Query 013173
Match_columns 448
No_of_seqs 371 out of 2639
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 01:08:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013173.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013173hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0335 ATP-dependent RNA heli 100.0 1.8E-64 3.9E-69 498.6 26.5 333 115-447 44-380 (482)
2 KOG0331 ATP-dependent RNA heli 100.0 1.1E-60 2.4E-65 479.3 30.6 291 146-447 92-384 (519)
3 KOG0330 ATP-dependent RNA heli 100.0 3E-57 6.6E-62 428.9 22.7 284 143-447 59-343 (476)
4 PTZ00110 helicase; Provisional 100.0 7.5E-55 1.6E-59 456.7 38.5 299 135-447 120-420 (545)
5 COG0513 SrmB Superfamily II DN 100.0 2.6E-55 5.6E-60 456.2 33.1 284 145-447 29-316 (513)
6 KOG0333 U5 snRNP-like RNA heli 100.0 5.2E-55 1.1E-59 426.6 27.7 311 129-447 229-560 (673)
7 KOG0328 Predicted ATP-dependen 100.0 2.4E-55 5.2E-60 400.1 23.3 286 141-447 23-309 (400)
8 KOG0338 ATP-dependent RNA heli 100.0 3.2E-55 6.9E-60 426.6 19.9 286 144-447 180-469 (691)
9 KOG0339 ATP-dependent RNA heli 100.0 5.6E-54 1.2E-58 417.4 25.9 301 132-447 210-511 (731)
10 KOG0341 DEAD-box protein abstr 100.0 2.6E-54 5.7E-59 407.9 13.4 299 135-447 160-464 (610)
11 KOG0336 ATP-dependent RNA heli 100.0 2.3E-52 5E-57 397.2 21.1 297 136-447 210-508 (629)
12 KOG0342 ATP-dependent RNA heli 100.0 3.8E-51 8.3E-56 397.9 26.2 288 143-446 80-372 (543)
13 PLN00206 DEAD-box ATP-dependen 100.0 8.8E-50 1.9E-54 417.0 34.1 303 132-447 108-411 (518)
14 KOG0343 RNA Helicase [RNA proc 100.0 7.1E-51 1.5E-55 399.5 24.0 287 143-447 67-358 (758)
15 PRK04837 ATP-dependent RNA hel 100.0 2.8E-49 6.1E-54 404.9 33.3 291 145-447 8-298 (423)
16 PRK10590 ATP-dependent RNA hel 100.0 7.4E-49 1.6E-53 404.9 32.7 287 146-447 2-288 (456)
17 PRK04537 ATP-dependent RNA hel 100.0 9.5E-49 2.1E-53 412.0 33.2 291 145-447 9-300 (572)
18 PRK11634 ATP-dependent RNA hel 100.0 1E-48 2.3E-53 414.2 32.9 283 144-447 5-288 (629)
19 PRK11776 ATP-dependent RNA hel 100.0 1.6E-48 3.6E-53 403.4 32.4 281 145-447 4-285 (460)
20 KOG0345 ATP-dependent RNA heli 100.0 5.8E-49 1.2E-53 380.3 26.2 286 146-447 5-300 (567)
21 KOG0326 ATP-dependent RNA heli 100.0 2.8E-50 6.1E-55 372.5 14.5 281 145-447 85-365 (459)
22 KOG0348 ATP-dependent RNA heli 100.0 6.8E-49 1.5E-53 384.4 22.8 299 142-447 133-490 (708)
23 KOG0340 ATP-dependent RNA heli 100.0 7.2E-49 1.6E-53 368.0 21.3 286 144-447 6-297 (442)
24 KOG0334 RNA helicase [RNA proc 100.0 1E-48 2.2E-53 411.2 22.8 300 133-447 353-656 (997)
25 KOG0346 RNA helicase [RNA proc 100.0 7E-48 1.5E-52 369.8 22.1 289 145-447 19-311 (569)
26 PRK11192 ATP-dependent RNA hel 100.0 1.3E-46 2.8E-51 386.8 33.1 285 146-447 2-288 (434)
27 PRK01297 ATP-dependent RNA hel 100.0 1.1E-44 2.4E-49 376.0 36.4 293 143-447 85-378 (475)
28 KOG0327 Translation initiation 100.0 4.6E-46 9.9E-51 353.8 19.5 281 144-447 25-306 (397)
29 KOG0347 RNA helicase [RNA proc 100.0 4.7E-46 1E-50 365.6 14.8 298 142-447 178-506 (731)
30 KOG0337 ATP-dependent RNA heli 100.0 2.6E-45 5.6E-50 350.6 18.6 283 144-445 20-302 (529)
31 PTZ00424 helicase 45; Provisio 100.0 8.5E-43 1.8E-47 355.0 32.3 283 144-447 27-310 (401)
32 KOG0332 ATP-dependent RNA heli 100.0 4.5E-44 9.7E-49 337.6 20.2 288 136-447 81-373 (477)
33 KOG4284 DEAD box protein [Tran 100.0 9.7E-44 2.1E-48 354.2 20.2 289 137-447 17-315 (980)
34 KOG0329 ATP-dependent RNA heli 100.0 3.2E-41 6.9E-46 303.7 15.5 263 134-417 31-296 (387)
35 TIGR03817 DECH_helic helicase/ 100.0 2.1E-38 4.6E-43 341.8 27.7 271 151-447 20-322 (742)
36 KOG0344 ATP-dependent RNA heli 100.0 2.2E-39 4.8E-44 322.6 18.5 302 131-447 118-431 (593)
37 TIGR02621 cas3_GSU0051 CRISPR- 100.0 5.9E-37 1.3E-41 325.7 28.7 257 163-444 12-310 (844)
38 KOG0350 DEAD-box ATP-dependent 100.0 1.9E-35 4.1E-40 288.3 22.1 288 144-447 126-476 (620)
39 PLN03137 ATP-dependent DNA hel 100.0 2.6E-34 5.7E-39 309.8 28.0 265 150-447 442-723 (1195)
40 PRK13767 ATP-dependent helicas 100.0 3.1E-34 6.7E-39 315.2 27.6 283 152-447 18-333 (876)
41 PRK00254 ski2-like helicase; P 100.0 2.9E-34 6.2E-39 311.4 26.7 274 146-447 2-314 (720)
42 PRK09401 reverse gyrase; Revie 100.0 7.8E-34 1.7E-38 316.3 29.0 251 159-438 72-365 (1176)
43 TIGR00614 recQ_fam ATP-depende 100.0 7.7E-34 1.7E-38 294.1 27.1 253 162-447 6-269 (470)
44 PRK02362 ski2-like helicase; P 100.0 3.7E-34 8.1E-39 311.3 24.9 274 146-447 2-322 (737)
45 TIGR01389 recQ ATP-dependent D 100.0 7E-33 1.5E-37 294.8 27.3 252 162-447 8-267 (591)
46 PRK11057 ATP-dependent DNA hel 100.0 1.2E-32 2.6E-37 292.7 28.7 257 157-447 14-279 (607)
47 cd00268 DEADc DEAD-box helicas 100.0 8.1E-33 1.8E-37 255.2 23.3 202 147-360 1-202 (203)
48 TIGR01054 rgy reverse gyrase. 100.0 3.4E-32 7.4E-37 303.6 27.6 257 154-440 65-365 (1171)
49 COG1201 Lhr Lhr-like helicases 100.0 2.9E-32 6.3E-37 288.5 25.5 279 152-446 8-296 (814)
50 PRK14701 reverse gyrase; Provi 100.0 4.3E-32 9.4E-37 308.3 27.9 256 154-437 66-366 (1638)
51 PRK01172 ski2-like helicase; P 100.0 5.3E-32 1.2E-36 292.3 25.1 272 146-447 2-304 (674)
52 PRK10689 transcription-repair 100.0 1.7E-30 3.8E-35 289.1 29.1 255 154-447 588-854 (1147)
53 TIGR00580 mfd transcription-re 100.0 3E-30 6.5E-35 281.6 29.0 257 152-447 436-705 (926)
54 PRK09751 putative ATP-dependen 100.0 1.2E-29 2.6E-34 284.0 24.7 251 187-447 1-320 (1490)
55 KOG0349 Putative DEAD-box RNA 100.0 2.8E-30 6E-35 248.1 14.9 226 222-447 285-551 (725)
56 PRK10917 ATP-dependent DNA hel 100.0 2.3E-28 5E-33 262.8 29.2 252 158-447 253-524 (681)
57 PHA02653 RNA helicase NPH-II; 100.0 2.7E-28 5.9E-33 258.0 25.5 246 170-443 167-436 (675)
58 TIGR00643 recG ATP-dependent D 100.0 6.5E-28 1.4E-32 257.6 28.0 259 154-447 223-501 (630)
59 COG0514 RecQ Superfamily II DN 100.0 8.9E-29 1.9E-33 253.6 19.0 254 162-446 12-272 (590)
60 COG1202 Superfamily II helicas 100.0 2.9E-28 6.3E-33 241.5 21.8 281 146-446 195-482 (830)
61 PF00270 DEAD: DEAD/DEAH box h 100.0 4.1E-28 8.9E-33 216.8 16.5 168 169-349 1-169 (169)
62 TIGR01970 DEAH_box_HrpB ATP-de 100.0 6.6E-27 1.4E-31 253.0 27.0 240 174-447 9-255 (819)
63 PRK11664 ATP-dependent RNA hel 100.0 1E-26 2.2E-31 252.1 26.5 240 174-447 12-258 (812)
64 TIGR03158 cas3_cyano CRISPR-as 100.0 3.6E-26 7.9E-31 228.4 26.5 256 171-447 1-317 (357)
65 PHA02558 uvsW UvsW helicase; P 99.9 1E-26 2.2E-31 242.5 22.4 248 165-447 112-387 (501)
66 TIGR01587 cas3_core CRISPR-ass 99.9 7.3E-27 1.6E-31 234.4 19.5 238 184-446 1-266 (358)
67 COG1205 Distinct helicase fami 99.9 3.7E-26 7.9E-31 248.1 25.8 276 152-447 55-357 (851)
68 PRK12898 secA preprotein trans 99.9 3.2E-25 6.9E-30 231.6 24.5 256 166-445 102-514 (656)
69 COG1204 Superfamily II helicas 99.9 4.7E-25 1E-29 236.5 19.9 253 150-425 14-274 (766)
70 KOG0952 DNA/RNA helicase MER3/ 99.9 1.2E-24 2.5E-29 228.5 19.4 262 162-437 105-386 (1230)
71 KOG0351 ATP-dependent DNA heli 99.9 1.5E-24 3.3E-29 234.3 20.8 262 154-446 251-527 (941)
72 KOG0352 ATP-dependent DNA heli 99.9 6.5E-25 1.4E-29 211.1 13.7 268 155-446 6-297 (641)
73 PRK09200 preprotein translocas 99.9 3.7E-23 8.1E-28 220.5 24.8 130 164-310 76-212 (790)
74 PRK13766 Hef nuclease; Provisi 99.9 1.3E-22 2.9E-27 222.9 29.0 161 164-342 12-172 (773)
75 TIGR03714 secA2 accessory Sec 99.9 6.6E-23 1.4E-27 216.7 23.6 129 167-310 70-208 (762)
76 TIGR00963 secA preprotein tran 99.9 9.5E-23 2.1E-27 214.3 22.2 129 166-311 55-190 (745)
77 PRK11131 ATP-dependent RNA hel 99.9 1.6E-22 3.5E-27 223.5 24.0 236 174-447 81-332 (1294)
78 COG1111 MPH1 ERCC4-like helica 99.9 1.1E-21 2.4E-26 193.7 22.2 172 164-353 12-186 (542)
79 KOG0353 ATP-dependent DNA heli 99.9 8.4E-22 1.8E-26 187.1 17.7 267 147-444 73-357 (695)
80 PRK12899 secA preprotein trans 99.9 2E-22 4.3E-27 214.4 14.5 149 148-311 65-229 (970)
81 PRK13104 secA preprotein trans 99.9 4.1E-21 8.8E-26 204.7 24.1 127 167-310 82-215 (896)
82 PRK09694 helicase Cas3; Provis 99.9 1.4E-20 3.1E-25 204.0 25.0 261 165-445 284-604 (878)
83 smart00487 DEXDc DEAD-like hel 99.9 1.1E-20 2.4E-25 171.7 19.7 188 162-364 3-192 (201)
84 PRK05580 primosome assembly pr 99.9 4.4E-20 9.6E-25 198.2 26.6 249 167-447 144-473 (679)
85 PRK12904 preprotein translocas 99.9 4E-20 8.7E-25 196.9 22.6 128 166-310 80-214 (830)
86 TIGR01967 DEAH_box_HrpA ATP-de 99.8 1.9E-19 4.1E-24 200.0 26.8 250 164-447 61-325 (1283)
87 KOG0354 DEAD-box like helicase 99.8 6.2E-20 1.3E-24 191.0 20.9 175 152-344 47-223 (746)
88 TIGR00603 rad25 DNA repair hel 99.8 4E-19 8.7E-24 188.1 19.4 241 166-447 254-534 (732)
89 KOG0951 RNA helicase BRR2, DEA 99.8 6E-19 1.3E-23 188.1 19.5 262 152-425 296-567 (1674)
90 COG4581 Superfamily II RNA hel 99.8 2E-18 4.4E-23 186.2 20.2 176 160-360 113-290 (1041)
91 COG1061 SSL2 DNA or RNA helica 99.8 1.7E-18 3.7E-23 177.6 17.9 244 165-447 34-325 (442)
92 PRK13107 preprotein translocas 99.8 2.1E-17 4.5E-22 176.1 21.7 128 167-311 82-216 (908)
93 TIGR00595 priA primosomal prot 99.8 1.7E-17 3.6E-22 172.4 20.6 223 186-443 1-299 (505)
94 KOG0947 Cytoplasmic exosomal R 99.7 5.5E-17 1.2E-21 169.6 19.4 152 167-346 297-448 (1248)
95 COG1200 RecG RecG-like helicas 99.7 4.8E-16 1.1E-20 160.0 24.2 259 152-447 247-526 (677)
96 KOG0948 Nuclear exosomal RNA h 99.7 4.5E-17 9.7E-22 166.5 14.0 232 167-429 129-408 (1041)
97 COG1110 Reverse gyrase [DNA re 99.7 7E-16 1.5E-20 163.2 21.8 252 156-437 71-371 (1187)
98 cd00046 DEXDc DEAD-like helica 99.7 3.8E-16 8.2E-21 133.5 15.1 144 183-342 1-144 (144)
99 PRK11448 hsdR type I restricti 99.7 9.9E-16 2.1E-20 171.0 21.3 161 166-345 412-597 (1123)
100 COG1203 CRISPR-associated heli 99.7 8.7E-16 1.9E-20 166.7 17.5 263 168-447 196-483 (733)
101 KOG0950 DNA polymerase theta/e 99.6 1.4E-15 2.9E-20 160.2 13.7 188 152-357 208-400 (1008)
102 PRK04914 ATP-dependent helicas 99.6 1.4E-14 3E-19 158.8 21.1 157 167-342 152-315 (956)
103 COG4098 comFA Superfamily II D 99.6 7.3E-14 1.6E-18 132.2 22.1 232 167-438 97-341 (441)
104 PRK12906 secA preprotein trans 99.6 1.1E-13 2.3E-18 147.6 21.2 128 166-310 79-213 (796)
105 COG1197 Mfd Transcription-repa 99.6 2.2E-13 4.8E-18 147.8 22.9 258 152-447 579-848 (1139)
106 TIGR01407 dinG_rel DnaQ family 99.6 3.1E-13 6.8E-18 149.6 24.5 96 152-261 231-333 (850)
107 PF04851 ResIII: Type III rest 99.6 2.5E-14 5.5E-19 128.9 11.9 152 167-343 3-183 (184)
108 COG1643 HrpA HrpA-like helicas 99.5 8.1E-13 1.8E-17 142.2 22.5 240 174-447 57-306 (845)
109 KOG0920 ATP-dependent RNA heli 99.5 1.3E-12 2.8E-17 140.3 22.4 251 169-446 175-462 (924)
110 TIGR00348 hsdR type I site-spe 99.5 1.4E-12 3.1E-17 140.3 21.9 150 168-343 239-403 (667)
111 COG4096 HsdR Type I site-speci 99.5 1.2E-12 2.6E-17 137.0 18.1 247 167-443 165-470 (875)
112 PLN03142 Probable chromatin-re 99.5 6.3E-12 1.4E-16 138.6 23.2 154 167-342 169-329 (1033)
113 PF06862 DUF1253: Protein of u 99.4 2.9E-11 6.2E-16 121.7 22.5 226 216-444 30-340 (442)
114 PRK12326 preprotein translocas 99.4 1.9E-11 4.2E-16 128.1 21.7 128 166-310 77-211 (764)
115 KOG0922 DEAH-box RNA helicase 99.4 6.3E-11 1.4E-15 121.6 23.3 240 174-447 58-309 (674)
116 KOG1123 RNA polymerase II tran 99.3 8E-12 1.7E-16 123.5 9.0 242 166-447 301-581 (776)
117 KOG0951 RNA helicase BRR2, DEA 99.3 1.5E-11 3.3E-16 132.5 11.2 230 165-425 1141-1380(1674)
118 TIGR03117 cas_csf4 CRISPR-asso 99.3 3.9E-11 8.4E-16 126.5 13.1 72 178-260 12-86 (636)
119 COG0556 UvrB Helicase subunit 99.3 1.9E-10 4.1E-15 115.1 16.9 104 332-447 386-489 (663)
120 KOG2340 Uncharacterized conser 99.3 3.8E-11 8.3E-16 119.5 11.9 265 167-435 216-583 (698)
121 PRK13103 secA preprotein trans 99.2 2.5E-10 5.4E-15 122.7 17.9 128 166-310 81-215 (913)
122 PRK07246 bifunctional ATP-depe 99.2 5.3E-11 1.2E-15 130.5 13.3 83 164-261 243-330 (820)
123 KOG0949 Predicted helicase, DE 99.2 5.9E-11 1.3E-15 125.3 11.3 166 167-351 511-682 (1330)
124 CHL00122 secA preprotein trans 99.2 5.1E-10 1.1E-14 119.7 17.6 127 167-310 76-209 (870)
125 KOG0385 Chromatin remodeling c 99.2 1.7E-09 3.7E-14 112.1 18.8 254 167-447 167-530 (971)
126 KOG0923 mRNA splicing factor A 99.1 3.8E-09 8.2E-14 108.0 20.1 244 169-447 267-525 (902)
127 COG1198 PriA Primosomal protei 99.1 9.1E-10 2E-14 117.3 16.3 220 167-421 198-437 (730)
128 PRK12902 secA preprotein trans 99.1 2.7E-09 5.9E-14 114.2 19.3 127 167-310 85-218 (939)
129 KOG0926 DEAH-box RNA helicase 99.1 1.9E-09 4.1E-14 112.1 16.7 222 178-427 267-504 (1172)
130 PF07652 Flavi_DEAD: Flaviviru 99.1 5.1E-10 1.1E-14 95.2 9.1 138 181-346 3-140 (148)
131 smart00489 DEXDc3 DEAD-like he 99.1 1.5E-09 3.2E-14 105.5 13.1 73 167-246 8-84 (289)
132 smart00488 DEXDc2 DEAD-like he 99.1 1.5E-09 3.2E-14 105.5 13.1 73 167-246 8-84 (289)
133 PRK12903 secA preprotein trans 99.0 2.5E-08 5.5E-13 106.5 20.5 127 167-310 78-211 (925)
134 KOG0925 mRNA splicing factor A 99.0 4E-08 8.7E-13 97.5 20.0 260 144-435 24-293 (699)
135 TIGR00631 uvrb excinuclease AB 99.0 1.8E-08 3.8E-13 108.0 18.0 62 381-447 424-485 (655)
136 KOG0924 mRNA splicing factor A 99.0 2.3E-08 4.9E-13 102.7 17.4 236 178-446 367-615 (1042)
137 PF00176 SNF2_N: SNF2 family N 99.0 4.6E-09 1E-13 102.3 12.2 146 181-342 24-172 (299)
138 PRK08074 bifunctional ATP-depe 98.9 2.3E-08 5E-13 111.8 14.3 64 166-241 256-323 (928)
139 KOG0387 Transcription-coupled 98.8 3.9E-07 8.4E-12 95.4 19.4 142 167-325 205-363 (923)
140 TIGR02562 cas3_yersinia CRISPR 98.8 2.2E-07 4.8E-12 101.3 18.0 169 169-352 410-644 (1110)
141 KOG4150 Predicted ATP-dependen 98.7 1.6E-07 3.5E-12 94.8 12.8 270 159-446 278-575 (1034)
142 PF07517 SecA_DEAD: SecA DEAD- 98.7 1.4E-07 2.9E-12 89.8 11.7 130 164-310 74-210 (266)
143 PF02399 Herpes_ori_bp: Origin 98.7 7.1E-07 1.5E-11 95.0 17.7 230 183-442 50-320 (824)
144 PRK12900 secA preprotein trans 98.7 3.7E-07 8E-12 99.1 15.0 127 167-310 138-271 (1025)
145 PRK05298 excinuclease ABC subu 98.7 7.6E-07 1.7E-11 96.0 17.4 61 382-447 429-489 (652)
146 KOG0390 DNA repair protein, SN 98.7 7E-06 1.5E-10 87.7 23.9 160 167-342 238-414 (776)
147 PRK14873 primosome assembly pr 98.6 3E-07 6.4E-12 98.5 11.9 141 188-352 166-313 (665)
148 KOG0952 DNA/RNA helicase MER3/ 98.6 9.6E-09 2.1E-13 109.9 -0.7 148 165-327 925-1075(1230)
149 KOG0384 Chromodomain-helicase 98.6 2.6E-07 5.7E-12 100.5 10.1 152 166-342 369-535 (1373)
150 PRK11747 dinG ATP-dependent DN 98.5 6.8E-07 1.5E-11 97.0 12.8 63 166-240 24-95 (697)
151 TIGR00604 rad3 DNA repair heli 98.5 9.6E-07 2.1E-11 96.4 12.2 74 163-246 6-83 (705)
152 COG1199 DinG Rad3-related DNA 98.4 1.2E-06 2.6E-11 95.0 11.2 75 160-246 8-86 (654)
153 PRK15483 type III restriction- 98.4 2.1E-06 4.6E-11 93.9 10.7 143 183-344 60-240 (986)
154 KOG0392 SNF2 family DNA-depend 98.3 1E-05 2.2E-10 88.5 15.4 157 169-341 977-1137(1549)
155 KOG1000 Chromatin remodeling p 98.3 1.3E-05 2.8E-10 80.2 13.3 254 166-446 197-534 (689)
156 COG4889 Predicted helicase [Ge 98.2 1.2E-05 2.6E-10 85.3 11.2 136 158-310 152-317 (1518)
157 KOG0389 SNF2 family DNA-depend 98.1 8.6E-06 1.9E-10 85.5 9.1 163 168-351 400-572 (941)
158 PF13604 AAA_30: AAA domain; P 98.1 1E-05 2.2E-10 74.2 8.4 124 167-341 1-130 (196)
159 PF13086 AAA_11: AAA domain; P 98.1 1.6E-05 3.6E-10 74.0 10.1 74 167-245 1-75 (236)
160 KOG1002 Nucleotide excision re 97.9 4E-05 8.7E-10 76.7 8.3 126 168-311 185-330 (791)
161 PF02562 PhoH: PhoH-like prote 97.9 1.2E-05 2.5E-10 73.7 3.9 58 167-235 4-61 (205)
162 PF13872 AAA_34: P-loop contai 97.8 0.00018 3.9E-09 69.0 11.6 173 149-349 25-227 (303)
163 COG0610 Type I site-specific r 97.8 0.00015 3.2E-09 81.4 12.6 136 184-342 275-413 (962)
164 PF12340 DUF3638: Protein of u 97.8 0.0002 4.4E-09 66.2 11.1 150 147-311 5-186 (229)
165 KOG0386 Chromatin remodeling c 97.8 8.1E-05 1.7E-09 80.3 9.2 128 167-310 394-528 (1157)
166 PF14617 CMS1: U3-containing 9 97.8 8.5E-05 1.8E-09 70.0 8.3 86 221-307 124-211 (252)
167 KOG0953 Mitochondrial RNA heli 97.8 0.00016 3.5E-09 73.6 10.4 204 182-445 191-398 (700)
168 COG3587 Restriction endonuclea 97.7 7.1E-05 1.5E-09 79.6 7.8 145 183-348 75-248 (985)
169 PF09848 DUF2075: Uncharacteri 97.7 0.0011 2.3E-08 66.5 15.3 108 184-324 3-117 (352)
170 KOG1803 DNA helicase [Replicat 97.7 0.00015 3.4E-09 74.6 9.1 65 167-244 185-250 (649)
171 KOG1802 RNA helicase nonsense 97.7 0.00016 3.5E-09 74.9 9.2 85 158-258 401-485 (935)
172 KOG0391 SNF2 family DNA-depend 97.7 0.0003 6.5E-09 76.9 11.4 153 168-342 616-775 (1958)
173 TIGR01447 recD exodeoxyribonuc 97.7 0.00048 1E-08 73.3 12.6 143 169-341 147-295 (586)
174 KOG4439 RNA polymerase II tran 97.6 8.6E-05 1.9E-09 77.3 6.5 138 168-310 326-476 (901)
175 PRK10875 recD exonuclease V su 97.6 0.00034 7.4E-09 74.6 11.2 142 169-341 154-301 (615)
176 PRK13889 conjugal transfer rel 97.6 0.0034 7.4E-08 70.3 18.5 125 166-341 345-470 (988)
177 TIGR00376 DNA helicase, putati 97.6 0.00049 1.1E-08 74.1 11.6 67 166-245 156-223 (637)
178 KOG0921 Dosage compensation co 97.5 0.00034 7.4E-09 74.7 9.2 142 179-343 390-536 (1282)
179 KOG1132 Helicase of the DEAD s 97.5 0.00042 9.2E-09 74.1 9.9 83 167-249 21-136 (945)
180 COG0653 SecA Preprotein transl 97.5 0.0026 5.6E-08 68.9 15.3 127 169-310 80-213 (822)
181 TIGR01448 recD_rel helicase, p 97.5 0.001 2.2E-08 72.7 12.6 131 166-341 322-452 (720)
182 cd00079 HELICc Helicase superf 97.5 0.00069 1.5E-08 56.9 8.9 61 382-447 11-71 (131)
183 PRK10536 hypothetical protein; 97.5 0.0011 2.3E-08 62.7 10.8 60 164-234 56-115 (262)
184 PRK12901 secA preprotein trans 97.2 0.00057 1.2E-08 75.1 6.1 127 168-310 170-303 (1112)
185 PF13401 AAA_22: AAA domain; P 97.2 0.0014 3E-08 55.3 7.4 20 181-200 3-22 (131)
186 PF13245 AAA_19: Part of AAA d 97.1 0.0014 3.1E-08 50.2 5.7 60 175-243 2-62 (76)
187 PRK13826 Dtr system oriT relax 97.1 0.049 1.1E-06 61.7 19.8 125 166-341 380-505 (1102)
188 PF05970 PIF1: PIF1-like helic 97.0 0.002 4.3E-08 64.9 8.0 60 167-239 1-66 (364)
189 PRK14722 flhF flagellar biosyn 97.0 0.0058 1.3E-07 61.2 11.2 133 181-354 136-270 (374)
190 PRK12723 flagellar biosynthesi 97.0 0.035 7.7E-07 56.1 16.7 133 183-353 175-309 (388)
191 PRK06526 transposase; Provisio 97.0 0.002 4.3E-08 61.4 7.3 23 178-200 94-116 (254)
192 TIGR02768 TraA_Ti Ti-type conj 96.9 0.0093 2E-07 65.6 12.0 123 166-339 351-474 (744)
193 PRK08181 transposase; Validate 96.8 0.0055 1.2E-07 58.8 9.0 21 179-199 103-123 (269)
194 KOG1805 DNA replication helica 96.8 0.006 1.3E-07 66.3 9.6 137 150-311 656-810 (1100)
195 PRK04296 thymidine kinase; Pro 96.8 0.0018 3.8E-08 59.0 4.7 40 279-325 63-102 (190)
196 PRK06893 DNA replication initi 96.8 0.0038 8.3E-08 58.6 7.1 48 295-345 89-137 (229)
197 KOG0388 SNF2 family DNA-depend 96.8 0.0044 9.5E-08 65.1 7.9 158 170-349 570-741 (1185)
198 cd00009 AAA The AAA+ (ATPases 96.7 0.011 2.4E-07 50.0 9.4 18 182-199 19-36 (151)
199 TIGR02760 TraI_TIGR conjugativ 96.7 0.088 1.9E-06 63.7 19.8 230 167-445 429-678 (1960)
200 PF00580 UvrD-helicase: UvrD/R 96.7 0.0031 6.6E-08 61.6 6.5 104 168-288 1-104 (315)
201 PRK07764 DNA polymerase III su 96.7 0.0079 1.7E-07 66.4 9.9 45 296-346 119-163 (824)
202 PRK05642 DNA replication initi 96.6 0.0051 1.1E-07 58.0 7.0 45 296-344 96-141 (234)
203 COG3421 Uncharacterized protei 96.6 0.0031 6.7E-08 65.1 5.8 74 271-345 79-168 (812)
204 PRK06835 DNA replication prote 96.6 0.017 3.7E-07 57.2 10.6 50 295-347 244-294 (329)
205 COG1875 NYN ribonuclease and A 96.6 0.0084 1.8E-07 58.8 7.9 148 163-338 224-384 (436)
206 COG0553 HepA Superfamily II DN 96.5 0.013 2.9E-07 65.6 10.5 135 166-311 337-486 (866)
207 PRK14974 cell division protein 96.5 0.034 7.4E-07 55.1 12.1 55 296-354 221-276 (336)
208 PRK05703 flhF flagellar biosyn 96.4 0.2 4.4E-06 51.4 17.3 130 182-353 221-354 (424)
209 PRK06921 hypothetical protein; 96.4 0.047 1E-06 52.4 11.9 27 181-208 116-142 (266)
210 cd01120 RecA-like_NTPases RecA 96.4 0.0097 2.1E-07 51.7 6.7 17 185-201 2-18 (165)
211 PRK08727 hypothetical protein; 96.3 0.016 3.4E-07 54.6 8.1 49 296-347 92-141 (233)
212 PRK08116 hypothetical protein; 96.3 0.082 1.8E-06 50.8 13.1 50 295-348 176-227 (268)
213 TIGR02881 spore_V_K stage V sp 96.2 0.026 5.5E-07 54.1 9.3 19 182-200 42-60 (261)
214 TIGR03420 DnaA_homol_Hda DnaA 96.2 0.015 3.2E-07 54.1 7.5 20 181-200 37-56 (226)
215 PF00448 SRP54: SRP54-type pro 96.2 0.011 2.3E-07 54.1 6.3 82 296-395 82-166 (196)
216 PRK08084 DNA replication initi 96.2 0.012 2.5E-07 55.6 6.8 43 298-343 98-141 (235)
217 PRK11889 flhF flagellar biosyn 96.2 0.2 4.3E-06 50.6 15.5 100 279-395 303-403 (436)
218 COG1419 FlhF Flagellar GTP-bin 96.2 0.27 5.9E-06 49.4 16.5 133 181-353 202-335 (407)
219 smart00382 AAA ATPases associa 96.2 0.0073 1.6E-07 50.6 4.9 19 182-200 2-20 (148)
220 PRK14964 DNA polymerase III su 96.2 0.054 1.2E-06 56.4 11.7 45 295-345 114-158 (491)
221 PRK11331 5-methylcytosine-spec 96.1 0.015 3.3E-07 59.3 7.4 33 168-200 180-212 (459)
222 PRK07952 DNA replication prote 96.1 0.07 1.5E-06 50.5 11.4 51 295-348 160-211 (244)
223 PRK14721 flhF flagellar biosyn 96.1 0.13 2.9E-06 52.4 14.0 133 181-353 190-323 (420)
224 PF00308 Bac_DnaA: Bacterial d 96.0 0.017 3.8E-07 53.7 6.5 50 295-347 95-145 (219)
225 PRK07003 DNA polymerase III su 95.9 0.032 6.9E-07 60.3 9.0 17 185-201 41-57 (830)
226 PRK00411 cdc6 cell division co 95.9 0.044 9.5E-07 55.7 9.6 18 182-199 55-72 (394)
227 PRK12422 chromosomal replicati 95.9 0.042 9.1E-07 56.8 9.5 52 296-350 201-253 (445)
228 PF05127 Helicase_RecD: Helica 95.9 0.0025 5.5E-08 56.9 0.4 123 186-342 1-123 (177)
229 PRK14086 dnaA chromosomal repl 95.8 0.034 7.3E-07 59.1 8.6 50 295-347 375-425 (617)
230 COG1444 Predicted P-loop ATPas 95.8 0.043 9.4E-07 59.2 9.5 147 160-342 207-356 (758)
231 TIGR00596 rad1 DNA repair prot 95.7 0.027 6E-07 62.0 7.8 76 274-353 8-89 (814)
232 cd01124 KaiC KaiC is a circadi 95.7 0.045 9.8E-07 49.1 8.0 49 185-247 2-50 (187)
233 PRK09111 DNA polymerase III su 95.7 0.1 2.2E-06 55.9 11.6 40 295-339 130-169 (598)
234 PRK14087 dnaA chromosomal repl 95.7 0.048 1E-06 56.5 8.9 49 295-346 204-253 (450)
235 PF03354 Terminase_1: Phage Te 95.7 0.026 5.7E-07 59.0 7.1 126 170-311 1-137 (477)
236 TIGR00362 DnaA chromosomal rep 95.7 0.053 1.2E-06 55.4 9.2 49 297-348 199-248 (405)
237 PF05621 TniB: Bacterial TniB 95.6 0.036 7.9E-07 53.5 7.3 100 183-314 62-162 (302)
238 PF01695 IstB_IS21: IstB-like 95.6 0.015 3.3E-07 52.3 4.5 30 179-209 44-73 (178)
239 PRK12377 putative replication 95.6 0.12 2.5E-06 49.1 10.5 26 182-208 101-126 (248)
240 TIGR01547 phage_term_2 phage t 95.5 0.042 9.1E-07 56.0 7.9 138 184-344 3-142 (396)
241 PRK14952 DNA polymerase III su 95.5 0.11 2.4E-06 55.4 11.1 45 295-345 116-160 (584)
242 PRK00149 dnaA chromosomal repl 95.5 0.085 1.9E-06 54.7 10.2 49 296-347 210-259 (450)
243 PF00004 AAA: ATPase family as 95.5 0.056 1.2E-06 45.2 7.3 15 185-199 1-15 (132)
244 PRK06995 flhF flagellar biosyn 95.5 0.053 1.1E-06 56.3 8.3 19 182-200 256-274 (484)
245 PRK14959 DNA polymerase III su 95.5 0.063 1.4E-06 57.2 9.1 47 295-347 117-163 (624)
246 PRK12727 flagellar biosynthesi 95.5 0.75 1.6E-05 48.2 16.6 20 181-200 349-368 (559)
247 PRK07994 DNA polymerase III su 95.5 0.14 3.1E-06 55.0 11.7 43 296-344 118-160 (647)
248 KOG0989 Replication factor C, 95.5 0.039 8.4E-07 53.0 6.6 55 294-353 126-183 (346)
249 PRK05707 DNA polymerase III su 95.4 0.12 2.7E-06 51.1 10.5 34 168-201 4-41 (328)
250 PHA03368 DNA packaging termina 95.4 0.094 2E-06 55.7 9.9 137 180-344 252-392 (738)
251 PHA02533 17 large terminase pr 95.4 0.072 1.6E-06 56.2 9.2 150 167-342 59-210 (534)
252 PRK12323 DNA polymerase III su 95.4 0.17 3.8E-06 54.0 11.9 40 295-339 122-161 (700)
253 PRK08691 DNA polymerase III su 95.4 0.049 1.1E-06 58.6 7.9 18 184-201 40-57 (709)
254 PF13173 AAA_14: AAA domain 95.4 0.16 3.4E-06 42.9 9.6 38 297-341 61-98 (128)
255 PRK08903 DnaA regulatory inact 95.4 0.076 1.6E-06 49.6 8.4 44 297-344 90-133 (227)
256 COG1484 DnaC DNA replication p 95.3 0.063 1.4E-06 51.2 7.9 51 181-245 104-154 (254)
257 PRK14088 dnaA chromosomal repl 95.3 0.089 1.9E-06 54.4 9.5 52 297-351 194-246 (440)
258 PRK12402 replication factor C 95.3 0.11 2.4E-06 51.4 9.8 17 184-200 38-54 (337)
259 CHL00181 cbbX CbbX; Provisiona 95.3 0.13 2.8E-06 50.0 9.8 20 182-201 59-78 (287)
260 PRK14958 DNA polymerase III su 95.2 0.12 2.6E-06 54.3 10.2 39 296-339 118-156 (509)
261 PRK14956 DNA polymerase III su 95.2 0.11 2.4E-06 53.7 9.6 17 185-201 43-59 (484)
262 PRK05563 DNA polymerase III su 95.2 0.16 3.6E-06 54.0 11.3 45 295-345 117-161 (559)
263 KOG1131 RNA polymerase II tran 95.2 0.12 2.5E-06 53.0 9.3 74 164-246 13-90 (755)
264 PTZ00146 fibrillarin; Provisio 95.2 1 2.2E-05 43.7 15.4 18 184-201 134-151 (293)
265 PRK06731 flhF flagellar biosyn 95.1 0.7 1.5E-05 44.4 14.4 161 181-395 74-237 (270)
266 PRK14949 DNA polymerase III su 95.1 0.076 1.6E-06 58.6 8.6 45 296-346 118-162 (944)
267 cd01122 GP4d_helicase GP4d_hel 95.1 0.032 6.9E-07 53.6 5.2 27 179-205 27-53 (271)
268 PHA02544 44 clamp loader, smal 95.1 0.15 3.3E-06 50.1 10.1 40 145-199 18-60 (316)
269 PRK14950 DNA polymerase III su 95.1 0.18 4E-06 54.0 11.5 42 295-342 118-159 (585)
270 PRK09183 transposase/IS protei 95.1 0.12 2.5E-06 49.5 9.0 22 179-200 99-120 (259)
271 COG2805 PilT Tfp pilus assembl 95.0 0.054 1.2E-06 52.0 6.3 53 139-210 100-152 (353)
272 PRK06645 DNA polymerase III su 95.0 0.52 1.1E-05 49.5 14.2 43 295-343 126-168 (507)
273 PRK14712 conjugal transfer nic 95.0 0.13 2.9E-06 60.3 10.6 65 167-240 835-901 (1623)
274 PRK14951 DNA polymerase III su 95.0 0.44 9.5E-06 51.2 13.8 44 296-345 123-166 (618)
275 PHA03333 putative ATPase subun 95.0 0.43 9.2E-06 51.2 13.4 144 168-342 170-332 (752)
276 KOG0741 AAA+-type ATPase [Post 95.0 0.28 6.1E-06 50.6 11.5 144 150-348 494-655 (744)
277 PRK14955 DNA polymerase III su 95.0 0.46 9.9E-06 48.5 13.5 42 295-342 125-166 (397)
278 PRK14723 flhF flagellar biosyn 95.0 0.11 2.3E-06 56.8 9.1 132 182-353 185-317 (767)
279 COG1474 CDC6 Cdc6-related prot 95.0 0.35 7.5E-06 48.7 12.2 50 295-348 121-170 (366)
280 PRK14960 DNA polymerase III su 94.9 0.083 1.8E-06 56.5 8.0 18 184-201 39-56 (702)
281 PRK13709 conjugal transfer nic 94.9 0.26 5.7E-06 58.6 12.7 66 166-240 966-1033(1747)
282 COG4962 CpaF Flp pilus assembl 94.9 0.04 8.7E-07 53.9 5.1 62 163-238 153-215 (355)
283 TIGR02928 orc1/cdc6 family rep 94.9 0.16 3.5E-06 50.9 9.7 17 183-199 41-57 (365)
284 PRK14954 DNA polymerase III su 94.8 0.34 7.4E-06 52.1 12.4 32 295-330 125-156 (620)
285 PRK14969 DNA polymerase III su 94.7 0.53 1.1E-05 49.8 13.4 40 295-339 117-156 (527)
286 PRK14961 DNA polymerase III su 94.7 0.18 3.9E-06 50.7 9.5 41 296-342 118-158 (363)
287 PRK00771 signal recognition pa 94.7 0.19 4.2E-06 51.6 9.7 18 183-200 96-113 (437)
288 PTZ00112 origin recognition co 94.6 0.41 9E-06 52.8 12.2 28 296-324 868-895 (1164)
289 PRK14962 DNA polymerase III su 94.6 0.28 6E-06 51.1 10.7 44 295-344 115-158 (472)
290 TIGR02760 TraI_TIGR conjugativ 94.6 0.19 4.2E-06 60.9 10.7 64 166-240 1018-1085(1960)
291 PRK14965 DNA polymerase III su 94.5 0.77 1.7E-05 49.2 14.2 45 295-345 117-161 (576)
292 PRK08769 DNA polymerase III su 94.5 0.36 7.8E-06 47.6 10.8 37 165-201 2-45 (319)
293 TIGR03881 KaiC_arch_4 KaiC dom 94.5 0.25 5.5E-06 46.0 9.4 53 181-247 19-71 (229)
294 PHA00729 NTP-binding motif con 94.4 0.34 7.4E-06 45.1 9.8 75 274-352 59-138 (226)
295 KOG0921 Dosage compensation co 94.4 0.1 2.3E-06 56.5 7.0 9 28-36 1189-1197(1282)
296 PRK14957 DNA polymerase III su 94.3 0.25 5.4E-06 52.2 9.9 40 295-339 117-156 (546)
297 KOG1015 Transcription regulato 94.3 0.55 1.2E-05 51.5 12.2 144 182-342 696-859 (1567)
298 TIGR03877 thermo_KaiC_1 KaiC d 94.3 0.13 2.7E-06 48.5 6.9 54 181-248 20-73 (237)
299 TIGR02880 cbbX_cfxQ probable R 94.2 0.21 4.5E-06 48.5 8.3 20 181-200 57-76 (284)
300 PF06745 KaiC: KaiC; InterPro 94.1 0.18 3.9E-06 47.0 7.6 134 181-342 18-160 (226)
301 PRK11054 helD DNA helicase IV; 94.1 0.17 3.7E-06 55.1 8.3 71 166-247 195-265 (684)
302 PRK05973 replicative DNA helic 94.1 0.13 2.8E-06 48.4 6.4 85 149-247 22-115 (237)
303 KOG0742 AAA+-type ATPase [Post 94.1 0.096 2.1E-06 52.2 5.7 104 183-342 385-493 (630)
304 TIGR02785 addA_Gpos recombinat 94.1 0.13 2.8E-06 60.0 7.7 122 167-308 1-126 (1232)
305 PRK12724 flagellar biosynthesi 94.0 1.9 4.2E-05 43.9 15.0 57 296-353 298-356 (432)
306 PRK06067 flagellar accessory p 94.0 1.2 2.6E-05 41.7 12.8 53 181-247 24-76 (234)
307 PRK13894 conjugal transfer ATP 93.9 0.12 2.5E-06 51.1 6.1 65 159-236 126-191 (319)
308 TIGR00064 ftsY signal recognit 93.9 0.44 9.4E-06 45.9 9.9 59 296-354 153-214 (272)
309 PRK12726 flagellar biosynthesi 93.9 2 4.4E-05 43.2 14.6 19 182-200 206-224 (407)
310 KOG0991 Replication factor C, 93.8 0.12 2.6E-06 47.8 5.4 29 296-325 112-140 (333)
311 cd01126 TraG_VirD4 The TraG/Tr 93.8 0.086 1.9E-06 53.5 5.0 48 184-246 1-48 (384)
312 PRK12899 secA preprotein trans 93.7 0.65 1.4E-05 51.6 11.6 100 334-445 505-607 (970)
313 KOG1001 Helicase-like transcri 93.7 0.37 8E-06 52.2 9.7 140 185-346 155-296 (674)
314 PHA03372 DNA packaging termina 93.6 0.4 8.7E-06 50.5 9.4 131 181-342 201-337 (668)
315 PF05918 API5: Apoptosis inhib 93.5 0.021 4.6E-07 59.7 0.0 8 31-38 513-520 (556)
316 PRK08533 flagellar accessory p 93.5 0.44 9.5E-06 44.7 8.9 54 180-247 22-75 (230)
317 PRK14948 DNA polymerase III su 93.4 1 2.2E-05 48.7 12.5 44 295-344 119-162 (620)
318 COG4626 Phage terminase-like p 93.3 0.4 8.7E-06 49.9 8.9 149 167-340 61-223 (546)
319 TIGR00580 mfd transcription-re 93.3 0.63 1.4E-05 52.5 11.1 79 223-309 660-742 (926)
320 PRK13833 conjugal transfer pro 93.2 0.19 4.2E-06 49.5 6.2 58 168-236 129-187 (323)
321 PF02534 T4SS-DNA_transf: Type 93.2 0.13 2.8E-06 53.6 5.3 50 183-247 45-94 (469)
322 PRK10919 ATP-dependent DNA hel 93.1 0.17 3.6E-06 55.3 6.2 69 167-247 2-71 (672)
323 TIGR03499 FlhF flagellar biosy 93.1 0.12 2.7E-06 50.0 4.7 19 182-200 194-212 (282)
324 TIGR02868 CydC thiol reductant 93.1 0.11 2.3E-06 55.1 4.6 31 295-325 486-516 (529)
325 KOG0745 Putative ATP-dependent 93.1 0.078 1.7E-06 53.3 3.2 25 182-208 226-250 (564)
326 PLN03025 replication factor C 93.0 0.43 9.3E-06 47.1 8.5 18 183-200 35-52 (319)
327 PF07728 AAA_5: AAA domain (dy 93.0 0.019 4.2E-07 49.0 -1.0 16 184-199 1-16 (139)
328 PRK10689 transcription-repair 93.0 0.91 2E-05 52.4 12.0 93 223-327 809-905 (1147)
329 PF05496 RuvB_N: Holliday junc 92.9 0.16 3.6E-06 47.0 4.9 16 184-199 52-67 (233)
330 PTZ00454 26S protease regulato 92.9 0.27 5.8E-06 50.1 6.9 53 144-199 141-196 (398)
331 PRK06964 DNA polymerase III su 92.8 0.78 1.7E-05 45.7 9.9 33 169-201 3-40 (342)
332 KOG0344 ATP-dependent RNA heli 92.8 4.7 0.0001 42.2 15.6 137 186-347 361-501 (593)
333 COG1132 MdlB ABC-type multidru 92.8 0.18 3.9E-06 53.9 5.9 31 295-325 481-511 (567)
334 PRK07940 DNA polymerase III su 92.8 0.7 1.5E-05 47.0 9.7 48 295-348 115-162 (394)
335 PRK06871 DNA polymerase III su 92.8 1.8 3.9E-05 42.8 12.3 40 295-339 105-144 (325)
336 cd00984 DnaB_C DnaB helicase C 92.7 0.37 8E-06 45.2 7.2 126 181-325 12-155 (242)
337 PRK11823 DNA repair protein Ra 92.7 0.39 8.5E-06 49.7 7.9 53 181-247 79-131 (446)
338 cd01121 Sms Sms (bacterial rad 92.7 0.23 4.9E-06 50.1 6.0 91 181-310 81-171 (372)
339 cd03239 ABC_SMC_head The struc 92.6 0.13 2.8E-06 46.2 3.8 43 295-340 114-156 (178)
340 PRK13897 type IV secretion sys 92.6 0.2 4.4E-06 53.6 5.8 49 183-246 159-207 (606)
341 PRK13342 recombination factor 92.6 0.63 1.4E-05 47.7 9.3 18 183-200 37-54 (413)
342 PRK13341 recombination factor 92.6 0.59 1.3E-05 51.2 9.5 18 183-200 53-70 (725)
343 TIGR01074 rep ATP-dependent DN 92.6 0.23 5.1E-06 54.2 6.4 69 168-247 2-70 (664)
344 PRK14963 DNA polymerase III su 92.6 0.76 1.6E-05 48.3 9.9 43 295-343 114-156 (504)
345 cd00561 CobA_CobO_BtuR ATP:cor 92.5 0.88 1.9E-05 40.0 8.8 53 295-351 93-147 (159)
346 PRK08939 primosomal protein Dn 92.5 0.81 1.8E-05 44.9 9.5 26 182-208 156-181 (306)
347 PF05876 Terminase_GpA: Phage 92.5 0.11 2.5E-06 55.2 3.8 125 167-311 16-148 (557)
348 TIGR00678 holB DNA polymerase 92.5 0.38 8.3E-06 43.4 6.8 41 295-341 94-134 (188)
349 TIGR01425 SRP54_euk signal rec 92.5 2 4.4E-05 44.0 12.6 16 184-199 102-117 (429)
350 COG0470 HolB ATPase involved i 92.4 0.55 1.2E-05 46.0 8.4 48 295-348 107-154 (325)
351 PRK14971 DNA polymerase III su 92.4 1 2.2E-05 48.6 10.8 43 295-343 119-161 (614)
352 PRK06647 DNA polymerase III su 92.3 0.76 1.6E-05 49.0 9.6 43 295-343 117-159 (563)
353 TIGR03015 pepcterm_ATPase puta 92.3 3.5 7.5E-05 39.2 13.5 34 167-200 23-61 (269)
354 PF13177 DNA_pol3_delta2: DNA 92.3 0.5 1.1E-05 41.7 7.1 47 296-348 101-147 (162)
355 TIGR01075 uvrD DNA helicase II 92.2 0.3 6.5E-06 53.8 6.8 72 166-248 3-74 (715)
356 PHA02244 ATPase-like protein 92.2 1 2.3E-05 45.0 9.8 23 177-199 114-136 (383)
357 PRK05986 cob(I)alamin adenolsy 92.2 1.4 3.1E-05 39.9 9.8 54 295-352 113-168 (191)
358 KOG0738 AAA+-type ATPase [Post 92.2 0.53 1.2E-05 46.9 7.6 66 298-363 305-382 (491)
359 cd03115 SRP The signal recogni 92.1 1.5 3.1E-05 38.9 10.0 55 296-354 81-136 (173)
360 COG3973 Superfamily I DNA and 92.1 1.1 2.5E-05 47.0 10.1 92 150-248 187-285 (747)
361 TIGR01241 FtsH_fam ATP-depende 92.1 0.26 5.5E-06 51.9 5.8 17 183-199 89-105 (495)
362 COG1435 Tdk Thymidine kinase [ 92.1 0.69 1.5E-05 41.8 7.6 49 274-324 60-108 (201)
363 TIGR02782 TrbB_P P-type conjug 92.0 0.35 7.7E-06 47.2 6.3 58 168-236 117-175 (299)
364 PRK08451 DNA polymerase III su 92.0 1.4 3E-05 46.6 10.9 40 295-339 115-154 (535)
365 PRK04195 replication factor C 92.0 0.49 1.1E-05 49.6 7.7 18 182-199 39-56 (482)
366 PRK05416 glmZ(sRNA)-inactivati 91.9 1.3 2.9E-05 42.9 10.0 36 404-440 244-285 (288)
367 PRK11773 uvrD DNA-dependent he 91.9 0.28 6.2E-06 54.0 6.0 72 166-248 8-79 (721)
368 PRK05896 DNA polymerase III su 91.8 0.65 1.4E-05 49.5 8.4 45 296-346 118-162 (605)
369 TIGR00643 recG ATP-dependent D 91.8 2.6 5.7E-05 45.7 13.3 92 223-326 448-551 (630)
370 TIGR01650 PD_CobS cobaltochela 91.6 0.78 1.7E-05 45.2 8.1 22 178-199 60-81 (327)
371 PTZ00146 fibrillarin; Provisio 91.5 0.4 8.7E-06 46.4 5.9 33 164-199 106-138 (293)
372 PF03668 ATP_bind_2: P-loop AT 91.5 1.7 3.7E-05 41.8 10.1 38 403-440 240-283 (284)
373 CHL00176 ftsH cell division pr 91.5 1 2.2E-05 48.7 9.6 18 182-199 216-233 (638)
374 COG2256 MGS1 ATPase related to 91.5 0.95 2.1E-05 45.4 8.5 19 183-201 49-67 (436)
375 TIGR00959 ffh signal recogniti 91.5 1.6 3.4E-05 44.9 10.5 17 184-200 101-117 (428)
376 KOG0298 DEAD box-containing he 91.4 0.44 9.5E-06 53.8 6.6 153 181-342 373-550 (1394)
377 PRK14953 DNA polymerase III su 91.3 1 2.2E-05 47.1 9.2 41 295-341 117-157 (486)
378 TIGR03600 phage_DnaB phage rep 91.3 0.79 1.7E-05 47.1 8.3 26 180-205 192-217 (421)
379 PRK12901 secA preprotein trans 91.3 1.4 3.1E-05 49.3 10.5 98 335-442 566-666 (1112)
380 TIGR02525 plasmid_TraJ plasmid 91.2 0.4 8.6E-06 48.3 5.8 25 182-207 149-173 (372)
381 PRK06904 replicative DNA helic 91.2 1.2 2.7E-05 46.4 9.6 149 182-346 221-387 (472)
382 COG2909 MalT ATP-dependent tra 91.1 0.4 8.6E-06 52.2 5.9 44 296-343 128-171 (894)
383 PRK11034 clpA ATP-dependent Cl 91.1 0.89 1.9E-05 50.1 8.8 19 182-200 207-225 (758)
384 PRK10436 hypothetical protein; 91.1 0.57 1.2E-05 48.6 7.0 25 182-207 218-242 (462)
385 TIGR00763 lon ATP-dependent pr 91.1 0.87 1.9E-05 50.6 8.9 18 182-199 347-364 (775)
386 KOG0333 U5 snRNP-like RNA heli 91.1 0.85 1.8E-05 47.0 7.9 70 223-302 517-590 (673)
387 PF03796 DnaB_C: DnaB-like hel 91.0 0.75 1.6E-05 43.8 7.3 142 182-341 19-179 (259)
388 PRK09112 DNA polymerase III su 91.0 2.8 6E-05 42.0 11.6 44 295-344 139-182 (351)
389 PRK13850 type IV secretion sys 91.0 0.36 7.9E-06 52.3 5.6 50 182-246 139-188 (670)
390 PRK04537 ATP-dependent RNA hel 90.9 1.5 3.3E-05 47.0 10.2 73 224-306 258-334 (572)
391 TIGR02524 dot_icm_DotB Dot/Icm 90.9 0.19 4.1E-06 50.4 3.2 18 181-198 133-150 (358)
392 TIGR00767 rho transcription te 90.8 0.68 1.5E-05 46.8 7.0 19 180-198 166-184 (415)
393 PF03969 AFG1_ATPase: AFG1-lik 90.8 4.1 9E-05 40.9 12.6 110 182-346 62-172 (362)
394 TIGR03689 pup_AAA proteasome A 90.8 0.61 1.3E-05 48.9 6.8 52 145-199 179-233 (512)
395 PRK06305 DNA polymerase III su 90.6 2.3 4.9E-05 44.2 10.9 37 296-337 120-156 (451)
396 PRK13851 type IV secretion sys 90.6 0.28 6.2E-06 48.8 4.1 45 178-236 158-202 (344)
397 TIGR00635 ruvB Holliday juncti 90.6 0.34 7.3E-06 47.3 4.6 17 183-199 31-47 (305)
398 KOG0733 Nuclear AAA ATPase (VC 90.6 0.69 1.5E-05 48.7 6.8 51 296-347 603-660 (802)
399 PRK07471 DNA polymerase III su 90.6 1.8 3.9E-05 43.6 9.8 41 295-340 139-179 (365)
400 PRK13900 type IV secretion sys 90.5 0.59 1.3E-05 46.4 6.2 46 178-237 156-201 (332)
401 PRK14970 DNA polymerase III su 90.5 2.9 6.3E-05 42.0 11.4 42 295-342 106-147 (367)
402 TIGR03878 thermo_KaiC_2 KaiC d 90.4 1.5 3.3E-05 41.8 8.8 26 181-206 35-60 (259)
403 TIGR00631 uvrb excinuclease AB 90.4 4.8 0.0001 43.8 13.4 120 222-353 441-564 (655)
404 PRK03992 proteasome-activating 90.3 0.47 1E-05 48.2 5.5 17 183-199 166-182 (389)
405 PRK10917 ATP-dependent DNA hel 90.3 4.5 9.8E-05 44.3 13.5 110 224-345 472-593 (681)
406 KOG0058 Peptide exporter, ABC 90.3 0.5 1.1E-05 50.6 5.7 41 295-340 620-660 (716)
407 TIGR03880 KaiC_arch_3 KaiC dom 90.2 1 2.2E-05 41.8 7.2 53 181-247 15-67 (224)
408 PRK08699 DNA polymerase III su 90.2 3.4 7.3E-05 40.9 11.2 34 169-202 3-41 (325)
409 PRK00440 rfc replication facto 90.1 1.9 4E-05 42.2 9.5 17 184-200 40-56 (319)
410 PRK10416 signal recognition pa 90.1 3.6 7.7E-05 40.6 11.2 59 296-354 195-256 (318)
411 TIGR01073 pcrA ATP-dependent D 89.9 0.63 1.4E-05 51.4 6.4 72 166-248 3-74 (726)
412 PRK10867 signal recognition pa 89.8 3.3 7.1E-05 42.6 11.0 17 184-200 102-118 (433)
413 TIGR02237 recomb_radB DNA repa 89.7 0.8 1.7E-05 41.9 6.1 25 181-205 11-35 (209)
414 TIGR00708 cobA cob(I)alamin ad 89.7 2.9 6.2E-05 37.3 9.2 54 295-352 95-150 (173)
415 PRK07004 replicative DNA helic 89.6 0.89 1.9E-05 47.3 7.0 146 181-346 212-377 (460)
416 KOG0733 Nuclear AAA ATPase (VC 89.6 1.3 2.8E-05 46.8 7.8 59 138-199 180-240 (802)
417 TIGR01242 26Sp45 26S proteasom 89.6 0.67 1.5E-05 46.6 5.9 18 182-199 156-173 (364)
418 PRK07133 DNA polymerase III su 89.5 2.7 5.9E-05 45.9 10.7 45 295-345 116-160 (725)
419 PF06733 DEAD_2: DEAD_2; Inte 89.5 0.29 6.3E-06 43.6 2.9 46 266-311 112-159 (174)
420 PRK13822 conjugal transfer cou 89.5 0.62 1.3E-05 50.4 5.8 50 182-246 224-273 (641)
421 COG2804 PulE Type II secretory 89.5 0.37 8E-06 49.7 3.9 41 168-209 242-284 (500)
422 PRK13880 conjugal transfer cou 89.3 0.56 1.2E-05 50.7 5.4 49 182-245 175-223 (636)
423 COG2874 FlaH Predicted ATPases 89.2 9 0.00019 35.4 12.1 154 183-367 29-195 (235)
424 PRK04328 hypothetical protein; 89.2 1.4 3E-05 41.8 7.4 54 181-248 22-75 (249)
425 PTZ00361 26 proteosome regulat 89.1 1.1 2.3E-05 46.3 7.0 19 181-199 216-234 (438)
426 KOG1133 Helicase of the DEAD s 89.1 0.43 9.2E-06 50.7 4.0 43 167-209 15-61 (821)
427 PRK09087 hypothetical protein; 89.1 1.1 2.5E-05 41.8 6.7 42 300-346 90-131 (226)
428 PRK10263 DNA translocase FtsK; 89.0 2.3 5E-05 48.9 9.9 27 183-209 1011-1037(1355)
429 PTZ00293 thymidine kinase; Pro 89.0 1.6 3.4E-05 40.3 7.3 18 182-199 4-21 (211)
430 COG0630 VirB11 Type IV secreto 88.9 0.51 1.1E-05 46.4 4.3 58 165-236 125-183 (312)
431 COG3972 Superfamily I DNA and 88.8 0.93 2E-05 46.5 6.1 79 156-247 152-230 (660)
432 PRK10865 protein disaggregatio 88.8 1.3 2.8E-05 49.8 7.9 18 183-200 200-217 (857)
433 TIGR02203 MsbA_lipidA lipid A 88.6 0.58 1.3E-05 50.0 4.9 41 295-339 485-525 (571)
434 TIGR01420 pilT_fam pilus retra 88.6 0.75 1.6E-05 45.9 5.4 19 181-199 121-139 (343)
435 COG3267 ExeA Type II secretory 88.6 2.3 5E-05 40.2 8.1 29 178-207 46-75 (269)
436 PRK04841 transcriptional regul 88.6 4.7 0.0001 45.5 12.5 44 297-344 121-164 (903)
437 COG4555 NatA ABC-type Na+ tran 88.5 1.4 3E-05 40.2 6.4 55 295-353 149-203 (245)
438 cd01394 radB RadB. The archaea 88.5 1 2.2E-05 41.5 5.9 23 182-204 19-41 (218)
439 KOG0732 AAA+-type ATPase conta 88.5 0.92 2E-05 50.9 6.3 52 144-198 261-315 (1080)
440 PRK05748 replicative DNA helic 88.5 1.7 3.7E-05 45.0 8.2 147 181-345 202-367 (448)
441 PRK07993 DNA polymerase III su 88.4 7.6 0.00017 38.6 12.3 40 295-339 106-145 (334)
442 KOG0331 ATP-dependent RNA heli 88.4 1.5 3.3E-05 45.7 7.5 72 222-303 340-415 (519)
443 PRK13876 conjugal transfer cou 88.4 0.52 1.1E-05 51.1 4.3 50 182-246 144-193 (663)
444 TIGR02204 MsbA_rel ABC transpo 88.3 0.52 1.1E-05 50.5 4.3 31 295-325 492-522 (576)
445 TIGR03375 type_I_sec_LssB type 88.3 0.35 7.7E-06 53.1 3.1 31 295-325 617-647 (694)
446 cd01128 rho_factor Transcripti 88.3 1.3 2.8E-05 42.1 6.5 19 179-197 13-31 (249)
447 PRK11192 ATP-dependent RNA hel 88.2 2.4 5.1E-05 43.7 9.0 70 224-303 246-319 (434)
448 PRK04837 ATP-dependent RNA hel 88.2 1.7 3.7E-05 44.6 7.9 72 224-305 256-331 (423)
449 TIGR00602 rad24 checkpoint pro 88.2 2.3 5E-05 45.9 8.9 45 145-200 81-128 (637)
450 PRK10590 ATP-dependent RNA hel 88.2 3 6.6E-05 43.3 9.8 70 224-303 246-319 (456)
451 TIGR03346 chaperone_ClpB ATP-d 88.1 1.6 3.5E-05 49.1 8.1 19 182-200 194-212 (852)
452 KOG2228 Origin recognition com 88.0 3.2 6.8E-05 40.9 8.9 58 284-342 124-181 (408)
453 PTZ00110 helicase; Provisional 87.9 9.7 0.00021 40.6 13.5 73 222-304 376-452 (545)
454 PF02572 CobA_CobO_BtuR: ATP:c 87.9 5.1 0.00011 35.7 9.6 53 295-351 94-148 (172)
455 PRK09376 rho transcription ter 87.8 2.3 4.9E-05 43.0 8.1 30 169-198 153-185 (416)
456 PRK08840 replicative DNA helic 87.8 2.7 5.9E-05 43.7 9.1 49 297-346 329-382 (464)
457 PRK07399 DNA polymerase III su 87.8 3.8 8.3E-05 40.3 9.7 50 284-340 112-161 (314)
458 TIGR02767 TraG-Ti Ti-type conj 87.8 0.83 1.8E-05 49.2 5.4 49 183-246 212-260 (623)
459 PF03237 Terminase_6: Terminas 87.8 3.8 8.3E-05 40.5 10.0 110 186-317 1-117 (384)
460 PRK06090 DNA polymerase III su 87.7 5.4 0.00012 39.3 10.6 41 295-341 106-146 (319)
461 cd03276 ABC_SMC6_euk Eukaryoti 87.7 4.4 9.4E-05 37.0 9.4 51 295-346 129-179 (198)
462 TIGR02639 ClpA ATP-dependent C 87.6 4.9 0.00011 44.5 11.4 19 182-200 203-221 (731)
463 TIGR02688 conserved hypothetic 87.6 1.6 3.5E-05 44.5 6.9 49 152-200 172-227 (449)
464 TIGR00665 DnaB replicative DNA 87.5 1.3 2.9E-05 45.6 6.6 143 181-340 194-353 (434)
465 TIGR01243 CDC48 AAA family ATP 87.5 1.5 3.2E-05 48.6 7.3 17 183-199 488-504 (733)
466 KOG0744 AAA+-type ATPase [Post 87.5 1.8 3.9E-05 42.2 6.8 114 181-313 176-325 (423)
467 COG0513 SrmB Superfamily II DN 87.4 3.2 6.9E-05 43.9 9.5 68 225-302 275-346 (513)
468 COG2109 BtuR ATP:corrinoid ade 87.4 3 6.5E-05 37.5 7.8 56 296-353 121-176 (198)
469 cd01130 VirB11-like_ATPase Typ 87.4 0.52 1.1E-05 42.5 3.1 33 167-199 9-42 (186)
470 PF05918 API5: Apoptosis inhib 87.2 0.19 4E-06 52.8 0.1 7 4-10 460-466 (556)
471 cd00267 ABC_ATPase ABC (ATP-bi 87.1 0.59 1.3E-05 40.7 3.2 49 296-348 97-145 (157)
472 PF05729 NACHT: NACHT domain 87.0 6.9 0.00015 33.6 10.1 16 184-199 2-17 (166)
473 PRK00080 ruvB Holliday junctio 87.0 1.1 2.4E-05 44.3 5.5 18 183-200 52-69 (328)
474 PRK11174 cysteine/glutathione 86.9 0.42 9E-06 51.4 2.6 31 295-325 501-531 (588)
475 cd03268 ABC_BcrA_bacitracin_re 86.9 2.1 4.6E-05 39.1 7.0 50 295-348 142-191 (208)
476 PRK13764 ATPase; Provisional 86.8 0.95 2.1E-05 48.4 5.1 26 181-207 256-281 (602)
477 COG1219 ClpX ATP-dependent pro 86.8 0.4 8.7E-06 46.5 2.0 27 181-209 96-122 (408)
478 PRK08006 replicative DNA helic 86.8 4 8.7E-05 42.6 9.6 149 182-346 224-389 (471)
479 COG1197 Mfd Transcription-repa 86.7 6.3 0.00014 44.9 11.4 132 171-310 731-886 (1139)
480 KOG2543 Origin recognition com 86.6 7 0.00015 39.1 10.5 46 296-345 114-161 (438)
481 TIGR01243 CDC48 AAA family ATP 86.5 2.6 5.7E-05 46.6 8.6 18 181-198 211-228 (733)
482 TIGR00614 recQ_fam ATP-depende 86.4 3.1 6.7E-05 43.4 8.7 74 224-307 227-304 (470)
483 TIGR02538 type_IV_pilB type IV 86.4 0.73 1.6E-05 49.2 4.0 37 170-207 302-340 (564)
484 PHA00012 I assembly protein 86.3 13 0.00028 36.7 12.0 23 185-207 4-26 (361)
485 KOG0731 AAA+-type ATPase conta 86.2 3.1 6.7E-05 45.4 8.5 65 281-348 389-464 (774)
486 TIGR02858 spore_III_AA stage I 86.0 5.8 0.00013 38.1 9.6 16 183-198 112-127 (270)
487 TIGR03345 VI_ClpV1 type VI sec 86.0 1.6 3.4E-05 49.0 6.5 28 172-199 192-225 (852)
488 PRK11776 ATP-dependent RNA hel 85.9 4.4 9.6E-05 42.1 9.5 72 225-306 244-319 (460)
489 COG4907 Predicted membrane pro 85.8 0.62 1.3E-05 46.9 2.9 26 60-85 569-594 (595)
490 PRK08058 DNA polymerase III su 85.8 2.2 4.8E-05 42.3 6.9 41 295-341 108-148 (329)
491 cd03247 ABCC_cytochrome_bd The 85.8 2.9 6.2E-05 37.2 7.1 31 295-325 114-144 (178)
492 COG2812 DnaX DNA polymerase II 85.8 1.1 2.4E-05 46.8 4.9 32 295-330 117-148 (515)
493 TIGR03345 VI_ClpV1 type VI sec 85.7 2 4.4E-05 48.2 7.2 15 185-199 599-613 (852)
494 KOG1806 DEAD box containing he 85.6 1.5 3.3E-05 48.7 5.8 72 164-246 735-806 (1320)
495 PRK09361 radB DNA repair and r 85.6 1.7 3.7E-05 40.3 5.7 25 181-205 22-46 (225)
496 TIGR03522 GldA_ABC_ATP gliding 85.6 8 0.00017 37.7 10.6 54 295-353 149-202 (301)
497 KOG3089 Predicted DEAD-box-con 85.5 1.4 3.1E-05 40.3 4.7 31 274-304 197-227 (271)
498 PRK11176 lipid transporter ATP 85.5 1.1 2.5E-05 47.9 5.0 42 295-340 496-537 (582)
499 COG1221 PspF Transcriptional r 85.4 2.4 5.3E-05 42.9 6.9 144 172-362 93-244 (403)
500 PRK10789 putative multidrug tr 85.4 0.86 1.9E-05 48.8 4.0 142 179-339 338-507 (569)
No 1
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.8e-64 Score=498.55 Aligned_cols=333 Identities=61% Similarity=0.924 Sum_probs=312.4
Q ss_pred cccccccCCCCCCCCCcccccCCCCCCccCCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCC
Q 013173 115 VAEEENTGINFDAYEDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSG 194 (448)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~f~~l~L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsG 194 (448)
.+...+++++|++|++++++.++.++|+++..|.+..|.+.|..++...+|.+|||+|+++||.+..|+|+++||+||||
T Consensus 44 ~~~~~~~~~nfd~~~~i~v~~~G~~~p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsG 123 (482)
T KOG0335|consen 44 FFLGISTGINFDKYNDIPVKVSGRDVPPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSG 123 (482)
T ss_pred hhhccchhhccCCccceeeeccCCccCCCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCc
Confidence 33336889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHHhcCc
Q 013173 195 KTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGV 274 (448)
Q Consensus 195 KT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~ 274 (448)
||.+|++|++..+++.++..........+|++|||+||||||.|+++++++|.+..+++++..|||.+...+.+.+.++|
T Consensus 124 KT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gc 203 (482)
T KOG0335|consen 124 KTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGC 203 (482)
T ss_pred chHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCc
Confidence 99999999999999987766554455578999999999999999999999999999999999999999999999999999
Q ss_pred cEEEeChHHHHHHHhcccccCCCeeEEEEcCCccccc-CCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhh
Q 013173 275 DILVATPGRLVDLLERARVSLQMIRYLALDEADRMLD-MGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDF 353 (448)
Q Consensus 275 ~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~-~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~ 353 (448)
||+|||||+|.++++.+++.|.+++||||||||+|+| ++|.++|+.|+..+.+++...+|++|||||+|.+++.++..|
T Consensus 204 dIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~f 283 (482)
T KOG0335|consen 204 DILVATPGRLKDLIERGKISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADF 283 (482)
T ss_pred cEEEecCchhhhhhhcceeehhhCcEEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHH
Confidence 9999999999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred hcC-cEEEEecccccccCceeEEEEEecccchHHHHHHHHHHHHhcCC--CCCCCcEEEEeCchhhHHHHHHHHHHCCCC
Q 013173 354 LAN-YIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGV--HGKQALTLVFVETKKGADALEHWLYMNGFP 430 (448)
Q Consensus 354 l~~-~~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~--~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~ 430 (448)
+.+ |+++.|++++.+..++.|.+.+|.+.+|...|+++|........ .....+++|||+|++.|+.|+.+|...+++
T Consensus 284 l~~~yi~laV~rvg~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~ 363 (482)
T KOG0335|consen 284 LKDNYIFLAVGRVGSTSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYP 363 (482)
T ss_pred hhccceEEEEeeeccccccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCC
Confidence 996 99999999999999999999999999999999999997652211 112348999999999999999999999999
Q ss_pred eEEecCCCCHHHHHHhh
Q 013173 431 ATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 431 ~~~iHg~~~q~eR~~~l 447 (448)
+..|||+.+|.||+++|
T Consensus 364 ~~sIhg~~tq~er~~al 380 (482)
T KOG0335|consen 364 AKSIHGDRTQIEREQAL 380 (482)
T ss_pred ceeecchhhhhHHHHHH
Confidence 99999999999999987
No 2
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-60 Score=479.30 Aligned_cols=291 Identities=46% Similarity=0.716 Sum_probs=272.2
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCce
Q 013173 146 TFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPL 225 (448)
Q Consensus 146 ~f~~l~L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~ 225 (448)
.|.+++|++++...++..+|.+|||||.+.||+++.|+|++..|.||||||++|++|++.++..... ...+..+|+
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~----~~~~~~~P~ 167 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQG----KLSRGDGPI 167 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccc----cccCCCCCe
Confidence 8999999999999999999999999999999999999999999999999999999999999987421 234567899
Q ss_pred EEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEcC
Q 013173 226 ALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDE 305 (448)
Q Consensus 226 ~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDE 305 (448)
+|||+||||||.|+..++.+|+....++++++|||.+...|.+.+.++++|+|||||||+++++.+.++|+.|.||||||
T Consensus 168 vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDE 247 (519)
T KOG0331|consen 168 VLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDE 247 (519)
T ss_pred EEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEecccc--cccCceeEEEEEecccc
Q 013173 306 ADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVG--SSTDLIVQRVEFVHESD 383 (448)
Q Consensus 306 ah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~--~~~~~i~q~~~~~~~~~ 383 (448)
||+||+|||+++|++|+..+. +..+|++++|||||.+++.++.+||.+|+.+.++... ....++.|.++.++...
T Consensus 248 ADrMldmGFe~qI~~Il~~i~---~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~ 324 (519)
T KOG0331|consen 248 ADRMLDMGFEPQIRKILSQIP---RPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETA 324 (519)
T ss_pred HHhhhccccHHHHHHHHHhcC---CCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHH
Confidence 999999999999999999993 4456999999999999999999999999999988664 56689999999999999
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCCHHHHHHhh
Q 013173 384 KRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 384 k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
|...|.++|.... .+.+.++||||+|++.|++|+..|...+++|.+||||++|+||+.+|
T Consensus 325 K~~~l~~lL~~~~----~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L 384 (519)
T KOG0331|consen 325 KLRKLGKLLEDIS----SDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVL 384 (519)
T ss_pred HHHHHHHHHHHHh----ccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHH
Confidence 9999999999876 12378999999999999999999999999999999999999999987
No 3
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3e-57 Score=428.86 Aligned_cols=284 Identities=37% Similarity=0.553 Sum_probs=271.0
Q ss_pred cCCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCC
Q 013173 143 AVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTV 222 (448)
Q Consensus 143 ~~~~f~~l~L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~ 222 (448)
...+|.+|++.+.|.+++...++.+||++|+++||.++.|+|+|..|+||||||.+|+|||++++++++ .
T Consensus 59 ~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p----------~ 128 (476)
T KOG0330|consen 59 SFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEP----------K 128 (476)
T ss_pred hhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCC----------C
Confidence 356899999999999999999999999999999999999999999999999999999999999999854 2
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhc-ccccCCCeeEE
Q 013173 223 YPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLER-ARVSLQMIRYL 301 (448)
Q Consensus 223 ~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~-~~~~l~~v~~l 301 (448)
.+++|||+||||||.||.+.+..++...+++++++.||.....|...+.+.+||||||||+|++++++ +.+++..++||
T Consensus 129 ~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~L 208 (476)
T KOG0330|consen 129 LFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFL 208 (476)
T ss_pred CceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHH
Confidence 37899999999999999999999999999999999999999999999999999999999999999995 56789999999
Q ss_pred EEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEecccccccCceeEEEEEecc
Q 013173 302 ALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHE 381 (448)
Q Consensus 302 VlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~ 381 (448)
|+||||++|++.|.+.+.+|++.+ |.++|+++||||+|..+.++....+.+|+.+.+.....+.+.+.|+|.+++.
T Consensus 209 VlDEADrlLd~dF~~~ld~ILk~i----p~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~ 284 (476)
T KOG0330|consen 209 VLDEADRLLDMDFEEELDYILKVI----PRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPG 284 (476)
T ss_pred hhchHHhhhhhhhHHHHHHHHHhc----CccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccc
Confidence 999999999999999999999999 8899999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCCHHHHHHhh
Q 013173 382 SDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 382 ~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
.+|...|+.+|+... +..+||||+|+..++.++-+|+..|+.|..+||+|+|..|.-++
T Consensus 285 k~K~~yLV~ll~e~~-------g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l 343 (476)
T KOG0330|consen 285 KDKDTYLVYLLNELA-------GNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGAL 343 (476)
T ss_pred cccchhHHHHHHhhc-------CCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHH
Confidence 999999999999775 77899999999999999999999999999999999999998664
No 4
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=7.5e-55 Score=456.66 Aligned_cols=299 Identities=44% Similarity=0.695 Sum_probs=271.5
Q ss_pred cCCCCCCccCCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhccc
Q 013173 135 TSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQ 214 (448)
Q Consensus 135 ~~~~~~~~~~~~f~~l~L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~ 214 (448)
..+.++|.|+.+|++++|++.++++|.++||.+|||+|.++||.+++|+|+|++||||||||++|++|++..+......
T Consensus 120 ~~g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~- 198 (545)
T PTZ00110 120 IAGENVPKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLL- 198 (545)
T ss_pred ecCCCCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccc-
Confidence 3578899999999999999999999999999999999999999999999999999999999999999999888654321
Q ss_pred CCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhccccc
Q 013173 215 RPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVS 294 (448)
Q Consensus 215 ~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~ 294 (448)
....+|.+|||+||||||.|+++.+++|+...++++.+++||.+...+...+..+++|||+||++|++++.....+
T Consensus 199 ----~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~ 274 (545)
T PTZ00110 199 ----RYGDGPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTN 274 (545)
T ss_pred ----cCCCCcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCC
Confidence 1234689999999999999999999999988899999999999999999999999999999999999999988888
Q ss_pred CCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhc-CcEEEEecccc-cccCce
Q 013173 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLA-NYIFLAVGRVG-SSTDLI 372 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~-~~~~i~v~~~~-~~~~~i 372 (448)
+.++++|||||||+|++++|++++..|+..+ ++.+|+++||||+|.+++.++..++. +++.+.++... ....++
T Consensus 275 l~~v~~lViDEAd~mld~gf~~~i~~il~~~----~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i 350 (545)
T PTZ00110 275 LRRVTYLVLDEADRMLDMGFEPQIRKIVSQI----RPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNI 350 (545)
T ss_pred hhhCcEEEeehHHhhhhcchHHHHHHHHHhC----CCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCe
Confidence 9999999999999999999999999999998 67899999999999999999999886 58888877665 344678
Q ss_pred eEEEEEecccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCCHHHHHHhh
Q 013173 373 VQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 373 ~q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
.|.+..++..+|...|.++|..... ...++||||+|++.|+.|+..|...++++.++||++++++|++++
T Consensus 351 ~q~~~~~~~~~k~~~L~~ll~~~~~-----~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il 420 (545)
T PTZ00110 351 KQEVFVVEEHEKRGKLKMLLQRIMR-----DGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVL 420 (545)
T ss_pred eEEEEEEechhHHHHHHHHHHHhcc-----cCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHH
Confidence 8888888888899999988877532 267899999999999999999999999999999999999999876
No 5
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.6e-55 Score=456.22 Aligned_cols=284 Identities=41% Similarity=0.641 Sum_probs=263.4
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCc
Q 013173 145 NTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYP 224 (448)
Q Consensus 145 ~~f~~l~L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~ 224 (448)
..|++++|++.+++++.++||.+|||+|..+||.++.|+|++++|+||||||++|++|+|+.+..... ...+
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~--------~~~~ 100 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVE--------RKYV 100 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccc--------cCCC
Confidence 67999999999999999999999999999999999999999999999999999999999999754210 1111
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhcccC-CcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEE
Q 013173 225 LALILAPTRELSSQIHVEAKKFSYQT-GVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLAL 303 (448)
Q Consensus 225 ~~lil~PtreL~~qi~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVl 303 (448)
.+|||+||||||.|+++++.+|+... ++++++++||.+...+...+.+++||||||||||+++++++.++++.+++||+
T Consensus 101 ~aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVl 180 (513)
T COG0513 101 SALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVL 180 (513)
T ss_pred ceEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEe
Confidence 19999999999999999999999888 79999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEeccccc--ccCceeEEEEEecc
Q 013173 304 DEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGS--STDLIVQRVEFVHE 381 (448)
Q Consensus 304 DEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~--~~~~i~q~~~~~~~ 381 (448)
||||+|+++||.+++..|+..+ +.++|+++||||+|..+..+++.++.+|..+.+..... +...+.|++..++.
T Consensus 181 DEADrmLd~Gf~~~i~~I~~~~----p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~ 256 (513)
T COG0513 181 DEADRMLDMGFIDDIEKILKAL----PPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVES 256 (513)
T ss_pred ccHhhhhcCCCHHHHHHHHHhC----CcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCC
Confidence 9999999999999999999999 77999999999999999999999999999988885555 88999999999988
Q ss_pred cc-hHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCCHHHHHHhh
Q 013173 382 SD-KRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 382 ~~-k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
.+ |...|..++.... ..++||||+|+..|+.|+..|...|++|..|||+|+|++|+++|
T Consensus 257 ~~~k~~~L~~ll~~~~-------~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l 316 (513)
T COG0513 257 EEEKLELLLKLLKDED-------EGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRAL 316 (513)
T ss_pred HHHHHHHHHHHHhcCC-------CCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHH
Confidence 76 9999999998764 44699999999999999999999999999999999999999886
No 6
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=5.2e-55 Score=426.65 Aligned_cols=311 Identities=39% Similarity=0.648 Sum_probs=288.2
Q ss_pred CCcccccCCCCCCccCCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHh
Q 013173 129 EDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIM 208 (448)
Q Consensus 129 ~~~~v~~~~~~~~~~~~~f~~l~L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~ 208 (448)
+++.+...|..+|.|+.+|++.+|+.++++.+...+|..|||||..+||+.+..+|+|..|.||||||++|++|+|..|.
T Consensus 229 edynis~kg~~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~Is 308 (673)
T KOG0333|consen 229 EDYNISIKGGRLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWIS 308 (673)
T ss_pred cceeeeecCCCCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHH
Confidence 34566788999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred hhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHH
Q 013173 209 REQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLL 288 (448)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l 288 (448)
..++... ......+|.++||+|||||++||.++..+|+..++++++.++||.+..++--.+..+|+|+|||||+|++.|
T Consensus 309 slP~~~~-~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~L 387 (673)
T KOG0333|consen 309 SLPPMAR-LENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSL 387 (673)
T ss_pred cCCCcch-hhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHH
Confidence 6543221 123467899999999999999999999999999999999999999999998889999999999999999999
Q ss_pred hcccccCCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCC---------------------CcEEEEEeccCchHHH
Q 013173 289 ERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPG---------------------MRQTMLFSATFPKEIQ 347 (448)
Q Consensus 289 ~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~---------------------~~q~i~~SAT~~~~v~ 347 (448)
++..+-++.+.|||+||||+|+||||++++..|+.++.....+ -+|+++||||+|+.+.
T Consensus 388 enr~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~ve 467 (673)
T KOG0333|consen 388 ENRYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVE 467 (673)
T ss_pred HHHHHHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHH
Confidence 9999999999999999999999999999999999999533211 1899999999999999
Q ss_pred HHHHhhhcCcEEEEecccccccCceeEEEEEecccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHC
Q 013173 348 RLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN 427 (448)
Q Consensus 348 ~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~ 427 (448)
.+++.||.+|+.+.++..+.+.+.+.|.++.+.+.+|...|+++|.... ..++|||+|+++.|+.||+.|.+.
T Consensus 468 rlar~ylr~pv~vtig~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~~-------~ppiIIFvN~kk~~d~lAk~LeK~ 540 (673)
T KOG0333|consen 468 RLARSYLRRPVVVTIGSAGKPTPRVEQKVEMVSEDEKRKKLIEILESNF-------DPPIIIFVNTKKGADALAKILEKA 540 (673)
T ss_pred HHHHHHhhCCeEEEeccCCCCccchheEEEEecchHHHHHHHHHHHhCC-------CCCEEEEEechhhHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999874 788999999999999999999999
Q ss_pred CCCeEEecCCCCHHHHHHhh
Q 013173 428 GFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 428 g~~~~~iHg~~~q~eR~~~l 447 (448)
|++|+.|||+.+|++|+.+|
T Consensus 541 g~~~~tlHg~k~qeQRe~aL 560 (673)
T KOG0333|consen 541 GYKVTTLHGGKSQEQRENAL 560 (673)
T ss_pred cceEEEeeCCccHHHHHHHH
Confidence 99999999999999999887
No 7
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.4e-55 Score=400.05 Aligned_cols=286 Identities=31% Similarity=0.481 Sum_probs=268.8
Q ss_pred CccCCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCC
Q 013173 141 PPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSR 220 (448)
Q Consensus 141 ~~~~~~f~~l~L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~ 220 (448)
..++.+|++++|+++|++.+...||.+|+.+|+.|||.|+.|+|++++|+.|+|||.+|.+.+|+.+.-.
T Consensus 23 ~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~---------- 92 (400)
T KOG0328|consen 23 VKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDIS---------- 92 (400)
T ss_pred cccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccc----------
Confidence 3456789999999999999999999999999999999999999999999999999999999998766322
Q ss_pred CCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeE
Q 013173 221 TVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRY 300 (448)
Q Consensus 221 ~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~ 300 (448)
....++|||+|||||+.|+.+.+..++...++++..+.||.+..++++++..|++++.+|||+++++++...+....|++
T Consensus 93 ~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkm 172 (400)
T KOG0328|consen 93 VRETQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKM 172 (400)
T ss_pred cceeeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeE
Confidence 22357999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEecccccccCceeEEEEEec
Q 013173 301 LALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVH 380 (448)
Q Consensus 301 lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~ 380 (448)
|||||||.||+.||.+++..|+..+ |+..|++++|||+|.++.++..+|+.+|+.+.+.+.+.+.+.|.|+|..++
T Consensus 173 lVLDEaDemL~kgfk~Qiydiyr~l----p~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve 248 (400)
T KOG0328|consen 173 LVLDEADEMLNKGFKEQIYDIYRYL----PPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVE 248 (400)
T ss_pred EEeccHHHHHHhhHHHHHHHHHHhC----CCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeec
Confidence 9999999999999999999999999 889999999999999999999999999999999999999999999999887
Q ss_pred ccc-hHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCCHHHHHHhh
Q 013173 381 ESD-KRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 381 ~~~-k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
.++ |+..|.++..... -.+++|||||++.++.|.+.|+..++.+.++||||.|+||++++
T Consensus 249 ~EewKfdtLcdLYd~Lt-------ItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im 309 (400)
T KOG0328|consen 249 KEEWKFDTLCDLYDTLT-------ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIM 309 (400)
T ss_pred hhhhhHhHHHHHhhhhe-------hheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHH
Confidence 655 9999999988764 45589999999999999999999999999999999999999886
No 8
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.2e-55 Score=426.64 Aligned_cols=286 Identities=37% Similarity=0.545 Sum_probs=264.9
Q ss_pred CCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCC
Q 013173 144 VNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVY 223 (448)
Q Consensus 144 ~~~f~~l~L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~ 223 (448)
..+|.+++|+..|++++..+||.+|||||..+||..+.|+|+++||-||||||++|.+|+|.+++-.+. +...
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk-------~~~~ 252 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPK-------KVAA 252 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcc-------cCcc
Confidence 458999999999999999999999999999999999999999999999999999999999999875432 2345
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcc-cccCCCeeEEE
Q 013173 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA-RVSLQMIRYLA 302 (448)
Q Consensus 224 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~-~~~l~~v~~lV 302 (448)
.++|||+|||||+.|++.+.++++.++.+.++++.||.+...|...|+..|||+|||||||+|+|.+. .+++++|.+||
T Consensus 253 TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLv 332 (691)
T KOG0338|consen 253 TRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLV 332 (691)
T ss_pred eeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEE
Confidence 67999999999999999999999999999999999999999999999999999999999999999885 57899999999
Q ss_pred EcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEecccccccCceeEEEEEec--
Q 013173 303 LDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVH-- 380 (448)
Q Consensus 303 lDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~-- 380 (448)
+||||+||+.||.+++..|+..| ++.+|+|+||||++.+|.+|+.-.|.+|+.++++........++|.|+.+.
T Consensus 333 lDEADRMLeegFademnEii~lc----pk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~ 408 (691)
T KOG0338|consen 333 LDEADRMLEEGFADEMNEIIRLC----PKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPK 408 (691)
T ss_pred echHHHHHHHHHHHHHHHHHHhc----cccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccc
Confidence 99999999999999999999999 999999999999999999999999999999999988888889999877664
Q ss_pred -ccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCCHHHHHHhh
Q 013173 381 -ESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 381 -~~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
+.++...|..++...+ ...||||+.|++.|..|.-.|.-.|+++..+||.++|++|.++|
T Consensus 409 re~dRea~l~~l~~rtf-------~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL 469 (691)
T KOG0338|consen 409 REGDREAMLASLITRTF-------QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESL 469 (691)
T ss_pred cccccHHHHHHHHHHhc-------ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHH
Confidence 3456677777777765 66799999999999999999999999999999999999998876
No 9
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.6e-54 Score=417.45 Aligned_cols=301 Identities=41% Similarity=0.671 Sum_probs=283.4
Q ss_pred ccccCCCCCCccCCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhh
Q 013173 132 PVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQ 211 (448)
Q Consensus 132 ~v~~~~~~~~~~~~~f~~l~L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~ 211 (448)
.+.+++..+|.|+.+|+.++++..|+.++++.-|.+|||+|.+++|..+.|+|++-.|.||||||.+|++|++.+++.+.
T Consensus 210 nlrv~g~s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~ 289 (731)
T KOG0339|consen 210 NLRVSGSSPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQP 289 (731)
T ss_pred cceeccCCCCCCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchh
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999998776
Q ss_pred cccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcc
Q 013173 212 YVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA 291 (448)
Q Consensus 212 ~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~ 291 (448)
... .+.+|.+||++||||||.||+.++++|++.++++++++|||.+.-+|...|..++.|||||||||++++.-+
T Consensus 290 eL~-----~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmK 364 (731)
T KOG0339|consen 290 ELK-----PGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMK 364 (731)
T ss_pred hhc-----CCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhh
Confidence 433 477899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEecccccccCc
Q 013173 292 RVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDL 371 (448)
Q Consensus 292 ~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~ 371 (448)
..++.++.||||||||+|.++||+++++.|..++ .+++|+|+|||||+..|..+++++|.+|+.+..+.++.....
T Consensus 365 atn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hi----rpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~d 440 (731)
T KOG0339|consen 365 ATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHI----RPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANED 440 (731)
T ss_pred cccceeeeEEEEechhhhhccccHHHHHHHHhhc----CCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccc
Confidence 9999999999999999999999999999999999 889999999999999999999999999999999999999999
Q ss_pred eeEEEEEecc-cchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCCHHHHHHhh
Q 013173 372 IVQRVEFVHE-SDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 372 i~q~~~~~~~-~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
|+|.+.++.. ..|..+|+.-|..... .+++||||.-+..++.++..|...+|+|..+||+|.|.+|.++|
T Consensus 441 ITQ~V~V~~s~~~Kl~wl~~~L~~f~S------~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~l 511 (731)
T KOG0339|consen 441 ITQTVSVCPSEEKKLNWLLRHLVEFSS------EGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVL 511 (731)
T ss_pred hhheeeeccCcHHHHHHHHHHhhhhcc------CCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHH
Confidence 9999988854 5677888877776542 67899999999999999999999999999999999999999887
No 10
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=2.6e-54 Score=407.92 Aligned_cols=299 Identities=37% Similarity=0.659 Sum_probs=281.0
Q ss_pred cCCCCCCccCCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhccc
Q 013173 135 TSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQ 214 (448)
Q Consensus 135 ~~~~~~~~~~~~f~~l~L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~ 214 (448)
+.|+.+|+|+.+|.++.++..+++.+++.|+.+|||+|.+-+|.+++|||+|-.|-||||||++|.||++...+......
T Consensus 160 veGd~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~l 239 (610)
T KOG0341|consen 160 VEGDDIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMML 239 (610)
T ss_pred eeCCCCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcC
Confidence 67999999999999999999999999999999999999999999999999999999999999999999998877654322
Q ss_pred CCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcc------cCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHH
Q 013173 215 RPRGSRTVYPLALILAPTRELSSQIHVEAKKFSY------QTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLL 288 (448)
Q Consensus 215 ~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~------~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l 288 (448)
...+..+|..||+||+||||.|+++.+..|+. ...++..+++||.++.+|...+.+|++|+|||||||.++|
T Consensus 240 --Pf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL 317 (610)
T KOG0341|consen 240 --PFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDML 317 (610)
T ss_pred --ccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHH
Confidence 24567889999999999999999999998853 3457889999999999999999999999999999999999
Q ss_pred hcccccCCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEecccccc
Q 013173 289 ERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSS 368 (448)
Q Consensus 289 ~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~ 368 (448)
.+..++|.-++||++||||+|+|+||+++|+.|+.++ +..+|+++||||+|..+|.+++..|-.|+.+.|++.+..
T Consensus 318 ~KK~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~F----K~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAA 393 (610)
T KOG0341|consen 318 AKKIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFF----KGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAA 393 (610)
T ss_pred HHhhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHH----hhhhheeeeeccccHHHHHHHHhhcccceEEeccccccc
Confidence 9999999999999999999999999999999999999 778999999999999999999999999999999999999
Q ss_pred cCceeEEEEEecccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCCHHHHHHhh
Q 013173 369 TDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 369 ~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
.-++.|.+++|+.+.|.-.|++-|+.. ..++||||+.+..++.+++||--.|+.+.+|||+.+|++|..+|
T Consensus 394 sldViQevEyVkqEaKiVylLeCLQKT--------~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai 464 (610)
T KOG0341|consen 394 SLDVIQEVEYVKQEAKIVYLLECLQKT--------SPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAI 464 (610)
T ss_pred chhHHHHHHHHHhhhhhhhHHHHhccC--------CCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHH
Confidence 999999999999999999999988875 67899999999999999999999999999999999999999876
No 11
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.3e-52 Score=397.18 Aligned_cols=297 Identities=38% Similarity=0.593 Sum_probs=267.8
Q ss_pred CCCCCCccCCCcccC-CCCHHHHHHHHHCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhccc
Q 013173 136 SGENVPPAVNTFAEI-DLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQ 214 (448)
Q Consensus 136 ~~~~~~~~~~~f~~l-~L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~ 214 (448)
....+|.|+.+|++. ...++++++|++.||.+|||+|.++||++++|.|++.+|+||+|||++|++|-+.++......
T Consensus 210 ekrpIPnP~ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~- 288 (629)
T KOG0336|consen 210 EKRPIPNPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKR- 288 (629)
T ss_pred CcccCCCCcCcHHHHHhhhHHHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchh-
Confidence 445688999999974 688999999999999999999999999999999999999999999999999988777644322
Q ss_pred CCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhccccc
Q 013173 215 RPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVS 294 (448)
Q Consensus 215 ~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~ 294 (448)
.....+|.+|+++|||||+.|+.-+.+++.+. +.+.+++|||.+..+|+..+.++.+|+|+||++|.++...+.++
T Consensus 289 ---~~qr~~p~~lvl~ptreLalqie~e~~kysyn-g~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~ 364 (629)
T KOG0336|consen 289 ---REQRNGPGVLVLTPTRELALQIEGEVKKYSYN-GLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVIN 364 (629)
T ss_pred ---hhccCCCceEEEeccHHHHHHHHhHHhHhhhc-CcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeee
Confidence 12466789999999999999999999998764 78899999999999999999999999999999999999999999
Q ss_pred CCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEeccccccc-Ccee
Q 013173 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSST-DLIV 373 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~-~~i~ 373 (448)
|.+|.||||||||+||||||+++|++|+..+ .+++|+++.|||||+.|..|+..|+.+|+.+.++..+... ..+.
T Consensus 365 l~siTYlVlDEADrMLDMgFEpqIrkilldi----RPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVk 440 (629)
T KOG0336|consen 365 LASITYLVLDEADRMLDMGFEPQIRKILLDI----RPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVK 440 (629)
T ss_pred eeeeEEEEecchhhhhcccccHHHHHHhhhc----CCcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeee
Confidence 9999999999999999999999999999999 8899999999999999999999999999999999888654 6677
Q ss_pred EEEEEecccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCCHHHHHHhh
Q 013173 374 QRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 374 q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
|.+....+.+|.+.+..++.... ...++||||.++-.|+.|...|+..||.+-+|||+..|.+|+.+|
T Consensus 441 Q~i~v~~d~~k~~~~~~f~~~ms------~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al 508 (629)
T KOG0336|consen 441 QNIIVTTDSEKLEIVQFFVANMS------SNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMAL 508 (629)
T ss_pred eeEEecccHHHHHHHHHHHHhcC------CCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHH
Confidence 88866677778766666666543 367899999999999999999999999999999999999999886
No 12
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=3.8e-51 Score=397.93 Aligned_cols=288 Identities=32% Similarity=0.498 Sum_probs=262.5
Q ss_pred cCCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCC
Q 013173 143 AVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTV 222 (448)
Q Consensus 143 ~~~~f~~l~L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~ 222 (448)
....|+++.|++..+++|+++||.++|++|+.+||.++.|+|+++.|.||||||+||++|+++.+++.+...+ .
T Consensus 80 ~~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r------~ 153 (543)
T KOG0342|consen 80 TTFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPR------N 153 (543)
T ss_pred hhhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCC------C
Confidence 3467889999999999999999999999999999999999999999999999999999999999988765432 4
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhcccC-CcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhccc-ccCCCeeE
Q 013173 223 YPLALILAPTRELSSQIHVEAKKFSYQT-GVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERAR-VSLQMIRY 300 (448)
Q Consensus 223 ~~~~lil~PtreL~~qi~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~-~~l~~v~~ 300 (448)
...+||||||||||.|++.+++++.+.. ++.+.+++||+......+.+.++|+|+|||||||+|+|++.. +.+.++++
T Consensus 154 ~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~ 233 (543)
T KOG0342|consen 154 GTGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKC 233 (543)
T ss_pred CeeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccce
Confidence 5679999999999999999999998777 899999999999999999999999999999999999999865 45678899
Q ss_pred EEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhc-CcEEEEecccc--cccCceeEEEE
Q 013173 301 LALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLA-NYIFLAVGRVG--SSTDLIVQRVE 377 (448)
Q Consensus 301 lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~-~~~~i~v~~~~--~~~~~i~q~~~ 377 (448)
+|+||||++|++||++.|+.|+..+ |..+|+++||||.+++|+++++..|. +++++.+.... .+.+.+.|.|.
T Consensus 234 lvlDEADrlLd~GF~~di~~Ii~~l----pk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyv 309 (543)
T KOG0342|consen 234 LVLDEADRLLDIGFEEDVEQIIKIL----PKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYV 309 (543)
T ss_pred eEeecchhhhhcccHHHHHHHHHhc----cccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEE
Confidence 9999999999999999999999999 88999999999999999999999887 58888776554 56688999998
Q ss_pred EecccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCCHHHHHHh
Q 013173 378 FVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIE 446 (448)
Q Consensus 378 ~~~~~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~ 446 (448)
.++...++..|+.+|+.+.. ..++||||.|+..+..+++.|+...++|..|||+++|..|..+
T Consensus 310 v~~~~~~f~ll~~~LKk~~~------~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~ 372 (543)
T KOG0342|consen 310 VAPSDSRFSLLYTFLKKNIK------RYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTST 372 (543)
T ss_pred eccccchHHHHHHHHHHhcC------CceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchH
Confidence 88888888999999998862 3789999999999999999999999999999999999998754
No 13
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=8.8e-50 Score=416.97 Aligned_cols=303 Identities=35% Similarity=0.583 Sum_probs=271.6
Q ss_pred ccccCCCCCCccCCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhh
Q 013173 132 PVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQ 211 (448)
Q Consensus 132 ~v~~~~~~~~~~~~~f~~l~L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~ 211 (448)
.+.+.|...|.|+.+|++++|++.++++|.++||.+|||+|.++||.++.|+|++++||||||||++|++|++..+....
T Consensus 108 ~i~~~g~~~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~ 187 (518)
T PLN00206 108 EIHVKGEAVPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIR 187 (518)
T ss_pred CCEecCCCCCchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhc
Confidence 34457889999999999999999999999999999999999999999999999999999999999999999999887532
Q ss_pred cccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcc
Q 013173 212 YVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA 291 (448)
Q Consensus 212 ~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~ 291 (448)
... .....+|++|||+||||||.|+.+.++.+....++++..++||.....+...+..+++|+|+||++|.+++.+.
T Consensus 188 ~~~---~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~ 264 (518)
T PLN00206 188 SGH---PSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKH 264 (518)
T ss_pred ccc---ccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcC
Confidence 111 11235689999999999999999999999888889999999999999998888899999999999999999988
Q ss_pred cccCCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEecccccccCc
Q 013173 292 RVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDL 371 (448)
Q Consensus 292 ~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~ 371 (448)
.+.++++++|||||||+|++++|.+++..|+..+ + ..|+++||||++.++..++..++.+++.+.++........
T Consensus 265 ~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l----~-~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~ 339 (518)
T PLN00206 265 DIELDNVSVLVLDEVDCMLERGFRDQVMQIFQAL----S-QPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKA 339 (518)
T ss_pred CccchheeEEEeecHHHHhhcchHHHHHHHHHhC----C-CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcc
Confidence 8899999999999999999999999999999887 2 4699999999999999999999999999998877777778
Q ss_pred eeEEEEEecccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHH-CCCCeEEecCCCCHHHHHHhh
Q 013173 372 IVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYM-NGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 372 i~q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~-~g~~~~~iHg~~~q~eR~~~l 447 (448)
+.|.+.++....|...|.+++..... ...++||||+++..|+.|++.|.. .++++..+||+|++.+|+.++
T Consensus 340 v~q~~~~~~~~~k~~~l~~~l~~~~~-----~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il 411 (518)
T PLN00206 340 VKQLAIWVETKQKKQKLFDILKSKQH-----FKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVM 411 (518)
T ss_pred eeEEEEeccchhHHHHHHHHHHhhcc-----cCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHH
Confidence 88888888888888888888875431 146799999999999999999975 699999999999999999876
No 14
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=7.1e-51 Score=399.47 Aligned_cols=287 Identities=31% Similarity=0.501 Sum_probs=263.7
Q ss_pred cCCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCC
Q 013173 143 AVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTV 222 (448)
Q Consensus 143 ~~~~f~~l~L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~ 222 (448)
.+..|++|+|+...++.|+..+|.+||.+|+.+||..+.|+|++..|.||||||+||++|+|..|...+... ..
T Consensus 67 ~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~------~D 140 (758)
T KOG0343|consen 67 TIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSP------TD 140 (758)
T ss_pred hhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCC------CC
Confidence 356799999999999999999999999999999999999999999999999999999999999998876433 33
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcc-cccCCCeeEE
Q 013173 223 YPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA-RVSLQMIRYL 301 (448)
Q Consensus 223 ~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~-~~~l~~v~~l 301 (448)
+.-||||+||||||.|+++.+.+++....+...+++||.........+. .++|||||||||+++|+.. .++..++.+|
T Consensus 141 GlGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~-~mNILVCTPGRLLQHmde~~~f~t~~lQmL 219 (758)
T KOG0343|consen 141 GLGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERIS-QMNILVCTPGRLLQHMDENPNFSTSNLQML 219 (758)
T ss_pred CceeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhh-cCCeEEechHHHHHHhhhcCCCCCCcceEE
Confidence 4559999999999999999999999999999999999999777666655 4899999999999999875 5678999999
Q ss_pred EEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEecc--cccccCceeEEEEEe
Q 013173 302 ALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGR--VGSSTDLIVQRVEFV 379 (448)
Q Consensus 302 VlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~--~~~~~~~i~q~~~~~ 379 (448)
||||||+||+|||...+..|++.+ |..+||++||||-+..+.+|++-.+.||.++.+.. ...++.++.|+|+.+
T Consensus 220 vLDEADR~LDMGFk~tL~~Ii~~l----P~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v 295 (758)
T KOG0343|consen 220 VLDEADRMLDMGFKKTLNAIIENL----PKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIV 295 (758)
T ss_pred EeccHHHHHHHhHHHHHHHHHHhC----ChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEE
Confidence 999999999999999999999999 99999999999999999999999999999998873 356778999999999
Q ss_pred cccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHC--CCCeEEecCCCCHHHHHHhh
Q 013173 380 HESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN--GFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 380 ~~~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~--g~~~~~iHg~~~q~eR~~~l 447 (448)
+..+|+..|..++..+. ..++|||+.|++++..+++.++.. |++..++||.|+|..|-.+.
T Consensus 296 ~l~~Ki~~L~sFI~shl-------k~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~ 358 (758)
T KOG0343|consen 296 PLEDKIDMLWSFIKSHL-------KKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVY 358 (758)
T ss_pred ehhhHHHHHHHHHHhcc-------ccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHH
Confidence 99999999999999876 678999999999999999999876 89999999999999998763
No 15
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.8e-49 Score=404.90 Aligned_cols=291 Identities=32% Similarity=0.502 Sum_probs=261.2
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCc
Q 013173 145 NTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYP 224 (448)
Q Consensus 145 ~~f~~l~L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~ 224 (448)
.+|++++|++.+++++.++||..|||+|+++||.++.|+|++++||||||||++|++|+++.++...... ......+
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~---~~~~~~~ 84 (423)
T PRK04837 8 QKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPE---DRKVNQP 84 (423)
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhccccc---ccccCCc
Confidence 5899999999999999999999999999999999999999999999999999999999999987643211 1123468
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEc
Q 013173 225 LALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALD 304 (448)
Q Consensus 225 ~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlD 304 (448)
++|||+||+|||.|+++.+..+....++++..++||.....+...+..+++|||+||++|.+++....+.++++++||||
T Consensus 85 ~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViD 164 (423)
T PRK04837 85 RALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLD 164 (423)
T ss_pred eEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEe
Confidence 89999999999999999999999888999999999999988888888899999999999999999888899999999999
Q ss_pred CCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEecccccccCceeEEEEEecccch
Q 013173 305 EADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDK 384 (448)
Q Consensus 305 Eah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~~k 384 (448)
|||+|++++|..++..++..+.. ...+|+++||||++..+..++..++.++..+.+.........+.+.+.+....+|
T Consensus 165 Ead~l~~~~f~~~i~~i~~~~~~--~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~~~~k 242 (423)
T PRK04837 165 EADRMFDLGFIKDIRWLFRRMPP--ANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPSNEEK 242 (423)
T ss_pred cHHHHhhcccHHHHHHHHHhCCC--ccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeCCHHHH
Confidence 99999999999999999988832 2457899999999999999999999999998887666666778887777777788
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCCHHHHHHhh
Q 013173 385 RSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 385 ~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
...|..++.... ..++||||+++..|+.|++.|...|+++..+||+|++.+|.+++
T Consensus 243 ~~~l~~ll~~~~-------~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l 298 (423)
T PRK04837 243 MRLLQTLIEEEW-------PDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRIL 298 (423)
T ss_pred HHHHHHHHHhcC-------CCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHH
Confidence 888888876532 56799999999999999999999999999999999999999876
No 16
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=7.4e-49 Score=404.88 Aligned_cols=287 Identities=39% Similarity=0.639 Sum_probs=258.9
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCce
Q 013173 146 TFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPL 225 (448)
Q Consensus 146 ~f~~l~L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~ 225 (448)
+|++++|++.+.++|.+++|.+|||+|+++||.++.++|++++||||||||++|++|+++.+....... .....++
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~----~~~~~~~ 77 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHA----KGRRPVR 77 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhccccc----ccCCCce
Confidence 689999999999999999999999999999999999999999999999999999999999986543211 1123468
Q ss_pred EEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEcC
Q 013173 226 ALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDE 305 (448)
Q Consensus 226 ~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDE 305 (448)
+|||+||+|||.|+.+.++.+....++++..++||.+...+...+..+++|+|+||++|++++....+.++++++|||||
T Consensus 78 aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDE 157 (456)
T PRK10590 78 ALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDE 157 (456)
T ss_pred EEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeec
Confidence 99999999999999999999998889999999999999988888888899999999999999988888899999999999
Q ss_pred CcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEecccccccCceeEEEEEecccchH
Q 013173 306 ADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKR 385 (448)
Q Consensus 306 ah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~~k~ 385 (448)
||+|++++|...++.++..+ +..+|+++||||++.++..++..++.++..+.+.........+.+.+..++...|.
