLHILNLTKNKISKIESDA-FSWLGHLEVLDLGLNE-IGQELTGQEWRGLENIFEIYLSYNK-YLQLTR-NSFA 451 (680)
T ss_dssp GGGTTSCCCEEECTTSCCCEECTTT-TTTCTTCCEEECCSSC-CEEECCSGGGTTCTTCCEEECCSCS-EEECCT-TTTT
T ss_pred cccccCcCceEECCCCCCCeEChhh-hhCCCCCCEEeCCCCc-CccccCcccccCcccccEEecCCCC-cceeCh-hhhh
Confidence 111110111 1123455555555421 2111111122345555555555532 111000 0112
Q ss_pred hCCCCcEEEccccccccCchHhHhhhcCCCCcEEeccccCCcCchHHHhhccCCCccEEeeeCccccChHHH-------H
Q 013172 260 GCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGI-------M 332 (448)
Q Consensus 260 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-------~ 332 (448)
.+++|+.|++.++........+.....+++|++|+++++ .++......+....+|+.|+++++ .++.... .
T Consensus 452 ~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~ 529 (680)
T 1ziw_A 452 LVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN-NIANINDDMLEGLEKLEILDLQHN-NLARLWKHANPGGPI 529 (680)
T ss_dssp TCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCGGGGSTTSTTSCC
T ss_pred cCcccccchhccccccccccCCcccccCCCCCEEECCCC-CCCcCChhhhccccccCEEeCCCC-CccccchhhccCCcc
Confidence 355666666655421111112223345778888888774 355444445666677888888874 3432110 0
Q ss_pred HHHhhCCCCCEEeccCcCCCCHHHHHHHhcCCCCCcEEeccCCCCCChHHHHHHHHcCccCceEeccCCCCCCHHHHHHH
Q 013172 333 AIAKGCPELNYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSHCRQITDVGLSHLVKNCRMLESCHMVYCPGITAAGVATV 412 (448)
Q Consensus 333 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~ 412 (448)
.....+++|+.|++++| .++.... ..+..+++|++|++++ +.++..... .+..+++|+.|++++|. ++......+
T Consensus 530 ~~~~~l~~L~~L~L~~N-~l~~i~~-~~~~~l~~L~~L~Ls~-N~l~~l~~~-~~~~l~~L~~L~L~~N~-l~~~~~~~~ 604 (680)
T 1ziw_A 530 YFLKGLSHLHILNLESN-GFDEIPV-EVFKDLFELKIIDLGL-NNLNTLPAS-VFNNQVSLKSLNLQKNL-ITSVEKKVF 604 (680)
T ss_dssp CTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCS-SCCCCCCTT-TTTTCTTCCEEECTTSC-CCBCCHHHH
T ss_pred hhhcCCCCCCEEECCCC-CCCCCCH-HHcccccCcceeECCC-CCCCcCCHh-HhCCCCCCCEEECCCCc-CCccChhHh
Confidence 11346788888888887 4442221 1234688999999987 457654332 23457889999998885 332222222
Q ss_pred HhcCccceEEEEeeeeec
Q 013172 413 VSGCANIKKVMVEKWKVS 430 (448)
Q Consensus 413 ~~~~~~L~~L~l~~~~~~ 430 (448)
...+++|+.+++++|++.
T Consensus 605 ~~~~~~L~~l~l~~N~~~ 622 (680)
T 1ziw_A 605 GPAFRNLTELDMRFNPFD 622 (680)
T ss_dssp HHHHTTCSEEECTTCCCC
T ss_pred cccccccCEEEccCCCcc
Confidence 125688999999888764
No 26
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.87 E-value=5.5e-23 Score=197.01 Aligned_cols=124 Identities=12% Similarity=0.052 Sum_probs=85.6
Q ss_pred eeEEEeeeeccccccccccchhccccCCcceeeeccccccChhHHHHHHhhhCCCccEEEeccCCccChhhHHHHHhcCC
Q 013172 3 KLVLNFGFCKGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCK 82 (448)
Q Consensus 3 ~~~L~~s~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 82 (448)
+.+|+++.|.+..+....+ ..+++|++|+++++ .+.......+ ..+ ++|++|++++|. ++..... .++
T Consensus 23 L~~L~Ls~n~i~~~~~~~~----~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l-~~L~~L~Ls~N~-l~~lp~~----~l~ 90 (520)
T 2z7x_B 23 TTILNISQNYISELWTSDI----LSLSKLRILIISHN-RIQYLDISVF-KFN-QELEYLDLSHNK-LVKISCH----PTV 90 (520)
T ss_dssp CSEEECCSSCCCCCCHHHH----TTCTTCCEEECCSS-CCCEEEGGGG-TTC-TTCCEEECCSSC-CCEEECC----CCC
T ss_pred ccEEECCCCcccccChhhc----cccccccEEecCCC-ccCCcChHHh-hcc-cCCCEEecCCCc-eeecCcc----ccC
Confidence 4689999987776554333 34589999999998 4554322222 233 789999999985 5432222 689
Q ss_pred CCceeeccccccchhhHHHHhhcCCcccEEEeeccCCCcHHHHHHHhhcccc--cccccccc
Q 013172 83 SLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSL--ELLALYSF 142 (448)
Q Consensus 83 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L--~~L~l~~~ 142 (448)
+|++|++++|.+....+...+..+++|++|+++++.+....+ ..+++| +.|+++++
T Consensus 91 ~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~----~~l~~L~L~~L~l~~n 148 (520)
T 2z7x_B 91 NLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSV----LPIAHLNISKVLLVLG 148 (520)
T ss_dssp CCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGGG----GGGTTSCEEEEEEEEC
T ss_pred CccEEeccCCccccccchhhhccCCcceEEEecCcccchhhc----cccccceeeEEEeecc
Confidence 999999999988764443444568999999999988876332 235666 88888764
No 27
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.87 E-value=1.2e-23 Score=212.26 Aligned_cols=320 Identities=16% Similarity=0.031 Sum_probs=171.3
Q ss_pred eeEEEeeeeccccccccccchhccccCCcceeeeccccccChhHHHHHHhhhCCCccEEEeccCCccChhhHHHHHhcCC
Q 013172 3 KLVLNFGFCKGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCK 82 (448)
Q Consensus 3 ~~~L~~s~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 82 (448)
+.+||+|+|.+..+....+. .+++|++|+++++.......... +..+ ++|++|++++|. +....+..+ ..++
T Consensus 26 l~~LdLs~N~i~~i~~~~~~----~l~~L~~LdLs~n~~~~~i~~~~-f~~L-~~L~~L~Ls~N~-l~~~~p~~~-~~l~ 97 (844)
T 3j0a_A 26 TERLLLSFNYIRTVTASSFP----FLEQLQLLELGSQYTPLTIDKEA-FRNL-PNLRILDLGSSK-IYFLHPDAF-QGLF 97 (844)
T ss_dssp CCEEEEESCCCCEECSSSCS----SCCSCSEEEECTTCCCCEECTTT-TSSC-TTCCEEECTTCC-CCEECTTSS-CSCS
T ss_pred cCEEECCCCcCCccChhHCc----ccccCeEEeCCCCCCccccCHHH-hcCC-CCCCEEECCCCc-CcccCHhHc-cCCc
Confidence 46789998887766655543 34889999998874322211111 1233 688999998875 544333333 4678
Q ss_pred CCceeeccccccchhhHH-HHhhcCCcccEEEeeccCCCcHHHHHHHhhcccccccccccccc--CChhHHHHHhhcCCC
Q 013172 83 SLETLSLDSEFIHNKGVH-AVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQ--FTDKGLHAVGKGCKK 159 (448)
Q Consensus 83 ~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--~~~~~~~~~~~~~~~ 159 (448)
+|++|++++|.+....+. ..+..+++|++|++++|.+....+......+++|++|+++++.- .....+..+.. ++
T Consensus 98 ~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~--~~ 175 (844)
T 3j0a_A 98 HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG--KT 175 (844)
T ss_dssp SCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHH--CS
T ss_pred ccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccC--Cc
Confidence 899999988877653322 23456788889998888776543322234478888888886431 11223333221 56
Q ss_pred CCEEeecCCccCChhhHHHHHhcCC------CCcEEEecCCCCCChhhHHHH----------------------------
Q 013172 160 LKNLTLSDCYFLSDMGLEAIATGCK------ELTHLEINGCHNIGTMGLESI---------------------------- 205 (448)
Q Consensus 160 L~~L~l~~~~~~~~~~~~~~~~~~~------~L~~L~l~~~~~~~~~~~~~l---------------------------- 205 (448)
|+.|+++++........ . ...++ .|+.|+++++. +.......+
T Consensus 176 L~~L~L~~n~l~~~~~~-~-~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l 252 (844)
T 3j0a_A 176 LSFFSLAANSLYSRVSV-D-WGKCMNPFRNMVLEILDVSGNG-WTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNI 252 (844)
T ss_dssp SCCCEECCSBSCCCCCC-C-CCSSSCTTTTCCBSEEBCSSCC-SSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSS
T ss_pred cceEECCCCcccccccc-c-hhhcCCccccCceeEEecCCCc-CchhHHHHHHhhcCcccccceeccccccccccccccc
Confidence 77777776642211100 0 00111 36777776542 111000000
Q ss_pred --------hh-cCCCcceEecccccccCchhHHHHhccCcCCceEeccCCcCcChHHHHHHHHhCCCCcEEEcccccccc
Q 013172 206 --------GK-FCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIG 276 (448)
Q Consensus 206 --------~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 276 (448)
.. ..++|+.|+++++ .+.... ...+..+++|+.|+++++. +...... .+..+++|++|+++++. ++
T Consensus 253 ~~~~~~~f~~l~~~~L~~L~Ls~n-~l~~~~-~~~~~~l~~L~~L~L~~n~-i~~~~~~-~~~~l~~L~~L~Ls~N~-l~ 327 (844)
T 3j0a_A 253 KDPDQNTFAGLARSSVRHLDLSHG-FVFSLN-SRVFETLKDLKVLNLAYNK-INKIADE-AFYGLDNLQVLNLSYNL-LG 327 (844)
T ss_dssp TTGGGTTTTTTTTSCCCEEECTTC-CCCEEC-SCCSSSCCCCCEEEEESCC-CCEECTT-TTTTCSSCCEEEEESCC-CS
T ss_pred CCCChhhhhccccCCccEEECCCC-cccccC-hhhhhcCCCCCEEECCCCc-CCCCChH-HhcCCCCCCEEECCCCC-CC
Confidence 00 0256777777663 222211 1223456777777777642 3221111 22346777777777653 33
Q ss_pred CchHhHhhhcCCCCcEEeccccCCcCchHHHhhccCCCccEEeeeCccccChHHHHHHHhhCCCCCEEeccCc
Q 013172 277 NNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVL 349 (448)
Q Consensus 277 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 349 (448)
.... .....+++|+.|+++++ .+.......+...++|+.|+++++ .++.. ..+++|+.|++++|
T Consensus 328 ~~~~-~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~i------~~~~~L~~L~l~~N 391 (844)
T 3j0a_A 328 ELYS-SNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDN-ALTTI------HFIPSIPDIFLSGN 391 (844)
T ss_dssp CCCS-CSCSSCTTCCEEECCSC-CCCCCCSSCSCSCCCCCEEEEETC-CSCCC------SSCCSCSEEEEESC
T ss_pred ccCH-HHhcCCCCCCEEECCCC-CCCccChhhhcCCCCCCEEECCCC-CCCcc------cCCCCcchhccCCC
Confidence 2211 12235677777777764 344433344555566777777764 33321 12456666666555
No 28
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.86 E-value=2.8e-23 Score=201.56 Aligned_cols=207 Identities=15% Similarity=0.069 Sum_probs=136.3
Q ss_pred cCCCCcEEEecCCCCCChhhHHHHhhcCCCcceEecccccccCchh-HHHHhccCcCCceEeccCCcCcChHHHHHHHHh
Q 013172 182 GCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLA-LLEVGRGCKSLQALHLVDCSSIGDDAICSIAEG 260 (448)
Q Consensus 182 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 260 (448)
.+++|+.|++.++........ ..+++|+.|+++++. +.... .......+++|+.|+++++. +...... ...
T Consensus 323 ~l~~L~~L~l~~n~~~~~~~~----~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~--~~~ 394 (570)
T 2z63_A 323 KLKSLKRLTFTSNKGGNAFSE----VDLPSLEFLDLSRNG-LSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSN--FLG 394 (570)
T ss_dssp BCSSCCEEEEESCBSCCBCCC----CBCTTCCEEECCSSC-CBEEEEEEHHHHTCSCCCEEECCSCS-EEEEEEE--EET
T ss_pred cccccCEEeCcCCcccccccc----ccCCCCCEEeCcCCc-cCccccccccccccCccCEEECCCCc-ccccccc--ccc
Confidence 345666666665432221111 346999999999853 33221 12334568999999999864 2211111 345
Q ss_pred CCCCcEEEccccccccCchHhHhhhcCCCCcEEeccccCCcCchHHHhhccCCCccEEeeeCccccChHHHHHHHhhCCC
Q 013172 261 CQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPE 340 (448)
Q Consensus 261 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 340 (448)
+++|++|++.++. +...........+++|++|+++++. +.......+...++|+.|+++++. +++..+......+++
T Consensus 395 l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~p~~~~~l~~ 471 (570)
T 2z63_A 395 LEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNS-FQENFLPDIFTELRN 471 (570)
T ss_dssp CTTCCEEECTTSE-EESCTTSCTTTTCTTCCEEECTTSC-CEECCTTTTTTCTTCCEEECTTCE-EGGGEECSCCTTCTT
T ss_pred cCCCCEEEccCCc-cccccchhhhhcCCCCCEEeCcCCc-ccccchhhhhcCCcCcEEECcCCc-CccccchhhhhcccC
Confidence 8999999999864 4433222334578999999999964 544445566677889999999863 432223334457899
Q ss_pred CCEEeccCcCCCCHHHHHHHhcCCCCCcEEeccCCCCCChHHHHHHHHcCccCceEeccCCCC
Q 013172 341 LNYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSHCRQITDVGLSHLVKNCRMLESCHMVYCPG 403 (448)
Q Consensus 341 L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~ 403 (448)
|+.|++++| .++......+ ..+++|++|++++| .++......+ ..+++|+.|++++|+.
T Consensus 472 L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~N~~ 530 (570)
T 2z63_A 472 LTFLDLSQC-QLEQLSPTAF-NSLSSLQVLNMASN-QLKSVPDGIF-DRLTSLQKIWLHTNPW 530 (570)
T ss_dssp CCEEECTTS-CCCEECTTTT-TTCTTCCEEECCSS-CCSCCCTTTT-TTCTTCCEEECCSSCB
T ss_pred CCEEECCCC-ccccCChhhh-hcccCCCEEeCCCC-cCCCCCHHHh-hcccCCcEEEecCCcc
Confidence 999999998 4554322223 46899999999995 5766543333 4689999999999864
No 29
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.86 E-value=4.7e-23 Score=199.04 Aligned_cols=156 Identities=12% Similarity=0.092 Sum_probs=78.5
Q ss_pred hCCCCcEEEccccccccCchHhHhhhcCCCCcEEeccccCCcCc--hHHHhhccCCCccEEeeeCccccChHHHHHHHhh
Q 013172 260 GCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGD--EALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKG 337 (448)
Q Consensus 260 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 337 (448)
.+++|++|+++++. ++.... .....+++|++|+++++ .+.. .....+...++|+.|+++++ .++..........
T Consensus 351 ~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~ 426 (562)
T 3a79_B 351 SPSSFTFLNFTQNV-FTDSVF-QGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLN-SLNSHAYDRTCAW 426 (562)
T ss_dssp SCCCCCEEECCSSC-CCTTTT-TTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTS-CCBSCCSSCCCCC
T ss_pred CCCCceEEECCCCc-cccchh-hhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCC-cCCCccChhhhcC
Confidence 35566666666542 332211 12234566666666663 3433 22233455556666666653 2322111112224
Q ss_pred CCCCCEEeccCcCCCCHHHHHHHhcCC-CCCcEEeccCCCCCChHHHHHHHHcCccCceEeccCCCCCCHHHHHH-HHhc
Q 013172 338 CPELNYLDVSVLQNLGDQAMVELGKGC-PLLKDVVLSHCRQITDVGLSHLVKNCRMLESCHMVYCPGITAAGVAT-VVSG 415 (448)
Q Consensus 338 ~~~L~~L~l~~~~~l~~~~~~~~~~~~-~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~-~~~~ 415 (448)
+++|+.|++++| .++... ...+ ++|++|+++++ .++.... .+. .+++|+.|++++|. ++. ++. .+..
T Consensus 427 l~~L~~L~l~~n-~l~~~~----~~~l~~~L~~L~L~~N-~l~~ip~-~~~-~l~~L~~L~L~~N~-l~~--l~~~~~~~ 495 (562)
T 3a79_B 427 AESILVLNLSSN-MLTGSV----FRCLPPKVKVLDLHNN-RIMSIPK-DVT-HLQALQELNVASNQ-LKS--VPDGVFDR 495 (562)
T ss_dssp CTTCCEEECCSS-CCCGGG----GSSCCTTCSEEECCSS-CCCCCCT-TTT-SSCCCSEEECCSSC-CCC--CCTTSTTT
T ss_pred cccCCEEECCCC-CCCcch----hhhhcCcCCEEECCCC-cCcccCh-hhc-CCCCCCEEECCCCC-CCC--CCHHHHhc
Confidence 566666666666 343221 1223 57777777764 4553221 122 56777777777765 321 111 2456
Q ss_pred CccceEEEEeeeeec
Q 013172 416 CANIKKVMVEKWKVS 430 (448)
Q Consensus 416 ~~~L~~L~l~~~~~~ 430 (448)
+++|+.|++++|++.
T Consensus 496 l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 496 LTSLQYIWLHDNPWD 510 (562)
T ss_dssp CTTCCCEECCSCCBC
T ss_pred CCCCCEEEecCCCcC
Confidence 677777777777664
No 30
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.85 E-value=7.2e-24 Score=206.95 Aligned_cols=323 Identities=10% Similarity=0.015 Sum_probs=157.8
Q ss_pred cCCCCceeeccccccchhhHHHHhhcCCcccEEEeeccC-CCc-HHHHHHHh-----hccccccccccccccCChhHHHH
Q 013172 80 HCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCIN-VTD-EALVAVGN-----QCLSLELLALYSFQQFTDKGLHA 152 (448)
Q Consensus 80 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~-----~~~~L~~L~l~~~~~~~~~~~~~ 152 (448)
.+++|++|++++|.+....... +..+++|++|++++|. ++. ..+..+.. .+++|++|+++++. +. .++.
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~--~ip~ 322 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTF-LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LK--TFPV 322 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTT-TTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CS--SCCC
T ss_pred ccCCCCEEEecCCcCCccChHH-HhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CC--ccCc
Confidence 5666666666666554322222 2346666666666665 554 33333332 13666666666532 22 2222
Q ss_pred --HhhcCCCCCEEeecCCccCChhhHHHHHhcCCCCcEEEecCCCCCChhhHHHHhhcCCC-cceEecccccccCchhHH
Q 013172 153 --VGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRN-LTELALLYCQRIGNLALL 229 (448)
Q Consensus 153 --~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~-L~~L~l~~~~~~~~~~~~ 229 (448)
.+..+++|+.|+++++......+ ....+++|+.|+++++. +.. +......+++ |++|+++++. +...+
T Consensus 323 ~~~l~~l~~L~~L~L~~N~l~g~ip---~~~~l~~L~~L~L~~N~-l~~--lp~~l~~l~~~L~~L~Ls~N~-l~~lp-- 393 (636)
T 4eco_A 323 ETSLQKMKKLGMLECLYNQLEGKLP---AFGSEIKLASLNLAYNQ-ITE--IPANFCGFTEQVENLSFAHNK-LKYIP-- 393 (636)
T ss_dssp HHHHTTCTTCCEEECCSCCCEEECC---CCEEEEEESEEECCSSE-EEE--CCTTSEEECTTCCEEECCSSC-CSSCC--
T ss_pred hhhhccCCCCCEEeCcCCcCccchh---hhCCCCCCCEEECCCCc-ccc--ccHhhhhhcccCcEEEccCCc-Ccccc--
Confidence 33456666666666664210111 12345566666666532 221 1111222355 7777776632 32111
Q ss_pred HHhcc--CcCCceEeccCCcCcChHHHHHHH------HhCCCCcEEEccccccccCchHhHhhhcCCCCcEEeccccCCc
Q 013172 230 EVGRG--CKSLQALHLVDCSSIGDDAICSIA------EGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRV 301 (448)
Q Consensus 230 ~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 301 (448)
..... +++|+.|+++++. +.......+. -.+++|+.|+++++. ++.. ...+...+++|++|+++++. +
T Consensus 394 ~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~-l~~l-p~~~~~~l~~L~~L~Ls~N~-l 469 (636)
T 4eco_A 394 NIFDAKSVSVMSAIDFSYNE-IGSVDGKNFDPLDPTPFKGINVSSINLSNNQ-ISKF-PKELFSTGSPLSSINLMGNM-L 469 (636)
T ss_dssp SCCCTTCSSCEEEEECCSSC-TTTTTTCSSCTTCSSCCCCCCEEEEECCSSC-CCSC-CTHHHHTTCCCSEEECCSSC-C
T ss_pred hhhhhcccCccCEEECcCCc-CCCcchhhhcccccccccCCCCCEEECcCCc-cCcC-CHHHHccCCCCCEEECCCCC-C
Confidence 11122 2367777776642 2211111110 024567777777643 3321 12233456777777777743 3
Q ss_pred CchHHHhhccC-------CCccEEeeeCccccChHHHHHHHh--hCCCCCEEeccCcCCCCHHHHHHHhcCCCCCcEEec
Q 013172 302 GDEALISIGQG-------CSLQHLNVSGCHQIGDAGIMAIAK--GCPELNYLDVSVLQNLGDQAMVELGKGCPLLKDVVL 372 (448)
Q Consensus 302 ~~~~~~~l~~~-------~~L~~L~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l 372 (448)
.......+... ++|+.|+++++ .++. +..... .+++|+.|++++| .++. +......+++|++|++
T Consensus 470 ~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~--lp~~~~~~~l~~L~~L~Ls~N-~l~~--ip~~~~~l~~L~~L~L 543 (636)
T 4eco_A 470 TEIPKNSLKDENENFKNTYLLTSIDLRFN-KLTK--LSDDFRATTLPYLVGIDLSYN-SFSK--FPTQPLNSSTLKGFGI 543 (636)
T ss_dssp SBCCSSSSEETTEECTTGGGCCEEECCSS-CCCB--CCGGGSTTTCTTCCEEECCSS-CCSS--CCCGGGGCSSCCEEEC
T ss_pred CCcCHHHhccccccccccCCccEEECcCC-cCCc--cChhhhhccCCCcCEEECCCC-CCCC--cChhhhcCCCCCEEEC
Confidence 32221112111 16777777764 4442 222222 5677778877777 3433 2222235777778777
Q ss_pred cCC-----CCCChHHHHHHHHcCccCceEeccCCCCCCHHHHHHHHhcCccceEEEEeeeeecc
Q 013172 373 SHC-----RQITDVGLSHLVKNCRMLESCHMVYCPGITAAGVATVVSGCANIKKVMVEKWKVSE 431 (448)
Q Consensus 373 ~~c-----~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 431 (448)
+++ +.+.......+ ..+++|+.|++++|.. +. ++.. -.++|+.|++++|++..
T Consensus 544 s~N~~ls~N~l~~~~p~~l-~~l~~L~~L~Ls~N~l-~~--ip~~--~~~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 544 RNQRDAQGNRTLREWPEGI-TLCPSLTQLQIGSNDI-RK--VNEK--ITPNISVLDIKDNPNIS 601 (636)
T ss_dssp CSCBCTTCCBCCCCCCTTG-GGCSSCCEEECCSSCC-CB--CCSC--CCTTCCEEECCSCTTCE
T ss_pred CCCcccccCcccccChHHH-hcCCCCCEEECCCCcC-Cc--cCHh--HhCcCCEEECcCCCCcc
Confidence 542 22222212222 3477788888777763 22 1111 12677888887776554
No 31
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.85 E-value=1.5e-22 Score=190.67 Aligned_cols=360 Identities=14% Similarity=0.099 Sum_probs=230.2
Q ss_pred CCccEEEeccCCccChhhHHHHHhcCCCCceeeccccccchhhHHHHhhcCCcccEEEeeccCCCcHHHHHHHhhccccc
Q 013172 56 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLE 135 (448)
Q Consensus 56 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 135 (448)
++|++|+++++. ++...... ...+++|++|++++|.+........+..+++|++|+++++.+.......+.. +++|+
T Consensus 30 ~~l~~L~Ls~n~-i~~~~~~~-~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~ 106 (455)
T 3v47_A 30 AHVNYVDLSLNS-IAELNETS-FSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNG-LANLE 106 (455)
T ss_dssp TTCCEEECCSSC-CCEECTTT-TSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTT-CTTCC
T ss_pred CccCEEEecCCc-cCcCChhH-hccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccC-cccCC
Confidence 689999999875 55443333 3568999999999987753322333456889999999988887654444443 78999
Q ss_pred cccccccccCChhHHH-HHhhcCCCCCEEeecCCccCChhhHHHHHhcCCCCcEEEecCCCCCChhhHHHHhh-cCCCcc
Q 013172 136 LLALYSFQQFTDKGLH-AVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGK-FCRNLT 213 (448)
Q Consensus 136 ~L~l~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~-~~~~L~ 213 (448)
+|+++++. +....+. ..+..+++|++|+++++. +.......+...+++|++|+++++. +.......+.. ..++|+
T Consensus 107 ~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~~~L~ 183 (455)
T 3v47_A 107 VLTLTQCN-LDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNK-VKSICEEDLLNFQGKHFT 183 (455)
T ss_dssp EEECTTSC-CBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCC-BSCCCTTTSGGGTTCEEE
T ss_pred EEeCCCCC-CCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCc-ccccChhhhhcccccccc
Confidence 99998854 4332222 224568899999999986 3332222234568999999998853 33222222211 126888
Q ss_pred eEecccccccCchhH-------HHHhccCcCCceEeccCCcCcChHHHHHHHHh--CCCCcEEEccccccccCc------
Q 013172 214 ELALLYCQRIGNLAL-------LEVGRGCKSLQALHLVDCSSIGDDAICSIAEG--CQNLKKLHIRRCYKIGNN------ 278 (448)
Q Consensus 214 ~L~l~~~~~~~~~~~-------~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~------ 278 (448)
.|++.++. +..... ......+++|+.|+++++ .+.......+... .++|+.|++.++......
T Consensus 184 ~L~l~~n~-l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 261 (455)
T 3v47_A 184 LLRLSSIT-LQDMNEYWLGWEKCGNPFKNTSITTLDLSGN-GFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNF 261 (455)
T ss_dssp EEECTTCB-CTTCSTTCTTHHHHCCTTTTCEEEEEECTTS-CCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSS
T ss_pred ccccccCc-ccccchhhccccccccccccceeeeEecCCC-cccccchhhhhccccccceeeEeeccccccccccchhhh
Confidence 99998743 222110 011124578999999985 4555554444443 378999999876322110
Q ss_pred ---h-HhHhhhcCCCCcEEeccccCCcCchHHHhhccCCCccEEeeeCccccChHHHHHHHhhCCCCCEEeccCcCCCCH
Q 013172 279 ---G-IVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGD 354 (448)
Q Consensus 279 ---~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 354 (448)
. ........++|++|+++++ .+.......+...++|+.|+++++ .++.... ..+..+++|+.|++++| .++.
T Consensus 262 ~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~ 337 (455)
T 3v47_A 262 KDPDNFTFKGLEASGVKTCDLSKS-KIFALLKSVFSHFTDLEQLTLAQN-EINKIDD-NAFWGLTHLLKLNLSQN-FLGS 337 (455)
T ss_dssp CCCCTTTTGGGTTSCCCEEECCSS-CCCEECTTTTTTCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECCSS-CCCE
T ss_pred ccCcccccccccccCceEEEecCc-cccccchhhcccCCCCCEEECCCC-cccccCh-hHhcCcccCCEEECCCC-ccCC
Confidence 0 0000112478999999885 466555566777778999999885 4543221 12346789999999998 4543
Q ss_pred HHHHHHhcCCCCCcEEeccCCCCCChHHHHHHHHcCccCceEeccCCCCCCHHHHHHHHhcCccceEEEEeeeeeccc
Q 013172 355 QAMVELGKGCPLLKDVVLSHCRQITDVGLSHLVKNCRMLESCHMVYCPGITAAGVATVVSGCANIKKVMVEKWKVSER 432 (448)
Q Consensus 355 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 432 (448)
..... ...+++|++|++++| .++......+ ..+++|++|++++|. ++... ...+..+++|+.|++++|++...
T Consensus 338 ~~~~~-~~~l~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~L~~N~-l~~~~-~~~~~~l~~L~~L~l~~N~l~~~ 410 (455)
T 3v47_A 338 IDSRM-FENLDKLEVLDLSYN-HIRALGDQSF-LGLPNLKELALDTNQ-LKSVP-DGIFDRLTSLQKIWLHTNPWDCS 410 (455)
T ss_dssp ECGGG-GTTCTTCCEEECCSS-CCCEECTTTT-TTCTTCCEEECCSSC-CSCCC-TTTTTTCTTCCEEECCSSCBCCC
T ss_pred cChhH-hcCcccCCEEECCCC-cccccChhhc-cccccccEEECCCCc-cccCC-HhHhccCCcccEEEccCCCcccC
Confidence 32222 346899999999985 5765543333 358999999999886 33211 12346789999999999987654
No 32
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.83 E-value=4.1e-23 Score=201.61 Aligned_cols=331 Identities=11% Similarity=0.073 Sum_probs=209.3
Q ss_pred HhcCCCCceeeccccccchh----------------hHHHHhh--cCCcccEEEeeccCCCcHHHHHHHhhccccccccc
Q 013172 78 GSHCKSLETLSLDSEFIHNK----------------GVHAVAQ--GCPLLRVLKLQCINVTDEALVAVGNQCLSLELLAL 139 (448)
Q Consensus 78 ~~~~~~L~~L~l~~~~~~~~----------------~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 139 (448)
...+++|++|++++|.++.. .+...+. .+++|++|++++|.+....+..+. .+++|++|++
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L 280 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK-ALPEMQLINV 280 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT-TCSSCCEEEC
T ss_pred HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh-cCCCCCEEEC
Confidence 45789999999999887662 0223333 688999999998876654444444 3889999999
Q ss_pred cccccCChhHHHHHhhc------CCCCCEEeecCCccCChhhHHH--HHhcCCCCcEEEecCCCCCC-hhhHHHHhhcCC
Q 013172 140 YSFQQFTDKGLHAVGKG------CKKLKNLTLSDCYFLSDMGLEA--IATGCKELTHLEINGCHNIG-TMGLESIGKFCR 210 (448)
Q Consensus 140 ~~~~~~~~~~~~~~~~~------~~~L~~L~l~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~-~~~~~~l~~~~~ 210 (448)
+++..+....++..... +++|++|+++++. +.. +.. ....+++|+.|+++++. +. ... .+ ..++
T Consensus 281 s~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~--ip~~~~l~~l~~L~~L~L~~N~-l~g~ip--~~-~~l~ 353 (636)
T 4eco_A 281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKT--FPVETSLQKMKKLGMLECLYNQ-LEGKLP--AF-GSEI 353 (636)
T ss_dssp TTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSS--CCCHHHHTTCTTCCEEECCSCC-CEEECC--CC-EEEE
T ss_pred cCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCc--cCchhhhccCCCCCEEeCcCCc-Cccchh--hh-CCCC
Confidence 98653555233333333 4899999999986 432 322 45578999999998854 33 222 22 3358
Q ss_pred CcceEecccccccCchhHHHHhccCcC-CceEeccCCcCcChHHHHHHHHh--CCCCcEEEccccccccCchHhHhh---
Q 013172 211 NLTELALLYCQRIGNLALLEVGRGCKS-LQALHLVDCSSIGDDAICSIAEG--CQNLKKLHIRRCYKIGNNGIVAVG--- 284 (448)
Q Consensus 211 ~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~--- 284 (448)
+|+.|+++++ .+. .+...+..+++ |+.|+++++. +.. +...... +++|+.|+++++. +.......+.
T Consensus 354 ~L~~L~L~~N-~l~--~lp~~l~~l~~~L~~L~Ls~N~-l~~--lp~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~~~ 426 (636)
T 4eco_A 354 KLASLNLAYN-QIT--EIPANFCGFTEQVENLSFAHNK-LKY--IPNIFDAKSVSVMSAIDFSYNE-IGSVDGKNFDPLD 426 (636)
T ss_dssp EESEEECCSS-EEE--ECCTTSEEECTTCCEEECCSSC-CSS--CCSCCCTTCSSCEEEEECCSSC-TTTTTTCSSCTTC
T ss_pred CCCEEECCCC-ccc--cccHhhhhhcccCcEEEccCCc-Ccc--cchhhhhcccCccCEEECcCCc-CCCcchhhhcccc
Confidence 9999999884 333 22223456788 9999999854 331 1111121 3479999999864 4332211111
Q ss_pred ---hcCCCCcEEeccccCCcCchHHHhhccCCCccEEeeeCccccChHHHHHHHh-------hCCCCCEEeccCcCCCCH
Q 013172 285 ---EHCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAK-------GCPELNYLDVSVLQNLGD 354 (448)
Q Consensus 285 ---~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~l~~ 354 (448)
-.+++|++|+++++. +.......+...++|+.|+++++ .++... ..+.. .+++|+.|++++| .++.
T Consensus 427 ~~~~~~~~L~~L~Ls~N~-l~~lp~~~~~~l~~L~~L~Ls~N-~l~~i~-~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~ 502 (636)
T 4eco_A 427 PTPFKGINVSSINLSNNQ-ISKFPKELFSTGSPLSSINLMGN-MLTEIP-KNSLKDENENFKNTYLLTSIDLRFN-KLTK 502 (636)
T ss_dssp SSCCCCCCEEEEECCSSC-CCSCCTHHHHTTCCCSEEECCSS-CCSBCC-SSSSEETTEECTTGGGCCEEECCSS-CCCB
T ss_pred cccccCCCCCEEECcCCc-cCcCCHHHHccCCCCCEEECCCC-CCCCcC-HHHhccccccccccCCccEEECcCC-cCCc
Confidence 045689999999854 55333333444678999999985 444211 11111 1238999999998 4552
Q ss_pred HHHHHHh-cCCCCCcEEeccCCCCCChHHHHHHHHcCccCceEeccCCCCCC----HHHHHHHHhcCccceEEEEeeeee
Q 013172 355 QAMVELG-KGCPLLKDVVLSHCRQITDVGLSHLVKNCRMLESCHMVYCPGIT----AAGVATVVSGCANIKKVMVEKWKV 429 (448)
Q Consensus 355 ~~~~~~~-~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~----~~~~~~~~~~~~~L~~L~l~~~~~ 429 (448)
.. ..+. ..+++|++|+++++ .++.. ...+ ..+++|+.|++++|+.+. ...++..+..+++|+.|++++|++
T Consensus 503 lp-~~~~~~~l~~L~~L~Ls~N-~l~~i-p~~~-~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 503 LS-DDFRATTLPYLVGIDLSYN-SFSKF-PTQP-LNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp CC-GGGSTTTCTTCCEEECCSS-CCSSC-CCGG-GGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred cC-hhhhhccCCCcCEEECCCC-CCCCc-Chhh-hcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence 21 1221 26899999999994 57652 2223 368999999997643111 011223356799999999999998
Q ss_pred cc
Q 013172 430 SE 431 (448)
Q Consensus 430 ~~ 431 (448)
..
T Consensus 579 ~~ 580 (636)
T 4eco_A 579 RK 580 (636)
T ss_dssp CB
T ss_pred Cc
Confidence 43
No 33
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.83 E-value=6.4e-22 Score=196.63 Aligned_cols=321 Identities=12% Similarity=0.050 Sum_probs=152.8
Q ss_pred cCCCCceeeccccccchhhHHHHhhcCCcccEEEeeccC-CCc-HHHHHHHh------hccccccccccccccCChhHHH
Q 013172 80 HCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCIN-VTD-EALVAVGN------QCLSLELLALYSFQQFTDKGLH 151 (448)
Q Consensus 80 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~------~~~~L~~L~l~~~~~~~~~~~~ 151 (448)
.+++|++|++++|.+..... ..+..+++|+.|++++|. ++. ..+..+.. .+++|+.|+++++. +. .++
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP-~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~--~ip 564 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLP-DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LE--EFP 564 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCC-GGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CC--BCC
T ss_pred cCCCCCEEECcCCCCCccCh-HHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CC--ccC
Confidence 45666666666665433222 222346666666666665 544 23332322 12366666666532 22 222
Q ss_pred H--HhhcCCCCCEEeecCCccCChhhHHHHHhcCCCCcEEEecCCCCCChhhHHHHhhcCCC-cceEecccccccCchhH
Q 013172 152 A--VGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRN-LTELALLYCQRIGNLAL 228 (448)
Q Consensus 152 ~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~-L~~L~l~~~~~~~~~~~ 228 (448)
. .+..+++|+.|+++++. +.. ++ ....+++|+.|+++++. +.. +......+++ |+.|+++++. +...+
T Consensus 565 ~~~~l~~L~~L~~L~Ls~N~-l~~--lp-~~~~L~~L~~L~Ls~N~-l~~--lp~~l~~l~~~L~~L~Ls~N~-L~~lp- 635 (876)
T 4ecn_A 565 ASASLQKMVKLGLLDCVHNK-VRH--LE-AFGTNVKLTDLKLDYNQ-IEE--IPEDFCAFTDQVEGLGFSHNK-LKYIP- 635 (876)
T ss_dssp CHHHHTTCTTCCEEECTTSC-CCB--CC-CCCTTSEESEEECCSSC-CSC--CCTTSCEECTTCCEEECCSSC-CCSCC-
T ss_pred ChhhhhcCCCCCEEECCCCC-ccc--ch-hhcCCCcceEEECcCCc-ccc--chHHHhhccccCCEEECcCCC-CCcCc-
Confidence 2 33455666666666654 222 11 22345666666666532 221 1111222355 6666666632 32111
Q ss_pred HHHhccC--cCCceEeccCCcCcChHHHHHHH---H--hCCCCcEEEccccccccCchHhHhhhcCCCCcEEeccccCCc
Q 013172 229 LEVGRGC--KSLQALHLVDCSSIGDDAICSIA---E--GCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRV 301 (448)
Q Consensus 229 ~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~---~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 301 (448)
...... ++|+.|+++++. +.... ..+. . .+++|+.|+++++. ++.. ...+...+++|+.|+++++ .+
T Consensus 636 -~~~~~~~~~~L~~L~Ls~N~-l~g~i-p~l~~~l~~~~~~~L~~L~Ls~N~-L~~l-p~~~~~~l~~L~~L~Ls~N-~L 709 (876)
T 4ecn_A 636 -NIFNAKSVYVMGSVDFSYNK-IGSEG-RNISCSMDDYKGINASTVTLSYNE-IQKF-PTELFATGSPISTIILSNN-LM 709 (876)
T ss_dssp -SCCCTTCSSCEEEEECCSSC-TTTTS-SSCSSCTTTCCCCCEEEEECCSSC-CCSC-CHHHHHTTCCCSEEECCSC-CC
T ss_pred -hhhhccccCCCCEEECcCCc-CCCcc-ccchhhhccccCCCcCEEEccCCc-CCcc-CHHHHccCCCCCEEECCCC-cC
Confidence 111222 336666666642 21100 0000 0 12367777777643 3321 1223345677777777764 23
Q ss_pred CchHHHhhc-------cCCCccEEeeeCccccChHHHHHHHh--hCCCCCEEeccCcCCCCHHHHHHHhcCCCCCcEEec
Q 013172 302 GDEALISIG-------QGCSLQHLNVSGCHQIGDAGIMAIAK--GCPELNYLDVSVLQNLGDQAMVELGKGCPLLKDVVL 372 (448)
Q Consensus 302 ~~~~~~~l~-------~~~~L~~L~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l 372 (448)
.......+. ++++|+.|+++++ .++. +..... .+++|+.|++++| .++. +..-...+++|++|++
T Consensus 710 ~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~--lp~~l~~~~l~~L~~L~Ls~N-~L~~--lp~~l~~L~~L~~L~L 783 (876)
T 4ecn_A 710 TSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTS--LSDDFRATTLPYLSNMDVSYN-CFSS--FPTQPLNSSQLKAFGI 783 (876)
T ss_dssp SCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCC--CCGGGSTTTCTTCCEEECCSS-CCSS--CCCGGGGCTTCCEEEC
T ss_pred CccChHHhccccccccccCCccEEECCCC-CCcc--chHHhhhccCCCcCEEEeCCC-CCCc--cchhhhcCCCCCEEEC
Confidence 321111111 1115777777764 4442 222222 5677777777776 3433 2212235777777777
Q ss_pred cCCC-----CCChHHHHHHHHcCccCceEeccCCCCCCHHHHHHHHhcCccceEEEEeeeeecc
Q 013172 373 SHCR-----QITDVGLSHLVKNCRMLESCHMVYCPGITAAGVATVVSGCANIKKVMVEKWKVSE 431 (448)
Q Consensus 373 ~~c~-----~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 431 (448)
+++. .+.......+ ..+++|+.|++++|.. +. ++.. -.++|+.|++++|++..
T Consensus 784 s~N~~ls~N~l~~~ip~~l-~~L~~L~~L~Ls~N~L-~~--Ip~~--l~~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 784 RHQRDAEGNRILRQWPTGI-TTCPSLIQLQIGSNDI-RK--VDEK--LTPQLYILDIADNPNIS 841 (876)
T ss_dssp CCCBCTTCCBCCCCCCTTG-GGCSSCCEEECCSSCC-CB--CCSC--CCSSSCEEECCSCTTCE
T ss_pred CCCCCcccccccccChHHH-hcCCCCCEEECCCCCC-Cc--cCHh--hcCCCCEEECCCCCCCc
Confidence 6522 2222211222 3477777777777753 21 1111 12577777777776543
No 34
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.83 E-value=9.1e-23 Score=205.89 Aligned_cols=400 Identities=16% Similarity=0.110 Sum_probs=209.2
Q ss_pred eeEEEeeeec-cccccccccchhccccCCcceeeeccccccChhHHHHHHhhhCCCccEEEeccCCccChhhHH-HHHhc
Q 013172 3 KLVLNFGFCK-GCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLE-AVGSH 80 (448)
Q Consensus 3 ~~~L~~s~~~-~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~ 80 (448)
..+||++.|. ...+....+ ..+++|++|+|+++ .+.......+ ..+ ++|++|++++|. ++...+. .....
T Consensus 50 L~~LdLs~n~~~~~i~~~~f----~~L~~L~~L~Ls~N-~l~~~~p~~~-~~l-~~L~~L~Ls~n~-l~~~~~~~~~~~~ 121 (844)
T 3j0a_A 50 LQLLELGSQYTPLTIDKEAF----RNLPNLRILDLGSS-KIYFLHPDAF-QGL-FHLFELRLYFCG-LSDAVLKDGYFRN 121 (844)
T ss_dssp CSEEEECTTCCCCEECTTTT----SSCTTCCEEECTTC-CCCEECTTSS-CSC-SSCCCEECTTCC-CSSCCSTTCCCSS
T ss_pred CeEEeCCCCCCccccCHHHh----cCCCCCCEEECCCC-cCcccCHhHc-cCC-cccCEeeCcCCC-CCcccccCccccc
Confidence 4578998873 233433333 45589999999988 4443222222 233 789999999985 4432222 22357
Q ss_pred CCCCceeeccccccchhhHHHHhhcCCcccEEEeeccCCCcHHHHHHHh-hccccccccccccccCChhHHHHHhhcCC-
Q 013172 81 CKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGN-QCLSLELLALYSFQQFTDKGLHAVGKGCK- 158 (448)
Q Consensus 81 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~- 158 (448)
+++|++|++++|.+........+..+++|++|+++++.+.......+.. ..++|+.|+++++. +....... ...++
T Consensus 122 L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~-l~~~~~~~-~~~~~~ 199 (844)
T 3j0a_A 122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANS-LYSRVSVD-WGKCMN 199 (844)
T ss_dssp CSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSB-SCCCCCCC-CCSSSC
T ss_pred cCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCc-cccccccc-hhhcCC
Confidence 8999999999998876555445567999999999988775432222221 01678888877643 22111000 00111
Q ss_pred -----CCCEEeecCCccCChhhHHHH-----------------------------------Hhc--CCCCcEEEecCCCC
Q 013172 159 -----KLKNLTLSDCYFLSDMGLEAI-----------------------------------ATG--CKELTHLEINGCHN 196 (448)
Q Consensus 159 -----~L~~L~l~~~~~~~~~~~~~~-----------------------------------~~~--~~~L~~L~l~~~~~ 196 (448)
+|+.|+++++. +.......+ ... .++|+.|+++++.
T Consensus 200 ~~~~~~L~~L~Ls~n~-l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~- 277 (844)
T 3j0a_A 200 PFRNMVLEILDVSGNG-WTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGF- 277 (844)
T ss_dssp TTTTCCBSEEBCSSCC-SSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCC-
T ss_pred ccccCceeEEecCCCc-CchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCc-
Confidence 37777777663 111000000 001 2577888887643
Q ss_pred CChhhHHHHhhcCCCcceEecccccccCchhHHHHhccCcCCceEeccCCcCcChHHHHHHHHhCCCCcEEEcccccccc
Q 013172 197 IGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIG 276 (448)
Q Consensus 197 ~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 276 (448)
+..... .....+++|+.|+++++ .+..... ..+..+++|+.|+++++. +..... ..+..+++|+.|+++++ .+.
T Consensus 278 l~~~~~-~~~~~l~~L~~L~L~~n-~i~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L~L~~N-~i~ 351 (844)
T 3j0a_A 278 VFSLNS-RVFETLKDLKVLNLAYN-KINKIAD-EAFYGLDNLQVLNLSYNL-LGELYS-SNFYGLPKVAYIDLQKN-HIA 351 (844)
T ss_dssp CCEECS-CCSSSCCCCCEEEEESC-CCCEECT-TTTTTCSSCCEEEEESCC-CSCCCS-CSCSSCTTCCEEECCSC-CCC
T ss_pred ccccCh-hhhhcCCCCCEEECCCC-cCCCCCh-HHhcCCCCCCEEECCCCC-CCccCH-HHhcCCCCCCEEECCCC-CCC
Confidence 332211 12233578888888773 3333221 223457788888888753 221111 11234677888888775 343
Q ss_pred CchHhHhhhcCCCCcEEeccccCCcCchHHHhhccCCCccEEeeeCc-------------------cccChHHHHHHHhh
Q 013172 277 NNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGC-------------------HQIGDAGIMAIAKG 337 (448)
Q Consensus 277 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-------------------~~~~~~~~~~~~~~ 337 (448)
..... ....+++|++|+++++. +.. +...++|+.|.++++ +.++..........
T Consensus 352 ~~~~~-~~~~l~~L~~L~Ls~N~-l~~-----i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~ 424 (844)
T 3j0a_A 352 IIQDQ-TFKFLEKLQTLDLRDNA-LTT-----IHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLR 424 (844)
T ss_dssp CCCSS-CSCSCCCCCEEEEETCC-SCC-----CSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTT
T ss_pred ccChh-hhcCCCCCCEEECCCCC-CCc-----ccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhc
Confidence 32211 22456778888887743 321 111334455444442 22333222333446
Q ss_pred CCCCCEEeccCcCCCCHHHHHHHhcCCCCCcEEeccCCCCCChHH----HHHHHHcCccCceEeccCCCCCCHHHHHHHH
Q 013172 338 CPELNYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSHCRQITDVG----LSHLVKNCRMLESCHMVYCPGITAAGVATVV 413 (448)
Q Consensus 338 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~----~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~ 413 (448)
+++|+.|++++| .++..........+++|++|+++++ .++... ....+..+++|+.|++++|. ++.. .+..+
T Consensus 425 l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~-~~~~~ 500 (844)
T 3j0a_A 425 VPHLQILILNQN-RFSSCSGDQTPSENPSLEQLFLGEN-MLQLAWETELCWDVFEGLSHLQVLYLNHNY-LNSL-PPGVF 500 (844)
T ss_dssp CTTCCEEEEESC-CCCCCCSSSSSCSCTTCCBCEEESC-CCSSSCCSCCCSSCSSCBCCEECCCCCHHH-HTTC-CTTSS
T ss_pred CCccceeeCCCC-cccccccccccccCCccccccCCCC-ccccccccccchhhhcCcccccEEECCCCc-cccc-ChhHc
Confidence 778888888777 3332111112234677777777763 333110 00111234555555555542 2110 01123
Q ss_pred hcCccceEEEEeeeeecc
Q 013172 414 SGCANIKKVMVEKWKVSE 431 (448)
Q Consensus 414 ~~~~~L~~L~l~~~~~~~ 431 (448)
..+++|+.|++++|+++.
