Query 013173
Match_columns 448
No_of_seqs 371 out of 2639
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 05:33:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013173.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013173hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 2E-54 6.8E-59 443.5 34.8 316 117-447 28-343 (434)
2 2i4i_A ATP-dependent RNA helic 100.0 9E-48 3.1E-52 390.7 34.1 309 133-447 3-319 (417)
3 2j0s_A ATP-dependent RNA helic 100.0 1.8E-45 6E-50 373.4 33.0 285 142-447 34-319 (410)
4 3eiq_A Eukaryotic initiation f 100.0 5E-43 1.7E-47 355.2 29.7 287 140-447 35-323 (414)
5 3i5x_A ATP-dependent RNA helic 100.0 5.6E-43 1.9E-47 369.8 30.3 288 152-447 79-385 (563)
6 1s2m_A Putative ATP-dependent 100.0 4.6E-42 1.6E-46 346.9 29.8 283 143-447 19-301 (400)
7 1wrb_A DJVLGB; RNA helicase, D 100.0 4.7E-43 1.6E-47 333.2 19.4 250 125-375 1-252 (253)
8 1xti_A Probable ATP-dependent 100.0 1.6E-41 5.6E-46 341.5 31.4 282 145-447 8-293 (391)
9 3fe2_A Probable ATP-dependent 100.0 4.2E-42 1.4E-46 324.7 22.9 225 132-365 16-240 (242)
10 3fht_A ATP-dependent RNA helic 100.0 2.8E-41 9.7E-46 341.9 30.5 285 139-447 19-309 (412)
11 1fuu_A Yeast initiation factor 100.0 3.7E-42 1.3E-46 346.3 21.4 284 142-447 18-302 (394)
12 3sqw_A ATP-dependent RNA helic 100.0 3.6E-41 1.2E-45 357.3 29.0 288 152-447 28-334 (579)
13 3pey_A ATP-dependent RNA helic 100.0 9.7E-41 3.3E-45 335.6 29.3 280 143-447 3-286 (395)
14 1hv8_A Putative ATP-dependent 100.0 3E-40 1E-44 328.7 30.6 276 144-447 5-281 (367)
15 3fmp_B ATP-dependent RNA helic 100.0 6.8E-42 2.3E-46 354.6 19.3 282 142-447 89-376 (479)
16 3iuy_A Probable ATP-dependent 100.0 3.6E-40 1.2E-44 308.3 21.1 218 136-362 10-228 (228)
17 3fmo_B ATP-dependent RNA helic 100.0 1.6E-39 5.6E-44 316.6 20.5 206 142-364 89-299 (300)
18 3bor_A Human initiation factor 100.0 3.9E-39 1.3E-43 303.4 20.0 212 138-363 23-235 (237)
19 3ber_A Probable ATP-dependent 100.0 7.8E-39 2.7E-43 303.7 21.5 208 142-363 40-248 (249)
20 2oxc_A Probable ATP-dependent 100.0 1.6E-38 5.4E-43 297.8 21.8 212 136-362 15-228 (230)
21 1vec_A ATP-dependent RNA helic 100.0 5.9E-38 2E-42 288.3 24.2 202 145-360 3-205 (206)
22 2z0m_A 337AA long hypothetical 100.0 2.1E-37 7.1E-42 304.8 28.3 259 152-447 1-259 (337)
23 2pl3_A Probable ATP-dependent 100.0 6.8E-38 2.3E-42 294.4 23.6 211 142-363 22-233 (236)
24 1q0u_A Bstdead; DEAD protein, 100.0 8.9E-39 3E-43 297.1 17.3 206 144-363 3-212 (219)
25 1qde_A EIF4A, translation init 100.0 6E-38 2.1E-42 292.1 21.8 212 139-365 8-219 (224)
26 3ly5_A ATP-dependent RNA helic 100.0 7.5E-38 2.6E-42 299.1 21.9 203 145-357 52-257 (262)
27 3dkp_A Probable ATP-dependent 100.0 1.6E-38 5.5E-43 300.3 16.3 222 132-365 12-243 (245)
28 2gxq_A Heat resistant RNA depe 100.0 2.3E-37 7.8E-42 284.4 22.4 205 146-363 2-206 (207)
29 1t6n_A Probable ATP-dependent 100.0 3.8E-37 1.3E-41 286.0 20.9 209 139-361 8-219 (220)
30 2v1x_A ATP-dependent DNA helic 100.0 2E-36 6.9E-41 320.0 28.5 269 147-447 23-310 (591)
31 3fho_A ATP-dependent RNA helic 100.0 7.3E-38 2.5E-42 326.7 16.3 282 141-447 115-400 (508)
32 1oyw_A RECQ helicase, ATP-depe 100.0 8E-36 2.7E-40 311.9 25.6 269 145-447 2-279 (523)
33 3oiy_A Reverse gyrase helicase 100.0 1.5E-36 5.1E-41 308.6 19.4 251 155-437 9-286 (414)
34 1tf5_A Preprotein translocase 100.0 5.3E-35 1.8E-39 311.5 16.4 262 162-446 79-474 (844)
35 3l9o_A ATP-dependent RNA helic 100.0 1.6E-34 5.4E-39 324.0 17.5 269 145-447 162-523 (1108)
36 2zj8_A DNA helicase, putative 100.0 1.1E-33 3.8E-38 307.0 22.5 267 146-447 2-313 (720)
37 2va8_A SSO2462, SKI2-type heli 100.0 6.8E-33 2.3E-37 300.7 27.3 271 145-447 8-331 (715)
38 4ddu_A Reverse gyrase; topoiso 100.0 1.9E-33 6.5E-38 315.2 22.4 244 162-437 74-343 (1104)
39 4a2p_A RIG-I, retinoic acid in 100.0 5.5E-33 1.9E-37 292.0 22.7 171 164-343 4-177 (556)
40 2ykg_A Probable ATP-dependent 100.0 1.5E-33 5.2E-38 304.9 18.5 179 157-343 3-184 (696)
41 2fsf_A Preprotein translocase 100.0 2.7E-33 9.3E-38 297.7 17.8 261 163-446 71-483 (853)
42 2p6r_A Afuhel308 helicase; pro 100.0 1.4E-33 4.7E-38 305.5 13.4 269 146-447 2-315 (702)
43 3tbk_A RIG-I helicase domain; 100.0 6.6E-32 2.2E-36 283.3 24.9 171 166-344 3-176 (555)
44 1gku_B Reverse gyrase, TOP-RG; 100.0 2E-33 6.8E-38 314.8 12.9 246 162-442 53-312 (1054)
45 4a2q_A RIG-I, retinoic acid in 100.0 7.9E-32 2.7E-36 295.5 23.7 174 162-343 243-418 (797)
46 1nkt_A Preprotein translocase 100.0 1.3E-32 4.4E-37 292.9 16.5 262 162-446 107-502 (922)
47 2xgj_A ATP-dependent RNA helic 100.0 1.3E-30 4.6E-35 289.9 26.4 251 162-447 82-425 (1010)
48 4a2w_A RIG-I, retinoic acid in 100.0 4.3E-31 1.5E-35 293.3 22.1 176 160-343 241-418 (936)
49 4a4z_A Antiviral helicase SKI2 100.0 1.1E-30 3.7E-35 290.5 22.8 156 164-346 37-192 (997)
50 1wp9_A ATP-dependent RNA helic 100.0 5.4E-29 1.8E-33 255.6 27.1 169 167-353 9-180 (494)
51 4f92_B U5 small nuclear ribonu 100.0 1.5E-29 5.1E-34 293.2 23.9 278 152-447 911-1232(1724)
52 4f92_B U5 small nuclear ribonu 100.0 3.1E-29 1E-33 290.6 24.6 272 164-446 76-396 (1724)
53 4gl2_A Interferon-induced heli 100.0 3.5E-30 1.2E-34 278.6 14.5 171 166-344 6-193 (699)
54 2eyq_A TRCF, transcription-rep 100.0 6.7E-28 2.3E-32 271.8 27.8 258 151-447 587-857 (1151)
55 1gm5_A RECG; helicase, replica 100.0 2.9E-28 1E-32 263.5 16.7 256 154-447 356-632 (780)
56 2whx_A Serine protease/ntpase/ 100.0 1.8E-29 6E-34 267.9 5.4 240 150-447 155-394 (618)
57 2oca_A DAR protein, ATP-depend 99.9 4.2E-28 1.4E-32 253.0 13.3 251 166-447 112-390 (510)
58 2jlq_A Serine protease subunit 99.9 3.3E-28 1.1E-32 250.0 10.8 223 164-440 1-224 (451)
59 2xau_A PRE-mRNA-splicing facto 99.9 1.2E-26 4.1E-31 252.1 23.1 274 142-447 69-357 (773)
60 3o8b_A HCV NS3 protease/helica 99.9 1.1E-28 3.7E-33 260.6 6.1 217 168-444 218-436 (666)
61 2wv9_A Flavivirin protease NS2 99.9 2.6E-28 9E-33 260.7 0.1 222 160-447 203-449 (673)
62 2fwr_A DNA repair protein RAD2 99.9 3.5E-26 1.2E-30 236.2 10.8 229 166-447 92-387 (472)
63 1yks_A Genome polyprotein [con 99.9 2.8E-27 9.5E-32 242.2 1.7 198 178-437 4-210 (440)
64 3b6e_A Interferon-induced heli 99.9 1.4E-25 4.9E-30 206.5 10.6 170 164-341 30-216 (216)
65 2z83_A Helicase/nucleoside tri 99.9 1.6E-25 5.4E-30 230.5 8.8 204 176-437 15-223 (459)
66 2v6i_A RNA helicase; membrane, 99.9 2.2E-24 7.6E-29 220.1 15.7 204 181-437 1-204 (431)
67 3llm_A ATP-dependent RNA helic 99.9 2.1E-24 7.1E-29 202.5 13.3 183 153-358 47-232 (235)
68 2ipc_A Preprotein translocase 99.9 5.8E-23 2E-27 218.3 24.1 131 162-310 75-215 (997)
69 3h1t_A Type I site-specific re 99.9 2.8E-24 9.7E-29 228.0 13.0 255 167-447 178-489 (590)
70 3rc3_A ATP-dependent RNA helic 99.9 1.6E-23 5.5E-28 223.3 14.0 220 171-447 144-363 (677)
71 1rif_A DAR protein, DNA helica 99.9 6.8E-23 2.3E-27 197.4 9.8 156 166-347 112-267 (282)
72 1z63_A Helicase of the SNF2/RA 99.9 9.4E-21 3.2E-25 196.8 21.1 246 167-447 37-385 (500)
73 2w00_A HSDR, R.ECOR124I; ATP-b 99.8 1E-20 3.5E-25 209.8 18.8 153 167-344 271-440 (1038)
74 3dmq_A RNA polymerase-associat 99.8 1.7E-20 5.9E-25 208.7 11.6 158 166-342 152-316 (968)
75 3mwy_W Chromo domain-containin 99.8 3.7E-18 1.3E-22 186.9 24.1 255 166-447 235-615 (800)
76 2fz4_A DNA repair protein RAD2 99.8 5.6E-19 1.9E-23 165.7 14.6 139 166-345 92-231 (237)
77 1z3i_X Similar to RAD54-like; 99.8 2.5E-17 8.4E-22 176.2 27.4 159 167-342 55-230 (644)
78 3jux_A Protein translocase sub 99.8 4.8E-17 1.6E-21 170.3 25.5 254 166-444 74-514 (822)
79 3crv_A XPD/RAD3 related DNA he 99.7 1.6E-16 5.3E-21 167.0 12.1 129 167-311 3-187 (551)
80 1c4o_A DNA nucleotide excision 99.6 2.1E-14 7.2E-19 153.6 18.8 103 332-447 380-482 (664)
81 2vl7_A XPD; helicase, unknown 99.5 4E-15 1.4E-19 155.8 7.8 127 163-310 4-188 (540)
82 2d7d_A Uvrabc system protein B 99.4 8.6E-14 3E-18 148.8 6.8 257 154-447 170-488 (661)
83 4a15_A XPD helicase, ATP-depen 99.3 7.2E-13 2.4E-17 140.6 7.1 84 166-261 2-89 (620)
84 2p6n_A ATP-dependent RNA helic 99.0 3.7E-10 1.3E-14 101.8 8.3 89 351-447 9-97 (191)
85 1w36_D RECD, exodeoxyribonucle 99.0 4.7E-10 1.6E-14 118.8 6.8 146 169-341 151-298 (608)
86 2hjv_A ATP-dependent RNA helic 98.8 1.3E-08 4.5E-13 89.0 10.4 75 366-447 4-78 (163)
87 1t5i_A C_terminal domain of A 98.8 1.3E-08 4.4E-13 90.0 9.6 73 368-447 2-74 (172)
88 1fuk_A Eukaryotic initiation f 98.7 4.1E-08 1.4E-12 85.9 10.0 71 370-447 2-73 (165)
89 2rb4_A ATP-dependent RNA helic 98.7 2.5E-08 8.5E-13 88.3 8.6 74 367-447 3-77 (175)
90 2jgn_A DBX, DDX3, ATP-dependen 98.7 4.2E-08 1.4E-12 87.8 8.9 76 366-447 14-89 (185)
91 3i32_A Heat resistant RNA depe 98.4 6.9E-07 2.3E-11 86.0 9.4 70 371-447 2-71 (300)
92 3eaq_A Heat resistant RNA depe 98.4 7.2E-07 2.5E-11 81.4 8.4 69 372-447 6-74 (212)
93 2yjt_D ATP-dependent RNA helic 97.7 5.3E-08 1.8E-12 85.7 0.0 71 370-447 2-73 (170)
94 3upu_A ATP-dependent DNA helic 98.0 1.3E-05 4.6E-10 81.7 9.9 69 163-243 21-94 (459)
95 3e1s_A Exodeoxyribonuclease V, 98.0 2.4E-05 8.1E-10 82.0 10.9 127 166-340 188-314 (574)
96 2gk6_A Regulator of nonsense t 98.0 6.8E-05 2.3E-09 79.5 14.2 70 165-246 178-247 (624)
97 2xzl_A ATP-dependent helicase 97.9 0.00011 3.9E-09 79.8 14.1 70 165-246 358-427 (802)
98 4b3f_X DNA-binding protein smu 97.9 1.6E-05 5.3E-10 84.8 7.2 67 167-246 189-256 (646)
99 3lfu_A DNA helicase II; SF1 he 97.8 0.0017 5.8E-08 68.8 22.2 71 166-247 8-78 (647)
100 2wjy_A Regulator of nonsense t 97.8 0.00016 5.4E-09 78.6 13.3 70 165-246 354-423 (800)
101 1z5z_A Helicase of the SNF2/RA 97.5 0.00017 5.8E-09 68.2 7.2 64 379-447 92-156 (271)
102 3ec2_A DNA replication protein 97.1 0.0016 5.4E-08 57.0 8.7 19 181-199 37-55 (180)
103 2o0j_A Terminase, DNA packagin 96.9 0.0071 2.4E-07 59.8 12.5 71 167-248 163-233 (385)
104 3cpe_A Terminase, DNA packagin 96.5 0.017 6E-07 60.5 12.3 72 167-249 163-234 (592)
105 2kjq_A DNAA-related protein; s 96.3 0.0089 3E-07 50.8 7.2 19 181-199 35-53 (149)
106 3te6_A Regulatory protein SIR3 96.1 0.024 8E-07 54.6 10.1 43 296-342 131-173 (318)
107 3vkw_A Replicase large subunit 96.1 0.013 4.4E-07 58.8 8.4 45 183-245 162-206 (446)
108 1d2n_A N-ethylmaleimide-sensit 95.7 0.064 2.2E-06 49.9 10.9 50 296-345 123-178 (272)
109 1l8q_A Chromosomal replication 95.7 0.028 9.7E-07 53.9 8.4 18 182-199 37-54 (324)
110 2v1u_A Cell division control p 95.6 0.029 1E-06 54.7 8.6 19 181-199 43-61 (387)
111 3bos_A Putative DNA replicatio 95.6 0.0059 2E-07 55.4 3.1 19 181-199 51-69 (242)
112 1xx6_A Thymidine kinase; NESG, 95.5 0.034 1.2E-06 49.3 7.7 40 181-233 7-46 (191)
113 2chg_A Replication factor C sm 95.5 0.21 7E-06 44.0 13.0 17 183-199 39-55 (226)
114 2orw_A Thymidine kinase; TMTK, 95.4 0.034 1.2E-06 48.9 7.3 39 182-233 3-41 (184)
115 2z4s_A Chromosomal replication 95.2 0.054 1.8E-06 54.5 8.9 45 297-344 194-239 (440)
116 3h4m_A Proteasome-activating n 95.1 0.015 5.1E-07 54.6 4.4 53 145-199 14-68 (285)
117 2zpa_A Uncharacterized protein 95.1 0.027 9.1E-07 59.4 6.4 112 167-342 175-288 (671)
118 2b8t_A Thymidine kinase; deoxy 95.0 0.024 8.4E-07 51.6 5.1 92 181-310 11-102 (223)
119 2qz4_A Paraplegin; AAA+, SPG7, 94.8 0.09 3.1E-06 48.3 8.8 18 182-199 39-56 (262)
120 3syl_A Protein CBBX; photosynt 94.8 0.025 8.6E-07 53.6 4.9 18 182-199 67-84 (309)
121 1uaa_A REP helicase, protein ( 94.6 0.04 1.4E-06 58.6 6.4 70 167-247 2-71 (673)
122 3u4q_A ATP-dependent helicase/ 94.5 0.037 1.3E-06 63.1 6.4 71 166-245 9-79 (1232)
123 3kl4_A SRP54, signal recogniti 94.5 0.13 4.4E-06 51.5 9.6 55 296-354 178-235 (433)
124 2qgz_A Helicase loader, putati 94.4 0.054 1.8E-06 51.8 6.1 19 182-200 152-170 (308)
125 2qby_A CDC6 homolog 1, cell di 94.3 0.054 1.8E-06 52.7 6.1 18 182-199 45-62 (386)
126 3u61_B DNA polymerase accessor 94.1 0.4 1.4E-05 45.6 11.9 42 296-342 104-145 (324)
127 1pjr_A PCRA; DNA repair, DNA r 94.1 0.077 2.6E-06 57.0 7.4 71 166-247 10-80 (724)
128 1njg_A DNA polymerase III subu 94.1 0.34 1.2E-05 43.1 10.7 16 184-199 47-62 (250)
129 1a5t_A Delta prime, HOLB; zinc 94.1 0.47 1.6E-05 45.6 12.3 33 168-200 3-42 (334)
130 1fnn_A CDC6P, cell division co 94.0 0.15 5E-06 49.8 8.5 16 184-199 46-61 (389)
131 1jbk_A CLPB protein; beta barr 93.9 0.13 4.6E-06 44.1 7.3 18 182-199 43-60 (195)
132 2w58_A DNAI, primosome compone 93.7 0.15 5.1E-06 44.9 7.3 17 183-199 55-71 (202)
133 2p65_A Hypothetical protein PF 93.7 0.088 3E-06 45.2 5.7 18 182-199 43-60 (187)
134 2j9r_A Thymidine kinase; TK1, 93.6 0.087 3E-06 47.4 5.6 40 182-234 28-67 (214)
135 2hjv_A ATP-dependent RNA helic 93.6 0.49 1.7E-05 40.1 10.3 72 225-306 37-112 (163)
136 1iqp_A RFCS; clamp loader, ext 93.6 0.3 1E-05 46.2 9.7 16 184-199 48-63 (327)
137 1xwi_A SKD1 protein; VPS4B, AA 93.5 0.1 3.5E-06 50.1 6.4 49 145-199 9-62 (322)
138 1sxj_E Activator 1 40 kDa subu 93.5 0.35 1.2E-05 46.6 10.2 42 146-199 12-53 (354)
139 2p6n_A ATP-dependent RNA helic 93.5 2.4 8.4E-05 36.9 14.9 72 224-305 55-130 (191)
140 3eie_A Vacuolar protein sortin 93.4 0.049 1.7E-06 52.3 3.8 49 145-199 15-68 (322)
141 2qby_B CDC6 homolog 3, cell di 93.2 0.18 6.1E-06 49.1 7.7 18 182-199 45-62 (384)
142 1w4r_A Thymidine kinase; type 92.7 0.21 7.1E-06 44.3 6.4 19 181-199 19-37 (195)
143 3e2i_A Thymidine kinase; Zn-bi 92.6 0.2 6.9E-06 45.1 6.4 41 181-234 27-67 (219)
144 1sxj_A Activator 1 95 kDa subu 92.3 0.42 1.4E-05 49.0 9.3 41 296-342 147-189 (516)
145 2rb4_A ATP-dependent RNA helic 92.3 0.51 1.8E-05 40.5 8.6 71 224-304 35-109 (175)
146 2orv_A Thymidine kinase; TP4A 92.2 0.29 9.9E-06 44.5 7.0 40 181-233 18-57 (234)
147 1sxj_C Activator 1 40 kDa subu 92.2 0.47 1.6E-05 45.6 9.1 38 296-338 109-146 (340)
148 3eaq_A Heat resistant RNA depe 92.2 0.62 2.1E-05 41.6 9.2 69 225-303 33-105 (212)
149 1fuk_A Eukaryotic initiation f 92.2 0.87 3E-05 38.6 9.8 73 224-306 31-107 (165)
150 2qp9_X Vacuolar protein sortin 92.2 0.13 4.5E-06 50.1 5.0 18 182-199 84-101 (355)
151 2zan_A Vacuolar protein sortin 92.1 0.21 7.3E-06 50.2 6.6 51 145-199 131-184 (444)
152 1lv7_A FTSH; alpha/beta domain 91.6 0.73 2.5E-05 42.1 9.3 52 145-199 9-62 (257)
153 1t5i_A C_terminal domain of A 91.6 3.2 0.00011 35.4 12.8 72 225-306 33-108 (172)
154 3b9p_A CG5977-PA, isoform A; A 91.5 0.38 1.3E-05 45.1 7.3 19 181-199 53-71 (297)
155 3pvs_A Replication-associated 91.3 0.34 1.2E-05 48.8 7.1 17 183-199 51-67 (447)
156 3cf0_A Transitional endoplasmi 91.3 0.22 7.6E-06 47.1 5.4 19 181-199 48-66 (301)
157 3pfi_A Holliday junction ATP-d 91.2 0.39 1.3E-05 45.9 7.2 17 183-199 56-72 (338)
158 3pey_A ATP-dependent RNA helic 91.2 3.5 0.00012 39.6 14.2 76 223-308 243-322 (395)
159 2dr3_A UPF0273 protein PH0284; 91.1 0.44 1.5E-05 43.0 7.1 52 181-246 22-73 (247)
160 3fht_A ATP-dependent RNA helic 91.0 2.3 8E-05 41.2 12.9 72 224-305 267-342 (412)
161 3vfd_A Spastin; ATPase, microt 90.9 0.65 2.2E-05 45.6 8.6 18 182-199 148-165 (389)
162 3t15_A Ribulose bisphosphate c 90.8 0.14 4.8E-06 48.4 3.5 17 183-199 37-53 (293)
163 3dm5_A SRP54, signal recogniti 90.7 3.2 0.00011 41.5 13.4 17 183-199 101-117 (443)
164 2jgn_A DBX, DDX3, ATP-dependen 90.6 2 6.7E-05 37.3 10.6 71 224-304 47-121 (185)
165 1n0w_A DNA repair protein RAD5 90.4 0.51 1.8E-05 42.5 6.9 23 181-203 23-45 (243)
166 1hqc_A RUVB; extended AAA-ATPa 90.3 0.52 1.8E-05 44.6 7.1 18 182-199 38-55 (324)
167 1g5t_A COB(I)alamin adenosyltr 90.2 0.55 1.9E-05 41.6 6.6 52 296-351 119-172 (196)
168 1w5s_A Origin recognition comp 90.2 0.62 2.1E-05 45.6 7.8 18 182-199 50-69 (412)
169 2chq_A Replication factor C sm 90.1 0.62 2.1E-05 43.8 7.5 41 146-199 15-55 (319)
170 1sxj_D Activator 1 41 kDa subu 90.0 0.9 3.1E-05 43.4 8.6 17 183-199 59-75 (353)
171 1jr3_A DNA polymerase III subu 89.9 3 0.0001 40.0 12.3 16 184-199 40-55 (373)
172 2i4i_A ATP-dependent RNA helic 89.9 5.9 0.0002 38.4 14.7 71 223-303 276-350 (417)
173 2ehv_A Hypothetical protein PH 89.9 0.13 4.5E-06 46.7 2.4 47 296-346 134-185 (251)
174 2d7d_A Uvrabc system protein B 89.8 6.2 0.00021 41.6 15.5 76 224-309 446-525 (661)
175 2w0m_A SSO2452; RECA, SSPF, un 89.8 0.68 2.3E-05 41.2 7.1 20 181-200 22-41 (235)
176 4b4t_J 26S protease regulatory 89.7 0.19 6.6E-06 49.7 3.5 54 143-199 143-199 (405)
177 2gno_A DNA polymerase III, gam 89.7 1.1 3.8E-05 42.5 8.7 46 295-346 80-125 (305)
178 1sxj_B Activator 1 37 kDa subu 89.6 1.2 4E-05 41.9 9.0 16 184-199 44-59 (323)
179 3i32_A Heat resistant RNA depe 89.5 1.4 4.6E-05 41.8 9.2 69 225-303 30-102 (300)
180 2iut_A DNA translocase FTSK; n 89.2 2.3 7.7E-05 44.0 11.1 27 182-208 214-240 (574)
181 1cr0_A DNA primase/helicase; R 88.1 0.57 2E-05 43.9 5.6 22 180-201 33-54 (296)
182 2cvh_A DNA repair and recombin 88.0 0.5 1.7E-05 41.8 4.8 21 181-201 19-39 (220)
183 2r6a_A DNAB helicase, replicat 87.9 1 3.5E-05 45.3 7.5 25 181-205 202-226 (454)
184 2yka_B ORF57 protein, 52 kDa i 87.4 0.11 3.6E-06 28.7 0.0 15 2-16 8-22 (26)
185 3m6a_A ATP-dependent protease 87.4 0.48 1.6E-05 48.9 4.8 19 181-199 107-125 (543)
186 2q6t_A DNAB replication FORK h 87.4 0.86 3E-05 45.6 6.6 25 181-205 199-223 (444)
187 1xti_A Probable ATP-dependent 87.3 6.7 0.00023 37.6 12.9 74 224-307 251-328 (391)
188 1c4o_A DNA nucleotide excision 87.1 7.6 0.00026 40.9 14.0 76 224-309 440-519 (664)
189 1hv8_A Putative ATP-dependent 86.6 6.4 0.00022 37.2 12.2 73 224-306 239-315 (367)
190 4b4t_L 26S protease subunit RP 86.4 0.28 9.7E-06 49.1 2.4 54 143-199 176-232 (437)
191 2ce7_A Cell division protein F 86.4 0.37 1.3E-05 48.8 3.2 17 183-199 50-66 (476)
192 2v1x_A ATP-dependent DNA helic 86.3 2.2 7.5E-05 44.4 9.2 72 223-304 267-342 (591)
193 4b4t_H 26S protease regulatory 86.0 1.2 4.1E-05 44.7 6.7 54 143-199 204-260 (467)
194 3i5x_A ATP-dependent RNA helic 85.6 2.7 9.2E-05 43.1 9.4 78 223-307 339-420 (563)
195 2db3_A ATP-dependent RNA helic 85.1 2.9 0.0001 41.4 9.2 68 226-303 303-374 (434)
196 3sqw_A ATP-dependent RNA helic 85.1 3.2 0.00011 42.9 9.7 77 224-307 289-369 (579)
197 3hu3_A Transitional endoplasmi 84.9 2.1 7E-05 43.5 7.9 18 182-199 238-255 (489)
198 2zr9_A Protein RECA, recombina 84.9 1.1 3.8E-05 43.4 5.7 22 181-202 60-81 (349)
199 2j0s_A ATP-dependent RNA helic 84.8 3.4 0.00012 40.2 9.4 71 224-304 277-351 (410)
200 4a1f_A DNAB helicase, replicat 84.1 0.69 2.4E-05 44.7 3.8 25 181-205 45-69 (338)
201 1oyw_A RECQ helicase, ATP-depe 83.7 3.3 0.00011 42.4 8.9 71 225-305 238-312 (523)
202 1xp8_A RECA protein, recombina 83.6 3 0.0001 40.5 8.3 21 181-201 73-93 (366)
203 2eyq_A TRCF, transcription-rep 83.5 2.2 7.5E-05 48.2 8.1 78 223-308 812-893 (1151)
204 2fna_A Conserved hypothetical 83.3 24 0.00084 32.9 14.6 42 281-325 124-168 (357)
205 1s2m_A Putative ATP-dependent 83.1 4.3 0.00015 39.2 9.3 72 224-305 259-334 (400)
206 3e70_C DPA, signal recognition 83.1 5.6 0.00019 38.0 9.8 53 298-354 212-265 (328)
207 3hjh_A Transcription-repair-co 83.0 3.2 0.00011 42.0 8.4 52 181-248 13-64 (483)
208 2z43_A DNA repair and recombin 82.7 2.2 7.6E-05 40.6 6.8 24 181-204 106-129 (324)
209 3bh0_A DNAB-like replicative h 82.6 0.64 2.2E-05 44.3 2.9 25 181-205 67-91 (315)
210 1yks_A Genome polyprotein [con 82.4 1.6 5.5E-05 43.6 5.9 67 224-302 178-245 (440)
211 3gk5_A Uncharacterized rhodane 82.2 1.1 3.8E-05 35.1 3.7 37 404-440 55-91 (108)
212 3co5_A Putative two-component 82.0 0.74 2.5E-05 38.1 2.7 21 179-199 24-44 (143)
213 2l8b_A Protein TRAI, DNA helic 81.7 0.82 2.8E-05 39.9 2.9 61 169-241 36-98 (189)
214 3g5j_A Putative ATP/GTP bindin 80.3 3 0.0001 33.6 5.9 37 405-441 90-127 (134)
215 1nlf_A Regulatory protein REPA 80.3 1.9 6.5E-05 39.9 5.2 25 179-203 27-51 (279)
216 3foj_A Uncharacterized protein 80.2 1.2 4.2E-05 34.2 3.3 36 404-439 56-91 (100)
217 4a74_A DNA repair and recombin 80.2 4.4 0.00015 35.7 7.5 20 181-200 24-43 (231)
218 3n70_A Transport activator; si 80.2 0.87 3E-05 37.8 2.5 21 180-200 22-42 (145)
219 1r6b_X CLPA protein; AAA+, N-t 80.1 3 0.0001 44.7 7.3 19 181-199 206-224 (758)
220 1wv9_A Rhodanese homolog TT165 80.0 1.5 5.2E-05 33.3 3.7 35 405-439 54-88 (94)
221 3jvv_A Twitching mobility prot 80.0 1.2 4.2E-05 43.2 3.9 18 181-198 122-139 (356)
222 3iwh_A Rhodanese-like domain p 80.0 1.1 3.8E-05 35.0 3.0 36 404-439 56-91 (103)
223 1e9r_A Conjugal transfer prote 79.9 1 3.4E-05 44.9 3.4 43 181-236 52-94 (437)
224 3pxi_A Negative regulator of g 79.6 2.1 7.1E-05 46.0 5.9 95 184-339 523-627 (758)
225 4a15_A XPD helicase, ATP-depen 79.4 4 0.00014 42.7 7.9 41 404-447 448-488 (620)
226 2eyu_A Twitching motility prot 79.4 1.3 4.4E-05 41.0 3.7 28 179-208 22-49 (261)
227 3eme_A Rhodanese-like domain p 79.3 1.2 4.1E-05 34.5 3.0 36 404-439 56-91 (103)
228 2px0_A Flagellar biosynthesis 79.3 8.8 0.0003 36.0 9.6 55 296-353 181-236 (296)
229 4f4c_A Multidrug resistance pr 78.8 0.97 3.3E-05 51.8 3.1 31 295-325 1233-1263(1321)
230 2yjt_D ATP-dependent RNA helic 79.9 0.42 1.4E-05 40.9 0.0 72 224-305 31-106 (170)
231 1wp9_A ATP-dependent RNA helic 78.4 4.7 0.00016 39.6 7.8 74 224-307 362-447 (494)
232 2yhs_A FTSY, cell division pro 78.0 6.8 0.00023 39.7 8.7 58 297-354 375-435 (503)
233 3cf2_A TER ATPase, transitiona 78.0 1.5 5E-05 47.4 4.0 17 183-199 239-255 (806)
234 3cmu_A Protein RECA, recombina 77.9 1.2 4.2E-05 52.6 3.6 23 182-204 1427-1449(2050)
235 2xau_A PRE-mRNA-splicing facto 76.9 5.4 0.00019 42.9 8.2 74 224-303 304-393 (773)
236 2oap_1 GSPE-2, type II secreti 76.7 1.7 5.8E-05 44.4 3.9 31 168-198 245-276 (511)
237 3hix_A ALR3790 protein; rhodan 76.5 2.2 7.5E-05 33.2 3.8 37 404-440 52-89 (106)
238 2v6i_A RNA helicase; membrane, 76.5 3.2 0.00011 41.2 5.9 66 224-301 172-238 (431)
239 2wv9_A Flavivirin protease NS2 75.9 3.4 0.00012 43.7 6.2 68 223-302 410-478 (673)
240 1qvr_A CLPB protein; coiled co 75.6 3.2 0.00011 45.2 6.0 18 182-199 191-208 (854)
241 3nwn_A Kinesin-like protein KI 75.5 1.3 4.4E-05 43.1 2.5 25 175-199 96-122 (359)
242 1vma_A Cell division protein F 75.2 5.5 0.00019 37.6 6.9 18 182-199 104-121 (306)
243 3h75_A Periplasmic sugar-bindi 75.2 54 0.0018 30.6 16.2 185 224-430 4-230 (350)
244 1ls1_A Signal recognition part 74.8 16 0.00055 34.1 10.0 19 181-199 97-115 (295)
245 2oca_A DAR protein, ATP-depend 74.8 13 0.00044 37.3 10.0 74 225-307 349-426 (510)
246 3cmu_A Protein RECA, recombina 74.3 3.6 0.00012 48.7 6.2 28 180-207 1079-1106(2050)
247 1bg2_A Kinesin; motor protein, 73.7 1.6 5.4E-05 41.8 2.6 24 176-199 70-95 (325)
248 2k0z_A Uncharacterized protein 73.1 4 0.00014 31.9 4.5 37 404-440 56-92 (110)
249 2fsx_A RV0390, COG0607: rhodan 73.1 3.9 0.00013 33.9 4.7 36 404-439 80-116 (148)
250 2i1q_A DNA repair and recombin 72.9 3.9 0.00013 38.7 5.2 23 182-204 98-120 (322)
251 1v5w_A DMC1, meiotic recombina 72.8 2.9 0.0001 40.2 4.3 22 182-203 122-143 (343)
252 2zfi_A Kinesin-like protein KI 72.5 1.7 5.9E-05 42.3 2.6 24 176-199 82-107 (366)
253 3b85_A Phosphate starvation-in 72.3 3.6 0.00012 36.5 4.5 37 169-207 9-45 (208)
254 3lda_A DNA repair protein RAD5 72.2 7.2 0.00025 38.4 7.1 22 182-203 178-199 (400)
255 1u94_A RECA protein, recombina 72.2 5.4 0.00019 38.6 6.1 23 181-203 62-84 (356)
256 3dc4_A Kinesin-like protein NO 72.2 1.6 5.3E-05 42.2 2.2 24 176-199 87-112 (344)
257 2h58_A Kinesin-like protein KI 72.0 1.8 6.3E-05 41.5 2.6 25 175-199 72-98 (330)
258 1gmx_A GLPE protein; transfera 71.9 2.5 8.4E-05 32.9 3.0 37 404-440 58-95 (108)
259 2vvg_A Kinesin-2; motor protei 71.8 1.9 6.4E-05 41.8 2.6 23 177-199 83-107 (350)
260 1t5c_A CENP-E protein, centrom 71.7 1.8 6.2E-05 41.9 2.5 24 176-199 70-95 (349)
261 2r2a_A Uncharacterized protein 71.7 1.4 4.9E-05 38.9 1.6 48 298-347 88-137 (199)
262 2nr8_A Kinesin-like protein KI 71.7 1.8 6.2E-05 42.0 2.5 25 175-199 95-121 (358)
263 1goj_A Kinesin, kinesin heavy 71.5 1.9 6.4E-05 41.9 2.6 23 177-199 74-98 (355)
264 3b6u_A Kinesin-like protein KI 71.5 1.8 6.3E-05 42.2 2.5 24 176-199 94-119 (372)
265 3b5x_A Lipid A export ATP-bind 71.4 4.4 0.00015 42.0 5.6 42 295-341 496-537 (582)
266 2y65_A Kinesin, kinesin heavy 71.3 1.9 6.6E-05 41.9 2.6 23 177-199 78-102 (365)
267 4a14_A Kinesin, kinesin-like p 71.3 1.9 6.6E-05 41.6 2.6 24 176-199 76-101 (344)
268 3gbj_A KIF13B protein; kinesin 71.2 1.9 6.4E-05 41.8 2.5 25 175-199 84-110 (354)
269 3lre_A Kinesin-like protein KI 71.1 1.9 6.6E-05 41.8 2.6 24 176-199 98-123 (355)
270 1x88_A Kinesin-like protein KI 71.1 1.7 5.9E-05 42.2 2.2 24 176-199 81-106 (359)
271 1f9v_A Kinesin-like protein KA 71.1 1.9 6.6E-05 41.7 2.5 25 175-199 76-102 (347)
272 1p9r_A General secretion pathw 71.0 2.7 9.3E-05 41.7 3.7 18 181-198 166-183 (418)
273 3rc3_A ATP-dependent RNA helic 71.0 11 0.00039 39.7 8.6 73 226-309 323-401 (677)
274 3hgt_A HDA1 complex subunit 3; 71.0 4.8 0.00016 38.4 5.2 58 379-441 105-162 (328)
275 2z0m_A 337AA long hypothetical 70.6 7.6 0.00026 36.2 6.7 69 224-306 221-293 (337)
276 3bgw_A DNAB-like replicative h 70.6 3.5 0.00012 41.2 4.5 27 181-207 196-222 (444)
277 1v8k_A Kinesin-like protein KI 70.5 1.8 6.2E-05 42.8 2.3 24 176-199 147-172 (410)
278 2gza_A Type IV secretion syste 70.4 1.8 6E-05 42.1 2.1 20 179-198 172-191 (361)
279 2wbe_C Bipolar kinesin KRP-130 70.2 1.8 6.2E-05 42.3 2.2 24 176-199 93-118 (373)
280 2jtq_A Phage shock protein E; 70.2 4.5 0.00015 29.8 4.0 36 404-440 41-77 (85)
281 3nhv_A BH2092 protein; alpha-b 70.1 2.9 9.9E-05 34.7 3.2 37 404-440 72-110 (144)
282 1tq1_A AT5G66040, senescence-a 70.0 2.9 9.9E-05 33.8 3.1 37 404-440 82-119 (129)
283 3t0q_A AGR253WP; kinesin, alph 69.9 1.9 6.6E-05 41.7 2.3 25 175-199 77-103 (349)
284 3flh_A Uncharacterized protein 69.6 2.1 7.3E-05 34.4 2.2 37 404-440 71-109 (124)
285 4f4c_A Multidrug resistance pr 69.4 0.79 2.7E-05 52.5 -0.7 31 295-325 570-600 (1321)
286 4etp_A Kinesin-like protein KA 69.4 2 6.9E-05 42.4 2.3 25 175-199 132-158 (403)
287 3hr8_A Protein RECA; alpha and 69.3 3.2 0.00011 40.2 3.7 19 181-199 60-78 (356)
288 2heh_A KIF2C protein; kinesin, 69.3 2.1 7E-05 42.0 2.3 24 176-199 127-152 (387)
289 2owm_A Nckin3-434, related to 69.2 2.2 7.6E-05 42.6 2.6 24 176-199 129-154 (443)
290 2zts_A Putative uncharacterize 69.1 3 0.0001 37.4 3.3 53 181-246 29-81 (251)
291 3bfn_A Kinesin-like protein KI 69.1 1.9 6.4E-05 42.3 2.0 22 178-199 93-116 (388)
292 3cob_A Kinesin heavy chain-lik 69.1 1.8 6.3E-05 42.1 1.9 25 175-199 71-97 (369)
293 1qxn_A SUD, sulfide dehydrogen 69.0 3.3 0.00011 33.9 3.3 37 404-440 82-119 (137)
294 3crv_A XPD/RAD3 related DNA he 69.0 25 0.00084 35.9 10.6 103 333-445 316-431 (551)
295 2jlq_A Serine protease subunit 68.9 6.9 0.00023 39.0 6.2 67 224-302 189-256 (451)
296 2hhg_A Hypothetical protein RP 68.6 3.3 0.00011 33.8 3.2 37 404-440 86-123 (139)
297 3u06_A Protein claret segregat 68.5 2.2 7.4E-05 42.3 2.3 25 175-199 130-156 (412)
298 3egc_A Putative ribose operon 68.1 47 0.0016 29.9 11.6 185 226-430 11-211 (291)
299 3d1p_A Putative thiosulfate su 67.9 3.8 0.00013 33.5 3.4 37 404-440 91-128 (139)
300 2whx_A Serine protease/ntpase/ 67.9 11 0.00038 39.2 7.8 67 224-302 356-423 (618)
301 3o8b_A HCV NS3 protease/helica 67.8 5.6 0.00019 41.9 5.4 67 222-302 395-461 (666)
302 2rep_A Kinesin-like protein KI 67.6 2.2 7.5E-05 41.7 2.1 25 175-199 107-133 (376)
303 1kgd_A CASK, peripheral plasma 67.5 1.7 5.8E-05 37.4 1.2 19 181-199 4-22 (180)
304 2pt7_A CAG-ALFA; ATPase, prote 67.1 2 6.9E-05 41.1 1.8 27 179-207 168-194 (330)
305 4b4t_M 26S protease regulatory 67.1 1.7 5.9E-05 43.3 1.3 55 142-199 175-232 (434)
306 1vee_A Proline-rich protein fa 67.0 4.2 0.00014 33.1 3.5 36 404-439 74-110 (134)
307 3eiq_A Eukaryotic initiation f 66.5 3.5 0.00012 40.0 3.4 71 224-304 281-355 (414)
308 4gl2_A Interferon-induced heli 66.5 3.1 0.00011 43.9 3.2 75 223-303 400-488 (699)
309 1lvg_A Guanylate kinase, GMP k 66.1 2.8 9.5E-05 36.7 2.4 19 181-199 3-21 (198)
310 4ag6_A VIRB4 ATPase, type IV s 64.5 3.9 0.00013 39.9 3.3 22 181-202 34-55 (392)
311 3ilm_A ALR3790 protein; rhodan 64.3 5.3 0.00018 32.9 3.6 37 404-440 56-93 (141)
312 2v3c_C SRP54, signal recogniti 63.0 35 0.0012 33.7 10.0 18 183-200 100-117 (432)
313 2bjv_A PSP operon transcriptio 62.9 3.5 0.00012 37.6 2.5 19 181-199 28-46 (265)
314 3nbx_X ATPase RAVA; AAA+ ATPas 62.7 4.7 0.00016 41.0 3.6 29 171-199 30-58 (500)
315 3hws_A ATP-dependent CLP prote 62.6 5.4 0.00019 38.3 3.9 19 181-199 50-68 (363)
316 2ewv_A Twitching motility prot 62.6 2.6 9.1E-05 41.0 1.6 27 180-208 134-160 (372)
317 3oiy_A Reverse gyrase helicase 62.6 12 0.00042 36.3 6.6 41 404-444 64-107 (414)
318 3io5_A Recombination and repai 62.2 10 0.00034 36.2 5.5 90 184-310 30-124 (333)
319 3vaa_A Shikimate kinase, SK; s 61.0 2.7 9.3E-05 36.6 1.3 19 181-199 24-42 (199)
320 1t6n_A Probable ATP-dependent 60.8 14 0.00048 32.2 6.1 42 404-445 82-128 (220)
321 3iij_A Coilin-interacting nucl 60.6 2.7 9.4E-05 35.8 1.2 21 180-200 9-29 (180)
322 2va8_A SSO2462, SKI2-type heli 60.4 30 0.001 36.4 9.6 74 224-303 253-362 (715)
323 3uk6_A RUVB-like 2; hexameric 60.3 5.7 0.0002 38.0 3.6 19 182-200 70-88 (368)
324 3cmw_A Protein RECA, recombina 60.3 6.8 0.00023 45.7 4.7 123 182-347 1431-1572(1706)
325 3fmp_B ATP-dependent RNA helic 60.3 1.8 6.3E-05 43.4 0.0 70 223-302 333-406 (479)
326 3tau_A Guanylate kinase, GMP k 59.8 2.9 0.0001 36.8 1.3 19 181-199 7-25 (208)
327 3g1w_A Sugar ABC transporter; 59.7 1E+02 0.0034 27.8 16.3 26 404-429 186-211 (305)
328 1z6g_A Guanylate kinase; struc 59.6 4.3 0.00015 36.0 2.4 20 180-199 21-40 (218)
329 3ksm_A ABC-type sugar transpor 59.5 93 0.0032 27.4 11.9 26 404-429 186-211 (276)
330 1q57_A DNA primase/helicase; d 59.4 12 0.00043 37.6 6.1 25 181-205 241-265 (503)
331 2qor_A Guanylate kinase; phosp 58.9 2.9 0.0001 36.6 1.1 21 179-199 9-29 (204)
332 3foz_A TRNA delta(2)-isopenten 58.8 2.9 9.9E-05 39.7 1.1 16 184-199 12-27 (316)
333 3exa_A TRNA delta(2)-isopenten 58.5 3 0.0001 39.7 1.1 17 183-199 4-20 (322)
334 2oxc_A Probable ATP-dependent 58.4 17 0.00057 32.1 6.2 43 404-446 92-139 (230)
335 3mm4_A Histidine kinase homolo 58.3 87 0.003 26.7 13.3 67 180-246 18-84 (206)
336 3a8t_A Adenylate isopentenyltr 58.1 3.1 0.0001 40.0 1.1 19 182-200 40-58 (339)
337 1ex7_A Guanylate kinase; subst 57.3 3.5 0.00012 35.9 1.3 16 183-198 2-17 (186)
338 1ofh_A ATP-dependent HSL prote 57.3 10 0.00036 34.9 4.8 19 181-199 49-67 (310)
339 1ry6_A Internal kinesin; kines 57.2 4.1 0.00014 39.5 1.9 19 181-199 82-102 (360)
340 3trf_A Shikimate kinase, SK; a 57.2 3.4 0.00012 35.3 1.2 19 182-200 5-23 (185)
341 2ze6_A Isopentenyl transferase 57.0 3.2 0.00011 37.9 1.1 16 184-199 3-18 (253)
342 3ney_A 55 kDa erythrocyte memb 56.7 3.5 0.00012 36.3 1.2 19 181-199 18-36 (197)
343 2j41_A Guanylate kinase; GMP, 56.7 3.4 0.00012 35.8 1.2 20 180-199 4-23 (207)
344 3a00_A Guanylate kinase, GMP k 56.3 3.9 0.00013 35.1 1.5 17 183-199 2-18 (186)
345 3fe2_A Probable ATP-dependent 55.9 19 0.00066 32.0 6.2 42 404-445 102-147 (242)
346 1zp6_A Hypothetical protein AT 55.8 2.6 8.8E-05 36.2 0.2 20 180-199 7-26 (191)
347 3lw7_A Adenylate kinase relate 55.7 3.5 0.00012 34.4 1.0 16 184-199 3-18 (179)
348 1ixz_A ATP-dependent metallopr 55.4 3.3 0.00011 37.5 0.9 51 144-199 12-66 (254)
349 3tr0_A Guanylate kinase, GMP k 55.2 3.9 0.00013 35.4 1.3 19 181-199 6-24 (205)
350 1qhx_A CPT, protein (chloramph 55.0 3.9 0.00013 34.6 1.2 18 182-199 3-20 (178)
351 3ice_A Transcription terminati 54.9 37 0.0013 33.3 8.2 33 168-200 157-192 (422)
352 2ffh_A Protein (FFH); SRP54, s 54.8 73 0.0025 31.3 10.6 19 182-200 98-116 (425)
353 1urh_A 3-mercaptopyruvate sulf 54.8 23 0.00079 32.4 6.7 37 404-440 230-267 (280)
354 2r44_A Uncharacterized protein 54.5 3.4 0.00012 39.1 0.9 22 178-199 42-63 (331)
355 1ojl_A Transcriptional regulat 54.0 5.7 0.0002 37.3 2.3 19 181-199 24-42 (304)
356 2qmh_A HPR kinase/phosphorylas 53.9 3.9 0.00013 36.2 1.1 19 181-199 33-51 (205)
357 1kag_A SKI, shikimate kinase I 53.8 4.6 0.00016 33.9 1.5 18 182-199 4-21 (173)
358 2j37_W Signal recognition part 53.3 58 0.002 32.9 9.8 17 184-200 103-119 (504)
359 1znw_A Guanylate kinase, GMP k 52.9 4.5 0.00015 35.4 1.3 22 178-199 16-37 (207)
360 3c8u_A Fructokinase; YP_612366 52.8 6 0.00021 34.6 2.1 27 181-209 21-47 (208)
361 4h1g_A Maltose binding protein 52.8 5.7 0.0002 42.3 2.3 25 175-199 454-480 (715)
362 3ber_A Probable ATP-dependent 52.5 45 0.0015 29.8 8.2 42 404-445 111-156 (249)
363 3tg1_B Dual specificity protei 52.4 10 0.00035 31.7 3.4 37 404-440 93-138 (158)
364 4gp7_A Metallophosphoesterase; 52.3 3.9 0.00013 34.8 0.7 20 181-200 8-27 (171)
365 2x8a_A Nuclear valosin-contain 52.3 2.1 7E-05 39.8 -1.1 53 144-199 6-61 (274)
366 1s96_A Guanylate kinase, GMP k 51.9 4.7 0.00016 36.0 1.3 21 179-199 13-33 (219)
367 3k4h_A Putative transcriptiona 51.9 1.3E+02 0.0044 26.8 13.3 27 404-430 191-217 (292)
368 3kta_A Chromosome segregation 51.8 6 0.0002 33.6 1.9 16 184-199 28-43 (182)
369 4akg_A Glutathione S-transfera 51.6 6.9 0.00023 47.9 2.9 49 152-201 890-942 (2695)
370 2c9o_A RUVB-like 1; hexameric 51.5 9.7 0.00033 38.0 3.7 28 299-330 297-324 (456)
371 2ius_A DNA translocase FTSK; n 51.4 7 0.00024 39.8 2.6 27 181-207 166-192 (512)
372 1y63_A LMAJ004144AAA protein; 51.3 4.9 0.00017 34.4 1.3 19 181-199 9-27 (184)
373 3lnc_A Guanylate kinase, GMP k 51.1 5.5 0.00019 35.5 1.6 20 180-199 25-44 (231)
374 2gxq_A Heat resistant RNA depe 50.9 37 0.0013 28.9 7.1 42 403-444 71-114 (207)
375 2xxa_A Signal recognition part 50.8 28 0.00096 34.4 6.9 18 183-200 101-118 (433)
376 1iy2_A ATP-dependent metallopr 50.7 4.2 0.00014 37.5 0.8 50 145-199 37-90 (278)
377 3dbi_A Sugar-binding transcrip 50.5 1.1E+02 0.0037 28.2 10.9 27 404-430 241-267 (338)
378 3kke_A LACI family transcripti 50.4 78 0.0027 28.7 9.7 27 404-430 196-222 (303)
379 4eun_A Thermoresistant glucoki 50.4 5.2 0.00018 34.8 1.3 19 181-199 28-46 (200)
380 2zj8_A DNA helicase, putative 50.3 26 0.0009 36.9 7.1 73 224-302 238-343 (720)
381 3cmw_A Protein RECA, recombina 50.2 6 0.00021 46.2 2.1 23 181-203 731-753 (1706)
382 3crm_A TRNA delta(2)-isopenten 50.0 4.9 0.00017 38.3 1.1 16 184-199 7-22 (323)
383 2i3b_A HCR-ntpase, human cance 49.8 8.4 0.00029 33.5 2.5 29 295-323 103-133 (189)
384 2v9p_A Replication protein E1; 49.7 6.5 0.00022 37.1 1.9 26 181-208 125-150 (305)
385 3fho_A ATP-dependent RNA helic 49.6 4.5 0.00015 41.1 0.8 71 224-304 358-432 (508)
386 1kht_A Adenylate kinase; phosp 49.5 5.2 0.00018 34.0 1.2 18 182-199 3-20 (192)
387 3dmq_A RNA polymerase-associat 49.3 19 0.00064 39.7 5.8 75 224-307 504-584 (968)
388 1ly1_A Polynucleotide kinase; 49.3 5.2 0.00018 33.7 1.1 16 184-199 4-19 (181)
389 3vkg_A Dynein heavy chain, cyt 49.0 9.2 0.00032 47.4 3.5 48 152-200 873-924 (3245)
390 3kb2_A SPBC2 prophage-derived 48.8 5.3 0.00018 33.3 1.1 16 184-199 3-18 (173)
391 1in4_A RUVB, holliday junction 48.8 13 0.00044 35.3 3.9 17 183-199 52-68 (334)
392 1ye8_A Protein THEP1, hypothet 48.8 7.6 0.00026 33.3 2.1 16 184-199 2-17 (178)
393 1u0j_A DNA replication protein 48.8 20 0.0007 33.0 5.1 43 155-200 74-122 (267)
394 1f2t_A RAD50 ABC-ATPase; DNA d 48.6 7.9 0.00027 32.1 2.1 15 184-198 25-39 (149)
395 3tbk_A RIG-I helicase domain; 48.5 28 0.00097 34.8 6.7 40 404-443 52-95 (555)
396 3iuy_A Probable ATP-dependent 48.4 23 0.00077 31.1 5.3 41 404-444 94-137 (228)
397 1rj9_A FTSY, signal recognitio 48.3 8.1 0.00028 36.4 2.3 26 182-209 102-127 (304)
398 3d3q_A TRNA delta(2)-isopenten 47.6 5.7 0.00019 38.2 1.1 16 184-199 9-24 (340)
399 2r62_A Cell division protease 47.5 4.3 0.00015 37.0 0.3 18 182-199 44-61 (268)
400 3k1j_A LON protease, ATP-depen 47.1 16 0.00054 37.9 4.6 22 178-199 56-77 (604)
401 1knq_A Gluconate kinase; ALFA/ 47.1 5.2 0.00018 33.7 0.7 18 182-199 8-25 (175)
402 3hs3_A Ribose operon repressor 47.0 1.5E+02 0.0053 26.2 17.4 174 226-430 13-203 (277)
403 1um8_A ATP-dependent CLP prote 47.0 6.7 0.00023 37.9 1.6 18 182-199 72-89 (376)
404 3eph_A TRNA isopentenyltransfe 46.9 5.7 0.00019 39.1 1.0 16 184-199 4-19 (409)
405 3nwj_A ATSK2; P loop, shikimat 46.9 7.4 0.00025 35.5 1.8 20 180-199 46-65 (250)
406 3kta_B Chromosome segregation 46.5 12 0.0004 32.1 2.9 41 296-340 85-125 (173)
407 3qf7_A RAD50; ABC-ATPase, ATPa 46.0 6 0.00021 38.3 1.1 17 184-200 25-41 (365)
408 1j8m_F SRP54, signal recogniti 45.9 75 0.0026 29.5 8.7 19 182-200 98-116 (297)
409 2z83_A Helicase/nucleoside tri 45.7 12 0.0004 37.4 3.2 67 224-302 191-258 (459)
410 3h1t_A Type I site-specific re 45.4 53 0.0018 33.6 8.3 78 224-307 440-527 (590)
411 3b9q_A Chloroplast SRP recepto 45.4 8.3 0.00028 36.3 1.9 27 181-209 99-125 (302)
412 2bdt_A BH3686; alpha-beta prot 45.3 6.5 0.00022 33.6 1.1 17 183-199 3-19 (189)
413 4f67_A UPF0176 protein LPG2838 45.2 14 0.00046 34.2 3.3 37 404-440 181-218 (265)
414 3uie_A Adenylyl-sulfate kinase 45.1 5.9 0.0002 34.4 0.8 19 181-199 24-42 (200)
415 2p6r_A Afuhel308 helicase; pro 44.9 30 0.001 36.4 6.4 73 225-303 244-346 (702)
416 3miz_A Putative transcriptiona 44.4 1.7E+02 0.0057 26.3 11.0 27 404-430 196-222 (301)