T Consensus 158 ah~ll~~~~~~~i~~il~~l----~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~ 233 (456)
T PRK10590 158 ADRMLDMGFIHDIRRVLAKL----PAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKR 233 (456)
T ss_pred HHHHhccccHHHHHHHHHhC----CccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCHHHHH
Confidence 99999999999999999988 77889999999999999999999999999888877767778888888888877777
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCCHHHHHHhh
Q 013173 386 SHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 386 ~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
..|..++.... ..++||||+++..|+.|++.|...++.+..+||+|++.+|.+++
T Consensus 234 ~~l~~l~~~~~-------~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l 288 (456)
T PRK10590 234 ELLSQMIGKGN-------WQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRAL 288 (456)
T ss_pred HHHHHHHHcCC-------CCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHH
Confidence 66666665432 56799999999999999999999999999999999999999876
No 17
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=9.5e-49 Score=412.04 Aligned_cols=291 Identities=35% Similarity=0.546 Sum_probs=258.2
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCc
Q 013173 145 NTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYP 224 (448)
Q Consensus 145 ~~f~~l~L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~ 224 (448)
.+|++++|++.|+++|.++||.+|||+|+++||.++.|+|++++||||||||++|++|+++.++...... ......+
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~---~~~~~~~ 85 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALA---DRKPEDP 85 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccc---ccccCCc
Confidence 4699999999999999999999999999999999999999999999999999999999999887543111 1122357
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcc-cccCCCeeEEEE
Q 013173 225 LALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA-RVSLQMIRYLAL 303 (448)
Q Consensus 225 ~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~-~~~l~~v~~lVl 303 (448)
++|||+||+|||.|+++.+.+|....++++..++||.....+...+..+++|||+||++|++++... .+.+..+++|||
T Consensus 86 raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lVi 165 (572)
T PRK04537 86 RALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVL 165 (572)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEe
Confidence 8999999999999999999999988899999999999999888888888999999999999999875 467899999999
Q ss_pred cCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEecccccccCceeEEEEEecccc
Q 013173 304 DEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESD 383 (448)
Q Consensus 304 DEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~~ 383 (448)
||||+|++++|..++..|+..+.. ...+|+++||||++..+..++..++.++..+.+.........+.+.+......+
T Consensus 166 DEAh~lld~gf~~~i~~il~~lp~--~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~ 243 (572)
T PRK04537 166 DEADRMFDLGFIKDIRFLLRRMPE--RGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPADEE 243 (572)
T ss_pred cCHHHHhhcchHHHHHHHHHhccc--ccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecCHHH
Confidence 999999999999999999998821 126899999999999999999999998887777666666677888888888888
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCCHHHHHHhh
Q 013173 384 KRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 384 k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
|...|..++.... ..++||||+|+..|+.|++.|...++.+..|||+|++.+|++++
T Consensus 244 k~~~L~~ll~~~~-------~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il 300 (572)
T PRK04537 244 KQTLLLGLLSRSE-------GARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLL 300 (572)
T ss_pred HHHHHHHHHhccc-------CCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHH
Confidence 8888888776532 67899999999999999999999999999999999999999876
No 18
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=1e-48 Score=414.22 Aligned_cols=283 Identities=37% Similarity=0.552 Sum_probs=259.9
Q ss_pred CCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCC
Q 013173 144 VNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVY 223 (448)
Q Consensus 144 ~~~f~~l~L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~ 223 (448)
..+|.+++|++.++++|.++||.+|||+|+++||.++.++|+|++||||||||++|++|+++.+... ...
T Consensus 5 ~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~----------~~~ 74 (629)
T PRK11634 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPE----------LKA 74 (629)
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhc----------cCC
Confidence 3469999999999999999999999999999999999999999999999999999999999887432 234
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcccC-CcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEE
Q 013173 224 PLALILAPTRELSSQIHVEAKKFSYQT-GVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLA 302 (448)
Q Consensus 224 ~~~lil~PtreL~~qi~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lV 302 (448)
+++|||+||+|||.|+++.+++|.... ++++..++||.+...+.+.+..+++|||+||++|++++....+.+++|++||
T Consensus 75 ~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lV 154 (629)
T PRK11634 75 PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLV 154 (629)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEE
Confidence 789999999999999999999987554 7999999999999999999999999999999999999999888999999999
Q ss_pred EcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEecccccccCceeEEEEEeccc
Q 013173 303 LDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHES 382 (448)
Q Consensus 303 lDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~ 382 (448)
|||||+|++++|...+..|+..+ +..+|+++||||+|+.+..++..|+.++..+.+.........+.|.+..+...
T Consensus 155 lDEAd~ml~~gf~~di~~Il~~l----p~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~~ 230 (629)
T PRK11634 155 LDEADEMLRMGFIEDVETIMAQI----PEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGM 230 (629)
T ss_pred eccHHHHhhcccHHHHHHHHHhC----CCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEechh
Confidence 99999999999999999999998 77899999999999999999999999999888877666778888988888888
Q ss_pred chHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCCHHHHHHhh
Q 013173 383 DKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 383 ~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
.|...|..+|.... ..++||||+|+..|+.|++.|...|+.+.++||+|+|.+|++++
T Consensus 231 ~k~~~L~~~L~~~~-------~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il 288 (629)
T PRK11634 231 RKNEALVRFLEAED-------FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTL 288 (629)
T ss_pred hHHHHHHHHHHhcC-------CCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHH
Confidence 89888988887543 46799999999999999999999999999999999999999876
No 19
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=1.6e-48 Score=403.41 Aligned_cols=281 Identities=36% Similarity=0.564 Sum_probs=256.6
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCc
Q 013173 145 NTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYP 224 (448)
Q Consensus 145 ~~f~~l~L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~ 224 (448)
.+|++++|++.+++++.++||.+|||+|+++||.+++|+|++++||||||||++|++|+++.+... ...+
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~----------~~~~ 73 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVK----------RFRV 73 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhc----------cCCc
Confidence 579999999999999999999999999999999999999999999999999999999999987432 1246
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhcccC-CcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEE
Q 013173 225 LALILAPTRELSSQIHVEAKKFSYQT-GVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLAL 303 (448)
Q Consensus 225 ~~lil~PtreL~~qi~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVl 303 (448)
++|||+||+|||.|+++.++.+.... ++++..++||.+...+...+..+++|+|+||++|.+++.+..+.++++++|||
T Consensus 74 ~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lVi 153 (460)
T PRK11776 74 QALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVL 153 (460)
T ss_pred eEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEE
Confidence 79999999999999999999987543 78999999999999999999999999999999999999998889999999999
Q ss_pred cCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEecccccccCceeEEEEEecccc
Q 013173 304 DEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESD 383 (448)
Q Consensus 304 DEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~~ 383 (448)
||||+|++++|...+..++..+ +..+|+++||||+++.+..++..++.++..+.+.... ....+.+.+..+...+
T Consensus 154 DEad~~l~~g~~~~l~~i~~~~----~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~i~~~~~~~~~~~ 228 (460)
T PRK11776 154 DEADRMLDMGFQDAIDAIIRQA----PARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH-DLPAIEQRFYEVSPDE 228 (460)
T ss_pred ECHHHHhCcCcHHHHHHHHHhC----CcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC-CCCCeeEEEEEeCcHH
Confidence 9999999999999999999998 7889999999999999999999999999988875543 4556888888888888
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCCHHHHHHhh
Q 013173 384 KRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 384 k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
|...|..++.... ..++||||+|++.|+.+++.|...++.+..+||+|++.+|++++
T Consensus 229 k~~~l~~ll~~~~-------~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l 285 (460)
T PRK11776 229 RLPALQRLLLHHQ-------PESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVL 285 (460)
T ss_pred HHHHHHHHHHhcC-------CCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHH
Confidence 8888888887543 56799999999999999999999999999999999999999876
No 20
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.8e-49 Score=380.35 Aligned_cols=286 Identities=31% Similarity=0.467 Sum_probs=255.7
Q ss_pred CcccC--CCCHHHHHHHHHCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCC
Q 013173 146 TFAEI--DLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVY 223 (448)
Q Consensus 146 ~f~~l--~L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~ 223 (448)
.|+++ +|+++|++.+..+||.++||+|..+||.+++++||++.|+||||||+||++|++..+.+...... ...
T Consensus 5 ~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~-----~~~ 79 (567)
T KOG0345|consen 5 SFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTP-----PGQ 79 (567)
T ss_pred chhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCC-----ccc
Confidence 45555 47799999999999999999999999999999999999999999999999999998865543221 113
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhccc-CCcEEEEEECCCChHHHHHHHh-cCccEEEeChHHHHHHHhcc--cccCCCee
Q 013173 224 PLALILAPTRELSSQIHVEAKKFSYQ-TGVKVVVAYGGAPINQQLRELE-RGVDILVATPGRLVDLLERA--RVSLQMIR 299 (448)
Q Consensus 224 ~~~lil~PtreL~~qi~~~~~~~~~~-~~~~~~~~~gg~~~~~~~~~l~-~~~~Ilv~Tp~~l~~~l~~~--~~~l~~v~ 299 (448)
.-+|||+||||||.||.+++..|... ..+++.++.||.++.++...+. ++++|+|||||||.+++.+. .+++.+++
T Consensus 80 vgalIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe 159 (567)
T KOG0345|consen 80 VGALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLE 159 (567)
T ss_pred eeEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccc
Confidence 45999999999999999999999765 7889999999999998887765 46999999999999999874 45677999
Q ss_pred EEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEeccccc--ccCceeEEEE
Q 013173 300 YLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGS--STDLIVQRVE 377 (448)
Q Consensus 300 ~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~--~~~~i~q~~~ 377 (448)
+||+||||++++|||..++..|+..| |+.|+|=+||||.+.++.+|++..|+|++.+.|..... ++..+..+|.
T Consensus 160 ~LVLDEADrLldmgFe~~~n~ILs~L----PKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~ 235 (567)
T KOG0345|consen 160 ILVLDEADRLLDMGFEASVNTILSFL----PKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYL 235 (567)
T ss_pred eEEecchHhHhcccHHHHHHHHHHhc----ccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceee
Confidence 99999999999999999999999999 88999999999999999999999999999999987765 6677788889
Q ss_pred EecccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHC--CCCeEEecCCCCHHHHHHhh
Q 013173 378 FVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN--GFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 378 ~~~~~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~--g~~~~~iHg~~~q~eR~~~l 447 (448)
.|+...|...|+++|.... ..++|||..|+..++.....|... .++..+|||.|+|.+|..++
T Consensus 236 v~~a~eK~~~lv~~L~~~~-------~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~ 300 (567)
T KOG0345|consen 236 VCEADEKLSQLVHLLNNNK-------DKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVL 300 (567)
T ss_pred EecHHHHHHHHHHHHhccc-------cccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHH
Confidence 9999999999999999854 788999999999999999988664 68899999999999998875
No 21
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.8e-50 Score=372.46 Aligned_cols=281 Identities=30% Similarity=0.505 Sum_probs=263.6
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCc
Q 013173 145 NTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYP 224 (448)
Q Consensus 145 ~~f~~l~L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~ 224 (448)
..|+++.|.++|+..+.+.||.+|+|+|.++||+++.|+|+++.|..|+|||.+|++|+|..+.. .....
T Consensus 85 ~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~----------~~~~I 154 (459)
T KOG0326|consen 85 NEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDP----------KKNVI 154 (459)
T ss_pred ccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCc----------cccce
Confidence 46999999999999999999999999999999999999999999999999999999999988743 34456
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEc
Q 013173 225 LALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALD 304 (448)
Q Consensus 225 ~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlD 304 (448)
+++|++||||||.|+...++.+++..++++.+.+||++...++-.+...++++|+||||++|+++++-..++++.++|+|
T Consensus 155 Q~~ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~D 234 (459)
T KOG0326|consen 155 QAIILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMD 234 (459)
T ss_pred eEEEEeecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEec
Confidence 79999999999999999999999999999999999999999988899999999999999999999998899999999999
Q ss_pred CCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEecccccccCceeEEEEEecccch
Q 013173 305 EADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDK 384 (448)
Q Consensus 305 Eah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~~k 384 (448)
|||.||+..|.+.+..++..+ |+.+|+++||||||-.|..+..++|.+|..+..- .+.++..++|+|.+|++..|
T Consensus 235 EADKlLs~~F~~~~e~li~~l----P~~rQillySATFP~tVk~Fm~~~l~kPy~INLM-~eLtl~GvtQyYafV~e~qK 309 (459)
T KOG0326|consen 235 EADKLLSVDFQPIVEKLISFL----PKERQILLYSATFPLTVKGFMDRHLKKPYEINLM-EELTLKGVTQYYAFVEERQK 309 (459)
T ss_pred hhhhhhchhhhhHHHHHHHhC----CccceeeEEecccchhHHHHHHHhccCcceeehh-hhhhhcchhhheeeechhhh
Confidence 999999999999999999999 9999999999999999999999999999998763 45788999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCCHHHHHHhh
Q 013173 385 RSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 385 ~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
..+|-.++.... -...|||||+...++.||..+.+.|+.|..+|+.|-|++|.++.
T Consensus 310 vhCLntLfskLq-------INQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVF 365 (459)
T KOG0326|consen 310 VHCLNTLFSKLQ-------INQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVF 365 (459)
T ss_pred hhhHHHHHHHhc-------ccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhh
Confidence 999998887765 34579999999999999999999999999999999999999874
No 22
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.8e-49 Score=384.43 Aligned_cols=299 Identities=30% Similarity=0.443 Sum_probs=258.1
Q ss_pred ccCCCcccCCCCHHHHHHHH-HCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCC
Q 013173 142 PAVNTFAEIDLGEALNLNIR-RCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSR 220 (448)
Q Consensus 142 ~~~~~f~~l~L~~~l~~~l~-~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~ 220 (448)
-.-..|.+++|++.+...|. .+++..||.+|+++||.++.|+|++|.+|||||||++|++|+++.|..... +-.+
T Consensus 133 fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~----ki~R 208 (708)
T KOG0348|consen 133 FTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEP----KIQR 208 (708)
T ss_pred cccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCc----cccc
Confidence 34467999999999999998 789999999999999999999999999999999999999999999976543 2457
Q ss_pred CCCceEEEEcCcHHHHHHHHHHHHHhcc-cCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcc-cccCCCe
Q 013173 221 TVYPLALILAPTRELSSQIHVEAKKFSY-QTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA-RVSLQMI 298 (448)
Q Consensus 221 ~~~~~~lil~PtreL~~qi~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~-~~~l~~v 298 (448)
..++.||||+||||||.|+++.+.++.. +.++-.++++||.....+...|++|++|||+|||||+|+|.+. .+.++.+
T Consensus 209 s~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~L 288 (708)
T KOG0348|consen 209 SDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRL 288 (708)
T ss_pred cCCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeee
Confidence 8899999999999999999999999874 4578889999999999999999999999999999999999885 4688999
Q ss_pred eEEEEcCCcccccCCCHHHHHHHHHHcCCCC---------CCCcEEEEEeccCchHHHHHHHhhhcCcEEEEecc-----
Q 013173 299 RYLALDEADRMLDMGFEPQIRKIVQQMDMPP---------PGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGR----- 364 (448)
Q Consensus 299 ~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~---------~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~----- 364 (448)
+||||||||+++++||+.+|..|++.+.... |..+|.|++|||+++.|.+|+...|+||+.|..+.
T Consensus 289 RwlVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~ 368 (708)
T KOG0348|consen 289 RWLVLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQL 368 (708)
T ss_pred eEEEecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhc
Confidence 9999999999999999999999999884321 23489999999999999999999999999988321
Q ss_pred ------------c--------ccccCceeEEEEEecccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHH
Q 013173 365 ------------V--------GSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWL 424 (448)
Q Consensus 365 ------------~--------~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L 424 (448)
. ...++.+.|+|..|+..-++-+|..+|........ ..++|||+.+.+.++.-++.|
T Consensus 369 ~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~---~qk~iVF~S~~d~VeFHy~lf 445 (708)
T KOG0348|consen 369 NPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEE---KQKMIVFFSCSDSVEFHYSLF 445 (708)
T ss_pred CcchhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhh---hceeEEEEechhHHHHHHHHH
Confidence 1 12345677899999999999888888876543322 558999999999999888887
Q ss_pred HHC----------------------CCCeEEecCCCCHHHHHHhh
Q 013173 425 YMN----------------------GFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 425 ~~~----------------------g~~~~~iHg~~~q~eR~~~l 447 (448)
... +.+..-+||.|+|++|..++
T Consensus 446 ~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f 490 (708)
T KOG0348|consen 446 SEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVF 490 (708)
T ss_pred HhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHH
Confidence 541 35688999999999998765
No 23
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.2e-49 Score=368.00 Aligned_cols=286 Identities=31% Similarity=0.416 Sum_probs=260.5
Q ss_pred CCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCC
Q 013173 144 VNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVY 223 (448)
Q Consensus 144 ~~~f~~l~L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~ 223 (448)
...|..|+|++++.+.++.+++.+|||+|+.+||.|+.|+|++-||.||||||++|.+|+|+++.+++ .+
T Consensus 6 ~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP----------~g 75 (442)
T KOG0340|consen 6 AKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDP----------YG 75 (442)
T ss_pred cCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCC----------Cc
Confidence 46799999999999999999999999999999999999999999999999999999999999997664 34
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcc----cccCCCee
Q 013173 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA----RVSLQMIR 299 (448)
Q Consensus 224 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~----~~~l~~v~ 299 (448)
-.+||+.|||||+.|+.+.|..+++..++++.+++||++.-.+...|.+.+||+|+|||+|.+++..+ ...+++++
T Consensus 76 iFalvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlk 155 (442)
T KOG0340|consen 76 IFALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLK 155 (442)
T ss_pred ceEEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhcee
Confidence 56999999999999999999999999999999999999999999999999999999999999999875 23589999
Q ss_pred EEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcC--cEEEEecccccccCceeEEEE
Q 013173 300 YLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLAN--YIFLAVGRVGSSTDLIVQRVE 377 (448)
Q Consensus 300 ~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~--~~~i~v~~~~~~~~~i~q~~~ 377 (448)
|+|+||||+|++..|.+++.-+.+-+ |..+|+++||||+++.++.+..-.... ..++.+.....+.+.+.|.|.
T Consensus 156 flVlDEADrvL~~~f~d~L~~i~e~l----P~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI 231 (442)
T KOG0340|consen 156 FLVLDEADRVLAGCFPDILEGIEECL----PKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYI 231 (442)
T ss_pred eEEecchhhhhccchhhHHhhhhccC----CCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhhee
Confidence 99999999999999999999999888 778999999999999999887766665 445555566677788999999
Q ss_pred EecccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCCHHHHHHhh
Q 013173 378 FVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 378 ~~~~~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
.+....|...|+.+|...... ..+.++||+||..+|+.|+..|...++.+.++|+.|+|.||-.+|
T Consensus 232 ~~~~~vkdaYLv~~Lr~~~~~----~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aL 297 (442)
T KOG0340|consen 232 LVSIDVKDAYLVHLLRDFENK----ENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAAL 297 (442)
T ss_pred ecchhhhHHHHHHHHhhhhhc----cCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHH
Confidence 999999999999999987543 256799999999999999999999999999999999999998775
No 24
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-48 Score=411.16 Aligned_cols=300 Identities=41% Similarity=0.662 Sum_probs=277.8
Q ss_pred cccCCCCCCccCCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhc
Q 013173 133 VETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQY 212 (448)
Q Consensus 133 v~~~~~~~~~~~~~f~~l~L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~ 212 (448)
+.+.+...|.|+.+|...+++..++..++++||.+|||||.+|||+|+.|+|||.+|.||||||++|+||++.++...+.
T Consensus 353 i~v~g~~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~ 432 (997)
T KOG0334|consen 353 IKVKGKECPKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRP 432 (997)
T ss_pred eeeccCCCCcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCC
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999966654433
Q ss_pred ccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhccc
Q 013173 213 VQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERAR 292 (448)
Q Consensus 213 ~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~ 292 (448)
. ....+|.+|||+|||||+.||++.+++|+..++++++++|||..+.+++..+.+++.|+|||||++++++-.+.
T Consensus 433 ~-----~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~ 507 (997)
T KOG0334|consen 433 L-----EEGDGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANS 507 (997)
T ss_pred h-----hhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcC
Confidence 2 23558999999999999999999999999999999999999999999999999999999999999999986543
Q ss_pred ---ccCCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEeccccccc
Q 013173 293 ---VSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSST 369 (448)
Q Consensus 293 ---~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~ 369 (448)
.++..+.|||+||||+|++++|+|++..|++.+ ++.+|+++||||||..+..++...++.|+.+.|+-.....
T Consensus 508 grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nl----rpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~ 583 (997)
T KOG0334|consen 508 GRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNL----RPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVC 583 (997)
T ss_pred CccccccccceeeechhhhhheeccCcccchHHhhc----chhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEe
Confidence 356667799999999999999999999999999 8899999999999999999999999999999998777777
Q ss_pred CceeEEEEEec-ccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCCHHHHHHhh
Q 013173 370 DLIVQRVEFVH-ESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 370 ~~i~q~~~~~~-~~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
..+.|.+..+. +.+|+..|+++|..... ..++||||...+.|+.|.+.|...|++|.++||+.+|.+|...|
T Consensus 584 k~V~q~v~V~~~e~eKf~kL~eLl~e~~e------~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti 656 (997)
T KOG0334|consen 584 KEVTQVVRVCAIENEKFLKLLELLGERYE------DGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTI 656 (997)
T ss_pred ccceEEEEEecCchHHHHHHHHHHHHHhh------cCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHH
Confidence 89999999998 88999999999998764 67899999999999999999999999999999999999999876
No 25
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7e-48 Score=369.83 Aligned_cols=289 Identities=29% Similarity=0.413 Sum_probs=260.5
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCc
Q 013173 145 NTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYP 224 (448)
Q Consensus 145 ~~f~~l~L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~ 224 (448)
.+|++++|++.|++++.++||.+||-+|..+||.++.|+|+++.|.||||||++|++|+|+.++...... ....+|
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~----~~e~~~ 94 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTN----DGEQGP 94 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcc----cccccc
Confidence 5899999999999999999999999999999999999999999999999999999999999999876432 346688
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhcccC--CcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhccc-ccCCCeeEE
Q 013173 225 LALILAPTRELSSQIHVEAKKFSYQT--GVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERAR-VSLQMIRYL 301 (448)
Q Consensus 225 ~~lil~PtreL~~qi~~~~~~~~~~~--~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~-~~l~~v~~l 301 (448)
.++||+||+|||.|++.++.++.... .+++.-+...++.......|...++|+|+||++|+.++..+. ..+..+++|
T Consensus 95 sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~L 174 (569)
T KOG0346|consen 95 SAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFL 174 (569)
T ss_pred eeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeE
Confidence 99999999999999999999987544 356666666666666667788889999999999999999876 678999999
Q ss_pred EEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEecccccc-cCceeEEEEEec
Q 013173 302 ALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSS-TDLIVQRVEFVH 380 (448)
Q Consensus 302 VlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~-~~~i~q~~~~~~ 380 (448)
|+||||.++..||++++..|..++ |...|.++||||++++|+.|-+.++++|+.+.+...+.. .+.+.|++..+.
T Consensus 175 VvDEADLllsfGYeedlk~l~~~L----Pr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cs 250 (569)
T KOG0346|consen 175 VVDEADLLLSFGYEEDLKKLRSHL----PRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCS 250 (569)
T ss_pred EechhhhhhhcccHHHHHHHHHhC----CchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEec
Confidence 999999999999999999999999 888999999999999999999999999999988766654 467888999999
Q ss_pred ccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCCHHHHHHhh
Q 013173 381 ESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 381 ~~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
+.+|...++.+++.... .+++||||||.+.|-.|.-+|.+-|++...+.|+|++.-|-.+|
T Consensus 251 e~DKflllyallKL~LI------~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii 311 (569)
T KOG0346|consen 251 EEDKFLLLYALLKLRLI------RGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHII 311 (569)
T ss_pred cchhHHHHHHHHHHHHh------cCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHH
Confidence 99999999999986543 67899999999999999999999999999999999999998776
No 26
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=1.3e-46 Score=386.76 Aligned_cols=285 Identities=32% Similarity=0.497 Sum_probs=253.5
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCce
Q 013173 146 TFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPL 225 (448)
Q Consensus 146 ~f~~l~L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~ 225 (448)
+|++++|++.+++.+.++||.+||++|.++||.++.|+|++++||||+|||++|++|+++.+..... .....++
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~------~~~~~~~ 75 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPR------RKSGPPR 75 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccc------cCCCCce
Confidence 6999999999999999999999999999999999999999999999999999999999998875321 1123468
Q ss_pred EEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEcC
Q 013173 226 ALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDE 305 (448)
Q Consensus 226 ~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDE 305 (448)
+|||+||+|||.|+++.+..+....++++..++||.....+...+..+++|||+||++|++++....+++.++++|||||
T Consensus 76 ~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDE 155 (434)
T PRK11192 76 ILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDE 155 (434)
T ss_pred EEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEEC
Confidence 99999999999999999999998889999999999999888888888899999999999999999888999999999999
Q ss_pred CcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCch-HHHHHHHhhhcCcEEEEecccccccCceeEEEEEecc-cc
Q 013173 306 ADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPK-EIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHE-SD 383 (448)
Q Consensus 306 ah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~-~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~-~~ 383 (448)
||+|++++|...+..|...+ +...|+++||||++. .+..++..++.+++.+.+.........+.+.+..+.. ..
T Consensus 156 ah~~l~~~~~~~~~~i~~~~----~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~ 231 (434)
T PRK11192 156 ADRMLDMGFAQDIETIAAET----RWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEH 231 (434)
T ss_pred HHHHhCCCcHHHHHHHHHhC----ccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCHHH
Confidence 99999999999999999888 567899999999985 5888888899999988887666666778887776654 45
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCCHHHHHHhh
Q 013173 384 KRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 384 k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
|...|..++.... ..++||||++++.|+.|+..|...++.+..+||+|++.+|..++
T Consensus 232 k~~~l~~l~~~~~-------~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l 288 (434)
T PRK11192 232 KTALLCHLLKQPE-------VTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAI 288 (434)
T ss_pred HHHHHHHHHhcCC-------CCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHH
Confidence 6666666665421 57899999999999999999999999999999999999999875
No 27
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.1e-44 Score=376.02 Aligned_cols=293 Identities=36% Similarity=0.526 Sum_probs=258.2
Q ss_pred cCCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCC
Q 013173 143 AVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTV 222 (448)
Q Consensus 143 ~~~~f~~l~L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~ 222 (448)
....|.+++|++.|.++|.++||.+||++|.++|+.+++|+|++++++||||||++|++|+++.+.+..... .....
T Consensus 85 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~---~~~~~ 161 (475)
T PRK01297 85 GKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPK---ERYMG 161 (475)
T ss_pred CCCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCccc---ccccC
Confidence 346799999999999999999999999999999999999999999999999999999999999987653211 11122
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHHhc-CccEEEeChHHHHHHHhcccccCCCeeEE
Q 013173 223 YPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELER-GVDILVATPGRLVDLLERARVSLQMIRYL 301 (448)
Q Consensus 223 ~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~-~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~l 301 (448)
.+++|||+||+|||.|+++.++.+....++++..++||.....+.+.+.. .++|||+||++|++++......++++++|
T Consensus 162 ~~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~l 241 (475)
T PRK01297 162 EPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVM 241 (475)
T ss_pred CceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceE
Confidence 57899999999999999999999998889999999999988888777754 58999999999999998888889999999
Q ss_pred EEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEecccccccCceeEEEEEecc
Q 013173 302 ALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHE 381 (448)
Q Consensus 302 VlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~ 381 (448)
||||||++++++|.+.+..|+..+.. ...+|+++||||++.++..++..++.++..+.+.........+.+.+..+..
T Consensus 242 ViDEah~l~~~~~~~~l~~i~~~~~~--~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 319 (475)
T PRK01297 242 VLDEADRMLDMGFIPQVRQIIRQTPR--KEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAG 319 (475)
T ss_pred EechHHHHHhcccHHHHHHHHHhCCC--CCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecc
Confidence 99999999999999999999988732 2357999999999999999999999999888877666666778888888888
Q ss_pred cchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCCHHHHHHhh
Q 013173 382 SDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 382 ~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
.+|...|.+++.... ..++||||+++++|+.+++.|...++.+..+||++++.+|.+++
T Consensus 320 ~~k~~~l~~ll~~~~-------~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~ 378 (475)
T PRK01297 320 SDKYKLLYNLVTQNP-------WERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTL 378 (475)
T ss_pred hhHHHHHHHHHHhcC-------CCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHH
Confidence 888888888776532 56899999999999999999999999999999999999998875
No 28
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.6e-46 Score=353.79 Aligned_cols=281 Identities=34% Similarity=0.505 Sum_probs=260.6
Q ss_pred CCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCC
Q 013173 144 VNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVY 223 (448)
Q Consensus 144 ~~~f~~l~L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~ 223 (448)
+.+|++++|++.|++.+..+||.+|+.+|+.||+.+..|.|+++++++|+|||.+|++++++.+-.. ...
T Consensus 25 vdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~----------~ke 94 (397)
T KOG0327|consen 25 VDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMS----------VKE 94 (397)
T ss_pred hhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcc----------hHH
Confidence 4589999999999999999999999999999999999999999999999999999999999987322 234
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHH-hcCccEEEeChHHHHHHHhcccccCCCeeEEE
Q 013173 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLREL-ERGVDILVATPGRLVDLLERARVSLQMIRYLA 302 (448)
Q Consensus 224 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l-~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lV 302 (448)
++||+++|||||+.|++.....++...++++..+.||.+...+...+ ...++|+|+|||++.+++....+....++++|
T Consensus 95 ~qalilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfv 174 (397)
T KOG0327|consen 95 TQALILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFV 174 (397)
T ss_pred HHHHHhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEe
Confidence 67999999999999999999999999999999999999988554444 44699999999999999999988889999999
Q ss_pred EcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEecccccccCceeEEEEEeccc
Q 013173 303 LDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHES 382 (448)
Q Consensus 303 lDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~ 382 (448)
+||||.|+..||.++|..|++++ +.+.|++++|||+|.++..+.+.|+.+|+.+.+...+.+.+.+.|+|..+...
T Consensus 175 lDEaDEmLs~gfkdqI~~if~~l----p~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~ 250 (397)
T KOG0327|consen 175 LDEADEMLSRGFKDQIYDIFQEL----PSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKE 250 (397)
T ss_pred ecchHhhhccchHHHHHHHHHHc----CcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeecccc
Confidence 99999999999999999999999 88899999999999999999999999999999999999999999999999988
Q ss_pred chHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCCHHHHHHhh
Q 013173 383 DKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 383 ~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
.|...|.++.. . -...+|||||++.++.|...|...++.+.++||+|.|.+|..++
T Consensus 251 ~k~~~l~dl~~-~--------~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~ 306 (397)
T KOG0327|consen 251 EKLDTLCDLYR-R--------VTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLM 306 (397)
T ss_pred ccccHHHHHHH-h--------hhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHH
Confidence 89999999998 2 34479999999999999999999999999999999999998765
No 29
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.7e-46 Score=365.56 Aligned_cols=298 Identities=27% Similarity=0.422 Sum_probs=249.5
Q ss_pred ccCCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHHhhHhCC-CCeeEEccCCCCccchhhhhHHHHHhhhhcccCC---C
Q 013173 142 PAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGG-RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRP---R 217 (448)
Q Consensus 142 ~~~~~f~~l~L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g-~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~---~ 217 (448)
..+..|..|.|+..++++|..+||.+||+||..+||.+..| .|+|-.|.||||||+||-+||+..+.+....... .
T Consensus 178 ~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~ 257 (731)
T KOG0347|consen 178 VDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNT 257 (731)
T ss_pred cChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhH
Confidence 45667889999999999999999999999999999999988 8999999999999999999999977654332211 1
Q ss_pred CCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccc---c
Q 013173 218 GSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARV---S 294 (448)
Q Consensus 218 ~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~---~ 294 (448)
......|.+||++||||||.|+...+..++..+++++..++||.....|.+.|...++|+|||||||+.+++.+.. .
T Consensus 258 ~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~ 337 (731)
T KOG0347|consen 258 SAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGN 337 (731)
T ss_pred HhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhh
Confidence 1223334599999999999999999999999999999999999999999999999999999999999999987654 5
Q ss_pred CCCeeEEEEcCCcccccCCCHHHHHHHHHHcC-CCCCCCcEEEEEeccCchH---------------------HHHHHHh
Q 013173 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMD-MPPPGMRQTMLFSATFPKE---------------------IQRLASD 352 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~-~~~~~~~q~i~~SAT~~~~---------------------v~~l~~~ 352 (448)
+++|++|||||||+|++.|..+.+..|++.|+ .+....+|+++||||++-. ++.|+..
T Consensus 338 ~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ 417 (731)
T KOG0347|consen 338 FKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKK 417 (731)
T ss_pred hhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHH
Confidence 78999999999999999998899999999996 4445678999999997422 3334333
Q ss_pred h--hcCcEEEEecccccccCceeEEEEEecccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCC
Q 013173 353 F--LANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFP 430 (448)
Q Consensus 353 ~--l~~~~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~ 430 (448)
. -.+|.++...+...+...+....+.|+..+|.-.|+-+|..+ .++||||||++..+..|+-+|...+++
T Consensus 418 ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~ry--------PGrTlVF~NsId~vKRLt~~L~~L~i~ 489 (731)
T KOG0347|consen 418 IGFRGKPKIIDLTPQSATASTLTESLIECPPLEKDLYLYYFLTRY--------PGRTLVFCNSIDCVKRLTVLLNNLDIP 489 (731)
T ss_pred hCccCCCeeEecCcchhHHHHHHHHhhcCCccccceeEEEEEeec--------CCceEEEechHHHHHHHHHHHhhcCCC
Confidence 2 235566666666666666666666677777776666666654 678999999999999999999999999
Q ss_pred eEEecCCCCHHHHHHhh
Q 013173 431 ATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 431 ~~~iHg~~~q~eR~~~l 447 (448)
...+|+.|.|..|.+-|
T Consensus 490 p~~LHA~M~QKqRLknL 506 (731)
T KOG0347|consen 490 PLPLHASMIQKQRLKNL 506 (731)
T ss_pred CchhhHHHHHHHHHHhH
Confidence 99999999999998765
No 30
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.6e-45 Score=350.61 Aligned_cols=283 Identities=33% Similarity=0.507 Sum_probs=265.2
Q ss_pred CCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCC
Q 013173 144 VNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVY 223 (448)
Q Consensus 144 ~~~f~~l~L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~ 223 (448)
..+|..++|+..++++|.+.||..|||+|++.||.++.++|++..|.||||||+||++|+++++.... ..+
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s---------~~g 90 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS---------QTG 90 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc---------ccc
Confidence 46799999999999999999999999999999999999999999999999999999999999987543 345
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEE
Q 013173 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLAL 303 (448)
Q Consensus 224 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVl 303 (448)
.+++|++|||||+.|..+.++.++..+++++.+++||..+.+|...+..++|||+||||+++.+.-.-.+.|+.|.|||+
T Consensus 91 ~RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVf 170 (529)
T KOG0337|consen 91 LRALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVF 170 (529)
T ss_pred cceeeccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeee
Confidence 67999999999999999999999999999999999999999999999999999999999999988777789999999999
Q ss_pred cCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEecccccccCceeEEEEEecccc
Q 013173 304 DEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESD 383 (448)
Q Consensus 304 DEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~~ 383 (448)
||||++++|||.+++.+++..+ +..+|+++||||+|..+-.+++.-+.+|+.+.++......+.+...+..+...+
T Consensus 171 dEadrlfemgfqeql~e~l~rl----~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a~ 246 (529)
T KOG0337|consen 171 DEADRLFEMGFQEQLHEILSRL----PESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKAE 246 (529)
T ss_pred hhhhHHHhhhhHHHHHHHHHhC----CCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccHH
Confidence 9999999999999999999999 888999999999999999999999999999998777777788888889999999
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCCHHHHHH
Q 013173 384 KRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSI 445 (448)
Q Consensus 384 k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~ 445 (448)
|..+|+.++..... ..+|+|||.|+.+|+.+...|+..|+.+..|.|.|++.-|+.
T Consensus 247 K~aaLl~il~~~~~------~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~ 302 (529)
T KOG0337|consen 247 KEAALLSILGGRIK------DKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKI 302 (529)
T ss_pred HHHHHHHHHhcccc------ccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhh
Confidence 99999999998652 567999999999999999999999999999999999999873
No 31
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=8.5e-43 Score=355.01 Aligned_cols=283 Identities=30% Similarity=0.448 Sum_probs=249.1
Q ss_pred CCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCC
Q 013173 144 VNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVY 223 (448)
Q Consensus 144 ~~~f~~l~L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~ 223 (448)
..+|++++|++.+.+++..++|.+|+|+|.++|+.+++++|++++||||||||++|++|+++.+... ...
T Consensus 27 ~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~----------~~~ 96 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYD----------LNA 96 (401)
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCC----------CCC
Confidence 5789999999999999999999999999999999999999999999999999999999999876321 234
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEE
Q 013173 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLAL 303 (448)
Q Consensus 224 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVl 303 (448)
+++|||+||++|+.|+.+.+..++....+.+..++|+.....+...+..+++|+|+||++|.+++....+.++++++|||
T Consensus 97 ~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvVi 176 (401)
T PTZ00424 97 CQALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFIL 176 (401)
T ss_pred ceEEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEE
Confidence 67999999999999999999999887888888999999988888888888999999999999999888788999999999
Q ss_pred cCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEecccccccCceeEEEEEecc-c
Q 013173 304 DEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHE-S 382 (448)
Q Consensus 304 DEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~-~ 382 (448)
||||++++.+|...+..++..+ +...|++++|||++.++..+...++.++..+.+.........+.+.+..+.. .
T Consensus 177 DEah~~~~~~~~~~~~~i~~~~----~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (401)
T PTZ00424 177 DEADEMLSRGFKGQIYDVFKKL----PPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEE 252 (401)
T ss_pred ecHHHHHhcchHHHHHHHHhhC----CCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHH
Confidence 9999999999999999999888 6778999999999999999999999988887776655666777777766654 3
Q ss_pred chHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCCHHHHHHhh
Q 013173 383 DKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 383 ~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
.+...+.+++.... ..++||||+|+++|+.+++.|...++.+..+||++++.+|+.++
T Consensus 253 ~~~~~l~~~~~~~~-------~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~ 310 (401)
T PTZ00424 253 WKFDTLCDLYETLT-------ITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIM 310 (401)
T ss_pred HHHHHHHHHHHhcC-------CCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHH
Confidence 35555555554332 56799999999999999999999999999999999999999875
No 32
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.5e-44 Score=337.59 Aligned_cols=288 Identities=29% Similarity=0.423 Sum_probs=252.8
Q ss_pred CCCCCCccCCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHHhhHhCC--CCeeEEccCCCCccchhhhhHHHHHhhhhcc
Q 013173 136 SGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGG--RDLMACAQTGSGKTAAFCFPIISGIMREQYV 213 (448)
Q Consensus 136 ~~~~~~~~~~~f~~l~L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g--~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~ 213 (448)
+++...-.+.+|++|.|+++|++.+..++|.+|+.||..++|.++.. +|+|++++.|+|||+||.|.+|.++.-
T Consensus 81 dpnsPlyS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~---- 156 (477)
T KOG0332|consen 81 DPNSPLYSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDP---- 156 (477)
T ss_pred CCCCCccccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCc----
Confidence 34444456789999999999999999999999999999999999965 899999999999999999999988732
Q ss_pred cCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhc-cc
Q 013173 214 QRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLER-AR 292 (448)
Q Consensus 214 ~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~-~~ 292 (448)
....|++|+|+||||||.|+.+.+.+.++.++++.....-+.....- ..+ ..+|+|+|||.+++++.. ..
T Consensus 157 ------~~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG-~~i--~eqIviGTPGtv~Dlm~klk~ 227 (477)
T KOG0332|consen 157 ------DVVVPQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKRG-NKL--TEQIVIGTPGTVLDLMLKLKC 227 (477)
T ss_pred ------cccCCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccccC-Ccc--hhheeeCCCccHHHHHHHHHh
Confidence 34568899999999999999999999999888888877766521100 011 147999999999999988 66
Q ss_pred ccCCCeeEEEEcCCccccc-CCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEecccccccCc
Q 013173 293 VSLQMIRYLALDEADRMLD-MGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDL 371 (448)
Q Consensus 293 ~~l~~v~~lVlDEah~ll~-~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~ 371 (448)
+++..++++|+||||.|++ .||.++-..|...+ |...|+|+||||+...+..++..++.++..+.+.+.+..+++
T Consensus 228 id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~l----P~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~ 303 (477)
T KOG0332|consen 228 IDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSL----PRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDN 303 (477)
T ss_pred hChhhceEEEecchhhhhhcccccccchhhhhhc----CCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccc
Confidence 7899999999999999987 47999999999888 788999999999999999999999999999999999999999
Q ss_pred eeEEEEEecc-cchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCCHHHHHHhh
Q 013173 372 IVQRVEFVHE-SDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 372 i~q~~~~~~~-~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
|.|+|..|.. .+|...|.++..... -+.+||||.|+..|..|+..|...|+.+.++||+|+-++|..++
T Consensus 304 IkQlyv~C~~~~~K~~~l~~lyg~~t-------igqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii 373 (477)
T KOG0332|consen 304 IKQLYVLCACRDDKYQALVNLYGLLT-------IGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAII 373 (477)
T ss_pred hhhheeeccchhhHHHHHHHHHhhhh-------hhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHH
Confidence 9999998854 578888888665543 56799999999999999999999999999999999999999876
No 33
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=9.7e-44 Score=354.23 Aligned_cols=289 Identities=27% Similarity=0.425 Sum_probs=259.6
Q ss_pred CCCCCccCCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCC
Q 013173 137 GENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRP 216 (448)
Q Consensus 137 ~~~~~~~~~~f~~l~L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~ 216 (448)
+...+.....|+++-|..+++..|+..+|..||++|..|||.++.+-|+||+|..|+|||++|.+.+++.+
T Consensus 17 ~DV~~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl--------- 87 (980)
T KOG4284|consen 17 IDVQSNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESL--------- 87 (980)
T ss_pred cccccCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhc---------
Confidence 34445566789999999999999999999999999999999999999999999999999999999988877
Q ss_pred CCCCCCCceEEEEcCcHHHHHHHHHHHHHhcc-cCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccC
Q 013173 217 RGSRTVYPLALILAPTRELSSQIHVEAKKFSY-QTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSL 295 (448)
Q Consensus 217 ~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l 295 (448)
..+...++++||+||||++.||++.+.+++. ..+.++.+++||+........+.. ++|+|+|||||.++++.+.+++
T Consensus 88 -~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~-~rIvIGtPGRi~qL~el~~~n~ 165 (980)
T KOG4284|consen 88 -DSRSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQ-TRIVIGTPGRIAQLVELGAMNM 165 (980)
T ss_pred -CcccCcceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhh-ceEEecCchHHHHHHHhcCCCc
Confidence 3346678899999999999999999999984 678999999999998887777655 7899999999999999999999
Q ss_pred CCeeEEEEcCCcccccC-CCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEecccccccCceeE
Q 013173 296 QMIRYLALDEADRMLDM-GFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQ 374 (448)
Q Consensus 296 ~~v~~lVlDEah~ll~~-gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q 374 (448)
++|+++||||||.|++. .|.++|..|++.| |..+|++.||||.|..+.+++.+||++|.++.....+..+-.|.|
T Consensus 166 s~vrlfVLDEADkL~~t~sfq~~In~ii~sl----P~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQ 241 (980)
T KOG4284|consen 166 SHVRLFVLDEADKLMDTESFQDDINIIINSL----PQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQ 241 (980)
T ss_pred cceeEEEeccHHhhhchhhHHHHHHHHHHhc----chhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhh
Confidence 99999999999999994 5999999999999 899999999999999999999999999999999888888889999
Q ss_pred EEEEeccc--------chHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCCHHHHHHh
Q 013173 375 RVEFVHES--------DKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIE 446 (448)
Q Consensus 375 ~~~~~~~~--------~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~ 446 (448)
++..+... .|..+|-+++...+ -..+||||+....|+-++.+|...|++|.+|.|.|+|.+|..+
T Consensus 242 yv~~~~s~nnsveemrlklq~L~~vf~~ip-------y~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a 314 (980)
T KOG4284|consen 242 YVVAKCSPNNSVEEMRLKLQKLTHVFKSIP-------YVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLA 314 (980)
T ss_pred eeeeccCCcchHHHHHHHHHHHHHHHhhCc-------hHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHH
Confidence 88776442 36666666666654 3457999999999999999999999999999999999999876
Q ss_pred h
Q 013173 447 I 447 (448)
Q Consensus 447 l 447 (448)
+
T Consensus 315 ~ 315 (980)
T KOG4284|consen 315 V 315 (980)
T ss_pred H
Confidence 4
No 34
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.2e-41 Score=303.73 Aligned_cols=263 Identities=29% Similarity=0.432 Sum_probs=233.9
Q ss_pred ccCCCCCCccCCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcc
Q 013173 134 ETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYV 213 (448)
Q Consensus 134 ~~~~~~~~~~~~~f~~l~L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~ 213 (448)
+..|.++....+.|.++-|+++|++++..+||..|+.+|.++||...-|.|++++|.+|.|||++|.+..|+.+-
T Consensus 31 d~kgsyv~ihssgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqie----- 105 (387)
T KOG0329|consen 31 DKKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIE----- 105 (387)
T ss_pred cccCcEEEEeccchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcC-----
Confidence 456778877888999999999999999999999999999999999999999999999999999999999998773
Q ss_pred cCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcc-cCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhccc
Q 013173 214 QRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSY-QTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERAR 292 (448)
Q Consensus 214 ~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~ 292 (448)
.......+||+|.|||||-||..+..+|++ .+++++.+++||.++......+.+.++|+|+||||++.+.++..
T Consensus 106 -----pv~g~vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~ 180 (387)
T KOG0329|consen 106 -----PVDGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRS 180 (387)
T ss_pred -----CCCCeEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhcc
Confidence 223346699999999999999999999974 56899999999999999999999999999999999999999999
Q ss_pred ccCCCeeEEEEcCCcccccC-CCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEeccc-ccccC
Q 013173 293 VSLQMIRYLALDEADRMLDM-GFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRV-GSSTD 370 (448)
Q Consensus 293 ~~l~~v~~lVlDEah~ll~~-gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~-~~~~~ 370 (448)
+++++++++||||||.|+++ ..+.++..|+..- |...|+++||||++++++..+++||.+|+.++++.. ..++.
T Consensus 181 l~lk~vkhFvlDEcdkmle~lDMrRDvQEifr~t----p~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLH 256 (387)
T KOG0329|consen 181 LNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRMT----PHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLH 256 (387)
T ss_pred CchhhcceeehhhHHHHHHHHHHHHHHHHHhhcC----cccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhh
Confidence 99999999999999999874 3445555555544 889999999999999999999999999999998765 45778
Q ss_pred ceeEEEEEecccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhH
Q 013173 371 LIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGA 417 (448)
Q Consensus 371 ~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a 417 (448)
.+.|+|...++.+|...|.++|..... .+++||+.+....
T Consensus 257 GLqQ~YvkLke~eKNrkl~dLLd~LeF-------NQVvIFvKsv~Rl 296 (387)
T KOG0329|consen 257 GLQQYYVKLKENEKNRKLNDLLDVLEF-------NQVVIFVKSVQRL 296 (387)
T ss_pred hHHHHHHhhhhhhhhhhhhhhhhhhhh-------cceeEeeehhhhh
Confidence 899999999999999999999998764 4589999998763
No 35
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=2.1e-38 Score=341.81 Aligned_cols=271 Identities=19% Similarity=0.219 Sum_probs=207.2
Q ss_pred CCCHHHHHHHHHCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEc
Q 013173 151 DLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILA 230 (448)
Q Consensus 151 ~L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~ 230 (448)
.|++.|.++|.+.||.+|+++|.++||.++.|+|+++++|||||||+||++|+|+.+.+. ..+++|||+
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~-----------~~~~aL~l~ 88 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADD-----------PRATALYLA 88 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhC-----------CCcEEEEEc
Confidence 489999999999999999999999999999999999999999999999999999988653 136799999
Q ss_pred CcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhc----ccccCCCeeEEEEcCC
Q 013173 231 PTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLER----ARVSLQMIRYLALDEA 306 (448)
Q Consensus 231 PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~----~~~~l~~v~~lVlDEa 306 (448)
|||||+.|+...++++. ..++++..+.|+++. .+...+..+++|||+||++|...+.. ....++++++||||||
T Consensus 89 PtraLa~q~~~~l~~l~-~~~i~v~~~~Gdt~~-~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEa 166 (742)
T TIGR03817 89 PTKALAADQLRAVRELT-LRGVRPATYDGDTPT-EERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDEC 166 (742)
T ss_pred ChHHHHHHHHHHHHHhc-cCCeEEEEEeCCCCH-HHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeCh
Confidence 99999999999999997 457888887777764 44456677799999999999754322 1234899999999999
Q ss_pred cccccCCCHHHHHHHHHHcCCC---CCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEecccccccCceeEEEEEecc--
Q 013173 307 DRMLDMGFEPQIRKIVQQMDMP---PPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHE-- 381 (448)
Q Consensus 307 h~ll~~gf~~~i~~i~~~l~~~---~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~-- 381 (448)
|+|.+ .|..++..++..+... .+...|+++||||+++... ++..++..++.+ +......... .+.+.+...
T Consensus 167 h~~~g-~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~-i~~~~~~~~~-~~~~~~~p~~~ 242 (742)
T TIGR03817 167 HSYRG-VFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVA-VTEDGSPRGA-RTVALWEPPLT 242 (742)
T ss_pred hhccC-ccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEE-ECCCCCCcCc-eEEEEecCCcc
Confidence 99977 4777777766655211 1346899999999998755 577777777544 3222222222 222222111
Q ss_pred ---------------cchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHC--------CCCeEEecCCC
Q 013173 382 ---------------SDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN--------GFPATTIHGDR 438 (448)
Q Consensus 382 ---------------~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~--------g~~~~~iHg~~ 438 (448)
.++...+.+++.. +.++||||+|++.|+.++..|... +..+..+||++
T Consensus 243 ~~~~~~~~~~r~~~~~~~~~~l~~l~~~---------~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~ 313 (742)
T TIGR03817 243 ELTGENGAPVRRSASAEAADLLADLVAE---------GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGY 313 (742)
T ss_pred ccccccccccccchHHHHHHHHHHHHHC---------CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCC
Confidence 1222333333331 567999999999999999998763 67899999999
Q ss_pred CHHHHHHhh
Q 013173 439 TQQRTSIEI 447 (448)
Q Consensus 439 ~q~eR~~~l 447 (448)
++++|++++
T Consensus 314 ~~~eR~~ie 322 (742)
T TIGR03817 314 LPEDRRELE 322 (742)
T ss_pred CHHHHHHHH
Confidence 999999875
No 36
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-39 Score=322.56 Aligned_cols=302 Identities=30% Similarity=0.435 Sum_probs=263.4
Q ss_pred cccccCCCCCCccCCCcccC----CCCHHHHHHHHHCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHH
Q 013173 131 IPVETSGENVPPAVNTFAEI----DLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISG 206 (448)
Q Consensus 131 ~~v~~~~~~~~~~~~~f~~l----~L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~ 206 (448)
..+.+.|..+|+++.+|.++ ..+..|++++...+|..|+|+|.++||.++.++|+|+|||||||||++|++|+|++
T Consensus 118 ~k~~v~G~~~~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~ 197 (593)
T KOG0344|consen 118 NKINVDGFHLPPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQH 197 (593)
T ss_pred ceeeccCCCCCCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHH
Confidence 35667899999999999985 58899999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhc--ccCCcEEEEEECCCChHHH-HHHHhcCccEEEeChHH
Q 013173 207 IMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFS--YQTGVKVVVAYGGAPINQQ-LRELERGVDILVATPGR 283 (448)
Q Consensus 207 l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~--~~~~~~~~~~~gg~~~~~~-~~~l~~~~~Ilv~Tp~~ 283 (448)
+..... .+...+.+++|+.|||+|+.|++.++.+|. ..++.++..+.......+. .-.....++|+|.||-+
T Consensus 198 L~~~~~-----~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~r 272 (593)
T KOG0344|consen 198 LKDLSQ-----EKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMR 272 (593)
T ss_pred HHHhhc-----ccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHH
Confidence 976543 234567889999999999999999999998 6666666555443322222 22223348999999999
Q ss_pred HHHHHhccc--ccCCCeeEEEEcCCcccccC-CCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEE
Q 013173 284 LVDLLERAR--VSLQMIRYLALDEADRMLDM-GFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFL 360 (448)
Q Consensus 284 l~~~l~~~~--~~l~~v~~lVlDEah~ll~~-gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i 360 (448)
+..++...+ +++..|.++|+||||++++. .|..|+..|+..+.+ ++..+-+||||++..+.+++...+.+++.+
T Consensus 273 i~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s---~~i~~a~FSat~~~~VEE~~~~i~~~~~~v 349 (593)
T KOG0344|consen 273 IVGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQS---PDIRVALFSATISVYVEEWAELIKSDLKRV 349 (593)
T ss_pred HHHHhcCCCccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcC---cchhhhhhhccccHHHHHHHHHhhccceeE
Confidence 999998876 78999999999999999999 899999999999965 457789999999999999999999999999
Q ss_pred EecccccccCceeEEEEEe-cccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHH-HHCCCCeEEecCCC
Q 013173 361 AVGRVGSSTDLIVQRVEFV-HESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWL-YMNGFPATTIHGDR 438 (448)
Q Consensus 361 ~v~~~~~~~~~i~q~~~~~-~~~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L-~~~g~~~~~iHg~~ 438 (448)
.++...+....+.|...++ .+..|.-.+.+++.... ..++|||+.++++|.+|...| ...++++.+|||+.
T Consensus 350 ivg~~~sa~~~V~QelvF~gse~~K~lA~rq~v~~g~-------~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~ 422 (593)
T KOG0344|consen 350 IVGLRNSANETVDQELVFCGSEKGKLLALRQLVASGF-------KPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGER 422 (593)
T ss_pred EEecchhHhhhhhhhheeeecchhHHHHHHHHHhccC-------CCCeEEEEecHHHHHHHHHHhhhccCcceeeEeccc
Confidence 9999999999999988887 55678888888888764 788999999999999999999 78899999999999
Q ss_pred CHHHHHHhh
Q 013173 439 TQQRTSIEI 447 (448)
Q Consensus 439 ~q~eR~~~l 447 (448)
+|.+|++++
T Consensus 423 ~~~qrde~~ 431 (593)
T KOG0344|consen 423 SQKQRDETM 431 (593)
T ss_pred chhHHHHHH
Confidence 999999875
No 37
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=5.9e-37 Score=325.72 Aligned_cols=257 Identities=18% Similarity=0.156 Sum_probs=203.3
Q ss_pred CCCCCCCHHHHhHHhhHhCCC-CeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEE-EcCcHHHHHHHH
Q 013173 163 CKYVKPTPVQRHAIPISIGGR-DLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALI-LAPTRELSSQIH 240 (448)
Q Consensus 163 ~~~~~pt~~Q~~~i~~i~~g~-d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~li-l~PtreL~~qi~ 240 (448)
.||. |||||+++||.++.|+ ++++++|||||||++|.++++.. .. ....|++|| ++||||||.|++
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~----------~~~~~~rLv~~vPtReLa~Qi~ 79 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EI----------GAKVPRRLVYVVNRRTVVDQVT 79 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-cc----------cccccceEEEeCchHHHHHHHH
Confidence 4887 9999999999999998 57888999999999776555521 11 123455666 669999999999
Q ss_pred HHHHHhcccC-----------------------CcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccc----
Q 013173 241 VEAKKFSYQT-----------------------GVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARV---- 293 (448)
Q Consensus 241 ~~~~~~~~~~-----------------------~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~---- 293 (448)
+.++++++.. .+++..++||.+...+...+..+++|||+|+ |++.+..+
T Consensus 80 ~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~----D~i~sr~L~~gY 155 (844)
T TIGR02621 80 EEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTV----DMIGSRLLFSGY 155 (844)
T ss_pred HHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECH----HHHcCCcccccc
Confidence 9999998644 4889999999999999999999999999995 55554443
Q ss_pred ------------cCCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCC-CCCcEEEEEeccCchHHHHHHHhhhcCcEEE
Q 013173 294 ------------SLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPP-PGMRQTMLFSATFPKEIQRLASDFLANYIFL 360 (448)
Q Consensus 294 ------------~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~-~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i 360 (448)
.++++++||||||| ++++|.+++..|+..+..++ ...+|+++||||++.++..++..++.++..+
T Consensus 156 g~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i 233 (844)
T TIGR02621 156 GCGFKSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKH 233 (844)
T ss_pred ccccccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCcee
Confidence 27889999999999 78999999999999753221 1237999999999999999988888888777
Q ss_pred EecccccccCceeEEEEEecccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCCH
Q 013173 361 AVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQ 440 (448)
Q Consensus 361 ~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q 440 (448)
.+.........+.++ ..+++..|...++..+...... ...++||||||++.|+.|++.|...++ ..|||+|+|
T Consensus 234 ~V~~~~l~a~ki~q~-v~v~~e~Kl~~lv~~L~~ll~e----~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q 306 (844)
T TIGR02621 234 PVLKKRLAAKKIVKL-VPPSDEKFLSTMVKELNLLMKD----SGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRG 306 (844)
T ss_pred ecccccccccceEEE-EecChHHHHHHHHHHHHHHHhh----CCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCH
Confidence 766555566666664 3444455555555444332211 257899999999999999999999887 899999999
Q ss_pred HHHH
Q 013173 441 QRTS 444 (448)
Q Consensus 441 ~eR~ 444 (448)
.+|+
T Consensus 307 ~dR~ 310 (844)
T TIGR02621 307 AERD 310 (844)
T ss_pred HHHh
Confidence 9999
No 38
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.9e-35 Score=288.35 Aligned_cols=288 Identities=28% Similarity=0.376 Sum_probs=230.0
Q ss_pred CCCcccCCCCHHHHH----------HHHHCCCCCCCHHHHhHHhhHhC---------CCCeeEEccCCCCccchhhhhHH
Q 013173 144 VNTFAEIDLGEALNL----------NIRRCKYVKPTPVQRHAIPISIG---------GRDLMACAQTGSGKTAAFCFPII 204 (448)
Q Consensus 144 ~~~f~~l~L~~~l~~----------~l~~~~~~~pt~~Q~~~i~~i~~---------g~d~lv~a~TGsGKT~~~~lpil 204 (448)
...|+.+++++.+.. ++.++++....|+|..++|.++. .+|+.|.||||||||++|.|||+
T Consensus 126 lq~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIV 205 (620)
T KOG0350|consen 126 LQIFSVLGKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIV 205 (620)
T ss_pred eeeeeccchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHH
Confidence 345777776665544 49999999999999999998852 58999999999999999999999
Q ss_pred HHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHHhcC-----ccEEEe
Q 013173 205 SGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERG-----VDILVA 279 (448)
Q Consensus 205 ~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~-----~~Ilv~ 279 (448)
+.+.+.. ....+||||+||++|+.|+++.+.+++...++.|+.+.|..+...+.+.|... .||||+
T Consensus 206 Q~L~~R~---------v~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVa 276 (620)
T KOG0350|consen 206 QLLSSRP---------VKRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVA 276 (620)
T ss_pred HHHccCC---------ccceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEc
Confidence 9886543 22367999999999999999999999999999999999999988888877653 399999
Q ss_pred ChHHHHHHHhc-ccccCCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCC------------------------------
Q 013173 280 TPGRLVDLLER-ARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMP------------------------------ 328 (448)
Q Consensus 280 Tp~~l~~~l~~-~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~------------------------------ 328 (448)
|||||+++|.+ ..++|++++||||||||+|++..|..-+-.+..++...
T Consensus 277 TPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~ 356 (620)
T KOG0350|consen 277 TPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGK 356 (620)
T ss_pred CchHHHHhccCCCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCC
Confidence 99999999985 56899999999999999999876654433333333211
Q ss_pred CCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEec----ccccccCceeEEEEEecccchHHHHHHHHHHHHhcCCCCCC
Q 013173 329 PPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVG----RVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQ 404 (448)
Q Consensus 329 ~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~----~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~ 404 (448)
..+..+.++||||+..+-..+..--++.|-...+. -.......+.+++..++...|-..+..++.... .
T Consensus 357 ~~~~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~k-------~ 429 (620)
T KOG0350|consen 357 LYPPLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSNK-------L 429 (620)
T ss_pred cCchhHhhhcchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHhh-------c
Confidence 12335688999999877777777777777433332 234455667777777777788888888888764 6
Q ss_pred CcEEEEeCchhhHHHHHHHHH----HCCCCeEEecCCCCHHHHHHhh
Q 013173 405 ALTLVFVETKKGADALEHWLY----MNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 405 ~~tlVF~~t~~~a~~l~~~L~----~~g~~~~~iHg~~~q~eR~~~l 447 (448)
.++|+|+++...+..|+..|. ..++++..+.|.+++..|.+.|
T Consensus 430 ~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l 476 (620)
T KOG0350|consen 430 NRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKML 476 (620)
T ss_pred ceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHH
Confidence 779999999999999999886 3478888999999999998765
No 39
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=2.6e-34 Score=309.78 Aligned_cols=265 Identities=16% Similarity=0.227 Sum_probs=196.9
Q ss_pred CCCCHHHHHHHH-HCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEE
Q 013173 150 IDLGEALNLNIR-RCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALI 228 (448)
Q Consensus 150 l~L~~~l~~~l~-~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~li 228 (448)
++....|...++ .+||..|+|+|.++|+.++.|+|+|+++|||+|||+||++|+|.. .+.+||
T Consensus 442 fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~----------------~GiTLV 505 (1195)
T PLN03137 442 FPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC----------------PGITLV 505 (1195)
T ss_pred CCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc----------------CCcEEE
Confidence 445566666655 579999999999999999999999999999999999999999842 135999
Q ss_pred EcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHHh------cCccEEEeChHHHHH--HHhcc--cc-cCCC
Q 013173 229 LAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELE------RGVDILVATPGRLVD--LLERA--RV-SLQM 297 (448)
Q Consensus 229 l~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~------~~~~Ilv~Tp~~l~~--~l~~~--~~-~l~~ 297 (448)
|+|+++|+.++...+.. .++++..+.++....++...+. ..++|||+||++|.. .+... .+ ....
T Consensus 506 ISPLiSLmqDQV~~L~~----~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~ 581 (1195)
T PLN03137 506 ISPLVSLIQDQIMNLLQ----ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGL 581 (1195)
T ss_pred EeCHHHHHHHHHHHHHh----CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccc
Confidence 99999999877666665 3788999999998777765443 357999999999862 22211 11 2355
Q ss_pred eeEEEEcCCcccccCC--CHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhc--CcEEEEecccccccCcee
Q 013173 298 IRYLALDEADRMLDMG--FEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLA--NYIFLAVGRVGSSTDLIV 373 (448)
Q Consensus 298 v~~lVlDEah~ll~~g--f~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~--~~~~i~v~~~~~~~~~i~ 373 (448)
+.+|||||||++++|| |++.++.+-..... .+.+|+++||||++..++..+...+. ++..+ . .....+++
T Consensus 582 LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~--fp~vPilALTATAT~~V~eDI~~~L~l~~~~vf-r--~Sf~RpNL- 655 (1195)
T PLN03137 582 LARFVIDEAHCVSQWGHDFRPDYQGLGILKQK--FPNIPVLALTATATASVKEDVVQALGLVNCVVF-R--QSFNRPNL- 655 (1195)
T ss_pred cceeccCcchhhhhcccchHHHHHHHHHHHHh--CCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEe-e--cccCccce-
Confidence 8999999999999998 88988875322222 23578999999999999886666554 33222 1 12223333
Q ss_pred EEEEEecccch-HHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCCHHHHHHhh
Q 013173 374 QRVEFVHESDK-RSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 374 q~~~~~~~~~k-~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
+|..+....+ ...+.+++.... ....+||||+|++.|+.|++.|...|+++..|||+|++.+|+.++
T Consensus 656 -~y~Vv~k~kk~le~L~~~I~~~~------~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vq 723 (1195)
T PLN03137 656 -WYSVVPKTKKCLEDIDKFIKENH------FDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQ 723 (1195)
T ss_pred -EEEEeccchhHHHHHHHHHHhcc------cCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHH
Confidence 3333433322 234555554321 145689999999999999999999999999999999999999875
No 40
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=3.1e-34 Score=315.19 Aligned_cols=283 Identities=20% Similarity=0.262 Sum_probs=205.1
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcC
Q 013173 152 LGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAP 231 (448)
Q Consensus 152 L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~P 231 (448)
|++.+.+.++. +|.+|||+|+++||.+++|+|++++||||||||++|++|+++.+...... .....++++|||+|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~----~~~~~~~~~LyIsP 92 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGRE----GELEDKVYCLYVSP 92 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccc----cCCCCCeEEEEEcC
Confidence 67777777666 79999999999999999999999999999999999999999998754321 11134578999999
Q ss_pred cHHHHHHHHHHHHH-------hc----ccC-CcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccc--cCCC
Q 013173 232 TRELSSQIHVEAKK-------FS----YQT-GVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARV--SLQM 297 (448)
Q Consensus 232 treL~~qi~~~~~~-------~~----~~~-~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~--~l~~ 297 (448)
|++|+.|+++.+.. ++ ... ++++.+.+|+++..+..+.+.+.++|+|+||++|..++....+ .+++
T Consensus 93 traLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~ 172 (876)
T PRK13767 93 LRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRT 172 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhc
Confidence 99999999886653 22 222 6788999999998888778888899999999999888865543 4789
Q ss_pred eeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCch--HHHHHHHhhh----cCcEEEEecccccccCc
Q 013173 298 IRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPK--EIQRLASDFL----ANYIFLAVGRVGSSTDL 371 (448)
Q Consensus 298 v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~--~v~~l~~~~l----~~~~~i~v~~~~~~~~~ 371 (448)
+++|||||||.|++..+..++..++..+........|+++||||+++ ++..++..+. ..++.+... .. ...
T Consensus 173 l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~-~~--~k~ 249 (876)
T PRK13767 173 VKWVIVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDA-RF--VKP 249 (876)
T ss_pred CCEEEEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEcc-CC--Ccc
Confidence 99999999999998877777777666664433456899999999975 3333322211 111221110 00 011
Q ss_pred eeEEEE-------EecccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHC------CCCeEEecCCC
Q 013173 372 IVQRVE-------FVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN------GFPATTIHGDR 438 (448)
Q Consensus 372 i~q~~~-------~~~~~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~------g~~~~~iHg~~ 438 (448)
+...+. ..........+.+.+...... ..++||||||++.|+.++..|... +..+..+||+|
T Consensus 250 ~~i~v~~p~~~l~~~~~~~~~~~l~~~L~~~i~~-----~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~l 324 (876)
T PRK13767 250 FDIKVISPVDDLIHTPAEEISEALYETLHELIKE-----HRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSL 324 (876)
T ss_pred ceEEEeccCccccccccchhHHHHHHHHHHHHhc-----CCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCC
Confidence 111110 111122233444555443321 567999999999999999999862 46899999999
Q ss_pred CHHHHHHhh
Q 013173 439 TQQRTSIEI 447 (448)
Q Consensus 439 ~q~eR~~~l 447 (448)
++.+|..++
T Consensus 325 s~~~R~~ve 333 (876)
T PRK13767 325 SREVRLEVE 333 (876)
T ss_pred CHHHHHHHH
Confidence 999999875
No 41
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=2.9e-34 Score=311.43 Aligned_cols=274 Identities=20% Similarity=0.238 Sum_probs=205.6
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCCHHHHhHHhh-HhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCc
Q 013173 146 TFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPI-SIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYP 224 (448)
Q Consensus 146 ~f~~l~L~~~l~~~l~~~~~~~pt~~Q~~~i~~-i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~ 224 (448)
.|+++++++.+.+.+++.||.+|+|+|.++|+. ++.|+|+++++|||||||++|.+|+++.+... +.
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~------------~~ 69 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE------------GG 69 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc------------CC
Confidence 578899999999999999999999999999986 78999999999999999999999999887642 24
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEc
Q 013173 225 LALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALD 304 (448)
Q Consensus 225 ~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlD 304 (448)
++|||+|+++|+.|+++.++.|. ..++++..++|+...... +...++|+|+||+++..++......+++|++||||
T Consensus 70 ~~l~l~P~~aLa~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViD 145 (720)
T PRK00254 70 KAVYLVPLKALAEEKYREFKDWE-KLGLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVAD 145 (720)
T ss_pred eEEEEeChHHHHHHHHHHHHHHh-hcCCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEc
Confidence 69999999999999999999874 358899999998764322 23458999999999999988766678999999999
Q ss_pred CCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEeccccccc--CceeEEEEEeccc
Q 013173 305 EADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSST--DLIVQRVEFVHES 382 (448)
Q Consensus 305 Eah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~--~~i~q~~~~~~~~ 382 (448)
|+|.+.+.++...+..++..+ ....|++++|||+++ ..+++. ++....+....+. ... ..+.+.+....+.
T Consensus 146 E~H~l~~~~rg~~le~il~~l----~~~~qiI~lSATl~n-~~~la~-wl~~~~~~~~~rp-v~l~~~~~~~~~~~~~~~ 218 (720)
T PRK00254 146 EIHLIGSYDRGATLEMILTHM----LGRAQILGLSATVGN-AEELAE-WLNAELVVSDWRP-VKLRKGVFYQGFLFWEDG 218 (720)
T ss_pred CcCccCCccchHHHHHHHHhc----CcCCcEEEEEccCCC-HHHHHH-HhCCccccCCCCC-CcceeeEecCCeeeccCc
Confidence 999999999999999999988 556899999999975 345554 4433221111100 000 0111122222221
Q ss_pred c--h-HHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHC--------------------------------
Q 013173 383 D--K-RSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN-------------------------------- 427 (448)
Q Consensus 383 ~--k-~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~-------------------------------- 427 (448)
. + ...+..++..... .+.++||||+|++.|+.++..|...
T Consensus 219 ~~~~~~~~~~~~~~~~i~-----~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 293 (720)
T PRK00254 219 KIERFPNSWESLVYDAVK-----KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKA 293 (720)
T ss_pred chhcchHHHHHHHHHHHH-----hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHH
Confidence 1 1 1122233322221 1678999999999999888777421
Q ss_pred -CCCeEEecCCCCHHHHHHhh
Q 013173 428 -GFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 428 -g~~~~~iHg~~~q~eR~~~l 447 (448)
...+..+|++|++.+|..+.
T Consensus 294 l~~gv~~hHagl~~~eR~~ve 314 (720)
T PRK00254 294 LRGGVAFHHAGLGRTERVLIE 314 (720)
T ss_pred HhhCEEEeCCCCCHHHHHHHH
Confidence 23488999999999998764
No 42
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=7.8e-34 Score=316.33 Aligned_cols=251 Identities=23% Similarity=0.278 Sum_probs=198.7
Q ss_pred HHHH-CCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHH
Q 013173 159 NIRR-CKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSS 237 (448)
Q Consensus 159 ~l~~-~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~ 237 (448)
.+++ .|+ +|+++|+.++|.++.|+|++++||||+|||+ |.++++..+.. .++++|||+||++||.
T Consensus 72 ~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~------------~g~~alIL~PTreLa~ 137 (1176)
T PRK09401 72 FFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK------------KGKKSYIIFPTRLLVE 137 (1176)
T ss_pred HHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh------------cCCeEEEEeccHHHHH
Confidence 4443 366 8999999999999999999999999999996 55665544421 2467999999999999
Q ss_pred HHHHHHHHhcccCCcEEEEEECCCCh-----HHHHHHHhc-CccEEEeChHHHHHHHhcccccCCCeeEEEEcCCccccc
Q 013173 238 QIHVEAKKFSYQTGVKVVVAYGGAPI-----NQQLRELER-GVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLD 311 (448)
Q Consensus 238 qi~~~~~~~~~~~~~~~~~~~gg~~~-----~~~~~~l~~-~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~ 311 (448)
|+++.+++++...++.+.+++++... ..+...+.. .++|+|+||++|.+++. .+....+++|||||||+|++
T Consensus 138 Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~ 215 (1176)
T PRK09401 138 QVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLK 215 (1176)
T ss_pred HHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhh
Confidence 99999999998888888888777542 233344444 48999999999999887 45567799999999999996
Q ss_pred -----------CCCH-HHHHHHHHHcCCC--------------------CCCCcEEEEEeccCchH-HHHHHHhhhcCcE
Q 013173 312 -----------MGFE-PQIRKIVQQMDMP--------------------PPGMRQTMLFSATFPKE-IQRLASDFLANYI 358 (448)
Q Consensus 312 -----------~gf~-~~i~~i~~~l~~~--------------------~~~~~q~i~~SAT~~~~-v~~l~~~~l~~~~ 358 (448)
+||. ++|..++..+... .++.+|+++||||+++. +.. .++.++.
T Consensus 216 ~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll 292 (1176)
T PRK09401 216 SSKNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELL 292 (1176)
T ss_pred cccchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccc
Confidence 7884 6788888777320 01268999999999874 443 2345566
Q ss_pred EEEecccccccCceeEEEEEecccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhh---HHHHHHHHHHCCCCeEEec
Q 013173 359 FLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKG---ADALEHWLYMNGFPATTIH 435 (448)
Q Consensus 359 ~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~---a~~l~~~L~~~g~~~~~iH 435 (448)
.+.++.......++.|.|..+. +|...|.+++... +..+||||+|+.. |+.|+++|...|++|..+|
T Consensus 293 ~~~v~~~~~~~rnI~~~yi~~~--~k~~~L~~ll~~l--------~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~h 362 (1176)
T PRK09401 293 GFEVGSPVFYLRNIVDSYIVDE--DSVEKLVELVKRL--------GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAI 362 (1176)
T ss_pred eEEecCcccccCCceEEEEEcc--cHHHHHHHHHHhc--------CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEe
Confidence 6777777677788988887665 6777888887654 4469999999887 9999999999999999999
Q ss_pred CCC
Q 013173 436 GDR 438 (448)
Q Consensus 436 g~~ 438 (448)
|+|
T Consensus 363 g~l 365 (1176)
T PRK09401 363 SGF 365 (1176)
T ss_pred CcH
Confidence 999
No 43
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=7.7e-34 Score=294.10 Aligned_cols=253 Identities=17% Similarity=0.211 Sum_probs=188.5
Q ss_pred HCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHH
Q 013173 162 RCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHV 241 (448)
Q Consensus 162 ~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~ 241 (448)
.+||.+|+|+|.++|+.+++|+|+++++|||+|||++|++|++.. ...+|||+||++|+.|+++
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~----------------~~~~lVi~P~~~L~~dq~~ 69 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS----------------DGITLVISPLISLMEDQVL 69 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc----------------CCcEEEEecHHHHHHHHHH
Confidence 579999999999999999999999999999999999999998841 1349999999999999999
Q ss_pred HHHHhcccCCcEEEEEECCCChHHHHH---HHhc-CccEEEeChHHHHHHH-hcccc-cCCCeeEEEEcCCcccccCC--
Q 013173 242 EAKKFSYQTGVKVVVAYGGAPINQQLR---ELER-GVDILVATPGRLVDLL-ERARV-SLQMIRYLALDEADRMLDMG-- 313 (448)
Q Consensus 242 ~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~~-~~~Ilv~Tp~~l~~~l-~~~~~-~l~~v~~lVlDEah~ll~~g-- 313 (448)
.+..+ ++.+..+.++....++.. .+.. .++|+|+||+++.... ....+ ...++++|||||||++++||
T Consensus 70 ~l~~~----gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~ 145 (470)
T TIGR00614 70 QLKAS----GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHD 145 (470)
T ss_pred HHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccc
Confidence 98874 677777777766553322 2222 4899999999985422 11112 56889999999999999997
Q ss_pred CHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhh--cCcEEEEecccccccCceeEEEEEeccc-chHHHHHH
Q 013173 314 FEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFL--ANYIFLAVGRVGSSTDLIVQRVEFVHES-DKRSHLMD 390 (448)
Q Consensus 314 f~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l--~~~~~i~v~~~~~~~~~i~q~~~~~~~~-~k~~~L~~ 390 (448)
|++.+..+...... .+..|+++||||+++.+...+...+ .++..+.. ....+++. +...... .....+.+
T Consensus 146 fr~~~~~l~~l~~~--~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~---s~~r~nl~--~~v~~~~~~~~~~l~~ 218 (470)
T TIGR00614 146 FRPDYKALGSLKQK--FPNVPIMALTATASPSVREDILRQLNLKNPQIFCT---SFDRPNLY--YEVRRKTPKILEDLLR 218 (470)
T ss_pred cHHHHHHHHHHHHH--cCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeC---CCCCCCcE--EEEEeCCccHHHHHHH
Confidence 78887765433322 2356899999999999877666654 34433322 12223332 2222222 34455666
Q ss_pred HHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCCHHHHHHhh
Q 013173 391 LLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 391 ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
++.... .+..+||||+|+++|+.+++.|...|+.+..+||+|++.+|++++
T Consensus 219 ~l~~~~------~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~ 269 (470)
T TIGR00614 219 FIRKEF------KGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVH 269 (470)
T ss_pred HHHHhc------CCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHH
Confidence 665321 255679999999999999999999999999999999999999875
No 44
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=3.7e-34 Score=311.28 Aligned_cols=274 Identities=24% Similarity=0.246 Sum_probs=202.1
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCCHHHHhHHhh-HhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCc
Q 013173 146 TFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPI-SIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYP 224 (448)
Q Consensus 146 ~f~~l~L~~~l~~~l~~~~~~~pt~~Q~~~i~~-i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~ 224 (448)
.|++++|++.+.+.+.+.||.+|+|+|.++++. ++.++|++++||||||||++|.+|+++.+.. +.
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~-------------~~ 68 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR-------------GG 68 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc-------------CC
Confidence 578999999999999999999999999999998 6789999999999999999999999988742 23
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEc
Q 013173 225 LALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALD 304 (448)
Q Consensus 225 ~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlD 304 (448)
++|||+||++||.|+++.++++.. .++++..++|+...... ....++|+|+||+++..++.+....++++++||+|
T Consensus 69 kal~i~P~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViD 144 (737)
T PRK02362 69 KALYIVPLRALASEKFEEFERFEE-LGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVD 144 (737)
T ss_pred cEEEEeChHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEE
Confidence 599999999999999999998754 47899998888764332 22357999999999999998766668999999999
Q ss_pred CCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcC-------cEEEEeccc--cc-ccCceeE
Q 013173 305 EADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLAN-------YIFLAVGRV--GS-STDLIVQ 374 (448)
Q Consensus 305 Eah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~-------~~~i~v~~~--~~-~~~~i~q 374 (448)
|+|.+.+.++.+.++.++..+... ....|+++||||+++. .+++..+-.. |+.+..... .. .... .+
T Consensus 145 E~H~l~d~~rg~~le~il~rl~~~-~~~~qii~lSATl~n~-~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~-~~ 221 (737)
T PRK02362 145 EVHLIDSANRGPTLEVTLAKLRRL-NPDLQVVALSATIGNA-DELADWLDAELVDSEWRPIDLREGVFYGGAIHFDD-SQ 221 (737)
T ss_pred CccccCCCcchHHHHHHHHHHHhc-CCCCcEEEEcccCCCH-HHHHHHhCCCcccCCCCCCCCeeeEecCCeecccc-cc
Confidence 999999989999999888877543 3458999999999752 3333222111 111111000 00 0000 00
Q ss_pred EEEEecccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCC--------------------------
Q 013173 375 RVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNG-------------------------- 428 (448)
Q Consensus 375 ~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g-------------------------- 428 (448)
. .+....+ .....++..... .++++||||+|++.|+.++..|....
T Consensus 222 ~--~~~~~~~-~~~~~~~~~~~~-----~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 293 (737)
T PRK02362 222 R--EVEVPSK-DDTLNLVLDTLE-----EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTE 293 (737)
T ss_pred c--cCCCccc-hHHHHHHHHHHH-----cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCcc
Confidence 0 1111111 122222222211 26789999999999999998886431
Q ss_pred ----------CCeEEecCCCCHHHHHHhh
Q 013173 429 ----------FPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 429 ----------~~~~~iHg~~~q~eR~~~l 447 (448)
..+..+|++|++.+|+.+.
T Consensus 294 ~~~~L~~~l~~gva~hHagl~~~eR~~ve 322 (737)
T PRK02362 294 TSKDLADCVAKGAAFHHAGLSREHRELVE 322 (737)
T ss_pred ccHHHHHHHHhCEEeecCCCCHHHHHHHH
Confidence 3578999999999998764
No 45
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=7e-33 Score=294.84 Aligned_cols=252 Identities=19% Similarity=0.256 Sum_probs=197.2
Q ss_pred HCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHH
Q 013173 162 RCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHV 241 (448)
Q Consensus 162 ~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~ 241 (448)
.+||.+|+|+|.++|+.++.|+|+++++|||+|||+||++|++.. ...+|||+|+++|+.|+++
T Consensus 8 ~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~----------------~g~~lVisPl~sL~~dq~~ 71 (591)
T TIGR01389 8 TFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL----------------KGLTVVISPLISLMKDQVD 71 (591)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc----------------CCcEEEEcCCHHHHHHHHH
Confidence 479999999999999999999999999999999999999998831 1248999999999999999
Q ss_pred HHHHhcccCCcEEEEEECCCChHHHHHHH----hcCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcccccCC--CH
Q 013173 242 EAKKFSYQTGVKVVVAYGGAPINQQLREL----ERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMG--FE 315 (448)
Q Consensus 242 ~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~g--f~ 315 (448)
.++.+ ++.+..+.++.+..+....+ ...++|+++||++|........+...++++|||||||++++|| |+
T Consensus 72 ~l~~~----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~fr 147 (591)
T TIGR01389 72 QLRAA----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFR 147 (591)
T ss_pred HHHHc----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccH
Confidence 99885 57788888887765543322 2358999999999975443344556789999999999999987 88
Q ss_pred HHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhc--CcEEEEecccccccCceeEEEEEecccchHHHHHHHHH
Q 013173 316 PQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLA--NYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLH 393 (448)
Q Consensus 316 ~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~--~~~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~ 393 (448)
+.+..+.......+ ..++++||||.+..+...+...+. ++..+ +. .....++ .+..+....+...+.+++.
T Consensus 148 p~y~~l~~l~~~~~--~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~-~~--~~~r~nl--~~~v~~~~~~~~~l~~~l~ 220 (591)
T TIGR01389 148 PEYQRLGSLAERFP--QVPRIALTATADAETRQDIRELLRLADANEF-IT--SFDRPNL--RFSVVKKNNKQKFLLDYLK 220 (591)
T ss_pred HHHHHHHHHHHhCC--CCCEEEEEeCCCHHHHHHHHHHcCCCCCCeE-ec--CCCCCCc--EEEEEeCCCHHHHHHHHHH
Confidence 88877765543322 244999999999999877776654 33222 11 1122333 3444455667777888877
Q ss_pred HHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCCHHHHHHhh
Q 013173 394 AQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 394 ~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
... +.++||||+|++.|+.+++.|...|+++..+||+|++++|+.++
T Consensus 221 ~~~-------~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~ 267 (591)
T TIGR01389 221 KHR-------GQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQ 267 (591)
T ss_pred hcC-------CCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHH
Confidence 543 56799999999999999999999999999999999999999875
No 46
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=1.2e-32 Score=292.70 Aligned_cols=257 Identities=19% Similarity=0.206 Sum_probs=192.1
Q ss_pred HHHHH-HCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHH
Q 013173 157 NLNIR-RCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTREL 235 (448)
Q Consensus 157 ~~~l~-~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL 235 (448)
.+.++ .+||.+|+|+|+++|+.+++|+|+++++|||+|||++|++|++.. ...+|||+|+++|
T Consensus 14 ~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~----------------~g~tlVisPl~sL 77 (607)
T PRK11057 14 KQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL----------------DGLTLVVSPLISL 77 (607)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc----------------CCCEEEEecHHHH
Confidence 33443 369999999999999999999999999999999999999999842 1248999999999
Q ss_pred HHHHHHHHHHhcccCCcEEEEEECCCChHHHHHH---Hhc-CccEEEeChHHHHHHHhcccccCCCeeEEEEcCCccccc
Q 013173 236 SSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRE---LER-GVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLD 311 (448)
Q Consensus 236 ~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~~-~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~ 311 (448)
+.|+.+.++.+ ++.+..+.++......... +.. ..+|+|+||++|........+...++++|||||||++++
T Consensus 78 ~~dqv~~l~~~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~ 153 (607)
T PRK11057 78 MKDQVDQLLAN----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQ 153 (607)
T ss_pred HHHHHHHHHHc----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCcccccc
Confidence 99999998875 5677777777665544332 222 378999999999742222233456789999999999999
Q ss_pred CC--CHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhh--cCcEEEEecccccccCceeEEEEEecccchHHH
Q 013173 312 MG--FEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFL--ANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSH 387 (448)
Q Consensus 312 ~g--f~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l--~~~~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~ 387 (448)
|| |++.+..+-..... .+..++++||||++..+...+...+ .++... +.. ...+++ .+..+....+...
T Consensus 154 ~G~~fr~~y~~L~~l~~~--~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~-~~~--~~r~nl--~~~v~~~~~~~~~ 226 (607)
T PRK11057 154 WGHDFRPEYAALGQLRQR--FPTLPFMALTATADDTTRQDIVRLLGLNDPLIQ-ISS--FDRPNI--RYTLVEKFKPLDQ 226 (607)
T ss_pred ccCcccHHHHHHHHHHHh--CCCCcEEEEecCCChhHHHHHHHHhCCCCeEEE-ECC--CCCCcc--eeeeeeccchHHH
Confidence 87 78877665433222 1357899999999998876555543 344332 211 122333 3334444455566
Q ss_pred HHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCCHHHHHHhh
Q 013173 388 LMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 388 L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
+..++.... +.++||||+|+++|+.++..|...|+.+..+||+|++.+|++++
T Consensus 227 l~~~l~~~~-------~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~ 279 (607)
T PRK11057 227 LMRYVQEQR-------GKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQ 279 (607)
T ss_pred HHHHHHhcC-------CCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHH
Confidence 666665432 67899999999999999999999999999999999999999875
No 47
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=100.00 E-value=8.1e-33 Score=255.25 Aligned_cols=202 Identities=53% Similarity=0.815 Sum_probs=185.1
Q ss_pred cccCCCCHHHHHHHHHCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceE
Q 013173 147 FAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLA 226 (448)
Q Consensus 147 f~~l~L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~ 226 (448)
|+++++++.+.+.+.++++..|+++|+++++.+.+++|+++++|||+|||++|++|+++.+.... ...++++
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~--------~~~~~~v 72 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP--------KKDGPQA 72 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc--------ccCCceE
Confidence 67899999999999999999999999999999999999999999999999999999999887652 1235789
Q ss_pred EEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEcCC
Q 013173 227 LILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEA 306 (448)
Q Consensus 227 lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEa 306 (448)
||++||++|+.|+...++.+....++++..++|+.........+..+++|+|+||+.|.+++.+....+.+++++|+|||
T Consensus 73 iii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~ 152 (203)
T cd00268 73 LILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEA 152 (203)
T ss_pred EEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeCh
Confidence 99999999999999999999877789999999999987777777778999999999999999888888999999999999
Q ss_pred cccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEE
Q 013173 307 DRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFL 360 (448)
Q Consensus 307 h~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i 360 (448)
|.+.+.+|...+..++..+ +..+|++++|||+++.+..++..++.+++++
T Consensus 153 h~~~~~~~~~~~~~~~~~l----~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 153 DRMLDMGFEDQIREILKLL----PKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred HHhhccChHHHHHHHHHhC----CcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 9999989999999999988 5579999999999999999999999998876
No 48
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=3.4e-32 Score=303.61 Aligned_cols=257 Identities=19% Similarity=0.289 Sum_probs=196.2
Q ss_pred HHHHHHHHHCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcH
Q 013173 154 EALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTR 233 (448)
Q Consensus 154 ~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr 233 (448)
.++.+.+.+....+|+++|+.++|.++.|+|++++||||||||+ |.+|++..+.. .++++|||+||+
T Consensus 65 ~~f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~------------~g~~vLIL~PTr 131 (1171)
T TIGR01054 65 KEFEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK------------KGKRCYIILPTT 131 (1171)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh------------cCCeEEEEeCHH
Confidence 44555566555668999999999999999999999999999997 77777665532 136799999999
Q ss_pred HHHHHHHHHHHHhcccCCcEEE---EEECCCChHHHH---HHHhc-CccEEEeChHHHHHHHhcccccCCCeeEEEEcCC
Q 013173 234 ELSSQIHVEAKKFSYQTGVKVV---VAYGGAPINQQL---RELER-GVDILVATPGRLVDLLERARVSLQMIRYLALDEA 306 (448)
Q Consensus 234 eL~~qi~~~~~~~~~~~~~~~~---~~~gg~~~~~~~---~~l~~-~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEa 306 (448)
+||.|+++.+++++...++.+. +++|+.+..++. ..+.+ +++|||+||++|.+++.... . +++++|||||
T Consensus 132 eLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~--~-~~~~iVvDEa 208 (1171)
T TIGR01054 132 LLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG--P-KFDFIFVDDV 208 (1171)
T ss_pred HHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc--C-CCCEEEEeCh
Confidence 9999999999999877666543 467888876543 33444 49999999999998876522 2 8999999999
Q ss_pred ccccc-----------CCCHHH-HHHHHHHcC-------------------CCCCCCcE--EEEEecc-CchHHHHHHHh
Q 013173 307 DRMLD-----------MGFEPQ-IRKIVQQMD-------------------MPPPGMRQ--TMLFSAT-FPKEIQRLASD 352 (448)
Q Consensus 307 h~ll~-----------~gf~~~-i~~i~~~l~-------------------~~~~~~~q--~i~~SAT-~~~~v~~l~~~ 352 (448)
|+|++ +||.++ +..|++.+. .. +..+| +++|||| +|..+.. .
T Consensus 209 D~~L~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~q~~li~~SAT~~p~~~~~---~ 284 (1171)
T TIGR01054 209 DALLKASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAI-PGKKRGCLIVSSATGRPRGKRA---K 284 (1171)
T ss_pred HhhhhccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhh-hhccCcEEEEEeCCCCccccHH---H
Confidence 99998 788774 566543321 11 33444 6779999 5766543 3
Q ss_pred hhcCcEEEEecccccccCceeEEEEEecccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCch---hhHHHHHHHHHHCCC
Q 013173 353 FLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETK---KGADALEHWLYMNGF 429 (448)
Q Consensus 353 ~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~---~~a~~l~~~L~~~g~ 429 (448)
++.+...+.++.......++.+.+..+.. +...|.+++... +..+||||+|+ +.|+.|++.|...|+
T Consensus 285 l~r~ll~~~v~~~~~~~r~I~~~~~~~~~--~~~~L~~ll~~l--------~~~~IVFv~t~~~~~~a~~l~~~L~~~g~ 354 (1171)
T TIGR01054 285 LFRELLGFEVGGGSDTLRNVVDVYVEDED--LKETLLEIVKKL--------GTGGIVYVSIDYGKEKAEEIAEFLENHGV 354 (1171)
T ss_pred HcccccceEecCccccccceEEEEEeccc--HHHHHHHHHHHc--------CCCEEEEEeccccHHHHHHHHHHHHhCCc
Confidence 44566667777776777888888765443 355677777653 45689999999 999999999999999
Q ss_pred CeEEecCCCCH
Q 013173 430 PATTIHGDRTQ 440 (448)
Q Consensus 430 ~~~~iHg~~~q 440 (448)
+|..+||++++
T Consensus 355 ~a~~lhg~~~~ 365 (1171)
T TIGR01054 355 KAVAYHATKPK 365 (1171)
T ss_pred eEEEEeCCCCH
Confidence 99999999975
No 49
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=2.9e-32 Score=288.52 Aligned_cols=279 Identities=23% Similarity=0.271 Sum_probs=218.4
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcC
Q 013173 152 LGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAP 231 (448)
Q Consensus 152 L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~P 231 (448)
|++.+.+.++.. |.+|||.|.++||.+.+|+|++++||||||||+++.||+|+.+.+... .....+..||+|+|
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~-----~~~~~~i~~lYIsP 81 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGK-----GKLEDGIYALYISP 81 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccC-----CCCCCceEEEEeCc
Confidence 788999999986 999999999999999999999999999999999999999999998741 12244578999999
Q ss_pred cHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccc--cCCCeeEEEEcCCccc
Q 013173 232 TRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARV--SLQMIRYLALDEADRM 309 (448)
Q Consensus 232 treL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~--~l~~v~~lVlDEah~l 309 (448)
.|+|..++...++......|+.+.+.+|.++..+..+...+.+||||+||+.|.-++...++ .|.+|++|||||+|.+
T Consensus 82 LkALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel 161 (814)
T COG1201 82 LKALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHAL 161 (814)
T ss_pred HHHHHHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhh
Confidence 99999999999999999999999999999998888888888999999999999888865443 5899999999999999
Q ss_pred ccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcC--cEEEEecccccccCceeEEEEEeccc-----
Q 013173 310 LDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLAN--YIFLAVGRVGSSTDLIVQRVEFVHES----- 382 (448)
Q Consensus 310 l~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~--~~~i~v~~~~~~~~~i~q~~~~~~~~----- 382 (448)
.+.-...++.--++.+....+ +.|.|++|||..+. ..+++.+... ++.+..... .......+......
T Consensus 162 ~~sKRG~~Lsl~LeRL~~l~~-~~qRIGLSATV~~~-~~varfL~g~~~~~~Iv~~~~---~k~~~i~v~~p~~~~~~~~ 236 (814)
T COG1201 162 AESKRGVQLALSLERLRELAG-DFQRIGLSATVGPP-EEVAKFLVGFGDPCEIVDVSA---AKKLEIKVISPVEDLIYDE 236 (814)
T ss_pred hccccchhhhhhHHHHHhhCc-ccEEEeehhccCCH-HHHHHHhcCCCCceEEEEccc---CCcceEEEEecCCcccccc
Confidence 887777777777777766555 88999999999633 3333333332 333322111 11112222221111
Q ss_pred chHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCC-CCeEEecCCCCHHHHHHh
Q 013173 383 DKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNG-FPATTIHGDRTQQRTSIE 446 (448)
Q Consensus 383 ~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g-~~~~~iHg~~~q~eR~~~ 446 (448)
.-...+++.+.....+ ...||||+||+..|+.|+..|.+.+ .++...||.++.++|..+
T Consensus 237 ~~~~~~~~~i~~~v~~-----~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~v 296 (814)
T COG1201 237 ELWAALYERIAELVKK-----HRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEV 296 (814)
T ss_pred chhHHHHHHHHHHHhh-----cCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHH
Confidence 1223344444444322 4479999999999999999999987 899999999999999764
No 50
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=4.3e-32 Score=308.32 Aligned_cols=256 Identities=21% Similarity=0.247 Sum_probs=195.7
Q ss_pred HHHHHHHHH-CCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCc
Q 013173 154 EALNLNIRR-CKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPT 232 (448)
Q Consensus 154 ~~l~~~l~~-~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Pt 232 (448)
.++.+.+++ +|| +|+++|+.+||.++.|+|++++||||+|||++++++++.... .++++|||+||
T Consensus 66 ~~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~-------------~g~~aLVl~PT 131 (1638)
T PRK14701 66 EEFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLAL-------------KGKKCYIILPT 131 (1638)
T ss_pred HHHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHh-------------cCCeEEEEECH
Confidence 345556665 799 699999999999999999999999999999976666553321 23579999999
Q ss_pred HHHHHHHHHHHHHhcccC--CcEEEEEECCCChHHHHH---HHhcC-ccEEEeChHHHHHHHhcccccCCCeeEEEEcCC
Q 013173 233 RELSSQIHVEAKKFSYQT--GVKVVVAYGGAPINQQLR---ELERG-VDILVATPGRLVDLLERARVSLQMIRYLALDEA 306 (448)
Q Consensus 233 reL~~qi~~~~~~~~~~~--~~~~~~~~gg~~~~~~~~---~l~~~-~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEa 306 (448)
++|+.|+++.++.++... ++++..++|+.+..++.. .+..+ ++|||+||++|.+.+.... ..++++||||||
T Consensus 132 reLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l~--~~~i~~iVVDEA 209 (1638)
T PRK14701 132 TLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEMK--HLKFDFIFVDDV 209 (1638)
T ss_pred HHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHHh--hCCCCEEEEECc
Confidence 999999999999988654 467778889988776643 34444 8999999999998776432 277999999999
Q ss_pred ccccc-----------CCCHHHHHH----HHHH-------------------cCCCCCCCcE-EEEEeccCchHHHHHHH
Q 013173 307 DRMLD-----------MGFEPQIRK----IVQQ-------------------MDMPPPGMRQ-TMLFSATFPKEIQRLAS 351 (448)
Q Consensus 307 h~ll~-----------~gf~~~i~~----i~~~-------------------l~~~~~~~~q-~i~~SAT~~~~v~~l~~ 351 (448)
|+|++ +||.+++.. |+.. +... +..+| ++++|||++..-. ..
T Consensus 210 D~ml~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~ll~~SAT~~~r~~--~~ 286 (1638)
T PRK14701 210 DAFLKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKI-GNKIGCLIVASATGKAKGD--RV 286 (1638)
T ss_pred eeccccccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhc-CCCccEEEEEecCCCchhH--HH
Confidence 99987 589988875 4321 0011 33444 6789999986311 12
Q ss_pred hhhcCcEEEEecccccccCceeEEEEEecccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhh---HHHHHHHHHHCC
Q 013173 352 DFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKG---ADALEHWLYMNG 428 (448)
Q Consensus 352 ~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~---a~~l~~~L~~~g 428 (448)
.++.++..+.++.......++.|.|..+....| ..|.+++... +..+||||+|++. |+.|+++|...|
T Consensus 287 ~l~~~~l~f~v~~~~~~lr~i~~~yi~~~~~~k-~~L~~ll~~~--------g~~gIVF~~t~~~~e~ae~la~~L~~~G 357 (1638)
T PRK14701 287 KLYRELLGFEVGSGRSALRNIVDVYLNPEKIIK-EHVRELLKKL--------GKGGLIFVPIDEGAEKAEEIEKYLLEDG 357 (1638)
T ss_pred HHhhcCeEEEecCCCCCCCCcEEEEEECCHHHH-HHHHHHHHhC--------CCCeEEEEeccccchHHHHHHHHHHHCC
Confidence 344677777777777777889988877655544 5677777653 3468999999875 589999999999
Q ss_pred CCeEEecCC
Q 013173 429 FPATTIHGD 437 (448)
Q Consensus 429 ~~~~~iHg~ 437 (448)
++|..+||+
T Consensus 358 i~a~~~h~~ 366 (1638)
T PRK14701 358 FKIELVSAK 366 (1638)
T ss_pred CeEEEecch
Confidence 999999997
No 51
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=5.3e-32 Score=292.27 Aligned_cols=272 Identities=15% Similarity=0.193 Sum_probs=201.5
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCce
Q 013173 146 TFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPL 225 (448)
Q Consensus 146 ~f~~l~L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~ 225 (448)
.|.+++|++.+.+.+...+|. ++++|+++++.+..++|++++||||||||+++.++++..+... .+
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~~-------------~k 67 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLAG-------------LK 67 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHhC-------------Cc
Confidence 478899999999999998886 9999999999999999999999999999999999999876432 35
Q ss_pred EEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEcC
Q 013173 226 ALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDE 305 (448)
Q Consensus 226 ~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDE 305 (448)
+||++|+++||.|+++.++++. ..++++...+|+...... ....++|+|+||+++..++.+....++++++|||||
T Consensus 68 ~v~i~P~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDE 143 (674)
T PRK01172 68 SIYIVPLRSLAMEKYEELSRLR-SLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADE 143 (674)
T ss_pred EEEEechHHHHHHHHHHHHHHh-hcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEec
Confidence 9999999999999999999864 357888888887654322 224589999999999999888776789999999999
Q ss_pred CcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEecccccccCceeEEEE-----Eec
Q 013173 306 ADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVE-----FVH 380 (448)
Q Consensus 306 ah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~-----~~~ 380 (448)
||++.+.++.+.++.++..+... ....|+|+||||+++ ..+++. ++....+... ..+. .+...+. +.+
T Consensus 144 aH~l~d~~rg~~le~ll~~~~~~-~~~~riI~lSATl~n-~~~la~-wl~~~~~~~~---~r~v-pl~~~i~~~~~~~~~ 216 (674)
T PRK01172 144 IHIIGDEDRGPTLETVLSSARYV-NPDARILALSATVSN-ANELAQ-WLNASLIKSN---FRPV-PLKLGILYRKRLILD 216 (674)
T ss_pred chhccCCCccHHHHHHHHHHHhc-CcCCcEEEEeCccCC-HHHHHH-HhCCCccCCC---CCCC-CeEEEEEecCeeeec
Confidence 99999988888888887766433 346889999999975 344544 3322211100 0011 1111010 111
Q ss_pred ccch-HHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCC-------------------------CCeEEe
Q 013173 381 ESDK-RSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNG-------------------------FPATTI 434 (448)
Q Consensus 381 ~~~k-~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g-------------------------~~~~~i 434 (448)
...+ ...+..++..... +++++||||+|++.|+.++..|.... ..+..+
T Consensus 217 ~~~~~~~~~~~~i~~~~~-----~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~ 291 (674)
T PRK01172 217 GYERSQVDINSLIKETVN-----DGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFH 291 (674)
T ss_pred ccccccccHHHHHHHHHh-----CCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEe
Confidence 1111 1123334443221 26789999999999999999986531 137789
Q ss_pred cCCCCHHHHHHhh
Q 013173 435 HGDRTQQRTSIEI 447 (448)
Q Consensus 435 Hg~~~q~eR~~~l 447 (448)
||+|++++|+.+.
T Consensus 292 hagl~~~eR~~ve 304 (674)
T PRK01172 292 HAGLSNEQRRFIE 304 (674)
T ss_pred cCCCCHHHHHHHH
Confidence 9999999998764
No 52
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.98 E-value=1.7e-30 Score=289.05 Aligned_cols=255 Identities=16% Similarity=0.137 Sum_probs=194.2
Q ss_pred HHHHHHHHHCCCCCCCHHHHhHHhhHhCC------CCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEE
Q 013173 154 EALNLNIRRCKYVKPTPVQRHAIPISIGG------RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLAL 227 (448)
Q Consensus 154 ~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g------~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~l 227 (448)
....+....+.| +||++|..+|+.++.+ +|+++|++||+|||.+|+.+++..+. .+++++
T Consensus 588 ~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~-------------~g~qvl 653 (1147)
T PRK10689 588 EQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE-------------NHKQVA 653 (1147)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH-------------cCCeEE
Confidence 344455567777 7999999999999887 89999999999999999988876542 235799
Q ss_pred EEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHHh----cCccEEEeChHHHHHHHhcccccCCCeeEEEE
Q 013173 228 ILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELE----RGVDILVATPGRLVDLLERARVSLQMIRYLAL 303 (448)
Q Consensus 228 il~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~----~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVl 303 (448)
||+||++||.|+++.++++....++++.+++++.+..++...+. ..++|||+||+.| . ..+.++++.+|||
T Consensus 654 vLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL----~-~~v~~~~L~lLVI 728 (1147)
T PRK10689 654 VLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL----Q-SDVKWKDLGLLIV 728 (1147)
T ss_pred EEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH----h-CCCCHhhCCEEEE
Confidence 99999999999999999877667889988899888777665443 2589999999643 2 3456789999999
Q ss_pred cCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEecccccccCceeEEEEEecccc
Q 013173 304 DEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESD 383 (448)
Q Consensus 304 DEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~~ 383 (448)
||+|++ |+. ....+..+ +..+|+++||||+.+.+..++...+.++..+...... ...+.+.+......