T Consensus 501 ~~l~~L~~L~Ls~N~l~~ 518 (844)
T 3j0a_A 501 SHLTALRGLSLNSNRLTV 518 (844)
T ss_dssp SSCCSCSEEEEESCCCSS
T ss_pred cchhhhheeECCCCCCCc
Confidence 455666666666666543
No 35
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.82 E-value=2e-20 Score=174.91 Aligned_cols=224 Identities=17% Similarity=0.048 Sum_probs=140.2
Q ss_pred ccCCcceeeeccccccChhHHHHHHhhhCCCccEEEeccCCccChhhHHHHHhcCCCCceeeccccccchhhHHHHhhcC
Q 013172 27 VCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGC 106 (448)
Q Consensus 27 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 106 (448)
.+++|++|+++++ .+.+.. . +..+ ++|++|++++|. ++... ...+++|++|++++|.++... +..+
T Consensus 40 ~l~~L~~L~Ls~n-~l~~~~--~-l~~l-~~L~~L~Ls~n~-l~~~~----~~~l~~L~~L~Ls~N~l~~~~----~~~l 105 (457)
T 3bz5_A 40 QLATLTSLDCHNS-SITDMT--G-IEKL-TGLTKLICTSNN-ITTLD----LSQNTNLTYLACDSNKLTNLD----VTPL 105 (457)
T ss_dssp HHTTCCEEECCSS-CCCCCT--T-GGGC-TTCSEEECCSSC-CSCCC----CTTCTTCSEEECCSSCCSCCC----CTTC
T ss_pred HcCCCCEEEccCC-CcccCh--h-hccc-CCCCEEEccCCc-CCeEc----cccCCCCCEEECcCCCCceee----cCCC
Confidence 3478888888877 444332 2 2233 688888888875 44432 356788888888888776542 3457
Q ss_pred CcccEEEeeccCCCcHHHHHHHhhccccccccccccccCChhHHHHHhhcCCCCCEEeecCCccCChhhHHHHHhcCCCC
Q 013172 107 PLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKEL 186 (448)
Q Consensus 107 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 186 (448)
++|++|+++++.+.... ...+++|++|+++++. +... + ...+++|+.|+++++..+.... ...+++|
T Consensus 106 ~~L~~L~L~~N~l~~l~----~~~l~~L~~L~l~~N~-l~~l--~--l~~l~~L~~L~l~~n~~~~~~~----~~~l~~L 172 (457)
T 3bz5_A 106 TKLTYLNCDTNKLTKLD----VSQNPLLTYLNCARNT-LTEI--D--VSHNTQLTELDCHLNKKITKLD----VTPQTQL 172 (457)
T ss_dssp TTCCEEECCSSCCSCCC----CTTCTTCCEEECTTSC-CSCC--C--CTTCTTCCEEECTTCSCCCCCC----CTTCTTC
T ss_pred CcCCEEECCCCcCCeec----CCCCCcCCEEECCCCc-ccee--c--cccCCcCCEEECCCCCcccccc----cccCCcC
Confidence 88888888887776532 2347888888887643 3321 1 3457888888888875444332 2357788
Q ss_pred cEEEecCCCCCChhhHHHHhhcCCCcceEecccccccCchhHHHHhccCcCCceEeccCCcCcChHHHHHHHHhCCCCcE
Q 013172 187 THLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKK 266 (448)
Q Consensus 187 ~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 266 (448)
+.|+++++ .+.... ...+++|+.|+++++ .+.... +..+++|+.|+++++. +.... ...+++|+.
T Consensus 173 ~~L~ls~n-~l~~l~----l~~l~~L~~L~l~~N-~l~~~~----l~~l~~L~~L~Ls~N~-l~~ip----~~~l~~L~~ 237 (457)
T 3bz5_A 173 TTLDCSFN-KITELD----VSQNKLLNRLNCDTN-NITKLD----LNQNIQLTFLDCSSNK-LTEID----VTPLTQLTY 237 (457)
T ss_dssp CEEECCSS-CCCCCC----CTTCTTCCEEECCSS-CCSCCC----CTTCTTCSEEECCSSC-CSCCC----CTTCTTCSE
T ss_pred CEEECCCC-ccceec----cccCCCCCEEECcCC-cCCeec----cccCCCCCEEECcCCc-ccccC----ccccCCCCE
Confidence 88888874 343322 233578888888774 344332 3567888888888753 43321 345788888
Q ss_pred EEccccccccCchHhHhhhcCCCCcEEeccc
Q 013172 267 LHIRRCYKIGNNGIVAVGEHCNSLTELSLRF 297 (448)
Q Consensus 267 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 297 (448)
|+++++. ++... ...+++|+.|++++
T Consensus 238 L~l~~N~-l~~~~----~~~l~~L~~L~l~~ 263 (457)
T 3bz5_A 238 FDCSVNP-LTELD----VSTLSKLTTLHCIQ 263 (457)
T ss_dssp EECCSSC-CSCCC----CTTCTTCCEEECTT
T ss_pred EEeeCCc-CCCcC----HHHCCCCCEEeccC
Confidence 8888753 44332 22456666555543
No 36
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.82 E-value=3.1e-20 Score=173.52 Aligned_cols=296 Identities=18% Similarity=0.116 Sum_probs=173.0
Q ss_pred CCccEEEeccCCccChhhHHHHHhcCCCCceeeccccccchhhHHHHhhcCCcccEEEeeccCCCcHHHHHHHhhccccc
Q 013172 56 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLE 135 (448)
Q Consensus 56 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 135 (448)
++|++|+++++. ++... . ...+++|++|++++|.++... +..+++|++|+++++.+.... ...+++|+
T Consensus 42 ~~L~~L~Ls~n~-l~~~~--~-l~~l~~L~~L~Ls~n~l~~~~----~~~l~~L~~L~Ls~N~l~~~~----~~~l~~L~ 109 (457)
T 3bz5_A 42 ATLTSLDCHNSS-ITDMT--G-IEKLTGLTKLICTSNNITTLD----LSQNTNLTYLACDSNKLTNLD----VTPLTKLT 109 (457)
T ss_dssp TTCCEEECCSSC-CCCCT--T-GGGCTTCSEEECCSSCCSCCC----CTTCTTCSEEECCSSCCSCCC----CTTCTTCC
T ss_pred CCCCEEEccCCC-cccCh--h-hcccCCCCEEEccCCcCCeEc----cccCCCCCEEECcCCCCceee----cCCCCcCC
Confidence 678888888874 44332 2 356788888888888776542 345778888888887776542 23478888
Q ss_pred cccccccccCChhHHHHHhhcCCCCCEEeecCCccCChhhHHHHHhcCCCCcEEEecCCCCCChhhHHHHhhcCCCcceE
Q 013172 136 LLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTEL 215 (448)
Q Consensus 136 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L 215 (448)
+|+++++. +... + ...+++|+.|+++++. +.... ...+++|+.|++.++..+.... ...+++|+.|
T Consensus 110 ~L~L~~N~-l~~l--~--~~~l~~L~~L~l~~N~-l~~l~----l~~l~~L~~L~l~~n~~~~~~~----~~~l~~L~~L 175 (457)
T 3bz5_A 110 YLNCDTNK-LTKL--D--VSQNPLLTYLNCARNT-LTEID----VSHNTQLTELDCHLNKKITKLD----VTPQTQLTTL 175 (457)
T ss_dssp EEECCSSC-CSCC--C--CTTCTTCCEEECTTSC-CSCCC----CTTCTTCCEEECTTCSCCCCCC----CTTCTTCCEE
T ss_pred EEECCCCc-CCee--c--CCCCCcCCEEECCCCc-cceec----cccCCcCCEEECCCCCcccccc----cccCCcCCEE
Confidence 88887643 3322 1 3467888888888875 33322 3357788888888765444432 2234788888
Q ss_pred ecccccccCchhHHHHhccCcCCceEeccCCcCcChHHHHHHHHhCCCCcEEEccccccccCchHhHhhhcCCCCcEEec
Q 013172 216 ALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSL 295 (448)
Q Consensus 216 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 295 (448)
+++++ .+...+ ...+++|+.|+++++. +.... ...+++|+.|+++++. ++... ...+++|+.|++
T Consensus 176 ~ls~n-~l~~l~----l~~l~~L~~L~l~~N~-l~~~~----l~~l~~L~~L~Ls~N~-l~~ip----~~~l~~L~~L~l 240 (457)
T 3bz5_A 176 DCSFN-KITELD----VSQNKLLNRLNCDTNN-ITKLD----LNQNIQLTFLDCSSNK-LTEID----VTPLTQLTYFDC 240 (457)
T ss_dssp ECCSS-CCCCCC----CTTCTTCCEEECCSSC-CSCCC----CTTCTTCSEEECCSSC-CSCCC----CTTCTTCSEEEC
T ss_pred ECCCC-ccceec----cccCCCCCEEECcCCc-CCeec----cccCCCCCEEECcCCc-ccccC----ccccCCCCEEEe
Confidence 88874 344432 4567888888888753 33321 3447788888888753 44422 345788888888
Q ss_pred cccCCcCchHHHhhccCC-------CccEEeeeCccccChHHHHHHHhhCCCCCEEeccCcCCCCHHHH-----HH-Hhc
Q 013172 296 RFCDRVGDEALISIGQGC-------SLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAM-----VE-LGK 362 (448)
Q Consensus 296 ~~~~~~~~~~~~~l~~~~-------~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-----~~-~~~ 362 (448)
+++. +.......+..+. +|+.|+++++....... ...+++|+.|++++|..+..... .. -..
T Consensus 241 ~~N~-l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~----~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~ 315 (457)
T 3bz5_A 241 SVNP-LTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ----AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLS 315 (457)
T ss_dssp CSSC-CSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE----CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCT
T ss_pred eCCc-CCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc----ccccccCCEEECCCCcccceeccCCCcceEechh
Confidence 8753 4433222222111 23444444433222211 12467777777777643221110 00 012
Q ss_pred CCCCCcEEeccCCCCCChHHHHHHHHcCccCceEeccCCC
Q 013172 363 GCPLLKDVVLSHCRQITDVGLSHLVKNCRMLESCHMVYCP 402 (448)
Q Consensus 363 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~ 402 (448)
.+++|++|++++ ++++... ...+++|+.|+++++.
T Consensus 316 ~~~~L~~L~L~~-N~l~~l~----l~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 316 QNPKLVYLYLNN-TELTELD----VSHNTKLKSLSCVNAH 350 (457)
T ss_dssp TCTTCCEEECTT-CCCSCCC----CTTCTTCSEEECCSSC
T ss_pred hcccCCEEECCC-Ccccccc----cccCCcCcEEECCCCC
Confidence 356677777766 3455432 2356777777776654
No 37
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.81 E-value=1.3e-20 Score=182.04 Aligned_cols=368 Identities=14% Similarity=0.047 Sum_probs=216.7
Q ss_pred eeEEEeeeeccccccccccchhccccCCcceeeeccccccChhHHHHHHhhhCCCccEEEeccCCccChhhHHHHHhcCC
Q 013172 3 KLVLNFGFCKGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCK 82 (448)
Q Consensus 3 ~~~L~~s~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 82 (448)
+.+|+++.|.+..+....+. .+++|++|+++++ .+.......+ ..+ ++|++|++++|. ++..... .++
T Consensus 54 L~~L~Ls~N~i~~~~~~~~~----~l~~L~~L~Ls~N-~l~~~~~~~~-~~l-~~L~~L~Ls~N~-l~~lp~~----~l~ 121 (562)
T 3a79_B 54 TKALSLSQNSISELRMPDIS----FLSELRVLRLSHN-RIRSLDFHVF-LFN-QDLEYLDVSHNR-LQNISCC----PMA 121 (562)
T ss_dssp CCEEECCSSCCCCCCGGGTT----TCTTCCEEECCSC-CCCEECTTTT-TTC-TTCCEEECTTSC-CCEECSC----CCT
T ss_pred cCEEECCCCCccccChhhhc----cCCCccEEECCCC-CCCcCCHHHh-CCC-CCCCEEECCCCc-CCccCcc----ccc
Confidence 46899999888776654443 4489999999988 4554322222 223 789999999985 5432222 589
Q ss_pred CCceeeccccccchhhHHHHhhcCCcccEEEeeccCCCcHHHHHHHhhcccc--cccccccccc----CCh---------
Q 013172 83 SLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSL--ELLALYSFQQ----FTD--------- 147 (448)
Q Consensus 83 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~----~~~--------- 147 (448)
+|++|++++|.+........+..+++|++|+++++.+....+.. +++| +.|+++++.- ...
T Consensus 122 ~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~----l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~ 197 (562)
T 3a79_B 122 SLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLP----VAHLHLSCILLDLVSYHIKGGETESLQIPNTT 197 (562)
T ss_dssp TCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGG----GTTSCEEEEEEEESSCCCCSSSCCEEEECCEE
T ss_pred cCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhh----hhhceeeEEEeecccccccccCcccccccCcc
Confidence 99999999998876444334456889999999988887543322 3444 7777765321 000
Q ss_pred -----------------------------------------hHHHHHhhcCCCCCEEeecCCccCChhhHHHHHh--cCC
Q 013172 148 -----------------------------------------KGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIAT--GCK 184 (448)
Q Consensus 148 -----------------------------------------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~~ 184 (448)
.+.......+++|+.+++.++. +....+..+.. ..+
T Consensus 198 ~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~-l~~~~~~~~~~~~~~~ 276 (562)
T 3a79_B 198 VLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIE-TTWKCSVKLFQFFWPR 276 (562)
T ss_dssp EEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEE-ECHHHHHHHHHHHTTS
T ss_pred eEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCc-CcHHHHHHHHHhhhcc
Confidence 0011111233444444443332 22211111111 123
Q ss_pred CCcEEEecCCCCC---Ch---------------------------hhHHHHhhcCCCcceEecccccccCchhHHHHhcc
Q 013172 185 ELTHLEINGCHNI---GT---------------------------MGLESIGKFCRNLTELALLYCQRIGNLALLEVGRG 234 (448)
Q Consensus 185 ~L~~L~l~~~~~~---~~---------------------------~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 234 (448)
+|++|++.++... .. ..+..+... ++|+.|+++++. +.... ....
T Consensus 277 ~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~-~~L~~L~l~~n~-~~~~~---~~~~ 351 (562)
T 3a79_B 277 PVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAE-MNIKMLSISDTP-FIHMV---CPPS 351 (562)
T ss_dssp SEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHT-CCCSEEEEESSC-CCCCC---CCSS
T ss_pred cccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhcc-CcceEEEccCCC-ccccc---CccC
Confidence 5555555543211 00 111111111 345555555532 21111 0146
Q ss_pred CcCCceEeccCCcCcChHHHHHHHHhCCCCcEEEccccccccC-chHhHhhhcCCCCcEEeccccCCcCc-hHHHhhccC
Q 013172 235 CKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGN-NGIVAVGEHCNSLTELSLRFCDRVGD-EALISIGQG 312 (448)
Q Consensus 235 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~l~~~ 312 (448)
+++|++|+++++. +..... .....+++|+.|+++++. ++. .........+++|++|+++++. +.. .....+...
T Consensus 352 l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~l 427 (562)
T 3a79_B 352 PSSFTFLNFTQNV-FTDSVF-QGCSTLKRLQTLILQRNG-LKNFFKVALMTKNMSSLETLDVSLNS-LNSHAYDRTCAWA 427 (562)
T ss_dssp CCCCCEEECCSSC-CCTTTT-TTCCSCSSCCEEECCSSC-CCBTTHHHHTTTTCTTCCEEECTTSC-CBSCCSSCCCCCC
T ss_pred CCCceEEECCCCc-cccchh-hhhcccCCCCEEECCCCC-cCCcccchhhhcCCCCCCEEECCCCc-CCCccChhhhcCc
Confidence 7899999999853 443222 222458999999999864 443 2334445678999999999864 433 222335556
Q ss_pred CCccEEeeeCccccChHHHHHHHhhC-CCCCEEeccCcCCCCHHHHHHHhcCCCCCcEEeccCCCCCChHHHHHHHHcCc
Q 013172 313 CSLQHLNVSGCHQIGDAGIMAIAKGC-PELNYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSHCRQITDVGLSHLVKNCR 391 (448)
Q Consensus 313 ~~L~~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~ 391 (448)
++|+.|+++++ .++... ...+ ++|+.|++++| .++. +..-...+++|++|+++++ .++..... ....++
T Consensus 428 ~~L~~L~l~~n-~l~~~~----~~~l~~~L~~L~L~~N-~l~~--ip~~~~~l~~L~~L~L~~N-~l~~l~~~-~~~~l~ 497 (562)
T 3a79_B 428 ESILVLNLSSN-MLTGSV----FRCLPPKVKVLDLHNN-RIMS--IPKDVTHLQALQELNVASN-QLKSVPDG-VFDRLT 497 (562)
T ss_dssp TTCCEEECCSS-CCCGGG----GSSCCTTCSEEECCSS-CCCC--CCTTTTSSCCCSEEECCSS-CCCCCCTT-STTTCT
T ss_pred ccCCEEECCCC-CCCcch----hhhhcCcCCEEECCCC-cCcc--cChhhcCCCCCCEEECCCC-CCCCCCHH-HHhcCC
Confidence 78999999985 455422 2234 69999999998 5552 2111226899999999994 57753332 234689
Q ss_pred cCceEeccCCCCCCH
Q 013172 392 MLESCHMVYCPGITA 406 (448)
Q Consensus 392 ~L~~L~l~~c~~~~~ 406 (448)
+|+.|++++|+...+
T Consensus 498 ~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 498 SLQYIWLHDNPWDCT 512 (562)
T ss_dssp TCCCEECCSCCBCCC
T ss_pred CCCEEEecCCCcCCC
Confidence 999999999986543
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.80 E-value=2.4e-20 Score=171.76 Aligned_cols=141 Identities=15% Similarity=0.140 Sum_probs=72.1
Q ss_pred CCCCcEEEccccccccCchHhHhhhcCCCCcEEeccccCCcCchHHHhhccCCCccEEeeeCccccChHHHHHHHhhCCC
Q 013172 261 CQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPE 340 (448)
Q Consensus 261 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 340 (448)
.++|+.|++.++. ++.. .....+++|++|+++++ .+.......+...++|+.|+++++ .++.. ......+++
T Consensus 225 ~~~L~~L~l~~n~-l~~~---~~l~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~--~~~~~~l~~ 296 (390)
T 3o6n_A 225 NVELTILKLQHNN-LTDT---AWLLNYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNN-RLVAL--NLYGQPIPT 296 (390)
T ss_dssp CSSCCEEECCSSC-CCCC---GGGGGCTTCSEEECCSS-CCCEEESGGGTTCSSCCEEECCSS-CCCEE--ECSSSCCTT
T ss_pred cccccEEECCCCC-Cccc---HHHcCCCCccEEECCCC-cCCCcChhHccccccCCEEECCCC-cCccc--CcccCCCCC
Confidence 3456666666642 3322 12234666666666664 344444445555556666666663 33321 111134567
Q ss_pred CCEEeccCcCCCCHHHHHHHhcCCCCCcEEeccCCCCCChHHHHHHHHcCccCceEeccCCCCCCHHHHHHHHhcCcc
Q 013172 341 LNYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSHCRQITDVGLSHLVKNCRMLESCHMVYCPGITAAGVATVVSGCAN 418 (448)
Q Consensus 341 L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~ 418 (448)
|+.|++++| .+..... . ...+++|++|+++++ .++... ...+++|+.|++++|+ ++.......+..++.
T Consensus 297 L~~L~L~~n-~l~~~~~-~-~~~l~~L~~L~L~~N-~i~~~~----~~~~~~L~~L~l~~N~-~~~~~~~~~~~~~~~ 365 (390)
T 3o6n_A 297 LKVLDLSHN-HLLHVER-N-QPQFDRLENLYLDHN-SIVTLK----LSTHHTLKNLTLSHND-WDCNSLRALFRNVAR 365 (390)
T ss_dssp CCEEECCSS-CCCCCGG-G-HHHHTTCSEEECCSS-CCCCCC----CCTTCCCSEEECCSSC-EEHHHHHHHTTTCCT
T ss_pred CCEEECCCC-cceecCc-c-ccccCcCCEEECCCC-ccceeC----chhhccCCEEEcCCCC-ccchhHHHHHHHHHh
Confidence 777777766 3332110 0 123567777777764 355433 2346677777777765 444444444444333
No 39
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.80 E-value=9e-18 Score=154.27 Aligned_cols=103 Identities=14% Similarity=0.100 Sum_probs=62.0
Q ss_pred cccCCcceeeeccccccChhHHHHHHhhh--CCCccEEEeccCC--ccChh---hHH---HHHhcCCCCceeeccccccc
Q 013172 26 KVCNQLEDLNLRFCEGLTDTGLVDLAHGC--GKSLKSLGIAACV--KITDV---SLE---AVGSHCKSLETLSLDSEFIH 95 (448)
Q Consensus 26 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--~~~L~~L~l~~~~--~~~~~---~~~---~~~~~~~~L~~L~l~~~~~~ 95 (448)
+.+++|++|+++++ .+...+...+...+ .++|++|++++|. .++.. .+. .....+++|++|++++|.++
T Consensus 29 ~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 29 LEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp HHCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred hcCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 44577888888877 56666555544321 2678888887762 22222 221 11246678888888887776
Q ss_pred hhhH---HHHhhcCCcccEEEeeccCCCcHHHHHHHh
Q 013172 96 NKGV---HAVAQGCPLLRVLKLQCINVTDEALVAVGN 129 (448)
Q Consensus 96 ~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 129 (448)
..+. ...+..+++|++|++++|.+++.....+..
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~ 144 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR 144 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHH
Confidence 6432 223345777888888777776555544443
No 40
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.79 E-value=6.2e-20 Score=169.01 Aligned_cols=324 Identities=15% Similarity=0.079 Sum_probs=219.6
Q ss_pred cCCcceeeeccccccChhHHHHHHhhhCCCccEEEeccCCccChhhHHHHHhcCCCCceeeccccccchhhHHHHhhcCC
Q 013172 28 CNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCP 107 (448)
Q Consensus 28 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 107 (448)
.++++.|+++++ .+..... .++..+ ++|++|+++++. ++......+ ..+++|++|++++|.+....... +..++
T Consensus 44 l~~l~~l~l~~~-~l~~l~~-~~~~~l-~~L~~L~L~~n~-i~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~-~~~l~ 117 (390)
T 3o6n_A 44 LNNQKIVTFKNS-TMRKLPA-ALLDSF-RQVELLNLNDLQ-IEEIDTYAF-AYAHTIQKLYMGFNAIRYLPPHV-FQNVP 117 (390)
T ss_dssp GCCCSEEEEESC-EESEECT-HHHHHC-CCCSEEECTTSC-CCEECTTTT-TTCTTCCEEECCSSCCCCCCTTT-TTTCT
T ss_pred cCCceEEEecCC-chhhCCh-hHhccc-ccCcEEECCCCc-ccccChhhc-cCCCCcCEEECCCCCCCcCCHHH-hcCCC
Confidence 489999999987 4444332 223344 899999999985 554433333 56899999999999887644333 34689
Q ss_pred cccEEEeeccCCCcHHHHHHHhhccccccccccccccCChhHHHHHhhcCCCCCEEeecCCccCChhhHHHHHhcCCCCc
Q 013172 108 LLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELT 187 (448)
Q Consensus 108 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 187 (448)
+|++|+++++.+...... +...+++|++|+++++. +... .+..+..+++|+.|+++++. +.... ...+++|+
T Consensus 118 ~L~~L~L~~n~l~~l~~~-~~~~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~----~~~l~~L~ 189 (390)
T 3o6n_A 118 LLTVLVLERNDLSSLPRG-IFHNTPKLTTLSMSNNN-LERI-EDDTFQATTSLQNLQLSSNR-LTHVD----LSLIPSLF 189 (390)
T ss_dssp TCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSC-CCBC-CTTTTSSCTTCCEEECCSSC-CSBCC----GGGCTTCS
T ss_pred CCCEEECCCCccCcCCHH-HhcCCCCCcEEECCCCc-cCcc-ChhhccCCCCCCEEECCCCc-CCccc----cccccccc
Confidence 999999999988743322 22448999999998753 3221 12224567999999999986 44432 33589999
Q ss_pred EEEecCCCCCChhhHHHHhhcCCCcceEecccccccCchhHHHHhccCcCCceEeccCCcCcChHHHHHHHHhCCCCcEE
Q 013172 188 HLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKL 267 (448)
Q Consensus 188 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 267 (448)
.|++.++ .+... ...++|++|+++++ .+..... ...++|+.|+++++. +.+. .....+++|++|
T Consensus 190 ~L~l~~n-~l~~~------~~~~~L~~L~l~~n-~l~~~~~----~~~~~L~~L~l~~n~-l~~~---~~l~~l~~L~~L 253 (390)
T 3o6n_A 190 HANVSYN-LLSTL------AIPIAVEELDASHN-SINVVRG----PVNVELTILKLQHNN-LTDT---AWLLNYPGLVEV 253 (390)
T ss_dssp EEECCSS-CCSEE------ECCSSCSEEECCSS-CCCEEEC----CCCSSCCEEECCSSC-CCCC---GGGGGCTTCSEE
T ss_pred eeecccc-ccccc------CCCCcceEEECCCC-eeeeccc----cccccccEEECCCCC-Cccc---HHHcCCCCccEE
Confidence 9999884 33332 12378999999984 3433221 235799999999964 4432 234568999999
Q ss_pred EccccccccCchHhHhhhcCCCCcEEeccccCCcCchHHHhhccCCCccEEeeeCccccChHHHHHHHhhCCCCCEEecc
Q 013172 268 HIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVS 347 (448)
Q Consensus 268 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 347 (448)
+++++. ++..... ....+++|++|+++++ .+.... ......++|+.|+++++ .++.. ......+++|+.|+++
T Consensus 254 ~Ls~n~-l~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~-~~~~~l~~L~~L~L~~n-~l~~~--~~~~~~l~~L~~L~L~ 326 (390)
T 3o6n_A 254 DLSYNE-LEKIMYH-PFVKMQRLERLYISNN-RLVALN-LYGQPIPTLKVLDLSHN-HLLHV--ERNQPQFDRLENLYLD 326 (390)
T ss_dssp ECCSSC-CCEEESG-GGTTCSSCCEEECCSS-CCCEEE-CSSSCCTTCCEEECCSS-CCCCC--GGGHHHHTTCSEEECC
T ss_pred ECCCCc-CCCcChh-HccccccCCEEECCCC-cCcccC-cccCCCCCCCEEECCCC-cceec--CccccccCcCCEEECC
Confidence 999863 4433222 3346899999999995 354322 22345578999999986 45432 1122357999999999
Q ss_pred CcCCCCHHHHHHHhcCCCCCcEEeccCCCCCChHHHHHHHHcCccCc
Q 013172 348 VLQNLGDQAMVELGKGCPLLKDVVLSHCRQITDVGLSHLVKNCRMLE 394 (448)
Q Consensus 348 ~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~ 394 (448)
+|+ ++... ...+++|++|+++++ .++......+...+++..
T Consensus 327 ~N~-i~~~~----~~~~~~L~~L~l~~N-~~~~~~~~~~~~~~~~~~ 367 (390)
T 3o6n_A 327 HNS-IVTLK----LSTHHTLKNLTLSHN-DWDCNSLRALFRNVARPA 367 (390)
T ss_dssp SSC-CCCCC----CCTTCCCSEEECCSS-CEEHHHHHHHTTTCCTTT
T ss_pred CCc-cceeC----chhhccCCEEEcCCC-CccchhHHHHHHHHHhhc
Confidence 984 54432 356899999999994 588777776665555433
No 41
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.79 E-value=2.4e-17 Score=151.37 Aligned_cols=210 Identities=15% Similarity=0.124 Sum_probs=120.0
Q ss_pred CCCcceEecccccccCch---hHHHHhccCcCCceEeccCCcCcChHHHHHHHH---hC---------CCCcEEEccccc
Q 013172 209 CRNLTELALLYCQRIGNL---ALLEVGRGCKSLQALHLVDCSSIGDDAICSIAE---GC---------QNLKKLHIRRCY 273 (448)
Q Consensus 209 ~~~L~~L~l~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~---------~~L~~L~l~~~~ 273 (448)
+++|++|+++++ .+... .+...+..+++|++|++++|. +++.+...+.. .+ ++|++|+++++
T Consensus 93 ~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n- 169 (386)
T 2ca6_A 93 CPKLHTVRLSDN-AFGPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN- 169 (386)
T ss_dssp CTTCCEEECCSC-CCCTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS-
T ss_pred CCcccEEECCCC-cCCHHHHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC-
Confidence 466666666653 33332 223334456666666666643 33333222222 22 77777777775
Q ss_pred cccCchHhH---hhhcCCCCcEEeccccCCcCchHHH-----hhccCCCccEEeeeCccccChHHH---HHHHhhCCCCC
Q 013172 274 KIGNNGIVA---VGEHCNSLTELSLRFCDRVGDEALI-----SIGQGCSLQHLNVSGCHQIGDAGI---MAIAKGCPELN 342 (448)
Q Consensus 274 ~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~-----~l~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~~L~ 342 (448)
.+++.++.. ....+++|++|++++| .+++.++. .+...++|++|+++++ .+++.+. ...+..+++|+
T Consensus 170 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~~~l~~~~~L~ 247 (386)
T 2ca6_A 170 RLENGSMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIALKSWPNLR 247 (386)
T ss_dssp CCTGGGHHHHHHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGGGCTTCC
T ss_pred CCCcHHHHHHHHHHHhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCC-CCCcHHHHHHHHHHccCCCcC
Confidence 355444442 3345677888888775 45544322 3445567888888774 4554333 33345678888
Q ss_pred EEeccCcCCCCHHHHHHHhc-----CCCCCcEEeccCCCCCChHHHHHHH----HcCccCceEeccCCCCCCHHH--HHH
Q 013172 343 YLDVSVLQNLGDQAMVELGK-----GCPLLKDVVLSHCRQITDVGLSHLV----KNCRMLESCHMVYCPGITAAG--VAT 411 (448)
Q Consensus 343 ~L~l~~~~~l~~~~~~~~~~-----~~~~L~~L~l~~c~~l~~~~~~~~~----~~~~~L~~L~l~~c~~~~~~~--~~~ 411 (448)
.|++++| .+++.+...+.. .+++|++|++++| .++..++..+. ..+++|+.|++++|+ ++..+ +..
T Consensus 248 ~L~L~~n-~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~-l~~~~~~~~~ 324 (386)
T 2ca6_A 248 ELGLNDC-LLSARGAAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNR-FSEEDDVVDE 324 (386)
T ss_dssp EEECTTC-CCCHHHHHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSB-SCTTSHHHHH
T ss_pred EEECCCC-CCchhhHHHHHHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCc-CCcchhHHHH
Confidence 8888887 577665544432 2788888888874 47775333322 346888888888876 33322 344
Q ss_pred HHhcCccceEEEEee
Q 013172 412 VVSGCANIKKVMVEK 426 (448)
Q Consensus 412 ~~~~~~~L~~L~l~~ 426 (448)
+...+++++.+.+..
T Consensus 325 l~~~l~~~~~~~l~~ 339 (386)
T 2ca6_A 325 IREVFSTRGRGELDE 339 (386)
T ss_dssp HHHHHHHHTCCEECC
T ss_pred HHHHhhhcCcchhhh
Confidence 444556666555544
No 42
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.79 E-value=6.3e-21 Score=187.60 Aligned_cols=130 Identities=18% Similarity=0.099 Sum_probs=89.4
Q ss_pred eeEEEeeeeccccccccccchhccccCCcceeeeccccccChhHHHHHHhhhCCCccEEEeccCCccChhhHHHHHhcCC
Q 013172 3 KLVLNFGFCKGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCK 82 (448)
Q Consensus 3 ~~~L~~s~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 82 (448)
+.+||+|+|.+..+....+.. +++|++|+|+++ .+.......+ ..+ ++|++|++++|. ++..... ....++
T Consensus 54 ~~~LdLs~N~i~~l~~~~f~~----l~~L~~L~Ls~N-~i~~i~~~~f-~~L-~~L~~L~Ls~N~-l~~l~~~-~f~~L~ 124 (635)
T 4g8a_A 54 TKNLDLSFNPLRHLGSYSFFS----FPELQVLDLSRC-EIQTIEDGAY-QSL-SHLSTLILTGNP-IQSLALG-AFSGLS 124 (635)
T ss_dssp CCEEECTTSCCCEECTTTTTT----CTTCCEEECTTC-CCCEECTTTT-TTC-TTCCEEECTTCC-CCEECGG-GGTTCT
T ss_pred CCEEEeeCCCCCCCCHHHHhC----CCCCCEEECCCC-cCCCcChhHh-cCC-CCCCEEEccCCc-CCCCCHH-HhcCCC
Confidence 578999999988887666544 489999999988 4443221112 223 789999999985 5543332 235689
Q ss_pred CCceeeccccccchhhHHHHhhcCCcccEEEeeccCCCcHHHHHHHhhcccccccccccc
Q 013172 83 SLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSF 142 (448)
Q Consensus 83 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 142 (448)
+|++|++++|.++...... +..+++|++|++++|.+...........+++|++|+++++
T Consensus 125 ~L~~L~Ls~N~l~~l~~~~-~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N 183 (635)
T 4g8a_A 125 SLQKLVAVETNLASLENFP-IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 183 (635)
T ss_dssp TCCEEECTTSCCCCSTTCC-CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred CCCEEECCCCcCCCCChhh-hhcCcccCeeccccCccccCCCchhhccchhhhhhcccCc
Confidence 9999999998876543222 3458899999998887765433333345788999988764
No 43
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.78 E-value=2e-20 Score=185.89 Aligned_cols=320 Identities=13% Similarity=0.085 Sum_probs=159.4
Q ss_pred CCccEEEeccCCccChhhHHHHHhcCCCCceeeccccc-cch-hhHHHH------hhcCCcccEEEeeccCCCcHHHH-H
Q 013172 56 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEF-IHN-KGVHAV------AQGCPLLRVLKLQCINVTDEALV-A 126 (448)
Q Consensus 56 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~------~~~~~~L~~L~l~~~~~~~~~~~-~ 126 (448)
++|++|++++|.... ..+ .....+++|++|++++|. ++. .....+ ...+++|++|++++|.+.. .+. .
T Consensus 491 ~~L~~L~Ls~N~l~~-~iP-~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~-ip~~~ 567 (876)
T 4ecn_A 491 KDLTDVELYNCPNMT-QLP-DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE-FPASA 567 (876)
T ss_dssp TTCCEEEEESCTTCC-SCC-GGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCB-CCCHH
T ss_pred CCCCEEECcCCCCCc-cCh-HHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCc-cCChh
Confidence 567777777764222 222 223456777777777776 543 111111 1234577777777776662 211 1
Q ss_pred HHhhccccccccccccccCChhHHHHHhhcCCCCCEEeecCCccCChhhHHHHHhcCCC-CcEEEecCCCCCChhhHHHH
Q 013172 127 VGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKE-LTHLEINGCHNIGTMGLESI 205 (448)
Q Consensus 127 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~l 205 (448)
....+++|+.|+++++. +. .++ .+..+++|+.|+++++. +.. +......+++ |+.|+++++. +... ...
T Consensus 568 ~l~~L~~L~~L~Ls~N~-l~--~lp-~~~~L~~L~~L~Ls~N~-l~~--lp~~l~~l~~~L~~L~Ls~N~-L~~l--p~~ 637 (876)
T 4ecn_A 568 SLQKMVKLGLLDCVHNK-VR--HLE-AFGTNVKLTDLKLDYNQ-IEE--IPEDFCAFTDQVEGLGFSHNK-LKYI--PNI 637 (876)
T ss_dssp HHTTCTTCCEEECTTSC-CC--BCC-CCCTTSEESEEECCSSC-CSC--CCTTSCEECTTCCEEECCSSC-CCSC--CSC
T ss_pred hhhcCCCCCEEECCCCC-cc--cch-hhcCCCcceEEECcCCc-ccc--chHHHhhccccCCEEECcCCC-CCcC--chh
Confidence 22336777777777643 32 222 33456777777777765 221 2222334566 7777777643 3321 111
Q ss_pred hhcC--CCcceEecccccccCchh--HHHHhc--cCcCCceEeccCCcCcChHHHHHHHHhCCCCcEEEccccccccCch
Q 013172 206 GKFC--RNLTELALLYCQRIGNLA--LLEVGR--GCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNG 279 (448)
Q Consensus 206 ~~~~--~~L~~L~l~~~~~~~~~~--~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 279 (448)
.... ++|+.|+++++. +.... +..... ..++|+.|+++++. +.. ....+...+++|+.|+++++. ++...
T Consensus 638 ~~~~~~~~L~~L~Ls~N~-l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~-L~~-lp~~~~~~l~~L~~L~Ls~N~-L~~ip 713 (876)
T 4ecn_A 638 FNAKSVYVMGSVDFSYNK-IGSEGRNISCSMDDYKGINASTVTLSYNE-IQK-FPTELFATGSPISTIILSNNL-MTSIP 713 (876)
T ss_dssp CCTTCSSCEEEEECCSSC-TTTTSSSCSSCTTTCCCCCEEEEECCSSC-CCS-CCHHHHHTTCCCSEEECCSCC-CSCCC
T ss_pred hhccccCCCCEEECcCCc-CCCccccchhhhccccCCCcCEEEccCCc-CCc-cCHHHHccCCCCCEEECCCCc-CCccC
Confidence 1111 347777777642 22110 000001 23467777777643 332 122333456777777777652 33211
Q ss_pred HhHh------hhcCCCCcEEeccccCCcCchHHHhhc--cCCCccEEeeeCccccChHHHHHHHhhCCCCCEEeccCcC-
Q 013172 280 IVAV------GEHCNSLTELSLRFCDRVGDEALISIG--QGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQ- 350 (448)
Q Consensus 280 ~~~~------~~~~~~L~~L~l~~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~- 350 (448)
.... ..++++|++|+++++ .+.. ....+. .+++|+.|+++++ .++. +......+++|+.|++++|+
T Consensus 714 ~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~-lp~~l~~~~l~~L~~L~Ls~N-~L~~--lp~~l~~L~~L~~L~Ls~N~~ 788 (876)
T 4ecn_A 714 ENSLKPKDGNYKNTYLLTTIDLRFN-KLTS-LSDDFRATTLPYLSNMDVSYN-CFSS--FPTQPLNSSQLKAFGIRHQRD 788 (876)
T ss_dssp TTSSSCTTSCCTTGGGCCEEECCSS-CCCC-CCGGGSTTTCTTCCEEECCSS-CCSS--CCCGGGGCTTCCEEECCCCBC
T ss_pred hHHhccccccccccCCccEEECCCC-CCcc-chHHhhhccCCCcCEEEeCCC-CCCc--cchhhhcCCCCCEEECCCCCC
Confidence 1100 112337777777775 3442 223333 4566777777764 3433 22223356777777776532
Q ss_pred ----CCCHHHHHHHhcCCCCCcEEeccCCCCCChHHHHHHHHcCccCceEeccCCCC
Q 013172 351 ----NLGDQAMVELGKGCPLLKDVVLSHCRQITDVGLSHLVKNCRMLESCHMVYCPG 403 (448)
Q Consensus 351 ----~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~ 403 (448)
.+....... ...+++|++|++++|. +...+.. -+++|+.|++++|+.
T Consensus 789 ls~N~l~~~ip~~-l~~L~~L~~L~Ls~N~-L~~Ip~~----l~~~L~~LdLs~N~l 839 (876)
T 4ecn_A 789 AEGNRILRQWPTG-ITTCPSLIQLQIGSND-IRKVDEK----LTPQLYILDIADNPN 839 (876)
T ss_dssp TTCCBCCCCCCTT-GGGCSSCCEEECCSSC-CCBCCSC----CCSSSCEEECCSCTT
T ss_pred cccccccccChHH-HhcCCCCCEEECCCCC-CCccCHh----hcCCCCEEECCCCCC
Confidence 111111111 2346777777777743 4322211 135677777777763
No 44
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.77 E-value=1.8e-19 Score=174.98 Aligned_cols=105 Identities=16% Similarity=0.154 Sum_probs=44.7
Q ss_pred cCCCCcEEeccccCCcCchHHHhhccCCCccEEeeeCccccChHHHHHHHhhCCCCCEEeccCcCCCCHHHHHHHhcCCC
Q 013172 286 HCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCP 365 (448)
Q Consensus 286 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 365 (448)
.+++|++|+++++ .+.......+..+++|+.|+++++ .++.. ......+|+|+.|++++|. ++... .....++
T Consensus 252 ~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l--~~~~~~l~~L~~L~Ls~N~-l~~i~--~~~~~l~ 324 (597)
T 3oja_B 252 NYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNN-RLVAL--NLYGQPIPTLKVLDLSHNH-LLHVE--RNQPQFD 324 (597)
T ss_dssp GCTTCSEEECCSS-CCCEEESGGGTTCSSCCEEECTTS-CCCEE--ECSSSCCTTCCEEECCSSC-CCCCG--GGHHHHT
T ss_pred cCCCCCEEECCCC-ccCCCCHHHhcCccCCCEEECCCC-CCCCC--CcccccCCCCcEEECCCCC-CCccC--cccccCC
Confidence 3455555555553 243333344444445555555543 22221 1111234555555555552 22110 0012245
Q ss_pred CCcEEeccCCCCCChHHHHHHHHcCccCceEeccCCC
Q 013172 366 LLKDVVLSHCRQITDVGLSHLVKNCRMLESCHMVYCP 402 (448)
Q Consensus 366 ~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~ 402 (448)
+|++|++++|. ++... ...+++|+.|++++|+
T Consensus 325 ~L~~L~L~~N~-l~~~~----~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 325 RLENLYLDHNS-IVTLK----LSTHHTLKNLTLSHND 356 (597)
T ss_dssp TCSEEECCSSC-CCCCC----CCTTCCCSEEECCSSC
T ss_pred CCCEEECCCCC-CCCcC----hhhcCCCCEEEeeCCC
Confidence 55555555532 33322 1234555555555554
No 45
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.76 E-value=1.8e-19 Score=170.55 Aligned_cols=310 Identities=16% Similarity=0.093 Sum_probs=189.6
Q ss_pred CCcceeeeccccccChhHHHHHHhhhCCCccEEEeccCCccChhhHHHHHhcCCCCceeeccccccchhhHHHHhhcCCc
Q 013172 29 NQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPL 108 (448)
Q Consensus 29 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 108 (448)
++++.|+++++ .+.......+ ..+ ++|++|++++|. ++......+ ..+++|++|++++|.+...... .+..+++
T Consensus 32 ~~l~~L~L~~n-~l~~~~~~~~-~~l-~~L~~L~L~~n~-i~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~ 105 (477)
T 2id5_A 32 TETRLLDLGKN-RIKTLNQDEF-ASF-PHLEELELNENI-VSAVEPGAF-NNLFNLRTLGLRSNRLKLIPLG-VFTGLSN 105 (477)
T ss_dssp TTCSEEECCSS-CCCEECTTTT-TTC-TTCCEEECTTSC-CCEECTTTT-TTCTTCCEEECCSSCCCSCCTT-SSTTCTT
T ss_pred CCCcEEECCCC-ccceECHhHc-cCC-CCCCEEECCCCc-cCEeChhhh-hCCccCCEEECCCCcCCccCcc-cccCCCC
Confidence 57888888887 4443322222 223 788888888874 544333332 4678888888888877654322 2345788
Q ss_pred ccEEEeeccCCCcHHHHHHHhhccccccccccccccCChhHHHHHhhcCCCCCEEeecCCccCChhhHHHHHhcCCCCcE
Q 013172 109 LRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTH 188 (448)
Q Consensus 109 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 188 (448)
|++|++++|.+.......+ ..+++|++|+++++. +.... ...+..+++|+.|+++++. +..... .....+++|+.