417 4a2p_A RIG-I, retinoic acid in 44.4 37 0.0013 34.0 6.9 40 404-443 55-98 (556)
418 3cm0_A Adenylate kinase; ATP-b 44.2 5.2 0.00018 34.0 0.3 19 181-199 3-21 (186)
419 4fcw_A Chaperone protein CLPB; 44.2 6.7 0.00023 36.4 1.1 18 183-200 48-65 (311)
420 1gvn_B Zeta; postsegregational 44.0 7.3 0.00025 36.3 1.3 17 183-199 34-50 (287)
421 3g5u_A MCG1178, multidrug resi 43.7 7.8 0.00027 44.2 1.6 30 296-325 543-572 (1284)
422 3d8b_A Fidgetin-like protein 1 43.6 6.7 0.00023 37.7 1.0 19 181-199 116-134 (357)
423 3t61_A Gluconokinase; PSI-biol 43.4 7.1 0.00024 33.8 1.1 17 183-199 19-35 (202)
424 3jy6_A Transcriptional regulat 43.3 1.7E+02 0.0059 25.7 17.0 177 226-430 10-206 (276)
425 1gku_B Reverse gyrase, TOP-RG; 43.3 22 0.00077 39.5 5.3 72 224-307 276-352 (1054)
426 1g8p_A Magnesium-chelatase 38 43.0 6.9 0.00024 37.0 1.0 18 182-199 45-62 (350)
427 2eg4_A Probable thiosulfate su 42.8 13 0.00045 33.0 2.8 37 404-440 184-220 (230)
428 2pl3_A Probable ATP-dependent 42.7 27 0.00092 30.7 4.9 41 404-444 97-141 (236)
429 2qt1_A Nicotinamide riboside k 42.6 4.9 0.00017 35.0 -0.2 23 177-199 16-38 (207)
430 3asz_A Uridine kinase; cytidin 42.3 10 0.00034 33.0 1.9 18 182-199 6-23 (211)
431 4b4t_K 26S protease regulatory 42.0 5.6 0.00019 39.5 0.2 54 143-199 167-223 (428)
432 3jvd_A Transcriptional regulat 41.8 2.1E+02 0.0072 26.3 13.0 161 237-430 80-256 (333)
433 4ddu_A Reverse gyrase; topoiso 41.7 52 0.0018 36.8 7.9 41 404-444 121-164 (1104)
434 1e0c_A Rhodanese, sulfurtransf 41.6 14 0.00049 33.6 2.9 37 404-440 223-260 (271)
435 3tif_A Uncharacterized ABC tra 41.6 7.1 0.00024 35.2 0.7 25 181-207 30-54 (235)
436 2c95_A Adenylate kinase 1; tra 41.5 8.8 0.0003 32.7 1.3 19 181-199 8-26 (196)
437 3g85_A Transcriptional regulat 41.3 46 0.0016 29.9 6.4 27 404-430 187-213 (289)
438 2w00_A HSDR, R.ECOR124I; ATP-b 41.3 1E+02 0.0034 34.2 10.0 39 222-260 536-582 (1038)
439 1m7g_A Adenylylsulfate kinase; 41.2 9 0.00031 33.5 1.4 30 169-199 13-42 (211)
440 1zuh_A Shikimate kinase; alpha 41.1 8.1 0.00028 32.2 1.0 18 183-200 8-25 (168)
441 1vec_A ATP-dependent RNA helic 41.0 43 0.0015 28.5 5.9 41 404-444 71-116 (206)
442 1gm5_A RECG; helicase, replica 40.9 51 0.0017 35.3 7.4 43 404-446 417-463 (780)
443 1via_A Shikimate kinase; struc 40.6 9.3 0.00032 32.2 1.3 16 184-199 6-21 (175)
444 1htw_A HI0065; nucleotide-bind 40.4 9.4 0.00032 32.1 1.3 26 181-208 32-57 (158)
445 4a2q_A RIG-I, retinoic acid in 40.4 47 0.0016 35.5 7.1 64 380-443 272-339 (797)
446 3gyb_A Transcriptional regulat 40.2 1.4E+02 0.0049 26.3 9.6 167 235-430 19-201 (280)
447 2rhm_A Putative kinase; P-loop 40.1 8.4 0.00029 32.8 1.0 18 182-199 5-22 (193)
448 2f1r_A Molybdopterin-guanine d 40.1 6.2 0.00021 33.7 0.1 24 184-209 4-27 (171)
449 3f9v_A Minichromosome maintena 39.8 11 0.00039 39.0 2.1 16 184-199 329-344 (595)
450 1tev_A UMP-CMP kinase; ploop, 39.6 8.9 0.00031 32.5 1.1 17 183-199 4-20 (196)
451 1qpz_A PURA, protein (purine n 39.4 1.7E+02 0.0057 27.0 10.3 27 404-430 237-263 (340)
452 3qks_A DNA double-strand break 39.4 13 0.00044 32.5 2.1 23 184-208 25-47 (203)
453 1tf7_A KAIC; homohexamer, hexa 39.4 49 0.0017 33.4 6.8 124 179-339 278-413 (525)
454 2v54_A DTMP kinase, thymidylat 39.2 9.8 0.00034 32.7 1.3 19 181-199 3-21 (204)
455 2og2_A Putative signal recogni 39.2 11 0.00039 36.3 1.8 26 182-209 157-182 (359)
456 3auy_A DNA double-strand break 38.7 8.8 0.0003 37.1 1.0 15 185-199 28-42 (371)
457 2bwj_A Adenylate kinase 5; pho 38.4 9.9 0.00034 32.5 1.2 19 181-199 11-29 (199)
458 3pxg_A Negative regulator of g 38.4 14 0.00047 37.0 2.4 20 181-200 200-219 (468)
459 2cbz_A Multidrug resistance-as 38.1 8.7 0.0003 34.6 0.7 26 181-208 30-55 (237)
460 3tb6_A Arabinose metabolism tr 38.0 2.1E+02 0.0073 25.3 15.0 38 385-430 187-226 (298)
461 3dmn_A Putative DNA helicase; 38.0 1.7E+02 0.006 24.3 9.4 50 383-437 45-94 (174)
462 2pez_A Bifunctional 3'-phospho 38.0 8.9 0.00031 32.4 0.8 19 181-199 4-22 (179)
463 1nks_A Adenylate kinase; therm 37.8 9.5 0.00032 32.3 0.9 16 184-199 3-18 (194)
464 1pjr_A PCRA; DNA repair, DNA r 37.7 3.3E+02 0.011 28.5 13.2 41 404-445 351-391 (724)
465 2h54_A Caspase-1; allosteric s 37.6 49 0.0017 28.3 5.5 43 404-447 43-96 (178)
466 1nij_A Hypothetical protein YJ 37.6 22 0.00075 33.5 3.5 26 297-325 151-176 (318)
467 1w36_B RECB, exodeoxyribonucle 37.5 32 0.0011 38.8 5.4 61 184-245 18-78 (1180)
468 1e6c_A Shikimate kinase; phosp 37.3 11 0.00039 31.3 1.3 17 183-199 3-19 (173)
469 3fb4_A Adenylate kinase; psych 37.2 10 0.00035 33.1 1.1 16 184-199 2-17 (216)
470 3nh6_A ATP-binding cassette SU 37.1 5.8 0.0002 37.5 -0.6 30 296-325 207-236 (306)
471 1zd8_A GTP:AMP phosphotransfer 37.0 9.9 0.00034 33.6 1.0 18 182-199 7-24 (227)
472 2iyv_A Shikimate kinase, SK; t 36.9 12 0.00042 31.6 1.5 17 183-199 3-19 (184)
473 1cke_A CK, MSSA, protein (cyti 36.9 11 0.00038 33.1 1.2 18 183-200 6-23 (227)
474 1sgw_A Putative ABC transporte 36.9 10 0.00035 33.7 1.0 21 179-199 32-52 (214)
475 2ixe_A Antigen peptide transpo 36.7 8.9 0.0003 35.4 0.6 29 179-209 42-70 (271)
476 1qde_A EIF4A, translation init 36.7 35 0.0012 29.6 4.6 41 404-444 82-126 (224)
477 3h11_B Caspase-8; cell death, 36.7 45 0.0016 30.6 5.5 43 404-447 17-80 (271)
478 1qf9_A UMP/CMP kinase, protein 36.4 10 0.00036 32.1 1.0 16 184-199 8-23 (194)
479 3c3k_A Alanine racemase; struc 36.4 2.3E+02 0.0078 25.1 14.0 27 404-430 183-209 (285)
480 3aay_A Putative thiosulfate su 36.3 28 0.00096 31.7 4.0 36 403-438 76-113 (277)
481 2fep_A Catabolite control prot 36.2 2.3E+02 0.0079 25.2 10.9 27 404-430 194-220 (289)
482 3qk7_A Transcriptional regulat 36.1 2.3E+02 0.008 25.2 12.5 27 404-430 186-212 (294)
483 2olj_A Amino acid ABC transpor 36.1 9.2 0.00032 35.2 0.6 29 179-209 47-75 (263)
484 1uar_A Rhodanese; sulfurtransf 35.9 25 0.00087 32.2 3.7 37 404-440 233-271 (285)
485 2ouc_A Dual specificity protei 35.8 21 0.00072 28.6 2.7 37 404-440 83-128 (142)
486 2yvu_A Probable adenylyl-sulfa 35.6 10 0.00035 32.2 0.8 19 181-199 12-30 (186)
487 1ukz_A Uridylate kinase; trans 35.5 11 0.00039 32.4 1.1 16 184-199 17-32 (203)
488 2if2_A Dephospho-COA kinase; a 35.5 11 0.00038 32.5 1.0 16 184-199 3-18 (204)
489 2vli_A Antibiotic resistance p 35.4 12 0.00041 31.5 1.2 19 182-200 5-23 (183)
490 3dl0_A Adenylate kinase; phosp 35.4 11 0.00039 32.8 1.1 16 184-199 2-17 (216)
491 2bbw_A Adenylate kinase 4, AK4 35.3 11 0.00039 33.7 1.1 18 182-199 27-44 (246)
492 1urh_A 3-mercaptopyruvate sulf 35.3 23 0.00079 32.4 3.2 37 404-440 86-124 (280)
493 1zak_A Adenylate kinase; ATP:A 34.9 13 0.00045 32.6 1.4 18 182-199 5-22 (222)
494 1u6t_A SH3 domain-binding glut 34.9 37 0.0013 27.2 3.9 38 410-447 12-49 (121)
495 1xjc_A MOBB protein homolog; s 34.8 19 0.00063 30.7 2.3 15 184-198 6-20 (169)
496 2ghi_A Transport protein; mult 34.8 11 0.00036 34.6 0.7 30 296-325 172-201 (260)
497 2ff7_A Alpha-hemolysin translo 34.8 10 0.00035 34.4 0.7 31 295-325 161-191 (247)
498 2jaq_A Deoxyguanosine kinase; 34.6 12 0.0004 32.1 1.0 14 185-198 3-16 (205)
499 3lwd_A 6-phosphogluconolactona 34.4 63 0.0022 28.7 5.9 55 233-305 15-69 (226)
500 1g41_A Heat shock protein HSLU 34.4 13 0.00044 37.1 1.3 17 183-199 51-67 (444)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=2e-54 Score=443.46 Aligned_cols=316 Identities=43% Similarity=0.756 Sum_probs=292.0
Q ss_pred cccccCCCCCCCCCcccccCCCCCCccCCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCcc
Q 013173 117 EEENTGINFDAYEDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKT 196 (448)
Q Consensus 117 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~f~~l~L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT 196 (448)
....++++|+.|+++++++++.++|.++.+|++++|++.+++++.++||.+|||+|+++||.+++|+|++++|+||||||
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT 107 (434)
T 2db3_A 28 SGIASGIHFSKYNNIPVKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKT 107 (434)
T ss_dssp CCCCCCTTGGGGGGSCEEEESSSCCCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHH
T ss_pred cCcccccChhhhcCceeEecCCCCCCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCch
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHHhcCccE
Q 013173 197 AAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDI 276 (448)
Q Consensus 197 ~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~I 276 (448)
++|++|+++.++..... ....++++|||+|||+||.|+++++++++...++++.+++||.....+...+..+++|
T Consensus 108 ~a~~lpil~~l~~~~~~-----~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~I 182 (434)
T 2db3_A 108 AAFLLPILSKLLEDPHE-----LELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHV 182 (434)
T ss_dssp HHHHHHHHHHHHHSCCC-----CCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSE
T ss_pred HHHHHHHHHHHHhcccc-----cccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCE
Confidence 99999999998865421 1234678999999999999999999999988889999999999999998888899999
Q ss_pred EEeChHHHHHHHhcccccCCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcC
Q 013173 277 LVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLAN 356 (448)
Q Consensus 277 lv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~ 356 (448)
+|+||++|++++.+..+.+.++++|||||||+|++++|.+++..|+..+.. +..+|+++||||++.+++.++..++.+
T Consensus 183 vv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~--~~~~q~l~~SAT~~~~~~~~~~~~l~~ 260 (434)
T 2db3_A 183 VIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTM--RPEHQTLMFSATFPEEIQRMAGEFLKN 260 (434)
T ss_dssp EEECHHHHHHHHHTTSCCCTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTS--CSSCEEEEEESCCCHHHHHHHHTTCSS
T ss_pred EEEChHHHHHHHHhCCcccccCCeEEEccHhhhhccCcHHHHHHHHHhcCC--CCCceEEEEeccCCHHHHHHHHHhccC
Confidence 999999999999988888999999999999999999999999999998743 456899999999999999999999999
Q ss_pred cEEEEecccccccCceeEEEEEecccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCCeEEecC
Q 013173 357 YIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHG 436 (448)
Q Consensus 357 ~~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg 436 (448)
+..+.+.........+.|.+..+....|...|.+++... ..++||||++++.|+.+++.|...++++..+||
T Consensus 261 ~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~--------~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg 332 (434)
T 2db3_A 261 YVFVAIGIVGGACSDVKQTIYEVNKYAKRSKLIEILSEQ--------ADGTIVFVETKRGADFLASFLSEKEFPTTSIHG 332 (434)
T ss_dssp CEEEEESSTTCCCTTEEEEEEECCGGGHHHHHHHHHHHC--------CTTEEEECSSHHHHHHHHHHHHHTTCCEEEEST
T ss_pred CEEEEeccccccccccceEEEEeCcHHHHHHHHHHHHhC--------CCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeC
Confidence 999999888888889999999999999999999998875 334999999999999999999999999999999
Q ss_pred CCCHHHHHHhh
Q 013173 437 DRTQQRTSIEI 447 (448)
Q Consensus 437 ~~~q~eR~~~l 447 (448)
++++.+|++++
T Consensus 333 ~~~~~~R~~~l 343 (434)
T 2db3_A 333 DRLQSQREQAL 343 (434)
T ss_dssp TSCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 99999999876
No 2
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=9e-48 Score=390.69 Aligned_cols=309 Identities=60% Similarity=0.974 Sum_probs=273.1
Q ss_pred cccCCCCCCccCCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhc
Q 013173 133 VETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQY 212 (448)
Q Consensus 133 v~~~~~~~~~~~~~f~~l~L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~ 212 (448)
+.+++.++|.++.+|++++|++.+.+++..+||.+|||+|+++||.++.++|++++||||||||++|++|+++.+.....
T Consensus 3 ~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~ 82 (417)
T 2i4i_A 3 VEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGP 82 (417)
T ss_dssp EEEESTTCCCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCC
T ss_pred cccCCCcCCcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccc
Confidence 45667888999999999999999999999999999999999999999999999999999999999999999998876432
Q ss_pred c--------cCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHH
Q 013173 213 V--------QRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRL 284 (448)
Q Consensus 213 ~--------~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l 284 (448)
. .........++++|||+||++|+.|+++.++++....++++..++||.....+...+..+++|+|+||++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l 162 (417)
T 2i4i_A 83 GEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRL 162 (417)
T ss_dssp CHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHH
T ss_pred cchhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHH
Confidence 1 00001123457899999999999999999999988888999999999999988888888999999999999
Q ss_pred HHHHhcccccCCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEecc
Q 013173 285 VDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGR 364 (448)
Q Consensus 285 ~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~ 364 (448)
.+++....+.+.++++|||||||++++++|.+.+..++..+..+....+|+++||||++.++..++..++.++..+.+..
T Consensus 163 ~~~l~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 242 (417)
T 2i4i_A 163 VDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR 242 (417)
T ss_dssp HHHHHTTSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC-
T ss_pred HHHHHcCCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCC
Confidence 99999888889999999999999999999999999999876555455789999999999999999999999999998888
Q ss_pred cccccCceeEEEEEecccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCCHHHHH
Q 013173 365 VGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTS 444 (448)
Q Consensus 365 ~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~ 444 (448)
.......+.+.+..+...+|...+.+++.... ...++||||++++.|+.+++.|...++.+..+||++++.+|+
T Consensus 243 ~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~------~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~ 316 (417)
T 2i4i_A 243 VGSTSENITQKVVWVEESDKRSFLLDLLNATG------KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDRE 316 (417)
T ss_dssp ---CCSSEEEEEEECCGGGHHHHHHHHHHTCC------TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHH
T ss_pred CCCCccCceEEEEEeccHhHHHHHHHHHHhcC------CCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHH
Confidence 77788899999999998999999988887642 267899999999999999999999999999999999999999
Q ss_pred Hhh
Q 013173 445 IEI 447 (448)
Q Consensus 445 ~~l 447 (448)
+++
T Consensus 317 ~~~ 319 (417)
T 2i4i_A 317 EAL 319 (417)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 3
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=1.8e-45 Score=373.40 Aligned_cols=285 Identities=32% Similarity=0.477 Sum_probs=259.5
Q ss_pred ccCCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCC
Q 013173 142 PAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRT 221 (448)
Q Consensus 142 ~~~~~f~~l~L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~ 221 (448)
.+..+|++++|++.+++++..+||.+|+|+|+++|+.++.++|++++++||||||++|++|+++.+... .
T Consensus 34 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~----------~ 103 (410)
T 2j0s_A 34 DVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ----------V 103 (410)
T ss_dssp CCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTT----------S
T ss_pred cCCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhc----------c
Confidence 456689999999999999999999999999999999999999999999999999999999999876322 2
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEE
Q 013173 222 VYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYL 301 (448)
Q Consensus 222 ~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~l 301 (448)
..+++|||+||++|+.|+++.+++++...++++..++|+.....+...+..+++|+|+||++|.+++....+.+..+++|
T Consensus 104 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~v 183 (410)
T 2j0s_A 104 RETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKML 183 (410)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEE
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEE
Confidence 34579999999999999999999999888999999999999999888888899999999999999999888889999999
Q ss_pred EEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEecccccccCceeEEEEEecc
Q 013173 302 ALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHE 381 (448)
Q Consensus 302 VlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~ 381 (448)
||||||++++++|...+..++..+ +...|+++||||++.++..++..++.++..+.+.........+.+.+..+..
T Consensus 184 ViDEah~~~~~~~~~~~~~i~~~~----~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (410)
T 2j0s_A 184 VLDEADEMLNKGFKEQIYDVYRYL----PPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVER 259 (410)
T ss_dssp EEETHHHHTSTTTHHHHHHHHTTS----CTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESS
T ss_pred EEccHHHHHhhhhHHHHHHHHHhC----ccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCc
Confidence 999999999999999999998887 6778999999999999999999999999998888777788889998888766
Q ss_pred cc-hHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCCHHHHHHhh
Q 013173 382 SD-KRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 382 ~~-k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
.. |...|.+++.... ..++||||++++.|+.+++.|...++.+..+||++++.+|++++
T Consensus 260 ~~~k~~~l~~~~~~~~-------~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~ 319 (410)
T 2j0s_A 260 EEWKFDTLCDLYDTLT-------ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIM 319 (410)
T ss_dssp TTHHHHHHHHHHHHHT-------SSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHH
T ss_pred HHhHHHHHHHHHHhcC-------CCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHH
Confidence 55 7888888887653 56899999999999999999999999999999999999999875
No 4
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=5e-43 Score=355.18 Aligned_cols=287 Identities=31% Similarity=0.477 Sum_probs=254.6
Q ss_pred CCccCCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCC
Q 013173 140 VPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGS 219 (448)
Q Consensus 140 ~~~~~~~f~~l~L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~ 219 (448)
.+....+|++++|++.+.+.+.+++|.+|+++|+++|+.++.++|++++++||||||++|++|+++.+...
T Consensus 35 ~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~--------- 105 (414)
T 3eiq_A 35 WNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD--------- 105 (414)
T ss_dssp CCCCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTT---------
T ss_pred ccchhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhc---------
Confidence 34556789999999999999999999999999999999999999999999999999999999999877432
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHHh-cCccEEEeChHHHHHHHhcccccCCCe
Q 013173 220 RTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELE-RGVDILVATPGRLVDLLERARVSLQMI 298 (448)
Q Consensus 220 ~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~-~~~~Ilv~Tp~~l~~~l~~~~~~l~~v 298 (448)
...+++||++||++|+.|+++.++++....++.+..++|+.....+...+. ..++|+|+||++|.+++....+.+.++
T Consensus 106 -~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~ 184 (414)
T 3eiq_A 106 -LKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYI 184 (414)
T ss_dssp -SCSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTC
T ss_pred -CCceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccC
Confidence 234569999999999999999999999888999999999999888877776 568999999999999999888889999
Q ss_pred eEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEecccccccCceeEEEEE
Q 013173 299 RYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEF 378 (448)
Q Consensus 299 ~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~ 378 (448)
++|||||||++++++|...+..++..+ +...|+++||||++.++..++..++.++..+.+.........+.+.+..
T Consensus 185 ~~vViDEah~~~~~~~~~~~~~~~~~~----~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (414)
T 3eiq_A 185 KMFVLDEADEMLSRGFKDQIYDIFQKL----NSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYIN 260 (414)
T ss_dssp CEEEECSHHHHHHTTTHHHHHHHHTTS----CTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEE
T ss_pred cEEEEECHHHhhccCcHHHHHHHHHhC----CCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEE
Confidence 999999999999999999999999888 6788999999999999999999999999998887777778888888877
Q ss_pred ecccc-hHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCCHHHHHHhh
Q 013173 379 VHESD-KRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 379 ~~~~~-k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
+...+ |...+.+++.... ..++||||++++.|+.+++.|...++.+..+||++++.+|.+++
T Consensus 261 ~~~~~~~~~~l~~~~~~~~-------~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~ 323 (414)
T 3eiq_A 261 VEREEWKLDTLCDLYETLT-------ITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIM 323 (414)
T ss_dssp CSSSTTHHHHHHHHHHSSC-------CSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHH
T ss_pred eChHHhHHHHHHHHHHhCC-------CCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHH
Confidence 76544 7777777776542 56899999999999999999999999999999999999999875
No 5
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=5.6e-43 Score=369.83 Aligned_cols=288 Identities=28% Similarity=0.429 Sum_probs=233.6
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHhHHhhHh--CCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEE
Q 013173 152 LGEALNLNIRRCKYVKPTPVQRHAIPISI--GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALIL 229 (448)
Q Consensus 152 L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~--~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil 229 (448)
|++.+++++.++||.+|+|+|.++|+.++ .++|++++||||||||++|++|+++.+...... ....+++|||
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~------~~~~~~~lil 152 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD------SQYMVKAVIV 152 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS------STTSCCEEEE
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhcccc------ccCCeeEEEE
Confidence 99999999999999999999999999999 678999999999999999999999998765421 2335679999
Q ss_pred cCcHHHHHHHHHHHHHhcc----cCCcEEEEEECCCChHHHHHHH-hcCccEEEeChHHHHHHHhcc-cccCCCeeEEEE
Q 013173 230 APTRELSSQIHVEAKKFSY----QTGVKVVVAYGGAPINQQLREL-ERGVDILVATPGRLVDLLERA-RVSLQMIRYLAL 303 (448)
Q Consensus 230 ~PtreL~~qi~~~~~~~~~----~~~~~~~~~~gg~~~~~~~~~l-~~~~~Ilv~Tp~~l~~~l~~~-~~~l~~v~~lVl 303 (448)
+||++||.|+++.++++.. ...+.+..++|+.....+...+ ..+++|+|+||++|++++.+. ...++.+++|||
T Consensus 153 ~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lVi 232 (563)
T 3i5x_A 153 APTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVL 232 (563)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred cCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEE
Confidence 9999999999999999743 2346688889999988777766 447999999999999999765 346889999999
Q ss_pred cCCcccccCCCHHHHHHHHHHcC---CCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEeccc----ccccCceeEEE
Q 013173 304 DEADRMLDMGFEPQIRKIVQQMD---MPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRV----GSSTDLIVQRV 376 (448)
Q Consensus 304 DEah~ll~~gf~~~i~~i~~~l~---~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~----~~~~~~i~q~~ 376 (448)
||||+|++++|.+.+..|+..+. ......+|+++||||+++.+..++..++.++..+.+... ......+.+.+
T Consensus 233 DEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (563)
T 3i5x_A 233 DEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSV 312 (563)
T ss_dssp ETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEE
T ss_pred eCHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEE
Confidence 99999999999999999887762 222446899999999999999999999988776665432 23345666666
Q ss_pred EEeccc-chHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHC---CCCeEEecCCCCHHHHHHhh
Q 013173 377 EFVHES-DKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN---GFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 377 ~~~~~~-~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~---g~~~~~iHg~~~q~eR~~~l 447 (448)
...... .+...+++.+....... ....++||||+|++.|+.+++.|... ++.+..+||+|++.+|++++
T Consensus 313 ~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~ 385 (563)
T 3i5x_A 313 VISEKFANSIFAAVEHIKKQIKER--DSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLV 385 (563)
T ss_dssp EEESSTTHHHHHHHHHHHHHHHHT--TTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHH
T ss_pred EECchhHhhHHHHHHHHHHHHhhc--CCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHH
Confidence 665443 33333444333322211 12678999999999999999999876 99999999999999999875
No 6
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=4.6e-42 Score=346.92 Aligned_cols=283 Identities=30% Similarity=0.460 Sum_probs=250.1
Q ss_pred cCCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCC
Q 013173 143 AVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTV 222 (448)
Q Consensus 143 ~~~~f~~l~L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~ 222 (448)
...+|++++|++.+.+++.++||.+|+|+|+++++.++.++|+++++|||+|||++|++|++..+... ..
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~----------~~ 88 (400)
T 1s2m_A 19 KGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPK----------LN 88 (400)
T ss_dssp --CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTT----------SC
T ss_pred ccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhc----------cC
Confidence 45679999999999999999999999999999999999999999999999999999999999876432 23
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEE
Q 013173 223 YPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLA 302 (448)
Q Consensus 223 ~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lV 302 (448)
++++||++||++|+.|+++.++++....++++..++|+.....+...+...++|+|+||++|.+++......+.++++||
T Consensus 89 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vI 168 (400)
T 1s2m_A 89 KIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFI 168 (400)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEE
T ss_pred CccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEE
Confidence 45699999999999999999999988888999999999998888777778899999999999999988777899999999
Q ss_pred EcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEecccccccCceeEEEEEeccc
Q 013173 303 LDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHES 382 (448)
Q Consensus 303 lDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~ 382 (448)
|||||++++.+|...+..++..+ +...|+++||||++..+..++..++.++..+.+.. ......+.+++..+...
T Consensus 169 iDEaH~~~~~~~~~~~~~i~~~~----~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 243 (400)
T 1s2m_A 169 MDEADKMLSRDFKTIIEQILSFL----PPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLME-ELTLKGITQYYAFVEER 243 (400)
T ss_dssp EESHHHHSSHHHHHHHHHHHTTS----CSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCS-SCBCTTEEEEEEECCGG
T ss_pred EeCchHhhhhchHHHHHHHHHhC----CcCceEEEEEecCCHHHHHHHHHHcCCCeEEEecc-ccccCCceeEEEEechh
Confidence 99999999888888888887776 66789999999999999999999998887765542 34556788888888888
Q ss_pred chHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCCHHHHHHhh
Q 013173 383 DKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 383 ~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
.|...+..++.... ..++||||++++.|+.+++.|...++.+..+||++++.+|++++
T Consensus 244 ~k~~~l~~~~~~~~-------~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~ 301 (400)
T 1s2m_A 244 QKLHCLNTLFSKLQ-------INQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVF 301 (400)
T ss_dssp GHHHHHHHHHHHSC-------CSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHH
T ss_pred hHHHHHHHHHhhcC-------CCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHH
Confidence 88888888887642 67899999999999999999999999999999999999999875
No 7
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=4.7e-43 Score=333.18 Aligned_cols=250 Identities=54% Similarity=0.900 Sum_probs=210.3
Q ss_pred CCCCCCcccccCCCCCCc--cCCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhh
Q 013173 125 FDAYEDIPVETSGENVPP--AVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFP 202 (448)
Q Consensus 125 ~~~~~~~~v~~~~~~~~~--~~~~f~~l~L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lp 202 (448)
|+.|+++++.+++...|. ++.+|++++|++.+.+++..+||.+|+|+|.++|+.++.++|+++++|||||||++|++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~ 80 (253)
T 1wrb_A 1 FDKYDSIPVSVTGPDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIP 80 (253)
T ss_dssp --CCCCCCCCEECCSSSCCSCCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHH
T ss_pred CcchhhCceeeeCCCCCCCCccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHH
Confidence 567888888888888877 889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChH
Q 013173 203 IISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPG 282 (448)
Q Consensus 203 il~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~ 282 (448)
+++.+........ ......++++|||+||++|+.|+++.++++....++++..++||.....+...+..+++|+|+||+
T Consensus 81 ~l~~l~~~~~~~~-~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~ 159 (253)
T 1wrb_A 81 IINHLVCQDLNQQ-RYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPG 159 (253)
T ss_dssp HHHHHHTTCC-------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHH
T ss_pred HHHHHHhhccccc-cccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHH
Confidence 9998875432110 011234578999999999999999999999888889999999999988888888888999999999
Q ss_pred HHHHHHhcccccCCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEe
Q 013173 283 RLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAV 362 (448)
Q Consensus 283 ~l~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v 362 (448)
+|.+++....+.+.++++|||||||+|++++|..++..|+..+..+....+|+++||||++++++.+++.++.+++.+.+
T Consensus 160 ~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~ 239 (253)
T 1wrb_A 160 RLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTV 239 (253)
T ss_dssp HHHHHHHTTSBCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEE
T ss_pred HHHHHHHcCCCChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEE
Confidence 99999998888899999999999999999999999999999765443346899999999999999999999999999999
Q ss_pred cccccccCceeEE
Q 013173 363 GRVGSSTDLIVQR 375 (448)
Q Consensus 363 ~~~~~~~~~i~q~ 375 (448)
+..+....++.|+
T Consensus 240 ~~~~~~~~~i~q~ 252 (253)
T 1wrb_A 240 GRVGSTSDSIKQE 252 (253)
T ss_dssp C------------
T ss_pred CCCCCCcCCceec
Confidence 8887777777775
No 8
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=1.6e-41 Score=341.50 Aligned_cols=282 Identities=30% Similarity=0.444 Sum_probs=248.7
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCc
Q 013173 145 NTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYP 224 (448)
Q Consensus 145 ~~f~~l~L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~ 224 (448)
.+|++++|++.+.+++.++||.+|+|+|.++++.++.++|+++++|||+|||++|++|++..+... ...+
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~----------~~~~ 77 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV----------TGQV 77 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCC----------TTCC
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhccc----------CCCe
Confidence 469999999999999999999999999999999999999999999999999999999999876432 2245
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhcccC-CcEEEEEECCCChHHHHHHHhcC-ccEEEeChHHHHHHHhcccccCCCeeEEE
Q 013173 225 LALILAPTRELSSQIHVEAKKFSYQT-GVKVVVAYGGAPINQQLRELERG-VDILVATPGRLVDLLERARVSLQMIRYLA 302 (448)
Q Consensus 225 ~~lil~PtreL~~qi~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~-~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lV 302 (448)
++||++||++|+.|+++.++++.... ++++..++|+.....+...+..+ ++|+|+||++|.+++....+.+.++++||
T Consensus 78 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vV 157 (391)
T 1xti_A 78 SVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFI 157 (391)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEE
T ss_pred eEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEE
Confidence 69999999999999999999997654 78999999999988777766654 79999999999999988888899999999
Q ss_pred EcCCcccccC-CCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEecccc-cccCceeEEEEEec
Q 013173 303 LDEADRMLDM-GFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVG-SSTDLIVQRVEFVH 380 (448)
Q Consensus 303 lDEah~ll~~-gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~-~~~~~i~q~~~~~~ 380 (448)
|||||+++++ +|...+..++..+ +...|+++||||++..+..++..++.++..+.+.... .....+.+.+..+.
T Consensus 158 iDEaH~~~~~~~~~~~~~~~~~~~----~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (391)
T 1xti_A 158 LDECDKMLEQLDMRRDVQEIFRMT----PHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLK 233 (391)
T ss_dssp ECSHHHHTSSHHHHHHHHHHHHTS----CSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECC
T ss_pred EeCHHHHhhccchHHHHHHHHhhC----CCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcC
Confidence 9999999885 7888888888776 6678999999999999999999999999887765443 34467788888888
Q ss_pred ccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCCHHHHHHhh
Q 013173 381 ESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 381 ~~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
...|...+.+++.... ..++||||++++.|+.+++.|...++++..+||++++.+|++++
T Consensus 234 ~~~~~~~l~~~l~~~~-------~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~ 293 (391)
T 1xti_A 234 DNEKNRKLFDLLDVLE-------FNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRY 293 (391)
T ss_dssp GGGHHHHHHHHHHHSC-------CSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHH
T ss_pred chhHHHHHHHHHHhcC-------CCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHH
Confidence 8889888888887652 67899999999999999999999999999999999999998875
No 9
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=4.2e-42 Score=324.67 Aligned_cols=225 Identities=45% Similarity=0.763 Sum_probs=205.9
Q ss_pred ccccCCCCCCccCCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhh
Q 013173 132 PVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQ 211 (448)
Q Consensus 132 ~v~~~~~~~~~~~~~f~~l~L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~ 211 (448)
.+...+.+.|.++.+|++++|++.+.+++.++||.+|+|+|.++|+.++.|+|+++++|||||||++|++|++..+....
T Consensus 16 ~i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~ 95 (242)
T 3fe2_A 16 EITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQP 95 (242)
T ss_dssp TEEEESSCCCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSC
T ss_pred ceEEeCCCCCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhcc
Confidence 34456778899999999999999999999999999999999999999999999999999999999999999999886543
Q ss_pred cccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcc
Q 013173 212 YVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA 291 (448)
Q Consensus 212 ~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~ 291 (448)
.. ....++++|||+||++|+.|+++.++++....++++..++||.....+...+..+++|+|+||++|.+++...
T Consensus 96 ~~-----~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~ 170 (242)
T 3fe2_A 96 FL-----ERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECG 170 (242)
T ss_dssp CC-----CTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHT
T ss_pred cc-----ccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcC
Confidence 21 1234678999999999999999999999888899999999999999998999999999999999999999988
Q ss_pred cccCCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEeccc
Q 013173 292 RVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRV 365 (448)
Q Consensus 292 ~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~ 365 (448)
...+.++++|||||||+|++++|...+..|+..+ +..+|+++||||+++++..++..++.+++.+.++..
T Consensus 171 ~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~----~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 240 (242)
T 3fe2_A 171 KTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI----RPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGAL 240 (242)
T ss_dssp SCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTS----CSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC-
T ss_pred CCCcccccEEEEeCHHHHhhhCcHHHHHHHHHhC----CccceEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 8889999999999999999999999999999988 678899999999999999999999999999988754
No 10
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=2.8e-41 Score=341.87 Aligned_cols=285 Identities=26% Similarity=0.389 Sum_probs=246.0
Q ss_pred CCCccCCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHHhhHhCC--CCeeEEccCCCCccchhhhhHHHHHhhhhcccCC
Q 013173 139 NVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGG--RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRP 216 (448)
Q Consensus 139 ~~~~~~~~f~~l~L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g--~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~ 216 (448)
....++.+|++++|++.+++++.++||.+|+|+|.++|+.++.+ +|+++++|||+|||++|++|+++.+...