T Consensus 729 DEahrf---G~~--~~e~lk~l----~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~--r~~v~~~~~~~~~~- 796 (1147)
T PRK10689 729 DEEHRF---GVR--HKERIKAM----RADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR--RLAVKTFVREYDSL- 796 (1147)
T ss_pred echhhc---chh--HHHHHHhc----CCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCC--CCCceEEEEecCcH-
Confidence 999997 432 23445555 5678999999999888888888888888877653322 12334333332221
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHC--CCCeEEecCCCCHHHHHHhh
Q 013173 384 KRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN--GFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 384 k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~--g~~~~~iHg~~~q~eR~~~l 447 (448)
.....++.... .+++++||||+++.++.+++.|... ++.+..+||+|++.+|+++|
T Consensus 797 --~~k~~il~el~------r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im 854 (1147)
T PRK10689 797 --VVREAILREIL------RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVM 854 (1147)
T ss_pred --HHHHHHHHHHh------cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHH
Confidence 11122222222 1567999999999999999999887 78999999999999999886
No 53
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.97 E-value=3e-30 Score=281.59 Aligned_cols=257 Identities=16% Similarity=0.141 Sum_probs=191.2
Q ss_pred CCHHHHHHHH-HCCCCCCCHHHHhHHhhHhCC------CCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCc
Q 013173 152 LGEALNLNIR-RCKYVKPTPVQRHAIPISIGG------RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYP 224 (448)
Q Consensus 152 L~~~l~~~l~-~~~~~~pt~~Q~~~i~~i~~g------~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~ 224 (448)
.+..+.+.+. .++| +|||+|..+|+.++++ +|+++||+||||||.+|++|++..+.. ++
T Consensus 436 ~~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~-------------g~ 501 (926)
T TIGR00580 436 PDLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD-------------GK 501 (926)
T ss_pred CCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh-------------CC
Confidence 4455555555 4677 5999999999999875 799999999999999999999987743 24
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHH---HHHhc-CccEEEeChHHHHHHHhcccccCCCeeE
Q 013173 225 LALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQL---RELER-GVDILVATPGRLVDLLERARVSLQMIRY 300 (448)
Q Consensus 225 ~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~---~~l~~-~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~ 300 (448)
+++||+||++||.|+++.++++....++++..++++.+..++. ..+.. .++|||+||.. + ...+.++++++
T Consensus 502 qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~l----l-~~~v~f~~L~l 576 (926)
T TIGR00580 502 QVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKL----L-QKDVKFKDLGL 576 (926)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHH----h-hCCCCcccCCE
Confidence 6999999999999999999998877889999998887755443 33444 48999999942 2 34567899999
Q ss_pred EEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEecccccccCceeEEEEEec
Q 013173 301 LALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVH 380 (448)
Q Consensus 301 lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~ 380 (448)
|||||+|++ .......+..+ +...|+++||||+.+....+....+.++..+.....+ ...+.+++....
T Consensus 577 lVIDEahrf-----gv~~~~~L~~~----~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~--R~~V~t~v~~~~ 645 (926)
T TIGR00580 577 LIIDEEQRF-----GVKQKEKLKEL----RTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPED--RLPVRTFVMEYD 645 (926)
T ss_pred EEeeccccc-----chhHHHHHHhc----CCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCC--ccceEEEEEecC
Confidence 999999985 23344555555 5568999999998777766666666676666543222 123444333221
Q ss_pred ccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHC--CCCeEEecCCCCHHHHHHhh
Q 013173 381 ESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN--GFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 381 ~~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~--g~~~~~iHg~~~q~eR~~~l 447 (448)
. ..+.+.+..... .+++++|||++++.++.+++.|... ++++..+||+|++.+|++++
T Consensus 646 ~----~~i~~~i~~el~-----~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im 705 (926)
T TIGR00580 646 P----ELVREAIRRELL-----RGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVM 705 (926)
T ss_pred H----HHHHHHHHHHHH-----cCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHH
Confidence 1 122222222111 1678999999999999999999885 78999999999999999886
No 54
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.97 E-value=1.2e-29 Score=284.04 Aligned_cols=251 Identities=20% Similarity=0.239 Sum_probs=173.8
Q ss_pred EEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhc------------ccCCcEE
Q 013173 187 ACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFS------------YQTGVKV 254 (448)
Q Consensus 187 v~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~------------~~~~~~~ 254 (448)
|+||||||||++|.||+|+.++..............++++|||+|+++|+.|+++.++... ...++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5899999999999999999998643111000011245789999999999999999987521 1347899
Q ss_pred EEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcc-cccCCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCc
Q 013173 255 VVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA-RVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMR 333 (448)
Q Consensus 255 ~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~-~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~ 333 (448)
.+.+|+++..++.+.+.+.+||||+||++|..++.+. ...+++|++|||||+|.|++..+..++..+++.+....+.+.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 9999999988887777888999999999999987653 346899999999999999986555555555555543335678
Q ss_pred EEEEEeccCchHHHHHHHhhhc--CcEEEEecccccccCceeEEEEEecccch----------------H----HHH-HH
Q 013173 334 QTMLFSATFPKEIQRLASDFLA--NYIFLAVGRVGSSTDLIVQRVEFVHESDK----------------R----SHL-MD 390 (448)
Q Consensus 334 q~i~~SAT~~~~v~~l~~~~l~--~~~~i~v~~~~~~~~~i~q~~~~~~~~~k----------------~----~~L-~~ 390 (448)
|+|+||||+++ ..+++ .|+. +++.+.. ........+. .+..+.+..+ . ..+ ..
T Consensus 161 QrIgLSATI~n-~eevA-~~L~g~~pv~Iv~-~~~~r~~~l~-v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~ 236 (1490)
T PRK09751 161 QRIGLSATVRS-ASDVA-AFLGGDRPVTVVN-PPAMRHPQIR-IVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETG 236 (1490)
T ss_pred eEEEEEeeCCC-HHHHH-HHhcCCCCEEEEC-CCCCcccceE-EEEecCchhhccccccccccccchhhhhhhhHHHHHH
Confidence 99999999987 35555 4543 3544432 1111111222 2222211110 0 011 12
Q ss_pred HHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCC---------------------------------CCeEEecCC
Q 013173 391 LLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNG---------------------------------FPATTIHGD 437 (448)
Q Consensus 391 ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g---------------------------------~~~~~iHg~ 437 (448)
++.... ...+|||||||++.|+.++..|++.. +.+.++||+
T Consensus 237 il~~i~------~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGs 310 (1490)
T PRK09751 237 ILDEVL------RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGS 310 (1490)
T ss_pred HHHHHh------cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeecccc
Confidence 222211 15679999999999999999997641 226789999
Q ss_pred CCHHHHHHhh
Q 013173 438 RTQQRTSIEI 447 (448)
Q Consensus 438 ~~q~eR~~~l 447 (448)
|++++|..+.
T Consensus 311 LSkeeR~~IE 320 (1490)
T PRK09751 311 VSKEQRAITE 320 (1490)
T ss_pred CCHHHHHHHH
Confidence 9999999874
No 55
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.97 E-value=2.8e-30 Score=248.06 Aligned_cols=226 Identities=25% Similarity=0.417 Sum_probs=173.6
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHhcc---cCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCe
Q 013173 222 VYPLALILAPTRELSSQIHVEAKKFSY---QTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMI 298 (448)
Q Consensus 222 ~~~~~lil~PtreL~~qi~~~~~~~~~---~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v 298 (448)
+.|.+||+-|.|||+.|.++.+++|-. ...++..+++||.....|...+.++.+|+|+||+||.+++..+.+.+..+
T Consensus 285 Nap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~c 364 (725)
T KOG0349|consen 285 NAPEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHC 364 (725)
T ss_pred CCcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeee
Confidence 458999999999999999998877754 34567778899999999999999999999999999999999999999999
Q ss_pred eEEEEcCCcccccCCCHHHHHHHHHHcCCCCC--CCcEEEEEeccCc-hHHHHHHHhhhcCcEEEEecccccccCceeEE
Q 013173 299 RYLALDEADRMLDMGFEPQIRKIVQQMDMPPP--GMRQTMLFSATFP-KEIQRLASDFLANYIFLAVGRVGSSTDLIVQR 375 (448)
Q Consensus 299 ~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~--~~~q~i~~SAT~~-~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~ 375 (448)
++||+||||.+|..++.+.|.++...+..... ...|.+++|||+. -++..+....|+=|..+.....+...+.+.+.
T Consensus 365 rFlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHhv 444 (725)
T KOG0349|consen 365 RFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHHV 444 (725)
T ss_pred EEEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhccc
Confidence 99999999999999999999998888743332 2468999999984 56777777788878777776655555544444
Q ss_pred EEEeccc------------------------------chHHHHHHHHHHHHhcCC--CCCCCcEEEEeCchhhHHHHHHH
Q 013173 376 VEFVHES------------------------------DKRSHLMDLLHAQVANGV--HGKQALTLVFVETKKGADALEHW 423 (448)
Q Consensus 376 ~~~~~~~------------------------------~k~~~L~~ll~~~~~~~~--~~~~~~tlVF~~t~~~a~~l~~~ 423 (448)
+..+... +-.+.-..+|+..+.-.. .-.-.++||||.|+..|+.|.++
T Consensus 445 v~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~ 524 (725)
T KOG0349|consen 445 VKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERM 524 (725)
T ss_pred eeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHH
Confidence 3333221 011122223322111000 01235799999999999999999
Q ss_pred HHHCC---CCeEEecCCCCHHHHHHhh
Q 013173 424 LYMNG---FPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 424 L~~~g---~~~~~iHg~~~q~eR~~~l 447 (448)
|++.| +.|.++|||+.+.||++-|
T Consensus 525 ~~qkgg~~~scvclhgDrkP~Erk~nl 551 (725)
T KOG0349|consen 525 MNQKGGKHYSCVCLHGDRKPDERKANL 551 (725)
T ss_pred HHHcCCccceeEEEecCCChhHHHHHH
Confidence 99875 7899999999999998765
No 56
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.97 E-value=2.3e-28 Score=262.76 Aligned_cols=252 Identities=17% Similarity=0.213 Sum_probs=181.2
Q ss_pred HHHHHCCCCCCCHHHHhHHhhHhCC------CCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcC
Q 013173 158 LNIRRCKYVKPTPVQRHAIPISIGG------RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAP 231 (448)
Q Consensus 158 ~~l~~~~~~~pt~~Q~~~i~~i~~g------~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~P 231 (448)
..+..++| +||++|+.+|+.+..+ .|++++++||||||++|++|++..+.. +++++||+|
T Consensus 253 ~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~-------------g~q~lilaP 318 (681)
T PRK10917 253 KFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA-------------GYQAALMAP 318 (681)
T ss_pred HHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc-------------CCeEEEEec
Confidence 33445566 6999999999999876 489999999999999999999987632 357999999
Q ss_pred cHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHH---HHHHhcC-ccEEEeChHHHHHHHhcccccCCCeeEEEEcCCc
Q 013173 232 TRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQ---LRELERG-VDILVATPGRLVDLLERARVSLQMIRYLALDEAD 307 (448)
Q Consensus 232 treL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~---~~~l~~~-~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah 307 (448)
|++||.|+++.++++....++++.+++|+.+..+. ...+..+ ++|+|+||+.+.+ .+.++++++|||||+|
T Consensus 319 T~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE~H 393 (681)
T PRK10917 319 TEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDEQH 393 (681)
T ss_pred cHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEechh
Confidence 99999999999999998889999999999986443 3444554 9999999988743 3458899999999999
Q ss_pred ccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEecccccccCceeEEEEEecccchHHH
Q 013173 308 RMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSH 387 (448)
Q Consensus 308 ~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~ 387 (448)
++.. ..+..+... ....++++||||+.+....+.. ..+.....+.........+.+.+. ...+...
T Consensus 394 rfg~-----~qr~~l~~~----~~~~~iL~~SATp~prtl~~~~--~g~~~~s~i~~~p~~r~~i~~~~~---~~~~~~~ 459 (681)
T PRK10917 394 RFGV-----EQRLALREK----GENPHVLVMTATPIPRTLAMTA--YGDLDVSVIDELPPGRKPITTVVI---PDSRRDE 459 (681)
T ss_pred hhhH-----HHHHHHHhc----CCCCCEEEEeCCCCHHHHHHHH--cCCCceEEEecCCCCCCCcEEEEe---CcccHHH
Confidence 8632 223333333 2346799999998766544433 222222222222121223433332 2333445
Q ss_pred HHHHHHHHHhcCCCCCCCcEEEEeCch--------hhHHHHHHHHHHC--CCCeEEecCCCCHHHHHHhh
Q 013173 388 LMDLLHAQVANGVHGKQALTLVFVETK--------KGADALEHWLYMN--GFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 388 L~~ll~~~~~~~~~~~~~~tlVF~~t~--------~~a~~l~~~L~~~--g~~~~~iHg~~~q~eR~~~l 447 (448)
+++.+..... ++.+++|||+++ ..++.+++.|... ++++..+||+|++.||++++
T Consensus 460 ~~~~i~~~~~-----~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~ 524 (681)
T PRK10917 460 VYERIREEIA-----KGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVM 524 (681)
T ss_pred HHHHHHHHHH-----cCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHH
Confidence 5555554432 267899999954 4567788888765 57899999999999999886
No 57
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.96 E-value=2.7e-28 Score=258.03 Aligned_cols=246 Identities=17% Similarity=0.208 Sum_probs=176.6
Q ss_pred HHHHhHHhhHhCCCCeeEEccCCCCccch---------hhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHH
Q 013173 170 PVQRHAIPISIGGRDLMACAQTGSGKTAA---------FCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIH 240 (448)
Q Consensus 170 ~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~---------~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~ 240 (448)
.+|+++++.+++++|++++|+||||||++ |++|.+..+..-. .....++++|++||||||.|+.
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~-------~~~~~~~ilvt~PrreLa~qi~ 239 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKID-------PNFIERPIVLSLPRVALVRLHS 239 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcc-------cccCCcEEEEECcHHHHHHHHH
Confidence 47999999999999999999999999997 5555555442111 0123457999999999999999
Q ss_pred HHHHHhccc---CCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcccccCCCHHH
Q 013173 241 VEAKKFSYQ---TGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQ 317 (448)
Q Consensus 241 ~~~~~~~~~---~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~ 317 (448)
..+.+.... .+..+.+.+||... .+.....+..+|+|+|++.. ...++++++|||||||+++.++ +.
T Consensus 240 ~~i~~~vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L~-------l~~L~~v~~VVIDEaHEr~~~~--Dl 309 (675)
T PHA02653 240 ITLLKSLGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKLT-------LNKLFDYGTVIIDEVHEHDQIG--DI 309 (675)
T ss_pred HHHHHHhCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCccc-------ccccccCCEEEccccccCccch--hH
Confidence 998775433 46778888999873 22233334679999997631 1257899999999999998876 44
Q ss_pred HHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEecccccccCceeEEEEEecc----------cchHHH
Q 013173 318 IRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHE----------SDKRSH 387 (448)
Q Consensus 318 i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~----------~~k~~~ 387 (448)
+..++..+ .+..+|+++||||++.+++.+ ..++.++..+.+. +.+...+.+.+..... ..+ ..
T Consensus 310 lL~llk~~---~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~--grt~~pV~~~yi~~~~~~~~~~~y~~~~k-~~ 382 (675)
T PHA02653 310 IIAVARKH---IDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIP--GGTLFPISEVYVKNKYNPKNKRAYIEEEK-KN 382 (675)
T ss_pred HHHHHHHh---hhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeC--CCcCCCeEEEEeecCcccccchhhhHHHH-HH
Confidence 55555443 133469999999999998877 5788888887764 3344566666543221 112 22
Q ss_pred HHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHC--CCCeEEecCCCCHHHH
Q 013173 388 LMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN--GFPATTIHGDRTQQRT 443 (448)
Q Consensus 388 L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~--g~~~~~iHg~~~q~eR 443 (448)
+...+..... ..++.+||||+++.+|+.+++.|... ++.+..+||+|++.++
T Consensus 383 ~l~~L~~~~~----~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~eq 436 (675)
T PHA02653 383 IVTALKKYTP----PKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNIDE 436 (675)
T ss_pred HHHHHHHhhc----ccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHHHH
Confidence 3333332211 11467999999999999999999887 7999999999998644
No 58
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.96 E-value=6.5e-28 Score=257.56 Aligned_cols=259 Identities=17% Similarity=0.213 Sum_probs=181.3
Q ss_pred HHHHHHHHHCCCCCCCHHHHhHHhhHhCC------CCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEE
Q 013173 154 EALNLNIRRCKYVKPTPVQRHAIPISIGG------RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLAL 227 (448)
Q Consensus 154 ~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g------~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~l 227 (448)
..+.+.+..++| +||++|+++|+.++.+ .+.+++++||||||++|++|++..+.. +++++
T Consensus 223 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~-------------g~qvl 288 (630)
T TIGR00643 223 ELLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA-------------GYQVA 288 (630)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc-------------CCcEE
Confidence 345566778888 7999999999999865 358999999999999999999987632 35699
Q ss_pred EEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHH---HHHHhc-CccEEEeChHHHHHHHhcccccCCCeeEEEE
Q 013173 228 ILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQ---LRELER-GVDILVATPGRLVDLLERARVSLQMIRYLAL 303 (448)
Q Consensus 228 il~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~---~~~l~~-~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVl 303 (448)
||+||++||.|+++.++++....++++.+++|+....+. ...+.. .++|+|+||+.+.+ .+.+.++.+|||
T Consensus 289 ilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVI 363 (630)
T TIGR00643 289 LMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVII 363 (630)
T ss_pred EECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEE
Confidence 999999999999999999988889999999999886653 333443 37999999998753 356789999999
Q ss_pred cCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEecccccccCceeEEEEEecccc
Q 013173 304 DEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESD 383 (448)
Q Consensus 304 DEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~~ 383 (448)
||+|++.. .+...+...... ....++++||||+.+....+.. ..+.....+.........+...+ +...
T Consensus 364 DEaH~fg~----~qr~~l~~~~~~--~~~~~~l~~SATp~prtl~l~~--~~~l~~~~i~~~p~~r~~i~~~~--~~~~- 432 (630)
T TIGR00643 364 DEQHRFGV----EQRKKLREKGQG--GFTPHVLVMSATPIPRTLALTV--YGDLDTSIIDELPPGRKPITTVL--IKHD- 432 (630)
T ss_pred echhhccH----HHHHHHHHhccc--CCCCCEEEEeCCCCcHHHHHHh--cCCcceeeeccCCCCCCceEEEE--eCcc-
Confidence 99998632 222233333210 0246799999997655433322 11111111111111112233322 2222
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCcEEEEeCch--------hhHHHHHHHHHHC--CCCeEEecCCCCHHHHHHhh
Q 013173 384 KRSHLMDLLHAQVANGVHGKQALTLVFVETK--------KGADALEHWLYMN--GFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 384 k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~--------~~a~~l~~~L~~~--g~~~~~iHg~~~q~eR~~~l 447 (448)
....+++.+..... ++.+++|||+.+ ..|+.+++.|... ++++..+||+|++.+|++++
T Consensus 433 ~~~~~~~~i~~~l~-----~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~ 501 (630)
T TIGR00643 433 EKDIVYEFIEEEIA-----KGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVM 501 (630)
T ss_pred hHHHHHHHHHHHHH-----hCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHH
Confidence 23455555554432 267799999976 4577888888753 78999999999999999876
No 59
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.96 E-value=8.9e-29 Score=253.58 Aligned_cols=254 Identities=19% Similarity=0.283 Sum_probs=191.9
Q ss_pred HCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHH
Q 013173 162 RCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHV 241 (448)
Q Consensus 162 ~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~ 241 (448)
-+||..+++-|.++|..+++++|+++..|||.||++||++|++-. . ..+|||+|..+|..++.+
T Consensus 12 ~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~---~-------------G~TLVVSPLiSLM~DQV~ 75 (590)
T COG0514 12 VFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL---E-------------GLTLVVSPLISLMKDQVD 75 (590)
T ss_pred HhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc---C-------------CCEEEECchHHHHHHHHH
Confidence 459999999999999999999999999999999999999998842 1 249999999999999999
Q ss_pred HHHHhcccCCcEEEEEECCCChHHHHH---HHhcC-ccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcccccCC--CH
Q 013173 242 EAKKFSYQTGVKVVVAYGGAPINQQLR---ELERG-VDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMG--FE 315 (448)
Q Consensus 242 ~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~~~-~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~g--f~ 315 (448)
.++.. |+.+..+.+..+..+... .+..+ .++|+-+|++|..--....+.-..+.++|||||||+++|| |+
T Consensus 76 ~l~~~----Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFR 151 (590)
T COG0514 76 QLEAA----GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFR 151 (590)
T ss_pred HHHHc----CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccC
Confidence 99984 688888888766655533 33333 7999999999965322222335668899999999999998 99
Q ss_pred HHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhc-CcEEEEecccccccCceeEEEEEecccchHHHHHHHHHH
Q 013173 316 PQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLA-NYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHA 394 (448)
Q Consensus 316 ~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~-~~~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~ 394 (448)
+.+.++.......+ +..++.||||.++.++..+...|. +...+.. .....+||...+ ++..+-...+. ++..
T Consensus 152 P~Y~~lg~l~~~~~--~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~--~sfdRpNi~~~v--~~~~~~~~q~~-fi~~ 224 (590)
T COG0514 152 PDYRRLGRLRAGLP--NPPVLALTATATPRVRDDIREQLGLQDANIFR--GSFDRPNLALKV--VEKGEPSDQLA-FLAT 224 (590)
T ss_pred HhHHHHHHHHhhCC--CCCEEEEeCCCChHHHHHHHHHhcCCCcceEE--ecCCCchhhhhh--hhcccHHHHHH-HHHh
Confidence 99999887775543 567999999999999988877765 2212222 122344443322 22111122222 3332
Q ss_pred HHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCCHHHHHHh
Q 013173 395 QVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIE 446 (448)
Q Consensus 395 ~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~ 446 (448)
.. +......||||.|++.|+.++++|...|+++..||++|+.++|+.+
T Consensus 225 ~~----~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~ 272 (590)
T COG0514 225 VL----PQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERV 272 (590)
T ss_pred hc----cccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHH
Confidence 10 1126678999999999999999999999999999999999999864
No 60
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.96 E-value=2.9e-28 Score=241.54 Aligned_cols=281 Identities=21% Similarity=0.255 Sum_probs=222.3
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCCHHHHhHHhh-HhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCc
Q 013173 146 TFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPI-SIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYP 224 (448)
Q Consensus 146 ~f~~l~L~~~l~~~l~~~~~~~pt~~Q~~~i~~-i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~ 224 (448)
..+++++++.+.+.++..|++.+.|+|.-++.. ++.|.|++|+++|+||||++.-+.=+..++..+ .
T Consensus 195 ~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g------------~ 262 (830)
T COG1202 195 PVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGG------------K 262 (830)
T ss_pred cccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhCC------------C
Confidence 467899999999999999999999999999986 569999999999999999999998888887643 3
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHH----HHhcCccEEEeChHHHHHHHhcccccCCCeeE
Q 013173 225 LALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLR----ELERGVDILVATPGRLVDLLERARVSLQMIRY 300 (448)
Q Consensus 225 ~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~----~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~ 300 (448)
+.|+|+|..+||+|-++.++.-....++++.+-.|-..+..... .-....||||+|.+.+-.+|..+ .++.+|..
T Consensus 263 KmlfLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGt 341 (830)
T COG1202 263 KMLFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGT 341 (830)
T ss_pred eEEEEehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-Ccccccce
Confidence 58999999999999999998766777888877777655443321 11123699999999998888877 46999999
Q ss_pred EEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEecccccccCceeEEEEEec
Q 013173 301 LALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVH 380 (448)
Q Consensus 301 lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~ 380 (448)
||+||+|.+-+....+-+.-++..+.... +..|.|.+|||..+. +.+++.+-.+.+...- -+-.+..++.++.
T Consensus 342 VVIDEiHtL~deERG~RLdGLI~RLr~l~-~~AQ~i~LSATVgNp-~elA~~l~a~lV~y~~-----RPVplErHlvf~~ 414 (830)
T COG1202 342 VVIDEIHTLEDEERGPRLDGLIGRLRYLF-PGAQFIYLSATVGNP-EELAKKLGAKLVLYDE-----RPVPLERHLVFAR 414 (830)
T ss_pred EEeeeeeeccchhcccchhhHHHHHHHhC-CCCeEEEEEeecCCh-HHHHHHhCCeeEeecC-----CCCChhHeeeeec
Confidence 99999999877665666666666664443 468999999998544 5667666555554432 2223333555565
Q ss_pred -ccchHHHHHHHHHHHH-hcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCCHHHHHHh
Q 013173 381 -ESDKRSHLMDLLHAQV-ANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIE 446 (448)
Q Consensus 381 -~~~k~~~L~~ll~~~~-~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~ 446 (448)
+.+|...+..+.+... ..+..+..++||||++|++.|..|+++|...|+++..||++|++.+|+.+
T Consensus 415 ~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~v 482 (830)
T COG1202 415 NESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSV 482 (830)
T ss_pred CchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHH
Confidence 6788888888877543 33445667899999999999999999999999999999999999999865
No 61
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.96 E-value=4.1e-28 Score=216.80 Aligned_cols=168 Identities=33% Similarity=0.564 Sum_probs=145.2
Q ss_pred CHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcc
Q 013173 169 TPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSY 248 (448)
Q Consensus 169 t~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~ 248 (448)
||+|.++++.+.+++|+++++|||+|||++|++|+++.+.+.. ..++||++|+++|+.|+++.+.++..
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~-----------~~~~lii~P~~~l~~q~~~~~~~~~~ 69 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGK-----------DARVLIIVPTRALAEQQFERLRKFFS 69 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTS-----------SSEEEEEESSHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCC-----------CceEEEEeeccccccccccccccccc
Confidence 7999999999999999999999999999999999998886541 13699999999999999999999988
Q ss_pred cCCcEEEEEECCCChH-HHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcccccCCCHHHHHHHHHHcCC
Q 013173 249 QTGVKVVVAYGGAPIN-QQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDM 327 (448)
Q Consensus 249 ~~~~~~~~~~gg~~~~-~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~ 327 (448)
..++++..++++.... .....+..+++|+|+||++|.+++.....++.++++|||||+|.+..+.+...+..|+..+..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~ 149 (169)
T PF00270_consen 70 NTNVRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKR 149 (169)
T ss_dssp TTTSSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHT
T ss_pred ccccccccccccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcC
Confidence 7888999999998866 444455567999999999999999986667778999999999999998888899999988743
Q ss_pred CCCCCcEEEEEeccCchHHHHH
Q 013173 328 PPPGMRQTMLFSATFPKEIQRL 349 (448)
Q Consensus 328 ~~~~~~q~i~~SAT~~~~v~~l 349 (448)
.. ..|++++|||++..++.+
T Consensus 150 ~~--~~~~i~~SAT~~~~~~~~ 169 (169)
T PF00270_consen 150 FK--NIQIILLSATLPSNVEKL 169 (169)
T ss_dssp TT--TSEEEEEESSSTHHHHHH
T ss_pred CC--CCcEEEEeeCCChhHhhC
Confidence 32 478999999999877754
No 62
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.95 E-value=6.6e-27 Score=252.98 Aligned_cols=240 Identities=15% Similarity=0.159 Sum_probs=172.8
Q ss_pred hHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHH-HhcccCCc
Q 013173 174 HAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAK-KFSYQTGV 252 (448)
Q Consensus 174 ~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~-~~~~~~~~ 252 (448)
+.+..+.++++++++|+||||||++|.+++++... ..+++||++|||++|.|+++.+. .+....+.
T Consensus 9 ~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~-------------~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~ 75 (819)
T TIGR01970 9 ALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG-------------IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQ 75 (819)
T ss_pred HHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc-------------cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCc
Confidence 44556667899999999999999999999997641 12469999999999999999885 44455566
Q ss_pred EEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCc-ccccCCCHHHH-HHHHHHcCCCCC
Q 013173 253 KVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEAD-RMLDMGFEPQI-RKIVQQMDMPPP 330 (448)
Q Consensus 253 ~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah-~ll~~gf~~~i-~~i~~~l~~~~~ 330 (448)
.+...+.+.. ......+|+|+|||+|++++... ..++++++|||||+| ++++.+|.-.+ ..+...+ +
T Consensus 76 ~VGy~vr~~~------~~s~~t~I~v~T~G~Llr~l~~d-~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~l----r 144 (819)
T TIGR01970 76 TVGYRVRGEN------KVSRRTRLEVVTEGILTRMIQDD-PELDGVGALIFDEFHERSLDADLGLALALDVQSSL----R 144 (819)
T ss_pred EEEEEEcccc------ccCCCCcEEEECCcHHHHHHhhC-cccccCCEEEEeccchhhhccchHHHHHHHHHHhc----C
Confidence 6665555433 23345799999999999999864 479999999999999 57777664433 4455555 5
Q ss_pred CCcEEEEEeccCchHHHHHHHhhhcCcEEEEecccccccCceeEEEEEecccchHH-HHHHHHHHHHhcCCCCCCCcEEE
Q 013173 331 GMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRS-HLMDLLHAQVANGVHGKQALTLV 409 (448)
Q Consensus 331 ~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~~k~~-~L~~ll~~~~~~~~~~~~~~tlV 409 (448)
.+.|+|+||||++.+. +..|+.+...+.+.. ....+.++|..+...++.. .+...+...... ..+.+||
T Consensus 145 ~dlqlIlmSATl~~~~---l~~~l~~~~vI~~~g---r~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~----~~g~iLV 214 (819)
T TIGR01970 145 EDLKILAMSATLDGER---LSSLLPDAPVVESEG---RSFPVEIRYLPLRGDQRLEDAVSRAVEHALAS----ETGSILV 214 (819)
T ss_pred CCceEEEEeCCCCHHH---HHHHcCCCcEEEecC---cceeeeeEEeecchhhhHHHHHHHHHHHHHHh----cCCcEEE
Confidence 6789999999999764 346666544443321 1223555555444433322 122222221111 1567999
Q ss_pred EeCchhhHHHHHHHHHH---CCCCeEEecCCCCHHHHHHhh
Q 013173 410 FVETKKGADALEHWLYM---NGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 410 F~~t~~~a~~l~~~L~~---~g~~~~~iHg~~~q~eR~~~l 447 (448)
||+++.+++.+++.|.. .++.+..+||+|++.+|.+++
T Consensus 215 Flpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~ 255 (819)
T TIGR01970 215 FLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAI 255 (819)
T ss_pred EECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHH
Confidence 99999999999999987 479999999999999999886
No 63
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.95 E-value=1e-26 Score=252.06 Aligned_cols=240 Identities=13% Similarity=0.157 Sum_probs=172.6
Q ss_pred hHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH-hcccCCc
Q 013173 174 HAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK-FSYQTGV 252 (448)
Q Consensus 174 ~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~-~~~~~~~ 252 (448)
+.+..+.++++++++|+||||||++|.+++|+... ..+++||++|||++|.|+++.+.+ +....+.
T Consensus 12 ~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~-------------~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~ 78 (812)
T PRK11664 12 ELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGG-------------INGKIIMLEPRRLAARNVAQRLAEQLGEKPGE 78 (812)
T ss_pred HHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCC-------------cCCeEEEECChHHHHHHHHHHHHHHhCcccCc
Confidence 34455667899999999999999999999886431 123699999999999999998854 4555677
Q ss_pred EEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcc-cccCCCH-HHHHHHHHHcCCCCC
Q 013173 253 KVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADR-MLDMGFE-PQIRKIVQQMDMPPP 330 (448)
Q Consensus 253 ~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~-ll~~gf~-~~i~~i~~~l~~~~~ 330 (448)
.+...+++.... ....+|+|+|||+|++++... ..++++++|||||+|. .++.++. ..+..++..+ +
T Consensus 79 ~VGy~vr~~~~~------~~~t~I~v~T~G~Llr~l~~d-~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~l----r 147 (812)
T PRK11664 79 TVGYRMRAESKV------GPNTRLEVVTEGILTRMIQRD-PELSGVGLVILDEFHERSLQADLALALLLDVQQGL----R 147 (812)
T ss_pred eEEEEecCcccc------CCCCcEEEEChhHHHHHHhhC-CCcCcCcEEEEcCCCccccccchHHHHHHHHHHhC----C
Confidence 777777665421 234689999999999998864 4799999999999996 4554432 2234455555 5
Q ss_pred CCcEEEEEeccCchHHHHHHHhhhcCcEEEEecccccccCceeEEEEEecccchHH-HHHHHHHHHHhcCCCCCCCcEEE
Q 013173 331 GMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRS-HLMDLLHAQVANGVHGKQALTLV 409 (448)
Q Consensus 331 ~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~~k~~-~L~~ll~~~~~~~~~~~~~~tlV 409 (448)
.+.|+|+||||++.+. +..|+.+...+.+. +. ...+.++|..+...++.. .+...+...... ..+.+||
T Consensus 148 ~~lqlilmSATl~~~~---l~~~~~~~~~I~~~--gr-~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~----~~g~iLV 217 (812)
T PRK11664 148 DDLKLLIMSATLDNDR---LQQLLPDAPVIVSE--GR-SFPVERRYQPLPAHQRFDEAVARATAELLRQ----ESGSLLL 217 (812)
T ss_pred ccceEEEEecCCCHHH---HHHhcCCCCEEEec--Cc-cccceEEeccCchhhhHHHHHHHHHHHHHHh----CCCCEEE
Confidence 6789999999998752 34666655444332 11 223566665555444443 222222222111 1567999
Q ss_pred EeCchhhHHHHHHHHHH---CCCCeEEecCCCCHHHHHHhh
Q 013173 410 FVETKKGADALEHWLYM---NGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 410 F~~t~~~a~~l~~~L~~---~g~~~~~iHg~~~q~eR~~~l 447 (448)
||+++++++.+++.|.. .++.+..+||+|++.+|++++
T Consensus 218 Flpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~ 258 (812)
T PRK11664 218 FLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAI 258 (812)
T ss_pred EcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHh
Confidence 99999999999999987 578999999999999998876
No 64
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.95 E-value=3.6e-26 Score=228.37 Aligned_cols=256 Identities=16% Similarity=0.086 Sum_probs=170.0
Q ss_pred HHHhHHhhHhCCCC--eeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcc
Q 013173 171 VQRHAIPISIGGRD--LMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSY 248 (448)
Q Consensus 171 ~Q~~~i~~i~~g~d--~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~ 248 (448)
.|.++++.+.++.+ ++++||||||||++|++|++.. ..++|+++|+++|+.|+++.++.+..
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~----------------~~~~~~~~P~~aL~~~~~~~~~~~~~ 64 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG----------------ENDTIALYPTNALIEDQTEAIKEFVD 64 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc----------------CCCEEEEeChHHHHHHHHHHHHHHHH
Confidence 48999999998874 7899999999999999998841 12489999999999999999998763
Q ss_pred c----CCcEEEEEECCCChH--HHH----------------H--HHhcCccEEEeChHHHHHHHhccc--------ccCC
Q 013173 249 Q----TGVKVVVAYGGAPIN--QQL----------------R--ELERGVDILVATPGRLVDLLERAR--------VSLQ 296 (448)
Q Consensus 249 ~----~~~~~~~~~gg~~~~--~~~----------------~--~l~~~~~Ilv~Tp~~l~~~l~~~~--------~~l~ 296 (448)
. .++.+..+.|.+... ... + .....++|+++||+.|..++.... ..+.
T Consensus 65 ~~~~~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~ 144 (357)
T TIGR03158 65 VFKPERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYT 144 (357)
T ss_pred hcCCCCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhc
Confidence 2 245566555542211 000 0 112357899999999987664321 1257
Q ss_pred CeeEEEEcCCcccccCCC--HH---HHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhh--hcCcEEEEeccc----
Q 013173 297 MIRYLALDEADRMLDMGF--EP---QIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDF--LANYIFLAVGRV---- 365 (448)
Q Consensus 297 ~v~~lVlDEah~ll~~gf--~~---~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~--l~~~~~i~v~~~---- 365 (448)
++++|||||+|.+..+.. .. .+..++... ....+++++|||+++.+...+... +..++....+..
T Consensus 145 ~~~~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~ 220 (357)
T TIGR03158 145 KFSTVIFDEFHLYDAKQLVGMLFLLAYMQLIRFF----ECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFP 220 (357)
T ss_pred CCCEEEEecccccCcccchhhhhhhHHHHHHHhh----hcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccC
Confidence 899999999999864331 11 222333322 223589999999999988877765 444443322220
Q ss_pred -------cc-------ccCceeEEEEEecccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCC--C
Q 013173 366 -------GS-------STDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNG--F 429 (448)
Q Consensus 366 -------~~-------~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g--~ 429 (448)
.. ..+.+.+.+.. ....|...+..++...........+.++||||+|++.|+.+++.|+..+ +
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~ 299 (357)
T TIGR03158 221 DNPELEADNKTQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGD 299 (357)
T ss_pred CChhhhccccccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCc
Confidence 00 01245554443 3344444444443332111000125689999999999999999999864 6
Q ss_pred CeEEecCCCCHHHHHHhh
Q 013173 430 PATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 430 ~~~~iHg~~~q~eR~~~l 447 (448)
.+..+||.+++.+|++++
T Consensus 300 ~~~~l~g~~~~~~R~~~~ 317 (357)
T TIGR03158 300 DIGRITGFAPKKDRERAM 317 (357)
T ss_pred eEEeeecCCCHHHHHHhc
Confidence 789999999999998753
No 65
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.95 E-value=1e-26 Score=242.47 Aligned_cols=248 Identities=13% Similarity=0.106 Sum_probs=168.1
Q ss_pred CCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q 013173 165 YVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAK 244 (448)
Q Consensus 165 ~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~ 244 (448)
...|+++|+++++.++.+++.++++|||+|||+++... ...+.... ..++|||+||++|+.|+.+.++
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l-~~~~~~~~-----------~~~vLilvpt~eL~~Q~~~~l~ 179 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLL-SRYYLENY-----------EGKVLIIVPTTSLVTQMIDDFV 179 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHH-HHHHHhcC-----------CCeEEEEECcHHHHHHHHHHHH
Confidence 45899999999999999999999999999999976432 22222211 2369999999999999999999
Q ss_pred HhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcccccCCCHHHHHHHHHH
Q 013173 245 KFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQ 324 (448)
Q Consensus 245 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~ 324 (448)
+|.......+..+++|.... ...+|+|+||++|.+... ..++++++||+||||++.. ..+..++..
T Consensus 180 ~~~~~~~~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~---~~~~~~~~iIvDEaH~~~~----~~~~~il~~ 245 (501)
T PHA02558 180 DYRLFPREAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK---EWFDQFGMVIVDECHLFTG----KSLTSIITK 245 (501)
T ss_pred HhccccccceeEEecCcccC-------CCCCEEEeeHHHHhhchh---hhccccCEEEEEchhcccc----hhHHHHHHh
Confidence 98755455565667765432 347999999999976542 2468899999999999976 456677777
Q ss_pred cCCCCCCCcEEEEEeccCchHHHHHHHh-hhcCcEEEEecccc------------------ccc---Cce-----eEEEE
Q 013173 325 MDMPPPGMRQTMLFSATFPKEIQRLASD-FLANYIFLAVGRVG------------------SST---DLI-----VQRVE 377 (448)
Q Consensus 325 l~~~~~~~~q~i~~SAT~~~~v~~l~~~-~l~~~~~i~v~~~~------------------~~~---~~i-----~q~~~ 377 (448)
+ ++.+++++||||+.......... .+-.++...+.... .+. ..+ .+.+.
T Consensus 246 ~----~~~~~~lGLTATp~~~~~~~~~~~~~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 321 (501)
T PHA02558 246 L----DNCKFKFGLTGSLRDGKANILQYVGLFGDIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIK 321 (501)
T ss_pred h----hccceEEEEeccCCCccccHHHHHHhhCCceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHH
Confidence 6 55678999999996543211110 01111211111000 000 000 00000
Q ss_pred -EecccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCCHHHHHHhh
Q 013173 378 -FVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 378 -~~~~~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
.+....+...+.+++..... .+.++||||+++++|+.|++.|...++++..+||++++.+|++++
T Consensus 322 ~l~~~~~Rn~~I~~~~~~~~~-----~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~ 387 (501)
T PHA02558 322 YITSHTKRNKWIANLALKLAK-----KGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMK 387 (501)
T ss_pred HHhccHHHHHHHHHHHHHHHh-----cCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHH
Confidence 11122233334444433321 256799999999999999999999999999999999999998754
No 66
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.95 E-value=7.3e-27 Score=234.37 Aligned_cols=238 Identities=18% Similarity=0.105 Sum_probs=160.5
Q ss_pred CeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCh
Q 013173 184 DLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPI 263 (448)
Q Consensus 184 d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~ 263 (448)
|++++||||||||++|++|++..+... ...++||++|+++|+.|+++.++.+... ++..++++...
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~-----------~~~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~ 66 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQ-----------KADRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSF 66 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhC-----------CCCeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHH
Confidence 689999999999999999999875432 2346999999999999999999987432 33444444321
Q ss_pred HH------------HHHHHh------cCccEEEeChHHHHHHHhccc----ccCC--CeeEEEEcCCcccccCCCHHHHH
Q 013173 264 NQ------------QLRELE------RGVDILVATPGRLVDLLERAR----VSLQ--MIRYLALDEADRMLDMGFEPQIR 319 (448)
Q Consensus 264 ~~------------~~~~l~------~~~~Ilv~Tp~~l~~~l~~~~----~~l~--~v~~lVlDEah~ll~~gf~~~i~ 319 (448)
.. ...... ...+|+|+||++++..+.... ..+. ..++|||||||+++++++.. +.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~ 145 (358)
T TIGR01587 67 KRIKEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-IL 145 (358)
T ss_pred HHHhccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HH
Confidence 10 000111 125799999999988776521 1112 23789999999999876544 66
Q ss_pred HHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEecccccccCceeEEEEEec--ccchHHHHHHHHHHHHh
Q 013173 320 KIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVH--ESDKRSHLMDLLHAQVA 397 (448)
Q Consensus 320 ~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~--~~~k~~~L~~ll~~~~~ 397 (448)
.++..+. ....|+++||||+|+.+.+++..+............ .......+.+..+. ...+...+.+++....
T Consensus 146 ~~l~~l~---~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~- 220 (358)
T TIGR01587 146 AVLEVLK---DNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLK-EERRFERHRFIKIESDKVGEISSLERLLEFIK- 220 (358)
T ss_pred HHHHHHH---HcCCCEEEEecCchHHHHHHHhcCCCcccccCCCCc-cccccccccceeeccccccCHHHHHHHHHHhh-
Confidence 6666663 345789999999998888777665433211111100 00001123332222 2345666666665432
Q ss_pred cCCCCCCCcEEEEeCchhhHHHHHHHHHHCCC--CeEEecCCCCHHHHHHh
Q 013173 398 NGVHGKQALTLVFVETKKGADALEHWLYMNGF--PATTIHGDRTQQRTSIE 446 (448)
Q Consensus 398 ~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~--~~~~iHg~~~q~eR~~~ 446 (448)
.+.++||||+|+++|+.+++.|.+.+. .+..+||++++.+|+++
T Consensus 221 -----~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~ 266 (358)
T TIGR01587 221 -----KGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKK 266 (358)
T ss_pred -----CCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHH
Confidence 267899999999999999999988776 49999999999999764
No 67
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.95 E-value=3.7e-26 Score=248.10 Aligned_cols=276 Identities=22% Similarity=0.253 Sum_probs=204.1
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcC
Q 013173 152 LGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAP 231 (448)
Q Consensus 152 L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~P 231 (448)
....+..++.+.++..+.++|.+|+..+.+|+|+||+.+||||||.+|++|||+.+++.... ++|+|.|
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a-----------~AL~lYP 123 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSA-----------RALLLYP 123 (851)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCc-----------cEEEEec
Confidence 44556888888899999999999999999999999999999999999999999999876532 5999999
Q ss_pred cHHHHHHHHHHHHHhcccCC--cEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcc----cccCCCeeEEEEcC
Q 013173 232 TRELSSQIHVEAKKFSYQTG--VKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA----RVSLQMIRYLALDE 305 (448)
Q Consensus 232 treL~~qi~~~~~~~~~~~~--~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~----~~~l~~v~~lVlDE 305 (448)
|++|++++.+.++++....+ +.+....|.+...+........++||++||.+|..++... ...+++++||||||
T Consensus 124 tnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDE 203 (851)
T COG1205 124 TNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDE 203 (851)
T ss_pred hhhhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEec
Confidence 99999999999999987666 7777877777766665677788999999999998855432 24578899999999
Q ss_pred CcccccCCCHHHHHHHHH----HcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEecccccccCceeEEEEEec-
Q 013173 306 ADRMLDMGFEPQIRKIVQ----QMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVH- 380 (448)
Q Consensus 306 ah~ll~~gf~~~i~~i~~----~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~- 380 (448)
+|..-. -|..++..++. .+... ....|+|+.|||+... .+++.++........+............ +...+
T Consensus 204 lHtYrG-v~GS~vA~llRRL~~~~~~~-~~~~q~i~~SAT~~np-~e~~~~l~~~~f~~~v~~~g~~~~~~~~-~~~~p~ 279 (851)
T COG1205 204 LHTYRG-VQGSEVALLLRRLLRRLRRY-GSPLQIICTSATLANP-GEFAEELFGRDFEVPVDEDGSPRGLRYF-VRREPP 279 (851)
T ss_pred ceeccc-cchhHHHHHHHHHHHHHhcc-CCCceEEEEeccccCh-HHHHHHhcCCcceeeccCCCCCCCceEE-EEeCCc
Confidence 997632 24555444444 44333 3568999999999655 4555566555544434433333333322 22222
Q ss_pred --------ccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHH----HHHHHCC----CCeEEecCCCCHHHHH
Q 013173 381 --------ESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALE----HWLYMNG----FPATTIHGDRTQQRTS 444 (448)
Q Consensus 381 --------~~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~----~~L~~~g----~~~~~iHg~~~q~eR~ 444 (448)
...+...+..+......+ +-++|+||.+++.|+.+. ..+...+ ..+..+|+++...+|.
T Consensus 280 ~~~~~~~~r~s~~~~~~~~~~~~~~~-----~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~ 354 (851)
T COG1205 280 IRELAESIRRSALAELATLAALLVRN-----GIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERR 354 (851)
T ss_pred chhhhhhcccchHHHHHHHHHHHHHc-----CceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHH
Confidence 123444444444444332 778999999999999997 4444445 6789999999999998
Q ss_pred Hhh
Q 013173 445 IEI 447 (448)
Q Consensus 445 ~~l 447 (448)
++.
T Consensus 355 ~ie 357 (851)
T COG1205 355 RIE 357 (851)
T ss_pred HHH
Confidence 653
No 68
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=3.2e-25 Score=231.63 Aligned_cols=256 Identities=18% Similarity=0.171 Sum_probs=192.4
Q ss_pred CCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013173 166 VKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK 245 (448)
Q Consensus 166 ~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~ 245 (448)
..|+++|..++|.++.|+ |+.++||+|||++|.+|++...+. ++.++||+||++||.|.++.+..
T Consensus 102 ~~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~-------------G~~v~VvTptreLA~qdae~~~~ 166 (656)
T PRK12898 102 QRHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALA-------------GLPVHVITVNDYLAERDAELMRP 166 (656)
T ss_pred CCCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhc-------------CCeEEEEcCcHHHHHHHHHHHHH
Confidence 479999999999999999 999999999999999999976532 35699999999999999999999
Q ss_pred hcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHH-HHHHhccc-------------------------ccCCCee
Q 013173 246 FSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRL-VDLLERAR-------------------------VSLQMIR 299 (448)
Q Consensus 246 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l-~~~l~~~~-------------------------~~l~~v~ 299 (448)
+....++++.+++||.+. +.+....++||+|+|..-| .|+|.... .....+.
T Consensus 167 l~~~lGlsv~~i~gg~~~--~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~ 244 (656)
T PRK12898 167 LYEALGLTVGCVVEDQSP--DERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLH 244 (656)
T ss_pred HHhhcCCEEEEEeCCCCH--HHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccc
Confidence 999999999999999864 4556667899999999988 55554321 1135678
Q ss_pred EEEEcCCcccc-cCC-----------------CHHHHHHHHHHcCCC-----------------------------C---
Q 013173 300 YLALDEADRML-DMG-----------------FEPQIRKIVQQMDMP-----------------------------P--- 329 (448)
Q Consensus 300 ~lVlDEah~ll-~~g-----------------f~~~i~~i~~~l~~~-----------------------------~--- 329 (448)
|.||||+|-+| |.. +...+..++..+... +
T Consensus 245 ~aIvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~ 324 (656)
T PRK12898 245 FAIVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAW 324 (656)
T ss_pred eeEeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhc
Confidence 99999999764 110 111111111111000 0
Q ss_pred -----------------------------------------------------------------CCC------------
Q 013173 330 -----------------------------------------------------------------PGM------------ 332 (448)
Q Consensus 330 -----------------------------------------------------------------~~~------------ 332 (448)
...
T Consensus 325 ~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~ 404 (656)
T PRK12898 325 RGAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRF 404 (656)
T ss_pred ccchHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHH
Confidence 000
Q ss_pred ----cEEEEEeccCchHHHHHHHhhhcCcEEEEecccccccCceeEEEEEecccchHHHHHHHHHHHHhcCCCCCCCcEE
Q 013173 333 ----RQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTL 408 (448)
Q Consensus 333 ----~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~tl 408 (448)
..+.+||||++.+..++...|..+++.+-..... .....+.++++...+|...|.+++..... .+.++|
T Consensus 405 Fr~Y~kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~--~r~~~~~~v~~t~~~K~~aL~~~i~~~~~-----~~~pvL 477 (656)
T PRK12898 405 FRRYLRLAGMTGTAREVAGELWSVYGLPVVRIPTNRPS--QRRHLPDEVFLTAAAKWAAVAARVRELHA-----QGRPVL 477 (656)
T ss_pred HHhhHHHhcccCcChHHHHHHHHHHCCCeEEeCCCCCc--cceecCCEEEeCHHHHHHHHHHHHHHHHh-----cCCCEE
Confidence 2467899999988888888887777666544332 22234455667778899999998876432 256799
Q ss_pred EEeCchhhHHHHHHHHHHCCCCeEEecCCCCHHHHHH
Q 013173 409 VFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSI 445 (448)
Q Consensus 409 VF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~ 445 (448)
|||+|++.++.|++.|...|+++..|||++.+.|+..
T Consensus 478 Ift~t~~~se~L~~~L~~~gi~~~~Lhg~~~~rE~~i 514 (656)
T PRK12898 478 VGTRSVAASERLSALLREAGLPHQVLNAKQDAEEAAI 514 (656)
T ss_pred EEeCcHHHHHHHHHHHHHCCCCEEEeeCCcHHHHHHH
Confidence 9999999999999999999999999999977666653
No 69
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.93 E-value=4.7e-25 Score=236.47 Aligned_cols=253 Identities=19% Similarity=0.220 Sum_probs=186.2
Q ss_pred CCCCHHHHHHHHHCCCCCCCHHHHhHHhh-HhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEE
Q 013173 150 IDLGEALNLNIRRCKYVKPTPVQRHAIPI-SIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALI 228 (448)
Q Consensus 150 l~L~~~l~~~l~~~~~~~pt~~Q~~~i~~-i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~li 228 (448)
..+.+.+.+.++..++....+-|+.++.. +..++|+++|+|||||||+.+++.|++.+.+. +.++|+
T Consensus 14 ~~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~------------~~k~vY 81 (766)
T COG1204 14 VKLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG------------GGKVVY 81 (766)
T ss_pred ccccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc------------CCcEEE
Confidence 34778888888888887877777777754 45679999999999999999999999998764 235999
Q ss_pred EcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcc
Q 013173 229 LAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADR 308 (448)
Q Consensus 229 l~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ 308 (448)
|||+++||.++++++++| ...|++|...+|+...... ...+++|+|+||+++..++++....+..|++|||||+|.
T Consensus 82 ivPlkALa~Ek~~~~~~~-~~~GirV~~~TgD~~~~~~---~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~ 157 (766)
T COG1204 82 IVPLKALAEEKYEEFSRL-EELGIRVGISTGDYDLDDE---RLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHL 157 (766)
T ss_pred EeChHHHHHHHHHHhhhH-HhcCCEEEEecCCcccchh---hhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeee
Confidence 999999999999999944 3469999999999875442 223589999999999999988777789999999999999
Q ss_pred cccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEeccccc-ccCceeEEEEEecccc----
Q 013173 309 MLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGS-STDLIVQRVEFVHESD---- 383 (448)
Q Consensus 309 ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~-~~~~i~q~~~~~~~~~---- 383 (448)
+.+....+.++.|+..+... ....|++.+|||+|+- .+++...-.+++......... ......+.+.......
T Consensus 158 l~d~~RG~~lE~iv~r~~~~-~~~~rivgLSATlpN~-~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~ 235 (766)
T COG1204 158 LGDRTRGPVLESIVARMRRL-NELIRIVGLSATLPNA-EEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWP 235 (766)
T ss_pred cCCcccCceehhHHHHHHhh-CcceEEEEEeeecCCH-HHHHHHhCCcccccCCCCcccccCCccceEEEEecCcccccc
Confidence 98876677777887777433 2337999999999864 444443333443211111111 1122233444443222
Q ss_pred --hHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHH
Q 013173 384 --KRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLY 425 (448)
Q Consensus 384 --k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~ 425 (448)
+....++++..... +++++||||+|++.|...|..|.
T Consensus 236 ~~~~~~~~~~v~~~~~-----~~~qvLvFv~sR~~a~~~A~~l~ 274 (766)
T COG1204 236 LLIDNLALELVLESLA-----EGGQVLVFVHSRKEAEKTAKKLR 274 (766)
T ss_pred ccchHHHHHHHHHHHh-----cCCeEEEEEecCchHHHHHHHHH
Confidence 23444444444332 27889999999999999999998
No 70
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.93 E-value=1.2e-24 Score=228.53 Aligned_cols=262 Identities=19% Similarity=0.218 Sum_probs=183.3
Q ss_pred HCCCCCCCHHHHhHHhhHh-CCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHH
Q 013173 162 RCKYVKPTPVQRHAIPISI-GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIH 240 (448)
Q Consensus 162 ~~~~~~pt~~Q~~~i~~i~-~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~ 240 (448)
-++|.+++.+|..++|.+. .+.|++||||||||||..|+|.||+.+.+... .........++|+|+|+++||..++
T Consensus 105 ~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~---~~~i~k~~fKiVYIaPmKALa~Em~ 181 (1230)
T KOG0952|consen 105 FFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEE---QGDIAKDDFKIVYIAPMKALAAEMV 181 (1230)
T ss_pred cccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhcc---ccccccCCceEEEEechHHHHHHHH
Confidence 4578889999999999987 57899999999999999999999998875221 1123345678999999999999999
Q ss_pred HHHHHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhccc---ccCCCeeEEEEcCCcccccCCCHHH
Q 013173 241 VEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERAR---VSLQMIRYLALDEADRMLDMGFEPQ 317 (448)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~---~~l~~v~~lVlDEah~ll~~gf~~~ 317 (448)
+.+.+-...++++|..++|++...... + ..++|||+||+++--.-++.. ..++.|++|||||+|.|-+ ...+.
T Consensus 182 ~~~~kkl~~~gi~v~ELTGD~ql~~te--i-~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd-~RGpv 257 (1230)
T KOG0952|consen 182 DKFSKKLAPLGISVRELTGDTQLTKTE--I-ADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHD-DRGPV 257 (1230)
T ss_pred HHHhhhcccccceEEEecCcchhhHHH--H-HhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcC-cccch
Confidence 999887777899999999998765543 2 248999999999843333221 2368899999999997654 45677
Q ss_pred HHHHHHHcC---CCCCCCcEEEEEeccCchHHHHHHHhhhc-C-cEEEEecccccccCceeEEEEEeccc---chHH---
Q 013173 318 IRKIVQQMD---MPPPGMRQTMLFSATFPKEIQRLASDFLA-N-YIFLAVGRVGSSTDLIVQRVEFVHES---DKRS--- 386 (448)
Q Consensus 318 i~~i~~~l~---~~~~~~~q~i~~SAT~~~~v~~l~~~~l~-~-~~~i~v~~~~~~~~~i~q~~~~~~~~---~k~~--- 386 (448)
++.|+.+.. ......++++++|||+|+- .+++. ||+ + +..++.....--+-.+.|.++-.+.. .+..
T Consensus 258 lEtiVaRtlr~vessqs~IRivgLSATlPN~-eDvA~-fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d 335 (1230)
T KOG0952|consen 258 LETIVARTLRLVESSQSMIRIVGLSATLPNY-EDVAR-FLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNID 335 (1230)
T ss_pred HHHHHHHHHHHHHhhhhheEEEEeeccCCCH-HHHHH-HhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHH
Confidence 777776553 1123467899999999964 44444 444 3 34444433334445566666655443 1111
Q ss_pred -HHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHC----CCCeEEecCC
Q 013173 387 -HLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN----GFPATTIHGD 437 (448)
Q Consensus 387 -~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~----g~~~~~iHg~ 437 (448)
...+-+.+.. ..+.+++|||.++..+...|+.|.+. |....++|+.
T Consensus 336 ~~~~~kv~e~~-----~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~ 386 (1230)
T KOG0952|consen 336 EVCYDKVVEFL-----QEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSP 386 (1230)
T ss_pred HHHHHHHHHHH-----HcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCCh
Confidence 1111111111 12788999999999999999988653 4455555555
No 71
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.93 E-value=1.5e-24 Score=234.30 Aligned_cols=262 Identities=18% Similarity=0.233 Sum_probs=196.3
Q ss_pred HHHHHHHHHCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcH
Q 013173 154 EALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTR 233 (448)
Q Consensus 154 ~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr 233 (448)
+.+......+|+..++|-|.++|..++.|+|++|..|||.||++||+||++- ..+.+|||+|..
T Consensus 251 ~~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l----------------~~gitvVISPL~ 314 (941)
T KOG0351|consen 251 ELELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALL----------------LGGVTVVISPLI 314 (941)
T ss_pred HHHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeeccccc----------------cCCceEEeccHH
Confidence 4455555678999999999999999999999999999999999999999872 123699999999
Q ss_pred HHHHHHHHHHHHhcccCCcEEEEEECCCChHHHH---HHHhcC---ccEEEeChHHHHHHH--hcccccCCC---eeEEE
Q 013173 234 ELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQL---RELERG---VDILVATPGRLVDLL--ERARVSLQM---IRYLA 302 (448)
Q Consensus 234 eL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~---~~l~~~---~~Ilv~Tp~~l~~~l--~~~~~~l~~---v~~lV 302 (448)
.|++.+...+.+ .++....+.++....++. ..+..+ ++|++.||+++...- .....++.. +.++|
T Consensus 315 SLm~DQv~~L~~----~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~v 390 (941)
T KOG0351|consen 315 SLMQDQVTHLSK----KGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFV 390 (941)
T ss_pred HHHHHHHHhhhh----cCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEE
Confidence 999988887744 478888888888775443 333333 799999999986432 212223444 89999
Q ss_pred EcCCcccccCC--CHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhc--CcEEEEecccccccCceeEEEEE
Q 013173 303 LDEADRMLDMG--FEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLA--NYIFLAVGRVGSSTDLIVQRVEF 378 (448)
Q Consensus 303 lDEah~ll~~g--f~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~--~~~~i~v~~~~~~~~~i~q~~~~ 378 (448)
+||||+..+|| |++.++++.......+. +.+|.+|||.+..|+.-+-..|. ++..+ ......+|+. |.+
T Consensus 391 IDEAHCVSqWgHdFRp~Yk~l~~l~~~~~~--vP~iALTATAT~~v~~DIi~~L~l~~~~~~---~~sfnR~NL~--yeV 463 (941)
T KOG0351|consen 391 IDEAHCVSQWGHDFRPSYKRLGLLRIRFPG--VPFIALTATATERVREDVIRSLGLRNPELF---KSSFNRPNLK--YEV 463 (941)
T ss_pred ecHHHHhhhhcccccHHHHHHHHHHhhCCC--CCeEEeehhccHHHHHHHHHHhCCCCccee---cccCCCCCce--EEE
Confidence 99999999998 99999988776654433 77999999999999987777664 44422 1222334443 333
Q ss_pred ecccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCCHHHHHHh
Q 013173 379 VHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIE 446 (448)
Q Consensus 379 ~~~~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~ 446 (448)
.....+ ..+..++....... ....+||||.++++|+.++..|+..|+.+..||++|+..+|+.|
T Consensus 464 ~~k~~~-~~~~~~~~~~~~~~---~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~V 527 (941)
T KOG0351|consen 464 SPKTDK-DALLDILEESKLRH---PDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETV 527 (941)
T ss_pred EeccCc-cchHHHHHHhhhcC---CCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHH
Confidence 333322 22222222222111 26779999999999999999999999999999999999999876
No 72
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.92 E-value=6.5e-25 Score=211.06 Aligned_cols=268 Identities=16% Similarity=0.190 Sum_probs=186.0
Q ss_pred HHHHHHHH-CCCCCC-CHHHHhHHhhHhC-CCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcC
Q 013173 155 ALNLNIRR-CKYVKP-TPVQRHAIPISIG-GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAP 231 (448)
Q Consensus 155 ~l~~~l~~-~~~~~p-t~~Q~~~i~~i~~-g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~P 231 (448)
.+.++|++ +|+.++ ++.|..++..+.. .+||.|+.|||+||++||+||.|.. +...||++|
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~----------------~gITIV~SP 69 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH----------------GGITIVISP 69 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh----------------CCeEEEehH
Confidence 34555653 577775 7999999998774 5899999999999999999998741 235999999
Q ss_pred cHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHHhc------CccEEEeChHHHHHH----HhcccccCCCeeEE
Q 013173 232 TRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELER------GVDILVATPGRLVDL----LERARVSLQMIRYL 301 (448)
Q Consensus 232 treL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~------~~~Ilv~Tp~~l~~~----l~~~~~~l~~v~~l 301 (448)
..+|+.++.+.+.++ .+.+..+.+-.+..+..+.+.+ ...+|+-||+....- +.+...+-.-+.|+
T Consensus 70 LiALIkDQiDHL~~L----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~ 145 (641)
T KOG0352|consen 70 LIALIKDQIDHLKRL----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYI 145 (641)
T ss_pred HHHHHHHHHHHHHhc----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeE
Confidence 999999999999996 4555566665555544443322 357899999986321 12222334568999
Q ss_pred EEcCCcccccCC--CHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhh--hcCcEEEEecccccccCceeEEEE
Q 013173 302 ALDEADRMLDMG--FEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDF--LANYIFLAVGRVGSSTDLIVQRVE 377 (448)
Q Consensus 302 VlDEah~ll~~g--f~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~--l~~~~~i~v~~~~~~~~~i~q~~~ 377 (448)
||||||+..+|| |++++..+-..... -....-+.+|||.+++|++.+..- |++|+-++-. ..-..|+...+.
T Consensus 146 vVDEAHCVSQWGHDFRPDYL~LG~LRS~--~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkT--P~FR~NLFYD~~ 221 (641)
T KOG0352|consen 146 VVDEAHCVSQWGHDFRPDYLTLGSLRSV--CPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKT--PTFRDNLFYDNH 221 (641)
T ss_pred EechhhhHhhhccccCcchhhhhhHHhh--CCCCceEEeecccChhHHHHHHHHHhhcCcHHhccC--cchhhhhhHHHH
Confidence 999999999998 99998887654422 234568999999999999877664 4577655321 111122111100
Q ss_pred Eec-ccchHHHHHHHHHHHHhc------CCCCCCCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCCHHHHHHh
Q 013173 378 FVH-ESDKRSHLMDLLHAQVAN------GVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIE 446 (448)
Q Consensus 378 ~~~-~~~k~~~L~~ll~~~~~~------~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~ 446 (448)
+-+ -.+-...|.++-....-+ ...+..+-.||||.|++.|++++-.|...|+++.+||.++...||..+
T Consensus 222 ~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeV 297 (641)
T KOG0352|consen 222 MKSFITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEV 297 (641)
T ss_pred HHHHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHH
Confidence 000 022334455544332111 011123558999999999999999999999999999999999999765
No 73
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.91 E-value=3.7e-23 Score=220.45 Aligned_cols=130 Identities=21% Similarity=0.222 Sum_probs=109.6
Q ss_pred CCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q 013173 164 KYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEA 243 (448)
Q Consensus 164 ~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~ 243 (448)
|+ .|+++|..+++.+..|+ |+.++||+|||++|++|++...+. ++.++|++||++||.|.++.+
T Consensus 76 g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~-------------G~~v~VvTpt~~LA~qd~e~~ 139 (790)
T PRK09200 76 GM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALE-------------GKGVHLITVNDYLAKRDAEEM 139 (790)
T ss_pred CC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHc-------------CCCeEEEeCCHHHHHHHHHHH
Confidence 44 89999999999988887 999999999999999999865543 345999999999999999999
Q ss_pred HHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHH-HHHHhccc------ccCCCeeEEEEcCCcccc
Q 013173 244 KKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRL-VDLLERAR------VSLQMIRYLALDEADRML 310 (448)
Q Consensus 244 ~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l-~~~l~~~~------~~l~~v~~lVlDEah~ll 310 (448)
..+....++++.++.|+.+...+.+ ....+||+|+||++| .|+|.... ..+..+.++||||||.||
T Consensus 140 ~~l~~~lGl~v~~i~g~~~~~~~r~-~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiL 212 (790)
T PRK09200 140 GQVYEFLGLTVGLNFSDIDDASEKK-AIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSIL 212 (790)
T ss_pred HHHHhhcCCeEEEEeCCCCcHHHHH-HhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccce
Confidence 9999999999999999988543433 345699999999999 66665432 346889999999999986
No 74
>PRK13766 Hef nuclease; Provisional
Probab=99.91 E-value=1.3e-22 Score=222.93 Aligned_cols=161 Identities=24% Similarity=0.215 Sum_probs=125.7
Q ss_pred CCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q 013173 164 KYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEA 243 (448)
Q Consensus 164 ~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~ 243 (448)
+..+|+++|+.++..++.+ |+++++|||+|||+++++++...+.. ...++|||+||++|+.|+.+.+
T Consensus 12 ~~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~------------~~~~vLvl~Pt~~L~~Q~~~~~ 78 (773)
T PRK13766 12 NTIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHK------------KGGKVLILAPTKPLVEQHAEFF 78 (773)
T ss_pred CcCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHh------------CCCeEEEEeCcHHHHHHHHHHH
Confidence 3347899999999888776 99999999999999999988876621 1246999999999999999999
Q ss_pred HHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcccccCCCHHHHHHHHH
Q 013173 244 KKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQ 323 (448)
Q Consensus 244 ~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~ 323 (448)
+++......++..++|+....... .+...++|+|+||+.+...+....+.+.++++|||||||++........+...+.
T Consensus 79 ~~~~~~~~~~v~~~~g~~~~~~r~-~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~ 157 (773)
T PRK13766 79 RKFLNIPEEKIVVFTGEVSPEKRA-ELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYH 157 (773)
T ss_pred HHHhCCCCceEEEEeCCCCHHHHH-HHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHH
Confidence 998655456778888877765433 3344579999999999988888888899999999999999876543333333333
Q ss_pred HcCCCCCCCcEEEEEeccC
Q 013173 324 QMDMPPPGMRQTMLFSATF 342 (448)
Q Consensus 324 ~l~~~~~~~~q~i~~SAT~ 342 (448)
.. ....++++||||.
T Consensus 158 ~~----~~~~~il~lTaTP 172 (773)
T PRK13766 158 ED----AKNPLVLGLTASP 172 (773)
T ss_pred hc----CCCCEEEEEEcCC
Confidence 32 2345799999997
No 75
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.91 E-value=6.6e-23 Score=216.73 Aligned_cols=129 Identities=22% Similarity=0.234 Sum_probs=100.0
Q ss_pred CCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013173 167 KPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF 246 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~ 246 (448)
.|+++|......+..| .+++++||+|||++|++|++...+.. +.++|++|+++||.|.++.+..+
T Consensus 70 rpydVQlig~l~l~~G--~Iaem~TGeGKTLta~Lpa~l~aL~g-------------~~V~VVTpn~yLA~Rdae~m~~l 134 (762)
T TIGR03714 70 FPYDVQVLGAIVLHQG--NIAEMKTGEGKTLTATMPLYLNALTG-------------KGAMLVTTNDYLAKRDAEEMGPV 134 (762)
T ss_pred CccHHHHHHHHHhcCC--ceeEecCCcchHHHHHHHHHHHhhcC-------------CceEEeCCCHHHHHHHHHHHHHH
Confidence 4555555555544444 79999999999999999987655432 24999999999999999999999
Q ss_pred cccCCcEEEEEECCCC---hHHHHHHHhcCccEEEeChHHH-HHHHhcc------cccCCCeeEEEEcCCcccc
Q 013173 247 SYQTGVKVVVAYGGAP---INQQLRELERGVDILVATPGRL-VDLLERA------RVSLQMIRYLALDEADRML 310 (448)
Q Consensus 247 ~~~~~~~~~~~~gg~~---~~~~~~~l~~~~~Ilv~Tp~~l-~~~l~~~------~~~l~~v~~lVlDEah~ll 310 (448)
....++++.+++++.. ...+.+....+|+|+|+||++| .++|... ...+..+.++||||||.||
T Consensus 135 ~~~LGLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsIL 208 (762)
T TIGR03714 135 YEWLGLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVL 208 (762)
T ss_pred HhhcCCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHh
Confidence 9989999988887632 3333445556799999999999 5666332 2447889999999999985
No 76
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.90 E-value=9.5e-23 Score=214.30 Aligned_cols=129 Identities=19% Similarity=0.190 Sum_probs=109.7
Q ss_pred CCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013173 166 VKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK 245 (448)
Q Consensus 166 ~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~ 245 (448)
..|+++|..+.+.+..|+ ++.++||+|||++|.+|++...+.. ..++|++||++||.|.++.+..
T Consensus 55 ~~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~G-------------~~V~VvTpt~~LA~qdae~~~~ 119 (745)
T TIGR00963 55 MRPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALTG-------------KGVHVVTVNDYLAQRDAEWMGQ 119 (745)
T ss_pred CCccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHhC-------------CCEEEEcCCHHHHHHHHHHHHH
Confidence 379999999999888776 9999999999999999996433321 2399999999999999999999
Q ss_pred hcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHH-HHHHhcc------cccCCCeeEEEEcCCccccc
Q 013173 246 FSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRL-VDLLERA------RVSLQMIRYLALDEADRMLD 311 (448)
Q Consensus 246 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l-~~~l~~~------~~~l~~v~~lVlDEah~ll~ 311 (448)
+....++++.+++|+.+....... ..++|+|+||++| .+++..+ .+.+..+.++||||+|.|+-
T Consensus 120 l~~~LGLsv~~i~g~~~~~~r~~~--y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LI 190 (745)
T TIGR00963 120 VYRFLGLSVGLILSGMSPEERREA--YACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILI 190 (745)
T ss_pred HhccCCCeEEEEeCCCCHHHHHHh--cCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhH
Confidence 999999999999999886544333 3589999999999 9998765 34678999999999999864
No 77
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.90 E-value=1.6e-22 Score=223.51 Aligned_cols=236 Identities=20% Similarity=0.246 Sum_probs=155.8
Q ss_pred hHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcC----cHHHHHHHHHHHHH-hcc
Q 013173 174 HAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAP----TRELSSQIHVEAKK-FSY 248 (448)
Q Consensus 174 ~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~P----treL~~qi~~~~~~-~~~ 248 (448)
+.+..+..++.++++|+||||||+ ++|.+.. ..+ ......+++..| +++||.++.+++.. ++.
T Consensus 81 ~Il~ai~~~~VviI~GeTGSGKTT--qlPq~ll--e~g--------~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~ 148 (1294)
T PRK11131 81 DILEAIRDHQVVIVAGETGSGKTT--QLPKICL--ELG--------RGVKGLIGHTQPRRLAARTVANRIAEELETELGG 148 (1294)
T ss_pred HHHHHHHhCCeEEEECCCCCCHHH--HHHHHHH--HcC--------CCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcc
Confidence 344555677788999999999999 5784422 111 011223555667 56888888888874 444
Q ss_pred cCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCc-ccccCCCHHH-HHHHHHHcC
Q 013173 249 QTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEAD-RMLDMGFEPQ-IRKIVQQMD 326 (448)
Q Consensus 249 ~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah-~ll~~gf~~~-i~~i~~~l~ 326 (448)
..|+++.. .. ....+++|+|+|||+|++.+....+ ++++++||||||| ++++.+|... +..++..
T Consensus 149 ~VGY~vrf-------~~---~~s~~t~I~v~TpG~LL~~l~~d~~-Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~-- 215 (1294)
T PRK11131 149 CVGYKVRF-------ND---QVSDNTMVKLMTDGILLAEIQQDRL-LMQYDTIIIDEAHERSLNIDFILGYLKELLPR-- 215 (1294)
T ss_pred eeceeecC-------cc---ccCCCCCEEEEChHHHHHHHhcCCc-cccCcEEEecCccccccccchHHHHHHHhhhc--
Confidence 33333211 11 1234689999999999999987654 9999999999999 6889888653 3333221
Q ss_pred CCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEecccccccCceeEEEEEecccc---hHHHH---HHHHHHHHhcCC
Q 013173 327 MPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESD---KRSHL---MDLLHAQVANGV 400 (448)
Q Consensus 327 ~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~~---k~~~L---~~ll~~~~~~~~ 400 (448)
.++.|+|+||||++.+ .+.+.|...++ +.+. +.. ..+.++|..+...+ +...+ ++.+.....
T Consensus 216 ---rpdlKvILmSATid~e--~fs~~F~~apv-I~V~--Gr~-~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~--- 283 (1294)
T PRK11131 216 ---RPDLKVIITSATIDPE--RFSRHFNNAPI-IEVS--GRT-YPVEVRYRPIVEEADDTERDQLQAIFDAVDELGR--- 283 (1294)
T ss_pred ---CCCceEEEeeCCCCHH--HHHHHcCCCCE-EEEc--Ccc-ccceEEEeecccccchhhHHHHHHHHHHHHHHhc---
Confidence 2468999999999754 66666665554 3332 111 23445555443221 23333 333322211
Q ss_pred CCCCCcEEEEeCchhhHHHHHHHHHHCCCC---eEEecCCCCHHHHHHhh
Q 013173 401 HGKQALTLVFVETKKGADALEHWLYMNGFP---ATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 401 ~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~---~~~iHg~~~q~eR~~~l 447 (448)
...+.+||||+++++++.+++.|...+++ +..+||++++.+|.+++
T Consensus 284 -~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf 332 (1294)
T PRK11131 284 -EGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVF 332 (1294)
T ss_pred -CCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHh
Confidence 12567999999999999999999988765 67899999999999875
No 78
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.89 E-value=1.1e-21 Score=193.72 Aligned_cols=172 Identities=19% Similarity=0.163 Sum_probs=137.5
Q ss_pred CCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q 013173 164 KYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEA 243 (448)
Q Consensus 164 ~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~ 243 (448)
+...++.+|......++.+ |++++.|||.|||++.++.+...+.+.+ + ++|+|+||+.|+.|..+.+
T Consensus 12 ~~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~-----------~-kvlfLAPTKPLV~Qh~~~~ 78 (542)
T COG1111 12 NTIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFG-----------G-KVLFLAPTKPLVLQHAEFC 78 (542)
T ss_pred ccccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcC-----------C-eEEEecCCchHHHHHHHHH
Confidence 3446888999888777655 9999999999999999998887776543 2 5999999999999999999
Q ss_pred HHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcccccCCCHHHHHHHHH
Q 013173 244 KKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQ 323 (448)
Q Consensus 244 ~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~ 323 (448)
+++.....-.++.++|.....+....+.++ .|+|+||+.+.+-|..+.+++.++.+||+||||+-....-.-.+.+.+.
T Consensus 79 ~~v~~ip~~~i~~ltGev~p~~R~~~w~~~-kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~ 157 (542)
T COG1111 79 RKVTGIPEDEIAALTGEVRPEEREELWAKK-KVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYL 157 (542)
T ss_pred HHHhCCChhheeeecCCCChHHHHHHHhhC-CEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHH
Confidence 999887778889999998888777777764 8999999999999999999999999999999999876543344444332
Q ss_pred HcCCCCCCCcEEEEEeccC---chHHHHHHHhh
Q 013173 324 QMDMPPPGMRQTMLFSATF---PKEIQRLASDF 353 (448)
Q Consensus 324 ~l~~~~~~~~q~i~~SAT~---~~~v~~l~~~~ 353 (448)
.- ..+..++++|||. ...+++.+.++
T Consensus 158 ~~----~k~~~ilgLTASPGs~~ekI~eV~~nL 186 (542)
T COG1111 158 RS----AKNPLILGLTASPGSDLEKIQEVVENL 186 (542)
T ss_pred Hh----ccCceEEEEecCCCCCHHHHHHHHHhC
Confidence 22 3445699999996 33444444444
No 79
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.88 E-value=8.4e-22 Score=187.14 Aligned_cols=267 Identities=16% Similarity=0.267 Sum_probs=192.2
Q ss_pred cccCCCCHHHHHHHH-HCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCce
Q 013173 147 FAEIDLGEALNLNIR-RCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPL 225 (448)
Q Consensus 147 f~~l~L~~~l~~~l~-~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~ 225 (448)
-++++.+.+....|+ .+...+++|.|..+|...+.+.|+++..|||.||++||+||+|. ....
T Consensus 73 kd~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~----------------adg~ 136 (695)
T KOG0353|consen 73 KDDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALC----------------ADGF 136 (695)
T ss_pred cCCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHh----------------cCCc
Confidence 346677777777776 45778999999999999999999999999999999999999883 2345
Q ss_pred EEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHH---HHhc---CccEEEeChHHHHH---HHhc--cccc
Q 013173 226 ALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLR---ELER---GVDILVATPGRLVD---LLER--ARVS 294 (448)
Q Consensus 226 ~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~~---~~~Ilv~Tp~~l~~---~l~~--~~~~ 294 (448)
+||+||...|+.++.-.++.+ ++....+...++..+..+ .+.+ ...+|+.||+.+.. ++.+ ..+.
T Consensus 137 alvi~plislmedqil~lkql----gi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~ 212 (695)
T KOG0353|consen 137 ALVICPLISLMEDQILQLKQL----GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALE 212 (695)
T ss_pred eEeechhHHHHHHHHHHHHHh----CcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999986 455555555555433221 1111 25799999999853 2221 2345
Q ss_pred CCCeeEEEEcCCcccccCC--CHHHHHHH--HHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEecccccccC
Q 013173 295 LQMIRYLALDEADRMLDMG--FEPQIRKI--VQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTD 370 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~g--f~~~i~~i--~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~ 370 (448)
...++++.+||+|+..+|| |++++..+ +++- -+...+|.++||.+..+..-+++.+.-...+. .+.+...+
T Consensus 213 ~~~~~~iaidevhccsqwghdfr~dy~~l~ilkrq----f~~~~iigltatatn~vl~d~k~il~ie~~~t-f~a~fnr~ 287 (695)
T KOG0353|consen 213 AGFFKLIAIDEVHCCSQWGHDFRPDYKALGILKRQ----FKGAPIIGLTATATNHVLDDAKDILCIEAAFT-FRAGFNRP 287 (695)
T ss_pred cceeEEEeecceeehhhhCcccCcchHHHHHHHHh----CCCCceeeeehhhhcchhhHHHHHHhHHhhhe-eecccCCC
Confidence 6788999999999999998 88877653 3222 23456999999999999988888764221111 12333444
Q ss_pred ceeEEEEEecc--cchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCCHHHHH
Q 013173 371 LIVQRVEFVHE--SDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTS 444 (448)
Q Consensus 371 ~i~q~~~~~~~--~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~ 444 (448)
++...+..-+. .+-.+.+.++++..+ .+...||||-+++.|+.++..|..+|+.+..||..|.+.+|.
T Consensus 288 nl~yev~qkp~n~dd~~edi~k~i~~~f------~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks 357 (695)
T KOG0353|consen 288 NLKYEVRQKPGNEDDCIEDIAKLIKGDF------AGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKS 357 (695)
T ss_pred CceeEeeeCCCChHHHHHHHHHHhcccc------CCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccc
Confidence 44333322221 122233334444333 266789999999999999999999999999999999988774
No 80
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.88 E-value=2e-22 Score=214.36 Aligned_cols=149 Identities=15% Similarity=0.206 Sum_probs=132.0
Q ss_pred ccCCCCHHHHHHHH-----HCCCCCC---CHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCC
Q 013173 148 AEIDLGEALNLNIR-----RCKYVKP---TPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGS 219 (448)
Q Consensus 148 ~~l~L~~~l~~~l~-----~~~~~~p---t~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~ 219 (448)
+.+.+.+++...+. .+||..| +|+|.++||.++.+++++++++||+|||++|++|++..++...
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g~-------- 136 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTGK-------- 136 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhcC--------
Confidence 45778888888877 6899999 9999999999999999999999999999999999998776421
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHH-HHHHhcccccCC--
Q 013173 220 RTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRL-VDLLERARVSLQ-- 296 (448)
Q Consensus 220 ~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l-~~~l~~~~~~l~-- 296 (448)
.++||+||++||.|+++.+..+....++++.+++||.+...+...+ +|||+|+||++| +++++.+.+.++
T Consensus 137 -----~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~~~~~~~~ 209 (970)
T PRK12899 137 -----PVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDNSIATRKE 209 (970)
T ss_pred -----CeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCCCCCcCHH
Confidence 2899999999999999999999998999999999999988887655 599999999999 999998766665
Q ss_pred -----CeeEEEEcCCccccc
Q 013173 297 -----MIRYLALDEADRMLD 311 (448)
Q Consensus 297 -----~v~~lVlDEah~ll~ 311 (448)
.+.++||||||.||-
T Consensus 210 ~~vqr~~~~~IIDEADsmLi 229 (970)
T PRK12899 210 EQVGRGFYFAIIDEVDSILI 229 (970)
T ss_pred HhhcccccEEEEechhhhhh
Confidence 458999999999873
No 81
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.88 E-value=4.1e-21 Score=204.69 Aligned_cols=127 Identities=22% Similarity=0.211 Sum_probs=105.4
Q ss_pred CCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013173 167 KPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF 246 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~ 246 (448)
.|.++|-..--.+..| -|+.++||+|||++|.+|++..++.. ..++||+||++||.|.++.+..+
T Consensus 82 ~~ydvQliGg~~Lh~G--~Iaem~TGeGKTL~a~Lpa~~~al~G-------------~~V~VvTpn~yLA~qd~e~m~~l 146 (896)
T PRK13104 82 RHFDVQLIGGMVLHEG--NIAEMRTGEGKTLVATLPAYLNAISG-------------RGVHIVTVNDYLAKRDSQWMKPI 146 (896)
T ss_pred CcchHHHhhhhhhccC--ccccccCCCCchHHHHHHHHHHHhcC-------------CCEEEEcCCHHHHHHHHHHHHHH
Confidence 5677776655455444 48999999999999999999776532 23899999999999999999999
Q ss_pred cccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHH-HHHHhcc-cccC-----CCeeEEEEcCCcccc
Q 013173 247 SYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRL-VDLLERA-RVSL-----QMIRYLALDEADRML 310 (448)
Q Consensus 247 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l-~~~l~~~-~~~l-----~~v~~lVlDEah~ll 310 (448)
...+++++.+++||.+...+.... .+||+|+||++| .|+|..+ .+++ ..+.++||||||.||
T Consensus 147 ~~~lGLtv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiL 215 (896)
T PRK13104 147 YEFLGLTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSIL 215 (896)
T ss_pred hcccCceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhh
Confidence 999999999999998877654443 589999999999 9999876 3344 589999999999986
No 82
>PRK09694 helicase Cas3; Provisional
Probab=99.87 E-value=1.4e-20 Score=204.05 Aligned_cols=261 Identities=16% Similarity=0.142 Sum_probs=161.1
Q ss_pred CCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q 013173 165 YVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAK 244 (448)
Q Consensus 165 ~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~ 244 (448)
...|+|+|+.+........-+++.||||+|||.+.++.+.. +.... ...+++|.+||+++++|++++++
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~-l~~~~----------~~~gi~~aLPT~Atan~m~~Rl~ 352 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWR-LIDQG----------LADSIIFALPTQATANAMLSRLE 352 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHH-HHHhC----------CCCeEEEECcHHHHHHHHHHHHH
Confidence 45899999988655445667999999999999998776553 33221 12359999999999999999998
Q ss_pred Hhccc--CCcEEEEEECCCChHHHHH--------------------HH----hc---CccEEEeChHHHHHHHhccc-cc
Q 013173 245 KFSYQ--TGVKVVVAYGGAPINQQLR--------------------EL----ER---GVDILVATPGRLVDLLERAR-VS 294 (448)
Q Consensus 245 ~~~~~--~~~~~~~~~gg~~~~~~~~--------------------~l----~~---~~~Ilv~Tp~~l~~~l~~~~-~~ 294 (448)
++... ....+.+++|......... .+ .+ -.+|+|+|+.+++..+...+ ..
T Consensus 353 ~~~~~~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~ 432 (878)
T PRK09694 353 ALASKLFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRF 432 (878)
T ss_pred HHHHHhcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHH
Confidence 65421 1346777777654221110 11 11 15899999999986543322 11
Q ss_pred CCC----eeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcC---------cEEEE
Q 013173 295 LQM----IRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLAN---------YIFLA 361 (448)
Q Consensus 295 l~~----v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~---------~~~i~ 361 (448)
+.. -++|||||+|.+ +......+..+++.+. .....+|+||||+|..+++.+...+.. |-.+.
T Consensus 433 lR~~~La~svvIiDEVHAy-D~ym~~lL~~~L~~l~---~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt 508 (878)
T PRK09694 433 IRGFGLGRSVLIVDEVHAY-DAYMYGLLEAVLKAQA---QAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLIT 508 (878)
T ss_pred HHHHhhccCeEEEechhhC-CHHHHHHHHHHHHHHH---hcCCcEEEEeCCCCHHHHHHHHHHhcccccccccccccccc
Confidence 222 258999999987 4344455666666653 234569999999999886543332211 00010
Q ss_pred e-c-----ccccccC----ceeEEE--EEe--cccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHC
Q 013173 362 V-G-----RVGSSTD----LIVQRV--EFV--HESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN 427 (448)
Q Consensus 362 v-~-----~~~~~~~----~i~q~~--~~~--~~~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~ 427 (448)
. . ....... .....+ ... ........+++.+..... +++++||||||++.|+.+++.|...
T Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~-----~g~~vLVf~NTV~~Aq~ly~~L~~~ 583 (878)
T PRK09694 509 WRGVNGAQRFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAAN-----AGAQVCLICNLVDDAQKLYQRLKEL 583 (878)
T ss_pred ccccccceeeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHh-----cCCEEEEEECCHHHHHHHHHHHHhh
Confidence 0 0 0000000 011111 111 111122333333333221 2678999999999999999999876
Q ss_pred C---CCeEEecCCCCHHHHHH
Q 013173 428 G---FPATTIHGDRTQQRTSI 445 (448)
Q Consensus 428 g---~~~~~iHg~~~q~eR~~ 445 (448)
+ .++..+||.+++.+|.+
T Consensus 584 ~~~~~~v~llHsrf~~~dR~~ 604 (878)
T PRK09694 584 NNTQVDIDLFHARFTLNDRRE 604 (878)
T ss_pred CCCCceEEEEeCCCCHHHHHH
Confidence 4 68999999999999953
No 83
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.87 E-value=1.1e-20 Score=171.72 Aligned_cols=188 Identities=43% Similarity=0.641 Sum_probs=156.0
Q ss_pred HCCCCCCCHHHHhHHhhHhCC-CCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHH
Q 013173 162 RCKYVKPTPVQRHAIPISIGG-RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIH 240 (448)
Q Consensus 162 ~~~~~~pt~~Q~~~i~~i~~g-~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~ 240 (448)
..++.+|+++|.+++..+... ++++++++||+|||.+++.+++..+.... ...+||++|++.++.|+.
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~-----------~~~~l~~~p~~~~~~~~~ 71 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK-----------GKRVLVLVPTRELAEQWA 71 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC-----------CCcEEEEeCCHHHHHHHH
Confidence 346788999999999999988 99999999999999999999888775432 235999999999999999
Q ss_pred HHHHHhcccCCcEEEEEECCCChHHHHHHHhcCc-cEEEeChHHHHHHHhcccccCCCeeEEEEcCCcccccCCCHHHHH
Q 013173 241 VEAKKFSYQTGVKVVVAYGGAPINQQLRELERGV-DILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIR 319 (448)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~-~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~ 319 (448)
..+.++............++.........+..+. +|+++|++.+.+.+.........++++||||||.+....+...+.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~ 151 (201)
T smart00487 72 EELKKLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLE 151 (201)
T ss_pred HHHHHHhccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHH
Confidence 9999877554434555566666556666666666 999999999999998877778889999999999998767888888
Q ss_pred HHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEecc
Q 013173 320 KIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGR 364 (448)
Q Consensus 320 ~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~ 364 (448)
.++..+ +...+++++|||++..+...+..++.+.+.+....
T Consensus 152 ~~~~~~----~~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~~ 192 (201)
T smart00487 152 KLLKLL----PKNVQLLLLSATPPEEIENLLELFLNDPVFIDVGP 192 (201)
T ss_pred HHHHhC----CccceEEEEecCCchhHHHHHHHhcCCCEEEeCCc
Confidence 888877 55678999999999999999999888777776543
No 84
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.87 E-value=4.4e-20 Score=198.22 Aligned_cols=249 Identities=18% Similarity=0.170 Sum_probs=164.6
Q ss_pred CCCHHHHhHHhhHhC---CCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q 013173 167 KPTPVQRHAIPISIG---GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEA 243 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~~---g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~ 243 (448)
.+|+.|++++..+.. +++++++++||||||.+|+.++...+.. +.++|||+||++|+.|+++.+
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~-------------g~~vLvLvPt~~L~~Q~~~~l 210 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ-------------GKQALVLVPEIALTPQMLARF 210 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc-------------CCeEEEEeCcHHHHHHHHHHH
Confidence 589999999999987 4789999999999999998877665532 246999999999999999999
Q ss_pred HHhcccCCcEEEEEECCCChHHHHHHH---h-cCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcccccCC---CHH
Q 013173 244 KKFSYQTGVKVVVAYGGAPINQQLREL---E-RGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMG---FEP 316 (448)
Q Consensus 244 ~~~~~~~~~~~~~~~gg~~~~~~~~~l---~-~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~g---f~~ 316 (448)
++.. +.++..++++.+..+....+ . ..++|+|+|++.+. ..++++.+|||||+|...-.. ..-
T Consensus 211 ~~~f---g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y 280 (679)
T PRK05580 211 RARF---GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRY 280 (679)
T ss_pred HHHh---CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCC
Confidence 8753 56888999998876554333 3 34799999998874 357899999999999764321 111
Q ss_pred HHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEecccccccCceeEEEEEecccc-------hHHHHH
Q 013173 317 QIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESD-------KRSHLM 389 (448)
Q Consensus 317 ~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~~-------k~~~L~ 389 (448)
+.+.+...... ..+.|+|++|||.+.+....+.. ..+..+...............+..+.... -...|+
T Consensus 281 ~~r~va~~ra~--~~~~~~il~SATps~~s~~~~~~--g~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~ 356 (679)
T PRK05580 281 HARDLAVVRAK--LENIPVVLGSATPSLESLANAQQ--GRYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLL 356 (679)
T ss_pred cHHHHHHHHhh--ccCCCEEEEcCCCCHHHHHHHhc--cceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHH
Confidence 22333221111 34678999999988776655432 12223322211111111111122221111 113455
Q ss_pred HHHHHHHhcCCCCCCCcEEEEeCch-------------------------------------------------------
Q 013173 390 DLLHAQVANGVHGKQALTLVFVETK------------------------------------------------------- 414 (448)
Q Consensus 390 ~ll~~~~~~~~~~~~~~tlVF~~t~------------------------------------------------------- 414 (448)
+.+..... .+.++|||+|++
T Consensus 357 ~~i~~~l~-----~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~ 431 (679)
T PRK05580 357 EAIKQRLE-----RGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTD 431 (679)
T ss_pred HHHHHHHH-----cCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCe
Confidence 55554432 266789998863
Q ss_pred -----hhHHHHHHHHHHC--CCCeEEecCCCCH--HHHHHhh
Q 013173 415 -----KGADALEHWLYMN--GFPATTIHGDRTQ--QRTSIEI 447 (448)
Q Consensus 415 -----~~a~~l~~~L~~~--g~~~~~iHg~~~q--~eR~~~l 447 (448)
..++.+++.|... +.++..+|+|+++ .+|+++|
T Consensus 432 l~~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l 473 (679)
T PRK05580 432 LVPVGPGTERLEEELAELFPEARILRIDRDTTRRKGALEQLL 473 (679)
T ss_pred eEEeeccHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHH
Confidence 2567889999886 8899999999975 4566554
No 85
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.86 E-value=4e-20 Score=196.93 Aligned_cols=128 Identities=20% Similarity=0.189 Sum_probs=106.7
Q ss_pred CCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013173 166 VKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK 245 (448)
Q Consensus 166 ~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~ 245 (448)
..|+++|--..-.+..|+ ++.++||+|||+++.+|++-..+.. ..+-|++||.+||.|.++.+..
T Consensus 80 ~~~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL~G-------------~~V~IvTpn~yLA~rd~e~~~~ 144 (830)
T PRK12904 80 MRHFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNALTG-------------KGVHVVTVNDYLAKRDAEWMGP 144 (830)
T ss_pred CCCCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHHcC-------------CCEEEEecCHHHHHHHHHHHHH
Confidence 368888988776666664 9999999999999999996333321 1277999999999999999999
Q ss_pred hcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHH-HHHHhccc------ccCCCeeEEEEcCCcccc
Q 013173 246 FSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRL-VDLLERAR------VSLQMIRYLALDEADRML 310 (448)
Q Consensus 246 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l-~~~l~~~~------~~l~~v~~lVlDEah~ll 310 (448)
+....++++.+++++.+..++.... .+||+|+||++| .|+|.... ..+..+.++||||||.||
T Consensus 145 l~~~LGlsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiL 214 (830)
T PRK12904 145 LYEFLGLSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSIL 214 (830)
T ss_pred HHhhcCCeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhhe
Confidence 9999999999999998887665554 489999999999 99997654 246789999999999986
No 86
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.85 E-value=1.9e-19 Score=199.97 Aligned_cols=250 Identities=19% Similarity=0.203 Sum_probs=163.5
Q ss_pred CCCCCCHHHH---hHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHH
Q 013173 164 KYVKPTPVQR---HAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIH 240 (448)
Q Consensus 164 ~~~~pt~~Q~---~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~ 240 (448)
.|...-|+.+ +.+..+..++.++++|+||||||+ ++|.+. +..+ .....+++++.|.|--|..++
T Consensus 61 ~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTT--qlPq~l--le~~--------~~~~~~I~~tQPRRlAA~svA 128 (1283)
T TIGR01967 61 RYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTT--QLPKIC--LELG--------RGSHGLIGHTQPRRLAARTVA 128 (1283)
T ss_pred cCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHH--HHHHHH--HHcC--------CCCCceEecCCccHHHHHHHH
Confidence 4544455544 344455567789999999999999 567553 2211 112235778889999888887
Q ss_pred HHHHHh-cccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCc-ccccCCCHHH-
Q 013173 241 VEAKKF-SYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEAD-RMLDMGFEPQ- 317 (448)
Q Consensus 241 ~~~~~~-~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah-~ll~~gf~~~- 317 (448)
..+.+. ....|..|........ + ......|.|+|+|+|++.+.... .+..+++||||||| ++++.+|.-.
T Consensus 129 ~RvA~elg~~lG~~VGY~vR~~~---~---~s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~~D~LL~l 201 (1283)
T TIGR01967 129 QRIAEELGTPLGEKVGYKVRFHD---Q---VSSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLNIDFLLGY 201 (1283)
T ss_pred HHHHHHhCCCcceEEeeEEcCCc---c---cCCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhccchhHHHH
Confidence 776553 2233333332111111 1 23457899999999999987765 48999999999999 5889887654
Q ss_pred HHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEecccccccCceeEEEEEecc------cchHHHHHHH
Q 013173 318 IRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHE------SDKRSHLMDL 391 (448)
Q Consensus 318 i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~------~~k~~~L~~l 391 (448)
+..++.. .++.|+|+||||++. ..+.+.|...++ +.+. +. ...+..+|..... .++...+.+.
T Consensus 202 Lk~il~~-----rpdLKlIlmSATld~--~~fa~~F~~apv-I~V~--Gr-~~PVev~Y~~~~~~~~~~~~~~~~~i~~~ 270 (1283)
T TIGR01967 202 LKQLLPR-----RPDLKIIITSATIDP--ERFSRHFNNAPI-IEVS--GR-TYPVEVRYRPLVEEQEDDDLDQLEAILDA 270 (1283)
T ss_pred HHHHHhh-----CCCCeEEEEeCCcCH--HHHHHHhcCCCE-EEEC--CC-cccceeEEecccccccchhhhHHHHHHHH
Confidence 4555433 346799999999974 466666655554 3332 11 1223334433321 1234445555
Q ss_pred HHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCC---CCeEEecCCCCHHHHHHhh
Q 013173 392 LHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNG---FPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 392 l~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g---~~~~~iHg~~~q~eR~~~l 447 (448)
+...... ..+.+||||+++.+++.+++.|...+ +.+..+||+|++++|++++
T Consensus 271 I~~l~~~----~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf 325 (1283)
T TIGR01967 271 VDELFAE----GPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVF 325 (1283)
T ss_pred HHHHHhh----CCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHh
Confidence 5443221 25679999999999999999998775 4588999999999999875
No 87
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.85 E-value=6.2e-20 Score=190.98 Aligned_cols=175 Identities=18% Similarity=0.125 Sum_probs=129.9
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcC
Q 013173 152 LGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAP 231 (448)
Q Consensus 152 L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~P 231 (448)
+++...+...--....++.+|.+.+..++ |+|+||++|||+|||+++...+++++-+.. ..++|+++|
T Consensus 47 ~~~s~~~~~~~p~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p-----------~~KiVF~aP 114 (746)
T KOG0354|consen 47 LDESAAQRWIYPTNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRP-----------KGKVVFLAP 114 (746)
T ss_pred CChhhhccccccCcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCC-----------cceEEEeeC
Confidence 34444444443455578999999999888 999999999999999999999988876543 256999999
Q ss_pred cHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhccccc-CCCeeEEEEcCCcccc
Q 013173 232 TRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVS-LQMIRYLALDEADRML 310 (448)
Q Consensus 232 treL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~-l~~v~~lVlDEah~ll 310 (448)
|+-|+.|+...+..++.. ..+....||.........+-..++|+|+||+.|.+.|..+..+ |+.+.++||||||+-.
T Consensus 115 ~~pLv~QQ~a~~~~~~~~--~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~ 192 (746)
T KOG0354|consen 115 TRPLVNQQIACFSIYLIP--YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTS 192 (746)
T ss_pred CchHHHHHHHHHhhccCc--ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEccccccc
Confidence 999999999888887654 5566666664433333344445899999999999999876543 6999999999999987
Q ss_pred cCCCHHHHH-HHHHHcCCCCCCCcEEEEEeccCch
Q 013173 311 DMGFEPQIR-KIVQQMDMPPPGMRQTMLFSATFPK 344 (448)
Q Consensus 311 ~~gf~~~i~-~i~~~l~~~~~~~~q~i~~SAT~~~ 344 (448)
...-...+. ..+..- ....|+|++|||+..
T Consensus 193 kn~~Y~~Vmr~~l~~k----~~~~qILgLTASpG~ 223 (746)
T KOG0354|consen 193 KNHPYNNIMREYLDLK----NQGNQILGLTASPGS 223 (746)
T ss_pred ccccHHHHHHHHHHhh----hccccEEEEecCCCc
Confidence 655333333 333332 222399999999743
No 88
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.82 E-value=4e-19 Score=188.06 Aligned_cols=241 Identities=15% Similarity=0.132 Sum_probs=153.7
Q ss_pred CCCCHHHHhHHhhHh-CC--CCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 013173 166 VKPTPVQRHAIPISI-GG--RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVE 242 (448)
Q Consensus 166 ~~pt~~Q~~~i~~i~-~g--~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~ 242 (448)
..++|+|++++..++ ++ +..++++|||+|||++.+..+ ..+. ..+|||||+.+|+.|..++
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa-~~l~---------------k~tLILvps~~Lv~QW~~e 317 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAA-CTVK---------------KSCLVLCTSAVSVEQWKQQ 317 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHH-HHhC---------------CCEEEEeCcHHHHHHHHHH
Confidence 468999999998877 44 468999999999999976443 2221 1399999999999999999
Q ss_pred HHHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcc--------cccCCCeeEEEEcCCcccccCCC
Q 013173 243 AKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA--------RVSLQMIRYLALDEADRMLDMGF 314 (448)
Q Consensus 243 ~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~--------~~~l~~v~~lVlDEah~ll~~gf 314 (448)
+.++.......+..++|+... ......+|+|+|+..+.....+. .+.-..+.+||+||||++..
T Consensus 318 f~~~~~l~~~~I~~~tg~~k~-----~~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA--- 389 (732)
T TIGR00603 318 FKMWSTIDDSQICRFTSDAKE-----RFHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA--- 389 (732)
T ss_pred HHHhcCCCCceEEEEecCccc-----ccccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH---
Confidence 999865445566665554321 11123689999998875432211 12234678999999999854
Q ss_pred HHHHHHHHHHcCCCCCCCcEEEEEeccCchHHH--HHHHhhhcCcEEEEecccccccC----cee---------------
Q 013173 315 EPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQ--RLASDFLANYIFLAVGRVGSSTD----LIV--------------- 373 (448)
Q Consensus 315 ~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~--~l~~~~l~~~~~i~v~~~~~~~~----~i~--------------- 373 (448)
+.++.++..+. . ...++||||+..+-. ..+. ++-.|....+.-.+.... .+.
T Consensus 390 -~~fr~il~~l~----a-~~RLGLTATP~ReD~~~~~L~-~LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~ 462 (732)
T TIGR00603 390 -AMFRRVLTIVQ----A-HCKLGLTATLVREDDKITDLN-FLIGPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYRE 462 (732)
T ss_pred -HHHHHHHHhcC----c-CcEEEEeecCcccCCchhhhh-hhcCCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHH
Confidence 56677777762 2 236999999853211 1111 122222222211111000 000
Q ss_pred --------EEEEEecccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCCHHHHHH
Q 013173 374 --------QRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSI 445 (448)
Q Consensus 374 --------q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~ 445 (448)
....+.....|...+..++..+.. .+.++||||+++..++.++..|. +..|||++++.||++
T Consensus 463 yl~~~~~~k~~l~~~np~K~~~~~~Li~~he~-----~g~kiLVF~~~~~~l~~~a~~L~-----~~~I~G~ts~~ER~~ 532 (732)
T TIGR00603 463 YLRENSRKRMLLYVMNPNKFRACQFLIRFHEQ-----RGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQQERMQ 532 (732)
T ss_pred HHHhcchhhhHHhhhChHHHHHHHHHHHHHhh-----cCCeEEEEeCCHHHHHHHHHHcC-----CceEECCCCHHHHHH
Confidence 000111123345555555554321 27789999999999999999872 567999999999999
Q ss_pred hh
Q 013173 446 EI 447 (448)
Q Consensus 446 ~l 447 (448)
++
T Consensus 533 il 534 (732)
T TIGR00603 533 IL 534 (732)
T ss_pred HH
Confidence 86
No 89
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.81 E-value=6e-19 Score=188.10 Aligned_cols=262 Identities=19% Similarity=0.195 Sum_probs=177.3
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHhHHhhHhCC-CCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEc
Q 013173 152 LGEALNLNIRRCKYVKPTPVQRHAIPISIGG-RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILA 230 (448)
Q Consensus 152 L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g-~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~ 230 (448)
++.+-..++. |+.+++++|....+.++.+ .++++|||||+|||...++.+|+.+-.+... ....+....++++++
T Consensus 296 lP~Wnq~aF~--g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~--dgs~nl~~fKIVYIA 371 (1674)
T KOG0951|consen 296 LPKWNQPAFF--GKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLRE--DGSVNLAPFKIVYIA 371 (1674)
T ss_pred Ccchhhhhcc--cchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhccccc--ccceecccceEEEEe
Confidence 4444444443 6777999999999998865 6799999999999999999999988654321 112234456799999
Q ss_pred CcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhccc--ccCCCeeEEEEcCCcc
Q 013173 231 PTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERAR--VSLQMIRYLALDEADR 308 (448)
Q Consensus 231 PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~--~~l~~v~~lVlDEah~ 308 (448)
|+.+||+.+...+.+-....+++|..++|......+.- .+.+|+|+||+..--+-++.. -..+-++++|+||+|.
T Consensus 372 PmKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~qi---eeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHL 448 (1674)
T KOG0951|consen 372 PMKALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQI---EETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHL 448 (1674)
T ss_pred eHHHHHHHHHHHHHhhccccCcEEEEecccccchhhhh---hcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhh
Confidence 99999999999998888888999999999877543322 247999999999854444321 2245688999999996
Q ss_pred cccCCCHHHHHHHHHHcC---CCCCCCcEEEEEeccCchHHHHHHHhhhc-CcEEEEecccccccCceeEEEEEeccc--
Q 013173 309 MLDMGFEPQIRKIVQQMD---MPPPGMRQTMLFSATFPKEIQRLASDFLA-NYIFLAVGRVGSSTDLIVQRVEFVHES-- 382 (448)
Q Consensus 309 ll~~gf~~~i~~i~~~l~---~~~~~~~q~i~~SAT~~~~v~~l~~~~l~-~~~~i~v~~~~~~~~~i~q~~~~~~~~-- 382 (448)
+-| ...+.++.|+.+.. +......+++++|||+|+- .+.+ .|+. ++..++.....--+..+.|.|+-+...
T Consensus 449 LhD-dRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy-~DV~-~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~ 525 (1674)
T KOG0951|consen 449 LHD-DRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNY-EDVA-SFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKP 525 (1674)
T ss_pred ccc-ccchHHHHHHHHHHHHhhhcccCceeeeecccCCch-hhhH-HHhccCcccccccCcccCcCCccceEeccccCCc
Confidence 644 45577766665542 1223457899999999965 2223 3333 443333333333344556666666433
Q ss_pred chH-HHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHH
Q 013173 383 DKR-SHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLY 425 (448)
Q Consensus 383 ~k~-~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~ 425 (448)
.|. ..+-+........+ .+ ..++||||.+++++-+.|..++
T Consensus 526 ~~~~qamNe~~yeKVm~~-ag-k~qVLVFVHsRkET~ktA~aIR 567 (1674)
T KOG0951|consen 526 LKRFQAMNEACYEKVLEH-AG-KNQVLVFVHSRKETAKTARAIR 567 (1674)
T ss_pred hHHHHHHHHHHHHHHHHh-CC-CCcEEEEEEechHHHHHHHHHH
Confidence 333 22333333332222 23 4789999999999888888776
No 90
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.80 E-value=2e-18 Score=186.19 Aligned_cols=176 Identities=23% Similarity=0.280 Sum_probs=138.7
Q ss_pred HHHCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHH
Q 013173 160 IRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQI 239 (448)
Q Consensus 160 l~~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi 239 (448)
....+| ++-++|++++-++..+..|++|||||+|||++....+-..+.+. -++++++|.++|.+|.