T Consensus 106 L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~-~~l~~l~~L~~ 180 (477)
T 2id5_A 106 LTKLDISENKIVILLDYMF-QDLYNLKSLEVGDND-LVYIS-HRAFSGLNSLEQLTLEKCN-LTSIPT-EALSHLHGLIV 180 (477)
T ss_dssp CCEEECTTSCCCEECTTTT-TTCTTCCEEEECCTT-CCEEC-TTSSTTCTTCCEEEEESCC-CSSCCH-HHHTTCTTCCE
T ss_pred CCEEECCCCccccCChhHc-cccccCCEEECCCCc-cceeC-hhhccCCCCCCEEECCCCc-CcccCh-hHhcccCCCcE
Confidence 8888888887765433333 337888888887642 22211 1123457889999998875 433322 23446888999
Q ss_pred EEecCCCCCChhhHHHHhhcCCCcceEecccccccCchhHHHHhccCcCCceEeccCCcCcChHHHHHHHHhCCCCcEEE
Q 013172 189 LEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLH 268 (448)
Q Consensus 189 L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 268 (448)
|++.++. +....... ...+++|+.|+++++......... .....+|+.|+++++. +..... ..+..+++|+.|+
T Consensus 181 L~l~~n~-i~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~--~~~~~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~ 254 (477)
T 2id5_A 181 LRLRHLN-INAIRDYS-FKRLYRLKVLEISHWPYLDTMTPN--CLYGLNLTSLSITHCN-LTAVPY-LAVRHLVYLRFLN 254 (477)
T ss_dssp EEEESCC-CCEECTTC-SCSCTTCCEEEEECCTTCCEECTT--TTTTCCCSEEEEESSC-CCSCCH-HHHTTCTTCCEEE
T ss_pred EeCCCCc-CcEeChhh-cccCcccceeeCCCCccccccCcc--cccCccccEEECcCCc-ccccCH-HHhcCccccCeeE
Confidence 9988743 33322222 233588899988876544332211 1123588999998853 443222 2345588899999
Q ss_pred ccccccccCchHhHhhhcCCCCcEEeccccCCcCchHHHhhccCCCccEEeeeCccccChHHHHHHHhhCCCCCEEeccC
Q 013172 269 IRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSV 348 (448)
Q Consensus 269 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 348 (448)
++++. ++.... .....+++|++|+++++ .+.......+..+++|+.|+++++ .++.... ..+..+++|+.|++++
T Consensus 255 Ls~n~-l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~ 329 (477)
T 2id5_A 255 LSYNP-ISTIEG-SMLHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEE-SVFHSVGNLETLILDS 329 (477)
T ss_dssp CCSSC-CCEECT-TSCTTCTTCCEEECCSS-CCSEECTTTBTTCTTCCEEECCSS-CCSCCCG-GGBSCGGGCCEEECCS
T ss_pred CCCCc-CCccCh-hhccccccCCEEECCCC-ccceECHHHhcCcccCCEEECCCC-cCceeCH-hHcCCCcccCEEEccC
Confidence 98853 443222 22346788999999885 466655566777778999999885 4443211 1234568899999988
Q ss_pred cCCCCHHHHHHH
Q 013172 349 LQNLGDQAMVEL 360 (448)
Q Consensus 349 ~~~l~~~~~~~~ 360 (448)
|+...+-.+.++
T Consensus 330 N~l~c~c~~~~~ 341 (477)
T 2id5_A 330 NPLACDCRLLWV 341 (477)
T ss_dssp SCEECSGGGHHH
T ss_pred CCccCccchHhH
Confidence 864444333333
No 46
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.75 E-value=2.3e-19 Score=169.91 Aligned_cols=300 Identities=18% Similarity=0.148 Sum_probs=172.4
Q ss_pred CCccEEEeccCCccChhhHHHHHhcCCCCceeeccccccchhhHHHHhhcCCcccEEEeeccCCCcHHHHHHHhhccccc
Q 013172 56 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLE 135 (448)
Q Consensus 56 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 135 (448)
+++++|+++++. ++......+ ..+++|++|++++|.+.......+ ..+++|++|+++++.+.......+ ..+++|+
T Consensus 32 ~~l~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~ 107 (477)
T 2id5_A 32 TETRLLDLGKNR-IKTLNQDEF-ASFPHLEELELNENIVSAVEPGAF-NNLFNLRTLGLRSNRLKLIPLGVF-TGLSNLT 107 (477)
T ss_dssp TTCSEEECCSSC-CCEECTTTT-TTCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEECCSSCCCSCCTTSS-TTCTTCC
T ss_pred CCCcEEECCCCc-cceECHhHc-cCCCCCCEEECCCCccCEeChhhh-hCCccCCEEECCCCcCCccCcccc-cCCCCCC
Confidence 578888888764 444332222 457888888888877765433333 357788888887777664332222 3367888
Q ss_pred cccccccccCChhHHHHHhhcCCCCCEEeecCCccCChhhHHHHHhcCCCCcEEEecCCCCCChhhHHHHhhcCCCcceE
Q 013172 136 LLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTEL 215 (448)
Q Consensus 136 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L 215 (448)
+|+++++. +... .+..+..+++|++|+++++. +...... ....+++|+.|++.++ .+.......+. .+++|+.|
T Consensus 108 ~L~Ls~n~-i~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~~l~-~l~~L~~L 181 (477)
T 2id5_A 108 KLDISENK-IVIL-LDYMFQDLYNLKSLEVGDND-LVYISHR-AFSGLNSLEQLTLEKC-NLTSIPTEALS-HLHGLIVL 181 (477)
T ss_dssp EEECTTSC-CCEE-CTTTTTTCTTCCEEEECCTT-CCEECTT-SSTTCTTCCEEEEESC-CCSSCCHHHHT-TCTTCCEE
T ss_pred EEECCCCc-cccC-ChhHccccccCCEEECCCCc-cceeChh-hccCCCCCCEEECCCC-cCcccChhHhc-ccCCCcEE
Confidence 88887643 2211 12223456788888887765 2221111 1235678888888774 34433333333 35788888
Q ss_pred ecccccccCchhHHHHhccCcCCceEeccCCcCcChHHHHHHHHhCCCCcEEEccccccccCchHhHhhhcCCCCcEEec
Q 013172 216 ALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSL 295 (448)
Q Consensus 216 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 295 (448)
++.++ .+..... ..+..+++|+.|+++++........ .. ....+|++|+++++ .++..... ....+++|++|++
T Consensus 182 ~l~~n-~i~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~-~~-~~~~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~L 255 (477)
T 2id5_A 182 RLRHL-NINAIRD-YSFKRLYRLKVLEISHWPYLDTMTP-NC-LYGLNLTSLSITHC-NLTAVPYL-AVRHLVYLRFLNL 255 (477)
T ss_dssp EEESC-CCCEECT-TCSCSCTTCCEEEEECCTTCCEECT-TT-TTTCCCSEEEEESS-CCCSCCHH-HHTTCTTCCEEEC
T ss_pred eCCCC-cCcEeCh-hhcccCcccceeeCCCCccccccCc-cc-ccCccccEEECcCC-cccccCHH-HhcCccccCeeEC
Confidence 88773 3332211 2234577888888877644332111 11 11347888888775 34433322 2345778888888
Q ss_pred cccCCcCchHHHhhccCCCccEEeeeCccccChHHHHHHHhhCCCCCEEeccCcCCCCHHHHHHHhcCCCCCcEEeccCC
Q 013172 296 RFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSHC 375 (448)
Q Consensus 296 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c 375 (448)
+++ .+.......+...++|+.|+++++ .++..... .+..+++|+.|++++| .++..... .+..+++|++|+++++
T Consensus 256 s~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 256 SYN-PISTIEGSMLHELLRLQEIQLVGG-QLAVVEPY-AFRGLNYLRVLNVSGN-QLTTLEES-VFHSVGNLETLILDSN 330 (477)
T ss_dssp CSS-CCCEECTTSCTTCTTCCEEECCSS-CCSEECTT-TBTTCTTCCEEECCSS-CCSCCCGG-GBSCGGGCCEEECCSS
T ss_pred CCC-cCCccChhhccccccCCEEECCCC-ccceECHH-HhcCcccCCEEECCCC-cCceeCHh-HcCCCcccCEEEccCC
Confidence 774 355555555666667888888774 44432211 2235778888888877 44432211 2245678888888774
Q ss_pred C
Q 013172 376 R 376 (448)
Q Consensus 376 ~ 376 (448)
+
T Consensus 331 ~ 331 (477)
T 2id5_A 331 P 331 (477)
T ss_dssp C
T ss_pred C
Confidence 4
No 47
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.75 E-value=7.5e-19 Score=170.60 Aligned_cols=319 Identities=15% Similarity=0.080 Sum_probs=210.4
Q ss_pred cCCcceeeeccccccChhHHHHHHhhhCCCccEEEeccCCccChhhHHHHHhcCCCCceeeccccccchhhHHHHhhcCC
Q 013172 28 CNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCP 107 (448)
Q Consensus 28 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 107 (448)
+++++.|+++++ .+..... .++..+ ++|++|++++|. ++......+ ..+++|++|++++|.+....... +..++
T Consensus 50 l~~l~~l~l~~~-~l~~lp~-~~~~~l-~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~-~~~l~ 123 (597)
T 3oja_B 50 LNNQKIVTFKNS-TMRKLPA-ALLDSF-RQVELLNLNDLQ-IEEIDTYAF-AYAHTIQKLYMGFNAIRYLPPHV-FQNVP 123 (597)
T ss_dssp GCCCSEEEESSC-EESEECT-HHHHHC-CCCSEEECTTSC-CCEECTTTT-TTCTTCCEEECCSSCCCCCCTTT-TTTCT
T ss_pred CCCceEEEeeCC-CCCCcCH-HHHccC-CCCcEEECCCCC-CCCCChHHh-cCCCCCCEEECCCCcCCCCCHHH-HcCCC
Confidence 478899999887 3443322 223344 789999999975 554433333 56899999999999887644333 34689
Q ss_pred cccEEEeeccCCCcHHHHHHHhhccccccccccccccCChhHHHHHhhcCCCCCEEeecCCccCChhhHHHHHhcCCCCc
Q 013172 108 LLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELT 187 (448)
Q Consensus 108 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 187 (448)
+|++|++++|.+...... +...+++|++|+++++. +... .+..+..+++|+.|+++++. +.... ...+++|+
T Consensus 124 ~L~~L~L~~n~l~~l~~~-~~~~l~~L~~L~Ls~N~-l~~~-~~~~~~~l~~L~~L~L~~N~-l~~~~----~~~l~~L~ 195 (597)
T 3oja_B 124 LLTVLVLERNDLSSLPRG-IFHNTPKLTTLSMSNNN-LERI-EDDTFQATTSLQNLQLSSNR-LTHVD----LSLIPSLF 195 (597)
T ss_dssp TCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSC-CCBC-CTTTTTTCTTCCEEECTTSC-CSBCC----GGGCTTCS
T ss_pred CCCEEEeeCCCCCCCCHH-HhccCCCCCEEEeeCCc-CCCC-ChhhhhcCCcCcEEECcCCC-CCCcC----hhhhhhhh
Confidence 999999999888743332 22348999999998753 3221 12234467999999999986 44332 33578999
Q ss_pred EEEecCCCCCChhhHHHHhhcCCCcceEecccccccCchhHHHHhccCcCCceEeccCCcCcChHHHHHHHHhCCCCcEE
Q 013172 188 HLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKL 267 (448)
Q Consensus 188 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 267 (448)
.|++.++ .+... ...++|+.|+++++ .+..... ...++|+.|+++++. +.+. .....+++|+.|
T Consensus 196 ~L~l~~n-~l~~l------~~~~~L~~L~ls~n-~l~~~~~----~~~~~L~~L~L~~n~-l~~~---~~l~~l~~L~~L 259 (597)
T 3oja_B 196 HANVSYN-LLSTL------AIPIAVEELDASHN-SINVVRG----PVNVELTILKLQHNN-LTDT---AWLLNYPGLVEV 259 (597)
T ss_dssp EEECCSS-CCSEE------ECCTTCSEEECCSS-CCCEEEC----SCCSCCCEEECCSSC-CCCC---GGGGGCTTCSEE
T ss_pred hhhcccC-ccccc------cCCchhheeeccCC-ccccccc----ccCCCCCEEECCCCC-CCCC---hhhccCCCCCEE
Confidence 9999884 33332 12378999999884 3332221 124689999999864 4332 233558999999
Q ss_pred EccccccccCchHhHhhhcCCCCcEEeccccCCcCchHHHhhccCCCccEEeeeCccccChHHHHHHHhhCCCCCEEecc
Q 013172 268 HIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVS 347 (448)
Q Consensus 268 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 347 (448)
+++++. +...... ....+++|++|+++++. +... ......+++|+.|+++++ .++. +......+++|+.|+++
T Consensus 260 ~Ls~N~-l~~~~~~-~~~~l~~L~~L~Ls~N~-l~~l-~~~~~~l~~L~~L~Ls~N-~l~~--i~~~~~~l~~L~~L~L~ 332 (597)
T 3oja_B 260 DLSYNE-LEKIMYH-PFVKMQRLERLYISNNR-LVAL-NLYGQPIPTLKVLDLSHN-HLLH--VERNQPQFDRLENLYLD 332 (597)
T ss_dssp ECCSSC-CCEEESG-GGTTCSSCCEEECTTSC-CCEE-ECSSSCCTTCCEEECCSS-CCCC--CGGGHHHHTTCSEEECC
T ss_pred ECCCCc-cCCCCHH-HhcCccCCCEEECCCCC-CCCC-CcccccCCCCcEEECCCC-CCCc--cCcccccCCCCCEEECC
Confidence 999863 4433222 23468999999999853 5432 122344568999999986 4442 22223457999999999
Q ss_pred CcCCCCHHHHHHHhcCCCCCcEEeccCCCCCChHHHHHHHHc
Q 013172 348 VLQNLGDQAMVELGKGCPLLKDVVLSHCRQITDVGLSHLVKN 389 (448)
Q Consensus 348 ~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 389 (448)
+|. +.... ...+++|++|+++++ .+.......+...
T Consensus 333 ~N~-l~~~~----~~~~~~L~~L~l~~N-~~~~~~~~~~~~~ 368 (597)
T 3oja_B 333 HNS-IVTLK----LSTHHTLKNLTLSHN-DWDCNSLRALFRN 368 (597)
T ss_dssp SSC-CCCCC----CCTTCCCSEEECCSS-CEEHHHHHHHTTT
T ss_pred CCC-CCCcC----hhhcCCCCEEEeeCC-CCCChhHHHHHHH
Confidence 984 44332 346899999999995 4776666555543
No 48
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.72 E-value=4.4e-19 Score=174.47 Aligned_cols=133 Identities=20% Similarity=0.182 Sum_probs=92.6
Q ss_pred CCcceeeeccccccChhHHHHHHhhhCCCccEEEeccCCccChhhHHHHHhcCCCCceeeccccccchhhHHHHhhcCCc
Q 013172 29 NQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPL 108 (448)
Q Consensus 29 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 108 (448)
+.+++|+|+++ .++......+ ..+ ++|++|++++|. ++...... ...+++|++|+|++|.++...... +..+++
T Consensus 52 ~~~~~LdLs~N-~i~~l~~~~f-~~l-~~L~~L~Ls~N~-i~~i~~~~-f~~L~~L~~L~Ls~N~l~~l~~~~-f~~L~~ 125 (635)
T 4g8a_A 52 FSTKNLDLSFN-PLRHLGSYSF-FSF-PELQVLDLSRCE-IQTIEDGA-YQSLSHLSTLILTGNPIQSLALGA-FSGLSS 125 (635)
T ss_dssp TTCCEEECTTS-CCCEECTTTT-TTC-TTCCEEECTTCC-CCEECTTT-TTTCTTCCEEECTTCCCCEECGGG-GTTCTT
T ss_pred cCCCEEEeeCC-CCCCCCHHHH-hCC-CCCCEEECCCCc-CCCcChhH-hcCCCCCCEEEccCCcCCCCCHHH-hcCCCC
Confidence 47999999988 4554332222 233 789999999985 55433322 356899999999999886544333 456899
Q ss_pred ccEEEeeccCCCcHHHHHHHhhccccccccccccccCChhHHHHHhhcCCCCCEEeecCCc
Q 013172 109 LRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCY 169 (448)
Q Consensus 109 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 169 (448)
|++|+++.|.+.......+ ..+++|++|+++++. +.....+.....+++|++|+++++.
T Consensus 126 L~~L~Ls~N~l~~l~~~~~-~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 126 LQKLVAVETNLASLENFPI-GHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNK 184 (635)
T ss_dssp CCEEECTTSCCCCSTTCCC-TTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred CCEEECCCCcCCCCChhhh-hcCcccCeeccccCc-cccCCCchhhccchhhhhhcccCcc
Confidence 9999999888865433223 348999999998743 3332233445578999999999885
No 49
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.67 E-value=3.5e-15 Score=135.54 Aligned_cols=140 Identities=15% Similarity=0.162 Sum_probs=72.5
Q ss_pred cccCCcceeeeccccccChhHHHHHH---hhhCC-CccEEEeccCCccChhhHHHHHh---c-CCCCceeeccccccchh
Q 013172 26 KVCNQLEDLNLRFCEGLTDTGLVDLA---HGCGK-SLKSLGIAACVKITDVSLEAVGS---H-CKSLETLSLDSEFIHNK 97 (448)
Q Consensus 26 ~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~-~L~~L~l~~~~~~~~~~~~~~~~---~-~~~L~~L~l~~~~~~~~ 97 (448)
...++|++|+++++ .+.+.+...+. ... + +|++|++++|. +++.....+.. . +++|++|++++|.++..
T Consensus 19 ~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~-~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~ 95 (362)
T 3goz_A 19 SIPHGVTSLDLSLN-NLYSISTVELIQAFANT-PASVTSLNLSGNS-LGFKNSDELVQILAAIPANVTSLNLSGNFLSYK 95 (362)
T ss_dssp TSCTTCCEEECTTS-CGGGSCHHHHHHHHHTC-CTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS
T ss_pred hCCCCceEEEccCC-CCChHHHHHHHHHHHhC-CCceeEEECcCCC-CCHHHHHHHHHHHhccCCCccEEECcCCcCChH
Confidence 33355777777777 45554443322 222 3 67777777764 55444433332 2 27777777777776654
Q ss_pred hHHHH---hhcC-CcccEEEeeccCCCcHHHHHHHhh----ccccccccccccccCChhHHH---HHhhcCC-CCCEEee
Q 013172 98 GVHAV---AQGC-PLLRVLKLQCINVTDEALVAVGNQ----CLSLELLALYSFQQFTDKGLH---AVGKGCK-KLKNLTL 165 (448)
Q Consensus 98 ~~~~~---~~~~-~~L~~L~l~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~~~~~~---~~~~~~~-~L~~L~l 165 (448)
+...+ ...+ ++|++|++++|.+++.....+... .++|++|+++++ .+.+.+.. ......+ +|++|++
T Consensus 96 ~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~L 174 (362)
T 3goz_A 96 SSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKSSDELIQILAAIPANVNSLNL 174 (362)
T ss_dssp CHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEEC
T ss_pred HHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCC-cCCHHHHHHHHHHHhcCCccccEeee
Confidence 43332 2223 577777777776655444443322 235666666553 23322222 2222233 5555555
Q ss_pred cCCc
Q 013172 166 SDCY 169 (448)
Q Consensus 166 ~~~~ 169 (448)
++|.
T Consensus 175 s~n~ 178 (362)
T 3goz_A 175 RGNN 178 (362)
T ss_dssp TTSC
T ss_pred cCCC
Confidence 5553
No 50
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.67 E-value=6e-18 Score=151.98 Aligned_cols=148 Identities=18% Similarity=0.097 Sum_probs=79.3
Q ss_pred CcceeeeccccccChhHHHHHHhhhCCCccEEEeccCCccChhhHHHHHhcCCCCceeeccccccchhhHHHHhhcCCcc
Q 013172 30 QLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLL 109 (448)
Q Consensus 30 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 109 (448)
+++.++++++ .+.. +.....+.+++|+++++. ++...... ...+++|++|++++|.+.......+ ..+++|
T Consensus 32 ~l~~l~~~~~-~l~~-----lp~~~~~~l~~L~L~~n~-i~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L 102 (330)
T 1xku_A 32 HLRVVQCSDL-GLEK-----VPKDLPPDTALLDLQNNK-ITEIKDGD-FKNLKNLHTLILINNKISKISPGAF-APLVKL 102 (330)
T ss_dssp ETTEEECTTS-CCCS-----CCCSCCTTCCEEECCSSC-CCCBCTTT-TTTCTTCCEEECCSSCCCCBCTTTT-TTCTTC
T ss_pred CCeEEEecCC-Cccc-----cCccCCCCCeEEECCCCc-CCEeChhh-hccCCCCCEEECCCCcCCeeCHHHh-cCCCCC
Confidence 6777777765 2322 112223678888888874 44433222 2467888888888877765433333 357788
Q ss_pred cEEEeeccCCCcHHHHHHHhhccccccccccccccCChhHHHHHhhcCCCCCEEeecCCccCChh-hHHHHHhcCCCCcE
Q 013172 110 RVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDM-GLEAIATGCKELTH 188 (448)
Q Consensus 110 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~L~~ 188 (448)
++|+++++.+..... ...++|++|+++++. +... ....+..+++|+.|+++++. +... ........+++|+.
T Consensus 103 ~~L~Ls~n~l~~l~~----~~~~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~ 175 (330)
T 1xku_A 103 ERLYLSKNQLKELPE----KMPKTLQELRVHENE-ITKV-RKSVFNGLNQMIVVELGTNP-LKSSGIENGAFQGMKKLSY 175 (330)
T ss_dssp CEEECCSSCCSBCCS----SCCTTCCEEECCSSC-CCBB-CHHHHTTCTTCCEEECCSSC-CCGGGBCTTGGGGCTTCCE
T ss_pred CEEECCCCcCCccCh----hhcccccEEECCCCc-cccc-CHhHhcCCccccEEECCCCc-CCccCcChhhccCCCCcCE
Confidence 888887776653211 112566666666532 2221 12223345666666666654 2210 11112234566666
Q ss_pred EEecC
Q 013172 189 LEING 193 (448)
Q Consensus 189 L~l~~ 193 (448)
|++.+
T Consensus 176 L~l~~ 180 (330)
T 1xku_A 176 IRIAD 180 (330)
T ss_dssp EECCS
T ss_pred EECCC
Confidence 66655
No 51
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.64 E-value=1.1e-14 Score=132.23 Aligned_cols=260 Identities=14% Similarity=0.083 Sum_probs=127.2
Q ss_pred EEeeccCCCcHHHHHHHhhccccccccccccccCChhHH---HHHhhcCC-CCCEEeecCCccCChhhHHHHH---hcC-
Q 013172 112 LKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGL---HAVGKGCK-KLKNLTLSDCYFLSDMGLEAIA---TGC- 183 (448)
Q Consensus 112 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~---~~~- 183 (448)
++++.+.++.... .+....++|++|+++++. +.+... ...+..++ +|++|++++|. +.+.+...+. ...
T Consensus 3 ~~ls~n~~~~~~~-~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~ 79 (362)
T 3goz_A 3 YKLTLHPGSNPVE-EFTSIPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNS-LGFKNSDELVQILAAIP 79 (362)
T ss_dssp EECCCCTTCCHHH-HHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSSC-GGGSCHHHHHHHHHTSC
T ss_pred cccccccchHHHH-HHHhCCCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCCC-CCHHHHHHHHHHHhccC
Confidence 4556666664433 333434558888887643 433322 23344566 78888887775 4443333222 222
Q ss_pred CCCcEEEecCCCCCChhhHH---HHhhcC-CCcceEecccccccCchhHHH---Hhcc-CcCCceEeccCCcCcChHHHH
Q 013172 184 KELTHLEINGCHNIGTMGLE---SIGKFC-RNLTELALLYCQRIGNLALLE---VGRG-CKSLQALHLVDCSSIGDDAIC 255 (448)
Q Consensus 184 ~~L~~L~l~~~~~~~~~~~~---~l~~~~-~~L~~L~l~~~~~~~~~~~~~---~~~~-~~~L~~L~l~~~~~~~~~~~~ 255 (448)
++|++|+++++. +...... .....+ ++|++|+++++ .+.+..... .+.. .++|++|++++| .+++.+..
T Consensus 80 ~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~ 156 (362)
T 3goz_A 80 ANVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKSSD 156 (362)
T ss_dssp TTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGSCHH
T ss_pred CCccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEccCC-cCCHHHHH
Confidence 777777777743 3333222 222223 57777777764 344333222 2233 246777777764 33332222
Q ss_pred ---HHHHhCC-CCcEEEccccccccCchHhHh---hhcC-CCCcEEeccccCCcCchHHHh----hccC-CCccEEeeeC
Q 013172 256 ---SIAEGCQ-NLKKLHIRRCYKIGNNGIVAV---GEHC-NSLTELSLRFCDRVGDEALIS----IGQG-CSLQHLNVSG 322 (448)
Q Consensus 256 ---~~~~~~~-~L~~L~l~~~~~~~~~~~~~~---~~~~-~~L~~L~l~~~~~~~~~~~~~----l~~~-~~L~~L~l~~ 322 (448)
......+ +|++|+++++ .+++.+...+ ...+ ++|++|+++++. +++.+... +... ++|++|++++
T Consensus 157 ~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~ 234 (362)
T 3goz_A 157 ELIQILAAIPANVNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCL 234 (362)
T ss_dssp HHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCS
T ss_pred HHHHHHhcCCccccEeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcC
Confidence 2223343 6777777665 3443333222 2234 367777776643 44433222 2222 2566666665
Q ss_pred ccccChHHH---HHHHhhCCCCCEEeccCcC--CCCHHHHHHHhc---CCCCCcEEeccCCCCCChH
Q 013172 323 CHQIGDAGI---MAIAKGCPELNYLDVSVLQ--NLGDQAMVELGK---GCPLLKDVVLSHCRQITDV 381 (448)
Q Consensus 323 ~~~~~~~~~---~~~~~~~~~L~~L~l~~~~--~l~~~~~~~~~~---~~~~L~~L~l~~c~~l~~~ 381 (448)
+ .+++.+. ..+...+++|+.|++++|. .+++..+..+.. .+++|++|++++ +.+.+.
T Consensus 235 N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~-N~l~~~ 299 (362)
T 3goz_A 235 N-CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNG-KEIHPS 299 (362)
T ss_dssp S-CCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTS-CBCCGG
T ss_pred C-CCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCC-CcCCCc
Confidence 3 4444322 2223345566666666652 244444444432 334455555655 334443
No 52
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.64 E-value=2.2e-16 Score=147.42 Aligned_cols=36 Identities=14% Similarity=0.298 Sum_probs=16.8
Q ss_pred CCCceeeccccccchhhHHHHhhcCCcccEEEeeccCCC
Q 013172 82 KSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVT 120 (448)
Q Consensus 82 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 120 (448)
++|++|++++|.++. +.. +..+++|++|+++++.+.
T Consensus 131 ~~L~~L~L~~n~l~~--lp~-~~~l~~L~~L~l~~N~l~ 166 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK--LPE-LQNSSFLKIIDVDNNSLK 166 (454)
T ss_dssp TTCCEEECCSSCCSS--CCC-CTTCTTCCEEECCSSCCS
T ss_pred CCCCEEECcCCCCCC--Ccc-cCCCCCCCEEECCCCcCc
Confidence 355555555554443 112 233455555555555443
No 53
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.64 E-value=6e-17 Score=151.19 Aligned_cols=354 Identities=16% Similarity=0.106 Sum_probs=135.7
Q ss_pred eEEEeeeeccccccccccchhccccCCcceeeeccccc---cC-------hhHHHHHHhhhCCCccEEEeccCCccChhh
Q 013172 4 LVLNFGFCKGCYVGDQGLAAVGKVCNQLEDLNLRFCEG---LT-------DTGLVDLAHGCGKSLKSLGIAACVKITDVS 73 (448)
Q Consensus 4 ~~L~~s~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~---~~-------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 73 (448)
.+|+++.|.+..++++ + ..+++|++|+++++.. +. ......+......++++|++++|. ++...
T Consensus 14 ~~L~l~~n~l~~iP~~----i-~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~-l~~lp 87 (454)
T 1jl5_A 14 QEPLRHSSNLTEMPVE----A-ENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG-LSSLP 87 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC-CSCCC
T ss_pred hhhhcccCchhhCChh----H-hcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc-cccCC
Confidence 4677777766555432 2 3447888888876521 11 001111111111356677777664 33211
Q ss_pred HHHHHhcCCCCceeeccccccchhhHHHHhhcCCcccEEEeeccCCCcHHHHHHHhhccccccccccccccCChhHHHHH
Q 013172 74 LEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAV 153 (448)
Q Consensus 74 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 153 (448)
. ..++|++|++++|.++.. . ...++|++|+++++.+... ....++|++|+++++. +.. ++.
T Consensus 88 ~-----~~~~L~~L~l~~n~l~~l--p---~~~~~L~~L~l~~n~l~~l-----~~~~~~L~~L~L~~n~-l~~--lp~- 148 (454)
T 1jl5_A 88 E-----LPPHLESLVASCNSLTEL--P---ELPQSLKSLLVDNNNLKAL-----SDLPPLLEYLGVSNNQ-LEK--LPE- 148 (454)
T ss_dssp S-----CCTTCSEEECCSSCCSSC--C---CCCTTCCEEECCSSCCSCC-----CSCCTTCCEEECCSSC-CSS--CCC-
T ss_pred C-----CcCCCCEEEccCCcCCcc--c---cccCCCcEEECCCCccCcc-----cCCCCCCCEEECcCCC-CCC--Ccc-
Confidence 0 125566666666555431 1 1134555555555444321 0111345555554432 211 111
Q ss_pred hhcCCCCCEEeecCCcc-------------------CChhhHHHHHhcCCCCcEEEecCCCCCChhhHHHHhhcCCCcce
Q 013172 154 GKGCKKLKNLTLSDCYF-------------------LSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTE 214 (448)
Q Consensus 154 ~~~~~~L~~L~l~~~~~-------------------~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 214 (448)
+..+++|++|+++++.. +... .. ...+++|+.|++.++. +.. +....++|++
T Consensus 149 ~~~l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~~l--~~-~~~l~~L~~L~l~~N~-l~~-----l~~~~~~L~~ 219 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEEL--PE-LQNLPFLTAIYADNNS-LKK-----LPDLPLSLES 219 (454)
T ss_dssp CTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSC--CC-CTTCTTCCEEECCSSC-CSS-----CCCCCTTCCE
T ss_pred cCCCCCCCEEECCCCcCcccCCCcccccEEECcCCcCCcC--cc-ccCCCCCCEEECCCCc-CCc-----CCCCcCcccE
Confidence 23344555555554431 1111 01 1234445555544422 111 0111235555
Q ss_pred EecccccccCchhHHHHhccCcCCceEeccCCcCcChHHHHHHHHhCCCCcEEEccccccccCchHhHhhhcCCCCcEEe
Q 013172 215 LALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELS 294 (448)
Q Consensus 215 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 294 (448)
|+++++ .+...+ . ...+++|+.|+++++. +.. +...+++|+.|+++++. ++. + ...+++|++|+
T Consensus 220 L~l~~n-~l~~lp--~-~~~l~~L~~L~l~~N~-l~~-----l~~~~~~L~~L~l~~N~-l~~--l---~~~~~~L~~L~ 283 (454)
T 1jl5_A 220 IVAGNN-ILEELP--E-LQNLPFLTTIYADNNL-LKT-----LPDLPPSLEALNVRDNY-LTD--L---PELPQSLTFLD 283 (454)
T ss_dssp EECCSS-CCSSCC--C-CTTCTTCCEEECCSSC-CSS-----CCSCCTTCCEEECCSSC-CSC--C---CCCCTTCCEEE
T ss_pred EECcCC-cCCccc--c-cCCCCCCCEEECCCCc-CCc-----ccccccccCEEECCCCc-ccc--c---CcccCcCCEEE
Confidence 555543 222111 1 2345556666665532 221 00113456666665542 221 1 11235666666
Q ss_pred ccccCCcCchHHHhhccCCCccEEeeeCccccChHHHHHHHhhC-CCCCEEeccCcCCCCHHHHHHHhcCCCCCcEEecc
Q 013172 295 LRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGC-PELNYLDVSVLQNLGDQAMVELGKGCPLLKDVVLS 373 (448)
Q Consensus 295 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~ 373 (448)
++++. +... ..+ .++|+.|+++++ .++.. ..+ ++|+.|+++++ .++. +...+++|++|+++
T Consensus 284 ls~N~-l~~l--~~~--~~~L~~L~l~~N-~l~~i------~~~~~~L~~L~Ls~N-~l~~-----lp~~~~~L~~L~L~ 345 (454)
T 1jl5_A 284 VSENI-FSGL--SEL--PPNLYYLNASSN-EIRSL------CDLPPSLEELNVSNN-KLIE-----LPALPPRLERLIAS 345 (454)
T ss_dssp CCSSC-CSEE--SCC--CTTCCEEECCSS-CCSEE------CCCCTTCCEEECCSS-CCSC-----CCCCCTTCCEEECC
T ss_pred CcCCc-cCcc--cCc--CCcCCEEECcCC-cCCcc------cCCcCcCCEEECCCC-cccc-----ccccCCcCCEEECC
Confidence 66542 3221 000 135666666653 33321 112 46777777776 3432 22235778888887
Q ss_pred CCCCCChHHHHHHHHcCccCceEeccCCCCCCHHHHHHHHhc-------------CccceEEEEeeeeecc
Q 013172 374 HCRQITDVGLSHLVKNCRMLESCHMVYCPGITAAGVATVVSG-------------CANIKKVMVEKWKVSE 431 (448)
Q Consensus 374 ~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~-------------~~~L~~L~l~~~~~~~ 431 (448)
+| .++.... .+++|+.|++++|+......++.-+.. +++|+.|++++|++..
T Consensus 346 ~N-~l~~lp~-----~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 346 FN-HLAEVPE-----LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE 410 (454)
T ss_dssp SS-CCSCCCC-----CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC------------------------
T ss_pred CC-ccccccc-----hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCc
Confidence 74 4553221 357788888877653220001111112 2677888888877764
No 54
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.63 E-value=4.8e-17 Score=146.07 Aligned_cols=65 Identities=11% Similarity=0.061 Sum_probs=28.3
Q ss_pred CCCCCcEEeccCCCCCChHHHHHHHH-----cCccCceEeccCCCCCCHHHHHHHHhcCccceEEEEeeee
Q 013172 363 GCPLLKDVVLSHCRQITDVGLSHLVK-----NCRMLESCHMVYCPGITAAGVATVVSGCANIKKVMVEKWK 428 (448)
Q Consensus 363 ~~~~L~~L~l~~c~~l~~~~~~~~~~-----~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~L~l~~~~ 428 (448)
.+++|++|+++++ .++..+...+.. ..+.++.|++.+++.......+..+..+++++.+++++|+
T Consensus 261 ~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 261 DHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp TCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred cCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 3555555555553 344332221110 1355666666666532111111234456677777776653
No 55
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.59 E-value=1.7e-17 Score=149.09 Aligned_cols=38 Identities=18% Similarity=0.125 Sum_probs=19.0
Q ss_pred CCCceeeccccccchhhHHHHhhcCCcccEEEeeccCCC
Q 013172 82 KSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVT 120 (448)
Q Consensus 82 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 120 (448)
++|++|++++|.+....... +..+++|++|+++++.+.
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~-~~~l~~L~~L~L~~n~l~ 91 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDD-FKGLQHLYALVLVNNKIS 91 (332)
T ss_dssp TTCCEEECCSSCCCEECTTT-TTTCTTCCEEECCSSCCC
T ss_pred CCCeEEECCCCcCCccCHhH-hhCCCCCcEEECCCCccC
Confidence 45666666655554322222 233555666666555544
No 56
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.58 E-value=9.7e-17 Score=144.17 Aligned_cols=291 Identities=14% Similarity=0.050 Sum_probs=184.4
Q ss_pred CcceeeeccccccChhHHHHHHhhhCCCccEEEeccCCccChhhHHHHHhcCCCCceeeccccccchhhHHHHhhcCCcc
Q 013172 30 QLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLL 109 (448)
Q Consensus 30 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 109 (448)
+++.++++++ .+... .....+++++|+++++. ++...... ...+++|++|++++|.+.......+ ..+++|
T Consensus 34 ~l~~l~~~~~-~l~~i-----p~~~~~~l~~L~l~~n~-i~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L 104 (332)
T 2ft3_A 34 HLRVVQCSDL-GLKAV-----PKEISPDTTLLDLQNND-ISELRKDD-FKGLQHLYALVLVNNKISKIHEKAF-SPLRKL 104 (332)
T ss_dssp ETTEEECCSS-CCSSC-----CSCCCTTCCEEECCSSC-CCEECTTT-TTTCTTCCEEECCSSCCCEECGGGS-TTCTTC
T ss_pred cCCEEECCCC-Ccccc-----CCCCCCCCeEEECCCCc-CCccCHhH-hhCCCCCcEEECCCCccCccCHhHh-hCcCCC
Confidence 6899999877 33321 12223789999999985 55433323 3568999999999998876544444 468999
Q ss_pred cEEEeeccCCCcHHHHHHHhhccccccccccccccCChhHHHHHhhcCCCCCEEeecCCccCChhhH-HHHHhcCCCCcE
Q 013172 110 RVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGL-EAIATGCKELTH 188 (448)
Q Consensus 110 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~L~~ 188 (448)
++|+++++.+..... ...++|++|+++++. +... ....+..+++|+.|+++++. +...+. ......+ +|+.
T Consensus 105 ~~L~L~~n~l~~l~~----~~~~~L~~L~l~~n~-i~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l-~L~~ 176 (332)
T 2ft3_A 105 QKLYISKNHLVEIPP----NLPSSLVELRIHDNR-IRKV-PKGVFSGLRNMNCIEMGGNP-LENSGFEPGAFDGL-KLNY 176 (332)
T ss_dssp CEEECCSSCCCSCCS----SCCTTCCEEECCSSC-CCCC-CSGGGSSCSSCCEEECCSCC-CBGGGSCTTSSCSC-CCSC
T ss_pred CEEECCCCcCCccCc----cccccCCEEECCCCc-cCcc-CHhHhCCCccCCEEECCCCc-cccCCCCcccccCC-ccCE
Confidence 999999888763221 123789999998743 3221 12234568999999999986 322111 1112223 8999
Q ss_pred EEecCCCCCChhhHHHHhhcCCCcceEecccccccCchhHHHHhccCcCCceEeccCCcCcChHHHHHHHHhCCCCcEEE
Q 013172 189 LEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLH 268 (448)
Q Consensus 189 L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 268 (448)
|+++++. +..... ...++|++|+++++ .+..... ..+..+++|+.|+++++. +...... ....+++|+.|+
T Consensus 177 L~l~~n~-l~~l~~----~~~~~L~~L~l~~n-~i~~~~~-~~l~~l~~L~~L~L~~N~-l~~~~~~-~~~~l~~L~~L~ 247 (332)
T 2ft3_A 177 LRISEAK-LTGIPK----DLPETLNELHLDHN-KIQAIEL-EDLLRYSKLYRLGLGHNQ-IRMIENG-SLSFLPTLRELH 247 (332)
T ss_dssp CBCCSSB-CSSCCS----SSCSSCSCCBCCSS-CCCCCCT-TSSTTCTTCSCCBCCSSC-CCCCCTT-GGGGCTTCCEEE
T ss_pred EECcCCC-CCccCc----cccCCCCEEECCCC-cCCccCH-HHhcCCCCCCEEECCCCc-CCcCChh-HhhCCCCCCEEE
Confidence 9998853 332111 11279999999884 4443322 223568999999999853 3332211 234589999999
Q ss_pred ccccccccCchHhHhhhcCCCCcEEeccccCCcCchHHHhhcc------CCCccEEeeeCccccChHHHHHHHhhCCCCC
Q 013172 269 IRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQ------GCSLQHLNVSGCHQIGDAGIMAIAKGCPELN 342 (448)
Q Consensus 269 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~------~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 342 (448)
++++. ++. ++.....+++|++|+++++ .++......+.. ..+|+.|++.+++..........+..+++|+
T Consensus 248 L~~N~-l~~--lp~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~ 323 (332)
T 2ft3_A 248 LDNNK-LSR--VPAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRL 323 (332)
T ss_dssp CCSSC-CCB--CCTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCST
T ss_pred CCCCc-Cee--cChhhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCcccccccCcccccccchhh
Confidence 99863 442 2233457899999999985 466555554443 2459999999864321111223345689999
Q ss_pred EEeccCcC
Q 013172 343 YLDVSVLQ 350 (448)
Q Consensus 343 ~L~l~~~~ 350 (448)
.++++++.
T Consensus 324 ~l~l~~n~ 331 (332)
T 2ft3_A 324 AIQFGNYK 331 (332)
T ss_dssp TEEC----
T ss_pred hhhccccc
Confidence 99998873
No 57
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.57 E-value=1.6e-15 Score=137.49 Aligned_cols=256 Identities=14% Similarity=0.084 Sum_probs=104.4
Q ss_pred cccccccccccccCChhHHHHHhhcCCCCCEEeecCCccCChhhHHHHHhcCCCCcEEEecCCCCCChhhHHHHhhcCCC
Q 013172 132 LSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRN 211 (448)
Q Consensus 132 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 211 (448)
++|++|+++++. +... ....+..+++|++|+++++. +..... .....+++|++|+++++ .+.......+ ..+++
T Consensus 52 ~~L~~L~l~~n~-i~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~ 125 (353)
T 2z80_A 52 EAVKSLDLSNNR-ITYI-SNSDLQRCVNLQALVLTSNG-INTIEE-DSFSSLGSLEHLDLSYN-YLSNLSSSWF-KPLSS 125 (353)
T ss_dssp TTCCEEECTTSC-CCEE-CTTTTTTCTTCCEEECTTSC-CCEECT-TTTTTCTTCCEEECCSS-CCSSCCHHHH-TTCTT
T ss_pred ccCcEEECCCCc-Cccc-CHHHhccCCCCCEEECCCCc-cCccCH-hhcCCCCCCCEEECCCC-cCCcCCHhHh-CCCcc
Confidence 467777776532 2221 11122345666777666664 322111 11224566666666653 2333222222 22466
Q ss_pred cceEecccccccCchhHHHHhccCcCCceEeccCCcCcChHHHHHHHHhCCCCcEEEccccccccCchHhHhhhcCCCCc
Q 013172 212 LTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLT 291 (448)
Q Consensus 212 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 291 (448)
|++|+++++ .+...........+++|+.|+++++..+...... .+..+++|++|+++++. ++.... .....+++|+
T Consensus 126 L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~l~~L~~L~l~~n~-l~~~~~-~~l~~l~~L~ 201 (353)
T 2z80_A 126 LTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK-DFAGLTFLEELEIDASD-LQSYEP-KSLKSIQNVS 201 (353)
T ss_dssp CSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT-TTTTCCEEEEEEEEETT-CCEECT-TTTTTCSEEE
T ss_pred CCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHH-HccCCCCCCEEECCCCC-cCccCH-HHHhccccCC
Confidence 666666653 2222111012234555666665554222211111 11234555555555432 222111 1122345555
Q ss_pred EEeccccCCcCchHHHhhccCCCccEEeeeCccccChHHHHH--HHhhCCCCCEEeccCcCCCCHHHHHHH---hcCCCC
Q 013172 292 ELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMA--IAKGCPELNYLDVSVLQNLGDQAMVEL---GKGCPL 366 (448)
Q Consensus 292 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~l~~~~~~~~---~~~~~~ 366 (448)
+|+++++. +.......+...++|+.|+++++ .++...... .....+.++.+++.++ .+++..+..+ ...+++
T Consensus 202 ~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~~~~~~l~~l~L~~~-~l~~~~l~~l~~~l~~l~~ 278 (353)
T 2z80_A 202 HLILHMKQ-HILLLEIFVDVTSSVECLELRDT-DLDTFHFSELSTGETNSLIKKFTFRNV-KITDESLFQVMKLLNQISG 278 (353)
T ss_dssp EEEEECSC-STTHHHHHHHHTTTEEEEEEESC-BCTTCCCC------CCCCCCEEEEESC-BCCHHHHHHHHHHHHTCTT
T ss_pred eecCCCCc-cccchhhhhhhcccccEEECCCC-ccccccccccccccccchhhccccccc-cccCcchhhhHHHHhcccC
Confidence 55555532 33222222223344555555543 222211000 1112344555555554 3444333222 234555
Q ss_pred CcEEeccCCCCCChHHHHHHHHcCccCceEeccCCC
Q 013172 367 LKDVVLSHCRQITDVGLSHLVKNCRMLESCHMVYCP 402 (448)
Q Consensus 367 L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~ 402 (448)
|++|+++++ .++.... .++..+++|+.|++++|+
T Consensus 279 L~~L~Ls~N-~l~~i~~-~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 279 LLELEFSRN-QLKSVPD-GIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp CCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC
T ss_pred CCEEECCCC-CCCccCH-HHHhcCCCCCEEEeeCCC
Confidence 555555552 3442211 111234555555555554
No 58
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.56 E-value=8.6e-16 Score=139.25 Aligned_cols=258 Identities=16% Similarity=0.119 Sum_probs=124.4
Q ss_pred CCccEEEeccCCccChhhHHHHHhcCCCCceeeccccccchhhHHHHhhcCCcccEEEeeccCCCcHHHHHHHhhccccc
Q 013172 56 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLE 135 (448)
Q Consensus 56 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 135 (448)
++|++|+++++. ++...... ...+++|++|++++|.++......+ ..+++|++|++++|.+.......+ ..+++|+
T Consensus 52 ~~L~~L~l~~n~-i~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~ 127 (353)
T 2z80_A 52 EAVKSLDLSNNR-ITYISNSD-LQRCVNLQALVLTSNGINTIEEDSF-SSLGSLEHLDLSYNYLSNLSSSWF-KPLSSLT 127 (353)
T ss_dssp TTCCEEECTTSC-CCEECTTT-TTTCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEECCSSCCSSCCHHHH-TTCTTCS
T ss_pred ccCcEEECCCCc-CcccCHHH-hccCCCCCEEECCCCccCccCHhhc-CCCCCCCEEECCCCcCCcCCHhHh-CCCccCC
Confidence 577788887764 44332222 2456777777777777654332222 346777777777766654332222 2255555
Q ss_pred cccccccccCChhHHHHHhhcCCCCCEEeecCCccCChhhHHHHHhcCCCCcEEEecCCCCCChhhHHHHhhcCCCcceE
Q 013172 136 LLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTEL 215 (448)
Q Consensus 136 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L 215 (448)
+|+++++. +.. ++. ......+++|+.|++.++..+.......+. .+++|++|
T Consensus 128 ~L~L~~n~-l~~--l~~------------------------~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-~l~~L~~L 179 (353)
T 2z80_A 128 FLNLLGNP-YKT--LGE------------------------TSLFSHLTKLQILRVGNMDTFTKIQRKDFA-GLTFLEEL 179 (353)
T ss_dssp EEECTTCC-CSS--SCS------------------------SCSCTTCTTCCEEEEEESSSCCEECTTTTT-TCCEEEEE
T ss_pred EEECCCCC-Ccc--cCc------------------------hhhhccCCCCcEEECCCCccccccCHHHcc-CCCCCCEE
Confidence 55555421 111 000 001123445555555443222221111111 23555555
Q ss_pred ecccccccCchhHHHHhccCcCCceEeccCCcCcChHHHHHHHHhCCCCcEEEccccccccCchHhH--hhhcCCCCcEE
Q 013172 216 ALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVA--VGEHCNSLTEL 293 (448)
Q Consensus 216 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~~~L~~L 293 (448)
+++++ .+.... ...+..+++|++|+++++. +.... ..+...+++|+.|+++++. ++...+.. .....+.++.+
T Consensus 180 ~l~~n-~l~~~~-~~~l~~l~~L~~L~l~~n~-l~~~~-~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~~~~~~l~~l 254 (353)
T 2z80_A 180 EIDAS-DLQSYE-PKSLKSIQNVSHLILHMKQ-HILLL-EIFVDVTSSVECLELRDTD-LDTFHFSELSTGETNSLIKKF 254 (353)
T ss_dssp EEEET-TCCEEC-TTTTTTCSEEEEEEEECSC-STTHH-HHHHHHTTTEEEEEEESCB-CTTCCCC------CCCCCCEE
T ss_pred ECCCC-CcCccC-HHHHhccccCCeecCCCCc-cccch-hhhhhhcccccEEECCCCc-cccccccccccccccchhhcc
Confidence 55552 222211 1122345666666666643 32222 2233346677777776642 33222111 11234566777
Q ss_pred eccccCCcCchHHH----hhccCCCccEEeeeCccccChHHHHHHHhhCCCCCEEeccCcCCCC
Q 013172 294 SLRFCDRVGDEALI----SIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLG 353 (448)
Q Consensus 294 ~l~~~~~~~~~~~~----~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 353 (448)
+++++ .+.+..+. .+...++|+.|+++++ .++... ..+...+++|++|++++|+...
T Consensus 255 ~L~~~-~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~-~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 255 TFRNV-KITDESLFQVMKLLNQISGLLELEFSRN-QLKSVP-DGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp EEESC-BCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSCBCC
T ss_pred ccccc-cccCcchhhhHHHHhcccCCCEEECCCC-CCCccC-HHHHhcCCCCCEEEeeCCCccC
Confidence 77664 34443332 3445566777777774 444211 1223457788888888875433
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.55 E-value=2.3e-15 Score=134.04 Aligned_cols=130 Identities=11% Similarity=0.062 Sum_probs=60.4
Q ss_pred CCCCcEEEccccccccCchHhHhhhcCCCCcEEeccccCCcCchHHHhhccCCCccEEeeeCccccChHHHHHHHhhCCC
Q 013172 261 CQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPE 340 (448)
Q Consensus 261 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 340 (448)
+++|+.|+++++ .++......+...+++|++|+++++. +... ......++|+.|+++++ .++.... ....+++
T Consensus 143 l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~--~~~~~l~~L~~L~Ls~N-~l~~l~~--~~~~l~~ 215 (317)
T 3o53_A 143 RSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNF-IYDV--KGQVVFAKLKTLDLSSN-KLAFMGP--EFQSAAG 215 (317)
T ss_dssp GSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSC-CCEE--ECCCCCTTCCEEECCSS-CCCEECG--GGGGGTT
T ss_pred cCCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCCCc-Cccc--ccccccccCCEEECCCC-cCCcchh--hhcccCc
Confidence 445555555543 23332333333345556666665532 3221 11222345666666553 3332111 1234566
Q ss_pred CCEEeccCcCCCCHHHHHHHhcCCCCCcEEeccCCCCCChHHHHHHHHcCccCceEeccCC
Q 013172 341 LNYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSHCRQITDVGLSHLVKNCRMLESCHMVYC 401 (448)
Q Consensus 341 L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c 401 (448)
|+.|++++| .++.. ......+++|++|+++++ .++...+..+...+++|+.+++.++
T Consensus 216 L~~L~L~~N-~l~~l--~~~~~~l~~L~~L~l~~N-~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 216 VTWISLRNN-KLVLI--EKALRFSQNLEHFDLRGN-GFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp CSEEECTTS-CCCEE--CTTCCCCTTCCEEECTTC-CCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred ccEEECcCC-cccch--hhHhhcCCCCCEEEccCC-CccCcCHHHHHhccccceEEECCCc
Confidence 666666666 33321 111234566777777663 3553344444455666666665533
No 60
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.54 E-value=9e-16 Score=136.73 Aligned_cols=60 Identities=22% Similarity=0.250 Sum_probs=37.0
Q ss_pred CCccEEEeccCCccChhhHHHHHhcCCCCceeeccccccchhhHHHHhhcCCcccEEEeeccCCC
Q 013172 56 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVT 120 (448)
Q Consensus 56 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 120 (448)
++|++|++++|. ++......+ ..+++|++|++++|.+..... +..+++|++|++++|.+.