T Consensus 19 ~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~------ 92 (412)
T 3fht_A 19 SPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA------ 92 (412)
T ss_dssp STTCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT------
T ss_pred CCccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhc------
Confidence 33456788999999999999999999999999999999999987 9999999999999999999999877432
Q ss_pred CCCCCCCceEEEEcCcHHHHHHHHHHHHHhccc-CCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhc-cccc
Q 013173 217 RGSRTVYPLALILAPTRELSSQIHVEAKKFSYQ-TGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLER-ARVS 294 (448)
Q Consensus 217 ~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~-~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~-~~~~ 294 (448)
...+++|||+||++|+.|+++.++++... .++.+....++....... ...++|+|+||++|.+++.. ..+.
T Consensus 93 ----~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ivv~T~~~l~~~~~~~~~~~ 165 (412)
T 3fht_A 93 ----NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFID 165 (412)
T ss_dssp ----SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSCSSC
T ss_pred ----CCCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhh---cCCCCEEEECchHHHHHHHhcCCcC
Confidence 23457999999999999999999998754 367788877776543221 33579999999999999966 4567
Q ss_pred CCCeeEEEEcCCccccc-CCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEecccccccCcee
Q 013173 295 LQMIRYLALDEADRMLD-MGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIV 373 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~-~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~ 373 (448)
+.++++|||||||++++ .+|...+..+...+ +...|+++||||++..+..++..++.++..+.+.........+.
T Consensus 166 ~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~----~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (412)
T 3fht_A 166 PKKIKVFVLDEADVMIATQGHQDQSIRIQRML----PRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIK 241 (412)
T ss_dssp GGGCCEEEEETHHHHHSTTTTHHHHHHHHHTS----CTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEE
T ss_pred hhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhC----CCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCce
Confidence 89999999999999987 68888888888887 67789999999999999999999999999998888878888888
Q ss_pred EEEEEecc-cchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCCHHHHHHhh
Q 013173 374 QRVEFVHE-SDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 374 q~~~~~~~-~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
+.+..+.. ..|...+.+++.... ..++||||++++.|+.+++.|...++.+..+||+|++.+|++++
T Consensus 242 ~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~ 309 (412)
T 3fht_A 242 QYYVLCSSRDEKFQALCNLYGAIT-------IAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVI 309 (412)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHHS-------SSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHH
T ss_pred EEEEEcCChHHHHHHHHHHHhhcC-------CCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHH
Confidence 88877755 456677777777653 67899999999999999999999999999999999999999875
No 11
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=3.7e-42 Score=346.33 Aligned_cols=284 Identities=31% Similarity=0.462 Sum_probs=188.9
Q ss_pred ccCCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCC
Q 013173 142 PAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRT 221 (448)
Q Consensus 142 ~~~~~f~~l~L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~ 221 (448)
.+..+|++++|++.+.+.+..+||.+|+|+|+++++.++.++|+++++|||+|||++|++|+++.+... .
T Consensus 18 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~----------~ 87 (394)
T 1fuu_A 18 KVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS----------V 87 (394)
T ss_dssp CCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTT----------C
T ss_pred cccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhcc----------C
Confidence 445679999999999999999999999999999999999999999999999999999999999877432 2
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEE
Q 013173 222 VYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYL 301 (448)
Q Consensus 222 ~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~l 301 (448)
..+++||++||++|+.|+++.+.++....++++..++|+.....+...+. .++|+|+||++|.+.+....+.+.++++|
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~v 166 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMF 166 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCCTTCCEE
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcchhhCcEE
Confidence 34679999999999999999999998888899999999998877666555 58999999999999998888888999999
Q ss_pred EEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEecccccccCceeEEEEEecc
Q 013173 302 ALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHE 381 (448)
Q Consensus 302 VlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~ 381 (448)
|+||||++++++|...+..++..+ +...|+++||||++..+..++..++.++..+.+.........+.+.+..+..
T Consensus 167 IiDEah~~~~~~~~~~~~~~~~~~----~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (394)
T 1fuu_A 167 ILDEADEMLSSGFKEQIYQIFTLL----PPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEE 242 (394)
T ss_dssp EEETHHHHHHTTCHHHHHHHHHHS----CTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC-----------------
T ss_pred EEEChHHhhCCCcHHHHHHHHHhC----CCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCc
Confidence 999999999999999999999988 6678999999999999999999999999988887666666677776666654
Q ss_pred cc-hHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCCHHHHHHhh
Q 013173 382 SD-KRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 382 ~~-k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
.+ |...+.+++.... ..++||||++++.|+.+++.|...++.+..+||++++.+|++++
T Consensus 243 ~~~~~~~l~~~~~~~~-------~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~ 302 (394)
T 1fuu_A 243 EEYKYECLTDLYDSIS-------VTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIM 302 (394)
T ss_dssp -------------------------------------------------------------------
T ss_pred hhhHHHHHHHHHhcCC-------CCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHH
Confidence 43 6666666666542 56899999999999999999999999999999999999998765
No 12
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=3.6e-41 Score=357.31 Aligned_cols=288 Identities=28% Similarity=0.435 Sum_probs=234.9
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHhHHhhHh--CCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEE
Q 013173 152 LGEALNLNIRRCKYVKPTPVQRHAIPISI--GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALIL 229 (448)
Q Consensus 152 L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~--~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil 229 (448)
|++.+++++..+||.+|+|+|.++|+.++ .++|++++||||+|||++|++|+++.+...... ....+++|||
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~------~~~~~~~lvl 101 (579)
T 3sqw_A 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD------SQYMVKAVIV 101 (579)
T ss_dssp SCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS------STTSCCEEEE
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhcccc------ccCCCeEEEE
Confidence 99999999999999999999999999999 789999999999999999999999988765421 2335689999
Q ss_pred cCcHHHHHHHHHHHHHhcc----cCCcEEEEEECCCChHHHHHHHhc-CccEEEeChHHHHHHHhcc-cccCCCeeEEEE
Q 013173 230 APTRELSSQIHVEAKKFSY----QTGVKVVVAYGGAPINQQLRELER-GVDILVATPGRLVDLLERA-RVSLQMIRYLAL 303 (448)
Q Consensus 230 ~PtreL~~qi~~~~~~~~~----~~~~~~~~~~gg~~~~~~~~~l~~-~~~Ilv~Tp~~l~~~l~~~-~~~l~~v~~lVl 303 (448)
+||++|+.|+++.++++.. ...+.+..++|+.....+...+.. +++|+|+||++|++++... ...+..+++|||
T Consensus 102 ~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lVi 181 (579)
T 3sqw_A 102 APTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVL 181 (579)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred cchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEE
Confidence 9999999999999999852 345678888999998888777754 7999999999999999765 456899999999
Q ss_pred cCCcccccCCCHHHHHHHHHHcC---CCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEeccc----ccccCceeEEE
Q 013173 304 DEADRMLDMGFEPQIRKIVQQMD---MPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRV----GSSTDLIVQRV 376 (448)
Q Consensus 304 DEah~ll~~gf~~~i~~i~~~l~---~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~----~~~~~~i~q~~ 376 (448)
||||+|++++|.+.+..|+..+. ...+..+|+++||||+++.+..++..++.++..+.+... ......+.+.+
T Consensus 182 DEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~ 261 (579)
T 3sqw_A 182 DEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSV 261 (579)
T ss_dssp ETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEE
T ss_pred EChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEE
Confidence 99999999999999999887762 222346899999999999999999999998877665432 23345666766
Q ss_pred EEeccc-chHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHC---CCCeEEecCCCCHHHHHHhh
Q 013173 377 EFVHES-DKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN---GFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 377 ~~~~~~-~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~---g~~~~~iHg~~~q~eR~~~l 447 (448)
...... .+...+++.+....... ....++||||+|+..|+.+++.|... ++.+..+||+|++.+|++++
T Consensus 262 ~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~ 334 (579)
T 3sqw_A 262 VISEKFANSIFAAVEHIKKQIKER--DSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLV 334 (579)
T ss_dssp EEESSTTHHHHHHHHHHHHHHHHT--TTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHH
T ss_pred EEecchhhhHHHHHHHHHHHHhhc--CCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHH
Confidence 666543 33333333333322211 12678999999999999999999887 99999999999999999875
No 13
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=9.7e-41 Score=335.57 Aligned_cols=280 Identities=30% Similarity=0.427 Sum_probs=241.8
Q ss_pred cCCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHHhhHhCC--CCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCC
Q 013173 143 AVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGG--RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSR 220 (448)
Q Consensus 143 ~~~~f~~l~L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g--~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~ 220 (448)
...+|++++|++.+.+++.+++|.+|+|+|.++++.++.+ +|+++++|||+|||++|++|++..+...
T Consensus 3 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~---------- 72 (395)
T 3pey_A 3 MAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPE---------- 72 (395)
T ss_dssp -CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT----------
T ss_pred cccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccC----------
Confidence 3578999999999999999999999999999999999988 9999999999999999999999877432
Q ss_pred CCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeE
Q 013173 221 TVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRY 300 (448)
Q Consensus 221 ~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~ 300 (448)
..++++||++||++|+.|+++.++++....++.+...+++..... ....++|+|+||++|.+++......+.++++
T Consensus 73 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~ 148 (395)
T 3pey_A 73 DASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKN----KQINAQVIVGTPGTVLDLMRRKLMQLQKIKI 148 (395)
T ss_dssp CCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTT----SCBCCSEEEECHHHHHHHHHTTCBCCTTCCE
T ss_pred CCCccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhh----ccCCCCEEEEcHHHHHHHHHcCCcccccCCE
Confidence 234579999999999999999999998888888888887754322 1235899999999999999888888999999
Q ss_pred EEEcCCccccc-CCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEecccccccCceeEEEEEe
Q 013173 301 LALDEADRMLD-MGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFV 379 (448)
Q Consensus 301 lVlDEah~ll~-~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~ 379 (448)
|||||||++++ .+|...+..+...+ +...|+++||||+++.+..++..++.++..+.+.........+.+.+..+
T Consensus 149 iIiDEah~~~~~~~~~~~~~~~~~~~----~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (395)
T 3pey_A 149 FVLDEADNMLDQQGLGDQCIRVKRFL----PKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDC 224 (395)
T ss_dssp EEEETHHHHHHSTTHHHHHHHHHHTS----CTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEEC
T ss_pred EEEEChhhhcCccccHHHHHHHHHhC----CCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEc
Confidence 99999999988 68888888888887 66789999999999999999999999998888877777778888877766
Q ss_pred cc-cchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCCHHHHHHhh
Q 013173 380 HE-SDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 380 ~~-~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
.. ..|...+.+++.... ..++||||++++.|+.+++.|...++.+..+||++++.+|++++
T Consensus 225 ~~~~~~~~~l~~~~~~~~-------~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~ 286 (395)
T 3pey_A 225 KNEADKFDVLTELYGLMT-------IGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLI 286 (395)
T ss_dssp SSHHHHHHHHHHHHTTTT-------SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHH
T ss_pred CchHHHHHHHHHHHHhcc-------CCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHH
Confidence 44 345555555554432 67899999999999999999999999999999999999999875
No 14
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=3e-40 Score=328.69 Aligned_cols=276 Identities=36% Similarity=0.561 Sum_probs=244.4
Q ss_pred CCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHHhhHhCC-CCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCC
Q 013173 144 VNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGG-RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTV 222 (448)
Q Consensus 144 ~~~f~~l~L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g-~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~ 222 (448)
..+|++++|++.+.+++.++||.+|+|+|+++++.++.+ +++++++|||+|||++|++|++..+... .
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~-----------~ 73 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN-----------N 73 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS-----------S
T ss_pred cCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhccc-----------C
Confidence 357999999999999999999999999999999999987 7999999999999999999998766431 2
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEE
Q 013173 223 YPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLA 302 (448)
Q Consensus 223 ~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lV 302 (448)
++++||++||++|+.|+++.++++....++++..++|+.....+...+. .++|+|+||++|.+++....+.+.++++||
T Consensus 74 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iI 152 (367)
T 1hv8_A 74 GIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFI 152 (367)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCCEEE
T ss_pred CCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcccccCCEEE
Confidence 4569999999999999999999998878889999999998877766665 589999999999999988888899999999
Q ss_pred EcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEecccccccCceeEEEEEeccc
Q 013173 303 LDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHES 382 (448)
Q Consensus 303 lDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~ 382 (448)
+||||++.+++|...+..++..+ +...|+++||||++.++..++..++.++.++... ....+.+.+..+...
T Consensus 153 iDEah~~~~~~~~~~~~~~~~~~----~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 224 (367)
T 1hv8_A 153 LDEADEMLNMGFIKDVEKILNAC----NKDKRILLFSATMPREILNLAKKYMGDYSFIKAK----INANIEQSYVEVNEN 224 (367)
T ss_dssp EETHHHHHTTTTHHHHHHHHHTS----CSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECC----SSSSSEEEEEECCGG
T ss_pred EeCchHhhhhchHHHHHHHHHhC----CCCceEEEEeeccCHHHHHHHHHHcCCCeEEEec----CCCCceEEEEEeChH
Confidence 99999999999999999999887 6678999999999999999999998887776543 234667777778888
Q ss_pred chHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCCHHHHHHhh
Q 013173 383 DKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 383 ~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
+|...+.+++.. ...++||||++++.|+.+++.|...++.+..+||++++.+|++++
T Consensus 225 ~~~~~l~~~l~~--------~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~ 281 (367)
T 1hv8_A 225 ERFEALCRLLKN--------KEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVI 281 (367)
T ss_dssp GHHHHHHHHHCS--------TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHH
T ss_pred HHHHHHHHHHhc--------CCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHH
Confidence 888888887762 267899999999999999999999999999999999999999875
No 15
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=6.8e-42 Score=354.64 Aligned_cols=282 Identities=26% Similarity=0.397 Sum_probs=177.2
Q ss_pred ccCCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHHhhHhCC--CCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCC
Q 013173 142 PAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGG--RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGS 219 (448)
Q Consensus 142 ~~~~~f~~l~L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g--~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~ 219 (448)
.++.+|.+++|++.+++++..+||.+|+|+|.++|+.++.+ +|++++|+||||||++|++|+++.+...
T Consensus 89 ~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~--------- 159 (479)
T 3fmp_B 89 YSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA--------- 159 (479)
T ss_dssp CCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTT---------
T ss_pred cCcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhc---------
Confidence 34678999999999999999999999999999999999987 9999999999999999999999877432
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHHHHhccc-CCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhc-ccccCCC
Q 013173 220 RTVYPLALILAPTRELSSQIHVEAKKFSYQ-TGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLER-ARVSLQM 297 (448)
Q Consensus 220 ~~~~~~~lil~PtreL~~qi~~~~~~~~~~-~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~-~~~~l~~ 297 (448)
...+++|||+||++|+.|+++.++++... .++.+....++....... ...++|+|+||++|++++.+ ..+.+.+
T Consensus 160 -~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 235 (479)
T 3fmp_B 160 -NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKK 235 (479)
T ss_dssp -SCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSCCCCGGG
T ss_pred -CCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccccc---cCCCCEEEECchHHHHHHHhcCCcCccc
Confidence 23467999999999999999999998754 367777777776543221 23579999999999999966 4567899
Q ss_pred eeEEEEcCCccccc-CCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEecccccccCceeEEE
Q 013173 298 IRYLALDEADRMLD-MGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRV 376 (448)
Q Consensus 298 v~~lVlDEah~ll~-~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~ 376 (448)
+++|||||||++++ ++|...+..++..+ +..+|+++||||++.++..++..++.++..+.+.........+.|.+
T Consensus 236 ~~~iViDEah~~~~~~~~~~~~~~i~~~~----~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 311 (479)
T 3fmp_B 236 IKVFVLDEADVMIATQGHQDQSIRIQRML----PRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYY 311 (479)
T ss_dssp CCEEEECCHHHHHTSTTHHHHHHHHHTTS----CTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC-------------
T ss_pred CCEEEEECHHHHhhcCCcHHHHHHHHhhC----CccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEE
Confidence 99999999999997 68888888888777 67799999999999999999999999999998888777788888877
Q ss_pred EEecc-cchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCCHHHHHHhh
Q 013173 377 EFVHE-SDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 377 ~~~~~-~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
..+.. ..|...|..++.... ..++||||++++.|+.+++.|...++.+..+||++++.+|.+++
T Consensus 312 ~~~~~~~~~~~~l~~~~~~~~-------~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~ 376 (479)
T 3fmp_B 312 VLCSSRDEKFQALCNLYGAIT-------IAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVI 376 (479)
T ss_dssp ------------------------------------------------------------------------
T ss_pred EEeCCHHHHHHHHHHHHhhcc-------CCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHH
Confidence 77654 456666666666543 56799999999999999999999999999999999999998775
No 16
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=3.6e-40 Score=308.33 Aligned_cols=218 Identities=39% Similarity=0.621 Sum_probs=189.1
Q ss_pred CCCCCCccCCCccc-CCCCHHHHHHHHHCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhccc
Q 013173 136 SGENVPPAVNTFAE-IDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQ 214 (448)
Q Consensus 136 ~~~~~~~~~~~f~~-l~L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~ 214 (448)
+....|+++.+|++ +++++.+++++.++||.+|+|+|+++|+.+++++|+++++|||||||++|++|++..+......
T Consensus 10 ~~~~~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~- 88 (228)
T 3iuy_A 10 EKRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPIS- 88 (228)
T ss_dssp SCCCCCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC------
T ss_pred ccCcCCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccch-
Confidence 45567889999999 7999999999999999999999999999999999999999999999999999999887643221
Q ss_pred CCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhccccc
Q 013173 215 RPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVS 294 (448)
Q Consensus 215 ~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~ 294 (448)
.....++++||++||++|+.|+++.++++. ..++++..++|+.....+...+.++++|+|+||++|.+++....+.
T Consensus 89 ---~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~ 164 (228)
T 3iuy_A 89 ---REQRNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVN 164 (228)
T ss_dssp -------CCCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCC
T ss_pred ---hhccCCCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcC
Confidence 112345779999999999999999999986 4578899999999888888888889999999999999999888888
Q ss_pred CCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEe
Q 013173 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAV 362 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v 362 (448)
+.++++|||||||++++++|...+..++..+ +..+|+++||||+++++.+++..++.+|+.+.|
T Consensus 165 ~~~~~~lViDEah~~~~~~~~~~~~~i~~~~----~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~v 228 (228)
T 3iuy_A 165 LRSITYLVIDEADKMLDMEFEPQIRKILLDV----RPDRQTVMTSATWPDTVRQLALSYLKDPMIVYV 228 (228)
T ss_dssp CTTCCEEEECCHHHHHHTTCHHHHHHHHHHS----CSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEC
T ss_pred cccceEEEEECHHHHhccchHHHHHHHHHhC----CcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEeC
Confidence 9999999999999999999999999999998 667899999999999999999999999988864
No 17
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=1.6e-39 Score=316.64 Aligned_cols=206 Identities=28% Similarity=0.457 Sum_probs=182.7
Q ss_pred ccCCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHHhhHhCC--CCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCC
Q 013173 142 PAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGG--RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGS 219 (448)
Q Consensus 142 ~~~~~f~~l~L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g--~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~ 219 (448)
.++.+|++++|++.+++++..+||.+||++|.++||.++.+ +|++++||||||||++|++|+++.+...
T Consensus 89 ~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~--------- 159 (300)
T 3fmo_B 89 YSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA--------- 159 (300)
T ss_dssp CCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTT---------
T ss_pred CCcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhcc---------
Confidence 35789999999999999999999999999999999999987 9999999999999999999999887532
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHHHHhccc-CCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhc-ccccCCC
Q 013173 220 RTVYPLALILAPTRELSSQIHVEAKKFSYQ-TGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLER-ARVSLQM 297 (448)
Q Consensus 220 ~~~~~~~lil~PtreL~~qi~~~~~~~~~~-~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~-~~~~l~~ 297 (448)
..+|++|||+|||+||.|+++.++++... .++.+..++++....... ..+++|+|+||++|++++.+ ..+++++
T Consensus 160 -~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l~~~~~~~l~~ 235 (300)
T 3fmo_B 160 -NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKK 235 (300)
T ss_dssp -SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTTCCCCGGG
T ss_pred -CCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh---cCCCCEEEECHHHHHHHHHhcCCCChhh
Confidence 34578999999999999999999999865 368888888887653322 44689999999999999976 5567899
Q ss_pred eeEEEEcCCccccc-CCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEecc
Q 013173 298 IRYLALDEADRMLD-MGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGR 364 (448)
Q Consensus 298 v~~lVlDEah~ll~-~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~ 364 (448)
+++|||||||+|++ ++|...+..|+..+ +..+|+++||||++.++..++..++.+|+.+.+.+
T Consensus 236 l~~lVlDEad~l~~~~~~~~~~~~i~~~~----~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~~ 299 (300)
T 3fmo_B 236 IKVFVLDEADVMIATQGHQDQSIRIQRML----PRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKR 299 (300)
T ss_dssp CSEEEETTHHHHHHSTTHHHHHHHHHTTS----CTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEECC
T ss_pred ceEEEEeCHHHHhhccCcHHHHHHHHHhC----CCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEecC
Confidence 99999999999998 78999999998888 67899999999999999999999999999988753
No 18
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=3.9e-39 Score=303.40 Aligned_cols=212 Identities=35% Similarity=0.527 Sum_probs=179.5
Q ss_pred CCCCccCCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCC
Q 013173 138 ENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPR 217 (448)
Q Consensus 138 ~~~~~~~~~f~~l~L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~ 217 (448)
.+.++++.+|++++|++.+++++..+||.+|+++|.++|+.++.++|+++++|||||||++|++|+++.+...
T Consensus 23 ~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~------- 95 (237)
T 3bor_A 23 SNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE------- 95 (237)
T ss_dssp ----CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTT-------
T ss_pred CCCCCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc-------
Confidence 3455677889999999999999999999999999999999999999999999999999999999999877432
Q ss_pred CCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHHhcC-ccEEEeChHHHHHHHhcccccCC
Q 013173 218 GSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERG-VDILVATPGRLVDLLERARVSLQ 296 (448)
Q Consensus 218 ~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~-~~Ilv~Tp~~l~~~l~~~~~~l~ 296 (448)
...+++||++||++|+.|+++.+++++...++.+..++|+.....+...+..+ ++|+|+||++|.+++....+.+.
T Consensus 96 ---~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~ 172 (237)
T 3bor_A 96 ---FKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPK 172 (237)
T ss_dssp ---SCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCST
T ss_pred ---CCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcc
Confidence 23457999999999999999999999888888999999998887777777666 89999999999999988888899
Q ss_pred CeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEec
Q 013173 297 MIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVG 363 (448)
Q Consensus 297 ~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~ 363 (448)
++++|||||||++++++|...+..++..+ +..+|+++||||+++++.++++.++.+|+.+.+.
T Consensus 173 ~~~~lViDEah~~~~~~~~~~l~~i~~~~----~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v~ 235 (237)
T 3bor_A 173 WIKMFVLDEADEMLSRGFKDQIYEIFQKL----NTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVK 235 (237)
T ss_dssp TCCEEEEESHHHHHHTTCHHHHHHHHHHS----CTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC--
T ss_pred cCcEEEECCchHhhccCcHHHHHHHHHhC----CCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEec
Confidence 99999999999999999999999999998 6678999999999999999999999999988764
No 19
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=7.8e-39 Score=303.67 Aligned_cols=208 Identities=38% Similarity=0.623 Sum_probs=191.1
Q ss_pred ccCCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCC
Q 013173 142 PAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRT 221 (448)
Q Consensus 142 ~~~~~f~~l~L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~ 221 (448)
.+..+|++++|++.+.+++..+||.+|+++|.++|+.++.++|++++++||||||++|++|+++.+....
T Consensus 40 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~---------- 109 (249)
T 3ber_A 40 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP---------- 109 (249)
T ss_dssp HHHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSC----------
T ss_pred cccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCC----------
Confidence 4567899999999999999999999999999999999999999999999999999999999999886542
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhc-ccccCCCeeE
Q 013173 222 VYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLER-ARVSLQMIRY 300 (448)
Q Consensus 222 ~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~-~~~~l~~v~~ 300 (448)
..+++||++||++|+.|+++.++++....++++..++|+.....+...+..+++|+|+||++|.+++.. ..+.+.++++
T Consensus 110 ~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~ 189 (249)
T 3ber_A 110 QRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKY 189 (249)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCE
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCE
Confidence 245799999999999999999999988888999999999998888888888999999999999999986 4567899999
Q ss_pred EEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEec
Q 013173 301 LALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVG 363 (448)
Q Consensus 301 lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~ 363 (448)
|||||||++++++|...+..++..+ +..+|+++||||++.+++++++.++.+|+.+.++
T Consensus 190 lViDEah~l~~~~~~~~l~~i~~~~----~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v~ 248 (249)
T 3ber_A 190 LVMDEADRILNMDFETEVDKILKVI----PRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVS 248 (249)
T ss_dssp EEECSHHHHHHTTCHHHHHHHHHSS----CSSSEEEEEESSCCHHHHHHHHHHCSSCEEEECC
T ss_pred EEEcChhhhhccChHHHHHHHHHhC----CCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEec
Confidence 9999999999999999999999988 6678999999999999999999999999988763
No 20
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=1.6e-38 Score=297.81 Aligned_cols=212 Identities=31% Similarity=0.535 Sum_probs=184.8
Q ss_pred CCCCCCccCCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccC
Q 013173 136 SGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQR 215 (448)
Q Consensus 136 ~~~~~~~~~~~f~~l~L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~ 215 (448)
++...+.+..+|++++|++.+.+++.++||.+|+++|.++|+.++.++|++++++||+|||++|++|+++.+...
T Consensus 15 ~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~----- 89 (230)
T 2oxc_A 15 TGDVLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLE----- 89 (230)
T ss_dssp ---------CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT-----
T ss_pred cCCCCCCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc-----
Confidence 455666777899999999999999999999999999999999999999999999999999999999999887542
Q ss_pred CCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccC-CcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhccccc
Q 013173 216 PRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQT-GVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVS 294 (448)
Q Consensus 216 ~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~ 294 (448)
..++++||++||++|+.|+++.++++.... ++++..++|+.....+...+. +++|+|+||++|.+++....+.
T Consensus 90 -----~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~Iiv~Tp~~l~~~~~~~~~~ 163 (230)
T 2oxc_A 90 -----NLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLK-KCHIAVGSPGRIKQLIELDYLN 163 (230)
T ss_dssp -----SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTT-SCSEEEECHHHHHHHHHTTSSC
T ss_pred -----CCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhcc-CCCEEEECHHHHHHHHhcCCcc
Confidence 224679999999999999999999987554 789999999998877766554 6899999999999999888888
Q ss_pred CCCeeEEEEcCCcccccCC-CHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEe
Q 013173 295 LQMIRYLALDEADRMLDMG-FEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAV 362 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~g-f~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v 362 (448)
+.++++|||||||++++++ |...+..|+..+ +..+|+++||||+++++.+++..++.+|+++.+
T Consensus 164 ~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~----~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~ 228 (230)
T 2oxc_A 164 PGSIRLFILDEADKLLEEGSFQEQINWIYSSL----PASKQMLAVSATYPEFLANALTKYMRDPTFVRL 228 (230)
T ss_dssp GGGCCEEEESSHHHHHSTTSSHHHHHHHHHHS----CSSCEEEEEESCCCHHHHHHHTTTCSSCEEECC
T ss_pred cccCCEEEeCCchHhhcCcchHHHHHHHHHhC----CCCCeEEEEEeccCHHHHHHHHHHcCCCeEEEc
Confidence 8999999999999999998 999999999998 667899999999999999999999999988765
No 21
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=5.9e-38 Score=288.29 Aligned_cols=202 Identities=31% Similarity=0.586 Sum_probs=185.9
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCc
Q 013173 145 NTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYP 224 (448)
Q Consensus 145 ~~f~~l~L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~ 224 (448)
.+|++++|++.+++++.++||.+|+|+|.++++.+++++|+++++|||+|||++|++|+++.+... ...+
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~----------~~~~ 72 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLK----------KDNI 72 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTT----------SCSC
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhccc----------CCCe
Confidence 469999999999999999999999999999999999999999999999999999999999876432 2346
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhcccC-CcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEE
Q 013173 225 LALILAPTRELSSQIHVEAKKFSYQT-GVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLAL 303 (448)
Q Consensus 225 ~~lil~PtreL~~qi~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVl 303 (448)
++||++||++|+.|+++.++++.... ++++..++|+.....+...+..+++|+|+||++|.+++......+.++++|||
T Consensus 73 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lVi 152 (206)
T 1vec_A 73 QAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVL 152 (206)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEE
T ss_pred eEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEE
Confidence 79999999999999999999998665 78899999999988888888888999999999999999988888999999999
Q ss_pred cCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEE
Q 013173 304 DEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFL 360 (448)
Q Consensus 304 DEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i 360 (448)
||||++++.+|...+..++..+ +...|+++||||+++++.++++.++.+|+.+
T Consensus 153 DEah~~~~~~~~~~l~~i~~~~----~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 153 DEADKLLSQDFVQIMEDIILTL----PKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp ETHHHHTSTTTHHHHHHHHHHS----CTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred EChHHhHhhCcHHHHHHHHHhC----CccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 9999999999999999999998 6678999999999999999999999998765
No 22
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=2.1e-37 Score=304.81 Aligned_cols=259 Identities=32% Similarity=0.508 Sum_probs=223.2
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcC
Q 013173 152 LGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAP 231 (448)
Q Consensus 152 L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~P 231 (448)
|++.|.+++.++||.+|+|+|+++++.+++++++++++|||+|||++|++|++.. +.++||++|
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~----------------~~~~liv~P 64 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL----------------GMKSLVVTP 64 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH----------------TCCEEEECS
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh----------------cCCEEEEeC
Confidence 5789999999999999999999999999999999999999999999999998862 235999999
Q ss_pred cHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCccccc
Q 013173 232 TRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLD 311 (448)
Q Consensus 232 treL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~ 311 (448)
|++|+.|+++.++++....++++..++|+.....+...+.. ++|+|+||++|.+++....+.+.++++||+||||++.+
T Consensus 65 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~ 143 (337)
T 2z0m_A 65 TRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVRN-ADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFE 143 (337)
T ss_dssp SHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHTT-CSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcCC-CCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhc
Confidence 99999999999999988888999999999988777766654 89999999999999988777889999999999999999
Q ss_pred CCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEecccccccCceeEEEEEecccchHHHHHHH
Q 013173 312 MGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDL 391 (448)
Q Consensus 312 ~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~l 391 (448)
++|...+..++..+ +...++++||||++..+...+..++.++..+... ....++.+.+..+....+. ..+.
T Consensus 144 ~~~~~~~~~~~~~~----~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~ 214 (337)
T 2z0m_A 144 MGFIDDIKIILAQT----SNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC---IGLANVEHKFVHVKDDWRS--KVQA 214 (337)
T ss_dssp TTCHHHHHHHHHHC----TTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS---GGGGGEEEEEEECSSSSHH--HHHH
T ss_pred cccHHHHHHHHhhC----CcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc---cccCCceEEEEEeChHHHH--HHHH
Confidence 99999999999888 6678899999999999999999999888776432 3445666666666554432 2233
Q ss_pred HHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCCHHHHHHhh
Q 013173 392 LHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 392 l~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
+... ...++||||++++.|+.+++.|. .+..+||++++.+|.+++
T Consensus 215 ~~~~-------~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~ 259 (337)
T 2z0m_A 215 LREN-------KDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNI 259 (337)
T ss_dssp HHTC-------CCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHH
T ss_pred HHhC-------CCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHH
Confidence 3332 26789999999999999999886 689999999999999875
No 23
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=6.8e-38 Score=294.40 Aligned_cols=211 Identities=32% Similarity=0.527 Sum_probs=187.8
Q ss_pred ccCCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCC
Q 013173 142 PAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRT 221 (448)
Q Consensus 142 ~~~~~f~~l~L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~ 221 (448)
.++.+|++++|++.+.+++.+++|.+|+++|.++++.++.++|+++++|||||||++|++|+++.+..... ...
T Consensus 22 ~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~------~~~ 95 (236)
T 2pl3_A 22 NEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQW------TST 95 (236)
T ss_dssp GGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTC------CGG
T ss_pred cccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcc------ccc
Confidence 45678999999999999999999999999999999999999999999999999999999999998875421 113
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcc-cccCCCeeE
Q 013173 222 VYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERA-RVSLQMIRY 300 (448)
Q Consensus 222 ~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~-~~~l~~v~~ 300 (448)
.++++||++||++|+.|+++.++++....++++..++|+.....+...+ .+++|+|+||++|.+++... .+.+.++++
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~ 174 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQM 174 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCE
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccE
Confidence 3567999999999999999999999888889999999998877766665 46899999999999998765 467899999
Q ss_pred EEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEec
Q 013173 301 LALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVG 363 (448)
Q Consensus 301 lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~ 363 (448)
|||||||++++++|...+..++..+ +..+|+++||||+++++.++++.++.+|..+.+.
T Consensus 175 lViDEah~~~~~~~~~~~~~i~~~~----~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~ 233 (236)
T 2pl3_A 175 LVLDEADRILDMGFADTMNAVIENL----PKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVH 233 (236)
T ss_dssp EEETTHHHHHHTTTHHHHHHHHHTS----CTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECC
T ss_pred EEEeChHHHhcCCcHHHHHHHHHhC----CCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeC
Confidence 9999999999999999999999998 6678999999999999999999999999988764
No 24
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=8.9e-39 Score=297.09 Aligned_cols=206 Identities=32% Similarity=0.504 Sum_probs=185.6
Q ss_pred CCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCC
Q 013173 144 VNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVY 223 (448)
Q Consensus 144 ~~~f~~l~L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~ 223 (448)
..+|++++|++.+.+++.++||.+|+++|.++++.+++++|+++++|||||||++|++|+++.+... ..+
T Consensus 3 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~----------~~~ 72 (219)
T 1q0u_A 3 ETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPE----------RAE 72 (219)
T ss_dssp -CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTT----------SCS
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhC----------cCC
Confidence 4679999999999999999999999999999999999999999999999999999999999887532 234
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcccC----CcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCee
Q 013173 224 PLALILAPTRELSSQIHVEAKKFSYQT----GVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIR 299 (448)
Q Consensus 224 ~~~lil~PtreL~~qi~~~~~~~~~~~----~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~ 299 (448)
+++||++||++|+.|+++.++++.... ++++..++|+.....+...+..+++|+|+||++|.+++....+.+.+++
T Consensus 73 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~ 152 (219)
T 1q0u_A 73 VQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAH 152 (219)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCC
T ss_pred ceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcce
Confidence 679999999999999999999987655 6888888999876666555566789999999999999988888889999
Q ss_pred EEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEec
Q 013173 300 YLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVG 363 (448)
Q Consensus 300 ~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~ 363 (448)
+|||||||++++++|...+..++..+ +...|+++||||++.++.++++.++.+|..+.+.
T Consensus 153 ~lViDEah~~~~~~~~~~l~~i~~~~----~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~ 212 (219)
T 1q0u_A 153 ILVVDEADLMLDMGFITDVDQIAARM----PKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVL 212 (219)
T ss_dssp EEEECSHHHHHHTTCHHHHHHHHHTS----CTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC
T ss_pred EEEEcCchHHhhhChHHHHHHHHHhC----CcccEEEEEecCCCHHHHHHHHHHcCCCeEEEee
Confidence 99999999999999999999999988 6678999999999999999999999999888664
No 25
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=6e-38 Score=292.15 Aligned_cols=212 Identities=33% Similarity=0.537 Sum_probs=182.1
Q ss_pred CCCccCCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCC
Q 013173 139 NVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRG 218 (448)
Q Consensus 139 ~~~~~~~~f~~l~L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~ 218 (448)
..++++.+|++++|++.+++.+.++||.+|+|+|.++++.+++++|+++++|||+|||++|++|+++.+...
T Consensus 8 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~-------- 79 (224)
T 1qde_A 8 NYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS-------- 79 (224)
T ss_dssp SCCCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT--------
T ss_pred ccCcccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhcc--------
Confidence 345667889999999999999999999999999999999999999999999999999999999999887432
Q ss_pred CCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCe
Q 013173 219 SRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMI 298 (448)
Q Consensus 219 ~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v 298 (448)
..++++||++||++|+.|+++.++++....++++..++|+.....+...+.. ++|+|+||++|.+++......+.++
T Consensus 80 --~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~~~~~~~~ 156 (224)
T 1qde_A 80 --VKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRRRFRTDKI 156 (224)
T ss_dssp --CCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTT-CSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred --CCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHhCCcchhhC
Confidence 2346799999999999999999999988888999999999887766666554 8999999999999999888889999
Q ss_pred eEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEeccc
Q 013173 299 RYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRV 365 (448)
Q Consensus 299 ~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~ 365 (448)
++|||||||++++++|...+..++..+ +...|+++||||+++++.++++.++.+++.+.+...
T Consensus 157 ~~iViDEah~~~~~~~~~~l~~i~~~~----~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~~ 219 (224)
T 1qde_A 157 KMFILDEADEMLSSGFKEQIYQIFTLL----PPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKD 219 (224)
T ss_dssp CEEEEETHHHHHHTTCHHHHHHHHHHS----CTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC----
T ss_pred cEEEEcChhHHhhhhhHHHHHHHHHhC----CccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 999999999999999999999999988 667899999999999999999999999998877543
No 26
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=7.5e-38 Score=299.15 Aligned_cols=203 Identities=35% Similarity=0.530 Sum_probs=181.0
Q ss_pred CCcccCC--CCHHHHHHHHHCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCC
Q 013173 145 NTFAEID--LGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTV 222 (448)
Q Consensus 145 ~~f~~l~--L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~ 222 (448)
.+|++++ |++.+++++..+||.+|+|+|.++|+.++.++|+++++|||||||++|++|+++.+...... ...
T Consensus 52 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~------~~~ 125 (262)
T 3ly5_A 52 TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFM------PRN 125 (262)
T ss_dssp GCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCC------GGG
T ss_pred CChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhcccc------ccC
Confidence 4577776 99999999999999999999999999999999999999999999999999999988764311 123
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhccc-ccCCCeeEE
Q 013173 223 YPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERAR-VSLQMIRYL 301 (448)
Q Consensus 223 ~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~-~~l~~v~~l 301 (448)
++++|||+||++||.|+++.++++....++.+..++|+.....+...+..+++|+|+||++|.+++.... +.+.++++|
T Consensus 126 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~l 205 (262)
T 3ly5_A 126 GTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCL 205 (262)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEE
Confidence 5679999999999999999999999888899999999999988888888889999999999999987754 678999999
Q ss_pred EEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCc
Q 013173 302 ALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANY 357 (448)
Q Consensus 302 VlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~ 357 (448)
||||||+|++++|.+.+..|+..+ +..+|+++||||++++++.+++.++.++
T Consensus 206 ViDEah~l~~~~~~~~l~~i~~~~----~~~~q~l~~SAT~~~~v~~~~~~~l~~~ 257 (262)
T 3ly5_A 206 VIDEADRILDVGFEEELKQIIKLL----PTRRQTMLFSATQTRKVEDLARISLKKE 257 (262)
T ss_dssp EECSHHHHHHTTCHHHHHHHHHHS----CSSSEEEEECSSCCHHHHHHHHHHCSSC
T ss_pred EEcChHHHhhhhHHHHHHHHHHhC----CCCCeEEEEEecCCHHHHHHHHHHcCCC
Confidence 999999999999999999999998 6778999999999999999999988753
No 27
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.6e-38 Score=300.33 Aligned_cols=222 Identities=34% Similarity=0.547 Sum_probs=189.1
Q ss_pred ccccCCCCCCccCCCcccC----CCCHHHHHHHHHCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHH
Q 013173 132 PVETSGENVPPAVNTFAEI----DLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGI 207 (448)
Q Consensus 132 ~v~~~~~~~~~~~~~f~~l----~L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l 207 (448)
.+.+.+...|.++.+|+++ +|++.+++++.++||.+|+|+|+++|+.++.++|+++++|||||||++|++|+++.+
T Consensus 12 ~i~~~~~~~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l 91 (245)
T 3dkp_A 12 KIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQL 91 (245)
T ss_dssp TEEEESSSCCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ceEecCCCCCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHH
Confidence 3445677788999999988 899999999999999999999999999999999999999999999999999999887
Q ss_pred hhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHH-HHHhcCccEEEeChHHHHH
Q 013173 208 MREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQL-RELERGVDILVATPGRLVD 286 (448)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~-~~l~~~~~Ilv~Tp~~l~~ 286 (448)
... ...++++|||+||++|+.|+++.++++....++++..++++....... .....+++|+|+||++|.+
T Consensus 92 ~~~---------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~ 162 (245)
T 3dkp_A 92 KQP---------ANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIY 162 (245)
T ss_dssp CSC---------CSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHH
T ss_pred hhc---------ccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHH
Confidence 532 134567999999999999999999999888888888777654322221 1223468999999999999
Q ss_pred HHhcc--cccCCCeeEEEEcCCccccc---CCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEE
Q 013173 287 LLERA--RVSLQMIRYLALDEADRMLD---MGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLA 361 (448)
Q Consensus 287 ~l~~~--~~~l~~v~~lVlDEah~ll~---~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~ 361 (448)
++... .+.+.++++|||||||++++ .+|...+..++..+. +...|+++||||++++++.+++.++.+|+.+.
T Consensus 163 ~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~---~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~ 239 (245)
T 3dkp_A 163 LLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACT---SHKVRRAMFSATFAYDVEQWCKLNLDNVISVS 239 (245)
T ss_dssp HHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCC---CTTCEEEEEESSCCHHHHHHHHHHSSSCEEEE
T ss_pred HHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcC---CCCcEEEEEeccCCHHHHHHHHHhCCCCEEEE
Confidence 99876 46789999999999999998 578899999988763 45689999999999999999999999999998
Q ss_pred eccc
Q 013173 362 VGRV 365 (448)
Q Consensus 362 v~~~ 365 (448)
++..
T Consensus 240 ~~~~ 243 (245)
T 3dkp_A 240 IGAR 243 (245)
T ss_dssp ECC-
T ss_pred eCCC
Confidence 8654
No 28
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=2.3e-37 Score=284.43 Aligned_cols=205 Identities=39% Similarity=0.628 Sum_probs=186.1
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCce
Q 013173 146 TFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPL 225 (448)
Q Consensus 146 ~f~~l~L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~ 225 (448)
+|++++|++.+.+++.+++|.+|+|+|+++++.+++++|+++++|||+|||++|++|+++.+.... ....+++
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~-------~~~~~~~ 74 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQ-------ERGRKPR 74 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCC-------CTTCCCS
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhcc-------ccCCCCc
Confidence 599999999999999999999999999999999999999999999999999999999998875421 1234577
Q ss_pred EEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEcC
Q 013173 226 ALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDE 305 (448)
Q Consensus 226 ~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDE 305 (448)
+||++||++|+.|+++.++++... +++..++|+.....+...+..+++|+|+||++|.+++....+.+.++++|||||
T Consensus 75 ~lil~P~~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE 152 (207)
T 2gxq_A 75 ALVLTPTRELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDE 152 (207)
T ss_dssp EEEECSSHHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEES
T ss_pred EEEEECCHHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEC
Confidence 999999999999999999998754 678888999988888888888899999999999999998888899999999999
Q ss_pred CcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEec
Q 013173 306 ADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVG 363 (448)
Q Consensus 306 ah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~ 363 (448)
||++++++|...+..++..+ +..+|+++||||+++++.++++.++.+|+.+.+.
T Consensus 153 ah~~~~~~~~~~~~~i~~~~----~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~~ 206 (207)
T 2gxq_A 153 ADEMLSMGFEEEVEALLSAT----PPSRQTLLFSATLPSWAKRLAERYMKNPVLINVI 206 (207)
T ss_dssp HHHHHHTTCHHHHHHHHHTS----CTTSEEEEECSSCCHHHHHHHHHHCSSCEEEECC
T ss_pred hhHhhccchHHHHHHHHHhC----CccCeEEEEEEecCHHHHHHHHHHcCCCeEEEcC
Confidence 99999999999999999887 6678999999999999999999999999988653
No 29
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=3.8e-37 Score=286.04 Aligned_cols=209 Identities=32% Similarity=0.504 Sum_probs=182.9
Q ss_pred CCCccCCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCC
Q 013173 139 NVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRG 218 (448)
Q Consensus 139 ~~~~~~~~f~~l~L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~ 218 (448)
..+....+|++++|++.+.+++.++||.+|+|+|.++++.+++++|+++++|||+|||++|++|++..+...
T Consensus 8 ~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~-------- 79 (220)
T 1t6n_A 8 YVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV-------- 79 (220)
T ss_dssp ------CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCC--------
T ss_pred cccccCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhcc--------
Confidence 334455679999999999999999999999999999999999999999999999999999999999876321
Q ss_pred CCCCCceEEEEcCcHHHHHHHHHHHHHhcccC-CcEEEEEECCCChHHHHHHHhcC-ccEEEeChHHHHHHHhcccccCC
Q 013173 219 SRTVYPLALILAPTRELSSQIHVEAKKFSYQT-GVKVVVAYGGAPINQQLRELERG-VDILVATPGRLVDLLERARVSLQ 296 (448)
Q Consensus 219 ~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~-~~Ilv~Tp~~l~~~l~~~~~~l~ 296 (448)
...+++||++||++|+.|+++.++++.... ++++..++|+.....+...+..+ ++|+|+||++|.+++....+.+.
T Consensus 80 --~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~ 157 (220)
T 1t6n_A 80 --TGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLK 157 (220)
T ss_dssp --TTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCT
T ss_pred --CCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcc
Confidence 224579999999999999999999998665 78999999999988777777654 79999999999999988888899
Q ss_pred CeeEEEEcCCccccc-CCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEE
Q 013173 297 MIRYLALDEADRMLD-MGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLA 361 (448)
Q Consensus 297 ~v~~lVlDEah~ll~-~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~ 361 (448)
++++|||||||++++ .+|...+..++..+ +...|+++||||++.+++++++.++.+|+.+.