T Consensus 113 ~~~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~~-------------qrviYTsPIKALsNQK 178 (1041)
T COG4581 113 AREYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRDG-------------QRVIYTSPIKALSNQK 178 (1041)
T ss_pred HHhCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHcC-------------CceEeccchhhhhhhH
Confidence 344455 78999999999999999999999999999999877766555432 2399999999999999
Q ss_pred HHHHHHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcccccCCCHHHHH
Q 013173 240 HVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIR 319 (448)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~ 319 (448)
+..+........--+.+++|...+. ....|+|.|.+.|.+++..+...+..+.+||+||+|.|-+......++
T Consensus 179 yrdl~~~fgdv~~~vGL~TGDv~IN-------~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWE 251 (1041)
T COG4581 179 YRDLLAKFGDVADMVGLMTGDVSIN-------PDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWE 251 (1041)
T ss_pred HHHHHHHhhhhhhhccceecceeeC-------CCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHH
Confidence 9888754321122345666665543 347899999999999999988889999999999999999988888899
Q ss_pred HHHHHcCCCCCCCcEEEEEeccCchH--HHHHHHhhhcCcEEE
Q 013173 320 KIVQQMDMPPPGMRQTMLFSATFPKE--IQRLASDFLANYIFL 360 (448)
Q Consensus 320 ~i~~~l~~~~~~~~q~i~~SAT~~~~--v~~l~~~~l~~~~~i 360 (448)
.++.++ |...|+++||||.|+. ...++...-..++.+
T Consensus 252 E~Ii~l----P~~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~v 290 (1041)
T COG4581 252 EVIILL----PDHVRFVFLSATVPNAEEFAEWIQRVHSQPIHV 290 (1041)
T ss_pred HHHHhc----CCCCcEEEEeCCCCCHHHHHHHHHhccCCCeEE
Confidence 999999 8889999999999654 334444333344444
No 91
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.80 E-value=1.7e-18 Score=177.55 Aligned_cols=244 Identities=21% Similarity=0.208 Sum_probs=151.5
Q ss_pred CCCCCHHHHhHHhhHhC----CCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHH
Q 013173 165 YVKPTPVQRHAIPISIG----GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIH 240 (448)
Q Consensus 165 ~~~pt~~Q~~~i~~i~~----g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~ 240 (448)
..+++++|++++..+.+ .+..++++|||+|||.+++..+- .+. ..+|||+||++|+.|..
T Consensus 34 ~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~-~~~---------------~~~Lvlv~~~~L~~Qw~ 97 (442)
T COG1061 34 EFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIA-ELK---------------RSTLVLVPTKELLDQWA 97 (442)
T ss_pred CCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHH-Hhc---------------CCEEEEECcHHHHHHHH
Confidence 34699999999999987 88999999999999998765433 221 12999999999999998
Q ss_pred HHHHHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcccccCCCHHHHHH
Q 013173 241 VEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRK 320 (448)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~ 320 (448)
+.+.++.... ...-.+++.... ... ..|+|+|-+.+........+..+...+||+||||++... ..+.
T Consensus 98 ~~~~~~~~~~--~~~g~~~~~~~~-----~~~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~----~~~~ 165 (442)
T COG1061 98 EALKKFLLLN--DEIGIYGGGEKE-----LEP-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAP----SYRR 165 (442)
T ss_pred HHHHHhcCCc--cccceecCceec-----cCC-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcH----HHHH
Confidence 7777764322 122234443321 111 369999999987642112223457899999999999874 3455
Q ss_pred HHHHcCCCCCCCcEEEEEeccCchHHHHHHHhh--hcCcEEEEeccccccc----CceeEEEEEec--------------
Q 013173 321 IVQQMDMPPPGMRQTMLFSATFPKEIQRLASDF--LANYIFLAVGRVGSST----DLIVQRVEFVH-------------- 380 (448)
Q Consensus 321 i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~--l~~~~~i~v~~~~~~~----~~i~q~~~~~~-------------- 380 (448)
+.+.+... ...++||||++..-......+ +..++...+...+... .........+.
T Consensus 166 ~~~~~~~~----~~~LGLTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~ 241 (442)
T COG1061 166 ILELLSAA----YPRLGLTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESA 241 (442)
T ss_pred HHHhhhcc----cceeeeccCceeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhh
Confidence 55555221 228999999753321111111 0112222222111100 00000001110
Q ss_pred ------------------------ccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCCeEEecC
Q 013173 381 ------------------------ESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHG 436 (448)
Q Consensus 381 ------------------------~~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg 436 (448)
...+...+..++.... .+.++||||.++.+++.++..|...++ +..+.+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~ 314 (442)
T COG1061 242 RFRELLRARGTLRAENEARRIAIASERKIAAVRGLLLKHA------RGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITG 314 (442)
T ss_pred hhhhhhhhhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhc------CCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEEC
Confidence 0111112222222211 267899999999999999999999888 999999
Q ss_pred CCCHHHHHHhh
Q 013173 437 DRTQQRTSIEI 447 (448)
Q Consensus 437 ~~~q~eR~~~l 447 (448)
+.++.||+.+|
T Consensus 315 ~t~~~eR~~il 325 (442)
T COG1061 315 ETPKEEREAIL 325 (442)
T ss_pred CCCHHHHHHHH
Confidence 99999999886
No 92
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.77 E-value=2.1e-17 Score=176.07 Aligned_cols=128 Identities=19% Similarity=0.197 Sum_probs=103.1
Q ss_pred CCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013173 167 KPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF 246 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~ 246 (448)
.|+++|--.--.+.. --|+.++||.|||++|.+|++...+... .|.||+|+.+||.|.++.+..+
T Consensus 82 ~~ydVQliGgl~L~~--G~IaEm~TGEGKTL~a~lp~~l~al~g~-------------~VhIvT~ndyLA~RD~e~m~~l 146 (908)
T PRK13107 82 RHFDVQLLGGMVLDS--NRIAEMRTGEGKTLTATLPAYLNALTGK-------------GVHVITVNDYLARRDAENNRPL 146 (908)
T ss_pred CcCchHHhcchHhcC--CccccccCCCCchHHHHHHHHHHHhcCC-------------CEEEEeCCHHHHHHHHHHHHHH
Confidence 577777755444444 4589999999999999999987665432 2999999999999999999999
Q ss_pred cccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHH-HHHHhcc-cccC-----CCeeEEEEcCCccccc
Q 013173 247 SYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRL-VDLLERA-RVSL-----QMIRYLALDEADRMLD 311 (448)
Q Consensus 247 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l-~~~l~~~-~~~l-----~~v~~lVlDEah~ll~ 311 (448)
....|+++.++.++.+... +.-.-.|||+++||+.| .|+|..+ .++. ..+.++||||||.||-
T Consensus 147 ~~~lGlsv~~i~~~~~~~~--r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLi 216 (908)
T PRK13107 147 FEFLGLTVGINVAGLGQQE--KKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILI 216 (908)
T ss_pred HHhcCCeEEEecCCCCHHH--HHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhcc
Confidence 9999999999999888633 22233689999999999 9988765 3333 7789999999998863
No 93
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.77 E-value=1.7e-17 Score=172.44 Aligned_cols=223 Identities=18% Similarity=0.187 Sum_probs=143.1
Q ss_pred eEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHH
Q 013173 186 MACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQ 265 (448)
Q Consensus 186 lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~ 265 (448)
++.++||||||.+|+..+.. ++.. +.++|||+|+++|+.|+++.+++.. +.++.+++++.+..+
T Consensus 1 LL~g~TGsGKT~v~l~~i~~-~l~~------------g~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~e 64 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEK-VLAL------------GKSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSE 64 (505)
T ss_pred CccCCCCCCHHHHHHHHHHH-HHHc------------CCeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHH
Confidence 46899999999999665443 3322 2359999999999999999998743 467888888887655
Q ss_pred HHHHH---hc-CccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcccccCC---CH---HHHHHHHHHcCCCCCCCcEE
Q 013173 266 QLREL---ER-GVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMG---FE---PQIRKIVQQMDMPPPGMRQT 335 (448)
Q Consensus 266 ~~~~l---~~-~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~g---f~---~~i~~i~~~l~~~~~~~~q~ 335 (448)
..+.+ .. .++|+|+|+..+. ..+.++.+|||||+|...-.. .. .++...... ....++
T Consensus 65 r~~~~~~~~~g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~-----~~~~~v 132 (505)
T TIGR00595 65 KLQAWRKVKNGEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAK-----KFNCPV 132 (505)
T ss_pred HHHHHHHHHcCCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHH-----hcCCCE
Confidence 43333 33 4799999998763 357889999999999875322 11 122223333 235679
Q ss_pred EEEeccCchHHHHHHHhhhcCcEEEEecccccccCceeEEEEEecccch----HHHHHHHHHHHHhcCCCCCCCcEEEEe
Q 013173 336 MLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDK----RSHLMDLLHAQVANGVHGKQALTLVFV 411 (448)
Q Consensus 336 i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~~k----~~~L~~ll~~~~~~~~~~~~~~tlVF~ 411 (448)
|++|||.+.+....+.. ..+..+...............+.......+ ...|++.+...... +.++|||+
T Consensus 133 il~SATPsles~~~~~~--g~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~-----g~qvLvfl 205 (505)
T TIGR00595 133 VLGSATPSLESYHNAKQ--KAYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLAA-----GEQSILFL 205 (505)
T ss_pred EEEeCCCCHHHHHHHhc--CCeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHHc-----CCcEEEEE
Confidence 99999987665544432 122222222111111122222222222211 13455555544322 67899998
Q ss_pred Cchhh------------------------------------------------------------HHHHHHHHHHC--CC
Q 013173 412 ETKKG------------------------------------------------------------ADALEHWLYMN--GF 429 (448)
Q Consensus 412 ~t~~~------------------------------------------------------------a~~l~~~L~~~--g~ 429 (448)
|++.. ++.+++.|... +.
T Consensus 206 nrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~ 285 (505)
T TIGR00595 206 NRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGA 285 (505)
T ss_pred eCCcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCC
Confidence 87653 58889999877 78
Q ss_pred CeEEecCCCCHHHH
Q 013173 430 PATTIHGDRTQQRT 443 (448)
Q Consensus 430 ~~~~iHg~~~q~eR 443 (448)
++..+|+|+++.++
T Consensus 286 ~v~~~d~d~~~~~~ 299 (505)
T TIGR00595 286 RIARIDSDTTSRKG 299 (505)
T ss_pred cEEEEecccccCcc
Confidence 99999999988765
No 94
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.75 E-value=5.5e-17 Score=169.60 Aligned_cols=152 Identities=22% Similarity=0.257 Sum_probs=125.9
Q ss_pred CCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013173 167 KPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF 246 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~ 246 (448)
.|-.+|++||-++..|..|+|.|+|.+|||+++-.+|-..- ....++|+.+|-++|.+|-+..++.-
T Consensus 297 elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq-------------~h~TR~iYTSPIKALSNQKfRDFk~t 363 (1248)
T KOG0947|consen 297 ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQ-------------KHMTRTIYTSPIKALSNQKFRDFKET 363 (1248)
T ss_pred CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHH-------------hhccceEecchhhhhccchHHHHHHh
Confidence 68899999999999999999999999999998765543221 12346999999999999999999874
Q ss_pred cccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcccccCCCHHHHHHHHHHcC
Q 013173 247 SYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMD 326 (448)
Q Consensus 247 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~ 326 (448)
... +.+++|+..+. ....+||.|.+.|.++|-++.--+.++.+||+||+|.+-|......+++++-.|
T Consensus 364 F~D----vgLlTGDvqin-------PeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMl- 431 (1248)
T KOG0947|consen 364 FGD----VGLLTGDVQIN-------PEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIML- 431 (1248)
T ss_pred ccc----cceeecceeeC-------CCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeec-
Confidence 432 22677776543 336899999999999998877668999999999999999887777788888888
Q ss_pred CCCCCCcEEEEEeccCchHH
Q 013173 327 MPPPGMRQTMLFSATFPKEI 346 (448)
Q Consensus 327 ~~~~~~~q~i~~SAT~~~~v 346 (448)
|.++++|++|||.|+..
T Consensus 432 ---P~HV~~IlLSATVPN~~ 448 (1248)
T KOG0947|consen 432 ---PRHVNFILLSATVPNTL 448 (1248)
T ss_pred ---cccceEEEEeccCCChH
Confidence 89999999999998664
No 95
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.74 E-value=4.8e-16 Score=159.99 Aligned_cols=259 Identities=17% Similarity=0.205 Sum_probs=181.3
Q ss_pred CCHHHHHHH-HHCCCCCCCHHHHhHHhhHhCC------CCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCc
Q 013173 152 LGEALNLNI-RRCKYVKPTPVQRHAIPISIGG------RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYP 224 (448)
Q Consensus 152 L~~~l~~~l-~~~~~~~pt~~Q~~~i~~i~~g------~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~ 224 (448)
....+.+.+ ..+.| ++|..|+.++..|... .+=++++.-|||||++.++.++..+-. +.
T Consensus 247 ~~~~l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~-------------G~ 312 (677)
T COG1200 247 ANGELLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA-------------GY 312 (677)
T ss_pred ccHHHHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc-------------CC
Confidence 344444444 45555 8999999999988754 356899999999999999999987743 45
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHH---HHHhcC-ccEEEeChHHHHHHHhcccccCCCeeE
Q 013173 225 LALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQL---RELERG-VDILVATPGRLVDLLERARVSLQMIRY 300 (448)
Q Consensus 225 ~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~---~~l~~~-~~Ilv~Tp~~l~~~l~~~~~~l~~v~~ 300 (448)
++..++||--||.|-++.+.++....++++..++|........ ..+..| .+|+|+|- .|-+..+.++++.+
T Consensus 313 Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTH-----ALiQd~V~F~~LgL 387 (677)
T COG1200 313 QAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTH-----ALIQDKVEFHNLGL 387 (677)
T ss_pred eeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcc-----hhhhcceeecceeE
Confidence 6999999999999999999999999999999999887755443 344455 89999994 44556778999999
Q ss_pred EEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEecccccccCceeEEEEEec
Q 013173 301 LALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVH 380 (448)
Q Consensus 301 lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~ 380 (448)
+|+||=||+.- .=+..+...... ..-+++||||.=+.... -..+.|...-.++....-...|.....
T Consensus 388 VIiDEQHRFGV-----~QR~~L~~KG~~---~Ph~LvMTATPIPRTLA--lt~fgDldvS~IdElP~GRkpI~T~~i--- 454 (677)
T COG1200 388 VIIDEQHRFGV-----HQRLALREKGEQ---NPHVLVMTATPIPRTLA--LTAFGDLDVSIIDELPPGRKPITTVVI--- 454 (677)
T ss_pred EEEeccccccH-----HHHHHHHHhCCC---CCcEEEEeCCCchHHHH--HHHhccccchhhccCCCCCCceEEEEe---
Confidence 99999998633 233333333210 23489999997554333 233333222222222222223333222
Q ss_pred ccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchh--------hHHHHHHHHHHC--CCCeEEecCCCCHHHHHHhh
Q 013173 381 ESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKK--------GADALEHWLYMN--GFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 381 ~~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~--------~a~~l~~~L~~~--g~~~~~iHg~~~q~eR~~~l 447 (448)
..++...+++.+...... +.++.|.|+-++ .|+.+++.|... ++++..+||.|+..|++++|
T Consensus 455 ~~~~~~~v~e~i~~ei~~-----GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM 526 (677)
T COG1200 455 PHERRPEVYERIREEIAK-----GRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVM 526 (677)
T ss_pred ccccHHHHHHHHHHHHHc-----CCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHH
Confidence 234566666666655432 788999998765 456777777643 67799999999999999987
No 96
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.72 E-value=4.5e-17 Score=166.54 Aligned_cols=232 Identities=21% Similarity=0.203 Sum_probs=164.9
Q ss_pred CCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013173 167 KPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF 246 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~ 246 (448)
++-|+|..+|..+-++..++|+|.|.+|||.++-.+|-+.+... -++|+.+|-++|.+|-++++..-
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~k-------------QRVIYTSPIKALSNQKYREl~~E 195 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLREK-------------QRVIYTSPIKALSNQKYRELLEE 195 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHhc-------------CeEEeeChhhhhcchhHHHHHHH
Confidence 67899999999999999999999999999999877766655332 25999999999999999998763
Q ss_pred cccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcccccCCCHHHHHHHHHHcC
Q 013173 247 SYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMD 326 (448)
Q Consensus 247 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~ 326 (448)
.. .|.+++|...+.. ....||.|.+.|..+|-++.--+..|.|||+||+|.|-|....-.+++.+-.+
T Consensus 196 F~----DVGLMTGDVTInP-------~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIll- 263 (1041)
T KOG0948|consen 196 FK----DVGLMTGDVTINP-------DASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILL- 263 (1041)
T ss_pred hc----ccceeecceeeCC-------CCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEec-
Confidence 32 3566677765432 36799999999999999888779999999999999998865444455555555
Q ss_pred CCCCCCcEEEEEeccCchHHH--HHHHhhhcCcEEEEecccccccCceeEEEE----------Eeccc-----chHHHHH
Q 013173 327 MPPPGMRQTMLFSATFPKEIQ--RLASDFLANYIFLAVGRVGSSTDLIVQRVE----------FVHES-----DKRSHLM 389 (448)
Q Consensus 327 ~~~~~~~q~i~~SAT~~~~v~--~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~----------~~~~~-----~k~~~L~ 389 (448)
|++.+.+++|||+|+..+ +++......|+++..-.. . +...|+|. .+++. +.+...+
T Consensus 264 ---P~~vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdy-R--PTPLQHyifP~ggdGlylvVDek~~FrednF~~am 337 (1041)
T KOG0948|consen 264 ---PDNVRFVFLSATIPNARQFAEWICHIHKQPCHVVYTDY-R--PTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAM 337 (1041)
T ss_pred ---cccceEEEEeccCCCHHHHHHHHHHHhcCCceEEeecC-C--CCcceeeeecCCCCeeEEEEecccccchHHHHHHH
Confidence 788899999999998754 455555567776543211 1 11222222 23322 2233333
Q ss_pred HHHHHHHhcC---C----------------------------CCCCCcEEEEeCchhhHHHHHHHHHHCCC
Q 013173 390 DLLHAQVANG---V----------------------------HGKQALTLVFVETKKGADALEHWLYMNGF 429 (448)
Q Consensus 390 ~ll~~~~~~~---~----------------------------~~~~~~tlVF~~t~~~a~~l~~~L~~~g~ 429 (448)
.-|....... . ..+..++|||+-++++|+.+|-.|.+..+
T Consensus 338 ~~l~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldf 408 (1041)
T KOG0948|consen 338 SVLRKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDF 408 (1041)
T ss_pred HHhhccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcC
Confidence 3332211111 0 01234799999999999999998876644
No 97
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.71 E-value=7e-16 Score=163.15 Aligned_cols=252 Identities=22% Similarity=0.293 Sum_probs=172.7
Q ss_pred HHHHHHHCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHH
Q 013173 156 LNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTREL 235 (448)
Q Consensus 156 l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL 235 (448)
+.+.+++....+|+..|+-....++.|+..-+.||||.|||+--++..+ ++. ..+-+++||+||+.|
T Consensus 71 ~~~fF~k~~G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl--~~a-----------~kgkr~yii~PT~~L 137 (1187)
T COG1110 71 FEEFFKKATGFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSL--YLA-----------KKGKRVYIIVPTTTL 137 (1187)
T ss_pred HHHHHHHhhCCCchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHH--HHH-----------hcCCeEEEEecCHHH
Confidence 3444555545599999999999999999999999999999985544433 221 122469999999999
Q ss_pred HHHHHHHHHHhcccCC-cEEEE-EECCCChHHH---HHHHhc-CccEEEeChHHHHHHHhcccccCCCeeEEEEcCCccc
Q 013173 236 SSQIHVEAKKFSYQTG-VKVVV-AYGGAPINQQ---LRELER-GVDILVATPGRLVDLLERARVSLQMIRYLALDEADRM 309 (448)
Q Consensus 236 ~~qi~~~~~~~~~~~~-~~~~~-~~gg~~~~~~---~~~l~~-~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~l 309 (448)
+.|+++.+++|+...+ .++.+ .++..+..+. ...+.+ ..||+|+|..-|...++.-. --+++++++|++|.+
T Consensus 138 v~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~--~~kFdfifVDDVDA~ 215 (1187)
T COG1110 138 VRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELS--KLKFDFIFVDDVDAI 215 (1187)
T ss_pred HHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhc--ccCCCEEEEccHHHH
Confidence 9999999999985544 44444 4444444332 334444 48999999998876665321 135788999999988
Q ss_pred ccC-----------CCHHH-------HHHHHHHcC--------------------CCCCCCcEEEEEeccCchHH-H-HH
Q 013173 310 LDM-----------GFEPQ-------IRKIVQQMD--------------------MPPPGMRQTMLFSATFPKEI-Q-RL 349 (448)
Q Consensus 310 l~~-----------gf~~~-------i~~i~~~l~--------------------~~~~~~~q~i~~SAT~~~~v-~-~l 349 (448)
|.. ||.+. +..+...+. ....+.-++++.|||..+.- + .+
T Consensus 216 LkaskNvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~L 295 (1187)
T COG1110 216 LKASKNVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKL 295 (1187)
T ss_pred HhccccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHH
Confidence 753 34332 111111111 01123468999999984432 2 23
Q ss_pred HHhhhcCcEEEEecccccccCceeEEEEEecccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCc---hhhHHHHHHHHHH
Q 013173 350 ASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVET---KKGADALEHWLYM 426 (448)
Q Consensus 350 ~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t---~~~a~~l~~~L~~ 426 (448)
.+ +..-+.++.......||...|... .-...+.++++.. +.-.||||++ ++.|++|+++|+.
T Consensus 296 fR----eLlgFevG~~~~~LRNIvD~y~~~---~~~e~~~elvk~l--------G~GgLIfV~~d~G~e~aeel~e~Lr~ 360 (1187)
T COG1110 296 FR----ELLGFEVGSGGEGLRNIVDIYVES---ESLEKVVELVKKL--------GDGGLIFVPIDYGREKAEELAEYLRS 360 (1187)
T ss_pred HH----HHhCCccCccchhhhheeeeeccC---ccHHHHHHHHHHh--------CCCeEEEEEcHHhHHHHHHHHHHHHh
Confidence 33 333445566666677777765544 4556677777766 4458999999 9999999999999
Q ss_pred CCCCeEEecCC
Q 013173 427 NGFPATTIHGD 437 (448)
Q Consensus 427 ~g~~~~~iHg~ 437 (448)
+|+++..+|+.
T Consensus 361 ~Gi~a~~~~a~ 371 (1187)
T COG1110 361 HGINAELIHAE 371 (1187)
T ss_pred cCceEEEeecc
Confidence 99999999985
No 98
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.70 E-value=3.8e-16 Score=133.55 Aligned_cols=144 Identities=44% Similarity=0.574 Sum_probs=110.7
Q ss_pred CCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCC
Q 013173 183 RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAP 262 (448)
Q Consensus 183 ~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~ 262 (448)
+++++.++||+|||..++..+...+... ...++||++|++.|+.|..+.+..+... +..+..+.+...
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~-----------~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~ 68 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSL-----------KGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTS 68 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcc-----------cCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcc
Confidence 4689999999999999888777655431 1245999999999999999999887654 677888888777
Q ss_pred hHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccC
Q 013173 263 INQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATF 342 (448)
Q Consensus 263 ~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~ 342 (448)
............+|+|+|++.+...+..........+++||||+|.+....+........... ....+++++|||+
T Consensus 69 ~~~~~~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~----~~~~~~i~~saTp 144 (144)
T cd00046 69 IKQQEKLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKL----PKDRQVLLLSATP 144 (144)
T ss_pred hhHHHHHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhC----CccceEEEEeccC
Confidence 666665566679999999999998887766556788999999999997765444321122222 4456799999995
No 99
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.69 E-value=9.9e-16 Score=171.01 Aligned_cols=161 Identities=17% Similarity=0.218 Sum_probs=107.1
Q ss_pred CCCCHHHHhHHhhHh----C-CCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHH
Q 013173 166 VKPTPVQRHAIPISI----G-GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIH 240 (448)
Q Consensus 166 ~~pt~~Q~~~i~~i~----~-g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~ 240 (448)
..++++|.+||..+. . .+..+++++||||||.+++ .++..+++.. ...++|||+|+++|+.|..
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai-~li~~L~~~~----------~~~rVLfLvDR~~L~~Qa~ 480 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAI-ALMYRLLKAK----------RFRRILFLVDRSALGEQAE 480 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHH-HHHHHHHhcC----------ccCeEEEEecHHHHHHHHH
Confidence 358999999998765 2 3679999999999998743 4455554432 1246999999999999999
Q ss_pred HHHHHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcc-----cccCCCeeEEEEcCCccccc----
Q 013173 241 VEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA-----RVSLQMIRYLALDEADRMLD---- 311 (448)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~-----~~~l~~v~~lVlDEah~ll~---- 311 (448)
+.++.+.......+..+++...... ........|+|+|...|...+... ...+..+++||+||||+-..
T Consensus 481 ~~F~~~~~~~~~~~~~i~~i~~L~~--~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~ 558 (1123)
T PRK11448 481 DAFKDTKIEGDQTFASIYDIKGLED--KFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKE 558 (1123)
T ss_pred HHHHhcccccccchhhhhchhhhhh--hcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccc
Confidence 9999874322211111222111111 111234689999999998765321 24567889999999999531
Q ss_pred -----CC------CHHHHHHHHHHcCCCCCCCcEEEEEeccCchH
Q 013173 312 -----MG------FEPQIRKIVQQMDMPPPGMRQTMLFSATFPKE 345 (448)
Q Consensus 312 -----~g------f~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~ 345 (448)
.+ +...++.++.+++ ...|+||||....
T Consensus 559 ~~~~~~~~~~~~~~~~~yr~iL~yFd------A~~IGLTATP~r~ 597 (1123)
T PRK11448 559 MSEGELQFRDQLDYVSKYRRVLDYFD------AVKIGLTATPALH 597 (1123)
T ss_pred cccchhccchhhhHHHHHHHHHhhcC------ccEEEEecCCccc
Confidence 11 2356777887652 2379999998643
No 100
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.68 E-value=8.7e-16 Score=166.68 Aligned_cols=263 Identities=18% Similarity=0.121 Sum_probs=164.3
Q ss_pred CCHHHHhHHhhHhCC---C-CeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q 013173 168 PTPVQRHAIPISIGG---R-DLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEA 243 (448)
Q Consensus 168 pt~~Q~~~i~~i~~g---~-d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~ 243 (448)
..+.|..++..++.. . .+++.||||+|||.+.+++++..+... .....+++++.|++.++.++++.+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~---------~~~~~r~i~vlP~~t~ie~~~~r~ 266 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK---------IKLKSRVIYVLPFRTIIEDMYRRA 266 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc---------ccccceEEEEccHHHHHHHHHHHH
Confidence 478899999877643 4 788999999999999999988766442 124567999999999999999999
Q ss_pred HHhcccCCcEEEEEECCCChHHHHHH-----Hh---------cCccEEEeChHHHHHHHhc-cccc-C--CCeeEEEEcC
Q 013173 244 KKFSYQTGVKVVVAYGGAPINQQLRE-----LE---------RGVDILVATPGRLVDLLER-ARVS-L--QMIRYLALDE 305 (448)
Q Consensus 244 ~~~~~~~~~~~~~~~gg~~~~~~~~~-----l~---------~~~~Ilv~Tp~~l~~~l~~-~~~~-l--~~v~~lVlDE 305 (448)
+.+.....+.....++.......... .. ....++++||-.+...... .... + =.-+.+||||
T Consensus 267 ~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE 346 (733)
T COG1203 267 KEIFGLFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDE 346 (733)
T ss_pred HhhhcccccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhcc
Confidence 98765444333322332221111110 00 0134556666555542211 1111 1 1236799999
Q ss_pred CcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEeccccc-ccCceeE-EEEEecccc
Q 013173 306 ADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGS-STDLIVQ-RVEFVHESD 383 (448)
Q Consensus 306 ah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~-~~~~i~q-~~~~~~~~~ 383 (448)
+|.+-+......+..++..+. .....+|++|||+|+...+.+...+.+...+....... ..+.... ....+...+
T Consensus 347 ~h~~~~~~~~~~l~~~i~~l~---~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 423 (733)
T COG1203 347 VHLYADETMLAALLALLEALA---EAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVED 423 (733)
T ss_pred HHhhcccchHHHHHHHHHHHH---hCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhh
Confidence 998877633444555555553 23456999999999999999988877654443321100 0000000 000011011
Q ss_pred hH-HHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCCHHHHHHhh
Q 013173 384 KR-SHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 384 k~-~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
.. ..+........ .++.+++|.|||+..|++++..|+..+.++..|||.++..+|.+.+
T Consensus 424 ~~~~~~~~~~~~~~-----~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke 483 (733)
T COG1203 424 GPQEELIELISEEV-----KEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKE 483 (733)
T ss_pred hhhHhhhhcchhhh-----ccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHH
Confidence 10 01112222111 2378899999999999999999999887899999999999998764
No 101
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.64 E-value=1.4e-15 Score=160.21 Aligned_cols=188 Identities=18% Similarity=0.221 Sum_probs=140.6
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHhHH--hhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEE
Q 013173 152 LGEALNLNIRRCKYVKPTPVQRHAI--PISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALIL 229 (448)
Q Consensus 152 L~~~l~~~l~~~~~~~pt~~Q~~~i--~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil 229 (448)
++.......+..|..++..+|.+++ |.++.++|++..+||+.|||++.-+-++..++..+ -.++.+
T Consensus 208 ~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~r------------r~~lli 275 (1008)
T KOG0950|consen 208 PTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRR------------RNVLLI 275 (1008)
T ss_pred chHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHh------------hceeEe
Confidence 3333444455668888999999998 67889999999999999999999998888776543 138999
Q ss_pred cCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcc--cccCCCeeEEEEcCCc
Q 013173 230 APTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA--RVSLQMIRYLALDEAD 307 (448)
Q Consensus 230 ~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~--~~~l~~v~~lVlDEah 307 (448)
.|-...+..-...+..|....|+.+...+|..+..... +..+|.|||-++-..++..- .-.+..+.+|||||.|
T Consensus 276 lp~vsiv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~~----k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElh 351 (1008)
T KOG0950|consen 276 LPYVSIVQEKISALSPFSIDLGFPVEEYAGRFPPEKRR----KRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELH 351 (1008)
T ss_pred cceeehhHHHHhhhhhhccccCCcchhhcccCCCCCcc----cceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeee
Confidence 99999998888888999888999998877665543322 23689999999876655331 1236778999999999
Q ss_pred ccccCCCHHHHHHHHHHcCCCC-CCCcEEEEEeccCchHHHHHHHhhhcCc
Q 013173 308 RMLDMGFEPQIRKIVQQMDMPP-PGMRQTMLFSATFPKEIQRLASDFLANY 357 (448)
Q Consensus 308 ~ll~~gf~~~i~~i~~~l~~~~-~~~~q~i~~SAT~~~~v~~l~~~~l~~~ 357 (448)
.+.+.+....++.++..+-... ....|+|.||||+++. .++.++++..
T Consensus 352 mi~d~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~--~lL~~~L~A~ 400 (1008)
T KOG0950|consen 352 MIGDKGRGAILELLLAKILYENLETSVQIIGMSATIPNN--SLLQDWLDAF 400 (1008)
T ss_pred eeeccccchHHHHHHHHHHHhccccceeEeeeecccCCh--HHHHHHhhhh
Confidence 9999988787777776652211 2237899999999754 3444555433
No 102
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.64 E-value=1.4e-14 Score=158.76 Aligned_cols=157 Identities=17% Similarity=0.115 Sum_probs=93.1
Q ss_pred CCCHHHHhHHhhHhCC--CCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q 013173 167 KPTPVQRHAIPISIGG--RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAK 244 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~~g--~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~ 244 (448)
.|.|+|.+++..++.. ..+++.-.+|.|||....+.+-..+.... .-++|||||+ .|+.|...++.
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g~-----------~~rvLIVvP~-sL~~QW~~El~ 219 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTGR-----------AERVLILVPE-TLQHQWLVEML 219 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcCC-----------CCcEEEEcCH-HHHHHHHHHHH
Confidence 4899999998776543 35889999999999987665443333221 1249999998 78899888885
Q ss_pred HhcccCCcEEEEEECCCChHHHHH---HHhcCccEEEeChHHHHHHHhc-ccccCCCeeEEEEcCCcccccC-CCHHHHH
Q 013173 245 KFSYQTGVKVVVAYGGAPINQQLR---ELERGVDILVATPGRLVDLLER-ARVSLQMIRYLALDEADRMLDM-GFEPQIR 319 (448)
Q Consensus 245 ~~~~~~~~~~~~~~gg~~~~~~~~---~l~~~~~Ilv~Tp~~l~~~l~~-~~~~l~~v~~lVlDEah~ll~~-gf~~~i~ 319 (448)
+.. ++...++.++ ....... ..-...+++|+|.+.|...-.. ..+.-...++|||||||++-.. +-.....
T Consensus 220 ~kF---~l~~~i~~~~-~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y 295 (956)
T PRK04914 220 RRF---NLRFSLFDEE-RYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREY 295 (956)
T ss_pred HHh---CCCeEEEcCc-chhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHH
Confidence 421 2344333322 2111000 0011358999999877642110 1122346789999999998521 1111112
Q ss_pred HHHHHcCCCCCCCcEEEEEeccC
Q 013173 320 KIVQQMDMPPPGMRQTMLFSATF 342 (448)
Q Consensus 320 ~i~~~l~~~~~~~~q~i~~SAT~ 342 (448)
+.+..+. .....++++|||.
T Consensus 296 ~~v~~La---~~~~~~LLLTATP 315 (956)
T PRK04914 296 QVVEQLA---EVIPGVLLLTATP 315 (956)
T ss_pred HHHHHHh---hccCCEEEEEcCc
Confidence 3333331 1123479999994
No 103
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.63 E-value=7.3e-14 Score=132.24 Aligned_cols=232 Identities=19% Similarity=0.211 Sum_probs=162.1
Q ss_pred CCCHHHHhHHhhH----hCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 013173 167 KPTPVQRHAIPIS----IGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVE 242 (448)
Q Consensus 167 ~pt~~Q~~~i~~i----~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~ 242 (448)
++||.|+.+-..+ .+.+++++.|-||+|||.. +++.++..++. +.++.|.+|....|..++..
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEM-if~~i~~al~~------------G~~vciASPRvDVclEl~~R 163 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEM-IFQGIEQALNQ------------GGRVCIASPRVDVCLELYPR 163 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhh-hHHHHHHHHhc------------CCeEEEecCcccchHHHHHH
Confidence 6899999886654 3678999999999999997 45566655543 35688999999999999999
Q ss_pred HHHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcccccCCCHHHHHHHH
Q 013173 243 AKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIV 322 (448)
Q Consensus 243 ~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~ 322 (448)
++.-. .+..+.++||+...... ..++|||...|+.+- +.++++||||+|.+--.. .+.+...+
T Consensus 164 lk~aF--~~~~I~~Lyg~S~~~fr-------~plvVaTtHQLlrFk-------~aFD~liIDEVDAFP~~~-d~~L~~Av 226 (441)
T COG4098 164 LKQAF--SNCDIDLLYGDSDSYFR-------APLVVATTHQLLRFK-------QAFDLLIIDEVDAFPFSD-DQSLQYAV 226 (441)
T ss_pred HHHhh--ccCCeeeEecCCchhcc-------ccEEEEehHHHHHHH-------hhccEEEEeccccccccC-CHHHHHHH
Confidence 98743 34678889988763322 579999999988763 346789999999873211 13444444
Q ss_pred HHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEecccccccCceeEEEEEecccchH-------HHHHHHHHHH
Q 013173 323 QQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKR-------SHLMDLLHAQ 395 (448)
Q Consensus 323 ~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~~k~-------~~L~~ll~~~ 395 (448)
+.-. +..--+|.+|||.+++++.-+.. .+...+.+.......+.+.-.+.+...-.|. ..|...|..+
T Consensus 227 ~~ar---k~~g~~IylTATp~k~l~r~~~~--g~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq 301 (441)
T COG4098 227 KKAR---KKEGATIYLTATPTKKLERKILK--GNLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQ 301 (441)
T ss_pred HHhh---cccCceEEEecCChHHHHHHhhh--CCeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHH
Confidence 4332 33455899999999888764433 2344444444444444555556666544332 2667777776
Q ss_pred HhcCCCCCCCcEEEEeCchhhHHHHHHHHHHC-C-CCeEEecCCC
Q 013173 396 VANGVHGKQALTLVFVETKKGADALEHWLYMN-G-FPATTIHGDR 438 (448)
Q Consensus 396 ~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~-g-~~~~~iHg~~ 438 (448)
... +.+++||+++++..++++..|... . ....++|+.-
T Consensus 302 ~~~-----~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d 341 (441)
T COG4098 302 RKT-----GRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSED 341 (441)
T ss_pred Hhc-----CCcEEEEecchHHHHHHHHHHHhhCCccceeeeeccC
Confidence 543 789999999999999999999544 3 3457888753
No 104
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.59 E-value=1.1e-13 Score=147.65 Aligned_cols=128 Identities=22% Similarity=0.254 Sum_probs=101.3
Q ss_pred CCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013173 166 VKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK 245 (448)
Q Consensus 166 ~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~ 245 (448)
..|+++|.-..-.+..|+ |+...||+|||++..+|++...+.. ..+-|++||--||.|=++.+..
T Consensus 79 ~~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~G-------------~~v~vvT~neyLA~Rd~e~~~~ 143 (796)
T PRK12906 79 LRPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALTG-------------KGVHVVTVNEYLSSRDATEMGE 143 (796)
T ss_pred CCCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHcC-------------CCeEEEeccHHHHHhhHHHHHH
Confidence 478899988876676776 9999999999999999988766543 2489999999999999999999
Q ss_pred hcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHH-HHHHhccc------ccCCCeeEEEEcCCcccc
Q 013173 246 FSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRL-VDLLERAR------VSLQMIRYLALDEADRML 310 (448)
Q Consensus 246 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l-~~~l~~~~------~~l~~v~~lVlDEah~ll 310 (448)
+....|+++.++.++.+..+... ...|||+++|..-| .|+|.... .....+.+.||||+|.+|
T Consensus 144 ~~~~LGl~vg~i~~~~~~~~r~~--~y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiL 213 (796)
T PRK12906 144 LYRWLGLTVGLNLNSMSPDEKRA--AYNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSIL 213 (796)
T ss_pred HHHhcCCeEEEeCCCCCHHHHHH--HhcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchhee
Confidence 99999999999988776554333 23589999999887 34443321 123567899999999875
No 105
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.58 E-value=2.2e-13 Score=147.84 Aligned_cols=258 Identities=17% Similarity=0.115 Sum_probs=181.3
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHhHHhhHhC----C--CCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCce
Q 013173 152 LGEALNLNIRRCKYVKPTPVQRHAIPISIG----G--RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPL 225 (448)
Q Consensus 152 L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~----g--~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~ 225 (448)
.+.+..+.+...--..-||-|..||..+.. + .|=++|+.-|-|||.+++=+++..++. +.+
T Consensus 579 ~d~~~q~~F~~~FPyeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~-------------GKQ 645 (1139)
T COG1197 579 PDTEWQEEFEASFPYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMD-------------GKQ 645 (1139)
T ss_pred CChHHHHHHHhcCCCcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcC-------------CCe
Confidence 344444444432223578899999998764 3 488999999999999988877766643 356
Q ss_pred EEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHH---HHhcC-ccEEEeChHHHHHHHhcccccCCCeeEE
Q 013173 226 ALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLR---ELERG-VDILVATPGRLVDLLERARVSLQMIRYL 301 (448)
Q Consensus 226 ~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~~~-~~Ilv~Tp~~l~~~l~~~~~~l~~v~~l 301 (448)
|.||+||.-||+|-++.++.-...+.+++..+.-=.+..++.. .+..| .||||+|- -|-...+.++++.+|
T Consensus 646 VAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTH-----rLL~kdv~FkdLGLl 720 (1139)
T COG1197 646 VAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTH-----RLLSKDVKFKDLGLL 720 (1139)
T ss_pred EEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEech-----HhhCCCcEEecCCeE
Confidence 9999999999999999999877788899988866555555543 44444 89999994 233456779999999
Q ss_pred EEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEecccccccCceeEEEEEecc
Q 013173 302 ALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHE 381 (448)
Q Consensus 302 VlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~ 381 (448)
||||=|++.- ...+. ++.+ +.++-++-+|||.=+....+...-+++.-.+.....+ .-.+..++.-.++
T Consensus 721 IIDEEqRFGV-k~KEk----LK~L----r~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~--R~pV~T~V~~~d~ 789 (1139)
T COG1197 721 IIDEEQRFGV-KHKEK----LKEL----RANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPED--RLPVKTFVSEYDD 789 (1139)
T ss_pred EEechhhcCc-cHHHH----HHHH----hccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCC--CcceEEEEecCCh
Confidence 9999998632 12333 3444 4455699999998776677776666666555442211 1122222222222
Q ss_pred cchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHC--CCCeEEecCCCCHHHHHHhh
Q 013173 382 SDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN--GFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 382 ~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~--g~~~~~iHg~~~q~eR~~~l 447 (448)
.--.++++.-+.. ++++-..+|.++..+.+++.|+.. ...+...||.|+..|=+++|
T Consensus 790 ~~ireAI~REl~R---------gGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM 848 (1139)
T COG1197 790 LLIREAILRELLR---------GGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVM 848 (1139)
T ss_pred HHHHHHHHHHHhc---------CCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHH
Confidence 2222233322222 788999999999999999999987 56789999999999988876
No 106
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.57 E-value=3.1e-13 Score=149.56 Aligned_cols=96 Identities=20% Similarity=0.196 Sum_probs=73.7
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHhHHh----hHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEE
Q 013173 152 LGEALNLNIRRCKYVKPTPVQRHAIP----ISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLAL 227 (448)
Q Consensus 152 L~~~l~~~l~~~~~~~pt~~Q~~~i~----~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~l 227 (448)
+++.+.+.+...||. ++|.|.+.+. .+..++++++.||||+|||++|++|++.... . +.++|
T Consensus 231 ~~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~-~------------~~~vv 296 (850)
T TIGR01407 231 LSSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI-T------------EKPVV 296 (850)
T ss_pred ccHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc-C------------CCeEE
Confidence 455777788778885 8999998665 5557899999999999999999999987553 1 12599
Q ss_pred EEcCcHHHHHHHHH-HHHHhcccCC--cEEEEEECCC
Q 013173 228 ILAPTRELSSQIHV-EAKKFSYQTG--VKVVVAYGGA 261 (448)
Q Consensus 228 il~PtreL~~qi~~-~~~~~~~~~~--~~~~~~~gg~ 261 (448)
|.+||++|..|+.. .+..+....+ ++++++.|+.
T Consensus 297 i~t~t~~Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~ 333 (850)
T TIGR01407 297 ISTNTKVLQSQLLEKDIPLLNEILNFKINAALIKGKS 333 (850)
T ss_pred EEeCcHHHHHHHHHHHHHHHHHHcCCCceEEEEEcch
Confidence 99999999999865 5665554333 6777666653
No 107
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.56 E-value=2.5e-14 Score=128.93 Aligned_cols=152 Identities=24% Similarity=0.209 Sum_probs=100.3
Q ss_pred CCCHHHHhHHhhHhC-------CCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHH
Q 013173 167 KPTPVQRHAIPISIG-------GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQI 239 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~~-------g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi 239 (448)
+++++|.+++..+.. .+++++.++||||||.+++..+.. +.. ++||++|+..|+.|.
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~-l~~---------------~~l~~~p~~~l~~Q~ 66 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILE-LAR---------------KVLIVAPNISLLEQW 66 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHH-HHC---------------EEEEEESSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhc-ccc---------------ceeEecCHHHHHHHH
Confidence 589999999988773 588999999999999998754443 322 499999999999999
Q ss_pred HHHHHHhcccCCcEE----------E-EEECCCChHHHHHHHhcCccEEEeChHHHHHHHhccc-----------ccCCC
Q 013173 240 HVEAKKFSYQTGVKV----------V-VAYGGAPINQQLRELERGVDILVATPGRLVDLLERAR-----------VSLQM 297 (448)
Q Consensus 240 ~~~~~~~~~~~~~~~----------~-~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~-----------~~l~~ 297 (448)
.+.+..+........ . ...................++++.|...|........ .....
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 146 (184)
T PF04851_consen 67 YDEFDDFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNK 146 (184)
T ss_dssp HHHHHHHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGS
T ss_pred HHHHHHhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhcccc
Confidence 999976643211110 0 0111111112222233457899999999988765321 23456
Q ss_pred eeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCc
Q 013173 298 IRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFP 343 (448)
Q Consensus 298 v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~ 343 (448)
..+||+||||++.... .+..++. . ....+|+||||+.
T Consensus 147 ~~~vI~DEaH~~~~~~---~~~~i~~-~-----~~~~~l~lTATp~ 183 (184)
T PF04851_consen 147 FDLVIIDEAHHYPSDS---SYREIIE-F-----KAAFILGLTATPF 183 (184)
T ss_dssp ESEEEEETGGCTHHHH---HHHHHHH-S-----SCCEEEEEESS-S
T ss_pred CCEEEEehhhhcCCHH---HHHHHHc-C-----CCCeEEEEEeCcc
Confidence 7899999999886522 1555555 2 2345899999975
No 108
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.53 E-value=8.1e-13 Score=142.23 Aligned_cols=240 Identities=14% Similarity=0.161 Sum_probs=152.2
Q ss_pred hHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH-hcccCCc
Q 013173 174 HAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK-FSYQTGV 252 (448)
Q Consensus 174 ~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~-~~~~~~~ 252 (448)
+.+..+.+.+-++++++||||||+..-..+++... .....+.|+.|.|--|..+++.+.. +....|-
T Consensus 57 ~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~------------~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~ 124 (845)
T COG1643 57 EILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL------------GIAGKIGCTQPRRLAARSVAERVAEELGEKLGE 124 (845)
T ss_pred HHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc------------ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCc
Confidence 33445667788999999999999964433333221 2234588889999888888777755 3333343
Q ss_pred EEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcccc-cCCCH-HHHHHHHHHcCCCCC
Q 013173 253 KVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRML-DMGFE-PQIRKIVQQMDMPPP 330 (448)
Q Consensus 253 ~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll-~~gf~-~~i~~i~~~l~~~~~ 330 (448)
.|..-+-..+ .......|-|.|.|.|+..+..... |+.+++|||||||.-. +..|. -.+..++..+ +
T Consensus 125 ~VGY~iRfe~------~~s~~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~r----r 193 (845)
T COG1643 125 TVGYSIRFES------KVSPRTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHERSLNTDILLGLLKDLLARR----R 193 (845)
T ss_pred eeeEEEEeec------cCCCCceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhhhHHHHHHHHHHHHHHhhc----C
Confidence 3332221111 1122467999999999999987765 9999999999999642 22221 1222333333 5
Q ss_pred CCcEEEEEeccCchHHHHHHHhhhcC-cEEEEecccccccCceeEEEEEec-ccc-hHHHHHHHHHHHHhcCCCCCCCcE
Q 013173 331 GMRQTMLFSATFPKEIQRLASDFLAN-YIFLAVGRVGSSTDLIVQRVEFVH-ESD-KRSHLMDLLHAQVANGVHGKQALT 407 (448)
Q Consensus 331 ~~~q~i~~SAT~~~~v~~l~~~~l~~-~~~i~v~~~~~~~~~i~q~~~~~~-~~~-k~~~L~~ll~~~~~~~~~~~~~~t 407 (448)
.+.++|+||||+..+ ++. .|+.+ |++..-+ -.-.+..+|.... ... -...+...+...... ..+.+
T Consensus 194 ~DLKiIimSATld~~--rfs-~~f~~apvi~i~G----R~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~----~~GdI 262 (845)
T COG1643 194 DDLKLIIMSATLDAE--RFS-AYFGNAPVIEIEG----RTYPVEIRYLPEAEADYILLDAIVAAVDIHLRE----GSGSI 262 (845)
T ss_pred CCceEEEEecccCHH--HHH-HHcCCCCEEEecC----CccceEEEecCCCCcchhHHHHHHHHHHHhccC----CCCCE
Confidence 568899999999865 333 34443 4333222 2222333342222 222 122333333332221 26779
Q ss_pred EEEeCchhhHHHHHHHHHH----CCCCeEEecCCCCHHHHHHhh
Q 013173 408 LVFVETKKGADALEHWLYM----NGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 408 lVF~~t~~~a~~l~~~L~~----~g~~~~~iHg~~~q~eR~~~l 447 (448)
|||.+-.++.+.+++.|.. ..+.+..+||.++.+|..+++
T Consensus 263 LvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF 306 (845)
T COG1643 263 LVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVF 306 (845)
T ss_pred EEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhc
Confidence 9999999999999999987 357899999999999988875
No 109
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.52 E-value=1.3e-12 Score=140.32 Aligned_cols=251 Identities=17% Similarity=0.151 Sum_probs=159.5
Q ss_pred CHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh-c
Q 013173 169 TPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF-S 247 (448)
Q Consensus 169 t~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~-~ 247 (448)
...+...+..+.+.+.+++++.||||||+..-..+|+.....+ ..+.++|..|.|-.|..+++++.+= +
T Consensus 175 ~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~----------~~~~IicTQPRRIsAIsvAeRVa~ER~ 244 (924)
T KOG0920|consen 175 YKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG----------AACNIICTQPRRISAISVAERVAKERG 244 (924)
T ss_pred HHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC----------CCCeEEecCCchHHHHHHHHHHHHHhc
Confidence 4556677788889999999999999999987666777665543 4466999999999999999888652 2
Q ss_pred ccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcccc-cCCCHHHHHHHHHHcC
Q 013173 248 YQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRML-DMGFEPQIRKIVQQMD 326 (448)
Q Consensus 248 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll-~~gf~~~i~~i~~~l~ 326 (448)
...+-.|..-..... .......+++||.|.|++.+.... .+..+.++|+||+|.-. +.+|.-.+.+.+...
T Consensus 245 ~~~g~~VGYqvrl~~------~~s~~t~L~fcTtGvLLr~L~~~~-~l~~vthiivDEVHER~i~~DflLi~lk~lL~~- 316 (924)
T KOG0920|consen 245 ESLGEEVGYQVRLES------KRSRETRLLFCTTGVLLRRLQSDP-TLSGVTHIIVDEVHERSINTDFLLILLKDLLPR- 316 (924)
T ss_pred cccCCeeeEEEeeec------ccCCceeEEEecHHHHHHHhccCc-ccccCceeeeeeEEEccCCcccHHHHHHHHhhh-
Confidence 223322222111111 111236799999999999998744 58999999999999763 334443333333333
Q ss_pred CCCCCCcEEEEEeccCchHHHHHHHhhhcC-cEEEEeccccc------------c---cCceeEE------------EEE
Q 013173 327 MPPPGMRQTMLFSATFPKEIQRLASDFLAN-YIFLAVGRVGS------------S---TDLIVQR------------VEF 378 (448)
Q Consensus 327 ~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~-~~~i~v~~~~~------------~---~~~i~q~------------~~~ 378 (448)
.++.++|+||||+..+ +.++|... ++....++... + .....++ +..
T Consensus 317 ---~p~LkvILMSAT~dae---~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (924)
T KOG0920|consen 317 ---NPDLKVILMSATLDAE---LFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKL 390 (924)
T ss_pred ---CCCceEEEeeeecchH---HHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchh
Confidence 4678999999999843 33344333 33222111000 0 0000000 111
Q ss_pred ecccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHC-------CCCeEEecCCCCHHHHHHh
Q 013173 379 VHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN-------GFPATTIHGDRTQQRTSIE 446 (448)
Q Consensus 379 ~~~~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~-------g~~~~~iHg~~~q~eR~~~ 446 (448)
...+.....+.+++...... ...+.+|||-+...+...+.+.|..+ .+-+..+|+.|+..|.+.+
T Consensus 391 ~~~~id~~Li~~li~~I~~~---~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~V 462 (924)
T KOG0920|consen 391 WEPEIDYDLIEDLIEYIDER---EFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAV 462 (924)
T ss_pred ccccccHHHHHHHHHhcccC---CCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHh
Confidence 11222333444444433222 23678999999999999999999653 3668899999999877655
No 110
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.51 E-value=1.4e-12 Score=140.26 Aligned_cols=150 Identities=20% Similarity=0.187 Sum_probs=96.4
Q ss_pred CCHHHHhHHhhHh----C------CCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHH
Q 013173 168 PTPVQRHAIPISI----G------GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSS 237 (448)
Q Consensus 168 pt~~Q~~~i~~i~----~------g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~ 237 (448)
|++.|..++..+. . .+..++..+||||||+..+..+. .++.. ...+++|||+|+.+|..
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~-~l~~~----------~~~~~vl~lvdR~~L~~ 307 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAAR-KALEL----------LKNPKVFFVVDRRELDY 307 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHH-HHHhh----------cCCCeEEEEECcHHHHH
Confidence 6788999987653 2 24689999999999998655443 33321 23467999999999999
Q ss_pred HHHHHHHHhcccCCcEEEEEECCCChHHHHHHHhc-CccEEEeChHHHHHHHhcc--cccCCC-eeEEEEcCCcccccCC
Q 013173 238 QIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELER-GVDILVATPGRLVDLLERA--RVSLQM-IRYLALDEADRMLDMG 313 (448)
Q Consensus 238 qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~-~~~Ilv~Tp~~l~~~l~~~--~~~l~~-v~~lVlDEah~ll~~g 313 (448)
|+.+.+..+.... .....+...-...+.. ...|+|+|.+.|...+... .+.... --+||+||||+....
T Consensus 308 Q~~~~f~~~~~~~------~~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~- 380 (667)
T TIGR00348 308 QLMKEFQSLQKDC------AERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYG- 380 (667)
T ss_pred HHHHHHHhhCCCC------CcccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccch-
Confidence 9999999975310 0111222222233332 3689999999998644321 111111 127999999987542
Q ss_pred CHHHHHHHH-HHcCCCCCCCcEEEEEeccCc
Q 013173 314 FEPQIRKIV-QQMDMPPPGMRQTMLFSATFP 343 (448)
Q Consensus 314 f~~~i~~i~-~~l~~~~~~~~q~i~~SAT~~ 343 (448)
.+...+ ..+ + ....++||||.-
T Consensus 381 ---~~~~~l~~~~----p-~a~~lGfTaTP~ 403 (667)
T TIGR00348 381 ---ELAKNLKKAL----K-NASFFGFTGTPI 403 (667)
T ss_pred ---HHHHHHHhhC----C-CCcEEEEeCCCc
Confidence 233333 344 3 346899999984
No 111
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.48 E-value=1.2e-12 Score=137.00 Aligned_cols=247 Identities=22% Similarity=0.259 Sum_probs=150.8
Q ss_pred CCCHHHHhHHhhHh----CCCC-eeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHH
Q 013173 167 KPTPVQRHAIPISI----GGRD-LMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHV 241 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~----~g~d-~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~ 241 (448)
.|+.+|..||..+. +|++ +|+++.||+|||..+ +.++.+|++.+..+ ++|+|+-++.|+.|.+.
T Consensus 165 ~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTA-iaii~rL~r~~~~K----------RVLFLaDR~~Lv~QA~~ 233 (875)
T COG4096 165 GPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTA-IAIIDRLIKSGWVK----------RVLFLADRNALVDQAYG 233 (875)
T ss_pred cchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeH-HHHHHHHHhcchhh----------eeeEEechHHHHHHHHH
Confidence 48899999997554 4544 999999999999985 56777787765332 49999999999999999
Q ss_pred HHHHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcc-----cccCCCeeEEEEcCCcccccCCCHH
Q 013173 242 EAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA-----RVSLQMIRYLALDEADRMLDMGFEP 316 (448)
Q Consensus 242 ~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~-----~~~l~~v~~lVlDEah~ll~~gf~~ 316 (448)
.+..|.-.. ..+....+... ...+.|.|+|..++...+... ++....++++|+||||+-.- .
T Consensus 234 af~~~~P~~--~~~n~i~~~~~-------~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi~----~ 300 (875)
T COG4096 234 AFEDFLPFG--TKMNKIEDKKG-------DTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGIY----S 300 (875)
T ss_pred HHHHhCCCc--cceeeeecccC-------CcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhHH----h
Confidence 988875321 12222211111 114799999999999887654 35567799999999998543 3
Q ss_pred HHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhh-cCcEE------------------EEe----cccccccCc--
Q 013173 317 QIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFL-ANYIF------------------LAV----GRVGSSTDL-- 371 (448)
Q Consensus 317 ~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l-~~~~~------------------i~v----~~~~~~~~~-- 371 (448)
..+.|+.+++ .- ++++|||+.+.+..--..|. .+|+. +.+ ...+.....
T Consensus 301 ~~~~I~dYFd----A~--~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~s 374 (875)
T COG4096 301 EWSSILDYFD----AA--TQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGS 374 (875)
T ss_pred hhHHHHHHHH----HH--HHhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccc
Confidence 4456777762 21 23449998664433222222 22222 111 111111111
Q ss_pred ---------e---eEEEEEecc------cchHHHHHHHHHHHHhcCCCCC-CCcEEEEeCchhhHHHHHHHHHHC-----
Q 013173 372 ---------I---VQRVEFVHE------SDKRSHLMDLLHAQVANGVHGK-QALTLVFVETKKGADALEHWLYMN----- 427 (448)
Q Consensus 372 ---------i---~q~~~~~~~------~~k~~~L~~ll~~~~~~~~~~~-~~~tlVF~~t~~~a~~l~~~L~~~----- 427 (448)
+ .+.+...+. ....+.+...+.........++ -++|||||.+..+|+.+...|...
T Consensus 375 erek~~g~~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~ 454 (875)
T COG4096 375 EREKLQGEAIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYN 454 (875)
T ss_pred hhhhhhccccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCcccc
Confidence 1 011111110 1122344444444333322222 578999999999999999999765
Q ss_pred CCCeEEecCCCCHHHH
Q 013173 428 GFPATTIHGDRTQQRT 443 (448)
Q Consensus 428 g~~~~~iHg~~~q~eR 443 (448)
+--|..|.|+-.+..+
T Consensus 455 ~~~a~~IT~d~~~~q~ 470 (875)
T COG4096 455 GRYAMKITGDAEQAQA 470 (875)
T ss_pred CceEEEEeccchhhHH
Confidence 2347777777665543
No 112
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.47 E-value=6.3e-12 Score=138.60 Aligned_cols=154 Identities=18% Similarity=0.204 Sum_probs=102.3
Q ss_pred CCCHHHHhHHhhHh----CCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 013173 167 KPTPVQRHAIPISI----GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVE 242 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~----~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~ 242 (448)
++.++|...+..++ ++.+.|++-.+|.|||+..+ .++..+.... .....+|||||. .+..+..++
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaI-alL~~L~~~~---------~~~gp~LIVvP~-SlL~nW~~E 237 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTI-SLLGYLHEYR---------GITGPHMVVAPK-STLGNWMNE 237 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHH-HHHHHHHHhc---------CCCCCEEEEeCh-HHHHHHHHH
Confidence 68899999998764 57889999999999999753 3444443221 111237999996 555778889
Q ss_pred HHHhcccCCcEEEEEECCCChHHHHHH--H-hcCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcccccCCCHHHHH
Q 013173 243 AKKFSYQTGVKVVVAYGGAPINQQLRE--L-ERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIR 319 (448)
Q Consensus 243 ~~~~~~~~~~~~~~~~gg~~~~~~~~~--l-~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~ 319 (448)
+.+++. .++++.++|.......... + ....+|+|+|.+.+..... .+.--...+|||||||++-.. ...+.
T Consensus 238 i~kw~p--~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~--~L~k~~W~~VIvDEAHrIKN~--~Skls 311 (1033)
T PLN03142 238 IRRFCP--VLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKT--ALKRFSWRYIIIDEAHRIKNE--NSLLS 311 (1033)
T ss_pred HHHHCC--CCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHH--HhccCCCCEEEEcCccccCCH--HHHHH
Confidence 999863 4677777765433222111 1 2347999999998865432 122234689999999998543 34455
Q ss_pred HHHHHcCCCCCCCcEEEEEeccC
Q 013173 320 KIVQQMDMPPPGMRQTMLFSATF 342 (448)
Q Consensus 320 ~i~~~l~~~~~~~~q~i~~SAT~ 342 (448)
.++..+. .. ..+++|+|.
T Consensus 312 kalr~L~----a~-~RLLLTGTP 329 (1033)
T PLN03142 312 KTMRLFS----TN-YRLLITGTP 329 (1033)
T ss_pred HHHHHhh----cC-cEEEEecCC
Confidence 6666662 22 358899995
No 113
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.42 E-value=2.9e-11 Score=121.69 Aligned_cols=226 Identities=20% Similarity=0.228 Sum_probs=156.8
Q ss_pred CCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccC-CcE----EEEEEC--------------CCChHHHHHHHhc----
Q 013173 216 PRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQT-GVK----VVVAYG--------------GAPINQQLRELER---- 272 (448)
Q Consensus 216 ~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~-~~~----~~~~~g--------------g~~~~~~~~~l~~---- 272 (448)
.+++....|++|||+|+|..|.++.+.+.++.... .+. ...-+| ......+.+.+-.
T Consensus 30 ~RDQGftRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~D 109 (442)
T PF06862_consen 30 FRDQGFTRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNND 109 (442)
T ss_pred hhccCCCCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCcc
Confidence 35678899999999999999999999988876431 100 000111 0111122222222
Q ss_pred ---------------------CccEEEeChHHHHHHHhc------ccccCCCeeEEEEcCCcccccCCCHHHHHHHHHHc
Q 013173 273 ---------------------GVDILVATPGRLVDLLER------ARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQM 325 (448)
Q Consensus 273 ---------------------~~~Ilv~Tp~~l~~~l~~------~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l 325 (448)
..|||||+|-.|...+.. ..-.|++|.++|||.||.|+.++| +++..+++++
T Consensus 110 D~FrlGik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW-~Hv~~v~~~l 188 (442)
T PF06862_consen 110 DCFRLGIKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNW-EHVLHVFEHL 188 (442)
T ss_pred ceEEEeEEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhH-HHHHHHHHHh
Confidence 249999999999998874 123489999999999999988887 7888999999
Q ss_pred CCCCCCC--------------------cEEEEEeccCchHHHHHHHhhhcCcEE---EEecc-----cccccCceeEEEE
Q 013173 326 DMPPPGM--------------------RQTMLFSATFPKEIQRLASDFLANYIF---LAVGR-----VGSSTDLIVQRVE 377 (448)
Q Consensus 326 ~~~~~~~--------------------~q~i~~SAT~~~~v~~l~~~~l~~~~~---i~v~~-----~~~~~~~i~q~~~ 377 (448)
+.+|.+. ||+|+||+...+++..+...++.|+.- +.... .......+.|.+.
T Consensus 189 N~~P~~~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~ 268 (442)
T PF06862_consen 189 NLQPKKSHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQ 268 (442)
T ss_pred ccCCCCCCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEE
Confidence 8776422 899999999999999999998877532 21111 1233456678777
Q ss_pred Eeccc-------chHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCCHHHHH
Q 013173 378 FVHES-------DKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTS 444 (448)
Q Consensus 378 ~~~~~-------~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~ 444 (448)
.++.. .+.....+-+...... ......||||++|--.=-.|-.+|...++....||--.++.+-.
T Consensus 269 r~~~~s~~~~~d~Rf~yF~~~iLP~l~~--~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~is 340 (442)
T PF06862_consen 269 RFDCSSPADDPDARFKYFTKKILPQLKR--DSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDIS 340 (442)
T ss_pred EecCCCcchhhhHHHHHHHHHHHHHhhh--ccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHH
Confidence 65432 2333333322222221 12367799999999999999999999999999999877776643
No 114
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.42 E-value=1.9e-11 Score=128.12 Aligned_cols=128 Identities=17% Similarity=0.131 Sum_probs=101.4
Q ss_pred CCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013173 166 VKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK 245 (448)
Q Consensus 166 ~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~ 245 (448)
..|+++|.-..-.++.|+ ++...||.|||++..+|++...+.. ..+.|++|+-.||.|-++.+..
T Consensus 77 ~r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~G-------------~~VhvvT~NdyLA~RDae~m~~ 141 (764)
T PRK12326 77 LRPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQG-------------RRVHVITVNDYLARRDAEWMGP 141 (764)
T ss_pred CCcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHcC-------------CCeEEEcCCHHHHHHHHHHHHH
Confidence 378999999988888774 7899999999999999988766543 2389999999999999999999
Q ss_pred hcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHH-HHHHhcc------cccCCCeeEEEEcCCcccc
Q 013173 246 FSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRL-VDLLERA------RVSLQMIRYLALDEADRML 310 (448)
Q Consensus 246 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l-~~~l~~~------~~~l~~v~~lVlDEah~ll 310 (448)
+....++++.++.++.+..+.... -.|||+++|..-| .|+|... ......+.+.||||+|.+|
T Consensus 142 ly~~LGLsvg~i~~~~~~~err~a--Y~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiL 211 (764)
T PRK12326 142 LYEALGLTVGWITEESTPEERRAA--YACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVL 211 (764)
T ss_pred HHHhcCCEEEEECCCCCHHHHHHH--HcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhhe
Confidence 999999999999888775533333 3589999998876 3344322 1234667899999999875
No 115
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.40 E-value=6.3e-11 Score=121.58 Aligned_cols=240 Identities=16% Similarity=0.130 Sum_probs=147.1
Q ss_pred hHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH-hcccCCc
Q 013173 174 HAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK-FSYQTGV 252 (448)
Q Consensus 174 ~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~-~~~~~~~ 252 (448)
+.+..+.+++-+++.++||||||+ ++| +.+.+.+.. ....+-|..|.|--|..++..... .....|-
T Consensus 58 ~il~~ve~nqvlIviGeTGsGKST--Qip--QyL~eaG~~--------~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~ 125 (674)
T KOG0922|consen 58 QILYAVEDNQVLIVIGETGSGKST--QIP--QYLAEAGFA--------SSGKIACTQPRRVAAVSLAKRVAEEMGCQLGE 125 (674)
T ss_pred HHHHHHHHCCEEEEEcCCCCCccc--cHh--HHHHhcccc--------cCCcEEeecCchHHHHHHHHHHHHHhCCCcCc
Confidence 445566678889999999999999 455 444443321 223488899999988888776653 3333343
Q ss_pred EEEE--EECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCC
Q 013173 253 KVVV--AYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPP 330 (448)
Q Consensus 253 ~~~~--~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~ 330 (448)
.|.. -+..... ....|.+.|-|.|++.+..... |+..+++||||||.-.- .-+.+.-+++.+-.. +
T Consensus 126 ~VGY~IRFed~ts--------~~TrikymTDG~LLRE~l~Dp~-LskYsvIIlDEAHERsl--~TDiLlGlLKki~~~-R 193 (674)
T KOG0922|consen 126 EVGYTIRFEDSTS--------KDTRIKYMTDGMLLREILKDPL-LSKYSVIILDEAHERSL--HTDILLGLLKKILKK-R 193 (674)
T ss_pred eeeeEEEecccCC--------CceeEEEecchHHHHHHhcCCc-cccccEEEEechhhhhh--HHHHHHHHHHHHHhc-C
Confidence 3332 2222221 1257999999999998876664 89999999999995421 112333344443222 4
Q ss_pred CCcEEEEEeccCchHHHHHHHhhhcC-cEEEEecccccccCceeEEEEEecccchHHHHHHHHHHHHhcCCCCCCCcEEE
Q 013173 331 GMRQTMLFSATFPKEIQRLASDFLAN-YIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLV 409 (448)
Q Consensus 331 ~~~q~i~~SAT~~~~v~~l~~~~l~~-~~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~tlV 409 (448)
.+.++|++|||+..+ ....|..+ +++..-++ .-.+...|..-+..+=....+..+....... +.+-+||
T Consensus 194 ~~LklIimSATlda~---kfS~yF~~a~i~~i~GR----~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E---~~GDILv 263 (674)
T KOG0922|consen 194 PDLKLIIMSATLDAE---KFSEYFNNAPILTIPGR----TFPVEILYLKEPTADYVDAALITVIQIHLTE---PPGDILV 263 (674)
T ss_pred CCceEEEEeeeecHH---HHHHHhcCCceEeecCC----CCceeEEeccCCchhhHHHHHHHHHHHHccC---CCCCEEE
Confidence 457899999999854 33455555 44433222 2223333333222222222222222211111 2456999
Q ss_pred EeCchhhHHHHHHHHHHC------CC--CeEEecCCCCHHHHHHhh
Q 013173 410 FVETKKGADALEHWLYMN------GF--PATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 410 F~~t~~~a~~l~~~L~~~------g~--~~~~iHg~~~q~eR~~~l 447 (448)
|....++.+.+++.|.+. +. -+..+||.|+.++..++.
T Consensus 264 FLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF 309 (674)
T KOG0922|consen 264 FLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVF 309 (674)
T ss_pred EeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccc
Confidence 999999999999999765 11 246799999999887764
No 116
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.29 E-value=8e-12 Score=123.52 Aligned_cols=242 Identities=17% Similarity=0.134 Sum_probs=155.0
Q ss_pred CCCCHHHHhHHhhHh-CC--CCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 013173 166 VKPTPVQRHAIPISI-GG--RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVE 242 (448)
Q Consensus 166 ~~pt~~Q~~~i~~i~-~g--~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~ 242 (448)
..++|+|..++..++ +| |.-+|+.|.|+|||++-+..+. .+ .-.+||||.+--.+.|....
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~-ti---------------kK~clvLcts~VSVeQWkqQ 364 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAAC-TI---------------KKSCLVLCTSAVSVEQWKQQ 364 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeee-ee---------------cccEEEEecCccCHHHHHHH
Confidence 468999999999888 44 6789999999999998655432 12 22499999999999999999
Q ss_pred HHHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhc----c----cccCCCeeEEEEcCCcccccCCC
Q 013173 243 AKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLER----A----RVSLQMIRYLALDEADRMLDMGF 314 (448)
Q Consensus 243 ~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~----~----~~~l~~v~~lVlDEah~ll~~gf 314 (448)
++.++..-.-.++.++.... .....++.|+|+|...+..--.+ . -+.-....++||||+|.+-..-|
T Consensus 365 fk~wsti~d~~i~rFTsd~K-----e~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MF 439 (776)
T KOG1123|consen 365 FKQWSTIQDDQICRFTSDAK-----ERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMF 439 (776)
T ss_pred HHhhcccCccceEEeecccc-----ccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHH
Confidence 99987655556666654432 22345789999998766321110 0 01235578899999999877667
Q ss_pred HHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHH-hhhcCcEEEE--------------ec-------------ccc
Q 013173 315 EPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLAS-DFLANYIFLA--------------VG-------------RVG 366 (448)
Q Consensus 315 ~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~-~~l~~~~~i~--------------v~-------------~~~ 366 (448)
+..+.-+-.++ -+.+|||+-.+-..+.. +||-.|.... |. +..
T Consensus 440 RRVlsiv~aHc---------KLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eY 510 (776)
T KOG1123|consen 440 RRVLSIVQAHC---------KLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREY 510 (776)
T ss_pred HHHHHHHHHHh---------hccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHH
Confidence 66666555665 58999998433222111 1222111111 10 011
Q ss_pred cccCceeEEEEEecccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCCHHHHHHh
Q 013173 367 SSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIE 446 (448)
Q Consensus 367 ~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~ 446 (448)
.....-...+.++-...|+....-|++.+.. .+.++|||..++-.....|-.|.+ -.|.|..+|.||.+|
T Consensus 511 L~~~t~kr~lLyvMNP~KFraCqfLI~~HE~-----RgDKiIVFsDnvfALk~YAikl~K-----pfIYG~Tsq~ERm~I 580 (776)
T KOG1123|consen 511 LRENTRKRMLLYVMNPNKFRACQFLIKFHER-----RGDKIIVFSDNVFALKEYAIKLGK-----PFIYGPTSQNERMKI 580 (776)
T ss_pred HhhhhhhhheeeecCcchhHHHHHHHHHHHh-----cCCeEEEEeccHHHHHHHHHHcCC-----ceEECCCchhHHHHH
Confidence 1111112233444445566655555554432 278899999987766666655543 278999999999998
Q ss_pred h
Q 013173 447 I 447 (448)
Q Consensus 447 l 447 (448)
|
T Consensus 581 L 581 (776)
T KOG1123|consen 581 L 581 (776)
T ss_pred H
Confidence 7
No 117
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.28 E-value=1.5e-11 Score=132.47 Aligned_cols=230 Identities=17% Similarity=0.223 Sum_probs=150.5
Q ss_pred CCCCCHHHHhHHhhHhC-CCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q 013173 165 YVKPTPVQRHAIPISIG-GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEA 243 (448)
Q Consensus 165 ~~~pt~~Q~~~i~~i~~-g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~ 243 (448)
|....|+|.++++.+.+ +.++++++|+|||||+|.-+.++. .....++++++|.-+.+..++..+
T Consensus 1141 f~~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~--------------~~~~~~~vyi~p~~~i~~~~~~~w 1206 (1674)
T KOG0951|consen 1141 FQDFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR--------------PDTIGRAVYIAPLEEIADEQYRDW 1206 (1674)
T ss_pred ccccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC--------------CccceEEEEecchHHHHHHHHHHH
Confidence 44568999999998875 566999999999999999988775 133457999999999999888877
Q ss_pred H-HhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcccccCC---C--HHH
Q 013173 244 K-KFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMG---F--EPQ 317 (448)
Q Consensus 244 ~-~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~g---f--~~~ 317 (448)
. +|....|..++.+.|..+.... .+. .-+|+|+||+++-.+ + ..+.+++.|.||+|.+.+.+ + .-.
T Consensus 1207 ~~~f~~~~G~~~~~l~ge~s~~lk--l~~-~~~vii~tpe~~d~l-q----~iQ~v~l~i~d~lh~igg~~g~v~evi~S 1278 (1674)
T KOG0951|consen 1207 EKKFSKLLGLRIVKLTGETSLDLK--LLQ-KGQVIISTPEQWDLL-Q----SIQQVDLFIVDELHLIGGVYGAVYEVICS 1278 (1674)
T ss_pred HHhhccccCceEEecCCccccchH--Hhh-hcceEEechhHHHHH-h----hhhhcceEeeehhhhhcccCCceEEEEee
Confidence 5 5776788888888777665432 233 358999999998655 2 57889999999999887432 1 112
Q ss_pred HHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEecccccccCceeEEEEEecc---cchHHHHHHHHHH
Q 013173 318 IRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHE---SDKRSHLMDLLHA 394 (448)
Q Consensus 318 i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~---~~k~~~L~~ll~~ 394 (448)
++.|-..+ -++.+++.+|..+... .+++.- ....++....+.-.......+..+.. ......+.+....
T Consensus 1279 ~r~ia~q~----~k~ir~v~ls~~lana-~d~ig~---s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ 1350 (1674)
T KOG0951|consen 1279 MRYIASQL----EKKIRVVALSSSLANA-RDLIGA---SSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYT 1350 (1674)
T ss_pred HHHHHHHH----HhheeEEEeehhhccc-hhhccc---cccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHH
Confidence 66777776 5667899998887543 222111 11111111122112222223333332 2222222222222
Q ss_pred HHhcCCCCCCCcEEEEeCchhhHHHHHHHHH
Q 013173 395 QVANGVHGKQALTLVFVETKKGADALEHWLY 425 (448)
Q Consensus 395 ~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~ 425 (448)
..... .+...+++||+++++.|..++.-|-
T Consensus 1351 ai~~~-a~~~k~~~vf~p~rk~~~~~a~~~~ 1380 (1674)
T KOG0951|consen 1351 AIVRH-AGNRKPAIVFLPTRKHARLVAVDLV 1380 (1674)
T ss_pred HHHHH-hcCCCCeEEEeccchhhhhhhhccc
Confidence 21111 1347889999999999999887663
No 118
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.26 E-value=3.9e-11 Score=126.54 Aligned_cols=72 Identities=24% Similarity=0.152 Sum_probs=56.2
Q ss_pred hHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhc-cc--CCcEE
Q 013173 178 ISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFS-YQ--TGVKV 254 (448)
Q Consensus 178 ~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~-~~--~~~~~ 254 (448)
.+..++.+++.|+||+|||++|++|++..+... .+.++||++||++|+.|+.+.+..+. .. ..+++
T Consensus 12 al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~-----------~~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i~~ 80 (636)
T TIGR03117 12 SLRQKRIGMLEASTGVGKTLAMIMAALTMLKER-----------PDQKIAIAVPTLALMGQLWSELERLTAEGLAGPVQA 80 (636)
T ss_pred HHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhc-----------cCceEEEECCcHHHHHHHHHHHHHHHHhhcCCCeeE
Confidence 445788999999999999999999999876532 12469999999999999999988887 32 24555
Q ss_pred EEEECC
Q 013173 255 VVAYGG 260 (448)
Q Consensus 255 ~~~~gg 260 (448)
.++.|.
T Consensus 81 ~~lkGr 86 (636)
T TIGR03117 81 GFFPGS 86 (636)
T ss_pred EEEECC
Confidence 554443
No 119
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.26 E-value=1.9e-10 Score=115.06 Aligned_cols=104 Identities=23% Similarity=0.203 Sum_probs=73.2
Q ss_pred CcEEEEEeccCchHHHHHHHhhhcCcEEEEecccccccCceeEEEEEecccchHHHHHHHHHHHHhcCCCCCCCcEEEEe
Q 013173 332 MRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFV 411 (448)
Q Consensus 332 ~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~ 411 (448)
..|+|.+|||..+.-.+.... +.+.-.+. ++..+.-.++.-+.....+.|+.-+...... +.++||-+
T Consensus 386 ~~q~i~VSATPg~~E~e~s~~---~vveQiIR----PTGLlDP~ievRp~~~QvdDL~~EI~~r~~~-----~eRvLVTt 453 (663)
T COG0556 386 IPQTIYVSATPGDYELEQSGG---NVVEQIIR----PTGLLDPEIEVRPTKGQVDDLLSEIRKRVAK-----NERVLVTT 453 (663)
T ss_pred cCCEEEEECCCChHHHHhccC---ceeEEeec----CCCCCCCceeeecCCCcHHHHHHHHHHHHhc-----CCeEEEEe
Confidence 369999999986543322211 11222221 2222333344445555667777777665433 68899999
Q ss_pred CchhhHHHHHHHHHHCCCCeEEecCCCCHHHHHHhh
Q 013173 412 ETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 412 ~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
-|++.|+.|.++|...|+++..+|++...-||-++|
T Consensus 454 LTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIi 489 (663)
T COG0556 454 LTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEII 489 (663)
T ss_pred ehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHH
Confidence 999999999999999999999999999999999887
No 120
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.26 E-value=3.8e-11 Score=119.55 Aligned_cols=265 Identities=20% Similarity=0.277 Sum_probs=172.9
Q ss_pred CCCHHHHhHHhhHhCCCCeeEEccC-CCCc--cchhhhhHHHHHhhhhcc------------------cCCCCCCCCCce
Q 013173 167 KPTPVQRHAIPISIGGRDLMACAQT-GSGK--TAAFCFPIISGIMREQYV------------------QRPRGSRTVYPL 225 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~~g~d~lv~a~T-GsGK--T~~~~lpil~~l~~~~~~------------------~~~~~~~~~~~~ 225 (448)
.+|+.|.+.+.++.+.+|++..-.| +.|+ +-.|++-+|+++++.+.. ...+++....|+
T Consensus 216 pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tRpk 295 (698)
T KOG2340|consen 216 PLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTRPK 295 (698)
T ss_pred cchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCCce
Confidence 4799999999999999998864332 3344 567999999999873321 011356678899
Q ss_pred EEEEcCcHHHHHHHHHHHHHhcccCCc---------EEEEEECC--------CChHHHHHHHhc----------------
Q 013173 226 ALILAPTRELSSQIHVEAKKFSYQTGV---------KVVVAYGG--------APINQQLRELER---------------- 272 (448)
Q Consensus 226 ~lil~PtreL~~qi~~~~~~~~~~~~~---------~~~~~~gg--------~~~~~~~~~l~~---------------- 272 (448)
||||||+|+.|-.+.+.+..+....+- +..--|+| ....+..+.+-.
T Consensus 296 VLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ftkK 375 (698)
T KOG2340|consen 296 VLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFTKK 375 (698)
T ss_pred EEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHHHH
Confidence 999999999999999998887322111 11111222 011111111111
Q ss_pred ---------CccEEEeChHHHHHHHhc---cc---ccCCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCC------
Q 013173 273 ---------GVDILVATPGRLVDLLER---AR---VSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPG------ 331 (448)
Q Consensus 273 ---------~~~Ilv~Tp~~l~~~l~~---~~---~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~------ 331 (448)
..|||||+|-.|..++.+ ++ -.|++|.++|||.||.|+.++| +.+..|+.+|+..|..
T Consensus 376 tikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNw-Ehl~~ifdHLn~~P~k~h~~Df 454 (698)
T KOG2340|consen 376 TIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNW-EHLLHIFDHLNLQPSKQHDVDF 454 (698)
T ss_pred HHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhH-HHHHHHHHHhhcCcccccCCCh
Confidence 359999999999988863 12 2378999999999999998887 7788999999776543
Q ss_pred --------------CcEEEEEeccCchHHHHHHHhhhcCcEEEEecc-------cccccCceeEEEEEe--c-----ccc
Q 013173 332 --------------MRQTMLFSATFPKEIQRLASDFLANYIFLAVGR-------VGSSTDLIVQRVEFV--H-----ESD 383 (448)
Q Consensus 332 --------------~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~-------~~~~~~~i~q~~~~~--~-----~~~ 383 (448)
-+|+|+||+-..+.+..+...++.|..-....+ .....-.+.|.+..+ + ...
T Consensus 455 SRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~D~ 534 (698)
T KOG2340|consen 455 SRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIETPDA 534 (698)
T ss_pred hheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccCchH
Confidence 179999999999999999988887654221110 111111223322222 1 123
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCCeEEec
Q 013173 384 KRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIH 435 (448)
Q Consensus 384 k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iH 435 (448)
++....+-+.-+..... ..-+|||.++--.--.+-.+|....+.-..||
T Consensus 535 RFkyFv~~ImPq~~k~t---~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~ 583 (698)
T KOG2340|consen 535 RFKYFVDKIMPQLIKRT---ESGILIYIPSYFDFVRVRNYMKKEEISFVMIN 583 (698)
T ss_pred HHHHHHHhhchhhcccc---cCceEEEecchhhHHHHHHHhhhhhcchHHHh
Confidence 34444433333322211 34479999999888889999988877666555
No 121
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.24 E-value=2.5e-10 Score=122.65 Aligned_cols=128 Identities=16% Similarity=0.121 Sum_probs=98.6
Q ss_pred CCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013173 166 VKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK 245 (448)
Q Consensus 166 ~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~ 245 (448)
..|.++|--.--.+. +--|+...||+|||+++.+|++-..+.. ..+-|++|+--||.+-++.+..
T Consensus 81 m~~ydVQliGg~~Lh--~G~iaEM~TGEGKTLvA~l~a~l~al~G-------------~~VhvvT~ndyLA~RD~e~m~~ 145 (913)
T PRK13103 81 MRHFDVQLIGGMTLH--EGKIAEMRTGEGKTLVGTLAVYLNALSG-------------KGVHVVTVNDYLARRDANWMRP 145 (913)
T ss_pred CCcchhHHHhhhHhc--cCccccccCCCCChHHHHHHHHHHHHcC-------------CCEEEEeCCHHHHHHHHHHHHH
Confidence 367777775544443 4468899999999999999998655443 3489999999999999999999
Q ss_pred hcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHH-HHHHhccc------ccCCCeeEEEEcCCcccc
Q 013173 246 FSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRL-VDLLERAR------VSLQMIRYLALDEADRML 310 (448)
Q Consensus 246 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l-~~~l~~~~------~~l~~v~~lVlDEah~ll 310 (448)
+....++++.++.++.+..+..... .+||+++|..-| .|+|...- .....+.|+||||+|.+|
T Consensus 146 l~~~lGl~v~~i~~~~~~~err~~Y--~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiL 215 (913)
T PRK13103 146 LYEFLGLSVGIVTPFQPPEEKRAAY--AADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSIL 215 (913)
T ss_pred HhcccCCEEEEECCCCCHHHHHHHh--cCCEEEEcccccccchhhccceechhhhcccccceeEechhhhee
Confidence 9999999999998877655443333 389999999886 44444321 124778999999999885
No 122
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.24 E-value=5.3e-11 Score=130.54 Aligned_cols=83 Identities=23% Similarity=0.244 Sum_probs=66.3
Q ss_pred CCCCCCHHHHhHHhh----HhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHH
Q 013173 164 KYVKPTPVQRHAIPI----SIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQI 239 (448)
Q Consensus 164 ~~~~pt~~Q~~~i~~----i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi 239 (448)
+| ++++-|.+.+.. +..++++++.|+||+|||++|++|++... .++++||++||++|+.|+
T Consensus 243 ~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~--------------~~~~vvI~t~T~~Lq~Ql 307 (820)
T PRK07246 243 GL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS--------------DQRQIIVSVPTKILQDQI 307 (820)
T ss_pred CC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc--------------CCCcEEEEeCcHHHHHHH
Confidence 44 689999985443 34678899999999999999999988643 124699999999999999
Q ss_pred -HHHHHHhcccCCcEEEEEECCC
Q 013173 240 -HVEAKKFSYQTGVKVVVAYGGA 261 (448)
Q Consensus 240 -~~~~~~~~~~~~~~~~~~~gg~ 261 (448)
...+..+....++++.++.|+.
T Consensus 308 ~~~~i~~l~~~~~~~~~~~kg~~ 330 (820)
T PRK07246 308 MAEEVKAIQEVFHIDCHSLKGPQ 330 (820)
T ss_pred HHHHHHHHHHhcCCcEEEEECCc
Confidence 4778888777788887777664
No 123
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.21 E-value=5.9e-11 Score=125.33 Aligned_cols=166 Identities=22% Similarity=0.267 Sum_probs=119.9
Q ss_pred CCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH-
Q 013173 167 KPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK- 245 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~- 245 (448)
.|..+|.+.+..+-.+..++++|||.+|||.+ ..-++..+++.... ..+|+++||.+|+.|+...+..
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfi-sfY~iEKVLResD~----------~VVIyvaPtKaLVnQvsa~VyaR 579 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFI-SFYAIEKVLRESDS----------DVVIYVAPTKALVNQVSANVYAR 579 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceec-cHHHHHHHHhhcCC----------CEEEEecchHHHhhhhhHHHHHh
Confidence 58889999999999999999999999999996 45566777665422 2489999999999999777654
Q ss_pred hcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhc---ccccCCCeeEEEEcCCcccccCCCHHHHHHHH
Q 013173 246 FSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLER---ARVSLQMIRYLALDEADRMLDMGFEPQIRKIV 322 (448)
Q Consensus 246 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~---~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~ 322 (448)
|...+-.+.+.+.|.....+++.- -.|+|+|+-|+-|..+|.. .......++|+|+||+|.+..+.-.--++.++
T Consensus 580 F~~~t~~rg~sl~g~ltqEYsinp--~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll 657 (1330)
T KOG0949|consen 580 FDTKTFLRGVSLLGDLTQEYSINP--WNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLL 657 (1330)
T ss_pred hccCccccchhhHhhhhHHhcCCc--hhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHH
Confidence 323333344444555444444332 2489999999999998876 34467899999999999997654333445555
Q ss_pred HHcCCCCCCCcEEEEEeccC--chHHHHHHH
Q 013173 323 QQMDMPPPGMRQTMLFSATF--PKEIQRLAS 351 (448)
Q Consensus 323 ~~l~~~~~~~~q~i~~SAT~--~~~v~~l~~ 351 (448)
..+ .+.++.+|||+ +...+.+..
T Consensus 658 ~li------~CP~L~LSATigN~~l~qkWln 682 (1330)
T KOG0949|consen 658 LLI------PCPFLVLSATIGNPNLFQKWLN 682 (1330)
T ss_pred Hhc------CCCeeEEecccCCHHHHHHHHH
Confidence 555 25699999998 344444444
No 124
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.20 E-value=5.1e-10 Score=119.73 Aligned_cols=127 Identities=20% Similarity=0.173 Sum_probs=95.8
Q ss_pred CCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013173 167 KPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF 246 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~ 246 (448)
.|+++|--..-.+ .+.-++.+.||-|||+++.+|++-..+.. ..|-|++++..||.+-++.+..+
T Consensus 76 r~ydvQlig~l~L--~~G~IaEm~TGEGKTL~a~l~ayl~aL~G-------------~~VhVvT~NdyLA~RD~e~m~pv 140 (870)
T CHL00122 76 RHFDVQLIGGLVL--NDGKIAEMKTGEGKTLVATLPAYLNALTG-------------KGVHIVTVNDYLAKRDQEWMGQI 140 (870)
T ss_pred CCCchHhhhhHhh--cCCccccccCCCCchHHHHHHHHHHHhcC-------------CceEEEeCCHHHHHHHHHHHHHH
Confidence 5778887665333 45689999999999999999986433322 23899999999999999999999
Q ss_pred cccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHH-HHHHhcc------cccCCCeeEEEEcCCcccc
Q 013173 247 SYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRL-VDLLERA------RVSLQMIRYLALDEADRML 310 (448)
Q Consensus 247 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l-~~~l~~~------~~~l~~v~~lVlDEah~ll 310 (448)
....|+.+.++.++.+..+. .-.-.|||+++|..-| .|+|... ......+.|.||||+|.+|
T Consensus 141 y~~LGLsvg~i~~~~~~~er--r~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 141 YRFLGLTVGLIQEGMSSEER--KKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSIL 209 (870)
T ss_pred HHHcCCceeeeCCCCChHHH--HHhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhe
Confidence 99999999998887776443 3334589999998755 2333322 1234668899999999875
No 125
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.16 E-value=1.7e-09 Score=112.14 Aligned_cols=254 Identities=21% Similarity=0.292 Sum_probs=161.2
Q ss_pred CCCHHHHhHHhhHh----CCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 013173 167 KPTPVQRHAIPISI----GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVE 242 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~----~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~ 242 (448)
.++++|.+-+..+. +|-+.|+.-+.|-|||+. .+.+|..+..... ..+| -||+||...|.+. .++
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQ-tIs~l~yl~~~~~--------~~GP-fLVi~P~StL~NW-~~E 235 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQ-TISLLGYLKGRKG--------IPGP-FLVIAPKSTLDNW-MNE 235 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHH-HHHHHHHHHHhcC--------CCCC-eEEEeeHhhHHHH-HHH
Confidence 47899998887554 678899999999999987 3455555543221 2233 4999999998765 677
Q ss_pred HHHhcccCCcEEEEEECCCChHHHHH-H-H-hcCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcccccCCCHHHHH
Q 013173 243 AKKFSYQTGVKVVVAYGGAPINQQLR-E-L-ERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIR 319 (448)
Q Consensus 243 ~~~~~~~~~~~~~~~~gg~~~~~~~~-~-l-~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~ 319 (448)
+++|+ +++++++++|......... . + ....+|+|+|.+..+.- +..+.--..+|+||||||++-... ..+.
T Consensus 236 f~rf~--P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~d--k~~lk~~~W~ylvIDEaHRiKN~~--s~L~ 309 (971)
T KOG0385|consen 236 FKRFT--PSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKD--KSFLKKFNWRYLVIDEAHRIKNEK--SKLS 309 (971)
T ss_pred HHHhC--CCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhh--HHHHhcCCceEEEechhhhhcchh--hHHH
Confidence 88886 4688999888764333221 1 1 22479999999987653 222233457999999999996643 4555
Q ss_pred HHHHHcCCCCCCCcEEEEEeccCc-hHHHH---HH-------------------------------------Hhh-----
Q 013173 320 KIVQQMDMPPPGMRQTMLFSATFP-KEIQR---LA-------------------------------------SDF----- 353 (448)
Q Consensus 320 ~i~~~l~~~~~~~~q~i~~SAT~~-~~v~~---l~-------------------------------------~~~----- 353 (448)
+++..+.... -+++|.|.- +.+.+ |+ +-|
T Consensus 310 ~~lr~f~~~n-----rLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~ 384 (971)
T KOG0385|consen 310 KILREFKTDN-----RLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRI 384 (971)
T ss_pred HHHHHhcccc-----eeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHH
Confidence 6777763321 467777721 00000 00 000
Q ss_pred -------hcC--cEEEEeccc------------------ccc-------cCce--------eEEE---------------
Q 013173 354 -------LAN--YIFLAVGRV------------------GSS-------TDLI--------VQRV--------------- 376 (448)
Q Consensus 354 -------l~~--~~~i~v~~~------------------~~~-------~~~i--------~q~~--------------- 376 (448)
+.. -+.+.++-. ... +.|| .+-|
T Consensus 385 K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttde 464 (971)
T KOG0385|consen 385 KSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDE 464 (971)
T ss_pred HHhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcch
Confidence 000 011111100 000 0000 0000
Q ss_pred EEecccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCCHHHHHHhh
Q 013173 377 EFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 377 ~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
..+....|...|-++|...... +.++|||..=-+.-+-|.+++.-.++...-|.|.++-+||..+|
T Consensus 465 hLv~nSGKm~vLDkLL~~Lk~~-----GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI 530 (971)
T KOG0385|consen 465 HLVTNSGKMLVLDKLLPKLKEQ-----GHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAI 530 (971)
T ss_pred HHHhcCcceehHHHHHHHHHhC-----CCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHH
Confidence 0122345666777777766543 88999999999999999999999999999999999999999887
No 126
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.15 E-value=3.8e-09 Score=107.99 Aligned_cols=244 Identities=16% Similarity=0.119 Sum_probs=150.6
Q ss_pred CHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH-hc
Q 013173 169 TPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK-FS 247 (448)
Q Consensus 169 t~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~-~~ 247 (448)
.++-.+.+..+...+-+||.+.||||||+ ++| +.|...+... .+-++-|..|.|--|..++..+.+ +.
T Consensus 267 y~ykdell~av~e~QVLiI~GeTGSGKTT--QiP--QyL~EaGytk-------~gk~IgcTQPRRVAAmSVAaRVA~EMg 335 (902)
T KOG0923|consen 267 YPYKDELLKAVKEHQVLIIVGETGSGKTT--QIP--QYLYEAGYTK-------GGKKIGCTQPRRVAAMSVAARVAEEMG 335 (902)
T ss_pred hhhHHHHHHHHHhCcEEEEEcCCCCCccc--ccc--HHHHhccccc-------CCceEeecCcchHHHHHHHHHHHHHhC
Confidence 34555667777788999999999999999 566 4455444321 122377889999999998766654 33
Q ss_pred ccC----CcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcccccCCCHHHHHHHHH
Q 013173 248 YQT----GVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQ 323 (448)
Q Consensus 248 ~~~----~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~ 323 (448)
..+ |+.+.. -... ....-|=+.|-|.|+.-+.... +|.+.+++||||||.-.- .-+.+--+++
T Consensus 336 vkLG~eVGYsIRF--EdcT--------SekTvlKYMTDGmLlREfL~ep-dLasYSViiiDEAHERTL--~TDILfgLvK 402 (902)
T KOG0923|consen 336 VKLGHEVGYSIRF--EDCT--------SEKTVLKYMTDGMLLREFLSEP-DLASYSVIIVDEAHERTL--HTDILFGLVK 402 (902)
T ss_pred cccccccceEEEe--cccc--------CcceeeeeecchhHHHHHhccc-cccceeEEEeehhhhhhh--hhhHHHHHHH
Confidence 222 222221 1111 1123466999999988766443 689999999999995421 0122233333
Q ss_pred HcCCCCCCCcEEEEEeccCchHHHHHHHhhhc-CcEEEEecccccccCceeEEEEEecccchHHHHHHHHHHHHhcCCCC
Q 013173 324 QMDMPPPGMRQTMLFSATFPKEIQRLASDFLA-NYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHG 402 (448)
Q Consensus 324 ~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~-~~~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~~~ 402 (448)
.+... .++..+++.|||+..+ .+ ..|+. -|+|...++. -.+..+|...++.+=..+.+.-+...-..+
T Consensus 403 DIar~-RpdLKllIsSAT~DAe--kF-S~fFDdapIF~iPGRR----yPVdi~Yt~~PEAdYldAai~tVlqIH~tq--- 471 (902)
T KOG0923|consen 403 DIARF-RPDLKLLISSATMDAE--KF-SAFFDDAPIFRIPGRR----YPVDIFYTKAPEADYLDAAIVTVLQIHLTQ--- 471 (902)
T ss_pred HHHhh-CCcceEEeeccccCHH--HH-HHhccCCcEEeccCcc----cceeeecccCCchhHHHHHHhhheeeEecc---
Confidence 33222 4678899999999865 22 34444 4666654433 223445555555554444333332222222
Q ss_pred CCCcEEEEeCchhhHHHHHHHHHHC---------CCCeEEecCCCCHHHHHHhh
Q 013173 403 KQALTLVFVETKKGADALEHWLYMN---------GFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 403 ~~~~tlVF~~t~~~a~~l~~~L~~~---------g~~~~~iHg~~~q~eR~~~l 447 (448)
..+-+|||..-.++.+.+.+.|... .+-+..||+.+++.....|.
T Consensus 472 p~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIF 525 (902)
T KOG0923|consen 472 PLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIF 525 (902)
T ss_pred CCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhc
Confidence 2456999999988887777766542 24578899999998876654
No 127
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.14 E-value=9.1e-10 Score=117.25 Aligned_cols=220 Identities=19% Similarity=0.222 Sum_probs=142.4
Q ss_pred CCCHHHHhHHhhHhCC----CCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 013173 167 KPTPVQRHAIPISIGG----RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVE 242 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~~g----~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~ 242 (448)
.+++-|+.++..+... ...++.+-||||||.+|+-. +...+..+ -++|||+|-..|-.|+.+.
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~-i~~~L~~G------------kqvLvLVPEI~Ltpq~~~r 264 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEA-IAKVLAQG------------KQVLVLVPEIALTPQLLAR 264 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHH-HHHHHHcC------------CEEEEEeccccchHHHHHH
Confidence 4677899999988654 66899999999999998654 44444332 3599999999999999999
Q ss_pred HHHhcccCCcEEEEEECCCChHHHHHHHhc----CccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcccc---cCC--
Q 013173 243 AKKFSYQTGVKVVVAYGGAPINQQLRELER----GVDILVATPGRLVDLLERARVSLQMIRYLALDEADRML---DMG-- 313 (448)
Q Consensus 243 ~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~----~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll---~~g-- 313 (448)
++... +.++.+++++.+..+....|.+ ...|+|+|=.-|. ..++++.++||||=|--. +.+
T Consensus 265 f~~rF---g~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF-------~Pf~~LGLIIvDEEHD~sYKq~~~pr 334 (730)
T COG1198 265 FKARF---GAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEDGPR 334 (730)
T ss_pred HHHHh---CCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhc-------CchhhccEEEEeccccccccCCcCCC
Confidence 98753 5788888988887665544433 4799999954432 358999999999999532 112
Q ss_pred -CHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEecccccccCceeEEEEEeccc-chH-----H
Q 013173 314 -FEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHES-DKR-----S 386 (448)
Q Consensus 314 -f~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~-~k~-----~ 386 (448)
...++.....+. ..+++|+-|||..-+-...+. -..+..+.+.............+..+..+ .+. .
T Consensus 335 YhARdvA~~Ra~~-----~~~pvvLgSATPSLES~~~~~--~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~ 407 (730)
T COG1198 335 YHARDVAVLRAKK-----ENAPVVLGSATPSLESYANAE--SGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSP 407 (730)
T ss_pred cCHHHHHHHHHHH-----hCCCEEEecCCCCHHHHHhhh--cCceEEEEccccccccCCCcceEEeccccccccCccCCH
Confidence 222333333333 456799999997765444442 22344443332222222222233333222 122 4
Q ss_pred HHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHH
Q 013173 387 HLMDLLHAQVANGVHGKQALTLVFVETKKGADALE 421 (448)
Q Consensus 387 ~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~ 421 (448)
.|++.+...... +.++|+|.|.+.-+-.+.
T Consensus 408 ~Ll~~i~~~l~~-----geQ~llflnRRGys~~l~ 437 (730)
T COG1198 408 ALLEAIRKTLER-----GEQVLLFLNRRGYAPLLL 437 (730)
T ss_pred HHHHHHHHHHhc-----CCeEEEEEccCCccceee
Confidence 566666654432 788999999987664443
No 128
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.13 E-value=2.7e-09 Score=114.19 Aligned_cols=127 Identities=20% Similarity=0.161 Sum_probs=97.4
Q ss_pred CCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013173 167 KPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF 246 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~ 246 (448)
.|.++|--.--.+ .+--|+.+.||-|||+++.+|++-..+.. ..|-||++...||..=++.+..+
T Consensus 85 r~ydVQliGgl~L--h~G~IAEM~TGEGKTL~atlpaylnAL~G-------------kgVhVVTvNdYLA~RDae~m~~v 149 (939)
T PRK12902 85 RHFDVQLIGGMVL--HEGQIAEMKTGEGKTLVATLPSYLNALTG-------------KGVHVVTVNDYLARRDAEWMGQV 149 (939)
T ss_pred CcchhHHHhhhhh--cCCceeeecCCCChhHHHHHHHHHHhhcC-------------CCeEEEeCCHHHHHhHHHHHHHH
Confidence 5777776655444 34468999999999999999988655433 23899999999999999999999
Q ss_pred cccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHH-----HHHHhcc--cccCCCeeEEEEcCCcccc
Q 013173 247 SYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRL-----VDLLERA--RVSLQMIRYLALDEADRML 310 (448)
Q Consensus 247 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l-----~~~l~~~--~~~l~~v~~lVlDEah~ll 310 (448)
....|+.|.++.++.+..+ +...-.|||+++|+..| .|.+... ......+.|.||||+|.+|
T Consensus 150 y~~LGLtvg~i~~~~~~~e--rr~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 150 HRFLGLSVGLIQQDMSPEE--RKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred HHHhCCeEEEECCCCChHH--HHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 9999999999887766543 33445699999999988 4444321 1235778899999999875
No 129
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=1.9e-09 Score=112.12 Aligned_cols=222 Identities=18% Similarity=0.166 Sum_probs=123.8
Q ss_pred hHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHH-Hhcc-cCCcEEE
Q 013173 178 ISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAK-KFSY-QTGVKVV 255 (448)
Q Consensus 178 ~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~-~~~~-~~~~~~~ 255 (448)
.|..+--+|||++||||||+ ++| ++|+.-+..... ......+=|..|.|--|..++.... .++. ...+...
T Consensus 267 aIn~n~vvIIcGeTGsGKTT--QvP--QFLYEAGf~s~~---~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYq 339 (1172)
T KOG0926|consen 267 AINENPVVIICGETGSGKTT--QVP--QFLYEAGFASEQ---SSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQ 339 (1172)
T ss_pred HhhcCCeEEEecCCCCCccc--cch--HHHHHcccCCcc---CCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEE
Confidence 34445558999999999999 455 556665544321 1112356678899998888766554 3433 2223444
Q ss_pred EEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcccccC-----CCHHHHHHHHHHcCC--C
Q 013173 256 VAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDM-----GFEPQIRKIVQQMDM--P 328 (448)
Q Consensus 256 ~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~-----gf~~~i~~i~~~l~~--~ 328 (448)
+.|.|+- .....|.+.|-|.|+.-|++.. -|...+.+||||||.-.-. |...-|..+-..+.. .
T Consensus 340 IRfd~ti--------~e~T~IkFMTDGVLLrEi~~Df-lL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~ke~~ 410 (1172)
T KOG0926|consen 340 IRFDGTI--------GEDTSIKFMTDGVLLREIENDF-LLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYKEQC 410 (1172)
T ss_pred EEecccc--------CCCceeEEecchHHHHHHHHhH-hhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhhhhc
Confidence 4455533 2236899999999999888664 4888999999999964321 111111111111100 0
Q ss_pred CCCCcEEEEEeccCchHHHHHHHhhhcC-------cEEEEecccccccCceeEEEEEecccchHHHHHHHHHHHHhcCCC
Q 013173 329 PPGMRQTMLFSATFPKEIQRLASDFLAN-------YIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVH 401 (448)
Q Consensus 329 ~~~~~q~i~~SAT~~~~v~~l~~~~l~~-------~~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~~ 401 (448)
.-+....|+||||+--+ +|..+ |-.+.|+ .-.-.+..+|...... ..+.+.......-+..
T Consensus 411 ~~kpLKLIIMSATLRVs------DFtenk~LFpi~pPlikVd---ARQfPVsIHF~krT~~---DYi~eAfrKtc~IH~k 478 (1172)
T KOG0926|consen 411 QIKPLKLIIMSATLRVS------DFTENKRLFPIPPPLIKVD---ARQFPVSIHFNKRTPD---DYIAEAFRKTCKIHKK 478 (1172)
T ss_pred ccCceeEEEEeeeEEec------ccccCceecCCCCceeeee---cccCceEEEeccCCCc---hHHHHHHHHHHHHhhc
Confidence 11245789999998422 23211 1123322 1111222233222221 2222222111100001
Q ss_pred CCCCcEEEEeCchhhHHHHHHHHHHC
Q 013173 402 GKQALTLVFVETKKGADALEHWLYMN 427 (448)
Q Consensus 402 ~~~~~tlVF~~t~~~a~~l~~~L~~~ 427 (448)
-..+-+|||+.-..++++|++.|+..
T Consensus 479 LP~G~ILVFvTGQqEV~qL~~kLRK~ 504 (1172)
T KOG0926|consen 479 LPPGGILVFVTGQQEVDQLCEKLRKR 504 (1172)
T ss_pred CCCCcEEEEEeChHHHHHHHHHHHhh
Confidence 12677999999999999999999865
No 130
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.09 E-value=5.1e-10 Score=95.16 Aligned_cols=138 Identities=19% Similarity=0.183 Sum_probs=80.8
Q ss_pred CCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECC
Q 013173 181 GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGG 260 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg 260 (448)
+|+=.++...+|+|||.-.+.-++...+.. +.++|||.|||.++..+.+.++.. .+++.. .
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~------------~~rvLvL~PTRvva~em~~aL~~~----~~~~~t---~ 63 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIKR------------RLRVLVLAPTRVVAEEMYEALKGL----PVRFHT---N 63 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHHT------------T--EEEEESSHHHHHHHHHHTTTS----SEEEES---T
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHHc------------cCeEEEecccHHHHHHHHHHHhcC----CcccCc---e
Confidence 344568899999999998665555544433 246999999999999998888764 222221 1
Q ss_pred CChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEec
Q 013173 261 APINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSA 340 (448)
Q Consensus 261 ~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SA 340 (448)
.... ....+.-|-|.|-+.+.+.+.+ ...+.+.+++|+||||..-... -..+..+..+.. .....+|++||
T Consensus 64 ~~~~----~~~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~Dp~s--IA~rg~l~~~~~--~g~~~~i~mTA 134 (148)
T PF07652_consen 64 ARMR----THFGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFTDPTS--IAARGYLRELAE--SGEAKVIFMTA 134 (148)
T ss_dssp TSS--------SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT--SHHH--HHHHHHHHHHHH--TTS-EEEEEES
T ss_pred eeec----cccCCCcccccccHHHHHHhcC-cccccCccEEEEeccccCCHHH--HhhheeHHHhhh--ccCeeEEEEeC
Confidence 1100 1112345778899998887766 5567899999999999752211 112222222211 23357999999
Q ss_pred cCchHH
Q 013173 341 TFPKEI 346 (448)
Q Consensus 341 T~~~~v 346 (448)
|.|-..