T Consensus 34 ~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~Ls~n~l~ 93 (317)
T 3o53_A 34 WNVKELDLSGNP-LSQISAADL-APFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQ 93 (317)
T ss_dssp GGCSEEECTTSC-CCCCCHHHH-TTCTTCCEEECTTSCCEEEEE---ETTCTTCCEEECCSSEEE
T ss_pred CCCCEEECcCCc-cCcCCHHHh-hCCCcCCEEECCCCcCCcchh---hhhcCCCCEEECcCCccc
Confidence 567777777764 554443333 457777777777776653221 344667777777666554
No 61
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.52 E-value=1.8e-16 Score=140.75 Aligned_cols=233 Identities=16% Similarity=0.096 Sum_probs=146.3
Q ss_pred CCcceeeeccccccChhHHHHHHhhhCCCccEEEeccCCccChhh--HHHHHhcCCCCceeeccccccchhhHHHHhhcC
Q 013172 29 NQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVS--LEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGC 106 (448)
Q Consensus 29 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 106 (448)
+++++|+++++ .+..... ..+..+ ++|++|+++++. ++..+ ...+ ..+++|++|++++|.+... ...+..+
T Consensus 28 ~~l~~L~L~~n-~l~~i~~-~~~~~l-~~L~~L~L~~n~-l~~~~~~~~~~-~~~~~L~~L~Ls~n~i~~l--~~~~~~l 100 (306)
T 2z66_A 28 SSATRLELESN-KLQSLPH-GVFDKL-TQLTKLSLSSNG-LSFKGCCSQSD-FGTTSLKYLDLSFNGVITM--SSNFLGL 100 (306)
T ss_dssp TTCCEEECCSS-CCCCCCT-TTTTTC-TTCSEEECCSSC-CCEEEEEEHHH-HSCSCCCEEECCSCSEEEE--EEEEETC
T ss_pred CCCCEEECCCC-ccCccCH-hHhhcc-ccCCEEECCCCc-cCcccCccccc-ccccccCEEECCCCccccC--hhhcCCC
Confidence 68999999988 4443221 112333 789999999875 44321 1222 3579999999999887642 2224458
Q ss_pred CcccEEEeeccCCCcHHHHHHHhhccccccccccccccCChhHHHHHhhcCCCCCEEeecCCccCChhhHHHHHhcCCCC
Q 013172 107 PLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKEL 186 (448)
Q Consensus 107 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 186 (448)
++|++|+++++.+...........+++|++|+++++. +.. ..+..+..+++|++|+++++. +.+.........+++|
T Consensus 101 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~-~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L 177 (306)
T 2z66_A 101 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRV-AFNGIFNGLSSLEVLKMAGNS-FQENFLPDIFTELRNL 177 (306)
T ss_dssp TTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC-CEE-CSTTTTTTCTTCCEEECTTCE-EGGGEECSCCTTCTTC
T ss_pred CCCCEEECCCCcccccccchhhhhccCCCEEECCCCc-CCc-cchhhcccCcCCCEEECCCCc-cccccchhHHhhCcCC
Confidence 8999999988877654332223447899999998753 221 122234467899999999886 3321122234467899
Q ss_pred cEEEecCCCCCChhhHHHHhhcCCCcceEecccccccCchhHHHHhccCcCCceEeccCCcCcChHHHHHHHHhC-CCCc
Q 013172 187 THLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGC-QNLK 265 (448)
Q Consensus 187 ~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~L~ 265 (448)
+.|+++++ .+.......+. .+++|++|+++++ .+...... ....+++|+.|+++++. +.......+ ..+ ++|+
T Consensus 178 ~~L~Ls~n-~l~~~~~~~~~-~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~N~-l~~~~~~~~-~~~~~~L~ 251 (306)
T 2z66_A 178 TFLDLSQC-QLEQLSPTAFN-SLSSLQVLNMSHN-NFFSLDTF-PYKCLNSLQVLDYSLNH-IMTSKKQEL-QHFPSSLA 251 (306)
T ss_dssp CEEECTTS-CCCEECTTTTT-TCTTCCEEECTTS-CCSBCCSG-GGTTCTTCCEEECTTSC-CCBCSSSSC-CCCCTTCC
T ss_pred CEEECCCC-CcCCcCHHHhc-CCCCCCEEECCCC-ccCccChh-hccCcccCCEeECCCCC-CcccCHHHH-HhhhccCC
Confidence 99999985 34443222333 3589999999984 34332221 23568999999999863 433222222 235 4899
Q ss_pred EEEccccccccC
Q 013172 266 KLHIRRCYKIGN 277 (448)
Q Consensus 266 ~L~l~~~~~~~~ 277 (448)
.|++++++-..+
T Consensus 252 ~L~L~~N~~~~~ 263 (306)
T 2z66_A 252 FLNLTQNDFACT 263 (306)
T ss_dssp EEECTTCCEECS
T ss_pred EEEccCCCeecc
Confidence 999998754333
No 62
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.52 E-value=6.5e-14 Score=134.85 Aligned_cols=240 Identities=17% Similarity=0.089 Sum_probs=107.9
Q ss_pred CCccEEEeccCCccChhhHHHHHhcCCCCceeeccccccchhhHHHHhhcCCcccEEEeeccCCCcHHHHHHHhhccccc
Q 013172 56 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLE 135 (448)
Q Consensus 56 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 135 (448)
++|++|++++|. ++.... .+++|++|++++|.++... ..+++|++|++++|.+..... .+++|+
T Consensus 61 ~~L~~L~L~~N~-l~~lp~-----~l~~L~~L~Ls~N~l~~lp-----~~l~~L~~L~Ls~N~l~~l~~-----~l~~L~ 124 (622)
T 3g06_A 61 AHITTLVIPDNN-LTSLPA-----LPPELRTLEVSGNQLTSLP-----VLPPGLLELSIFSNPLTHLPA-----LPSGLC 124 (622)
T ss_dssp TTCSEEEECSCC-CSCCCC-----CCTTCCEEEECSCCCSCCC-----CCCTTCCEEEECSCCCCCCCC-----CCTTCC
T ss_pred CCCcEEEecCCC-CCCCCC-----cCCCCCEEEcCCCcCCcCC-----CCCCCCCEEECcCCcCCCCCC-----CCCCcC
Confidence 455555555553 322111 2455555555555543211 134555555555555443111 245555
Q ss_pred cccccccccCChhHHHHHhhcCCCCCEEeecCCccCChhhHHHHHhcCCCCcEEEecCCCCCChhhHHHHhhcCCCcceE
Q 013172 136 LLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTEL 215 (448)
Q Consensus 136 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L 215 (448)
.|+++++. +.. +...+++|++|++++|. +... ....++|+.|++.++. +.... ..+++|+.|
T Consensus 125 ~L~L~~N~-l~~-----lp~~l~~L~~L~Ls~N~-l~~l-----~~~~~~L~~L~L~~N~-l~~l~-----~~~~~L~~L 186 (622)
T 3g06_A 125 KLWIFGNQ-LTS-----LPVLPPGLQELSVSDNQ-LASL-----PALPSELCKLWAYNNQ-LTSLP-----MLPSGLQEL 186 (622)
T ss_dssp EEECCSSC-CSC-----CCCCCTTCCEEECCSSC-CSCC-----CCCCTTCCEEECCSSC-CSCCC-----CCCTTCCEE
T ss_pred EEECCCCC-CCc-----CCCCCCCCCEEECcCCc-CCCc-----CCccCCCCEEECCCCC-CCCCc-----ccCCCCcEE
Confidence 55555432 211 01123566666666554 2211 0123456666665532 22211 223566666
Q ss_pred ecccccccCchhHHHHhccCcCCceEeccCCcCcChHHHHHHHHhCCCCcEEEccccccccCchHhHhhhcCCCCcEEec
Q 013172 216 ALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSL 295 (448)
Q Consensus 216 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 295 (448)
+++++ .+...+ ...++|+.|+++++. +.. +...+++|+.|+++++ .++... ..+++|++|++
T Consensus 187 ~Ls~N-~l~~l~-----~~~~~L~~L~L~~N~-l~~-----l~~~~~~L~~L~Ls~N-~L~~lp-----~~l~~L~~L~L 248 (622)
T 3g06_A 187 SVSDN-QLASLP-----TLPSELYKLWAYNNR-LTS-----LPALPSGLKELIVSGN-RLTSLP-----VLPSELKELMV 248 (622)
T ss_dssp ECCSS-CCSCCC-----CCCTTCCEEECCSSC-CSS-----CCCCCTTCCEEECCSS-CCSCCC-----CCCTTCCEEEC
T ss_pred ECCCC-CCCCCC-----CccchhhEEECcCCc-ccc-----cCCCCCCCCEEEccCC-ccCcCC-----CCCCcCcEEEC
Confidence 66553 222211 123566666666532 221 1112356666666654 233211 23456666666
Q ss_pred cccCCcCchHHHhhccCCCccEEeeeCccccChHHHHHHHhhCCCCCEEeccCcCCCCHHH
Q 013172 296 RFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQA 356 (448)
Q Consensus 296 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 356 (448)
+++ .++... . ..++|+.|+++++ .++. +...+..+++|+.|++++| .++...
T Consensus 249 s~N-~L~~lp--~--~~~~L~~L~Ls~N-~L~~--lp~~l~~l~~L~~L~L~~N-~l~~~~ 300 (622)
T 3g06_A 249 SGN-RLTSLP--M--LPSGLLSLSVYRN-QLTR--LPESLIHLSSETTVNLEGN-PLSERT 300 (622)
T ss_dssp CSS-CCSCCC--C--CCTTCCEEECCSS-CCCS--CCGGGGGSCTTCEEECCSC-CCCHHH
T ss_pred CCC-CCCcCC--c--ccccCcEEeCCCC-CCCc--CCHHHhhccccCEEEecCC-CCCCcC
Confidence 664 233211 1 2235666666663 3432 2222345666666666666 344433
No 63
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.50 E-value=2.4e-14 Score=137.79 Aligned_cols=265 Identities=18% Similarity=0.097 Sum_probs=168.6
Q ss_pred CCccEEEeccCCccChhhHHHHHhcCCCCceeeccccccchhhHHHHhhcCCcccEEEeeccCCCcHHHHHHHhhccccc
Q 013172 56 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLE 135 (448)
Q Consensus 56 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 135 (448)
.++++|+++++. ++... ..+ .++|++|++++|.++... ..+++|++|++++|.++... ..+++|+
T Consensus 40 ~~l~~L~ls~n~-L~~lp-~~l---~~~L~~L~L~~N~l~~lp-----~~l~~L~~L~Ls~N~l~~lp-----~~l~~L~ 104 (622)
T 3g06_A 40 NGNAVLNVGESG-LTTLP-DCL---PAHITTLVIPDNNLTSLP-----ALPPELRTLEVSGNQLTSLP-----VLPPGLL 104 (622)
T ss_dssp HCCCEEECCSSC-CSCCC-SCC---CTTCSEEEECSCCCSCCC-----CCCTTCCEEEECSCCCSCCC-----CCCTTCC
T ss_pred CCCcEEEecCCC-cCccC-hhh---CCCCcEEEecCCCCCCCC-----CcCCCCCEEEcCCCcCCcCC-----CCCCCCC
Confidence 469999999875 44222 111 278999999999876422 24789999999988876422 2478999
Q ss_pred cccccccccCChhHHHHHhhcCCCCCEEeecCCccCChhhHHHHHhcCCCCcEEEecCCCCCChhhHHHHhhcCCCcceE
Q 013172 136 LLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTEL 215 (448)
Q Consensus 136 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L 215 (448)
+|+++++. +.. ++ ..+++|+.|+++++. ++.. ...+++|++|+++++. +... ....++|+.|
T Consensus 105 ~L~Ls~N~-l~~--l~---~~l~~L~~L~L~~N~-l~~l-----p~~l~~L~~L~Ls~N~-l~~l-----~~~~~~L~~L 166 (622)
T 3g06_A 105 ELSIFSNP-LTH--LP---ALPSGLCKLWIFGNQ-LTSL-----PVLPPGLQELSVSDNQ-LASL-----PALPSELCKL 166 (622)
T ss_dssp EEEECSCC-CCC--CC---CCCTTCCEEECCSSC-CSCC-----CCCCTTCCEEECCSSC-CSCC-----CCCCTTCCEE
T ss_pred EEECcCCc-CCC--CC---CCCCCcCEEECCCCC-CCcC-----CCCCCCCCEEECcCCc-CCCc-----CCccCCCCEE
Confidence 99998753 322 11 145789999998886 3321 1235889999998853 3321 1234788899
Q ss_pred ecccccccCchhHHHHhccCcCCceEeccCCcCcChHHHHHHHHhCCCCcEEEccccccccCchHhHhhhcCCCCcEEec
Q 013172 216 ALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSL 295 (448)
Q Consensus 216 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 295 (448)
++.++ .+...+ ..+++|+.|+++++. +.. +....++|+.|++.++. ++.. ...+++|++|++
T Consensus 167 ~L~~N-~l~~l~-----~~~~~L~~L~Ls~N~-l~~-----l~~~~~~L~~L~L~~N~-l~~l-----~~~~~~L~~L~L 228 (622)
T 3g06_A 167 WAYNN-QLTSLP-----MLPSGLQELSVSDNQ-LAS-----LPTLPSELYKLWAYNNR-LTSL-----PALPSGLKELIV 228 (622)
T ss_dssp ECCSS-CCSCCC-----CCCTTCCEEECCSSC-CSC-----CCCCCTTCCEEECCSSC-CSSC-----CCCCTTCCEEEC
T ss_pred ECCCC-CCCCCc-----ccCCCCcEEECCCCC-CCC-----CCCccchhhEEECcCCc-cccc-----CCCCCCCCEEEc
Confidence 88873 444322 456888999988853 332 11235788888888753 3321 123578888888
Q ss_pred cccCCcCchHHHhhccCCCccEEeeeCccccChHHHHHHHhhCCCCCEEeccCcCCCCHHHHHHHhcCCCCCcEEeccCC
Q 013172 296 RFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSHC 375 (448)
Q Consensus 296 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c 375 (448)
+++ .++... ...++|+.|+++++ .++. +.. .+++|+.|++++| .++.. ......+++|+.|+++++
T Consensus 229 s~N-~L~~lp----~~l~~L~~L~Ls~N-~L~~--lp~---~~~~L~~L~Ls~N-~L~~l--p~~l~~l~~L~~L~L~~N 294 (622)
T 3g06_A 229 SGN-RLTSLP----VLPSELKELMVSGN-RLTS--LPM---LPSGLLSLSVYRN-QLTRL--PESLIHLSSETTVNLEGN 294 (622)
T ss_dssp CSS-CCSCCC----CCCTTCCEEECCSS-CCSC--CCC---CCTTCCEEECCSS-CCCSC--CGGGGGSCTTCEEECCSC
T ss_pred cCC-ccCcCC----CCCCcCcEEECCCC-CCCc--CCc---ccccCcEEeCCCC-CCCcC--CHHHhhccccCEEEecCC
Confidence 875 344321 23356888888874 4543 111 4678888888887 45422 122345788888888884
Q ss_pred CCCChHHHHHH
Q 013172 376 RQITDVGLSHL 386 (448)
Q Consensus 376 ~~l~~~~~~~~ 386 (448)
.++......+
T Consensus 295 -~l~~~~~~~l 304 (622)
T 3g06_A 295 -PLSERTLQAL 304 (622)
T ss_dssp -CCCHHHHHHH
T ss_pred -CCCCcCHHHH
Confidence 4776555444
No 64
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.49 E-value=4.2e-14 Score=111.03 Aligned_cols=104 Identities=14% Similarity=0.255 Sum_probs=62.0
Q ss_pred CccEEeeeCccccChHHHHHHHhhCCCCCEEeccCcCCCCHHHHHHHhcC---CCCCcEEeccCCCCCChHHHHHHHHcC
Q 013172 314 SLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKG---CPLLKDVVLSHCRQITDVGLSHLVKNC 390 (448)
Q Consensus 314 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~---~~~L~~L~l~~c~~l~~~~~~~~~~~~ 390 (448)
.|++|++++|. +++.++..+ ..|++|++|++++|..++|.++..+... +++|++|++++|++||+.++..+. .+
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~-~~ 138 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH-HF 138 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG-GC
T ss_pred eEeEEeCcCCC-ccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh-cC
Confidence 36666666654 666555554 3566666666666666666666666542 346666666666666666666664 46
Q ss_pred ccCceEeccCCCCCCHHHH--HHHHhcCccce
Q 013172 391 RMLESCHMVYCPGITAAGV--ATVVSGCANIK 420 (448)
Q Consensus 391 ~~L~~L~l~~c~~~~~~~~--~~~~~~~~~L~ 420 (448)
++|++|++++|+.+++.++ ..+...+|+++
T Consensus 139 ~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~ 170 (176)
T 3e4g_A 139 RNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE 170 (176)
T ss_dssp TTCCEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred CCCCEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence 6666666666666665442 23344556554
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.48 E-value=1.4e-15 Score=135.25 Aligned_cols=111 Identities=19% Similarity=0.220 Sum_probs=53.2
Q ss_pred CCCcEEEecCCCCCChhhHHHHhhcCCCcceEecccccccCchhHHHHh--ccCcCCceEeccCCcCcCh--HHHHHHHH
Q 013172 184 KELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVG--RGCKSLQALHLVDCSSIGD--DAICSIAE 259 (448)
Q Consensus 184 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~--~~~~~~~~ 259 (448)
++|++|+++++. +.......+. .+++|++|+++++............ ..+++|++|+++++. +.. .....+..
T Consensus 149 ~~L~~L~L~~N~-l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~ 225 (312)
T 1wwl_A 149 PGLKVLSIAQAH-SLNFSCEQVR-VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAA 225 (312)
T ss_dssp TTCCEEEEESCS-CCCCCTTTCC-CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHH
T ss_pred CCCcEEEeeCCC-CccchHHHhc-cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHh
Confidence 566666666532 3222212222 2366666666663322212222222 456677777777643 332 12223444
Q ss_pred hCCCCcEEEccccccccCchHhHhhhcCCCCcEEecccc
Q 013172 260 GCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFC 298 (448)
Q Consensus 260 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 298 (448)
.+++|+.|+++++. ++..........+++|++|+++++
T Consensus 226 ~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~Ls~N 263 (312)
T 1wwl_A 226 ARVQLQGLDLSHNS-LRDAAGAPSCDWPSQLNSLNLSFT 263 (312)
T ss_dssp TTCCCSEEECTTSC-CCSSCCCSCCCCCTTCCEEECTTS
T ss_pred cCCCCCEEECCCCc-CCcccchhhhhhcCCCCEEECCCC
Confidence 56777777777643 333221111223566777777664
No 66
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.48 E-value=2.1e-15 Score=133.86 Aligned_cols=228 Identities=18% Similarity=0.131 Sum_probs=100.8
Q ss_pred CCccEEEeccCCccChhhHHHHHhcCCCCceeeccccccchhh--HHHHhhcCCcccEEEeeccCCCcHHHHHHHhhccc
Q 013172 56 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKG--VHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLS 133 (448)
Q Consensus 56 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 133 (448)
+++++|+++++. ++... ..+...+++|++|++++|.+...+ ...+. .+++|++|+++++.+.....
T Consensus 28 ~~l~~L~L~~n~-l~~i~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~-~~~~L~~L~Ls~n~i~~l~~--------- 95 (306)
T 2z66_A 28 SSATRLELESNK-LQSLP-HGVFDKLTQLTKLSLSSNGLSFKGCCSQSDF-GTTSLKYLDLSFNGVITMSS--------- 95 (306)
T ss_dssp TTCCEEECCSSC-CCCCC-TTTTTTCTTCSEEECCSSCCCEEEEEEHHHH-SCSCCCEEECCSCSEEEEEE---------
T ss_pred CCCCEEECCCCc-cCccC-HhHhhccccCCEEECCCCccCcccCcccccc-cccccCEEECCCCccccChh---------
Confidence 567777777764 44222 122245677777777777665332 12222 36677777776665432100
Q ss_pred cccccccccccCChhHHHHHhhcCCCCCEEeecCCccCChhhHHHHHhcCCCCcEEEecCCCCCChhhHHHHhhcCCCcc
Q 013172 134 LELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLT 213 (448)
Q Consensus 134 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 213 (448)
....+++|++|+++++. +...........+++|+.|+++++. +...... ....+++|+
T Consensus 96 -------------------~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~ 153 (306)
T 2z66_A 96 -------------------NFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNG-IFNGLSSLE 153 (306)
T ss_dssp -------------------EEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSC-CEECSTT-TTTTCTTCC
T ss_pred -------------------hcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCc-CCccchh-hcccCcCCC
Confidence 01123455555555543 1111100112234556666555532 2111111 112235566
Q ss_pred eEecccccccCchhHHHHhccCcCCceEeccCCcCcChHHHHHHHHhCCCCcEEEccccccccCchHhHhhhcCCCCcEE
Q 013172 214 ELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTEL 293 (448)
Q Consensus 214 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 293 (448)
+|+++++ .+........+..+++|+.|+++++. +...... .+..+++|++|+++++. ++...... ...+++|++|
T Consensus 154 ~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~-~~~~l~~L~~L~L~~N~-l~~~~~~~-~~~l~~L~~L 228 (306)
T 2z66_A 154 VLKMAGN-SFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPT-AFNSLSSLQVLNMSHNN-FFSLDTFP-YKCLNSLQVL 228 (306)
T ss_dssp EEECTTC-EEGGGEECSCCTTCTTCCEEECTTSC-CCEECTT-TTTTCTTCCEEECTTSC-CSBCCSGG-GTTCTTCCEE
T ss_pred EEECCCC-ccccccchhHHhhCcCCCEEECCCCC-cCCcCHH-HhcCCCCCCEEECCCCc-cCccChhh-ccCcccCCEe
Confidence 6666553 22211111222345556666665532 2221111 11235566666666542 22221111 2345666666
Q ss_pred eccccCCcCchHHHhhccCC-CccEEeeeCc
Q 013172 294 SLRFCDRVGDEALISIGQGC-SLQHLNVSGC 323 (448)
Q Consensus 294 ~l~~~~~~~~~~~~~l~~~~-~L~~L~l~~~ 323 (448)
+++++ .+.......+...+ +|+.|+++++
T Consensus 229 ~L~~N-~l~~~~~~~~~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 229 DYSLN-HIMTSKKQELQHFPSSLAFLNLTQN 258 (306)
T ss_dssp ECTTS-CCCBCSSSSCCCCCTTCCEEECTTC
T ss_pred ECCCC-CCcccCHHHHHhhhccCCEEEccCC
Confidence 66653 34433333344432 4555555553
No 67
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.47 E-value=1.6e-13 Score=107.74 Aligned_cols=106 Identities=12% Similarity=0.138 Sum_probs=91.0
Q ss_pred CCCcEEeccccCCcCchHHHhhccCCCccEEeeeCccccChHHHHHHHhh---CCCCCEEeccCcCCCCHHHHHHHhcCC
Q 013172 288 NSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKG---CPELNYLDVSVLQNLGDQAMVELGKGC 364 (448)
Q Consensus 288 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~---~~~L~~L~l~~~~~l~~~~~~~~~~~~ 364 (448)
..|++|++++|. +++.++..+...++|++|++++|..+++.++..+... +++|++|++++|+.++|.++..+. .+
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~-~~ 138 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH-HF 138 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG-GC
T ss_pred ceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh-cC
Confidence 468999999986 9999999998878899999999999999999888752 568999999999899999999886 48
Q ss_pred CCCcEEeccCCCCCChHH--HHHHHHcCccCce
Q 013172 365 PLLKDVVLSHCRQITDVG--LSHLVKNCRMLES 395 (448)
Q Consensus 365 ~~L~~L~l~~c~~l~~~~--~~~~~~~~~~L~~ 395 (448)
++|++|++++|+.+++.+ ...+.+.+|+++.
T Consensus 139 ~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V 171 (176)
T 3e4g_A 139 RNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL 171 (176)
T ss_dssp TTCCEEEEESCTTCCCHHHHHHHHHHHCTTCEE
T ss_pred CCCCEEECCCCCCCCchHHHHHHHHHHCCCcEE
Confidence 999999999999999876 4556667888664
No 68
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.46 E-value=1.6e-14 Score=128.99 Aligned_cols=230 Identities=17% Similarity=0.163 Sum_probs=106.1
Q ss_pred CCccEEEeccCCccChhhHHHHHhcCCCCceeeccccccchhhHHHHhhcCCcccEEEeeccCCCcHHHHHHHhhccccc
Q 013172 56 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLE 135 (448)
Q Consensus 56 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 135 (448)
+.+++|+++++. ++... .. ...+++|++|++++|.+. .+...+..+++|++|++++|.+... +..+ ..+++|+
T Consensus 81 ~~l~~L~L~~n~-l~~lp-~~-l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~~l-p~~l-~~l~~L~ 153 (328)
T 4fcg_A 81 PGRVALELRSVP-LPQFP-DQ-AFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLRAL-PASI-ASLNRLR 153 (328)
T ss_dssp TTCCEEEEESSC-CSSCC-SC-GGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCCCC-CGGG-GGCTTCC
T ss_pred cceeEEEccCCC-chhcC-hh-hhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccccC-cHHH-hcCcCCC
Confidence 566777776654 33211 11 233666777777666665 2222223466677777766655421 1122 2255566
Q ss_pred cccccccccCChhHHHHHhhcCCCCCEEeecCCccCChhhHHHHHhcCCCCcEEEecCCCCCChhhHHHHhhcCCCcceE
Q 013172 136 LLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTEL 215 (448)
Q Consensus 136 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L 215 (448)
+|+++++..... ++. .+....+.+ ....+++|+.|+++++. +.. +......+++|++|
T Consensus 154 ~L~L~~n~~~~~--~p~------~~~~~~~~~-----------~~~~l~~L~~L~L~~n~-l~~--lp~~l~~l~~L~~L 211 (328)
T 4fcg_A 154 ELSIRACPELTE--LPE------PLASTDASG-----------EHQGLVNLQSLRLEWTG-IRS--LPASIANLQNLKSL 211 (328)
T ss_dssp EEEEEEETTCCC--CCS------CSEEEC-CC-----------CEEESTTCCEEEEEEEC-CCC--CCGGGGGCTTCCEE
T ss_pred EEECCCCCCccc--cCh------hHhhccchh-----------hhccCCCCCEEECcCCC-cCc--chHhhcCCCCCCEE
Confidence 666555332211 000 000000000 01124555555555432 221 11112223555555
Q ss_pred ecccccccCchhHHHHhccCcCCceEeccCCcCcChHHHHHHHHhCCCCcEEEccccccccCchHhHhhhcCCCCcEEec
Q 013172 216 ALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSL 295 (448)
Q Consensus 216 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 295 (448)
+++++ .+.... ..+..+++|+.|++++|...... ......+++|+.|++.+|...+. ++.....+++|++|++
T Consensus 212 ~L~~N-~l~~l~--~~l~~l~~L~~L~Ls~n~~~~~~--p~~~~~l~~L~~L~L~~n~~~~~--~p~~~~~l~~L~~L~L 284 (328)
T 4fcg_A 212 KIRNS-PLSALG--PAIHHLPKLEELDLRGCTALRNY--PPIFGGRAPLKRLILKDCSNLLT--LPLDIHRLTQLEKLDL 284 (328)
T ss_dssp EEESS-CCCCCC--GGGGGCTTCCEEECTTCTTCCBC--CCCTTCCCCCCEEECTTCTTCCB--CCTTGGGCTTCCEEEC
T ss_pred EccCC-CCCcCc--hhhccCCCCCEEECcCCcchhhh--HHHhcCCCCCCEEECCCCCchhh--cchhhhcCCCCCEEeC
Confidence 55553 222111 12344566666666654332211 11123466777777776543322 1122345777777777
Q ss_pred cccCCcCchHHHhhccCCCccEEeeeC
Q 013172 296 RFCDRVGDEALISIGQGCSLQHLNVSG 322 (448)
Q Consensus 296 ~~~~~~~~~~~~~l~~~~~L~~L~l~~ 322 (448)
++|.. .......+..+++|+.+.+..
T Consensus 285 ~~n~~-~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 285 RGCVN-LSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp TTCTT-CCCCCGGGGGSCTTCEEECCG
T ss_pred CCCCc-hhhccHHHhhccCceEEeCCH
Confidence 77643 334445566666777777664
No 69
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.45 E-value=1.1e-14 Score=130.11 Aligned_cols=180 Identities=19% Similarity=0.257 Sum_probs=112.3
Q ss_pred cCCCCCEEeecCCccCChhhHHHHHhcCCCCcEEEecCCCCCChhhHH-------HHhhcCCCcceEecccccccCchhH
Q 013172 156 GCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLE-------SIGKFCRNLTELALLYCQRIGNLAL 228 (448)
Q Consensus 156 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-------~l~~~~~~L~~L~l~~~~~~~~~~~ 228 (448)
.+++|++|+++++. +.. +......+++|+.|++++|......... .....+++|+.|+++++ .+.. +
T Consensus 125 ~l~~L~~L~Ls~n~-l~~--lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~--l 198 (328)
T 4fcg_A 125 QFAGLETLTLARNP-LRA--LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRS--L 198 (328)
T ss_dssp GGTTCSEEEEESCC-CCC--CCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCC--C
T ss_pred ccCCCCEEECCCCc-ccc--CcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCc--c
Confidence 34555555555553 221 1112334566666666654332221100 00123689999999985 4442 2
Q ss_pred HHHhccCcCCceEeccCCcCcChHHHHHHHHhCCCCcEEEccccccccCchHhHhhhcCCCCcEEeccccCCcCchHHHh
Q 013172 229 LEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALIS 308 (448)
Q Consensus 229 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 308 (448)
...+..+++|+.|+++++. +.. +......+++|+.|++++|...+. +......+++|++|++++|... ......
T Consensus 199 p~~l~~l~~L~~L~L~~N~-l~~--l~~~l~~l~~L~~L~Ls~n~~~~~--~p~~~~~l~~L~~L~L~~n~~~-~~~p~~ 272 (328)
T 4fcg_A 199 PASIANLQNLKSLKIRNSP-LSA--LGPAIHHLPKLEELDLRGCTALRN--YPPIFGGRAPLKRLILKDCSNL-LTLPLD 272 (328)
T ss_dssp CGGGGGCTTCCEEEEESSC-CCC--CCGGGGGCTTCCEEECTTCTTCCB--CCCCTTCCCCCCEEECTTCTTC-CBCCTT
T ss_pred hHhhcCCCCCCEEEccCCC-CCc--CchhhccCCCCCEEECcCCcchhh--hHHHhcCCCCCCEEECCCCCch-hhcchh
Confidence 2335678999999999864 332 111245689999999999754332 2233456899999999997643 344455
Q ss_pred hccCCCccEEeeeCccccChHHHHHHHhhCCCCCEEeccCc
Q 013172 309 IGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVL 349 (448)
Q Consensus 309 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 349 (448)
+..+++|++|++++|+..+. +......+++|+.+++...
T Consensus 273 ~~~l~~L~~L~L~~n~~~~~--iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 273 IHRLTQLEKLDLRGCVNLSR--LPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp GGGCTTCCEEECTTCTTCCC--CCGGGGGSCTTCEEECCGG
T ss_pred hhcCCCCCEEeCCCCCchhh--ccHHHhhccCceEEeCCHH
Confidence 77778999999999765543 3344557899999998865
No 70
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.45 E-value=1.9e-14 Score=134.85 Aligned_cols=35 Identities=20% Similarity=0.065 Sum_probs=14.4
Q ss_pred CCCCcEEeccccCCcCchHHHhhccCCCccEEeeeC
Q 013172 287 CNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSG 322 (448)
Q Consensus 287 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 322 (448)
+++|++|+++++ .++......+..+++|+.|++.+
T Consensus 265 l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~ 299 (452)
T 3zyi_A 265 LASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHH 299 (452)
T ss_dssp CTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCS
T ss_pred CCCCCEEECCCC-cCCccChHHhccccCCCEEEccC
Confidence 445555555443 23322222233333444444444
No 71
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.45 E-value=1.9e-14 Score=134.49 Aligned_cols=62 Identities=23% Similarity=0.287 Sum_probs=28.9
Q ss_pred CCccEEEeccCCccChhhHHHHHhcCCCCceeeccccccchhhHHHHhhcCCcccEEEeeccCCC
Q 013172 56 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVT 120 (448)
Q Consensus 56 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 120 (448)
++++.|+++++. ++......+ ..+++|++|++++|.+.......+ ..+++|++|++++|.+.
T Consensus 64 ~~l~~L~L~~n~-i~~~~~~~~-~~l~~L~~L~Ls~n~i~~i~~~~~-~~l~~L~~L~L~~n~l~ 125 (440)
T 3zyj_A 64 TNTRLLNLHENQ-IQIIKVNSF-KHLRHLEILQLSRNHIRTIEIGAF-NGLANLNTLELFDNRLT 125 (440)
T ss_dssp TTCSEEECCSCC-CCEECTTTT-SSCSSCCEEECCSSCCCEECGGGG-TTCSSCCEEECCSSCCS
T ss_pred CCCcEEEccCCc-CCeeCHHHh-hCCCCCCEEECCCCcCCccChhhc-cCCccCCEEECCCCcCC
Confidence 455556665543 333222222 345555555555555543332222 23555555555555443
No 72
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.45 E-value=1.2e-15 Score=135.46 Aligned_cols=251 Identities=14% Similarity=0.050 Sum_probs=134.6
Q ss_pred CCccEEEeccCCccCh--hhHHHHHhcCCCCceeeccc-cccchhhHHHHhhcCCcccEEEeeccCCCcHHHHHHHhhcc
Q 013172 56 KSLKSLGIAACVKITD--VSLEAVGSHCKSLETLSLDS-EFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCL 132 (448)
Q Consensus 56 ~~L~~L~l~~~~~~~~--~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 132 (448)
.++++|+++++. ++. .... ....+++|++|++++ +.+.......+ ..+++|++|+++++.+....+..+. .++
T Consensus 50 ~~l~~L~L~~~~-l~~~~~~~~-~l~~l~~L~~L~L~~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~ 125 (313)
T 1ogq_A 50 YRVNNLDLSGLN-LPKPYPIPS-SLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLS-QIK 125 (313)
T ss_dssp CCEEEEEEECCC-CSSCEECCG-GGGGCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEECCEEECCGGGG-GCT
T ss_pred ceEEEEECCCCC-ccCCcccCh-hHhCCCCCCeeeCCCCCcccccCChhH-hcCCCCCEEECcCCeeCCcCCHHHh-CCC
Confidence 357777777654 332 1112 234567777777763 55543332233 3467777777776666533333333 367
Q ss_pred ccccccccccccCChhHHHHHhhcCCCCCEEeecCCccCChhhHHHHHhcCC-CCcEEEecCCCCCChhhHHHHhhcCCC
Q 013172 133 SLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCK-ELTHLEINGCHNIGTMGLESIGKFCRN 211 (448)
Q Consensus 133 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~l~~~~~~ 211 (448)
+|++|+++++. +.. .++..+..+++|++|+++++. +... +......++ +|+.|+++++. +.......+.. ++
T Consensus 126 ~L~~L~Ls~N~-l~~-~~p~~~~~l~~L~~L~L~~N~-l~~~-~p~~l~~l~~~L~~L~L~~N~-l~~~~~~~~~~-l~- 198 (313)
T 1ogq_A 126 TLVTLDFSYNA-LSG-TLPPSISSLPNLVGITFDGNR-ISGA-IPDSYGSFSKLFTSMTISRNR-LTGKIPPTFAN-LN- 198 (313)
T ss_dssp TCCEEECCSSE-EES-CCCGGGGGCTTCCEEECCSSC-CEEE-CCGGGGCCCTTCCEEECCSSE-EEEECCGGGGG-CC-
T ss_pred CCCEEeCCCCc-cCC-cCChHHhcCCCCCeEECcCCc-ccCc-CCHHHhhhhhcCcEEECcCCe-eeccCChHHhC-Cc-
Confidence 77777776542 211 112223456788888887775 2211 111122455 78888887743 32221222222 23
Q ss_pred cceEecccccccCchhHHHHhccCcCCceEeccCCcCcChHHHHHHHHhCCCCcEEEccccccccCchHhHhhhcCCCCc
Q 013172 212 LTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLT 291 (448)
Q Consensus 212 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 291 (448)
|+.|+++++ .+... ....+..+++|+.|+++++. +.... .. ...+++|++|+++++. ++.. ++.....+++|+
T Consensus 199 L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~L~L~~N~-l~~~~-~~-~~~l~~L~~L~Ls~N~-l~~~-~p~~l~~l~~L~ 271 (313)
T 1ogq_A 199 LAFVDLSRN-MLEGD-ASVLFGSDKNTQKIHLAKNS-LAFDL-GK-VGLSKNLNGLDLRNNR-IYGT-LPQGLTQLKFLH 271 (313)
T ss_dssp CSEEECCSS-EEEEC-CGGGCCTTSCCSEEECCSSE-ECCBG-GG-CCCCTTCCEEECCSSC-CEEC-CCGGGGGCTTCC
T ss_pred ccEEECcCC-cccCc-CCHHHhcCCCCCEEECCCCc-eeeec-Cc-ccccCCCCEEECcCCc-ccCc-CChHHhcCcCCC
Confidence 888888774 33322 12334567888888888753 22111 11 2346788888888754 4322 222334678888
Q ss_pred EEeccccCCcCchHHHhhccCCCccEEeeeCcccc
Q 013172 292 ELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQI 326 (448)
Q Consensus 292 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 326 (448)
+|+++++. ++.... ....+++|+.+++.+++.+
T Consensus 272 ~L~Ls~N~-l~~~ip-~~~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 272 SLNVSFNN-LCGEIP-QGGNLQRFDVSAYANNKCL 304 (313)
T ss_dssp EEECCSSE-EEEECC-CSTTGGGSCGGGTCSSSEE
T ss_pred EEECcCCc-ccccCC-CCccccccChHHhcCCCCc
Confidence 88888853 432222 2244456888888775543
No 73
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.45 E-value=3.2e-15 Score=132.80 Aligned_cols=252 Identities=17% Similarity=0.112 Sum_probs=145.8
Q ss_pred CCCceeeccccccch--hhHHHHhhcCCcccEEEee-ccCCCcHHHHHHHhhccccccccccccccCChhHHHHHhhcCC
Q 013172 82 KSLETLSLDSEFIHN--KGVHAVAQGCPLLRVLKLQ-CINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCK 158 (448)
Q Consensus 82 ~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 158 (448)
.++++|+++++.+.. .... .+..+++|++|+++ ++.+....+..+. .+++|++|+++++. +.. .++..+..++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~-~l~~l~~L~~L~L~~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~-l~~-~~p~~~~~l~ 125 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPS-SLANLPYLNFLYIGGINNLVGPIPPAIA-KLTQLHYLYITHTN-VSG-AIPDFLSQIK 125 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCG-GGGGCTTCSEEEEEEETTEESCCCGGGG-GCTTCSEEEEEEEC-CEE-ECCGGGGGCT
T ss_pred ceEEEEECCCCCccCCcccCh-hHhCCCCCCeeeCCCCCcccccCChhHh-cCCCCCEEECcCCe-eCC-cCCHHHhCCC
Confidence 578888888887764 2222 33457888888887 3665543333343 37888888887643 221 1222344678
Q ss_pred CCCEEeecCCccCChhhHHHHHhcCCCCcEEEecCCCCCChhhHHHHhhcCCCcceEecccccccCchhHHHHhccCcCC
Q 013172 159 KLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSL 238 (448)
Q Consensus 159 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 238 (448)
+|++|+++++..... +......+++|++|++.++. +.......+....++|+.|+++++ .+..... ..+..++ |
T Consensus 126 ~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~~L~~L~L~~N-~l~~~~~-~~~~~l~-L 199 (313)
T 1ogq_A 126 TLVTLDFSYNALSGT--LPPSISSLPNLVGITFDGNR-ISGAIPDSYGSFSKLFTSMTISRN-RLTGKIP-PTFANLN-L 199 (313)
T ss_dssp TCCEEECCSSEEESC--CCGGGGGCTTCCEEECCSSC-CEEECCGGGGCCCTTCCEEECCSS-EEEEECC-GGGGGCC-C
T ss_pred CCCEEeCCCCccCCc--CChHHhcCCCCCeEECcCCc-ccCcCCHHHhhhhhcCcEEECcCC-eeeccCC-hHHhCCc-c
Confidence 888888888752211 11223457888888888743 332222233333238888888874 2322111 1223344 8
Q ss_pred ceEeccCCcCcChHHHHHHHHhCCCCcEEEccccccccCchHhHhhhcCCCCcEEeccccCCcCchHHHhhccCCCccEE
Q 013172 239 QALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCSLQHL 318 (448)
Q Consensus 239 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 318 (448)
+.|+++++. +.... ...+..+++|+.|+++++. ++... .. ...+++|++|+++++ .+.+.....+...++|+.|
T Consensus 200 ~~L~Ls~N~-l~~~~-~~~~~~l~~L~~L~L~~N~-l~~~~-~~-~~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L 273 (313)
T 1ogq_A 200 AFVDLSRNM-LEGDA-SVLFGSDKNTQKIHLAKNS-LAFDL-GK-VGLSKNLNGLDLRNN-RIYGTLPQGLTQLKFLHSL 273 (313)
T ss_dssp SEEECCSSE-EEECC-GGGCCTTSCCSEEECCSSE-ECCBG-GG-CCCCTTCCEEECCSS-CCEECCCGGGGGCTTCCEE
T ss_pred cEEECcCCc-ccCcC-CHHHhcCCCCCEEECCCCc-eeeec-Cc-ccccCCCCEEECcCC-cccCcCChHHhcCcCCCEE
Confidence 888888753 22211 1223447788888888753 33221 11 345688888888875 3554455566677778888
Q ss_pred eeeCccccChHHHHHHHhhCCCCCEEeccCcCCC
Q 013172 319 NVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNL 352 (448)
Q Consensus 319 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 352 (448)
+++++ .++.. +... ..+++|+.+++.+++.+
T Consensus 274 ~Ls~N-~l~~~-ip~~-~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 274 NVSFN-NLCGE-IPQG-GNLQRFDVSAYANNKCL 304 (313)
T ss_dssp ECCSS-EEEEE-CCCS-TTGGGSCGGGTCSSSEE
T ss_pred ECcCC-ccccc-CCCC-ccccccChHHhcCCCCc
Confidence 88875 33321 1111 35677888888887544
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.44 E-value=3.8e-14 Score=133.59 Aligned_cols=59 Identities=22% Similarity=0.274 Sum_probs=32.1
Q ss_pred CccEEEeccCCccChhhHHHHHhcCCCCceeeccccccchhhHHHHhhcCCcccEEEeeccCCC
Q 013172 57 SLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVT 120 (448)
Q Consensus 57 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 120 (448)
+|++|++++|. ++......+ ..+++|++|++++|.++.... +..+++|++|++++|.++
T Consensus 35 ~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~ 93 (487)
T 3oja_A 35 NVKELDLSGNP-LSQISAADL-APFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQ 93 (487)
T ss_dssp GCCEEECCSSC-CCCCCGGGG-TTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEE
T ss_pred CccEEEeeCCc-CCCCCHHHH-hCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCC
Confidence 56777776653 433222222 456667777776666543221 334566666666665554
No 75
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.44 E-value=9.2e-15 Score=137.82 Aligned_cols=243 Identities=14% Similarity=0.104 Sum_probs=156.2
Q ss_pred hhccccCCcceeeeccccccChhHHHHHHhhhCCCccEEEeccCCccChhhHHHHHhcCCCCceeeccccccchhhHHHH
Q 013172 23 AVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAV 102 (448)
Q Consensus 23 ~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 102 (448)
.+...+++|+.|+++++ .+.......+ ..+ ++|++|++++|. ++.... ...+++|++|++++|.++...
T Consensus 28 ~l~~~~~~L~~L~Ls~n-~l~~~~~~~~-~~l-~~L~~L~Ls~N~-l~~~~~---l~~l~~L~~L~Ls~N~l~~l~---- 96 (487)
T 3oja_A 28 SLRQSAWNVKELDLSGN-PLSQISAADL-APF-TKLELLNLSSNV-LYETLD---LESLSTLRTLDLNNNYVQELL---- 96 (487)
T ss_dssp TTSTTGGGCCEEECCSS-CCCCCCGGGG-TTC-TTCCEEECTTSC-CEEEEE---CTTCTTCCEEECCSSEEEEEE----
T ss_pred HhcccCCCccEEEeeCC-cCCCCCHHHH-hCC-CCCCEEEeeCCC-CCCCcc---cccCCCCCEEEecCCcCCCCC----
Confidence 33444568999999988 4444322222 233 789999999985 443222 457899999999998876532
Q ss_pred hhcCCcccEEEeeccCCCcHHHHHHHhhccccccccccccccCChhHHHHHhhcCCCCCEEeecCCccCChhhHHHHHhc
Q 013172 103 AQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATG 182 (448)
Q Consensus 103 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 182 (448)
..++|++|++++|.+..... ..+++|+.|+++++. +... .+..+..+++|+.|+++++. +.......+...
T Consensus 97 --~~~~L~~L~L~~N~l~~~~~----~~l~~L~~L~L~~N~-l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~~ 167 (487)
T 3oja_A 97 --VGPSIETLHAANNNISRVSC----SRGQGKKNIYLANNK-ITML-RDLDEGCRSRVQYLDLKLNE-IDTVNFAELAAS 167 (487)
T ss_dssp --ECTTCCEEECCSSCCCCEEE----CCCSSCEEEECCSSC-CCSG-GGBCGGGGSSEEEEECTTSC-CCEEEGGGGGGG
T ss_pred --CCCCcCEEECcCCcCCCCCc----cccCCCCEEECCCCC-CCCC-CchhhcCCCCCCEEECCCCC-CCCcChHHHhhh
Confidence 24789999998888775432 236889999998753 3322 12223457899999999886 444334444446
Q ss_pred CCCCcEEEecCCCCCChhhHHHHhhcCCCcceEecccccccCchhHHHHhccCcCCceEeccCCcCcChHHHHHHHHhCC
Q 013172 183 CKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQ 262 (448)
Q Consensus 183 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 262 (448)
+++|+.|+++++. +.... ... .+++|+.|+++++ .+...+.. +..+++|+.|+++++. +.. +......++
T Consensus 168 l~~L~~L~Ls~N~-l~~~~--~~~-~l~~L~~L~Ls~N-~l~~~~~~--~~~l~~L~~L~Ls~N~-l~~--lp~~l~~l~ 237 (487)
T 3oja_A 168 SDTLEHLNLQYNF-IYDVK--GQV-VFAKLKTLDLSSN-KLAFMGPE--FQSAAGVTWISLRNNK-LVL--IEKALRFSQ 237 (487)
T ss_dssp TTTCCEEECTTSC-CCEEE--CCC-CCTTCCEEECCSS-CCCEECGG--GGGGTTCSEEECTTSC-CCE--ECTTCCCCT
T ss_pred CCcccEEecCCCc-ccccc--ccc-cCCCCCEEECCCC-CCCCCCHh--HcCCCCccEEEecCCc-Ccc--cchhhccCC
Confidence 7899999998854 43321 111 3589999999884 44443221 4567899999999853 432 112234468
Q ss_pred CCcEEEccccccccCchHhHhhhcCCCCcEEecc
Q 013172 263 NLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLR 296 (448)
Q Consensus 263 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 296 (448)
+|+.|++.+++ +....+......++.|+.+.+.
T Consensus 238 ~L~~L~l~~N~-l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 238 NLEHFDLRGNG-FHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp TCCEEECTTCC-BCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCEEEcCCCC-CcCcchHHHHHhCCCCcEEecc
Confidence 89999998864 4433444445556777766664
No 76
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.44 E-value=8.9e-15 Score=128.34 Aligned_cols=205 Identities=19% Similarity=0.153 Sum_probs=93.9
Q ss_pred CCccEEEeccCCccChhhHHHHHhcCCCCceeeccccccchhhHHHHhhcCCcccEEEeeccC-CCcHHHHHHHhhcccc
Q 013172 56 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCIN-VTDEALVAVGNQCLSL 134 (448)
Q Consensus 56 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L 134 (448)
+++++|+++++. ++......+ ..+++|++|++++|.+.......+ ..+++|++|+++++. +.......+ ..+++|
T Consensus 32 ~~l~~L~l~~n~-i~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~~l~~~~~~~~-~~l~~L 107 (285)
T 1ozn_A 32 AASQRIFLHGNR-ISHVPAASF-RACRNLTILWLHSNVLARIDAAAF-TGLALLEQLDLSDNAQLRSVDPATF-HGLGRL 107 (285)
T ss_dssp TTCSEEECTTSC-CCEECTTTT-TTCTTCCEEECCSSCCCEECTTTT-TTCTTCCEEECCSCTTCCCCCTTTT-TTCTTC
T ss_pred CCceEEEeeCCc-CCccCHHHc-ccCCCCCEEECCCCccceeCHhhc-CCccCCCEEeCCCCCCccccCHHHh-cCCcCC
Confidence 345555555543 332221111 334555555555554443222222 234555555555543 332212222 124555
Q ss_pred ccccccccccCChhHHHHHhhcCCCCCEEeecCCccCChhhHHHHHhcCCCCcEEEecCCCCCChhhHHHHhhcCCCcce
Q 013172 135 ELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTE 214 (448)
Q Consensus 135 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 214 (448)
++|+++++. +... .+..+..+++|++|+++++. +..... .....+++|+.|+++++ .+.......+. .+++|+.
T Consensus 108 ~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~~~-~l~~L~~ 181 (285)
T 1ozn_A 108 HTLHLDRCG-LQEL-GPGLFRGLAALQYLYLQDNA-LQALPD-DTFRDLGNLTHLFLHGN-RISSVPERAFR-GLHSLDR 181 (285)
T ss_dssp CEEECTTSC-CCCC-CTTTTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSS-CCCEECTTTTT-TCTTCCE
T ss_pred CEEECCCCc-CCEE-CHhHhhCCcCCCEEECCCCc-ccccCH-hHhccCCCccEEECCCC-cccccCHHHhc-CccccCE
Confidence 555555432 2111 11122345666666666654 222111 11234567777777663 23322211122 2467777
Q ss_pred EecccccccCchhHHHHhccCcCCceEeccCCcCcChHHHHHHHHhCCCCcEEEcccccc
Q 013172 215 LALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYK 274 (448)
Q Consensus 215 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 274 (448)
|+++++ .+..... ..+..+++|+.|+++++. +..... .....+++|+.|++.+++-
T Consensus 182 L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 182 LLLHQN-RVAHVHP-HAFRDLGRLMTLYLFANN-LSALPT-EALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp EECCSS-CCCEECT-TTTTTCTTCCEEECCSSC-CSCCCH-HHHTTCTTCCEEECCSSCE
T ss_pred EECCCC-cccccCH-hHccCcccccEeeCCCCc-CCcCCH-HHcccCcccCEEeccCCCc
Confidence 777763 3333221 223456777777777743 333222 2234577788888777643
No 77
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.42 E-value=2.7e-14 Score=133.37 Aligned_cols=228 Identities=17% Similarity=0.146 Sum_probs=151.5
Q ss_pred CCcceeeeccccccChhHHHHHHhhhCCCccEEEeccCCccChhhHHHHHhcCCCCceeeccccccchhhHHHHhhcCCc
Q 013172 29 NQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPL 108 (448)
Q Consensus 29 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 108 (448)
++++.|+|+++ .+.......+ ..+ ++|++|++++|. ++...... ...+++|++|++++|.++..... .+..+++
T Consensus 64 ~~l~~L~L~~n-~i~~~~~~~~-~~l-~~L~~L~Ls~n~-i~~i~~~~-~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~ 137 (440)
T 3zyj_A 64 TNTRLLNLHEN-QIQIIKVNSF-KHL-RHLEILQLSRNH-IRTIEIGA-FNGLANLNTLELFDNRLTTIPNG-AFVYLSK 137 (440)
T ss_dssp TTCSEEECCSC-CCCEECTTTT-SSC-SSCCEEECCSSC-CCEECGGG-GTTCSSCCEEECCSSCCSSCCTT-TSCSCSS
T ss_pred CCCcEEEccCC-cCCeeCHHHh-hCC-CCCCEEECCCCc-CCccChhh-ccCCccCCEEECCCCcCCeeCHh-Hhhcccc
Confidence 67899999988 4544332222 233 789999999975 55443333 35689999999999988754332 3346889
Q ss_pred ccEEEeeccCCCcHHHHHHHhhccccccccccccccCChhHHHHHhhcCCCCCEEeecCCccCChhhHHHHHhcCCCCcE
Q 013172 109 LRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTH 188 (448)
Q Consensus 109 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 188 (448)
|++|++++|.+.......+ ..+++|++|+++++..+.... ...+..+++|+.|+++++. +.... . ...+++|+.