T Consensus 158 ~~~~lViDEah~~~~~~~~~~~~~~i~~~~----~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 158 HIKHFILDECDKMLEQLDMRRDVQEIFRMT----PHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp TCCEEEEESHHHHHSSHHHHHHHHHHHHTS----CSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred cCCEEEEcCHHHHhcccCcHHHHHHHHHhC----CCcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 999999999999997 47888898888877 66789999999999999999999999998775
No 30
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=2e-36 Score=320.04 Aligned_cols=269 Identities=15% Similarity=0.226 Sum_probs=208.7
Q ss_pred cccCCCCHHHHHHHHH-CCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCce
Q 013173 147 FAEIDLGEALNLNIRR-CKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPL 225 (448)
Q Consensus 147 f~~l~L~~~l~~~l~~-~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~ 225 (448)
+.++++++.+.+.|++ +||.+|+|+|.++|+.++.|+|+++++|||+|||++|++|++.. .++
T Consensus 23 ~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~----------------~g~ 86 (591)
T 2v1x_A 23 KEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS----------------DGF 86 (591)
T ss_dssp CSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS----------------SSE
T ss_pred cccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc----------------CCc
Confidence 4467899999999998 69999999999999999999999999999999999999999841 246
Q ss_pred EEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHH------hcCccEEEeChHHHH------HHHhcccc
Q 013173 226 ALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLREL------ERGVDILVATPGRLV------DLLERARV 293 (448)
Q Consensus 226 ~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l------~~~~~Ilv~Tp~~l~------~~l~~~~~ 293 (448)
+|||+|+++|+.|+++.++++ ++++..++++....+....+ ...++|+|+||++|. +.+.. ..
T Consensus 87 ~lVisP~~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~-~~ 161 (591)
T 2v1x_A 87 TLVICPLISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK-AY 161 (591)
T ss_dssp EEEECSCHHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH-HH
T ss_pred EEEEeCHHHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh-hh
Confidence 999999999999999999997 67888888888766553322 346899999999874 23332 34
Q ss_pred cCCCeeEEEEcCCcccccCC--CHHHHHH--HHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEeccccccc
Q 013173 294 SLQMIRYLALDEADRMLDMG--FEPQIRK--IVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSST 369 (448)
Q Consensus 294 ~l~~v~~lVlDEah~ll~~g--f~~~i~~--i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~ 369 (448)
.+.++++|||||||++++|| |++.+.. ++... .+..|+|+||||+++.+...+..++..+..+.+. .....
T Consensus 162 ~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~----~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~-~~~~r 236 (591)
T 2v1x_A 162 EARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQ----FPNASLIGLTATATNHVLTDAQKILCIEKCFTFT-ASFNR 236 (591)
T ss_dssp HTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHH----CTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEE-CCCCC
T ss_pred hccCCcEEEEECcccccccccccHHHHHHHHHHHHh----CCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEe-cCCCC
Confidence 57899999999999999998 8887765 33333 3458899999999999988888877643222221 12233
Q ss_pred CceeEEEEEecc--cchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCCHHHHHHhh
Q 013173 370 DLIVQRVEFVHE--SDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 370 ~~i~q~~~~~~~--~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
.++...+..... ..+...|.+++.... .+.++||||+|++.|+.+++.|...|+.+..|||+|++.+|++++
T Consensus 237 ~nl~~~v~~~~~~~~~~~~~l~~~l~~~~------~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~ 310 (591)
T 2v1x_A 237 PNLYYEVRQKPSNTEDFIEDIVKLINGRY------KGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVH 310 (591)
T ss_dssp TTEEEEEEECCSSHHHHHHHHHHHHTTTT------TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHH
T ss_pred cccEEEEEeCCCcHHHHHHHHHHHHHHhc------cCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHH
Confidence 444433332221 123344444443321 267899999999999999999999999999999999999999875
No 31
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.3e-38 Score=326.70 Aligned_cols=282 Identities=24% Similarity=0.356 Sum_probs=204.6
Q ss_pred CccCCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHHhhHhCC--CCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCC
Q 013173 141 PPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGG--RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRG 218 (448)
Q Consensus 141 ~~~~~~f~~l~L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g--~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~ 218 (448)
|.....|...++++.+.+.+.+.+|.+|+++|.++|+.++.+ ++++++++||||||++|++|++..+...
T Consensus 115 p~~l~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~-------- 186 (508)
T 3fho_A 115 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDAS-------- 186 (508)
T ss_dssp ------------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTT--------
T ss_pred ccccccccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhC--------
Confidence 344555667789999999999999999999999999999987 9999999999999999999999877443
Q ss_pred CCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCe
Q 013173 219 SRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMI 298 (448)
Q Consensus 219 ~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v 298 (448)
...+++|||+|+++|+.|+++.++++....++.+...+++..... ....++|+|+||++|.+++....+.+.++
T Consensus 187 --~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~ 260 (508)
T 3fho_A 187 --VPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKG----AKIDAQIVIGTPGTVMDLMKRRQLDARDI 260 (508)
T ss_dssp --CCSCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC--------------CCCCSEEEECHHHHHHHHHTTCSCCTTC
T ss_pred --CCCceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCccccc----ccCCCCEEEECHHHHHHHHHcCCccccCC
Confidence 234579999999999999999999998777777766665543221 23368999999999999998888889999
Q ss_pred eEEEEcCCccccc-CCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEecccccccCceeEEEE
Q 013173 299 RYLALDEADRMLD-MGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVE 377 (448)
Q Consensus 299 ~~lVlDEah~ll~-~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~ 377 (448)
++|||||||++.+ .+|...+..++..+ +...|+++||||+++.+..+...++.++..+.+.........+.+.+.
T Consensus 261 ~lIIiDEaH~~~~~~~~~~~~~~i~~~~----~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 336 (508)
T 3fho_A 261 KVFVLDEADNMLDQQGLGDQSMRIKHLL----PRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYM 336 (508)
T ss_dssp CEEEECCHHHHTTC--CHHHHHHHHHHS----CTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEE
T ss_pred CEEEEechhhhcccCCcHHHHHHHHHhC----CcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEE
Confidence 9999999999988 68999999999988 667899999999999999999999999988877766666667777666
Q ss_pred Eec-ccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCCHHHHHHhh
Q 013173 378 FVH-ESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 378 ~~~-~~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
.+. ...|...+.+++.... ..++||||++++.|+.+++.|...++.+..+||++++.+|++++
T Consensus 337 ~~~~~~~k~~~l~~ll~~~~-------~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il 400 (508)
T 3fho_A 337 DCQSEEHKYNVLVELYGLLT-------IGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIM 400 (508)
T ss_dssp EC--CHHHHHHHHHHHC----------CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGT
T ss_pred ECCchHHHHHHHHHHHHhcC-------CCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHH
Confidence 663 3455666666665542 67899999999999999999999999999999999999998765
No 32
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=8e-36 Score=311.92 Aligned_cols=269 Identities=17% Similarity=0.195 Sum_probs=211.9
Q ss_pred CCcccCCCCHHHHHHHHH-CCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCC
Q 013173 145 NTFAEIDLGEALNLNIRR-CKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVY 223 (448)
Q Consensus 145 ~~f~~l~L~~~l~~~l~~-~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~ 223 (448)
..|++++|++.+.+.+++ +||.+|+|+|.++|+.+++|+|+++++|||+|||++|++|++.. .
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~----------------~ 65 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL----------------N 65 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS----------------S
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh----------------C
Confidence 579999999999999998 89999999999999999999999999999999999999998842 1
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHH---HH-hcCccEEEeChHHHHHHHhcccccCCCee
Q 013173 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLR---EL-ERGVDILVATPGRLVDLLERARVSLQMIR 299 (448)
Q Consensus 224 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l-~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~ 299 (448)
..+|||+|+++|+.|+.+.++++ ++.+..++++........ .+ ...++|+|+||++|........+...+++
T Consensus 66 g~~lvi~P~~aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~ 141 (523)
T 1oyw_A 66 GLTVVVSPLISLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPV 141 (523)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEE
T ss_pred CCEEEECChHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCC
Confidence 35999999999999999999985 677888888877654432 22 23489999999999643222334458899
Q ss_pred EEEEcCCcccccCC--CHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhh--cCcEEEEecccccccCceeEE
Q 013173 300 YLALDEADRMLDMG--FEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFL--ANYIFLAVGRVGSSTDLIVQR 375 (448)
Q Consensus 300 ~lVlDEah~ll~~g--f~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l--~~~~~i~v~~~~~~~~~i~q~ 375 (448)
+|||||||++++|| |.+.+..+...+.. .+..++++||||+++.+...+...+ .++..+ +. .....++ .
T Consensus 142 ~vViDEaH~i~~~g~~fr~~~~~l~~l~~~--~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~-~~--~~~r~~l--~ 214 (523)
T 1oyw_A 142 LLAVDEAHCISQWGHDFRPEYAALGQLRQR--FPTLPFMALTATADDTTRQDIVRLLGLNDPLIQ-IS--SFDRPNI--R 214 (523)
T ss_dssp EEEESSGGGGCTTSSCCCHHHHGGGGHHHH--CTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEE-EC--CCCCTTE--E
T ss_pred EEEEeCccccCcCCCccHHHHHHHHHHHHh--CCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEE-eC--CCCCCce--E
Confidence 99999999999998 87777655322211 1247899999999998876555444 344333 22 1223344 3
Q ss_pred EEEecccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCCHHHHHHhh
Q 013173 376 VEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 376 ~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
+.......+...+.+++.... +.++||||+|++.|+.+++.|...|+.+..+||+|++.+|++++
T Consensus 215 ~~v~~~~~~~~~l~~~l~~~~-------~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~ 279 (523)
T 1oyw_A 215 YMLMEKFKPLDQLMRYVQEQR-------GKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQ 279 (523)
T ss_dssp EEEEECSSHHHHHHHHHHHTT-------TCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHH
T ss_pred EEEEeCCCHHHHHHHHHHhcC-------CCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHH
Confidence 444555677788888887642 67899999999999999999999999999999999999999875
No 33
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=1.5e-36 Score=308.58 Aligned_cols=251 Identities=22% Similarity=0.204 Sum_probs=201.0
Q ss_pred HHHHHHHH-CCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcH
Q 013173 155 ALNLNIRR-CKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTR 233 (448)
Q Consensus 155 ~l~~~l~~-~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr 233 (448)
++.+.+++ ++| +|+|+|.++|+.++.++|+++++|||||||++|++|++..+. .++++|||+||+
T Consensus 9 ~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~-------------~~~~~lil~Pt~ 74 (414)
T 3oiy_A 9 DFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR-------------KGKKSALVFPTV 74 (414)
T ss_dssp HHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHT-------------TTCCEEEEESSH
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhc-------------CCCEEEEEECCH
Confidence 34455554 355 899999999999999999999999999999999999887551 235699999999
Q ss_pred HHHHHHHHHHHHhcccCCcEEEEEECCCCh---HHHHHHHhcC-ccEEEeChHHHHHHHhcccccCCCeeEEEEcCCccc
Q 013173 234 ELSSQIHVEAKKFSYQTGVKVVVAYGGAPI---NQQLRELERG-VDILVATPGRLVDLLERARVSLQMIRYLALDEADRM 309 (448)
Q Consensus 234 eL~~qi~~~~~~~~~~~~~~~~~~~gg~~~---~~~~~~l~~~-~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~l 309 (448)
+|+.|+++.+++++. .++++..++|+.+. ..+...+..+ ++|+|+||++|.+++.. +.+.++++|||||||++
T Consensus 75 ~L~~q~~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~ 151 (414)
T 3oiy_A 75 TLVKQTLERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAV 151 (414)
T ss_dssp HHHHHHHHHHHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHH
T ss_pred HHHHHHHHHHHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhh
Confidence 999999999999987 78999999999998 5566777776 99999999999988874 56789999999999765
Q ss_pred c----------c-CCCHHH-HHHHHHHcC-------CCCCCCcEEEEEecc-CchHHH-HHHHhhhcCcEEEEecccccc
Q 013173 310 L----------D-MGFEPQ-IRKIVQQMD-------MPPPGMRQTMLFSAT-FPKEIQ-RLASDFLANYIFLAVGRVGSS 368 (448)
Q Consensus 310 l----------~-~gf~~~-i~~i~~~l~-------~~~~~~~q~i~~SAT-~~~~v~-~l~~~~l~~~~~i~v~~~~~~ 368 (448)
+ + ++|.++ +..++..+. .......|+++|||| .|..+. .+...++. +.+......
T Consensus 152 ~~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~~~~~ 227 (414)
T 3oiy_A 152 LKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSV 227 (414)
T ss_dssp HHCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSCCCCC
T ss_pred hhccchhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCccccc
Confidence 4 4 788888 888888762 111167899999999 676655 33333332 333344455
Q ss_pred cCceeEEEEEecccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCCeE-EecCC
Q 013173 369 TDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPAT-TIHGD 437 (448)
Q Consensus 369 ~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~~~-~iHg~ 437 (448)
..++.+.+..+ +|...|.+++... +.++||||+++..|+.+++.|...|+++. .+||+
T Consensus 228 ~~~i~~~~~~~---~~~~~l~~~l~~~--------~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~ 286 (414)
T 3oiy_A 228 ARNITHVRISS---RSKEKLVELLEIF--------RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF 286 (414)
T ss_dssp CCSEEEEEESS---CCHHHHHHHHHHH--------CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH
T ss_pred cccchheeecc---CHHHHHHHHHHHc--------CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc
Confidence 66777766544 5677788888773 57899999999999999999999999998 99996
No 34
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=5.3e-35 Score=311.53 Aligned_cols=262 Identities=16% Similarity=0.180 Sum_probs=199.3
Q ss_pred HCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHH
Q 013173 162 RCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHV 241 (448)
Q Consensus 162 ~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~ 241 (448)
.+|| +|||+|..++|.++.|+ |++++||+|||++|++|++...+. ++.|+||+||++||.|+++
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~-------------g~~vlVltptreLA~qd~e 142 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALT-------------GKGVHVVTVNEYLASRDAE 142 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTT-------------SSCEEEEESSHHHHHHHHH
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHc-------------CCCEEEEeCCHHHHHHHHH
Confidence 5799 99999999999999999 999999999999999999854332 2359999999999999999
Q ss_pred HHHHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHH-HHHHhcc------cccCCCeeEEEEcCCcccc-cCC
Q 013173 242 EAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRL-VDLLERA------RVSLQMIRYLALDEADRML-DMG 313 (448)
Q Consensus 242 ~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l-~~~l~~~------~~~l~~v~~lVlDEah~ll-~~g 313 (448)
.+..|....++++.+++||.+... +....+|||+|+||++| .++|... .+.+..+.++||||||+|| +++
T Consensus 143 ~~~~l~~~lgl~v~~i~gg~~~~~--r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea 220 (844)
T 1tf5_A 143 QMGKIFEFLGLTVGLNLNSMSKDE--KREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEA 220 (844)
T ss_dssp HHHHHHHHTTCCEEECCTTSCHHH--HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTT
T ss_pred HHHHHHhhcCCeEEEEeCCCCHHH--HHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhcc
Confidence 999999989999999999988643 34445799999999999 6776543 3568999999999999998 775
Q ss_pred ---------------CHHHHHHHHHHcCC-----CCCCCcEEE-----------------EEeccCch---HHHHHH--H
Q 013173 314 ---------------FEPQIRKIVQQMDM-----PPPGMRQTM-----------------LFSATFPK---EIQRLA--S 351 (448)
Q Consensus 314 ---------------f~~~i~~i~~~l~~-----~~~~~~q~i-----------------~~SAT~~~---~v~~l~--~ 351 (448)
|..++..|+..+.. ..++.+|++ +||||++. .+...+ .
T Consensus 221 ~tplIisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~ 300 (844)
T 1tf5_A 221 RTPLIISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAH 300 (844)
T ss_dssp TCEEEEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHH
T ss_pred ccchhhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHH
Confidence 66888999988831 012468888 99999874 444332 2
Q ss_pred hhhc---CcEE-----EEec-----------------------------ccccccCcee---------------------
Q 013173 352 DFLA---NYIF-----LAVG-----------------------------RVGSSTDLIV--------------------- 373 (448)
Q Consensus 352 ~~l~---~~~~-----i~v~-----------------------------~~~~~~~~i~--------------------- 373 (448)
.++. +|+. +.|+ ....+...|.
T Consensus 301 ~l~~~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te 380 (844)
T 1tf5_A 301 VAMQKDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTE 380 (844)
T ss_dssp HTCCBTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGG
T ss_pred HHhhcCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchh
Confidence 2222 2221 0110 0000000111
Q ss_pred --------------------------EEEEEecccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHC
Q 013173 374 --------------------------QRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN 427 (448)
Q Consensus 374 --------------------------q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~ 427 (448)
+.+.++...+|...|.+++...... +.++||||+|++.|+.|+..|...
T Consensus 381 ~~e~~~iY~l~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~-----~~pvLVft~s~~~se~Ls~~L~~~ 455 (844)
T 1tf5_A 381 EEEFRNIYNMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMT-----GQPVLVGTVAVETSELISKLLKNK 455 (844)
T ss_dssp HHHHHHHHCCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHH-----TCCEEEEESCHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhc-----CCcEEEEECCHHHHHHHHHHHHHC
Confidence 1244556678888888888753211 668999999999999999999999
Q ss_pred CCCeEEecCCCCHHHHHHh
Q 013173 428 GFPATTIHGDRTQQRTSIE 446 (448)
Q Consensus 428 g~~~~~iHg~~~q~eR~~~ 446 (448)
|+++.+|||++.+.||+.+
T Consensus 456 gi~~~vLhg~~~~rEr~ii 474 (844)
T 1tf5_A 456 GIPHQVLNAKNHEREAQII 474 (844)
T ss_dssp TCCCEEECSSCHHHHHHHH
T ss_pred CCCEEEeeCCccHHHHHHH
Confidence 9999999999998888644
No 35
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-34 Score=323.98 Aligned_cols=269 Identities=17% Similarity=0.172 Sum_probs=208.4
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCc
Q 013173 145 NTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYP 224 (448)
Q Consensus 145 ~~f~~l~L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~ 224 (448)
..|..+++++.+...+....+..|+|+|+++|+.++.++|++++|+||||||++|++|++..+.. +.
T Consensus 162 ~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~-------------g~ 228 (1108)
T 3l9o_A 162 PNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN-------------KQ 228 (1108)
T ss_dssp SCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHT-------------TC
T ss_pred CCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhc-------------CC
Confidence 35777777777777777777788999999999999999999999999999999999999987732 24
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEc
Q 013173 225 LALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALD 304 (448)
Q Consensus 225 ~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlD 304 (448)
++||++||++|+.|+++.+.++.. .+.+++|+... ...++|+|+||++|.+++......+.++++||||
T Consensus 229 rvlvl~PtraLa~Q~~~~l~~~~~----~VglltGd~~~-------~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVID 297 (1108)
T 3l9o_A 229 RVIYTSPIKALSNQKYRELLAEFG----DVGLMTGDITI-------NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFD 297 (1108)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHTS----SEEEECSSCBC-------CCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEE
T ss_pred eEEEEcCcHHHHHHHHHHHHHHhC----CccEEeCcccc-------CCCCCEEEeChHHHHHHHHcCccccccCCEEEEh
Confidence 699999999999999999999754 56677887763 3458999999999999998887778999999999
Q ss_pred CCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchH--HHHHHHhhhcCcEEEEecccccccCceeEEEEE----
Q 013173 305 EADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKE--IQRLASDFLANYIFLAVGRVGSSTDLIVQRVEF---- 378 (448)
Q Consensus 305 Eah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~--v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~---- 378 (448)
|||+|++++|...+..++..+ +...|+|+||||++.. +..++..++.++..+...... ...+.+++..
T Consensus 298 EaH~l~d~~rg~~~e~ii~~l----~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~r--p~pl~~~~~~~~~~ 371 (1108)
T 3l9o_A 298 EVHYMRDKERGVVWEETIILL----PDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFR--PTPLQHYLFPAHGD 371 (1108)
T ss_dssp TGGGTTSHHHHHHHHHHHHHS----CTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCC--SSCEEEEEEETTSS
T ss_pred hhhhccccchHHHHHHHHHhc----CCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCC--cccceEEEeecCCc
Confidence 999999999999999999998 6789999999999764 557777777666665443221 1122222211
Q ss_pred -----ecccc----------------------------------------h---HHHHHHHHHHHHhcCCCCCCCcEEEE
Q 013173 379 -----VHESD----------------------------------------K---RSHLMDLLHAQVANGVHGKQALTLVF 410 (448)
Q Consensus 379 -----~~~~~----------------------------------------k---~~~L~~ll~~~~~~~~~~~~~~tlVF 410 (448)
+.... + ...+..++...... ...++|||
T Consensus 372 ~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~----~~~~vIVF 447 (1108)
T 3l9o_A 372 GIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKK----KYNPVIVF 447 (1108)
T ss_dssp CCEEEEETTTEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHT----TCCCEEEE
T ss_pred ceeeeeccccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhc----CCCCEEEE
Confidence 10000 0 23333344333221 25689999
Q ss_pred eCchhhHHHHHHHHHHCCCC---------------------------------------eEEecCCCCHHHHHHhh
Q 013173 411 VETKKGADALEHWLYMNGFP---------------------------------------ATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 411 ~~t~~~a~~l~~~L~~~g~~---------------------------------------~~~iHg~~~q~eR~~~l 447 (448)
|++++.|+.++..|...++. +..+||+|++.+|+.++
T Consensus 448 ~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~ 523 (1108)
T 3l9o_A 448 SFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIE 523 (1108)
T ss_dssp ESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHH
T ss_pred eCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHH
Confidence 99999999999998653332 78999999999999875
No 36
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=1.1e-33 Score=307.04 Aligned_cols=267 Identities=18% Similarity=0.216 Sum_probs=207.4
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCCHHHHhHHhh-HhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCc
Q 013173 146 TFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPI-SIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYP 224 (448)
Q Consensus 146 ~f~~l~L~~~l~~~l~~~~~~~pt~~Q~~~i~~-i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~ 224 (448)
+|++++|++.+.+.+++.||.+|+|+|.++++. +..++++++++|||||||++|.+|+++.+... +.
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~------------~~ 69 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ------------GG 69 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH------------CS
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC------------CC
Confidence 589999999999999999999999999999998 78999999999999999999999999887643 24
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEc
Q 013173 225 LALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALD 304 (448)
Q Consensus 225 ~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlD 304 (448)
++||++|+++|+.|+++.++++.. .++++..++|+...... ....++|+|+||++|..++......++++++||||
T Consensus 70 ~~l~i~P~raLa~q~~~~~~~l~~-~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiD 145 (720)
T 2zj8_A 70 KAVYIVPLKALAEEKFQEFQDWEK-IGLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVAD 145 (720)
T ss_dssp EEEEECSSGGGHHHHHHHTGGGGG-GTCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEE
T ss_pred EEEEEcCcHHHHHHHHHHHHHHHh-cCCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEE
Confidence 699999999999999999987654 47899998887664332 12358999999999999998876668999999999
Q ss_pred CCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEecccccccCceeEEE------EE
Q 013173 305 EADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRV------EF 378 (448)
Q Consensus 305 Eah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~------~~ 378 (448)
|||++.++++...+..++..+. ...|+|+||||+++ ...++. ++....+. . ......+...+ .+
T Consensus 146 E~H~l~~~~r~~~~~~ll~~l~----~~~~ii~lSATl~n-~~~~~~-~l~~~~~~-~---~~rp~~l~~~~~~~~~~~~ 215 (720)
T 2zj8_A 146 EIHLIGSRDRGATLEVILAHML----GKAQIIGLSATIGN-PEELAE-WLNAELIV-S---DWRPVKLRRGVFYQGFVTW 215 (720)
T ss_dssp TGGGGGCTTTHHHHHHHHHHHB----TTBEEEEEECCCSC-HHHHHH-HTTEEEEE-C---CCCSSEEEEEEEETTEEEE
T ss_pred CCcccCCCcccHHHHHHHHHhh----cCCeEEEEcCCcCC-HHHHHH-HhCCcccC-C---CCCCCcceEEEEeCCeeec
Confidence 9999999899999999999984 37899999999975 344444 33322111 0 00111111111 11
Q ss_pred ec-----ccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHC------------------C-------
Q 013173 379 VH-----ESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN------------------G------- 428 (448)
Q Consensus 379 ~~-----~~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~------------------g------- 428 (448)
.. ...+...+.+.+.. ++++||||++++.|+.++..|... +
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~---------~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 286 (720)
T 2zj8_A 216 EDGSIDRFSSWEELVYDAIRK---------KKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTN 286 (720)
T ss_dssp TTSCEEECSSTTHHHHHHHHT---------TCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHH
T ss_pred cccchhhhhHHHHHHHHHHhC---------CCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccch
Confidence 11 12333444444321 678999999999999999999753 1
Q ss_pred --------CCeEEecCCCCHHHHHHhh
Q 013173 429 --------FPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 429 --------~~~~~iHg~~~q~eR~~~l 447 (448)
..+..+||+|++.+|+.++
T Consensus 287 ~~l~~~~~~~v~~~h~~l~~~~R~~v~ 313 (720)
T 2zj8_A 287 EKLAKAIRGGVAFHHAGLGRDERVLVE 313 (720)
T ss_dssp HHHHHHHTTTEEEECTTSCHHHHHHHH
T ss_pred HHHHHHHhcCeeeecCCCCHHHHHHHH
Confidence 2489999999999998764
No 37
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=6.8e-33 Score=300.71 Aligned_cols=271 Identities=20% Similarity=0.244 Sum_probs=205.6
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCCHHHHhHHhh-HhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCC
Q 013173 145 NTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPI-SIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVY 223 (448)
Q Consensus 145 ~~f~~l~L~~~l~~~l~~~~~~~pt~~Q~~~i~~-i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~ 223 (448)
.+|++++|++.+.+.+...||.+|+|+|.++++. +..++++++++|||||||++|.+++++.+... +
T Consensus 8 ~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~------------~ 75 (715)
T 2va8_A 8 MPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN------------G 75 (715)
T ss_dssp CBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS------------C
T ss_pred CcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC------------C
Confidence 4699999999999999999999999999999998 77899999999999999999999999887532 2
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEE
Q 013173 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLAL 303 (448)
Q Consensus 224 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVl 303 (448)
.++||++|+++||.|+++.++++.. .++++..++|+...... .+ ..++|+|+||++|..++......++++++|||
T Consensus 76 ~~il~i~P~r~La~q~~~~~~~~~~-~g~~v~~~~G~~~~~~~--~~-~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIi 151 (715)
T 2va8_A 76 GKAIYVTPLRALTNEKYLTFKDWEL-IGFKVAMTSGDYDTDDA--WL-KNYDIIITTYEKLDSLWRHRPEWLNEVNYFVL 151 (715)
T ss_dssp SEEEEECSCHHHHHHHHHHHGGGGG-GTCCEEECCSCSSSCCG--GG-GGCSEEEECHHHHHHHHHHCCGGGGGEEEEEE
T ss_pred CeEEEEeCcHHHHHHHHHHHHHhhc-CCCEEEEEeCCCCCchh--hc-CCCCEEEEcHHHHHHHHhCChhHhhccCEEEE
Confidence 4799999999999999999976643 47888888887665432 12 35899999999999999887666899999999
Q ss_pred cCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEecccccccCceeE---------
Q 013173 304 DEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQ--------- 374 (448)
Q Consensus 304 DEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q--------- 374 (448)
||||++.+.++...+..++..+. ..|+|+||||+++ ...++. ++..+.+... ..+. .+..
T Consensus 152 DE~H~l~~~~~~~~l~~i~~~~~-----~~~ii~lSATl~n-~~~~~~-~l~~~~~~~~---~r~~-~l~~~~~~~~~~~ 220 (715)
T 2va8_A 152 DELHYLNDPERGPVVESVTIRAK-----RRNLLALSATISN-YKQIAK-WLGAEPVATN---WRPV-PLIEGVIYPERKK 220 (715)
T ss_dssp CSGGGGGCTTTHHHHHHHHHHHH-----TSEEEEEESCCTT-HHHHHH-HHTCEEEECC---CCSS-CEEEEEEEECSST
T ss_pred echhhcCCcccchHHHHHHHhcc-----cCcEEEEcCCCCC-HHHHHH-HhCCCccCCC---CCCC-CceEEEEecCCcc
Confidence 99999998889999999998883 6899999999975 244444 3332221110 0011 1111
Q ss_pred ---EEEEeccc----chHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCC-------------------
Q 013173 375 ---RVEFVHES----DKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNG------------------- 428 (448)
Q Consensus 375 ---~~~~~~~~----~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g------------------- 428 (448)
.+.+.+.. .....+.+++..... .++++||||++++.|+.++..|....
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~ 295 (715)
T 2va8_A 221 KEYNVIFKDNTTKKVHGDDAIIAYTLDSLS-----KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDD 295 (715)
T ss_dssp TEEEEEETTSCEEEEESSSHHHHHHHHHHT-----TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHT
T ss_pred cceeeecCcchhhhcccchHHHHHHHHHHh-----cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHH
Confidence 11111100 000122333332221 26789999999999999999998652
Q ss_pred -----------------CCeEEecCCCCHHHHHHhh
Q 013173 429 -----------------FPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 429 -----------------~~~~~iHg~~~q~eR~~~l 447 (448)
..+..+||+|++.+|+.++
T Consensus 296 i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~ 331 (715)
T 2va8_A 296 IEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIE 331 (715)
T ss_dssp CCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHH
T ss_pred hhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHH
Confidence 2489999999999998774
No 38
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=1.9e-33 Score=315.19 Aligned_cols=244 Identities=22% Similarity=0.217 Sum_probs=201.0
Q ss_pred HCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHH
Q 013173 162 RCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHV 241 (448)
Q Consensus 162 ~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~ 241 (448)
.++| +|||+|.++||.++.|+|++++||||||||++|++|++..+. .++++|||+||++||.|+++
T Consensus 74 ~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~-------------~~~~~Lil~PtreLa~Q~~~ 139 (1104)
T 4ddu_A 74 KFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR-------------KGKKSALVFPTVTLVKQTLE 139 (1104)
T ss_dssp HSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHT-------------TTCCEEEEESSHHHHHHHHH
T ss_pred hcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHh-------------cCCeEEEEechHHHHHHHHH
Confidence 4677 799999999999999999999999999999998888887652 23569999999999999999
Q ss_pred HHHHhcccCCcEEEEEECCCCh---HHHHHHHhcC-ccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcc---------
Q 013173 242 EAKKFSYQTGVKVVVAYGGAPI---NQQLRELERG-VDILVATPGRLVDLLERARVSLQMIRYLALDEADR--------- 308 (448)
Q Consensus 242 ~~~~~~~~~~~~~~~~~gg~~~---~~~~~~l~~~-~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~--------- 308 (448)
.+++|+ ..++++..++|+.+. ..+...+..+ ++|+|+||++|.+++.. +.+.++++|||||||+
T Consensus 140 ~l~~l~-~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~D 216 (1104)
T 4ddu_A 140 RLQKLA-DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNID 216 (1104)
T ss_dssp HHHTTS-CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHH
T ss_pred HHHHhh-CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccch
Confidence 999988 778999999999988 6677778776 99999999999998874 6788999999999965
Q ss_pred -ccc-CCCHHH-HHHHHHHcC-------CCCCCCcEEEEEecc-CchHHHH-HHHhhhcCcEEEEecccccccCceeEEE
Q 013173 309 -MLD-MGFEPQ-IRKIVQQMD-------MPPPGMRQTMLFSAT-FPKEIQR-LASDFLANYIFLAVGRVGSSTDLIVQRV 376 (448)
Q Consensus 309 -ll~-~gf~~~-i~~i~~~l~-------~~~~~~~q~i~~SAT-~~~~v~~-l~~~~l~~~~~i~v~~~~~~~~~i~q~~ 376 (448)
|++ +||.++ +..++..+. ......+|+++|||| .|..+.. +...++. +.+........++.+.+
T Consensus 217 r~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~~~~~~~~i~~~~ 292 (1104)
T 4ddu_A 217 TLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVR 292 (1104)
T ss_dssp HHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCBCCCCCCCEEEEE
T ss_pred hhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEeccCCCCcCCceeEE
Confidence 555 899888 889998772 111167899999999 6766553 3333332 44455556677788777
Q ss_pred EEecccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCCeE-EecCC
Q 013173 377 EFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPAT-TIHGD 437 (448)
Q Consensus 377 ~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~~~-~iHg~ 437 (448)
..+ +|...|.+++... +.++||||++++.|+.|++.|...|+++. .+||+
T Consensus 293 ~~~---~k~~~L~~ll~~~--------~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~ 343 (1104)
T 4ddu_A 293 ISS---RSKEKLVELLEIF--------RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF 343 (1104)
T ss_dssp ESC---CCHHHHHHHHHHH--------CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSH
T ss_pred Eec---CHHHHHHHHHHhc--------CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCc
Confidence 655 5777788888773 57899999999999999999999999998 99994
No 39
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=5.5e-33 Score=291.96 Aligned_cols=171 Identities=20% Similarity=0.202 Sum_probs=134.9
Q ss_pred CCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q 013173 164 KYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEA 243 (448)
Q Consensus 164 ~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~ 243 (448)
+..+|+|+|.++|+.++.++|+++++|||+|||++|++|+++.+.... ....+++|||+||++|+.|+++.+
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~--------~~~~~~~lil~P~~~L~~q~~~~~ 75 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP--------AGRKAKVVFLATKVPVYEQQKNVF 75 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC--------SSCCCCEEEECSSHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCc--------ccCCCeEEEEeCCHHHHHHHHHHH
Confidence 456899999999999999999999999999999999999998876532 122467999999999999999999
Q ss_pred HHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccc-cCCCeeEEEEcCCcccccCCCHHHH-HHH
Q 013173 244 KKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARV-SLQMIRYLALDEADRMLDMGFEPQI-RKI 321 (448)
Q Consensus 244 ~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~-~l~~v~~lVlDEah~ll~~gf~~~i-~~i 321 (448)
+++....++++..++|+.....+...+..+++|+|+||++|.+++....+ .+.++++|||||||++.++++...+ ..+
T Consensus 76 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~ 155 (556)
T 4a2p_A 76 KHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRY 155 (556)
T ss_dssp HHHHGGGTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHH
T ss_pred HHHhcccCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHH
Confidence 99988778999999999887776677777799999999999999988877 7999999999999999988754333 222
Q ss_pred HH-HcCCCCCCCcEEEEEeccCc
Q 013173 322 VQ-QMDMPPPGMRQTMLFSATFP 343 (448)
Q Consensus 322 ~~-~l~~~~~~~~q~i~~SAT~~ 343 (448)
+. .+.. .....|+++||||++
T Consensus 156 ~~~~~~~-~~~~~~~l~lSAT~~ 177 (556)
T 4a2p_A 156 LEQKFNS-ASQLPQILGLTASVG 177 (556)
T ss_dssp HHHHHCC----CCEEEEEESCCC
T ss_pred HHhhhcc-cCCCCeEEEEeCCcc
Confidence 22 2211 234578999999984
No 40
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=1.5e-33 Score=304.87 Aligned_cols=179 Identities=17% Similarity=0.204 Sum_probs=141.9
Q ss_pred HHHHHHCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHH
Q 013173 157 NLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELS 236 (448)
Q Consensus 157 ~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~ 236 (448)
.+++..+||.+|+|+|.++|+.++.++|+++++|||+|||++|++|+++.+..... ...+++|||+||++|+
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~--------~~~~~~lvl~Pt~~L~ 74 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQ--------GQKGKVVFFANQIPVY 74 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCT--------TCCCCEEEECSSHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCcc--------CCCCeEEEEECCHHHH
Confidence 34567789999999999999999999999999999999999999999988765321 1235699999999999
Q ss_pred HHHHHHHHHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccc-cCCCeeEEEEcCCcccccCC-C
Q 013173 237 SQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARV-SLQMIRYLALDEADRMLDMG-F 314 (448)
Q Consensus 237 ~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~-~l~~v~~lVlDEah~ll~~g-f 314 (448)
.|+.+++++++...++++..++|+.....+...+..+++|+|+||++|.+++....+ .+.++++|||||||++.... +
T Consensus 75 ~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~ 154 (696)
T 2ykg_A 75 EQNKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPY 154 (696)
T ss_dssp HHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHH
T ss_pred HHHHHHHHHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccH
Confidence 999999999987778999999999876666666667799999999999999988776 78999999999999998654 2
Q ss_pred HHHHHHHHH-HcCCCCCCCcEEEEEeccCc
Q 013173 315 EPQIRKIVQ-QMDMPPPGMRQTMLFSATFP 343 (448)
Q Consensus 315 ~~~i~~i~~-~l~~~~~~~~q~i~~SAT~~ 343 (448)
...+...+. .+........|+|+||||+.
T Consensus 155 ~~i~~~~l~~~~~~~~~~~~~il~LTATp~ 184 (696)
T 2ykg_A 155 NMIMFNYLDQKLGGSSGPLPQVIGLTASVG 184 (696)
T ss_dssp HHHHHHHHHHHHTTCCSCCCEEEEEESCCC
T ss_pred HHHHHHHHHHhhcccCCCCCeEEEEeCccc
Confidence 222222222 22222345679999999986
No 41
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=2.7e-33 Score=297.69 Aligned_cols=261 Identities=16% Similarity=0.168 Sum_probs=173.4
Q ss_pred CCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 013173 163 CKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVE 242 (448)
Q Consensus 163 ~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~ 242 (448)
+|. +|+++|..++|.++.|+ ++.++||+|||++|++|++...+. ++.++||+||++||.|+++.
T Consensus 71 lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~-------------g~~vlVltPTreLA~Q~~e~ 134 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALT-------------GKGVHVVTVNDYLAQRDAEN 134 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTT-------------SSCCEEEESSHHHHHHHHHH
T ss_pred cCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHc-------------CCcEEEEcCCHHHHHHHHHH
Confidence 454 89999999999999998 999999999999999999865432 24599999999999999999
Q ss_pred HHHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHH-HHHHhcc------cccCCCeeEEEEcCCcccc-cCC-
Q 013173 243 AKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRL-VDLLERA------RVSLQMIRYLALDEADRML-DMG- 313 (448)
Q Consensus 243 ~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l-~~~l~~~------~~~l~~v~~lVlDEah~ll-~~g- 313 (448)
+..|....++++.+++||.+.. .+.+..++||+|+||++| .++|..+ .+.++.+.++||||||+|| +++
T Consensus 135 ~~~l~~~lgl~v~~i~GG~~~~--~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~ 212 (853)
T 2fsf_A 135 NRPLFEFLGLTVGINLPGMPAP--AKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEAR 212 (853)
T ss_dssp HHHHHHHTTCCEEECCTTCCHH--HHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTT
T ss_pred HHHHHHhcCCeEEEEeCCCCHH--HHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCc
Confidence 9999999999999999998864 445556799999999999 7888754 2567999999999999999 543
Q ss_pred --------------CHHHHHHHHHHcCCC----------------CCCCcEEE------------------------EEe
Q 013173 314 --------------FEPQIRKIVQQMDMP----------------PPGMRQTM------------------------LFS 339 (448)
Q Consensus 314 --------------f~~~i~~i~~~l~~~----------------~~~~~q~i------------------------~~S 339 (448)
|...+..|+..+... .++.+|++ +||
T Consensus 213 tpLIiSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfs 292 (853)
T 2fsf_A 213 TPLIISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYS 292 (853)
T ss_dssp CEEEEEEC------------------------------------------------------------------------
T ss_pred ccccccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccC
Confidence 667888888887320 01256664 899
Q ss_pred ccCchH---HHHHH--Hhhhc---Cc----------------------------------EEEEecccccccCceeE---
Q 013173 340 ATFPKE---IQRLA--SDFLA---NY----------------------------------IFLAVGRVGSSTDLIVQ--- 374 (448)
Q Consensus 340 AT~~~~---v~~l~--~~~l~---~~----------------------------------~~i~v~~~~~~~~~i~q--- 374 (448)
||++.. +...+ ..++. +| ..+.+.....+...|.+
T Consensus 293 at~~~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qny 372 (853)
T 2fsf_A 293 PANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNY 372 (853)
T ss_dssp ----------------------------------------------------------------CCCCCEEEEEEEHHHH
T ss_pred cccchHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHH
Confidence 997642 22211 11111 00 11122112222222221
Q ss_pred --------------------------------------------EEEEecccchHHHHHHHHHHHHhcCCCCCCCcEEEE
Q 013173 375 --------------------------------------------RVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVF 410 (448)
Q Consensus 375 --------------------------------------------~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~tlVF 410 (448)
.+.++...+|...+.+++..... .+.++|||
T Consensus 373 fr~Y~kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~-----~gqpvLVf 447 (853)
T 2fsf_A 373 FRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTA-----KGQPVLVG 447 (853)
T ss_dssp HTTSSEEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHT-----TTCCEEEE
T ss_pred HhhhhhhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhc-----CCCCEEEE
Confidence 23556677888888888865432 26789999
Q ss_pred eCchhhHHHHHHHHHHCCCCeEEecCCCCHHHHHHh
Q 013173 411 VETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIE 446 (448)
Q Consensus 411 ~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~ 446 (448)
|+|++.++.|+..|...|+++.+|||++.+.||..+
T Consensus 448 t~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~ii 483 (853)
T 2fsf_A 448 TISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIV 483 (853)
T ss_dssp ESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHH
T ss_pred ECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHH
Confidence 999999999999999999999999999888887654
No 42
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=1.4e-33 Score=305.50 Aligned_cols=269 Identities=17% Similarity=0.189 Sum_probs=202.4
Q ss_pred CcccCC--CCHHHHHHHHHCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCC
Q 013173 146 TFAEID--LGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVY 223 (448)
Q Consensus 146 ~f~~l~--L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~ 223 (448)
+|++++ |++.+.+.+++.||.+|+|+|.++++.+..++|+++++|||||||++|.+|+++.+.. +
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~-------------~ 68 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK-------------G 68 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT-------------T
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh-------------C
Confidence 588888 9999999999999999999999999999999999999999999999999999987653 2
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEE
Q 013173 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLAL 303 (448)
Q Consensus 224 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVl 303 (448)
+++||++|+++||.|+++.++++.. .++++..++|+...... ....++|+|+||++|..++.+....++++++|||
T Consensus 69 ~~~l~i~P~r~La~q~~~~~~~~~~-~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIi 144 (702)
T 2p6r_A 69 GKSLYVVPLRALAGEKYESFKKWEK-IGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVV 144 (702)
T ss_dssp CCEEEEESSHHHHHHHHHHHTTTTT-TTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEE
T ss_pred CcEEEEeCcHHHHHHHHHHHHHHHh-cCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEE
Confidence 4599999999999999999976643 47889988887664332 1236899999999999999887666899999999
Q ss_pred cCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEecccccccCceeEEE------E
Q 013173 304 DEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRV------E 377 (448)
Q Consensus 304 DEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~------~ 377 (448)
||||++.++++...+..++..+... ....|+|+||||+++ ...++. ++..+.+.... . ...+...+ .
T Consensus 145 DE~H~l~~~~r~~~~~~ll~~l~~~-~~~~~ii~lSATl~n-~~~~~~-~l~~~~~~~~~---r-~~~l~~~~~~~~~~~ 217 (702)
T 2p6r_A 145 DEIHLLDSEKRGATLEILVTKMRRM-NKALRVIGLSATAPN-VTEIAE-WLDADYYVSDW---R-PVPLVEGVLCEGTLE 217 (702)
T ss_dssp TTGGGGGCTTTHHHHHHHHHHHHHH-CTTCEEEEEECCCTT-HHHHHH-HTTCEEEECCC---C-SSCEEEEEECSSEEE
T ss_pred eeeeecCCCCcccHHHHHHHHHHhc-CcCceEEEECCCcCC-HHHHHH-HhCCCcccCCC---C-CccceEEEeeCCeee
Confidence 9999999989988888887776322 346899999999985 455554 44333221111 1 11111111 1
Q ss_pred Eecccc-------hHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHC-----------------------
Q 013173 378 FVHESD-------KRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN----------------------- 427 (448)
Q Consensus 378 ~~~~~~-------k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~----------------------- 427 (448)
+..... +...+.+.+. .++++||||++++.|+.++..|...
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~ 288 (702)
T 2p6r_A 218 LFDGAFSTSRRVKFEELVEECVA---------ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMS 288 (702)
T ss_dssp EEETTEEEEEECCHHHHHHHHHH---------TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHH
T ss_pred ccCcchhhhhhhhHHHHHHHHHh---------cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhcccccc
Confidence 111111 3334444332 1678999999999999999998753
Q ss_pred -------CCCeEEecCCCCHHHHHHhh
Q 013173 428 -------GFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 428 -------g~~~~~iHg~~~q~eR~~~l 447 (448)
+..+..+||+|++++|+.++
T Consensus 289 ~~l~~~~~~~v~~~h~~l~~~~R~~v~ 315 (702)
T 2p6r_A 289 RKLAECVRKGAAFHHAGLLNGQRRVVE 315 (702)
T ss_dssp HHHHHHHHTTCCEECTTSCHHHHHHHH
T ss_pred HHHHHHHhcCeEEecCCCCHHHHHHHH
Confidence 23578899999999998764
No 43
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=6.6e-32 Score=283.35 Aligned_cols=171 Identities=16% Similarity=0.189 Sum_probs=141.6
Q ss_pred CCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013173 166 VKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK 245 (448)
Q Consensus 166 ~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~ 245 (448)
.+|+|+|.++|+.++.++|++++++||+|||++|++|+++.+.... ....+++|||+||++|+.|+++.+++
T Consensus 3 ~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~--------~~~~~~~lil~P~~~L~~q~~~~~~~ 74 (555)
T 3tbk_A 3 LKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFP--------CGQKGKVVFFANQIPVYEQQATVFSR 74 (555)
T ss_dssp CCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC--------SSCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcc--------cCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 3799999999999999999999999999999999999998886542 12246799999999999999999999
Q ss_pred hcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccc-cCCCeeEEEEcCCcccccCCC-HHHHHHHHH
Q 013173 246 FSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARV-SLQMIRYLALDEADRMLDMGF-EPQIRKIVQ 323 (448)
Q Consensus 246 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~-~l~~v~~lVlDEah~ll~~gf-~~~i~~i~~ 323 (448)
++...++++..++|+.....+...+..+++|+|+||++|.+++....+ .+.++++|||||||++...+. ...+..++.