T Consensus 135 TPPG~~ 140 (148)
T PF07652_consen 135 TPPGSE 140 (148)
T ss_dssp S-TT--
T ss_pred CCCCCC
Confidence 998654
No 131
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.07 E-value=1.5e-09 Score=105.47 Aligned_cols=73 Identities=18% Similarity=0.115 Sum_probs=57.5
Q ss_pred CCCHHHHhHH----hhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 013173 167 KPTPVQRHAI----PISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVE 242 (448)
Q Consensus 167 ~pt~~Q~~~i----~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~ 242 (448)
.|+|.|.+.+ ..+..+.++++.||||+|||++|++|++..+...+.. ....+++|.++|..+..|....
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~-------~~~~kvi~~t~T~~~~~q~i~~ 80 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER-------IQKIKLIYLSRTVSEIEKRLEE 80 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc-------ccccceeEEeccHHHHHHHHHH
Confidence 4799999955 4555789999999999999999999999876643311 0123589999999999998888
Q ss_pred HHHh
Q 013173 243 AKKF 246 (448)
Q Consensus 243 ~~~~ 246 (448)
++++
T Consensus 81 l~~~ 84 (289)
T smart00489 81 LRKL 84 (289)
T ss_pred HHhc
Confidence 8765
No 132
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.07 E-value=1.5e-09 Score=105.47 Aligned_cols=73 Identities=18% Similarity=0.115 Sum_probs=57.5
Q ss_pred CCCHHHHhHH----hhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 013173 167 KPTPVQRHAI----PISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVE 242 (448)
Q Consensus 167 ~pt~~Q~~~i----~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~ 242 (448)
.|+|.|.+.+ ..+..+.++++.||||+|||++|++|++..+...+.. ....+++|.++|..+..|....
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~-------~~~~kvi~~t~T~~~~~q~i~~ 80 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER-------IQKIKLIYLSRTVSEIEKRLEE 80 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc-------ccccceeEEeccHHHHHHHHHH
Confidence 4799999955 4555789999999999999999999999876643311 0123589999999999998888
Q ss_pred HHHh
Q 013173 243 AKKF 246 (448)
Q Consensus 243 ~~~~ 246 (448)
++++
T Consensus 81 l~~~ 84 (289)
T smart00488 81 LRKL 84 (289)
T ss_pred HHhc
Confidence 8765
No 133
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.02 E-value=2.5e-08 Score=106.52 Aligned_cols=127 Identities=21% Similarity=0.179 Sum_probs=95.8
Q ss_pred CCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013173 167 KPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF 246 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~ 246 (448)
.|+++|.-.--.+..|+ |+...||=|||++..+|++-..+... .|-|+...--||..=++.+..+
T Consensus 78 r~ydVQliGglvLh~G~--IAEMkTGEGKTLvAtLpayLnAL~Gk-------------gVhVVTvNdYLA~RDae~mg~v 142 (925)
T PRK12903 78 RPYDVQIIGGIILDLGS--VAEMKTGEGKTITSIAPVYLNALTGK-------------GVIVSTVNEYLAERDAEEMGKV 142 (925)
T ss_pred CcCchHHHHHHHHhcCC--eeeecCCCCccHHHHHHHHHHHhcCC-------------ceEEEecchhhhhhhHHHHHHH
Confidence 78888888776666664 79999999999999999865443322 2778888888998888888888
Q ss_pred cccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHH-HHHHhccc------ccCCCeeEEEEcCCcccc
Q 013173 247 SYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRL-VDLLERAR------VSLQMIRYLALDEADRML 310 (448)
Q Consensus 247 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l-~~~l~~~~------~~l~~v~~lVlDEah~ll 310 (448)
...+|+.|.++..+....... -.-.|||+++|..-| .|+|+..- .....+.|.||||+|.+|
T Consensus 143 y~fLGLsvG~i~~~~~~~~rr--~aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSIL 211 (925)
T PRK12903 143 FNFLGLSVGINKANMDPNLKR--EAYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSIL 211 (925)
T ss_pred HHHhCCceeeeCCCCChHHHH--HhccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchhee
Confidence 888999999888776654332 233589999998876 45554321 224677899999999875
No 134
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.01 E-value=4e-08 Score=97.49 Aligned_cols=260 Identities=14% Similarity=0.060 Sum_probs=146.8
Q ss_pred CCCcccCCCCHHHHHHHHHCCCCCCCHHHHhH-HhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCC
Q 013173 144 VNTFAEIDLGEALNLNIRRCKYVKPTPVQRHA-IPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTV 222 (448)
Q Consensus 144 ~~~f~~l~L~~~l~~~l~~~~~~~pt~~Q~~~-i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~ 222 (448)
++.|...+.++.-...+++- -.-|-=-|++- +..+.+++-+++++.||||||+..-..++...+...
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R-~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~----------- 91 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKR-RELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHL----------- 91 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHH-hcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhc-----------
Confidence 67888999998887777752 22343344544 456668888999999999999954333333332211
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEE
Q 013173 223 YPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLA 302 (448)
Q Consensus 223 ~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lV 302 (448)
..+.+..|.|.-|.+++.....- .++....-.|-.-..+.. .....=+-++|-|.|+.-..... .+....++|
T Consensus 92 -~~v~CTQprrvaamsva~RVadE---MDv~lG~EVGysIrfEdC--~~~~T~Lky~tDgmLlrEams~p-~l~~y~vii 164 (699)
T KOG0925|consen 92 -TGVACTQPRRVAAMSVAQRVADE---MDVTLGEEVGYSIRFEDC--TSPNTLLKYCTDGMLLREAMSDP-LLGRYGVII 164 (699)
T ss_pred -cceeecCchHHHHHHHHHHHHHH---hccccchhcccccccccc--CChhHHHHHhcchHHHHHHhhCc-ccccccEEE
Confidence 23888999999998876655432 222221111110000000 00000122566666665544443 378899999
Q ss_pred EcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEecccccccCceeEEEEEeccc
Q 013173 303 LDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHES 382 (448)
Q Consensus 303 lDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~ 382 (448)
|||||.-.- -.+.+.-+++..... +++.++|.+|||+...- ...|..|.-.+.|.- ...+..+|..-.+.
T Consensus 165 LDeahERtl--ATDiLmGllk~v~~~-rpdLk~vvmSatl~a~K---fq~yf~n~Pll~vpg----~~PvEi~Yt~e~er 234 (699)
T KOG0925|consen 165 LDEAHERTL--ATDILMGLLKEVVRN-RPDLKLVVMSATLDAEK---FQRYFGNAPLLAVPG----THPVEIFYTPEPER 234 (699)
T ss_pred echhhhhhH--HHHHHHHHHHHHHhh-CCCceEEEeecccchHH---HHHHhCCCCeeecCC----CCceEEEecCCCCh
Confidence 999995421 012233334333222 24788999999986542 235555655555521 22233333333334
Q ss_pred chHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHC---------CCCeEEec
Q 013173 383 DKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN---------GFPATTIH 435 (448)
Q Consensus 383 ~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~---------g~~~~~iH 435 (448)
+-.+..+..+...-.... .+-+|||....++.+..++.+... -++|..+|
T Consensus 235 DylEaairtV~qih~~ee---~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy 293 (699)
T KOG0925|consen 235 DYLEAAIRTVLQIHMCEE---PGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY 293 (699)
T ss_pred hHHHHHHHHHHHHHhccC---CCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC
Confidence 444444444433322222 556999999999888888877532 25677777
No 135
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=98.98 E-value=1.8e-08 Score=107.96 Aligned_cols=62 Identities=23% Similarity=0.247 Sum_probs=52.5
Q ss_pred ccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCCHHHHHHhh
Q 013173 381 ESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 381 ~~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
...+...|++.+..... ++.++||||+|++.|+.|+++|...|+++..+||++++.+|.+++
T Consensus 424 ~~~qi~~Ll~eI~~~~~-----~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l 485 (655)
T TIGR00631 424 TDGQVDDLLSEIRQRVA-----RNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEII 485 (655)
T ss_pred ccchHHHHHHHHHHHHc-----CCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHH
Confidence 34556677777766542 277899999999999999999999999999999999999998876
No 136
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.98 E-value=2.3e-08 Score=102.68 Aligned_cols=236 Identities=15% Similarity=0.114 Sum_probs=133.6
Q ss_pred hHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH-hcccCCcEEEE
Q 013173 178 ISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK-FSYQTGVKVVV 256 (448)
Q Consensus 178 ~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~-~~~~~~~~~~~ 256 (448)
.|-.++-+++++.||||||+. +| +.|+..+... ...+-|..|.|.-|..++..+.. +....|-.|..
T Consensus 367 ~ir~n~vvvivgETGSGKTTQ--l~--QyL~edGY~~--------~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGY 434 (1042)
T KOG0924|consen 367 VIRENQVVVIVGETGSGKTTQ--LA--QYLYEDGYAD--------NGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGY 434 (1042)
T ss_pred HHhhCcEEEEEecCCCCchhh--hH--HHHHhccccc--------CCeeeecCchHHHHHHHHHHHHHHhCCccccccce
Confidence 344567799999999999995 33 4455554432 23467788999999998877764 32222322221
Q ss_pred --EECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcE
Q 013173 257 --AYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQ 334 (448)
Q Consensus 257 --~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q 334 (448)
.+..... ...-|=+.|-|.|+.-..... +|...+.||+||||.-.-. .+.+.-|++... ....+..
T Consensus 435 sIRFEdvT~--------~~T~IkymTDGiLLrEsL~d~-~L~kYSviImDEAHERslN--tDilfGllk~~l-arRrdlK 502 (1042)
T KOG0924|consen 435 SIRFEDVTS--------EDTKIKYMTDGILLRESLKDR-DLDKYSVIIMDEAHERSLN--TDILFGLLKKVL-ARRRDLK 502 (1042)
T ss_pred EEEeeecCC--------CceeEEEeccchHHHHHhhhh-hhhheeEEEechhhhcccc--hHHHHHHHHHHH-Hhhccce
Confidence 1111110 124578999999987544333 4788899999999965221 112222222221 1134678
Q ss_pred EEEEeccCchHHHHHHHhhhcCcEEEEecccccccCceeEEEEEecccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCch
Q 013173 335 TMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETK 414 (448)
Q Consensus 335 ~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~ 414 (448)
+|..|||+.. +.++.-|-.-|.+..-++. . .+...|...+-++=.++.+ .....-+..+..+-+|||..-.
T Consensus 503 liVtSATm~a--~kf~nfFgn~p~f~IpGRT---y-PV~~~~~k~p~eDYVeaav---kq~v~Ihl~~~~GdilIfmtGq 573 (1042)
T KOG0924|consen 503 LIVTSATMDA--QKFSNFFGNCPQFTIPGRT---Y-PVEIMYTKTPVEDYVEAAV---KQAVQIHLSGPPGDILIFMTGQ 573 (1042)
T ss_pred EEEeeccccH--HHHHHHhCCCceeeecCCc---c-ceEEEeccCchHHHHHHHH---hhheEeeccCCCCCEEEecCCC
Confidence 9999999875 4555555445555443322 1 1222333333333222222 2211112222356699999887
Q ss_pred hhHHHHH----HHHHHC------CCCeEEecCCCCHHHHHHh
Q 013173 415 KGADALE----HWLYMN------GFPATTIHGDRTQQRTSIE 446 (448)
Q Consensus 415 ~~a~~l~----~~L~~~------g~~~~~iHg~~~q~eR~~~ 446 (448)
+..+..+ +.|.+. ++.+..|++.|++.-..++
T Consensus 574 ediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~ki 615 (1042)
T KOG0924|consen 574 EDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKI 615 (1042)
T ss_pred cchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhh
Confidence 7555444 444332 5778899999988755544
No 137
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=98.97 E-value=4.6e-09 Score=102.28 Aligned_cols=146 Identities=21% Similarity=0.186 Sum_probs=84.5
Q ss_pred CCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECC
Q 013173 181 GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGG 260 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg 260 (448)
..+..+++-.+|+|||+..+.. +..+...... ...-.+|||+|. .+..|...++.++.....+++..+.+.
T Consensus 24 ~~~g~lL~de~GlGKT~~~i~~-~~~l~~~~~~-------~~~~~~LIv~P~-~l~~~W~~E~~~~~~~~~~~v~~~~~~ 94 (299)
T PF00176_consen 24 PPRGGLLADEMGLGKTITAIAL-ISYLKNEFPQ-------RGEKKTLIVVPS-SLLSQWKEEIEKWFDPDSLRVIIYDGD 94 (299)
T ss_dssp TT-EEEE---TTSSHHHHHHHH-HHHHHHCCTT-------SS-S-EEEEE-T-TTHHHHHHHHHHHSGT-TS-EEEESSS
T ss_pred CCCCEEEEECCCCCchhhhhhh-hhhhhhcccc-------ccccceeEeecc-chhhhhhhhhccccccccccccccccc
Confidence 3466999999999999886543 3333332211 111139999999 888899999999986545677665555
Q ss_pred CChHHHHHHHhcCccEEEeChHHHHHHHhc---ccccCCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEE
Q 013173 261 APINQQLRELERGVDILVATPGRLVDLLER---ARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTML 337 (448)
Q Consensus 261 ~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~---~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~ 337 (448)
..............+|+|+|.+.+...... ..+.--+.++||+||+|.+-... ......+..+. ....++
T Consensus 95 ~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~--s~~~~~l~~l~-----~~~~~l 167 (299)
T PF00176_consen 95 SERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKD--SKRYKALRKLR-----ARYRWL 167 (299)
T ss_dssp CHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTT--SHHHHHHHCCC-----ECEEEE
T ss_pred cccccccccccccceeeeccccccccccccccccccccccceeEEEeccccccccc--ccccccccccc-----cceEEe
Confidence 412222222233579999999999811100 11112348999999999984332 33444455452 345789
Q ss_pred EeccC
Q 013173 338 FSATF 342 (448)
Q Consensus 338 ~SAT~ 342 (448)
+|||.
T Consensus 168 LSgTP 172 (299)
T PF00176_consen 168 LSGTP 172 (299)
T ss_dssp E-SS-
T ss_pred ecccc
Confidence 99995
No 138
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.87 E-value=2.3e-08 Score=111.77 Aligned_cols=64 Identities=19% Similarity=0.151 Sum_probs=51.7
Q ss_pred CCCCHHHHhHHhhH----hCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHH
Q 013173 166 VKPTPVQRHAIPIS----IGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHV 241 (448)
Q Consensus 166 ~~pt~~Q~~~i~~i----~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~ 241 (448)
.+++|-|.+.+..+ ..++++++.|+||+|||++|++|++...... +-++||-++|+.|-.|+..
T Consensus 256 ~e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~~~------------~~~vvIsT~T~~LQ~Ql~~ 323 (928)
T PRK08074 256 YEKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAKKK------------EEPVVISTYTIQLQQQLLE 323 (928)
T ss_pred CcCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhhcc------------CCeEEEEcCCHHHHHHHHH
Confidence 38999999866543 3678899999999999999999998654322 1349999999999999865
No 139
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=98.80 E-value=3.9e-07 Score=95.42 Aligned_cols=142 Identities=18% Similarity=0.198 Sum_probs=89.4
Q ss_pred CCCHHHHhHHhhHh----CCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 013173 167 KPTPVQRHAIPISI----GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVE 242 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~----~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~ 242 (448)
++.++|+..+..+. ++.--|+--..|-|||... +..|..+.+... ....||||||..- +.|...+
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQi-isFLaaL~~S~k---------~~~paLIVCP~Ti-i~qW~~E 273 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQI-ISFLAALHHSGK---------LTKPALIVCPATI-IHQWMKE 273 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhH-HHHHHHHhhccc---------ccCceEEEccHHH-HHHHHHH
Confidence 46789999988664 3455788889999999863 233444443321 1134999999765 4677888
Q ss_pred HHHhcccCCcEEEEEECCCCh--------HHHHHH-Hh----cCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCccc
Q 013173 243 AKKFSYQTGVKVVVAYGGAPI--------NQQLRE-LE----RGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRM 309 (448)
Q Consensus 243 ~~~~~~~~~~~~~~~~gg~~~--------~~~~~~-l~----~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~l 309 (448)
+..+. ..+++.++++..+. ...... +. ....|+|+|...+.- ....+.-....|+|+||.|++
T Consensus 274 ~~~w~--p~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~--~~d~l~~~~W~y~ILDEGH~I 349 (923)
T KOG0387|consen 274 FQTWW--PPFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRI--QGDDLLGILWDYVILDEGHRI 349 (923)
T ss_pred HHHhC--cceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcc--cCcccccccccEEEecCcccc
Confidence 88875 35788888776552 111111 11 134799999876632 223344456789999999988
Q ss_pred ccCCCHHHHHHHHHHc
Q 013173 310 LDMGFEPQIRKIVQQM 325 (448)
Q Consensus 310 l~~gf~~~i~~i~~~l 325 (448)
-... .++...+..+
T Consensus 350 rNpn--s~islackki 363 (923)
T KOG0387|consen 350 RNPN--SKISLACKKI 363 (923)
T ss_pred cCCc--cHHHHHHHhc
Confidence 6543 3344444444
No 140
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=98.79 E-value=2.2e-07 Score=101.28 Aligned_cols=169 Identities=22% Similarity=0.172 Sum_probs=98.8
Q ss_pred CHHHHhHHhhHhC----CCC----eeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHH
Q 013173 169 TPVQRHAIPISIG----GRD----LMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIH 240 (448)
Q Consensus 169 t~~Q~~~i~~i~~----g~d----~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~ 240 (448)
..+|-.|+..+.. ..+ ++-.|.||||||++=.= |+..+..+ ..+++..|-.-.|.|-.|.-
T Consensus 410 F~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNAR-ImyaLsd~----------~~g~RfsiALGLRTLTLQTG 478 (1110)
T TIGR02562 410 FRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANAR-AMYALRDD----------KQGARFAIALGLRSLTLQTG 478 (1110)
T ss_pred cchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHH-HHHHhCCC----------CCCceEEEEccccceeccch
Confidence 4589999987654 211 67789999999997432 33333222 33456666677777777777
Q ss_pred HHHHHhcccCCcEEEEEECCCChHHHHH-------------------------------------------HHhc-----
Q 013173 241 VEAKKFSYQTGVKVVVAYGGAPINQQLR-------------------------------------------ELER----- 272 (448)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~gg~~~~~~~~-------------------------------------------~l~~----- 272 (448)
+.+++-..-..-...+++|+..+.+-.. .+.+
T Consensus 479 da~r~rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~ 558 (1110)
T TIGR02562 479 HALKTRLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEK 558 (1110)
T ss_pred HHHHHhcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhh
Confidence 7666543322334444455433222111 0000
Q ss_pred ---CccEEEeChHHHHHHHhccc---ccCC--C--eeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccC
Q 013173 273 ---GVDILVATPGRLVDLLERAR---VSLQ--M--IRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATF 342 (448)
Q Consensus 273 ---~~~Ilv~Tp~~l~~~l~~~~---~~l~--~--v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~ 342 (448)
...|+|||++.++-.....+ ..+. . =+.|||||+|.+-. .....|..++..+.. ....++++|||+
T Consensus 559 rll~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~-~~~~~L~rlL~w~~~---lG~~VlLmSATL 634 (1110)
T TIGR02562 559 TLLAAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEP-EDLPALLRLVQLAGL---LGSRVLLSSATL 634 (1110)
T ss_pred hhhcCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCH-HHHHHHHHHHHHHHH---cCCCEEEEeCCC
Confidence 13799999999988763211 1111 1 25699999996632 222445555553322 245699999999
Q ss_pred chHHHHHHHh
Q 013173 343 PKEIQRLASD 352 (448)
Q Consensus 343 ~~~v~~l~~~ 352 (448)
|+.+...+..
T Consensus 635 P~~l~~~L~~ 644 (1110)
T TIGR02562 635 PPALVKTLFR 644 (1110)
T ss_pred CHHHHHHHHH
Confidence 9988654444
No 141
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.71 E-value=1.6e-07 Score=94.77 Aligned_cols=270 Identities=9% Similarity=-0.074 Sum_probs=172.2
Q ss_pred HHHHCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHH
Q 013173 159 NIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQ 238 (448)
Q Consensus 159 ~l~~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~q 238 (448)
.+..+-......+|.++|..+..|+++++.-.|.+||.++|.+..+..+..... -..+++.||.+++..
T Consensus 278 ~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~-----------s~~~~~~~~~~~~~~ 346 (1034)
T KOG4150|consen 278 LLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCHA-----------TNSLLPSEMVEHLRN 346 (1034)
T ss_pred HHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCcc-----------cceecchhHHHHhhc
Confidence 344455667889999999999999999999999999999999988876654321 236889999999876
Q ss_pred HHHHHHHhc-ccC--CcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcc----cccCCCeeEEEEcCCccccc
Q 013173 239 IHVEAKKFS-YQT--GVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA----RVSLQMIRYLALDEADRMLD 311 (448)
Q Consensus 239 i~~~~~~~~-~~~--~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~----~~~l~~v~~lVlDEah~ll~ 311 (448)
....+.-.. ... .--++-.+.+.+........+.+.++|++.|......+.-+ ...+-...++++||+|..+-
T Consensus 347 ~~~~~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~ 426 (1034)
T KOG4150|consen 347 GSKGQVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLF 426 (1034)
T ss_pred cCCceEEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeec
Confidence 544332211 111 11233345555555555666778999999999887655332 23344567899999998754
Q ss_pred CC---CHHHHHHHHHHcCCC-CCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEecccccccCceeEEEEEecc------
Q 013173 312 MG---FEPQIRKIVQQMDMP-PPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHE------ 381 (448)
Q Consensus 312 ~g---f~~~i~~i~~~l~~~-~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~------ 381 (448)
.- ...+++.++..+... .....|++-.|||+...++.+-.-+--+. +.....+.++..-.+.+.+.+.
T Consensus 427 ~~~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E--~~Li~~DGSPs~~K~~V~WNP~~~P~~~ 504 (1034)
T KOG4150|consen 427 PTKALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSE--LELVTIDGSPSSEKLFVLWNPSAPPTSK 504 (1034)
T ss_pred chhhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcc--eEEEEecCCCCccceEEEeCCCCCCcch
Confidence 31 234555555444211 13457899999999888876544333333 3333334444444455555432
Q ss_pred ---cchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHC----C----CCeEEecCCCCHHHHHHh
Q 013173 382 ---SDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN----G----FPATTIHGDRTQQRTSIE 446 (448)
Q Consensus 382 ---~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~----g----~~~~~iHg~~~q~eR~~~ 446 (448)
+.+......++...... +-++|-||.+++-|+.|....+.. + -.+.+|.|+-+.++|.++
T Consensus 505 ~~~~~~i~E~s~~~~~~i~~-----~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKI 575 (1034)
T KOG4150|consen 505 SEKSSKVVEVSHLFAEMVQH-----GLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKI 575 (1034)
T ss_pred hhhhhHHHHHHHHHHHHHHc-----CCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHH
Confidence 22233333444443332 667999999999999887655432 2 136678899998888765
No 142
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.70 E-value=1.4e-07 Score=89.81 Aligned_cols=130 Identities=20% Similarity=0.225 Sum_probs=96.2
Q ss_pred CCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q 013173 164 KYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEA 243 (448)
Q Consensus 164 ~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~ 243 (448)
--..|+++|.-++-.+..|+ |+...||=|||++..+|++-..+.. ..|=|++....||..=++.+
T Consensus 74 ~g~~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~G-------------~~V~vvT~NdyLA~RD~~~~ 138 (266)
T PF07517_consen 74 LGLRPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQG-------------KGVHVVTSNDYLAKRDAEEM 138 (266)
T ss_dssp TS----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTTS-------------S-EEEEESSHHHHHHHHHHH
T ss_pred cCCcccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHhc-------------CCcEEEeccHHHhhccHHHH
Confidence 34579999999987776666 9999999999999888877655433 23889999999999999999
Q ss_pred HHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHH-HHHhcc----cc--cCCCeeEEEEcCCcccc
Q 013173 244 KKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLV-DLLERA----RV--SLQMIRYLALDEADRML 310 (448)
Q Consensus 244 ~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~-~~l~~~----~~--~l~~v~~lVlDEah~ll 310 (448)
..|....|+.+.+++.+.+....... -.+||+++|...|. |+|... .. ......++||||||.++
T Consensus 139 ~~~y~~LGlsv~~~~~~~~~~~r~~~--Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 139 RPFYEFLGLSVGIITSDMSSEERREA--YAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HHHHHHTT--EEEEETTTEHHHHHHH--HHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HHHHHHhhhccccCccccCHHHHHHH--HhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 99999999999999998875433222 23789999999884 445332 11 24778999999999875
No 143
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.69 E-value=7.1e-07 Score=95.04 Aligned_cols=230 Identities=17% Similarity=0.199 Sum_probs=133.7
Q ss_pred CCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCC
Q 013173 183 RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAP 262 (448)
Q Consensus 183 ~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~ 262 (448)
.-+++.||.|||||.+..- .|...+.. ..-++|+|+..+.|+.++...++..... +... |....
T Consensus 50 ~V~vVRSpMGTGKTtaLi~-wLk~~l~~-----------~~~~VLvVShRrSL~~sL~~rf~~~~l~-gFv~---Y~d~~ 113 (824)
T PF02399_consen 50 GVLVVRSPMGTGKTTALIR-WLKDALKN-----------PDKSVLVVSHRRSLTKSLAERFKKAGLS-GFVN---YLDSD 113 (824)
T ss_pred CeEEEECCCCCCcHHHHHH-HHHHhccC-----------CCCeEEEEEhHHHHHHHHHHHHhhcCCC-ccee---eeccc
Confidence 3478999999999997533 33333211 1235999999999999999999875321 2111 11111
Q ss_pred hHHHHHHHh-cCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcccccCCCHHHHHH---HHHHcCCCCCCCcEEEEE
Q 013173 263 INQQLRELE-RGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRK---IVQQMDMPPPGMRQTMLF 338 (448)
Q Consensus 263 ~~~~~~~l~-~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~---i~~~l~~~~~~~~q~i~~ 338 (448)
. ..+. +..+-|++..+.|..+.. -.+.+.++|||||+...+..-|.+.+++ .++.+...-.....+|++
T Consensus 114 ~----~~i~~~~~~rLivqIdSL~R~~~---~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~ 186 (824)
T PF02399_consen 114 D----YIIDGRPYDRLIVQIDSLHRLDG---SLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVM 186 (824)
T ss_pred c----ccccccccCeEEEEehhhhhccc---ccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEe
Confidence 0 0111 124677777777755432 2367789999999998776533332222 122111111344579999
Q ss_pred eccCchHHHHHHHhhhcC-cEEEEecccccccCceeEEEEEec------------------------------------c
Q 013173 339 SATFPKEIQRLASDFLAN-YIFLAVGRVGSSTDLIVQRVEFVH------------------------------------E 381 (448)
Q Consensus 339 SAT~~~~v~~l~~~~l~~-~~~i~v~~~~~~~~~i~q~~~~~~------------------------------------~ 381 (448)
-||+.+..-+++..+..+ .+.+.+..-.. ..-.......+. .
T Consensus 187 DA~ln~~tvdFl~~~Rp~~~i~vI~n~y~~-~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (824)
T PF02399_consen 187 DADLNDQTVDFLASCRPDENIHVIVNTYAS-PGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAIS 265 (824)
T ss_pred cCCCCHHHHHHHHHhCCCCcEEEEEeeeec-CCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccc
Confidence 999999999999887543 33333321100 000000000000 0
Q ss_pred cchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCCHHH
Q 013173 382 SDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQR 442 (448)
Q Consensus 382 ~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~e 442 (448)
.+... .+..|..... .+..+-|||.|+..++.++++......++..++|+.+..+
T Consensus 266 ~~~~t-F~~~L~~~L~-----~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~d 320 (824)
T PF02399_consen 266 NDETT-FFSELLARLN-----AGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLED 320 (824)
T ss_pred cchhh-HHHHHHHHHh-----CCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccc
Confidence 11112 2223322221 1566789999999999999999988888999988776553
No 144
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=98.67 E-value=3.7e-07 Score=99.11 Aligned_cols=127 Identities=18% Similarity=0.125 Sum_probs=89.8
Q ss_pred CCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013173 167 KPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF 246 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~ 246 (448)
.|.++|--.--.+. +--|+...||=|||++..+|++-..+... -|-||...--||.-=.+.+..+
T Consensus 138 ~~ydVQLiGgivLh--~G~IAEM~TGEGKTLvatlp~yLnAL~G~-------------gVHvVTvNDYLA~RDaewm~p~ 202 (1025)
T PRK12900 138 VPYDVQLIGGIVLH--SGKISEMATGEGKTLVSTLPTFLNALTGR-------------GVHVVTVNDYLAQRDKEWMNPV 202 (1025)
T ss_pred cccchHHhhhHHhh--cCCccccCCCCCcchHhHHHHHHHHHcCC-------------CcEEEeechHhhhhhHHHHHHH
Confidence 36666655444443 44578999999999999999976555432 1566667777888778888888
Q ss_pred cccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHH-HHHHhccc------ccCCCeeEEEEcCCcccc
Q 013173 247 SYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRL-VDLLERAR------VSLQMIRYLALDEADRML 310 (448)
Q Consensus 247 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l-~~~l~~~~------~~l~~v~~lVlDEah~ll 310 (448)
....|+.|.++..+.+.. .+.-.-.|||+++|..-| .|+|..+- .-...+.|.||||+|-+|
T Consensus 203 y~flGLtVg~i~~~~~~~--~Rr~aY~~DItYgTn~EfGFDYLRDnma~~~~~~vqR~~~faIVDEvDSvL 271 (1025)
T PRK12900 203 FEFHGLSVGVILNTMRPE--ERREQYLCDITYGTNNEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEVDSVL 271 (1025)
T ss_pred HHHhCCeeeeeCCCCCHH--HHHHhCCCcceecCCCccccccchhccccchhhhhccCCceEEEechhhhh
Confidence 888899999886655543 344455699999998776 44443221 224667899999999775
No 145
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=98.66 E-value=7.6e-07 Score=95.96 Aligned_cols=61 Identities=25% Similarity=0.250 Sum_probs=52.0
Q ss_pred cchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCCHHHHHHhh
Q 013173 382 SDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 382 ~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
..+...|++.|..... .+.++||||+|++.|+.|++.|...|+++..+||++++.+|.+++
T Consensus 429 ~~q~~~L~~~L~~~~~-----~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l 489 (652)
T PRK05298 429 KGQVDDLLSEIRKRVA-----KGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEII 489 (652)
T ss_pred cccHHHHHHHHHHHHh-----CCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHH
Confidence 4456677777766543 267899999999999999999999999999999999999999876
No 146
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=98.65 E-value=7e-06 Score=87.74 Aligned_cols=160 Identities=18% Similarity=0.190 Sum_probs=105.3
Q ss_pred CCCHHHHhHHhhHh---CCC-------CeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHH
Q 013173 167 KPTPVQRHAIPISI---GGR-------DLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELS 236 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~---~g~-------d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~ 236 (448)
.++|.|++.+.-+. .|. -+|+.-..|+|||+.. ++.|..+++..+... ..-.++|||+|. .|+
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~-IsflwtlLrq~P~~~-----~~~~k~lVV~P~-sLv 310 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQC-ISFIWTLLRQFPQAK-----PLINKPLVVAPS-SLV 310 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHH-HHHHHHHHHhCcCcc-----ccccccEEEccH-HHH
Confidence 57899999987543 232 2677778999999984 566666665543211 122458999995 567
Q ss_pred HHHHHHHHHhcccCCcEEEEEECCCCh--HHHHHHHh-----cCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCccc
Q 013173 237 SQIHVEAKKFSYQTGVKVVVAYGGAPI--NQQLRELE-----RGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRM 309 (448)
Q Consensus 237 ~qi~~~~~~~~~~~~~~~~~~~gg~~~--~~~~~~l~-----~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~l 309 (448)
.-..+++.++.....+....+++.... .....-+. ...-|++-+.+.+.+..+. +.+..+.+||+||.|++
T Consensus 311 ~nWkkEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~--il~~~~glLVcDEGHrl 388 (776)
T KOG0390|consen 311 NNWKKEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK--ILLIRPGLLVCDEGHRL 388 (776)
T ss_pred HHHHHHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH--HhcCCCCeEEECCCCCc
Confidence 788999999876556777777777663 11111111 1246788888888766653 34677899999999998
Q ss_pred ccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccC
Q 013173 310 LDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATF 342 (448)
Q Consensus 310 l~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~ 342 (448)
-.. ...+...+..++. . +-|++|.|+
T Consensus 389 kN~--~s~~~kaL~~l~t----~-rRVLLSGTp 414 (776)
T KOG0390|consen 389 KNS--DSLTLKALSSLKT----P-RRVLLTGTP 414 (776)
T ss_pred cch--hhHHHHHHHhcCC----C-ceEEeeCCc
Confidence 543 2456666666632 2 247788883
No 147
>PRK14873 primosome assembly protein PriA; Provisional
Probab=98.60 E-value=3e-07 Score=98.50 Aligned_cols=141 Identities=15% Similarity=0.124 Sum_probs=92.8
Q ss_pred EccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHH
Q 013173 188 CAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQL 267 (448)
Q Consensus 188 ~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~ 267 (448)
.+-+|||||.+|+-.+-..+ .. +.++|||+|...|..|+.+.++.... ...+.+++++.+..+..
T Consensus 166 ~~~~GSGKTevyl~~i~~~l-~~------------Gk~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~ 230 (665)
T PRK14873 166 QALPGEDWARRLAAAAAATL-RA------------GRGALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRY 230 (665)
T ss_pred hcCCCCcHHHHHHHHHHHHH-Hc------------CCeEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHH
Confidence 33469999999976554333 22 23599999999999999999987542 25678888888766554
Q ss_pred HHH---hcC-ccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcccc---cCCCHHHHHHHHHHcCCCCCCCcEEEEEec
Q 013173 268 REL---ERG-VDILVATPGRLVDLLERARVSLQMIRYLALDEADRML---DMGFEPQIRKIVQQMDMPPPGMRQTMLFSA 340 (448)
Q Consensus 268 ~~l---~~~-~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll---~~gf~~~i~~i~~~l~~~~~~~~q~i~~SA 340 (448)
+.+ ..| ..|+|+|-.-+ ...+.++.++||||=|--. +.+..-+.+.+...... .....+|+-||
T Consensus 231 ~~w~~~~~G~~~IViGtRSAv-------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~--~~~~~lvLgSa 301 (665)
T PRK14873 231 RRWLAVLRGQARVVVGTRSAV-------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAH--QHGCALLIGGH 301 (665)
T ss_pred HHHHHHhCCCCcEEEEcceeE-------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHH--HcCCcEEEECC
Confidence 433 334 79999995433 2368999999999998432 11122223333222211 23467999999
Q ss_pred cCchHHHHHHHh
Q 013173 341 TFPKEIQRLASD 352 (448)
Q Consensus 341 T~~~~v~~l~~~ 352 (448)
|.+-+....+..
T Consensus 302 TPSles~~~~~~ 313 (665)
T PRK14873 302 ARTAEAQALVES 313 (665)
T ss_pred CCCHHHHHHHhc
Confidence 998777655543
No 148
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.56 E-value=9.6e-09 Score=109.93 Aligned_cols=148 Identities=22% Similarity=0.293 Sum_probs=111.3
Q ss_pred CCCCCHHHHhHHhhHh-CCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q 013173 165 YVKPTPVQRHAIPISI-GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEA 243 (448)
Q Consensus 165 ~~~pt~~Q~~~i~~i~-~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~ 243 (448)
+..+.|+|...+-.+. -..++++-+|||+|||.+|.+.++..+...+ ..++++++|..+|+..-.+..
T Consensus 925 ~~~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p-----------~~kvvyIap~kalvker~~Dw 993 (1230)
T KOG0952|consen 925 YKYFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYP-----------GSKVVYIAPDKALVKERSDDW 993 (1230)
T ss_pred hcccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCC-----------CccEEEEcCCchhhcccccch
Confidence 3356778887775544 4578999999999999999998876654432 246999999999999998888
Q ss_pred HHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhc--ccccCCCeeEEEEcCCcccccCCCHHHHHHH
Q 013173 244 KKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLER--ARVSLQMIRYLALDEADRMLDMGFEPQIRKI 321 (448)
Q Consensus 244 ~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~--~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i 321 (448)
.+.....+++++-+.|...... ..+. ..+|+|+||+++..+... ..-.+.+|+.+|+||.|++.+ +..+.++.|
T Consensus 994 ~~r~~~~g~k~ie~tgd~~pd~--~~v~-~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~-~rgPVle~i 1069 (1230)
T KOG0952|consen 994 SKRDELPGIKVIELTGDVTPDV--KAVR-EADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGE-DRGPVLEVI 1069 (1230)
T ss_pred hhhcccCCceeEeccCccCCCh--hhee-cCceEEcccccccCccccccchhhhccccceeecccccccC-CCcceEEEE
Confidence 8776666899999888776552 2222 379999999999888763 334588999999999998765 334655555
Q ss_pred HHHcCC
Q 013173 322 VQQMDM 327 (448)
Q Consensus 322 ~~~l~~ 327 (448)
....+.
T Consensus 1070 vsr~n~ 1075 (1230)
T KOG0952|consen 1070 VSRMNY 1075 (1230)
T ss_pred eecccc
Confidence 555543
No 149
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=98.56 E-value=2.6e-07 Score=100.54 Aligned_cols=152 Identities=20% Similarity=0.281 Sum_probs=99.7
Q ss_pred CCCCHHHHhHHhhHh----CCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHH
Q 013173 166 VKPTPVQRHAIPISI----GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHV 241 (448)
Q Consensus 166 ~~pt~~Q~~~i~~i~----~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~ 241 (448)
.+++.+|-.-+..++ ++.++|+.-..|-|||+.- +..|..|++... ..+| -|||+|.-.+... ..
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqt-i~fl~~l~~~~~--------~~gp-flvvvplst~~~W-~~ 437 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQT-ITFLSYLFHSLQ--------IHGP-FLVVVPLSTITAW-ER 437 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHH-HHHHHHHHHhhh--------ccCC-eEEEeehhhhHHH-HH
Confidence 468889999888654 6789999999999999863 344555544321 1223 5888898776554 55
Q ss_pred HHHHhcccCCcEEEEEECCCChHHHHHHHhc---------CccEEEeChHHHHHHHhcccccCC--CeeEEEEcCCcccc
Q 013173 242 EAKKFSYQTGVKVVVAYGGAPINQQLRELER---------GVDILVATPGRLVDLLERARVSLQ--MIRYLALDEADRML 310 (448)
Q Consensus 242 ~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~---------~~~Ilv~Tp~~l~~~l~~~~~~l~--~v~~lVlDEah~ll 310 (448)
++..++ .+++++++|.....+.++..+- ..++|++|.+.++.- +-.|+ ...+++|||||+|-
T Consensus 438 ef~~w~---~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkD----k~~L~~i~w~~~~vDeahrLk 510 (1373)
T KOG0384|consen 438 EFETWT---DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKD----KAELSKIPWRYLLVDEAHRLK 510 (1373)
T ss_pred HHHHHh---hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhcc----HhhhccCCcceeeecHHhhcC
Confidence 566654 6788888888766655544321 368999998887532 22233 34789999999996
Q ss_pred cCCCHHHHHHHHHHcCCCCCCCcEEEEEeccC
Q 013173 311 DMGFEPQIRKIVQQMDMPPPGMRQTMLFSATF 342 (448)
Q Consensus 311 ~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~ 342 (448)
.. ...+...+..+.+. . -|++|.|.
T Consensus 511 N~--~~~l~~~l~~f~~~----~-rllitgTP 535 (1373)
T KOG0384|consen 511 ND--ESKLYESLNQFKMN----H-RLLITGTP 535 (1373)
T ss_pred ch--HHHHHHHHHHhccc----c-eeeecCCC
Confidence 42 24444555555322 1 36677773
No 150
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.54 E-value=6.8e-07 Score=97.05 Aligned_cols=63 Identities=30% Similarity=0.287 Sum_probs=49.4
Q ss_pred CCCCHHHHhHHhhHh---CC------CCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHH
Q 013173 166 VKPTPVQRHAIPISI---GG------RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELS 236 (448)
Q Consensus 166 ~~pt~~Q~~~i~~i~---~g------~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~ 236 (448)
.++++-|.+.+..+. .+ +.++|.|+||+|||++|++|++......+ -++||=+.|+.|=
T Consensus 24 ~e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~~~------------k~vVIST~T~~LQ 91 (697)
T PRK11747 24 FIPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARAEK------------KKLVISTATVALQ 91 (697)
T ss_pred CCcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHHcC------------CeEEEEcCCHHHH
Confidence 379999998665443 33 67999999999999999999986554322 2489999999999
Q ss_pred HHHH
Q 013173 237 SQIH 240 (448)
Q Consensus 237 ~qi~ 240 (448)
.|+.
T Consensus 92 eQL~ 95 (697)
T PRK11747 92 EQLV 95 (697)
T ss_pred HHHH
Confidence 9985
No 151
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.48 E-value=9.6e-07 Score=96.39 Aligned_cols=74 Identities=20% Similarity=0.156 Sum_probs=58.0
Q ss_pred CCCCCCCHHHHhHHhh----HhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHH
Q 013173 163 CKYVKPTPVQRHAIPI----SIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQ 238 (448)
Q Consensus 163 ~~~~~pt~~Q~~~i~~----i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~q 238 (448)
+.|..++|.|.+.+.. +..+.++++.+|||+|||++.+.|+|..+.+.+ ..+++++.+.|..=..|
T Consensus 6 FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~----------~~~kIiy~sRThsQl~q 75 (705)
T TIGR00604 6 FPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKP----------EVRKIIYASRTHSQLEQ 75 (705)
T ss_pred cCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcc----------ccccEEEEcccchHHHH
Confidence 4566779999988764 446889999999999999999999998765432 12457888888887788
Q ss_pred HHHHHHHh
Q 013173 239 IHVEAKKF 246 (448)
Q Consensus 239 i~~~~~~~ 246 (448)
+.++++++
T Consensus 76 ~i~Elk~~ 83 (705)
T TIGR00604 76 ATEELRKL 83 (705)
T ss_pred HHHHHHhh
Confidence 88888774
No 152
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.42 E-value=1.2e-06 Score=95.05 Aligned_cols=75 Identities=28% Similarity=0.348 Sum_probs=59.5
Q ss_pred HHHCCCCCCCHHHHhHHhhH----hCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHH
Q 013173 160 IRRCKYVKPTPVQRHAIPIS----IGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTREL 235 (448)
Q Consensus 160 l~~~~~~~pt~~Q~~~i~~i----~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL 235 (448)
...+.+.+|++.|.+.+..+ ..++.+++.||||+|||++|++|++......+ ..++|.++|+.|
T Consensus 8 ~~~~~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~~------------~~viist~t~~l 75 (654)
T COG1199 8 AVAFPGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREEG------------KKVIISTRTKAL 75 (654)
T ss_pred HhhCCCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHcC------------CcEEEECCCHHH
Confidence 34456778999999988543 34566999999999999999999998765543 348999999999
Q ss_pred HHHHHHHHHHh
Q 013173 236 SSQIHVEAKKF 246 (448)
Q Consensus 236 ~~qi~~~~~~~ 246 (448)
-.|+.++...+
T Consensus 76 q~q~~~~~~~~ 86 (654)
T COG1199 76 QEQLLEEDLPI 86 (654)
T ss_pred HHHHHHhhcch
Confidence 99988776553
No 153
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.35 E-value=2.1e-06 Score=93.92 Aligned_cols=143 Identities=20% Similarity=0.238 Sum_probs=85.1
Q ss_pred CCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH------hc---ccCCcE
Q 013173 183 RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK------FS---YQTGVK 253 (448)
Q Consensus 183 ~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~------~~---~~~~~~ 253 (448)
.++.+.++||+|||.+|+-.|+......+ ..+.||+||+.+.-..+...+.. |. ....++
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~~-----------~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~ 128 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKYG-----------LFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIE 128 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHcC-----------CcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeE
Confidence 47999999999999999887766543322 23589999999988777655441 11 122344
Q ss_pred EEEEECCC-------ChHHHHHHHhc-------CccEEEeChHHHHHHHh--c--------cc-cc---CCCe-eEEEEc
Q 013173 254 VVVAYGGA-------PINQQLRELER-------GVDILVATPGRLVDLLE--R--------AR-VS---LQMI-RYLALD 304 (448)
Q Consensus 254 ~~~~~gg~-------~~~~~~~~l~~-------~~~Ilv~Tp~~l~~~l~--~--------~~-~~---l~~v-~~lVlD 304 (448)
..++.++. +...+++.... .++|+|.|-+.|..-.. . +. .. +... -+||+|
T Consensus 129 ~~~~~S~k~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiD 208 (986)
T PRK15483 129 LYVINAGDKKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIID 208 (986)
T ss_pred EEEEecCcccccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEE
Confidence 44444332 11223332222 47899999998854211 0 00 11 1111 368999
Q ss_pred CCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCch
Q 013173 305 EADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPK 344 (448)
Q Consensus 305 Eah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~ 344 (448)
|.|++-..+ ..+..| ..+ .+.. ++.||||++.
T Consensus 209 EPh~~~~~~--k~~~~i-~~l----npl~-~lrysAT~~~ 240 (986)
T PRK15483 209 EPHRFPRDN--KFYQAI-EAL----KPQM-IIRFGATFPD 240 (986)
T ss_pred CCCCCCcch--HHHHHH-Hhc----Cccc-EEEEeeecCC
Confidence 999984422 233333 444 2222 6889999987
No 154
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.34 E-value=1e-05 Score=88.46 Aligned_cols=157 Identities=20% Similarity=0.252 Sum_probs=100.4
Q ss_pred CHHHHhHHhhHh--C--CCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q 013173 169 TPVQRHAIPISI--G--GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAK 244 (448)
Q Consensus 169 t~~Q~~~i~~i~--~--g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~ 244 (448)
+.||++-+..+. + +-+-|+|-..|-|||+..+-.+-....+.+. ........-.|||||. .|+--...++.
T Consensus 977 RkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s----~~~e~~~~PSLIVCPs-TLtGHW~~E~~ 1051 (1549)
T KOG0392|consen 977 RKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRS----ESSEFNRLPSLIVCPS-TLTGHWKSEVK 1051 (1549)
T ss_pred HHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcc----cchhhccCCeEEECCc-hhhhHHHHHHH
Confidence 457999987653 2 3478999999999999754433333333211 1112233338999995 57788889999
Q ss_pred HhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcccccCCCHHHHHHHHHH
Q 013173 245 KFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQ 324 (448)
Q Consensus 245 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~ 324 (448)
+|+.. +++....|+.......+.--+..+|+|++.+.+.+-+.. +.-...-|+|+||-|-|-.. ...+.+.++.
T Consensus 1052 kf~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~--l~~~~wNYcVLDEGHVikN~--ktkl~kavkq 1125 (1549)
T KOG0392|consen 1052 KFFPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY--LIKIDWNYCVLDEGHVIKNS--KTKLTKAVKQ 1125 (1549)
T ss_pred Hhcch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH--HHhcccceEEecCcceecch--HHHHHHHHHH
Confidence 98765 666666666554444554444579999999988654331 11234568999999977442 3445556666
Q ss_pred cCCCCCCCcEEEEEecc
Q 013173 325 MDMPPPGMRQTMLFSAT 341 (448)
Q Consensus 325 l~~~~~~~~q~i~~SAT 341 (448)
+ .... -+++|.|
T Consensus 1126 L----~a~h-RLILSGT 1137 (1549)
T KOG0392|consen 1126 L----RANH-RLILSGT 1137 (1549)
T ss_pred H----hhcc-eEEeeCC
Confidence 6 2222 3567777
No 155
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=98.27 E-value=1.3e-05 Score=80.22 Aligned_cols=254 Identities=15% Similarity=0.184 Sum_probs=143.4
Q ss_pred CCCCHHHHhHHhhHh-CCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q 013173 166 VKPTPVQRHAIPISI-GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAK 244 (448)
Q Consensus 166 ~~pt~~Q~~~i~~i~-~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~ 244 (448)
..+-|+|.+-+...+ .|--+++.-..|-|||..++- +..++...- -.||+||..-+ ....+.+.
T Consensus 197 s~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAla--IA~yyraEw------------plliVcPAsvr-ftWa~al~ 261 (689)
T KOG1000|consen 197 SRLLPFQREGVIFALERGGRILLADEMGLGKTIQALA--IARYYRAEW------------PLLIVCPASVR-FTWAKALN 261 (689)
T ss_pred HhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHH--HHHHHhhcC------------cEEEEecHHHh-HHHHHHHH
Confidence 346789999988766 677788999999999997653 333333221 17999997655 44577777
Q ss_pred HhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcccccCCCHHHHHHHHHH
Q 013173 245 KFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQ 324 (448)
Q Consensus 245 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~ 324 (448)
+|.... ..+.++.++...... +-...-|.|.+.+.|..+-. .+.-....+||+||.|+|-+.- ...++.++..
T Consensus 262 r~lps~-~pi~vv~~~~D~~~~---~~t~~~v~ivSye~ls~l~~--~l~~~~~~vvI~DEsH~Lk~sk-tkr~Ka~~dl 334 (689)
T KOG1000|consen 262 RFLPSI-HPIFVVDKSSDPLPD---VCTSNTVAIVSYEQLSLLHD--ILKKEKYRVVIFDESHMLKDSK-TKRTKAATDL 334 (689)
T ss_pred Hhcccc-cceEEEecccCCccc---cccCCeEEEEEHHHHHHHHH--HHhcccceEEEEechhhhhccc-hhhhhhhhhH
Confidence 775322 225555555442211 11224678888877654322 1123447889999999875532 2224444443
Q ss_pred cCCCCCCCcEEEEEeccC----chHH---------------HHHHHhhhcC-cEEEEecccc------------------
Q 013173 325 MDMPPPGMRQTMLFSATF----PKEI---------------QRLASDFLAN-YIFLAVGRVG------------------ 366 (448)
Q Consensus 325 l~~~~~~~~q~i~~SAT~----~~~v---------------~~l~~~~l~~-~~~i~v~~~~------------------ 366 (448)
+ .....+|++|.|. |.++ -+++..|+.- .+.+..+-.+
T Consensus 335 l----k~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIR 410 (689)
T KOG1000|consen 335 L----KVAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIR 410 (689)
T ss_pred H----HHhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHH
Confidence 3 3334588999984 2221 2222222210 0000000000
Q ss_pred -------cccCceeEEEEEecc--------------------------------------cchHHHHHHHHHHHHhcCCC
Q 013173 367 -------SSTDLIVQRVEFVHE--------------------------------------SDKRSHLMDLLHAQVANGVH 401 (448)
Q Consensus 367 -------~~~~~i~q~~~~~~~--------------------------------------~~k~~~L~~ll~~~~~~~~~ 401 (448)
..++.-.+.+.++.. ..|...+.+.|..++.- ..
T Consensus 411 RlK~dvL~qLPpKrr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l-~d 489 (689)
T KOG1000|consen 411 RLKADVLKQLPPKRREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFL-PD 489 (689)
T ss_pred HHHHHHHhhCCccceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCccc-cc
Confidence 000111223332211 01122222222221110 12
Q ss_pred CCCCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCCHHHHHHh
Q 013173 402 GKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIE 446 (448)
Q Consensus 402 ~~~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~ 446 (448)
....+.+|||.-...-+.+..+++..++.-+-|.|..+..+|.-+
T Consensus 490 ~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll 534 (689)
T KOG1000|consen 490 APPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLL 534 (689)
T ss_pred CCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHH
Confidence 346789999999999999999999999999999999999988743
No 156
>COG4889 Predicted helicase [General function prediction only]
Probab=98.18 E-value=1.2e-05 Score=85.29 Aligned_cols=136 Identities=24% Similarity=0.274 Sum_probs=88.1
Q ss_pred HHHHHCCCCCCCHHHHhHHhhHhCC-----CCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCc
Q 013173 158 LNIRRCKYVKPTPVQRHAIPISIGG-----RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPT 232 (448)
Q Consensus 158 ~~l~~~~~~~pt~~Q~~~i~~i~~g-----~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Pt 232 (448)
.++.-+.-.+|+|+|+.||...+.+ |--++. ..|+|||+..+ -|...+.. .++|+|+|+
T Consensus 152 ~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIM-AcGTGKTfTsL-kisEala~--------------~~iL~LvPS 215 (1518)
T COG4889 152 DNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIM-ACGTGKTFTSL-KISEALAA--------------ARILFLVPS 215 (1518)
T ss_pred cccccCCCCCCChhHHHHHHHHHhhcccccCCcEEE-ecCCCccchHH-HHHHHHhh--------------hheEeecch
Confidence 3444456678999999999988754 222322 36899999854 34333322 359999999
Q ss_pred HHHHHHHHHHHHHhcccCCcEEEEEECCCChH--------------------HHHHHH-----hcCccEEEeChHHHHHH
Q 013173 233 RELSSQIHVEAKKFSYQTGVKVVVAYGGAPIN--------------------QQLREL-----ERGVDILVATPGRLVDL 287 (448)
Q Consensus 233 reL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~--------------------~~~~~l-----~~~~~Ilv~Tp~~l~~~ 287 (448)
..|..|..++...-. ...++...+.+..... .-...+ ..+--|+++|.+.|...
T Consensus 216 IsLLsQTlrew~~~~-~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i 294 (1518)
T COG4889 216 ISLLSQTLREWTAQK-ELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRI 294 (1518)
T ss_pred HHHHHHHHHHHhhcc-CccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHH
Confidence 999999888776532 2234444333332111 111111 12346899999998877
Q ss_pred HhcccccCCCeeEEEEcCCcccc
Q 013173 288 LERARVSLQMIRYLALDEADRML 310 (448)
Q Consensus 288 l~~~~~~l~~v~~lVlDEah~ll 310 (448)
-+.-..-+..++++|.||||+-.
T Consensus 295 ~eAQe~G~~~fDliicDEAHRTt 317 (1518)
T COG4889 295 KEAQEAGLDEFDLIICDEAHRTT 317 (1518)
T ss_pred HHHHHcCCCCccEEEecchhccc
Confidence 66555568889999999999864
No 157
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=98.13 E-value=8.6e-06 Score=85.53 Aligned_cols=163 Identities=18% Similarity=0.218 Sum_probs=103.6
Q ss_pred CCHHHHhHHhhHh----CCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q 013173 168 PTPVQRHAIPISI----GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEA 243 (448)
Q Consensus 168 pt~~Q~~~i~~i~----~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~ 243 (448)
+-++|.--+..+. .+-+.|+.-..|-|||... +..|..|.+.+. .+| -|||||.-.|-+. ..++
T Consensus 400 LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQv-IaFlayLkq~g~---------~gp-HLVVvPsSTleNW-lrEf 467 (941)
T KOG0389|consen 400 LKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQV-IAFLAYLKQIGN---------PGP-HLVVVPSSTLENW-LREF 467 (941)
T ss_pred ccchhhhhHHHHHHHHHccccceehhhccCcchhHH-HHHHHHHHHcCC---------CCC-cEEEecchhHHHH-HHHH
Confidence 4568888887553 4556789999999999863 444555554432 223 4999999998765 6678
Q ss_pred HHhcccCCcEEEEEECCCChHHHHHHHhc----CccEEEeChHHHHHHHhc-ccccCCCeeEEEEcCCcccccCCCHHHH
Q 013173 244 KKFSYQTGVKVVVAYGGAPINQQLRELER----GVDILVATPGRLVDLLER-ARVSLQMIRYLALDEADRMLDMGFEPQI 318 (448)
Q Consensus 244 ~~~~~~~~~~~~~~~gg~~~~~~~~~l~~----~~~Ilv~Tp~~l~~~l~~-~~~~l~~v~~lVlDEah~ll~~gf~~~i 318 (448)
.+|| +.++|...||......+++.... ..||||+|..-...--.. ..+.-.++.|+|+||+|.|-.+.- +-+
T Consensus 468 ~kwC--Psl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~S-eRy 544 (941)
T KOG0389|consen 468 AKWC--PSLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRTS-ERY 544 (941)
T ss_pred HHhC--CceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccch-HHH
Confidence 8886 46888888888766555554322 479999997654321111 112245678999999998866542 223
Q ss_pred HHHHHHcCCCCCCCcEEEEEeccC-chHHHHHHH
Q 013173 319 RKIVQQMDMPPPGMRQTMLFSATF-PKEIQRLAS 351 (448)
Q Consensus 319 ~~i~~~l~~~~~~~~q~i~~SAT~-~~~v~~l~~ 351 (448)
+.++.. + ..+-|++|.|. -.++.+|+.
T Consensus 545 ~~LM~I-----~-An~RlLLTGTPLQNNL~ELiS 572 (941)
T KOG0389|consen 545 KHLMSI-----N-ANFRLLLTGTPLQNNLKELIS 572 (941)
T ss_pred HHhccc-----c-ccceEEeeCCcccccHHHHHH
Confidence 333221 2 33468889995 344444443
No 158
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.12 E-value=1e-05 Score=74.19 Aligned_cols=124 Identities=15% Similarity=0.170 Sum_probs=72.1
Q ss_pred CCCHHHHhHHhhHhCCC--CeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q 013173 167 KPTPVQRHAIPISIGGR--DLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAK 244 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~~g~--d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~ 244 (448)
++++-|++++..++... -++++++.|+|||.+. -.+...+... +.++++++||...+..+.+.+.
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l-~~~~~~~~~~------------g~~v~~~apT~~Aa~~L~~~~~ 67 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLL-KALAEALEAA------------GKRVIGLAPTNKAAKELREKTG 67 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHH-HHHHHHHHHT------------T--EEEEESSHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHH-HHHHHHHHhC------------CCeEEEECCcHHHHHHHHHhhC
Confidence 36889999999887543 4778899999999853 3344333322 2359999999999888666522
Q ss_pred HhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccc----cCCCeeEEEEcCCcccccCCCHHHHHH
Q 013173 245 KFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARV----SLQMIRYLALDEADRMLDMGFEPQIRK 320 (448)
Q Consensus 245 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~----~l~~v~~lVlDEah~ll~~gf~~~i~~ 320 (448)
+.+ .|-..++........ .+...++||||||-.+.. ..+..
T Consensus 68 -------~~a------------------------~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~----~~~~~ 112 (196)
T PF13604_consen 68 -------IEA------------------------QTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDS----RQLAR 112 (196)
T ss_dssp -------S-E------------------------EEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BH----HHHHH
T ss_pred -------cch------------------------hhHHHHHhcCCcccccccccCCcccEEEEecccccCH----HHHHH
Confidence 111 111111111111110 145567999999997644 67888
Q ss_pred HHHHcCCCCCCCcEEEEEecc
Q 013173 321 IVQQMDMPPPGMRQTMLFSAT 341 (448)
Q Consensus 321 i~~~l~~~~~~~~q~i~~SAT 341 (448)
++..+. ....++|++-=.
T Consensus 113 ll~~~~---~~~~klilvGD~ 130 (196)
T PF13604_consen 113 LLRLAK---KSGAKLILVGDP 130 (196)
T ss_dssp HHHHS----T-T-EEEEEE-T
T ss_pred HHHHHH---hcCCEEEEECCc
Confidence 888873 235667776554
No 159
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.12 E-value=1.6e-05 Score=74.02 Aligned_cols=74 Identities=23% Similarity=0.301 Sum_probs=50.1
Q ss_pred CCCHHHHhHHhhHhCCCC-eeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013173 167 KPTPVQRHAIPISIGGRD-LMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK 245 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~~g~d-~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~ 245 (448)
++++-|..||..++...+ .+|.+|.|+|||.... -++..+..... ........++||++|+..-+..+.+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~-~~i~~~~~~~~----~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLA-SIIAQLLQRFK----SRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHH-HHHHHH-----------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHH-HHHHHhccchh----hhhhhccccceeecCCchhHHHHHHHHHh
Confidence 467899999999999998 9999999999996433 34444421000 00112345699999999999999999888
No 160
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.89 E-value=4e-05 Score=76.72 Aligned_cols=126 Identities=22% Similarity=0.330 Sum_probs=84.3
Q ss_pred CCHHHHhHHhhHhCCCC-----eeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 013173 168 PTPVQRHAIPISIGGRD-----LMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVE 242 (448)
Q Consensus 168 pt~~Q~~~i~~i~~g~d-----~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~ 242 (448)
+-|+|++.+-.+....+ -++.-..|.|||...+--+|..+- +-..||++|+.+|. |..++
T Consensus 185 LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae~~--------------ra~tLVvaP~VAlm-QW~nE 249 (791)
T KOG1002|consen 185 LLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAEVD--------------RAPTLVVAPTVALM-QWKNE 249 (791)
T ss_pred chhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhccc--------------cCCeeEEccHHHHH-HHHHH
Confidence 56789998876654333 466778999999875544443221 11289999999985 66888
Q ss_pred HHHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhccc-------------ccCCCeeE--EEEcCCc
Q 013173 243 AKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERAR-------------VSLQMIRY--LALDEAD 307 (448)
Q Consensus 243 ~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~-------------~~l~~v~~--lVlDEah 307 (448)
+.++.. -..++.+.+| .......+.+. ++|++.+|...+....++.. .-|.++++ +||||||
T Consensus 250 I~~~T~-gslkv~~YhG-~~R~~nikel~-~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH 326 (791)
T KOG1002|consen 250 IERHTS-GSLKVYIYHG-AKRDKNIKELM-NYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAH 326 (791)
T ss_pred HHHhcc-CceEEEEEec-ccccCCHHHhh-cCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhhc
Confidence 888765 3456655555 44444455544 48999999999987765411 12455554 8999999
Q ss_pred cccc
Q 013173 308 RMLD 311 (448)
Q Consensus 308 ~ll~ 311 (448)
.+-+
T Consensus 327 ~IK~ 330 (791)
T KOG1002|consen 327 NIKD 330 (791)
T ss_pred cccc
Confidence 7744
No 161
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.87 E-value=1.2e-05 Score=73.70 Aligned_cols=58 Identities=17% Similarity=0.207 Sum_probs=40.8
Q ss_pred CCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHH
Q 013173 167 KPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTREL 235 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL 235 (448)
-.|+-|+.++..+++..-+++.++.|||||+..+..+++.+.... .-+.+|+-|+.+.
T Consensus 4 p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~-----------~~kiii~Rp~v~~ 61 (205)
T PF02562_consen 4 PKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGE-----------YDKIIITRPPVEA 61 (205)
T ss_dssp --SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS------------SEEEEEE-S--T
T ss_pred CCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCC-----------CcEEEEEecCCCC
Confidence 357899999999997788999999999999999988888776532 2347788787764
No 162
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=97.84 E-value=0.00018 Score=69.03 Aligned_cols=173 Identities=16% Similarity=0.179 Sum_probs=107.3
Q ss_pred cCCCCHHHHHHHHHCCCCCCCHHHHhHHhhHh----------CCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCC
Q 013173 149 EIDLGEALNLNIRRCKYVKPTPVQRHAIPISI----------GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRG 218 (448)
Q Consensus 149 ~l~L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~----------~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~ 218 (448)
.+.|++.+... | .++..|-+++-.+. ...-.++--.||.||--...-.|++.+++..
T Consensus 25 ~~~lp~~~~~~----g--~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr------- 91 (303)
T PF13872_consen 25 RLHLPEEVIDS----G--LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGR------- 91 (303)
T ss_pred ccCCCHHHHhc----c--cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCC-------
Confidence 34566654421 2 46788888876543 1345788889999999876666777666532
Q ss_pred CCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcc---cccC
Q 013173 219 SRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA---RVSL 295 (448)
Q Consensus 219 ~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~---~~~l 295 (448)
.++|.++.+-.|-.+..+.++.+... .+.+..+..- ... ....+ .-.||++|...|...-... ...+
T Consensus 92 -----~r~vwvS~s~dL~~Da~RDl~DIG~~-~i~v~~l~~~-~~~-~~~~~--~~GvlF~TYs~L~~~~~~~~~~~sRl 161 (303)
T PF13872_consen 92 -----KRAVWVSVSNDLKYDAERDLRDIGAD-NIPVHPLNKF-KYG-DIIRL--KEGVLFSTYSTLISESQSGGKYRSRL 161 (303)
T ss_pred -----CceEEEECChhhhhHHHHHHHHhCCC-cccceechhh-ccC-cCCCC--CCCccchhHHHHHhHHhccCCccchH
Confidence 24899999999999999999987643 3333332210 000 00111 2469999998887664321 1111
Q ss_pred ---------CCeeEEEEcCCcccccCCC--------HHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHH
Q 013173 296 ---------QMIRYLALDEADRMLDMGF--------EPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRL 349 (448)
Q Consensus 296 ---------~~v~~lVlDEah~ll~~gf--------~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l 349 (448)
..=.+|||||||.+-...- ...+..+-+.+ |..+ ++.+|||...+..+|
T Consensus 162 ~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~L----P~AR-vvY~SATgasep~Nm 227 (303)
T PF13872_consen 162 DQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRL----PNAR-VVYASATGASEPRNM 227 (303)
T ss_pred HHHHHHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhC----CCCc-EEEecccccCCCcee
Confidence 1124799999999865432 12334444455 5544 999999987776654
No 163
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=97.83 E-value=0.00015 Score=81.36 Aligned_cols=136 Identities=19% Similarity=0.171 Sum_probs=88.8
Q ss_pred CeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCh
Q 013173 184 DLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPI 263 (448)
Q Consensus 184 d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~ 263 (448)
.-+|-=-||||||+.....+ .++... ...|.++||+-+++|-.|+.+.+..+........ ...+.
T Consensus 275 ~G~IWHtqGSGKTlTm~~~A--~~l~~~---------~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s~ 339 (962)
T COG0610 275 GGYIWHTQGSGKTLTMFKLA--RLLLEL---------PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAEST 339 (962)
T ss_pred ceEEEeecCCchHHHHHHHH--HHHHhc---------cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccCH
Confidence 47888889999999754433 222221 3457899999999999999999999875432211 34444
Q ss_pred HHHHHHHhcC-ccEEEeChHHHHHHHhccc-ccC-CCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEec
Q 013173 264 NQQLRELERG-VDILVATPGRLVDLLERAR-VSL-QMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSA 340 (448)
Q Consensus 264 ~~~~~~l~~~-~~Ilv~Tp~~l~~~l~~~~-~~l-~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SA 340 (448)
.+-.+.++.+ -.|+|+|-+.|-..+.... ..+ ..=-.||+|||||- +.|+ .-..+-..+ + +...++||.
T Consensus 340 ~~Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRS-Q~G~--~~~~~~~~~----~-~a~~~gFTG 411 (962)
T COG0610 340 SELKELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRS-QYGE--LAKLLKKAL----K-KAIFIGFTG 411 (962)
T ss_pred HHHHHHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhc-cccH--HHHHHHHHh----c-cceEEEeeC
Confidence 5555555544 3799999999988876541 112 22235899999975 2232 222223333 2 256899999
Q ss_pred cC
Q 013173 341 TF 342 (448)
Q Consensus 341 T~ 342 (448)
|.
T Consensus 412 TP 413 (962)
T COG0610 412 TP 413 (962)
T ss_pred Cc
Confidence 97
No 164
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.82 E-value=0.0002 Score=66.24 Aligned_cols=150 Identities=21% Similarity=0.322 Sum_probs=93.2
Q ss_pred cccCCCCHHHHHHHHHCCCCCCCHHHHhHHhhHhC---CCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCC
Q 013173 147 FAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIG---GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVY 223 (448)
Q Consensus 147 f~~l~L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~---g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~ 223 (448)
|+...-++.|+--+.. + --.++.|.+....+.+ ++|.+.+.-+|.|||.+ ++|++..++.++.
T Consensus 5 w~p~~~P~wLl~E~e~-~-iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg~----------- 70 (229)
T PF12340_consen 5 WDPMEYPDWLLFEIES-N-ILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALADGS----------- 70 (229)
T ss_pred CCchhChHHHHHHHHc-C-ceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcCCC-----------
Confidence 4444455555544432 2 2578999998887764 68999999999999998 6888888876542
Q ss_pred ceEEEEcCcHHHHHHHHHHHHH-hcccCCcEEEEE--ECCCChH-H---HHH----HHhcCccEEEeChHHHHHHHhc--
Q 013173 224 PLALILAPTRELSSQIHVEAKK-FSYQTGVKVVVA--YGGAPIN-Q---QLR----ELERGVDILVATPGRLVDLLER-- 290 (448)
Q Consensus 224 ~~~lil~PtreL~~qi~~~~~~-~~~~~~~~~~~~--~gg~~~~-~---~~~----~l~~~~~Ilv~Tp~~l~~~l~~-- 290 (448)
..+.+++| ++|..|....+.. |+.-.+-++..+ .-..... . ... ...+.-.|+++||+.++.+.-.
T Consensus 71 ~LvrviVp-k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~l 149 (229)
T PF12340_consen 71 RLVRVIVP-KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGL 149 (229)
T ss_pred cEEEEEcC-HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHH
Confidence 24666676 5688898888864 444334343332 1222211 1 111 2222347999999999765311
Q ss_pred -----ccc-----------cCCCeeEEEEcCCccccc
Q 013173 291 -----ARV-----------SLQMIRYLALDEADRMLD 311 (448)
Q Consensus 291 -----~~~-----------~l~~v~~lVlDEah~ll~ 311 (448)
+.. .+.....=|+||+|..|.
T Consensus 150 e~l~~~~~~~~~~l~~~q~~l~~~~rdilDEsDe~L~ 186 (229)
T PF12340_consen 150 ERLQDGKPEEARELLKIQKWLDEHSRDILDESDEILS 186 (229)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhcCCeEeECchhccC
Confidence 110 133445569999998765
No 165
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=97.79 E-value=8.1e-05 Score=80.28 Aligned_cols=128 Identities=23% Similarity=0.361 Sum_probs=80.8
Q ss_pred CCCHHHHhHHhhHh----CCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 013173 167 KPTPVQRHAIPISI----GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVE 242 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~----~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~ 242 (448)
++.+||.+.+..+. ++-+-|+.-.+|-|||..- +.++..++..+. ..+|. ||++|+-.|..... +
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQt-IsLitYLmE~K~--------~~GP~-LvivPlstL~NW~~-E 462 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQT-ISLITYLMEHKQ--------MQGPF-LIIVPLSTLVNWSS-E 462 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHHH-HHHHHHHHHHcc--------cCCCe-EEeccccccCCchh-h
Confidence 57788998887654 2345788889999999873 555556665442 33444 89999999987744 4
Q ss_pred HHHhcccCCcEEEEEECCCChH-HHH--HHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcccc
Q 013173 243 AKKFSYQTGVKVVVAYGGAPIN-QQL--RELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRML 310 (448)
Q Consensus 243 ~~~~~~~~~~~~~~~~gg~~~~-~~~--~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll 310 (448)
+.+++ ..+.... |.|.+-. ..+ .......+||++|.+.+.. ....+.--+..|+||||.|+|-
T Consensus 463 f~kWa--PSv~~i~-YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik--dk~lLsKI~W~yMIIDEGHRmK 528 (1157)
T KOG0386|consen 463 FPKWA--PSVQKIQ-YKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK--DKALLSKISWKYMIIDEGHRMK 528 (1157)
T ss_pred ccccc--cceeeee-eeCCHHHHhhHHHHHhcccceeeeeeHHHhcC--CHHHHhccCCcceeeccccccc
Confidence 55543 2344444 4454321 111 1112347999999887764 2222333445789999999984
No 166
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=97.78 E-value=8.5e-05 Score=70.01 Aligned_cols=86 Identities=26% Similarity=0.388 Sum_probs=69.8
Q ss_pred CCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCC-ChHHHHHHHhc-CccEEEeChHHHHHHHhcccccCCCe
Q 013173 221 TVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGA-PINQQLRELER-GVDILVATPGRLVDLLERARVSLQMI 298 (448)
Q Consensus 221 ~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~-~~~~~~~~l~~-~~~Ilv~Tp~~l~~~l~~~~~~l~~v 298 (448)
...|.+|||+..-.-|..++..++.|.. -+..+..++.-. .+.++...+.. .++|.||||+||..+++.+.+.++++
T Consensus 124 ~gsP~~lvvs~SalRa~dl~R~l~~~~~-k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l 202 (252)
T PF14617_consen 124 KGSPHVLVVSSSALRAADLIRALRSFKG-KDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSNL 202 (252)
T ss_pred CCCCEEEEEcchHHHHHHHHHHHHhhcc-CCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcccC
Confidence 4568999999999989999999888741 123454555444 67788888875 58999999999999999999999999
Q ss_pred eEEEEcCCc
Q 013173 299 RYLALDEAD 307 (448)
Q Consensus 299 ~~lVlDEah 307 (448)
.+||||--|
T Consensus 203 ~~ivlD~s~ 211 (252)
T PF14617_consen 203 KRIVLDWSY 211 (252)
T ss_pred eEEEEcCCc
Confidence 999999754
No 167
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=97.77 E-value=0.00016 Score=73.58 Aligned_cols=204 Identities=13% Similarity=0.044 Sum_probs=119.2
Q ss_pred CCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCC
Q 013173 182 GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGA 261 (448)
Q Consensus 182 g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~ 261 (448)
.+-++-++||-||||-- +|+++..-+ ..++--|.|-||..+++.+.+. ++.+-+++|..
T Consensus 191 RkIi~H~GPTNSGKTy~----ALqrl~~ak-------------sGvycGPLrLLA~EV~~r~na~----gipCdL~TGeE 249 (700)
T KOG0953|consen 191 RKIIMHVGPTNSGKTYR----ALQRLKSAK-------------SGVYCGPLRLLAHEVYDRLNAL----GIPCDLLTGEE 249 (700)
T ss_pred heEEEEeCCCCCchhHH----HHHHHhhhc-------------cceecchHHHHHHHHHHHhhhc----CCCccccccce
Confidence 34578899999999986 345554332 2789999999999999999985 56666666543
Q ss_pred ChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEecc
Q 013173 262 PINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSAT 341 (448)
Q Consensus 262 ~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT 341 (448)
....... ...++.+=||-+.+. --...++.||||+.+|-|....-.+.+-+..+. ..+....+
T Consensus 250 ~~~~~~~--~~~a~hvScTVEM~s--------v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~---AdEiHLCG---- 312 (700)
T KOG0953|consen 250 RRFVLDN--GNPAQHVSCTVEMVS--------VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLA---ADEIHLCG---- 312 (700)
T ss_pred eeecCCC--CCcccceEEEEEEee--------cCCceEEEEehhHHhhcCcccchHHHHHHHhhh---hhhhhccC----
Confidence 2211110 011455666654321 124468899999999987654444444433331 12221111
Q ss_pred CchHHHHHHHhhhcC---cEEEEecccccccCceeEEEEEecccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHH
Q 013173 342 FPKEIQRLASDFLAN---YIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGAD 418 (448)
Q Consensus 342 ~~~~v~~l~~~~l~~---~~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~ 418 (448)
.+.+..++++.+.. .+.+ ..|+...+..-.+.++.-|.... .+-+ |.|-|++..-
T Consensus 313 -epsvldlV~~i~k~TGd~vev-------------~~YeRl~pL~v~~~~~~sl~nlk-------~GDC-vV~FSkk~I~ 370 (700)
T KOG0953|consen 313 -EPSVLDLVRKILKMTGDDVEV-------------REYERLSPLVVEETALGSLSNLK-------PGDC-VVAFSKKDIF 370 (700)
T ss_pred -CchHHHHHHHHHhhcCCeeEE-------------EeecccCcceehhhhhhhhccCC-------CCCe-EEEeehhhHH
Confidence 24455666665432 2222 12222222111122333333322 2223 4466788888
Q ss_pred HHHHHHHHCCCC-eEEecCCCCHHHHHH
Q 013173 419 ALEHWLYMNGFP-ATTIHGDRTQQRTSI 445 (448)
Q Consensus 419 ~l~~~L~~~g~~-~~~iHg~~~q~eR~~ 445 (448)
.+...+...|.. |.+|+|.++++.|.+
T Consensus 371 ~~k~kIE~~g~~k~aVIYGsLPPeTr~a 398 (700)
T KOG0953|consen 371 TVKKKIEKAGNHKCAVIYGSLPPETRLA 398 (700)
T ss_pred HHHHHHHHhcCcceEEEecCCCCchhHH
Confidence 899999888766 999999999998864
No 168
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=97.75 E-value=7.1e-05 Score=79.61 Aligned_cols=145 Identities=17% Similarity=0.180 Sum_probs=79.6
Q ss_pred CCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHH---H----HH-HHhcccCCcEE
Q 013173 183 RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIH---V----EA-KKFSYQTGVKV 254 (448)
Q Consensus 183 ~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~---~----~~-~~~~~~~~~~~ 254 (448)
-++=|.+.||+|||.||+-.|+..-.+.+. .+-||++||.+.-.-++ . .+ +.....+.++.
T Consensus 75 lNiDI~METGTGKTy~YlrtmfeLhk~YG~-----------~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~ 143 (985)
T COG3587 75 LNIDILMETGTGKTYTYLRTMFELHKKYGL-----------FKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLES 143 (985)
T ss_pred ceeeEEEecCCCceeeHHHHHHHHHHHhCc-----------eeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeE
Confidence 467789999999999998777654333321 24799999988654422 2 22 22222223333
Q ss_pred EEEECCCChHHHHHHHhcCccEEEeChHHHHH------HHhccccc--------------CCCe-eEEEEcCCcccccCC
Q 013173 255 VVAYGGAPINQQLRELERGVDILVATPGRLVD------LLERARVS--------------LQMI-RYLALDEADRMLDMG 313 (448)
Q Consensus 255 ~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~------~l~~~~~~--------------l~~v-~~lVlDEah~ll~~g 313 (448)
+.. ........-.-...|.||+.|-..+.. ++...... +..+ -+|||||-|+|...
T Consensus 144 ~i~--~~~~~~~~~~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~rPIvIvDEPh~f~~~- 220 (985)
T COG3587 144 YIY--DEDIEKFKFKSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASMRPIVIVDEPHRFLGD- 220 (985)
T ss_pred Eee--chHHHHHhhccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhcCCEEEecChhhcccc-
Confidence 332 222222222233457888888665532 12111111 1111 36999999999763
Q ss_pred CHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHH
Q 013173 314 FEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQR 348 (448)
Q Consensus 314 f~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~ 348 (448)
...+..|.... | .-++=|+||++++...
T Consensus 221 -~k~~~~i~~l~----p--l~ilRfgATfkd~y~~ 248 (985)
T COG3587 221 -DKTYGAIKQLN----P--LLILRFGATFKDEYNN 248 (985)
T ss_pred -hHHHHHHHhhC----c--eEEEEecccchhhhcC
Confidence 12222232221 1 2378899999988763
No 169
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.70 E-value=0.0011 Score=66.54 Aligned_cols=108 Identities=15% Similarity=0.170 Sum_probs=67.4
Q ss_pred CeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCh
Q 013173 184 DLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPI 263 (448)
Q Consensus 184 d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~ 263 (448)
-++|.+..|||||++.+ -++..+... ..+..++++++...|...+...+.+-.. .
T Consensus 3 v~~I~G~aGTGKTvla~-~l~~~l~~~----------~~~~~~~~l~~n~~l~~~l~~~l~~~~~----------~---- 57 (352)
T PF09848_consen 3 VILITGGAGTGKTVLAL-NLAKELQNS----------EEGKKVLYLCGNHPLRNKLREQLAKKYN----------P---- 57 (352)
T ss_pred EEEEEecCCcCHHHHHH-HHHHHhhcc----------ccCCceEEEEecchHHHHHHHHHhhhcc----------c----
Confidence 47899999999999743 233333111 1234589999999999988888766320 0
Q ss_pred HHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcccccCC-------CHHHHHHHHHH
Q 013173 264 NQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMG-------FEPQIRKIVQQ 324 (448)
Q Consensus 264 ~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~g-------f~~~i~~i~~~ 324 (448)
......+..+..+.+.+..........++|||||||+|.+.+ ...++..|+..
T Consensus 58 --------~~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 58 --------KLKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred --------chhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 001233444444444333223346788999999999998832 24566666654
No 170
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.70 E-value=0.00015 Score=74.59 Aligned_cols=65 Identities=22% Similarity=0.296 Sum_probs=51.5
Q ss_pred CCCHHHHhHHhhHhCCCC-eeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q 013173 167 KPTPVQRHAIPISIGGRD-LMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAK 244 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~~g~d-~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~ 244 (448)
.+.+-|+.|+....+.++ .++++|.|+|||.....-|.+.+.+. -++||.+||.+-+.-|.+.+.
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~-------------k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQK-------------KRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHcC-------------CeEEEEcCchHHHHHHHHHhc
Confidence 467889999999888866 67999999999998666555444332 359999999999999988643
No 171
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=97.69 E-value=0.00016 Score=74.88 Aligned_cols=85 Identities=20% Similarity=0.140 Sum_probs=67.8
Q ss_pred HHHHHCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHH
Q 013173 158 LNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSS 237 (448)
Q Consensus 158 ~~l~~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~ 237 (448)
+.+...++.+++.-|..|+..++...=.++++|.|+|||..-.-.+++.+.+. ...+||.+|+..-+.
T Consensus 401 ~~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~~------------~~~VLvcApSNiAVD 468 (935)
T KOG1802|consen 401 RRFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQH------------AGPVLVCAPSNIAVD 468 (935)
T ss_pred hhhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHhc------------CCceEEEcccchhHH
Confidence 35556678889999999999999999999999999999998766666544332 234999999999999
Q ss_pred HHHHHHHHhcccCCcEEEEEE
Q 013173 238 QIHVEAKKFSYQTGVKVVVAY 258 (448)
Q Consensus 238 qi~~~~~~~~~~~~~~~~~~~ 258 (448)
|+++.+.+ ++++|+-+.
T Consensus 469 qLaeKIh~----tgLKVvRl~ 485 (935)
T KOG1802|consen 469 QLAEKIHK----TGLKVVRLC 485 (935)
T ss_pred HHHHHHHh----cCceEeeee
Confidence 99999988 456665443
No 172
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=97.69 E-value=0.0003 Score=76.90 Aligned_cols=153 Identities=19% Similarity=0.287 Sum_probs=99.5
Q ss_pred CCHHHHhHHhhHh----CCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q 013173 168 PTPVQRHAIPISI----GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEA 243 (448)
Q Consensus 168 pt~~Q~~~i~~i~----~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~ 243 (448)
++.||+.-+..+. ++-|-|+.-..|-|||.. .|.+|.++..+.. .=+| -|||+||-.+.+. .=++
T Consensus 616 LReYQkiGLdWLatLYeknlNGILADEmGLGKTIQ-tISllAhLACeeg--------nWGP-HLIVVpTsviLnW-EMEl 684 (1958)
T KOG0391|consen 616 LREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQ-TISLLAHLACEEG--------NWGP-HLIVVPTSVILNW-EMEL 684 (1958)
T ss_pred HHHHHHhhHHHHHHHHHhcccceehhhhcccchhH-HHHHHHHHHhccc--------CCCC-ceEEeechhhhhh-hHHH
Confidence 3457888887654 345778899999999987 4556666654321 1122 4899999887655 5568
Q ss_pred HHhcccCCcEEEEEECCCChHHHHH-HHh--cCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcccccCCCHHHHHH
Q 013173 244 KKFSYQTGVKVVVAYGGAPINQQLR-ELE--RGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRK 320 (448)
Q Consensus 244 ~~~~~~~~~~~~~~~gg~~~~~~~~-~l~--~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~ 320 (448)
++|| .++++..+||........+ -|. +..||.|++...+..-+.. +.-.+.+||||||||.+-. |..+--.
T Consensus 685 KRwc--PglKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~A--FkrkrWqyLvLDEaqnIKn--fksqrWQ 758 (1958)
T KOG0391|consen 685 KRWC--PGLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLTA--FKRKRWQYLVLDEAQNIKN--FKSQRWQ 758 (1958)
T ss_pred hhhC--CcceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHHH--HHhhccceeehhhhhhhcc--hhHHHHH
Confidence 8886 5789999888754332222 111 1268999998877665542 2346789999999998855 4444333
Q ss_pred HHHHcCCCCCCCcEEEEEeccC
Q 013173 321 IVQQMDMPPPGMRQTMLFSATF 342 (448)
Q Consensus 321 i~~~l~~~~~~~~q~i~~SAT~ 342 (448)
-+..+ . ..|-++++.|.
T Consensus 759 Allnf----n-sqrRLLLtgTP 775 (1958)
T KOG0391|consen 759 ALLNF----N-SQRRLLLTGTP 775 (1958)
T ss_pred HHhcc----c-hhheeeecCCc
Confidence 33333 1 24567888885
No 173
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.66 E-value=0.00048 Score=73.28 Aligned_cols=143 Identities=16% Similarity=0.211 Sum_probs=85.5
Q ss_pred CHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcc
Q 013173 169 TPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSY 248 (448)
Q Consensus 169 t~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~ 248 (448)
...|+.++..++..+-+++.++.|+|||... ..++..+...... ...+++++++||-.-+..+.+.+.....
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v-~~ll~~l~~~~~~-------~~~~~I~l~APTGkAA~rL~e~~~~~~~ 218 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTV-ARLLLALVKQSPK-------QGKLRIALAAPTGKAAARLAESLRKAVK 218 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHH-HHHHHHHHHhccc-------cCCCcEEEECCcHHHHHHHHHHHHhhhc
Confidence 3799999999999999999999999999863 2333333322110 0124689999999988887777655322
Q ss_pred cCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhc------ccccCCCeeEEEEcCCcccccCCCHHHHHHHH
Q 013173 249 QTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLER------ARVSLQMIRYLALDEADRMLDMGFEPQIRKIV 322 (448)
Q Consensus 249 ~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~------~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~ 322 (448)
..... . .+.....+-..|-.+|+..... ..-+.-.+++||||||-++ + .+.+..++
T Consensus 219 ~l~~~----------~----~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMv-d---~~l~~~ll 280 (586)
T TIGR01447 219 NLAAA----------E----ALIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMV-D---LPLMAKLL 280 (586)
T ss_pred ccccc----------h----hhhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccC-C---HHHHHHHH
Confidence 11110 0 0000011123333333322110 1112345789999999854 3 36677888
Q ss_pred HHcCCCCCCCcEEEEEecc
Q 013173 323 QQMDMPPPGMRQTMLFSAT 341 (448)
Q Consensus 323 ~~l~~~~~~~~q~i~~SAT 341 (448)
..+ +...++|++-=.
T Consensus 281 ~al----~~~~rlIlvGD~ 295 (586)
T TIGR01447 281 KAL----PPNTKLILLGDK 295 (586)
T ss_pred Hhc----CCCCEEEEECCh
Confidence 877 566777776544
No 174
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=97.65 E-value=8.6e-05 Score=77.33 Aligned_cols=138 Identities=20% Similarity=0.224 Sum_probs=81.9
Q ss_pred CCHHHHhHHhhHhC-----CCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 013173 168 PTPVQRHAIPISIG-----GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVE 242 (448)
Q Consensus 168 pt~~Q~~~i~~i~~-----g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~ 242 (448)
+-|.|+.++..+.- ..--|+....|-|||+..+--|++.-....... ....... .+|||||-.-+ .|...+
T Consensus 326 LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~--~~~~~a~-~TLII~PaSli-~qW~~E 401 (901)
T KOG4439|consen 326 LMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKARE--KKGESAS-KTLIICPASLI-HQWEAE 401 (901)
T ss_pred cchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhc--ccccccC-CeEEeCcHHHH-HHHHHH
Confidence 35679999887762 234677788999999975444443322221111 1111122 48999997654 566666
Q ss_pred HHHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHH----HHhccc--ccCCCe--eEEEEcCCcccc
Q 013173 243 AKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVD----LLERAR--VSLQMI--RYLALDEADRML 310 (448)
Q Consensus 243 ~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~----~l~~~~--~~l~~v--~~lVlDEah~ll 310 (448)
+.+-....-++|.+++|........+.+. .+||||+|..-+.. -++.++ ..|..| ..|||||||.+-
T Consensus 402 v~~rl~~n~LsV~~~HG~n~r~i~~~~L~-~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~Ir 476 (901)
T KOG4439|consen 402 VARRLEQNALSVYLYHGPNKREISAKELR-KYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAHNIR 476 (901)
T ss_pred HHHHHhhcceEEEEecCCccccCCHHHHh-hcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhhhhc
Confidence 65544445678888777654333334443 48999999876544 121111 123344 569999999664
No 175
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.64 E-value=0.00034 Score=74.61 Aligned_cols=142 Identities=15% Similarity=0.206 Sum_probs=85.2
Q ss_pred CHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcc
Q 013173 169 TPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSY 248 (448)
Q Consensus 169 t~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~ 248 (448)
.+.|+.|+-..+..+-+++.++.|+|||.... -++..+.+... .....+++++||..-|..+.+.+.....
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~-~ll~~l~~~~~--------~~~~~i~l~APTgkAA~rL~e~~~~~~~ 224 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTTVA-KLLAALIQLAD--------GERCRIRLAAPTGKAAARLTESLGKALR 224 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHH-HHHHHHHHhcC--------CCCcEEEEECCcHHHHHHHHHHHHhhhh
Confidence 58999999999999999999999999998632 23333332210 1124588899999999888887765322
Q ss_pred cCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHh------cccccCCCeeEEEEcCCcccccCCCHHHHHHHH
Q 013173 249 QTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLE------RARVSLQMIRYLALDEADRMLDMGFEPQIRKIV 322 (448)
Q Consensus 249 ~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~------~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~ 322 (448)
..++. ... ......-..|-.+|+.... ...-+.-.+++||||||-++ + .+.+..++
T Consensus 225 ~~~~~-----------~~~---~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMv-d---~~lm~~ll 286 (615)
T PRK10875 225 QLPLT-----------DEQ---KKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMV-D---LPMMARLI 286 (615)
T ss_pred ccccc-----------hhh---hhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhcc-c---HHHHHHHH
Confidence 21110 000 0000111223333322211 11112334689999999854 4 36677788
Q ss_pred HHcCCCCCCCcEEEEEecc
Q 013173 323 QQMDMPPPGMRQTMLFSAT 341 (448)
Q Consensus 323 ~~l~~~~~~~~q~i~~SAT 341 (448)
..+ +...++|++-=.
T Consensus 287 ~al----~~~~rlIlvGD~ 301 (615)
T PRK10875 287 DAL----PPHARVIFLGDR 301 (615)
T ss_pred Hhc----ccCCEEEEecch
Confidence 877 566778777654
No 176
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.59 E-value=0.0034 Score=70.27 Aligned_cols=125 Identities=17% Similarity=0.100 Sum_probs=76.0
Q ss_pred CCCCHHHHhHHhhHhCCCC-eeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q 013173 166 VKPTPVQRHAIPISIGGRD-LMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAK 244 (448)
Q Consensus 166 ~~pt~~Q~~~i~~i~~g~d-~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~ 244 (448)
..+++-|+.++..++.+++ +++.+..|+|||++ +-.++. +... .+.+++.++||---+..+.+
T Consensus 345 ~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~-~~e~-----------~G~~V~~~ApTGkAA~~L~e--- 408 (988)
T PRK13889 345 LVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVARE-AWEA-----------AGYEVRGAALSGIAAENLEG--- 408 (988)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHH-HHHH-----------cCCeEEEecCcHHHHHHHhh---
Confidence 3689999999999998665 78999999999986 233333 3221 13458999999877655432
Q ss_pred HhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcccccCCCHHHHHHHHHH
Q 013173 245 KFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQ 324 (448)
Q Consensus 245 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~ 324 (448)
..++.. .|-.+|+.-...+...+...++||||||-++-. .++..++..
T Consensus 409 ----~tGi~a------------------------~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~~----~~m~~LL~~ 456 (988)
T PRK13889 409 ----GSGIAS------------------------RTIASLEHGWGQGRDLLTSRDVLVIDEAGMVGT----RQLERVLSH 456 (988)
T ss_pred ----ccCcch------------------------hhHHHHHhhhcccccccccCcEEEEECcccCCH----HHHHHHHHh
Confidence 112211 011122111122233466778999999996543 456666654
Q ss_pred cCCCCCCCcEEEEEecc
Q 013173 325 MDMPPPGMRQTMLFSAT 341 (448)
Q Consensus 325 l~~~~~~~~q~i~~SAT 341 (448)
.. +...++|++-=+
T Consensus 457 a~---~~garvVLVGD~ 470 (988)
T PRK13889 457 AA---DAGAKVVLVGDP 470 (988)
T ss_pred hh---hCCCEEEEECCH
Confidence 42 334567776555
No 177
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.58 E-value=0.00049 Score=74.08 Aligned_cols=67 Identities=15% Similarity=0.241 Sum_probs=52.1
Q ss_pred CCCCHHHHhHHhhHhCC-CCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q 013173 166 VKPTPVQRHAIPISIGG-RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAK 244 (448)
Q Consensus 166 ~~pt~~Q~~~i~~i~~g-~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~ 244 (448)
..+++.|+.++..++.. ..++|.+|+|+|||.... -++..+... +.++||++||..-+.++.+.+.
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~-~ii~~~~~~------------g~~VLv~a~sn~Avd~l~e~l~ 222 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLV-ELIRQLVKR------------GLRVLVTAPSNIAVDNLLERLA 222 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHH-HHHHHHHHc------------CCCEEEEcCcHHHHHHHHHHHH
Confidence 35789999999988876 568899999999997643 333333322 2359999999999999998887
Q ss_pred H
Q 013173 245 K 245 (448)
Q Consensus 245 ~ 245 (448)
.
T Consensus 223 ~ 223 (637)
T TIGR00376 223 L 223 (637)
T ss_pred h
Confidence 6
No 178
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=97.54 E-value=0.00034 Score=74.75 Aligned_cols=142 Identities=18% Similarity=0.164 Sum_probs=89.7
Q ss_pred HhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh-----cccCCcE
Q 013173 179 SIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF-----SYQTGVK 253 (448)
Q Consensus 179 i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~-----~~~~~~~ 253 (448)
+...+-+++-..||+|||..+.-.||..++.... ....-+.+-.|+|..++.+++.+..- +...+..
T Consensus 390 v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~--------g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~ 461 (1282)
T KOG0921|consen 390 VAENRVVIIKGETGCGKSTQVAQFLLESFLENSN--------GASFNAVVSQPRRISAISLAERVANERGEEVGETCGYN 461 (1282)
T ss_pred HhcCceeeEeecccccchhHHHHHHHHHHhhccc--------cccccceeccccccchHHHHHHHHHhhHHhhccccccc
Confidence 3345668899999999999999999998887543 33344888889999999988877542 1111111
Q ss_pred EEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCc
Q 013173 254 VVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMR 333 (448)
Q Consensus 254 ~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~ 333 (448)
+.. .+..+.. --.|+.||-|.|+..++.. +..+.++++||+|..--.+ +-+..++..+... ..+.
T Consensus 462 vRf-~Sa~prp--------yg~i~fctvgvllr~~e~g---lrg~sh~i~deiherdv~~--dfll~~lr~m~~t-y~dl 526 (1282)
T KOG0921|consen 462 VRF-DSATPRP--------YGSIMFCTVGVLLRMMENG---LRGISHVIIDEIHERDVDT--DFVLIVLREMIST-YRDL 526 (1282)
T ss_pred ccc-ccccccc--------ccceeeeccchhhhhhhhc---ccccccccchhhhhhccch--HHHHHHHHhhhcc-chhh
Confidence 111 1111111 1269999999999999876 5677899999999653222 2233333333221 2334
Q ss_pred EEEEEeccCc
Q 013173 334 QTMLFSATFP 343 (448)
Q Consensus 334 q~i~~SAT~~ 343 (448)
.++++|||+.
T Consensus 527 ~v~lmsatId 536 (1282)
T KOG0921|consen 527 RVVLMSATID 536 (1282)
T ss_pred hhhhhhcccc
Confidence 4555666653
No 179
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.54 E-value=0.00042 Score=74.15 Aligned_cols=83 Identities=17% Similarity=0.203 Sum_probs=56.7
Q ss_pred CCCHHHHhHHhhHh----CCCCeeEEccCCCCccchhhhhHHHHHhhhhcc---c-----C-------C-----------
Q 013173 167 KPTPVQRHAIPISI----GGRDLMACAQTGSGKTAAFCFPIISGIMREQYV---Q-----R-------P----------- 216 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~----~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~---~-----~-------~----------- 216 (448)
+|++.|...+..++ ...+.++.+|||+|||++.+-..|.+..+.... . . +
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~ 100 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEA 100 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhh
Confidence 68999988776554 467899999999999998766655544332200 0 0 0
Q ss_pred ---CCCCCCCceEEEEcCcHHHHHHHHHHHHHhccc
Q 013173 217 ---RGSRTVYPLALILAPTRELSSQIHVEAKKFSYQ 249 (448)
Q Consensus 217 ---~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~ 249 (448)
......-|++++-+-|-.-..|+.+++++..+.
T Consensus 101 ~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~ 136 (945)
T KOG1132|consen 101 GEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYR 136 (945)
T ss_pred cCccccccCCceEEEecchHHHHHHHHHHHhhcCCC
Confidence 001123577777778887788999999987765
No 180
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.49 E-value=0.0026 Score=68.86 Aligned_cols=127 Identities=17% Similarity=0.141 Sum_probs=90.4
Q ss_pred CHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcc
Q 013173 169 TPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSY 248 (448)
Q Consensus 169 t~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~ 248 (448)
+|+-.+.+-.+.....-++-..||=|||++..+|+.-..+..+ .+.++...--||.--.+.+.++..
T Consensus 80 ~~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~gk-------------gVhvVTvNdYLA~RDae~m~~l~~ 146 (822)
T COG0653 80 RHFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALAGK-------------GVHVVTVNDYLARRDAEWMGPLYE 146 (822)
T ss_pred ChhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcCCC-------------CcEEeeehHHhhhhCHHHHHHHHH
Confidence 3333444444445556788999999999999999865444322 277777778888888888888888
Q ss_pred cCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHH-HHHHhcc------cccCCCeeEEEEcCCcccc
Q 013173 249 QTGVKVVVAYGGAPINQQLRELERGVDILVATPGRL-VDLLERA------RVSLQMIRYLALDEADRML 310 (448)
Q Consensus 249 ~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l-~~~l~~~------~~~l~~v~~lVlDEah~ll 310 (448)
..++.+.+...+.+..+.... -.|||.++|-..| .|++..+ ........|.|+||+|-++
T Consensus 147 ~LGlsvG~~~~~m~~~ek~~a--Y~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSIL 213 (822)
T COG0653 147 FLGLSVGVILAGMSPEEKRAA--YACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSIL 213 (822)
T ss_pred HcCCceeeccCCCChHHHHHH--HhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhhee
Confidence 899999999988876554443 3589999998877 3333221 1224567889999999774
No 181
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.49 E-value=0.001 Score=72.72 Aligned_cols=131 Identities=19% Similarity=0.170 Sum_probs=77.0
Q ss_pred CCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013173 166 VKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK 245 (448)
Q Consensus 166 ~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~ 245 (448)
..+++-|+.++..+...+-+++.++.|+|||.+. -.++..+...+ ....+++++||-.-+..+.+..
T Consensus 322 ~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~~~----------~~~~v~l~ApTg~AA~~L~e~~-- 388 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEELG----------GLLPVGLAAPTGRAAKRLGEVT-- 388 (720)
T ss_pred CCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHHcC----------CCceEEEEeCchHHHHHHHHhc--
Confidence 4799999999999998889999999999999853 23333332211 0134788899998887554321
Q ss_pred hcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcccccCCCHHHHHHHHHHc
Q 013173 246 FSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQM 325 (448)
Q Consensus 246 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l 325 (448)
+... ..+. +.+... ++..... ..-.....++||||||+++-. ..+..++..+
T Consensus 389 -----g~~a------~Tih---~lL~~~-------~~~~~~~---~~~~~~~~~llIvDEaSMvd~----~~~~~Ll~~~ 440 (720)
T TIGR01448 389 -----GLTA------STIH---RLLGYG-------PDTFRHN---HLEDPIDCDLLIVDESSMMDT----WLALSLLAAL 440 (720)
T ss_pred -----CCcc------ccHH---HHhhcc-------CCccchh---hhhccccCCEEEEeccccCCH----HHHHHHHHhC
Confidence 1110 0111 111110 1100000 000124567999999996633 5566777766
Q ss_pred CCCCCCCcEEEEEecc
Q 013173 326 DMPPPGMRQTMLFSAT 341 (448)
Q Consensus 326 ~~~~~~~~q~i~~SAT 341 (448)
+...++|++--+
T Consensus 441 ----~~~~rlilvGD~ 452 (720)
T TIGR01448 441 ----PDHARLLLVGDT 452 (720)
T ss_pred ----CCCCEEEEECcc
Confidence 456677776544
No 182
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=97.48 E-value=0.00069 Score=56.88 Aligned_cols=61 Identities=28% Similarity=0.449 Sum_probs=52.0
Q ss_pred cchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCCHHHHHHhh
Q 013173 382 SDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 382 ~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
..|...+.+++..... .+.++||||+++..++.+++.|...++++..+||+++..+|..++
T Consensus 11 ~~k~~~i~~~i~~~~~-----~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 71 (131)
T cd00079 11 DEKLEALLELLKEHLK-----KGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVL 71 (131)
T ss_pred HHHHHHHHHHHHhccc-----CCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHH
Confidence 3677888888776532 267899999999999999999999999999999999999998764
No 183
>PRK10536 hypothetical protein; Provisional
Probab=97.47 E-value=0.0011 Score=62.71 Aligned_cols=60 Identities=13% Similarity=0.173 Sum_probs=43.4
Q ss_pred CCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHH
Q 013173 164 KYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRE 234 (448)
Q Consensus 164 ~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptre 234 (448)
++.--+..|...+..+.+...+++.+++|||||+..+...++.++... .-+++|.-|+.+
T Consensus 56 ~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~-----------~~kIiI~RP~v~ 115 (262)
T PRK10536 56 PILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKD-----------VDRIIVTRPVLQ 115 (262)
T ss_pred cccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCC-----------eeEEEEeCCCCC
Confidence 344467789999988888888999999999999987776666554321 223666666654
No 184
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=97.18 E-value=0.00057 Score=75.10 Aligned_cols=127 Identities=20% Similarity=0.169 Sum_probs=87.5
Q ss_pred CCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhc
Q 013173 168 PTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFS 247 (448)
Q Consensus 168 pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~ 247 (448)
|.++|.-. -+.-.+--|+...||=|||++..+|++-..+..+ -|-||...--||.-=++.+..+.
T Consensus 170 ~yDVQliG--givLh~G~IAEM~TGEGKTLvAtlp~yLnAL~Gk-------------gVHvVTVNDYLA~RDaewmgply 234 (1112)
T PRK12901 170 HYDVQLIG--GVVLHQGKIAEMATGEGKTLVATLPVYLNALTGN-------------GVHVVTVNDYLAKRDSEWMGPLY 234 (1112)
T ss_pred ccchHHhh--hhhhcCCceeeecCCCCchhHHHHHHHHHHHcCC-------------CcEEEEechhhhhccHHHHHHHH
Confidence 44555443 3333455689999999999999999886665432 16677777888887777777777
Q ss_pred ccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHH-HHHHhcc------cccCCCeeEEEEcCCcccc
Q 013173 248 YQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRL-VDLLERA------RVSLQMIRYLALDEADRML 310 (448)
Q Consensus 248 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l-~~~l~~~------~~~l~~v~~lVlDEah~ll 310 (448)
...|+.+.++..... ..+.+.-.-.|||.++|..-| .|+|+.+ ......+.|.||||+|-+|
T Consensus 235 ~fLGLsvg~i~~~~~-~~~~rr~aY~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDSIL 303 (1112)
T PRK12901 235 EFHGLSVDCIDKHQP-NSEARRKAYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSVL 303 (1112)
T ss_pred HHhCCceeecCCCCC-CHHHHHHhCCCcceecCCCccccccchhccccchHhhhCcCCceeEeechhhhh
Confidence 788999988755222 223344445699999998776 4444322 1224667899999999775
No 185
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.18 E-value=0.0014 Score=55.30 Aligned_cols=20 Identities=35% Similarity=0.406 Sum_probs=13.1
Q ss_pred CCCCeeEEccCCCCccchhh
Q 013173 181 GGRDLMACAQTGSGKTAAFC 200 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~~ 200 (448)
.++.+++.+++|+|||.+..
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~ 22 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIK 22 (131)
T ss_dssp ----EEEEE-TTSSHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHH
Confidence 34678999999999999643
No 186
>PF13245 AAA_19: Part of AAA domain
Probab=97.07 E-value=0.0014 Score=50.15 Aligned_cols=60 Identities=22% Similarity=0.369 Sum_probs=38.5
Q ss_pred HHhhHhCCCC-eeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q 013173 175 AIPISIGGRD-LMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEA 243 (448)
Q Consensus 175 ~i~~i~~g~d-~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~ 243 (448)
+|...+.+.. ++|.++.|||||...+- ++..+..... .. +.++||++||+..+..+.+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~-~i~~l~~~~~-------~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAA-RIAELLAARA-------DP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHH-HHHHHHHHhc-------CC-CCeEEEECCCHHHHHHHHHHH
Confidence 3443334444 55699999999966433 3334432110 01 345999999999999988887
No 187
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.05 E-value=0.049 Score=61.71 Aligned_cols=125 Identities=17% Similarity=0.127 Sum_probs=75.8
Q ss_pred CCCCHHHHhHHhhHhC-CCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q 013173 166 VKPTPVQRHAIPISIG-GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAK 244 (448)
Q Consensus 166 ~~pt~~Q~~~i~~i~~-g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~ 244 (448)
..+++-|+.++..+.. ++-+++++.-|+|||++.- ++.. +... .+.+++.++||---+..+.+.
T Consensus 380 ~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~-~~~~-~~e~-----------~G~~V~g~ApTgkAA~~L~e~-- 444 (1102)
T PRK13826 380 ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMK-AARE-AWEA-----------AGYRVVGGALAGKAAEGLEKE-- 444 (1102)
T ss_pred CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHH-HHHH-HHHH-----------cCCeEEEEcCcHHHHHHHHHh--
Confidence 4799999999998764 5668999999999998632 2333 2221 134588999997766554332
Q ss_pred HhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcccccCCCHHHHHHHHHH
Q 013173 245 KFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQ 324 (448)
Q Consensus 245 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~ 324 (448)
.++.... -..|+..+..+...+..-++||||||-++-. .++..++..