T Consensus 138 L~~L~L~~N~i~~~~~~~~-~~l~~L~~L~l~~~~~l~~i~-~~~~~~l~~L~~L~L~~n~-l~~~~--~-~~~l~~L~~ 211 (440)
T 3zyj_A 138 LKELWLRNNPIESIPSYAF-NRIPSLRRLDLGELKRLSYIS-EGAFEGLSNLRYLNLAMCN-LREIP--N-LTPLIKLDE 211 (440)
T ss_dssp CCEEECCSCCCCEECTTTT-TTCTTCCEEECCCCTTCCEEC-TTTTTTCSSCCEEECTTSC-CSSCC--C-CTTCSSCCE
T ss_pred CceeeCCCCcccccCHHHh-hhCcccCEeCCCCCCCcceeC-cchhhcccccCeecCCCCc-Ccccc--c-cCCCcccCE
Confidence 9999999988875433333 348999999998765443221 1234467999999999986 33221 1 345789999
Q ss_pred EEecCCCCCChhhHHHHhhcCCCcceEecccccccCchhHHHHhccCcCCceEeccCCcCcChHHHHHHHHhCCCCcEEE
Q 013172 189 LEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLH 268 (448)
Q Consensus 189 L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 268 (448)
|+++++ .+.......+. .+++|+.|++.++ .+..... ..+..+++|+.|+++++ .+..... ..+..+++|+.|+
T Consensus 212 L~Ls~N-~l~~~~~~~~~-~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~ 285 (440)
T 3zyj_A 212 LDLSGN-HLSAIRPGSFQ-GLMHLQKLWMIQS-QIQVIER-NAFDNLQSLVEINLAHN-NLTLLPH-DLFTPLHHLERIH 285 (440)
T ss_dssp EECTTS-CCCEECTTTTT-TCTTCCEEECTTC-CCCEECT-TSSTTCTTCCEEECTTS-CCCCCCT-TTTSSCTTCCEEE
T ss_pred EECCCC-ccCccChhhhc-cCccCCEEECCCC-ceeEECh-hhhcCCCCCCEEECCCC-CCCccCh-hHhccccCCCEEE
Confidence 999985 44443333333 3589999999884 4444332 23356899999999985 3442221 2234578999999
Q ss_pred cccccc
Q 013172 269 IRRCYK 274 (448)
Q Consensus 269 l~~~~~ 274 (448)
+.+++-
T Consensus 286 L~~Np~ 291 (440)
T 3zyj_A 286 LHHNPW 291 (440)
T ss_dssp CCSSCE
T ss_pred cCCCCc
Confidence 998653
No 78
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.42 E-value=5.1e-14 Score=124.99 Aligned_cols=227 Identities=15% Similarity=0.056 Sum_probs=113.7
Q ss_pred CccEEEeccCCccChhhHHHHHh--cCCCCceeeccccccchhhHHHHh-hcCCcccEEEeeccCCCcH----HHHHHHh
Q 013172 57 SLKSLGIAACVKITDVSLEAVGS--HCKSLETLSLDSEFIHNKGVHAVA-QGCPLLRVLKLQCINVTDE----ALVAVGN 129 (448)
Q Consensus 57 ~L~~L~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~----~~~~~~~ 129 (448)
.++.+.+.++. +++..+..+.. .+++|++|++++|.+.......++ ..+++|++|++++|.+... ....+.
T Consensus 65 ~l~~l~l~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~- 142 (310)
T 4glp_A 65 RVRRLTVGAAQ-VPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW- 142 (310)
T ss_dssp CCCEEEECSCC-CBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT-
T ss_pred ceeEEEEeCCc-CCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh-
Confidence 45566666553 44433332221 235566666666655443333332 3456666666666655531 111222
Q ss_pred hccccccccccccccCChhHHHHHhhcCCCCCEEeecCCccCChhhHHH--HHhcCCCCcEEEecCCCCCChh--hHHHH
Q 013172 130 QCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEA--IATGCKELTHLEINGCHNIGTM--GLESI 205 (448)
Q Consensus 130 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~--~~~~l 205 (448)
.+++|++|+++++. +... .+..+..+++|++|+++++......++.. ....+++|++|+++++. +... ....+
T Consensus 143 ~~~~L~~L~Ls~n~-l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l 219 (310)
T 4glp_A 143 LKPGLKVLSIAQAH-SPAF-SCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAAL 219 (310)
T ss_dssp BCSCCCEEEEECCS-SCCC-CTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHH
T ss_pred hccCCCEEEeeCCC-cchh-hHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHH
Confidence 35666666666532 2111 11222345677777777765322222211 11346677777777743 3321 11223
Q ss_pred hhcCCCcceEecccccccCchhHHHH--hccCcCCceEeccCCcCcChHHHHHHHHhCCCCcEEEccccccccCchHhHh
Q 013172 206 GKFCRNLTELALLYCQRIGNLALLEV--GRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAV 283 (448)
Q Consensus 206 ~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 283 (448)
...+++|++|+++++ .+.......+ ...+++|++|+++++. +... .. .-+++|+.|+++++. ++....
T Consensus 220 ~~~l~~L~~L~Ls~N-~l~~~~p~~~~~~~~~~~L~~L~Ls~N~-l~~l--p~--~~~~~L~~L~Ls~N~-l~~~~~--- 289 (310)
T 4glp_A 220 AAAGVQPHSLDLSHN-SLRATVNPSAPRCMWSSALNSLNLSFAG-LEQV--PK--GLPAKLRVLDLSSNR-LNRAPQ--- 289 (310)
T ss_dssp HHHTCCCSSEECTTS-CCCCCCCSCCSSCCCCTTCCCEECCSSC-CCSC--CS--CCCSCCSCEECCSCC-CCSCCC---
T ss_pred HhcCCCCCEEECCCC-CCCccchhhHHhccCcCcCCEEECCCCC-CCch--hh--hhcCCCCEEECCCCc-CCCCch---
Confidence 334577777777773 3333211111 1113688888887743 3311 10 113688888888753 443211
Q ss_pred hhcCCCCcEEecccc
Q 013172 284 GEHCNSLTELSLRFC 298 (448)
Q Consensus 284 ~~~~~~L~~L~l~~~ 298 (448)
...+++|+.|+++++
T Consensus 290 ~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 290 PDELPEVDNLTLDGN 304 (310)
T ss_dssp TTSCCCCSCEECSST
T ss_pred hhhCCCccEEECcCC
Confidence 346788999999884
No 79
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.42 E-value=2.9e-12 Score=113.31 Aligned_cols=129 Identities=17% Similarity=0.201 Sum_probs=68.0
Q ss_pred CCCCcEEeccccCCcCchHHHhhccCCCccEEeeeCccccChHHHHHHHhhCCCCCEEeccCcCCCCHHHHHHHhcCCCC
Q 013172 287 CNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCPL 366 (448)
Q Consensus 287 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 366 (448)
+++|++|+++++. +.+. ..+..+++|+.|+++++ .++.... ...+++|+.|++++| .+++... ...+++
T Consensus 106 l~~L~~L~l~~n~-l~~~--~~l~~l~~L~~L~l~~n-~l~~~~~---l~~l~~L~~L~l~~n-~l~~~~~---l~~l~~ 174 (308)
T 1h6u_A 106 LQSIKTLDLTSTQ-ITDV--TPLAGLSNLQVLYLDLN-QITNISP---LAGLTNLQYLSIGNA-QVSDLTP---LANLSK 174 (308)
T ss_dssp CTTCCEEECTTSC-CCCC--GGGTTCTTCCEEECCSS-CCCCCGG---GGGCTTCCEEECCSS-CCCCCGG---GTTCTT
T ss_pred CCCCCEEECCCCC-CCCc--hhhcCCCCCCEEECCCC-ccCcCcc---ccCCCCccEEEccCC-cCCCChh---hcCCCC
Confidence 4555555555532 3221 22444445555555553 2322111 335666777776666 3333221 245677
Q ss_pred CcEEeccCCCCCChHHHHHHHHcCccCceEeccCCCCCCHHHHHHHHhcCccceEEEEeeeeeccccc
Q 013172 367 LKDVVLSHCRQITDVGLSHLVKNCRMLESCHMVYCPGITAAGVATVVSGCANIKKVMVEKWKVSERTK 434 (448)
Q Consensus 367 L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 434 (448)
|++|+++++ .+++... ...+++|+.|++++|. ++... . +..+++|+.|++++|++.....
T Consensus 175 L~~L~l~~n-~l~~~~~---l~~l~~L~~L~L~~N~-l~~~~--~-l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 175 LTTLKADDN-KISDISP---LASLPNLIEVHLKNNQ-ISDVS--P-LANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp CCEEECCSS-CCCCCGG---GGGCTTCCEEECTTSC-CCBCG--G-GTTCTTCCEEEEEEEEEECCCE
T ss_pred CCEEECCCC-ccCcChh---hcCCCCCCEEEccCCc-cCccc--c-ccCCCCCCEEEccCCeeecCCe
Confidence 777777763 3554332 2356777777777765 32221 1 4567778888887777765433
No 80
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.41 E-value=3.5e-14 Score=133.11 Aligned_cols=228 Identities=20% Similarity=0.161 Sum_probs=152.8
Q ss_pred CCcceeeeccccccChhHHHHHHhhhCCCccEEEeccCCccChhhHHHHHhcCCCCceeeccccccchhhHHHHhhcCCc
Q 013172 29 NQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPL 108 (448)
Q Consensus 29 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 108 (448)
++++.|+|+++ .+.......+ ..+ ++|++|++++|. ++......+ ..+++|++|++++|.++..... .+..+++
T Consensus 75 ~~l~~L~L~~n-~i~~~~~~~~-~~l-~~L~~L~Ls~n~-i~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~ 148 (452)
T 3zyi_A 75 SNTRYLNLMEN-NIQMIQADTF-RHL-HHLEVLQLGRNS-IRQIEVGAF-NGLASLNTLELFDNWLTVIPSG-AFEYLSK 148 (452)
T ss_dssp TTCSEEECCSS-CCCEECTTTT-TTC-TTCCEEECCSSC-CCEECTTTT-TTCTTCCEEECCSSCCSBCCTT-TSSSCTT
T ss_pred CCccEEECcCC-cCceECHHHc-CCC-CCCCEEECCCCc-cCCcChhhc-cCcccCCEEECCCCcCCccChh-hhcccCC
Confidence 68999999988 4544322222 233 789999999985 554433333 5689999999999988754333 3446899
Q ss_pred ccEEEeeccCCCcHHHHHHHhhccccccccccccccCChhHHHHHhhcCCCCCEEeecCCccCChhhHHHHHhcCCCCcE
Q 013172 109 LRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTH 188 (448)
Q Consensus 109 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 188 (448)
|++|++++|.+.......+ ..+++|+.|+++++..+..-. ...+..+++|+.|+++++. +.... . ...+++|+.
T Consensus 149 L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~l~~~~~l~~i~-~~~~~~l~~L~~L~L~~n~-l~~~~--~-~~~l~~L~~ 222 (452)
T 3zyi_A 149 LRELWLRNNPIESIPSYAF-NRVPSLMRLDLGELKKLEYIS-EGAFEGLFNLKYLNLGMCN-IKDMP--N-LTPLVGLEE 222 (452)
T ss_dssp CCEEECCSCCCCEECTTTT-TTCTTCCEEECCCCTTCCEEC-TTTTTTCTTCCEEECTTSC-CSSCC--C-CTTCTTCCE
T ss_pred CCEEECCCCCcceeCHhHH-hcCCcccEEeCCCCCCccccC-hhhccCCCCCCEEECCCCc-ccccc--c-ccccccccE
Confidence 9999999998875433333 348999999998765543321 1234467999999999986 33321 1 345789999
Q ss_pred EEecCCCCCChhhHHHHhhcCCCcceEecccccccCchhHHHHhccCcCCceEeccCCcCcChHHHHHHHHhCCCCcEEE
Q 013172 189 LEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLH 268 (448)
Q Consensus 189 L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 268 (448)
|+++++ .+.......+. .+++|+.|+++++ .+..... ..+..+++|+.|+++++ .+..... ..+..+++|+.|+
T Consensus 223 L~Ls~N-~l~~~~~~~~~-~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~ 296 (452)
T 3zyi_A 223 LEMSGN-HFPEIRPGSFH-GLSSLKKLWVMNS-QVSLIER-NAFDGLASLVELNLAHN-NLSSLPH-DLFTPLRYLVELH 296 (452)
T ss_dssp EECTTS-CCSEECGGGGT-TCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECCSS-CCSCCCT-TSSTTCTTCCEEE
T ss_pred EECcCC-cCcccCccccc-CccCCCEEEeCCC-cCceECH-HHhcCCCCCCEEECCCC-cCCccCh-HHhccccCCCEEE
Confidence 999985 44443333333 3589999999984 4443322 23456899999999986 3432211 2234588999999
Q ss_pred cccccc
Q 013172 269 IRRCYK 274 (448)
Q Consensus 269 l~~~~~ 274 (448)
+.+++-
T Consensus 297 L~~Np~ 302 (452)
T 3zyi_A 297 LHHNPW 302 (452)
T ss_dssp CCSSCE
T ss_pred ccCCCc
Confidence 998753
No 81
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.41 E-value=3.4e-14 Score=124.65 Aligned_cols=208 Identities=16% Similarity=0.140 Sum_probs=139.2
Q ss_pred cCCcceeeeccccccChhHHHHHHhhhCCCccEEEeccCCccChhhHHHHHhcCCCCceeeccccc-cchhhHHHHhhcC
Q 013172 28 CNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEF-IHNKGVHAVAQGC 106 (448)
Q Consensus 28 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~ 106 (448)
.++|++|+++++ .+.......+ ..+ ++|++|+++++. ++......+ ..+++|++|++++|. +....... +..+
T Consensus 31 ~~~l~~L~l~~n-~i~~~~~~~~-~~~-~~L~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~l~~n~~l~~~~~~~-~~~l 104 (285)
T 1ozn_A 31 PAASQRIFLHGN-RISHVPAASF-RAC-RNLTILWLHSNV-LARIDAAAF-TGLALLEQLDLSDNAQLRSVDPAT-FHGL 104 (285)
T ss_dssp CTTCSEEECTTS-CCCEECTTTT-TTC-TTCCEEECCSSC-CCEECTTTT-TTCTTCCEEECCSCTTCCCCCTTT-TTTC
T ss_pred CCCceEEEeeCC-cCCccCHHHc-ccC-CCCCEEECCCCc-cceeCHhhc-CCccCCCEEeCCCCCCccccCHHH-hcCC
Confidence 368999999988 4554332222 233 789999999975 554433333 568999999999986 65443333 3458
Q ss_pred CcccEEEeeccCCCcHHHHHHHhhccccccccccccccCChhHHHHHhhcCCCCCEEeecCCccCChhhHHHHHhcCCCC
Q 013172 107 PLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKEL 186 (448)
Q Consensus 107 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 186 (448)
++|++|+++++.+.......+ ..+++|++|+++++. +... ....+..+++|+.|+++++. +...... ....+++|
T Consensus 105 ~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~-~~~~l~~L 179 (285)
T 1ozn_A 105 GRLHTLHLDRCGLQELGPGLF-RGLAALQYLYLQDNA-LQAL-PDDTFRDLGNLTHLFLHGNR-ISSVPER-AFRGLHSL 179 (285)
T ss_dssp TTCCEEECTTSCCCCCCTTTT-TTCTTCCEEECCSSC-CCCC-CTTTTTTCTTCCEEECCSSC-CCEECTT-TTTTCTTC
T ss_pred cCCCEEECCCCcCCEECHhHh-hCCcCCCEEECCCCc-cccc-CHhHhccCCCccEEECCCCc-ccccCHH-HhcCcccc
Confidence 999999999888875433333 348999999998753 3221 11223467999999999985 4432211 23458999
Q ss_pred cEEEecCCCCCChhhHHHHhhcCCCcceEecccccccCchhHHHHhccCcCCceEeccCCcCcC
Q 013172 187 THLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIG 250 (448)
Q Consensus 187 ~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 250 (448)
+.|++.++ .+.......+. .+++|+.|+++++ .+..... ..+..+++|+.|++++++-..
T Consensus 180 ~~L~l~~n-~l~~~~~~~~~-~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 180 DRLLLHQN-RVAHVHPHAFR-DLGRLMTLYLFAN-NLSALPT-EALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp CEEECCSS-CCCEECTTTTT-TCTTCCEEECCSS-CCSCCCH-HHHTTCTTCCEEECCSSCEEC
T ss_pred CEEECCCC-cccccCHhHcc-CcccccEeeCCCC-cCCcCCH-HHcccCcccCEEeccCCCccC
Confidence 99999985 34443333333 3599999999984 4554333 344678999999999865433
No 82
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.40 E-value=2.9e-12 Score=115.95 Aligned_cols=197 Identities=19% Similarity=0.191 Sum_probs=139.5
Q ss_pred CCcceeeeccccccChhHHHHHHhhhCCCccEEEeccCCccChhhHHHHHhc----CCCCceeeccccccchhhHHHHhh
Q 013172 29 NQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSH----CKSLETLSLDSEFIHNKGVHAVAQ 104 (448)
Q Consensus 29 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~~~~~~~~~ 104 (448)
+..+.+++.+|- .+..-..+.....+.|++|++++|. ++......+... +++|++|++++|.+++.++..+..
T Consensus 47 ~~~~~lnl~~cl--~e~~~~~l~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 123 (372)
T 3un9_A 47 PPSELLDHLFFH--YEFQNQRFSAEVLSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLP 123 (372)
T ss_dssp CHHHHHHHHHHH--HHHHTHHHHHHHHTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHH
T ss_pred ChhhhHHHHHHH--HHhcCHHHHHHHHhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHH
Confidence 444556666552 1111122333333789999999986 777665554432 368999999999999888888877
Q ss_pred cCCcccEEEeeccCCCcHHHHHHHhh----ccccccccccccccCChhHHHHH---hhcCCCCCEEeecCCccCChhhHH
Q 013172 105 GCPLLRVLKLQCINVTDEALVAVGNQ----CLSLELLALYSFQQFTDKGLHAV---GKGCKKLKNLTLSDCYFLSDMGLE 177 (448)
Q Consensus 105 ~~~~L~~L~l~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~ 177 (448)
.+++|++|++++|.+++.....+... .++|++|+++++ .+++.+...+ ...+++|++|++++|. +.+.+..
T Consensus 124 ~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~ 201 (372)
T 3un9_A 124 VFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLE 201 (372)
T ss_dssp HHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHH
T ss_pred HHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHH
Confidence 77899999999999998877776543 478999999986 4666554444 3567899999999987 6666554
Q ss_pred HH---HhcCCCCcEEEecCCCCCChhhHHHHhh---cCCCcceEecccccccCchhHHHHh
Q 013172 178 AI---ATGCKELTHLEINGCHNIGTMGLESIGK---FCRNLTELALLYCQRIGNLALLEVG 232 (448)
Q Consensus 178 ~~---~~~~~~L~~L~l~~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~~~~~~~~~~~~ 232 (448)
.+ ....++|+.|++++| .+++.+...+.. .+++|++|++++ +.+++.+...+.
T Consensus 202 ~L~~~L~~~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~-N~i~~~g~~~L~ 260 (372)
T 3un9_A 202 LLAAQLDRNRQLQELNVAYN-GAGDTAALALARAAREHPSLELLHLYF-NELSSEGRQVLR 260 (372)
T ss_dssp HHHHHGGGCSCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTT-SSCCHHHHHHHH
T ss_pred HHHHHHhcCCCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccC-CCCCHHHHHHHH
Confidence 44 345679999999985 577766555433 458999999998 457766655443
No 83
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.39 E-value=1.7e-12 Score=117.47 Aligned_cols=174 Identities=22% Similarity=0.253 Sum_probs=132.2
Q ss_pred CCCCceeeccccccchhhHHHHhhc----CCcccEEEeeccCCCcHHHHHHHhhccccccccccccccCChhHHHHHhh-
Q 013172 81 CKSLETLSLDSEFIHNKGVHAVAQG----CPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGK- 155 (448)
Q Consensus 81 ~~~L~~L~l~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~- 155 (448)
.+.|++|++++|.++..+...+... .++|++|++++|.+++..+..+...+++|++|+++++ .+.+.+...+..
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~ 149 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDL 149 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHH
Confidence 4789999999999987766554432 3689999999999999888888887899999999985 577776666543
Q ss_pred ---cCCCCCEEeecCCccCChhhHHHH---HhcCCCCcEEEecCCCCCChhhHHHHh---hcCCCcceEecccccccCch
Q 013172 156 ---GCKKLKNLTLSDCYFLSDMGLEAI---ATGCKELTHLEINGCHNIGTMGLESIG---KFCRNLTELALLYCQRIGNL 226 (448)
Q Consensus 156 ---~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~~~~~~ 226 (448)
..++|++|++++|. +++.+...+ ...+++|++|+++++ .+.+.+...+. ..+++|++|++++| .+++.
T Consensus 150 L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~ 226 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDT 226 (372)
T ss_dssp HHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHH
T ss_pred HHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHH
Confidence 35789999999996 666555444 356789999999985 46666544443 34579999999984 56665
Q ss_pred hHH---HHhccCcCCceEeccCCcCcChHHHHHHHH
Q 013172 227 ALL---EVGRGCKSLQALHLVDCSSIGDDAICSIAE 259 (448)
Q Consensus 227 ~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 259 (448)
+.. ..+...++|+.|+++++ .+++.+...+..
T Consensus 227 g~~~l~~~L~~~~~L~~L~Ls~N-~i~~~g~~~L~~ 261 (372)
T 3un9_A 227 AALALARAAREHPSLELLHLYFN-ELSSEGRQVLRD 261 (372)
T ss_dssp HHHHHHHHHHHCSSCCEEECTTS-SCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCEEeccCC-CCCHHHHHHHHH
Confidence 443 33456799999999995 588888777655
No 84
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.39 E-value=4.1e-14 Score=125.66 Aligned_cols=208 Identities=18% Similarity=0.081 Sum_probs=136.5
Q ss_pred CCCcceEecccccccCchhHHHH-hccCcCCceEeccCCcCcChH--HHHHHHH-hCCCCcEEEccccccccCchHhHhh
Q 013172 209 CRNLTELALLYCQRIGNLALLEV-GRGCKSLQALHLVDCSSIGDD--AICSIAE-GCQNLKKLHIRRCYKIGNNGIVAVG 284 (448)
Q Consensus 209 ~~~L~~L~l~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~--~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~ 284 (448)
+++|++|+++++ .+.......+ ...+++|++|+++++. +... .+..+.. .+++|++|+++++. ++..... ..
T Consensus 94 l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~-~~ 169 (312)
T 1wwl_A 94 ISGLQELTLENL-EVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCE-QV 169 (312)
T ss_dssp TSCCCEEEEEEE-BCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTT-TC
T ss_pred cCCccEEEccCC-cccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHH-Hh
Confidence 589999999985 3432221121 3678999999999853 4432 1222211 12899999999864 5443322 23
Q ss_pred hcCCCCcEEeccccCCcCch--HHHhh--ccCCCccEEeeeCccccCh--HHHHHHHhhCCCCCEEeccCcCCCCHHHHH
Q 013172 285 EHCNSLTELSLRFCDRVGDE--ALISI--GQGCSLQHLNVSGCHQIGD--AGIMAIAKGCPELNYLDVSVLQNLGDQAMV 358 (448)
Q Consensus 285 ~~~~~L~~L~l~~~~~~~~~--~~~~l--~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 358 (448)
..+++|++|+++++. +... ....+ ...++|++|+++++ .++. .....+...+++|+.|++++| .++.....
T Consensus 170 ~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~ 246 (312)
T 1wwl_A 170 RVFPALSTLDLSDNP-ELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHN-SLRDAAGA 246 (312)
T ss_dssp CCCSSCCEEECCSCT-TCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTS-CCCSSCCC
T ss_pred ccCCCCCEEECCCCC-cCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCC-cCCcccch
Confidence 468999999999965 3322 12333 56678999999985 5653 223345557899999999998 45443211
Q ss_pred HHhcCCCCCcEEeccCCCCCChHHHHHHHHcCccCceEeccCCCCCCHHHHHHHHhcCccceEEEEeeeeeccc
Q 013172 359 ELGKGCPLLKDVVLSHCRQITDVGLSHLVKNCRMLESCHMVYCPGITAAGVATVVSGCANIKKVMVEKWKVSER 432 (448)
Q Consensus 359 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 432 (448)
.....+++|++|+++++ .++.... .+ .++|+.|++++|. ++.. +. +..+++|+.|++++|++++.
T Consensus 247 ~~~~~l~~L~~L~Ls~N-~l~~ip~-~~---~~~L~~L~Ls~N~-l~~~--p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 247 PSCDWPSQLNSLNLSFT-GLKQVPK-GL---PAKLSVLDLSYNR-LDRN--PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp SCCCCCTTCCEEECTTS-CCSSCCS-SC---CSEEEEEECCSSC-CCSC--CC-TTTSCEEEEEECTTCTTTCC
T ss_pred hhhhhcCCCCEEECCCC-ccChhhh-hc---cCCceEEECCCCC-CCCC--hh-HhhCCCCCEEeccCCCCCCC
Confidence 12234689999999995 5663211 11 2689999999986 4332 22 56889999999999998764
No 85
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.37 E-value=4.9e-12 Score=111.87 Aligned_cols=188 Identities=19% Similarity=0.168 Sum_probs=115.6
Q ss_pred CCccEEEeccCCccChhhHHHHHhcCCCCceeeccccccchhhHHHHhhcCCcccEEEeeccCCCcHHHHHHHhhccccc
Q 013172 56 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLE 135 (448)
Q Consensus 56 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 135 (448)
++|++|+++++. +.... . ...+++|++|++++|.+..... +..+++|++|+++++.+.... .+ ..+++|+
T Consensus 41 ~~L~~L~l~~~~-i~~l~--~-~~~l~~L~~L~L~~n~i~~~~~---~~~l~~L~~L~L~~n~l~~~~--~~-~~l~~L~ 110 (308)
T 1h6u_A 41 DGITTLSAFGTG-VTTIE--G-VQYLNNLIGLELKDNQITDLAP---LKNLTKITELELSGNPLKNVS--AI-AGLQSIK 110 (308)
T ss_dssp HTCCEEECTTSC-CCCCT--T-GGGCTTCCEEECCSSCCCCCGG---GTTCCSCCEEECCSCCCSCCG--GG-TTCTTCC
T ss_pred CCcCEEEeeCCC-ccCch--h-hhccCCCCEEEccCCcCCCChh---HccCCCCCEEEccCCcCCCch--hh-cCCCCCC
Confidence 467777777764 33321 1 3456777777777776654332 445777777777777665532 22 3367777
Q ss_pred cccccccccCChhHHHHHhhcCCCCCEEeecCCccCChhhHHHHHhcCCCCcEEEecCCCCCChhhHHHHhhcCCCcceE
Q 013172 136 LLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTEL 215 (448)
Q Consensus 136 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L 215 (448)
+|+++++. +... +. ...+++|+.|+++++. +..... ...+++|+.|+++++. +..... ...+++|+.|
T Consensus 111 ~L~l~~n~-l~~~--~~-l~~l~~L~~L~l~~n~-l~~~~~---l~~l~~L~~L~l~~n~-l~~~~~---l~~l~~L~~L 178 (308)
T 1h6u_A 111 TLDLTSTQ-ITDV--TP-LAGLSNLQVLYLDLNQ-ITNISP---LAGLTNLQYLSIGNAQ-VSDLTP---LANLSKLTTL 178 (308)
T ss_dssp EEECTTSC-CCCC--GG-GTTCTTCCEEECCSSC-CCCCGG---GGGCTTCCEEECCSSC-CCCCGG---GTTCTTCCEE
T ss_pred EEECCCCC-CCCc--hh-hcCCCCCCEEECCCCc-cCcCcc---ccCCCCccEEEccCCc-CCCChh---hcCCCCCCEE
Confidence 77777643 3221 11 4467888888888875 332211 4467888888888753 333221 3345888888
Q ss_pred ecccccccCchhHHHHhccCcCCceEeccCCcCcChHHHHHHHHhCCCCcEEEccccc
Q 013172 216 ALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCY 273 (448)
Q Consensus 216 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 273 (448)
+++++ .+..... ...+++|++|+++++. +.+.. . ...+++|+.|++.++.
T Consensus 179 ~l~~n-~l~~~~~---l~~l~~L~~L~L~~N~-l~~~~--~-l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 179 KADDN-KISDISP---LASLPNLIEVHLKNNQ-ISDVS--P-LANTSNLFIVTLTNQT 228 (308)
T ss_dssp ECCSS-CCCCCGG---GGGCTTCCEEECTTSC-CCBCG--G-GTTCTTCCEEEEEEEE
T ss_pred ECCCC-ccCcChh---hcCCCCCCEEEccCCc-cCccc--c-ccCCCCCCEEEccCCe
Confidence 88874 3443322 4568888889888853 43322 1 3558889999998864
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.31 E-value=4.7e-13 Score=118.78 Aligned_cols=229 Identities=14% Similarity=0.089 Sum_probs=123.8
Q ss_pred CCCceeeccccccchhhHHHHhh--cCCcccEEEeeccCCCcHHHHHHH-hhccccccccccccccCChhH--HH-HHhh
Q 013172 82 KSLETLSLDSEFIHNKGVHAVAQ--GCPLLRVLKLQCINVTDEALVAVG-NQCLSLELLALYSFQQFTDKG--LH-AVGK 155 (448)
Q Consensus 82 ~~L~~L~l~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~--~~-~~~~ 155 (448)
..++.+.+.++.++...+..+.. .+++|++|+++++.+.......+. ..+++|++|+++++. +.... +. ....
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVS-WATGRSWLAELQQW 142 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCC-CSSTTSSHHHHHTT
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeeccc-ccchhhhhHHHHhh
Confidence 45677777777666555443322 235688888877776544333331 346788888887643 32210 11 1122
Q ss_pred cCCCCCEEeecCCccCChhhHHHHHhcCCCCcEEEecCCCCCChhhHHH--HhhcCCCcceEecccccccCch-h-HHHH
Q 013172 156 GCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLES--IGKFCRNLTELALLYCQRIGNL-A-LLEV 231 (448)
Q Consensus 156 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~--l~~~~~~L~~L~l~~~~~~~~~-~-~~~~ 231 (448)
.+++|++|+++++. +.... ......+++|++|+++++......++.. ....+++|++|+++++ .+... . ...+
T Consensus 143 ~~~~L~~L~Ls~n~-l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l 219 (310)
T 4glp_A 143 LKPGLKVLSIAQAH-SPAFS-CEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAAL 219 (310)
T ss_dssp BCSCCCEEEEECCS-SCCCC-TTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHH
T ss_pred hccCCCEEEeeCCC-cchhh-HHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHH
Confidence 57788888888775 22211 1122356788888888754222222211 1134577888888774 34321 1 1223
Q ss_pred hccCcCCceEeccCCcCcChHHHHHHHH--hCCCCcEEEccccccccCchHhHhhhcCCCCcEEeccccCCcCchHHHhh
Q 013172 232 GRGCKSLQALHLVDCSSIGDDAICSIAE--GCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISI 309 (448)
Q Consensus 232 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l 309 (448)
...+++|++|+++++. +.......+.. .+++|++|+++++. ++.. +.. -.++|++|+++++. ++.. ..+
T Consensus 220 ~~~l~~L~~L~Ls~N~-l~~~~p~~~~~~~~~~~L~~L~Ls~N~-l~~l--p~~--~~~~L~~L~Ls~N~-l~~~--~~~ 290 (310)
T 4glp_A 220 AAAGVQPHSLDLSHNS-LRATVNPSAPRCMWSSALNSLNLSFAG-LEQV--PKG--LPAKLRVLDLSSNR-LNRA--PQP 290 (310)
T ss_dssp HHHTCCCSSEECTTSC-CCCCCCSCCSSCCCCTTCCCEECCSSC-CCSC--CSC--CCSCCSCEECCSCC-CCSC--CCT
T ss_pred HhcCCCCCEEECCCCC-CCccchhhHHhccCcCcCCEEECCCCC-CCch--hhh--hcCCCCEEECCCCc-CCCC--chh
Confidence 4567788888888753 33221111111 12678888887753 4421 111 13678888887753 4432 123
Q ss_pred ccCCCccEEeeeCc
Q 013172 310 GQGCSLQHLNVSGC 323 (448)
Q Consensus 310 ~~~~~L~~L~l~~~ 323 (448)
..+++|+.|+++++
T Consensus 291 ~~l~~L~~L~L~~N 304 (310)
T 4glp_A 291 DELPEVDNLTLDGN 304 (310)
T ss_dssp TSCCCCSCEECSST
T ss_pred hhCCCccEEECcCC
Confidence 45567888888773
No 87
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.26 E-value=6.6e-12 Score=103.30 Aligned_cols=153 Identities=15% Similarity=0.198 Sum_probs=87.4
Q ss_pred CCCCcEEEccccccccCchHhHhhhcCCCCcEEeccccCCcCchHHHhhccCCCccEEeeeCccccChHHHHHHHhhCCC
Q 013172 261 CQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPE 340 (448)
Q Consensus 261 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 340 (448)
+++|+.|+++++ .+++.. ....+++|++|+++++ .+.+ +..+..+++|++|+++++ .++...... ...+++
T Consensus 43 l~~L~~L~l~~n-~i~~l~---~l~~l~~L~~L~l~~n-~~~~--~~~l~~l~~L~~L~l~~n-~l~~~~~~~-l~~l~~ 113 (197)
T 4ezg_A 43 MNSLTYITLANI-NVTDLT---GIEYAHNIKDLTINNI-HATN--YNPISGLSNLERLRIMGK-DVTSDKIPN-LSGLTS 113 (197)
T ss_dssp HHTCCEEEEESS-CCSCCT---TGGGCTTCSEEEEESC-CCSC--CGGGTTCTTCCEEEEECT-TCBGGGSCC-CTTCTT
T ss_pred cCCccEEeccCC-CccChH---HHhcCCCCCEEEccCC-CCCc--chhhhcCCCCCEEEeECC-ccCcccChh-hcCCCC
Confidence 445666666653 233211 1234666777777665 2322 234555556777777663 444322222 235677
Q ss_pred CCEEeccCcCCCCHHHHHHHhcCCCCCcEEeccCCCCCChHHHHHHHHcCccCceEeccCCCCCCHHHHHHHHhcCccce
Q 013172 341 LNYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSHCRQITDVGLSHLVKNCRMLESCHMVYCPGITAAGVATVVSGCANIK 420 (448)
Q Consensus 341 L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~ 420 (448)
|+.|++++| .+++.....+ ..+++|++|++++|..+++.. . ...+++|+.|++++|. ++... .+..+++|+
T Consensus 114 L~~L~Ls~n-~i~~~~~~~l-~~l~~L~~L~L~~n~~i~~~~--~-l~~l~~L~~L~l~~n~-i~~~~---~l~~l~~L~ 184 (197)
T 4ezg_A 114 LTLLDISHS-AHDDSILTKI-NTLPKVNSIDLSYNGAITDIM--P-LKTLPELKSLNIQFDG-VHDYR---GIEDFPKLN 184 (197)
T ss_dssp CCEEECCSS-BCBGGGHHHH-TTCSSCCEEECCSCTBCCCCG--G-GGGCSSCCEEECTTBC-CCCCT---TGGGCSSCC
T ss_pred CCEEEecCC-ccCcHhHHHH-hhCCCCCEEEccCCCCccccH--h-hcCCCCCCEEECCCCC-CcChH---HhccCCCCC
Confidence 888888777 5555444444 357788888887764355543 2 3467888888888775 33321 346788888
Q ss_pred EEEEeeeeecc
Q 013172 421 KVMVEKWKVSE 431 (448)
Q Consensus 421 ~L~l~~~~~~~ 431 (448)
.|++++|++.+
T Consensus 185 ~L~l~~N~i~~ 195 (197)
T 4ezg_A 185 QLYAFSQTIGG 195 (197)
T ss_dssp EEEECBC----
T ss_pred EEEeeCcccCC
Confidence 88888888764
No 88
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.23 E-value=7.6e-11 Score=103.26 Aligned_cols=130 Identities=18% Similarity=0.127 Sum_probs=63.9
Q ss_pred cCCCCcEEeccccCCcCchHHHhhccCCCccEEeeeCccccChHHHHHHHhhCCCCCEEeccCcCCCCHHHHHHHhcCCC
Q 013172 286 HCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCP 365 (448)
Q Consensus 286 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 365 (448)
.+++|++|+++++. +.+ +..+..+++|++|+++++ .++.. . ....+++|+.|++++| .++.. .....++
T Consensus 88 ~l~~L~~L~l~~n~-l~~--~~~l~~l~~L~~L~L~~n-~i~~~--~-~l~~l~~L~~L~l~~n-~l~~~---~~l~~l~ 156 (291)
T 1h6t_A 88 NLKNLGWLFLDENK-VKD--LSSLKDLKKLKSLSLEHN-GISDI--N-GLVHLPQLESLYLGNN-KITDI---TVLSRLT 156 (291)
T ss_dssp TCTTCCEEECCSSC-CCC--GGGGTTCTTCCEEECTTS-CCCCC--G-GGGGCTTCCEEECCSS-CCCCC---GGGGGCT
T ss_pred cCCCCCEEECCCCc-CCC--ChhhccCCCCCEEECCCC-cCCCC--h-hhcCCCCCCEEEccCC-cCCcc---hhhccCC
Confidence 34555555554432 222 222444444555555543 23221 1 1224566666666665 33322 1223466
Q ss_pred CCcEEeccCCCCCChHHHHHHHHcCccCceEeccCCCCCCHHHHHHHHhcCccceEEEEeeeeeccccc
Q 013172 366 LLKDVVLSHCRQITDVGLSHLVKNCRMLESCHMVYCPGITAAGVATVVSGCANIKKVMVEKWKVSERTK 434 (448)
Q Consensus 366 ~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 434 (448)
+|++|++++| .+++... ...+++|+.|++++|. ++.. +. +..+++|+.|++++|++.+...
T Consensus 157 ~L~~L~L~~N-~l~~~~~---l~~l~~L~~L~L~~N~-i~~l--~~-l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 157 KLDTLSLEDN-QISDIVP---LAGLTKLQNLYLSKNH-ISDL--RA-LAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp TCSEEECCSS-CCCCCGG---GTTCTTCCEEECCSSC-CCBC--GG-GTTCTTCSEEEEEEEEEECCCE
T ss_pred CCCEEEccCC-ccccchh---hcCCCccCEEECCCCc-CCCC--hh-hccCCCCCEEECcCCcccCCcc
Confidence 6666666663 3544322 2346666666666664 3221 11 4566777777777776655444
No 89
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.21 E-value=8.1e-13 Score=115.21 Aligned_cols=85 Identities=24% Similarity=0.284 Sum_probs=37.3
Q ss_pred CcceeeeccccccChhHHHHHHhhhCCCccEEEeccCCccChhhHHHHHhcCCCCceeeccccccchhhHHHHhhcCCcc
Q 013172 30 QLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLL 109 (448)
Q Consensus 30 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 109 (448)
++++|+++++ .+.......+ ..+ ++|++|++++|. ++...... ...+++|++|++++|.+.......+ ..+++|
T Consensus 29 ~l~~L~ls~n-~l~~~~~~~~-~~l-~~L~~L~l~~n~-l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L 102 (276)
T 2z62_A 29 STKNLDLSFN-PLRHLGSYSF-FSF-PELQVLDLSRCE-IQTIEDGA-YQSLSHLSTLILTGNPIQSLALGAF-SGLSSL 102 (276)
T ss_dssp TCCEEECTTC-CCCEECTTTT-TTC-TTCSEEECTTCC-CCEECTTT-TTTCTTCCEEECTTCCCCEECTTTT-TTCTTC
T ss_pred CccEEECCCC-cccccCHhHh-ccc-cCCcEEECCCCc-CCccCHHH-ccCCcCCCEEECCCCccCccChhhh-cCCccc
Confidence 4666666555 2332221111 112 456666665553 33222111 1345556666665555543322222 235555
Q ss_pred cEEEeeccCCC
Q 013172 110 RVLKLQCINVT 120 (448)
Q Consensus 110 ~~L~l~~~~~~ 120 (448)
++|+++++.+.
T Consensus 103 ~~L~l~~n~l~ 113 (276)
T 2z62_A 103 QKLVAVETNLA 113 (276)
T ss_dssp CEEECTTSCCC
T ss_pred cEEECCCCCcc
Confidence 55555554443
No 90
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.21 E-value=3e-11 Score=99.33 Aligned_cols=147 Identities=20% Similarity=0.204 Sum_probs=81.6
Q ss_pred CCccEEEeccCCccChhhHHHHHhcCCCCceeeccccccchhhHHHHhhcCCcccEEEeeccCCCcHHHHHHHhhccccc
Q 013172 56 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLE 135 (448)
Q Consensus 56 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 135 (448)
++|++|+++++. ++... . ...+++|++|++++|.+... .. +..+++|++|+++++.+....+..+.. +++|+
T Consensus 44 ~~L~~L~l~~n~-i~~l~--~-l~~l~~L~~L~l~~n~~~~~--~~-l~~l~~L~~L~l~~n~l~~~~~~~l~~-l~~L~ 115 (197)
T 4ezg_A 44 NSLTYITLANIN-VTDLT--G-IEYAHNIKDLTINNIHATNY--NP-ISGLSNLERLRIMGKDVTSDKIPNLSG-LTSLT 115 (197)
T ss_dssp HTCCEEEEESSC-CSCCT--T-GGGCTTCSEEEEESCCCSCC--GG-GTTCTTCCEEEEECTTCBGGGSCCCTT-CTTCC
T ss_pred CCccEEeccCCC-ccChH--H-HhcCCCCCEEEccCCCCCcc--hh-hhcCCCCCEEEeECCccCcccChhhcC-CCCCC
Confidence 467777777654 33222 1 34567777777776654432 22 234667777777766665433333333 66777
Q ss_pred cccccccccCChhHHHHHhhcCCCCCEEeecCCccCChhhHHHHHhcCCCCcEEEecCCCCCChhhHHHHhhcCCCcceE
Q 013172 136 LLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTEL 215 (448)
Q Consensus 136 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L 215 (448)
+|+++++ .+.+.....+ ..+++|+.|++++|..+.+.. ....+++|+.|+++++. +.... .+ ..+++|+.|
T Consensus 116 ~L~Ls~n-~i~~~~~~~l-~~l~~L~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n~-i~~~~--~l-~~l~~L~~L 186 (197)
T 4ezg_A 116 LLDISHS-AHDDSILTKI-NTLPKVNSIDLSYNGAITDIM---PLKTLPELKSLNIQFDG-VHDYR--GI-EDFPKLNQL 186 (197)
T ss_dssp EEECCSS-BCBGGGHHHH-TTCSSCCEEECCSCTBCCCCG---GGGGCSSCCEEECTTBC-CCCCT--TG-GGCSSCCEE
T ss_pred EEEecCC-ccCcHhHHHH-hhCCCCCEEEccCCCCccccH---hhcCCCCCCEEECCCCC-CcChH--Hh-ccCCCCCEE
Confidence 7777663 2433333332 356777777777765333322 23456777777777643 33321 22 234777777
Q ss_pred eccc
Q 013172 216 ALLY 219 (448)
Q Consensus 216 ~l~~ 219 (448)
++.+
T Consensus 187 ~l~~ 190 (197)
T 4ezg_A 187 YAFS 190 (197)
T ss_dssp EECB
T ss_pred EeeC
Confidence 7766
No 91
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.21 E-value=1.2e-12 Score=114.25 Aligned_cols=131 Identities=20% Similarity=0.126 Sum_probs=71.5
Q ss_pred CCccEEEeccCCccChhhHHHHHhcCCCCceeeccccccchhhHHHHhhcCCcccEEEeeccCCCcHHHHHHHhhccccc
Q 013172 56 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLE 135 (448)
Q Consensus 56 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 135 (448)
+++++|+++++. ++...... ...+++|++|++++|.+.......+ ..+++|++|+++++.+.......+. .+++|+
T Consensus 28 ~~l~~L~ls~n~-l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~ 103 (276)
T 2z62_A 28 FSTKNLDLSFNP-LRHLGSYS-FFSFPELQVLDLSRCEIQTIEDGAY-QSLSHLSTLILTGNPIQSLALGAFS-GLSSLQ 103 (276)
T ss_dssp TTCCEEECTTCC-CCEECTTT-TTTCTTCSEEECTTCCCCEECTTTT-TTCTTCCEEECTTCCCCEECTTTTT-TCTTCC
T ss_pred CCccEEECCCCc-ccccCHhH-hccccCCcEEECCCCcCCccCHHHc-cCCcCCCEEECCCCccCccChhhhc-CCcccc
Confidence 579999999875 55443322 2467899999999888765433333 4578889999888877654333232 256666
Q ss_pred cccccccccCChhHHHHHhhcCCCCCEEeecCCccCChhhHHHHHhcCCCCcEEEecC
Q 013172 136 LLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEING 193 (448)
Q Consensus 136 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 193 (448)
+|+++++. +.... ......+++|++|+++++. +....+......+++|+.|++++
T Consensus 104 ~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~ 158 (276)
T 2z62_A 104 KLVAVETN-LASLE-NFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSS 158 (276)
T ss_dssp EEECTTSC-CCCST-TCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCS
T ss_pred EEECCCCC-ccccC-chhcccCCCCCEEECcCCc-cceecCchhhccCCCCCEEECCC
Confidence 66665532 11100 0012234555555555553 22111111222345555555554
No 92
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.14 E-value=1.3e-11 Score=107.09 Aligned_cols=127 Identities=17% Similarity=0.146 Sum_probs=59.6
Q ss_pred CCCCcEEEecCCCCCChhhHHHHhhcCCCcceEecccccccCchhHHHHhccCcCCceEeccCCcCcChHHHHHHHHhCC
Q 013172 183 CKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQ 262 (448)
Q Consensus 183 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 262 (448)
+++|+.|.+.++. +... ..+. .+++|+.|+++++. +.... ....+++|+.|+++++. +.... ...+..++
T Consensus 40 l~~L~~L~l~~~~-i~~~--~~l~-~l~~L~~L~l~~n~-l~~~~---~l~~l~~L~~L~L~~n~-l~~~~-~~~~~~l~ 109 (272)
T 3rfs_A 40 LNSIDQIIANNSD-IKSV--QGIQ-YLPNVRYLALGGNK-LHDIS---ALKELTNLTYLILTGNQ-LQSLP-NGVFDKLT 109 (272)
T ss_dssp HTTCCEEECTTSC-CCCC--TTGG-GCTTCCEEECTTSC-CCCCG---GGTTCTTCCEEECTTSC-CCCCC-TTTTTTCT
T ss_pred ccceeeeeeCCCC-cccc--cccc-cCCCCcEEECCCCC-CCCch---hhcCCCCCCEEECCCCc-cCccC-hhHhcCCc
Confidence 5677777777643 2221 1222 24777777777632 33221 23456666666666642 22111 11123355
Q ss_pred CCcEEEccccccccCchHhHhhhcCCCCcEEeccccCCcCchHHHhhccCCCccEEeeeC
Q 013172 263 NLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSG 322 (448)
Q Consensus 263 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 322 (448)
+|++|+++++. ++.... .....+++|++|+++++ .+.......+...++|+.|++++
T Consensus 110 ~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~ 166 (272)
T 3rfs_A 110 NLKELVLVENQ-LQSLPD-GVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSY 166 (272)
T ss_dssp TCCEEECTTSC-CCCCCT-TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEECCCCc-CCccCH-HHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCC
Confidence 66666666542 322111 11234556666666554 23332222333444455555555
No 93
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.14 E-value=4.6e-12 Score=109.92 Aligned_cols=201 Identities=15% Similarity=0.097 Sum_probs=122.3
Q ss_pred CCcceeeeccccccChhHHHHHHhhhCCCccEEEeccCCccChhhHHHHHhcCCCCceeeccccccchhhHHHHhhcCCc
Q 013172 29 NQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPL 108 (448)
Q Consensus 29 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 108 (448)
.+++.+++++. .++.. ...+.+++++|+++++. ++...... ...+++|++|++++|.++.... ..+..+++
T Consensus 16 ~~~~~l~~~~~-~l~~i-----p~~~~~~l~~L~l~~n~-l~~~~~~~-~~~l~~L~~L~l~~n~l~~i~~-~~~~~l~~ 86 (270)
T 2o6q_A 16 NNKNSVDCSSK-KLTAI-----PSNIPADTKKLDLQSNK-LSSLPSKA-FHRLTKLRLLYLNDNKLQTLPA-GIFKELKN 86 (270)
T ss_dssp TTTTEEECTTS-CCSSC-----CSCCCTTCSEEECCSSC-CSCCCTTS-SSSCTTCCEEECCSSCCSCCCT-TTTSSCTT
T ss_pred CCCCEEEccCC-CCCcc-----CCCCCCCCCEEECcCCC-CCeeCHHH-hcCCCCCCEEECCCCccCeeCh-hhhcCCCC
Confidence 35677888766 33321 12233578888888874 44333222 2467888888888887764322 23345788
Q ss_pred ccEEEeeccCCCcHHHHHHHhhccccccccccccccCChhHHHHHhhcCCCCCEEeecCCccCChhhHHHHHhcCCCCcE
Q 013172 109 LRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTH 188 (448)
Q Consensus 109 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 188 (448)
|++|+++++.+.......+ ..+++|++|+++++. +... ....+..+++|++|+++++. +..... .....+++|+.