T Consensus 75 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~ 154 (555)
T 3tbk_A 75 YFERLGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLD 154 (555)
T ss_dssp HHHTTTCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHH
T ss_pred HhccCCcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHH
Confidence 988788999999999987766666777799999999999999988776 789999999999999988753 232323333
Q ss_pred H-cCCCCCCCcEEEEEeccCch
Q 013173 324 Q-MDMPPPGMRQTMLFSATFPK 344 (448)
Q Consensus 324 ~-l~~~~~~~~q~i~~SAT~~~ 344 (448)
. +........|+++||||++.
T Consensus 155 ~~~~~~~~~~~~~l~lSAT~~~ 176 (555)
T 3tbk_A 155 HKLGESRDPLPQVVGLTASVGV 176 (555)
T ss_dssp HHTSSCCSCCCEEEEEESCCCC
T ss_pred hhhccccCCCCeEEEEecCccc
Confidence 2 22222356799999999943
No 44
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=2e-33 Score=314.85 Aligned_cols=246 Identities=15% Similarity=0.212 Sum_probs=202.1
Q ss_pred HCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHH
Q 013173 162 RCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHV 241 (448)
Q Consensus 162 ~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~ 241 (448)
.+||. | |+|.++||.++.|+|++++||||||||+ |++|++..+... ++++|||+||++||.|+++
T Consensus 53 ~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~~------------~~~~lil~PtreLa~Q~~~ 117 (1054)
T 1gku_B 53 CVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLALK------------GKRCYVIFPTSLLVIQAAE 117 (1054)
T ss_dssp TTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHTT------------SCCEEEEESCHHHHHHHHH
T ss_pred hcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhhc------------CCeEEEEeccHHHHHHHHH
Confidence 57999 9 9999999999999999999999999998 999999877542 3579999999999999999
Q ss_pred HHHHhcccCCc----EEEEEECCCChHHH---HHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcccccCCC
Q 013173 242 EAKKFSYQTGV----KVVVAYGGAPINQQ---LRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGF 314 (448)
Q Consensus 242 ~~~~~~~~~~~----~~~~~~gg~~~~~~---~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~gf 314 (448)
.+++++...++ ++..++|+.+...+ ...+.. ++|+|+||++|.+++.+ ++++++|||||||+|++ |
T Consensus 118 ~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~--~ 190 (1054)
T 1gku_B 118 TIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILK--A 190 (1054)
T ss_dssp HHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHT--S
T ss_pred HHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhh--c
Confidence 99999887788 89999999987764 444555 99999999999998775 67999999999999999 5
Q ss_pred HHHHHHHHHHcCCC-------CCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEecccccccCceeEEEEEecccchHHH
Q 013173 315 EPQIRKIVQQMDMP-------PPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSH 387 (448)
Q Consensus 315 ~~~i~~i~~~l~~~-------~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~ 387 (448)
..+++.++..+... .+...|+++||||++.. ..++..++.++..+.+........++.+.+. ..+|...
T Consensus 191 ~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~---~~~k~~~ 266 (1054)
T 1gku_B 191 SKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRITVRNVEDVAV---NDESIST 266 (1054)
T ss_dssp THHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEECCCCEEEEEE---SCCCTTT
T ss_pred cccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcccCcCCceEEEe---chhHHHH
Confidence 68888888877311 12457899999999888 6566666666655555555556667777655 4566677
Q ss_pred HHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCCHHH
Q 013173 388 LMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQR 442 (448)
Q Consensus 388 L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~e 442 (448)
|.+++... +.++||||+|++.|+.+++.|... +++..+||+|....
T Consensus 267 L~~ll~~~--------~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~~~~l 312 (1054)
T 1gku_B 267 LSSILEKL--------GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATKKGDY 312 (1054)
T ss_dssp THHHHTTS--------CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSSSHHH
T ss_pred HHHHHhhc--------CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccHHHHH
Confidence 77777653 467999999999999999999988 99999999996543
No 45
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=7.9e-32 Score=295.51 Aligned_cols=174 Identities=20% Similarity=0.176 Sum_probs=136.8
Q ss_pred HCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHH
Q 013173 162 RCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHV 241 (448)
Q Consensus 162 ~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~ 241 (448)
.+++.+|+|+|.++|+.++.++|++++++||+|||++|++|+++.+.... ....+++|||+||++|+.|+++
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~--------~~~~~~~Lvl~Pt~~L~~Q~~~ 314 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP--------AGRKAKVVFLATKVPVYEQQKN 314 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC--------SSCCCCEEEECSSHHHHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhcc--------ccCCCeEEEEeCCHHHHHHHHH
Confidence 35788999999999999999999999999999999999999998886532 1224579999999999999999
Q ss_pred HHHHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccc-cCCCeeEEEEcCCcccccCCCHHH-HH
Q 013173 242 EAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARV-SLQMIRYLALDEADRMLDMGFEPQ-IR 319 (448)
Q Consensus 242 ~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~-~l~~v~~lVlDEah~ll~~gf~~~-i~ 319 (448)
.+++++...++++..++|+.....+...+..+++|+|+||++|.+++....+ .+.++++|||||||++...+.... +.
T Consensus 315 ~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~ 394 (797)
T 4a2q_A 315 VFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMT 394 (797)
T ss_dssp HHHHHHGGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHH
T ss_pred HHHHhcccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHH
Confidence 9999988778999999999987777777777899999999999999988777 789999999999999988653332 22
Q ss_pred HHHHHcCCCCCCCcEEEEEeccCc
Q 013173 320 KIVQQMDMPPPGMRQTMLFSATFP 343 (448)
Q Consensus 320 ~i~~~l~~~~~~~~q~i~~SAT~~ 343 (448)
.++...........|+++||||+.
T Consensus 395 ~~~~~~~~~~~~~~~~l~lSATp~ 418 (797)
T 4a2q_A 395 RYLEQKFNSASQLPQILGLTASVG 418 (797)
T ss_dssp HHHHHHHTTCCCCCEEEEEESCCC
T ss_pred HHHHHhhccCCCCCeEEEEcCCcc
Confidence 333222112244578999999985
No 46
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=1.3e-32 Score=292.88 Aligned_cols=262 Identities=18% Similarity=0.203 Sum_probs=199.2
Q ss_pred HCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHH
Q 013173 162 RCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHV 241 (448)
Q Consensus 162 ~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~ 241 (448)
.+|+ +|+++|..++|.++.|+ |++++||+|||++|.+|++...+.. ..|+||+||++||.|+++
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~g-------------~~v~VvTpTreLA~Qdae 170 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALAG-------------NGVHIVTVNDYLAKRDSE 170 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTTT-------------SCEEEEESSHHHHHHHHH
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHhC-------------CCeEEEeCCHHHHHHHHH
Confidence 4688 99999999999999998 9999999999999999997544321 349999999999999999
Q ss_pred HHHHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHH-HHHHhcc------cccCCCeeEEEEcCCcccc-cC-
Q 013173 242 EAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRL-VDLLERA------RVSLQMIRYLALDEADRML-DM- 312 (448)
Q Consensus 242 ~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l-~~~l~~~------~~~l~~v~~lVlDEah~ll-~~- 312 (448)
.+..+...+++++.+++||.+.. .+.+..+|||+|+||++| .++|..+ .+.+..+.++||||||.|| |+
T Consensus 171 ~m~~l~~~lGLsv~~i~gg~~~~--~r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDea 248 (922)
T 1nkt_A 171 WMGRVHRFLGLQVGVILATMTPD--ERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEA 248 (922)
T ss_dssp HHHHHHHHTTCCEEECCTTCCHH--HHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGG
T ss_pred HHHHHHhhcCCeEEEEeCCCCHH--HHHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcC
Confidence 99999999999999999998853 344455799999999999 7888654 3567899999999999998 43
Q ss_pred --------------CCHHHHHHHHHHcCCC-----CCCCcEEE-----------------EEeccCch---HHHHHHH--
Q 013173 313 --------------GFEPQIRKIVQQMDMP-----PPGMRQTM-----------------LFSATFPK---EIQRLAS-- 351 (448)
Q Consensus 313 --------------gf~~~i~~i~~~l~~~-----~~~~~q~i-----------------~~SAT~~~---~v~~l~~-- 351 (448)
+|...+..|+..+... ..+.+|++ +||||++. .+...++
T Consensus 249 rtPLiiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~ 328 (922)
T 1nkt_A 249 RTPLIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAK 328 (922)
T ss_dssp GSCEEEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHH
T ss_pred ccceeecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHH
Confidence 5888999999999210 01678999 99999875 3433221
Q ss_pred hhhc-C--cE-----EEEecc-----------------------------cccccCcee---------------------
Q 013173 352 DFLA-N--YI-----FLAVGR-----------------------------VGSSTDLIV--------------------- 373 (448)
Q Consensus 352 ~~l~-~--~~-----~i~v~~-----------------------------~~~~~~~i~--------------------- 373 (448)
.++. + |+ .+.|+. ...+...|.
T Consensus 329 ~l~~~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te 408 (922)
T 1nkt_A 329 ELFSRDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTE 408 (922)
T ss_dssp HHCCBTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGG
T ss_pred HHhhcccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhH
Confidence 2222 1 11 111110 000111111
Q ss_pred --------------------------EEEEEecccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHC
Q 013173 374 --------------------------QRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN 427 (448)
Q Consensus 374 --------------------------q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~ 427 (448)
+.++++...+|...+.+.+..... .+.++||||+|++.++.|+..|...
T Consensus 409 ~~Ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~-----~gqpvLVft~Sie~sE~Ls~~L~~~ 483 (922)
T 1nkt_A 409 AAELHEIYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYA-----KGQPVLIGTTSVERSEYLSRQFTKR 483 (922)
T ss_dssp HHHHHHHHCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHH-----TTCCEEEEESCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHh-----cCCcEEEEECCHHHHHHHHHHHHHC
Confidence 123455667788888888865432 1668999999999999999999999
Q ss_pred CCCeEEecCCCCHHHHHHh
Q 013173 428 GFPATTIHGDRTQQRTSIE 446 (448)
Q Consensus 428 g~~~~~iHg~~~q~eR~~~ 446 (448)
|+++.+|||++.+.||..+
T Consensus 484 Gi~~~vLnak~~~rEa~ii 502 (922)
T 1nkt_A 484 RIPHNVLNAKYHEQEATII 502 (922)
T ss_dssp TCCCEEECSSCHHHHHHHH
T ss_pred CCCEEEecCChhHHHHHHH
Confidence 9999999999877777544
No 47
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.3e-30 Score=289.86 Aligned_cols=251 Identities=18% Similarity=0.184 Sum_probs=190.4
Q ss_pred HCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHH
Q 013173 162 RCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHV 241 (448)
Q Consensus 162 ~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~ 241 (448)
.++|. |+|+|.++|+.++.++++++++|||||||++|.++++..+.. +.++||++||++|+.|+++
T Consensus 82 ~~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~-------------g~rvL~l~PtkaLa~Q~~~ 147 (1010)
T 2xgj_A 82 TYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN-------------KQRVIYTSPIKALSNQKYR 147 (1010)
T ss_dssp CCSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHT-------------TCEEEEEESSHHHHHHHHH
T ss_pred hCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhcc-------------CCeEEEECChHHHHHHHHH
Confidence 34664 999999999999999999999999999999999999877632 2569999999999999999
Q ss_pred HHHHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcccccCCCHHHHHHH
Q 013173 242 EAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKI 321 (448)
Q Consensus 242 ~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i 321 (448)
.+.++.. ++.+++|+.... ..++|+|+||++|.+++.+....+.++++|||||||+|.++++...+..+
T Consensus 148 ~l~~~~~----~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~i 216 (1010)
T 2xgj_A 148 ELLAEFG----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEET 216 (1010)
T ss_dssp HHHHHHS----CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHH
T ss_pred HHHHHhC----CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHH
Confidence 9998754 567778877643 24799999999999999887778899999999999999999999999999
Q ss_pred HHHcCCCCCCCcEEEEEeccCchHH--HHHHHhhhcCcEEEEecccccccCceeEEEEEe---------cccc-------
Q 013173 322 VQQMDMPPPGMRQTMLFSATFPKEI--QRLASDFLANYIFLAVGRVGSSTDLIVQRVEFV---------HESD------- 383 (448)
Q Consensus 322 ~~~l~~~~~~~~q~i~~SAT~~~~v--~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~---------~~~~------- 383 (448)
+..+ +...|+|+||||+++.. ..++.....++..+..... ....+.+++... +...
T Consensus 217 l~~l----~~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~--rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (1010)
T 2xgj_A 217 IILL----PDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNF--RPTPLQHYLFPAHGDGIYLVVDEKSTFREENF 290 (1010)
T ss_dssp HHHS----CTTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECC--CSSCEEEEEEETTSSCCEEEECTTCCBCHHHH
T ss_pred HHhc----CCCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCC--CcccceEEEEecCCcceeeeeccccccchHHH
Confidence 9988 67889999999998643 3444444455655544322 122233333221 1000
Q ss_pred ----------------------------h--------HHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHC
Q 013173 384 ----------------------------K--------RSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN 427 (448)
Q Consensus 384 ----------------------------k--------~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~ 427 (448)
| ...+..++...... ...++||||+++..|+.++..|...
T Consensus 291 ~~~~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~----~~~~~IVF~~sr~~~e~la~~L~~~ 366 (1010)
T 2xgj_A 291 QKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKK----KYNPVIVFSFSKRDCEELALKMSKL 366 (1010)
T ss_dssp HHHHHTCC------------------------------CHHHHHHHHHHHH----TCCSEEEEESSHHHHHHHHHTTTTS
T ss_pred HHHHHHHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHhc----CCCCEEEEECCHHHHHHHHHHHHhC
Confidence 0 11122233322211 1458999999999999999999776
Q ss_pred CCC---------------------------------------eEEecCCCCHHHHHHhh
Q 013173 428 GFP---------------------------------------ATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 428 g~~---------------------------------------~~~iHg~~~q~eR~~~l 447 (448)
++. +..+||+|++.+|+.++
T Consensus 367 ~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve 425 (1010)
T 2xgj_A 367 DFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIE 425 (1010)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHH
Confidence 553 78899999999999875
No 48
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.97 E-value=4.3e-31 Score=293.35 Aligned_cols=176 Identities=20% Similarity=0.173 Sum_probs=135.1
Q ss_pred HHHCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHH
Q 013173 160 IRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQI 239 (448)
Q Consensus 160 l~~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi 239 (448)
..-.++.+|+|+|.++|+.++.|+|++++++||+|||++|++|+++.+.... ....+++|||+||++|+.|+
T Consensus 241 ~~l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~--------~~~~~~vLvl~Pt~~L~~Q~ 312 (936)
T 4a2w_A 241 PPVYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP--------AGRKAKVVFLATKVPVYEQQ 312 (936)
T ss_dssp -------CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCC--------SSCCCCEEEECSSHHHHHHH
T ss_pred ccccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhcc--------ccCCCeEEEEeCCHHHHHHH
Confidence 3344788999999999999999999999999999999999999998775432 12245699999999999999
Q ss_pred HHHHHHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccc-cCCCeeEEEEcCCcccccCCC-HHH
Q 013173 240 HVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARV-SLQMIRYLALDEADRMLDMGF-EPQ 317 (448)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~-~l~~v~~lVlDEah~ll~~gf-~~~ 317 (448)
+++++++....++++..++|+.....+...+..+++|+|+||++|.+++....+ .+.++++|||||||++...+. ...
T Consensus 313 ~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i 392 (936)
T 4a2w_A 313 KNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVL 392 (936)
T ss_dssp HHHHHHHHHTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHH
T ss_pred HHHHHHHhcccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHH
Confidence 999999988778999999999877766666666799999999999999988776 788999999999999987653 222
Q ss_pred HHHHHHHcCCCCCCCcEEEEEeccCc
Q 013173 318 IRKIVQQMDMPPPGMRQTMLFSATFP 343 (448)
Q Consensus 318 i~~i~~~l~~~~~~~~q~i~~SAT~~ 343 (448)
+..++...........|+++||||+.
T Consensus 393 ~~~~~~~~~~~~~~~~~~l~LSATp~ 418 (936)
T 4a2w_A 393 MTRYLEQKFNSASQLPQILGLTASVG 418 (936)
T ss_dssp HHHHHHHHHTTCSCCCEEEEEESCCC
T ss_pred HHHHHHHhhccCCCcCeEEEecCCcc
Confidence 32333322111244578999999984
No 49
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.97 E-value=1.1e-30 Score=290.50 Aligned_cols=156 Identities=21% Similarity=0.264 Sum_probs=135.8
Q ss_pred CCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q 013173 164 KYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEA 243 (448)
Q Consensus 164 ~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~ 243 (448)
+| +|+|+|.++|+.++.++|+++++|||||||++|+++++..+.. ++++||++||++|+.|+++.+
T Consensus 37 ~f-~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~-------------g~~vlvl~PtraLa~Q~~~~l 102 (997)
T 4a4z_A 37 PF-ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRN-------------MTKTIYTSPIKALSNQKFRDF 102 (997)
T ss_dssp SS-CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHT-------------TCEEEEEESCGGGHHHHHHHH
T ss_pred CC-CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhc-------------CCeEEEEeCCHHHHHHHHHHH
Confidence 44 5899999999999999999999999999999999998875422 356999999999999999999
Q ss_pred HHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcccccCCCHHHHHHHHH
Q 013173 244 KKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQ 323 (448)
Q Consensus 244 ~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~ 323 (448)
+++.. ++++..++|+.... ..++|+|+||++|.+++......+.++++|||||||++.+++|...+..++.
T Consensus 103 ~~~~~--~~~v~~l~G~~~~~-------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~ 173 (997)
T 4a4z_A 103 KETFD--DVNIGLITGDVQIN-------PDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVII 173 (997)
T ss_dssp HTTC----CCEEEECSSCEEC-------TTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHH
T ss_pred HHHcC--CCeEEEEeCCCccC-------CCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHH
Confidence 98643 57888888887543 3479999999999999988877789999999999999999999999999999
Q ss_pred HcCCCCCCCcEEEEEeccCchHH
Q 013173 324 QMDMPPPGMRQTMLFSATFPKEI 346 (448)
Q Consensus 324 ~l~~~~~~~~q~i~~SAT~~~~v 346 (448)
.+ +...|+|+||||+++..
T Consensus 174 ~l----~~~v~iIlLSAT~~n~~ 192 (997)
T 4a4z_A 174 ML----PQHVKFILLSATVPNTY 192 (997)
T ss_dssp HS----CTTCEEEEEECCCTTHH
T ss_pred hc----ccCCCEEEEcCCCCChH
Confidence 98 77899999999997553
No 50
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.97 E-value=5.4e-29 Score=255.61 Aligned_cols=169 Identities=19% Similarity=0.177 Sum_probs=136.2
Q ss_pred CCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013173 167 KPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF 246 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~ 246 (448)
+|+|+|.++++.++.+ +++++++||+|||++++++++..+.. ...++|||+|+++|+.|+.++++++
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~------------~~~~~liv~P~~~L~~q~~~~~~~~ 75 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK------------YGGKVLMLAPTKPLVLQHAESFRRL 75 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH------------SCSCEEEECSSHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc------------CCCeEEEEECCHHHHHHHHHHHHHH
Confidence 6999999999999988 99999999999999999999887651 1245999999999999999999998
Q ss_pred cccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcccccCCCHHHHHHHHHHcC
Q 013173 247 SYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMD 326 (448)
Q Consensus 247 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~ 326 (448)
......++..++|+.........+ ..++|+|+||+.|.+.+....+.+.++++|||||||++........+...+...
T Consensus 76 ~~~~~~~v~~~~g~~~~~~~~~~~-~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~- 153 (494)
T 1wp9_A 76 FNLPPEKIVALTGEKSPEERSKAW-ARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQ- 153 (494)
T ss_dssp BCSCGGGEEEECSCSCHHHHHHHH-HHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHH-
T ss_pred hCcchhheEEeeCCcchhhhhhhc-cCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhc-
Confidence 755556888888888766544333 357999999999999998887889999999999999998765445555555554
Q ss_pred CCCCCCcEEEEEeccCch---HHHHHHHhh
Q 013173 327 MPPPGMRQTMLFSATFPK---EIQRLASDF 353 (448)
Q Consensus 327 ~~~~~~~q~i~~SAT~~~---~v~~l~~~~ 353 (448)
....++++||||+.. ++..++..+
T Consensus 154 ---~~~~~~l~lTaTp~~~~~~~~~l~~~l 180 (494)
T 1wp9_A 154 ---AKNPLVIGLTASPGSTPEKIMEVINNL 180 (494)
T ss_dssp ---CSSCCEEEEESCSCSSHHHHHHHHHHT
T ss_pred ---CCCCeEEEEecCCCCCcHHHHHHHHhc
Confidence 445779999999963 444555443
No 51
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.97 E-value=1.5e-29 Score=293.18 Aligned_cols=278 Identities=15% Similarity=0.161 Sum_probs=196.6
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHhHHhhHhC-CCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEc
Q 013173 152 LGEALNLNIRRCKYVKPTPVQRHAIPISIG-GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILA 230 (448)
Q Consensus 152 L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~-g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~ 230 (448)
|.+...+++...+|..|+|+|.++++.++. ++|++++||||||||++|.+|+++.+.+.. +.++|||+
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~-----------~~kavyi~ 979 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSS-----------EGRCVYIT 979 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCT-----------TCCEEEEC
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCC-----------CCEEEEEc
Confidence 567788888888999999999999999874 678999999999999999999999887542 23599999
Q ss_pred CcHHHHHHHHHHHHH-hcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhccc--ccCCCeeEEEEcCCc
Q 013173 231 PTRELSSQIHVEAKK-FSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERAR--VSLQMIRYLALDEAD 307 (448)
Q Consensus 231 PtreL~~qi~~~~~~-~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~--~~l~~v~~lVlDEah 307 (448)
||++||.|+++.+++ |....++++..++|+..... +. ...++|+||||++|..++.+.. ..+++|++||+||+|
T Consensus 980 P~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~--~~-~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H 1056 (1724)
T 4f92_B 980 PMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDL--KL-LGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVH 1056 (1724)
T ss_dssp SCHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHH--HH-HHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGG
T ss_pred ChHHHHHHHHHHHHHHhchhcCCEEEEEECCCCcch--hh-cCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechh
Confidence 999999999999965 66778899999888765332 22 2347999999999988876543 347899999999999
Q ss_pred ccccCCCHHHHHHHHHHcC---CCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEecccccccCceeEEEEEecccch
Q 013173 308 RMLDMGFEPQIRKIVQQMD---MPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDK 384 (448)
Q Consensus 308 ~ll~~gf~~~i~~i~~~l~---~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~~k 384 (448)
+|.+. ....+..++..+. ...+...|+|+||||+++ ..+++..+-.+...+...........+..++...+....
T Consensus 1057 ~l~d~-rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N-~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~ 1134 (1724)
T 4f92_B 1057 LIGGE-NGPVLEVICSRMRYISSQIERPIRIVALSSSLSN-AKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHT 1134 (1724)
T ss_dssp GGGST-THHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTT-HHHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSH
T ss_pred hcCCC-CCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCC-HHHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCc
Confidence 88774 5666666655442 122567899999999975 455555543332222222222222334444444443333
Q ss_pred HHHHHHH---HHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHC----------------------------------
Q 013173 385 RSHLMDL---LHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN---------------------------------- 427 (448)
Q Consensus 385 ~~~L~~l---l~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~---------------------------------- 427 (448)
...+..+ +...... .....++||||+|++.|+.++..|...
T Consensus 1135 ~~~~~~~~~~~~~~i~~--~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l 1212 (1724)
T 4f92_B 1135 QTRLLSMAKPVYHAITK--HSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETL 1212 (1724)
T ss_dssp HHHHHTTHHHHHHHHHH--HCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHH
T ss_pred hhhhhhhcchHHHHHHH--hcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHH
Confidence 2222211 1111111 123678999999999999988776421
Q ss_pred CCCeEEecCCCCHHHHHHhh
Q 013173 428 GFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 428 g~~~~~iHg~~~q~eR~~~l 447 (448)
..-+..+|++|++.+|+.+.
T Consensus 1213 ~~GIa~hHagL~~~~R~~VE 1232 (1724)
T 4f92_B 1213 LNGVGYLHEGLSPMERRLVE 1232 (1724)
T ss_dssp HTTEEEECTTSCHHHHHHHH
T ss_pred hCCEEEECCCCCHHHHHHHH
Confidence 12478899999999998763
No 52
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.97 E-value=3.1e-29 Score=290.55 Aligned_cols=272 Identities=17% Similarity=0.189 Sum_probs=191.1
Q ss_pred CCCCCCHHHHhHHhhHh-CCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 013173 164 KYVKPTPVQRHAIPISI-GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVE 242 (448)
Q Consensus 164 ~~~~pt~~Q~~~i~~i~-~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~ 242 (448)
||++++++|.+++|.++ .++|+++|||||||||++|.+++++.+.+..... ......+.++|||+|+++||.|+++.
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~--~~~~~~~~k~lyiaP~kALa~e~~~~ 153 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMD--GTINVDDFKIIYIAPMRSLVQEMVGS 153 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTT--SSCCTTSCEEEEECSSHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhcccc--ccccCCCCEEEEECCHHHHHHHHHHH
Confidence 79999999999999887 5889999999999999999999999997653221 11223466899999999999999999
Q ss_pred HHHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhccc--ccCCCeeEEEEcCCcccccCCCHHHHHH
Q 013173 243 AKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERAR--VSLQMIRYLALDEADRMLDMGFEPQIRK 320 (448)
Q Consensus 243 ~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~--~~l~~v~~lVlDEah~ll~~gf~~~i~~ 320 (448)
+++.....+++|..++|+...... ....++|+|+||+++..++.+.. ..++.|++|||||+|.+-+ .....++.
T Consensus 154 l~~~~~~~gi~V~~~tGd~~~~~~---~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~ 229 (1724)
T 4f92_B 154 FGKRLATYGITVAELTGDHQLCKE---EISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEA 229 (1724)
T ss_dssp HHHHHTTTTCCEEECCSSCSSCCT---TGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHH
T ss_pred HHHHHhhCCCEEEEEECCCCCCcc---ccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHH
Confidence 998877889999999998875432 12358999999999876665532 2378999999999997765 56666666
Q ss_pred HHHHcCC---CCCCCcEEEEEeccCchHHHHHHHhhhcCc---EEEEecccccccCceeEEEEEecccch---HHHHHHH
Q 013173 321 IVQQMDM---PPPGMRQTMLFSATFPKEIQRLASDFLANY---IFLAVGRVGSSTDLIVQRVEFVHESDK---RSHLMDL 391 (448)
Q Consensus 321 i~~~l~~---~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~---~~i~v~~~~~~~~~i~q~~~~~~~~~k---~~~L~~l 391 (448)
++.++.. ..+...|+|++|||+|+ ..+++..+-.++ .++ +. ...-+..+.+.+..+..... ...+.+.
T Consensus 230 ~l~rl~~~~~~~~~~~riI~LSATl~N-~~dvA~wL~~~~~~~~~~-~~-~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~ 306 (1724)
T 4f92_B 230 LVARAIRNIEMTQEDVRLIGLSATLPN-YEDVATFLRVDPAKGLFY-FD-NSFRPVPLEQTYVGITEKKAIKRFQIMNEI 306 (1724)
T ss_dssp HHHHHHHHHHHHTCCCEEEEEECSCTT-HHHHHHHTTCCHHHHEEE-CC-GGGCSSCEEEECCEECCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCcEEEEecccCC-HHHHHHHhCCCCCCCeEE-EC-CCCccCccEEEEeccCCcchhhhhHHHHHH
Confidence 5543210 01456899999999985 455554332221 222 11 11112234555554443322 2223333
Q ss_pred HHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHC-------------------------------------CCCeEEe
Q 013173 392 LHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN-------------------------------------GFPATTI 434 (448)
Q Consensus 392 l~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~-------------------------------------g~~~~~i 434 (448)
+....... ..++++||||+|++.|+.++..|... ..-+..+
T Consensus 307 ~~~~v~~~--~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~H 384 (1724)
T 4f92_B 307 VYEKIMEH--AGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIH 384 (1724)
T ss_dssp HHHHHTTC--CSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEE
T ss_pred HHHHHHHH--hcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEE
Confidence 33322222 23568999999999999999888531 1237789
Q ss_pred cCCCCHHHHHHh
Q 013173 435 HGDRTQQRTSIE 446 (448)
Q Consensus 435 Hg~~~q~eR~~~ 446 (448)
||+|++.+|..+
T Consensus 385 HagL~~~~R~~v 396 (1724)
T 4f92_B 385 HAGMTRVDRTLV 396 (1724)
T ss_dssp CSSSCTHHHHHH
T ss_pred cCCCCHHHHHHH
Confidence 999999999875
No 53
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.96 E-value=3.5e-30 Score=278.64 Aligned_cols=171 Identities=19% Similarity=0.274 Sum_probs=129.2
Q ss_pred CCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHH-HHHHH
Q 013173 166 VKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQI-HVEAK 244 (448)
Q Consensus 166 ~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi-~~~~~ 244 (448)
.+|+|+|.++|+.++.++|++++++||+|||++|++|++..+...... ....++|||+||++|+.|+ +++++
T Consensus 6 ~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~-------~~~~~vlvl~P~~~L~~Q~~~~~l~ 78 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKA-------SEPGKVIVLVNKVLLVEQLFRKEFQ 78 (699)
T ss_dssp -CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHH-------TCCCCBCCEESCSHHHHHHHHHTHH
T ss_pred CCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccc-------CCCCeEEEEECCHHHHHHHHHHHHH
Confidence 379999999999999999999999999999999999999888765321 1224599999999999999 99999
Q ss_pred HhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHH------hcccccCCCeeEEEEcCCcccccCC-CHHH
Q 013173 245 KFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLL------ERARVSLQMIRYLALDEADRMLDMG-FEPQ 317 (448)
Q Consensus 245 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l------~~~~~~l~~v~~lVlDEah~ll~~g-f~~~ 317 (448)
++... ++++..++|+.....+...+...++|+|+||++|.+.+ ....+.+..+++|||||||++...+ +...
T Consensus 79 ~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i 157 (699)
T 4gl2_A 79 PFLKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNI 157 (699)
T ss_dssp HHHTT-TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSH
T ss_pred HHcCc-CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHH
Confidence 98754 48899999988776666666678999999999999988 4445678899999999999986644 2222
Q ss_pred HHHHHHHc---------CCCCCCCcEEEEEeccCch
Q 013173 318 IRKIVQQM---------DMPPPGMRQTMLFSATFPK 344 (448)
Q Consensus 318 i~~i~~~l---------~~~~~~~~q~i~~SAT~~~ 344 (448)
+..++... .....+..|+|+||||+..
T Consensus 158 ~~~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~ 193 (699)
T 4gl2_A 158 MRHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGV 193 (699)
T ss_dssp HHHHHHHHHHHHHHHC----CCCCCEEEEECSCCCC
T ss_pred HHHHHHhhhcccccccccccCCCCCEEEEecccccc
Confidence 32222211 0111245689999999986
No 54
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.96 E-value=6.7e-28 Score=271.81 Aligned_cols=258 Identities=16% Similarity=0.137 Sum_probs=191.5
Q ss_pred CCCHHHHHHHH-HCCCCCCCHHHHhHHhhHhC----CC--CeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCC
Q 013173 151 DLGEALNLNIR-RCKYVKPTPVQRHAIPISIG----GR--DLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVY 223 (448)
Q Consensus 151 ~L~~~l~~~l~-~~~~~~pt~~Q~~~i~~i~~----g~--d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~ 223 (448)
.++..+.+.+. .++| +|||+|.++|+.++. ++ |++++++||+|||++|+++++..+.. +
T Consensus 587 ~~~~~~~~~~~~~f~~-~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~-------------g 652 (1151)
T 2eyq_A 587 KHDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN-------------H 652 (1151)
T ss_dssp CCCHHHHHHHHHTCCS-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT-------------T
T ss_pred CCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh-------------C
Confidence 45555555554 4566 479999999998875 66 99999999999999999998875532 3
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHH---HHHHhcC-ccEEEeChHHHHHHHhcccccCCCee
Q 013173 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQ---LRELERG-VDILVATPGRLVDLLERARVSLQMIR 299 (448)
Q Consensus 224 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~---~~~l~~~-~~Ilv~Tp~~l~~~l~~~~~~l~~v~ 299 (448)
.++|||+||++|+.|+++.++++....++++..+.+....... ...+..+ ++|+|+||+.|. ..+.+++++
T Consensus 653 ~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~l~ 727 (1151)
T 2eyq_A 653 KQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLG 727 (1151)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEE
T ss_pred CeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCccccccc
Confidence 4799999999999999999998877778888888877665544 3344454 999999997653 345689999
Q ss_pred EEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEecccccccCceeEEEEEe
Q 013173 300 YLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFV 379 (448)
Q Consensus 300 ~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~ 379 (448)
+|||||||++ ......++..+ +...++++||||+.+....++...+.++..+.... .....+..++...
T Consensus 728 lvIiDEaH~~-----g~~~~~~l~~l----~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~--~~r~~i~~~~~~~ 796 (1151)
T 2eyq_A 728 LLIVDEEHRF-----GVRHKERIKAM----RANVDILTLTATPIPRTLNMAMSGMRDLSIIATPP--ARRLAVKTFVREY 796 (1151)
T ss_dssp EEEEESGGGS-----CHHHHHHHHHH----HTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCCC--CBCBCEEEEEEEC
T ss_pred eEEEechHhc-----ChHHHHHHHHh----cCCCCEEEEcCCCChhhHHHHHhcCCCceEEecCC--CCccccEEEEecC
Confidence 9999999995 23455666666 45689999999998877777776666654443221 1122333333322
Q ss_pred cccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHC--CCCeEEecCCCCHHHHHHhh
Q 013173 380 HESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN--GFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 380 ~~~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~--g~~~~~iHg~~~q~eR~~~l 447 (448)
.+......++.... .+++++|||++++.|+.+++.|... ++.+..+||+|++.+|++++
T Consensus 797 ---~~~~i~~~il~~l~------~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il 857 (1151)
T 2eyq_A 797 ---DSMVVREAILREIL------RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVM 857 (1151)
T ss_dssp ---CHHHHHHHHHHHHT------TTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHh------cCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHH
Confidence 22222333333322 2678999999999999999999887 88999999999999999876
No 55
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.95 E-value=2.9e-28 Score=263.52 Aligned_cols=256 Identities=16% Similarity=0.191 Sum_probs=182.1
Q ss_pred HHHHHHHHHCCCCCCCHHHHhHHhhHhCC------CCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEE
Q 013173 154 EALNLNIRRCKYVKPTPVQRHAIPISIGG------RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLAL 227 (448)
Q Consensus 154 ~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g------~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~l 227 (448)
+.+.+.+..++| +||++|+++|+.++.+ +|++++++||||||++|++|++..+.. +.++|
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~-------------g~qvl 421 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA-------------GFQTA 421 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH-------------TSCEE
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc-------------CCeEE
Confidence 445555678899 9999999999988765 699999999999999999999987743 24699
Q ss_pred EEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHH---HHHhcC-ccEEEeChHHHHHHHhcccccCCCeeEEEE
Q 013173 228 ILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQL---RELERG-VDILVATPGRLVDLLERARVSLQMIRYLAL 303 (448)
Q Consensus 228 il~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~---~~l~~~-~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVl 303 (448)
||+||++||.|+++.++++....++++..++|+....... ..+..+ ++|+|+||+.|.+ .+.+.++++|||
T Consensus 422 vlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVI 496 (780)
T 1gm5_A 422 FMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVII 496 (780)
T ss_dssp EECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEE
T ss_pred EEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEe
Confidence 9999999999999999999888889999999998876543 344454 8999999998754 456899999999
Q ss_pred cCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEecccccccCceeEEEEEecccc
Q 013173 304 DEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESD 383 (448)
Q Consensus 304 DEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~~ 383 (448)
||+|++.. .. +. .+... ....|+++||||+.+....+.. ..+.....+.........+.. .+....
T Consensus 497 DEaHr~g~---~q--r~---~l~~~-~~~~~vL~mSATp~p~tl~~~~--~g~~~~s~i~~~p~~r~~i~~---~~~~~~ 562 (780)
T 1gm5_A 497 DEQHRFGV---KQ--RE---ALMNK-GKMVDTLVMSATPIPRSMALAF--YGDLDVTVIDEMPPGRKEVQT---MLVPMD 562 (780)
T ss_dssp ESCCCC----------C---CCCSS-SSCCCEEEEESSCCCHHHHHHH--TCCSSCEEECCCCSSCCCCEE---CCCCSS
T ss_pred cccchhhH---HH--HH---HHHHh-CCCCCEEEEeCCCCHHHHHHHH--hCCcceeeeeccCCCCcceEE---EEeccc
Confidence 99998632 11 11 11111 2357899999998766544332 222211111111111122222 122334
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCcEEEEeCch--------hhHHHHHHHHHH---CCCCeEEecCCCCHHHHHHhh
Q 013173 384 KRSHLMDLLHAQVANGVHGKQALTLVFVETK--------KGADALEHWLYM---NGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 384 k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~--------~~a~~l~~~L~~---~g~~~~~iHg~~~q~eR~~~l 447 (448)
+...+.+.+..... .+.+++|||+++ ..|+.+++.|.. .++.+..+||+|++.+|++++
T Consensus 563 ~~~~l~~~i~~~l~-----~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~ 632 (780)
T 1gm5_A 563 RVNEVYEFVRQEVM-----RGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVM 632 (780)
T ss_dssp THHHHHHHHHHHTT-----TSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHH
T ss_pred hHHHHHHHHHHHHh-----cCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHH
Confidence 55566666665432 267899999976 457889999988 478999999999999998875
No 56
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.95 E-value=1.8e-29 Score=267.94 Aligned_cols=240 Identities=16% Similarity=0.138 Sum_probs=167.1
Q ss_pred CCCCHHHHHHHHHCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEE
Q 013173 150 IDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALIL 229 (448)
Q Consensus 150 l~L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil 229 (448)
+.+++.+.+.+... +.+|+|+|++++|.+++++|++++|+||||||++|++|+++.+... ++++|||
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~------------~~~vLvl 221 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKR------------RLRTLIL 221 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT------------TCCEEEE
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhC------------CCeEEEE
Confidence 45666666555543 5789999999999999999999999999999999999999988652 2569999
Q ss_pred cCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCccc
Q 013173 230 APTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRM 309 (448)
Q Consensus 230 ~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~l 309 (448)
+|||+||.|+++.++.+ .+. +.+... . .....+..+.++|.+.|...+... ..+.++++|||||||++
T Consensus 222 ~PtreLa~Qi~~~l~~~------~v~-~~~~~l-~---~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~ 289 (618)
T 2whx_A 222 APTRVVAAEMEEALRGL------PIR-YQTPAV-K---SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT 289 (618)
T ss_dssp ESSHHHHHHHHHHTTTS------CEE-ECCTTS-S---CCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC
T ss_pred cChHHHHHHHHHHhcCC------cee-Eecccc-e---eccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC
Confidence 99999999999988743 222 111110 0 001112456677888877666544 35899999999999998
Q ss_pred ccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEecccccccCceeEEEEEecccchHHHHH
Q 013173 310 LDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLM 389 (448)
Q Consensus 310 l~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~ 389 (448)
+++|...+..|+..+. ...+|+|+||||++..+..++. .++..+.+... ++. .+...++
T Consensus 290 -~~~~~~~~~~i~~~l~---~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~-------------~~~-~~~~~ll 348 (618)
T 2whx_A 290 -DPCSVAARGYISTRVE---MGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIERE-------------IPE-RSWNTGF 348 (618)
T ss_dssp -SHHHHHHHHHHHHHHH---HTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECC-------------CCS-SCCSSSC
T ss_pred -CccHHHHHHHHHHHhc---ccCccEEEEECCCchhhhhhhc---cCCceeeeccc-------------CCH-HHHHHHH
Confidence 7778888888888772 2568999999999887553322 13333222211 011 1112233
Q ss_pred HHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCCHHHHHHhh
Q 013173 390 DLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 390 ~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
..+... ..++||||+|++.|+.+++.|...++++..+||+ +|++++
T Consensus 349 ~~l~~~--------~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l 394 (618)
T 2whx_A 349 DWITDY--------QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEY 394 (618)
T ss_dssp HHHHHC--------CSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHT
T ss_pred HHHHhC--------CCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHH
Confidence 333332 5679999999999999999999999999999995 555543
No 57
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.95 E-value=4.2e-28 Score=252.96 Aligned_cols=251 Identities=13% Similarity=0.092 Sum_probs=179.9
Q ss_pred CCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013173 166 VKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK 245 (448)
Q Consensus 166 ~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~ 245 (448)
.+|+|+|.++|+.++.+++++++++||+|||++|+++++..+... .+++|||+||++|+.|+++.+++
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~------------~~~vlvl~P~~~L~~Q~~~~~~~ 179 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY------------EGKILIIVPTTALTTQMADDFVD 179 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHC------------SSEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCC------------CCeEEEEECcHHHHHHHHHHHHH
Confidence 489999999999999999999999999999999999888766421 13699999999999999999999
Q ss_pred hcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcccccCCCHHHHHHHHHHc
Q 013173 246 FSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQM 325 (448)
Q Consensus 246 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l 325 (448)
+....++++..++++.....+ +...++|+|+||+.|.. .....+.++++|||||||++.. ..+..++..+
T Consensus 180 ~~~~~~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~---~~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~ 249 (510)
T 2oca_A 180 YRLFSHAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVK---QPKEWFSQFGMMMNDECHLATG----KSISSIISGL 249 (510)
T ss_dssp TTSSCGGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTT---SCGGGGGGEEEEEEETGGGCCH----HHHHHHGGGC
T ss_pred hhcCCccceEEEecCCccccc---cccCCcEEEEeHHHHhh---chhhhhhcCCEEEEECCcCCCc----ccHHHHHHhc
Confidence 877667788888888775543 44568999999997653 2335578899999999999876 5677777777
Q ss_pred CCCCCCCcEEEEEeccCchHHHHHHH-hhhcCcEEEEeccccc------ccCceeEEEEEec------------------
Q 013173 326 DMPPPGMRQTMLFSATFPKEIQRLAS-DFLANYIFLAVGRVGS------STDLIVQRVEFVH------------------ 380 (448)
Q Consensus 326 ~~~~~~~~q~i~~SAT~~~~v~~l~~-~~l~~~~~i~v~~~~~------~~~~i~q~~~~~~------------------ 380 (448)
....++++||||++.....+.. ..+.++..+.+..... ....+........
T Consensus 250 ----~~~~~~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (510)
T 2oca_A 250 ----NNCMFKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKI 325 (510)
T ss_dssp ----TTCCEEEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHH
T ss_pred ----ccCcEEEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHH
Confidence 5567899999999776533221 1222333322211100 0011111111111
Q ss_pred ---ccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCCHHHHHHhh
Q 013173 381 ---ESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 381 ---~~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
...+...+.+++...... ...++||||+ +++|+.|++.|...+.++..+||++++.+|++++
T Consensus 326 ~~~~~~~~~~l~~~l~~~~~~----~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~ 390 (510)
T 2oca_A 326 ITGLSKRNKWIAKLAIKLAQK----DENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMK 390 (510)
T ss_dssp HHTCHHHHHHHHHHHHHHHTT----TCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHhc----CCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHH
Confidence 112333445555544321 1455677777 8899999999999988999999999999999875
No 58
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.95 E-value=3.3e-28 Score=249.97 Aligned_cols=223 Identities=15% Similarity=0.123 Sum_probs=156.4
Q ss_pred CCCCCCHHHHhHHhhHhCCCCe-eEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 013173 164 KYVKPTPVQRHAIPISIGGRDL-MACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVE 242 (448)
Q Consensus 164 ~~~~pt~~Q~~~i~~i~~g~d~-lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~ 242 (448)
|+..|+|+|+ +||.++.++|+ ++++|||||||++|++|++..+... ++++||++|||+||.|+++.
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~------------~~~~lvl~Ptr~La~Q~~~~ 67 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLR------------RLRTLILAPTRVVAAEMEEA 67 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHT------------TCCEEEEESSHHHHHHHHHH
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhc------------CCcEEEECCCHHHHHHHHHH
Confidence 6788999985 79999998887 9999999999999999999877642 25699999999999999998
Q ss_pred HHHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcccccCCCHHHHHHHH
Q 013173 243 AKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIV 322 (448)
Q Consensus 243 ~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~ 322 (448)
+..+ .+......... ....+..|.++|++.|.+.+... ..+.++++|||||||++ +.++...+..+.
T Consensus 68 l~g~------~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~~~ 134 (451)
T 2jlq_A 68 LRGL------PIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYIS 134 (451)
T ss_dssp TTTS------CEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SHHHHHHHHHHH
T ss_pred hcCc------eeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-CcchHHHHHHHH
Confidence 8643 22211111100 11224579999999998888654 45889999999999977 444444333333
Q ss_pred HHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEecccccccCceeEEEEEecccchHHHHHHHHHHHHhcCCCC
Q 013173 323 QQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHG 402 (448)
Q Consensus 323 ~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~~~ 402 (448)
.... ....|+++||||++..+..+ +..++..+.+... .+. .....+.+.+...