T Consensus 445 -----~Gi~a~T------------------------Ias~ll~~~~~~~~l~~~~vlVIDEAsMv~~----~~m~~Ll~~ 491 (1102)
T PRK13826 445 -----AGIQSRT------------------------LSSWELRWNQGRDQLDNKTVFVLDEAGMVAS----RQMALFVEA 491 (1102)
T ss_pred -----hCCCeee------------------------HHHHHhhhccCccCCCCCcEEEEECcccCCH----HHHHHHHHH
Confidence 2222211 1111101111223456677899999996533 566677766
Q ss_pred cCCCCCCCcEEEEEecc
Q 013173 325 MDMPPPGMRQTMLFSAT 341 (448)
Q Consensus 325 l~~~~~~~~q~i~~SAT 341 (448)
.. ....++|++.=+
T Consensus 492 ~~---~~garvVLVGD~ 505 (1102)
T PRK13826 492 VT---RAGAKLVLVGDP 505 (1102)
T ss_pred HH---hcCCEEEEECCH
Confidence 62 234667776655
No 188
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.03 E-value=0.002 Score=64.92 Aligned_cols=60 Identities=23% Similarity=0.255 Sum_probs=42.8
Q ss_pred CCCHHHHhHHhhH------hCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHH
Q 013173 167 KPTPVQRHAIPIS------IGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQI 239 (448)
Q Consensus 167 ~pt~~Q~~~i~~i------~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi 239 (448)
++++-|+.++..+ ..+..+++.++-|+|||..+ -.|...+.. .+..+++++||-.-|..+
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~--~~i~~~~~~-----------~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLI--KAIIDYLRS-----------RGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHH--HHHHHHhcc-----------ccceEEEecchHHHHHhc
Confidence 3577888888877 57788999999999999953 233333221 224589999998876554
No 189
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.02 E-value=0.0058 Score=61.23 Aligned_cols=133 Identities=18% Similarity=0.199 Sum_probs=66.3
Q ss_pred CCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCc-HHHHHHHHHHHHHhcccCCcEEEEEEC
Q 013173 181 GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPT-RELSSQIHVEAKKFSYQTGVKVVVAYG 259 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Pt-reL~~qi~~~~~~~~~~~~~~~~~~~g 259 (448)
.+..+++++|||+|||+...--+-..+...+. ...++|.+.+ |.-+ .+.++.|+...++.+..+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~----------~~V~lit~D~~R~ga---~EqL~~~a~~~gv~~~~~-- 200 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGA----------SKVALLTTDSYRIGG---HEQLRIFGKILGVPVHAV-- 200 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC----------CeEEEEecccccccH---HHHHHHHHHHcCCceEec--
Confidence 35679999999999999654332222222110 1113333333 2212 334444444444444333
Q ss_pred CCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEe
Q 013173 260 GAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFS 339 (448)
Q Consensus 260 g~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~S 339 (448)
-+++.+...+. .+.+.++|+||++-+... ...+...+..+.........++++|
T Consensus 201 -------------------~~~~~l~~~l~----~l~~~DlVLIDTaG~~~~---d~~l~e~La~L~~~~~~~~~lLVLs 254 (374)
T PRK14722 201 -------------------KDGGDLQLALA----ELRNKHMVLIDTIGMSQR---DRTVSDQIAMLHGADTPVQRLLLLN 254 (374)
T ss_pred -------------------CCcccHHHHHH----HhcCCCEEEEcCCCCCcc---cHHHHHHHHHHhccCCCCeEEEEec
Confidence 23333333332 244567899999875422 1233333333322223334578899
Q ss_pred ccCchH-HHHHHHhhh
Q 013173 340 ATFPKE-IQRLASDFL 354 (448)
Q Consensus 340 AT~~~~-v~~l~~~~l 354 (448)
||...+ +.+.+..|.
T Consensus 255 Ats~~~~l~evi~~f~ 270 (374)
T PRK14722 255 ATSHGDTLNEVVQAYR 270 (374)
T ss_pred CccChHHHHHHHHHHH
Confidence 998544 455556553
No 190
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.01 E-value=0.035 Score=56.06 Aligned_cols=133 Identities=11% Similarity=0.115 Sum_probs=69.1
Q ss_pred CCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCc-HHHHHHHHHHHHHhcccCCcEEEEEECCC
Q 013173 183 RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPT-RELSSQIHVEAKKFSYQTGVKVVVAYGGA 261 (448)
Q Consensus 183 ~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Pt-reL~~qi~~~~~~~~~~~~~~~~~~~gg~ 261 (448)
+.++++++||+|||+...--+........ ......+||-+.| |.-+..+ ++.++...++.+....
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~--------~~g~~V~lit~Dt~R~aa~eQ---L~~~a~~lgvpv~~~~--- 240 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSD--------DKSLNIKIITIDNYRIGAKKQ---IQTYGDIMGIPVKAIE--- 240 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhc--------cCCCeEEEEeccCccHHHHHH---HHHHhhcCCcceEeeC---
Confidence 56899999999999865332211111110 0111224444444 4433332 4555544455443221
Q ss_pred ChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEecc
Q 013173 262 PINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSAT 341 (448)
Q Consensus 262 ~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT 341 (448)
++..+...+.. +.+.++|+||++.++... ..++.++...+....+.....+.+|||
T Consensus 241 ------------------~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~--~~~l~el~~~l~~~~~~~e~~LVlsat 296 (388)
T PRK12723 241 ------------------SFKDLKEEITQ----SKDFDLVLVDTIGKSPKD--FMKLAEMKELLNACGRDAEFHLAVSST 296 (388)
T ss_pred ------------------cHHHHHHHHHH----hCCCCEEEEcCCCCCccC--HHHHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 33334443332 456789999999987532 223444444433222232457899999
Q ss_pred Cc-hHHHHHHHhh
Q 013173 342 FP-KEIQRLASDF 353 (448)
Q Consensus 342 ~~-~~v~~l~~~~ 353 (448)
.. .++.+.+..|
T Consensus 297 ~~~~~~~~~~~~~ 309 (388)
T PRK12723 297 TKTSDVKEIFHQF 309 (388)
T ss_pred CCHHHHHHHHHHh
Confidence 85 4455555555
No 191
>PRK06526 transposase; Provisional
Probab=97.00 E-value=0.002 Score=61.43 Aligned_cols=23 Identities=22% Similarity=0.328 Sum_probs=18.9
Q ss_pred hHhCCCCeeEEccCCCCccchhh
Q 013173 178 ISIGGRDLMACAQTGSGKTAAFC 200 (448)
Q Consensus 178 ~i~~g~d~lv~a~TGsGKT~~~~ 200 (448)
.+..++++++++|+|+|||....
T Consensus 94 fi~~~~nlll~Gp~GtGKThLa~ 116 (254)
T PRK06526 94 FVTGKENVVFLGPPGTGKTHLAI 116 (254)
T ss_pred hhhcCceEEEEeCCCCchHHHHH
Confidence 34467899999999999998644
No 192
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.86 E-value=0.0093 Score=65.56 Aligned_cols=123 Identities=15% Similarity=0.156 Sum_probs=73.5
Q ss_pred CCCCHHHHhHHhhHhCC-CCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q 013173 166 VKPTPVQRHAIPISIGG-RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAK 244 (448)
Q Consensus 166 ~~pt~~Q~~~i~~i~~g-~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~ 244 (448)
..+++-|+.++..++.+ +-+++.++.|+|||...- .++. ++.. .+..+++++||---+..+.+.
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~-~i~~-~~~~-----------~g~~V~~~ApTg~Aa~~L~~~-- 415 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLK-AARE-AWEA-----------AGYRVIGAALSGKAAEGLQAE-- 415 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHH-HHHH-HHHh-----------CCCeEEEEeCcHHHHHHHHhc--
Confidence 36899999999998874 568999999999998532 2332 2221 124589999998776655432
Q ss_pred HhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcccccCCCHHHHHHHHHH
Q 013173 245 KFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQ 324 (448)
Q Consensus 245 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~ 324 (448)
.++... |-.+++..+......+...++||||||-++-. .++..++..
T Consensus 416 -----~g~~a~------------------------Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~~----~~~~~Ll~~ 462 (744)
T TIGR02768 416 -----SGIESR------------------------TLASLEYAWANGRDLLSDKDVLVIDEAGMVGS----RQMARVLKE 462 (744)
T ss_pred -----cCCcee------------------------eHHHHHhhhccCcccCCCCcEEEEECcccCCH----HHHHHHHHH
Confidence 122111 11112111122223456788999999986643 445555554
Q ss_pred cCCCCCCCcEEEEEe
Q 013173 325 MDMPPPGMRQTMLFS 339 (448)
Q Consensus 325 l~~~~~~~~q~i~~S 339 (448)
.. ....++|++-
T Consensus 463 ~~---~~~~kliLVG 474 (744)
T TIGR02768 463 AE---EAGAKVVLVG 474 (744)
T ss_pred HH---hcCCEEEEEC
Confidence 31 2345566665
No 193
>PRK08181 transposase; Validated
Probab=96.85 E-value=0.0055 Score=58.84 Aligned_cols=21 Identities=24% Similarity=0.373 Sum_probs=17.6
Q ss_pred HhCCCCeeEEccCCCCccchh
Q 013173 179 SIGGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 179 i~~g~d~lv~a~TGsGKT~~~ 199 (448)
+..++++++++|+|+|||-..
T Consensus 103 ~~~~~nlll~Gp~GtGKTHLa 123 (269)
T PRK08181 103 LAKGANLLLFGPPGGGKSHLA 123 (269)
T ss_pred HhcCceEEEEecCCCcHHHHH
Confidence 346789999999999999753
No 194
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=96.81 E-value=0.006 Score=66.28 Aligned_cols=137 Identities=18% Similarity=0.194 Sum_probs=86.4
Q ss_pred CCCCHHHHHHHHHCCCCCCCHHHHhHHhhHhCCCC-eeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEE
Q 013173 150 IDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRD-LMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALI 228 (448)
Q Consensus 150 l~L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d-~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~li 228 (448)
..+.+.+... -+..++.-|++|+-.++.-+| .+|.+=.|+|||..... |-+++-.. +-++|+
T Consensus 656 ~~~~p~~~~~----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~--LIkiL~~~-----------gkkVLL 718 (1100)
T KOG1805|consen 656 KVLIPKIKKI----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISL--LIKILVAL-----------GKKVLL 718 (1100)
T ss_pred cccCchhhHH----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHH--HHHHHHHc-----------CCeEEE
Confidence 3455555543 234688899999999887777 78899999999986433 22222211 234899
Q ss_pred EcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHH-----------------HHHHHhcCccEEEeChHHHHHHHhcc
Q 013173 229 LAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQ-----------------QLRELERGVDILVATPGRLVDLLERA 291 (448)
Q Consensus 229 l~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~-----------------~~~~l~~~~~Ilv~Tp~~l~~~l~~~ 291 (448)
.+=|-.-+..|.-.++.+. +.+.-+-.+..+.. ..++.-+.+.|+.+|--.+.+.|.
T Consensus 719 tsyThsAVDNILiKL~~~~----i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf-- 792 (1100)
T KOG1805|consen 719 TSYTHSAVDNILIKLKGFG----IYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPLF-- 792 (1100)
T ss_pred EehhhHHHHHHHHHHhccC----cceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchhh--
Confidence 9988888888877777753 22211111111222 223333457888888655554443
Q ss_pred cccCCCeeEEEEcCCccccc
Q 013173 292 RVSLQMIRYLALDEADRMLD 311 (448)
Q Consensus 292 ~~~l~~v~~lVlDEah~ll~ 311 (448)
....++|+|||||-.++.
T Consensus 793 --~~R~FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 793 --VNRQFDYCIIDEASQILL 810 (1100)
T ss_pred --hccccCEEEEcccccccc
Confidence 345589999999997754
No 195
>PRK04296 thymidine kinase; Provisional
Probab=96.76 E-value=0.0018 Score=59.00 Aligned_cols=40 Identities=18% Similarity=0.324 Sum_probs=25.0
Q ss_pred eChHHHHHHHhcccccCCCeeEEEEcCCcccccCCCHHHHHHHHHHc
Q 013173 279 ATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQM 325 (448)
Q Consensus 279 ~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l 325 (448)
..+..+++.+.. .-...++||||||+.+- .+++..++..+
T Consensus 63 ~~~~~~~~~~~~---~~~~~dvviIDEaq~l~----~~~v~~l~~~l 102 (190)
T PRK04296 63 SSDTDIFELIEE---EGEKIDCVLIDEAQFLD----KEQVVQLAEVL 102 (190)
T ss_pred CChHHHHHHHHh---hCCCCCEEEEEccccCC----HHHHHHHHHHH
Confidence 444555555543 23567889999998642 25566677665
No 196
>PRK06893 DNA replication initiation factor; Validated
Probab=96.76 E-value=0.0038 Score=58.58 Aligned_cols=48 Identities=17% Similarity=0.273 Sum_probs=30.7
Q ss_pred CCCeeEEEEcCCcccccC-CCHHHHHHHHHHcCCCCCCCcEEEEEeccCchH
Q 013173 295 LQMIRYLALDEADRMLDM-GFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKE 345 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~-gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~ 345 (448)
+.++++|||||+|.+... .+...+..+++.+. ....+++++|++.++.
T Consensus 89 ~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~---~~~~~illits~~~p~ 137 (229)
T PRK06893 89 LEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIK---EQGKTLLLISADCSPH 137 (229)
T ss_pred cccCCEEEEeChhhhcCChHHHHHHHHHHHHHH---HcCCcEEEEeCCCChH
Confidence 346788999999988632 34445666666552 2234567888876444
No 197
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=96.75 E-value=0.0044 Score=65.05 Aligned_cols=158 Identities=18% Similarity=0.279 Sum_probs=100.0
Q ss_pred HHHHhHHhhHh----CCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013173 170 PVQRHAIPISI----GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK 245 (448)
Q Consensus 170 ~~Q~~~i~~i~----~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~ 245 (448)
.+|...+..+. .|=|-|+.-..|-|||... +.+|.++..... .-+| -|||+|...|-+. +.++.+
T Consensus 570 EYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQs-isvlAhLaE~~n--------IwGP-FLVVtpaStL~NW-aqEisr 638 (1185)
T KOG0388|consen 570 EYQLKGLNWLVNLYDQGINGILADEMGLGKTVQS-ISVLAHLAETHN--------IWGP-FLVVTPASTLHNW-AQEISR 638 (1185)
T ss_pred HHhhccHHHHHHHHHccccceehhhhccchhHHH-HHHHHHHHHhcc--------CCCc-eEEeehHHHHhHH-HHHHHH
Confidence 46777666543 5778899999999999974 556666665432 2233 4889998888655 666777
Q ss_pred hcccCCcEEEEEECCCChHHHHHHH---------hcCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcccccCCCHH
Q 013173 246 FSYQTGVKVVVAYGGAPINQQLREL---------ERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEP 316 (448)
Q Consensus 246 ~~~~~~~~~~~~~gg~~~~~~~~~l---------~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~ 316 (448)
|+ +.++++-..|+.......++. ..+.+|+|+|.+.++.- ...+.--...|.|||||..+-... ..
T Consensus 639 Fl--P~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtD--eky~qkvKWQYMILDEAQAIKSSs-S~ 713 (1185)
T KOG0388|consen 639 FL--PSFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTD--EKYLQKVKWQYMILDEAQAIKSSS-SS 713 (1185)
T ss_pred hC--ccceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeech--HHHHHhhhhhheehhHHHHhhhhh-hh
Confidence 75 467888888887766555542 22479999998766421 111112235789999999885432 22
Q ss_pred HHHHHHHHcCCCCCCCcEEEEEeccC-chHHHHH
Q 013173 317 QIRKIVQQMDMPPPGMRQTMLFSATF-PKEIQRL 349 (448)
Q Consensus 317 ~i~~i~~~l~~~~~~~~q~i~~SAT~-~~~v~~l 349 (448)
-+..++..- .+--+++|.|. -..+++|
T Consensus 714 RWKtLLsF~------cRNRLLLTGTPIQNsMqEL 741 (1185)
T KOG0388|consen 714 RWKTLLSFK------CRNRLLLTGTPIQNSMQEL 741 (1185)
T ss_pred HHHHHhhhh------ccceeeecCCccchHHHHH
Confidence 333333321 23358889986 3444443
No 198
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.75 E-value=0.011 Score=50.00 Aligned_cols=18 Identities=28% Similarity=0.488 Sum_probs=15.7
Q ss_pred CCCeeEEccCCCCccchh
Q 013173 182 GRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 182 g~d~lv~a~TGsGKT~~~ 199 (448)
++.+++.+++|+|||...
T Consensus 19 ~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 678999999999999743
No 199
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.74 E-value=0.088 Score=63.72 Aligned_cols=230 Identities=10% Similarity=0.121 Sum_probs=121.4
Q ss_pred CCCHHHHhHHhhHhCC--CCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q 013173 167 KPTPVQRHAIPISIGG--RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAK 244 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~~g--~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~ 244 (448)
.+++-|+.++..++.. +-.++.++.|+|||.+.. .++ .+.+. .+..+++++||-.-+..+.+...
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~-~l~-~~~~~-----------~G~~V~~lAPTgrAA~~L~e~~g 495 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQ-LLL-HLASE-----------QGYEIQIITAGSLSAQELRQKIP 495 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHH-HHH-HHHHh-----------cCCeEEEEeCCHHHHHHHHHHhc
Confidence 5788999999988865 558999999999998532 233 33322 13459999999987766655432
Q ss_pred HhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcccccCCCHHHHHHHHHH
Q 013173 245 KFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQ 324 (448)
Q Consensus 245 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~ 324 (448)
..+ ..+......+... .-..|...|+ .....+..-++||||||-++.. .++..++..
T Consensus 496 ~~A-------------~Ti~~~l~~l~~~--~~~~tv~~fl----~~~~~l~~~~vlIVDEAsMl~~----~~~~~Ll~~ 552 (1960)
T TIGR02760 496 RLA-------------STFITWVKNLFND--DQDHTVQGLL----DKSSPFSNKDIFVVDEANKLSN----NELLKLIDK 552 (1960)
T ss_pred chh-------------hhHHHHHHhhccc--ccchhHHHhh----cccCCCCCCCEEEEECCCCCCH----HHHHHHHHH
Confidence 211 1111111111111 1112222232 1222356678999999996543 566667665
Q ss_pred cCCCCCCCcEEEEEeccC------chHHHHHHHhhh-cCcEEEEecccccccCceeEEEEEecccchHHHHHHHHHHHHh
Q 013173 325 MDMPPPGMRQTMLFSATF------PKEIQRLASDFL-ANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVA 397 (448)
Q Consensus 325 l~~~~~~~~q~i~~SAT~------~~~v~~l~~~~l-~~~~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~ 397 (448)
.. +...++|++-=+- +-.+..++...- .-.....+.+.. ..+ .+...++..+...+.+.+.....
T Consensus 553 a~---~~garvVlvGD~~QL~sV~aG~~f~~L~~~gv~t~~l~~i~rq~---~~v--~i~~~~~~~r~~~ia~~y~~L~~ 624 (1960)
T TIGR02760 553 AE---QHNSKLILLNDSAQRQGMSAGSAIDLLKEGGVTTYAWVDTKQQK---ASV--EISEAVDKLRVDYIASAWLDLTP 624 (1960)
T ss_pred Hh---hcCCEEEEEcChhhcCccccchHHHHHHHCCCcEEEeecccccC---cce--eeeccCchHHHHHHHHHHHhccc
Confidence 52 3456788776552 223343333321 111111111111 111 12222233333334333332221
Q ss_pred cCCCCCCCcEEEEeCchhhHHHHHHHHHH----CC------CCeEEec-CCCCHHHHHH
Q 013173 398 NGVHGKQALTLVFVETKKGADALEHWLYM----NG------FPATTIH-GDRTQQRTSI 445 (448)
Q Consensus 398 ~~~~~~~~~tlVF~~t~~~a~~l~~~L~~----~g------~~~~~iH-g~~~q~eR~~ 445 (448)
....++||..+.+..+.|....+. .| +....+- -+|++.++..
T Consensus 625 -----~r~~tliv~~t~~dr~~Ln~~iR~~L~~~G~L~~~~~~~~~L~p~~lt~~e~r~ 678 (1960)
T TIGR02760 625 -----DRQNSQVLATTHREQQDLTQIIRNALKQEGQLSRQEVTVPTLKPVNLTGIQRRN 678 (1960)
T ss_pred -----ccCceEEEcCCcHHHHHHHHHHHHHHHHcCCcCCCceEEEEeccCCCCHHHHhh
Confidence 245699999998888888877653 22 3333443 4677777754
No 200
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=96.72 E-value=0.0031 Score=61.56 Aligned_cols=104 Identities=19% Similarity=0.124 Sum_probs=63.7
Q ss_pred CCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhc
Q 013173 168 PTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFS 247 (448)
Q Consensus 168 pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~ 247 (448)
+|+-|..+|.. ...+++|.|..|||||.+.+-=++..+...+ ....++|+|++|+..+..+.+.+....
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~---------~~~~~Il~lTft~~aa~e~~~ri~~~l 69 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG---------VPPERILVLTFTNAAAQEMRERIRELL 69 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS---------STGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhcccc---------CChHHheecccCHHHHHHHHHHHHHhc
Confidence 47889999987 7789999999999999986554444343321 112349999999999999999998864
Q ss_pred ccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHH
Q 013173 248 YQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLL 288 (448)
Q Consensus 248 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l 288 (448)
...... ................+.|.|-..+...+
T Consensus 70 ~~~~~~------~~~~~~~~~~~~~~~~~~i~T~hsf~~~l 104 (315)
T PF00580_consen 70 EEEQQE------SSDNERLRRQLSNIDRIYISTFHSFCYRL 104 (315)
T ss_dssp HHCCHC------CTT-HHHHHHHHHCTTSEEEEHHHHHHHH
T ss_pred Cccccc------ccccccccccccccchheeehhhhhhhhh
Confidence 321110 00000111122223567888877765533
No 201
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.69 E-value=0.0079 Score=66.43 Aligned_cols=45 Identities=16% Similarity=0.314 Sum_probs=27.3
Q ss_pred CCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHH
Q 013173 296 QMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEI 346 (448)
Q Consensus 296 ~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v 346 (448)
...+++||||||+|... ....|++.|+.+ +....+|++ +|-+..+
T Consensus 119 ~~~KV~IIDEad~lt~~----a~NaLLK~LEEp-P~~~~fIl~-tt~~~kL 163 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQ----GFNALLKIVEEP-PEHLKFIFA-TTEPDKV 163 (824)
T ss_pred CCceEEEEechhhcCHH----HHHHHHHHHhCC-CCCeEEEEE-eCChhhh
Confidence 56789999999999763 334455555544 344444444 3544443
No 202
>PRK05642 DNA replication initiation factor; Validated
Probab=96.64 E-value=0.0051 Score=57.96 Aligned_cols=45 Identities=16% Similarity=0.318 Sum_probs=28.0
Q ss_pred CCeeEEEEcCCcccccC-CCHHHHHHHHHHcCCCCCCCcEEEEEeccCch
Q 013173 296 QMIRYLALDEADRMLDM-GFEPQIRKIVQQMDMPPPGMRQTMLFSATFPK 344 (448)
Q Consensus 296 ~~v~~lVlDEah~ll~~-gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~ 344 (448)
.++++||||++|.+... .+...+..+++.+. ...++ ++++++.++
T Consensus 96 ~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~---~~g~~-ilits~~~p 141 (234)
T PRK05642 96 EQYELVCLDDLDVIAGKADWEEALFHLFNRLR---DSGRR-LLLAASKSP 141 (234)
T ss_pred hhCCEEEEechhhhcCChHHHHHHHHHHHHHH---hcCCE-EEEeCCCCH
Confidence 45578999999977432 34566777777662 22344 566666543
No 203
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.64 E-value=0.0031 Score=65.08 Aligned_cols=74 Identities=23% Similarity=0.244 Sum_probs=43.4
Q ss_pred hcCccEEEeChHHHHHHHhccc---c---cCCCeeEE-EEcCCcccccCC---------CHHHHHHHHHHcCCCCCCCcE
Q 013173 271 ERGVDILVATPGRLVDLLERAR---V---SLQMIRYL-ALDEADRMLDMG---------FEPQIRKIVQQMDMPPPGMRQ 334 (448)
Q Consensus 271 ~~~~~Ilv~Tp~~l~~~l~~~~---~---~l~~v~~l-VlDEah~ll~~g---------f~~~i~~i~~~l~~~~~~~~q 334 (448)
.++..|.++|.+.|...+.+.+ + ++.+.++| +-||||++-... -...++..+..-.. ..++.-
T Consensus 79 nd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~-~nkd~~ 157 (812)
T COG3421 79 NDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALE-QNKDNL 157 (812)
T ss_pred CCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHh-cCCCce
Confidence 3467899999999988775433 2 45555554 569999984321 11112222211111 133445
Q ss_pred EEEEeccCchH
Q 013173 335 TMLFSATFPKE 345 (448)
Q Consensus 335 ~i~~SAT~~~~ 345 (448)
++.||||++++
T Consensus 158 ~lef~at~~k~ 168 (812)
T COG3421 158 LLEFSATIPKE 168 (812)
T ss_pred eehhhhcCCcc
Confidence 88999999944
No 204
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.60 E-value=0.017 Score=57.17 Aligned_cols=50 Identities=10% Similarity=0.116 Sum_probs=28.1
Q ss_pred CCCeeEEEEcCCcccccCCC-HHHHHHHHHHcCCCCCCCcEEEEEeccCchHHH
Q 013173 295 LQMIRYLALDEADRMLDMGF-EPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQ 347 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf-~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~ 347 (448)
+.++++||||+.+......| ...+..|+...- .....+|+.|-.-+.++.
T Consensus 244 l~~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~---~~~k~tIiTSNl~~~el~ 294 (329)
T PRK06835 244 LINCDLLIIDDLGTEKITEFSKSELFNLINKRL---LRQKKMIISTNLSLEELL 294 (329)
T ss_pred hccCCEEEEeccCCCCCCHHHHHHHHHHHHHHH---HCCCCEEEECCCCHHHHH
Confidence 45678899999987643332 345555665541 122345554444455553
No 205
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.56 E-value=0.0084 Score=58.79 Aligned_cols=148 Identities=16% Similarity=0.216 Sum_probs=83.0
Q ss_pred CCCCCCCHHHHhHHhhHhCCCC--eeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHH
Q 013173 163 CKYVKPTPVQRHAIPISIGGRD--LMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIH 240 (448)
Q Consensus 163 ~~~~~pt~~Q~~~i~~i~~g~d--~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~ 240 (448)
.|+.--+..|.-|+..++...- |.+.++-|||||+.++-..|...+..+. +-++||.=|+..+-..|
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~----------y~KiiVtRp~vpvG~dI- 292 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKR----------YRKIIVTRPTVPVGEDI- 292 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhh----------hceEEEecCCcCccccc-
Confidence 3665566778888888875532 7789999999999988888887776542 33477777877665332
Q ss_pred HHHHHhcccCCcEEEEEECC-CChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCe----------eEEEEcCCccc
Q 013173 241 VEAKKFSYQTGVKVVVAYGG-APINQQLRELERGVDILVATPGRLVDLLERARVSLQMI----------RYLALDEADRM 309 (448)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~gg-~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v----------~~lVlDEah~l 309 (448)
++-+|.+-..+.-- .++......+.. .==++-+.|...+.+..+.+..+ .|+|||||..+
T Consensus 293 ------GfLPG~eEeKm~PWmq~i~DnLE~L~~---~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNL 363 (436)
T COG1875 293 ------GFLPGTEEEKMGPWMQAIFDNLEVLFS---PNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNL 363 (436)
T ss_pred ------CcCCCchhhhccchHHHHHhHHHHHhc---ccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhcc
Confidence 11111110000000 000111111111 11112344445555544432221 58999999977
Q ss_pred ccCCCHHHHHHHHHHcCCCCCCCcEEEEE
Q 013173 310 LDMGFEPQIRKIVQQMDMPPPGMRQTMLF 338 (448)
Q Consensus 310 l~~gf~~~i~~i~~~l~~~~~~~~q~i~~ 338 (448)
-. .++..|+.+. -...+++++
T Consensus 364 Tp----heikTiltR~----G~GsKIVl~ 384 (436)
T COG1875 364 TP----HELKTILTRA----GEGSKIVLT 384 (436)
T ss_pred CH----HHHHHHHHhc----cCCCEEEEc
Confidence 44 7889999888 344456553
No 206
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=96.51 E-value=0.013 Score=65.65 Aligned_cols=135 Identities=23% Similarity=0.242 Sum_probs=86.8
Q ss_pred CCCCHHHHhHHhhHh-----CCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHH
Q 013173 166 VKPTPVQRHAIPISI-----GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIH 240 (448)
Q Consensus 166 ~~pt~~Q~~~i~~i~-----~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~ 240 (448)
..+.++|...+..+. .+.+.++....|.|||+..+..+.. +..... ...+.+||+||+..+ .++.
T Consensus 337 ~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~-~~~~~~--------~~~~~~liv~p~s~~-~nw~ 406 (866)
T COG0553 337 AELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLS-LLESIK--------VYLGPALIVVPASLL-SNWK 406 (866)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHh-hhhccc--------CCCCCeEEEecHHHH-HHHH
Confidence 457788999887644 3667888899999999876544443 222110 113458999997665 5556
Q ss_pred HHHHHhcccCCcEEEEEECCCCh----HHHHHHHhcC-----ccEEEeChHHHHHHH-hcccccCCCeeEEEEcCCcccc
Q 013173 241 VEAKKFSYQTGVKVVVAYGGAPI----NQQLRELERG-----VDILVATPGRLVDLL-ERARVSLQMIRYLALDEADRML 310 (448)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~gg~~~----~~~~~~l~~~-----~~Ilv~Tp~~l~~~l-~~~~~~l~~v~~lVlDEah~ll 310 (448)
+++.+|...... +...+|.... .+....+... .+|+++|.+.|...+ ....+.-....++|+||||++-
T Consensus 407 ~e~~k~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ik 485 (866)
T COG0553 407 REFEKFAPDLRL-VLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIK 485 (866)
T ss_pred HHHhhhCccccc-eeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHh
Confidence 777887654332 5555555431 3444444332 789999999988743 1223344567889999999965
Q ss_pred c
Q 013173 311 D 311 (448)
Q Consensus 311 ~ 311 (448)
.
T Consensus 486 n 486 (866)
T COG0553 486 N 486 (866)
T ss_pred h
Confidence 4
No 207
>PRK14974 cell division protein FtsY; Provisional
Probab=96.50 E-value=0.034 Score=55.10 Aligned_cols=55 Identities=22% Similarity=0.210 Sum_probs=39.3
Q ss_pred CCeeEEEEcCCcccc-cCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhh
Q 013173 296 QMIRYLALDEADRML-DMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFL 354 (448)
Q Consensus 296 ~~v~~lVlDEah~ll-~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l 354 (448)
...++|++|.+.++- +..+..++..+...+ .++.-++.++||...+....+..|.
T Consensus 221 ~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~----~pd~~iLVl~a~~g~d~~~~a~~f~ 276 (336)
T PRK14974 221 RGIDVVLIDTAGRMHTDANLMDELKKIVRVT----KPDLVIFVGDALAGNDAVEQAREFN 276 (336)
T ss_pred CCCCEEEEECCCccCCcHHHHHHHHHHHHhh----CCceEEEeeccccchhHHHHHHHHH
Confidence 345789999999885 334556777776655 3456688999998777776676664
No 208
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.39 E-value=0.2 Score=51.44 Aligned_cols=130 Identities=22% Similarity=0.263 Sum_probs=66.1
Q ss_pred CCCeeEEccCCCCccchhhhhHHHHH-hhhhcccCCCCCCCCCceEEEEcCc-HHHHHHHHHHHHHhcccCCcEEEEEEC
Q 013173 182 GRDLMACAQTGSGKTAAFCFPIISGI-MREQYVQRPRGSRTVYPLALILAPT-RELSSQIHVEAKKFSYQTGVKVVVAYG 259 (448)
Q Consensus 182 g~d~lv~a~TGsGKT~~~~lpil~~l-~~~~~~~~~~~~~~~~~~~lil~Pt-reL~~qi~~~~~~~~~~~~~~~~~~~g 259 (448)
++.+++.+|||+|||+...--+.... ...+ ...++|-+.+ |.-+ .+.++.++...++.+..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g-----------~~V~li~~D~~r~~a---~eqL~~~a~~~~vp~~~--- 283 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGK-----------KKVALITLDTYRIGA---VEQLKTYAKIMGIPVEV--- 283 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-----------CeEEEEECCccHHHH---HHHHHHHHHHhCCceEc---
Confidence 56789999999999986432222111 1111 1124444443 3222 23444444333333322
Q ss_pred CCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCccccc-CCCHHHHHHHHHHcCCCCCCCcEEEEE
Q 013173 260 GAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLD-MGFEPQIRKIVQQMDMPPPGMRQTMLF 338 (448)
Q Consensus 260 g~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~-~gf~~~i~~i~~~l~~~~~~~~q~i~~ 338 (448)
+.++..+...+.. +...++||||.+-+... ......+..++... .......+++
T Consensus 284 ------------------~~~~~~l~~~l~~----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~---~~~~~~~LVl 338 (424)
T PRK05703 284 ------------------VYDPKELAKALEQ----LRDCDVILIDTAGRSQRDKRLIEELKALIEFS---GEPIDVYLVL 338 (424)
T ss_pred ------------------cCCHHhHHHHHHH----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhcc---CCCCeEEEEE
Confidence 2344445544442 34578899998865422 11223444444421 1223457889
Q ss_pred eccCc-hHHHHHHHhh
Q 013173 339 SATFP-KEIQRLASDF 353 (448)
Q Consensus 339 SAT~~-~~v~~l~~~~ 353 (448)
|||.. .++.+++..|
T Consensus 339 ~a~~~~~~l~~~~~~f 354 (424)
T PRK05703 339 SATTKYEDLKDIYKHF 354 (424)
T ss_pred ECCCCHHHHHHHHHHh
Confidence 99886 4556666555
No 209
>PRK06921 hypothetical protein; Provisional
Probab=96.37 E-value=0.047 Score=52.42 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=19.1
Q ss_pred CCCCeeEEccCCCCccchhhhhHHHHHh
Q 013173 181 GGRDLMACAQTGSGKTAAFCFPIISGIM 208 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~~lpil~~l~ 208 (448)
.+..+++.+++|+|||... ..+...+.
T Consensus 116 ~~~~l~l~G~~G~GKThLa-~aia~~l~ 142 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLL-TAAANELM 142 (266)
T ss_pred CCCeEEEECCCCCcHHHHH-HHHHHHHh
Confidence 3577999999999999753 23344443
No 210
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.36 E-value=0.0097 Score=51.70 Aligned_cols=17 Identities=35% Similarity=0.429 Sum_probs=14.1
Q ss_pred eeEEccCCCCccchhhh
Q 013173 185 LMACAQTGSGKTAAFCF 201 (448)
Q Consensus 185 ~lv~a~TGsGKT~~~~l 201 (448)
+++++++|+|||.....
T Consensus 2 ~~i~G~~G~GKT~l~~~ 18 (165)
T cd01120 2 ILVFGPTGSGKTTLALQ 18 (165)
T ss_pred eeEeCCCCCCHHHHHHH
Confidence 68999999999996543
No 211
>PRK08727 hypothetical protein; Validated
Probab=96.31 E-value=0.016 Score=54.61 Aligned_cols=49 Identities=10% Similarity=0.084 Sum_probs=27.8
Q ss_pred CCeeEEEEcCCcccccCC-CHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHH
Q 013173 296 QMIRYLALDEADRMLDMG-FEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQ 347 (448)
Q Consensus 296 ~~v~~lVlDEah~ll~~g-f~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~ 347 (448)
.++++|||||+|.+.... ....+-.+++.+. ....++|+.|-..|.++.
T Consensus 92 ~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~---~~~~~vI~ts~~~p~~l~ 141 (233)
T PRK08727 92 EGRSLVALDGLESIAGQREDEVALFDFHNRAR---AAGITLLYTARQMPDGLA 141 (233)
T ss_pred hcCCEEEEeCcccccCChHHHHHHHHHHHHHH---HcCCeEEEECCCChhhhh
Confidence 455689999999886432 3334445555542 123445555555555553
No 212
>PRK08116 hypothetical protein; Validated
Probab=96.30 E-value=0.082 Score=50.84 Aligned_cols=50 Identities=14% Similarity=0.111 Sum_probs=28.1
Q ss_pred CCCeeEEEEcCCccc--ccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHH
Q 013173 295 LQMIRYLALDEADRM--LDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQR 348 (448)
Q Consensus 295 l~~v~~lVlDEah~l--l~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~ 348 (448)
+.++++|||||++.. .++ ....+..|+...- .....+|+.|-..+.++..
T Consensus 176 l~~~dlLviDDlg~e~~t~~-~~~~l~~iin~r~---~~~~~~IiTsN~~~~eL~~ 227 (268)
T PRK08116 176 LVNADLLILDDLGAERDTEW-AREKVYNIIDSRY---RKGLPTIVTTNLSLEELKN 227 (268)
T ss_pred hcCCCEEEEecccCCCCCHH-HHHHHHHHHHHHH---HCCCCEEEECCCCHHHHHH
Confidence 456678999999643 222 2344555655441 2234566666655666543
No 213
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.24 E-value=0.026 Score=54.08 Aligned_cols=19 Identities=21% Similarity=0.230 Sum_probs=15.9
Q ss_pred CCCeeEEccCCCCccchhh
Q 013173 182 GRDLMACAQTGSGKTAAFC 200 (448)
Q Consensus 182 g~d~lv~a~TGsGKT~~~~ 200 (448)
..++++.+|+|+|||...-
T Consensus 42 ~~~vll~GppGtGKTtlA~ 60 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVAR 60 (261)
T ss_pred cceEEEEcCCCCCHHHHHH
Confidence 3578999999999998654
No 214
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.23 E-value=0.015 Score=54.13 Aligned_cols=20 Identities=35% Similarity=0.499 Sum_probs=16.6
Q ss_pred CCCCeeEEccCCCCccchhh
Q 013173 181 GGRDLMACAQTGSGKTAAFC 200 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~~ 200 (448)
....+++.+++|+|||....
T Consensus 37 ~~~~lll~G~~G~GKT~la~ 56 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQ 56 (226)
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 45689999999999998643
No 215
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.23 E-value=0.011 Score=54.14 Aligned_cols=82 Identities=17% Similarity=0.168 Sum_probs=46.6
Q ss_pred CCeeEEEEcCCccccc-CCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcC--cEEEEecccccccCce
Q 013173 296 QMIRYLALDEADRMLD-MGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLAN--YIFLAVGRVGSSTDLI 372 (448)
Q Consensus 296 ~~v~~lVlDEah~ll~-~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~--~~~i~v~~~~~~~~~i 372 (448)
++.++|+||-+-+... .....++..++..+ .+..-.+.+|||...+....+..|... +-.+
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~----~~~~~~LVlsa~~~~~~~~~~~~~~~~~~~~~l------------ 145 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEAL----NPDEVHLVLSATMGQEDLEQALAFYEAFGIDGL------------ 145 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHH----SSSEEEEEEEGGGGGHHHHHHHHHHHHSSTCEE------------
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhc----CCccceEEEecccChHHHHHHHHHhhcccCceE------------
Confidence 4466788888765432 12345666677776 444558899999976655555554321 1111
Q ss_pred eEEEEEecccchHHHHHHHHHHH
Q 013173 373 VQRVEFVHESDKRSHLMDLLHAQ 395 (448)
Q Consensus 373 ~q~~~~~~~~~k~~~L~~ll~~~ 395 (448)
.+..+++..+.-.++.++...
T Consensus 146 --IlTKlDet~~~G~~l~~~~~~ 166 (196)
T PF00448_consen 146 --ILTKLDETARLGALLSLAYES 166 (196)
T ss_dssp --EEESTTSSSTTHHHHHHHHHH
T ss_pred --EEEeecCCCCcccceeHHHHh
Confidence 223445555666677766664
No 216
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.23 E-value=0.012 Score=55.56 Aligned_cols=43 Identities=12% Similarity=0.247 Sum_probs=25.4
Q ss_pred eeEEEEcCCccccc-CCCHHHHHHHHHHcCCCCCCCcEEEEEeccCc
Q 013173 298 IRYLALDEADRMLD-MGFEPQIRKIVQQMDMPPPGMRQTMLFSATFP 343 (448)
Q Consensus 298 v~~lVlDEah~ll~-~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~ 343 (448)
+++|||||+|.+.. ..+...+..++..+.. ....++++ |++.+
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e--~g~~~li~-ts~~~ 141 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILE--SGRTRLLI-TGDRP 141 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHH--cCCCeEEE-eCCCC
Confidence 46899999998853 2355566666666521 11234554 55544
No 217
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.22 E-value=0.2 Score=50.56 Aligned_cols=100 Identities=12% Similarity=0.199 Sum_probs=53.7
Q ss_pred eChHHHHHHHhcccccCCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccC-chHHHHHHHhhhcCc
Q 013173 279 ATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATF-PKEIQRLASDFLANY 357 (448)
Q Consensus 279 ~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~-~~~v~~l~~~~l~~~ 357 (448)
.+|..+.+.+....- -.+.++|+||-+=+.... ...+..+...+....+ ..-.+.+|||. ..++...+..|-.-
T Consensus 303 ~d~~~L~~aL~~lk~-~~~~DvVLIDTaGRs~kd--~~lm~EL~~~lk~~~P-devlLVLsATtk~~d~~~i~~~F~~~- 377 (436)
T PRK11889 303 RDEAAMTRALTYFKE-EARVDYILIDTAGKNYRA--SETVEEMIETMGQVEP-DYICLTLSASMKSKDMIEIITNFKDI- 377 (436)
T ss_pred CCHHHHHHHHHHHHh-ccCCCEEEEeCccccCcC--HHHHHHHHHHHhhcCC-CeEEEEECCccChHHHHHHHHHhcCC-
Confidence 466666665543211 124688999988775432 2344444444432223 33467799976 45667777766320
Q ss_pred EEEEecccccccCceeEEEEEecccchHHHHHHHHHHH
Q 013173 358 IFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQ 395 (448)
Q Consensus 358 ~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~ 395 (448)
..-.-.+..+++..+.-.++.++...
T Consensus 378 ------------~idglI~TKLDET~k~G~iLni~~~~ 403 (436)
T PRK11889 378 ------------HIDGIVFTKFDETASSGELLKIPAVS 403 (436)
T ss_pred ------------CCCEEEEEcccCCCCccHHHHHHHHH
Confidence 00111233455566666666666654
No 218
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.22 E-value=0.27 Score=49.41 Aligned_cols=133 Identities=18% Similarity=0.277 Sum_probs=70.5
Q ss_pred CCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECC
Q 013173 181 GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGG 260 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg 260 (448)
.++.+++++|||.|||+.. .=|...+... ..+.-.+||...|--.. -++.++.|+...++.+.+++..
T Consensus 202 ~~~vi~LVGPTGVGKTTTl--AKLAar~~~~--------~~~~kVaiITtDtYRIG--A~EQLk~Ya~im~vp~~vv~~~ 269 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTL--AKLAARYVML--------KKKKKVAIITTDTYRIG--AVEQLKTYADIMGVPLEVVYSP 269 (407)
T ss_pred cCcEEEEECCCCCcHHHHH--HHHHHHHHhh--------ccCcceEEEEeccchhh--HHHHHHHHHHHhCCceEEecCH
Confidence 3788999999999999853 2222222200 01223477777665433 2455666666666766666544
Q ss_pred CChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEec
Q 013173 261 APINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSA 340 (448)
Q Consensus 261 ~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SA 340 (448)
....+.+.. +.++++|.||=+-+-.-. ...+.++-..++-. ...--.+.+||
T Consensus 270 ~el~~ai~~-------------------------l~~~d~ILVDTaGrs~~D--~~~i~el~~~~~~~-~~i~~~Lvlsa 321 (407)
T COG1419 270 KELAEAIEA-------------------------LRDCDVILVDTAGRSQYD--KEKIEELKELIDVS-HSIEVYLVLSA 321 (407)
T ss_pred HHHHHHHHH-------------------------hhcCCEEEEeCCCCCccC--HHHHHHHHHHHhcc-ccceEEEEEec
Confidence 333333333 444556666655432110 12333333333222 23334688899
Q ss_pred cCc-hHHHHHHHhh
Q 013173 341 TFP-KEIQRLASDF 353 (448)
Q Consensus 341 T~~-~~v~~l~~~~ 353 (448)
|.. .++++....|
T Consensus 322 t~K~~dlkei~~~f 335 (407)
T COG1419 322 TTKYEDLKEIIKQF 335 (407)
T ss_pred CcchHHHHHHHHHh
Confidence 874 5556666655
No 219
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.22 E-value=0.0073 Score=50.57 Aligned_cols=19 Identities=32% Similarity=0.445 Sum_probs=16.0
Q ss_pred CCCeeEEccCCCCccchhh
Q 013173 182 GRDLMACAQTGSGKTAAFC 200 (448)
Q Consensus 182 g~d~lv~a~TGsGKT~~~~ 200 (448)
+..+++.+|+|+|||....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~ 20 (148)
T smart00382 2 GEVILIVGPPGSGKTTLAR 20 (148)
T ss_pred CCEEEEECCCCCcHHHHHH
Confidence 4678999999999999643
No 220
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.15 E-value=0.054 Score=56.37 Aligned_cols=45 Identities=11% Similarity=0.239 Sum_probs=28.4
Q ss_pred CCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchH
Q 013173 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKE 345 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~ 345 (448)
....+++||||+|.|.. .....+++.+..++ ....+ +|.+|-...
T Consensus 114 ~~~~KVvIIDEah~Ls~----~A~NaLLK~LEePp-~~v~f-Ilatte~~K 158 (491)
T PRK14964 114 SSKFKVYIIDEVHMLSN----SAFNALLKTLEEPA-PHVKF-ILATTEVKK 158 (491)
T ss_pred cCCceEEEEeChHhCCH----HHHHHHHHHHhCCC-CCeEE-EEEeCChHH
Confidence 45778999999998865 34556667776654 33434 444454333
No 221
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.14 E-value=0.015 Score=59.31 Aligned_cols=33 Identities=15% Similarity=0.150 Sum_probs=26.1
Q ss_pred CCHHHHhHHhhHhCCCCeeEEccCCCCccchhh
Q 013173 168 PTPVQRHAIPISIGGRDLMACAQTGSGKTAAFC 200 (448)
Q Consensus 168 pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~ 200 (448)
|-......+..+..++++++++++|+|||....
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 444555666777789999999999999998654
No 222
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.12 E-value=0.07 Score=50.51 Aligned_cols=51 Identities=22% Similarity=0.333 Sum_probs=30.5
Q ss_pred CCCeeEEEEcCCcccccCCCHH-HHHHHHHHcCCCCCCCcEEEEEeccCchHHHH
Q 013173 295 LQMIRYLALDEADRMLDMGFEP-QIRKIVQQMDMPPPGMRQTMLFSATFPKEIQR 348 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~-~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~ 348 (448)
+.++++|||||++......|.. .+..|+...- .....|++.|---+.++..
T Consensus 160 l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry---~~~~~tiitSNl~~~~l~~ 211 (244)
T PRK07952 160 LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRS---SSKRPTGMLTNSNMEEMTK 211 (244)
T ss_pred hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHH---hCCCCEEEeCCCCHHHHHH
Confidence 4578899999999876544544 3445665431 2234466666555555543
No 223
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.10 E-value=0.13 Score=52.43 Aligned_cols=133 Identities=16% Similarity=0.184 Sum_probs=63.7
Q ss_pred CCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECC
Q 013173 181 GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGG 260 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg 260 (448)
.+.-+.++++||+|||+....-+-..+.... .....++.+.+.-.. ..+.+..|+...++.+..+..
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~----------~~~v~~i~~d~~rig--alEQL~~~a~ilGvp~~~v~~- 256 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHG----------ADKVALLTTDSYRIG--GHEQLRIYGKLLGVSVRSIKD- 256 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC----------CCeEEEEecCCcchh--HHHHHHHHHHHcCCceecCCC-
Confidence 3556889999999999965432211221111 011256666663321 122244444444444433322
Q ss_pred CChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEec
Q 013173 261 APINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSA 340 (448)
Q Consensus 261 ~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SA 340 (448)
+..+...+. .+.+.+++++|.+-+.- ....+..-+..+.........++.+||
T Consensus 257 --------------------~~dl~~al~----~l~~~d~VLIDTaGrsq---rd~~~~~~l~~l~~~~~~~~~~LVl~a 309 (420)
T PRK14721 257 --------------------IADLQLMLH----ELRGKHMVLIDTVGMSQ---RDQMLAEQIAMLSQCGTQVKHLLLLNA 309 (420)
T ss_pred --------------------HHHHHHHHH----HhcCCCEEEecCCCCCc---chHHHHHHHHHHhccCCCceEEEEEcC
Confidence 222222222 24556778888763221 112222222233222233455788999
Q ss_pred cC-chHHHHHHHhh
Q 013173 341 TF-PKEIQRLASDF 353 (448)
Q Consensus 341 T~-~~~v~~l~~~~ 353 (448)
|. ...+.+.+..|
T Consensus 310 t~~~~~~~~~~~~f 323 (420)
T PRK14721 310 TSSGDTLDEVISAY 323 (420)
T ss_pred CCCHHHHHHHHHHh
Confidence 97 44556666555
No 224
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=95.97 E-value=0.017 Score=53.75 Aligned_cols=50 Identities=16% Similarity=0.232 Sum_probs=33.4
Q ss_pred CCCeeEEEEcCCcccccC-CCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHH
Q 013173 295 LQMIRYLALDEADRMLDM-GFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQ 347 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~-gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~ 347 (448)
+..+++||||++|.+... .+...+..+++.+. ....|+|+.|...|.++.
T Consensus 95 ~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~---~~~k~li~ts~~~P~~l~ 145 (219)
T PF00308_consen 95 LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLI---ESGKQLILTSDRPPSELS 145 (219)
T ss_dssp HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHH---HTTSEEEEEESS-TTTTT
T ss_pred hhcCCEEEEecchhhcCchHHHHHHHHHHHHHH---hhCCeEEEEeCCCCcccc
Confidence 456788999999988653 24456666666663 334678877777777654
No 225
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=95.93 E-value=0.032 Score=60.33 Aligned_cols=17 Identities=24% Similarity=0.268 Sum_probs=14.4
Q ss_pred eeEEccCCCCccchhhh
Q 013173 185 LMACAQTGSGKTAAFCF 201 (448)
Q Consensus 185 ~lv~a~TGsGKT~~~~l 201 (448)
+|++++.|+|||.+..+
T Consensus 41 yLFtGPpGvGKTTlAri 57 (830)
T PRK07003 41 YLFTGTRGVGKTTLSRI 57 (830)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68999999999986543
No 226
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.89 E-value=0.044 Score=55.67 Aligned_cols=18 Identities=22% Similarity=0.442 Sum_probs=15.6
Q ss_pred CCCeeEEccCCCCccchh
Q 013173 182 GRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 182 g~d~lv~a~TGsGKT~~~ 199 (448)
..++++.+++|+|||...
T Consensus 55 ~~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 55 PLNVLIYGPPGTGKTTTV 72 (394)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 367999999999999964
No 227
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=95.88 E-value=0.042 Score=56.77 Aligned_cols=52 Identities=8% Similarity=0.216 Sum_probs=31.7
Q ss_pred CCeeEEEEcCCcccccCC-CHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHH
Q 013173 296 QMIRYLALDEADRMLDMG-FEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLA 350 (448)
Q Consensus 296 ~~v~~lVlDEah~ll~~g-f~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~ 350 (448)
.++++|+|||+|.+.... ....+..+++.+. ....|+|+.|-+.|.++..+.
T Consensus 201 ~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~---~~~k~IIlts~~~p~~l~~l~ 253 (445)
T PRK12422 201 RNVDALFIEDIEVFSGKGATQEEFFHTFNSLH---TEGKLIVISSTCAPQDLKAME 253 (445)
T ss_pred ccCCEEEEcchhhhcCChhhHHHHHHHHHHHH---HCCCcEEEecCCCHHHHhhhH
Confidence 467889999999886432 3455556665552 123566665555566665443
No 228
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=95.86 E-value=0.0025 Score=56.94 Aligned_cols=123 Identities=22% Similarity=0.210 Sum_probs=54.4
Q ss_pred eEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHH
Q 013173 186 MACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQ 265 (448)
Q Consensus 186 lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~ 265 (448)
++.|+-|-|||.+.-+.+-..+... ...++|.+|+.+-+..+++.+.+-....+++....... ..
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~------------~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~~---~~ 65 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKG------------KIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKRI---GQ 65 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-----------------EEEE-SS--S-HHHHHCC----------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhc------------CceEEEecCCHHHHHHHHHHHHhhcccccccccccccc---cc
Confidence 5789999999998665443322111 14599999999999998887766444333332000000 00
Q ss_pred HHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccC
Q 013173 266 QLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATF 342 (448)
Q Consensus 266 ~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~ 342 (448)
..........|-+..|+.+... ....++||||||=.+-- +.+..++... . .++||.|.
T Consensus 66 ~~~~~~~~~~i~f~~Pd~l~~~-------~~~~DlliVDEAAaIp~----p~L~~ll~~~-------~-~vv~stTi 123 (177)
T PF05127_consen 66 IIKLRFNKQRIEFVAPDELLAE-------KPQADLLIVDEAAAIPL----PLLKQLLRRF-------P-RVVFSTTI 123 (177)
T ss_dssp -------CCC--B--HHHHCCT-----------SCEEECTGGGS-H----HHHHHHHCCS-------S-EEEEEEEB
T ss_pred ccccccccceEEEECCHHHHhC-------cCCCCEEEEechhcCCH----HHHHHHHhhC-------C-EEEEEeec
Confidence 0001112356777777766432 12347899999986633 5566665333 2 46778886
No 229
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=95.82 E-value=0.034 Score=59.07 Aligned_cols=50 Identities=16% Similarity=0.212 Sum_probs=31.6
Q ss_pred CCCeeEEEEcCCcccccCC-CHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHH
Q 013173 295 LQMIRYLALDEADRMLDMG-FEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQ 347 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~g-f~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~ 347 (448)
+.++++|||||+|.+.... ....+..+++.+. ....++|+.|-..|.++.
T Consensus 375 y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~---e~gk~IIITSd~~P~eL~ 425 (617)
T PRK14086 375 YREMDILLVDDIQFLEDKESTQEEFFHTFNTLH---NANKQIVLSSDRPPKQLV 425 (617)
T ss_pred hhcCCEEEEehhccccCCHHHHHHHHHHHHHHH---hcCCCEEEecCCChHhhh
Confidence 4457889999999885432 3455666666663 224567765555565554
No 230
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=95.82 E-value=0.043 Score=59.23 Aligned_cols=147 Identities=22% Similarity=0.241 Sum_probs=87.9
Q ss_pred HHHCCCCCCCHHHHhHHhhHhCC--CCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHH
Q 013173 160 IRRCKYVKPTPVQRHAIPISIGG--RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSS 237 (448)
Q Consensus 160 l~~~~~~~pt~~Q~~~i~~i~~g--~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~ 237 (448)
+.....+.+..-|.+.+..++.. +-+++.|.-|=|||.+.-|.+.. +.+.. . ...++|.+|+.+-++
T Consensus 207 l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~-~~~~~---------~-~~~iiVTAP~~~nv~ 275 (758)
T COG1444 207 LYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAA-AARLA---------G-SVRIIVTAPTPANVQ 275 (758)
T ss_pred HhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHH-HHHhc---------C-CceEEEeCCCHHHHH
Confidence 44444445555555566666543 35899999999999998776632 22211 0 245999999999999
Q ss_pred HHHHHHHHhcccCCcEEEEEECCCChHHHHHHH-hcCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcccccCCCHH
Q 013173 238 QIHVEAKKFSYQTGVKVVVAYGGAPINQQLREL-ERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEP 316 (448)
Q Consensus 238 qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l-~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~ 316 (448)
.+++.+.+-....|++-.+.....- ..... .+...|=+-+|.... .. -++||||||=.+-- +
T Consensus 276 ~Lf~fa~~~l~~lg~~~~v~~d~~g---~~~~~~~~~~~i~y~~P~~a~---------~~-~DllvVDEAAaIpl----p 338 (758)
T COG1444 276 TLFEFAGKGLEFLGYKRKVAPDALG---EIREVSGDGFRIEYVPPDDAQ---------EE-ADLLVVDEAAAIPL----P 338 (758)
T ss_pred HHHHHHHHhHHHhCCcccccccccc---ceeeecCCceeEEeeCcchhc---------cc-CCEEEEehhhcCCh----H
Confidence 9888877654444443222221100 00000 112234455554432 11 57899999986633 6
Q ss_pred HHHHHHHHcCCCCCCCcEEEEEeccC
Q 013173 317 QIRKIVQQMDMPPPGMRQTMLFSATF 342 (448)
Q Consensus 317 ~i~~i~~~l~~~~~~~~q~i~~SAT~ 342 (448)
.+.+++... +.++||.|+
T Consensus 339 lL~~l~~~~--------~rv~~sTTI 356 (758)
T COG1444 339 LLHKLLRRF--------PRVLFSTTI 356 (758)
T ss_pred HHHHHHhhc--------CceEEEeee
Confidence 677777665 358899996
No 231
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=95.74 E-value=0.027 Score=62.00 Aligned_cols=76 Identities=18% Similarity=0.145 Sum_probs=60.5
Q ss_pred ccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCc------hHHH
Q 013173 274 VDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFP------KEIQ 347 (448)
Q Consensus 274 ~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~------~~v~ 347 (448)
..|+++||..|..-|..+.++++.|..|||||||++....-+..|.+++..- .+.--+.+|||... ..+.
T Consensus 8 ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~----n~~gfIkafSdsP~~~~~g~~~l~ 83 (814)
T TIGR00596 8 GGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQK----NKTGFIKAFSDNPEAFTMGFSPLE 83 (814)
T ss_pred CCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHh----CCCcceEEecCCCcccccchHHHH
Confidence 4799999999998888899999999999999999998876666677777665 33344899999974 3466
Q ss_pred HHHHhh
Q 013173 348 RLASDF 353 (448)
Q Consensus 348 ~l~~~~ 353 (448)
.+++.+
T Consensus 84 ~vmk~L 89 (814)
T TIGR00596 84 TKMRNL 89 (814)
T ss_pred HHHHHh
Confidence 666655
No 232
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.70 E-value=0.045 Score=49.13 Aligned_cols=49 Identities=16% Similarity=0.198 Sum_probs=32.3
Q ss_pred eeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhc
Q 013173 185 LMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFS 247 (448)
Q Consensus 185 ~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~ 247 (448)
+++.+++|+|||...+-.+...+. . +..+++++ +.+...++.+.+..+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~-~------------g~~v~~~s-~e~~~~~~~~~~~~~g 50 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA-R------------GEPGLYVT-LEESPEELIENAESLG 50 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH-C------------CCcEEEEE-CCCCHHHHHHHHHHcC
Confidence 689999999999965544444332 1 12366664 4566777777777763
No 233
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=95.68 E-value=0.1 Score=55.88 Aligned_cols=40 Identities=10% Similarity=0.257 Sum_probs=25.9
Q ss_pred CCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEe
Q 013173 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFS 339 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~S 339 (448)
+...+++||||+|.|.. .....+++.+..+ +....+|+.+
T Consensus 130 ~a~~KVvIIDEad~Ls~----~a~naLLKtLEeP-p~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLST----AAFNALLKTLEEP-PPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCH----HHHHHHHHHHHhC-CCCeEEEEEe
Confidence 45678999999998865 3455566666554 3445455443
No 234
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=95.66 E-value=0.048 Score=56.45 Aligned_cols=49 Identities=12% Similarity=0.064 Sum_probs=30.0
Q ss_pred CCCeeEEEEcCCcccccC-CCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHH
Q 013173 295 LQMIRYLALDEADRMLDM-GFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEI 346 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~-gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v 346 (448)
+.++++|||||+|.+... ...+.+..+++.+. ....|+|+.|-..|.++
T Consensus 204 ~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~---~~~k~iIltsd~~P~~l 253 (450)
T PRK14087 204 ICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFI---ENDKQLFFSSDKSPELL 253 (450)
T ss_pred hccCCEEEEeccccccCCHHHHHHHHHHHHHHH---HcCCcEEEECCCCHHHH
Confidence 356778999999987532 23455666666663 22346666555555554
No 235
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=95.66 E-value=0.026 Score=58.97 Aligned_cols=126 Identities=16% Similarity=0.105 Sum_probs=73.7
Q ss_pred HHHHhHHhhHhC-----C----CCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHH
Q 013173 170 PVQRHAIPISIG-----G----RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIH 240 (448)
Q Consensus 170 ~~Q~~~i~~i~~-----g----~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~ 240 (448)
|+|+..+-.++. | +.+++.-+=+.|||......++..++-.+ ..++.+++++++++-|..++
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g---------~~~~~i~~~A~~~~QA~~~f 71 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDG---------EPGAEIYCAANTRDQAKIVF 71 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCC---------ccCceEEEEeCCHHHHHHHH
Confidence 678877776652 1 35888889999999866555444443221 23466999999999999999
Q ss_pred HHHHHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhc--ccccCCCeeEEEEcCCccccc
Q 013173 241 VEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLER--ARVSLQMIRYLALDEADRMLD 311 (448)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~--~~~~l~~v~~lVlDEah~ll~ 311 (448)
+.++++.......... .. ....... .-.|.....+.++..+.. ...+-.+..++|+||+|.+-+
T Consensus 72 ~~~~~~i~~~~~l~~~-~~-----~~~~~~~-~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~ 137 (477)
T PF03354_consen 72 DEAKKMIEASPELRKR-KK-----PKIIKSN-KKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKD 137 (477)
T ss_pred HHHHHHHHhChhhccc-hh-----hhhhhhh-ceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCC
Confidence 9999876432111000 00 0000000 112333222333222221 233445678999999998866
No 236
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.65 E-value=0.053 Score=55.41 Aligned_cols=49 Identities=16% Similarity=0.217 Sum_probs=26.9
Q ss_pred CeeEEEEcCCcccccCC-CHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHH
Q 013173 297 MIRYLALDEADRMLDMG-FEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQR 348 (448)
Q Consensus 297 ~v~~lVlDEah~ll~~g-f~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~ 348 (448)
++++|||||+|.+.... ....+..++..+. ....++++.|...|.++..
T Consensus 199 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~---~~~~~iiits~~~p~~l~~ 248 (405)
T TIGR00362 199 SVDLLLIDDIQFLAGKERTQEEFFHTFNALH---ENGKQIVLTSDRPPKELPG 248 (405)
T ss_pred hCCEEEEehhhhhcCCHHHHHHHHHHHHHHH---HCCCCEEEecCCCHHHHhh
Confidence 45689999999875432 2334555555542 2234555444434555443
No 237
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.64 E-value=0.036 Score=53.54 Aligned_cols=100 Identities=18% Similarity=0.248 Sum_probs=56.6
Q ss_pred CCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH-hcccCCcEEEEEECCC
Q 013173 183 RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK-FSYQTGVKVVVAYGGA 261 (448)
Q Consensus 183 ~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~-~~~~~~~~~~~~~gg~ 261 (448)
.+++++++|+.|||.. +.++.+.-..... ......|.++|-+|...-....+..+-. ++.. +...
T Consensus 62 p~lLivG~snnGKT~I-----i~rF~~~hp~~~d-~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP--------~~~~ 127 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMI-----IERFRRLHPPQSD-EDAERIPVVYVQMPPEPDERRFYSAILEALGAP--------YRPR 127 (302)
T ss_pred CceEEecCCCCcHHHH-----HHHHHHHCCCCCC-CCCccccEEEEecCCCCChHHHHHHHHHHhCcc--------cCCC
Confidence 5799999999999993 3444432222111 2223447788888888777776666544 3222 1111
Q ss_pred ChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcccccCCC
Q 013173 262 PINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGF 314 (448)
Q Consensus 262 ~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~gf 314 (448)
........ ..+.++. --.+++|||||+|.++.-..
T Consensus 128 ~~~~~~~~-------------~~~~llr-----~~~vrmLIIDE~H~lLaGs~ 162 (302)
T PF05621_consen 128 DRVAKLEQ-------------QVLRLLR-----RLGVRMLIIDEFHNLLAGSY 162 (302)
T ss_pred CCHHHHHH-------------HHHHHHH-----HcCCcEEEeechHHHhcccH
Confidence 11111110 1122333 34578999999999987553
No 238
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.64 E-value=0.015 Score=52.27 Aligned_cols=30 Identities=27% Similarity=0.406 Sum_probs=19.8
Q ss_pred HhCCCCeeEEccCCCCccchhhhhHHHHHhh
Q 013173 179 SIGGRDLMACAQTGSGKTAAFCFPIISGIMR 209 (448)
Q Consensus 179 i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~ 209 (448)
+.+++++++.+++|+|||.... .+...++.
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~-ai~~~~~~ 73 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAV-AIANEAIR 73 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHH-HHHHHHHH
T ss_pred cccCeEEEEEhhHhHHHHHHHH-HHHHHhcc
Confidence 3467899999999999998744 34444444
No 239
>PRK12377 putative replication protein; Provisional
Probab=95.59 E-value=0.12 Score=49.14 Aligned_cols=26 Identities=15% Similarity=0.301 Sum_probs=18.3
Q ss_pred CCCeeEEccCCCCccchhhhhHHHHHh
Q 013173 182 GRDLMACAQTGSGKTAAFCFPIISGIM 208 (448)
Q Consensus 182 g~d~lv~a~TGsGKT~~~~lpil~~l~ 208 (448)
..++++.+++|+|||-... .+.+.+.
T Consensus 101 ~~~l~l~G~~GtGKThLa~-AIa~~l~ 126 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAA-AIGNRLL 126 (248)
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHH
Confidence 3679999999999997532 3334443
No 240
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=95.54 E-value=0.042 Score=55.95 Aligned_cols=138 Identities=14% Similarity=0.228 Sum_probs=77.8
Q ss_pred CeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHH-HHHHHHHHHHHhcccCCcEEEEEECCCC
Q 013173 184 DLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRE-LSSQIHVEAKKFSYQTGVKVVVAYGGAP 262 (448)
Q Consensus 184 d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptre-L~~qi~~~~~~~~~~~~~~~~~~~gg~~ 262 (448)
-.++.+..|||||.+..+-++..++... ...++||+-++.. |-..++..+.......++....-....+
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~~----------~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~ 72 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAINK----------KQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSS 72 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhcC----------CCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCc
Confidence 3678999999999999888887776641 1245899989888 5566677776554333332111111110
Q ss_pred hHHHHHHHhcCccEEEeCh-HHHHHHHhcccccCCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEecc
Q 013173 263 INQQLRELERGVDILVATP-GRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSAT 341 (448)
Q Consensus 263 ~~~~~~~l~~~~~Ilv~Tp-~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT 341 (448)
. .+.....+..|++..- +...++ .....+.++.+|||..+.. +.+..++..+..+ ...+.+++|.|
T Consensus 73 ~--~i~~~~~g~~i~f~g~~d~~~~i-----k~~~~~~~~~idEa~~~~~----~~~~~l~~rlr~~--~~~~~i~~t~N 139 (396)
T TIGR01547 73 M--EIKILNTGKKFIFKGLNDKPNKL-----KSGAGIAIIWFEEASQLTF----EDIKELIPRLRET--GGKKFIIFSSN 139 (396)
T ss_pred c--EEEecCCCeEEEeecccCChhHh-----hCcceeeeehhhhhhhcCH----HHHHHHHHHhhcc--CCccEEEEEcC
Confidence 0 0000011334555433 111111 1234478999999998743 4566666666432 22224788888
Q ss_pred Cch
Q 013173 342 FPK 344 (448)
Q Consensus 342 ~~~ 344 (448)
.+.
T Consensus 140 P~~ 142 (396)
T TIGR01547 140 PES 142 (396)
T ss_pred cCC
Confidence 754
No 241
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.52 E-value=0.11 Score=55.38 Aligned_cols=45 Identities=18% Similarity=0.281 Sum_probs=27.3
Q ss_pred CCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchH
Q 013173 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKE 345 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~ 345 (448)
....+++||||+|+|... ....+++.+..+ +....+|+.+ |-+..
T Consensus 116 ~~~~KVvIIDEah~Lt~~----A~NALLK~LEEp-p~~~~fIL~t-te~~k 160 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTA----GFNALLKIVEEP-PEHLIFIFAT-TEPEK 160 (584)
T ss_pred cCCceEEEEECCCcCCHH----HHHHHHHHHhcC-CCCeEEEEEe-CChHh
Confidence 356789999999998663 344555555554 3344344433 54443
No 242
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.52 E-value=0.085 Score=54.72 Aligned_cols=49 Identities=16% Similarity=0.227 Sum_probs=27.8
Q ss_pred CCeeEEEEcCCcccccCC-CHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHH
Q 013173 296 QMIRYLALDEADRMLDMG-FEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQ 347 (448)
Q Consensus 296 ~~v~~lVlDEah~ll~~g-f~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~ 347 (448)
.++++|||||+|.+.... ....+..++..+. ....++++.|.+.|.++.
T Consensus 210 ~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~---~~~~~iiits~~~p~~l~ 259 (450)
T PRK00149 210 RSVDVLLIDDIQFLAGKERTQEEFFHTFNALH---EAGKQIVLTSDRPPKELP 259 (450)
T ss_pred hcCCEEEEehhhhhcCCHHHHHHHHHHHHHHH---HCCCcEEEECCCCHHHHH
Confidence 356789999999875432 2344555555552 223455554444455544
No 243
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.49 E-value=0.056 Score=45.24 Aligned_cols=15 Identities=27% Similarity=0.468 Sum_probs=13.1
Q ss_pred eeEEccCCCCccchh
Q 013173 185 LMACAQTGSGKTAAF 199 (448)
Q Consensus 185 ~lv~a~TGsGKT~~~ 199 (448)
+++.+|.|+|||...
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 589999999999954
No 244
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.48 E-value=0.053 Score=56.25 Aligned_cols=19 Identities=32% Similarity=0.389 Sum_probs=15.8
Q ss_pred CCCeeEEccCCCCccchhh
Q 013173 182 GRDLMACAQTGSGKTAAFC 200 (448)
Q Consensus 182 g~d~lv~a~TGsGKT~~~~ 200 (448)
++-+++++|||+|||+...
T Consensus 256 g~Vi~LvGpnGvGKTTTia 274 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTA 274 (484)
T ss_pred CcEEEEECCCCccHHHHHH
Confidence 4568899999999999644
No 245
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.47 E-value=0.063 Score=57.24 Aligned_cols=47 Identities=17% Similarity=0.361 Sum_probs=28.7
Q ss_pred CCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHH
Q 013173 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQ 347 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~ 347 (448)
....++|||||||.|.. .....+++.+..++ .. -+++|.+|-+..+.
T Consensus 117 ~g~~kVIIIDEad~Lt~----~a~naLLk~LEEP~-~~-~ifILaTt~~~kll 163 (624)
T PRK14959 117 EGRYKVFIIDEAHMLTR----EAFNALLKTLEEPP-AR-VTFVLATTEPHKFP 163 (624)
T ss_pred cCCceEEEEEChHhCCH----HHHHHHHHHhhccC-CC-EEEEEecCChhhhh
Confidence 34568999999998854 44555666665432 22 34555666544443
No 246
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.46 E-value=0.75 Score=48.19 Aligned_cols=20 Identities=30% Similarity=0.469 Sum_probs=16.6
Q ss_pred CCCCeeEEccCCCCccchhh
Q 013173 181 GGRDLMACAQTGSGKTAAFC 200 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~~ 200 (448)
.++.++++++||+|||....
T Consensus 349 ~G~vIaLVGPtGvGKTTtaa 368 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIA 368 (559)
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46778899999999998653
No 247
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=95.46 E-value=0.14 Score=55.03 Aligned_cols=43 Identities=14% Similarity=0.330 Sum_probs=25.5
Q ss_pred CCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCch
Q 013173 296 QMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPK 344 (448)
Q Consensus 296 ~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~ 344 (448)
...+++||||||+|... ....+++.+..+ +....+| |..|-+.
T Consensus 118 g~~KV~IIDEah~Ls~~----a~NALLKtLEEP-p~~v~FI-L~Tt~~~ 160 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRH----SFNALLKTLEEP-PEHVKFL-LATTDPQ 160 (647)
T ss_pred CCCEEEEEechHhCCHH----HHHHHHHHHHcC-CCCeEEE-EecCCcc
Confidence 45788999999988663 344455555544 3334333 3445333
No 248
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=95.46 E-value=0.039 Score=53.05 Aligned_cols=55 Identities=15% Similarity=0.271 Sum_probs=32.6
Q ss_pred cCCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccC---chHHHHHHHhh
Q 013173 294 SLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATF---PKEIQRLASDF 353 (448)
Q Consensus 294 ~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~---~~~v~~l~~~~ 353 (448)
.....+.+||||||.|....+ ..+++.++.. +....+++.+--+ +..+..-+.+|
T Consensus 126 ~~~~fKiiIlDEcdsmtsdaq-~aLrr~mE~~----s~~trFiLIcnylsrii~pi~SRC~Kf 183 (346)
T KOG0989|consen 126 PCPPFKIIILDECDSMTSDAQ-AALRRTMEDF----SRTTRFILICNYLSRIIRPLVSRCQKF 183 (346)
T ss_pred CCCcceEEEEechhhhhHHHH-HHHHHHHhcc----ccceEEEEEcCChhhCChHHHhhHHHh
Confidence 356679999999999866332 4566666654 4444555555443 44444444444
No 249
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=95.42 E-value=0.12 Score=51.13 Aligned_cols=34 Identities=26% Similarity=0.221 Sum_probs=26.0
Q ss_pred CCHHHHhHHhhHhC-CC---CeeEEccCCCCccchhhh
Q 013173 168 PTPVQRHAIPISIG-GR---DLMACAQTGSGKTAAFCF 201 (448)
Q Consensus 168 pt~~Q~~~i~~i~~-g~---d~lv~a~TGsGKT~~~~l 201 (448)
..|+|...+..+.. ++ -+++++|.|+|||.....
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~ 41 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAER 41 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHH
Confidence 46888888877764 32 388999999999986543
No 250
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=95.40 E-value=0.094 Score=55.75 Aligned_cols=137 Identities=18% Similarity=0.108 Sum_probs=85.8
Q ss_pred hCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccC--CcEEEEE
Q 013173 180 IGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQT--GVKVVVA 257 (448)
Q Consensus 180 ~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~--~~~~~~~ 257 (448)
.+.+-.++..|==.|||+... +++..++... .+-++++++|.+.-+..+++++..+...+ ...+..+
T Consensus 252 fkqk~tVflVPRR~GKTwivv-~iI~~ll~s~----------~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~v 320 (738)
T PHA03368 252 FRQRATVFLVPRRHGKTWFLV-PLIALALATF----------RGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHV 320 (738)
T ss_pred hhccceEEEecccCCchhhHH-HHHHHHHHhC----------CCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeee
Confidence 355678999999999999755 6666555321 23469999999999999999999876432 1112122
Q ss_pred ECCCChHHHHHHHhcC--ccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEE
Q 013173 258 YGGAPINQQLRELERG--VDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQT 335 (448)
Q Consensus 258 ~gg~~~~~~~~~l~~~--~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~ 335 (448)
. |..+ .-.+.++ ..|.++|. -..+...-.++++||||||+.+-+ +.+..++-.+. ..+.++
T Consensus 321 k-Ge~I---~i~f~nG~kstI~FaSa------rntNsiRGqtfDLLIVDEAqFIk~----~al~~ilp~l~---~~n~k~ 383 (738)
T PHA03368 321 K-GETI---SFSFPDGSRSTIVFASS------HNTNGIRGQDFNLLFVDEANFIRP----DAVQTIMGFLN---QTNCKI 383 (738)
T ss_pred c-CcEE---EEEecCCCccEEEEEec------cCCCCccCCcccEEEEechhhCCH----HHHHHHHHHHh---ccCccE
Confidence 2 2211 0011112 24555432 112234456789999999998866 55666665553 236778
Q ss_pred EEEeccCch
Q 013173 336 MLFSATFPK 344 (448)
Q Consensus 336 i~~SAT~~~ 344 (448)
|++|.|.+.
T Consensus 384 I~ISS~Ns~ 392 (738)
T PHA03368 384 IFVSSTNTG 392 (738)
T ss_pred EEEecCCCC
Confidence 999988543
No 251
>PHA02533 17 large terminase protein; Provisional
Probab=95.40 E-value=0.072 Score=56.24 Aligned_cols=150 Identities=14% Similarity=0.047 Sum_probs=85.4
Q ss_pred CCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013173 167 KPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF 246 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~ 246 (448)
.|.|+|+..+..+..++-.++..+=..|||.+....++...+... +..+++++|+++-|..+++.++.+
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~~-----------~~~v~i~A~~~~QA~~vF~~ik~~ 127 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFNK-----------DKNVGILAHKASMAAEVLDRTKQA 127 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhCC-----------CCEEEEEeCCHHHHHHHHHHHHHH
Confidence 578999999887765666677788889999987755554443221 236999999999999999888865
Q ss_pred cccCC--cEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcccccCCCHHHHHHHHHH
Q 013173 247 SYQTG--VKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQ 324 (448)
Q Consensus 247 ~~~~~--~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~ 324 (448)
..... .+..+.... ...-.+.++..|.+.|... ....-.+..++|+||+|.+-+ +.+.+..+...
T Consensus 128 ie~~P~l~~~~i~~~~----~~~I~l~NGS~I~~lss~~-------~t~rG~~~~~liiDE~a~~~~--~~e~~~ai~p~ 194 (534)
T PHA02533 128 IELLPDFLQPGIVEWN----KGSIELENGSKIGAYASSP-------DAVRGNSFAMIYIDECAFIPN--FIDFWLAIQPV 194 (534)
T ss_pred HHhCHHHhhcceeecC----ccEEEeCCCCEEEEEeCCC-------CccCCCCCceEEEeccccCCC--HHHHHHHHHHH
Confidence 43211 111110000 0011123454554444221 112234567899999997644 33444444444
Q ss_pred cCCCCCCCcEEEEEeccC
Q 013173 325 MDMPPPGMRQTMLFSATF 342 (448)
Q Consensus 325 l~~~~~~~~q~i~~SAT~ 342 (448)
+... ..-+++++|...
T Consensus 195 lasg--~~~r~iiiSTp~ 210 (534)
T PHA02533 195 ISSG--RSSKIIITSTPN 210 (534)
T ss_pred HHcC--CCceEEEEECCC
Confidence 4221 112455555553
No 252
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.39 E-value=0.17 Score=54.02 Aligned_cols=40 Identities=13% Similarity=0.305 Sum_probs=25.6
Q ss_pred CCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEe
Q 013173 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFS 339 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~S 339 (448)
....+++||||+|+|... ....+++.|+.+ +....+|+.|
T Consensus 122 ~gr~KViIIDEah~Ls~~----AaNALLKTLEEP-P~~v~FILaT 161 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNH----AFNAMLKTLEEP-PEHVKFILAT 161 (700)
T ss_pred cCCceEEEEEChHhcCHH----HHHHHHHhhccC-CCCceEEEEe
Confidence 346789999999998663 344556666554 4455455444
No 253
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=95.38 E-value=0.049 Score=58.60 Aligned_cols=18 Identities=22% Similarity=0.285 Sum_probs=15.4
Q ss_pred CeeEEccCCCCccchhhh
Q 013173 184 DLMACAQTGSGKTAAFCF 201 (448)
Q Consensus 184 d~lv~a~TGsGKT~~~~l 201 (448)
.+|++++.|+|||.+..+
T Consensus 40 a~Lf~GP~GvGKTTlAri 57 (709)
T PRK08691 40 AYLLTGTRGVGKTTIARI 57 (709)
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 479999999999987654
No 254
>PF13173 AAA_14: AAA domain
Probab=95.37 E-value=0.16 Score=42.87 Aligned_cols=38 Identities=18% Similarity=0.307 Sum_probs=23.8
Q ss_pred CeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEecc
Q 013173 297 MIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSAT 341 (448)
Q Consensus 297 ~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT 341 (448)
.-.+|+|||+|.+-+ |...+..+...- .+.++++.+..
T Consensus 61 ~~~~i~iDEiq~~~~--~~~~lk~l~d~~-----~~~~ii~tgS~ 98 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPD--WEDALKFLVDNG-----PNIKIILTGSS 98 (128)
T ss_pred CCcEEEEehhhhhcc--HHHHHHHHHHhc-----cCceEEEEccc
Confidence 456899999998843 556666666543 23555544443
No 255
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.37 E-value=0.076 Score=49.55 Aligned_cols=44 Identities=11% Similarity=0.184 Sum_probs=25.8
Q ss_pred CeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCch
Q 013173 297 MIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPK 344 (448)
Q Consensus 297 ~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~ 344 (448)
..++|||||+|.+-.. -...+..++..+.. ....+++++++.++
T Consensus 90 ~~~~liiDdi~~l~~~-~~~~L~~~~~~~~~---~~~~~vl~~~~~~~ 133 (227)
T PRK08903 90 EAELYAVDDVERLDDA-QQIALFNLFNRVRA---HGQGALLVAGPAAP 133 (227)
T ss_pred cCCEEEEeChhhcCch-HHHHHHHHHHHHHH---cCCcEEEEeCCCCH
Confidence 4567999999987432 23445555555421 12235777777654
No 256
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.35 E-value=0.063 Score=51.16 Aligned_cols=51 Identities=18% Similarity=0.337 Sum_probs=34.8
Q ss_pred CCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013173 181 GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK 245 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~ 245 (448)
.+.++++.+++|+|||.... .|-+.+.+. ..-++++++.+|+.++...+..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~-Ai~~~l~~~-------------g~sv~f~~~~el~~~Lk~~~~~ 154 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAI-AIGNELLKA-------------GISVLFITAPDLLSKLKAAFDE 154 (254)
T ss_pred cCCcEEEECCCCCcHHHHHH-HHHHHHHHc-------------CCeEEEEEHHHHHHHHHHHHhc
Confidence 67899999999999998643 333444422 2256677888888776654443
No 257
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=95.34 E-value=0.089 Score=54.35 Aligned_cols=52 Identities=10% Similarity=0.268 Sum_probs=30.5
Q ss_pred CeeEEEEcCCcccccCC-CHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHH
Q 013173 297 MIRYLALDEADRMLDMG-FEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLAS 351 (448)
Q Consensus 297 ~v~~lVlDEah~ll~~g-f~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~ 351 (448)
.+++|||||+|.+++.. ....+..++..+. ....|+|+.|-..|.++..+..
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~---~~~k~iIitsd~~p~~l~~l~~ 246 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELH---DSGKQIVICSDREPQKLSEFQD 246 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHH---HcCCeEEEECCCCHHHHHHHHH
Confidence 46789999999886532 2344555555552 2234565555555666555433
No 258
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=95.29 E-value=0.11 Score=51.42 Aligned_cols=17 Identities=47% Similarity=0.571 Sum_probs=14.9
Q ss_pred CeeEEccCCCCccchhh
Q 013173 184 DLMACAQTGSGKTAAFC 200 (448)
Q Consensus 184 d~lv~a~TGsGKT~~~~ 200 (448)
++++.+|+|+|||....
T Consensus 38 ~lll~Gp~GtGKT~la~ 54 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVR 54 (337)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 79999999999998643
No 259
>CHL00181 cbbX CbbX; Provisional
Probab=95.25 E-value=0.13 Score=50.05 Aligned_cols=20 Identities=25% Similarity=0.305 Sum_probs=16.8
Q ss_pred CCCeeEEccCCCCccchhhh
Q 013173 182 GRDLMACAQTGSGKTAAFCF 201 (448)
Q Consensus 182 g~d~lv~a~TGsGKT~~~~l 201 (448)
+.++++.+++|+|||.+...
T Consensus 59 ~~~ill~G~pGtGKT~lAr~ 78 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALK 78 (287)
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 56799999999999997644
No 260
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.22 E-value=0.12 Score=54.29 Aligned_cols=39 Identities=13% Similarity=0.310 Sum_probs=24.4
Q ss_pred CCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEe
Q 013173 296 QMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFS 339 (448)
Q Consensus 296 ~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~S 339 (448)
...+++||||||+|... ....+++.+..+ +....+|+.+
T Consensus 118 ~~~kV~iIDE~~~ls~~----a~naLLk~LEep-p~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGH----SFNALLKTLEEP-PSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHH----HHHHHHHHHhcc-CCCeEEEEEE
Confidence 45689999999988663 344455555554 4445455433
No 261
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.20 E-value=0.11 Score=53.66 Aligned_cols=17 Identities=24% Similarity=0.270 Sum_probs=14.9
Q ss_pred eeEEccCCCCccchhhh
Q 013173 185 LMACAQTGSGKTAAFCF 201 (448)
Q Consensus 185 ~lv~a~TGsGKT~~~~l 201 (448)
+++++|.|+|||.+..+
T Consensus 43 ~Lf~GP~GtGKTTlAri 59 (484)
T PRK14956 43 YIFFGPRGVGKTTIARI 59 (484)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 79999999999997654
No 262
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=95.20 E-value=0.16 Score=54.00 Aligned_cols=45 Identities=13% Similarity=0.319 Sum_probs=28.1
Q ss_pred CCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchH
Q 013173 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKE 345 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~ 345 (448)
...-+++||||+|+|.. .....+++.+..++ ... +++|.+|-+..
T Consensus 117 ~~~~kViIIDE~~~Lt~----~a~naLLKtLEepp-~~~-ifIlatt~~~k 161 (559)
T PRK05563 117 EAKYKVYIIDEVHMLST----GAFNALLKTLEEPP-AHV-IFILATTEPHK 161 (559)
T ss_pred cCCeEEEEEECcccCCH----HHHHHHHHHhcCCC-CCe-EEEEEeCChhh
Confidence 45678999999998865 34556666666543 333 44444554443
No 263
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=95.17 E-value=0.12 Score=53.00 Aligned_cols=74 Identities=16% Similarity=0.026 Sum_probs=42.7
Q ss_pred CCCCCCHHHHhHHhhH----hCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHH
Q 013173 164 KYVKPTPVQRHAIPIS----IGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQI 239 (448)
Q Consensus 164 ~~~~pt~~Q~~~i~~i----~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi 239 (448)
.|..-.|-|..-+..+ -.+-+.++..|+|+|||.+.+--++...++.+. ...+.|+-+-|..-+...
T Consensus 13 PY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~---------~~~KliYCSRTvpEieK~ 83 (755)
T KOG1131|consen 13 PYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPD---------EHRKLIYCSRTVPEIEKA 83 (755)
T ss_pred CCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCc---------ccceEEEecCcchHHHHH
Confidence 4555666676555432 346689999999999999866555554444321 112344444454444444
Q ss_pred HHHHHHh
Q 013173 240 HVEAKKF 246 (448)
Q Consensus 240 ~~~~~~~ 246 (448)
..+++.+
T Consensus 84 l~El~~l 90 (755)
T KOG1131|consen 84 LEELKRL 90 (755)
T ss_pred HHHHHHH
Confidence 4454443
No 264
>PTZ00146 fibrillarin; Provisional
Probab=95.16 E-value=1 Score=43.68 Aligned_cols=18 Identities=17% Similarity=0.130 Sum_probs=11.6
Q ss_pred CeeEEccCCCCccchhhh
Q 013173 184 DLMACAQTGSGKTAAFCF 201 (448)
Q Consensus 184 d~lv~a~TGsGKT~~~~l 201 (448)
+.++-.-.|+|=++.++.
T Consensus 134 ~~VLDLGaG~G~~t~~lA 151 (293)
T PTZ00146 134 SKVLYLGAASGTTVSHVS 151 (293)
T ss_pred CEEEEeCCcCCHHHHHHH
Confidence 456677777776665444
No 265
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.14 E-value=0.7 Score=44.39 Aligned_cols=161 Identities=14% Similarity=0.198 Sum_probs=82.5
Q ss_pred CCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcH--HHHHHHHHHHHHhcccCCcEEEEEE
Q 013173 181 GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTR--ELSSQIHVEAKKFSYQTGVKVVVAY 258 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr--eL~~qi~~~~~~~~~~~~~~~~~~~ 258 (448)
.+..+++++++|+|||..+..-+.. +.... ....+|-+.+. ..+.|....+.. .++.+..
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~-l~~~~-----------~~v~~i~~D~~ri~~~~ql~~~~~~----~~~~~~~-- 135 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQ-FHGKK-----------KTVGFITTDHSRIGTVQQLQDYVKT----IGFEVIA-- 135 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHH-HHHcC-----------CeEEEEecCCCCHHHHHHHHHHhhh----cCceEEe--
Confidence 3467899999999999976543322 21111 11234444332 344444332222 2222221
Q ss_pred CCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEE
Q 013173 259 GGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLF 338 (448)
Q Consensus 259 gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~ 338 (448)
..+|..|.+.+..-. .....++++||-+=+.... ...+.++...+... .+..-.+.+
T Consensus 136 -------------------~~~~~~l~~~l~~l~-~~~~~D~ViIDt~Gr~~~~--~~~l~el~~~~~~~-~~~~~~LVl 192 (270)
T PRK06731 136 -------------------VRDEAAMTRALTYFK-EEARVDYILIDTAGKNYRA--SETVEEMIETMGQV-EPDYICLTL 192 (270)
T ss_pred -------------------cCCHHHHHHHHHHHH-hcCCCCEEEEECCCCCcCC--HHHHHHHHHHHhhh-CCCeEEEEE
Confidence 134555555443211 1245788999998776321 23344444433222 223346779
Q ss_pred eccC-chHHHHHHHhhhcCcEEEEecccccccCceeEEEEEecccchHHHHHHHHHHH
Q 013173 339 SATF-PKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQ 395 (448)
Q Consensus 339 SAT~-~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~ 395 (448)
|||. ..++.+.++.|-.- ... .-.+..+++..+.-.++.++...
T Consensus 193 ~a~~~~~d~~~~~~~f~~~-----------~~~--~~I~TKlDet~~~G~~l~~~~~~ 237 (270)
T PRK06731 193 SASMKSKDMIEIITNFKDI-----------HID--GIVFTKFDETASSGELLKIPAVS 237 (270)
T ss_pred cCccCHHHHHHHHHHhCCC-----------CCC--EEEEEeecCCCCccHHHHHHHHH
Confidence 9986 55777877776320 011 11334556666666777776654
No 266
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.13 E-value=0.076 Score=58.57 Aligned_cols=45 Identities=16% Similarity=0.372 Sum_probs=26.8
Q ss_pred CCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHH
Q 013173 296 QMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEI 346 (448)
Q Consensus 296 ~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v 346 (448)
...+++||||||+|.. .....+++.+..+ +....+|+ ..|-+..+
T Consensus 118 gk~KViIIDEAh~LT~----eAqNALLKtLEEP-P~~vrFIL-aTTe~~kL 162 (944)
T PRK14949 118 GRFKVYLIDEVHMLSR----SSFNALLKTLEEP-PEHVKFLL-ATTDPQKL 162 (944)
T ss_pred CCcEEEEEechHhcCH----HHHHHHHHHHhcc-CCCeEEEE-ECCCchhc
Confidence 4568899999999854 3444555555544 34444444 35544443
No 267
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.13 E-value=0.032 Score=53.58 Aligned_cols=27 Identities=26% Similarity=0.204 Sum_probs=20.0
Q ss_pred HhCCCCeeEEccCCCCccchhhhhHHH
Q 013173 179 SIGGRDLMACAQTGSGKTAAFCFPIIS 205 (448)
Q Consensus 179 i~~g~d~lv~a~TGsGKT~~~~lpil~ 205 (448)
+..|.-+++.|++|+|||...+-.+.+
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l~~~~~~~ 53 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFLREYALD 53 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 345678999999999999865444443
No 268
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=95.13 E-value=0.15 Score=50.07 Aligned_cols=40 Identities=25% Similarity=0.319 Sum_probs=25.9
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCCHHHHhHHhhHhCCC--Ce-eEEccCCCCccchh
Q 013173 145 NTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGR--DL-MACAQTGSGKTAAF 199 (448)
Q Consensus 145 ~~f~~l~L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~--d~-lv~a~TGsGKT~~~ 199 (448)
.+|+++-..+.+.+.+... +..++ ++ ++++|+|+|||...
T Consensus 18 ~~~~~~~~~~~~~~~l~~~---------------~~~~~~~~~lll~G~~G~GKT~la 60 (316)
T PHA02544 18 STIDECILPAADKETFKSI---------------VKKGRIPNMLLHSPSPGTGKTTVA 60 (316)
T ss_pred CcHHHhcCcHHHHHHHHHH---------------HhcCCCCeEEEeeCcCCCCHHHHH
Confidence 4577777777766655531 22332 44 45899999999853
No 269
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.12 E-value=0.18 Score=54.03 Aligned_cols=42 Identities=14% Similarity=0.332 Sum_probs=26.7
Q ss_pred CCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccC
Q 013173 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATF 342 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~ 342 (448)
+..-++|||||+|.|.. ..+..+++.+..++ .. .+++|.+|-
T Consensus 118 ~~~~kVvIIDEa~~L~~----~a~naLLk~LEepp-~~-tv~Il~t~~ 159 (585)
T PRK14950 118 LARYKVYIIDEVHMLST----AAFNALLKTLEEPP-PH-AIFILATTE 159 (585)
T ss_pred cCCeEEEEEeChHhCCH----HHHHHHHHHHhcCC-CC-eEEEEEeCC
Confidence 45678999999998865 44556666665543 23 344455443
No 270
>PRK09183 transposase/IS protein; Provisional
Probab=95.11 E-value=0.12 Score=49.49 Aligned_cols=22 Identities=18% Similarity=0.206 Sum_probs=18.5
Q ss_pred HhCCCCeeEEccCCCCccchhh
Q 013173 179 SIGGRDLMACAQTGSGKTAAFC 200 (448)
Q Consensus 179 i~~g~d~lv~a~TGsGKT~~~~ 200 (448)
+..+.++++.+|+|+|||....
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~ 120 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAI 120 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHH
Confidence 4468899999999999998544
No 271
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.05 E-value=0.054 Score=51.98 Aligned_cols=53 Identities=21% Similarity=0.277 Sum_probs=37.9
Q ss_pred CCCccCCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhh
Q 013173 139 NVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMRE 210 (448)
Q Consensus 139 ~~~~~~~~f~~l~L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~ 210 (448)
.+|..+.+|+++++++.+.+.+.. ..-=++|.+|||||||+. +-.+++.+.+.
T Consensus 100 ~Ip~~i~~~e~LglP~i~~~~~~~------------------~~GLILVTGpTGSGKSTT-lAamId~iN~~ 152 (353)
T COG2805 100 LIPSKIPTLEELGLPPIVRELAES------------------PRGLILVTGPTGSGKSTT-LAAMIDYINKH 152 (353)
T ss_pred ccCccCCCHHHcCCCHHHHHHHhC------------------CCceEEEeCCCCCcHHHH-HHHHHHHHhcc
Confidence 466778899999999977763321 112388999999999986 45567766554
No 272
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.05 E-value=0.52 Score=49.47 Aligned_cols=43 Identities=14% Similarity=0.281 Sum_probs=26.1
Q ss_pred CCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCc
Q 013173 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFP 343 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~ 343 (448)
...-+++||||+|+|.. ..+..+++.+..++ ... +++|.+|-.
T Consensus 126 ~~~~KVvIIDEa~~Ls~----~a~naLLk~LEepp-~~~-vfI~aTte~ 168 (507)
T PRK06645 126 QGKHKIFIIDEVHMLSK----GAFNALLKTLEEPP-PHI-IFIFATTEV 168 (507)
T ss_pred cCCcEEEEEEChhhcCH----HHHHHHHHHHhhcC-CCE-EEEEEeCCh
Confidence 45678999999998855 44555566665443 333 444444543
No 273
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.04 E-value=0.13 Score=60.27 Aligned_cols=65 Identities=25% Similarity=0.282 Sum_probs=45.0
Q ss_pred CCCHHHHhHHhhHhCC--CCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHH
Q 013173 167 KPTPVQRHAIPISIGG--RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIH 240 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~~g--~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~ 240 (448)
.+++-|+.++..++.. +-+++++..|+|||...- .++..+.... ...+..++.++||-.-+..+.
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~-~i~~~~~~l~--------e~~g~~V~glAPTgkAa~~L~ 901 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFR-AVMSAVNMLP--------ESERPRVVGLGPTHRAVGEMR 901 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHH-HHHHHHHHHh--------hccCceEEEEechHHHHHHHH
Confidence 6899999999999855 669999999999998632 1222221100 012345888999988776653
No 274
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.01 E-value=0.44 Score=51.16 Aligned_cols=44 Identities=14% Similarity=0.373 Sum_probs=26.9
Q ss_pred CCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchH
Q 013173 296 QMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKE 345 (448)
Q Consensus 296 ~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~ 345 (448)
...+++||||+|+|... ....+++.+..+ +....+| |.+|-+..
T Consensus 123 g~~KV~IIDEvh~Ls~~----a~NaLLKtLEEP-P~~~~fI-L~Ttd~~k 166 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNT----AFNAMLKTLEEP-PEYLKFV-LATTDPQK 166 (618)
T ss_pred CCceEEEEEChhhCCHH----HHHHHHHhcccC-CCCeEEE-EEECCchh
Confidence 46789999999998663 344555666554 3444444 44454433
No 275
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=95.01 E-value=0.43 Score=51.16 Aligned_cols=144 Identities=14% Similarity=0.090 Sum_probs=83.0
Q ss_pred CCHHHHhHHhhH---hCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q 013173 168 PTPVQRHAIPIS---IGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAK 244 (448)
Q Consensus 168 pt~~Q~~~i~~i---~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~ 244 (448)
|+|.=.+-|..+ .+.+-.++.+|=|.|||.+..+.+...+ .. .+.+++|++|...-+.++++.++
T Consensus 170 ~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La-~f-----------~Gi~IlvTAH~~~ts~evF~rv~ 237 (752)
T PHA03333 170 PSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMI-SF-----------LEIDIVVQAQRKTMCLTLYNRVE 237 (752)
T ss_pred CChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHH-Hh-----------cCCeEEEECCChhhHHHHHHHHH
Confidence 455544444443 3556788999999999998665544332 21 12459999999999999999988
Q ss_pred HhcccCC--------cEEEEEECCCChHHHHHHHhcCccEEEeChHHHH----H--HH--hcccccCCCeeEEEEcCCcc
Q 013173 245 KFSYQTG--------VKVVVAYGGAPINQQLRELERGVDILVATPGRLV----D--LL--ERARVSLQMIRYLALDEADR 308 (448)
Q Consensus 245 ~~~~~~~--------~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~----~--~l--~~~~~~l~~v~~lVlDEah~ 308 (448)
++....+ -++..+.||. -.|.+..|.... . +. ..+...-..+++||||||..
T Consensus 238 ~~le~lg~~~~fp~~~~iv~vkgg~------------E~I~f~~p~gak~G~sti~F~Ars~~s~RG~~~DLLIVDEAAf 305 (752)
T PHA03333 238 TVVHAYQHKPWFPEEFKIVTLKGTD------------ENLEYISDPAAKEGKTTAHFLASSPNAARGQNPDLVIVDEAAF 305 (752)
T ss_pred HHHHHhccccccCCCceEEEeeCCe------------eEEEEecCcccccCcceeEEecccCCCcCCCCCCEEEEECccc
Confidence 8765222 1112122221 112222221111 0 00 01222334568999999998
Q ss_pred cccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccC
Q 013173 309 MLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATF 342 (448)
Q Consensus 309 ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~ 342 (448)
+-. +.+..|+-.+.. ....++++|.+.
T Consensus 306 I~~----~~l~aIlP~l~~---~~~k~IiISS~~ 332 (752)
T PHA03333 306 VNP----GALLSVLPLMAV---KGTKQIHISSPV 332 (752)
T ss_pred CCH----HHHHHHHHHHcc---CCCceEEEeCCC
Confidence 765 556666666532 234567777775
No 276
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.00 E-value=0.28 Score=50.58 Aligned_cols=144 Identities=18% Similarity=0.294 Sum_probs=83.8
Q ss_pred CCCCHHHHHHHHHCCCCCCCHHHHhHHh----hHhC--------CCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCC
Q 013173 150 IDLGEALNLNIRRCKYVKPTPVQRHAIP----ISIG--------GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPR 217 (448)
Q Consensus 150 l~L~~~l~~~l~~~~~~~pt~~Q~~~i~----~i~~--------g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~ 217 (448)
++.+++-++.....|.....+.-.+.+. .+.+ -..+++.+|.|||||+.+.-.++.
T Consensus 494 FG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~------------ 561 (744)
T KOG0741|consen 494 FGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIALS------------ 561 (744)
T ss_pred cCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHHHHHhh------------
Confidence 5677777777777776655443333332 1111 135899999999999865443331
Q ss_pred CCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCC
Q 013173 218 GSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQM 297 (448)
Q Consensus 218 ~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~ 297 (448)
...|.+=|++|-.-. |.+.......+. ...+.. .-+.
T Consensus 562 ---S~FPFvKiiSpe~mi------------------------G~sEsaKc~~i~--------------k~F~DA--YkS~ 598 (744)
T KOG0741|consen 562 ---SDFPFVKIISPEDMI------------------------GLSESAKCAHIK--------------KIFEDA--YKSP 598 (744)
T ss_pred ---cCCCeEEEeChHHcc------------------------CccHHHHHHHHH--------------HHHHHh--hcCc
Confidence 334667777773221 111111111111 111111 1356
Q ss_pred eeEEEEcCCcccccCC-----CHHHH-HHHHHHcCCCCCCCcEEEEEeccCchHHHH
Q 013173 298 IRYLALDEADRMLDMG-----FEPQI-RKIVQQMDMPPPGMRQTMLFSATFPKEIQR 348 (448)
Q Consensus 298 v~~lVlDEah~ll~~g-----f~~~i-~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~ 348 (448)
++++|||++.+++|+. |...+ ..++-.++..||+.++.++|..|-..++.+
T Consensus 599 lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~ 655 (744)
T KOG0741|consen 599 LSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQ 655 (744)
T ss_pred ceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHH
Confidence 7899999999999974 44433 344455677778888888888886655543
No 277
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.99 E-value=0.46 Score=48.45 Aligned_cols=42 Identities=19% Similarity=0.358 Sum_probs=26.6
Q ss_pred CCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccC
Q 013173 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATF 342 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~ 342 (448)
+..-+++||||+|.|.. .....+++.+..+++ .. +++|.++-
T Consensus 125 ~~~~kvvIIdea~~l~~----~~~~~LLk~LEep~~-~t-~~Il~t~~ 166 (397)
T PRK14955 125 KGRYRVYIIDEVHMLSI----AAFNAFLKTLEEPPP-HA-IFIFATTE 166 (397)
T ss_pred cCCeEEEEEeChhhCCH----HHHHHHHHHHhcCCC-Ce-EEEEEeCC
Confidence 46678999999999865 345556666655433 33 44444453
No 278
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.99 E-value=0.11 Score=56.76 Aligned_cols=132 Identities=16% Similarity=0.148 Sum_probs=64.4
Q ss_pred CCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCC
Q 013173 182 GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGA 261 (448)
Q Consensus 182 g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~ 261 (448)
++-+++++|||+|||+.... |...+.... +....+||-+.|--.. ..+.++.|+...++.+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaK--LA~~~~~~~--------G~kkV~lit~Dt~Rig--A~eQL~~~a~~~gvpv~------ 246 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAK--LAARCVARE--------GADQLALLTTDSFRIG--ALEQLRIYGRILGVPVH------ 246 (767)
T ss_pred CeEEEEECCCCCcHHHHHHH--HHhhHHHHc--------CCCeEEEecCcccchH--HHHHHHHHHHhCCCCcc------
Confidence 45578999999999986543 322221110 0011234444332211 12334444433333322
Q ss_pred ChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEecc
Q 013173 262 PINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSAT 341 (448)
Q Consensus 262 ~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT 341 (448)
++.+|..+.+.+.. +.+.++|+||=+=+.... ..+...+..+.....+...++.+|||
T Consensus 247 ---------------~~~~~~~l~~al~~----~~~~D~VLIDTAGRs~~d---~~l~eel~~l~~~~~p~e~~LVLsAt 304 (767)
T PRK14723 247 ---------------AVKDAADLRFALAA----LGDKHLVLIDTVGMSQRD---RNVSEQIAMLCGVGRPVRRLLLLNAA 304 (767)
T ss_pred ---------------ccCCHHHHHHHHHH----hcCCCEEEEeCCCCCccC---HHHHHHHHHHhccCCCCeEEEEECCC
Confidence 23356666555542 345578888877765321 22222222222122344557888888
Q ss_pred Cc-hHHHHHHHhh
Q 013173 342 FP-KEIQRLASDF 353 (448)
Q Consensus 342 ~~-~~v~~l~~~~ 353 (448)
.. ..+.+++..|
T Consensus 305 ~~~~~l~~i~~~f 317 (767)
T PRK14723 305 SHGDTLNEVVHAY 317 (767)
T ss_pred CcHHHHHHHHHHH
Confidence 74 4455566666
No 279
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=94.98 E-value=0.35 Score=48.68 Aligned_cols=50 Identities=10% Similarity=0.086 Sum_probs=28.9
Q ss_pred CCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHH
Q 013173 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQR 348 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~ 348 (448)
....-+||+||+|.|.+..- +.+..|+..-... ..++.++.-+...++..
T Consensus 121 ~~~~~IvvLDEid~L~~~~~-~~LY~L~r~~~~~---~~~v~vi~i~n~~~~~~ 170 (366)
T COG1474 121 KGKTVIVILDEVDALVDKDG-EVLYSLLRAPGEN---KVKVSIIAVSNDDKFLD 170 (366)
T ss_pred cCCeEEEEEcchhhhccccc-hHHHHHHhhcccc---ceeEEEEEEeccHHHHH
Confidence 34456799999999988643 4444555444322 44555555554444333
No 280
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.94 E-value=0.083 Score=56.48 Aligned_cols=18 Identities=22% Similarity=0.265 Sum_probs=15.1
Q ss_pred CeeEEccCCCCccchhhh
Q 013173 184 DLMACAQTGSGKTAAFCF 201 (448)
Q Consensus 184 d~lv~a~TGsGKT~~~~l 201 (448)
-+|+++|.|+|||.+..+
T Consensus 39 AyLF~GPpGvGKTTlAri 56 (702)
T PRK14960 39 AYLFTGTRGVGKTTIARI 56 (702)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 369999999999987654
No 281
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=94.91 E-value=0.26 Score=58.59 Aligned_cols=66 Identities=23% Similarity=0.262 Sum_probs=45.3
Q ss_pred CCCCHHHHhHHhhHhCC--CCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHH
Q 013173 166 VKPTPVQRHAIPISIGG--RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIH 240 (448)
Q Consensus 166 ~~pt~~Q~~~i~~i~~g--~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~ 240 (448)
..+++.|+.++..++.. +-+++++..|+|||...- .++..+.... ...+..++.++||---+..+.
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~-~v~~~~~~l~--------~~~~~~V~glAPTgrAAk~L~ 1033 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFR-AVMSAVNTLP--------ESERPRVVGLGPTHRAVGEMR 1033 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHH-HHHHHHHHhh--------cccCceEEEECCcHHHHHHHH
Confidence 36899999999999875 458999999999998632 2333221110 012345888999988776543
No 282
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=94.89 E-value=0.04 Score=53.91 Aligned_cols=62 Identities=21% Similarity=0.273 Sum_probs=45.5
Q ss_pred CCCCCCCHHHHhHHhhHhCCC-CeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHH
Q 013173 163 CKYVKPTPVQRHAIPISIGGR-DLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQ 238 (448)
Q Consensus 163 ~~~~~pt~~Q~~~i~~i~~g~-d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~q 238 (448)
..|..+++-|...+..+...+ |+++++.||||||+ ++-+|..... ..-++|++--|.||-.+
T Consensus 153 i~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTT--lLNal~~~i~------------~~eRvItiEDtaELql~ 215 (355)
T COG4962 153 IIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTT--LLNALSGFID------------SDERVITIEDTAELQLA 215 (355)
T ss_pred HHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHH--HHHHHHhcCC------------CcccEEEEeehhhhccC
Confidence 367789999999998887665 99999999999998 3333332211 11259999999998654
No 283
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=94.86 E-value=0.16 Score=50.93 Aligned_cols=17 Identities=35% Similarity=0.575 Sum_probs=15.1
Q ss_pred CCeeEEccCCCCccchh
Q 013173 183 RDLMACAQTGSGKTAAF 199 (448)
Q Consensus 183 ~d~lv~a~TGsGKT~~~ 199 (448)
.++++++|+|+|||.+.