T Consensus 87 L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~ 161 (270)
T 2o6q_A 87 LETLWVTDNKLQALPIGVF-DQLVNLAELRLDRNQ-LKSL-PPRVFDSLTKLTYLSLGYNE-LQSLPK-GVFDKLTSLKE 161 (270)
T ss_dssp CCEEECCSSCCCCCCTTTT-TTCSSCCEEECCSSC-CCCC-CTTTTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCE
T ss_pred CCEEECCCCcCCcCCHhHc-ccccCCCEEECCCCc-cCee-CHHHhCcCcCCCEEECCCCc-CCccCH-hHccCCcccce
Confidence 8888888887765333222 337888888887643 2221 11223467899999999885 332221 12345789999
Q ss_pred EEecCCCCCChhhHHHHhhcCCCcceEecccccccCchhHHHHhccCcCCceEeccCCc
Q 013172 189 LEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCS 247 (448)
Q Consensus 189 L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 247 (448)
|++.++. +.......+ ..+++|+.|+++++ .+..... ..+..+++|+.|++++++
T Consensus 162 L~L~~n~-l~~~~~~~~-~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 162 LRLYNNQ-LKRVPEGAF-DKLTELKTLKLDNN-QLKRVPE-GAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp EECCSSC-CSCCCTTTT-TTCTTCCEEECCSS-CCSCCCT-TTTTTCTTCCEEECCSSC
T ss_pred eEecCCc-CcEeChhHh-ccCCCcCEEECCCC-cCCcCCH-HHhccccCCCEEEecCCC
Confidence 9998743 333222222 23589999999884 4443222 233567899999998854
No 94
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.12 E-value=3.3e-12 Score=108.74 Aligned_cols=201 Identities=11% Similarity=0.051 Sum_probs=125.8
Q ss_pred CCcceeeeccccccChhHHHHHHhhhCCCccEEEeccCCccChhhHHHHHhcCCCCceeeccc-cccchhhHHHHhhcCC
Q 013172 29 NQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDS-EFIHNKGVHAVAQGCP 107 (448)
Q Consensus 29 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~ 107 (448)
+++++|+++++ .++......+ ..+ ++|++|+++++..++...... ...+++|++|++++ |.++...... +..++
T Consensus 31 ~~l~~L~l~~n-~l~~i~~~~~-~~l-~~L~~L~l~~n~~l~~i~~~~-f~~l~~L~~L~l~~~n~l~~i~~~~-f~~l~ 105 (239)
T 2xwt_C 31 PSTQTLKLIET-HLRTIPSHAF-SNL-PNISRIYVSIDVTLQQLESHS-FYNLSKVTHIEIRNTRNLTYIDPDA-LKELP 105 (239)
T ss_dssp TTCCEEEEESC-CCSEECTTTT-TTC-TTCCEEEEECCSSCCEECTTT-EESCTTCCEEEEEEETTCCEECTTS-EECCT
T ss_pred CcccEEEEeCC-cceEECHHHc-cCC-CCCcEEeCCCCCCcceeCHhH-cCCCcCCcEEECCCCCCeeEcCHHH-hCCCC
Confidence 57999999988 4443322122 223 789999999875344333222 25689999999987 7776543333 34588
Q ss_pred cccEEEeeccCCCcHHHHHHHhhccccc---cccccccccCChhHHHHHhhcCCCCC-EEeecCCccCChhhHHHHHhcC
Q 013172 108 LLRVLKLQCINVTDEALVAVGNQCLSLE---LLALYSFQQFTDKGLHAVGKGCKKLK-NLTLSDCYFLSDMGLEAIATGC 183 (448)
Q Consensus 108 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~---~L~l~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~ 183 (448)
+|++|+++++.+.... . ...+++|+ .|+++++..+..-. ...+..+++|+ .|+++++. +...+.. ... .
T Consensus 106 ~L~~L~l~~n~l~~lp--~-~~~l~~L~~L~~L~l~~N~~l~~i~-~~~~~~l~~L~~~L~l~~n~-l~~i~~~-~~~-~ 178 (239)
T 2xwt_C 106 LLKFLGIFNTGLKMFP--D-LTKVYSTDIFFILEITDNPYMTSIP-VNAFQGLCNETLTLKLYNNG-FTSVQGY-AFN-G 178 (239)
T ss_dssp TCCEEEEEEECCCSCC--C-CTTCCBCCSEEEEEEESCTTCCEEC-TTTTTTTBSSEEEEECCSCC-CCEECTT-TTT-T
T ss_pred CCCEEeCCCCCCcccc--c-cccccccccccEEECCCCcchhhcC-cccccchhcceeEEEcCCCC-CcccCHh-hcC-C
Confidence 9999999888776522 2 23467777 88888752343211 12234678999 99998876 3322211 122 2
Q ss_pred CCCcEEEecCCCCCChhhHHHHhhcC-CCcceEecccccccCchhHHHHhccCcCCceEeccCCc
Q 013172 184 KELTHLEINGCHNIGTMGLESIGKFC-RNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCS 247 (448)
Q Consensus 184 ~~L~~L~l~~~~~~~~~~~~~l~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 247 (448)
++|+.|++.++..+....... ...+ ++|+.|++++ +.+...+. ..+++|+.|++.++.
T Consensus 179 ~~L~~L~L~~n~~l~~i~~~~-~~~l~~~L~~L~l~~-N~l~~l~~----~~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 179 TKLDAVYLNKNKYLTVIDKDA-FGGVYSGPSLLDVSQ-TSVTALPS----KGLEHLKELIARNTW 237 (239)
T ss_dssp CEEEEEECTTCTTCCEECTTT-TTTCSBCCSEEECTT-CCCCCCCC----TTCTTCSEEECTTC-
T ss_pred CCCCEEEcCCCCCcccCCHHH-hhccccCCcEEECCC-CccccCCh----hHhccCceeeccCcc
Confidence 789999999864354432222 2335 8999999988 44443221 147899999998753
No 95
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.11 E-value=3.6e-10 Score=101.25 Aligned_cols=162 Identities=15% Similarity=0.101 Sum_probs=87.6
Q ss_pred HHHHhCCCCcEEEccccccccCchHhHhhhcCCCCcEEeccccCCcCchHHHhhc--cCCCccEEeeeCccc--cCh---
Q 013172 256 SIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIG--QGCSLQHLNVSGCHQ--IGD--- 328 (448)
Q Consensus 256 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~--~~~--- 328 (448)
.+...+|+|+.|.+.++..+.. ..+ ..++|++|++..+ .+++..+..+. .+++|++|+|+.+.+ ..+
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l~l---~~~--~~~~L~~L~L~~~-~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~ 239 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNLSI---GKK--PRPNLKSLEIISG-GLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDM 239 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTCBC---CSC--BCTTCSEEEEECS-BCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCG
T ss_pred HHHhcCCCCcEEEEeCCCCcee---ccc--cCCCCcEEEEecC-CCChHHHHHHHHccCCCCcEEEEeccccccccchhH
Confidence 3444456666666655421111 111 2566666666653 35555555554 445666666642111 011
Q ss_pred HHHHHHH--hhCCCCCEEeccCcCCCCHHHHHHHhc--CCCCCcEEeccCCCCCChHHHHHHHH---cCccCceEeccCC
Q 013172 329 AGIMAIA--KGCPELNYLDVSVLQNLGDQAMVELGK--GCPLLKDVVLSHCRQITDVGLSHLVK---NCRMLESCHMVYC 401 (448)
Q Consensus 329 ~~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~--~~~~L~~L~l~~c~~l~~~~~~~~~~---~~~~L~~L~l~~c 401 (448)
..+..+. ..+|+|+.|++.+| .+++.+...++. .+|+|++|+++. +.+++.+...+.. .+++|+.|++++|
T Consensus 240 ~~l~~~l~~~~~p~Lr~L~L~~~-~i~~~~~~~la~a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 240 NVFRPLFSKDRFPNLKWLGIVDA-EEQNVVVEMFLESDILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp GGTGGGSCTTTCTTCCEEEEESC-TTHHHHHHHHHHCSSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred HHHHHHHhcCCCCCcCEEeCCCC-CCchHHHHHHHhCccCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 0111111 14677888888776 455554444442 467788888866 4577776655543 3677888888776
Q ss_pred CCCCHHHHHHHHhcCccceEEEEeeee
Q 013172 402 PGITAAGVATVVSGCANIKKVMVEKWK 428 (448)
Q Consensus 402 ~~~~~~~~~~~~~~~~~L~~L~l~~~~ 428 (448)
. +++.++..+...+ ...++++.++
T Consensus 318 ~-i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 318 Y-LSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp B-CCHHHHHHHHHHC--CSEEECCSBC
T ss_pred c-CCHHHHHHHHHHc--CCEEEecCCc
Confidence 4 7776666554323 2445555554
No 96
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.11 E-value=8.9e-12 Score=108.13 Aligned_cols=197 Identities=16% Similarity=0.087 Sum_probs=127.7
Q ss_pred EEEeeeeccccccccccchhccccCCcceeeeccccccChhHHHHHHhhhCCCccEEEeccCCccChhhHHHHHhcCCCC
Q 013172 5 VLNFGFCKGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSL 84 (448)
Q Consensus 5 ~L~~s~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 84 (448)
.++.+.+.+..++.. + .+++++|+++++ .+.......+ ..+ ++|++|+++++. ++... ..+...+++|
T Consensus 20 ~l~~~~~~l~~ip~~----~---~~~l~~L~l~~n-~l~~~~~~~~-~~l-~~L~~L~l~~n~-l~~i~-~~~~~~l~~L 87 (270)
T 2o6q_A 20 SVDCSSKKLTAIPSN----I---PADTKKLDLQSN-KLSSLPSKAF-HRL-TKLRLLYLNDNK-LQTLP-AGIFKELKNL 87 (270)
T ss_dssp EEECTTSCCSSCCSC----C---CTTCSEEECCSS-CCSCCCTTSS-SSC-TTCCEEECCSSC-CSCCC-TTTTSSCTTC
T ss_pred EEEccCCCCCccCCC----C---CCCCCEEECcCC-CCCeeCHHHh-cCC-CCCCEEECCCCc-cCeeC-hhhhcCCCCC
Confidence 466666555554421 1 267999999988 4443322112 223 789999999975 44332 2223568999
Q ss_pred ceeeccccccchhhHHHHhhcCCcccEEEeeccCCCcHHHHHHHhhccccccccccccccCChhHHHHHhhcCCCCCEEe
Q 013172 85 ETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLT 164 (448)
Q Consensus 85 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 164 (448)
++|++++|.+...... .+..+++|++|+++++.+.......+ ..+++|++|+++++. +... ....+..+++|+.|+
T Consensus 88 ~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~-l~~~-~~~~~~~l~~L~~L~ 163 (270)
T 2o6q_A 88 ETLWVTDNKLQALPIG-VFDQLVNLAELRLDRNQLKSLPPRVF-DSLTKLTYLSLGYNE-LQSL-PKGVFDKLTSLKELR 163 (270)
T ss_dssp CEEECCSSCCCCCCTT-TTTTCSSCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSC-CCCC-CTTTTTTCTTCCEEE
T ss_pred CEEECCCCcCCcCCHh-HcccccCCCEEECCCCccCeeCHHHh-CcCcCCCEEECCCCc-CCcc-CHhHccCCcccceeE
Confidence 9999999988754432 33468999999999888875443333 348999999998753 3221 112234679999999
Q ss_pred ecCCccCChhhHHHHHhcCCCCcEEEecCCCCCChhhHHHHhhcCCCcceEeccccc
Q 013172 165 LSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQ 221 (448)
Q Consensus 165 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 221 (448)
++++. +..... .....+++|+.|+++++ .+....... ...+++|+.|++.+++
T Consensus 164 L~~n~-l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 164 LYNNQ-LKRVPE-GAFDKLTELKTLKLDNN-QLKRVPEGA-FDSLEKLKMLQLQENP 216 (270)
T ss_dssp CCSSC-CSCCCT-TTTTTCTTCCEEECCSS-CCSCCCTTT-TTTCTTCCEEECCSSC
T ss_pred ecCCc-CcEeCh-hHhccCCCcCEEECCCC-cCCcCCHHH-hccccCCCEEEecCCC
Confidence 99986 332221 12345799999999985 344332222 2345899999999854
No 97
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.10 E-value=4.7e-12 Score=107.76 Aligned_cols=34 Identities=9% Similarity=0.090 Sum_probs=15.5
Q ss_pred CCCEEeecCCccCChhhHHHHHhcCCCCcEEEecCC
Q 013172 159 KLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGC 194 (448)
Q Consensus 159 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 194 (448)
+++.|+++++. ++..... ....+++|+.|++.++
T Consensus 32 ~l~~L~l~~n~-l~~i~~~-~~~~l~~L~~L~l~~n 65 (239)
T 2xwt_C 32 STQTLKLIETH-LRTIPSH-AFSNLPNISRIYVSID 65 (239)
T ss_dssp TCCEEEEESCC-CSEECTT-TTTTCTTCCEEEEECC
T ss_pred cccEEEEeCCc-ceEECHH-HccCCCCCcEEeCCCC
Confidence 56666666554 2221111 1223555566655553
No 98
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.10 E-value=2.1e-10 Score=110.39 Aligned_cols=121 Identities=16% Similarity=0.119 Sum_probs=56.4
Q ss_pred CCcceEecccccccCchhHHHHhccCcCCceEeccCCcCcChHHHHHHHHhCCCCcEEEccccccccCchHhHhhhcCCC
Q 013172 210 RNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNS 289 (448)
Q Consensus 210 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 289 (448)
++|+.|++.++. +.... .+..+++|+.|+++++. +..... ...+++|+.|+++++. +... . ....+++
T Consensus 43 ~~L~~L~l~~n~-i~~l~---~l~~l~~L~~L~Ls~N~-l~~~~~---l~~l~~L~~L~Ls~N~-l~~l--~-~l~~l~~ 110 (605)
T 1m9s_A 43 NSIDQIIANNSD-IKSVQ---GIQYLPNVTKLFLNGNK-LTDIKP---LTNLKNLGWLFLDENK-IKDL--S-SLKDLKK 110 (605)
T ss_dssp TTCCCCBCTTCC-CCCCT---TGGGCTTCCEEECTTSC-CCCCGG---GGGCTTCCEEECCSSC-CCCC--T-TSTTCTT
T ss_pred CCCCEEECcCCC-CCCCh---HHccCCCCCEEEeeCCC-CCCChh---hccCCCCCEEECcCCC-CCCC--h-hhccCCC
Confidence 667777776632 32221 13456666666666643 222111 3346666666666542 3221 1 1234556
Q ss_pred CcEEeccccCCcCchHHHhhccCCCccEEeeeCccccChHHHHHHHhhCCCCCEEeccCc
Q 013172 290 LTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVL 349 (448)
Q Consensus 290 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 349 (448)
|+.|+++++. +.+ +..+..+++|+.|+++++ .++.. ..+..+++|+.|++++|
T Consensus 111 L~~L~Ls~N~-l~~--l~~l~~l~~L~~L~Ls~N-~l~~l---~~l~~l~~L~~L~Ls~N 163 (605)
T 1m9s_A 111 LKSLSLEHNG-ISD--INGLVHLPQLESLYLGNN-KITDI---TVLSRLTKLDTLSLEDN 163 (605)
T ss_dssp CCEEECTTSC-CCC--CGGGGGCTTCSEEECCSS-CCCCC---GGGGSCTTCSEEECCSS
T ss_pred CCEEEecCCC-CCC--CccccCCCccCEEECCCC-ccCCc---hhhcccCCCCEEECcCC
Confidence 6666665542 322 223444445555555553 23221 12234455555555554
No 99
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.09 E-value=6.8e-10 Score=97.17 Aligned_cols=59 Identities=17% Similarity=0.068 Sum_probs=31.3
Q ss_pred CCccEEEeccCCccChhhHHHHHhcCCCCceeeccccccchhhHHHHhhcCCcccEEEeeccCCCc
Q 013172 56 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTD 121 (448)
Q Consensus 56 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 121 (448)
++|++|++++|. +.... . ...+++|++|++++|.+..... +..+++|++|+++++.+..
T Consensus 46 ~~L~~L~l~~~~-i~~~~--~-~~~l~~L~~L~L~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~ 104 (291)
T 1h6t_A 46 NSIDQIIANNSD-IKSVQ--G-IQYLPNVTKLFLNGNKLTDIKP---LANLKNLGWLFLDENKVKD 104 (291)
T ss_dssp HTCCEEECTTSC-CCCCT--T-GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCC
T ss_pred CcccEEEccCCC-cccCh--h-HhcCCCCCEEEccCCccCCCcc---cccCCCCCEEECCCCcCCC
Confidence 456666666653 32221 1 2445666666666666544322 3345666666666655543
No 100
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.06 E-value=2.7e-11 Score=106.02 Aligned_cols=198 Identities=18% Similarity=0.137 Sum_probs=110.9
Q ss_pred cCCcceeeeccccccChhHHHHHHhhhCCCccEEEeccCCccChhhHHHHHhcCCCCceeeccccccchhhHHHHhhcCC
Q 013172 28 CNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCP 107 (448)
Q Consensus 28 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 107 (448)
+++++++++++. .++.. ...+.++++.|+++++. ++...... ...+++|++|++++|.++..... ..++
T Consensus 9 l~~l~~l~~~~~-~l~~i-----p~~~~~~l~~L~L~~N~-l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~---~~l~ 77 (290)
T 1p9a_G 9 VASHLEVNCDKR-NLTAL-----PPDLPKDTTILHLSENL-LYTFSLAT-LMPYTRLTQLNLDRAELTKLQVD---GTLP 77 (290)
T ss_dssp STTCCEEECTTS-CCSSC-----CSCCCTTCCEEECTTSC-CSEEEGGG-GTTCTTCCEEECTTSCCCEEECC---SCCT
T ss_pred cCCccEEECCCC-CCCcC-----CCCCCCCCCEEEcCCCc-CCccCHHH-hhcCCCCCEEECCCCccCcccCC---CCCC
Confidence 366777777765 33321 11222567777777764 44333222 24567777777777776543221 3567
Q ss_pred cccEEEeeccCCCcHHHHHHHhhccccccccccccccCChhHHHHHhhcCCCCCEEeecCCccCChhhHHHHHhcCCCCc
Q 013172 108 LLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELT 187 (448)
Q Consensus 108 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 187 (448)
+|++|+++++.+.... .....+++|+.|+++++. +... .+..+..+++|+.|+++++. +.... ......+++|+
T Consensus 78 ~L~~L~Ls~N~l~~l~--~~~~~l~~L~~L~l~~N~-l~~l-~~~~~~~l~~L~~L~L~~N~-l~~~~-~~~~~~l~~L~ 151 (290)
T 1p9a_G 78 VLGTLDLSHNQLQSLP--LLGQTLPALTVLDVSFNR-LTSL-PLGALRGLGELQELYLKGNE-LKTLP-PGLLTPTPKLE 151 (290)
T ss_dssp TCCEEECCSSCCSSCC--CCTTTCTTCCEEECCSSC-CCCC-CSSTTTTCTTCCEEECTTSC-CCCCC-TTTTTTCTTCC
T ss_pred cCCEEECCCCcCCcCc--hhhccCCCCCEEECCCCc-Cccc-CHHHHcCCCCCCEEECCCCC-CCccC-hhhcccccCCC
Confidence 7778887777665321 122346777777777632 3211 11223456788888888875 33221 11223567888
Q ss_pred EEEecCCCCCChhhHHHHhhcCCCcceEecccccccCchhHHHHhccCcCCceEeccCCc
Q 013172 188 HLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCS 247 (448)
Q Consensus 188 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 247 (448)
.|+++++ .+..... .....+++|+.|+++++ .+...+ ......++|+.+++++++
T Consensus 152 ~L~L~~N-~l~~l~~-~~~~~l~~L~~L~L~~N-~l~~ip--~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 152 KLSLANN-NLTELPA-GLLNGLENLDTLLLQEN-SLYTIP--KGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp EEECTTS-CCSCCCT-TTTTTCTTCCEEECCSS-CCCCCC--TTTTTTCCCSEEECCSCC
T ss_pred EEECCCC-cCCccCH-HHhcCcCCCCEEECCCC-cCCccC--hhhcccccCCeEEeCCCC
Confidence 8888874 3433222 22233578888888873 343221 122345688888888754
No 101
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.06 E-value=5.1e-11 Score=103.41 Aligned_cols=196 Identities=17% Similarity=0.061 Sum_probs=132.7
Q ss_pred CCcceEecccccccCchhHHHHhccCcCCceEeccCCcCcChHHHHHHHHhCCCCcEEEccccccccCchHhHhhhcCCC
Q 013172 210 RNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNS 289 (448)
Q Consensus 210 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 289 (448)
++|+.|++.++. +.... .+..+++|+.|+++++. +... . ....+++|++|+++++. ++.... .....+++
T Consensus 41 ~~L~~L~l~~~~-i~~~~---~l~~l~~L~~L~l~~n~-l~~~--~-~l~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~ 110 (272)
T 3rfs_A 41 NSIDQIIANNSD-IKSVQ---GIQYLPNVRYLALGGNK-LHDI--S-ALKELTNLTYLILTGNQ-LQSLPN-GVFDKLTN 110 (272)
T ss_dssp TTCCEEECTTSC-CCCCT---TGGGCTTCCEEECTTSC-CCCC--G-GGTTCTTCCEEECTTSC-CCCCCT-TTTTTCTT
T ss_pred cceeeeeeCCCC-ccccc---ccccCCCCcEEECCCCC-CCCc--h-hhcCCCCCCEEECCCCc-cCccCh-hHhcCCcC
Confidence 899999998853 33322 24568999999999864 4332 2 23458999999999863 443222 22346899
Q ss_pred CcEEeccccCCcCchHHHhhccCCCccEEeeeCccccChHHHHHHHhhCCCCCEEeccCcCCCCHHHHHHHhcCCCCCcE
Q 013172 290 LTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCPLLKD 369 (448)
Q Consensus 290 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~ 369 (448)
|++|+++++ .+.......+..+++|++|+++++ .++... ......+++|+.|++++| .++.... .....+++|++
T Consensus 111 L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~ 185 (272)
T 3rfs_A 111 LKELVLVEN-QLQSLPDGVFDKLTNLTYLNLAHN-QLQSLP-KGVFDKLTNLTELDLSYN-QLQSLPE-GVFDKLTQLKD 185 (272)
T ss_dssp CCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCE
T ss_pred CCEEECCCC-cCCccCHHHhccCCCCCEEECCCC-ccCccC-HHHhccCccCCEEECCCC-CcCccCH-HHhcCCccCCE
Confidence 999999985 465544445667778999999986 454321 122346899999999998 4543322 22346899999
Q ss_pred EeccCCCCCChHHHHHHHHcCccCceEeccCCCCCCHHHHHHHHhcCccceEEEEeeeeecc
Q 013172 370 VVLSHCRQITDVGLSHLVKNCRMLESCHMVYCPGITAAGVATVVSGCANIKKVMVEKWKVSE 431 (448)
Q Consensus 370 L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 431 (448)
|++++| .++..... ....+++|+.|++++|+.. ..+|+|+.+.+..|+++.
T Consensus 186 L~L~~N-~l~~~~~~-~~~~l~~L~~L~l~~N~~~---------~~~~~l~~l~~~~n~~~g 236 (272)
T 3rfs_A 186 LRLYQN-QLKSVPDG-VFDRLTSLQYIWLHDNPWD---------CTCPGIRYLSEWINKHSG 236 (272)
T ss_dssp EECCSS-CCSCCCTT-TTTTCTTCCEEECCSSCBC---------CCTTTTHHHHHHHHHTGG
T ss_pred EECCCC-cCCccCHH-HHhCCcCCCEEEccCCCcc---------ccCcHHHHHHHHHHhCCC
Confidence 999985 46654332 2346899999999998743 346777777777665543
No 102
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.05 E-value=8.7e-10 Score=98.78 Aligned_cols=168 Identities=15% Similarity=0.101 Sum_probs=113.7
Q ss_pred hCCCCcEEEcccccc-------ccCchHhHhhhcCCCCcEEeccccCCcCchHHHhhccCCCccEEeeeCccccChHHHH
Q 013172 260 GCQNLKKLHIRRCYK-------IGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIM 332 (448)
Q Consensus 260 ~~~~L~~L~l~~~~~-------~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 332 (448)
.+++|+.|.+..... +....+..+...+|+|++|.++++..+. +..+ ..++|++|++..| .++..++.
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~---l~~~-~~~~L~~L~L~~~-~l~~~~l~ 211 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS---IGKK-PRPNLKSLEIISG-GLPDSVVE 211 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB---CCSC-BCTTCSEEEEECS-BCCHHHHH
T ss_pred hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce---eccc-cCCCCcEEEEecC-CCChHHHH
Confidence 355666666643210 1112345566778999999998863222 1222 2578999999975 57887777
Q ss_pred HHHh-hCCCCCEEeccCcCC--CCHH---HHHHHh--cCCCCCcEEeccCCCCCChHHHHHHHH--cCccCceEeccCCC
Q 013172 333 AIAK-GCPELNYLDVSVLQN--LGDQ---AMVELG--KGCPLLKDVVLSHCRQITDVGLSHLVK--NCRMLESCHMVYCP 402 (448)
Q Consensus 333 ~~~~-~~~~L~~L~l~~~~~--l~~~---~~~~~~--~~~~~L~~L~l~~c~~l~~~~~~~~~~--~~~~L~~L~l~~c~ 402 (448)
.+.. .+|+|+.|+|+.+.+ ..+. .+..+. ..+|+|++|++.+|. +.+.+...++. .+|+|++|+++.|.
T Consensus 212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~-i~~~~~~~la~a~~~~~L~~LdLs~n~ 290 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE-EQNVVVEMFLESDILPQLETMDISAGV 290 (362)
T ss_dssp HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT-THHHHHHHHHHCSSGGGCSEEECCSSC
T ss_pred HHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC-CchHHHHHHHhCccCCCCCEEECCCCC
Confidence 7764 689999999863211 1111 111221 258999999999864 77766666654 47899999998764
Q ss_pred CCCHHHHHHHH---hcCccceEEEEeeeeeccccc
Q 013172 403 GITAAGVATVV---SGCANIKKVMVEKWKVSERTK 434 (448)
Q Consensus 403 ~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~ 434 (448)
+++.+...+. ..+++|+.|++++|.+++...
T Consensus 291 -L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~ 324 (362)
T 2ra8_A 291 -LTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMK 324 (362)
T ss_dssp -CBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHH
T ss_pred -CChHHHHHHHhhcccCCcceEEECCCCcCCHHHH
Confidence 8887766654 457999999999999987765
No 103
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.04 E-value=1.8e-10 Score=89.96 Aligned_cols=108 Identities=22% Similarity=0.193 Sum_probs=48.2
Q ss_pred CCccEEEeccCCccChhhHHHHHhcCCCCceeeccccccchhhHHHHhhcCCcccEEEeeccCCCcHHHHHHHhhccccc
Q 013172 56 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLE 135 (448)
Q Consensus 56 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 135 (448)
+++++|++++|. +++..+......+++|++|++++|.+... ..+..+++|++|++++|.+..... .....+++|+
T Consensus 17 ~~l~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~ 91 (149)
T 2je0_A 17 SDVKELVLDNSR-SNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRVSGGLE-VLAEKCPNLT 91 (149)
T ss_dssp GGCSEEECTTCB-CBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCCCSCTH-HHHHHCTTCC
T ss_pred ccCeEEEccCCc-CChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcccchHH-HHhhhCCCCC
Confidence 345566665553 33111122224456666666666555443 223345566666666555544211 1222245555
Q ss_pred cccccccccCChhHHHHHhhcCCCCCEEeecCCc
Q 013172 136 LLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCY 169 (448)
Q Consensus 136 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 169 (448)
+|+++++. +...........+++|++|++++|.
T Consensus 92 ~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~ 124 (149)
T 2je0_A 92 HLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCE 124 (149)
T ss_dssp EEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCG
T ss_pred EEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCc
Confidence 55554432 2221111223344555555555543
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.01 E-value=1.2e-09 Score=105.20 Aligned_cols=58 Identities=14% Similarity=0.041 Sum_probs=27.4
Q ss_pred CCccEEEeccCCccChhhHHHHHhcCCCCceeeccccccchhhHHHHhhcCCcccEEEeeccCCC
Q 013172 56 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVT 120 (448)
Q Consensus 56 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 120 (448)
++|+.|+++++. +.... . ...+++|+.|+|++|.+..... +..+++|+.|++++|.+.
T Consensus 43 ~~L~~L~l~~n~-i~~l~--~-l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~ 100 (605)
T 1m9s_A 43 NSIDQIIANNSD-IKSVQ--G-IQYLPNVTKLFLNGNKLTDIKP---LTNLKNLGWLFLDENKIK 100 (605)
T ss_dssp TTCCCCBCTTCC-CCCCT--T-GGGCTTCCEEECTTSCCCCCGG---GGGCTTCCEEECCSSCCC
T ss_pred CCCCEEECcCCC-CCCCh--H-HccCCCCCEEEeeCCCCCCChh---hccCCCCCEEECcCCCCC
Confidence 455555555543 22211 1 2345555555555555443221 234555555555555544
No 105
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.01 E-value=3.8e-11 Score=105.07 Aligned_cols=196 Identities=18% Similarity=0.134 Sum_probs=129.6
Q ss_pred eEEEeeeeccccccccccchhccccCCcceeeeccccccChhHHHHHHhhhCCCccEEEeccCCccChhhHHHHHhcCCC
Q 013172 4 LVLNFGFCKGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKS 83 (448)
Q Consensus 4 ~~L~~s~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 83 (448)
.+++++.|.+..+... + .++++.|+++++ .+.......+ ..+ ++|++|+++++. ++..... ..+++
T Consensus 13 ~~l~~~~~~l~~ip~~----~---~~~l~~L~L~~N-~l~~~~~~~~-~~l-~~L~~L~L~~n~-l~~~~~~---~~l~~ 78 (290)
T 1p9a_G 13 LEVNCDKRNLTALPPD----L---PKDTTILHLSEN-LLYTFSLATL-MPY-TRLTQLNLDRAE-LTKLQVD---GTLPV 78 (290)
T ss_dssp CEEECTTSCCSSCCSC----C---CTTCCEEECTTS-CCSEEEGGGG-TTC-TTCCEEECTTSC-CCEEECC---SCCTT
T ss_pred cEEECCCCCCCcCCCC----C---CCCCCEEEcCCC-cCCccCHHHh-hcC-CCCCEEECCCCc-cCcccCC---CCCCc
Confidence 4677777666655432 1 268999999988 4544322222 233 789999999985 5443322 56899
Q ss_pred CceeeccccccchhhHHHHhhcCCcccEEEeeccCCCcHHHHHHHhhccccccccccccccCChhHHHHHhhcCCCCCEE
Q 013172 84 LETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNL 163 (448)
Q Consensus 84 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 163 (448)
|++|++++|.+.. +...+..+++|++|++++|.++......+ ..+++|++|+++++. +... ....+..+++|+.|
T Consensus 79 L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~l~~N~l~~l~~~~~-~~l~~L~~L~L~~N~-l~~~-~~~~~~~l~~L~~L 153 (290)
T 1p9a_G 79 LGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGAL-RGLGELQELYLKGNE-LKTL-PPGLLTPTPKLEKL 153 (290)
T ss_dssp CCEEECCSSCCSS--CCCCTTTCTTCCEEECCSSCCCCCCSSTT-TTCTTCCEEECTTSC-CCCC-CTTTTTTCTTCCEE
T ss_pred CCEEECCCCcCCc--CchhhccCCCCCEEECCCCcCcccCHHHH-cCCCCCCEEECCCCC-CCcc-ChhhcccccCCCEE
Confidence 9999999998863 33344568999999999998875433333 347999999998753 3321 22334467899999
Q ss_pred eecCCccCChhhHHHHHhcCCCCcEEEecCCCCCChhhHHHHhhcCCCcceEeccccccc
Q 013172 164 TLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRI 223 (448)
Q Consensus 164 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~ 223 (448)
+++++. +..... .....+++|+.|+++++ .+.... ..+. ..++|+.+++.+++..
T Consensus 154 ~L~~N~-l~~l~~-~~~~~l~~L~~L~L~~N-~l~~ip-~~~~-~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 154 SLANNN-LTELPA-GLLNGLENLDTLLLQEN-SLYTIP-KGFF-GSHLLPFAFLHGNPWL 208 (290)
T ss_dssp ECTTSC-CSCCCT-TTTTTCTTCCEEECCSS-CCCCCC-TTTT-TTCCCSEEECCSCCBC
T ss_pred ECCCCc-CCccCH-HHhcCcCCCCEEECCCC-cCCccC-hhhc-ccccCCeEEeCCCCcc
Confidence 999986 332221 22346899999999984 344321 1122 2478999999985543
No 106
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.98 E-value=1.6e-09 Score=84.55 Aligned_cols=131 Identities=18% Similarity=0.220 Sum_probs=77.4
Q ss_pred CCCCcEEEccccccccCchHhHhhhcCCCCcEEeccccCCcCchHHHhhccCCCccEEeeeCccccChHHHHHHHhhCCC
Q 013172 261 CQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPE 340 (448)
Q Consensus 261 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 340 (448)
.++|++|+++++. +++..++.....+++|++|+++++ .+... ..+...++|++|+++++ .++.. +......+++
T Consensus 16 ~~~l~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~--~~~~~l~~L~~L~Ls~n-~i~~~-~~~~~~~l~~ 89 (149)
T 2je0_A 16 PSDVKELVLDNSR-SNEGKLEGLTDEFEELEFLSTINV-GLTSI--ANLPKLNKLKKLELSDN-RVSGG-LEVLAEKCPN 89 (149)
T ss_dssp GGGCSEEECTTCB-CBTTBCCSCCTTCTTCCEEECTTS-CCCCC--TTCCCCTTCCEEECCSS-CCCSC-THHHHHHCTT
T ss_pred CccCeEEEccCCc-CChhHHHHHHhhcCCCcEEECcCC-CCCCc--hhhhcCCCCCEEECCCC-cccch-HHHHhhhCCC
Confidence 3567777777653 432223333345778888888775 34433 55556667788877774 34332 3344445778
Q ss_pred CCEEeccCcCCCCHHHHHHHhcCCCCCcEEeccCCCCCChHHH--HHHHHcCccCceEecc
Q 013172 341 LNYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSHCRQITDVGL--SHLVKNCRMLESCHMV 399 (448)
Q Consensus 341 L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~--~~~~~~~~~L~~L~l~ 399 (448)
|+.|++++| .+++.........+++|++|++++| .++.... ......+++|+.|+++
T Consensus 90 L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 90 LTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence 888888877 4555433233455778888888774 4554332 1234457777777764
No 107
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.94 E-value=5.4e-11 Score=101.95 Aligned_cols=62 Identities=15% Similarity=0.081 Sum_probs=34.8
Q ss_pred CCccEEEeccCCccChhhHHHHHhcCCCCceeeccccccchhhHHHHhhcCCcccEEEeeccCCC
Q 013172 56 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVT 120 (448)
Q Consensus 56 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 120 (448)
+++++|+++++. ++...... ...+++|++|++++|.+....... +..+++|++|+++++.+.
T Consensus 35 ~~l~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~ 96 (251)
T 3m19_A 35 ADTEKLDLQSTG-LATLSDAT-FRGLTKLTWLNLDYNQLQTLSAGV-FDDLTELGTLGLANNQLA 96 (251)
T ss_dssp TTCCEEECTTSC-CCCCCTTT-TTTCTTCCEEECTTSCCCCCCTTT-TTTCTTCCEEECTTSCCC
T ss_pred CCCCEEEccCCC-cCccCHhH-hcCcccCCEEECCCCcCCccCHhH-hccCCcCCEEECCCCccc
Confidence 467777777664 33322222 235677777777776665433222 234667777777666654
No 108
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.94 E-value=1.2e-10 Score=99.75 Aligned_cols=174 Identities=17% Similarity=0.084 Sum_probs=114.4
Q ss_pred EEEeeeeccccccccccchhccccCCcceeeeccccccChhHHHHHHhhhCCCccEEEeccCCccChhhHHHHHhcCCCC
Q 013172 5 VLNFGFCKGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSL 84 (448)
Q Consensus 5 ~L~~s~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 84 (448)
+++.+.+....+... + .++++.|+++++ .+.......+ ..+ ++|++|+++++. ++...... ...+++|
T Consensus 18 ~l~~~~~~l~~~p~~----~---~~~l~~L~L~~n-~l~~~~~~~~-~~l-~~L~~L~L~~n~-l~~~~~~~-~~~l~~L 85 (251)
T 3m19_A 18 EVDCQGKSLDSVPSG----I---PADTEKLDLQST-GLATLSDATF-RGL-TKLTWLNLDYNQ-LQTLSAGV-FDDLTEL 85 (251)
T ss_dssp EEECTTCCCSSCCSC----C---CTTCCEEECTTS-CCCCCCTTTT-TTC-TTCCEEECTTSC-CCCCCTTT-TTTCTTC
T ss_pred EEecCCCCccccCCC----C---CCCCCEEEccCC-CcCccCHhHh-cCc-ccCCEEECCCCc-CCccCHhH-hccCCcC
Confidence 466665555544432 1 268999999988 4443222222 233 789999999985 55433322 3568999
Q ss_pred ceeeccccccchhhHHHHhhcCCcccEEEeeccCCCcHHHHHHHhhccccccccccccccCChhHHHHHhhcCCCCCEEe
Q 013172 85 ETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLT 164 (448)
Q Consensus 85 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 164 (448)
++|++++|.+...... .+..+++|++|++++|.+.......+ ..+++|++|+++++. +... ....+..+++|+.|+
T Consensus 86 ~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~Ls~N~-l~~~-~~~~~~~l~~L~~L~ 161 (251)
T 3m19_A 86 GTLGLANNQLASLPLG-VFDHLTQLDKLYLGGNQLKSLPSGVF-DRLTKLKELRLNTNQ-LQSI-PAGAFDKLTNLQTLS 161 (251)
T ss_dssp CEEECTTSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSC-CCCC-CTTTTTTCTTCCEEE
T ss_pred CEEECCCCcccccChh-HhcccCCCCEEEcCCCcCCCcChhHh-ccCCcccEEECcCCc-CCcc-CHHHcCcCcCCCEEE
Confidence 9999999988754333 33468999999999998875433223 347999999998753 3321 112344679999999
Q ss_pred ecCCccCChhhHHHHHhcCCCCcEEEecCCCC
Q 013172 165 LSDCYFLSDMGLEAIATGCKELTHLEINGCHN 196 (448)
Q Consensus 165 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 196 (448)
++++. +..... .....+++|+.|++.++..
T Consensus 162 L~~N~-l~~~~~-~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 162 LSTNQ-LQSVPH-GAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp CCSSC-CSCCCT-TTTTTCTTCCEEECCSCCB
T ss_pred CCCCc-CCccCH-HHHhCCCCCCEEEeeCCce
Confidence 99986 332221 2234689999999998543
No 109
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.93 E-value=8.5e-10 Score=88.08 Aligned_cols=134 Identities=20% Similarity=0.166 Sum_probs=66.1
Q ss_pred CCCCcEEEccccccccCchHhHhhhcCCCCcEEeccccCCcCchHHHhhccCCCccEEeeeCccccChHHHHHHHhhCCC
Q 013172 261 CQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPE 340 (448)
Q Consensus 261 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 340 (448)
.++|++|++.++. +++..++.....+++|++|+++++. +... ..+..+++|+.|+++++ .++.. +......+++
T Consensus 23 ~~~L~~L~l~~n~-l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~--~~~~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~ 96 (168)
T 2ell_A 23 PAAVRELVLDNCK-SNDGKIEGLTAEFVNLEFLSLINVG-LISV--SNLPKLPKLKKLELSEN-RIFGG-LDMLAEKLPN 96 (168)
T ss_dssp TTSCSEEECCSCB-CBTTBCSSCCGGGGGCCEEEEESSC-CCCC--SSCCCCSSCCEEEEESC-CCCSC-CCHHHHHCTT
T ss_pred cccCCEEECCCCC-CChhhHHHHHHhCCCCCEEeCcCCC-CCCh--hhhccCCCCCEEECcCC-cCchH-HHHHHhhCCC
Confidence 3567777777653 4322233333456777777777753 4433 44555556777777664 33321 2233334666
Q ss_pred CCEEeccCcCCCCHHHHHHHhcCCCCCcEEeccCCCCCChHHH--HHHHHcCccCceEeccCCC
Q 013172 341 LNYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSHCRQITDVGL--SHLVKNCRMLESCHMVYCP 402 (448)
Q Consensus 341 L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~--~~~~~~~~~L~~L~l~~c~ 402 (448)
|+.|++++| .+++.........+++|++|++++| .++.... ...+..+++|+.|++++|.
T Consensus 97 L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 97 LTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp CCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred CCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 666666666 3433211112234566666666553 2333221 1122344555555554443
No 110
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.92 E-value=1.4e-08 Score=82.03 Aligned_cols=119 Identities=13% Similarity=0.136 Sum_probs=67.5
Q ss_pred hHhhhcCCCCcEEeccccCCcCchHHHhhcc----CCCccEEeeeCccccChHHHHHHH---hhCCCCCEEeccCcCCCC
Q 013172 281 VAVGEHCNSLTELSLRFCDRVGDEALISIGQ----GCSLQHLNVSGCHQIGDAGIMAIA---KGCPELNYLDVSVLQNLG 353 (448)
Q Consensus 281 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~----~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~l~ 353 (448)
.......+.|++|+++++..+++.+...+.. .++|++|+++++ .+++.+...+. ...++|++|++++| .++
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~ 106 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESN-FIS 106 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSS-CCC
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCC-cCC
Confidence 3344556777777777653566665554433 345777777663 46665544333 23456677777666 566
Q ss_pred HHHHHHHhc---CCCCCcEEec--cCCCCCChHHHHHHHH---cCccCceEeccCCC
Q 013172 354 DQAMVELGK---GCPLLKDVVL--SHCRQITDVGLSHLVK---NCRMLESCHMVYCP 402 (448)
Q Consensus 354 ~~~~~~~~~---~~~~L~~L~l--~~c~~l~~~~~~~~~~---~~~~L~~L~l~~c~ 402 (448)
+.+...++. ..++|++|++ ++ +.+++.+...+.+ ..++|+.|++++|.
T Consensus 107 ~~g~~~l~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 107 GSGILALVEALQSNTSLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHHHHGGGGCSSCCEEECCCCS-SCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHHHHHhCCCceEEEecCCC-CCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 666555432 3456666666 44 4466665444332 34556666666554
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.92 E-value=3.2e-09 Score=91.38 Aligned_cols=83 Identities=12% Similarity=-0.007 Sum_probs=44.4
Q ss_pred CCCCEEeccCcCCCCHHHHHHHhcCCCCCcEEeccCCCCCChHHHHHHHHcCccCceEeccCCCCCCHHHHHHHHhcCcc
Q 013172 339 PELNYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSHCRQITDVGLSHLVKNCRMLESCHMVYCPGITAAGVATVVSGCAN 418 (448)
Q Consensus 339 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~ 418 (448)
++|+.|++++| .+++. .. ...+++|++|+++++ ++++.. . ...+++|+.|++++|. ++.. ..+..+++
T Consensus 106 ~~L~~L~L~~N-~l~~~--~~-l~~l~~L~~L~Ls~N-~i~~~~--~-l~~l~~L~~L~L~~N~-i~~~---~~l~~l~~ 173 (263)
T 1xeu_A 106 ACLSRLFLDNN-ELRDT--DS-LIHLKNLEILSIRNN-KLKSIV--M-LGFLSKLEVLDLHGNE-ITNT---GGLTRLKK 173 (263)
T ss_dssp SSCCEEECCSS-CCSBS--GG-GTTCTTCCEEECTTS-CCCBCG--G-GGGCTTCCEEECTTSC-CCBC---TTSTTCCC
T ss_pred CcccEEEccCC-ccCCC--hh-hcCcccccEEECCCC-cCCCCh--H-HccCCCCCEEECCCCc-Ccch---HHhccCCC
Confidence 55666666665 33322 11 234666666666663 355432 1 2346666666666664 2222 22445677
Q ss_pred ceEEEEeeeeecccc
Q 013172 419 IKKVMVEKWKVSERT 433 (448)
Q Consensus 419 L~~L~l~~~~~~~~~ 433 (448)
|+.|++++|++....
T Consensus 174 L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 174 VNWIDLTGQKCVNEP 188 (263)
T ss_dssp CCEEEEEEEEEECCC
T ss_pred CCEEeCCCCcccCCc
Confidence 777777777665543
No 112
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.90 E-value=8e-10 Score=88.23 Aligned_cols=135 Identities=19% Similarity=0.146 Sum_probs=80.2
Q ss_pred cCCcceeeeccccccChhHHHHHHhhhCCCccEEEeccCCccChhhHHHHHhcCCCCceeeccccccchhhHHHHhhcCC
Q 013172 28 CNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCP 107 (448)
Q Consensus 28 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 107 (448)
.++|++|+++++ .+.+..+...+..+ ++|++|++++|. ++.. .....+++|++|++++|.+... +......++
T Consensus 23 ~~~L~~L~l~~n-~l~~~~i~~~~~~l-~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~ 95 (168)
T 2ell_A 23 PAAVRELVLDNC-KSNDGKIEGLTAEF-VNLEFLSLINVG-LISV---SNLPKLPKLKKLELSENRIFGG-LDMLAEKLP 95 (168)
T ss_dssp TTSCSEEECCSC-BCBTTBCSSCCGGG-GGCCEEEEESSC-CCCC---SSCCCCSSCCEEEEESCCCCSC-CCHHHHHCT
T ss_pred cccCCEEECCCC-CCChhhHHHHHHhC-CCCCEEeCcCCC-CCCh---hhhccCCCCCEEECcCCcCchH-HHHHHhhCC
Confidence 367888888777 34421222222333 678888888775 4433 2334577888888887777653 333444577
Q ss_pred cccEEEeeccCCCcHHHHHHHhhccccccccccccccCChhH-HHHHhhcCCCCCEEeecCCc
Q 013172 108 LLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKG-LHAVGKGCKKLKNLTLSDCY 169 (448)
Q Consensus 108 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~ 169 (448)
+|++|++++|.+...........+++|+.|+++++.-..... ....+..+++|+.|+++++.
T Consensus 96 ~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 96 NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp TCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred CCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 888888887777653221222346788888887643211111 12345567888888888775
No 113
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.82 E-value=8.8e-08 Score=77.36 Aligned_cols=118 Identities=14% Similarity=0.094 Sum_probs=58.4
Q ss_pred CCCccEEeeeCccccChHHHHHHHh---hCCCCCEEeccCcCCCCHHHHHHHhc---CCCCCcEEeccCCCCCChHHHHH
Q 013172 312 GCSLQHLNVSGCHQIGDAGIMAIAK---GCPELNYLDVSVLQNLGDQAMVELGK---GCPLLKDVVLSHCRQITDVGLSH 385 (448)
Q Consensus 312 ~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~l~~~~~~~~~~---~~~~L~~L~l~~c~~l~~~~~~~ 385 (448)
.++|++|+++++..+++.+...+.. ..++|++|++++| .+++.+...++. ..++|++|++++| .+++.+...
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~g~~~ 112 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESN-FISGSGILA 112 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHHHHHH
Confidence 3446666665543455544443332 3455666666655 455555443322 3355666666553 355555554
Q ss_pred HHHc---CccCceEec--cCCCCCCHHHHH---HHHhcCccceEEEEeeeeeccc
Q 013172 386 LVKN---CRMLESCHM--VYCPGITAAGVA---TVVSGCANIKKVMVEKWKVSER 432 (448)
Q Consensus 386 ~~~~---~~~L~~L~l--~~c~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~ 432 (448)
+... .++|++|++ ++|. +++.+.. ..+...++|++|++++|.+...
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~ 166 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYHFTQQGPR 166 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECCCSSHHHH
T ss_pred HHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEeccCCCCChH
Confidence 4432 334666666 3332 5544422 2333445566666655555443
No 114
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.81 E-value=9e-10 Score=98.41 Aligned_cols=37 Identities=27% Similarity=0.272 Sum_probs=24.5
Q ss_pred cCCcceeeeccccccChhHHHHHHhhhCCCccEEEeccCC
Q 013172 28 CNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACV 67 (448)
Q Consensus 28 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 67 (448)
.+++++|.+++. +....+..+.... ++|+.|+++++.