T Consensus 135 ~~~~---~~~~~~i~~SAT~~~~~~~~---~~~~~~~~~~~~~---~p~-----------~~~~~~~~~l~~~------- 187 (451)
T 2jlq_A 135 TRVE---MGEAAAIFMTATPPGSTDPF---PQSNSPIEDIERE---IPE-----------RSWNTGFDWITDY------- 187 (451)
T ss_dssp HHHH---TTSCEEEEECSSCTTCCCSS---CCCSSCEEEEECC---CCS-----------SCCSSSCHHHHHC-------
T ss_pred Hhhc---CCCceEEEEccCCCccchhh---hcCCCceEecCcc---CCc-----------hhhHHHHHHHHhC-------
Confidence 3321 44689999999998765432 2233333333211 000 0001122333332
Q ss_pred CCCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCCH
Q 013173 403 KQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQ 440 (448)
Q Consensus 403 ~~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q 440 (448)
.+++||||+|++.|+.+++.|...++.+..+|+++.+
T Consensus 188 -~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~ 224 (451)
T 2jlq_A 188 -QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTFD 224 (451)
T ss_dssp -CSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTHH
T ss_pred -CCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHHHH
Confidence 5689999999999999999999999999999998764
No 59
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.95 E-value=1.2e-26 Score=252.09 Aligned_cols=274 Identities=14% Similarity=0.125 Sum_probs=187.5
Q ss_pred ccCCCcccCCCCHHHHHHHHHCCCCCCCHHHHhHHhhHh-CCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCC
Q 013173 142 PAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISI-GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSR 220 (448)
Q Consensus 142 ~~~~~f~~l~L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~-~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~ 220 (448)
.++.+|.+++|++.+.+.+...+ ..|+++|+.+|+.++ .++++++++|||||||+ ++|++. ...... .
T Consensus 69 ~~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll--~~~~~~------~ 137 (773)
T 2xau_A 69 GKINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFV--LFDEMP------H 137 (773)
T ss_dssp SSBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHH--HHHHCG------G
T ss_pred CCCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHH--HHhccc------c
Confidence 35678999999999999999877 789999999998877 56789999999999999 577662 221110 1
Q ss_pred CCCceEEEEcCcHHHHHHHHHHHHHhc-ccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCee
Q 013173 221 TVYPLALILAPTRELSSQIHVEAKKFS-YQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIR 299 (448)
Q Consensus 221 ~~~~~~lil~PtreL~~qi~~~~~~~~-~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~ 299 (448)
..+++++|++|+++|+.|+++.+.... ...+..+........ ......+|+|+|||+|.+.+... ..+.+++
T Consensus 138 ~~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~------~~~~~~~I~v~T~G~l~r~l~~~-~~l~~~~ 210 (773)
T 2xau_A 138 LENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFEN------KTSNKTILKYMTDGMLLREAMED-HDLSRYS 210 (773)
T ss_dssp GGTCEEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEE------ECCTTCSEEEEEHHHHHHHHHHS-TTCTTEE
T ss_pred CCCceEEecCchHHHHHHHHHHHHHHhCCchhheecceecccc------ccCCCCCEEEECHHHHHHHHhhC-ccccCCC
Confidence 124579999999999999988775543 222222221111100 01235789999999999887664 3589999
Q ss_pred EEEEcCCcc-cccCCC-HHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEecccccccCceeEEEE
Q 013173 300 YLALDEADR-MLDMGF-EPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVE 377 (448)
Q Consensus 300 ~lVlDEah~-ll~~gf-~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~ 377 (448)
+|||||+|. +++..+ ...+..+.... +..|+++||||++.+ .+. .++.+...+.+.. ....+.++|.
T Consensus 211 ~lIlDEah~R~ld~d~~~~~l~~l~~~~-----~~~~iIl~SAT~~~~--~l~-~~~~~~~vi~v~g---r~~pv~~~~~ 279 (773)
T 2xau_A 211 CIILDEAHERTLATDILMGLLKQVVKRR-----PDLKIIIMSATLDAE--KFQ-RYFNDAPLLAVPG---RTYPVELYYT 279 (773)
T ss_dssp EEEECSGGGCCHHHHHHHHHHHHHHHHC-----TTCEEEEEESCSCCH--HHH-HHTTSCCEEECCC---CCCCEEEECC
T ss_pred EEEecCccccccchHHHHHHHHHHHHhC-----CCceEEEEeccccHH--HHH-HHhcCCCcccccC---cccceEEEEe
Confidence 999999995 666332 22334444332 367999999999643 333 4454433343321 1234555554
Q ss_pred EecccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHH-----------CCCCeEEecCCCCHHHHHHh
Q 013173 378 FVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYM-----------NGFPATTIHGDRTQQRTSIE 446 (448)
Q Consensus 378 ~~~~~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~-----------~g~~~~~iHg~~~q~eR~~~ 446 (448)
.....++...++..+....... ..+++||||+++++|+.+++.|.. .++.+..+||+|++++|.++
T Consensus 280 ~~~~~~~~~~~l~~l~~~~~~~---~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v 356 (773)
T 2xau_A 280 PEFQRDYLDSAIRTVLQIHATE---EAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRI 356 (773)
T ss_dssp SSCCSCHHHHHHHHHHHHHHHS---CSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGG
T ss_pred cCCchhHHHHHHHHHHHHHHhc---CCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHH
Confidence 4444454444444433322111 267899999999999999999985 57889999999999999987
Q ss_pred h
Q 013173 447 I 447 (448)
Q Consensus 447 l 447 (448)
+
T Consensus 357 ~ 357 (773)
T 2xau_A 357 F 357 (773)
T ss_dssp G
T ss_pred H
Confidence 6
No 60
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.95 E-value=1.1e-28 Score=260.62 Aligned_cols=217 Identities=18% Similarity=0.120 Sum_probs=156.4
Q ss_pred CCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhc
Q 013173 168 PTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFS 247 (448)
Q Consensus 168 pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~ 247 (448)
+.+.|+.+++.+..++|++++||||||||++|.+|+++. +.++||++|||+||.|+++.+.+..
T Consensus 218 ~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~----------------g~~vLVl~PTReLA~Qia~~l~~~~ 281 (666)
T 3o8b_A 218 VFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ----------------GYKVLVLNPSVAATLGFGAYMSKAH 281 (666)
T ss_dssp SCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT----------------TCCEEEEESCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC----------------CCeEEEEcchHHHHHHHHHHHHHHh
Confidence 344555555666688999999999999999999998751 2359999999999999998876653
Q ss_pred ccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcccccCCCHHHHHHHHHHcCC
Q 013173 248 YQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDM 327 (448)
Q Consensus 248 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~ 327 (448)
+..+...+|+.. +..+++|+|+||++| +....+.++++++||||||| +++++|...+..|++.+
T Consensus 282 ---g~~vg~~vG~~~-------~~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH-~l~~~~~~~l~~Il~~l-- 345 (666)
T 3o8b_A 282 ---GIDPNIRTGVRT-------ITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECH-STDSTTILGIGTVLDQA-- 345 (666)
T ss_dssp ---SCCCEEECSSCE-------ECCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTT-CCSHHHHHHHHHHHHHT--
T ss_pred ---CCCeeEEECcEe-------ccCCCCEEEECcHHH---HhCCCcccCcccEEEEccch-hcCccHHHHHHHHHHhh--
Confidence 345556677654 345689999999997 45667788999999999996 56778888899999988
Q ss_pred CCCCCcE--EEEEeccCchHHHHHHHhhhcCcEEEEecccccccCceeEEEEEecccchHHHHHHHHHHHHhcCCCCCCC
Q 013173 328 PPPGMRQ--TMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQA 405 (448)
Q Consensus 328 ~~~~~~q--~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~ 405 (448)
+..+| +++||||++..+. ...+....+. ....... ........ +.. .+.+
T Consensus 346 --~~~~~~llil~SAT~~~~i~------~~~p~i~~v~---~~~~~~i---~~~~~~~~-------l~~-------~~~~ 397 (666)
T 3o8b_A 346 --ETAGARLVVLATATPPGSVT------VPHPNIEEVA---LSNTGEI---PFYGKAIP-------IEA-------IRGG 397 (666)
T ss_dssp --TTTTCSEEEEEESSCTTCCC------CCCTTEEEEE---CBSCSSE---EETTEEEC-------GGG-------SSSS
T ss_pred --hhcCCceEEEECCCCCcccc------cCCcceEEEe---ecccchh---HHHHhhhh-------hhh-------ccCC
Confidence 44444 7788999987422 0111111110 0000101 11111100 000 1267
Q ss_pred cEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCCHHHHH
Q 013173 406 LTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTS 444 (448)
Q Consensus 406 ~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~ 444 (448)
++||||+|++.|+.+++.|...++++..+||+|++++|.
T Consensus 398 ~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~er~ 436 (666)
T 3o8b_A 398 RHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSVIP 436 (666)
T ss_dssp EEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGGSC
T ss_pred cEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHHHH
Confidence 899999999999999999999999999999999998764
No 61
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.94 E-value=2.6e-28 Score=260.68 Aligned_cols=222 Identities=15% Similarity=0.174 Sum_probs=146.6
Q ss_pred HHHCCCC-----CCCHHHH-----hHHhhHh------CCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCC
Q 013173 160 IRRCKYV-----KPTPVQR-----HAIPISI------GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVY 223 (448)
Q Consensus 160 l~~~~~~-----~pt~~Q~-----~~i~~i~------~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~ 223 (448)
+..+||. +||++|+ .+||.++ .++|++++++||||||++|++|+++.+... +
T Consensus 203 l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~------------~ 270 (673)
T 2wv9_A 203 LYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQK------------R 270 (673)
T ss_dssp EEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHT------------T
T ss_pred eeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhC------------C
Confidence 3445666 8999999 9999888 899999999999999999999999887642 2
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHH---------HHHhccccc
Q 013173 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLV---------DLLERARVS 294 (448)
Q Consensus 224 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~---------~~l~~~~~~ 294 (448)
+++|||+||++||.|+++.++.+. +. . ..+ . +. .++||++++ ..+... ..
T Consensus 271 ~~~lilaPTr~La~Q~~~~l~~~~----i~--~-~~~-~-------l~-----~v~tp~~ll~~l~~~~l~~~l~~~-~~ 329 (673)
T 2wv9_A 271 LRTAVLAPTRVVAAEMAEALRGLP----VR--Y-LTP-A-------VQ-----REHSGNEIVDVMCHATLTHRLMSP-LR 329 (673)
T ss_dssp CCEEEEESSHHHHHHHHHHTTTSC----CE--E-CCC----------------CCCCSCCCEEEEEHHHHHHHHHSS-SC
T ss_pred CcEEEEccHHHHHHHHHHHHhcCC----ee--e-ecc-c-------cc-----ccCCHHHHHHHHHhhhhHHHHhcc-cc
Confidence 569999999999999999988752 22 1 110 0 00 145555443 333222 36
Q ss_pred CCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEecccccccCceeE
Q 013173 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQ 374 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q 374 (448)
++++++|||||||++ +..+...+..+...+. +...|+|+||||++..+..+... ..++.. +
T Consensus 330 l~~l~lvViDEaH~~-~~~~~~~~~~l~~~~~---~~~~~vl~~SAT~~~~i~~~~~~--~~~i~~-v------------ 390 (673)
T 2wv9_A 330 VPNYNLFVMDEAHFT-DPASIAARGYIATRVE---AGEAAAIFMTATPPGTSDPFPDT--NSPVHD-V------------ 390 (673)
T ss_dssp CCCCSEEEEESTTCC-CHHHHHHHHHHHHHHH---TTSCEEEEECSSCTTCCCSSCCC--SSCEEE-E------------
T ss_pred cccceEEEEeCCccc-CccHHHHHHHHHHhcc---ccCCcEEEEcCCCChhhhhhccc--CCceEE-E------------
Confidence 899999999999998 2222233444444431 25689999999998775432221 011110 0
Q ss_pred EEEEecccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCCHHHHHHhh
Q 013173 375 RVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 375 ~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
...+....+ ..++..+.. ...++||||++++.|+.+++.|...++++..+||+ +|++++
T Consensus 391 -~~~~~~~~~-~~~l~~l~~--------~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~ 449 (673)
T 2wv9_A 391 -SSEIPDRAW-SSGFEWITD--------YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEY 449 (673)
T ss_dssp -ECCCCSSCC-SSCCHHHHS--------CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHG
T ss_pred -eeecCHHHH-HHHHHHHHh--------CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHH
Confidence 000111111 112233322 16789999999999999999999999999999994 566554
No 62
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.93 E-value=3.5e-26 Score=236.15 Aligned_cols=229 Identities=18% Similarity=0.129 Sum_probs=164.7
Q ss_pred CCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013173 166 VKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK 245 (448)
Q Consensus 166 ~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~ 245 (448)
.+|+|+|.++++.++.+++++++++||+|||++|+.++... +.++|||+||++|+.|+++++++
T Consensus 92 ~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~----------------~~~~Lvl~P~~~L~~Q~~~~~~~ 155 (472)
T 2fwr_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL----------------STPTLIVVPTLALAEQWKERLGI 155 (472)
T ss_dssp CCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH----------------CSCEEEEESSHHHHHHHHHHGGG
T ss_pred CCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc----------------CCCEEEEECCHHHHHHHHHHHHh
Confidence 37999999999999999999999999999999999987753 13599999999999999999999
Q ss_pred hcccCCcE-EEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcccccCCCHHHHHHHHHH
Q 013173 246 FSYQTGVK-VVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQ 324 (448)
Q Consensus 246 ~~~~~~~~-~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~ 324 (448)
| +++ +..++|+... .++|+|+||+.|...+... ..++++|||||||++....|.. ++..
T Consensus 156 ~----~~~~v~~~~g~~~~---------~~~Ivv~T~~~l~~~~~~~---~~~~~liIvDEaH~~~~~~~~~----~~~~ 215 (472)
T 2fwr_A 156 F----GEEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPAESYVQ----IAQM 215 (472)
T ss_dssp G----CGGGEEEBSSSCBC---------CCSEEEEEHHHHHHTHHHH---TTTCSEEEEETGGGTTSTTTHH----HHHT
T ss_pred C----CCcceEEECCCcCC---------cCCEEEEEcHHHHHHHHHh---cCCCCEEEEECCcCCCChHHHH----HHHh
Confidence 5 567 7777776542 4799999999998766521 2568999999999999887753 4554
Q ss_pred cCCCCCCCcEEEEEeccCch-------------------HHHHHHHhhhcCcEEEEeccc--cc----------------
Q 013173 325 MDMPPPGMRQTMLFSATFPK-------------------EIQRLASDFLANYIFLAVGRV--GS---------------- 367 (448)
Q Consensus 325 l~~~~~~~~q~i~~SAT~~~-------------------~v~~l~~~~l~~~~~i~v~~~--~~---------------- 367 (448)
+ ...+++++|||+.. .+..+...++.++....+... ..
T Consensus 216 ~-----~~~~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 290 (472)
T 2fwr_A 216 S-----IAPFRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFL 290 (472)
T ss_dssp C-----CCSEEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCS
T ss_pred c-----CCCeEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHH
Confidence 4 24579999999862 233333333333322111000 00
Q ss_pred --------ccCceeEEE---------------------EEecccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHH
Q 013173 368 --------STDLIVQRV---------------------EFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGAD 418 (448)
Q Consensus 368 --------~~~~i~q~~---------------------~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~ 418 (448)
....+.+.+ ..+....|...|.+++... .+.++||||++++.++
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-------~~~k~lvF~~~~~~~~ 363 (472)
T 2fwr_A 291 RARGITLRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERH-------RKDKIIIFTRHNELVY 363 (472)
T ss_dssp SSCCCTTTCCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHT-------SSSCBCCBCSCHHHHH
T ss_pred HhcCccccchhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhC-------CCCcEEEEECCHHHHH
Confidence 000000000 0012344666777777663 2678999999999999
Q ss_pred HHHHHHHHCCCCeEEecCCCCHHHHHHhh
Q 013173 419 ALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 419 ~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
.+++.|. +..+||++++.+|++++
T Consensus 364 ~l~~~l~-----~~~~~g~~~~~~R~~~~ 387 (472)
T 2fwr_A 364 RISKVFL-----IPAITHRTSREEREEIL 387 (472)
T ss_dssp HHHHHTT-----CCBCCSSSCSHHHHTHH
T ss_pred HHHHHhC-----cceeeCCCCHHHHHHHH
Confidence 9999983 66899999999998875
No 63
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.93 E-value=2.8e-27 Score=242.22 Aligned_cols=198 Identities=18% Similarity=0.161 Sum_probs=136.0
Q ss_pred hHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEE
Q 013173 178 ISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVA 257 (448)
Q Consensus 178 ~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~ 257 (448)
.+++|+|++++++||||||++|++|+++.+... ++++||++||++||.|+++.++.+. +. .
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~------------~~~~lil~Ptr~La~Q~~~~l~~~~----v~--~- 64 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARR------------RLRTLVLAPTRVVLSEMKEAFHGLD----VK--F- 64 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT------------TCCEEEEESSHHHHHHHHHHTTTSC----EE--E-
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc------------CCeEEEEcchHHHHHHHHHHHhcCC----eE--E-
Confidence 456899999999999999999999999877643 2569999999999999999988642 22 1
Q ss_pred ECCCChHHHHHHHhcCccE-EEeChHHHHHHHhccc--------ccCCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCC
Q 013173 258 YGGAPINQQLRELERGVDI-LVATPGRLVDLLERAR--------VSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMP 328 (448)
Q Consensus 258 ~gg~~~~~~~~~l~~~~~I-lv~Tp~~l~~~l~~~~--------~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~ 328 (448)
..+ .+ .|+||+++++++..+. ..+.++++|||||||++ +.+|...+..+...+.
T Consensus 65 ~~~--------------~~~~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~-- 127 (440)
T 1yks_A 65 HTQ--------------AFSAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRAR-- 127 (440)
T ss_dssp ESS--------------CCCCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHH--
T ss_pred ecc--------------cceeccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhc--
Confidence 111 11 3888887765544332 24899999999999998 4344333333333331
Q ss_pred CCCCcEEEEEeccCchHHHHHHHhhhcCcEEEEecccccccCceeEEEEEecccchHHHHHHHHHHHHhcCCCCCCCcEE
Q 013173 329 PPGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTL 408 (448)
Q Consensus 329 ~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~tl 408 (448)
+...|+++||||+++.+..++... .++. .....+....+ ..++..+... +.++|
T Consensus 128 -~~~~~~l~~SAT~~~~~~~~~~~~--~~~~--------------~~~~~~~~~~~-~~~~~~l~~~--------~~~~l 181 (440)
T 1yks_A 128 -ANESATILMTATPPGTSDEFPHSN--GEIE--------------DVQTDIPSEPW-NTGHDWILAD--------KRPTA 181 (440)
T ss_dssp -TTSCEEEEECSSCTTCCCSSCCCS--SCEE--------------EEECCCCSSCC-SSSCHHHHHC--------CSCEE
T ss_pred -cCCceEEEEeCCCCchhhhhhhcC--CCee--------------EeeeccChHHH-HHHHHHHHhc--------CCCEE
Confidence 356899999999988755333211 1111 11111121111 1122333322 56899
Q ss_pred EEeCchhhHHHHHHHHHHCCCCeEEecCC
Q 013173 409 VFVETKKGADALEHWLYMNGFPATTIHGD 437 (448)
Q Consensus 409 VF~~t~~~a~~l~~~L~~~g~~~~~iHg~ 437 (448)
|||++++.|+.+++.|...++++..+||+
T Consensus 182 VF~~s~~~a~~l~~~L~~~~~~v~~lhg~ 210 (440)
T 1yks_A 182 WFLPSIRAANVMAASLRKAGKSVVVLNRK 210 (440)
T ss_dssp EECSCHHHHHHHHHHHHHTTCCEEECCSS
T ss_pred EEeCCHHHHHHHHHHHHHcCCCEEEecch
Confidence 99999999999999999999999999993
No 64
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.92 E-value=1.4e-25 Score=206.53 Aligned_cols=170 Identities=19% Similarity=0.247 Sum_probs=122.9
Q ss_pred CCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHH-HHHH
Q 013173 164 KYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQ-IHVE 242 (448)
Q Consensus 164 ~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~q-i~~~ 242 (448)
...+|+++|.++++.++.++++++++|||+|||++|+++++..+...... ...+++||++|+++|+.| +.+.
T Consensus 30 ~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~-------~~~~~~lil~p~~~L~~q~~~~~ 102 (216)
T 3b6e_A 30 PELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKA-------SEPGKVIVLVNKVLLVEQLFRKE 102 (216)
T ss_dssp CCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHT-------TCCCCEEEEESSHHHHHHHHHHT
T ss_pred CCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccc-------cCCCcEEEEECHHHHHHHHHHHH
Confidence 45589999999999999999999999999999999999998877654311 123569999999999999 7788
Q ss_pred HHHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhccc------ccCCCeeEEEEcCCcccccCCCHH
Q 013173 243 AKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERAR------VSLQMIRYLALDEADRMLDMGFEP 316 (448)
Q Consensus 243 ~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~------~~l~~v~~lVlDEah~ll~~gf~~ 316 (448)
++++... ++++..++|+.........+...++|+|+||++|.+++.... +.+.++++|||||||++++.++..
T Consensus 103 ~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~ 181 (216)
T 3b6e_A 103 FQPFLKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYN 181 (216)
T ss_dssp HHHHHTT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHH
T ss_pred HHHHhcc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHH
Confidence 8888654 678888888776555444555568999999999999987643 567889999999999998877666
Q ss_pred HHH-HHHHHc---------CCCCCCCcEEEEEecc
Q 013173 317 QIR-KIVQQM---------DMPPPGMRQTMLFSAT 341 (448)
Q Consensus 317 ~i~-~i~~~l---------~~~~~~~~q~i~~SAT 341 (448)
.+. .++... .....+..++|+||||
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 182 NIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 553 222211 1112256789999998
No 65
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.92 E-value=1.6e-25 Score=230.48 Aligned_cols=204 Identities=16% Similarity=0.135 Sum_probs=136.9
Q ss_pred HhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEE
Q 013173 176 IPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVV 255 (448)
Q Consensus 176 i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~ 255 (448)
...+.+++++++++|||||||++|++|+++.+... ++++||++|||+||.|+++.++.+ .+.
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~------------~~~~lvl~Ptr~La~Q~~~~l~g~------~v~ 76 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQ------------RLRTAVLAPTRVVAAEMAEALRGL------PVR 76 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHT------------TCCEEEEECSHHHHHHHHHHTTTS------CEE
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhC------------CCcEEEECchHHHHHHHHHHhcCc------eEe
Confidence 34566789999999999999999999999887642 256999999999999999998743 222
Q ss_pred EEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcc-----cccCCCHHHHHHHHHHcCCCCC
Q 013173 256 VAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADR-----MLDMGFEPQIRKIVQQMDMPPP 330 (448)
Q Consensus 256 ~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~-----ll~~gf~~~i~~i~~~l~~~~~ 330 (448)
...+.... .-..+.-+.++|.+.+...+... ..++++++|||||||+ ++.++|...+. . .
T Consensus 77 ~~~~~~~~-----~~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~----~-----~ 141 (459)
T 2z83_A 77 YQTSAVQR-----EHQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDPASIAARGYIATKV----E-----L 141 (459)
T ss_dssp ECC-------------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSHHHHHHHHHHHHHH----H-----T
T ss_pred EEeccccc-----CCCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCCchhhHHHHHHHHHh----c-----c
Confidence 11111100 01223457788999887766654 4589999999999998 44444322221 1 3
Q ss_pred CCcEEEEEeccCchHHHHHHHhhhcCcEEEEecccccccCceeEEEEEecccchHHHHHHHHHHHHhcCCCCCCCcEEEE
Q 013173 331 GMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVF 410 (448)
Q Consensus 331 ~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~tlVF 410 (448)
...|+++||||++.++..+... ..++..... .+. ..+...+++++... .+++|||
T Consensus 142 ~~~~~il~SAT~~~~~~~~~~~--~~pi~~~~~--------------~~~-~~~~~~~~~~l~~~--------~~~~LVF 196 (459)
T 2z83_A 142 GEAAAIFMTATPPGTTDPFPDS--NAPIHDLQD--------------EIP-DRAWSSGYEWITEY--------AGKTVWF 196 (459)
T ss_dssp TSCEEEEECSSCTTCCCSSCCC--SSCEEEEEC--------------CCC-SSCCSSCCHHHHHC--------CSCEEEE
T ss_pred CCccEEEEEcCCCcchhhhccC--CCCeEEecc--------------cCC-cchhHHHHHHHHhc--------CCCEEEE
Confidence 4689999999999775432221 122222110 001 11111122334332 5679999
Q ss_pred eCchhhHHHHHHHHHHCCCCeEEecCC
Q 013173 411 VETKKGADALEHWLYMNGFPATTIHGD 437 (448)
Q Consensus 411 ~~t~~~a~~l~~~L~~~g~~~~~iHg~ 437 (448)
|++++.|+.+++.|...++++..+||+
T Consensus 197 ~~s~~~~~~l~~~L~~~g~~v~~lh~~ 223 (459)
T 2z83_A 197 VASVKMGNEIAMCLQRAGKKVIQLNRK 223 (459)
T ss_dssp CSCHHHHHHHHHHHHHTTCCEEEESTT
T ss_pred eCChHHHHHHHHHHHhcCCcEEecCHH
Confidence 999999999999999999999999996
No 66
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.91 E-value=2.2e-24 Score=220.13 Aligned_cols=204 Identities=15% Similarity=0.110 Sum_probs=136.4
Q ss_pred CCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECC
Q 013173 181 GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGG 260 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg 260 (448)
+|+|+++++|||||||++|++|+++.+... ++++|||+||++|+.|+++.+.. +.+....++
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~------------g~~~lvl~Pt~~La~Q~~~~~~~------~~v~~~~~~ 62 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKK------------RLRTVILAPTRVVASEMYEALRG------EPIRYMTPA 62 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHT------------TCCEEEEESSHHHHHHHHHHTTT------SCEEEC---
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhC------------CCCEEEECcHHHHHHHHHHHhCC------CeEEEEecC
Confidence 478999999999999999999999776543 24699999999999999988763 344443333
Q ss_pred CChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEec
Q 013173 261 APINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSA 340 (448)
Q Consensus 261 ~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SA 340 (448)
... .-..+.-+.+.|.+.+.+.+.. ...+.++++|||||||++ +.++..++..+..... +...|+|+|||
T Consensus 63 ~~~-----~~~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~---~~~~~~l~~SA 132 (431)
T 2v6i_A 63 VQS-----ERTGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVS---MGDAGAIFMTA 132 (431)
T ss_dssp -----------CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHH---TTSCEEEEEES
T ss_pred ccc-----cCCCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhh---CCCCcEEEEeC
Confidence 111 1112345677899988776665 456899999999999997 4344444444444431 34689999999
Q ss_pred cCchHHHHHHHhhhcCcEEEEecccccccCceeEEEEEecccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHH
Q 013173 341 TFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADAL 420 (448)
Q Consensus 341 T~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l 420 (448)
|+++.+..+... ..++. .+. ..+. ..+...+++++... .+++||||++++.|+.+
T Consensus 133 T~~~~~~~~~~~--~~~i~-~~~-------------~~~~-~~~~~~~~~~l~~~--------~~~~lVF~~~~~~~~~l 187 (431)
T 2v6i_A 133 TPPGTTEAFPPS--NSPII-DEE-------------TRIP-DKAWNSGYEWITEF--------DGRTVWFVHSIKQGAEI 187 (431)
T ss_dssp SCTTCCCSSCCC--SSCCE-EEE-------------CCCC-SSCCSSCCHHHHSC--------SSCEEEECSSHHHHHHH
T ss_pred CCCcchhhhcCC--CCcee-ecc-------------ccCC-HHHHHHHHHHHHcC--------CCCEEEEeCCHHHHHHH
Confidence 999754322111 01111 000 0011 11122233344332 55799999999999999
Q ss_pred HHHHHHCCCCeEEecCC
Q 013173 421 EHWLYMNGFPATTIHGD 437 (448)
Q Consensus 421 ~~~L~~~g~~~~~iHg~ 437 (448)
++.|...++++..+||+
T Consensus 188 ~~~L~~~~~~v~~lhg~ 204 (431)
T 2v6i_A 188 GTCLQKAGKKVLYLNRK 204 (431)
T ss_dssp HHHHHHTTCCEEEESTT
T ss_pred HHHHHHcCCeEEEeCCc
Confidence 99999999999999997
No 67
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.91 E-value=2.1e-24 Score=202.50 Aligned_cols=183 Identities=16% Similarity=0.154 Sum_probs=132.6
Q ss_pred CHHHHHHHHHCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCc
Q 013173 153 GEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPT 232 (448)
Q Consensus 153 ~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Pt 232 (448)
++.+.+.+.......++++|.++++.+..|++++++|+||||||++|.+++++.+..... ...+++||++|+
T Consensus 47 ~~~~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~--------~~~~~~l~~~p~ 118 (235)
T 3llm_A 47 DHDLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR--------AAECNIVVTQPR 118 (235)
T ss_dssp CHHHHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC--------GGGCEEEEEESS
T ss_pred CHHHHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC--------CCceEEEEeccc
Confidence 333333333333445789999999999999999999999999999999999887765431 234679999999
Q ss_pred HHHHHHHHHHHHHhc-ccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCccc-c
Q 013173 233 RELSSQIHVEAKKFS-YQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRM-L 310 (448)
Q Consensus 233 reL~~qi~~~~~~~~-~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~l-l 310 (448)
++|+.|+++.+.... ...+..+........ ......++|+|+|||+|++++.. .++++++|||||||++ +
T Consensus 119 ~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~-----~~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~ 190 (235)
T 3llm_A 119 RISAVSVAERVAFERGEEPGKSCGYSVRFES-----ILPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDI 190 (235)
T ss_dssp HHHHHHHHHHHHHTTTCCTTSSEEEEETTEE-----ECCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCH
T ss_pred hHHHHHHHHHHHHHhccccCceEEEeechhh-----ccCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCc
Confidence 999999998887653 233333332221110 00113478999999999999876 4899999999999997 7
Q ss_pred cCCCH-HHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcE
Q 013173 311 DMGFE-PQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYI 358 (448)
Q Consensus 311 ~~gf~-~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~ 358 (448)
+++|. ..++.++... ++.|+++||||++.+. +.+.|...++
T Consensus 191 ~~~~~~~~l~~i~~~~-----~~~~~il~SAT~~~~~--~~~~~~~~pv 232 (235)
T 3llm_A 191 NTDFLLVVLRDVVQAY-----PEVRIVLMSATIDTSM--FCEYFFNCPI 232 (235)
T ss_dssp HHHHHHHHHHHHHHHC-----TTSEEEEEECSSCCHH--HHHHTTSCCC
T ss_pred chHHHHHHHHHHHhhC-----CCCeEEEEecCCCHHH--HHHHcCCCCE
Confidence 77776 4566666554 3689999999999886 5554544443
No 68
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.91 E-value=5.8e-23 Score=218.30 Aligned_cols=131 Identities=19% Similarity=0.148 Sum_probs=114.2
Q ss_pred HCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHH
Q 013173 162 RCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHV 241 (448)
Q Consensus 162 ~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~ 241 (448)
.+|+ +|+++|..++|.++.|+ |++++||+|||++|.+|++...+. +..|+||+||++||.|+++
T Consensus 75 ~lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~-------------G~qv~VvTPTreLA~Qdae 138 (997)
T 2ipc_A 75 YLGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALT-------------GKGVHVVTVNDYLARRDAE 138 (997)
T ss_dssp HTCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTT-------------CSCCEEEESSHHHHHHHHH
T ss_pred HhCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHh-------------CCCEEEEeCCHHHHHHHHH
Confidence 3688 99999999999999998 999999999999999999654432 1249999999999999999
Q ss_pred HHHHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHH-HHHHhccc------ccCC---CeeEEEEcCCcccc
Q 013173 242 EAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRL-VDLLERAR------VSLQ---MIRYLALDEADRML 310 (448)
Q Consensus 242 ~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l-~~~l~~~~------~~l~---~v~~lVlDEah~ll 310 (448)
.+..+...+++++.+++||.+. +.+....++||+|+||++| +++|..+. +.++ .+.++||||+|.||
T Consensus 139 ~m~~l~~~lGLsv~~i~Gg~~~--~~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 139 WMGPVYRGLGLSVGVIQHASTP--AERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp HHHHHHHTTTCCEEECCTTCCH--HHHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred HHHHHHHhcCCeEEEEeCCCCH--HHHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 9999999999999999999884 3445556799999999999 89887653 4577 89999999999997
No 69
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.91 E-value=2.8e-24 Score=228.01 Aligned_cols=255 Identities=17% Similarity=0.153 Sum_probs=138.7
Q ss_pred CCCHHHHhHHhhHhC----C-CCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHH-
Q 013173 167 KPTPVQRHAIPISIG----G-RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIH- 240 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~~----g-~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~- 240 (448)
.|+|+|.++|+.++. + ++++++++||||||++++ +++..++...... ......+++|||+||++|+.|+.
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~-~~~~~l~~~~~~~---~~~~~~~~vlil~P~~~L~~Q~~~ 253 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAF-QISWKLWSARWNR---TGDYRKPRILFLADRNVLVDDPKD 253 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHH-HHHHHHHHTTCCS---SCSSSCCCEEEEEC----------
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHH-HHHHHHHhccccc---ccccCCCeEEEEeCCHHHHHHHHH
Confidence 699999999998775 4 669999999999999964 4555555432111 01124567999999999999999
Q ss_pred HHHHHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhc----ccccCCCeeEEEEcCCcccccCCCHH
Q 013173 241 VEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLER----ARVSLQMIRYLALDEADRMLDMGFEP 316 (448)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~----~~~~l~~v~~lVlDEah~ll~~gf~~ 316 (448)
+.++.|.. .+..+.++ ......+|+|+||++|...+.. ..+....+++|||||||++.... ..
T Consensus 254 ~~~~~~~~----~~~~~~~~--------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~ 320 (590)
T 3h1t_A 254 KTFTPFGD----ARHKIEGG--------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NS 320 (590)
T ss_dssp -CCTTTCS----SEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC---------
T ss_pred HHHHhcch----hhhhhhcc--------CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hH
Confidence 77777643 23333322 2234689999999999887652 23456789999999999997643 25
Q ss_pred HHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhhcCcEE------------------EEecccccccC--------
Q 013173 317 QIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYIF------------------LAVGRVGSSTD-------- 370 (448)
Q Consensus 317 ~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~------------------i~v~~~~~~~~-------- 370 (448)
.+..++..+ + ..++++||||+..........++..++. +.+.. .....
T Consensus 321 ~~~~il~~~----~-~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~-~~~~~~~~~~~~~ 394 (590)
T 3h1t_A 321 NWREILEYF----E-PAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVIS-EVDAAGWRPSKGD 394 (590)
T ss_dssp -CHHHHHHS----T-TSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEE-TTCC---------
T ss_pred HHHHHHHhC----C-cceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeee-eeecccccccccc
Confidence 667788887 2 3579999999864332222222222222 11110 00000
Q ss_pred ------ceeEEEEEecc-------cchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCC--------
Q 013173 371 ------LIVQRVEFVHE-------SDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGF-------- 429 (448)
Q Consensus 371 ------~i~q~~~~~~~-------~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~-------- 429 (448)
.+......... ..+...+.+.+....... ....++||||+++.+|+.+++.|...+.
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~--~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~ 472 (590)
T 3h1t_A 395 VDRFGREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRT--DRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPD 472 (590)
T ss_dssp --------------CCSHHHHHHHHHTHHHHHHHHHHHHHHH--CTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTT
T ss_pred ccccccccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhc--CCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCC
Confidence 00000000000 112223333332221110 1257899999999999999999987543
Q ss_pred CeEEecCCCCHHHHHHhh
Q 013173 430 PATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 430 ~~~~iHg~~~q~eR~~~l 447 (448)
.+..+||++++ +|+++|
T Consensus 473 ~~~~i~g~~~~-~r~~~l 489 (590)
T 3h1t_A 473 YVARVTSEEGK-IGKGHL 489 (590)
T ss_dssp SEEECSSTTHH-HHHHHH
T ss_pred eEEEEeCCChH-HHHHHH
Confidence 27889999875 677664
No 70
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.90 E-value=1.6e-23 Score=223.31 Aligned_cols=220 Identities=11% Similarity=0.055 Sum_probs=149.8
Q ss_pred HHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccC
Q 013173 171 VQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQT 250 (448)
Q Consensus 171 ~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~ 250 (448)
.|.+.....+.+++++++||||||||+ +++..+... ..+||++|||+||.|+++.++++
T Consensus 144 ~~~~p~ar~l~rk~vlv~apTGSGKT~----~al~~l~~~-------------~~gl~l~PtR~LA~Qi~~~l~~~---- 202 (677)
T 3rc3_A 144 PNWYPDARAMQRKIIFHSGPTNSGKTY----HAIQKYFSA-------------KSGVYCGPLKLLAHEIFEKSNAA---- 202 (677)
T ss_dssp GGGCHHHHTSCCEEEEEECCTTSSHHH----HHHHHHHHS-------------SSEEEEESSHHHHHHHHHHHHHT----
T ss_pred hhhCHHHHhcCCCEEEEEcCCCCCHHH----HHHHHHHhc-------------CCeEEEeCHHHHHHHHHHHHHhc----
Confidence 344444556789999999999999998 455555432 12699999999999999999885
Q ss_pred CcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCC
Q 013173 251 GVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPP 330 (448)
Q Consensus 251 ~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~ 330 (448)
++++..++|+..... ..-.+..+++++|++.+. ....+++|||||||++++.+|...+..++..+. .
T Consensus 203 g~~v~lltG~~~~iv--~TpGr~~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~---~ 269 (677)
T 3rc3_A 203 GVPCDLVTGEERVTV--QPNGKQASHVSCTVEMCS--------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLC---A 269 (677)
T ss_dssp TCCEEEECSSCEECC--STTCCCCSEEEEEGGGCC--------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCC---E
T ss_pred CCcEEEEECCeeEEe--cCCCcccceeEecHhHhh--------hcccCCEEEEecceecCCccchHHHHHHHHccC---c
Confidence 677888888754300 000011455555553321 247789999999999999999999999999882 2
Q ss_pred CCcEEEEEeccCchHHHHHHHhhhcCcEEEEecccccccCceeEEEEEecccchHHHHHHHHHHHHhcCCCCCCCcEEEE
Q 013173 331 GMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVF 410 (448)
Q Consensus 331 ~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~tlVF 410 (448)
..+|++++|||. +.+..++... ...+.+..... .... ...... +..+... ....|||
T Consensus 270 ~~i~il~~SAT~-~~i~~l~~~~-~~~~~v~~~~r---~~~l----~~~~~~------l~~l~~~--------~~g~iIf 326 (677)
T 3rc3_A 270 EEVHLCGEPAAI-DLVMELMYTT-GEEVEVRDYKR---LTPI----SVLDHA------LESLDNL--------RPGDCIV 326 (677)
T ss_dssp EEEEEEECGGGH-HHHHHHHHHH-TCCEEEEECCC---SSCE----EECSSC------CCSGGGC--------CTTEEEE
T ss_pred cceEEEeccchH-HHHHHHHHhc-CCceEEEEeee---cchH----HHHHHH------HHHHHhc--------CCCCEEE
Confidence 678999999994 3455555443 23333221100 0000 011100 0001111 2346999
Q ss_pred eCchhhHHHHHHHHHHCCCCeEEecCCCCHHHHHHhh
Q 013173 411 VETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 411 ~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
|+|++.++.+++.|...++.+..+||+|++++|++++
T Consensus 327 ~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~ 363 (677)
T 3rc3_A 327 CFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQA 363 (677)
T ss_dssp CSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHH
T ss_pred EcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHH
Confidence 9999999999999999999999999999999998875
No 71
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.88 E-value=6.8e-23 Score=197.39 Aligned_cols=156 Identities=15% Similarity=0.148 Sum_probs=124.9
Q ss_pred CCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013173 166 VKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK 245 (448)
Q Consensus 166 ~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~ 245 (448)
.+|+++|.++++.++.+++.+++++||+|||+++++++...+... ..++|||+||++|+.|+.+++++
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~------------~~~~lil~Pt~~L~~q~~~~l~~ 179 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY------------EGKILIIVPTTALTTQMADDFVD 179 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHC------------SSEEEEECSSHHHHHHHHHHHHH
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcC------------CCeEEEEECCHHHHHHHHHHHHH
Confidence 379999999999998888899999999999999988877655321 12599999999999999999999
Q ss_pred hcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcccccCCCHHHHHHHHHHc
Q 013173 246 FSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQM 325 (448)
Q Consensus 246 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l 325 (448)
+.......+..+++|..... ......+|+|+||+.+... ....+.++++|||||||++.. +.+..++..+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~---~~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~ 249 (282)
T 1rif_A 180 YRLFSHAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG----KSISSIISGL 249 (282)
T ss_dssp HTSCCGGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTS---CGGGGGGEEEEEEETGGGCCH----HHHHHHTTTC
T ss_pred hcccccceEEEEeCCCcchh---hhccCCcEEEEchHHHHhh---HHHHHhhCCEEEEECCccCCc----ccHHHHHHHh
Confidence 97766778888888765432 1224589999999987543 223467899999999999975 5777777776
Q ss_pred CCCCCCCcEEEEEeccCchHHH
Q 013173 326 DMPPPGMRQTMLFSATFPKEIQ 347 (448)
Q Consensus 326 ~~~~~~~~q~i~~SAT~~~~v~ 347 (448)
....++++||||++....
T Consensus 250 ----~~~~~~l~lSATp~~~~~ 267 (282)
T 1rif_A 250 ----NNCMFKFGLSGSLRDGKA 267 (282)
T ss_dssp ----TTCCEEEEECSSCCTTST
T ss_pred ----hcCCeEEEEeCCCCCcch
Confidence 457899999999976543
No 72
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.86 E-value=9.4e-21 Score=196.82 Aligned_cols=246 Identities=14% Similarity=0.155 Sum_probs=162.8
Q ss_pred CCCHHHHhHHhhH----hCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 013173 167 KPTPVQRHAIPIS----IGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVE 242 (448)
Q Consensus 167 ~pt~~Q~~~i~~i----~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~ 242 (448)
+|+|+|.++++.+ ..+++++++.+||+|||++++. ++..+.... ...++||||| ..|+.|+.++
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~-~i~~~~~~~----------~~~~~LIv~P-~~l~~qw~~e 104 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIA-VFSDAKKEN----------ELTPSLVICP-LSVLKNWEEE 104 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHH-HHHHHHHTT----------CCSSEEEEEC-STTHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHH-HHHHHHhcC----------CCCCEEEEcc-HHHHHHHHHH
Confidence 6999999999876 3578999999999999999654 444443321 1234999999 5689999999
Q ss_pred HHHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcccccCCCHHHHHHHH
Q 013173 243 AKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIV 322 (448)
Q Consensus 243 ~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~ 322 (448)
++++.. ..++.+++|+... .....++|+|+|++.|.+... +....+++|||||||++...+ ....+.+
T Consensus 105 ~~~~~~--~~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~--~~~~~~l 172 (500)
T 1z63_A 105 LSKFAP--HLRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQ--TKIFKAV 172 (500)
T ss_dssp HHHHCT--TSCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTT--SHHHHHH
T ss_pred HHHHCC--CceEEEEecCchh-----ccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHh--HHHHHHH
Confidence 999864 4566665555421 112347999999999875443 344578999999999997654 2344555
Q ss_pred HHcCCCCCCCcEEEEEeccCch----HHHHHH---------------------------------HhhhcCcEEEEeccc
Q 013173 323 QQMDMPPPGMRQTMLFSATFPK----EIQRLA---------------------------------SDFLANYIFLAVGRV 365 (448)
Q Consensus 323 ~~l~~~~~~~~q~i~~SAT~~~----~v~~l~---------------------------------~~~l~~~~~i~v~~~ 365 (448)
..+ + ..+.+++|||+.. ++..++ ..++. ++.+.....
T Consensus 173 ~~l----~-~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~-~~~lrr~k~ 246 (500)
T 1z63_A 173 KEL----K-SKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIIS-PFILRRTKY 246 (500)
T ss_dssp HTS----C-EEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHT-TTEECCCTT
T ss_pred Hhh----c-cCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHh-hHeeeeccc
Confidence 555 2 2467999999732 121111 11111 222211110
Q ss_pred ----ccccCceeEEEEEecc---------------------------------------------------------cch
Q 013173 366 ----GSSTDLIVQRVEFVHE---------------------------------------------------------SDK 384 (448)
Q Consensus 366 ----~~~~~~i~q~~~~~~~---------------------------------------------------------~~k 384 (448)
....+........++- ..|
T Consensus 247 ~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K 326 (500)
T 1z63_A 247 DKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGK 326 (500)
T ss_dssp CHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHH
T ss_pred ccchhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchh
Confidence 0112222222222221 234
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHC-CCCeEEecCCCCHHHHHHhh
Q 013173 385 RSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN-GFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 385 ~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~-g~~~~~iHg~~~q~eR~~~l 447 (448)
...+.+++..... .+.++||||+++..++.+++.|... |+.+..+||++++.+|++++
T Consensus 327 ~~~l~~~l~~~~~-----~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~ 385 (500)
T 1z63_A 327 MIRTMEIIEEALD-----EGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDII 385 (500)
T ss_dssp HHHHHHHHHHHHT-----TTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHc-----cCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHH
Confidence 4445555554432 2678999999999999999999885 99999999999999999875
No 73
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.85 E-value=1e-20 Score=209.78 Aligned_cols=153 Identities=18% Similarity=0.131 Sum_probs=116.6
Q ss_pred CCCHHHHhHHhhHhC--------------CCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCc
Q 013173 167 KPTPVQRHAIPISIG--------------GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPT 232 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~~--------------g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Pt 232 (448)
.|+|+|.++++.++. +++.+++++||||||+++ ++++..+... ...+++|||+|+
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~----------~~~~rvLvlvpr 339 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATEL----------DFIDKVFFVVDR 339 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTC----------TTCCEEEEEECG
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhc----------CCCceEEEEeCc
Confidence 499999999998765 378999999999999997 6666444221 123579999999
Q ss_pred HHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHHh-cCccEEEeChHHHHHHHhccc--ccCCCeeEEEEcCCccc
Q 013173 233 RELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELE-RGVDILVATPGRLVDLLERAR--VSLQMIRYLALDEADRM 309 (448)
Q Consensus 233 reL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~-~~~~Ilv~Tp~~l~~~l~~~~--~~l~~v~~lVlDEah~l 309 (448)
++|+.|+.+.+.+|... .+.++.+.......+. .+++|+|+||++|.+++.... ..+....+||+||||++
T Consensus 340 ~eL~~Q~~~~f~~f~~~------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs 413 (1038)
T 2w00_A 340 KDLDYQTMKEYQRFSPD------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRS 413 (1038)
T ss_dssp GGCCHHHHHHHHTTSTT------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTT
T ss_pred HHHHHHHHHHHHHhccc------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchh
Confidence 99999999999998643 1245555555556664 468999999999999886532 23567899999999998
Q ss_pred ccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCch
Q 013173 310 LDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPK 344 (448)
Q Consensus 310 l~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~ 344 (448)
.. ...+..|...+ + ..++++||||+..