T Consensus 41 ~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVT 57 (365)
T ss_pred CcEEEECCCCCCHHHHH
Confidence 57999999999999864
No 284
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.82 E-value=0.34 Score=52.09 Aligned_cols=32 Identities=19% Similarity=0.413 Sum_probs=23.1
Q ss_pred CCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCC
Q 013173 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPP 330 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~ 330 (448)
+..-+++||||+|.|.. .....+++.+..+++
T Consensus 125 ~~~~KVvIIdEad~Lt~----~a~naLLK~LEePp~ 156 (620)
T PRK14954 125 KGRYRVYIIDEVHMLST----AAFNAFLKTLEEPPP 156 (620)
T ss_pred cCCCEEEEEeChhhcCH----HHHHHHHHHHhCCCC
Confidence 46678999999999865 345567777766543
No 285
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.71 E-value=0.53 Score=49.82 Aligned_cols=40 Identities=13% Similarity=0.274 Sum_probs=25.8
Q ss_pred CCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEe
Q 013173 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFS 339 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~S 339 (448)
....+++||||+|+|... ....+++.+..+ +....+|+.|
T Consensus 117 ~~~~kVvIIDEad~ls~~----a~naLLK~LEep-p~~~~fIL~t 156 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSKS----AFNAMLKTLEEP-PEHVKFILAT 156 (527)
T ss_pred cCCceEEEEcCcccCCHH----HHHHHHHHHhCC-CCCEEEEEEe
Confidence 356789999999988653 344556666554 4455555544
No 286
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.70 E-value=0.18 Score=50.72 Aligned_cols=41 Identities=15% Similarity=0.291 Sum_probs=24.8
Q ss_pred CCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccC
Q 013173 296 QMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATF 342 (448)
Q Consensus 296 ~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~ 342 (448)
...+++||||+|.|... ....+++.+..+ +....+|+ ++|-
T Consensus 118 ~~~kviIIDEa~~l~~~----a~naLLk~lEe~-~~~~~fIl-~t~~ 158 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRH----SFNALLKTLEEP-PQHIKFIL-ATTD 158 (363)
T ss_pred CCceEEEEEChhhcCHH----HHHHHHHHHhcC-CCCeEEEE-EcCC
Confidence 45689999999988653 334455555544 34444444 4443
No 287
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.68 E-value=0.19 Score=51.62 Aligned_cols=18 Identities=33% Similarity=0.497 Sum_probs=15.0
Q ss_pred CCeeEEccCCCCccchhh
Q 013173 183 RDLMACAQTGSGKTAAFC 200 (448)
Q Consensus 183 ~d~lv~a~TGsGKT~~~~ 200 (448)
..+++++++|+|||+...
T Consensus 96 ~vI~lvG~~GsGKTTtaa 113 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAA 113 (437)
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 458899999999998654
No 288
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=94.61 E-value=0.41 Score=52.76 Aligned_cols=28 Identities=14% Similarity=0.256 Sum_probs=18.7
Q ss_pred CCeeEEEEcCCcccccCCCHHHHHHHHHH
Q 013173 296 QMIRYLALDEADRMLDMGFEPQIRKIVQQ 324 (448)
Q Consensus 296 ~~v~~lVlDEah~ll~~gf~~~i~~i~~~ 324 (448)
..+.+|||||+|.|.... ...+..++..
T Consensus 868 r~v~IIILDEID~L~kK~-QDVLYnLFR~ 895 (1164)
T PTZ00112 868 RNVSILIIDEIDYLITKT-QKVLFTLFDW 895 (1164)
T ss_pred ccceEEEeehHhhhCccH-HHHHHHHHHH
Confidence 456789999999997642 3445455554
No 289
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.58 E-value=0.28 Score=51.09 Aligned_cols=44 Identities=11% Similarity=0.261 Sum_probs=26.0
Q ss_pred CCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCch
Q 013173 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPK 344 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~ 344 (448)
+...++|||||+|+|.. .....++..+..++ ... ++++++|-+.
T Consensus 115 ~~~~kVvIIDE~h~Lt~----~a~~~LLk~LE~p~-~~v-v~Ilattn~~ 158 (472)
T PRK14962 115 EGKYKVYIIDEVHMLTK----EAFNALLKTLEEPP-SHV-VFVLATTNLE 158 (472)
T ss_pred cCCeEEEEEEChHHhHH----HHHHHHHHHHHhCC-CcE-EEEEEeCChH
Confidence 45678999999998854 34455566665433 222 3344555433
No 290
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=94.57 E-value=0.19 Score=60.93 Aligned_cols=64 Identities=22% Similarity=0.192 Sum_probs=44.1
Q ss_pred CCCCHHHHhHHhhHhCCC--CeeEEccCCCCccchhhh--hHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHH
Q 013173 166 VKPTPVQRHAIPISIGGR--DLMACAQTGSGKTAAFCF--PIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIH 240 (448)
Q Consensus 166 ~~pt~~Q~~~i~~i~~g~--d~lv~a~TGsGKT~~~~l--pil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~ 240 (448)
..+++.|+.++..++.+. -+++++..|+|||....- -.+..+... .+..++.++||-.-+..+.
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~-----------~g~~v~glApT~~Aa~~L~ 1085 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFES-----------EQLQVIGLAPTHEAVGELK 1085 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHh-----------cCCeEEEEeChHHHHHHHH
Confidence 468999999999988664 478899999999986411 112122211 1345888999987766653
No 291
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.53 E-value=0.77 Score=49.19 Aligned_cols=45 Identities=16% Similarity=0.356 Sum_probs=26.9
Q ss_pred CCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchH
Q 013173 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKE 345 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~ 345 (448)
....+++||||+|+|.. .....+++.|..+ +....+ +|.+|-+..
T Consensus 117 ~~~~KVvIIdev~~Lt~----~a~naLLk~LEep-p~~~~f-Il~t~~~~k 161 (576)
T PRK14965 117 RSRYKIFIIDEVHMLST----NAFNALLKTLEEP-PPHVKF-IFATTEPHK 161 (576)
T ss_pred cCCceEEEEEChhhCCH----HHHHHHHHHHHcC-CCCeEE-EEEeCChhh
Confidence 45678999999998865 3344555555554 334434 444454433
No 292
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=94.52 E-value=0.36 Score=47.58 Aligned_cols=37 Identities=30% Similarity=0.434 Sum_probs=27.8
Q ss_pred CCCCCHHHHhHHhhHh----CCC---CeeEEccCCCCccchhhh
Q 013173 165 YVKPTPVQRHAIPISI----GGR---DLMACAQTGSGKTAAFCF 201 (448)
Q Consensus 165 ~~~pt~~Q~~~i~~i~----~g~---d~lv~a~TGsGKT~~~~l 201 (448)
+..+.|+|..++..+. .++ -+++.++.|+||+.....
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~ 45 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALA 45 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHH
Confidence 3567889998887654 343 389999999999986543
No 293
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.49 E-value=0.25 Score=46.04 Aligned_cols=53 Identities=21% Similarity=0.226 Sum_probs=32.1
Q ss_pred CCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhc
Q 013173 181 GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFS 247 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~ 247 (448)
.|..+++.+++|+|||...+..+.+.+.. + -.+++++ +-+...++.+.++.+.
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~-g------------~~~~~is-~e~~~~~i~~~~~~~g 71 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRD-G------------DPVIYVT-TEESRESIIRQAAQFG 71 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhc-C------------CeEEEEE-ccCCHHHHHHHHHHhC
Confidence 46789999999999998654434433321 1 1255554 3445566666665553
No 294
>PHA00729 NTP-binding motif containing protein
Probab=94.42 E-value=0.34 Score=45.11 Aligned_cols=75 Identities=12% Similarity=0.115 Sum_probs=40.6
Q ss_pred ccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcccccCC-CH----HHHHHHHHHcCCCCCCCcEEEEEeccCchHHHH
Q 013173 274 VDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMG-FE----PQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQR 348 (448)
Q Consensus 274 ~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~g-f~----~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~ 348 (448)
...++.+...|++.+....-....+.+|||||+-.-+..+ |. ..+..+...+ ....+++.|...-+.++..
T Consensus 59 ~~~~fid~~~Ll~~L~~a~~~~~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aL----rSR~~l~il~~ls~edL~~ 134 (226)
T PHA00729 59 QNSYFFELPDALEKIQDAIDNDYRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALI----RTRVSAVIFTTPSPEDLAF 134 (226)
T ss_pred CcEEEEEHHHHHHHHHHHHhcCCCCCEEEEeCCchhhcccchhhhccchHHHHHHHH----HhhCcEEEEecCCHHHHHH
Confidence 4566666666766664322223445789999953322211 11 1122233333 2234577777777777777
Q ss_pred HHHh
Q 013173 349 LASD 352 (448)
Q Consensus 349 l~~~ 352 (448)
.++.
T Consensus 135 ~Lr~ 138 (226)
T PHA00729 135 YLRE 138 (226)
T ss_pred HHHh
Confidence 6665
No 295
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=94.37 E-value=0.1 Score=56.55 Aligned_cols=9 Identities=11% Similarity=-0.071 Sum_probs=5.0
Q ss_pred CCCCCccCC
Q 013173 28 PTRSTYVPP 36 (448)
Q Consensus 28 ~~~~~~~~~ 36 (448)
...+.|+-+
T Consensus 1189 ysgGGYGgg 1197 (1282)
T KOG0921|consen 1189 YSGGGYGGG 1197 (1282)
T ss_pred CCCCCcCCC
Confidence 455556655
No 296
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.35 E-value=0.25 Score=52.21 Aligned_cols=40 Identities=13% Similarity=0.287 Sum_probs=24.7
Q ss_pred CCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEe
Q 013173 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFS 339 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~S 339 (448)
...-+++||||||+|.. .....+++.+..+ +....+|+.+
T Consensus 117 ~g~~kViIIDEa~~ls~----~a~naLLK~LEep-p~~v~fIL~T 156 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSK----QSFNALLKTLEEP-PEYVKFILAT 156 (546)
T ss_pred cCCcEEEEEechhhccH----HHHHHHHHHHhcC-CCCceEEEEE
Confidence 34568999999999865 3344555555544 4445444444
No 297
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=94.30 E-value=0.55 Score=51.54 Aligned_cols=144 Identities=13% Similarity=0.126 Sum_probs=78.7
Q ss_pred CCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccC----CcEEEEE
Q 013173 182 GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQT----GVKVVVA 257 (448)
Q Consensus 182 g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~----~~~~~~~ 257 (448)
|--+|+.-=.|-|||+..+. .|+.++.... ..--+||||+|...+.+ ...+|.++.... .+.|..+
T Consensus 696 GsGcILAHcMGLGKTlQVvt-flhTvL~c~k--------lg~ktaLvV~PlNt~~N-W~~EFekWm~~~e~~~~leV~eL 765 (1567)
T KOG1015|consen 696 GSGCILAHCMGLGKTLQVVT-FLHTVLLCDK--------LGFKTALVVCPLNTALN-WMNEFEKWMEGLEDDEKLEVSEL 765 (1567)
T ss_pred CcchHHHHhhcccceehhhH-HHHHHHHhhc--------cCCceEEEEcchHHHHH-HHHHHHHhcccccccccceeehh
Confidence 34466666689999998543 4444443221 11235999999887654 477788876532 2334332
Q ss_pred ECCCChH---HHHHHHhcCccEEEeChHHHHHHHhccc-------------ccCCCeeEEEEcCCcccccCCCHHHHHHH
Q 013173 258 YGGAPIN---QQLRELERGVDILVATPGRLVDLLERAR-------------VSLQMIRYLALDEADRMLDMGFEPQIRKI 321 (448)
Q Consensus 258 ~gg~~~~---~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~-------------~~l~~v~~lVlDEah~ll~~gf~~~i~~i 321 (448)
..=.... ..+..|...-.|.|.-...+..+-.... +--..-++||.||+|.|-.. ...+.+.
T Consensus 766 ~~vkr~e~R~~~L~~W~~~ggVmIiGYdmyRnLa~gr~vk~rk~ke~f~k~lvdpGPD~vVCDE~HiLKNe--ksa~Ska 843 (1567)
T KOG1015|consen 766 ATVKRPEERSYMLQRWQEDGGVMIIGYDMYRNLAQGRNVKSRKLKEIFNKALVDPGPDFVVCDEGHILKNE--KSAVSKA 843 (1567)
T ss_pred hhccChHHHHHHHHHHHhcCCEEEEehHHHHHHhcccchhhhHHHHHHHHhccCCCCCeEEecchhhhccc--hHHHHHH
Confidence 2111112 2233444444666666655544432111 11134589999999987543 2455555
Q ss_pred HHHcCCCCCCCcEEEEEeccC
Q 013173 322 VQQMDMPPPGMRQTMLFSATF 342 (448)
Q Consensus 322 ~~~l~~~~~~~~q~i~~SAT~ 342 (448)
+..+ ...| -|++|.|.
T Consensus 844 m~~i----rtkR-RI~LTGTP 859 (1567)
T KOG1015|consen 844 MNSI----RTKR-RIILTGTP 859 (1567)
T ss_pred HHHH----Hhhe-eEEeecCc
Confidence 5555 2333 46677774
No 298
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.29 E-value=0.13 Score=48.52 Aligned_cols=54 Identities=15% Similarity=0.183 Sum_probs=37.7
Q ss_pred CCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcc
Q 013173 181 GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSY 248 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~ 248 (448)
.|..+++.+++|+|||...+-.+...+.+ +-.+++++ +-+-..|+.+.+..+..
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~-------------ge~~lyvs-~ee~~~~i~~~~~~~g~ 73 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM-------------GEPGIYVA-LEEHPVQVRRNMAQFGW 73 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc-------------CCcEEEEE-eeCCHHHHHHHHHHhCC
Confidence 46779999999999999665555544422 12367776 56777788888877653
No 299
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=94.17 E-value=0.21 Score=48.50 Aligned_cols=20 Identities=20% Similarity=0.213 Sum_probs=16.6
Q ss_pred CCCCeeEEccCCCCccchhh
Q 013173 181 GGRDLMACAQTGSGKTAAFC 200 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~~ 200 (448)
.+.++++.+++|+|||.+..
T Consensus 57 ~~~~vll~G~pGTGKT~lA~ 76 (284)
T TIGR02880 57 PTLHMSFTGNPGTGKTTVAL 76 (284)
T ss_pred CCceEEEEcCCCCCHHHHHH
Confidence 35589999999999998653
No 300
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.13 E-value=0.18 Score=46.95 Aligned_cols=134 Identities=14% Similarity=0.133 Sum_probs=68.2
Q ss_pred CCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCC-----cEEE
Q 013173 181 GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTG-----VKVV 255 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~-----~~~~ 255 (448)
.|..+++.+++|+|||...+-.+.+.+.+.+ -.+++++ +.+-..++.+.++.+..... -+..
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~g------------e~vlyvs-~ee~~~~l~~~~~s~g~d~~~~~~~g~l~ 84 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFG------------EKVLYVS-FEEPPEELIENMKSFGWDLEEYEDSGKLK 84 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--------------EEEEE-SSS-HHHHHHHHHTTTS-HHHHHHTTSEE
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcC------------CcEEEEE-ecCCHHHHHHHHHHcCCcHHHHhhcCCEE
Confidence 4577999999999999876665665554411 1266666 45556777777777642110 0111
Q ss_pred EEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcccccCC----CHHHHHHHHHHcCCCCCC
Q 013173 256 VAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMG----FEPQIRKIVQQMDMPPPG 331 (448)
Q Consensus 256 ~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~g----f~~~i~~i~~~l~~~~~~ 331 (448)
.+......... . -..+..+...+.... .-...+.+|||-...+.... +...+..+...+ ..
T Consensus 85 ~~d~~~~~~~~--------~--~~~~~~l~~~i~~~i-~~~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l----~~ 149 (226)
T PF06745_consen 85 IIDAFPERIGW--------S--PNDLEELLSKIREAI-EELKPDRVVIDSLSALLLYDDPEELRRFLRALIKFL----KS 149 (226)
T ss_dssp EEESSGGGST---------T--SCCHHHHHHHHHHHH-HHHTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHH----HH
T ss_pred EEecccccccc--------c--ccCHHHHHHHHHHHH-HhcCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHH----HH
Confidence 11110000000 0 112333333332211 11122789999999883222 445566666666 33
Q ss_pred CcEEEEEeccC
Q 013173 332 MRQTMLFSATF 342 (448)
Q Consensus 332 ~~q~i~~SAT~ 342 (448)
...++++++..
T Consensus 150 ~~~t~llt~~~ 160 (226)
T PF06745_consen 150 RGVTTLLTSEM 160 (226)
T ss_dssp TTEEEEEEEEE
T ss_pred CCCEEEEEEcc
Confidence 34566666663
No 301
>PRK11054 helD DNA helicase IV; Provisional
Probab=94.12 E-value=0.17 Score=55.12 Aligned_cols=71 Identities=21% Similarity=0.222 Sum_probs=50.8
Q ss_pred CCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013173 166 VKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK 245 (448)
Q Consensus 166 ~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~ 245 (448)
..+++-|+.++-. ...+++|.|..|||||.+..- -+..++.... ...-++|+|+.|+..|..+.+.+..
T Consensus 195 ~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~-r~ayLl~~~~--------~~~~~IL~ltft~~AA~em~eRL~~ 263 (684)
T PRK11054 195 SPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVA-RAGWLLARGQ--------AQPEQILLLAFGRQAAEEMDERIRE 263 (684)
T ss_pred CCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHH-HHHHHHHhCC--------CCHHHeEEEeccHHHHHHHHHHHHH
Confidence 4589999999854 335689999999999997433 3333333211 1123599999999999999998876
Q ss_pred hc
Q 013173 246 FS 247 (448)
Q Consensus 246 ~~ 247 (448)
..
T Consensus 264 ~l 265 (684)
T PRK11054 264 RL 265 (684)
T ss_pred hc
Confidence 54
No 302
>PRK05973 replicative DNA helicase; Provisional
Probab=94.10 E-value=0.13 Score=48.41 Aligned_cols=85 Identities=13% Similarity=0.070 Sum_probs=51.2
Q ss_pred cCCCCHHHHHHHHHCCCCCCCHHHHh---------HHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCC
Q 013173 149 EIDLGEALNLNIRRCKYVKPTPVQRH---------AIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGS 219 (448)
Q Consensus 149 ~l~L~~~l~~~l~~~~~~~pt~~Q~~---------~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~ 219 (448)
.++|++.+-+.-.+.||..-+-+... ..--+..|.-++|.|++|+|||+..+-.+.+.+.+
T Consensus 22 ~~~~~~~~~~~a~~~g~~~w~~~~~~~~~~~p~~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~---------- 91 (237)
T PRK05973 22 NIPLHEALDRIAAEEGFSSWSLLAAKAAATTPAEELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKS---------- 91 (237)
T ss_pred CCcHHHHHHHHHHHhccchHHHHHHhccCCCCHHHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhc----------
Confidence 34566777666666677653333222 22334456778999999999999765554443321
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHHHHhc
Q 013173 220 RTVYPLALILAPTRELSSQIHVEAKKFS 247 (448)
Q Consensus 220 ~~~~~~~lil~PtreL~~qi~~~~~~~~ 247 (448)
+-.++|++ .-+-..|+.+.+..+.
T Consensus 92 ---Ge~vlyfS-lEes~~~i~~R~~s~g 115 (237)
T PRK05973 92 ---GRTGVFFT-LEYTEQDVRDRLRALG 115 (237)
T ss_pred ---CCeEEEEE-EeCCHHHHHHHHHHcC
Confidence 12356663 3444577777777763
No 303
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.10 E-value=0.096 Score=52.25 Aligned_cols=104 Identities=26% Similarity=0.323 Sum_probs=56.6
Q ss_pred CCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCC
Q 013173 183 RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAP 262 (448)
Q Consensus 183 ~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~ 262 (448)
+|+|+.+|.|+|||+.. |+|+ ...|+...+++||.-
T Consensus 385 RNilfyGPPGTGKTm~A---------------------------------relA-----------r~SGlDYA~mTGGDV 420 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMFA---------------------------------RELA-----------RHSGLDYAIMTGGDV 420 (630)
T ss_pred hheeeeCCCCCCchHHH---------------------------------HHHH-----------hhcCCceehhcCCCc
Confidence 78999999999999853 2222 224666667777643
Q ss_pred hHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcccccC----CCHHHHHHHHHHc-CCCCCCCcEEEE
Q 013173 263 INQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDM----GFEPQIRKIVQQM-DMPPPGMRQTML 337 (448)
Q Consensus 263 ~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~----gf~~~i~~i~~~l-~~~~~~~~q~i~ 337 (448)
..--... |+--..|.||-.+.+--| +|.|||||.+|.. +..+..+..++.+ -......+.+|+
T Consensus 421 APlG~qa--------VTkiH~lFDWakkS~rGL----llFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivL 488 (630)
T KOG0742|consen 421 APLGAQA--------VTKIHKLFDWAKKSRRGL----LLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVL 488 (630)
T ss_pred cccchHH--------HHHHHHHHHHHhhcccce----EEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEE
Confidence 2111000 122234566655433222 5899999998743 2223333333222 111123355788
Q ss_pred EeccC
Q 013173 338 FSATF 342 (448)
Q Consensus 338 ~SAT~ 342 (448)
+=||.
T Consensus 489 vlAtN 493 (630)
T KOG0742|consen 489 VLATN 493 (630)
T ss_pred EeccC
Confidence 88886
No 304
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=94.06 E-value=0.13 Score=60.01 Aligned_cols=122 Identities=19% Similarity=0.162 Sum_probs=75.8
Q ss_pred CCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013173 167 KPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF 246 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~ 246 (448)
++|+-|..+|. ..+++++|.|.-|||||.+..-=++..+.... .--++|+|+=|+..+..+.+.+.+-
T Consensus 1 ~~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~----------~~~~il~~tFt~~aa~e~~~ri~~~ 68 (1232)
T TIGR02785 1 QWTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRGV----------DIDRLLVVTFTNAAAREMKERIEEA 68 (1232)
T ss_pred CCCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCC----------CHhhEEEEeccHHHHHHHHHHHHHH
Confidence 46899999997 36889999999999999986555555554321 1124899999999999988888763
Q ss_pred ccc-CCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHH-hcccc--cCCCeeEEEEcCCcc
Q 013173 247 SYQ-TGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLL-ERARV--SLQMIRYLALDEADR 308 (448)
Q Consensus 247 ~~~-~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l-~~~~~--~l~~v~~lVlDEah~ 308 (448)
... ..-.. ......+.+..-...-|+|-..+...+ .+... ++ +-.+=|+||...
T Consensus 69 l~~~~~~~p-------~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~l-dP~F~i~de~e~ 126 (1232)
T TIGR02785 69 LQKALQQEP-------NSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDL-DPSFRILTDTEQ 126 (1232)
T ss_pred HHHHHhcCc-------hhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCC-CCCceeCCHHHH
Confidence 211 10000 001112222233467789988886544 33321 22 113456888875
No 305
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.03 E-value=1.9 Score=43.94 Aligned_cols=57 Identities=7% Similarity=0.094 Sum_probs=30.6
Q ss_pred CCeeEEEEcCCcccc-cCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCch-HHHHHHHhh
Q 013173 296 QMIRYLALDEADRML-DMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPK-EIQRLASDF 353 (448)
Q Consensus 296 ~~v~~lVlDEah~ll-~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~-~v~~l~~~~ 353 (448)
...++||||=+-++. +..-...+..++...... .+.-.++.+|||... ++...+..|
T Consensus 298 ~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~-~~~e~~LVLsAt~~~~~~~~~~~~f 356 (432)
T PRK12724 298 DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEK-DSVENLLVLSSTSSYHHTLTVLKAY 356 (432)
T ss_pred CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCC-CCCeEEEEEeCCCCHHHHHHHHHHh
Confidence 456779999766542 211223333444333211 122347888999866 666666555
No 306
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=93.96 E-value=1.2 Score=41.72 Aligned_cols=53 Identities=8% Similarity=0.037 Sum_probs=32.8
Q ss_pred CCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhc
Q 013173 181 GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFS 247 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~ 247 (448)
.|.-+++.+++|+|||...+..+...+.+ +-+++++.= .+-..++.+.+..+.
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~-------------g~~~~y~~~-e~~~~~~~~~~~~~g 76 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQ-------------GKKVYVITT-ENTSKSYLKQMESVK 76 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhC-------------CCEEEEEEc-CCCHHHHHHHHHHCC
Confidence 35678999999999998665544433321 123555543 444566667677764
No 307
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=93.94 E-value=0.12 Score=51.07 Aligned_cols=65 Identities=26% Similarity=0.289 Sum_probs=41.6
Q ss_pred HHHHCCCCCCCHHHHhHHhhH-hCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHH
Q 013173 159 NIRRCKYVKPTPVQRHAIPIS-IGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELS 236 (448)
Q Consensus 159 ~l~~~~~~~pt~~Q~~~i~~i-~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~ 236 (448)
.+.+.|+ +++.|...+..+ ..+++++++++||||||.. +-.++..+... ....+++++-.+.||.
T Consensus 126 ~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~aL~~~~~~~----------~~~~rivtIEd~~El~ 191 (319)
T PRK13894 126 QYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTTL-VNAIINEMVIQ----------DPTERVFIIEDTGEIQ 191 (319)
T ss_pred HHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHhhhhc----------CCCceEEEEcCCCccc
Confidence 3444454 567777777654 5778999999999999964 33444433211 1123578888888873
No 308
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=93.91 E-value=0.44 Score=45.94 Aligned_cols=59 Identities=17% Similarity=0.220 Sum_probs=31.9
Q ss_pred CCeeEEEEcCCccccc-CCCHHHHHHHHHHcCC--CCCCCcEEEEEeccCchHHHHHHHhhh
Q 013173 296 QMIRYLALDEADRMLD-MGFEPQIRKIVQQMDM--PPPGMRQTMLFSATFPKEIQRLASDFL 354 (448)
Q Consensus 296 ~~v~~lVlDEah~ll~-~gf~~~i~~i~~~l~~--~~~~~~q~i~~SAT~~~~v~~l~~~~l 354 (448)
...++|++|=+-++-. .....++..+...+.. .....--++.++||...+....+..|.
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~ 214 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFN 214 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHHH
Confidence 3456677776665432 1223455555554420 111344578899998766555555554
No 309
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.86 E-value=2 Score=43.22 Aligned_cols=19 Identities=37% Similarity=0.447 Sum_probs=15.8
Q ss_pred CCCeeEEccCCCCccchhh
Q 013173 182 GRDLMACAQTGSGKTAAFC 200 (448)
Q Consensus 182 g~d~lv~a~TGsGKT~~~~ 200 (448)
++.+++++|||+|||....
T Consensus 206 ~~ii~lvGptGvGKTTt~a 224 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLV 224 (407)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 5668999999999998643
No 310
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=93.81 E-value=0.12 Score=47.84 Aligned_cols=29 Identities=28% Similarity=0.431 Sum_probs=21.1
Q ss_pred CCeeEEEEcCCcccccCCCHHHHHHHHHHc
Q 013173 296 QMIRYLALDEADRMLDMGFEPQIRKIVQQM 325 (448)
Q Consensus 296 ~~v~~lVlDEah~ll~~gf~~~i~~i~~~l 325 (448)
..-+.+|+||||-|.+ |-...+++.++..
T Consensus 112 grhKIiILDEADSMT~-gAQQAlRRtMEiy 140 (333)
T KOG0991|consen 112 GRHKIIILDEADSMTA-GAQQALRRTMEIY 140 (333)
T ss_pred CceeEEEeeccchhhh-HHHHHHHHHHHHH
Confidence 6678899999998865 4445566666655
No 311
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=93.76 E-value=0.086 Score=53.47 Aligned_cols=48 Identities=21% Similarity=0.255 Sum_probs=37.8
Q ss_pred CeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013173 184 DLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF 246 (448)
Q Consensus 184 d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~ 246 (448)
+++++|+||||||.++++|-+... ...+||+=|--|+........++.
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~---------------~~s~vv~D~Kge~~~~t~~~r~~~ 48 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW---------------PGSVVVLDPKGENFELTSEHRRAL 48 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC---------------CCCEEEEccchhHHHHHHHHHHHc
Confidence 578999999999999999876432 123899999999998777666654
No 312
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=93.68 E-value=0.65 Score=51.58 Aligned_cols=100 Identities=11% Similarity=0.074 Sum_probs=65.3
Q ss_pred EEEEEeccCchHHHHHHHhhhcCcEEEEecccccccCceeE---EEEEecccchHHHHHHHHHHHHhcCCCCCCCcEEEE
Q 013173 334 QTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQ---RVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVF 410 (448)
Q Consensus 334 q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q---~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~tlVF 410 (448)
.+.+||.|...+-.++..-|--+-+.+- ...+.+.. ...+.....|..++.+.+..... ++.|+||-
T Consensus 505 kl~GmTGTa~~e~~Ef~~iY~l~v~~iP-----t~kp~~r~d~~d~iy~t~~~k~~ai~~ei~~~~~-----~grPvLig 574 (970)
T PRK12899 505 KLAGMTGTAITESREFKEIYNLYVLQVP-----TFKPCLRIDHNDEFYMTEREKYHAIVAEIASIHR-----KGNPILIG 574 (970)
T ss_pred hhcccCCCCHHHHHHHHHHhCCCEEECC-----CCCCceeeeCCCcEecCHHHHHHHHHHHHHHHHh-----CCCCEEEE
Confidence 5778999986665555333322222221 11111111 12345556788887777666533 37899999
Q ss_pred eCchhhHHHHHHHHHHCCCCeEEecCCCCHHHHHH
Q 013173 411 VETKKGADALEHWLYMNGFPATTIHGDRTQQRTSI 445 (448)
Q Consensus 411 ~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~ 445 (448)
|.|+...+.|+..|...|++...++.. +.+++.
T Consensus 575 t~si~~se~ls~~L~~~gi~h~vLNak--~~~~Ea 607 (970)
T PRK12899 575 TESVEVSEKLSRILRQNRIEHTVLNAK--NHAQEA 607 (970)
T ss_pred eCcHHHHHHHHHHHHHcCCcceecccc--hhhhHH
Confidence 999999999999999999999999987 334443
No 313
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=93.66 E-value=0.37 Score=52.16 Aligned_cols=140 Identities=21% Similarity=0.224 Sum_probs=78.5
Q ss_pred eeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChH
Q 013173 185 LMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPIN 264 (448)
Q Consensus 185 ~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~ 264 (448)
-|+.-.-|-|||..-+.-++..-.... + .......-..||+||+--+ .|...++.+......+.+.+.+| ..
T Consensus 155 gIladd~glgkt~~ti~l~l~~~~~~~---~-~~~~~~~kttLivcp~s~~-~qW~~elek~~~~~~l~v~v~~g---r~ 226 (674)
T KOG1001|consen 155 GILADDMGLGKTVKTIALILKQKLKSK---E-EDRQKEFKTTLIVCPTSLL-TQWKTELEKVTEEDKLSIYVYHG---RT 226 (674)
T ss_pred ceEeeccccchHHHHHHHHHhcccCCc---c-hhhccccCceeEecchHHH-HHHHHHHhccCCccceEEEEecc---cc
Confidence 567777899999875433322111111 0 0001122347888887665 45555557766666677777666 11
Q ss_pred HHHHHHhcCccEEEeChHHHHHHHhcccccCCCe--eEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccC
Q 013173 265 QQLRELERGVDILVATPGRLVDLLERARVSLQMI--RYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATF 342 (448)
Q Consensus 265 ~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v--~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~ 342 (448)
........++||++|++.|.. ..+..+ -.+|+||||.+-... .+....+..+ ...+ --.+|+|.
T Consensus 227 -kd~~el~~~dVVltTy~il~~------~~l~~i~w~Riildea~~ikn~~--tq~~~a~~~L----~a~~-RWcLtgtP 292 (674)
T KOG1001|consen 227 -KDKSELNSYDVVLTTYDILKN------SPLVKIKWLRIVLDEAHTIKNKD--TQIFKAVCQL----DAKY-RWCLTGTP 292 (674)
T ss_pred -cccchhcCCceEEeeHHHhhc------ccccceeEEEEEeccccccCCcc--hHhhhhheee----ccce-eeeecCCh
Confidence 222223457899999998874 122223 458999999887643 2333333333 1222 36778886
Q ss_pred chHH
Q 013173 343 PKEI 346 (448)
Q Consensus 343 ~~~v 346 (448)
....
T Consensus 293 iqn~ 296 (674)
T KOG1001|consen 293 IQNN 296 (674)
T ss_pred hhhh
Confidence 5443
No 314
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=93.57 E-value=0.4 Score=50.51 Aligned_cols=131 Identities=17% Similarity=0.130 Sum_probs=83.8
Q ss_pred CCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhccc-CCcEEEEEEC
Q 013173 181 GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQ-TGVKVVVAYG 259 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~-~~~~~~~~~g 259 (448)
+.|-.++--|--.|||+ |+.||+..++.. ..+.++.+++.-+.-++-+++++..-+.. .+-+.+.-..
T Consensus 201 KQkaTVFLVPRRHGKTW-f~VpiIsllL~s----------~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~k 269 (668)
T PHA03372 201 KQKATVFLVPRRHGKTW-FIIPIISFLLKN----------IIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIENK 269 (668)
T ss_pred hccceEEEecccCCcee-hHHHHHHHHHHh----------hcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeeec
Confidence 44567888899999998 588999988874 23456999999999888888877643321 1111111111
Q ss_pred CCChHHHHHHHhcCccEEEeChHHHH-----HHHhcccccCCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcE
Q 013173 260 GAPINQQLRELERGVDILVATPGRLV-----DLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQ 334 (448)
Q Consensus 260 g~~~~~~~~~l~~~~~Ilv~Tp~~l~-----~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q 334 (448)
+--|.+.-||.=- .....+.+.-++..+|+|||||-+-. +.+..|+-.+. .++..
T Consensus 270 -------------~~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI~~----~a~~tilgfm~---q~~~K 329 (668)
T PHA03372 270 -------------DNVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIKK----DAFNTILGFLA---QNTTK 329 (668)
T ss_pred -------------CcEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhccCH----HHHHHhhhhhc---ccCce
Confidence 1134444443321 11122345567889999999997744 55666776664 45677
Q ss_pred EEEEeccC
Q 013173 335 TMLFSATF 342 (448)
Q Consensus 335 ~i~~SAT~ 342 (448)
+|..|.|-
T Consensus 330 iIfISS~N 337 (668)
T PHA03372 330 IIFISSTN 337 (668)
T ss_pred EEEEeCCC
Confidence 88888884
No 315
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=93.50 E-value=0.021 Score=59.71 Aligned_cols=8 Identities=50% Similarity=0.916 Sum_probs=0.0
Q ss_pred CCccCCCC
Q 013173 31 STYVPPHL 38 (448)
Q Consensus 31 ~~~~~~~~ 38 (448)
.-|+||..
T Consensus 513 ~~y~~p~~ 520 (556)
T PF05918_consen 513 QQYVPPSG 520 (556)
T ss_dssp --------
T ss_pred cccCCCCC
Confidence 44555544
No 316
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=93.49 E-value=0.44 Score=44.68 Aligned_cols=54 Identities=7% Similarity=0.026 Sum_probs=33.4
Q ss_pred hCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhc
Q 013173 180 IGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFS 247 (448)
Q Consensus 180 ~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~ 247 (448)
..+.-+++.+++|+|||+..+-.+.. +.+. +.++++++ +-+-..++.+.+..+.
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~-~~~~------------g~~~~yi~-~e~~~~~~~~~~~~~g 75 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYG-FLQN------------GYSVSYVS-TQLTTTEFIKQMMSLG 75 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH-HHhC------------CCcEEEEe-CCCCHHHHHHHHHHhC
Confidence 35778999999999999964333332 2221 12367776 5555566666666554
No 317
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.39 E-value=1 Score=48.68 Aligned_cols=44 Identities=14% Similarity=0.320 Sum_probs=26.6
Q ss_pred CCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCch
Q 013173 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPK 344 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~ 344 (448)
....+++||||||.|.. .....+++.+..++ ... +++|.++-+.
T Consensus 119 ~~~~KViIIDEad~Lt~----~a~naLLK~LEePp-~~t-vfIL~t~~~~ 162 (620)
T PRK14948 119 QARWKVYVIDECHMLST----AAFNALLKTLEEPP-PRV-VFVLATTDPQ 162 (620)
T ss_pred cCCceEEEEECccccCH----HHHHHHHHHHhcCC-cCe-EEEEEeCChh
Confidence 35568999999998865 44556666666543 333 3344444333
No 318
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=93.35 E-value=0.4 Score=49.90 Aligned_cols=149 Identities=10% Similarity=0.048 Sum_probs=85.1
Q ss_pred CCCHHHHhHHhhHhCC----------CCeeEEccCCCCccchhh-hhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHH
Q 013173 167 KPTPVQRHAIPISIGG----------RDLMACAQTGSGKTAAFC-FPIISGIMREQYVQRPRGSRTVYPLALILAPTREL 235 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~~g----------~d~lv~a~TGsGKT~~~~-lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL 235 (448)
..-|+|+-++-.++.- +..++..|-+-|||.... +.+...++... .+-...|++|+.+-
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~----------~~~~~~i~A~s~~q 130 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWR----------SGAGIYILAPSVEQ 130 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhh----------cCCcEEEEeccHHH
Confidence 4678999999887721 347889999999997544 33333333321 22348999999999
Q ss_pred HHHHHHHHHHhcccCC-cEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHh--cccccCCCeeEEEEcCCcccccC
Q 013173 236 SSQIHVEAKKFSYQTG-VKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLE--RARVSLQMIRYLALDEADRMLDM 312 (448)
Q Consensus 236 ~~qi~~~~~~~~~~~~-~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~--~~~~~l~~v~~lVlDEah~ll~~ 312 (448)
+.+.++.++....... +...+ ..-.....|.+.-....+..+. .+..+-.+..+.|+||.|.....
T Consensus 131 a~~~F~~ar~mv~~~~~l~~~~-----------~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~ 199 (546)
T COG4626 131 AANSFNPARDMVKRDDDLRDLC-----------NVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQ 199 (546)
T ss_pred HHHhhHHHHHHHHhCcchhhhh-----------ccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCH
Confidence 9999999987653322 00000 0000001121111111112221 12345566778999999987664
Q ss_pred CCHHHHHHHHHHcCCCCCCCcEEEEEec
Q 013173 313 GFEPQIRKIVQQMDMPPPGMRQTMLFSA 340 (448)
Q Consensus 313 gf~~~i~~i~~~l~~~~~~~~q~i~~SA 340 (448)
+ ..+..+...+... +..+++..|-
T Consensus 200 ~--~~~~~~~~g~~ar--~~~l~~~ITT 223 (546)
T COG4626 200 E--DMYSEAKGGLGAR--PEGLVVYITT 223 (546)
T ss_pred H--HHHHHHHhhhccC--cCceEEEEec
Confidence 3 5666666666443 3455555544
No 319
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=93.29 E-value=0.63 Score=52.46 Aligned_cols=79 Identities=13% Similarity=0.243 Sum_probs=61.4
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHH---hc-CccEEEeChHHHHHHHhcccccCCCe
Q 013173 223 YPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLREL---ER-GVDILVATPGRLVDLLERARVSLQMI 298 (448)
Q Consensus 223 ~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~~-~~~Ilv~Tp~~l~~~l~~~~~~l~~v 298 (448)
+.+++|++|+++-+..+++.++++. .+.++..++|+++..+....+ .. ..+|||||. .+. ..+++.++
T Consensus 660 g~qv~if~n~i~~~e~l~~~L~~~~--p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~-----iie-~GIDIp~v 731 (926)
T TIGR00580 660 GGQVFYVHNRIESIEKLATQLRELV--PEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTT-----IIE-TGIDIPNA 731 (926)
T ss_pred CCeEEEEECCcHHHHHHHHHHHHhC--CCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhh-cccccccC
Confidence 4579999999999999999988863 357899999998865544333 23 489999995 333 35689999
Q ss_pred eEEEEcCCccc
Q 013173 299 RYLALDEADRM 309 (448)
Q Consensus 299 ~~lVlDEah~l 309 (448)
.+||++.+|++
T Consensus 732 ~~VIi~~a~~~ 742 (926)
T TIGR00580 732 NTIIIERADKF 742 (926)
T ss_pred CEEEEecCCCC
Confidence 99999999864
No 320
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=93.21 E-value=0.19 Score=49.50 Aligned_cols=58 Identities=28% Similarity=0.289 Sum_probs=38.3
Q ss_pred CCHHHHhHHhhHh-CCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHH
Q 013173 168 PTPVQRHAIPISI-GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELS 236 (448)
Q Consensus 168 pt~~Q~~~i~~i~-~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~ 236 (448)
+++.|...+..+. .+.+++++++||||||+.. -.++..+.... ..-+++++-.+.||.
T Consensus 129 ~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll-~aL~~~i~~~~----------~~~rivtiEd~~El~ 187 (323)
T PRK13833 129 MTEAQASVIRSAIDSRLNIVISGGTGSGKTTLA-NAVIAEIVASA----------PEDRLVILEDTAEIQ 187 (323)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHHhcCC----------CCceEEEecCCcccc
Confidence 5677777776544 6789999999999999842 23333332111 123578888888874
No 321
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=93.19 E-value=0.13 Score=53.63 Aligned_cols=50 Identities=26% Similarity=0.348 Sum_probs=39.6
Q ss_pred CCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhc
Q 013173 183 RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFS 247 (448)
Q Consensus 183 ~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~ 247 (448)
.++++.|+||||||..|++|.|-.. . .-+||+=|--||........++.+
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~~---~------------~s~iV~D~KgEl~~~t~~~r~~~G 94 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLNY---P------------GSMIVTDPKGELYEKTAGYRKKRG 94 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHhc---c------------CCEEEEECCCcHHHHHHHHHHHCC
Confidence 5799999999999999999976321 1 128899999999988887777643
No 322
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=93.13 E-value=0.17 Score=55.31 Aligned_cols=69 Identities=19% Similarity=0.208 Sum_probs=50.6
Q ss_pred CCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhh-hcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013173 167 KPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMRE-QYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK 245 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~-~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~ 245 (448)
.+++-|+.++.. ....++|.|..|||||.+..-= +.+++.. +. ..-++|+|+-|+..|..+.+.+.+
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~R-ia~Li~~~~v---------~p~~IL~lTFT~kAA~em~~Rl~~ 69 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNK-IAHLIRGCGY---------QARHIAAVTFTNKAAREMKERVAQ 69 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHH-HHHHHHhcCC---------CHHHeeeEechHHHHHHHHHHHHH
Confidence 478999999865 3467899999999999984433 3334432 21 112499999999999999998887
Q ss_pred hc
Q 013173 246 FS 247 (448)
Q Consensus 246 ~~ 247 (448)
+.
T Consensus 70 ~l 71 (672)
T PRK10919 70 TL 71 (672)
T ss_pred Hh
Confidence 64
No 323
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=93.13 E-value=0.12 Score=49.97 Aligned_cols=19 Identities=32% Similarity=0.492 Sum_probs=15.6
Q ss_pred CCCeeEEccCCCCccchhh
Q 013173 182 GRDLMACAQTGSGKTAAFC 200 (448)
Q Consensus 182 g~d~lv~a~TGsGKT~~~~ 200 (448)
++.+++++|||+|||+...
T Consensus 194 ~~vi~~vGptGvGKTTt~~ 212 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLA 212 (282)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4568899999999998643
No 324
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=93.09 E-value=0.11 Score=55.11 Aligned_cols=31 Identities=29% Similarity=0.306 Sum_probs=23.3
Q ss_pred CCCeeEEEEcCCcccccCCCHHHHHHHHHHc
Q 013173 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQM 325 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l 325 (448)
+++-+++|+||+---+|..-+..+.+.+..+
T Consensus 486 l~~~~iliLDE~TSaLD~~te~~I~~~l~~~ 516 (529)
T TIGR02868 486 LADAPILLLDEPTEHLDAGTESELLEDLLAA 516 (529)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHh
Confidence 5777889999999888866666666666554
No 325
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.06 E-value=0.078 Score=53.26 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=18.7
Q ss_pred CCCeeEEccCCCCccchhhhhHHHHHh
Q 013173 182 GRDLMACAQTGSGKTAAFCFPIISGIM 208 (448)
Q Consensus 182 g~d~lv~a~TGsGKT~~~~lpil~~l~ 208 (448)
..|+|+.+|||||||+... .|.+++
T Consensus 226 KSNvLllGPtGsGKTllaq--TLAr~l 250 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQ--TLARVL 250 (564)
T ss_pred cccEEEECCCCCchhHHHH--HHHHHh
Confidence 3579999999999999543 444444
No 326
>PLN03025 replication factor C subunit; Provisional
Probab=93.05 E-value=0.43 Score=47.10 Aligned_cols=18 Identities=28% Similarity=0.532 Sum_probs=15.2
Q ss_pred CCeeEEccCCCCccchhh
Q 013173 183 RDLMACAQTGSGKTAAFC 200 (448)
Q Consensus 183 ~d~lv~a~TGsGKT~~~~ 200 (448)
.++++++|.|+|||....
T Consensus 35 ~~lll~Gp~G~GKTtla~ 52 (319)
T PLN03025 35 PNLILSGPPGTGKTTSIL 52 (319)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 468999999999998643
No 327
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.04 E-value=0.019 Score=49.04 Aligned_cols=16 Identities=25% Similarity=0.430 Sum_probs=13.9
Q ss_pred CeeEEccCCCCccchh
Q 013173 184 DLMACAQTGSGKTAAF 199 (448)
Q Consensus 184 d~lv~a~TGsGKT~~~ 199 (448)
++++.+++|+|||...
T Consensus 1 ~vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEEESSSSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 4899999999999853
No 328
>PRK10689 transcription-repair coupling factor; Provisional
Probab=93.00 E-value=0.91 Score=52.44 Aligned_cols=93 Identities=13% Similarity=0.232 Sum_probs=66.8
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHH---h-cCccEEEeChHHHHHHHhcccccCCCe
Q 013173 223 YPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLREL---E-RGVDILVATPGRLVDLLERARVSLQMI 298 (448)
Q Consensus 223 ~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~-~~~~Ilv~Tp~~l~~~l~~~~~~l~~v 298 (448)
+.+++|++|+++-+..+++.+++.. .+.++.+++|+++..+..+.+ . ...+|||||. .+. ..+++.++
T Consensus 809 ~gqv~vf~n~i~~ie~la~~L~~~~--p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTd-----Iie-rGIDIP~v 880 (1147)
T PRK10689 809 GGQVYYLYNDVENIQKAAERLAELV--PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT-----IIE-TGIDIPTA 880 (1147)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhC--CCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECc-----hhh-cccccccC
Confidence 3579999999999999998888764 346888899998876544333 2 2589999994 333 34689999
Q ss_pred eEEEEcCCcccccCCCHHHHHHHHHHcCC
Q 013173 299 RYLALDEADRMLDMGFEPQIRKIVQQMDM 327 (448)
Q Consensus 299 ~~lVlDEah~ll~~gf~~~i~~i~~~l~~ 327 (448)
++||++.+|++ ++ +++..+..+...
T Consensus 881 ~~VIi~~ad~f---gl-aq~~Qr~GRvGR 905 (1147)
T PRK10689 881 NTIIIERADHF---GL-AQLHQLRGRVGR 905 (1147)
T ss_pred CEEEEecCCCC---CH-HHHHHHhhccCC
Confidence 99999999864 22 445555555433
No 329
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=92.94 E-value=0.16 Score=47.02 Aligned_cols=16 Identities=25% Similarity=0.366 Sum_probs=14.3
Q ss_pred CeeEEccCCCCccchh
Q 013173 184 DLMACAQTGSGKTAAF 199 (448)
Q Consensus 184 d~lv~a~TGsGKT~~~ 199 (448)
++++.+|.|+|||..+
T Consensus 52 h~lf~GPPG~GKTTLA 67 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLA 67 (233)
T ss_dssp EEEEESSTTSSHHHHH
T ss_pred eEEEECCCccchhHHH
Confidence 5999999999999854
No 330
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=92.92 E-value=0.27 Score=50.09 Aligned_cols=53 Identities=21% Similarity=0.223 Sum_probs=31.5
Q ss_pred CCCcccCCCCHHHHHHHHHC---CCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchh
Q 013173 144 VNTFAEIDLGEALNLNIRRC---KYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 144 ~~~f~~l~L~~~l~~~l~~~---~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~ 199 (448)
-.+|.+++--+...+.+.+. .+..|.-++..-+ ...+.+++.+|+|+|||+..
T Consensus 141 ~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl---~~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 141 DVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGI---DPPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCC---CCCceEEEECCCCCCHHHHH
Confidence 34688876555455444432 2333333333222 23578999999999999954
No 331
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=92.83 E-value=0.78 Score=45.66 Aligned_cols=33 Identities=24% Similarity=0.164 Sum_probs=23.6
Q ss_pred CHHHHhHHhhHhC--CC---CeeEEccCCCCccchhhh
Q 013173 169 TPVQRHAIPISIG--GR---DLMACAQTGSGKTAAFCF 201 (448)
Q Consensus 169 t~~Q~~~i~~i~~--g~---d~lv~a~TGsGKT~~~~l 201 (448)
.|+|...+..+.. ++ -+++.+|.|+||+.....
T Consensus 3 yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~ 40 (342)
T PRK06964 3 YPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQH 40 (342)
T ss_pred CcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHH
Confidence 5677777765543 32 488999999999987543
No 332
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=92.80 E-value=4.7 Score=42.21 Aligned_cols=137 Identities=15% Similarity=0.170 Sum_probs=91.2
Q ss_pred eEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHH
Q 013173 186 MACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQ 265 (448)
Q Consensus 186 lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~ 265 (448)
+-+-..++||+..-++.+.+.+-.. -.|-+||.+-+.+-|.|++.++.. ..++++.+++|..+..+
T Consensus 361 V~QelvF~gse~~K~lA~rq~v~~g-----------~~PP~lIfVQs~eRak~L~~~L~~---~~~i~v~vIh~e~~~~q 426 (593)
T KOG0344|consen 361 VDQELVFCGSEKGKLLALRQLVASG-----------FKPPVLIFVQSKERAKQLFEELEI---YDNINVDVIHGERSQKQ 426 (593)
T ss_pred hhhhheeeecchhHHHHHHHHHhcc-----------CCCCeEEEEecHHHHHHHHHHhhh---ccCcceeeEecccchhH
Confidence 3344467888888777776655332 346699999999999999999983 35788999999876554
Q ss_pred HHHH---HhcC-ccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEecc
Q 013173 266 QLRE---LERG-VDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSAT 341 (448)
Q Consensus 266 ~~~~---l~~~-~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT 341 (448)
.... ++.| ..|+||| ++|.++ +++..+.+||-++.-.- -...+.+| .......+...-+.+++-+
T Consensus 427 rde~~~~FR~g~IwvLicT-----dll~RG-iDf~gvn~VInyD~p~s----~~syihrI-GRtgRag~~g~Aitfytd~ 495 (593)
T KOG0344|consen 427 RDETMERFRIGKIWVLICT-----DLLARG-IDFKGVNLVINYDFPQS----DLSYIHRI-GRTGRAGRSGKAITFYTDQ 495 (593)
T ss_pred HHHHHHHHhccCeeEEEeh-----hhhhcc-ccccCcceEEecCCCch----hHHHHHHh-hccCCCCCCcceEEEeccc
Confidence 4333 3333 7999999 566666 78999999999766421 12344444 4444444444556666665
Q ss_pred CchHHH
Q 013173 342 FPKEIQ 347 (448)
Q Consensus 342 ~~~~v~ 347 (448)
=-+.+.
T Consensus 496 d~~~ir 501 (593)
T KOG0344|consen 496 DMPRIR 501 (593)
T ss_pred cchhhh
Confidence 433333
No 333
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=92.80 E-value=0.18 Score=53.90 Aligned_cols=31 Identities=32% Similarity=0.392 Sum_probs=25.3
Q ss_pred CCCeeEEEEcCCcccccCCCHHHHHHHHHHc
Q 013173 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQM 325 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l 325 (448)
+++-.++|+|||-.-+|..-+..+.+.+..+
T Consensus 481 l~~~~ILILDEaTSalD~~tE~~I~~~l~~l 511 (567)
T COG1132 481 LRNPPILILDEATSALDTETEALIQDALKKL 511 (567)
T ss_pred hcCCCEEEEeccccccCHHhHHHHHHHHHHH
Confidence 5666899999999999987777787777765
No 334
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=92.78 E-value=0.7 Score=47.00 Aligned_cols=48 Identities=19% Similarity=0.406 Sum_probs=28.6
Q ss_pred CCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHH
Q 013173 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQR 348 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~ 348 (448)
....+++||||||+|... ....+++.+..++ ... ++++.||-+..+..
T Consensus 115 ~~~~kViiIDead~m~~~----aanaLLk~LEep~-~~~-~fIL~a~~~~~llp 162 (394)
T PRK07940 115 TGRWRIVVIEDADRLTER----AANALLKAVEEPP-PRT-VWLLCAPSPEDVLP 162 (394)
T ss_pred cCCcEEEEEechhhcCHH----HHHHHHHHhhcCC-CCC-eEEEEECChHHChH
Confidence 356788999999999652 2344555555543 333 45555554544443
No 335
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=92.78 E-value=1.8 Score=42.80 Aligned_cols=40 Identities=10% Similarity=0.186 Sum_probs=26.6
Q ss_pred CCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEe
Q 013173 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFS 339 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~S 339 (448)
-...+++|||+||.|.. ..-..+++.+..|+ ...-+|+.|
T Consensus 105 ~g~~KV~iI~~a~~m~~----~AaNaLLKtLEEPp-~~~~fiL~t 144 (325)
T PRK06871 105 QGGNKVVYIQGAERLTE----AAANALLKTLEEPR-PNTYFLLQA 144 (325)
T ss_pred cCCceEEEEechhhhCH----HHHHHHHHHhcCCC-CCeEEEEEE
Confidence 35678999999999965 44556677776654 344344443
No 336
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=92.71 E-value=0.37 Score=45.24 Aligned_cols=126 Identities=14% Similarity=0.156 Sum_probs=61.5
Q ss_pred CCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEc---CcHHHHHHHHHHHHHhcccCCcEEEEE
Q 013173 181 GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILA---PTRELSSQIHVEAKKFSYQTGVKVVVA 257 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~---PtreL~~qi~~~~~~~~~~~~~~~~~~ 257 (448)
.|.-+++.|++|+|||...+--+++.+...+ ..+++++ |..+++..+......+. ..- ..
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g------------~~vly~s~E~~~~~~~~r~~~~~~~~~----~~~-~~ 74 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQG------------KPVLFFSLEMSKEQLLQRLLASESGIS----LSK-LR 74 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCC------------CceEEEeCCCCHHHHHHHHHHHhcCCC----HHH-Hh
Confidence 5667899999999999865444444443311 2377776 45555554432211111 000 01
Q ss_pred ECCCCh------HHHHHHHhcCccEEE-----eChHHHHHHHhcccccCCCeeEEEEcCCcccccCC----CHHHHHHHH
Q 013173 258 YGGAPI------NQQLRELERGVDILV-----ATPGRLVDLLERARVSLQMIRYLALDEADRMLDMG----FEPQIRKIV 322 (448)
Q Consensus 258 ~gg~~~------~~~~~~l~~~~~Ilv-----~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~g----f~~~i~~i~ 322 (448)
.+.... ......+.. ..+.| .|+..|...+..... -..+++||||=.+.+.... -...+..++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~l~~~i~~~~~-~~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~ 152 (242)
T cd00984 75 TGSLSDEDWERLAEAIGELKE-LPIYIDDSSSLTVSDIRSRARRLKK-EHGLGLIVIDYLQLMSGSKKKGNRQQEVAEIS 152 (242)
T ss_pred cCCCCHHHHHHHHHHHHHHhc-CCEEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEcCchhcCCCCCCCCHHHHHHHHH
Confidence 111111 011112222 23443 245556655543221 1278999999998764322 123344555
Q ss_pred HHc
Q 013173 323 QQM 325 (448)
Q Consensus 323 ~~l 325 (448)
..|
T Consensus 153 ~~L 155 (242)
T cd00984 153 RSL 155 (242)
T ss_pred HHH
Confidence 444
No 337
>PRK11823 DNA repair protein RadA; Provisional
Probab=92.70 E-value=0.39 Score=49.70 Aligned_cols=53 Identities=19% Similarity=0.237 Sum_probs=34.4
Q ss_pred CCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhc
Q 013173 181 GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFS 247 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~ 247 (448)
.|.-+++.+++|+|||+..+..+.+ +... +.+++++. +.+...|+...+.++.
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~-~a~~------------g~~vlYvs-~Ees~~qi~~ra~rlg 131 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAAR-LAAA------------GGKVLYVS-GEESASQIKLRAERLG 131 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH-HHhc------------CCeEEEEE-ccccHHHHHHHHHHcC
Confidence 3567899999999999964443332 2111 12477776 4566778877777764
No 338
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=92.68 E-value=0.23 Score=50.12 Aligned_cols=91 Identities=13% Similarity=0.180 Sum_probs=50.8
Q ss_pred CCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECC
Q 013173 181 GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGG 260 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg 260 (448)
.|.-+++.+++|+|||...+..+. .+... +.+++++.- .+...|+...+.++.... ....++..
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~-~~a~~------------g~~VlYvs~-EEs~~qi~~Ra~rlg~~~--~~l~l~~e 144 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAA-RLAKR------------GGKVLYVSG-EESPEQIKLRADRLGIST--ENLYLLAE 144 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHH-HHHhc------------CCeEEEEEC-CcCHHHHHHHHHHcCCCc--ccEEEEcc
Confidence 356789999999999996543332 22211 124777754 355667777666654211 11111111
Q ss_pred CChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcccc
Q 013173 261 APINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRML 310 (448)
Q Consensus 261 ~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll 310 (448)
. ..+.+.+.+.. ...++||||+++.+.
T Consensus 145 ~------------------~le~I~~~i~~-----~~~~lVVIDSIq~l~ 171 (372)
T cd01121 145 T------------------NLEDILASIEE-----LKPDLVIIDSIQTVY 171 (372)
T ss_pred C------------------cHHHHHHHHHh-----cCCcEEEEcchHHhh
Confidence 1 12333444432 356889999999875
No 339
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=92.64 E-value=0.13 Score=46.21 Aligned_cols=43 Identities=19% Similarity=0.326 Sum_probs=29.8
Q ss_pred CCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEec
Q 013173 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSA 340 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SA 340 (448)
+...+++++||.+.-++......+..++..+. ....++|+.|-
T Consensus 114 ~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~---~~g~tiIiiSH 156 (178)
T cd03239 114 IKPSPFYVLDEIDAALDPTNRRRVSDMIKEMA---KHTSQFIVITL 156 (178)
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH---hCCCEEEEEEC
Confidence 35668899999999999776677777776652 22355665544
No 340
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=92.61 E-value=0.2 Score=53.58 Aligned_cols=49 Identities=20% Similarity=0.099 Sum_probs=40.4
Q ss_pred CCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013173 183 RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF 246 (448)
Q Consensus 183 ~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~ 246 (448)
+++++.||||||||..|++|-|-.+- ..+||+=|--|+........+++
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~~---------------~S~VV~DpKGEl~~~Ta~~R~~~ 207 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFWE---------------DSVVVHDIKLENYELTSGWREKQ 207 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhCC---------------CCEEEEeCcHHHHHHHHHHHHHC
Confidence 57999999999999999999875431 12899999999998888777774
No 341
>PRK13342 recombination factor protein RarA; Reviewed
Probab=92.59 E-value=0.63 Score=47.72 Aligned_cols=18 Identities=22% Similarity=0.355 Sum_probs=15.1
Q ss_pred CCeeEEccCCCCccchhh
Q 013173 183 RDLMACAQTGSGKTAAFC 200 (448)
Q Consensus 183 ~d~lv~a~TGsGKT~~~~ 200 (448)
..+++.+|+|+|||....
T Consensus 37 ~~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 37 SSMILWGPPGTGKTTLAR 54 (413)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 368999999999998643
No 342
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=92.59 E-value=0.59 Score=51.24 Aligned_cols=18 Identities=28% Similarity=0.326 Sum_probs=15.2
Q ss_pred CCeeEEccCCCCccchhh
Q 013173 183 RDLMACAQTGSGKTAAFC 200 (448)
Q Consensus 183 ~d~lv~a~TGsGKT~~~~ 200 (448)
.++++.+|+|+|||....
T Consensus 53 ~slLL~GPpGtGKTTLA~ 70 (725)
T PRK13341 53 GSLILYGPPGVGKTTLAR 70 (725)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 369999999999998643
No 343
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=92.58 E-value=0.23 Score=54.17 Aligned_cols=69 Identities=17% Similarity=0.092 Sum_probs=50.0
Q ss_pred CCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhc
Q 013173 168 PTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFS 247 (448)
Q Consensus 168 pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~ 247 (448)
+++-|+.++.. ...+++|.|..|||||.+.+-=+. .++.... ....++|+|+.|+..+.++.+.+.+..
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~-~ll~~~~--------~~p~~IL~vTFt~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIA-YLIQNCG--------YKARNIAAVTFTNKAAREMKERVAKTL 70 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHH-HHHHhcC--------CCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 68899998865 356899999999999997544333 3332210 111348999999999999999887754
No 344
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.57 E-value=0.76 Score=48.32 Aligned_cols=43 Identities=21% Similarity=0.339 Sum_probs=26.5
Q ss_pred CCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCc
Q 013173 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFP 343 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~ 343 (448)
+...++|||||+|.|.. ..+..++..+..+++ .. ++++.++-+
T Consensus 114 ~~~~kVVIIDEad~ls~----~a~naLLk~LEep~~-~t-~~Il~t~~~ 156 (504)
T PRK14963 114 RGGRKVYILDEAHMMSK----SAFNALLKTLEEPPE-HV-IFILATTEP 156 (504)
T ss_pred cCCCeEEEEECccccCH----HHHHHHHHHHHhCCC-CE-EEEEEcCCh
Confidence 45678999999998753 455666666655432 23 334444433
No 345
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=92.55 E-value=0.88 Score=40.01 Aligned_cols=53 Identities=21% Similarity=0.283 Sum_probs=38.3
Q ss_pred CCCeeEEEEcCCcccccCCC--HHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHH
Q 013173 295 LQMIRYLALDEADRMLDMGF--EPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLAS 351 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf--~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~ 351 (448)
....++|||||+=..+..++ .+.+..+++.. |...-+|+.+-..|+++.+++.
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~r----p~~~evIlTGr~~p~~l~e~AD 147 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKAK----PEDLELVLTGRNAPKELIEAAD 147 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHcC----CCCCEEEEECCCCCHHHHHhCc
Confidence 46678999999998888775 34555555554 5566677777778888877664
No 346
>PRK08939 primosomal protein DnaI; Reviewed
Probab=92.50 E-value=0.81 Score=44.87 Aligned_cols=26 Identities=19% Similarity=0.290 Sum_probs=18.7
Q ss_pred CCCeeEEccCCCCccchhhhhHHHHHh
Q 013173 182 GRDLMACAQTGSGKTAAFCFPIISGIM 208 (448)
Q Consensus 182 g~d~lv~a~TGsGKT~~~~lpil~~l~ 208 (448)
++.+++.+++|+|||.... .+.+.+.
T Consensus 156 ~~gl~L~G~~G~GKThLa~-Aia~~l~ 181 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLA-AIANELA 181 (306)
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHH
Confidence 4679999999999998543 3333443
No 347
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=92.50 E-value=0.11 Score=55.18 Aligned_cols=125 Identities=17% Similarity=0.180 Sum_probs=70.4
Q ss_pred CCCHHHHhHHhhHhCC--CCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHH-HHH
Q 013173 167 KPTPVQRHAIPISIGG--RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIH-VEA 243 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~~g--~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~-~~~ 243 (448)
.-+|+|.+.+..+... +.|+++.++-+|||.+.+. ++-..+...+ .-+|++.||.++|.+.. +.+
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n-~~g~~i~~~P-----------~~~l~v~Pt~~~a~~~~~~rl 83 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLN-WIGYSIDQDP-----------GPMLYVQPTDDAAKDFSKERL 83 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHh-hceEEEEeCC-----------CCEEEEEEcHHHHHHHHHHHH
Confidence 5789999988887643 5789999999999995433 3333333221 22899999999998875 444
Q ss_pred HHhcccCC-cEEEEEEC----CCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCccccc
Q 013173 244 KKFSYQTG-VKVVVAYG----GAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLD 311 (448)
Q Consensus 244 ~~~~~~~~-~~~~~~~g----g~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~ 311 (448)
..+..... ++- .+.. ........+.+. +-.|.++..+. -..+.-..+++|++||+|.+-.
T Consensus 84 ~Pmi~~sp~l~~-~~~~~~~~~~~~t~~~k~f~-gg~l~~~ga~S------~~~l~s~~~r~~~~DEvD~~p~ 148 (557)
T PF05876_consen 84 DPMIRASPVLRR-KLSPSKSRDSGNTILYKRFP-GGFLYLVGANS------PSNLRSRPARYLLLDEVDRYPD 148 (557)
T ss_pred HHHHHhCHHHHH-HhCchhhcccCCchhheecC-CCEEEEEeCCC------CcccccCCcCEEEEechhhccc
Confidence 44332211 110 1111 000011111222 33343333211 1123346789999999999843
No 348
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=92.49 E-value=0.38 Score=43.37 Aligned_cols=41 Identities=17% Similarity=0.418 Sum_probs=26.6
Q ss_pred CCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEecc
Q 013173 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSAT 341 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT 341 (448)
....+++||||+|.|.. .....++..+..+++ .. +++|.++
T Consensus 94 ~~~~kviiide~~~l~~----~~~~~Ll~~le~~~~-~~-~~il~~~ 134 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNE----AAANALLKTLEEPPP-NT-LFILITP 134 (188)
T ss_pred cCCeEEEEEechhhhCH----HHHHHHHHHhcCCCC-Ce-EEEEEEC
Confidence 46678999999999865 445567777766443 33 3444444
No 349
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=92.49 E-value=2 Score=43.99 Aligned_cols=16 Identities=38% Similarity=0.466 Sum_probs=13.6
Q ss_pred CeeEEccCCCCccchh
Q 013173 184 DLMACAQTGSGKTAAF 199 (448)
Q Consensus 184 d~lv~a~TGsGKT~~~ 199 (448)
-+++++++|+|||+..
T Consensus 102 vi~lvG~~GvGKTTta 117 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTC 117 (429)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999753
No 350
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=92.42 E-value=0.55 Score=45.99 Aligned_cols=48 Identities=17% Similarity=0.353 Sum_probs=27.4
Q ss_pred CCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHH
Q 013173 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQR 348 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~ 348 (448)
....+++||||||.|.. +....++..+..+ +... .++|++.-+..+..
T Consensus 107 ~~~~kviiidead~mt~----~A~nallk~lEep-~~~~-~~il~~n~~~~il~ 154 (325)
T COG0470 107 EGGYKVVIIDEADKLTE----DAANALLKTLEEP-PKNT-RFILITNDPSKILP 154 (325)
T ss_pred CCCceEEEeCcHHHHhH----HHHHHHHHHhccC-CCCe-EEEEEcCChhhccc
Confidence 36789999999999865 3333444444433 3334 44555544444433
No 351
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.39 E-value=1 Score=48.60 Aligned_cols=43 Identities=12% Similarity=0.323 Sum_probs=28.0
Q ss_pred CCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCc
Q 013173 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFP 343 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~ 343 (448)
+..-+++||||||.|.. .....+++.+..++. .. +++|.+|-.
T Consensus 119 ~~~~KVvIIdea~~Ls~----~a~naLLK~LEepp~-~t-ifIL~tt~~ 161 (614)
T PRK14971 119 IGKYKIYIIDEVHMLSQ----AAFNAFLKTLEEPPS-YA-IFILATTEK 161 (614)
T ss_pred cCCcEEEEEECcccCCH----HHHHHHHHHHhCCCC-Ce-EEEEEeCCc
Confidence 46678999999999865 445566666665533 33 455555543
No 352
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=92.32 E-value=0.76 Score=49.00 Aligned_cols=43 Identities=16% Similarity=0.332 Sum_probs=27.2
Q ss_pred CCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCc
Q 013173 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFP 343 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~ 343 (448)
....+++||||+|.|.. .....+++.+..++ ... +++|.+|-+
T Consensus 117 ~~~~KVvIIDEa~~Ls~----~a~naLLK~LEepp-~~~-vfI~~tte~ 159 (563)
T PRK06647 117 SSRYRVYIIDEVHMLSN----SAFNALLKTIEEPP-PYI-VFIFATTEV 159 (563)
T ss_pred cCCCEEEEEEChhhcCH----HHHHHHHHhhccCC-CCE-EEEEecCCh
Confidence 46678999999998865 34556666666543 333 444544543
No 353
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=92.30 E-value=3.5 Score=39.20 Aligned_cols=34 Identities=18% Similarity=0.256 Sum_probs=23.1
Q ss_pred CCCHHHHhHHhhHh----CCC-CeeEEccCCCCccchhh
Q 013173 167 KPTPVQRHAIPISI----GGR-DLMACAQTGSGKTAAFC 200 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~----~g~-d~lv~a~TGsGKT~~~~ 200 (448)
-+++.++.++..+. .+. .+++.+++|+|||+...
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 45566666665442 233 58899999999998643
No 354
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=92.28 E-value=0.5 Score=41.67 Aligned_cols=47 Identities=17% Similarity=0.396 Sum_probs=27.2
Q ss_pred CCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHH
Q 013173 296 QMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQR 348 (448)
Q Consensus 296 ~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~ 348 (448)
...+++||||||.|.. +.-..+++.|..+ +... .++|.++-+..+..
T Consensus 101 ~~~KviiI~~ad~l~~----~a~NaLLK~LEep-p~~~-~fiL~t~~~~~il~ 147 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTE----EAQNALLKTLEEP-PENT-YFILITNNPSKILP 147 (162)
T ss_dssp SSSEEEEEETGGGS-H----HHHHHHHHHHHST-TTTE-EEEEEES-GGGS-H
T ss_pred CCceEEEeehHhhhhH----HHHHHHHHHhcCC-CCCE-EEEEEECChHHChH
Confidence 5689999999999865 3444455555444 3444 45555555544443
No 355
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=92.24 E-value=0.3 Score=53.82 Aligned_cols=72 Identities=17% Similarity=0.134 Sum_probs=52.6
Q ss_pred CCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013173 166 VKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK 245 (448)
Q Consensus 166 ~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~ 245 (448)
..+++-|++++.. ....++|.|..|||||.+.. --+.+++.... ...-++|+|+-|+..|..+.+.+.+
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~-~Ria~Li~~~~--------v~p~~IL~lTFTnkAA~em~~Rl~~ 71 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRVLT-HRIAWLLSVEN--------ASPHSIMAVTFTNKAAAEMRHRIGA 71 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHHHH-HHHHHHHHcCC--------CCHHHeEeeeccHHHHHHHHHHHHH
Confidence 4689999999865 34689999999999999743 33334443210 1112499999999999999999988
Q ss_pred hcc
Q 013173 246 FSY 248 (448)
Q Consensus 246 ~~~ 248 (448)
+..
T Consensus 72 ~~~ 74 (715)
T TIGR01075 72 LLG 74 (715)
T ss_pred Hhc
Confidence 753
No 356
>PHA02244 ATPase-like protein
Probab=92.20 E-value=1 Score=45.02 Aligned_cols=23 Identities=22% Similarity=0.177 Sum_probs=19.0
Q ss_pred hhHhCCCCeeEEccCCCCccchh
Q 013173 177 PISIGGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 177 ~~i~~g~d~lv~a~TGsGKT~~~ 199 (448)
..+..+.++++.+|||+|||...
T Consensus 114 r~l~~~~PVLL~GppGtGKTtLA 136 (383)
T PHA02244 114 KIVNANIPVFLKGGAGSGKNHIA 136 (383)
T ss_pred HHHhcCCCEEEECCCCCCHHHHH
Confidence 34457889999999999999854
No 357
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=92.20 E-value=1.4 Score=39.91 Aligned_cols=54 Identities=20% Similarity=0.340 Sum_probs=37.3
Q ss_pred CCCeeEEEEcCCcccccCCCH--HHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHh
Q 013173 295 LQMIRYLALDEADRMLDMGFE--PQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASD 352 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~--~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~ 352 (448)
-...++|||||+=..++.|+. +++..+++.. |...-+|+.--..|+++.+++..
T Consensus 113 ~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~r----p~~~evVlTGR~~p~~Lie~ADl 168 (191)
T PRK05986 113 DESYDLVVLDELTYALKYGYLDVEEVLEALNAR----PGMQHVVITGRGAPRELIEAADL 168 (191)
T ss_pred CCCCCEEEEehhhHHHHCCCccHHHHHHHHHcC----CCCCEEEEECCCCCHHHHHhCch
Confidence 356788999999999988863 3455555443 55565666666678887776653
No 358
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.19 E-value=0.53 Score=46.88 Aligned_cols=66 Identities=24% Similarity=0.357 Sum_probs=37.2
Q ss_pred eeEEEEcCCcccccC-C----CHH---HHHHHHHHcC---CCCCCCcEEEEEecc-CchHHHHHHHhhhcCcEEEEec
Q 013173 298 IRYLALDEADRMLDM-G----FEP---QIRKIVQQMD---MPPPGMRQTMLFSAT-FPKEIQRLASDFLANYIFLAVG 363 (448)
Q Consensus 298 v~~lVlDEah~ll~~-g----f~~---~i~~i~~~l~---~~~~~~~q~i~~SAT-~~~~v~~l~~~~l~~~~~i~v~ 363 (448)
-+.+.|||+|.|... | .+. .=.+++-+++ ........++.+-|| +|=++.+.++.-+...++|-..
T Consensus 305 PStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~PWdiDEAlrRRlEKRIyIPLP 382 (491)
T KOG0738|consen 305 PSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFPWDIDEALRRRLEKRIYIPLP 382 (491)
T ss_pred CceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCCcchHHHHHHHHhhheeeeCC
Confidence 456999999988642 2 111 1112333332 111223457778888 5777777776666666666543
No 359
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=92.10 E-value=1.5 Score=38.89 Aligned_cols=55 Identities=16% Similarity=0.209 Sum_probs=29.5
Q ss_pred CCeeEEEEcCCcccc-cCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhh
Q 013173 296 QMIRYLALDEADRML-DMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFL 354 (448)
Q Consensus 296 ~~v~~lVlDEah~ll-~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l 354 (448)
...+++|+|....+. +......+..+.... ....-++.++|+...+..+.+..+.
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~----~~~~~~lVv~~~~~~~~~~~~~~~~ 136 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVV----KPDEVLLVVDAMTGQDAVNQAKAFN 136 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhc----CCCeEEEEEECCCChHHHHHHHHHH
Confidence 345678889887652 211223333333322 2344567777776666666665554
No 360
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=92.09 E-value=1.1 Score=47.02 Aligned_cols=92 Identities=18% Similarity=0.183 Sum_probs=55.7
Q ss_pred CCCCHH-HHHHHHHCCCCCCCH----HHHhHHhhHh--CCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCC
Q 013173 150 IDLGEA-LNLNIRRCKYVKPTP----VQRHAIPISI--GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTV 222 (448)
Q Consensus 150 l~L~~~-l~~~l~~~~~~~pt~----~Q~~~i~~i~--~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~ 222 (448)
.++.++ |...|.+.--.++.. +|++==.+|. .++-++|++..|||||++.+-=+--.++..+ +.-..
T Consensus 187 ~~~~dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R------~~l~~ 260 (747)
T COG3973 187 TGGRDEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYR------GPLQA 260 (747)
T ss_pred CchHHHHHHHHHHhccchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhccc------ccccc
Confidence 344444 445666654444443 3444433443 4556999999999999975432211122211 11112
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhcc
Q 013173 223 YPLALILAPTRELSSQIHVEAKKFSY 248 (448)
Q Consensus 223 ~~~~lil~PtreL~~qi~~~~~~~~~ 248 (448)
++ +||+.|.+-+..-+.+++-.++.
T Consensus 261 k~-vlvl~PN~vFleYis~VLPeLGe 285 (747)
T COG3973 261 KP-VLVLGPNRVFLEYISRVLPELGE 285 (747)
T ss_pred Cc-eEEEcCcHHHHHHHHHhchhhcc
Confidence 22 99999999999999999988764
No 361
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=92.08 E-value=0.26 Score=51.85 Aligned_cols=17 Identities=24% Similarity=0.438 Sum_probs=15.0
Q ss_pred CCeeEEccCCCCccchh
Q 013173 183 RDLMACAQTGSGKTAAF 199 (448)
Q Consensus 183 ~d~lv~a~TGsGKT~~~ 199 (448)
+.+++.+|+|+|||+..
T Consensus 89 ~giLL~GppGtGKT~la 105 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLA 105 (495)
T ss_pred CcEEEECCCCCCHHHHH
Confidence 57999999999999853
No 362
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=92.08 E-value=0.69 Score=41.83 Aligned_cols=49 Identities=8% Similarity=0.181 Sum_probs=30.4
Q ss_pred ccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcccccCCCHHHHHHHHHH
Q 013173 274 VDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQ 324 (448)
Q Consensus 274 ~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~ 324 (448)
.-++|-.+..+.+.+......+. +++|.||||+.+-+ ..-.++.++...
T Consensus 60 ~A~~i~~~~~i~~~i~~~~~~~~-~~~v~IDEaQF~~~-~~v~~l~~lad~ 108 (201)
T COG1435 60 EAVVIPSDTDIFDEIAALHEKPP-VDCVLIDEAQFFDE-ELVYVLNELADR 108 (201)
T ss_pred cceecCChHHHHHHHHhcccCCC-cCEEEEehhHhCCH-HHHHHHHHHHhh
Confidence 35777788888888775433222 88999999996533 222334444443
No 363
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=92.02 E-value=0.35 Score=47.24 Aligned_cols=58 Identities=26% Similarity=0.381 Sum_probs=37.0
Q ss_pred CCHHHHhHHhh-HhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHH
Q 013173 168 PTPVQRHAIPI-SIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELS 236 (448)
Q Consensus 168 pt~~Q~~~i~~-i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~ 236 (448)
+++-|...+.. +..+++++++++||||||... -.++..+... ...-+++++-.+.||.
T Consensus 117 ~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll-~al~~~i~~~----------~~~~ri~tiEd~~El~ 175 (299)
T TIGR02782 117 MTAAQRDVLREAVLARKNILVVGGTGSGKTTLA-NALLAEIAKN----------DPTDRVVIIEDTRELQ 175 (299)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHhhcc----------CCCceEEEECCchhhc
Confidence 55556665554 446789999999999999953 2233333221 1123588888888874
No 364
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=91.98 E-value=1.4 Score=46.56 Aligned_cols=40 Identities=13% Similarity=0.378 Sum_probs=26.0
Q ss_pred CCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEe
Q 013173 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFS 339 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~S 339 (448)
....+++||||||+|.. .....+++.+..+ +....+|+++
T Consensus 115 ~~~~KVvIIDEad~Lt~----~A~NALLK~LEEp-p~~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLTK----EAFNALLKTLEEP-PSYVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCCH----HHHHHHHHHHhhc-CCceEEEEEE
Confidence 46678999999998865 3444555555554 4455555544
No 365
>PRK04195 replication factor C large subunit; Provisional
Probab=91.98 E-value=0.49 Score=49.58 Aligned_cols=18 Identities=28% Similarity=0.414 Sum_probs=15.6
Q ss_pred CCCeeEEccCCCCccchh
Q 013173 182 GRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 182 g~d~lv~a~TGsGKT~~~ 199 (448)
.+.+++.+|+|+|||...
T Consensus 39 ~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLA 56 (482)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467999999999999854
No 366
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=91.86 E-value=1.3 Score=42.91 Aligned_cols=36 Identities=22% Similarity=0.234 Sum_probs=27.2
Q ss_pred CCcEEEEeC------chhhHHHHHHHHHHCCCCeEEecCCCCH
Q 013173 404 QALTLVFVE------TKKGADALEHWLYMNGFPATTIHGDRTQ 440 (448)
Q Consensus 404 ~~~tlVF~~------t~~~a~~l~~~L~~~g~~~~~iHg~~~q 440 (448)
..-+|-|.= |+--|+.|++.| ..++.+...|-++..
T Consensus 244 ~~~~i~igCtGG~HRSV~~~e~l~~~l-~~~~~v~~~Hrd~~~ 285 (288)
T PRK05416 244 SYLTIAIGCTGGQHRSVAIAERLAERL-SKGYNVQVRHRDLER 285 (288)
T ss_pred CEEEEEEecCCCcccHHHHHHHHHHHH-hCCCcEEEEeCcccc
Confidence 344555543 477899999999 468999999999864
No 367
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=91.85 E-value=0.28 Score=54.03 Aligned_cols=72 Identities=17% Similarity=0.152 Sum_probs=52.0
Q ss_pred CCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013173 166 VKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK 245 (448)
Q Consensus 166 ~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~ 245 (448)
..++|-|++++.. ....++|.|..|||||.+..- -+.+++.... ...-.+|+|+-|+..|..+.+.+.+
T Consensus 8 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~vl~~-Ria~Li~~~~--------v~p~~IL~lTFT~kAA~Em~~Rl~~ 76 (721)
T PRK11773 8 DSLNDKQREAVAA--PLGNMLVLAGAGSGKTRVLVH-RIAWLMQVEN--------ASPYSIMAVTFTNKAAAEMRHRIEQ 76 (721)
T ss_pred HhcCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHH-HHHHHHHcCC--------CChhHeEeeeccHHHHHHHHHHHHH
Confidence 3589999999865 346899999999999987433 3333443210 1112499999999999999999988
Q ss_pred hcc
Q 013173 246 FSY 248 (448)
Q Consensus 246 ~~~ 248 (448)
+..
T Consensus 77 ~~~ 79 (721)
T PRK11773 77 LLG 79 (721)
T ss_pred Hhc
Confidence 653
No 368
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=91.82 E-value=0.65 Score=49.50 Aligned_cols=45 Identities=18% Similarity=0.315 Sum_probs=26.0
Q ss_pred CCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHH
Q 013173 296 QMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEI 346 (448)
Q Consensus 296 ~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v 346 (448)
..-+++||||||.|.. .....++..+..++ ... +++|.+|-+..+
T Consensus 118 ~~~KVIIIDEad~Lt~----~A~NaLLKtLEEPp-~~t-vfIL~Tt~~~KL 162 (605)
T PRK05896 118 FKYKVYIIDEAHMLST----SAWNALLKTLEEPP-KHV-VFIFATTEFQKI 162 (605)
T ss_pred CCcEEEEEechHhCCH----HHHHHHHHHHHhCC-CcE-EEEEECCChHhh
Confidence 3467899999998854 33445555555443 333 444444544333
No 369
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=91.81 E-value=2.6 Score=45.70 Aligned_cols=92 Identities=20% Similarity=0.233 Sum_probs=61.0
Q ss_pred CceEEEEcCcHH--------HHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHH---hc-CccEEEeChHHHHHHHhc
Q 013173 223 YPLALILAPTRE--------LSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLREL---ER-GVDILVATPGRLVDLLER 290 (448)
Q Consensus 223 ~~~~lil~Ptre--------L~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~~-~~~Ilv~Tp~~l~~~l~~ 290 (448)
+.+++|+||+.+ -+.++++.+.... .++++..++|+.+..+....+ .. ..+|||||. .+ .
T Consensus 448 g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~--~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~-----vi-e 519 (630)
T TIGR00643 448 GRQAYVVYPLIEESEKLDLKAAEALYERLKKAF--PKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATT-----VI-E 519 (630)
T ss_pred CCcEEEEEccccccccchHHHHHHHHHHHHhhC--CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECc-----ee-e
Confidence 346999999864 3445555555432 467899999998866554333 33 489999995 22 3
Q ss_pred ccccCCCeeEEEEcCCcccccCCCHHHHHHHHHHcC
Q 013173 291 ARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMD 326 (448)
Q Consensus 291 ~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~ 326 (448)
..+++.+++++|+..+++.. ..++.....+..
T Consensus 520 ~GvDiP~v~~VIi~~~~r~g----ls~lhQ~~GRvG 551 (630)
T TIGR00643 520 VGVDVPNATVMVIEDAERFG----LSQLHQLRGRVG 551 (630)
T ss_pred cCcccCCCcEEEEeCCCcCC----HHHHHHHhhhcc
Confidence 45789999999999888642 234554444443
No 370
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=91.64 E-value=0.78 Score=45.19 Aligned_cols=22 Identities=23% Similarity=0.228 Sum_probs=18.4
Q ss_pred hHhCCCCeeEEccCCCCccchh
Q 013173 178 ISIGGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 178 ~i~~g~d~lv~a~TGsGKT~~~ 199 (448)
.+..++++++.+++|+|||...
T Consensus 60 ~l~~~~~ilL~G~pGtGKTtla 81 (327)
T TIGR01650 60 GFAYDRRVMVQGYHGTGKSTHI 81 (327)
T ss_pred HHhcCCcEEEEeCCCChHHHHH
Confidence 3456889999999999999853
No 371
>PTZ00146 fibrillarin; Provisional
Probab=91.54 E-value=0.4 Score=46.40 Aligned_cols=33 Identities=18% Similarity=0.303 Sum_probs=21.6
Q ss_pred CCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchh
Q 013173 164 KYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 164 ~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~ 199 (448)
.|-.-.|++.+.--.|+.+-+.+-. .-|.++.+
T Consensus 106 eyR~w~p~rSKlaa~i~~g~~~l~I---kpG~~VLD 138 (293)
T PTZ00146 106 EYRVWNPFRSKLAAAIIGGVANIPI---KPGSKVLY 138 (293)
T ss_pred eeeeeCCcccHHHHHHHCCcceecc---CCCCEEEE
Confidence 3566788888888888888776522 33455543
No 372
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=91.53 E-value=1.7 Score=41.82 Aligned_cols=38 Identities=24% Similarity=0.238 Sum_probs=30.0
Q ss_pred CCCcEEEEeC------chhhHHHHHHHHHHCCCCeEEecCCCCH
Q 013173 403 KQALTLVFVE------TKKGADALEHWLYMNGFPATTIHGDRTQ 440 (448)
Q Consensus 403 ~~~~tlVF~~------t~~~a~~l~~~L~~~g~~~~~iHg~~~q 440 (448)
+..-||-+.= |+-.|+.|++.|...+..+...|-|+..
T Consensus 240 k~~ltIaiGCTGG~HRSV~iae~La~~L~~~~~~v~v~HRdl~k 283 (284)
T PF03668_consen 240 KSYLTIAIGCTGGQHRSVAIAERLAERLREKGYTVVVRHRDLEK 283 (284)
T ss_pred CceEEEEEEcCCCcCcHHHHHHHHHHHHHhcCCcceEEcCCCCC
Confidence 3444565543 4788999999999999999999998864
No 373
>CHL00176 ftsH cell division protein; Validated
Probab=91.51 E-value=1 Score=48.74 Aligned_cols=18 Identities=22% Similarity=0.385 Sum_probs=15.4
Q ss_pred CCCeeEEccCCCCccchh
Q 013173 182 GRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 182 g~d~lv~a~TGsGKT~~~ 199 (448)
-+.+++.+|+|+|||+..
T Consensus 216 p~gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLA 233 (638)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 357999999999999854
No 374
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=91.49 E-value=0.95 Score=45.36 Aligned_cols=19 Identities=21% Similarity=0.385 Sum_probs=15.8
Q ss_pred CCeeEEccCCCCccchhhh
Q 013173 183 RDLMACAQTGSGKTAAFCF 201 (448)
Q Consensus 183 ~d~lv~a~TGsGKT~~~~l 201 (448)
.++|+-+|.|+|||..+.+
T Consensus 49 ~SmIl~GPPG~GKTTlA~l 67 (436)
T COG2256 49 HSMILWGPPGTGKTTLARL 67 (436)
T ss_pred ceeEEECCCCCCHHHHHHH
Confidence 3689999999999996543
No 375
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=91.47 E-value=1.6 Score=44.92 Aligned_cols=17 Identities=29% Similarity=0.401 Sum_probs=14.5
Q ss_pred CeeEEccCCCCccchhh
Q 013173 184 DLMACAQTGSGKTAAFC 200 (448)
Q Consensus 184 d~lv~a~TGsGKT~~~~ 200 (448)
-+++++++|+|||+...
T Consensus 101 vi~~vG~~GsGKTTtaa 117 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCG 117 (428)
T ss_pred EEEEECCCCCcHHHHHH
Confidence 48899999999998643
No 376
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=91.35 E-value=0.44 Score=53.81 Aligned_cols=153 Identities=18% Similarity=0.122 Sum_probs=87.8
Q ss_pred CCCCeeEEccCCCCccchhhhhHHHHHhhhhccc-----CCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEE
Q 013173 181 GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQ-----RPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVV 255 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~-----~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~ 255 (448)
.|++++..-..|+|||.+-+.-.+....+..... ...........+|||+|.--| .|.++++.+-+.. .+++.
T Consensus 373 ~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~aIl-~QW~~EI~kH~~~-~lKv~ 450 (1394)
T KOG0298|consen 373 HGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPNAIL-MQWFEEIHKHISS-LLKVL 450 (1394)
T ss_pred CCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcHHHH-HHHHHHHHHhccc-cceEE
Confidence 3567788888999999987665554422211100 001122233458999997655 6888888876543 36776
Q ss_pred EEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcc--------------ccc----CCCeeE--EEEcCCcccccCCCH
Q 013173 256 VAYGGAPINQQLRELERGVDILVATPGRLVDLLERA--------------RVS----LQMIRY--LALDEADRMLDMGFE 315 (448)
Q Consensus 256 ~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~--------------~~~----l~~v~~--lVlDEah~ll~~gf~ 315 (448)
...|=..........-..+|||++|...|..-+... ..+ |-.|.+ ++||||.++-. -.
T Consensus 451 ~Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves--ss 528 (1394)
T KOG0298|consen 451 LYFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES--SS 528 (1394)
T ss_pred EEechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc--hH
Confidence 655532221111122224899999999997655322 111 222333 69999996533 23
Q ss_pred HHHHHHHHHcCCCCCCCcEEEEEeccC
Q 013173 316 PQIRKIVQQMDMPPPGMRQTMLFSATF 342 (448)
Q Consensus 316 ~~i~~i~~~l~~~~~~~~q~i~~SAT~ 342 (448)
.+..+.+..| + ..-.-++|.|.
T Consensus 529 S~~a~M~~rL----~-~in~W~VTGTP 550 (1394)
T KOG0298|consen 529 SAAAEMVRRL----H-AINRWCVTGTP 550 (1394)
T ss_pred HHHHHHHHHh----h-hhceeeecCCc
Confidence 4555555555 1 22367888884
No 377
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.31 E-value=1 Score=47.11 Aligned_cols=41 Identities=17% Similarity=0.404 Sum_probs=25.1
Q ss_pred CCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEecc
Q 013173 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSAT 341 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT 341 (448)
...-+++||||||.|.. .....++..+..+++ .. +++|.+|
T Consensus 117 ~~~~KVvIIDEad~Lt~----~a~naLLk~LEepp~-~~-v~Il~tt 157 (486)
T PRK14953 117 KGKYKVYIIDEAHMLTK----EAFNALLKTLEEPPP-RT-IFILCTT 157 (486)
T ss_pred cCCeeEEEEEChhhcCH----HHHHHHHHHHhcCCC-Ce-EEEEEEC
Confidence 45678999999998865 334455666655433 33 4444444
No 378
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=91.30 E-value=0.79 Score=47.10 Aligned_cols=26 Identities=19% Similarity=0.111 Sum_probs=18.9
Q ss_pred hCCCCeeEEccCCCCccchhhhhHHH
Q 013173 180 IGGRDLMACAQTGSGKTAAFCFPIIS 205 (448)
Q Consensus 180 ~~g~d~lv~a~TGsGKT~~~~lpil~ 205 (448)
..|.=+++.|++|+|||...+--+.+
T Consensus 192 ~~g~liviag~pg~GKT~~al~ia~~ 217 (421)
T TIGR03600 192 VKGDLIVIGARPSMGKTTLALNIAEN 217 (421)
T ss_pred CCCceEEEEeCCCCCHHHHHHHHHHH
Confidence 34566889999999999865544433
No 379
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=91.26 E-value=1.4 Score=49.31 Aligned_cols=98 Identities=10% Similarity=0.134 Sum_probs=64.9
Q ss_pred EEEEeccCchHHHHHHHhhhcCcEEEEecccccccCcee---EEEEEecccchHHHHHHHHHHHHhcCCCCCCCcEEEEe
Q 013173 335 TMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIV---QRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFV 411 (448)
Q Consensus 335 ~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~---q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~ 411 (448)
+-+||.|...+-.++..-|--+-+.|-. ..+.+. ...++....+|..++.+.+..... .+.|+||-|
T Consensus 566 LsGMTGTA~tea~Ef~~IY~L~Vv~IPT-----nrP~~R~D~~D~vy~t~~eK~~Aii~ei~~~~~-----~GrPVLVGT 635 (1112)
T PRK12901 566 LAGMTGTAETEAGEFWDIYKLDVVVIPT-----NRPIARKDKEDLVYKTKREKYNAVIEEITELSE-----AGRPVLVGT 635 (1112)
T ss_pred hcccCCCCHHHHHHHHHHhCCCEEECCC-----CCCcceecCCCeEecCHHHHHHHHHHHHHHHHH-----CCCCEEEEe
Confidence 5678888866655554443323222211 111111 123445667788888877776543 388999999
Q ss_pred CchhhHHHHHHHHHHCCCCeEEecCCCCHHH
Q 013173 412 ETKKGADALEHWLYMNGFPATTIHGDRTQQR 442 (448)
Q Consensus 412 ~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~e 442 (448)
.|++..+.|+.+|...|++...++...-++|
T Consensus 636 ~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~E 666 (1112)
T PRK12901 636 TSVEISELLSRMLKMRKIPHNVLNAKLHQKE 666 (1112)
T ss_pred CcHHHHHHHHHHHHHcCCcHHHhhccchhhH
Confidence 9999999999999999999888877644333
No 380
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=91.20 E-value=0.4 Score=48.31 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=17.9
Q ss_pred CCCeeEEccCCCCccchhhhhHHHHH
Q 013173 182 GRDLMACAQTGSGKTAAFCFPIISGI 207 (448)
Q Consensus 182 g~d~lv~a~TGsGKT~~~~lpil~~l 207 (448)
...++++++||||||+.. -.+++.+
T Consensus 149 ~GlilI~G~TGSGKTT~l-~al~~~i 173 (372)
T TIGR02525 149 AGLGLICGETGSGKSTLA-ASIYQHC 173 (372)
T ss_pred CCEEEEECCCCCCHHHHH-HHHHHHH
Confidence 346899999999999853 3344444
No 381
>PRK06904 replicative DNA helicase; Validated
Probab=91.19 E-value=1.2 Score=46.36 Aligned_cols=149 Identities=13% Similarity=0.099 Sum_probs=69.7
Q ss_pred CCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEE-EC-
Q 013173 182 GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVA-YG- 259 (448)
Q Consensus 182 g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~-~g- 259 (448)
|.=+++.|.+|+|||...+-.+.+.....+ -.++|++ .-.-..|+...+-... .++....+ .|
T Consensus 221 G~LiiIaarPg~GKTafalnia~~~a~~~g------------~~Vl~fS-lEMs~~ql~~Rlla~~--s~v~~~~i~~g~ 285 (472)
T PRK06904 221 SDLIIVAARPSMGKTTFAMNLCENAAMASE------------KPVLVFS-LEMPAEQIMMRMLASL--SRVDQTKIRTGQ 285 (472)
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHhcC------------CeEEEEe-ccCCHHHHHHHHHHhh--CCCCHHHhccCC
Confidence 444778999999999954333332222211 1255554 2233444444433221 12222112 22
Q ss_pred CCChHHH------HHHHhcCccEEE-----eChHHHHHHHhcccccCCCeeEEEEcCCcccccCC----CHHHHHHHHHH
Q 013173 260 GAPINQQ------LRELERGVDILV-----ATPGRLVDLLERARVSLQMIRYLALDEADRMLDMG----FEPQIRKIVQQ 324 (448)
Q Consensus 260 g~~~~~~------~~~l~~~~~Ilv-----~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~g----f~~~i~~i~~~ 324 (448)
..+..++ ...+....++.| .|+..+...+.+.......+++||||-.+.|...+ ...++..|...
T Consensus 286 ~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~ 365 (472)
T PRK06904 286 NLDQQDWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMRAPGFEDNRTLEIAEISRS 365 (472)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCCCCCCCcHHHHHHHHHHH
Confidence 1222221 122323344655 24555544443322122358899999998775333 23345555555
Q ss_pred cCCCC-CCCcEEEEEeccCchHH
Q 013173 325 MDMPP-PGMRQTMLFSATFPKEI 346 (448)
Q Consensus 325 l~~~~-~~~~q~i~~SAT~~~~v 346 (448)
|+... ..++.+|++|. ++..+
T Consensus 366 LK~lAkel~ipVi~lsQ-LnR~~ 387 (472)
T PRK06904 366 LKALAKELKVPVVALSQ-LNRTL 387 (472)
T ss_pred HHHHHHHhCCeEEEEEe-cCchh
Confidence 42221 12455777664 55444
No 382
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=91.14 E-value=0.4 Score=52.23 Aligned_cols=44 Identities=20% Similarity=0.291 Sum_probs=36.3
Q ss_pred CCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCc
Q 013173 296 QMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFP 343 (448)
Q Consensus 296 ~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~ 343 (448)
..--|||||+.|++.+.-.-..++.++++. |.+.+.++.|=+-|
T Consensus 128 ~~pl~LVlDDyHli~~~~l~~~l~fLl~~~----P~~l~lvv~SR~rP 171 (894)
T COG2909 128 EGPLYLVLDDYHLISDPALHEALRFLLKHA----PENLTLVVTSRSRP 171 (894)
T ss_pred cCceEEEeccccccCcccHHHHHHHHHHhC----CCCeEEEEEeccCC
Confidence 334689999999999887778899999998 88888888887643
No 383
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=91.11 E-value=0.89 Score=50.15 Aligned_cols=19 Identities=26% Similarity=0.328 Sum_probs=16.3
Q ss_pred CCCeeEEccCCCCccchhh
Q 013173 182 GRDLMACAQTGSGKTAAFC 200 (448)
Q Consensus 182 g~d~lv~a~TGsGKT~~~~ 200 (448)
..++++.+++|+|||....
T Consensus 207 ~~n~LLvGppGvGKT~lae 225 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAE 225 (758)
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 4689999999999999753
No 384
>PRK10436 hypothetical protein; Provisional
Probab=91.11 E-value=0.57 Score=48.61 Aligned_cols=25 Identities=24% Similarity=0.470 Sum_probs=18.1
Q ss_pred CCCeeEEccCCCCccchhhhhHHHHH
Q 013173 182 GRDLMACAQTGSGKTAAFCFPIISGI 207 (448)
Q Consensus 182 g~d~lv~a~TGsGKT~~~~lpil~~l 207 (448)
+--+++++|||||||+.. -.+|..+
T Consensus 218 ~GliLvtGpTGSGKTTtL-~a~l~~~ 242 (462)
T PRK10436 218 QGLILVTGPTGSGKTVTL-YSALQTL 242 (462)
T ss_pred CCeEEEECCCCCChHHHH-HHHHHhh
Confidence 345899999999999963 2345444
No 385
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=91.09 E-value=0.87 Score=50.64 Aligned_cols=18 Identities=33% Similarity=0.313 Sum_probs=15.2
Q ss_pred CCCeeEEccCCCCccchh
Q 013173 182 GRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 182 g~d~lv~a~TGsGKT~~~ 199 (448)
+..+++.+|+|+|||...
T Consensus 347 ~~~lll~GppG~GKT~lA 364 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLG 364 (775)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 456999999999999854
No 386
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=91.08 E-value=0.85 Score=47.01 Aligned_cols=70 Identities=24% Similarity=0.297 Sum_probs=54.4
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHH---hc-CccEEEeChHHHHHHHhcccccCCCe
Q 013173 223 YPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLREL---ER-GVDILVATPGRLVDLLERARVSLQMI 298 (448)
Q Consensus 223 ~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~~-~~~Ilv~Tp~~l~~~l~~~~~~l~~v 298 (448)
.|.+||.+.++.=|..+++.+.+. +++++.++||....+....| .. ..+|+|||- .-...++..+|
T Consensus 517 ~ppiIIFvN~kk~~d~lAk~LeK~----g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTD------vAgRGIDIpnV 586 (673)
T KOG0333|consen 517 DPPIIIFVNTKKGADALAKILEKA----GYKVTTLHGGKSQEQRENALADFREGTGDILVATD------VAGRGIDIPNV 586 (673)
T ss_pred CCCEEEEEechhhHHHHHHHHhhc----cceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEec------ccccCCCCCcc
Confidence 466999999999999999999885 58999999998876654444 33 479999993 22235688899
Q ss_pred eEEE
Q 013173 299 RYLA 302 (448)
Q Consensus 299 ~~lV 302 (448)
++||
T Consensus 587 SlVi 590 (673)
T KOG0333|consen 587 SLVI 590 (673)
T ss_pred ceee
Confidence 8876
No 387
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=91.02 E-value=0.75 Score=43.82 Aligned_cols=142 Identities=13% Similarity=0.094 Sum_probs=73.4
Q ss_pred CCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEc---CcHHHHHHHHHHHHHhcccCCcEEEEEE
Q 013173 182 GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILA---PTRELSSQIHVEAKKFSYQTGVKVVVAY 258 (448)
Q Consensus 182 g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~---PtreL~~qi~~~~~~~~~~~~~~~~~~~ 258 (448)
|.=+++.|.||.|||+..+--+++.+...+ ..+++++ +..+++..+....... ....+.
T Consensus 19 g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~------------~~vly~SlEm~~~~l~~R~la~~s~v------~~~~i~ 80 (259)
T PF03796_consen 19 GELTVIAARPGVGKTAFALQIALNAALNGG------------YPVLYFSLEMSEEELAARLLARLSGV------PYNKIR 80 (259)
T ss_dssp T-EEEEEESTTSSHHHHHHHHHHHHHHTTS------------SEEEEEESSS-HHHHHHHHHHHHHTS------THHHHH
T ss_pred CcEEEEEecccCCchHHHHHHHHHHHHhcC------------CeEEEEcCCCCHHHHHHHHHHHhhcc------hhhhhh
Confidence 445889999999999976665555554321 2377776 3455554444433332 111111
Q ss_pred CCCChHHHHH-------HHhcCccEEEeC----hHHHHHHHhcccccCCCeeEEEEcCCcccccC----CCHHHHHHHHH
Q 013173 259 GGAPINQQLR-------ELERGVDILVAT----PGRLVDLLERARVSLQMIRYLALDEADRMLDM----GFEPQIRKIVQ 323 (448)
Q Consensus 259 gg~~~~~~~~-------~l~~~~~Ilv~T----p~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~----gf~~~i~~i~~ 323 (448)
.+.....+.. .+.+..-++..+ +..|.+.+...+.....+++||||=+|.|-.. +....+..+..
T Consensus 81 ~g~l~~~e~~~~~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~ 160 (259)
T PF03796_consen 81 SGDLSDEEFERLQAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSEDSSDNRRQEIGEISR 160 (259)
T ss_dssp CCGCHHHHHHHHHHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCCCCCCCHHHHHHHHHH
Confidence 2222222222 233332233344 44555555544434478999999999988653 34455555544
Q ss_pred HcCCCC-CCCcEEEEEecc
Q 013173 324 QMDMPP-PGMRQTMLFSAT 341 (448)
Q Consensus 324 ~l~~~~-~~~~q~i~~SAT 341 (448)
.|+... ..++.++++|..
T Consensus 161 ~Lk~lA~~~~i~vi~~sQl 179 (259)
T PF03796_consen 161 ELKALAKELNIPVIALSQL 179 (259)
T ss_dssp HHHHHHHHHTSEEEEEEEB
T ss_pred HHHHHHHHcCCeEEEcccc
Confidence 441110 123556666654
No 388
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=90.99 E-value=2.8 Score=41.97 Aligned_cols=44 Identities=23% Similarity=0.268 Sum_probs=26.3
Q ss_pred CCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCch
Q 013173 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPK 344 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~ 344 (448)
....+++||||||.|.. .....+++.+..+ +....+|++| +-+.
T Consensus 139 ~g~~rVviIDeAd~l~~----~aanaLLk~LEEp-p~~~~fiLit-~~~~ 182 (351)
T PRK09112 139 DGNWRIVIIDPADDMNR----NAANAILKTLEEP-PARALFILIS-HSSG 182 (351)
T ss_pred cCCceEEEEEchhhcCH----HHHHHHHHHHhcC-CCCceEEEEE-CChh
Confidence 35678999999998854 3344455555554 3344444444 4343
No 389
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=90.97 E-value=0.36 Score=52.31 Aligned_cols=50 Identities=18% Similarity=0.136 Sum_probs=39.0
Q ss_pred CCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013173 182 GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF 246 (448)
Q Consensus 182 g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~ 246 (448)
.++++++|+||||||..|++|-|-.+- ..+||+=|--|+........++.
T Consensus 139 ~~hvlviApTgSGKgvg~VIPnLL~~~---------------gS~VV~DpKGE~~~~Ta~~R~~~ 188 (670)
T PRK13850 139 QPHSLVVAPTRAGKGVGVVIPTLLTFK---------------GSVIALDVKGELFELTSRARKAS 188 (670)
T ss_pred CceEEEEecCCCCceeeehHhHHhcCC---------------CCEEEEeCCchHHHHHHHHHHhC
Confidence 358999999999999999999764321 12888889999988776666553
No 390
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=90.95 E-value=1.5 Score=46.98 Aligned_cols=73 Identities=18% Similarity=0.334 Sum_probs=55.5
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHH---hc-CccEEEeChHHHHHHHhcccccCCCee
Q 013173 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLREL---ER-GVDILVATPGRLVDLLERARVSLQMIR 299 (448)
Q Consensus 224 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~~-~~~Ilv~Tp~~l~~~l~~~~~~l~~v~ 299 (448)
.++||.|+|++.|.++++.+.+. ++++..++++.+..+....+ .. ..+|||||. .+. ..+++.+|+
T Consensus 258 ~k~LVF~nt~~~ae~l~~~L~~~----g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTd-----v~a-rGIDip~V~ 327 (572)
T PRK04537 258 ARTMVFVNTKAFVERVARTLERH----GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATD-----VAA-RGLHIDGVK 327 (572)
T ss_pred CcEEEEeCCHHHHHHHHHHHHHc----CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEeh-----hhh-cCCCccCCC
Confidence 45999999999999999988774 57899999998876554433 33 479999993 344 346889999
Q ss_pred EEEEcCC
Q 013173 300 YLALDEA 306 (448)
Q Consensus 300 ~lVlDEa 306 (448)
+||.-++
T Consensus 328 ~VInyd~ 334 (572)
T PRK04537 328 YVYNYDL 334 (572)
T ss_pred EEEEcCC
Confidence 9886544
No 391
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=90.90 E-value=0.19 Score=50.39 Aligned_cols=18 Identities=28% Similarity=0.331 Sum_probs=15.8
Q ss_pred CCCCeeEEccCCCCccch
Q 013173 181 GGRDLMACAQTGSGKTAA 198 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~ 198 (448)
.+.-+++++|||||||+.