T Consensus 24 ~~~l~~L~l~g~--i~~~~~~~l~~~l-~~L~~LdLs~n~ 60 (329)
T 3sb4_A 24 ANSITHLTLTGK--LNAEDFRHLRDEF-PSLKVLDISNAE 60 (329)
T ss_dssp HHHCSEEEEEEE--ECHHHHHHHHHSC-TTCCEEEEEEEE
T ss_pred hCceeEEEEecc--ccHHHHHHHHHhh-ccCeEEecCcce
Confidence 367888888864 4555555544323 788888888864
No 115
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.79 E-value=2.6e-09 Score=95.42 Aligned_cols=268 Identities=14% Similarity=0.088 Sum_probs=120.8
Q ss_pred CCccEEEeccCCccChhhHHHHHhcCCCCceeeccccccchhhHHHHhhcCCcccEEEeeccCCCcHHHHHHHhh-----
Q 013172 56 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQ----- 130 (448)
Q Consensus 56 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~----- 130 (448)
+++++|.+++. +....+..+...+++|++|+|++|.+....... ..++.++.+.+..+.+.+. ....
T Consensus 25 ~~l~~L~l~g~--i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~--~~~~~~~~~~~~~~~I~~~----aF~~~~~~~ 96 (329)
T 3sb4_A 25 NSITHLTLTGK--LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKA--GTYPNGKFYIYMANFVPAY----AFSNVVNGV 96 (329)
T ss_dssp HHCSEEEEEEE--ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESS--SSSGGGCCEEECTTEECTT----TTEEEETTE
T ss_pred CceeEEEEecc--ccHHHHHHHHHhhccCeEEecCcceeEEecCcc--ccccccccccccccccCHH----Hhccccccc
Confidence 47899999873 566666666555899999999998876211110 1123344455544444332 2233
Q ss_pred ---ccccccccccccccCChhHHHHHhhcCCCCCEEeecCCcc--CChhhHHHHHhcCCCCcEEEecCCCC-CChhhHH-
Q 013172 131 ---CLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYF--LSDMGLEAIATGCKELTHLEINGCHN-IGTMGLE- 203 (448)
Q Consensus 131 ---~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~- 203 (448)
|++|+.|++.. .+..- -...+..|++|+.+++.++.. +....+ ..+.++..+....... .....+.
T Consensus 97 ~~g~~~L~~l~L~~--~i~~I-~~~aF~~~~~L~~l~l~~n~i~~i~~~aF----~~~~~l~~l~~~~~~~~~~~~~i~~ 169 (329)
T 3sb4_A 97 TKGKQTLEKVILSE--KIKNI-EDAAFKGCDNLKICQIRKKTAPNLLPEAL----ADSVTAIFIPLGSSDAYRFKNRWEH 169 (329)
T ss_dssp EEECTTCCC-CBCT--TCCEE-CTTTTTTCTTCCEEEBCCSSCCEECTTSS----CTTTCEEEECTTCTHHHHTSTTTTT
T ss_pred ccccCCCcEEECCc--cccch-hHHHhhcCcccceEEcCCCCccccchhhh----cCCCceEEecCcchhhhhccccccc
Confidence 67777777764 12111 112234567777777766541 222111 1234444333222000 0000000
Q ss_pred HHhhcCCCcc-eEecccccccCchhHHHHhccCcCCceEeccCCcCcChHHHHHHHHhCCCCcEEEccccccccCchHhH
Q 013172 204 SIGKFCRNLT-ELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVA 282 (448)
Q Consensus 204 ~l~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 282 (448)
.....|..|+ .+.+.....+.. .+........+++.+.+.+. +.......+...+++|+.+++.++. ++..+- .
T Consensus 170 ~~f~~~~~L~~~i~~~~~~~l~~-~~~~~~~~~~~~~~l~~~~~--l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~-~ 244 (329)
T 3sb4_A 170 FAFIEGEPLETTIQVGAMGKLED-EIMKAGLQPRDINFLTIEGK--LDNADFKLIRDYMPNLVSLDISKTN-ATTIPD-F 244 (329)
T ss_dssp SCEEESCCCEEEEEECTTCCHHH-HHHHTTCCGGGCSEEEEEEC--CCHHHHHHHHHHCTTCCEEECTTBC-CCEECT-T
T ss_pred cccccccccceeEEecCCCcHHH-HHhhcccCccccceEEEeee--ecHHHHHHHHHhcCCCeEEECCCCC-cceecH-h
Confidence 0011233444 333322111111 11111112345566666542 4444444454556777777776532 222211 1
Q ss_pred hhhcCCCCcEEeccccCCcCchHHHhhccCCCcc-EEeeeCccccChHHHHHHHhhCCCCCEEeccC
Q 013172 283 VGEHCNSLTELSLRFCDRVGDEALISIGQGCSLQ-HLNVSGCHQIGDAGIMAIAKGCPELNYLDVSV 348 (448)
Q Consensus 283 ~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 348 (448)
.+.+|++|+++++... +...+..++....+|+ .+.+.+ .++..+-. .+.+|++|+.+++..
T Consensus 245 aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~-aF~~c~~L~~l~l~~ 306 (329)
T 3sb4_A 245 TFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFG-AFMGCDNLRYVLATG 306 (329)
T ss_dssp TTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTT-TTTTCTTEEEEEECS
T ss_pred hhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchh-hhhCCccCCEEEeCC
Confidence 2235667777766552 4444444444444566 666654 22221111 122455555555543
No 116
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.77 E-value=1e-09 Score=91.75 Aligned_cols=134 Identities=14% Similarity=0.078 Sum_probs=65.5
Q ss_pred CCccEEEeccCCccChhhHHHHHhcCCCCceeeccccccchhhHHHHhhcCCcccEEEeeccCCCcHHHHHHHhhccccc
Q 013172 56 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLE 135 (448)
Q Consensus 56 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 135 (448)
+.+++|+++++. ++......+...+++|++|++++|.++......+ ..+++|++|++++|.+.......+ ..+++|+
T Consensus 32 ~~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~ 108 (220)
T 2v70_A 32 QYTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAF-EGASGVNEILLTSNRLENVQHKMF-KGLESLK 108 (220)
T ss_dssp TTCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTT-TTCTTCCEEECCSSCCCCCCGGGG-TTCSSCC
T ss_pred CCCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCCcCCEECHHHh-CCCCCCCEEECCCCccCccCHhHh-cCCcCCC
Confidence 345566666553 3322111122345666666666665543322222 235666666666665544332222 2256666
Q ss_pred cccccccccCChhHHHHHhhcCCCCCEEeecCCccCChhhHHHHHhcCCCCcEEEecCCCC
Q 013172 136 LLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHN 196 (448)
Q Consensus 136 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 196 (448)
+|+++++. +... .+..+..+++|+.|+++++. +.... ......+++|+.|++.++..
T Consensus 109 ~L~Ls~N~-l~~~-~~~~~~~l~~L~~L~L~~N~-l~~~~-~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 109 TLMLRSNR-ITCV-GNDSFIGLSSVRLLSLYDNQ-ITTVA-PGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp EEECTTSC-CCCB-CTTSSTTCTTCSEEECTTSC-CCCBC-TTTTTTCTTCCEEECCSCCE
T ss_pred EEECCCCc-CCeE-CHhHcCCCccCCEEECCCCc-CCEEC-HHHhcCCCCCCEEEecCcCC
Confidence 66665532 2211 01122345777777777765 32211 11233567788888877543
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.73 E-value=1.5e-08 Score=87.14 Aligned_cols=58 Identities=12% Similarity=0.127 Sum_probs=31.5
Q ss_pred CCccEEEeccCCccChhhHHHHHhcCCCCceeeccccccchhhHHHHhhcCCcccEEEeeccCCC
Q 013172 56 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVT 120 (448)
Q Consensus 56 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 120 (448)
++|++|++++|. ++... . ...+++|++|++++|.+..... +..+++|++|++++|.+.
T Consensus 41 ~~L~~L~l~~n~-i~~l~--~-l~~l~~L~~L~L~~N~i~~~~~---l~~l~~L~~L~L~~N~l~ 98 (263)
T 1xeu_A 41 SGVQNFNGDNSN-IQSLA--G-MQFFTNLKELHLSHNQISDLSP---LKDLTKLEELSVNRNRLK 98 (263)
T ss_dssp TTCSEEECTTSC-CCCCT--T-GGGCTTCCEEECCSSCCCCCGG---GTTCSSCCEEECCSSCCS
T ss_pred CcCcEEECcCCC-cccch--H-HhhCCCCCEEECCCCccCCChh---hccCCCCCEEECCCCccC
Confidence 566666666653 33322 1 2445666666666666554332 334566666666655554
No 118
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.72 E-value=3.9e-10 Score=101.71 Aligned_cols=79 Identities=28% Similarity=0.291 Sum_probs=39.7
Q ss_pred CCcceEecccccccCchhHHHHhccCcCCceEeccCCcCcChHHHHHHHHhCCCCcEEEccccccccCchHhHhhhcCCC
Q 013172 210 RNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNS 289 (448)
Q Consensus 210 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 289 (448)
.+|+++.+.+++.+...+. ..+..+++|+.|+++++ .+..... ..+.+|++|.+.++..++.. +. ...+++
T Consensus 177 ~~L~~l~l~~~n~l~~i~~-~~f~~l~~L~~LdLs~N-~l~~lp~----~~~~~L~~L~~l~~~~l~~l--P~-l~~l~~ 247 (350)
T 4ay9_X 177 TQLDELNLSDNNNLEELPN-DVFHGASGPVILDISRT-RIHSLPS----YGLENLKKLRARSTYNLKKL--PT-LEKLVA 247 (350)
T ss_dssp EEEEEEECTTCTTCCCCCT-TTTTTEECCSEEECTTS-CCCCCCS----SSCTTCCEEECTTCTTCCCC--CC-TTTCCS
T ss_pred cchhHHhhccCCcccCCCH-HHhccCcccchhhcCCC-CcCccCh----hhhccchHhhhccCCCcCcC--CC-chhCcC
Confidence 4666666655444433221 12244667777777764 2332110 12556666666655443322 11 234677
Q ss_pred CcEEeccc
Q 013172 290 LTELSLRF 297 (448)
Q Consensus 290 L~~L~l~~ 297 (448)
|+.+++.+
T Consensus 248 L~~l~l~~ 255 (350)
T 4ay9_X 248 LMEASLTY 255 (350)
T ss_dssp CCEEECSC
T ss_pred hhhCcCCC
Confidence 77777754
No 119
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.71 E-value=5.6e-10 Score=100.66 Aligned_cols=153 Identities=17% Similarity=0.114 Sum_probs=66.1
Q ss_pred cCCCCCEEeecCCccCChhhHHHHHhcCCCCcEEEecCCCCCChhhHHHHhhcCCCcceEecccccccCchhHHHHhccC
Q 013172 156 GCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGC 235 (448)
Q Consensus 156 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 235 (448)
.+++|+.|+++++. +....... .....++..+++.++..+.......+......++.|++++ +.+...... ....
T Consensus 102 ~l~~L~~L~l~~n~-l~~~~~~~-~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~-N~i~~i~~~--~f~~ 176 (350)
T 4ay9_X 102 NLPNLQYLLISNTG-IKHLPDVH-KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK-NGIQEIHNS--AFNG 176 (350)
T ss_dssp CCTTCCEEEEEEEC-CSSCCCCT-TCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS-SCCCEECTT--SSTT
T ss_pred hccccccccccccc-cccCCchh-hcccchhhhhhhccccccccccccchhhcchhhhhhcccc-ccccCCChh--hccc
Confidence 44566666666554 21110000 1123456666665544443332222222224567777766 333322111 1123
Q ss_pred cCCceEeccCCcCcChHHHHHHHHhCCCCcEEEccccccccCchHhHhhhcCCCCcEEeccccCCcCchHHHhhccCCCc
Q 013172 236 KSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCSL 315 (448)
Q Consensus 236 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 315 (448)
++|+++.+.+++.+..... ..+..+++|+.|+++++ .++.... ..+.+|+.|.+.++..+.. +..+..+.+|
T Consensus 177 ~~L~~l~l~~~n~l~~i~~-~~f~~l~~L~~LdLs~N-~l~~lp~----~~~~~L~~L~~l~~~~l~~--lP~l~~l~~L 248 (350)
T 4ay9_X 177 TQLDELNLSDNNNLEELPN-DVFHGASGPVILDISRT-RIHSLPS----YGLENLKKLRARSTYNLKK--LPTLEKLVAL 248 (350)
T ss_dssp EEEEEEECTTCTTCCCCCT-TTTTTEECCSEEECTTS-CCCCCCS----SSCTTCCEEECTTCTTCCC--CCCTTTCCSC
T ss_pred cchhHHhhccCCcccCCCH-HHhccCcccchhhcCCC-CcCccCh----hhhccchHhhhccCCCcCc--CCCchhCcCh
Confidence 5666776665444332211 11233566666666664 2332111 1244555555554433221 1123334445
Q ss_pred cEEeee
Q 013172 316 QHLNVS 321 (448)
Q Consensus 316 ~~L~l~ 321 (448)
+.+++.
T Consensus 249 ~~l~l~ 254 (350)
T 4ay9_X 249 MEASLT 254 (350)
T ss_dssp CEEECS
T ss_pred hhCcCC
Confidence 555554
No 120
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.69 E-value=1.4e-08 Score=96.75 Aligned_cols=11 Identities=0% Similarity=-0.058 Sum_probs=5.4
Q ss_pred CCCCcEEEccc
Q 013172 261 CQNLKKLHIRR 271 (448)
Q Consensus 261 ~~~L~~L~l~~ 271 (448)
+++|+.|++++
T Consensus 229 l~~L~~L~L~~ 239 (571)
T 3cvr_A 229 LDPTCTIILED 239 (571)
T ss_dssp SCTTEEEECCS
T ss_pred CCCCCEEEeeC
Confidence 44455555544
No 121
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.69 E-value=3.3e-09 Score=88.60 Aligned_cols=141 Identities=17% Similarity=0.213 Sum_probs=94.3
Q ss_pred CCcceeeeccccccChhHHHHHHhhhCCCccEEEeccCCccChhhHHHHHhcCCCCceeeccccccchhhHHHHhhcCCc
Q 013172 29 NQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPL 108 (448)
Q Consensus 29 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 108 (448)
++++.|+++++ .+.......+ ..+ ++|++|+++++. ++......+ ..+++|++|++++|.++.... ..+..+++
T Consensus 32 ~~l~~L~l~~n-~i~~i~~~~~-~~l-~~L~~L~Ls~N~-i~~~~~~~~-~~l~~L~~L~Ls~N~l~~l~~-~~f~~l~~ 105 (220)
T 2v9t_B 32 ETITEIRLEQN-TIKVIPPGAF-SPY-KKLRRIDLSNNQ-ISELAPDAF-QGLRSLNSLVLYGNKITELPK-SLFEGLFS 105 (220)
T ss_dssp TTCCEEECCSS-CCCEECTTSS-TTC-TTCCEEECCSSC-CCEECTTTT-TTCSSCCEEECCSSCCCCCCT-TTTTTCTT
T ss_pred cCCCEEECCCC-cCCCcCHhHh-hCC-CCCCEEECCCCc-CCCcCHHHh-hCCcCCCEEECCCCcCCccCH-hHccCCCC
Confidence 68999999988 4443222112 223 789999999985 554333333 568999999999998875332 33456899
Q ss_pred ccEEEeeccCCCcHHHHHHHhhccccccccccccccCChhHHHHHhhcCCCCCEEeecCCccCChhhHHH
Q 013172 109 LRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEA 178 (448)
Q Consensus 109 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 178 (448)
|++|++++|.+.......+. .+++|+.|+++++. +.... ...+..+++|+.|++++++..-+-.+.+
T Consensus 106 L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~N~-l~~~~-~~~~~~l~~L~~L~L~~N~~~c~c~l~~ 172 (220)
T 2v9t_B 106 LQLLLLNANKINCLRVDAFQ-DLHNLNLLSLYDNK-LQTIA-KGTFSPLRAIQTMHLAQNPFICDCHLKW 172 (220)
T ss_dssp CCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSC-CSCCC-TTTTTTCTTCCEEECCSSCEECSGGGHH
T ss_pred CCEEECCCCCCCEeCHHHcC-CCCCCCEEECCCCc-CCEEC-HHHHhCCCCCCEEEeCCCCcCCCCccHH
Confidence 99999999988765444443 37999999998743 32211 1223467899999999987433333333
No 122
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.67 E-value=2e-09 Score=97.44 Aligned_cols=132 Identities=19% Similarity=0.191 Sum_probs=64.3
Q ss_pred CCccEEEeccCCccChhhHHHHHhcCCCCceeeccccccchhhHHHHhhcCCcccEEEeeccCCCcHHHHHHHhhccccc
Q 013172 56 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLE 135 (448)
Q Consensus 56 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 135 (448)
+.++.|+++++. ++......+...+++|++|++++|.+.......+ ..+++|++|++++|.+.......+ ..+++|+
T Consensus 39 ~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~ 115 (361)
T 2xot_A 39 SYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAF-VPVPNLRYLDLSSNHLHTLDEFLF-SDLQALE 115 (361)
T ss_dssp TTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSSCCCEECTTTT-TTCTTCCEEECCSSCCCEECTTTT-TTCTTCC
T ss_pred CCCCEEECCCCC-CCccChhhhhhcccccCEEECCCCcCCccChhhc-cCCCCCCEEECCCCcCCcCCHHHh-CCCcCCC
Confidence 457777777764 4443332222256777777777776654332222 346677777777766654322222 2255666
Q ss_pred cccccccccCChhHHHHHhhcCCCCCEEeecCCccCChhhHHHH--HhcCCCCcEEEecC
Q 013172 136 LLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAI--ATGCKELTHLEING 193 (448)
Q Consensus 136 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~~~L~~L~l~~ 193 (448)
.|+++++. +... .+..+..+++|+.|+++++. +.......+ ...+++|+.|++++
T Consensus 116 ~L~L~~N~-i~~~-~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~ 172 (361)
T 2xot_A 116 VLLLYNNH-IVVV-DRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSS 172 (361)
T ss_dssp EEECCSSC-CCEE-CTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCS
T ss_pred EEECCCCc-ccEE-CHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCC
Confidence 66665532 2211 01122345666666666654 222111100 02355666666655
No 123
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.66 E-value=1.4e-08 Score=81.67 Aligned_cols=134 Identities=16% Similarity=0.081 Sum_probs=86.7
Q ss_pred ccCCcceeeeccccccChhHHHHHHhhhCCCccEEEeccCCccChhhHHHHHhcCCCCceeeccccccchhhHHHHhhcC
Q 013172 27 VCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGC 106 (448)
Q Consensus 27 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 106 (448)
.+++|++|+++++ .+... ..+. ...++|++|++++|. ++.. .....+++|++|++++|.++... ..++..+
T Consensus 17 ~~~~L~~L~l~~n-~l~~i--~~~~-~~~~~L~~L~Ls~N~-l~~~---~~l~~l~~L~~L~Ls~N~l~~~~-~~~~~~l 87 (176)
T 1a9n_A 17 NAVRDRELDLRGY-KIPVI--ENLG-ATLDQFDAIDFSDNE-IRKL---DGFPLLRRLKTLLVNNNRICRIG-EGLDQAL 87 (176)
T ss_dssp CTTSCEEEECTTS-CCCSC--CCGG-GGTTCCSEEECCSSC-CCEE---CCCCCCSSCCEEECCSSCCCEEC-SCHHHHC
T ss_pred CcCCceEEEeeCC-CCchh--HHhh-hcCCCCCEEECCCCC-CCcc---cccccCCCCCEEECCCCcccccC-cchhhcC
Confidence 4578899999888 44432 1222 222589999999875 5443 22356788999999988886532 2233458
Q ss_pred CcccEEEeeccCCCcHHHHHHHhhccccccccccccccCChh-HHHHHhhcCCCCCEEeecCCc
Q 013172 107 PLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDK-GLHAVGKGCKKLKNLTLSDCY 169 (448)
Q Consensus 107 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~ 169 (448)
++|++|++++|.+...........+++|+.|+++++.-.... ........+++|+.|+++++.
T Consensus 88 ~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 88 PDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp TTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 899999998888865332112234788999999875421111 112245678999999998875
No 124
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.64 E-value=7.3e-09 Score=99.05 Aligned_cols=33 Identities=18% Similarity=0.149 Sum_probs=16.4
Q ss_pred CCCCceeeccccccchhhHHHHhhcCCcccEEEee
Q 013172 81 CKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQ 115 (448)
Q Consensus 81 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 115 (448)
+++|+.|++++|.+. .++..+..+++|+.|+++
T Consensus 348 ~~~L~~L~Ls~n~L~--~Lp~~i~~l~~L~~L~l~ 380 (567)
T 1dce_A 348 DEQLFRCELSVEKST--VLQSELESCKELQELEPE 380 (567)
T ss_dssp TTTSSSCCCCHHHHH--HHHHHHHHHHHHHHHCTT
T ss_pred CccceeccCChhhHH--hhHHHHHHHHHHHHhccc
Confidence 455666666655543 223223335555555553
No 125
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.63 E-value=4.4e-09 Score=87.85 Aligned_cols=142 Identities=18% Similarity=0.144 Sum_probs=96.9
Q ss_pred CCccEEEeccCCccChhhHHHHHhcCCCCceeeccccccchhhHHHHhhcCCcccEEEeeccCCCcHHHHHHHhhccccc
Q 013172 56 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLE 135 (448)
Q Consensus 56 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 135 (448)
+++++|+++++. ++...... ...+++|++|++++|.+.......+ ..+++|++|++++|.+...... ....+++|+
T Consensus 32 ~~l~~L~l~~n~-i~~i~~~~-~~~l~~L~~L~Ls~N~i~~~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~-~f~~l~~L~ 107 (220)
T 2v9t_B 32 ETITEIRLEQNT-IKVIPPGA-FSPYKKLRRIDLSNNQISELAPDAF-QGLRSLNSLVLYGNKITELPKS-LFEGLFSLQ 107 (220)
T ss_dssp TTCCEEECCSSC-CCEECTTS-STTCTTCCEEECCSSCCCEECTTTT-TTCSSCCEEECCSSCCCCCCTT-TTTTCTTCC
T ss_pred cCCCEEECCCCc-CCCcCHhH-hhCCCCCCEEECCCCcCCCcCHHHh-hCCcCCCEEECCCCcCCccCHh-HccCCCCCC
Confidence 689999999985 55433322 3568999999999999876543444 4589999999999988754332 234489999
Q ss_pred cccccccccCChhHHHHHhhcCCCCCEEeecCCccCChhhHHHHHhcCCCCcEEEecCCCCCChhhHHHH
Q 013172 136 LLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESI 205 (448)
Q Consensus 136 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l 205 (448)
.|+++++. +.... +..+..+++|+.|+++++. +..... .....+++|+.|++.++....+..+..+
T Consensus 108 ~L~L~~N~-l~~~~-~~~~~~l~~L~~L~L~~N~-l~~~~~-~~~~~l~~L~~L~L~~N~~~c~c~l~~l 173 (220)
T 2v9t_B 108 LLLLNANK-INCLR-VDAFQDLHNLNLLSLYDNK-LQTIAK-GTFSPLRAIQTMHLAQNPFICDCHLKWL 173 (220)
T ss_dssp EEECCSSC-CCCCC-TTTTTTCTTCCEEECCSSC-CSCCCT-TTTTTCTTCCEEECCSSCEECSGGGHHH
T ss_pred EEECCCCC-CCEeC-HHHcCCCCCCCEEECCCCc-CCEECH-HHHhCCCCCCEEEeCCCCcCCCCccHHH
Confidence 99998743 33221 2234467999999999986 332221 1234588999999998654444444444
No 126
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.63 E-value=5.1e-09 Score=94.73 Aligned_cols=178 Identities=19% Similarity=0.056 Sum_probs=109.4
Q ss_pred EEEeeeeccccccccccchhccccCCcceeeeccccccChhHHHHHHhhhCCCccEEEeccCCccChhhHHHHHhcCCCC
Q 013172 5 VLNFGFCKGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSL 84 (448)
Q Consensus 5 ~L~~s~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 84 (448)
+++.+.+.+..+... + .+.++.|+|+++ .++......+...+ ++|++|++++|. ++...... ...+++|
T Consensus 22 ~l~c~~~~l~~iP~~----~---~~~l~~L~Ls~N-~l~~l~~~~~~~~l-~~L~~L~L~~N~-i~~i~~~~-~~~l~~L 90 (361)
T 2xot_A 22 ILSCSKQQLPNVPQS----L---PSYTALLDLSHN-NLSRLRAEWTPTRL-TNLHSLLLSHNH-LNFISSEA-FVPVPNL 90 (361)
T ss_dssp EEECCSSCCSSCCSS----C---CTTCSEEECCSS-CCCEECTTSSSSCC-TTCCEEECCSSC-CCEECTTT-TTTCTTC
T ss_pred EEEeCCCCcCccCcc----C---CCCCCEEECCCC-CCCccChhhhhhcc-cccCEEECCCCc-CCccChhh-ccCCCCC
Confidence 455555554444421 1 256889999988 45543322221133 789999999875 55433332 2468999
Q ss_pred ceeeccccccchhhHHHHhhcCCcccEEEeeccCCCcHHHHHHHhhccccccccccccccCChhHHHHHh---hcCCCCC
Q 013172 85 ETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVG---KGCKKLK 161 (448)
Q Consensus 85 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~ 161 (448)
++|++++|.+...... .+..+++|+.|++++|.+.......+. .+++|+.|+++++. +..-.. ..+ ..+++|+
T Consensus 91 ~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~i~~~~~~~~~-~l~~L~~L~L~~N~-l~~l~~-~~~~~~~~l~~L~ 166 (361)
T 2xot_A 91 RYLDLSSNHLHTLDEF-LFSDLQALEVLLLYNNHIVVVDRNAFE-DMAQLQKLYLSQNQ-ISRFPV-ELIKDGNKLPKLM 166 (361)
T ss_dssp CEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSC-CCSCCG-GGTC----CTTCC
T ss_pred CEEECCCCcCCcCCHH-HhCCCcCCCEEECCCCcccEECHHHhC-CcccCCEEECCCCc-CCeeCH-HHhcCcccCCcCC
Confidence 9999999887654332 334688999999999888765444443 37899999998743 322111 111 3578999
Q ss_pred EEeecCCccCChhhHHHHHhcCCC--CcEEEecCCCCCCh
Q 013172 162 NLTLSDCYFLSDMGLEAIATGCKE--LTHLEINGCHNIGT 199 (448)
Q Consensus 162 ~L~l~~~~~~~~~~~~~~~~~~~~--L~~L~l~~~~~~~~ 199 (448)
.|+++++. +.......+ ..++. ++.|++.++....+
T Consensus 167 ~L~L~~N~-l~~l~~~~~-~~l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 167 LLDLSSNK-LKKLPLTDL-QKLPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp EEECCSSC-CCCCCHHHH-HHSCHHHHTTEECCSSCEECC
T ss_pred EEECCCCC-CCccCHHHh-hhccHhhcceEEecCCCccCC
Confidence 99999986 444333332 34565 47899988554333
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.62 E-value=2.1e-08 Score=80.53 Aligned_cols=79 Identities=13% Similarity=0.093 Sum_probs=44.3
Q ss_pred CCccEEEeccCCccChhhHHHHHhcCCCCceeeccccccchhhHHHHhhcCCcccEEEeeccCCCcHHHHHHHhhccccc
Q 013172 56 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLE 135 (448)
Q Consensus 56 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 135 (448)
.+|++|++++|. ++.. ..+....++|+.|++++|.+... ..+..+++|++|++++|.+...... +...+++|+
T Consensus 19 ~~L~~L~l~~n~-l~~i--~~~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~ 91 (176)
T 1a9n_A 19 VRDRELDLRGYK-IPVI--ENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNRICRIGEG-LDQALPDLT 91 (176)
T ss_dssp TSCEEEECTTSC-CCSC--CCGGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSCCCEECSC-HHHHCTTCC
T ss_pred CCceEEEeeCCC-Cchh--HHhhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCCcccccCcc-hhhcCCCCC
Confidence 467788887764 4322 22333345778888877776543 2234467777777777766542211 112245555
Q ss_pred cccccc
Q 013172 136 LLALYS 141 (448)
Q Consensus 136 ~L~l~~ 141 (448)
+|++++
T Consensus 92 ~L~L~~ 97 (176)
T 1a9n_A 92 ELILTN 97 (176)
T ss_dssp EEECCS
T ss_pred EEECCC
Confidence 555554
No 128
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.61 E-value=7.4e-09 Score=86.47 Aligned_cols=152 Identities=18% Similarity=0.125 Sum_probs=103.2
Q ss_pred EEEeeeeccccccccccchhccccCCcceeeeccccccChhHHHHHHhhhCCCccEEEeccCCccChhhHHHHHhcCCCC
Q 013172 5 VLNFGFCKGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSL 84 (448)
Q Consensus 5 ~L~~s~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 84 (448)
+++++.|.+..++.. + .+.+++|+++++ .+........+..+ ++|++|+++++. ++...... ...+++|
T Consensus 15 ~l~~s~n~l~~iP~~----~---~~~~~~L~L~~N-~l~~~~~~~~~~~l-~~L~~L~L~~N~-i~~i~~~~-~~~l~~L 83 (220)
T 2v70_A 15 TVDCSNQKLNKIPEH----I---PQYTAELRLNNN-EFTVLEATGIFKKL-PQLRKINFSNNK-ITDIEEGA-FEGASGV 83 (220)
T ss_dssp EEECCSSCCSSCCSC----C---CTTCSEEECCSS-CCCEECCCCCGGGC-TTCCEEECCSSC-CCEECTTT-TTTCTTC
T ss_pred EeEeCCCCcccCccC----C---CCCCCEEEcCCC-cCCccCchhhhccC-CCCCEEECCCCc-CCEECHHH-hCCCCCC
Confidence 577777776666532 1 256789999988 44433211122334 799999999985 55443322 3568999
Q ss_pred ceeeccccccchhhHHHHhhcCCcccEEEeeccCCCcHHHHHHHhhccccccccccccccCChhHHHHHhhcCCCCCEEe
Q 013172 85 ETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLT 164 (448)
Q Consensus 85 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 164 (448)
++|++++|.+.......+ ..+++|++|++++|.+.......+. .+++|+.|+++++. +... .+..+..+++|+.|+
T Consensus 84 ~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~-l~~~-~~~~~~~l~~L~~L~ 159 (220)
T 2v70_A 84 NEILLTSNRLENVQHKMF-KGLESLKTLMLRSNRITCVGNDSFI-GLSSVRLLSLYDNQ-ITTV-APGAFDTLHSLSTLN 159 (220)
T ss_dssp CEEECCSSCCCCCCGGGG-TTCSSCCEEECTTSCCCCBCTTSST-TCTTCSEEECTTSC-CCCB-CTTTTTTCTTCCEEE
T ss_pred CEEECCCCccCccCHhHh-cCCcCCCEEECCCCcCCeECHhHcC-CCccCCEEECCCCc-CCEE-CHHHhcCCCCCCEEE
Confidence 999999998876544333 4689999999999988765444443 37999999998743 3322 123344689999999
Q ss_pred ecCCccC
Q 013172 165 LSDCYFL 171 (448)
Q Consensus 165 l~~~~~~ 171 (448)
++++...
T Consensus 160 L~~N~l~ 166 (220)
T 2v70_A 160 LLANPFN 166 (220)
T ss_dssp CCSCCEE
T ss_pred ecCcCCc
Confidence 9998743
No 129
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.61 E-value=4.3e-09 Score=87.22 Aligned_cols=82 Identities=17% Similarity=0.078 Sum_probs=35.6
Q ss_pred cCCceEeccCCcCcChHHHHHHHHhCCCCcEEEccccccccCchHhHhhhcCCCCcEEeccccCCcCchHHHhhccCCCc
Q 013172 236 KSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCSL 315 (448)
Q Consensus 236 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 315 (448)
++|++|+++++. +.... ...+..+++|++|++.++ .++... ......+++|++|+++++ .+.......+...++|
T Consensus 28 ~~l~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L 102 (208)
T 2o6s_A 28 AQTTYLDLETNS-LKSLP-NGVFDELTSLTQLYLGGN-KLQSLP-NGVFNKLTSLTYLNLSTN-QLQSLPNGVFDKLTQL 102 (208)
T ss_dssp TTCSEEECCSSC-CCCCC-TTTTTTCTTCSEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred CCCcEEEcCCCc-cCcCC-hhhhcccccCcEEECCCC-ccCccC-hhhcCCCCCcCEEECCCC-cCCccCHhHhcCccCC
Confidence 456666666642 22111 111233556666666653 233211 111234556666666553 2332222223334445
Q ss_pred cEEeeeC
Q 013172 316 QHLNVSG 322 (448)
Q Consensus 316 ~~L~l~~ 322 (448)
++|++++
T Consensus 103 ~~L~L~~ 109 (208)
T 2o6s_A 103 KELALNT 109 (208)
T ss_dssp CEEECCS
T ss_pred CEEEcCC
Confidence 5555554
No 130
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.60 E-value=7.9e-09 Score=86.91 Aligned_cols=132 Identities=18% Similarity=0.089 Sum_probs=91.0
Q ss_pred CCcceeeeccccccChhHHHHHHhhhCCCccEEEeccCCccChhhHHHHHhcCCCCceeeccccccchhhHHHHhhcCCc
Q 013172 29 NQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPL 108 (448)
Q Consensus 29 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 108 (448)
++|++|+++++ .+....... +..+ ++|++|++++|. ++.... .....+++|++|++++|.++.... ..+..+++
T Consensus 40 ~~L~~L~Ls~n-~i~~~~~~~-~~~l-~~L~~L~L~~N~-l~~i~~-~~~~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~ 113 (229)
T 3e6j_A 40 TNAQILYLHDN-QITKLEPGV-FDSL-INLKELYLGSNQ-LGALPV-GVFDSLTQLTVLDLGTNQLTVLPS-AVFDRLVH 113 (229)
T ss_dssp TTCSEEECCSS-CCCCCCTTT-TTTC-TTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTT
T ss_pred CCCCEEEcCCC-ccCccCHHH-hhCc-cCCcEEECCCCC-CCCcCh-hhcccCCCcCEEECCCCcCCccCh-hHhCcchh
Confidence 78999999988 444322211 2233 789999999985 543322 223568999999999998875433 23346899
Q ss_pred ccEEEeeccCCCcHHHHHHHhhccccccccccccccCChhHHHHHhhcCCCCCEEeecCCcc
Q 013172 109 LRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYF 170 (448)
Q Consensus 109 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 170 (448)
|++|++++|.+... ...+ ..+++|+.|++++. .+... ....+..+++|+.|++.+++.
T Consensus 114 L~~L~Ls~N~l~~l-p~~~-~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 114 LKELFMCCNKLTEL-PRGI-ERLTHLTHLALDQN-QLKSI-PHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp CCEEECCSSCCCSC-CTTG-GGCTTCSEEECCSS-CCCCC-CTTTTTTCTTCCEEECTTSCB
T ss_pred hCeEeccCCccccc-Cccc-ccCCCCCEEECCCC-cCCcc-CHHHHhCCCCCCEEEeeCCCc
Confidence 99999999988742 1222 45899999999874 34321 113345679999999999873
No 131
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.58 E-value=3.9e-08 Score=93.64 Aligned_cols=188 Identities=15% Similarity=0.068 Sum_probs=110.0
Q ss_pred CCcceeeeccccccChhHHHHHHhhhCCCccEEEeccCCccChhhHHHHHhcCCCCceeeccccccchhhHHHHhhcCCc
Q 013172 29 NQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPL 108 (448)
Q Consensus 29 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 108 (448)
.+++.|+++++ .+... ...+.++|++|++++|. ++... ..+++|++|++++|.++.. ..+. .+
T Consensus 59 ~~L~~L~Ls~n-~L~~l-----p~~l~~~L~~L~Ls~N~-l~~ip-----~~l~~L~~L~Ls~N~l~~i--p~l~---~~ 121 (571)
T 3cvr_A 59 NQFSELQLNRL-NLSSL-----PDNLPPQITVLEITQNA-LISLP-----ELPASLEYLDACDNRLSTL--PELP---AS 121 (571)
T ss_dssp TTCSEEECCSS-CCSCC-----CSCCCTTCSEEECCSSC-CSCCC-----CCCTTCCEEECCSSCCSCC--CCCC---TT
T ss_pred CCccEEEeCCC-CCCcc-----CHhHcCCCCEEECcCCC-Ccccc-----cccCCCCEEEccCCCCCCc--chhh---cC
Confidence 47888888877 34431 11123678888888875 44322 3468888888888877652 2221 27
Q ss_pred ccEEEeeccCCCcHHHHHHHhhccccccccccccccCChhHHHHHhhcCCCCCEEeecCCccCChhhHHHHHhcCCCCcE
Q 013172 109 LRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTH 188 (448)
Q Consensus 109 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 188 (448)
|++|++++|.++.... .+++|+.|+++++. +.. ++. .+++|+.|++++|. ++..+ .+ .++|+.
T Consensus 122 L~~L~Ls~N~l~~lp~-----~l~~L~~L~Ls~N~-l~~--lp~---~l~~L~~L~Ls~N~-L~~lp--~l---~~~L~~ 184 (571)
T 3cvr_A 122 LKHLDVDNNQLTMLPE-----LPALLEYINADNNQ-LTM--LPE---LPTSLEVLSVRNNQ-LTFLP--EL---PESLEA 184 (571)
T ss_dssp CCEEECCSSCCSCCCC-----CCTTCCEEECCSSC-CSC--CCC---CCTTCCEEECCSSC-CSCCC--CC---CTTCCE
T ss_pred CCEEECCCCcCCCCCC-----cCccccEEeCCCCc-cCc--CCC---cCCCcCEEECCCCC-CCCcc--hh---hCCCCE
Confidence 8888888887765211 46888888887643 322 121 45788888888886 33211 11 178888
Q ss_pred EEecCCCCCChhhH--HHHhhcCCCcceEecccccccCchhHHHHhccCcCCceEeccCCcCcChHHHH
Q 013172 189 LEINGCHNIGTMGL--ESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAIC 255 (448)
Q Consensus 189 L~l~~~~~~~~~~~--~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 255 (448)
|+++++ .+..... ..+....+.|+.|+++++ .+...+ .....+++|+.|+++++ .+......
T Consensus 185 L~Ls~N-~L~~lp~~~~~L~~~~~~L~~L~Ls~N-~l~~lp--~~l~~l~~L~~L~L~~N-~l~~~~p~ 248 (571)
T 3cvr_A 185 LDVSTN-LLESLPAVPVRNHHSEETEIFFRCREN-RITHIP--ENILSLDPTCTIILEDN-PLSSRIRE 248 (571)
T ss_dssp EECCSS-CCSSCCCCC--------CCEEEECCSS-CCCCCC--GGGGGSCTTEEEECCSS-SCCHHHHH
T ss_pred EECcCC-CCCchhhHHHhhhcccccceEEecCCC-cceecC--HHHhcCCCCCEEEeeCC-cCCCcCHH
Confidence 888874 3332111 011111123388888874 444322 22234788899998885 45544433
No 132
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.57 E-value=1.1e-08 Score=84.75 Aligned_cols=148 Identities=18% Similarity=0.099 Sum_probs=97.7
Q ss_pred cCCcceeeeccccccChhHHHHHHhhhCCCccEEEeccCCccChhhHHHHHhcCCCCceeeccccccchhhHHHHhhcCC
Q 013172 28 CNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCP 107 (448)
Q Consensus 28 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 107 (448)
.++|++|+++++ .+..... ..+..+ ++|++|+++++. ++.... .....+++|++|++++|.+..... ..+..++
T Consensus 27 ~~~l~~L~l~~n-~l~~~~~-~~~~~l-~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~ 100 (208)
T 2o6s_A 27 PAQTTYLDLETN-SLKSLPN-GVFDEL-TSLTQLYLGGNK-LQSLPN-GVFNKLTSLTYLNLSTNQLQSLPN-GVFDKLT 100 (208)
T ss_dssp CTTCSEEECCSS-CCCCCCT-TTTTTC-TTCSEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSSCCCCCCT-TTTTTCT
T ss_pred CCCCcEEEcCCC-ccCcCCh-hhhccc-ccCcEEECCCCc-cCccCh-hhcCCCCCcCEEECCCCcCCccCH-hHhcCcc
Confidence 368999999988 4443221 112333 789999999975 543322 223568999999999998874332 2334689
Q ss_pred cccEEEeeccCCCcHHHHHHHhhccccccccccccccCChhHHHHHhhcCCCCCEEeecCCccCChhhHHHHHhcCCCCc
Q 013172 108 LLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELT 187 (448)
Q Consensus 108 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 187 (448)
+|++|+++++.+.......+ ..+++|++|+++++. +... ....+..+++|+.|+++++... ..+++|+
T Consensus 101 ~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~l~~N~-l~~~-~~~~~~~l~~L~~L~l~~N~~~---------~~~~~l~ 168 (208)
T 2o6s_A 101 QLKELALNTNQLQSLPDGVF-DKLTQLKDLRLYQNQ-LKSV-PDGVFDRLTSLQYIWLHDNPWD---------CTCPGIR 168 (208)
T ss_dssp TCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSC-CSCC-CTTTTTTCTTCCEEECCSCCBC---------CCTTTTH
T ss_pred CCCEEEcCCCcCcccCHhHh-ccCCcCCEEECCCCc-ccee-CHHHhccCCCccEEEecCCCee---------cCCCCHH
Confidence 99999999988875433223 347999999998743 3321 1223456799999999998632 1355666
Q ss_pred EEEecC
Q 013172 188 HLEING 193 (448)
Q Consensus 188 ~L~l~~ 193 (448)
.|.+..
T Consensus 169 ~L~~~~ 174 (208)
T 2o6s_A 169 YLSEWI 174 (208)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665544
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.56 E-value=5e-08 Score=80.00 Aligned_cols=39 Identities=18% Similarity=0.264 Sum_probs=17.1
Q ss_pred CCCCceeeccccccchhhHHHHhhcCCcccEEEeeccCCCc
Q 013172 81 CKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTD 121 (448)
Q Consensus 81 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 121 (448)
+++|++|++++|.+.. +......+++|++|++++|.+..
T Consensus 69 l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~L~~N~l~~ 107 (198)
T 1ds9_A 69 MENLRILSLGRNLIKK--IENLDAVADTLEELWISYNQIAS 107 (198)
T ss_dssp HTTCCEEEEEEEEECS--CSSHHHHHHHCSEEEEEEEECCC
T ss_pred CCCCCEEECCCCCccc--ccchhhcCCcCCEEECcCCcCCc
Confidence 4555555555554432 11222223445555555444443
No 134
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.55 E-value=2.1e-08 Score=84.37 Aligned_cols=126 Identities=18% Similarity=0.089 Sum_probs=69.0
Q ss_pred cceeeeccccccChhHHHHHHhhhCCCccEEEeccCCccChhhHHHHHhcCCCCceeeccccccchhhHHHHhhcCCccc
Q 013172 31 LEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLR 110 (448)
Q Consensus 31 L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 110 (448)
.+.++.++. .+.... ....++|++|+++++. ++...... ...+++|++|++++|.+..... ..+..+++|+
T Consensus 21 ~~~v~c~~~-~l~~ip-----~~~~~~L~~L~Ls~n~-i~~~~~~~-~~~l~~L~~L~L~~N~l~~i~~-~~~~~l~~L~ 91 (229)
T 3e6j_A 21 GTTVDCRSK-RHASVP-----AGIPTNAQILYLHDNQ-ITKLEPGV-FDSLINLKELYLGSNQLGALPV-GVFDSLTQLT 91 (229)
T ss_dssp TTEEECTTS-CCSSCC-----SCCCTTCSEEECCSSC-CCCCCTTT-TTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCC
T ss_pred CCEeEccCC-CcCccC-----CCCCCCCCEEEcCCCc-cCccCHHH-hhCccCCcEEECCCCCCCCcCh-hhcccCCCcC
Confidence 556666654 222211 1223688999998875 44432222 2467889999998888754332 2334578888
Q ss_pred EEEeeccCCCcHHHHHHHhhccccccccccccccCChhHHHHHhhcCCCCCEEeecCCc
Q 013172 111 VLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCY 169 (448)
Q Consensus 111 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 169 (448)
.|++++|.+.......+ ..+++|+.|+++++. +. .++.....+++|+.|+++++.
T Consensus 92 ~L~Ls~N~l~~l~~~~~-~~l~~L~~L~Ls~N~-l~--~lp~~~~~l~~L~~L~L~~N~ 146 (229)
T 3e6j_A 92 VLDLGTNQLTVLPSAVF-DRLVHLKELFMCCNK-LT--ELPRGIERLTHLTHLALDQNQ 146 (229)
T ss_dssp EEECCSSCCCCCCTTTT-TTCTTCCEEECCSSC-CC--SCCTTGGGCTTCSEEECCSSC
T ss_pred EEECCCCcCCccChhHh-CcchhhCeEeccCCc-cc--ccCcccccCCCCCEEECCCCc
Confidence 88888887764322112 235566666665432 22 111112344555555555543
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.50 E-value=2.7e-08 Score=81.60 Aligned_cols=36 Identities=19% Similarity=0.033 Sum_probs=18.0
Q ss_pred HhCCCCcEEEccccccccCchHhHhhhcCCCCcEEecccc
Q 013172 259 EGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFC 298 (448)
Q Consensus 259 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 298 (448)
..+++|+.|+++++. ++.. + ....+++|++|+++++
T Consensus 45 ~~l~~L~~L~ls~n~-l~~l--~-~~~~l~~L~~L~l~~n 80 (198)
T 1ds9_A 45 STLKACKHLALSTNN-IEKI--S-SLSGMENLRILSLGRN 80 (198)
T ss_dssp HHTTTCSEEECSEEE-ESCC--C-CHHHHTTCCEEEEEEE
T ss_pred hcCCCCCEEECCCCC-Cccc--c-ccccCCCCCEEECCCC
Confidence 336666666666542 3321 1 2234556666666553
No 136
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.50 E-value=8.8e-09 Score=98.51 Aligned_cols=124 Identities=19% Similarity=0.173 Sum_probs=71.4
Q ss_pred ccccccccccccCChhHHHHHhhcCCCCCEEeecCCccCChhhHHHHHhcCCCCcEEEecCCCCCChhhHHHHhhcCCCc
Q 013172 133 SLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNL 212 (448)
Q Consensus 133 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 212 (448)
.|+.|+++++. +.. ++. +..+++|+.|+++++. +.. ++.....+++|+.|+++++ .+... +.+ ..+++|
T Consensus 442 ~L~~L~Ls~n~-l~~--lp~-~~~l~~L~~L~Ls~N~-l~~--lp~~~~~l~~L~~L~Ls~N-~l~~l--p~l-~~l~~L 510 (567)
T 1dce_A 442 DVRVLHLAHKD-LTV--LCH-LEQLLLVTHLDLSHNR-LRA--LPPALAALRCLEVLQASDN-ALENV--DGV-ANLPRL 510 (567)
T ss_dssp TCSEEECTTSC-CSS--CCC-GGGGTTCCEEECCSSC-CCC--CCGGGGGCTTCCEEECCSS-CCCCC--GGG-TTCSSC
T ss_pred CceEEEecCCC-CCC--CcC-ccccccCcEeecCccc-ccc--cchhhhcCCCCCEEECCCC-CCCCC--ccc-CCCCCC
Confidence 56777776642 322 223 4456788888888775 332 2223446788888888774 34432 223 335788
Q ss_pred ceEecccccccCchhHHHHhccCcCCceEeccCCcCcChH--HHHHHHHhCCCCcEEEc
Q 013172 213 TELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDD--AICSIAEGCQNLKKLHI 269 (448)
Q Consensus 213 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~~L~~L~l 269 (448)
+.|+++++ .+........+..+++|+.|+++++. +... ....+...+|+|+.|++
T Consensus 511 ~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 511 QELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEEC
T ss_pred cEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccCC
Confidence 88888773 44433212334567888888888753 3211 12234455888888753
No 137
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.44 E-value=1.9e-08 Score=81.99 Aligned_cols=109 Identities=17% Similarity=0.137 Sum_probs=51.0
Q ss_pred CccEEEeccCCccChhhHHHHHhcCCCCceeeccccccchhhHHHHhhcCCcccEEEeeccCCCcHHHHHHHhhcccccc
Q 013172 57 SLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLEL 136 (448)
Q Consensus 57 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 136 (448)
++++|+++++. ++......+...+++|++|++++|.++......+ ..+++|++|++++|.+.......+. .+++|++
T Consensus 30 ~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~ 106 (192)
T 1w8a_A 30 HTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAF-EGASHIQELQLGENKIKEISNKMFL-GLHQLKT 106 (192)
T ss_dssp TCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTT-TTCTTCCEEECCSCCCCEECSSSST-TCTTCCE
T ss_pred CCCEEECCCCc-CCccCCccccccCCCCCEEECCCCCCCCcCHhHc-CCcccCCEEECCCCcCCccCHHHhc-CCCCCCE
Confidence 45555555543 3222211112345556666665555543322222 2355566666655555433222222 2455666
Q ss_pred ccccccccCChhHHHHHhhcCCCCCEEeecCCcc
Q 013172 137 LALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYF 170 (448)
Q Consensus 137 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 170 (448)
|++++.. +... .+..+..+++|+.|+++++..