T Consensus 414 ~~---~~~~~~I~~~~----p-~a~~lgfTATP~~ 440 (1038)
T 2w00_A 414 QF---GEAQKNLKKKF----K-RYYQFGFTGTPIF 440 (1038)
T ss_dssp HH---HHHHHHHHHHC----S-SEEEEEEESSCCC
T ss_pred cc---hHHHHHHHHhC----C-cccEEEEeCCccc
Confidence 64 34456677776 3 3789999999864
No 74
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.82 E-value=1.7e-20 Score=208.73 Aligned_cols=158 Identities=14% Similarity=0.104 Sum_probs=104.0
Q ss_pred CCCCHHHHhHHhhHhC--CCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q 013173 166 VKPTPVQRHAIPISIG--GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEA 243 (448)
Q Consensus 166 ~~pt~~Q~~~i~~i~~--g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~ 243 (448)
.+|+|+|.+++..++. +.+++++.+||+|||++++..+...+.... ..++|||||+ .|+.|...++
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~-----------~~rvLIVvP~-sLl~Qw~~E~ 219 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGA-----------AERVLIIVPE-TLQHQWLVEM 219 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSS-----------CCCEEEECCT-TTHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCC-----------CCeEEEEeCH-HHHHHHHHHH
Confidence 3689999999988775 457999999999999998776655443221 1249999999 9999999999
Q ss_pred HHhcccCCcEEEEEECCCChHHHHHH---HhcCccEEEeChHHHHHHHhc-ccccCCCeeEEEEcCCcccccCCCH-HHH
Q 013173 244 KKFSYQTGVKVVVAYGGAPINQQLRE---LERGVDILVATPGRLVDLLER-ARVSLQMIRYLALDEADRMLDMGFE-PQI 318 (448)
Q Consensus 244 ~~~~~~~~~~~~~~~gg~~~~~~~~~---l~~~~~Ilv~Tp~~l~~~l~~-~~~~l~~v~~lVlDEah~ll~~gf~-~~i 318 (448)
.+.. ++++.++.++ ........ .....+|+|+|++.|...... ..+...++++|||||||++...+.. ...
T Consensus 220 ~~~f---~l~v~v~~~~-~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~ 295 (968)
T 3dmq_A 220 LRRF---NLRFALFDDE-RYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSRE 295 (968)
T ss_dssp HHHS---CCCCEECCHH-HHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHH
T ss_pred HHHh---CCCEEEEccc-hhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHH
Confidence 6643 4555554332 22111111 111369999999988643221 1234567899999999999654421 111
Q ss_pred HHHHHHcCCCCCCCcEEEEEeccC
Q 013173 319 RKIVQQMDMPPPGMRQTMLFSATF 342 (448)
Q Consensus 319 ~~i~~~l~~~~~~~~q~i~~SAT~ 342 (448)
..++..+. ....+++++|||.
T Consensus 296 ~~~l~~L~---~~~~~~L~LTATP 316 (968)
T 3dmq_A 296 YQAIEQLA---EHVPGVLLLTATP 316 (968)
T ss_dssp HHHHHHHH---TTCSSEEESCSSC
T ss_pred HHHHHHHh---hcCCcEEEEEcCC
Confidence 23333331 1234589999997
No 75
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.80 E-value=3.7e-18 Score=186.87 Aligned_cols=255 Identities=19% Similarity=0.203 Sum_probs=166.3
Q ss_pred CCCCHHHHhHHhhHh----CCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHH
Q 013173 166 VKPTPVQRHAIPISI----GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHV 241 (448)
Q Consensus 166 ~~pt~~Q~~~i~~i~----~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~ 241 (448)
.+++|+|.+++..++ .+++.|++.+||+|||+..+..+...+.... ....+||||| ..|+.|..+
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~----------~~~~~LIV~P-~sll~qW~~ 303 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARR----------QNGPHIIVVP-LSTMPAWLD 303 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHS----------CCSCEEEECC-TTTHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcC----------CCCCEEEEEC-chHHHHHHH
Confidence 378999999998665 7899999999999999987655443332221 1123899999 778899999
Q ss_pred HHHHhcccCCcEEEEEECCCChHHHHHHHh------------cCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCccc
Q 013173 242 EAKKFSYQTGVKVVVAYGGAPINQQLRELE------------RGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRM 309 (448)
Q Consensus 242 ~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~------------~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~l 309 (448)
++.+++ .++++.+++|+.......+... ..++|+|+|++.+...... +....+++|||||||++
T Consensus 304 E~~~~~--p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~--l~~~~w~~vIvDEaH~l 379 (800)
T 3mwy_W 304 TFEKWA--PDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE--LGSIKWQFMAVDEAHRL 379 (800)
T ss_dssp HHHHHS--TTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH--HHTSEEEEEEETTGGGG
T ss_pred HHHHHC--CCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH--HhcCCcceeehhhhhhh
Confidence 999986 3567777666655444433321 2478999999999764332 22346789999999999
Q ss_pred ccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccC----chHHHHHHHhhhc-----------------------------C
Q 013173 310 LDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATF----PKEIQRLASDFLA-----------------------------N 356 (448)
Q Consensus 310 l~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~----~~~v~~l~~~~l~-----------------------------~ 356 (448)
-... ..+...+..+ . ....+++|||. ..++..++.-+.. .
T Consensus 380 kn~~--s~~~~~l~~l----~-~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~ 452 (800)
T 3mwy_W 380 KNAE--SSLYESLNSF----K-VANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQ 452 (800)
T ss_dssp CCSS--SHHHHHHTTS----E-EEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTG
T ss_pred cCch--hHHHHHHHHh----h-hccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHh
Confidence 5533 3444555554 2 23468999997 2333333322111 1
Q ss_pred cEEEEecc--cccccCceeEEEEEec------------------------------------------------------
Q 013173 357 YIFLAVGR--VGSSTDLIVQRVEFVH------------------------------------------------------ 380 (448)
Q Consensus 357 ~~~i~v~~--~~~~~~~i~q~~~~~~------------------------------------------------------ 380 (448)
++.+.-.. .....+.....+..+.
T Consensus 453 p~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~ 532 (800)
T 3mwy_W 453 PFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEER 532 (800)
T ss_dssp GGEEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHH
T ss_pred HHHhhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHH
Confidence 11111000 0011111222222221
Q ss_pred ---------------------ccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCC
Q 013173 381 ---------------------ESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRT 439 (448)
Q Consensus 381 ---------------------~~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~ 439 (448)
...|...|.++|..... .+.++||||+.+..++.|+++|...|+++..|||+++
T Consensus 533 ~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~-----~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~ 607 (800)
T 3mwy_W 533 VLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKK-----DGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVP 607 (800)
T ss_dssp HCCCC----CCSHHHHHHHHHTCHHHHHHHHHHHHHTT-----TTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSC
T ss_pred HHHhcccccccHHHHHHHhhhcChHHHHHHHHHHHHhh-----CCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 12344455555555432 2678999999999999999999999999999999999
Q ss_pred HHHHHHhh
Q 013173 440 QQRTSIEI 447 (448)
Q Consensus 440 q~eR~~~l 447 (448)
+.+|.++|
T Consensus 608 ~~eR~~~i 615 (800)
T 3mwy_W 608 SAQRRISI 615 (800)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999876
No 76
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.80 E-value=5.6e-19 Score=165.68 Aligned_cols=139 Identities=22% Similarity=0.147 Sum_probs=110.0
Q ss_pred CCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013173 166 VKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK 245 (448)
Q Consensus 166 ~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~ 245 (448)
.+|+++|.+++..++.+++++++++||+|||.+++.++... ..++||++|+++|+.|+.+.+.+
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~----------------~~~~liv~P~~~L~~q~~~~~~~ 155 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL----------------STPTLIVVPTLALAEQWKERLGI 155 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS----------------CSCEEEEESSHHHHHHHHHHHGG
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc----------------CCCEEEEeCCHHHHHHHHHHHHh
Confidence 47999999999999999999999999999999988876542 13499999999999999999988
Q ss_pred hcccCCcE-EEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcccccCCCHHHHHHHHHH
Q 013173 246 FSYQTGVK-VVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQ 324 (448)
Q Consensus 246 ~~~~~~~~-~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~ 324 (448)
| +++ +..+.|+.. ...+|+|+|++.+...+... ...+++|||||||++.+..| ..++..
T Consensus 156 ~----~~~~v~~~~g~~~---------~~~~i~v~T~~~l~~~~~~~---~~~~~llIiDEaH~l~~~~~----~~i~~~ 215 (237)
T 2fz4_A 156 F----GEEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPAESY----VQIAQM 215 (237)
T ss_dssp G----CGGGEEEESSSCB---------CCCSEEEEEHHHHHHTHHHH---TTTCSEEEEECSSCCCTTTH----HHHHHT
T ss_pred C----CCCeEEEEeCCCC---------CcCCEEEEeHHHHHhhHHHh---cccCCEEEEECCccCCChHH----HHHHHh
Confidence 4 566 666666543 24799999999987765521 35689999999999987654 345555
Q ss_pred cCCCCCCCcEEEEEeccCchH
Q 013173 325 MDMPPPGMRQTMLFSATFPKE 345 (448)
Q Consensus 325 l~~~~~~~~q~i~~SAT~~~~ 345 (448)
+ + ..++++||||++..
T Consensus 216 ~----~-~~~~l~LSATp~r~ 231 (237)
T 2fz4_A 216 S----I-APFRLGLTATFERE 231 (237)
T ss_dssp C----C-CSEEEEEEESCC--
T ss_pred c----c-CCEEEEEecCCCCC
Confidence 5 2 46789999998754
No 77
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.79 E-value=2.5e-17 Score=176.15 Aligned_cols=159 Identities=18% Similarity=0.164 Sum_probs=108.8
Q ss_pred CCCHHHHhHHhhHh---------CCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHH
Q 013173 167 KPTPVQRHAIPISI---------GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSS 237 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~---------~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~ 237 (448)
.++|+|.+++..+. .++..|+..+||+|||+..+..+...+ ..... ......++|||+|+ .|+.
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~-~~~~~-----~~p~~~~~LiV~P~-sll~ 127 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLL-KQSPD-----CKPEIDKVIVVSPS-SLVR 127 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHH-HCCTT-----SSCSCSCEEEEECH-HHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHH-HhCcc-----ccCCCCcEEEEecH-HHHH
Confidence 69999999998763 456799999999999999766555433 22211 11122358999997 8889
Q ss_pred HHHHHHHHhcccCCcEEEEEECCCChHH--HHHHHhc------CccEEEeChHHHHHHHhcccccCCCeeEEEEcCCccc
Q 013173 238 QIHVEAKKFSYQTGVKVVVAYGGAPINQ--QLRELER------GVDILVATPGRLVDLLERARVSLQMIRYLALDEADRM 309 (448)
Q Consensus 238 qi~~~~~~~~~~~~~~~~~~~gg~~~~~--~~~~l~~------~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~l 309 (448)
|..+++.++... .+.+..+++|..... ....... ..+|+|+|++.+..... .+....+++||+||||++
T Consensus 128 qW~~E~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~--~l~~~~~~~vI~DEaH~i 204 (644)
T 1z3i_X 128 NWYNEVGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE--VLHKGKVGLVICDEGHRL 204 (644)
T ss_dssp HHHHHHHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT--TTTTSCCCEEEETTGGGC
T ss_pred HHHHHHHHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHH--HhhcCCccEEEEECceec
Confidence 999999998754 456666676654321 1112111 36899999999876543 233456789999999998
Q ss_pred ccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccC
Q 013173 310 LDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATF 342 (448)
Q Consensus 310 l~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~ 342 (448)
-... ......+..+ .. ...+++|||.
T Consensus 205 kn~~--~~~~~al~~l----~~-~~rl~LTgTP 230 (644)
T 1z3i_X 205 KNSD--NQTYLALNSM----NA-QRRVLISGTP 230 (644)
T ss_dssp CTTC--HHHHHHHHHH----CC-SEEEEECSSC
T ss_pred CChh--hHHHHHHHhc----cc-CcEEEEecCc
Confidence 6543 3444555566 22 3579999996
No 78
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.77 E-value=4.8e-17 Score=170.31 Aligned_cols=254 Identities=16% Similarity=0.131 Sum_probs=177.3
Q ss_pred CCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013173 166 VKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK 245 (448)
Q Consensus 166 ~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~ 245 (448)
..|+++|....-.+..|+ |+...||+|||+++.+|++-..+. +..+.|++|+++||.|-++.+..
T Consensus 74 ~r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~-------------G~~vhVvT~ndyLA~rdae~m~~ 138 (822)
T 3jux_A 74 MRPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALI-------------GKGVHLVTVNDYLARRDALWMGP 138 (822)
T ss_dssp CCCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTT-------------SSCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhc-------------CCceEEEeccHHHHHhHHHHHHH
Confidence 379999999988888887 999999999999999999754443 23499999999999999999999
Q ss_pred hcccCCcEEEEEECC--------------------------------------------------CChHHHHHHHhcCcc
Q 013173 246 FSYQTGVKVVVAYGG--------------------------------------------------APINQQLRELERGVD 275 (448)
Q Consensus 246 ~~~~~~~~~~~~~gg--------------------------------------------------~~~~~~~~~l~~~~~ 275 (448)
+....|+++.+++.. .+.. .+.-.-.||
T Consensus 139 l~~~Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--err~aY~~D 216 (822)
T 3jux_A 139 VYLFLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEI--TRKEAYLCD 216 (822)
T ss_dssp HHHHTTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBC--CHHHHHHSS
T ss_pred HHHHhCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHH--HHHHHhcCC
Confidence 999999999998872 1111 111222489
Q ss_pred EEEeChHHH-HHHHhcc------cccCCCeeEEEEcCCcccc-cC--------C-------CHHHHHHHHHHcCC-----
Q 013173 276 ILVATPGRL-VDLLERA------RVSLQMIRYLALDEADRML-DM--------G-------FEPQIRKIVQQMDM----- 327 (448)
Q Consensus 276 Ilv~Tp~~l-~~~l~~~------~~~l~~v~~lVlDEah~ll-~~--------g-------f~~~i~~i~~~l~~----- 327 (448)
|+++|..-| .|+|..+ ......+.|.||||+|.+| |. | +...+..++..+..
T Consensus 217 ItYgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~ 296 (822)
T 3jux_A 217 VTYGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFT 296 (822)
T ss_dssp EEEEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEE
T ss_pred CEEccCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEE
Confidence 999999887 4555432 1224668899999999764 11 0 00111111111100
Q ss_pred ---------------------------CC---------------------------------------------------
Q 013173 328 ---------------------------PP--------------------------------------------------- 329 (448)
Q Consensus 328 ---------------------------~~--------------------------------------------------- 329 (448)
..
T Consensus 297 vdek~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~ 376 (822)
T 3jux_A 297 VDEKARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSG 376 (822)
T ss_dssp ECCSSSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGG
T ss_pred EEcccCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCch
Confidence 00
Q ss_pred ------------------------------CCCcEEEEEeccCchHHHHHHHhhhcCcEEEEecccccccCceeE-EEEE
Q 013173 330 ------------------------------PGMRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQ-RVEF 378 (448)
Q Consensus 330 ------------------------------~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q-~~~~ 378 (448)
..-.++.+||+|+..+...+...|-.+ .+.+ ....+...+.+ .+.+
T Consensus 377 GLHQaiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~--vv~I-Ptnkp~~R~d~~d~vy 453 (822)
T 3jux_A 377 GLHQAIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGME--VVVI-PTHKPMIRKDHDDLVF 453 (822)
T ss_dssp GHHHHHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCCC--EEEC-CCSSCCCCEECCCEEE
T ss_pred HHHHHHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCCe--EEEE-CCCCCcceeecCcEEE
Confidence 000468999999988877776655333 2222 22222233333 3556
Q ss_pred ecccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCCHHHHH
Q 013173 379 VHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTS 444 (448)
Q Consensus 379 ~~~~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~ 444 (448)
....+|...+.+.+...... +.++||||+|++.|+.|+..|...|+++.++||+..+.||.
T Consensus 454 ~t~~eK~~al~~~I~~~~~~-----gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ 514 (822)
T 3jux_A 454 RTQKEKYEKIVEEIEKRYKK-----GQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAE 514 (822)
T ss_dssp SSHHHHHHHHHHHHHHHHHH-----TCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHH
T ss_pred ecHHHHHHHHHHHHHHHhhC-----CCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHH
Confidence 77788999999988865322 67899999999999999999999999999999995555543
No 79
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.67 E-value=1.6e-16 Score=167.02 Aligned_cols=129 Identities=16% Similarity=0.035 Sum_probs=102.5
Q ss_pred CCCHHHHhHHhh----HhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHH
Q 013173 167 KPTPVQRHAIPI----SIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVE 242 (448)
Q Consensus 167 ~pt~~Q~~~i~~----i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~ 242 (448)
+|+|.|.+.+.. +..++|++++||||+|||++|++|++.. .+++||++||++|+.|+.++
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~----------------~~~v~i~~pt~~l~~q~~~~ 66 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV----------------KPKVLFVVRTHNEFYPIYRD 66 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH----------------CSEEEEEESSGGGHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC----------------CCeEEEEcCCHHHHHHHHHH
Confidence 799999997764 4579999999999999999999999961 25699999999999999999
Q ss_pred HHHhcccCCcEEEEEECCCCh---------------------------------HHHH------------------HHHh
Q 013173 243 AKKFSYQTGVKVVVAYGGAPI---------------------------------NQQL------------------RELE 271 (448)
Q Consensus 243 ~~~~~~~~~~~~~~~~gg~~~---------------------------------~~~~------------------~~l~ 271 (448)
+.++....++++..+.|..+. .... +...
T Consensus 67 ~~~l~~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~ 146 (551)
T 3crv_A 67 LTKIREKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSL 146 (551)
T ss_dssp HTTCCCSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHG
T ss_pred HHHHhhhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhh
Confidence 999987778888887663221 1111 2333
Q ss_pred cCccEEEeChHHHHHHHhcccccC-CCeeEEEEcCCccccc
Q 013173 272 RGVDILVATPGRLVDLLERARVSL-QMIRYLALDEADRMLD 311 (448)
Q Consensus 272 ~~~~Ilv~Tp~~l~~~l~~~~~~l-~~v~~lVlDEah~ll~ 311 (448)
..+||||+|++.|++...+..+.+ ....+|||||||.|.+
T Consensus 147 ~~adIVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 147 YKADVIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp GGCSEEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred hcCCEEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 468999999999998865544433 4678999999999977
No 80
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.59 E-value=2.1e-14 Score=153.64 Aligned_cols=103 Identities=20% Similarity=0.142 Sum_probs=69.2
Q ss_pred CcEEEEEeccCchHHHHHHHhhhcCcEEEEecccccccCceeEEEEEecccchHHHHHHHHHHHHhcCCCCCCCcEEEEe
Q 013173 332 MRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFV 411 (448)
Q Consensus 332 ~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~ 411 (448)
..|+++||||++...... ....+...+.......+ .+.......+...|+..|...... +.++||||
T Consensus 380 ~~q~i~~SAT~~~~~~~~----~~~~~~~~~r~~~l~~p----~i~v~~~~~~~~~Ll~~l~~~~~~-----~~~vlVf~ 446 (664)
T 1c4o_A 380 VSQVVFVSATPGPFELAH----SGRVVEQIIRPTGLLDP----LVRVKPTENQILDLMEGIRERAAR-----GERTLVTV 446 (664)
T ss_dssp CSEEEEEESSCCHHHHHH----CSEEEEECSCTTCCCCC----EEEEECSTTHHHHHHHHHHHHHHT-----TCEEEEEC
T ss_pred cCCEEEEecCCCHHHHHh----hhCeeeeeeccCCCCCC----eEEEecccchHHHHHHHHHHHHhc-----CCEEEEEE
Confidence 578999999998654222 11111111111111111 122333445566666666554322 67899999
Q ss_pred CchhhHHHHHHHHHHCCCCeEEecCCCCHHHHHHhh
Q 013173 412 ETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 412 ~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
+|+..|+.|+++|...|+++..+||++++.+|.+++
T Consensus 447 ~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~ 482 (664)
T 1c4o_A 447 LTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALI 482 (664)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHH
Confidence 999999999999999999999999999999999875
No 81
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.55 E-value=4e-15 Score=155.79 Aligned_cols=127 Identities=23% Similarity=0.170 Sum_probs=87.6
Q ss_pred CCCCCCCHHHHhHHh----hHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHH
Q 013173 163 CKYVKPTPVQRHAIP----ISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQ 238 (448)
Q Consensus 163 ~~~~~pt~~Q~~~i~----~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~q 238 (448)
.+| +|+|+|.+++. .+..+++++++||||+|||++|++|++.. .+++||++||++|+.|
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~----------------~~~~~~~~~t~~l~~q 66 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL----------------KKKVLIFTRTHSQLDS 66 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH----------------TCEEEEEESCHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC----------------CCcEEEEcCCHHHHHH
Confidence 366 89999999865 44588999999999999999999998752 2469999999999999
Q ss_pred HHHHHHHhcccCCcEEEEEECCCCh--------H---------------------------------------HHHHHHh
Q 013173 239 IHVEAKKFSYQTGVKVVVAYGGAPI--------N---------------------------------------QQLRELE 271 (448)
Q Consensus 239 i~~~~~~~~~~~~~~~~~~~gg~~~--------~---------------------------------------~~~~~l~ 271 (448)
+.+++.++ ++++..+.|.... . ...+...
T Consensus 67 ~~~~~~~l----~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~ 142 (540)
T 2vl7_A 67 IYKNAKLL----GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANL 142 (540)
T ss_dssp HHHHHGGG----TCCEEEC---------------------------------------------------------CTTG
T ss_pred HHHHHHhc----CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHh
Confidence 99999885 3333333322110 0 0001112
Q ss_pred cCccEEEeChHHHHHHHhcccc-------cCCCeeEEEEcCCcccc
Q 013173 272 RGVDILVATPGRLVDLLERARV-------SLQMIRYLALDEADRML 310 (448)
Q Consensus 272 ~~~~Ilv~Tp~~l~~~l~~~~~-------~l~~v~~lVlDEah~ll 310 (448)
..+||||+|+..|++.+....+ .+....+|||||||.|.
T Consensus 143 ~~adiVV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 143 KDKDVIAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp GGCSEEEEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred hcCCEEEEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHH
Confidence 3469999999999886543322 24567899999999994
No 82
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.43 E-value=8.6e-14 Score=148.82 Aligned_cols=257 Identities=18% Similarity=0.179 Sum_probs=150.8
Q ss_pred HHHHHHHHHCCCCCCCHHHHhH-----------HhhH---------hCCC--CeeEEccCCCCccch-----hhhhHHHH
Q 013173 154 EALNLNIRRCKYVKPTPVQRHA-----------IPIS---------IGGR--DLMACAQTGSGKTAA-----FCFPIISG 206 (448)
Q Consensus 154 ~~l~~~l~~~~~~~pt~~Q~~~-----------i~~i---------~~g~--d~lv~a~TGsGKT~~-----~~lpil~~ 206 (448)
+.|.+.|..+||..-..++... +|.- +-|. |-|-.-.+.||||+. +++|+.+.
T Consensus 170 ~~l~~~L~~~GY~r~~~V~~~GefavRG~iiDIfp~~~~~~p~RiefFgDeIesIr~FD~~Tqrs~~~~~~v~i~Pa~e~ 249 (661)
T 2d7d_A 170 NELLRKLVDIQYARNDIDFQRGTFRVRGDVVEIFPASRDEHCVRVEFFGDEIERIREVDALTGEILGDRDHVAIFPASHF 249 (661)
T ss_dssp HHHHHHHHHTTCEECSSSCCTTEEEEETTEEEEECTTCSSEEEEEEESSSBEEEEEEEETTTCCEEEECSEEEECCSSSS
T ss_pred HHHHHHHHHcCCeeCCcCCCCceEEEeCceeEEeCCcccCceEEEEEcCceEEEEEEEccCcCcEeeccceEEEECCccc
Confidence 5788889999998766554432 1211 0111 123334567899965 78887765
Q ss_pred HhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH---------hcccC-----CcE-EEEEECCCChHHHHHHHh
Q 013173 207 IMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK---------FSYQT-----GVK-VVVAYGGAPINQQLRELE 271 (448)
Q Consensus 207 l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~---------~~~~~-----~~~-~~~~~gg~~~~~~~~~l~ 271 (448)
+..... ...++..++++|+.|+.. ++. +...+ .++ ...+.|+.+...+...+.
T Consensus 250 ~~~~~~-----------~~~~i~~i~~el~~qi~~-~~~~~~~~ea~~L~~~~~~~~e~l~~~~~~~G~e~~~~~~~~~~ 317 (661)
T 2d7d_A 250 VTRAEK-----------MEKAIQNIEKELEEQLKV-MHENGKLLEAQRLEQRTRYDLEMMREMGFCSGIENYSRHLTLRP 317 (661)
T ss_dssp CCCHHH-----------HHHHHHHHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHHHHHHHSCCTTGGGGHHHHTTCC
T ss_pred CcCHHH-----------HHHHHHHHHHHHHHHHHH-HHhcchHHHHHHHHHHhHhHHHHhhhcCeeccchhHHHHHcccc
Confidence 543321 124566788888877643 111 10000 011 122356666665555444
Q ss_pred cCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcccccC--CCHHHHH----HHHHHcCC-C------C-------CC
Q 013173 272 RGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDM--GFEPQIR----KIVQQMDM-P------P-------PG 331 (448)
Q Consensus 272 ~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~--gf~~~i~----~i~~~l~~-~------~-------~~ 331 (448)
.+ +||++|++++... .+|||||+|+|++. ++...+. .++..-.. + + +.
T Consensus 318 ~g-----~tpg~LlDyl~~~-------~llVlDEa~~~l~~~~~~~~~~~~~~~~l~~~G~~lp~~l~~~~l~~~e~~~~ 385 (661)
T 2d7d_A 318 PG-----STPYTLLDYFPDD-------FMIVVDESHVTIPQVRGMFNGDQARKQVLVDHGFRLPSALDNRPLRFEEFEKH 385 (661)
T ss_dssp TT-----CCCBCGGGGSCSS-------CEEEEETHHHHHHHHHHHHHHHHHHHHHHHHTTSSCGGGGGSCCCCHHHHHHT
T ss_pred CC-----CCccHHHHHcccC-------cEEEEecHHHHHHHHHHHHHHHHHHHHHHHHccccchhhhhcccccHHHHhcc
Confidence 44 8999999987543 27999999998742 1111111 11111000 0 0 13
Q ss_pred CcEEEEEeccCchHHHHHHHhhhcCcEEEEecccccccCceeEEEEEecccchHHHHHHHHHHHHhcCCCCCCCcEEEEe
Q 013173 332 MRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFV 411 (448)
Q Consensus 332 ~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~ 411 (448)
.+|+++||||++....... ...+...+.......+ .+.......+...|+..+..... .+.++||||
T Consensus 386 ~~q~i~~SAT~~~~~~~~~----~~~~~~~~r~~~l~~p----~i~v~~~~~~~~~Ll~~l~~~~~-----~~~~vlVf~ 452 (661)
T 2d7d_A 386 MHNIVYVSATPGPYEIEHT----DEMVEQIIRPTGLLDP----LIDVRPIEGQIDDLIGEIQARIE-----RNERVLVTT 452 (661)
T ss_dssp CSEEEEECSSCCHHHHHHC----SSCEEECCCTTCCCCC----EEEEECSTTHHHHHHHHHHHHHT-----TTCEEEEEC
T ss_pred CCCEEEEecCCChhHHHhh----hCeeeeeecccCCCCC----eEEEecccchHHHHHHHHHHHHh-----cCCeEEEEE
Confidence 5799999999986543221 1222222211111111 12223344556666666655432 267899999
Q ss_pred CchhhHHHHHHHHHHCCCCeEEecCCCCHHHHHHhh
Q 013173 412 ETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 412 ~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
+|+..|+.|++.|...|+++..+||++++.+|.+++
T Consensus 453 ~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l 488 (661)
T 2d7d_A 453 LTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEII 488 (661)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHH
Confidence 999999999999999999999999999999999875
No 83
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.34 E-value=7.2e-13 Score=140.63 Aligned_cols=84 Identities=19% Similarity=0.103 Sum_probs=68.8
Q ss_pred CCCCHHHHhHHh----hHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHH
Q 013173 166 VKPTPVQRHAIP----ISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHV 241 (448)
Q Consensus 166 ~~pt~~Q~~~i~----~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~ 241 (448)
.+|+|.|.+.+. .+..++|++++||||+|||++|++|++..+... ++++||++||++|+.|+.+
T Consensus 2 ~~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~------------~~kvli~t~T~~l~~Qi~~ 69 (620)
T 4a15_A 2 YENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER------------KLKVLYLVRTNSQEEQVIK 69 (620)
T ss_dssp ---CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH------------TCEEEEEESSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc------------CCeEEEECCCHHHHHHHHH
Confidence 368999998875 456899999999999999999999999887542 2469999999999999999
Q ss_pred HHHHhcccCCcEEEEEECCC
Q 013173 242 EAKKFSYQTGVKVVVAYGGA 261 (448)
Q Consensus 242 ~~~~~~~~~~~~~~~~~gg~ 261 (448)
++.++.....+++..+.|+.
T Consensus 70 el~~l~~~~~~~~~~l~gr~ 89 (620)
T 4a15_A 70 ELRSLSSTMKIRAIPMQGRV 89 (620)
T ss_dssp HHHHHHHHSCCCEEECCCHH
T ss_pred HHHHHhhccCeEEEEEECCC
Confidence 99998876677777666543
No 84
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.04 E-value=3.7e-10 Score=101.85 Aligned_cols=89 Identities=28% Similarity=0.421 Sum_probs=64.7
Q ss_pred HhhhcCcEEEEecccccccCceeEEEEEecccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCC
Q 013173 351 SDFLANYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFP 430 (448)
Q Consensus 351 ~~~l~~~~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~ 430 (448)
..+|.+|..+.++....+..++.|.+..++...|...|.++|... ..++||||+++..|+.+++.|...|+.
T Consensus 9 ~~~~~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~--------~~~~lVF~~~~~~~~~l~~~L~~~g~~ 80 (191)
T 2p6n_A 9 SGVDLGTENLYFQSMGAASLDVIQEVEYVKEEAKMVYLLECLQKT--------PPPVLIFAEKKADVDAIHEYLLLKGVE 80 (191)
T ss_dssp -------------------CCSEEEEEECCGGGHHHHHHHHHTTS--------CSCEEEECSCHHHHHHHHHHHHHHTCC
T ss_pred ccccCCCEEEEECCCCCCCcCceEEEEEcChHHHHHHHHHHHHhC--------CCCEEEEECCHHHHHHHHHHHHHcCCc
Confidence 467889999999888888899999999999999999999888753 457999999999999999999999999
Q ss_pred eEEecCCCCHHHHHHhh
Q 013173 431 ATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 431 ~~~iHg~~~q~eR~~~l 447 (448)
+..+||+|++.+|++++
T Consensus 81 ~~~lhg~~~~~~R~~~l 97 (191)
T 2p6n_A 81 AVAIHGGKDQEERTKAI 97 (191)
T ss_dssp EEEECTTSCHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHH
Confidence 99999999999999876
No 85
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.97 E-value=4.7e-10 Score=118.83 Aligned_cols=146 Identities=19% Similarity=0.230 Sum_probs=91.4
Q ss_pred CHHHHhHHhhHhCCCCeeEEccCCCCcc--chhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013173 169 TPVQRHAIPISIGGRDLMACAQTGSGKT--AAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF 246 (448)
Q Consensus 169 t~~Q~~~i~~i~~g~d~lv~a~TGsGKT--~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~ 246 (448)
++.|+.+++.++.++++++++++||||| ++++++++..+.. ..+.++++++||.++|.++.+.+..+
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~-----------~~~~~vll~APTg~AA~~L~e~~~~~ 219 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD-----------GERCRIRLAAPTGKAAARLTESLGKA 219 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS-----------SCCCCEEEEBSSHHHHHHHHHHHTHH
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh-----------cCCCeEEEEeCChhHHHHHHHHHHHH
Confidence 7899999999999999999999999999 6677777654311 12356999999999999999888775
Q ss_pred cccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcccccCCCHHHHHHHHHHcC
Q 013173 247 SYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMD 326 (448)
Q Consensus 247 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~ 326 (448)
....++..... .+.+. +...+ ..++-.+|+.. . +.........+++||||||+ |++ .+.+..++..+
T Consensus 220 ~~~l~l~~~~~-~~~~~--~~~Ti---h~ll~~~~~~~-~-~~~~~~~~l~~d~lIIDEAs-ml~---~~~~~~Ll~~l- 286 (608)
T 1w36_D 220 LRQLPLTDEQK-KRIPE--DASTL---HRLLGAQPGSQ-R-LRHHAGNPLHLDVLVVDEAS-MID---LPMMSRLIDAL- 286 (608)
T ss_dssp HHHSSCCSCCC-CSCSC--CCBTT---TSCC-------------CTTSCCSCSEEEECSGG-GCB---HHHHHHHHHTC-
T ss_pred HhcCCCCHHHH-hccch--hhhhh---HhhhccCCCch-H-HHhccCCCCCCCEEEEechh-hCC---HHHHHHHHHhC-
Confidence 44333221100 00000 00000 11222233321 1 11111223378999999999 555 57788888887
Q ss_pred CCCCCCcEEEEEecc
Q 013173 327 MPPPGMRQTMLFSAT 341 (448)
Q Consensus 327 ~~~~~~~q~i~~SAT 341 (448)
+...|+|++.-.
T Consensus 287 ---~~~~~liLvGD~ 298 (608)
T 1w36_D 287 ---PDHARVIFLGDR 298 (608)
T ss_dssp ---CTTCEEEEEECT
T ss_pred ---CCCCEEEEEcch
Confidence 667899988654
No 86
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=98.84 E-value=1.3e-08 Score=88.98 Aligned_cols=75 Identities=29% Similarity=0.328 Sum_probs=67.2
Q ss_pred ccccCceeEEEEEecccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCCHHHHHH
Q 013173 366 GSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSI 445 (448)
Q Consensus 366 ~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~ 445 (448)
+.+..++.|.+..++..+|...|.+++.... ..++||||+++..|+.+++.|...|+.+..+||+|++.+|.+
T Consensus 4 ~~~~~~i~~~~~~~~~~~K~~~L~~ll~~~~-------~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~ 76 (163)
T 2hjv_A 4 GLTTRNIEHAVIQVREENKFSLLKDVLMTEN-------PDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFD 76 (163)
T ss_dssp --CCCCEEEEEEECCGGGHHHHHHHHHHHHC-------CSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHH
T ss_pred ccCcccceEEEEECChHHHHHHHHHHHHhcC-------CCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHH
Confidence 3456789999999999999999999998753 678999999999999999999999999999999999999998
Q ss_pred hh
Q 013173 446 EI 447 (448)
Q Consensus 446 ~l 447 (448)
++
T Consensus 77 ~~ 78 (163)
T 2hjv_A 77 VM 78 (163)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 87
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=98.82 E-value=1.3e-08 Score=89.97 Aligned_cols=73 Identities=25% Similarity=0.292 Sum_probs=64.9
Q ss_pred ccCceeEEEEEecccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCCHHHHHHhh
Q 013173 368 STDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 368 ~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
+...+.|+|..++..+|...|.+++.... ..++||||+++..|+.+++.|...|+.+..+||+|++.+|++++
T Consensus 2 ~~~~i~q~~~~~~~~~K~~~L~~ll~~~~-------~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~ 74 (172)
T 1t5i_A 2 SLHGLQQYYVKLKDNEKNRKLFDLLDVLE-------FNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRY 74 (172)
T ss_dssp ---CCEEEEEECCGGGHHHHHHHHHHHSC-------CSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHH
T ss_pred ccCCeEEEEEECChHHHHHHHHHHHHhCC-------CCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHH
Confidence 35678999999999999999999998652 67899999999999999999999999999999999999999875
No 88
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=98.73 E-value=4.1e-08 Score=85.94 Aligned_cols=71 Identities=24% Similarity=0.266 Sum_probs=63.1
Q ss_pred CceeEEEEEecccc-hHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCCHHHHHHhh
Q 013173 370 DLIVQRVEFVHESD-KRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 370 ~~i~q~~~~~~~~~-k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
.++.|+|..++..+ |...|.+++.... ..++||||++++.|+.++..|...++.+..+||+|++.+|.+++
T Consensus 2 ~~i~~~~~~~~~~~~K~~~l~~ll~~~~-------~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~ 73 (165)
T 1fuk_A 2 EGIKQFYVNVEEEEYKYECLTDLYDSIS-------VTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIM 73 (165)
T ss_dssp --CEEEEEEEESGGGHHHHHHHHHHHTT-------CSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHH
T ss_pred CCcEEEEEECCcchhHHHHHHHHHHhCC-------CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHH
Confidence 46889999998877 9999999998753 67899999999999999999999999999999999999999875
No 89
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=98.73 E-value=2.5e-08 Score=88.26 Aligned_cols=74 Identities=16% Similarity=0.221 Sum_probs=65.4
Q ss_pred cccCceeEEEEEecccc-hHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCCHHHHHH
Q 013173 367 SSTDLIVQRVEFVHESD-KRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSI 445 (448)
Q Consensus 367 ~~~~~i~q~~~~~~~~~-k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~ 445 (448)
.+..++.|+|..++..+ |...|.+++.... ..++||||+++..|+.++..|...|+.+..+||+|++.+|.+
T Consensus 3 ~~~~~i~q~~~~~~~~~~K~~~L~~ll~~~~-------~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~ 75 (175)
T 2rb4_A 3 LTLNNIRQYYVLCEHRKDKYQALCNIYGSIT-------IGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRAS 75 (175)
T ss_dssp CCBCCEEEEEEECSSHHHHHHHHHHHHTTSC-------CSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHH
T ss_pred CccCCceEEEEEcCChHhHHHHHHHHHHhCC-------CCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHH
Confidence 35678999999998765 8888888887542 678999999999999999999999999999999999999998
Q ss_pred hh
Q 013173 446 EI 447 (448)
Q Consensus 446 ~l 447 (448)
++
T Consensus 76 ~~ 77 (175)
T 2rb4_A 76 II 77 (175)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 90
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=98.69 E-value=4.2e-08 Score=87.77 Aligned_cols=76 Identities=57% Similarity=0.868 Sum_probs=59.4
Q ss_pred ccccCceeEEEEEecccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCCHHHHHH
Q 013173 366 GSSTDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSI 445 (448)
Q Consensus 366 ~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~ 445 (448)
..+..++.|.+..++..+|...|.++|.... ...++||||+++..|+.+++.|...|+.+..+||+|++.+|++
T Consensus 14 ~~~~~~i~q~~~~v~~~~K~~~L~~ll~~~~------~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~ 87 (185)
T 2jgn_A 14 GSTSENITQKVVWVEESDKRSFLLDLLNATG------KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREE 87 (185)
T ss_dssp --CCTTEEEEEEECCGGGHHHHHHHHHHHC-------CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CH
T ss_pred CCCCCCceEEEEEeCcHHHHHHHHHHHHhcC------CCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHH
Confidence 4567889999999999999999999998742 2678999999999999999999999999999999999999988
Q ss_pred hh
Q 013173 446 EI 447 (448)
Q Consensus 446 ~l 447 (448)
++
T Consensus 88 ~~ 89 (185)
T 2jgn_A 88 AL 89 (185)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 91
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=98.41 E-value=6.9e-07 Score=86.03 Aligned_cols=70 Identities=23% Similarity=0.269 Sum_probs=63.8
Q ss_pred ceeEEEEEecccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCCHHHHHHhh
Q 013173 371 LIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 371 ~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
.+.|++..+...+|...|.+++.... ..++||||++++.++.|++.|...++.+..+||+|++.+|++++
T Consensus 2 ~v~~~~i~~~~~~K~~~L~~ll~~~~-------~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~ 71 (300)
T 3i32_A 2 TYEEEAVPAPVRGRLEVLSDLLYVAS-------PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVM 71 (300)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHC-------CSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHH
T ss_pred ceEEEEEECCHHHHHHHHHHHHHhcC-------CCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHH
Confidence 35678888999999999999998764 67899999999999999999999999999999999999999876
No 92
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=98.38 E-value=7.2e-07 Score=81.43 Aligned_cols=69 Identities=23% Similarity=0.278 Sum_probs=61.4
Q ss_pred eeEEEEEecccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCCHHHHHHhh
Q 013173 372 IVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 372 i~q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
+.+.+..+....|...|.+++.... ..++||||+++..++.+++.|...|+.+..+||+|++.+|++++
T Consensus 6 ~~~~~~~~~~~~k~~~l~~ll~~~~-------~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~ 74 (212)
T 3eaq_A 6 YEEEAVPAPVRGRLEVLSDLLYVAS-------PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVL 74 (212)
T ss_dssp BCCEEEECCTTSHHHHHHHHHHHHC-------CSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHH
T ss_pred eeeeEEeCCHHHHHHHHHHHHHhCC-------CCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHH
Confidence 3456667788899999999998653 67899999999999999999999999999999999999999875
No 93
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=97.70 E-value=5.3e-08 Score=85.72 Aligned_cols=71 Identities=23% Similarity=0.347 Sum_probs=62.5
Q ss_pred CceeEEEEEecc-cchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCCHHHHHHhh
Q 013173 370 DLIVQRVEFVHE-SDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 370 ~~i~q~~~~~~~-~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
+++.|.+..++. ..|...|.+++.... ..++||||+++..|+.+++.|...++.+..+||+|++.+|.+++
T Consensus 2 ~~i~~~~~~~~~~~~k~~~l~~ll~~~~-------~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~ 73 (170)
T 2yjt_D 2 KKIHQWYYRADDLEHKTALLVHLLKQPE-------ATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAI 73 (170)
Confidence 357788888887 889999988887642 67899999999999999999999999999999999999998775
No 94
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.03 E-value=1.3e-05 Score=81.72 Aligned_cols=69 Identities=17% Similarity=0.180 Sum_probs=50.9
Q ss_pred CCCCCCCHHHHhHHhhHhC----C-CCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHH
Q 013173 163 CKYVKPTPVQRHAIPISIG----G-RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSS 237 (448)
Q Consensus 163 ~~~~~pt~~Q~~~i~~i~~----g-~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~ 237 (448)
+.|..+++-|+.++..++. + ..+++.|+.|||||.+. ..++..+...+. ..+++++||...+.
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~~~-----------~~il~~a~T~~Aa~ 88 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALISTGE-----------TGIILAAPTHAAKK 88 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHTTC-----------CCEEEEESSHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhcCC-----------ceEEEecCcHHHHH
Confidence 4688899999999987653 2 38999999999999753 344445544321 24899999999887
Q ss_pred HHHHHH
Q 013173 238 QIHVEA 243 (448)
Q Consensus 238 qi~~~~ 243 (448)
.+.+.+
T Consensus 89 ~l~~~~ 94 (459)
T 3upu_A 89 ILSKLS 94 (459)
T ss_dssp HHHHHH
T ss_pred HHHhhh
Confidence 776655
No 95
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.99 E-value=2.4e-05 Score=82.04 Aligned_cols=127 Identities=15% Similarity=0.110 Sum_probs=78.4
Q ss_pred CCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013173 166 VKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK 245 (448)
Q Consensus 166 ~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~ 245 (448)
..+++.|+.++..++..+.+++.++.|+|||... ..++..+... +.++++++||...+..+.+.+..
T Consensus 188 ~~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i-~~l~~~l~~~------------g~~Vl~~ApT~~Aa~~L~e~~~~ 254 (574)
T 3e1s_A 188 KGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTT-KAVADLAESL------------GLEVGLCAPTGKAARRLGEVTGR 254 (574)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHH-HHHHHHHHHT------------TCCEEEEESSHHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHH-HHHHHHHHhc------------CCeEEEecCcHHHHHHhHhhhcc
Confidence 3578999999999999999999999999999753 2333333222 23489999999999877664421
Q ss_pred hcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcccccCCCHHHHHHHHHHc
Q 013173 246 FSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQM 325 (448)
Q Consensus 246 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l 325 (448)
....+ .+.+. .. |. .+..........++||||||+++-. ..+..++..+
T Consensus 255 -------~a~Ti---------h~ll~----~~---~~----~~~~~~~~~~~~dvlIIDEasml~~----~~~~~Ll~~~ 303 (574)
T 3e1s_A 255 -------TASTV---------HRLLG----YG---PQ----GFRHNHLEPAPYDLLIVDEVSMMGD----ALMLSLLAAV 303 (574)
T ss_dssp -------CEEEH---------HHHTT----EE---TT----EESCSSSSCCSCSEEEECCGGGCCH----HHHHHHHTTS
T ss_pred -------cHHHH---------HHHHc----CC---cc----hhhhhhcccccCCEEEEcCccCCCH----HHHHHHHHhC
Confidence 11100 00110 00 00 0111112334678999999996633 5666777666
Q ss_pred CCCCCCCcEEEEEec
Q 013173 326 DMPPPGMRQTMLFSA 340 (448)
Q Consensus 326 ~~~~~~~~q~i~~SA 340 (448)
+...+++++.-
T Consensus 304 ----~~~~~lilvGD 314 (574)
T 3e1s_A 304 ----PPGARVLLVGD 314 (574)
T ss_dssp ----CTTCEEEEEEC
T ss_pred ----cCCCEEEEEec
Confidence 45566666543
No 96
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.97 E-value=6.8e-05 Score=79.50 Aligned_cols=70 Identities=17% Similarity=0.143 Sum_probs=54.7
Q ss_pred CCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q 013173 165 YVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAK 244 (448)
Q Consensus 165 ~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~ 244 (448)
+..+++.|..++..++...-+++.+|.|+|||.... -++..+... ...++|+++||...+.++.+.+.