T Consensus 133 ~~glilI~GpTGSGKTTt 150 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTL 150 (358)
T ss_pred cCCEEEEECCCCCCHHHH
Confidence 456799999999999985
No 392
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=90.84 E-value=0.68 Score=46.84 Aligned_cols=19 Identities=26% Similarity=0.235 Sum_probs=17.0
Q ss_pred hCCCCeeEEccCCCCccch
Q 013173 180 IGGRDLMACAQTGSGKTAA 198 (448)
Q Consensus 180 ~~g~d~lv~a~TGsGKT~~ 198 (448)
-.|+-+++.+++|+|||..
T Consensus 166 g~Gq~~~IvG~~g~GKTtL 184 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVL 184 (415)
T ss_pred CCCCEEEEECCCCCChhHH
Confidence 3789999999999999985
No 393
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=90.82 E-value=4.1 Score=40.92 Aligned_cols=110 Identities=16% Similarity=0.177 Sum_probs=61.8
Q ss_pred CCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCC
Q 013173 182 GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGA 261 (448)
Q Consensus 182 g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~ 261 (448)
.+-+.+.++.|+|||... +.++..-+.. .+.+ ++--+...+++..+.++. ++.
T Consensus 62 ~~GlYl~G~vG~GKT~Lm-----d~f~~~lp~~-------~k~R----~HFh~Fm~~vh~~l~~~~-----------~~~ 114 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTMLM-----DLFYDSLPIK-------RKRR----VHFHEFMLDVHSRLHQLR-----------GQD 114 (362)
T ss_pred CceEEEECCCCCchhHHH-----HHHHHhCCcc-------cccc----ccccHHHHHHHHHHHHHh-----------CCC
Confidence 467999999999999842 2222211100 0001 244577888888888853 111
Q ss_pred C-hHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEec
Q 013173 262 P-INQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSA 340 (448)
Q Consensus 262 ~-~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SA 340 (448)
. +..- .+.+ .+...+|+|||.|. -|.+=.-.+..++..+- ....-+|+.|-
T Consensus 115 ~~l~~v------------------a~~l------~~~~~lLcfDEF~V-~DiaDAmil~rLf~~l~---~~gvvlVaTSN 166 (362)
T PF03969_consen 115 DPLPQV------------------ADEL------AKESRLLCFDEFQV-TDIADAMILKRLFEALF---KRGVVLVATSN 166 (362)
T ss_pred ccHHHH------------------HHHH------HhcCCEEEEeeeec-cchhHHHHHHHHHHHHH---HCCCEEEecCC
Confidence 1 1111 1111 34456799999994 34333344556666652 34456777777
Q ss_pred cCchHH
Q 013173 341 TFPKEI 346 (448)
Q Consensus 341 T~~~~v 346 (448)
+.|.++
T Consensus 167 ~~P~~L 172 (362)
T PF03969_consen 167 RPPEDL 172 (362)
T ss_pred CChHHH
Confidence 777664
No 394
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=90.80 E-value=0.61 Score=48.91 Aligned_cols=52 Identities=17% Similarity=0.280 Sum_probs=29.6
Q ss_pred CCcccCC-CCHHHHHHHHH--CCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchh
Q 013173 145 NTFAEID-LGEALNLNIRR--CKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 145 ~~f~~l~-L~~~l~~~l~~--~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~ 199 (448)
.+|++++ |++.+.+.... ..+..|.-+..+-++ ..+.+++.+|+|+|||+..
T Consensus 179 v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~---~p~GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 179 VTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLK---PPKGVLLYGPPGCGKTLIA 233 (512)
T ss_pred CCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCC---CCcceEEECCCCCcHHHHH
Confidence 4677775 55544333222 123333333333332 2467999999999999853
No 395
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=90.63 E-value=2.3 Score=44.16 Aligned_cols=37 Identities=14% Similarity=0.335 Sum_probs=23.9
Q ss_pred CCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEE
Q 013173 296 QMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTML 337 (448)
Q Consensus 296 ~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~ 337 (448)
..-+++||||+|.|.. .....+++.+..++ ....+|+
T Consensus 120 ~~~kvvIIdead~lt~----~~~n~LLk~lEep~-~~~~~Il 156 (451)
T PRK06305 120 SRYKIYIIDEVHMLTK----EAFNSLLKTLEEPP-QHVKFFL 156 (451)
T ss_pred CCCEEEEEecHHhhCH----HHHHHHHHHhhcCC-CCceEEE
Confidence 5568899999998864 34455666666543 3443443
No 396
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=90.58 E-value=0.28 Score=48.81 Aligned_cols=45 Identities=31% Similarity=0.394 Sum_probs=30.1
Q ss_pred hHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHH
Q 013173 178 ISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELS 236 (448)
Q Consensus 178 ~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~ 236 (448)
.+..+++++++++||||||+.. -.++..+- ...+++.+-.+.||.
T Consensus 158 ~v~~~~nilI~G~tGSGKTTll-~aLl~~i~-------------~~~rivtiEd~~El~ 202 (344)
T PRK13851 158 CVVGRLTMLLCGPTGSGKTTMS-KTLISAIP-------------PQERLITIEDTLELV 202 (344)
T ss_pred HHHcCCeEEEECCCCccHHHHH-HHHHcccC-------------CCCCEEEECCCcccc
Confidence 4457899999999999999842 22222221 122477788888874
No 397
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=90.58 E-value=0.34 Score=47.32 Aligned_cols=17 Identities=29% Similarity=0.384 Sum_probs=14.7
Q ss_pred CCeeEEccCCCCccchh
Q 013173 183 RDLMACAQTGSGKTAAF 199 (448)
Q Consensus 183 ~d~lv~a~TGsGKT~~~ 199 (448)
.++++.+|.|+|||...
T Consensus 31 ~~~ll~Gp~G~GKT~la 47 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLA 47 (305)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 46999999999999853
No 398
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=90.56 E-value=0.69 Score=48.68 Aligned_cols=51 Identities=18% Similarity=0.223 Sum_probs=31.1
Q ss_pred CCeeEEEEcCCcccccC----C---CHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHH
Q 013173 296 QMIRYLALDEADRMLDM----G---FEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQ 347 (448)
Q Consensus 296 ~~v~~lVlDEah~ll~~----g---f~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~ 347 (448)
+--+.+.|||+|.|... + -...+..++-.|+-. ...+++.++-||--+++-
T Consensus 603 saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl-~~R~gV~viaATNRPDiI 660 (802)
T KOG0733|consen 603 SAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGL-EERRGVYVIAATNRPDII 660 (802)
T ss_pred CCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhccc-ccccceEEEeecCCCccc
Confidence 33467899999998531 1 222344444444332 345678899999866643
No 399
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=90.55 E-value=1.8 Score=43.59 Aligned_cols=41 Identities=22% Similarity=0.285 Sum_probs=25.0
Q ss_pred CCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEec
Q 013173 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSA 340 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SA 340 (448)
....+++||||+|.|-. .....+++.+..+ +....+|++|.
T Consensus 139 ~~~~kVviIDead~m~~----~aanaLLK~LEep-p~~~~~IL~t~ 179 (365)
T PRK07471 139 EGGWRVVIVDTADEMNA----NAANALLKVLEEP-PARSLFLLVSH 179 (365)
T ss_pred cCCCEEEEEechHhcCH----HHHHHHHHHHhcC-CCCeEEEEEEC
Confidence 35678899999998854 4445555555544 33443444443
No 400
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=90.55 E-value=0.59 Score=46.40 Aligned_cols=46 Identities=17% Similarity=0.218 Sum_probs=29.9
Q ss_pred hHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHH
Q 013173 178 ISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSS 237 (448)
Q Consensus 178 ~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~ 237 (448)
.+..+++++++++||||||+.. -.++..+-. .-+++++--+.||..
T Consensus 156 ~v~~~~nili~G~tgSGKTTll-~aL~~~ip~-------------~~ri~tiEd~~El~l 201 (332)
T PRK13900 156 AVISKKNIIISGGTSTGKTTFT-NAALREIPA-------------IERLITVEDAREIVL 201 (332)
T ss_pred HHHcCCcEEEECCCCCCHHHHH-HHHHhhCCC-------------CCeEEEecCCCcccc
Confidence 3447899999999999999942 233333311 124677767777643
No 401
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.48 E-value=2.9 Score=42.02 Aligned_cols=42 Identities=12% Similarity=0.292 Sum_probs=25.1
Q ss_pred CCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccC
Q 013173 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATF 342 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~ 342 (448)
+...++|||||+|.|.. ..+..++..+..+ +... +++++++-
T Consensus 106 ~~~~kiviIDE~~~l~~----~~~~~ll~~le~~-~~~~-~~Il~~~~ 147 (367)
T PRK14970 106 TGKYKIYIIDEVHMLSS----AAFNAFLKTLEEP-PAHA-IFILATTE 147 (367)
T ss_pred cCCcEEEEEeChhhcCH----HHHHHHHHHHhCC-CCce-EEEEEeCC
Confidence 45678999999998754 3345555556543 3333 34444543
No 402
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=90.40 E-value=1.5 Score=41.80 Aligned_cols=26 Identities=8% Similarity=-0.027 Sum_probs=19.5
Q ss_pred CCCCeeEEccCCCCccchhhhhHHHH
Q 013173 181 GGRDLMACAQTGSGKTAAFCFPIISG 206 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~~lpil~~ 206 (448)
.|.-+++.+++|+|||...+-.+.+.
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~ 60 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQ 60 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45678999999999998655444443
No 403
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=90.36 E-value=4.8 Score=43.84 Aligned_cols=120 Identities=16% Similarity=0.239 Sum_probs=77.4
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHH---HHHhc-CccEEEeChHHHHHHHhcccccCCC
Q 013173 222 VYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQL---RELER-GVDILVATPGRLVDLLERARVSLQM 297 (448)
Q Consensus 222 ~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~---~~l~~-~~~Ilv~Tp~~l~~~l~~~~~~l~~ 297 (448)
.+.++||+++|+..+..+.+.+... ++++..++++....+.. ..+.. ..+|+||| +.+. ..+++..
T Consensus 441 ~g~~vLIf~~tk~~ae~L~~~L~~~----gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t-----~~L~-rGfDiP~ 510 (655)
T TIGR00631 441 RNERVLVTTLTKKMAEDLTDYLKEL----GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGI-----NLLR-EGLDLPE 510 (655)
T ss_pred CCCEEEEEECCHHHHHHHHHHHhhh----ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEc-----Chhc-CCeeeCC
Confidence 3457999999999999999988874 57788888876654333 23333 37899999 3333 4568999
Q ss_pred eeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhh
Q 013173 298 IRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDF 353 (448)
Q Consensus 298 v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~ 353 (448)
+++||+=|++...-......+..++.+..... .-.++++--..+..+...+...
T Consensus 511 v~lVvi~DadifG~p~~~~~~iqriGRagR~~--~G~vi~~~~~~~~~~~~ai~~~ 564 (655)
T TIGR00631 511 VSLVAILDADKEGFLRSERSLIQTIGRAARNV--NGKVIMYADKITDSMQKAIEET 564 (655)
T ss_pred CcEEEEeCcccccCCCCHHHHHHHhcCCCCCC--CCEEEEEEcCCCHHHHHHHHHH
Confidence 99999988886533222334444443333332 2346666666766666555543
No 404
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=90.34 E-value=0.47 Score=48.22 Aligned_cols=17 Identities=24% Similarity=0.429 Sum_probs=15.0
Q ss_pred CCeeEEccCCCCccchh
Q 013173 183 RDLMACAQTGSGKTAAF 199 (448)
Q Consensus 183 ~d~lv~a~TGsGKT~~~ 199 (448)
+.+++++|+|+|||+..
T Consensus 166 ~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 166 KGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CceEEECCCCCChHHHH
Confidence 57999999999999854
No 405
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=90.34 E-value=4.5 Score=44.32 Aligned_cols=110 Identities=16% Similarity=0.229 Sum_probs=67.0
Q ss_pred ceEEEEcCcHH--------HHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHH---hc-CccEEEeChHHHHHHHhcc
Q 013173 224 PLALILAPTRE--------LSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLREL---ER-GVDILVATPGRLVDLLERA 291 (448)
Q Consensus 224 ~~~lil~Ptre--------L~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~~-~~~Ilv~Tp~~l~~~l~~~ 291 (448)
-+++|+||+.+ -+.++++.+.+.. .++++..++|+.+..+....+ .. ..+|||||. .+. .
T Consensus 472 ~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~--~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~-----vie-~ 543 (681)
T PRK10917 472 RQAYVVCPLIEESEKLDLQSAEETYEELQEAF--PELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATT-----VIE-V 543 (681)
T ss_pred CcEEEEEcccccccchhHHHHHHHHHHHHHHC--CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECc-----cee-e
Confidence 46999999653 3445556655542 247899999998866554433 33 379999994 223 3
Q ss_pred cccCCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchH
Q 013173 292 RVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKE 345 (448)
Q Consensus 292 ~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~ 345 (448)
.+++.+++++|+..+++.. ..++.....+.........-+++++....++
T Consensus 544 GiDip~v~~VIi~~~~r~g----ls~lhQ~~GRvGR~g~~g~~ill~~~~~~~~ 593 (681)
T PRK10917 544 GVDVPNATVMVIENAERFG----LAQLHQLRGRVGRGAAQSYCVLLYKDPLSET 593 (681)
T ss_pred CcccCCCcEEEEeCCCCCC----HHHHHHHhhcccCCCCceEEEEEECCCCChh
Confidence 5689999999999998642 1345444444443322333344443443333
No 406
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.30 E-value=0.5 Score=50.63 Aligned_cols=41 Identities=32% Similarity=0.327 Sum_probs=31.1
Q ss_pred CCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEec
Q 013173 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSA 340 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SA 340 (448)
+++-+.||||||---||..-+..+++.+..+ ..+ ++++.=|
T Consensus 620 lr~P~VLILDEATSALDaeSE~lVq~aL~~~----~~~-rTVlvIA 660 (716)
T KOG0058|consen 620 LRNPRVLILDEATSALDAESEYLVQEALDRL----MQG-RTVLVIA 660 (716)
T ss_pred hcCCCEEEEechhhhcchhhHHHHHHHHHHh----hcC-CeEEEEe
Confidence 5777889999999999987777888888776 334 4666555
No 407
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=90.15 E-value=1 Score=41.81 Aligned_cols=53 Identities=21% Similarity=0.179 Sum_probs=33.7
Q ss_pred CCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhc
Q 013173 181 GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFS 247 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~ 247 (448)
.|.-+++.+++|+|||...+-.+...+.+ +-.++++ -+.+...++.+.+..+.
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~-------------g~~~~y~-s~e~~~~~l~~~~~~~~ 67 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKN-------------GEKAMYI-SLEEREERILGYAKSKG 67 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC-------------CCeEEEE-ECCCCHHHHHHHHHHcC
Confidence 35678999999999987544334433322 1125555 44556778888887764
No 408
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=90.15 E-value=3.4 Score=40.93 Aligned_cols=34 Identities=24% Similarity=0.237 Sum_probs=24.9
Q ss_pred CHHHHhHHhhHhC--CC---CeeEEccCCCCccchhhhh
Q 013173 169 TPVQRHAIPISIG--GR---DLMACAQTGSGKTAAFCFP 202 (448)
Q Consensus 169 t~~Q~~~i~~i~~--g~---d~lv~a~TGsGKT~~~~lp 202 (448)
.|+|...+..+.. ++ -+++++|.|+|||......
T Consensus 3 yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~ 41 (325)
T PRK08699 3 YPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFA 41 (325)
T ss_pred CCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHH
Confidence 5777777776653 32 4889999999999875543
No 409
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=90.13 E-value=1.9 Score=42.18 Aligned_cols=17 Identities=35% Similarity=0.499 Sum_probs=14.6
Q ss_pred CeeEEccCCCCccchhh
Q 013173 184 DLMACAQTGSGKTAAFC 200 (448)
Q Consensus 184 d~lv~a~TGsGKT~~~~ 200 (448)
++++.++.|+|||.+..
T Consensus 40 ~~ll~G~~G~GKt~~~~ 56 (319)
T PRK00440 40 HLLFAGPPGTGKTTAAL 56 (319)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 58999999999998643
No 410
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=90.06 E-value=3.6 Score=40.61 Aligned_cols=59 Identities=20% Similarity=0.278 Sum_probs=33.8
Q ss_pred CCeeEEEEcCCcccc-cCCCHHHHHHHHHHcCC--CCCCCcEEEEEeccCchHHHHHHHhhh
Q 013173 296 QMIRYLALDEADRML-DMGFEPQIRKIVQQMDM--PPPGMRQTMLFSATFPKEIQRLASDFL 354 (448)
Q Consensus 296 ~~v~~lVlDEah~ll-~~gf~~~i~~i~~~l~~--~~~~~~q~i~~SAT~~~~v~~l~~~~l 354 (448)
.+.++||+|=+-++. +.....++..+...++. +..+.--++.++||...+...-+..|.
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f~ 256 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAFH 256 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHHH
Confidence 556778888887664 22233556665554321 222334578899997655444455554
No 411
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=89.88 E-value=0.63 Score=51.41 Aligned_cols=72 Identities=22% Similarity=0.233 Sum_probs=51.5
Q ss_pred CCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013173 166 VKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK 245 (448)
Q Consensus 166 ~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~ 245 (448)
..++|-|+.++.. ...+++|.|..|||||.+..-=+. +++.... ...-++|+|+-|+..|..+.+.+.+
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~l~~ria-~Li~~~~--------i~P~~IL~lTFT~kAA~em~~Rl~~ 71 (726)
T TIGR01073 3 AHLNPEQREAVKT--TEGPLLIMAGAGSGKTRVLTHRIA-HLIAEKN--------VAPWNILAITFTNKAAREMKERVEK 71 (726)
T ss_pred cccCHHHHHHHhC--CCCCEEEEeCCCCCHHHHHHHHHH-HHHHcCC--------CCHHHeeeeeccHHHHHHHHHHHHH
Confidence 3589999999975 356899999999999997443333 3333210 0112489999999999999988887
Q ss_pred hcc
Q 013173 246 FSY 248 (448)
Q Consensus 246 ~~~ 248 (448)
+..
T Consensus 72 ~~~ 74 (726)
T TIGR01073 72 LLG 74 (726)
T ss_pred Hhc
Confidence 643
No 412
>PRK10867 signal recognition particle protein; Provisional
Probab=89.78 E-value=3.3 Score=42.65 Aligned_cols=17 Identities=29% Similarity=0.380 Sum_probs=14.2
Q ss_pred CeeEEccCCCCccchhh
Q 013173 184 DLMACAQTGSGKTAAFC 200 (448)
Q Consensus 184 d~lv~a~TGsGKT~~~~ 200 (448)
-+++++++|+|||+...
T Consensus 102 vI~~vG~~GsGKTTtaa 118 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAG 118 (433)
T ss_pred EEEEECCCCCcHHHHHH
Confidence 47899999999998643
No 413
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=89.69 E-value=0.8 Score=41.95 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=19.0
Q ss_pred CCCCeeEEccCCCCccchhhhhHHH
Q 013173 181 GGRDLMACAQTGSGKTAAFCFPIIS 205 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~~lpil~ 205 (448)
.|+-+.+.+++|+|||...+..+.+
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~ 35 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVN 35 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3566899999999999976554443
No 414
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=89.66 E-value=2.9 Score=37.33 Aligned_cols=54 Identities=20% Similarity=0.364 Sum_probs=38.4
Q ss_pred CCCeeEEEEcCCcccccCCCH--HHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHh
Q 013173 295 LQMIRYLALDEADRMLDMGFE--PQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASD 352 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~--~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~ 352 (448)
-...++|||||+=..+..++. +.+..+++.. |...-+|+..-..|+++.+++..
T Consensus 95 ~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~r----p~~~evVlTGR~~p~~l~e~AD~ 150 (173)
T TIGR00708 95 DPELDLVLLDELTYALKYGYLDVEEVVEALQER----PGHQHVIITGRGCPQDLLELADL 150 (173)
T ss_pred cCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhC----CCCCEEEEECCCCCHHHHHhCce
Confidence 356788999999988888853 3455555544 56666777777788888876653
No 415
>PRK07004 replicative DNA helicase; Provisional
Probab=89.65 E-value=0.89 Score=47.27 Aligned_cols=146 Identities=12% Similarity=0.099 Sum_probs=69.4
Q ss_pred CCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEc---CcHHHHHHHHHHHHHhcccCCcEEEEE
Q 013173 181 GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILA---PTRELSSQIHVEAKKFSYQTGVKVVVA 257 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~---PtreL~~qi~~~~~~~~~~~~~~~~~~ 257 (448)
.|.=+++.|.+|+|||...+-.+.+...+.+ ..+++++ +..+|+..+..... ++....+
T Consensus 212 ~g~liviaarpg~GKT~~al~ia~~~a~~~~------------~~v~~fSlEM~~~ql~~R~la~~~------~v~~~~i 273 (460)
T PRK07004 212 GGELIIVAGRPSMGKTAFSMNIGEYVAVEYG------------LPVAVFSMEMPGTQLAMRMLGSVG------RLDQHRM 273 (460)
T ss_pred CCceEEEEeCCCCCccHHHHHHHHHHHHHcC------------CeEEEEeCCCCHHHHHHHHHHhhc------CCCHHHH
Confidence 3455788999999999865544433322211 1255553 44444444332221 1111111
Q ss_pred -ECCCChHHH------HHHHhcCccEEEe-----ChHHHHHHHhcccccCCCeeEEEEcCCcccccCC----CHHHHHHH
Q 013173 258 -YGGAPINQQ------LRELERGVDILVA-----TPGRLVDLLERARVSLQMIRYLALDEADRMLDMG----FEPQIRKI 321 (448)
Q Consensus 258 -~gg~~~~~~------~~~l~~~~~Ilv~-----Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~g----f~~~i~~i 321 (448)
.|..+..++ ...+.+ ..+.|. |+..+...+.+.+.....+++||||=.+.|...+ ....+..|
T Consensus 274 ~~g~l~~~e~~~~~~a~~~l~~-~~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~~~~~~~~r~~ei~~I 352 (460)
T PRK07004 274 RTGRLTDEDWPKLTHAVQKMSE-AQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYLQLMSGSSQGENRATEISEI 352 (460)
T ss_pred hcCCCCHHHHHHHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEChhhhccCCCCCCcHHHHHHHH
Confidence 222222222 123333 345552 4444444333322223457899999999885322 33345556
Q ss_pred HHHcCCCCC-CCcEEEEEeccCchHH
Q 013173 322 VQQMDMPPP-GMRQTMLFSATFPKEI 346 (448)
Q Consensus 322 ~~~l~~~~~-~~~q~i~~SAT~~~~v 346 (448)
...|+.... .++.++++|- ++..+
T Consensus 353 sr~LK~lAkel~ipVi~lsQ-LnR~~ 377 (460)
T PRK07004 353 SRSLKSLAKELDVPVIALSQ-LNRGL 377 (460)
T ss_pred HHHHHHHHHHhCCeEEEEec-cChhh
Confidence 555532211 2455666664 44443
No 416
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=89.62 E-value=1.3 Score=46.79 Aligned_cols=59 Identities=19% Similarity=0.252 Sum_probs=35.5
Q ss_pred CCCCccCCCcccCC-CCHHHHHHHHHC-CCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchh
Q 013173 138 ENVPPAVNTFAEID-LGEALNLNIRRC-KYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 138 ~~~~~~~~~f~~l~-L~~~l~~~l~~~-~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~ 199 (448)
...+++-.+|.+++ ++..+.+..... .+..|-.++.--+. --+-+++.+|.|||||..+
T Consensus 180 ~~~~~snv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~---PprGvLlHGPPGCGKT~lA 240 (802)
T KOG0733|consen 180 LEFPESNVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVR---PPRGVLLHGPPGCGKTSLA 240 (802)
T ss_pred cCCCCCCcchhhccChHHHHHHHHHHHHHhcCchhHhhcCCC---CCCceeeeCCCCccHHHHH
Confidence 34444455788885 665554443321 14456555543331 2377999999999999843
No 417
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=89.61 E-value=0.67 Score=46.61 Aligned_cols=18 Identities=22% Similarity=0.375 Sum_probs=15.4
Q ss_pred CCCeeEEccCCCCccchh
Q 013173 182 GRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 182 g~d~lv~a~TGsGKT~~~ 199 (448)
.+.+++.+|+|+|||+..
T Consensus 156 p~gvLL~GppGtGKT~la 173 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLA 173 (364)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 456999999999999854
No 418
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=89.53 E-value=2.7 Score=45.86 Aligned_cols=45 Identities=11% Similarity=0.271 Sum_probs=27.6
Q ss_pred CCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchH
Q 013173 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKE 345 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~ 345 (448)
...-+++||||||.|.. .....++..+..++ ... +++|.+|-+..
T Consensus 116 ~g~~KV~IIDEa~~LT~----~A~NALLKtLEEPP-~~t-ifILaTte~~K 160 (725)
T PRK07133 116 QSKYKIYIIDEVHMLSK----SAFNALLKTLEEPP-KHV-IFILATTEVHK 160 (725)
T ss_pred cCCCEEEEEEChhhCCH----HHHHHHHHHhhcCC-Cce-EEEEEcCChhh
Confidence 35678999999998865 34556666666553 334 34444454433
No 419
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=89.51 E-value=0.29 Score=43.64 Aligned_cols=46 Identities=26% Similarity=0.259 Sum_probs=30.8
Q ss_pred HHHHHhcCccEEEeChHHHHHHHhccccc--CCCeeEEEEcCCccccc
Q 013173 266 QLRELERGVDILVATPGRLVDLLERARVS--LQMIRYLALDEADRMLD 311 (448)
Q Consensus 266 ~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~--l~~v~~lVlDEah~ll~ 311 (448)
..+.....+||||++...|++-.....+. ...-.+|||||||.+.+
T Consensus 112 ~~r~~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 112 LARELAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp HHHHCGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred HHHHhcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 34555556899999999887754433322 23446899999998865
No 420
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=89.48 E-value=0.62 Score=50.38 Aligned_cols=50 Identities=16% Similarity=0.207 Sum_probs=38.4
Q ss_pred CCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013173 182 GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF 246 (448)
Q Consensus 182 g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~ 246 (448)
..++++.|+||+|||..+++|-+-.+ + .-+||+=|.-|+...+....++.
T Consensus 224 ~~H~Lv~ApTgsGKt~g~VIPnLL~~---~------------gS~VV~DpKgEl~~~Ta~~R~~~ 273 (641)
T PRK13822 224 STHGLVFAGSGGFKTTSVVVPTALKW---G------------GPLVVLDPSTEVAPMVSEHRRDA 273 (641)
T ss_pred CceEEEEeCCCCCccceEehhhhhcC---C------------CCEEEEeCcHHHHHHHHHHHHHC
Confidence 46899999999999999999976321 1 12788889999987776666554
No 421
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=89.46 E-value=0.37 Score=49.68 Aligned_cols=41 Identities=22% Similarity=0.344 Sum_probs=30.1
Q ss_pred CCHHHHhHHhhHhCCCC--eeEEccCCCCccchhhhhHHHHHhh
Q 013173 168 PTPVQRHAIPISIGGRD--LMACAQTGSGKTAAFCFPIISGIMR 209 (448)
Q Consensus 168 pt~~Q~~~i~~i~~g~d--~lv~a~TGsGKT~~~~lpil~~l~~ 209 (448)
+++.|...+..+++... +++.+|||||||+. +..+|+.+..
T Consensus 242 ~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~ 284 (500)
T COG2804 242 MSPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNT 284 (500)
T ss_pred CCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcC
Confidence 46778888877776554 88999999999986 4455555543
No 422
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=89.33 E-value=0.56 Score=50.73 Aligned_cols=49 Identities=20% Similarity=0.147 Sum_probs=37.5
Q ss_pred CCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013173 182 GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK 245 (448)
Q Consensus 182 g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~ 245 (448)
.++++++|+||||||..+++|.|-.. ...+||+=|--|+........++
T Consensus 175 ~~HvlviapTgSGKgvg~ViPnLL~~---------------~~S~VV~D~KGE~~~~Tag~R~~ 223 (636)
T PRK13880 175 PEHVLTYAPTRSGKGVGLVVPTLLSW---------------GHSSVITDLKGELWALTAGWRQK 223 (636)
T ss_pred CceEEEEecCCCCCceEEEccchhhC---------------CCCEEEEeCcHHHHHHHHHHHHH
Confidence 36899999999999999999987432 11389999999997666554433
No 423
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=89.22 E-value=9 Score=35.36 Aligned_cols=154 Identities=12% Similarity=0.128 Sum_probs=81.3
Q ss_pred CCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEc---CcHHHHHHHHHH----HHHhcccCCcEEE
Q 013173 183 RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILA---PTRELSSQIHVE----AKKFSYQTGVKVV 255 (448)
Q Consensus 183 ~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~---PtreL~~qi~~~----~~~~~~~~~~~~~ 255 (448)
.=+++-++.|+|||+.-+..++=.+... -++.+++ ++|+...|+... ...|... .+.+.
T Consensus 29 sL~lIEGd~~tGKSvLsqr~~YG~L~~g-------------~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G-~l~~~ 94 (235)
T COG2874 29 SLILIEGDNGTGKSVLSQRFAYGFLMNG-------------YRVTYVSTELTVREFIKQMESLSYDVSDFLLSG-RLLFF 94 (235)
T ss_pred eEEEEECCCCccHHHHHHHHHHHHHhCC-------------ceEEEEEechhHHHHHHHHHhcCCCchHHHhcc-eeEEE
Confidence 4478999999999986555444333221 2345554 778888776432 1222110 11111
Q ss_pred EE-ECCCChH-HHHHHHhcCccEEEeChHHHHHHH-hcccccCCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCC
Q 013173 256 VA-YGGAPIN-QQLRELERGVDILVATPGRLVDLL-ERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGM 332 (448)
Q Consensus 256 ~~-~gg~~~~-~~~~~l~~~~~Ilv~Tp~~l~~~l-~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~ 332 (448)
.+ ..+.... .+.+ .+++.+ +..+ ..+-+++|+|=...++...-..++..++..++... ..
T Consensus 95 ~~~~~~~~~~~~~~~--------------~~L~~l~~~~k--~~~~dViIIDSls~~~~~~~~~~vl~fm~~~r~l~-d~ 157 (235)
T COG2874 95 PVNLEPVNWGRRSAR--------------KLLDLLLEFIK--RWEKDVIIIDSLSAFATYDSEDAVLNFMTFLRKLS-DL 157 (235)
T ss_pred EecccccccChHHHH--------------HHHHHHHhhHH--hhcCCEEEEecccHHhhcccHHHHHHHHHHHHHHH-hC
Confidence 11 0111111 1111 122222 2222 44456799999988776554456666665553332 22
Q ss_pred cEEEEEecc---CchHHHHHHHhhhcCcEEEEeccccc
Q 013173 333 RQTMLFSAT---FPKEIQRLASDFLANYIFLAVGRVGS 367 (448)
Q Consensus 333 ~q~i~~SAT---~~~~v~~l~~~~l~~~~~i~v~~~~~ 367 (448)
-.+|++|+- +++++.-.++....-++.+.....+.
T Consensus 158 gKvIilTvhp~~l~e~~~~rirs~~d~~l~L~~~~~Gg 195 (235)
T COG2874 158 GKVIILTVHPSALDEDVLTRIRSACDVYLRLRLEELGG 195 (235)
T ss_pred CCEEEEEeChhhcCHHHHHHHHHhhheeEEEEhhhhCC
Confidence 358888875 56776666666666666665544433
No 424
>PRK04328 hypothetical protein; Provisional
Probab=89.16 E-value=1.4 Score=41.85 Aligned_cols=54 Identities=15% Similarity=0.216 Sum_probs=35.9
Q ss_pred CCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcc
Q 013173 181 GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSY 248 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~ 248 (448)
.|.-+++.+++|+|||...+-.+.+.+.+. -.+++++ +.+-..++.+.++.|..
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~g-------------e~~lyis-~ee~~~~i~~~~~~~g~ 75 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMG-------------EPGVYVA-LEEHPVQVRRNMRQFGW 75 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcC-------------CcEEEEE-eeCCHHHHHHHHHHcCC
Confidence 467799999999999986554454443221 1256665 66666777777777653
No 425
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=89.11 E-value=1.1 Score=46.28 Aligned_cols=19 Identities=21% Similarity=0.323 Sum_probs=16.1
Q ss_pred CCCCeeEEccCCCCccchh
Q 013173 181 GGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~ 199 (448)
..+.+++++|+|+|||+..
T Consensus 216 ~p~gVLL~GPPGTGKT~LA 234 (438)
T PTZ00361 216 PPKGVILYGPPGTGKTLLA 234 (438)
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3467999999999999964
No 426
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=89.07 E-value=0.43 Score=50.68 Aligned_cols=43 Identities=16% Similarity=0.200 Sum_probs=35.3
Q ss_pred CCCHHHHhHHhh----HhCCCCeeEEccCCCCccchhhhhHHHHHhh
Q 013173 167 KPTPVQRHAIPI----SIGGRDLMACAQTGSGKTAAFCFPIISGIMR 209 (448)
Q Consensus 167 ~pt~~Q~~~i~~----i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~ 209 (448)
+|+.||...+.. +-.|+--|+.+|||+|||+..+-.+|.+|-.
T Consensus 15 ~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~~ 61 (821)
T KOG1133|consen 15 TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLRD 61 (821)
T ss_pred CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHHH
Confidence 688999988764 4478989999999999999887777776654
No 427
>PRK09087 hypothetical protein; Validated
Probab=89.06 E-value=1.1 Score=41.75 Aligned_cols=42 Identities=10% Similarity=0.092 Sum_probs=25.2
Q ss_pred EEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHH
Q 013173 300 YLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEI 346 (448)
Q Consensus 300 ~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v 346 (448)
+|+||++|.+. .-...+..+++.+. ....++|+.|.|.|.++
T Consensus 90 ~l~iDDi~~~~--~~~~~lf~l~n~~~---~~g~~ilits~~~p~~~ 131 (226)
T PRK09087 90 PVLIEDIDAGG--FDETGLFHLINSVR---QAGTSLLMTSRLWPSSW 131 (226)
T ss_pred eEEEECCCCCC--CCHHHHHHHHHHHH---hCCCeEEEECCCChHHh
Confidence 79999999763 23466777776662 22345555454445543
No 428
>PRK10263 DNA translocase FtsK; Provisional
Probab=89.00 E-value=2.3 Score=48.90 Aligned_cols=27 Identities=30% Similarity=0.433 Sum_probs=21.1
Q ss_pred CCeeEEccCCCCccchhhhhHHHHHhh
Q 013173 183 RDLMACAQTGSGKTAAFCFPIISGIMR 209 (448)
Q Consensus 183 ~d~lv~a~TGsGKT~~~~lpil~~l~~ 209 (448)
-+++|.+.||||||.+....|+..+++
T Consensus 1011 PHLLIAGaTGSGKSv~LntLIlSLl~~ 1037 (1355)
T PRK10263 1011 PHLLVAGTTGSGKSVGVNAMILSMLYK 1037 (1355)
T ss_pred CcEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 589999999999999866656555544
No 429
>PTZ00293 thymidine kinase; Provisional
Probab=88.99 E-value=1.6 Score=40.26 Aligned_cols=18 Identities=28% Similarity=0.220 Sum_probs=14.4
Q ss_pred CCCeeEEccCCCCccchh
Q 013173 182 GRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 182 g~d~lv~a~TGsGKT~~~ 199 (448)
|+=.++.+|.+||||.-.
T Consensus 4 G~i~vi~GpMfSGKTteL 21 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTEL 21 (211)
T ss_pred eEEEEEECCCCChHHHHH
Confidence 455688999999999753
No 430
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=88.88 E-value=0.51 Score=46.42 Aligned_cols=58 Identities=24% Similarity=0.265 Sum_probs=38.9
Q ss_pred CCCCCHHHHhHHh-hHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHH
Q 013173 165 YVKPTPVQRHAIP-ISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELS 236 (448)
Q Consensus 165 ~~~pt~~Q~~~i~-~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~ 236 (448)
+..+++.|..-+. .+..++++++|++||||||.. +.+++..+-.. -+.+.+--|.|+.
T Consensus 125 ~gt~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~-lnall~~Ip~~-------------~rivtIEdt~E~~ 183 (312)
T COG0630 125 YGTISPEQAAYLWLAIEARKSIIICGGTASGKTTL-LNALLDFIPPE-------------ERIVTIEDTPELK 183 (312)
T ss_pred cCCCCHHHHHHHHHHHHcCCcEEEECCCCCCHHHH-HHHHHHhCCch-------------hcEEEEecccccc
Confidence 4567777765554 455889999999999999985 44444444211 2367777777764
No 431
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=88.83 E-value=0.93 Score=46.51 Aligned_cols=79 Identities=20% Similarity=0.079 Sum_probs=51.7
Q ss_pred HHHHHHHCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHH
Q 013173 156 LNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTREL 235 (448)
Q Consensus 156 l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL 235 (448)
++..|+. ++-.+-..|.++.-..-.|.- .+.+=.|||||...++-+- .++.+ ...-+++|.+=|+.|
T Consensus 152 ~l~~ies-kIanfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Kaa--~lh~k---------nPd~~I~~Tfftk~L 218 (660)
T COG3972 152 LLDTIES-KIANFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKAA--ELHSK---------NPDSRIAFTFFTKIL 218 (660)
T ss_pred HHHHHHH-HHhcccchhheeeeecCCchh-hhhcccCCCchhHHHHHHH--HHhcC---------CCCceEEEEeehHHH
Confidence 3444443 445566677777655555655 6788899999996443322 12211 112359999999999
Q ss_pred HHHHHHHHHHhc
Q 013173 236 SSQIHVEAKKFS 247 (448)
Q Consensus 236 ~~qi~~~~~~~~ 247 (448)
+.++...+.+|+
T Consensus 219 ~s~~r~lv~~F~ 230 (660)
T COG3972 219 ASTMRTLVPEFF 230 (660)
T ss_pred HHHHHHHHHHHH
Confidence 999999888876
No 432
>PRK10865 protein disaggregation chaperone; Provisional
Probab=88.80 E-value=1.3 Score=49.84 Aligned_cols=18 Identities=28% Similarity=0.342 Sum_probs=15.5
Q ss_pred CCeeEEccCCCCccchhh
Q 013173 183 RDLMACAQTGSGKTAAFC 200 (448)
Q Consensus 183 ~d~lv~a~TGsGKT~~~~ 200 (448)
.++++.+++|+|||....
T Consensus 200 ~n~lL~G~pGvGKT~l~~ 217 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIVE 217 (857)
T ss_pred CceEEECCCCCCHHHHHH
Confidence 479999999999999643
No 433
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=88.60 E-value=0.58 Score=50.00 Aligned_cols=41 Identities=27% Similarity=0.321 Sum_probs=28.2
Q ss_pred CCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEe
Q 013173 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFS 339 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~S 339 (448)
+++-+++++||+---+|...+..+.+.+..+ .+++-+|+.|
T Consensus 485 l~~~~illLDEpts~LD~~~~~~i~~~L~~~----~~~~tiIiit 525 (571)
T TIGR02203 485 LKDAPILILDEATSALDNESERLVQAALERL----MQGRTTLVIA 525 (571)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHH----hCCCEEEEEe
Confidence 4566789999999888877777777666665 3334444443
No 434
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=88.59 E-value=0.75 Score=45.89 Aligned_cols=19 Identities=26% Similarity=0.417 Sum_probs=16.0
Q ss_pred CCCCeeEEccCCCCccchh
Q 013173 181 GGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~ 199 (448)
.+..+++++|||||||+..
T Consensus 121 ~~g~ili~G~tGSGKTT~l 139 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTL 139 (343)
T ss_pred cCcEEEEECCCCCCHHHHH
Confidence 3567999999999999953
No 435
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=88.57 E-value=2.3 Score=40.15 Aligned_cols=29 Identities=24% Similarity=0.357 Sum_probs=20.7
Q ss_pred hHhCCC-CeeEEccCCCCccchhhhhHHHHH
Q 013173 178 ISIGGR-DLMACAQTGSGKTAAFCFPIISGI 207 (448)
Q Consensus 178 ~i~~g~-d~lv~a~TGsGKT~~~~lpil~~l 207 (448)
.+..++ -+.++++-|||||...- .++..+
T Consensus 46 ~i~d~qg~~~vtGevGsGKTv~~R-al~~s~ 75 (269)
T COG3267 46 AIADGQGILAVTGEVGSGKTVLRR-ALLASL 75 (269)
T ss_pred HHhcCCceEEEEecCCCchhHHHH-HHHHhc
Confidence 344555 68899999999999866 444333
No 436
>PRK04841 transcriptional regulator MalT; Provisional
Probab=88.56 E-value=4.7 Score=45.53 Aligned_cols=44 Identities=16% Similarity=0.298 Sum_probs=31.8
Q ss_pred CeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCch
Q 013173 297 MIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPK 344 (448)
Q Consensus 297 ~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~ 344 (448)
.--+||||++|.+-+......+..++..+ +....+|+.|-+.|+
T Consensus 121 ~~~~lvlDD~h~~~~~~~~~~l~~l~~~~----~~~~~lv~~sR~~~~ 164 (903)
T PRK04841 121 QPLYLVIDDYHLITNPEIHEAMRFFLRHQ----PENLTLVVLSRNLPP 164 (903)
T ss_pred CCEEEEEeCcCcCCChHHHHHHHHHHHhC----CCCeEEEEEeCCCCC
Confidence 34579999999886554556777777776 677778888877543
No 437
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=88.55 E-value=1.4 Score=40.21 Aligned_cols=55 Identities=20% Similarity=0.351 Sum_probs=44.9
Q ss_pred CCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhh
Q 013173 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDF 353 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~ 353 (448)
..+-+.+||||.-.-+|.-....+..++.++ +..-+.++||.-.=.+++.+|..+
T Consensus 149 vh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~----k~egr~viFSSH~m~EvealCDrv 203 (245)
T COG4555 149 VHDPSILVLDEPTSGLDIRTRRKFHDFIKQL----KNEGRAVIFSSHIMQEVEALCDRV 203 (245)
T ss_pred hcCCCeEEEcCCCCCccHHHHHHHHHHHHHh----hcCCcEEEEecccHHHHHHhhheE
Confidence 5677899999999888877778888889888 444568999998888888888653
No 438
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=88.51 E-value=1 Score=41.54 Aligned_cols=23 Identities=22% Similarity=0.212 Sum_probs=17.8
Q ss_pred CCCeeEEccCCCCccchhhhhHH
Q 013173 182 GRDLMACAQTGSGKTAAFCFPII 204 (448)
Q Consensus 182 g~d~lv~a~TGsGKT~~~~lpil 204 (448)
|.-+++.+++|+|||...+..+.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~ 41 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAV 41 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999986554443
No 439
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=88.50 E-value=0.92 Score=50.90 Aligned_cols=52 Identities=17% Similarity=0.179 Sum_probs=33.3
Q ss_pred CCCcccCCCCHHHHHHHHHCCC---CCCCHHHHhHHhhHhCCCCeeEEccCCCCccch
Q 013173 144 VNTFAEIDLGEALNLNIRRCKY---VKPTPVQRHAIPISIGGRDLMACAQTGSGKTAA 198 (448)
Q Consensus 144 ~~~f~~l~L~~~l~~~l~~~~~---~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~ 198 (448)
.-.|++.+....+++-|+++-+ ..|.-+|...| .--+-++.++|.|+|||+.
T Consensus 261 ~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~i---tpPrgvL~~GppGTGkTl~ 315 (1080)
T KOG0732|consen 261 SVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNI---TPPRGVLFHGPPGTGKTLM 315 (1080)
T ss_pred ccCccccccHHHHHHHHHHHHHhHhhhhhHhhhccc---CCCcceeecCCCCCchhHH
Confidence 3568888877777777776532 22222332222 2246699999999999985
No 440
>PRK05748 replicative DNA helicase; Provisional
Probab=88.49 E-value=1.7 Score=45.01 Aligned_cols=147 Identities=10% Similarity=0.051 Sum_probs=68.0
Q ss_pred CCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHH-HhcccCCcEEEEEEC
Q 013173 181 GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAK-KFSYQTGVKVVVAYG 259 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~-~~~~~~~~~~~~~~g 259 (448)
.|.-+++.|.+|+|||+..+-.+.+...+.+ -.+++++ .-.-..|+...+- .++ ++....+..
T Consensus 202 ~G~livIaarpg~GKT~~al~ia~~~a~~~g------------~~v~~fS-lEms~~~l~~R~l~~~~---~v~~~~i~~ 265 (448)
T PRK05748 202 PNDLIIVAARPSVGKTAFALNIAQNVATKTD------------KNVAIFS-LEMGAESLVMRMLCAEG---NIDAQRLRT 265 (448)
T ss_pred CCceEEEEeCCCCCchHHHHHHHHHHHHhCC------------CeEEEEe-CCCCHHHHHHHHHHHhc---CCCHHHhhc
Confidence 3455889999999999865543333222211 1245543 3334445544443 222 121111112
Q ss_pred CCChHHHHH-------HHhcCccEEEe-----ChHHHHHHHhcccccCCCeeEEEEcCCcccccCC-----CHHHHHHHH
Q 013173 260 GAPINQQLR-------ELERGVDILVA-----TPGRLVDLLERARVSLQMIRYLALDEADRMLDMG-----FEPQIRKIV 322 (448)
Q Consensus 260 g~~~~~~~~-------~l~~~~~Ilv~-----Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~g-----f~~~i~~i~ 322 (448)
|.-...++. .+.+ ..+.|. |+..+...+.+.......+++||||=.+.|-..+ ....+..|.
T Consensus 266 ~~l~~~e~~~~~~a~~~l~~-~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~~~~~~~~~r~~~i~~i~ 344 (448)
T PRK05748 266 GQLTDDDWPKLTIAMGSLSD-APIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQGSGRSGENRQQEVSEIS 344 (448)
T ss_pred CCCCHHHHHHHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcCCCCCCCcCHHHHHHHHH
Confidence 221122222 2222 345443 3444544443322111268899999999874221 223444554
Q ss_pred HHcCCCC-CCCcEEEEEeccCchH
Q 013173 323 QQMDMPP-PGMRQTMLFSATFPKE 345 (448)
Q Consensus 323 ~~l~~~~-~~~~q~i~~SAT~~~~ 345 (448)
..|+... ..++.++++|- ++..
T Consensus 345 ~~LK~lAke~~i~vi~lsQ-lnr~ 367 (448)
T PRK05748 345 RSLKALAKELKVPVIALSQ-LSRG 367 (448)
T ss_pred HHHHHHHHHhCCeEEEecc-cChh
Confidence 4442111 12355666655 4443
No 441
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=88.45 E-value=7.6 Score=38.57 Aligned_cols=40 Identities=18% Similarity=0.253 Sum_probs=27.2
Q ss_pred CCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEe
Q 013173 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFS 339 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~S 339 (448)
....+++|||+||+|.. ..-..+++.+..|++ ..-+|++|
T Consensus 106 ~g~~kV~iI~~ae~m~~----~AaNaLLKtLEEPp~-~t~fiL~t 145 (334)
T PRK07993 106 LGGAKVVWLPDAALLTD----AAANALLKTLEEPPE-NTWFFLAC 145 (334)
T ss_pred cCCceEEEEcchHhhCH----HHHHHHHHHhcCCCC-CeEEEEEE
Confidence 35678999999999966 455667777777643 34344444
No 442
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=88.40 E-value=1.5 Score=45.67 Aligned_cols=72 Identities=14% Similarity=0.160 Sum_probs=54.9
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHHh---c-CccEEEeChHHHHHHHhcccccCCC
Q 013173 222 VYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELE---R-GVDILVATPGRLVDLLERARVSLQM 297 (448)
Q Consensus 222 ~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~---~-~~~Ilv~Tp~~l~~~l~~~~~~l~~ 297 (448)
...++||.|-|+.-|.++...+++. ++++..++|+.+-.+....|. . .+.|||||- +-...+++.+
T Consensus 340 ~~~KvIIFc~tkr~~~~l~~~l~~~----~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATd------VAaRGLDi~d 409 (519)
T KOG0331|consen 340 SEGKVIIFCETKRTCDELARNLRRK----GWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATD------VAARGLDVPD 409 (519)
T ss_pred CCCcEEEEecchhhHHHHHHHHHhc----CcceeeecccccHHHHHHHHHhcccCCcceEEEcc------cccccCCCcc
Confidence 3457999999999999999988884 478889999988766554443 2 389999993 2334568888
Q ss_pred eeEEEE
Q 013173 298 IRYLAL 303 (448)
Q Consensus 298 v~~lVl 303 (448)
|++||-
T Consensus 410 V~lVIn 415 (519)
T KOG0331|consen 410 VDLVIN 415 (519)
T ss_pred ccEEEe
Confidence 888874
No 443
>PRK13876 conjugal transfer coupling protein TraG; Provisional
Probab=88.38 E-value=0.52 Score=51.06 Aligned_cols=50 Identities=18% Similarity=0.123 Sum_probs=38.5
Q ss_pred CCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013173 182 GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF 246 (448)
Q Consensus 182 g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~ 246 (448)
..++++.||||||||..+++|-|-.+- ..+||+=|--|+........+++
T Consensus 144 ~~hvLviApTrSGKgvg~VIPnLL~~~---------------~S~VV~D~KGEl~~~Ta~~R~~~ 193 (663)
T PRK13876 144 PEHVLCFAPTRSGKGVGLVVPTLLTWP---------------GSAIVHDIKGENWQLTAGFRARF 193 (663)
T ss_pred CceEEEEecCCCCcceeEehhhHHhCC---------------CCEEEEeCcchHHHHHHHHHHhC
Confidence 468999999999999999999775431 12788888888877766655553
No 444
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=88.34 E-value=0.52 Score=50.49 Aligned_cols=31 Identities=29% Similarity=0.372 Sum_probs=24.2
Q ss_pred CCCeeEEEEcCCcccccCCCHHHHHHHHHHc
Q 013173 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQM 325 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l 325 (448)
+++-+++++||+-.-+|...+..+.+.+..+
T Consensus 492 ~~~~~ililDEpts~lD~~~~~~i~~~l~~~ 522 (576)
T TIGR02204 492 LKDAPILLLDEATSALDAESEQLVQQALETL 522 (576)
T ss_pred HhCCCeEEEeCcccccCHHHHHHHHHHHHHH
Confidence 5667889999999888877667776666665
No 445
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=88.31 E-value=0.35 Score=53.06 Aligned_cols=31 Identities=23% Similarity=0.265 Sum_probs=24.0
Q ss_pred CCCeeEEEEcCCcccccCCCHHHHHHHHHHc
Q 013173 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQM 325 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l 325 (448)
+++-+++|+||+-.-+|..-+..+.+.+..+
T Consensus 617 l~~p~iliLDE~Ts~LD~~te~~i~~~l~~~ 647 (694)
T TIGR03375 617 LRDPPILLLDEPTSAMDNRSEERFKDRLKRW 647 (694)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 5677899999998888876666676666665
No 446
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=88.29 E-value=1.3 Score=42.08 Aligned_cols=19 Identities=26% Similarity=0.233 Sum_probs=16.9
Q ss_pred HhCCCCeeEEccCCCCccc
Q 013173 179 SIGGRDLMACAQTGSGKTA 197 (448)
Q Consensus 179 i~~g~d~lv~a~TGsGKT~ 197 (448)
+-.|+-+++.++.|+|||+
T Consensus 13 i~~Gqr~~I~G~~G~GKTT 31 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTT 31 (249)
T ss_pred cCCCCEEEEECCCCCCHHH
Confidence 3478999999999999997
No 447
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=88.22 E-value=2.4 Score=43.69 Aligned_cols=70 Identities=16% Similarity=0.219 Sum_probs=53.4
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHH---hc-CccEEEeChHHHHHHHhcccccCCCee
Q 013173 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLREL---ER-GVDILVATPGRLVDLLERARVSLQMIR 299 (448)
Q Consensus 224 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~~-~~~Ilv~Tp~~l~~~l~~~~~~l~~v~ 299 (448)
.++||.|++++-|..+++.++. .++.+..++|+.+..+....+ .. ..+|||||- .+. ..+++.++.
T Consensus 246 ~~~lVF~~s~~~~~~l~~~L~~----~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd-----~~~-~GiDip~v~ 315 (434)
T PRK11192 246 TRSIVFVRTRERVHELAGWLRK----AGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATD-----VAA-RGIDIDDVS 315 (434)
T ss_pred CeEEEEeCChHHHHHHHHHHHh----CCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEcc-----ccc-cCccCCCCC
Confidence 4699999999999999998887 467888999988866554433 33 379999993 333 356788999
Q ss_pred EEEE
Q 013173 300 YLAL 303 (448)
Q Consensus 300 ~lVl 303 (448)
+||.
T Consensus 316 ~VI~ 319 (434)
T PRK11192 316 HVIN 319 (434)
T ss_pred EEEE
Confidence 8884
No 448
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=88.21 E-value=1.7 Score=44.62 Aligned_cols=72 Identities=25% Similarity=0.302 Sum_probs=53.5
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHH---hc-CccEEEeChHHHHHHHhcccccCCCee
Q 013173 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLREL---ER-GVDILVATPGRLVDLLERARVSLQMIR 299 (448)
Q Consensus 224 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~~-~~~Ilv~Tp~~l~~~l~~~~~~l~~v~ 299 (448)
.++||.|+++..|..+++.+.. .++++..++|+.+..+....+ .. .++|||||. .+. ..+++.+|+
T Consensus 256 ~~~lVF~~t~~~~~~l~~~L~~----~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd-----v~~-rGiDip~v~ 325 (423)
T PRK04837 256 DRAIIFANTKHRCEEIWGHLAA----DGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATD-----VAA-RGLHIPAVT 325 (423)
T ss_pred CeEEEEECCHHHHHHHHHHHHh----CCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEec-----hhh-cCCCccccC
Confidence 3599999999999999888876 367889999988765554433 33 489999993 333 346788898
Q ss_pred EEEEcC
Q 013173 300 YLALDE 305 (448)
Q Consensus 300 ~lVlDE 305 (448)
+||.-+
T Consensus 326 ~VI~~d 331 (423)
T PRK04837 326 HVFNYD 331 (423)
T ss_pred EEEEeC
Confidence 877543
No 449
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=88.16 E-value=2.3 Score=45.92 Aligned_cols=45 Identities=16% Similarity=0.143 Sum_probs=27.9
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCCHHHHhHHhhH---hCCCCeeEEccCCCCccchhh
Q 013173 145 NTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPIS---IGGRDLMACAQTGSGKTAAFC 200 (448)
Q Consensus 145 ~~f~~l~L~~~l~~~l~~~~~~~pt~~Q~~~i~~i---~~g~d~lv~a~TGsGKT~~~~ 200 (448)
.+++++-.++..++.+... .-+.. ..++-+++.+|+|+|||+.+.
T Consensus 81 ~~ldel~~~~~ki~~l~~~-----------l~~~~~~~~~~~illL~GP~GsGKTTl~~ 128 (637)
T TIGR00602 81 ETQHELAVHKKKIEEVETW-----------LKAQVLENAPKRILLITGPSGCGKSTTIK 128 (637)
T ss_pred CCHHHhcCcHHHHHHHHHH-----------HHhcccccCCCcEEEEECCCCCCHHHHHH
Confidence 3567777777666554432 11111 123448999999999999643
No 450
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=88.16 E-value=3 Score=43.29 Aligned_cols=70 Identities=14% Similarity=0.261 Sum_probs=52.6
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHH---Hhc-CccEEEeChHHHHHHHhcccccCCCee
Q 013173 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRE---LER-GVDILVATPGRLVDLLERARVSLQMIR 299 (448)
Q Consensus 224 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~~-~~~Ilv~Tp~~l~~~l~~~~~~l~~v~ 299 (448)
.++||.|+++.-|..+++.+.+. ++.+..++|+.+..+.... +.. ..+|||||- .+. ..+++.+|+
T Consensus 246 ~~~lVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTd-----v~~-rGiDip~v~ 315 (456)
T PRK10590 246 QQVLVFTRTKHGANHLAEQLNKD----GIRSAAIHGNKSQGARTRALADFKSGDIRVLVATD-----IAA-RGLDIEELP 315 (456)
T ss_pred CcEEEEcCcHHHHHHHHHHHHHC----CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcc-----HHh-cCCCcccCC
Confidence 45899999999999999888763 6788889999886555433 333 478999993 333 346888888
Q ss_pred EEEE
Q 013173 300 YLAL 303 (448)
Q Consensus 300 ~lVl 303 (448)
+||.
T Consensus 316 ~VI~ 319 (456)
T PRK10590 316 HVVN 319 (456)
T ss_pred EEEE
Confidence 8874
No 451
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=88.07 E-value=1.6 Score=49.06 Aligned_cols=19 Identities=26% Similarity=0.305 Sum_probs=16.0
Q ss_pred CCCeeEEccCCCCccchhh
Q 013173 182 GRDLMACAQTGSGKTAAFC 200 (448)
Q Consensus 182 g~d~lv~a~TGsGKT~~~~ 200 (448)
..+.++.+++|+|||....
T Consensus 194 ~~n~lL~G~pGvGKT~l~~ 212 (852)
T TIGR03346 194 KNNPVLIGEPGVGKTAIVE 212 (852)
T ss_pred CCceEEEcCCCCCHHHHHH
Confidence 3589999999999998654
No 452
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=88.04 E-value=3.2 Score=40.87 Aligned_cols=58 Identities=10% Similarity=0.066 Sum_probs=30.0
Q ss_pred HHHHHhcccccCCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccC
Q 013173 284 LVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATF 342 (448)
Q Consensus 284 l~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~ 342 (448)
|+..+..+...-+.--++|+||+|..........+..++..-... ...+-++++|.-+
T Consensus 124 lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~-r~Piciig~Ttrl 181 (408)
T KOG2228|consen 124 LLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSA-RAPICIIGVTTRL 181 (408)
T ss_pred HHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhc-CCCeEEEEeeccc
Confidence 444555443333334578999999776655444444444433211 2234455555543
No 453
>PTZ00110 helicase; Provisional
Probab=87.87 E-value=9.7 Score=40.59 Aligned_cols=73 Identities=15% Similarity=0.175 Sum_probs=53.9
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHH---HHhc-CccEEEeChHHHHHHHhcccccCCC
Q 013173 222 VYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLR---ELER-GVDILVATPGRLVDLLERARVSLQM 297 (448)
Q Consensus 222 ~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~~-~~~Ilv~Tp~~l~~~l~~~~~~l~~ 297 (448)
...++||.|+|+.-|..++..++. .++.+..++|+....+... .+.. ...|||||. .+. ..+++.+
T Consensus 376 ~~~k~LIF~~t~~~a~~l~~~L~~----~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTd-----v~~-rGIDi~~ 445 (545)
T PTZ00110 376 DGDKILIFVETKKGADFLTKELRL----DGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATD-----VAS-RGLDVKD 445 (545)
T ss_pred cCCeEEEEecChHHHHHHHHHHHH----cCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcc-----hhh-cCCCccc
Confidence 356899999999999999888875 3567888899887655433 3333 378999993 333 3468889
Q ss_pred eeEEEEc
Q 013173 298 IRYLALD 304 (448)
Q Consensus 298 v~~lVlD 304 (448)
|++||.=
T Consensus 446 v~~VI~~ 452 (545)
T PTZ00110 446 VKYVINF 452 (545)
T ss_pred CCEEEEe
Confidence 9988853
No 454
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=87.86 E-value=5.1 Score=35.73 Aligned_cols=53 Identities=19% Similarity=0.302 Sum_probs=32.4
Q ss_pred CCCeeEEEEcCCcccccCCCH--HHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHH
Q 013173 295 LQMIRYLALDEADRMLDMGFE--PQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLAS 351 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~--~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~ 351 (448)
-...++|||||+=..++.++. +++..+++.. |...-+|+.--..|+++.+.+.
T Consensus 94 ~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~r----p~~~evVlTGR~~~~~l~e~AD 148 (172)
T PF02572_consen 94 SGEYDLVILDEINYAVDYGLLSEEEVLDLLENR----PESLEVVLTGRNAPEELIEAAD 148 (172)
T ss_dssp -TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-----TT-EEEEE-SS--HHHHHH-S
T ss_pred CCCCCEEEEcchHHHhHCCCccHHHHHHHHHcC----CCCeEEEEECCCCCHHHHHhCC
Confidence 466889999999988888863 3455555543 5566677777777888877664
No 455
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=87.84 E-value=2.3 Score=43.03 Aligned_cols=30 Identities=20% Similarity=0.206 Sum_probs=21.9
Q ss_pred CHHHHhHHhhH---hCCCCeeEEccCCCCccch
Q 013173 169 TPVQRHAIPIS---IGGRDLMACAQTGSGKTAA 198 (448)
Q Consensus 169 t~~Q~~~i~~i---~~g~d~lv~a~TGsGKT~~ 198 (448)
.++=..+|..+ -.|+-.++.|+.|+|||+.
T Consensus 153 ~~~~~rvID~l~PIGkGQR~lIvgppGvGKTTL 185 (416)
T PRK09376 153 EDLSTRIIDLIAPIGKGQRGLIVAPPKAGKTVL 185 (416)
T ss_pred cccceeeeeeecccccCceEEEeCCCCCChhHH
Confidence 44444555543 3788999999999999974
No 456
>PRK08840 replicative DNA helicase; Provisional
Probab=87.84 E-value=2.7 Score=43.74 Aligned_cols=49 Identities=10% Similarity=0.053 Sum_probs=27.3
Q ss_pred CeeEEEEcCCcccccCC----CHHHHHHHHHHcCCCC-CCCcEEEEEeccCchHH
Q 013173 297 MIRYLALDEADRMLDMG----FEPQIRKIVQQMDMPP-PGMRQTMLFSATFPKEI 346 (448)
Q Consensus 297 ~v~~lVlDEah~ll~~g----f~~~i~~i~~~l~~~~-~~~~q~i~~SAT~~~~v 346 (448)
.+++||||-.+.|...+ ....+..|...|+... ..++.++++|- ++..+
T Consensus 329 ~~~lvvIDYLql~~~~~~~~~r~~ei~~isr~LK~lAkel~ipVi~LsQ-LnR~~ 382 (464)
T PRK08840 329 GLSMIMVDYLQLMRVPALSDNRTLEIAEISRSLKALAKELNVPVVALSQ-LNRSL 382 (464)
T ss_pred CCCEEEEccHHhcCCCCCCCchHHHHHHHHHHHHHHHHHhCCeEEEEEe-cCccc
Confidence 58899999999874222 2234555554442221 12455677663 44443
No 457
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=87.84 E-value=3.8 Score=40.32 Aligned_cols=50 Identities=12% Similarity=0.301 Sum_probs=30.7
Q ss_pred HHHHHhcccccCCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEec
Q 013173 284 LVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSA 340 (448)
Q Consensus 284 l~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SA 340 (448)
+.+.+....+ ...-+++|||+||.|.. ..-..+++.+..|+ ...+|++|.
T Consensus 112 i~~~l~~~p~-~~~~kVvII~~ae~m~~----~aaNaLLK~LEEPp--~~~fILi~~ 161 (314)
T PRK07399 112 IKRFLSRPPL-EAPRKVVVIEDAETMNE----AAANALLKTLEEPG--NGTLILIAP 161 (314)
T ss_pred HHHHHccCcc-cCCceEEEEEchhhcCH----HHHHHHHHHHhCCC--CCeEEEEEC
Confidence 4444443333 35678999999999855 44556666666664 344554443
No 458
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=87.79 E-value=0.83 Score=49.17 Aligned_cols=49 Identities=16% Similarity=0.219 Sum_probs=37.8
Q ss_pred CCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013173 183 RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF 246 (448)
Q Consensus 183 ~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~ 246 (448)
.++++.||||||||..+.+|-+-.. . .-+||+=|.-|+...+...-++.
T Consensus 212 ~H~lv~ApTgsGKgvg~VIPnLL~~--~-------------gS~VV~DpKgE~~~~Ta~~R~~~ 260 (623)
T TIGR02767 212 THMIFFAGSGGFKTTSVVVPTALKY--G-------------GPLVCLDPSTEVAPMVCEHRRQA 260 (623)
T ss_pred ceEEEEeCCCCCccceeehhhhhcC--C-------------CCEEEEEChHHHHHHHHHHHHHc
Confidence 6899999999999999999965322 1 12888889999987776655554
No 459
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=87.78 E-value=3.8 Score=40.47 Aligned_cols=110 Identities=17% Similarity=0.084 Sum_probs=48.8
Q ss_pred eEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHH----HHHHHHhccc-CCcEEEEEECC
Q 013173 186 MACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQI----HVEAKKFSYQ-TGVKVVVAYGG 260 (448)
Q Consensus 186 lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi----~~~~~~~~~~-~~~~~~~~~gg 260 (448)
++.++-|+|||.+..+-++..++.... ...++++ +|..-+..+ ...+..+... ..+........
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~----------~~~vi~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPP----------GRRVIIA-STYRQARDIFGRFWKGIIELLPSWFEIKFNEWNDR 69 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS------------EEEEE-ESSHHHHHHHHHHHHHHHHTS-TTTS--EEEE-SS
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCC----------CcEEEEe-cCHHHHHHHHHHhHHHHHHHHHHhcCcccccCCCC
Confidence 467889999999988877776654331 1235555 555554442 2233333322 11221110111
Q ss_pred CChHHHHHHHhcCccEEEeChHHH--HHHHhcccccCCCeeEEEEcCCcccccCCCHHH
Q 013173 261 APINQQLRELERGVDILVATPGRL--VDLLERARVSLQMIRYLALDEADRMLDMGFEPQ 317 (448)
Q Consensus 261 ~~~~~~~~~l~~~~~Ilv~Tp~~l--~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~ 317 (448)
.-. +.++..|.+.+-+.- ..-+ .-..+.++++||+-.+.+.-+...
T Consensus 70 ~~~------~~nG~~i~~~~~~~~~~~~~~-----~G~~~~~i~iDE~~~~~~~~~~~~ 117 (384)
T PF03237_consen 70 KII------LPNGSRIQFRGADSPDSGDNI-----RGFEYDLIIIDEAAKVPDDAFSEL 117 (384)
T ss_dssp EEE------ETTS-EEEEES-----SHHHH-----HTS--SEEEEESGGGSTTHHHHHH
T ss_pred cEE------ecCceEEEEeccccccccccc-----cccccceeeeeecccCchHHHHHH
Confidence 000 034455555553211 1111 125677899999987765333333
No 460
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=87.72 E-value=5.4 Score=39.31 Aligned_cols=41 Identities=17% Similarity=0.312 Sum_probs=26.6
Q ss_pred CCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEecc
Q 013173 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSAT 341 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT 341 (448)
....+++|||+||+|.. ..-..+++.+..|+ ... ++++.++
T Consensus 106 ~~~~kV~iI~~ae~m~~----~AaNaLLKtLEEPp-~~t-~fiL~t~ 146 (319)
T PRK06090 106 LNGYRLFVIEPADAMNE----SASNALLKTLEEPA-PNC-LFLLVTH 146 (319)
T ss_pred cCCceEEEecchhhhCH----HHHHHHHHHhcCCC-CCe-EEEEEEC
Confidence 45678999999999965 44556666776654 334 3444444
No 461
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=87.69 E-value=4.4 Score=36.96 Aligned_cols=51 Identities=16% Similarity=0.120 Sum_probs=33.5
Q ss_pred CCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHH
Q 013173 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEI 346 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v 346 (448)
+.+-+++++||...-++......+..++..+... ....+++++|.--...+
T Consensus 129 ~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~-~~~~~~iii~th~~~~i 179 (198)
T cd03276 129 VMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKK-QPGRQFIFITPQDISGL 179 (198)
T ss_pred ccCCCEEEecCcccccCHHHHHHHHHHHHHHHhc-CCCcEEEEEECCccccc
Confidence 4677899999999999977666676666554110 01346777776544443
No 462
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=87.59 E-value=4.9 Score=44.47 Aligned_cols=19 Identities=26% Similarity=0.303 Sum_probs=16.2
Q ss_pred CCCeeEEccCCCCccchhh
Q 013173 182 GRDLMACAQTGSGKTAAFC 200 (448)
Q Consensus 182 g~d~lv~a~TGsGKT~~~~ 200 (448)
..++++.+++|+|||....
T Consensus 203 ~~n~lL~G~pG~GKT~l~~ 221 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAE 221 (731)
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 3589999999999999653
No 463
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=87.58 E-value=1.6 Score=44.47 Aligned_cols=49 Identities=22% Similarity=0.352 Sum_probs=31.3
Q ss_pred CCHHHHHHHHHCCCCC--CCHHHH-----hHHhhHhCCCCeeEEccCCCCccchhh
Q 013173 152 LGEALNLNIRRCKYVK--PTPVQR-----HAIPISIGGRDLMACAQTGSGKTAAFC 200 (448)
Q Consensus 152 L~~~l~~~l~~~~~~~--pt~~Q~-----~~i~~i~~g~d~lv~a~TGsGKT~~~~ 200 (448)
..+++---|...||.- ++.-|+ ..+|.+..+.|++..+|+|+|||-.|.
T Consensus 172 ~dEWid~LlrSiG~~P~~~~~r~k~~~L~rl~~fve~~~Nli~lGp~GTGKThla~ 227 (449)
T TIGR02688 172 LEEWIDVLIRSIGYEPEGFEARQKLLLLARLLPLVEPNYNLIELGPKGTGKSYIYN 227 (449)
T ss_pred HHHHHHHHHHhcCCCcccCChHHHHHHHHhhHHHHhcCCcEEEECCCCCCHHHHHH
Confidence 3344444455667642 333222 123666788999999999999997654
No 464
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=87.53 E-value=1.3 Score=45.58 Aligned_cols=143 Identities=13% Similarity=0.073 Sum_probs=65.7
Q ss_pred CCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECC
Q 013173 181 GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGG 260 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg 260 (448)
.|.=+++.|++|+|||+..+--+.+.....+ -.+++++ .-.-..|+...+..... ++....+..|
T Consensus 194 ~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g------------~~vl~~S-lEm~~~~i~~R~~~~~~--~v~~~~~~~g 258 (434)
T TIGR00665 194 PSDLIILAARPSMGKTAFALNIAENAAIKEG------------KPVAFFS-LEMSAEQLAMRMLSSES--RVDSQKLRTG 258 (434)
T ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCC------------CeEEEEe-CcCCHHHHHHHHHHHhc--CCCHHHhccC
Confidence 3455889999999999865443433332211 1255554 22333444444433221 2221111122
Q ss_pred -CChHHH------HHHHhcCccEEE-e----ChHHHHHHHhcccccCCCeeEEEEcCCcccccCC----CHHHHHHHHHH
Q 013173 261 -APINQQ------LRELERGVDILV-A----TPGRLVDLLERARVSLQMIRYLALDEADRMLDMG----FEPQIRKIVQQ 324 (448)
Q Consensus 261 -~~~~~~------~~~l~~~~~Ilv-~----Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~g----f~~~i~~i~~~ 324 (448)
....+. ...+.+. .+.| . |+..+...+...... ..+++||||=.+.|...+ ....+..|...
T Consensus 259 ~l~~~~~~~~~~a~~~l~~~-~l~i~d~~~~~~~~i~~~i~~~~~~-~~~~~vvID~l~~i~~~~~~~~r~~~i~~i~~~ 336 (434)
T TIGR00665 259 KLSDEDWEKLTSAAGKLSEA-PLYIDDTPGLTITELRAKARRLKRE-HGLGLIVIDYLQLMSGSGRSENRQQEVSEISRS 336 (434)
T ss_pred CCCHHHHHHHHHHHHHHhcC-CEEEECCCCCCHHHHHHHHHHHHHh-cCCCEEEEcchHhcCCCCCCCCHHHHHHHHHHH
Confidence 222111 1223332 3444 2 444555444332222 347899999998774322 22345555554
Q ss_pred cCCCC-CCCcEEEEEec
Q 013173 325 MDMPP-PGMRQTMLFSA 340 (448)
Q Consensus 325 l~~~~-~~~~q~i~~SA 340 (448)
|+... ..++.++++|-
T Consensus 337 Lk~lA~e~~i~vi~lsq 353 (434)
T TIGR00665 337 LKALAKELNVPVIALSQ 353 (434)
T ss_pred HHHHHHHhCCeEEEEec
Confidence 42111 12354666554
No 465
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=87.47 E-value=1.5 Score=48.59 Aligned_cols=17 Identities=24% Similarity=0.423 Sum_probs=14.7
Q ss_pred CCeeEEccCCCCccchh
Q 013173 183 RDLMACAQTGSGKTAAF 199 (448)
Q Consensus 183 ~d~lv~a~TGsGKT~~~ 199 (448)
+.+++.+|+|||||+..
T Consensus 488 ~giLL~GppGtGKT~la 504 (733)
T TIGR01243 488 KGVLLFGPPGTGKTLLA 504 (733)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 56899999999999854
No 466
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=87.46 E-value=1.8 Score=42.23 Aligned_cols=114 Identities=20% Similarity=0.323 Sum_probs=63.8
Q ss_pred CCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEE-c-----------CcHHHHHHHHHHHHHhcc
Q 013173 181 GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALIL-A-----------PTRELSSQIHVEAKKFSY 248 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil-~-----------PtreL~~qi~~~~~~~~~ 248 (448)
-+|=+++.+|.|+|||.. +-.+-+++.-.- ...+++..+| . -+--|+.++++.+..+..
T Consensus 176 ~NRliLlhGPPGTGKTSL-CKaLaQkLSIR~--------~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~ 246 (423)
T KOG0744|consen 176 WNRLILLHGPPGTGKTSL-CKALAQKLSIRT--------NDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVE 246 (423)
T ss_pred eeeEEEEeCCCCCChhHH-HHHHHHhheeee--------cCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHh
Confidence 456689999999999973 223333332111 1122222222 2 233477778888888777
Q ss_pred cCCcEEEEEECCC---------------C---------hHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEc
Q 013173 249 QTGVKVVVAYGGA---------------P---------INQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALD 304 (448)
Q Consensus 249 ~~~~~~~~~~gg~---------------~---------~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlD 304 (448)
..+.=|++++... + .-.|+..+.+.++|+|-|...|.+-++ .-.||
T Consensus 247 d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~siD----------~AfVD 316 (423)
T KOG0744|consen 247 DRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDSID----------VAFVD 316 (423)
T ss_pred CCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHHHH----------HHhhh
Confidence 6666666665421 1 112445555667787777666655444 34567
Q ss_pred CCcccccCC
Q 013173 305 EADRMLDMG 313 (448)
Q Consensus 305 Eah~ll~~g 313 (448)
-||-..-.|
T Consensus 317 RADi~~yVG 325 (423)
T KOG0744|consen 317 RADIVFYVG 325 (423)
T ss_pred HhhheeecC
Confidence 777554444
No 467
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=87.45 E-value=3.2 Score=43.87 Aligned_cols=68 Identities=22% Similarity=0.335 Sum_probs=52.8
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHHh---c-CccEEEeChHHHHHHHhcccccCCCeeE
Q 013173 225 LALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELE---R-GVDILVATPGRLVDLLERARVSLQMIRY 300 (448)
Q Consensus 225 ~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~---~-~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~ 300 (448)
++||.|.|+..|..++..+.+. ++++..++|+.+.....+.+. + ..+|||||- .. ...+++.+|.+
T Consensus 275 ~~IVF~~tk~~~~~l~~~l~~~----g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTD-----va-aRGiDi~~v~~ 344 (513)
T COG0513 275 RVIVFVRTKRLVEELAESLRKR----GFKVAALHGDLPQEERDRALEKFKDGELRVLVATD-----VA-ARGLDIPDVSH 344 (513)
T ss_pred eEEEEeCcHHHHHHHHHHHHHC----CCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEec-----hh-hccCCccccce
Confidence 5999999999999988888874 689999999998766554443 2 489999993 22 33467888888
Q ss_pred EE
Q 013173 301 LA 302 (448)
Q Consensus 301 lV 302 (448)
||
T Consensus 345 Vi 346 (513)
T COG0513 345 VI 346 (513)
T ss_pred eE
Confidence 85
No 468
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=87.43 E-value=3 Score=37.51 Aligned_cols=56 Identities=20% Similarity=0.294 Sum_probs=37.0
Q ss_pred CCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhh
Q 013173 296 QMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDF 353 (448)
Q Consensus 296 ~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~ 353 (448)
...++|||||.-..+..++. .+..++..++.. |...-+|+.--..|+++.+++...
T Consensus 121 ~~ydlviLDEl~~al~~g~l-~~eeV~~~l~~k-P~~~~vIiTGr~ap~~lie~ADlV 176 (198)
T COG2109 121 GKYDLVILDELNYALRYGLL-PLEEVVALLKAR-PEHTHVIITGRGAPPELIELADLV 176 (198)
T ss_pred CCCCEEEEehhhHHHHcCCC-CHHHHHHHHhcC-CCCcEEEEECCCCCHHHHHHHHHH
Confidence 35788999999999888853 244455544432 445555555555788888777643
No 469
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=87.40 E-value=0.52 Score=42.50 Aligned_cols=33 Identities=24% Similarity=0.455 Sum_probs=25.8
Q ss_pred CCCHHHHhHHhhHh-CCCCeeEEccCCCCccchh
Q 013173 167 KPTPVQRHAIPISI-GGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~-~g~d~lv~a~TGsGKT~~~ 199 (448)
..++-|...+.... .+..++++++||||||+..
T Consensus 9 ~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 9 TFSPLQAAYLWLAVEARKNILISGGTGSGKTTLL 42 (186)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 45666777776554 6889999999999999853
No 470
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=87.24 E-value=0.19 Score=52.81 Aligned_cols=7 Identities=29% Similarity=0.866 Sum_probs=2.0
Q ss_pred ccccchh
Q 013173 4 SWADSVS 10 (448)
Q Consensus 4 ~~~~~~~ 10 (448)
||.---+
T Consensus 460 SWk~~~~ 466 (556)
T PF05918_consen 460 SWKEAKK 466 (556)
T ss_dssp TTS----
T ss_pred eeeeccc
Confidence 6765333
No 471
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=87.09 E-value=0.59 Score=40.71 Aligned_cols=49 Identities=16% Similarity=0.190 Sum_probs=32.4
Q ss_pred CCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHH
Q 013173 296 QMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQR 348 (448)
Q Consensus 296 ~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~ 348 (448)
...+++++||...-+|......+..++..+. ...++++++.--...+..
T Consensus 97 ~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~----~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 97 LNPDLLLLDEPTSGLDPASRERLLELLRELA----EEGRTVIIVTHDPELAEL 145 (157)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH----HCCCEEEEEeCCHHHHHH
Confidence 4468899999999998776777777777662 212355555554444443
No 472
>PF05729 NACHT: NACHT domain
Probab=87.05 E-value=6.9 Score=33.61 Aligned_cols=16 Identities=31% Similarity=0.484 Sum_probs=13.8
Q ss_pred CeeEEccCCCCccchh
Q 013173 184 DLMACAQTGSGKTAAF 199 (448)
Q Consensus 184 d~lv~a~TGsGKT~~~ 199 (448)
-+++.++.|+|||+..
T Consensus 2 ~l~I~G~~G~GKStll 17 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLL 17 (166)
T ss_pred EEEEECCCCCChHHHH
Confidence 4789999999999954
No 473
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=86.98 E-value=1.1 Score=44.28 Aligned_cols=18 Identities=22% Similarity=0.289 Sum_probs=15.5
Q ss_pred CCeeEEccCCCCccchhh
Q 013173 183 RDLMACAQTGSGKTAAFC 200 (448)
Q Consensus 183 ~d~lv~a~TGsGKT~~~~ 200 (448)
.++++.+|+|+|||....
T Consensus 52 ~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CcEEEECCCCccHHHHHH
Confidence 579999999999999643
No 474
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=86.91 E-value=0.42 Score=51.37 Aligned_cols=31 Identities=29% Similarity=0.296 Sum_probs=23.8
Q ss_pred CCCeeEEEEcCCcccccCCCHHHHHHHHHHc
Q 013173 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQM 325 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l 325 (448)
+++-+++|+||+---+|..-+..+.+.+..+
T Consensus 501 l~~~~IliLDE~TSaLD~~te~~i~~~l~~~ 531 (588)
T PRK11174 501 LQPCQLLLLDEPTASLDAHSEQLVMQALNAA 531 (588)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence 5667889999999888876666666666655
No 475
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=86.90 E-value=2.1 Score=39.10 Aligned_cols=50 Identities=28% Similarity=0.274 Sum_probs=32.8
Q ss_pred CCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHH
Q 013173 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQR 348 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~ 348 (448)
+.+-+++++||--.-+|......+..++..+.. ... +++++.--...+..
T Consensus 142 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~-tii~~tH~~~~~~~ 191 (208)
T cd03268 142 LGNPDLLILDEPTNGLDPDGIKELRELILSLRD---QGI-TVLISSHLLSEIQK 191 (208)
T ss_pred hcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH---CCC-EEEEEcCCHHHHHH
Confidence 456789999999999998777777777776621 122 55555443333333
No 476
>PRK13764 ATPase; Provisional
Probab=86.79 E-value=0.95 Score=48.38 Aligned_cols=26 Identities=12% Similarity=0.190 Sum_probs=19.4
Q ss_pred CCCCeeEEccCCCCccchhhhhHHHHH
Q 013173 181 GGRDLMACAQTGSGKTAAFCFPIISGI 207 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~~lpil~~l 207 (448)
..++++++++||||||+.. -.++..+
T Consensus 256 ~~~~ILIsG~TGSGKTTll-~AL~~~i 281 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFA-QALAEFY 281 (602)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHH
Confidence 4678999999999999853 3344444
No 477
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=86.77 E-value=0.4 Score=46.55 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=20.5
Q ss_pred CCCCeeEEccCCCCccchhhhhHHHHHhh
Q 013173 181 GGRDLMACAQTGSGKTAAFCFPIISGIMR 209 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~~lpil~~l~~ 209 (448)
...|+++.+|||||||+.+. .|.+++.
T Consensus 96 ~KSNILLiGPTGsGKTlLAq--TLAk~Ln 122 (408)
T COG1219 96 SKSNILLIGPTGSGKTLLAQ--TLAKILN 122 (408)
T ss_pred eeccEEEECCCCCcHHHHHH--HHHHHhC
Confidence 45689999999999999654 4555554
No 478
>PRK08006 replicative DNA helicase; Provisional
Probab=86.76 E-value=4 Score=42.56 Aligned_cols=149 Identities=13% Similarity=0.050 Sum_probs=69.5
Q ss_pred CCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEE-ECC
Q 013173 182 GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVA-YGG 260 (448)
Q Consensus 182 g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~-~gg 260 (448)
|.=+++.|.+|.|||...+--+.+...+.+ -.++|++. -.-..|+...+-... .++....+ .+.
T Consensus 224 G~LiiIaarPgmGKTafalnia~~~a~~~g------------~~V~~fSl-EM~~~ql~~Rlla~~--~~v~~~~i~~~~ 288 (471)
T PRK08006 224 SDLIIVAARPSMGKTTFAMNLCENAAMLQD------------KPVLIFSL-EMPGEQIMMRMLASL--SRVDQTRIRTGQ 288 (471)
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhcC------------CeEEEEec-cCCHHHHHHHHHHHh--cCCCHHHhhcCC
Confidence 444788999999999865544443332211 12555541 122333333332211 12221111 232
Q ss_pred CChHHHH------HHHhcCccEEEe-----ChHHHHHHHhcccccCCCeeEEEEcCCcccccC----CCHHHHHHHHHHc
Q 013173 261 APINQQL------RELERGVDILVA-----TPGRLVDLLERARVSLQMIRYLALDEADRMLDM----GFEPQIRKIVQQM 325 (448)
Q Consensus 261 ~~~~~~~------~~l~~~~~Ilv~-----Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~----gf~~~i~~i~~~l 325 (448)
.+..++. ..+.....+.|- |+..+...+.+.......+++||||=.+.|-.. .....+..|...|
T Consensus 289 l~~~e~~~~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~L 368 (471)
T PRK08006 289 LDDEDWARISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMRVPSLSDNRTLEIAEISRSL 368 (471)
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHccCCCCCCCcHHHHHHHHHHH
Confidence 2322221 122122345543 444454444332222236899999999987422 2334556665555
Q ss_pred CCCC-CCCcEEEEEeccCchHH
Q 013173 326 DMPP-PGMRQTMLFSATFPKEI 346 (448)
Q Consensus 326 ~~~~-~~~~q~i~~SAT~~~~v 346 (448)
+... ..++.+|++|- ++..+
T Consensus 369 K~lAkel~ipVi~LsQ-LnR~~ 389 (471)
T PRK08006 369 KALAKELQVPVVALSQ-LNRSL 389 (471)
T ss_pred HHHHHHhCCeEEEEEe-cCccc
Confidence 2221 13456777774 44443
No 479
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=86.71 E-value=6.3 Score=44.88 Aligned_cols=132 Identities=11% Similarity=0.094 Sum_probs=90.8
Q ss_pred HHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHh--hhhcccCCC------------------CCCCCCceEEEEc
Q 013173 171 VQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIM--REQYVQRPR------------------GSRTVYPLALILA 230 (448)
Q Consensus 171 ~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~--~~~~~~~~~------------------~~~~~~~~~lil~ 230 (448)
-|++.+..+...=||+-...|=-=.|+-..+.=+..+. ..++..+.. ..-..+.++.+|.
T Consensus 731 k~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~pV~T~V~~~d~~~ireAI~REl~RgGQvfYv~ 810 (1139)
T COG1197 731 KHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLPVKTFVSEYDDLLIREAILRELLRGGQVFYVH 810 (1139)
T ss_pred cHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcceEEEEecCChHHHHHHHHHHHhcCCEEEEEe
Confidence 37888888777778887777766666643332221111 111111000 0123467899999
Q ss_pred CcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHH----hcCccEEEeChHHHHHHHhcccccCCCeeEEEEcCC
Q 013173 231 PTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLREL----ERGVDILVATPGRLVDLLERARVSLQMIRYLALDEA 306 (448)
Q Consensus 231 PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEa 306 (448)
|..+-..++.+.++.+. +..++.+.+|-+...+..+.+ ....||||||. +-...++..+...+||+-|
T Consensus 811 NrV~~Ie~~~~~L~~LV--PEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TT------IIEtGIDIPnANTiIIe~A 882 (1139)
T COG1197 811 NRVESIEKKAERLRELV--PEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTT------IIETGIDIPNANTIIIERA 882 (1139)
T ss_pred cchhhHHHHHHHHHHhC--CceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEee------eeecCcCCCCCceEEEecc
Confidence 99999999999999986 457899999999876654433 33689999995 3345678999999999999
Q ss_pred cccc
Q 013173 307 DRML 310 (448)
Q Consensus 307 h~ll 310 (448)
|+|.
T Consensus 883 D~fG 886 (1139)
T COG1197 883 DKFG 886 (1139)
T ss_pred cccc
Confidence 9873
No 480
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=86.60 E-value=7 Score=39.14 Aligned_cols=46 Identities=20% Similarity=0.260 Sum_probs=31.9
Q ss_pred CCeeEEEEcCCcccccCC--CHHHHHHHHHHcCCCCCCCcEEEEEeccCchH
Q 013173 296 QMIRYLALDEADRMLDMG--FEPQIRKIVQQMDMPPPGMRQTMLFSATFPKE 345 (448)
Q Consensus 296 ~~v~~lVlDEah~ll~~g--f~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~ 345 (448)
..--++|+|-||.+-|++ ..+.+.++-+.+ +...-.|+||++..+.
T Consensus 114 d~~~~liLDnad~lrD~~a~ll~~l~~L~el~----~~~~i~iils~~~~e~ 161 (438)
T KOG2543|consen 114 DQKVFLILDNADALRDMDAILLQCLFRLYELL----NEPTIVIILSAPSCEK 161 (438)
T ss_pred CceEEEEEcCHHhhhccchHHHHHHHHHHHHh----CCCceEEEEeccccHH
Confidence 456689999999998887 334455555555 3334578899997765
No 481
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=86.52 E-value=2.6 Score=46.59 Aligned_cols=18 Identities=22% Similarity=0.388 Sum_probs=15.8
Q ss_pred CCCCeeEEccCCCCccch
Q 013173 181 GGRDLMACAQTGSGKTAA 198 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~ 198 (448)
.++.+++.+|+|+|||+.
T Consensus 211 ~~~giLL~GppGtGKT~l 228 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLL 228 (733)
T ss_pred CCceEEEECCCCCChHHH
Confidence 457899999999999985
No 482
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=86.45 E-value=3.1 Score=43.39 Aligned_cols=74 Identities=16% Similarity=0.249 Sum_probs=55.2
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHH---h-cCccEEEeChHHHHHHHhcccccCCCee
Q 013173 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLREL---E-RGVDILVATPGRLVDLLERARVSLQMIR 299 (448)
Q Consensus 224 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~-~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~ 299 (448)
..+||.|+|+..|.++++.+++. ++.+..++++.+..+....+ . ..++|||||- .+ ...+++.+|+
T Consensus 227 ~~~IIF~~s~~~~e~la~~L~~~----g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~-----~~-~~GID~p~V~ 296 (470)
T TIGR00614 227 KSGIIYCPSRKKSEQVTASLQNL----GIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATV-----AF-GMGINKPDVR 296 (470)
T ss_pred CceEEEECcHHHHHHHHHHHHhc----CCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEec-----hh-hccCCcccce
Confidence 34799999999999999998874 67888899998866554332 2 3489999994 12 2356888999
Q ss_pred EEEEcCCc
Q 013173 300 YLALDEAD 307 (448)
Q Consensus 300 ~lVlDEah 307 (448)
+||.-..-
T Consensus 297 ~VI~~~~P 304 (470)
T TIGR00614 297 FVIHYSLP 304 (470)
T ss_pred EEEEeCCC
Confidence 99866543
No 483
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=86.39 E-value=0.73 Score=49.23 Aligned_cols=37 Identities=24% Similarity=0.366 Sum_probs=23.2
Q ss_pred HHHHhHHhhHhC--CCCeeEEccCCCCccchhhhhHHHHH
Q 013173 170 PVQRHAIPISIG--GRDLMACAQTGSGKTAAFCFPIISGI 207 (448)
Q Consensus 170 ~~Q~~~i~~i~~--g~d~lv~a~TGsGKT~~~~lpil~~l 207 (448)
+-|...+..++. .--+++++|||||||+.. -.++..+
T Consensus 302 ~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl-~a~l~~~ 340 (564)
T TIGR02538 302 PDQKALFLEAIHKPQGMVLVTGPTGSGKTVSL-YTALNIL 340 (564)
T ss_pred HHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHHhh
Confidence 344444444433 345889999999999863 3455544
No 484
>PHA00012 I assembly protein
Probab=86.26 E-value=13 Score=36.67 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=17.4
Q ss_pred eeEEccCCCCccchhhhhHHHHH
Q 013173 185 LMACAQTGSGKTAAFCFPIISGI 207 (448)
Q Consensus 185 ~lv~a~TGsGKT~~~~lpil~~l 207 (448)
-++.+..|+|||+...--|+..+
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L 26 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKL 26 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHH
Confidence 47899999999998766454444
No 485
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=86.22 E-value=3.1 Score=45.40 Aligned_cols=65 Identities=23% Similarity=0.297 Sum_probs=41.1
Q ss_pred hHHHHHHHhcccccCCCeeEEEEcCCcccccC--C---------CHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHH
Q 013173 281 PGRLVDLLERARVSLQMIRYLALDEADRMLDM--G---------FEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQR 348 (448)
Q Consensus 281 p~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~--g---------f~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~ 348 (448)
+.++.++....+- .--+++.+||+|.+... | .+..+..++-.++..... ..+|++-||.-.++.+
T Consensus 389 asrvr~lf~~ar~--~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~-~~vi~~a~tnr~d~ld 464 (774)
T KOG0731|consen 389 ASRVRDLFPLARK--NAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS-KGVIVLAATNRPDILD 464 (774)
T ss_pred hHHHHHHHHHhhc--cCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC-CcEEEEeccCCccccC
Confidence 6667777665442 23456899999977421 1 234566666666655433 6689999997666543
No 486
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=86.01 E-value=5.8 Score=38.15 Aligned_cols=16 Identities=19% Similarity=0.239 Sum_probs=14.7
Q ss_pred CCeeEEccCCCCccch
Q 013173 183 RDLMACAQTGSGKTAA 198 (448)
Q Consensus 183 ~d~lv~a~TGsGKT~~ 198 (448)
+++++.+++|+|||+.
T Consensus 112 ~~~~i~g~~g~GKttl 127 (270)
T TIGR02858 112 LNTLIISPPQCGKTTL 127 (270)
T ss_pred eEEEEEcCCCCCHHHH
Confidence 6899999999999994
No 487
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=85.99 E-value=1.6 Score=49.04 Aligned_cols=28 Identities=25% Similarity=0.331 Sum_probs=20.2
Q ss_pred HHhHHhhHh----C--CCCeeEEccCCCCccchh
Q 013173 172 QRHAIPISI----G--GRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 172 Q~~~i~~i~----~--g~d~lv~a~TGsGKT~~~ 199 (448)
|.+-|..++ . ..++++.++.|+|||+..
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~ 225 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVV 225 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHH
Confidence 555554433 2 357999999999999964
No 488
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=85.89 E-value=4.4 Score=42.05 Aligned_cols=72 Identities=13% Similarity=0.172 Sum_probs=54.1
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHH---hc-CccEEEeChHHHHHHHhcccccCCCeeE
Q 013173 225 LALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLREL---ER-GVDILVATPGRLVDLLERARVSLQMIRY 300 (448)
Q Consensus 225 ~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~~-~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~ 300 (448)
.+||.|+|+.-|..+++.+.+. ++.+..++|+.+..+....+ .+ ..+|||||- .+. ..+++.++++
T Consensus 244 ~~lVF~~t~~~~~~l~~~L~~~----~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTd-----v~~-rGiDi~~v~~ 313 (460)
T PRK11776 244 SCVVFCNTKKECQEVADALNAQ----GFSALALHGDLEQRDRDQVLVRFANRSCSVLVATD-----VAA-RGLDIKALEA 313 (460)
T ss_pred ceEEEECCHHHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEec-----ccc-cccchhcCCe
Confidence 4899999999999999988874 67888999998866554433 33 378999993 333 3467888998
Q ss_pred EEEcCC
Q 013173 301 LALDEA 306 (448)
Q Consensus 301 lVlDEa 306 (448)
||.-+.
T Consensus 314 VI~~d~ 319 (460)
T PRK11776 314 VINYEL 319 (460)
T ss_pred EEEecC
Confidence 886544
No 489
>COG4907 Predicted membrane protein [Function unknown]
Probab=85.84 E-value=0.62 Score=46.91 Aligned_cols=26 Identities=31% Similarity=0.307 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC
Q 013173 60 SGPRWGSGSRPDFGRGQGYGSGGRSG 85 (448)
Q Consensus 60 ~~~~~~~~~~~~~~~g~g~g~~~~~~ 85 (448)
++.|++.++||+++.|||.||||||.
T Consensus 569 ~S~~~~~~GGG~G~~gGg~GGGGGGa 594 (595)
T COG4907 569 SSRRSSSSGGGGGFSGGGSGGGGGGA 594 (595)
T ss_pred ccccCCCCCCCCCcCCCCCCCCCCCC
No 490
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=85.81 E-value=2.2 Score=42.29 Aligned_cols=41 Identities=15% Similarity=0.290 Sum_probs=26.9
Q ss_pred CCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEecc
Q 013173 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSAT 341 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT 341 (448)
...-+++||||||+|.. .....+++.+..|+ ....+|+ .++
T Consensus 108 ~~~~kvviI~~a~~~~~----~a~NaLLK~LEEPp-~~~~~Il-~t~ 148 (329)
T PRK08058 108 ESNKKVYIIEHADKMTA----SAANSLLKFLEEPS-GGTTAIL-LTE 148 (329)
T ss_pred ccCceEEEeehHhhhCH----HHHHHHHHHhcCCC-CCceEEE-EeC
Confidence 45678999999999865 44556677776653 4444444 444
No 491
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=85.78 E-value=2.9 Score=37.23 Aligned_cols=31 Identities=29% Similarity=0.231 Sum_probs=25.2
Q ss_pred CCCeeEEEEcCCcccccCCCHHHHHHHHHHc
Q 013173 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQM 325 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l 325 (448)
+.+-+++++||.-.-+|......+..++..+
T Consensus 114 ~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~ 144 (178)
T cd03247 114 LQDAPIVLLDEPTVGLDPITERQLLSLIFEV 144 (178)
T ss_pred hcCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 5667899999999999977777777777766
No 492
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=85.77 E-value=1.1 Score=46.80 Aligned_cols=32 Identities=16% Similarity=0.390 Sum_probs=23.0
Q ss_pred CCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCC
Q 013173 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPP 330 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~ 330 (448)
..+.+..||||+|+|....| ..+++-+..||+
T Consensus 117 ~~ryKVyiIDEvHMLS~~af----NALLKTLEEPP~ 148 (515)
T COG2812 117 EGRYKVYIIDEVHMLSKQAF----NALLKTLEEPPS 148 (515)
T ss_pred cccceEEEEecHHhhhHHHH----HHHhcccccCcc
Confidence 56788999999998877555 455666666543
No 493
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=85.66 E-value=2 Score=48.15 Aligned_cols=15 Identities=27% Similarity=0.481 Sum_probs=13.5
Q ss_pred eeEEccCCCCccchh
Q 013173 185 LMACAQTGSGKTAAF 199 (448)
Q Consensus 185 ~lv~a~TGsGKT~~~ 199 (448)
+++++|||+|||...
T Consensus 599 ~lf~Gp~GvGKT~lA 613 (852)
T TIGR03345 599 FLLVGPSGVGKTETA 613 (852)
T ss_pred EEEECCCCCCHHHHH
Confidence 799999999999864
No 494
>KOG1806 consensus DEAD box containing helicases [Replication, recombination and repair]
Probab=85.62 E-value=1.5 Score=48.65 Aligned_cols=72 Identities=24% Similarity=0.235 Sum_probs=56.7
Q ss_pred CCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q 013173 164 KYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEA 243 (448)
Q Consensus 164 ~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~ 243 (448)
++.++||-|-++|-.-..-.++++.+|+|+|||-...- ++..+.+. ...++++|++.+..-..|.++.+
T Consensus 735 n~v~ft~~qveai~sg~qpgltmvvgppgtgktd~avq-il~~lyhn----------~p~qrTlivthsnqaln~lfeKi 803 (1320)
T KOG1806|consen 735 NQVKFTPTQVEAILSGMQPGLTMVVGPPGTGKTDVAVQ-ILSVLYHN----------SPNQRTLIVTHSNQALNQLFEKI 803 (1320)
T ss_pred chhccCHHHHHHHHhcCCCCceeeecCCCCCCcchhhh-hhhhhhhc----------CCCcceEEEEecccchhHHHHHH
Confidence 55678999999998877888999999999999987654 34444332 34567999999999888888877
Q ss_pred HHh
Q 013173 244 KKF 246 (448)
Q Consensus 244 ~~~ 246 (448)
.+.
T Consensus 804 ~~~ 806 (1320)
T KOG1806|consen 804 MAL 806 (1320)
T ss_pred Hhc
Confidence 764
No 495
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=85.58 E-value=1.7 Score=40.28 Aligned_cols=25 Identities=24% Similarity=0.185 Sum_probs=18.8
Q ss_pred CCCCeeEEccCCCCccchhhhhHHH
Q 013173 181 GGRDLMACAQTGSGKTAAFCFPIIS 205 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~~lpil~ 205 (448)
.|.-+++.+++|+|||...+-.+.+
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~ 46 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVE 46 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3567899999999999865544443
No 496
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=85.55 E-value=8 Score=37.73 Aligned_cols=54 Identities=20% Similarity=0.341 Sum_probs=40.4
Q ss_pred CCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhh
Q 013173 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDF 353 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~ 353 (448)
+.+-+++++||--.-+|......+..++..+. .. .+++++.-...++..++...
T Consensus 149 ~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~----~~-~tiii~sH~l~~~~~~~d~i 202 (301)
T TIGR03522 149 IHDPKVLILDEPTTGLDPNQLVEIRNVIKNIG----KD-KTIILSTHIMQEVEAICDRV 202 (301)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHhc----CC-CEEEEEcCCHHHHHHhCCEE
Confidence 56778999999999888776677777777772 23 46777777777777777654
No 497
>KOG3089 consensus Predicted DEAD-box-containing helicase [General function prediction only]
Probab=85.50 E-value=1.4 Score=40.26 Aligned_cols=31 Identities=29% Similarity=0.679 Sum_probs=29.2
Q ss_pred ccEEEeChHHHHHHHhcccccCCCeeEEEEc
Q 013173 274 VDILVATPGRLVDLLERARVSLQMIRYLALD 304 (448)
Q Consensus 274 ~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlD 304 (448)
.++-|+||+|+..+++.+.+.++.+.++|||
T Consensus 197 v~~gIgTp~Ri~~lv~~~~f~~~~lk~iIlD 227 (271)
T KOG3089|consen 197 VHLGIGTPGRIKELVKQGGFNLSPLKFIILD 227 (271)
T ss_pred eeEeecCcHHHHHHHHhcCCCCCcceeEEee
Confidence 6789999999999999998999999999998
No 498
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=85.49 E-value=1.1 Score=47.92 Aligned_cols=42 Identities=26% Similarity=0.344 Sum_probs=28.4
Q ss_pred CCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEec
Q 013173 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSA 340 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SA 340 (448)
+++-+++|+||+---+|..-+..+.+.+..+ ..++.+|+.|-
T Consensus 496 l~~~~ililDEptsaLD~~t~~~i~~~l~~~----~~~~tvI~VtH 537 (582)
T PRK11176 496 LRDSPILILDEATSALDTESERAIQAALDEL----QKNRTSLVIAH 537 (582)
T ss_pred HhCCCEEEEECccccCCHHHHHHHHHHHHHH----hCCCEEEEEec
Confidence 4566789999999888876666666666665 33444555553
No 499
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=85.45 E-value=2.4 Score=42.89 Aligned_cols=144 Identities=19% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCC-CCCceEEEEcCcHHHHHHHHHHHHHhcccC
Q 013173 172 QRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSR-TVYPLALILAPTRELSSQIHVEAKKFSYQT 250 (448)
Q Consensus 172 Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~-~~~~~~lil~PtreL~~qi~~~~~~~~~~~ 250 (448)
|..+++. .+..|++.++||+||++... .|+.+ ..+ ...|.+-|=|-.-.=--|..+ -.
T Consensus 93 qik~~ap--~~~~vLi~GetGtGKel~A~--~iH~~----------s~r~~~~PFI~~NCa~~~en~~~~e-------LF 151 (403)
T COG1221 93 QIKAYAP--SGLPVLIIGETGTGKELFAR--LIHAL----------SARRAEAPFIAFNCAAYSENLQEAE-------LF 151 (403)
T ss_pred HHHhhCC--CCCcEEEecCCCccHHHHHH--HHHHh----------hhcccCCCEEEEEHHHhCcCHHHHH-------Hh
Q ss_pred CcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcccccCCCHHHHHHHHHH-----c
Q 013173 251 GVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQ-----M 325 (448)
Q Consensus 251 ~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~-----l 325 (448)
|+.-..++|......-.-...+| ..|.+||+|+|.-.+ ...+..+++. +
T Consensus 152 G~~kGaftGa~~~k~Glfe~A~G-------------------------GtLfLDEI~~LP~~~-Q~kLl~~le~g~~~rv 205 (403)
T COG1221 152 GHEKGAFTGAQGGKAGLFEQANG-------------------------GTLFLDEIHRLPPEG-QEKLLRVLEEGEYRRV 205 (403)
T ss_pred ccccceeecccCCcCchheecCC-------------------------CEEehhhhhhCCHhH-HHHHHHHHHcCceEec
Q ss_pred CCCCCCCcEEEEEeccCchHHHHHHH--hhhcCcEEEEe
Q 013173 326 DMPPPGMRQTMLFSATFPKEIQRLAS--DFLANYIFLAV 362 (448)
Q Consensus 326 ~~~~~~~~q~i~~SAT~~~~v~~l~~--~~l~~~~~i~v 362 (448)
....+....+-+.+||--.--+.+.. +++...+.+.+
T Consensus 206 G~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~rl~~~~I 244 (403)
T COG1221 206 GGSQPRPVDVRLICATTEDLEEAVLAGADLTRRLNILTI 244 (403)
T ss_pred CCCCCcCCCceeeeccccCHHHHHHhhcchhhhhcCcee
No 500
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=85.44 E-value=0.86 Score=48.79 Aligned_cols=142 Identities=21% Similarity=0.171 Sum_probs=0.0
Q ss_pred HhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEE
Q 013173 179 SIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAY 258 (448)
Q Consensus 179 i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~ 258 (448)
+..|+-+.+.+++|||||+ ++-+|..++.... .=|...-..+...-...+++......-...++.
T Consensus 338 i~~G~~~~ivG~sGsGKST--Ll~ll~g~~~p~~-------------G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~ 402 (569)
T PRK10789 338 LKPGQMLGICGPTGSGKST--LLSLIQRHFDVSE-------------GDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFS 402 (569)
T ss_pred ECCCCEEEEECCCCCCHHH--HHHHHhcccCCCC-------------CEEEECCEEHhhCCHHHHHhheEEEccCCeecc
Q ss_pred CC-----------------------CChHHHHHHHhcCccEEEeChHHHHHHHhccccc-----CCCeeEEEEcCCcccc
Q 013173 259 GG-----------------------APINQQLRELERGVDILVATPGRLVDLLERARVS-----LQMIRYLALDEADRML 310 (448)
Q Consensus 259 gg-----------------------~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~-----l~~v~~lVlDEah~ll 310 (448)
+. ....+....+..+.+-.++.-+.-+.-=++.++. +.+-+++++||+-.-+
T Consensus 403 ~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~L 482 (569)
T PRK10789 403 DTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAV 482 (569)
T ss_pred ccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccC
Q ss_pred cCCCHHHHHHHHHHcCCCCCCCcEEEEEe
Q 013173 311 DMGFEPQIRKIVQQMDMPPPGMRQTMLFS 339 (448)
Q Consensus 311 ~~gf~~~i~~i~~~l~~~~~~~~q~i~~S 339 (448)
|...+..+.+.+..+ ...+.+|+.|
T Consensus 483 D~~~~~~i~~~l~~~----~~~~tii~it 507 (569)
T PRK10789 483 DGRTEHQILHNLRQW----GEGRTVIISA 507 (569)
T ss_pred CHHHHHHHHHHHHHH----hCCCEEEEEe
Done!