T Consensus 107 L~L~~N~-l~~~-~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 107 LNLYDNQ-ISCV-MPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp EECCSSC-CCEE-CTTSSTTCTTCCEEECTTCCB
T ss_pred EECCCCc-CCee-CHHHhhcCCCCCEEEeCCCCc
Confidence 6665432 2211 111223467788888887763
No 138
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.40 E-value=1.1e-07 Score=77.39 Aligned_cols=108 Identities=17% Similarity=0.084 Sum_probs=53.2
Q ss_pred CCccEEEeccCCccChhhHHHHHhcCCCCceeeccccccchhhHHHHhhcCCcccEEEeeccCCCcHHHHHHHhhccccc
Q 013172 56 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLE 135 (448)
Q Consensus 56 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 135 (448)
+++++|+++++. ++... .....+++|++|++++|.++......+ ..+++|++|++++|.+.......+. .+++|+
T Consensus 31 ~~l~~L~L~~n~-i~~ip--~~~~~l~~L~~L~Ls~N~i~~i~~~~f-~~l~~L~~L~Ls~N~l~~i~~~~f~-~l~~L~ 105 (193)
T 2wfh_A 31 RDVTELYLDGNQ-FTLVP--KELSNYKHLTLIDLSNNRISTLSNQSF-SNMTQLLTLILSYNRLRCIPPRTFD-GLKSLR 105 (193)
T ss_dssp TTCCEEECCSSC-CCSCC--GGGGGCTTCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSCCCBCCTTTTT-TCTTCC
T ss_pred CCCCEEECCCCc-CchhH--HHhhcccCCCEEECCCCcCCEeCHhHc-cCCCCCCEEECCCCccCEeCHHHhC-CCCCCC
Confidence 455666665543 33221 122445666666666665544322222 2355666666666555543322222 256666
Q ss_pred cccccccccCChhHHHHHhhcCCCCCEEeecCCcc
Q 013172 136 LLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYF 170 (448)
Q Consensus 136 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 170 (448)
.|++++.. +..- ....+..+++|+.|++++++.
T Consensus 106 ~L~L~~N~-l~~~-~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 106 LLSLHGND-ISVV-PEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp EEECCSSC-CCBC-CTTTTTTCTTCCEEECCSSCE
T ss_pred EEECCCCC-CCee-ChhhhhcCccccEEEeCCCCe
Confidence 66665522 2211 111233567888888887763
No 139
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.39 E-value=1.4e-06 Score=69.69 Aligned_cols=123 Identities=17% Similarity=0.175 Sum_probs=81.5
Q ss_pred HHHHHHhhhCCCccEEEeccCCccChhhHHHHHhcC---CCCceeeccccccchhhHHHHh---hcCCcccEEEeeccCC
Q 013172 46 GLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHC---KSLETLSLDSEFIHNKGVHAVA---QGCPLLRVLKLQCINV 119 (448)
Q Consensus 46 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~ 119 (448)
.+..+...- +.|++|+++++..+.+.+...++..+ ..|++|+|++|.+.+.+...+. +.-+.|++|+|++|.+
T Consensus 32 ~l~~ll~~n-~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~I 110 (197)
T 1pgv_A 32 CINRLREDD-TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFL 110 (197)
T ss_dssp HHHHHHTTC-SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBC
T ss_pred HHHHHHhcC-CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcC
Confidence 344444333 67888888875457777766665433 5688888888888877655443 3346788888888888
Q ss_pred CcHHHHHHHhhc---ccccccccccc-c-cCChhH---HHHHhhcCCCCCEEeecCCc
Q 013172 120 TDEALVAVGNQC---LSLELLALYSF-Q-QFTDKG---LHAVGKGCKKLKNLTLSDCY 169 (448)
Q Consensus 120 ~~~~~~~~~~~~---~~L~~L~l~~~-~-~~~~~~---~~~~~~~~~~L~~L~l~~~~ 169 (448)
++.+...+++.+ +.|++|+++++ . .+.+.+ +......-+.|+.|+++.+.
T Consensus 111 g~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 111 TPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp CHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred CHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 888877776654 56888888753 2 455544 33444456788888887653
No 140
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.33 E-value=4.6e-06 Score=66.75 Aligned_cols=119 Identities=15% Similarity=0.204 Sum_probs=62.1
Q ss_pred HhHhhhcCCCCcEEeccccCCcCchHHHhhcc----CCCccEEeeeCccccChHHHHHH---HhhCCCCCEEeccCcCCC
Q 013172 280 IVAVGEHCNSLTELSLRFCDRVGDEALISIGQ----GCSLQHLNVSGCHQIGDAGIMAI---AKGCPELNYLDVSVLQNL 352 (448)
Q Consensus 280 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~----~~~L~~L~l~~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~l 352 (448)
+..+...-+.|++|++++++.+.+.+...++. .+.|+.|+|+++ .+++.+...+ ++.-+.|+.|+|++| .+
T Consensus 33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N-~I 110 (197)
T 1pgv_A 33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESN-FL 110 (197)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSS-BC
T ss_pred HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCC-cC
Confidence 33344445667777776544566655444332 345666666663 5555553332 234456666666666 56
Q ss_pred CHHHHHHHhc---CCCCCcEEeccCCC--CCChHHHHHH---HHcCccCceEeccC
Q 013172 353 GDQAMVELGK---GCPLLKDVVLSHCR--QITDVGLSHL---VKNCRMLESCHMVY 400 (448)
Q Consensus 353 ~~~~~~~~~~---~~~~L~~L~l~~c~--~l~~~~~~~~---~~~~~~L~~L~l~~ 400 (448)
++.+...++. .-+.|++|+++++. .+.+.+...+ ...-+.|+.|+++.
T Consensus 111 g~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~ 166 (197)
T 1pgv_A 111 TPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISF 166 (197)
T ss_dssp CHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred CHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccC
Confidence 6666655543 23456666665431 3444433222 22344566666643
No 141
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.33 E-value=2.8e-08 Score=80.99 Aligned_cols=58 Identities=17% Similarity=0.083 Sum_probs=25.2
Q ss_pred CCceeeccccccchhhHHHHhhcCCcccEEEeeccCCCcHHHHHHHhhccccccccccc
Q 013172 83 SLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYS 141 (448)
Q Consensus 83 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 141 (448)
++++|++++|.+........+..+++|++|++++|.+.......+. .+++|++|++++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFE-GASHIQELQLGE 87 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTT-TCTTCCEEECCS
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcC-CcccCCEEECCC
Confidence 4555555555443322222223345555555555544432222222 245555555544
No 142
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.26 E-value=1.3e-07 Score=76.96 Aligned_cols=57 Identities=14% Similarity=0.082 Sum_probs=25.2
Q ss_pred CCCceeeccccccchhhHHHHhhcCCcccEEEeeccCCCcHHHHHHHhhccccccccccc
Q 013172 82 KSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYS 141 (448)
Q Consensus 82 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 141 (448)
++|++|++++|.++... ..+..+++|++|++++|.+.......+. .+++|++|++++
T Consensus 31 ~~l~~L~L~~n~i~~ip--~~~~~l~~L~~L~Ls~N~i~~i~~~~f~-~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVP--KELSNYKHLTLIDLSNNRISTLSNQSFS-NMTQLLTLILSY 87 (193)
T ss_dssp TTCCEEECCSSCCCSCC--GGGGGCTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCS
T ss_pred CCCCEEECCCCcCchhH--HHhhcccCCCEEECCCCcCCEeCHhHcc-CCCCCCEEECCC
Confidence 34555555555544221 2223345555555555554432222222 245555555554
No 143
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.18 E-value=3.5e-07 Score=73.44 Aligned_cols=108 Identities=18% Similarity=0.087 Sum_probs=50.5
Q ss_pred CCccEEEeccCCccChhhHHHHHhcCCCCceeeccccccchhhHHHHhhcCCcccEEEeeccCCCcHHHHHHHhhccccc
Q 013172 56 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLE 135 (448)
Q Consensus 56 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 135 (448)
++|++|+++++. ++..... ....+++|++|++++|.++..... .+..+++|++|++++|.++......+ ..+++|+
T Consensus 28 ~~l~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~-~~l~~L~ 103 (177)
T 2o6r_A 28 SSATRLELESNK-LQSLPHG-VFDKLTQLTKLSLSQNQIQSLPDG-VFDKLTKLTILYLHENKLQSLPNGVF-DKLTQLK 103 (177)
T ss_dssp TTCSEEECCSSC-CCCCCTT-TTTTCTTCSEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCTTTT-TTCTTCC
T ss_pred CCCcEEEeCCCc-ccEeCHH-HhcCcccccEEECCCCcceEeChh-HccCCCccCEEECCCCCccccCHHHh-hCCcccC
Confidence 455555555543 3221111 123445566666665555432211 12235566666666555543222111 2255666
Q ss_pred cccccccccCChhHHHHHhhcCCCCCEEeecCCc
Q 013172 136 LLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCY 169 (448)
Q Consensus 136 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 169 (448)
+|+++++ .+.. .....+..+++|+.|+++++.
T Consensus 104 ~L~l~~N-~l~~-~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 104 ELALDTN-QLKS-VPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp EEECCSS-CCSC-CCTTTTTTCTTCCEEECCSSC
T ss_pred EEECcCC-cceE-eCHHHhcCCcccCEEEecCCC
Confidence 6666543 2221 111222346778888887776
No 144
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.10 E-value=1.2e-06 Score=70.24 Aligned_cols=125 Identities=14% Similarity=0.026 Sum_probs=81.8
Q ss_pred EEEeeeeccccccccccchhccccCCcceeeeccccccChhHHHHHHhhhCCCccEEEeccCCccChhhHHHHHhcCCCC
Q 013172 5 VLNFGFCKGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSL 84 (448)
Q Consensus 5 ~L~~s~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 84 (448)
.++++.|.+..+... ..++|++|+++++ .+...... .+..+ ++|++|+++++. ++..... ....+++|
T Consensus 11 ~l~~~~~~l~~~p~~-------~~~~l~~L~l~~n-~l~~~~~~-~~~~l-~~L~~L~l~~n~-l~~~~~~-~~~~l~~L 78 (177)
T 2o6r_A 11 EIRCNSKGLTSVPTG-------IPSSATRLELESN-KLQSLPHG-VFDKL-TQLTKLSLSQNQ-IQSLPDG-VFDKLTKL 78 (177)
T ss_dssp EEECCSSCCSSCCTT-------CCTTCSEEECCSS-CCCCCCTT-TTTTC-TTCSEEECCSSC-CCCCCTT-TTTTCTTC
T ss_pred EEEecCCCCccCCCC-------CCCCCcEEEeCCC-cccEeCHH-HhcCc-ccccEEECCCCc-ceEeChh-HccCCCcc
Confidence 456666555544421 2368999999987 34432211 12233 789999999975 5433222 23468999
Q ss_pred ceeeccccccchhhHHHHhhcCCcccEEEeeccCCCcHHHHHHHhhccccccccccccc
Q 013172 85 ETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQ 143 (448)
Q Consensus 85 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 143 (448)
++|++++|.++..... .+..+++|++|++++|.+..... .....+++|++|++++..
T Consensus 79 ~~L~l~~N~l~~~~~~-~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 79 TILYLHENKLQSLPNG-VFDKLTQLKELALDTNQLKSVPD-GIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSC
T ss_pred CEEECCCCCccccCHH-HhhCCcccCEEECcCCcceEeCH-HHhcCCcccCEEEecCCC
Confidence 9999999988754332 33458899999999888874333 223447899999998754
No 145
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.93 E-value=1.5e-06 Score=85.76 Aligned_cols=83 Identities=19% Similarity=0.176 Sum_probs=35.7
Q ss_pred cCCCCceeeccccccchhhHHHHhhcCCcccEEEeeccCCCcHHHHHHHhhccccccccccccccCChhHHHHHhhcCCC
Q 013172 80 HCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKK 159 (448)
Q Consensus 80 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 159 (448)
.+++|++|+|++|.++. +...+..+++|+.|+|++|.+... +..+ ..+++|++|+++++. +. .++..+..+++
T Consensus 245 ~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~Ls~N~l~~l-p~~~-~~l~~L~~L~L~~N~-l~--~lp~~~~~l~~ 317 (727)
T 4b8c_D 245 KYDFLTRLYLNGNSLTE--LPAEIKNLSNLRVLDLSHNRLTSL-PAEL-GSCFQLKYFYFFDNM-VT--TLPWEFGNLCN 317 (727)
T ss_dssp GCCSCSCCBCTTSCCSC--CCGGGGGGTTCCEEECTTSCCSSC-CSSG-GGGTTCSEEECCSSC-CC--CCCSSTTSCTT
T ss_pred CCCCCCEEEeeCCcCcc--cChhhhCCCCCCEEeCcCCcCCcc-Chhh-cCCCCCCEEECCCCC-CC--ccChhhhcCCC
Confidence 34555555555555541 112223355555555555554421 1112 224555555555431 21 11111234455
Q ss_pred CCEEeecCCc
Q 013172 160 LKNLTLSDCY 169 (448)
Q Consensus 160 L~~L~l~~~~ 169 (448)
|+.|+++++.
T Consensus 318 L~~L~L~~N~ 327 (727)
T 4b8c_D 318 LQFLGVEGNP 327 (727)
T ss_dssp CCCEECTTSC
T ss_pred ccEEeCCCCc
Confidence 5555555554
No 146
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.92 E-value=3.9e-06 Score=66.63 Aligned_cols=85 Identities=15% Similarity=0.007 Sum_probs=38.1
Q ss_pred CCcceeeeccccccChhHHHHHHhhhCCCccEEEeccCCccChhhHHHHHhcCCCCceeeccccccchhhHHHHhhcCCc
Q 013172 29 NQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPL 108 (448)
Q Consensus 29 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 108 (448)
++|+.|+++++ .+.......+ ..+ ++|++|++++|. ++..... ....+++|++|++++|.+...... .+..+++
T Consensus 30 ~~l~~L~L~~N-~i~~~~~~~~-~~l-~~L~~L~Ls~N~-l~~l~~~-~f~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~ 103 (170)
T 3g39_A 30 TTTQVLYLYDN-QITKLEPGVF-DRL-TQLTRLDLDNNQ-LTVLPAG-VFDKLTQLTQLSLNDNQLKSIPRG-AFDNLKS 103 (170)
T ss_dssp TTCSEEECCSS-CCCCCCTTTT-TTC-TTCSEEECCSSC-CCCCCTT-TTTTCTTCCEEECCSSCCCCCCTT-TTTTCTT
T ss_pred CCCcEEEcCCC-cCCccChhhh-cCc-ccCCEEECCCCC-cCccChh-hccCCCCCCEEECCCCccCEeCHH-HhcCCCC
Confidence 45666666655 2332111111 112 456666666553 3322211 123455666666666555432221 2233555
Q ss_pred ccEEEeeccCC
Q 013172 109 LRVLKLQCINV 119 (448)
Q Consensus 109 L~~L~l~~~~~ 119 (448)
|++|++++|.+
T Consensus 104 L~~L~L~~N~~ 114 (170)
T 3g39_A 104 LTHIWLLNNPW 114 (170)
T ss_dssp CCEEECCSSCB
T ss_pred CCEEEeCCCCC
Confidence 66666655544
No 147
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.89 E-value=5.4e-06 Score=66.04 Aligned_cols=61 Identities=15% Similarity=0.087 Sum_probs=27.1
Q ss_pred CCccEEEeccCCccChhhHHHHHhcCCCCceeeccccccchhhHHHHhhcCCcccEEEeeccCC
Q 013172 56 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINV 119 (448)
Q Consensus 56 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 119 (448)
++|++|++++|. ++.... .+...+++|++|++++|.+..... ..+..+++|++|++++|.+
T Consensus 57 ~~L~~L~Ls~N~-l~~i~~-~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 57 VNLQQLYFNSNK-LTAIPT-GVFDKLTQLTQLDLNDNHLKSIPR-GAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp TTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCSEEECCSSCB
T ss_pred cCCCEEECCCCC-CCccCh-hHhCCcchhhEEECCCCccceeCH-HHhccccCCCEEEeCCCCc
Confidence 455555555543 332211 111334555555555555543221 1122355555555555544
No 148
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.79 E-value=3.8e-06 Score=82.99 Aligned_cols=106 Identities=14% Similarity=0.090 Sum_probs=63.7
Q ss_pred cccCCcceeeeccccccChhHHHHHHhhhCCCccEEEeccCCccChhhHHHHHhcCCCCceeeccccccchhhHHHHhhc
Q 013172 26 KVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQG 105 (448)
Q Consensus 26 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 105 (448)
..++.|+.|+|+++. +..... .+. .+ ++|++|+|++|. ++.. +.. +..+++|++|+|++|.++. +...+..
T Consensus 221 ~~l~~L~~L~Ls~n~-l~~l~~-~~~-~l-~~L~~L~Ls~N~-l~~l-p~~-~~~l~~L~~L~Ls~N~l~~--lp~~~~~ 291 (727)
T 4b8c_D 221 YDDQLWHALDLSNLQ-IFNISA-NIF-KY-DFLTRLYLNGNS-LTEL-PAE-IKNLSNLRVLDLSHNRLTS--LPAELGS 291 (727)
T ss_dssp -CCCCCCEEECTTSC-CSCCCG-GGG-GC-CSCSCCBCTTSC-CSCC-CGG-GGGGTTCCEEECTTSCCSS--CCSSGGG
T ss_pred ccCCCCcEEECCCCC-CCCCCh-hhc-CC-CCCCEEEeeCCc-Cccc-Chh-hhCCCCCCEEeCcCCcCCc--cChhhcC
Confidence 445778888888773 332110 111 23 678888888874 4421 122 3567888888888887762 2322345
Q ss_pred CCcccEEEeeccCCCcHHHHHHHhhcccccccccccc
Q 013172 106 CPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSF 142 (448)
Q Consensus 106 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 142 (448)
+++|++|++++|.++.. +..+ ..+++|+.|+++++
T Consensus 292 l~~L~~L~L~~N~l~~l-p~~~-~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVTTL-PWEF-GNLCNLQFLGVEGN 326 (727)
T ss_dssp GTTCSEEECCSSCCCCC-CSST-TSCTTCCCEECTTS
T ss_pred CCCCCEEECCCCCCCcc-Chhh-hcCCCccEEeCCCC
Confidence 77888888887777532 2223 33778888888764
No 149
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.75 E-value=2.2e-06 Score=68.04 Aligned_cols=81 Identities=16% Similarity=0.063 Sum_probs=44.4
Q ss_pred cceeeeccccccChhHHHHHHhhhCCCccEEEeccCCccChhhHHHHHhcCCCCceeeccccccchhhHHHHhhcCCccc
Q 013172 31 LEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLR 110 (448)
Q Consensus 31 L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 110 (448)
.+.++++++ .+.... ....+++++|+++++. ++...... ...+++|++|++++|.+..... ..+..+++|+
T Consensus 11 ~~~l~~s~n-~l~~ip-----~~~~~~l~~L~L~~N~-i~~~~~~~-~~~l~~L~~L~Ls~N~l~~l~~-~~f~~l~~L~ 81 (170)
T 3g39_A 11 GTTVDCSGK-SLASVP-----TGIPTTTQVLYLYDNQ-ITKLEPGV-FDRLTQLTRLDLDNNQLTVLPA-GVFDKLTQLT 81 (170)
T ss_dssp TTEEECTTS-CCSSCC-----SCCCTTCSEEECCSSC-CCCCCTTT-TTTCTTCSEEECCSSCCCCCCT-TTTTTCTTCC
T ss_pred CCEEEeCCC-CcCccC-----ccCCCCCcEEEcCCCc-CCccChhh-hcCcccCCEEECCCCCcCccCh-hhccCCCCCC
Confidence 456666665 233211 1122567777777764 44332222 2356777777777777654322 2223466777
Q ss_pred EEEeeccCCC
Q 013172 111 VLKLQCINVT 120 (448)
Q Consensus 111 ~L~l~~~~~~ 120 (448)
+|++++|.+.
T Consensus 82 ~L~L~~N~l~ 91 (170)
T 3g39_A 82 QLSLNDNQLK 91 (170)
T ss_dssp EEECCSSCCC
T ss_pred EEECCCCccC
Confidence 7777766654
No 150
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.69 E-value=5.1e-05 Score=64.29 Aligned_cols=84 Identities=23% Similarity=0.246 Sum_probs=39.3
Q ss_pred hcCCCCceeeccccccchh-hHHHHhhcCCcccEEEeeccCCCcH-HHHHHHhhccccccccccccccCCh------hHH
Q 013172 79 SHCKSLETLSLDSEFIHNK-GVHAVAQGCPLLRVLKLQCINVTDE-ALVAVGNQCLSLELLALYSFQQFTD------KGL 150 (448)
Q Consensus 79 ~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~------~~~ 150 (448)
..+|+|++|+|++|.+... ++......+++|+.|+|++|.+... .+..+.. + +|++|.+++.+ +.. ...
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~-l-~L~~L~L~~Np-l~~~~~~~~~y~ 243 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKG-L-KLEELWLDGNS-LCDTFRDQSTYI 243 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTT-S-CCSEEECTTST-TGGGCSSHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhccc-C-CcceEEccCCc-CccccCcchhHH
Confidence 4456666666666555432 1223333455666666665555543 1111111 1 55666665532 221 112
Q ss_pred HHHhhcCCCCCEEee
Q 013172 151 HAVGKGCKKLKNLTL 165 (448)
Q Consensus 151 ~~~~~~~~~L~~L~l 165 (448)
..+...+|+|+.|+-
T Consensus 244 ~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 244 SAIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHHCTTCCEESS
T ss_pred HHHHHHCcccCeECC
Confidence 334455677766653
No 151
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.66 E-value=3.6e-06 Score=67.07 Aligned_cols=62 Identities=18% Similarity=0.115 Sum_probs=35.6
Q ss_pred CCccEEEeccCCccChhhHHHHHhcCCCCceeeccccccchhhHHHHhhcCCcccEEEeeccCCC
Q 013172 56 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVT 120 (448)
Q Consensus 56 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 120 (448)
++|++|+++++. ++...... ...+++|++|++++|.++.... ..+..+++|++|++++|.+.
T Consensus 33 ~~L~~L~Ls~N~-l~~~~~~~-~~~l~~L~~L~Ls~N~l~~i~~-~~~~~l~~L~~L~L~~N~l~ 94 (174)
T 2r9u_A 33 TDKQRLWLNNNQ-ITKLEPGV-FDHLVNLQQLYFNSNKLTAIPT-GVFDKLTQLTQLDLNDNHLK 94 (174)
T ss_dssp TTCSEEECCSSC-CCCCCTTT-TTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCC
T ss_pred CCCcEEEeCCCC-ccccCHHH-hcCCcCCCEEECCCCCCCccCh-hHhCCcchhhEEECCCCccc
Confidence 567777777764 43322222 2456777777777776654322 22234667777777666554
No 152
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.55 E-value=7.1e-06 Score=74.84 Aligned_cols=11 Identities=36% Similarity=0.519 Sum_probs=6.1
Q ss_pred CCCcceEeccc
Q 013172 209 CRNLTELALLY 219 (448)
Q Consensus 209 ~~~L~~L~l~~ 219 (448)
|++|+.+++..
T Consensus 179 c~~L~~l~l~~ 189 (401)
T 4fdw_A 179 CYNLKKADLSK 189 (401)
T ss_dssp CTTCCEEECTT
T ss_pred cccCCeeecCC
Confidence 45566666543
No 153
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.54 E-value=1e-05 Score=74.04 Aligned_cols=217 Identities=16% Similarity=0.195 Sum_probs=92.6
Q ss_pred cCCCCcEEEecCCCCCChhhHHHHhhcCCCcceEecccccccCchhHHHHhccCcCCceEeccCCcCcChHHHHHHHHhC
Q 013172 182 GCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGC 261 (448)
Q Consensus 182 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 261 (448)
.|++|+.+.+.+. +...+- .....|++|+.+.+... +....- ....+++.|+.+.+......- ......+
T Consensus 160 ~c~~L~~i~l~~~--~~~I~~-~~F~~c~~L~~i~l~~~--~~~I~~-~~F~~~~~L~~i~~~~~~~~i----~~~~~~~ 229 (394)
T 4fs7_A 160 TCESLEYVSLPDS--METLHN-GLFSGCGKLKSIKLPRN--LKIIRD-YCFAECILLENMEFPNSLYYL----GDFALSK 229 (394)
T ss_dssp TCTTCCEEECCTT--CCEECT-TTTTTCTTCCBCCCCTT--CCEECT-TTTTTCTTCCBCCCCTTCCEE----CTTTTTT
T ss_pred ccCCCcEEecCCc--cceecc-ccccCCCCceEEEcCCC--ceEeCc-hhhccccccceeecCCCceEe----ehhhccc
Confidence 5667777776531 111111 12233566777666431 111111 112345666666554321110 0011224
Q ss_pred CCCcEEEccccccccCchHhHhhhcCCCCcEEeccccCCcCchHHHhhccCCCccEEeeeCccccChHHHHHHHhhCCCC
Q 013172 262 QNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPEL 341 (448)
Q Consensus 262 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 341 (448)
.+|+.+.+... +...+- .....+..|+.+.+... ........+.....++.+..... .+.+. ....+.+|
T Consensus 230 ~~l~~i~ip~~--~~~i~~-~~f~~~~~l~~~~~~~~--~~~i~~~~F~~~~~l~~~~~~~~-~i~~~----~F~~~~~L 299 (394)
T 4fs7_A 230 TGVKNIIIPDS--FTELGK-SVFYGCTDLESISIQNN--KLRIGGSLFYNCSGLKKVIYGSV-IVPEK----TFYGCSSL 299 (394)
T ss_dssp CCCCEEEECTT--CCEECS-STTTTCSSCCEEEECCT--TCEECSCTTTTCTTCCEEEECSS-EECTT----TTTTCTTC
T ss_pred CCCceEEECCC--ceeccc-ccccccccceeEEcCCC--cceeeccccccccccceeccCce-eeccc----cccccccc
Confidence 56666666532 111111 11234666666666442 11122222333334555554431 22221 12345666
Q ss_pred CEEeccCcCCCCHHHHHHHhcCCCCCcEEeccCCCCCChHHHHHHHHcCccCceEeccCCCCCCHHHHHHHHhcCccceE
Q 013172 342 NYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSHCRQITDVGLSHLVKNCRMLESCHMVYCPGITAAGVATVVSGCANIKK 421 (448)
Q Consensus 342 ~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~ 421 (448)
+.+.+... +...+-. .+.+|++|+.+++.. .++..+-..+ ..|.+|+.+.+..+ ++..+- ..+.+|++|+.
T Consensus 300 ~~i~l~~~--i~~I~~~-aF~~c~~L~~i~lp~--~v~~I~~~aF-~~c~~L~~i~lp~~--l~~I~~-~aF~~C~~L~~ 370 (394)
T 4fs7_A 300 TEVKLLDS--VKFIGEE-AFESCTSLVSIDLPY--LVEEIGKRSF-RGCTSLSNINFPLS--LRKIGA-NAFQGCINLKK 370 (394)
T ss_dssp CEEEECTT--CCEECTT-TTTTCTTCCEECCCT--TCCEECTTTT-TTCTTCCEECCCTT--CCEECT-TTBTTCTTCCE
T ss_pred cccccccc--cceechh-hhcCCCCCCEEEeCC--cccEEhHHhc-cCCCCCCEEEECcc--ccEehH-HHhhCCCCCCE
Confidence 66666532 1111111 123466777776643 2433332222 35666777766432 221110 22456677777
Q ss_pred EEEeee
Q 013172 422 VMVEKW 427 (448)
Q Consensus 422 L~l~~~ 427 (448)
+.+.++
T Consensus 371 i~lp~~ 376 (394)
T 4fs7_A 371 VELPKR 376 (394)
T ss_dssp EEEEGG
T ss_pred EEECCC
Confidence 766543
No 154
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.22 E-value=5.1e-05 Score=69.15 Aligned_cols=10 Identities=30% Similarity=0.587 Sum_probs=4.8
Q ss_pred CcCCceEecc
Q 013172 235 CKSLQALHLV 244 (448)
Q Consensus 235 ~~~L~~L~l~ 244 (448)
|++|+.+++.
T Consensus 179 c~~L~~l~l~ 188 (401)
T 4fdw_A 179 CYNLKKADLS 188 (401)
T ss_dssp CTTCCEEECT
T ss_pred cccCCeeecC
Confidence 4444444444
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.20 E-value=0.0022 Score=54.35 Aligned_cols=84 Identities=24% Similarity=0.238 Sum_probs=45.7
Q ss_pred HhCCCCcEEEccccccccC-chHhHhhhcCCCCcEEeccccCCcCch-HHHhhccCCCccEEeeeCccccCh------HH
Q 013172 259 EGCQNLKKLHIRRCYKIGN-NGIVAVGEHCNSLTELSLRFCDRVGDE-ALISIGQGCSLQHLNVSGCHQIGD------AG 330 (448)
Q Consensus 259 ~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~------~~ 330 (448)
..+++|+.|+++++. ++. .++......+++|+.|+++++ .+.+. .+..+..+ +|+.|++.+++ +.. .-
T Consensus 167 ~~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~~l~~l-~L~~L~L~~Np-l~~~~~~~~~y 242 (267)
T 3rw6_A 167 ENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGL-KLEELWLDGNS-LCDTFRDQSTY 242 (267)
T ss_dssp HHCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGGGGGGTTS-CCSEEECTTST-TGGGCSSHHHH
T ss_pred hhCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCCC-ccCCchhhhhcccC-CcceEEccCCc-CccccCcchhH
Confidence 457778888877753 332 233344456788888888774 34432 23333222 67777776643 221 11
Q ss_pred HHHHHhhCCCCCEEec
Q 013172 331 IMAIAKGCPELNYLDV 346 (448)
Q Consensus 331 ~~~~~~~~~~L~~L~l 346 (448)
...+...+|+|+.|+=
T Consensus 243 ~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 243 ISAIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHHHCTTCCEESS
T ss_pred HHHHHHHCcccCeECC
Confidence 2234455666666653
No 156
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.13 E-value=2.3e-05 Score=71.64 Aligned_cols=324 Identities=19% Similarity=0.272 Sum_probs=147.5
Q ss_pred cccCCcceeeeccccccChhHHHHHHhhhCCCccEEEeccCCccChhhHHHHHhcCCCCceeeccccccchhhHHHHhhc
Q 013172 26 KVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQG 105 (448)
Q Consensus 26 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 105 (448)
..|.+|+++.+... +...+-.++ ..+ .+|+.+++... ++..+-.. ...|++|+.+.+..+ +...+..++. .
T Consensus 68 ~~c~~L~~i~lp~~--i~~I~~~aF-~~c-~~L~~i~lp~~--l~~I~~~a-F~~c~~L~~i~~p~~-l~~i~~~aF~-~ 138 (394)
T 4fs7_A 68 QGCRKVTEIKIPST--VREIGEFAF-ENC-SKLEIINIPDS--VKMIGRCT-FSGCYALKSILLPLM-LKSIGVEAFK-G 138 (394)
T ss_dssp TTCTTEEEEECCTT--CCEECTTTT-TTC-TTCCEECCCTT--CCEECTTT-TTTCTTCCCCCCCTT-CCEECTTTTT-T
T ss_pred hCCCCceEEEeCCC--ccCcchhHh-hCC-CCCcEEEeCCC--ceEccchh-hcccccchhhcccCc-eeeecceeee-c
Confidence 45677777777532 222111111 222 56777777542 22222122 245677777666432 1111111111 1
Q ss_pred CCcccEEEeeccCCCcHHHHHHHhhccccccccccccc-cCChhHHHHHhhcCCCCCEEeecCCc-cCChhhHHHHHhcC
Q 013172 106 CPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQ-QFTDKGLHAVGKGCKKLKNLTLSDCY-FLSDMGLEAIATGC 183 (448)
Q Consensus 106 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~ 183 (448)
+. +....+.. ...... ......|++|+.+.+.+.. .+.. ..+..+++|+.+.+...- .+.+. ....+
T Consensus 139 ~~-~~~~~~~~-~~~~i~-~~aF~~c~~L~~i~l~~~~~~I~~----~~F~~c~~L~~i~l~~~~~~I~~~----~F~~~ 207 (394)
T 4fs7_A 139 CD-FKEITIPE-GVTVIG-DEAFATCESLEYVSLPDSMETLHN----GLFSGCGKLKSIKLPRNLKIIRDY----CFAEC 207 (394)
T ss_dssp CC-CSEEECCT-TCCEEC-TTTTTTCTTCCEEECCTTCCEECT----TTTTTCTTCCBCCCCTTCCEECTT----TTTTC
T ss_pred cc-ccccccCc-cccccc-hhhhcccCCCcEEecCCccceecc----ccccCCCCceEEEcCCCceEeCch----hhccc
Confidence 22 22222210 011000 1112336777777775321 1111 223456777777775531 11111 12346
Q ss_pred CCCcEEEecCCCCCChhhHHHHhhcCCCcceEecccccccCchhHHHHhccCcCCceEeccCCcCcChHHHHHHHHhCCC
Q 013172 184 KELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQN 263 (448)
Q Consensus 184 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 263 (448)
+.|+.+.+.... ... ......+..|+.+.+... ..... ......+..++.+.+.... .... ...+..++.
T Consensus 208 ~~L~~i~~~~~~--~~i--~~~~~~~~~l~~i~ip~~--~~~i~-~~~f~~~~~l~~~~~~~~~--~~i~-~~~F~~~~~ 277 (394)
T 4fs7_A 208 ILLENMEFPNSL--YYL--GDFALSKTGVKNIIIPDS--FTELG-KSVFYGCTDLESISIQNNK--LRIG-GSLFYNCSG 277 (394)
T ss_dssp TTCCBCCCCTTC--CEE--CTTTTTTCCCCEEEECTT--CCEEC-SSTTTTCSSCCEEEECCTT--CEEC-SCTTTTCTT
T ss_pred cccceeecCCCc--eEe--ehhhcccCCCceEEECCC--ceecc-cccccccccceeEEcCCCc--ceee-ccccccccc
Confidence 677776665421 111 111122367777776532 11111 0112346677777775421 1000 111234667
Q ss_pred CcEEEccccccccCchHhHhhhcCCCCcEEeccccCCcCchHHHhhccCCCccEEeeeCccccChHHHHHHHhhCCCCCE
Q 013172 264 LKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNY 343 (448)
Q Consensus 264 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 343 (448)
++.+..... .+.+. ....+.+|+.+.+.. .+...+-.++....+|+.+.+.. .++..+-. ...+|.+|+.
T Consensus 278 l~~~~~~~~-~i~~~----~F~~~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~-aF~~c~~L~~ 347 (394)
T 4fs7_A 278 LKKVIYGSV-IVPEK----TFYGCSSLTEVKLLD--SVKFIGEEAFESCTSLVSIDLPY--LVEEIGKR-SFRGCTSLSN 347 (394)
T ss_dssp CCEEEECSS-EECTT----TTTTCTTCCEEEECT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTT-TTTTCTTCCE
T ss_pred cceeccCce-eeccc----ccccccccccccccc--ccceechhhhcCCCCCCEEEeCC--cccEEhHH-hccCCCCCCE
Confidence 777666542 22222 223577888877754 24333444455555688887753 23222211 2236788888
Q ss_pred EeccCcCCCCHHHHHHHhcCCCCCcEEeccCCCCCChHHHHHHHHcCccCceE
Q 013172 344 LDVSVLQNLGDQAMVELGKGCPLLKDVVLSHCRQITDVGLSHLVKNCRMLESC 396 (448)
Q Consensus 344 L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L 396 (448)
+.+... +...+-. .+.+|++|+++++.. .++... ..+..|++|+.+
T Consensus 348 i~lp~~--l~~I~~~-aF~~C~~L~~i~lp~--~~~~~~--~~F~~c~~L~~I 393 (394)
T 4fs7_A 348 INFPLS--LRKIGAN-AFQGCINLKKVELPK--RLEQYR--YDFEDTTKFKWI 393 (394)
T ss_dssp ECCCTT--CCEECTT-TBTTCTTCCEEEEEG--GGGGGG--GGBCTTCEEEEE
T ss_pred EEECcc--ccEehHH-HhhCCCCCCEEEECC--CCEEhh--heecCCCCCcEE
Confidence 888643 2222211 234688888888865 233322 223356666654
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.99 E-value=0.00012 Score=66.80 Aligned_cols=127 Identities=17% Similarity=0.244 Sum_probs=63.1
Q ss_pred hcCCCCcEEeccccCCcCchHHHhhccCCCccEEeeeCccccChHHHHHHHhhCCCCCEEeccCc-CCCCHHHHHHHhcC
Q 013172 285 EHCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVL-QNLGDQAMVELGKG 363 (448)
Q Consensus 285 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~l~~~~~~~~~~~ 363 (448)
..|..|+.+.+... +...+-.++.....|+.+.+.. .++..+-. ...+|.+|+.+.|... ..+.+. .+.+
T Consensus 262 ~~c~~L~~i~lp~~--~~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~-aF~~c~~L~~i~lp~~v~~I~~~----aF~~ 332 (394)
T 4gt6_A 262 DSCAYLASVKMPDS--VVSIGTGAFMNCPALQDIEFSS--RITELPES-VFAGCISLKSIDIPEGITQILDD----AFAG 332 (394)
T ss_dssp TTCSSCCEEECCTT--CCEECTTTTTTCTTCCEEECCT--TCCEECTT-TTTTCTTCCEEECCTTCCEECTT----TTTT
T ss_pred eecccccEEecccc--cceecCcccccccccccccCCC--cccccCce-eecCCCCcCEEEeCCcccEehHh----HhhC
Confidence 35777777777542 2233334444545677777753 22221111 2335778888887542 122222 2245
Q ss_pred CCCCcEEeccCCCCCChHHHHHHHHcCccCceEeccCCCCCCHHHHHHHHhcCccceEEEEeeee
Q 013172 364 CPLLKDVVLSHCRQITDVGLSHLVKNCRMLESCHMVYCPGITAAGVATVVSGCANIKKVMVEKWK 428 (448)
Q Consensus 364 ~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~L~l~~~~ 428 (448)
|++|+++.+.. .++..+-..+ ..|.+|+.+.+.++. ... ..+..+.+|+.+.+..+.
T Consensus 333 C~~L~~i~ip~--sv~~I~~~aF-~~C~~L~~i~~~~~~----~~~-~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 333 CEQLERIAIPS--SVTKIPESAF-SNCTALNNIEYSGSR----SQW-NAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp CTTCCEEEECT--TCCBCCGGGG-TTCTTCCEEEESSCH----HHH-HTCBCCCCC---------
T ss_pred CCCCCEEEECc--ccCEEhHhHh-hCCCCCCEEEECCce----eeh-hhhhccCCCCEEEeCCCC
Confidence 78888888854 2443333333 368888888887642 111 224566777777766543
No 158
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.72 E-value=0.00046 Score=61.72 Aligned_cols=85 Identities=24% Similarity=0.230 Sum_probs=38.3
Q ss_pred CCcceeeecc-ccccChhHHHHHHhhhCCCccEEEeccCCccChhhHHHHHhcCCCCceeeccccccchhhHHHHhhcCC
Q 013172 29 NQLEDLNLRF-CEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCP 107 (448)
Q Consensus 29 ~~L~~L~l~~-~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 107 (448)
++|+.|+|++ + .+.......+ ..+ ++|++|+|++|. ++...... ...+++|+.|+|++|.+...... .+..++
T Consensus 31 ~~L~~L~l~~~n-~l~~~~~~~~-~~l-~~L~~L~l~~N~-l~~~~~~~-~~~l~~L~~L~l~~N~l~~~~~~-~~~~~~ 104 (347)
T 2ifg_A 31 ENLTELYIENQQ-HLQHLELRDL-RGL-GELRNLTIVKSG-LRFVAPDA-FHFTPRLSRLNLSFNALESLSWK-TVQGLS 104 (347)
T ss_dssp SCCSEEECCSCS-SCCEECGGGS-CSC-CCCSEEECCSSC-CCEECTTG-GGSCSCCCEEECCSSCCSCCCST-TTCSCC
T ss_pred CCeeEEEccCCC-CCCCcChhHh-ccc-cCCCEEECCCCc-cceeCHHH-hcCCcCCCEEeCCCCccceeCHH-HcccCC
Confidence 5566666664 3 3332111111 112 556666666653 43322222 23456666666666655432211 122222
Q ss_pred cccEEEeeccCCC
Q 013172 108 LLRVLKLQCINVT 120 (448)
Q Consensus 108 ~L~~L~l~~~~~~ 120 (448)
|+.|++.+|.+.
T Consensus 105 -L~~l~l~~N~~~ 116 (347)
T 2ifg_A 105 -LQELVLSGNPLH 116 (347)
T ss_dssp -CCEEECCSSCCC
T ss_pred -ceEEEeeCCCcc
Confidence 666666555543
No 159
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.64 E-value=0.00061 Score=60.94 Aligned_cols=62 Identities=18% Similarity=0.106 Sum_probs=31.7
Q ss_pred CCccEEEecc-CCccChhhHHHHHhcCCCCceeeccccccchhhHHHHhhcCCcccEEEeeccCCC
Q 013172 56 KSLKSLGIAA-CVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVT 120 (448)
Q Consensus 56 ~~L~~L~l~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 120 (448)
.+|++|+|++ +. ++...... +..+++|+.|+|++|.+....... +..+++|++|+|++|.+.
T Consensus 31 ~~L~~L~l~~~n~-l~~~~~~~-~~~l~~L~~L~l~~N~l~~~~~~~-~~~l~~L~~L~l~~N~l~ 93 (347)
T 2ifg_A 31 ENLTELYIENQQH-LQHLELRD-LRGLGELRNLTIVKSGLRFVAPDA-FHFTPRLSRLNLSFNALE 93 (347)
T ss_dssp SCCSEEECCSCSS-CCEECGGG-SCSCCCCSEEECCSSCCCEECTTG-GGSCSCCCEEECCSSCCS
T ss_pred CCeeEEEccCCCC-CCCcChhH-hccccCCCEEECCCCccceeCHHH-hcCCcCCCEEeCCCCccc
Confidence 4566666664 32 33322222 234566666666666654432222 234566666666665554
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.54 E-value=0.001 Score=60.61 Aligned_cols=124 Identities=14% Similarity=0.237 Sum_probs=59.6
Q ss_pred HhCCCCcEEEccccccccCchHhHhhhcCCCCcEEeccccCCcCchHHHhhccCCCccEEeeeCccccChHHHHHHHhhC
Q 013172 259 EGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGC 338 (448)
Q Consensus 259 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 338 (448)
..|..|+.+.+... +...+- ....+|+.|+.+.+.. .+...+-.++....+|+.+.+.. .++..+-. ...+|
T Consensus 262 ~~c~~L~~i~lp~~--~~~I~~-~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~-aF~~C 333 (394)
T 4gt6_A 262 DSCAYLASVKMPDS--VVSIGT-GAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPE--GITQILDD-AFAGC 333 (394)
T ss_dssp TTCSSCCEEECCTT--CCEECT-TTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECTT-TTTTC
T ss_pred eecccccEEecccc--cceecC-cccccccccccccCCC--cccccCceeecCCCCcCEEEeCC--cccEehHh-HhhCC
Confidence 34667777777542 111111 1223577777777743 23333334455545677777753 22221111 22357
Q ss_pred CCCCEEeccCc-CCCCHHHHHHHhcCCCCCcEEeccCCCCCChHHHHHHHHcCccCceEecc
Q 013172 339 PELNYLDVSVL-QNLGDQAMVELGKGCPLLKDVVLSHCRQITDVGLSHLVKNCRMLESCHMV 399 (448)
Q Consensus 339 ~~L~~L~l~~~-~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~ 399 (448)
.+|+.+.|... ..+.+.. +.+|++|+.+++.+ . .. ....+ ..+..|+.+.+.
T Consensus 334 ~~L~~i~ip~sv~~I~~~a----F~~C~~L~~i~~~~-~-~~--~~~~~-~~~~~L~~i~i~ 386 (394)
T 4gt6_A 334 EQLERIAIPSSVTKIPESA----FSNCTALNNIEYSG-S-RS--QWNAI-STDSGLQNLPVA 386 (394)
T ss_dssp TTCCEEEECTTCCBCCGGG----GTTCTTCCEEEESS-C-HH--HHHTC-BCCCCC------
T ss_pred CCCCEEEECcccCEEhHhH----hhCCCCCCEEEECC-c-ee--ehhhh-hccCCCCEEEeC
Confidence 78888887542 1233222 24678888888866 2 11 11222 245667766664
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=84.31 E-value=0.27 Score=44.21 Aligned_cols=53 Identities=15% Similarity=0.264 Sum_probs=27.4
Q ss_pred CCccEEEeccCCccChhhHHHHHhcCCCCceeeccccccchhhHHHHhhcCCcccEEEe
Q 013172 56 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKL 114 (448)
Q Consensus 56 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 114 (448)
.+|+++.+.. .++..+-.++ ..|.+|+++.+..+ ++..+-.++. ++ +|+.+.+
T Consensus 46 ~~i~~v~ip~--~vt~Ig~~aF-~~C~~L~~I~lp~~-v~~Ig~~aF~-~c-~l~~i~~ 98 (379)
T 4h09_A 46 DRISEVRVNS--GITSIGEANF-NSCYNMTKVTVAST-VTSIGDGAFA-DT-KLQSYTG 98 (379)
T ss_dssp GGCSEEEECT--TEEEECTTTT-TTCTTCCEEEECTT-CCEECTTTTT-TC-CCCEEEE
T ss_pred cCCEEEEeCC--CccChHHHHh-hCCCCCCEEEeCCc-ceEechhhhc-CC-CCceEEC
Confidence 4677777764 2333332322 46778888887543 3332222332 23 4666655
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=80.12 E-value=0.25 Score=44.35 Aligned_cols=127 Identities=18% Similarity=0.240 Sum_probs=67.7
Q ss_pred hCCCCcEEEccccccccCchHhHhhhcCCCCcEEeccccCCcCchHHHhhccCCCccEEeeeCccccChHHHHHHHhhCC
Q 013172 260 GCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCP 339 (448)
Q Consensus 260 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 339 (448)
.+.+|+.+.+... +...+.. ....+..|+.+.+.. .+...+..++....+|+.+.+.. .+...+-. ....|+
T Consensus 215 ~~~~l~~i~~~~~--~~~i~~~-~f~~~~~L~~i~lp~--~v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~-aF~~c~ 286 (379)
T 4h09_A 215 YGKNLKKITITSG--VTTLGDG-AFYGMKALDEIAIPK--NVTSIGSFLLQNCTALKTLNFYA--KVKTVPYL-LCSGCS 286 (379)
T ss_dssp TCSSCSEEECCTT--CCEECTT-TTTTCSSCCEEEECT--TCCEECTTTTTTCTTCCEEEECC--CCSEECTT-TTTTCT
T ss_pred cccccceeeeccc--eeEEccc-cccCCccceEEEcCC--CccEeCccccceeehhccccccc--cceecccc-cccccc
Confidence 3667777777542 2221111 223577888887754 24433444455555688887754 22221111 234678
Q ss_pred CCCEEeccCcCCCCHHHHHHHhcCCCCCcEEeccCCCCCChHHHHHHHHcCccCceEecc
Q 013172 340 ELNYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSHCRQITDVGLSHLVKNCRMLESCHMV 399 (448)
Q Consensus 340 ~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~ 399 (448)
+|+.+.+.++ .+...+-. .+.+|++|+.+.+.. .++..+-..+ ..|.+|+.+.+.
T Consensus 287 ~L~~i~l~~~-~i~~I~~~-aF~~c~~L~~i~lp~--~l~~I~~~aF-~~C~~L~~i~ip 341 (379)
T 4h09_A 287 NLTKVVMDNS-AIETLEPR-VFMDCVKLSSVTLPT--ALKTIQVYAF-KNCKALSTISYP 341 (379)
T ss_dssp TCCEEEECCT-TCCEECTT-TTTTCTTCCEEECCT--TCCEECTTTT-TTCTTCCCCCCC
T ss_pred cccccccccc-ccceehhh-hhcCCCCCCEEEcCc--cccEEHHHHh-hCCCCCCEEEEC
Confidence 8888888654 22211111 224578888888854 2443333333 357778877774
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=74.44 E-value=2 Score=31.55 Aligned_cols=34 Identities=18% Similarity=0.122 Sum_probs=14.6
Q ss_pred CCceeeccccccchhhHHHHhhcCCcccEEEeecc
Q 013172 83 SLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCI 117 (448)
Q Consensus 83 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 117 (448)
+|++|+|++|.++...... +..+++|+.|+|++|
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~-f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGL-LDALPALRTAHLGAN 65 (130)
T ss_dssp TCSEEECTTSCCSSCCTTT-GGGCTTCCEEECCSS
T ss_pred CCCEEECCCCcCCccChhh-hhhccccCEEEecCC
Confidence 3555555554443322221 223445555555444
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=71.84 E-value=2 Score=31.52 Aligned_cols=40 Identities=18% Similarity=-0.019 Sum_probs=26.7
Q ss_pred CCcceeeeccccccChhHHHHHHhhhCCCccEEEeccCCccCh
Q 013172 29 NQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITD 71 (448)
Q Consensus 29 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 71 (448)
++|+.|+|+++ .++...... +..+ ++|+.|+|.+|.+.-+
T Consensus 31 ~~l~~L~Ls~N-~l~~l~~~~-f~~l-~~L~~L~L~~NP~~Cd 70 (130)
T 3rfe_A 31 VDTTELVLTGN-NLTALPPGL-LDAL-PALRTAHLGANPWRCD 70 (130)
T ss_dssp TTCSEEECTTS-CCSSCCTTT-GGGC-TTCCEEECCSSCCBCS
T ss_pred cCCCEEECCCC-cCCccChhh-hhhc-cccCEEEecCCCeecc
Confidence 47999999988 444332222 2333 7899999999876543
Done!