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~-~~i~~l~~~-----------~~~~ilv~a~tn~A~~~l~~~l~ 245 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA-TIVYHLARQ-----------GNGPVLVCAPSNIAVDQLTEKIH 245 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHH-HHHHHHHTS-----------SSCCEEEEESSHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHH-HHHHHHHHc-----------CCCeEEEEeCcHHHHHHHHHHHH
Confidence 456899999999998887789999999999998643 344444321 12359999999999999998887
Q ss_pred Hh
Q 013173 245 KF 246 (448)
Q Consensus 245 ~~ 246 (448)
+.
T Consensus 246 ~~ 247 (624)
T 2gk6_A 246 QT 247 (624)
T ss_dssp TT
T ss_pred hc
Confidence 64
No 97
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.87 E-value=0.00011 Score=79.79 Aligned_cols=70 Identities=14% Similarity=0.222 Sum_probs=54.9
Q ss_pred CCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q 013173 165 YVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAK 244 (448)
Q Consensus 165 ~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~ 244 (448)
+..+++.|+.|+..++.+.-++|.||.|||||.... -++..+.... ..++|+++||...+.++.+.+.
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~-~~i~~l~~~~-----------~~~ILv~a~tn~A~d~l~~rL~ 425 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSA-TIVYHLSKIH-----------KDRILVCAPSNVAVDHLAAKLR 425 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHH-HHHHHHHHHH-----------CCCEEEEESSHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH-HHHHHHHhCC-----------CCeEEEEcCcHHHHHHHHHHHH
Confidence 456889999999999887778999999999998643 3444444321 1349999999999999999988
Q ss_pred Hh
Q 013173 245 KF 246 (448)
Q Consensus 245 ~~ 246 (448)
+.
T Consensus 426 ~~ 427 (802)
T 2xzl_A 426 DL 427 (802)
T ss_dssp HT
T ss_pred hh
Confidence 75
No 98
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.87 E-value=1.6e-05 Score=84.80 Aligned_cols=67 Identities=16% Similarity=0.182 Sum_probs=52.6
Q ss_pred CCCHHHHhHHhhHhCCCC-eeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013173 167 KPTPVQRHAIPISIGGRD-LMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK 245 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~~g~d-~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~ 245 (448)
.+++-|++||..++..++ .+|++|.|||||.+..- ++..+.+. +.++|+++||..-|.++.+.+..
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~-~I~~l~~~------------~~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVE-IILQAVKQ------------GLKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHH-HHHHHHHT------------TCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHH-HHHHHHhC------------CCeEEEEcCchHHHHHHHHHHHh
Confidence 578999999999887776 78999999999987443 33344432 23599999999999999988876
Q ss_pred h
Q 013173 246 F 246 (448)
Q Consensus 246 ~ 246 (448)
.
T Consensus 256 ~ 256 (646)
T 4b3f_X 256 C 256 (646)
T ss_dssp T
T ss_pred c
Confidence 4
No 99
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.83 E-value=0.0017 Score=68.81 Aligned_cols=71 Identities=18% Similarity=0.176 Sum_probs=52.3
Q ss_pred CCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013173 166 VKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK 245 (448)
Q Consensus 166 ~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~ 245 (448)
..+++-|++++.. ....++|.|+.|||||.+.+--+. .++.... ...-++|++++|+..+.++.+.+.+
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~-~l~~~~~--------~~~~~iL~ltft~~aa~e~~~rl~~ 76 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIA-WLMSVEN--------CSPYSIMAVTFTNKAAAEMRHRIGQ 76 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHH-HHHHTSC--------CCGGGEEEEESSHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHH-HHHHhCC--------CChhhEEEEeccHHHHHHHHHHHHH
Confidence 4689999999973 366799999999999997443333 3333210 1112599999999999999999987
Q ss_pred hc
Q 013173 246 FS 247 (448)
Q Consensus 246 ~~ 247 (448)
+.
T Consensus 77 ~~ 78 (647)
T 3lfu_A 77 LM 78 (647)
T ss_dssp HH
T ss_pred Hh
Confidence 64
No 100
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.78 E-value=0.00016 Score=78.62 Aligned_cols=70 Identities=17% Similarity=0.130 Sum_probs=54.4
Q ss_pred CCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q 013173 165 YVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAK 244 (448)
Q Consensus 165 ~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~ 244 (448)
...+++.|+.++..++.+.-+++.+|.|+|||... .-++..+... ...++|+++||...+.++.+.+.
T Consensus 354 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti-~~~i~~l~~~-----------~~~~ilv~a~tn~A~~~l~~~l~ 421 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTS-ATIVYHLARQ-----------GNGPVLVCAPSNIAVDQLTEKIH 421 (800)
T ss_dssp SCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHH-HHHHHHHHTT-----------CSSCEEEEESSHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHH-HHHHHHHHHc-----------CCCcEEEEcCcHHHHHHHHHHHH
Confidence 34679999999999888778999999999999864 3344444331 12359999999999999988887
Q ss_pred Hh
Q 013173 245 KF 246 (448)
Q Consensus 245 ~~ 246 (448)
+.
T Consensus 422 ~~ 423 (800)
T 2wjy_A 422 QT 423 (800)
T ss_dssp TT
T ss_pred Hh
Confidence 64
No 101
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=97.48 E-value=0.00017 Score=68.18 Aligned_cols=64 Identities=11% Similarity=0.154 Sum_probs=56.3
Q ss_pred ecccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHC-CCCeEEecCCCCHHHHHHhh
Q 013173 379 VHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN-GFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 379 ~~~~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~-g~~~~~iHg~~~q~eR~~~l 447 (448)
+....|...|.++|...... +.++||||+++..++.|++.|... |+++..+||++++.+|.+++
T Consensus 92 ~~~s~K~~~L~~ll~~~~~~-----~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i 156 (271)
T 1z5z_A 92 VRRSGKMIRTMEIIEEALDE-----GDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDII 156 (271)
T ss_dssp STTCHHHHHHHHHHHHHHHT-----TCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHhC-----CCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHH
Confidence 45678999999999876432 678999999999999999999885 99999999999999999875
No 102
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.10 E-value=0.0016 Score=57.05 Aligned_cols=19 Identities=32% Similarity=0.424 Sum_probs=16.6
Q ss_pred CCCCeeEEccCCCCccchh
Q 013173 181 GGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~ 199 (448)
.++.+++.+|+|+|||...
T Consensus 37 ~g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp GCCEEEECCSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4788999999999999854
No 103
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=96.94 E-value=0.0071 Score=59.83 Aligned_cols=71 Identities=17% Similarity=0.065 Sum_probs=55.1
Q ss_pred CCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013173 167 KPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF 246 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~ 246 (448)
.++|+|+..+..+...+-+++..+-+.|||.+....++..++.. .+..+++++||++-|..+++.++.+
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~-----------~g~~v~~vA~t~~qA~~vf~~i~~m 231 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN-----------KDKAVGILAHKGSMSAEVLDRTKQA 231 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSS-----------SSCEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhC-----------CCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 68999999998765556689999999999998766665444321 1345999999999999888888876
Q ss_pred cc
Q 013173 247 SY 248 (448)
Q Consensus 247 ~~ 248 (448)
..
T Consensus 232 i~ 233 (385)
T 2o0j_A 232 IE 233 (385)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 104
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.48 E-value=0.017 Score=60.51 Aligned_cols=72 Identities=17% Similarity=0.071 Sum_probs=56.1
Q ss_pred CCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013173 167 KPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF 246 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~ 246 (448)
.++|+|+..+..+...+-+++..+-++|||.+...-++..+...+ +..+++++|+++.|..+++.++.+
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~-----------~~~i~~va~t~~qA~~~~~~i~~~ 231 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNK-----------DKAVGILAHKGSMSAEVLDRTKQA 231 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSS-----------SCEEEEEESSHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCC-----------CCeEEEEECCHHHHHHHHHHHHHH
Confidence 479999999987655677999999999999987655554443321 235999999999999999888877
Q ss_pred ccc
Q 013173 247 SYQ 249 (448)
Q Consensus 247 ~~~ 249 (448)
...
T Consensus 232 i~~ 234 (592)
T 3cpe_A 232 IEL 234 (592)
T ss_dssp HTT
T ss_pred HHh
Confidence 543
No 105
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.30 E-value=0.0089 Score=50.79 Aligned_cols=19 Identities=21% Similarity=0.440 Sum_probs=16.7
Q ss_pred CCCCeeEEccCCCCccchh
Q 013173 181 GGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~ 199 (448)
.++.+++.+++|+|||...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp CCSEEEEESSSTTTTCHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 6788999999999999853
No 106
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.14 E-value=0.024 Score=54.57 Aligned_cols=43 Identities=2% Similarity=0.041 Sum_probs=26.0
Q ss_pred CCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccC
Q 013173 296 QMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATF 342 (448)
Q Consensus 296 ~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~ 342 (448)
....+|||||+|.|.+. ..+..+++.... .....-+|+.++|+
T Consensus 131 ~~~~ii~lDE~d~l~~q---~~L~~l~~~~~~-~~s~~~vI~i~n~~ 173 (318)
T 3te6_A 131 KRKTLILIQNPENLLSE---KILQYFEKWISS-KNSKLSIICVGGHN 173 (318)
T ss_dssp SCEEEEEEECCSSSCCT---HHHHHHHHHHHC-SSCCEEEEEECCSS
T ss_pred CCceEEEEecHHHhhcc---hHHHHHHhcccc-cCCcEEEEEEecCc
Confidence 44568999999999832 344445443211 12345567778776
No 107
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.13 E-value=0.013 Score=58.84 Aligned_cols=45 Identities=24% Similarity=0.280 Sum_probs=33.1
Q ss_pred CCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013173 183 RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK 245 (448)
Q Consensus 183 ~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~ 245 (448)
+-.++.++.|||||....- ++.. ...+|++||++++..+.+.+.+
T Consensus 162 ~v~~I~G~aGsGKTt~I~~-----~~~~-------------~~~lVlTpT~~aa~~l~~kl~~ 206 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEILS-----RVNF-------------EEDLILVPGRQAAEMIRRRANA 206 (446)
T ss_dssp EEEEEEECTTSCHHHHHHH-----HCCT-------------TTCEEEESCHHHHHHHHHHHTT
T ss_pred cEEEEEcCCCCCHHHHHHH-----Hhcc-------------CCeEEEeCCHHHHHHHHHHhhh
Confidence 3478999999999996421 1111 1269999999999988887754
No 108
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.71 E-value=0.064 Score=49.93 Aligned_cols=50 Identities=20% Similarity=0.464 Sum_probs=29.3
Q ss_pred CCeeEEEEcCCcccccC-----CCHHH-HHHHHHHcCCCCCCCcEEEEEeccCchH
Q 013173 296 QMIRYLALDEADRMLDM-----GFEPQ-IRKIVQQMDMPPPGMRQTMLFSATFPKE 345 (448)
Q Consensus 296 ~~v~~lVlDEah~ll~~-----gf~~~-i~~i~~~l~~~~~~~~q~i~~SAT~~~~ 345 (448)
....+|+|||+|.|+.. .+... +..+...++...+...+++++.+|-..+
T Consensus 123 ~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~ 178 (272)
T 1d2n_A 123 SQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKD 178 (272)
T ss_dssp SSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHH
T ss_pred cCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChh
Confidence 34678999999998532 12233 3334444543333455677777776554
No 109
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.66 E-value=0.028 Score=53.87 Aligned_cols=18 Identities=22% Similarity=0.368 Sum_probs=15.7
Q ss_pred CCCeeEEccCCCCccchh
Q 013173 182 GRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 182 g~d~lv~a~TGsGKT~~~ 199 (448)
+..+++.+|+|+|||...
T Consensus 37 ~~~lll~G~~GtGKT~la 54 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLL 54 (324)
T ss_dssp CSSEEEECSSSSSHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 468999999999999864
No 110
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.63 E-value=0.029 Score=54.66 Aligned_cols=19 Identities=32% Similarity=0.373 Sum_probs=16.2
Q ss_pred CCCCeeEEccCCCCccchh
Q 013173 181 GGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~ 199 (448)
.+..+++.+|+|+|||...
T Consensus 43 ~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCCEEECBCTTSSHHHHH
T ss_pred CCCcEEEECCCCCCHHHHH
Confidence 3567999999999999864
No 111
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.60 E-value=0.0059 Score=55.39 Aligned_cols=19 Identities=21% Similarity=0.302 Sum_probs=16.4
Q ss_pred CCCCeeEEccCCCCccchh
Q 013173 181 GGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~ 199 (448)
.++.+++.+++|+|||...
T Consensus 51 ~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp SCSEEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4678999999999999854
No 112
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.50 E-value=0.034 Score=49.29 Aligned_cols=40 Identities=15% Similarity=0.039 Sum_probs=25.5
Q ss_pred CCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcH
Q 013173 181 GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTR 233 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr 233 (448)
.|+=.++++++|+|||++.+- ++.++... +-+++++.|..
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~-~a~r~~~~------------g~kV~v~k~~~ 46 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIR-RIRRAKIA------------KQKIQVFKPEI 46 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHH-HHHHHHHT------------TCCEEEEEEC-
T ss_pred CCEEEEEECCCCCcHHHHHHH-HHHHHHHC------------CCEEEEEEecc
Confidence 355578999999999987443 33333221 22488888874
No 113
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.48 E-value=0.21 Score=44.00 Aligned_cols=17 Identities=35% Similarity=0.503 Sum_probs=14.6
Q ss_pred CCeeEEccCCCCccchh
Q 013173 183 RDLMACAQTGSGKTAAF 199 (448)
Q Consensus 183 ~d~lv~a~TGsGKT~~~ 199 (448)
..+++.+++|+|||...
T Consensus 39 ~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATA 55 (226)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 46999999999999853
No 114
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.40 E-value=0.034 Score=48.89 Aligned_cols=39 Identities=15% Similarity=0.101 Sum_probs=24.7
Q ss_pred CCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcH
Q 013173 182 GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTR 233 (448)
Q Consensus 182 g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr 233 (448)
|+-.++.++.|+|||+..+- ++..+... +-+++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~-~~~~~~~~------------g~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLS-FVEIYKLG------------KKKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHH-HHHHHHHT------------TCEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHHH-HHHHHHHC------------CCeEEEEeecc
Confidence 55678999999999997533 22222221 12478888874
No 115
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.17 E-value=0.054 Score=54.54 Aligned_cols=45 Identities=13% Similarity=0.318 Sum_probs=26.2
Q ss_pred CeeEEEEcCCcccccC-CCHHHHHHHHHHcCCCCCCCcEEEEEeccCch
Q 013173 297 MIRYLALDEADRMLDM-GFEPQIRKIVQQMDMPPPGMRQTMLFSATFPK 344 (448)
Q Consensus 297 ~v~~lVlDEah~ll~~-gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~ 344 (448)
..++|+|||+|.+... .....+..+++.+. ....++|+.|...+.
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~---~~~~~iIitt~~~~~ 239 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELH---DSGKQIVICSDREPQ 239 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHH---TTTCEEEEEESSCGG
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHH---HCCCeEEEEECCCHH
Confidence 4678999999998753 23344555555442 234556654443333
No 116
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.14 E-value=0.015 Score=54.57 Aligned_cols=53 Identities=17% Similarity=0.125 Sum_probs=29.7
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCCHHHHhHHhh--HhCCCCeeEEccCCCCccchh
Q 013173 145 NTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPI--SIGGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 145 ~~f~~l~L~~~l~~~l~~~~~~~pt~~Q~~~i~~--i~~g~d~lv~a~TGsGKT~~~ 199 (448)
..|+++.-.+..++.+...-. .|. .....+.. +...+.+++.+|+|+|||...
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~~-~~~-~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVVE-LPL-KHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHTH-HHH-HCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHH-HHh-hCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 457777666666666654210 000 00011111 124577999999999999854
No 117
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=95.07 E-value=0.027 Score=59.42 Aligned_cols=112 Identities=23% Similarity=0.307 Sum_probs=73.3
Q ss_pred CCCHHHHhHHhhHhC--CCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q 013173 167 KPTPVQRHAIPISIG--GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAK 244 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~~--g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~ 244 (448)
.+|.-|.+++..++. ....++.|.-|.|||++.-+.+ ..+. ..++|.+|+.+-+..+.+.+.
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~-a~~~---------------~~~~vtAP~~~a~~~l~~~~~ 238 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLI-SRIA---------------GRAIVTAPAKASTDVLAQFAG 238 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHH-HHSS---------------SCEEEECSSCCSCHHHHHHHG
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHH-HHHH---------------hCcEEECCCHHHHHHHHHHhh
Confidence 689999999987775 3347899999999997654433 2221 126999999998776554433
Q ss_pred HhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcccccCCCHHHHHHHHHH
Q 013173 245 KFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQ 324 (448)
Q Consensus 245 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~ 324 (448)
+ .|-+..|..+.. .+...++||||||=.+-- +.+..++..
T Consensus 239 ~-----------------------------~i~~~~Pd~~~~-------~~~~~dlliVDEAAaIp~----pll~~ll~~ 278 (671)
T 2zpa_A 239 E-----------------------------KFRFIAPDALLA-------SDEQADWLVVDEAAAIPA----PLLHQLVSR 278 (671)
T ss_dssp G-----------------------------GCCBCCHHHHHH-------SCCCCSEEEEETGGGSCH----HHHHHHHTT
T ss_pred C-----------------------------CeEEeCchhhhh-------CcccCCEEEEEchhcCCH----HHHHHHHhh
Confidence 2 133445655331 234588999999986633 566666653
Q ss_pred cCCCCCCCcEEEEEeccC
Q 013173 325 MDMPPPGMRQTMLFSATF 342 (448)
Q Consensus 325 l~~~~~~~~q~i~~SAT~ 342 (448)
. ..++||.|.
T Consensus 279 ~--------~~v~~~tTv 288 (671)
T 2zpa_A 279 F--------PRTLLTTTV 288 (671)
T ss_dssp S--------SEEEEEEEB
T ss_pred C--------CeEEEEecC
Confidence 3 146777774
No 118
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.98 E-value=0.024 Score=51.56 Aligned_cols=92 Identities=13% Similarity=0.141 Sum_probs=50.4
Q ss_pred CCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECC
Q 013173 181 GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGG 260 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg 260 (448)
.|.=+++.+++|+|||++.+-- +..+... +-+++++.|...- . -...+....++..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~-~~r~~~~------------g~kVli~~~~~d~--r---~~~~i~srlG~~~------ 66 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRR-LHRLEYA------------DVKYLVFKPKIDT--R---SIRNIQSRTGTSL------ 66 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHH-HHHHHHT------------TCCEEEEEECCCG--G---GCSSCCCCCCCSS------
T ss_pred CcEEEEEECCCCCcHHHHHHHH-HHHHHhc------------CCEEEEEEeccCc--h---HHHHHHHhcCCCc------
Confidence 4556889999999999975433 3333222 1247888765431 0 0011222212110
Q ss_pred CChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcccc
Q 013173 261 APINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRML 310 (448)
Q Consensus 261 ~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll 310 (448)
..+.+.+...+++.+.... .-...++||||||+.+.
T Consensus 67 -------------~~~~~~~~~~i~~~i~~~~-~~~~~dvViIDEaQ~l~ 102 (223)
T 2b8t_A 67 -------------PSVEVESAPEILNYIMSNS-FNDETKVIGIDEVQFFD 102 (223)
T ss_dssp -------------CCEEESSTHHHHHHHHSTT-SCTTCCEEEECSGGGSC
T ss_pred -------------cccccCCHHHHHHHHHHHh-hCCCCCEEEEecCccCc
Confidence 1233556666766665432 23457899999999753
No 119
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=94.82 E-value=0.09 Score=48.30 Aligned_cols=18 Identities=22% Similarity=0.276 Sum_probs=15.5
Q ss_pred CCCeeEEccCCCCccchh
Q 013173 182 GRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 182 g~d~lv~a~TGsGKT~~~ 199 (448)
.+.+++.+|+|+|||...
T Consensus 39 ~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCEEEEESCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 467999999999999854
No 120
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.77 E-value=0.025 Score=53.63 Aligned_cols=18 Identities=22% Similarity=0.294 Sum_probs=15.5
Q ss_pred CCCeeEEccCCCCccchh
Q 013173 182 GRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 182 g~d~lv~a~TGsGKT~~~ 199 (448)
+.++++.+|+|+|||...
T Consensus 67 ~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 457999999999999864
No 121
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=94.56 E-value=0.04 Score=58.59 Aligned_cols=70 Identities=19% Similarity=0.126 Sum_probs=51.9
Q ss_pred CCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013173 167 KPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF 246 (448)
Q Consensus 167 ~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~ 246 (448)
.+++-|++++.. ....++|.|..|||||.+..-=+...+...+. ....+|+|+.|+..+.++.+.+.++
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~---------~~~~IL~lTfT~~Aa~em~~Rl~~~ 70 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGY---------QARHIAAVTFTNKAAREMKERVGQT 70 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCC---------CGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCC---------CHHHeEEEeccHHHHHHHHHHHHHH
Confidence 578999999975 36789999999999999754333333322221 1134999999999999999999876
Q ss_pred c
Q 013173 247 S 247 (448)
Q Consensus 247 ~ 247 (448)
.
T Consensus 71 l 71 (673)
T 1uaa_A 71 L 71 (673)
T ss_dssp S
T ss_pred c
Confidence 4
No 122
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=94.55 E-value=0.037 Score=63.05 Aligned_cols=71 Identities=25% Similarity=0.266 Sum_probs=52.0
Q ss_pred CCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013173 166 VKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK 245 (448)
Q Consensus 166 ~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~ 245 (448)
.++|+-|..+|..- +++++|.|.-|||||.+.+-=++..+..... ....-++|||++|+..+..+.+.+..
T Consensus 9 ~~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~-------~~~~~~il~~Tft~~aa~e~~~ri~~ 79 (1232)
T 3u4q_A 9 STWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEEN-------PIDVDRLLVVTFTNASAAEMKHRIAE 79 (1232)
T ss_dssp -CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSS-------CCCGGGEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCC-------CCCccceEEEeccHHHHHHHHHHHHH
Confidence 36899999999763 8899999999999999855445544433210 01123599999999999998877765
No 123
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.52 E-value=0.13 Score=51.52 Aligned_cols=55 Identities=15% Similarity=0.227 Sum_probs=38.6
Q ss_pred CCeeEEEEcCCcccc---cCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhh
Q 013173 296 QMIRYLALDEADRML---DMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFL 354 (448)
Q Consensus 296 ~~v~~lVlDEah~ll---~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l 354 (448)
...++||||++-++. +..+..++..+...+ .+..-++.++|+...+....+..|.
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~----~pd~vlLVlDa~~gq~a~~~a~~f~ 235 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVL----KPDDVILVIDASIGQKAYDLASRFH 235 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHH----CCSEEEEEEEGGGGGGGHHHHHHHH
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhh----CCcceEEEEeCccchHHHHHHHHHh
Confidence 467889999998653 334566777777776 3445578888887766666666664
No 124
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.36 E-value=0.054 Score=51.80 Aligned_cols=19 Identities=21% Similarity=0.350 Sum_probs=16.4
Q ss_pred CCCeeEEccCCCCccchhh
Q 013173 182 GRDLMACAQTGSGKTAAFC 200 (448)
Q Consensus 182 g~d~lv~a~TGsGKT~~~~ 200 (448)
++++++.+++|+|||....
T Consensus 152 ~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5789999999999998543
No 125
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.26 E-value=0.054 Score=52.68 Aligned_cols=18 Identities=33% Similarity=0.527 Sum_probs=15.8
Q ss_pred CCCeeEEccCCCCccchh
Q 013173 182 GRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 182 g~d~lv~a~TGsGKT~~~ 199 (448)
++.+++.+++|+|||...
T Consensus 45 ~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCEEEEECTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 567999999999999854
No 126
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.12 E-value=0.4 Score=45.56 Aligned_cols=42 Identities=14% Similarity=0.162 Sum_probs=24.2
Q ss_pred CCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccC
Q 013173 296 QMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATF 342 (448)
Q Consensus 296 ~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~ 342 (448)
...++|||||+|.+........+..+++.. +...++|+ +++-
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~----~~~~~iI~-~~n~ 145 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAY----SSNCSIII-TANN 145 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHH----GGGCEEEE-EESS
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhC----CCCcEEEE-EeCC
Confidence 467899999999986212234445555543 33444444 4443
No 127
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=94.10 E-value=0.077 Score=56.96 Aligned_cols=71 Identities=20% Similarity=0.179 Sum_probs=51.7
Q ss_pred CCCCHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013173 166 VKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK 245 (448)
Q Consensus 166 ~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~ 245 (448)
..+++-|++++.. ....++|.|..|||||.+..-=+. +++.... .....+|+|+.|+..|.++.+.+.+
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~-~ll~~~~--------~~p~~IL~vTFTnkAA~Em~~Rl~~ 78 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIA-YLMAEKH--------VAPWNILAITFTNKAAREMRERVQS 78 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHH-HHHHTTC--------CCGGGEEEEESSHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHH-HHHHhcC--------CCHHHeEEEeccHHHHHHHHHHHHH
Confidence 4689999999875 356899999999999997443333 3333210 1112499999999999999988877
Q ss_pred hc
Q 013173 246 FS 247 (448)
Q Consensus 246 ~~ 247 (448)
+.
T Consensus 79 ~l 80 (724)
T 1pjr_A 79 LL 80 (724)
T ss_dssp HH
T ss_pred Hh
Confidence 63
No 128
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.10 E-value=0.34 Score=43.11 Aligned_cols=16 Identities=25% Similarity=0.345 Sum_probs=14.1
Q ss_pred CeeEEccCCCCccchh
Q 013173 184 DLMACAQTGSGKTAAF 199 (448)
Q Consensus 184 d~lv~a~TGsGKT~~~ 199 (448)
.+++.+++|+|||...
T Consensus 47 ~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIA 62 (250)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999853
No 129
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=94.07 E-value=0.47 Score=45.60 Aligned_cols=33 Identities=27% Similarity=0.297 Sum_probs=23.6
Q ss_pred CCHHHHhHHhhHh----CCC---CeeEEccCCCCccchhh
Q 013173 168 PTPVQRHAIPISI----GGR---DLMACAQTGSGKTAAFC 200 (448)
Q Consensus 168 pt~~Q~~~i~~i~----~g~---d~lv~a~TGsGKT~~~~ 200 (448)
..|+|..++..+. +++ -+++.+|.|+|||....
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~ 42 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIY 42 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHH
Confidence 3577777765443 443 38999999999998654
No 130
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=93.96 E-value=0.15 Score=49.76 Aligned_cols=16 Identities=25% Similarity=0.426 Sum_probs=14.5
Q ss_pred CeeEEccCCCCccchh
Q 013173 184 DLMACAQTGSGKTAAF 199 (448)
Q Consensus 184 d~lv~a~TGsGKT~~~ 199 (448)
.+++.+++|+|||...
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 7999999999999964
No 131
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=93.86 E-value=0.13 Score=44.05 Aligned_cols=18 Identities=28% Similarity=0.377 Sum_probs=15.5
Q ss_pred CCCeeEEccCCCCccchh
Q 013173 182 GRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 182 g~d~lv~a~TGsGKT~~~ 199 (448)
.+.+++++++|+|||...
T Consensus 43 ~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp SCEEEEECCTTSCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 467999999999999864
No 132
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.67 E-value=0.15 Score=44.93 Aligned_cols=17 Identities=29% Similarity=0.376 Sum_probs=15.3
Q ss_pred CCeeEEccCCCCccchh
Q 013173 183 RDLMACAQTGSGKTAAF 199 (448)
Q Consensus 183 ~d~lv~a~TGsGKT~~~ 199 (448)
+.+++.+++|+|||...
T Consensus 55 ~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 78999999999999864
No 133
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.67 E-value=0.088 Score=45.20 Aligned_cols=18 Identities=28% Similarity=0.372 Sum_probs=15.6
Q ss_pred CCCeeEEccCCCCccchh
Q 013173 182 GRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 182 g~d~lv~a~TGsGKT~~~ 199 (448)
.+.+++.+++|+|||...
T Consensus 43 ~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp SCEEEEESCGGGCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 467999999999999854
No 134
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=93.62 E-value=0.087 Score=47.43 Aligned_cols=40 Identities=18% Similarity=0.208 Sum_probs=24.5
Q ss_pred CCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHH
Q 013173 182 GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRE 234 (448)
Q Consensus 182 g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptre 234 (448)
|+=.+++++.|+|||++.+--+.. +... +-+++|+.|...
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r-~~~~------------g~kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRR-TQFA------------KQHAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHH-HHHT------------TCCEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHHHHHHHH-HHHC------------CCEEEEEEeccC
Confidence 444678999999999875443333 2221 224899888764
No 135
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=93.59 E-value=0.49 Score=40.13 Aligned_cols=72 Identities=19% Similarity=0.242 Sum_probs=53.9
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHH---hc-CccEEEeChHHHHHHHhcccccCCCeeE
Q 013173 225 LALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLREL---ER-GVDILVATPGRLVDLLERARVSLQMIRY 300 (448)
Q Consensus 225 ~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~~-~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~ 300 (448)
++||.++++..+..+.+.+.+. ++.+..++|+.+..+....+ .. ..+|||+|. .+ ...+++..+++
T Consensus 37 ~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~Gld~~~~~~ 106 (163)
T 2hjv_A 37 SCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD-----VA-ARGIDIENISL 106 (163)
T ss_dssp SEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GG-TTTCCCSCCSE
T ss_pred cEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hh-hcCCchhcCCE
Confidence 4999999999999999998874 67888999998766554333 33 478999993 22 23567888998
Q ss_pred EEEcCC
Q 013173 301 LALDEA 306 (448)
Q Consensus 301 lVlDEa 306 (448)
||.-+.
T Consensus 107 Vi~~~~ 112 (163)
T 2hjv_A 107 VINYDL 112 (163)
T ss_dssp EEESSC
T ss_pred EEEeCC
Confidence 887443
No 136
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=93.55 E-value=0.3 Score=46.21 Aligned_cols=16 Identities=38% Similarity=0.509 Sum_probs=14.4
Q ss_pred CeeEEccCCCCccchh
Q 013173 184 DLMACAQTGSGKTAAF 199 (448)
Q Consensus 184 d~lv~a~TGsGKT~~~ 199 (448)
++++.+|+|+|||...
T Consensus 48 ~~ll~G~~G~GKT~la 63 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAA 63 (327)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred eEEEECcCCCCHHHHH
Confidence 6999999999999864
No 137
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=93.50 E-value=0.1 Score=50.07 Aligned_cols=49 Identities=14% Similarity=0.253 Sum_probs=28.5
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCCHHHHhHHhhHh-----CCCCeeEEccCCCCccchh
Q 013173 145 NTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISI-----GGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 145 ~~f~~l~L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~-----~g~d~lv~a~TGsGKT~~~ 199 (448)
.+|+++.-.+.+++.|.+.-. .|.+ .|.+. ..+.+++.+|+|+|||+..
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~---~p~~---~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVI---LPIK---FPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHH---HHHH---CGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHH---HHHh---CHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 467887655666665553200 0000 01221 2367999999999999854
No 138
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.47 E-value=0.35 Score=46.56 Aligned_cols=42 Identities=14% Similarity=0.176 Sum_probs=26.6
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchh
Q 013173 146 TFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 146 ~f~~l~L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~ 199 (448)
+|+++--.+.+.+.+...-+.. -...++++.+|+|+|||...
T Consensus 12 ~~~~~vg~~~~~~~l~~~~~~~------------~~~~~~ll~Gp~G~GKTtl~ 53 (354)
T 1sxj_E 12 SLNALSHNEELTNFLKSLSDQP------------RDLPHLLLYGPNGTGKKTRC 53 (354)
T ss_dssp SGGGCCSCHHHHHHHHTTTTCT------------TCCCCEEEECSTTSSHHHHH
T ss_pred CHHHhcCCHHHHHHHHHHHhhC------------CCCCeEEEECCCCCCHHHHH
Confidence 4666655666666665431000 12234999999999999864
No 139
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=93.46 E-value=2.4 Score=36.93 Aligned_cols=72 Identities=24% Similarity=0.297 Sum_probs=53.8
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHH---hc-CccEEEeChHHHHHHHhcccccCCCee
Q 013173 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLREL---ER-GVDILVATPGRLVDLLERARVSLQMIR 299 (448)
Q Consensus 224 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~~-~~~Ilv~Tp~~l~~~l~~~~~~l~~v~ 299 (448)
+++||.+++++-+..+.+.+++. ++.+..++|+.+..+....+ .. ..+|||+|. .+. ..+++..++
T Consensus 55 ~~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----~~~-~Gldi~~v~ 124 (191)
T 2p6n_A 55 PPVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD-----VAS-KGLDFPAIQ 124 (191)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECH-----HHH-TTCCCCCCS
T ss_pred CCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcC-----chh-cCCCcccCC
Confidence 35999999999999999998874 57888899998865554333 22 479999992 333 346788899
Q ss_pred EEEEcC
Q 013173 300 YLALDE 305 (448)
Q Consensus 300 ~lVlDE 305 (448)
+||.=+
T Consensus 125 ~VI~~d 130 (191)
T 2p6n_A 125 HVINYD 130 (191)
T ss_dssp EEEESS
T ss_pred EEEEeC
Confidence 888743
No 140
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=93.37 E-value=0.049 Score=52.31 Aligned_cols=49 Identities=12% Similarity=0.187 Sum_probs=29.5
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCCHHHHhHHhhHh-----CCCCeeEEccCCCCccchh
Q 013173 145 NTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISI-----GGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 145 ~~f~~l~L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~-----~g~d~lv~a~TGsGKT~~~ 199 (448)
.+|+++.-.+.+++.+...-. .| ...|.+. ..+.+++.+|+|+|||...
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~---~~---~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVI---LP---VKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTH---HH---HHCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCHHHhcChHHHHHHHHHHHH---HH---HhCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 457888766667766654210 01 0111111 2357999999999999854
No 141
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.19 E-value=0.18 Score=49.09 Aligned_cols=18 Identities=28% Similarity=0.169 Sum_probs=15.4
Q ss_pred CCCeeEEccCCCCccchh
Q 013173 182 GRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 182 g~d~lv~a~TGsGKT~~~ 199 (448)
.+.+++.+++|+|||...
T Consensus 45 ~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 356999999999999864
No 142
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=92.66 E-value=0.21 Score=44.27 Aligned_cols=19 Identities=21% Similarity=0.205 Sum_probs=15.5
Q ss_pred CCCCeeEEccCCCCccchh
Q 013173 181 GGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~ 199 (448)
.++=.++.++.|||||...
T Consensus 19 ~g~l~fiyG~MgsGKTt~L 37 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTEL 37 (195)
T ss_dssp CCEEEEEEECTTSCHHHHH
T ss_pred ceEEEEEECCCCCcHHHHH
Confidence 3566889999999999653
No 143
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=92.63 E-value=0.2 Score=45.06 Aligned_cols=41 Identities=12% Similarity=0.074 Sum_probs=25.3
Q ss_pred CCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHH
Q 013173 181 GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRE 234 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptre 234 (448)
.|.=.+++++.|+|||+..+- .+.++... +.+++|+.|...
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr-~~~r~~~~------------g~kvli~kp~~D 67 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIR-RLRRGIYA------------KQKVVVFKPAID 67 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHH-HHHHHHHT------------TCCEEEEEEC--
T ss_pred CceEEEEECCCCCCHHHHHHH-HHHHHHHc------------CCceEEEEeccC
Confidence 455678999999999986433 33333221 234888888553
No 144
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.31 E-value=0.42 Score=48.99 Aligned_cols=41 Identities=17% Similarity=0.127 Sum_probs=25.2
Q ss_pred CCeeEEEEcCCcccccC--CCHHHHHHHHHHcCCCCCCCcEEEEEeccC
Q 013173 296 QMIRYLALDEADRMLDM--GFEPQIRKIVQQMDMPPPGMRQTMLFSATF 342 (448)
Q Consensus 296 ~~v~~lVlDEah~ll~~--gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~ 342 (448)
..-.+|||||+|.|... ++...+..+++.. ...+|+.+++.
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~------~~~iIli~~~~ 189 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT------STPLILICNER 189 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC------SSCEEEEESCT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHhc------CCCEEEEEcCC
Confidence 34578999999998653 2334555555443 23467766664
No 145
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=92.31 E-value=0.51 Score=40.52 Aligned_cols=71 Identities=17% Similarity=0.211 Sum_probs=53.7
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHH---hc-CccEEEeChHHHHHHHhcccccCCCee
Q 013173 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLREL---ER-GVDILVATPGRLVDLLERARVSLQMIR 299 (448)
Q Consensus 224 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~~-~~~Ilv~Tp~~l~~~l~~~~~~l~~v~ 299 (448)
.++||.++++..+..+++.+.+. ++.+..++|+.+..+....+ .. ..+|||+|. .+ ...+++..+.
T Consensus 35 ~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~-~~Gid~~~~~ 104 (175)
T 2rb4_A 35 GQAIIFCQTRRNAKWLTVEMIQD----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN-----VC-ARGIDVKQVT 104 (175)
T ss_dssp SEEEEECSCHHHHHHHHHHHHTT----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC-----SC-CTTTCCTTEE
T ss_pred CCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec-----ch-hcCCCcccCC
Confidence 46999999999999999988874 67888999998866554333 33 479999993 22 2356888999
Q ss_pred EEEEc
Q 013173 300 YLALD 304 (448)
Q Consensus 300 ~lVlD 304 (448)
+||.=
T Consensus 105 ~Vi~~ 109 (175)
T 2rb4_A 105 IVVNF 109 (175)
T ss_dssp EEEES
T ss_pred EEEEe
Confidence 99853
No 146
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=92.24 E-value=0.29 Score=44.54 Aligned_cols=40 Identities=13% Similarity=0.051 Sum_probs=25.8
Q ss_pred CCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcH
Q 013173 181 GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTR 233 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~Ptr 233 (448)
.|+=.+++++.|+|||+..+--+..... .+-+++++-|..
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~-------------~g~kvli~kp~~ 57 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQI-------------AQYKCLVIKYAK 57 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHT-------------TTCCEEEEEETT
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHH-------------CCCeEEEEeecC
Confidence 3566788999999999875443333221 123488887765
No 147
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.23 E-value=0.47 Score=45.59 Aligned_cols=38 Identities=18% Similarity=0.383 Sum_probs=22.8
Q ss_pred CCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEE
Q 013173 296 QMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLF 338 (448)
Q Consensus 296 ~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~ 338 (448)
...+++|+||+|.|... ....+.++++.. +....+++.
T Consensus 109 ~~~~viiiDe~~~l~~~-~~~~L~~~le~~----~~~~~~il~ 146 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNA-AQNALRRVIERY----TKNTRFCVL 146 (340)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHT----TTTEEEEEE
T ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhcC----CCCeEEEEE
Confidence 45789999999988542 223455555543 444444443
No 148
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=92.21 E-value=0.62 Score=41.55 Aligned_cols=69 Identities=17% Similarity=0.247 Sum_probs=53.0
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHH---hc-CccEEEeChHHHHHHHhcccccCCCeeE
Q 013173 225 LALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLREL---ER-GVDILVATPGRLVDLLERARVSLQMIRY 300 (448)
Q Consensus 225 ~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~~-~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~ 300 (448)
++||.+++++-+..+.+.+.+. ++.+..++|+.+..++...+ .. ..+|||||. .+ ...+++..+.+
T Consensus 33 ~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~-~~Gidi~~v~~ 102 (212)
T 3eaq_A 33 RAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD-----VA-ARGLDIPQVDL 102 (212)
T ss_dssp CEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT-----TT-TCSSSCCCBSE
T ss_pred eEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC-----hh-hcCCCCccCcE
Confidence 4999999999999999988874 67888999998876655433 33 378999993 22 34567888998
Q ss_pred EEE
Q 013173 301 LAL 303 (448)
Q Consensus 301 lVl 303 (448)
||.
T Consensus 103 Vi~ 105 (212)
T 3eaq_A 103 VVH 105 (212)
T ss_dssp EEE
T ss_pred EEE
Confidence 874
No 149
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=92.19 E-value=0.87 Score=38.59 Aligned_cols=73 Identities=18% Similarity=0.255 Sum_probs=53.7
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHH---hc-CccEEEeChHHHHHHHhcccccCCCee
Q 013173 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLREL---ER-GVDILVATPGRLVDLLERARVSLQMIR 299 (448)
Q Consensus 224 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~~-~~~Ilv~Tp~~l~~~l~~~~~~l~~v~ 299 (448)
.++||.+++++-+..+...+.+. ++.+..++|+.+..+....+ .. ...|||+|. .+ ...+++..++
T Consensus 31 ~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~G~d~~~~~ 100 (165)
T 1fuk_A 31 TQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----LL-ARGIDVQQVS 100 (165)
T ss_dssp SCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG-----GG-TTTCCCCSCS
T ss_pred CCEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC-----hh-hcCCCcccCC
Confidence 35999999999999999988874 57788899998866554333 33 478999993 22 2346788888
Q ss_pred EEEEcCC
Q 013173 300 YLALDEA 306 (448)
Q Consensus 300 ~lVlDEa 306 (448)
+||.-+.
T Consensus 101 ~Vi~~~~ 107 (165)
T 1fuk_A 101 LVINYDL 107 (165)
T ss_dssp EEEESSC
T ss_pred EEEEeCC
Confidence 8887443
No 150
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=92.16 E-value=0.13 Score=50.08 Aligned_cols=18 Identities=17% Similarity=0.313 Sum_probs=15.5
Q ss_pred CCCeeEEccCCCCccchh
Q 013173 182 GRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 182 g~d~lv~a~TGsGKT~~~ 199 (448)
.+.+++.+|+|+|||+..
T Consensus 84 ~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCCEEEECSTTSCHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 357999999999999864
No 151
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=92.09 E-value=0.21 Score=50.17 Aligned_cols=51 Identities=12% Similarity=0.109 Sum_probs=29.0
Q ss_pred CCcccCCCCHHHHHHHHHCCC---CCCCHHHHhHHhhHhCCCCeeEEccCCCCccchh
Q 013173 145 NTFAEIDLGEALNLNIRRCKY---VKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 145 ~~f~~l~L~~~l~~~l~~~~~---~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~ 199 (448)
.+|+++.-.+.+.+.|...-. ..|.-++ ......+.+++.+|+|+|||+..
T Consensus 131 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~----~~~~~~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 131 VKWSDVAGLEGAKEALKEAVILPIKFPHLFT----GKRTPWRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CCGGGSCSCHHHHHHHHHHHTHHHHCTTTTS----GGGCCCSEEEEECSTTSSHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHhh----ccCCCCceEEEECCCCCCHHHHH
Confidence 467887655666666654210 0000000 01123467999999999999854
No 152
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=91.61 E-value=0.73 Score=42.12 Aligned_cols=52 Identities=17% Similarity=0.246 Sum_probs=27.8
Q ss_pred CCcccCCCCHHHHHHHHHCC--CCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchh
Q 013173 145 NTFAEIDLGEALNLNIRRCK--YVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 145 ~~f~~l~L~~~l~~~l~~~~--~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~ 199 (448)
..|+++.-.+.+++.+.+.- +..|..++... ....+.+++.+|+|+|||+..
T Consensus 9 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 9 TTFADVAGCDEAKEEVAELVEYLREPSRFQKLG---GKIPKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCGGGSCSCHHHHHHTHHHHHHHHCGGGC--------CCCCEEEEECCTTSCHHHHH
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcC---CCCCCeEEEECcCCCCHHHHH
Confidence 46777766666665554320 01111111100 012356999999999999854
No 153
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=91.57 E-value=3.2 Score=35.38 Aligned_cols=72 Identities=13% Similarity=0.085 Sum_probs=53.5
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHH---hc-CccEEEeChHHHHHHHhcccccCCCeeE
Q 013173 225 LALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLREL---ER-GVDILVATPGRLVDLLERARVSLQMIRY 300 (448)
Q Consensus 225 ~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~~-~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~ 300 (448)
++||.++++..+..+++.+... ++.+..++|+.+..+....+ .. ..+|||||.- -...+++..+.+
T Consensus 33 ~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~------~~~Gldi~~~~~ 102 (172)
T 1t5i_A 33 QVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL------FGRGMDIERVNI 102 (172)
T ss_dssp SEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSC------CSTTCCGGGCSE
T ss_pred cEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCc------hhcCcchhhCCE
Confidence 5999999999999999998874 67788889998866554333 33 4799999941 223467788888
Q ss_pred EEEcCC
Q 013173 301 LALDEA 306 (448)
Q Consensus 301 lVlDEa 306 (448)
||.-+.
T Consensus 103 Vi~~d~ 108 (172)
T 1t5i_A 103 AFNYDM 108 (172)
T ss_dssp EEESSC
T ss_pred EEEECC
Confidence 886443
No 154
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=91.48 E-value=0.38 Score=45.06 Aligned_cols=19 Identities=26% Similarity=0.387 Sum_probs=16.2
Q ss_pred CCCCeeEEccCCCCccchh
Q 013173 181 GGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~ 199 (448)
..+.+++.+|+|+|||+..
T Consensus 53 ~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CCSEEEEESSSSSCHHHHH
T ss_pred CCCeEEEECcCCCCHHHHH
Confidence 3578999999999999854
No 155
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=91.29 E-value=0.34 Score=48.76 Aligned_cols=17 Identities=24% Similarity=0.434 Sum_probs=14.9
Q ss_pred CCeeEEccCCCCccchh
Q 013173 183 RDLMACAQTGSGKTAAF 199 (448)
Q Consensus 183 ~d~lv~a~TGsGKT~~~ 199 (448)
..+++.+|+|+|||...
T Consensus 51 ~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLA 67 (447)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCcHHHHH
Confidence 46999999999999854
No 156
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=91.28 E-value=0.22 Score=47.13 Aligned_cols=19 Identities=21% Similarity=0.319 Sum_probs=16.3
Q ss_pred CCCCeeEEccCCCCccchh
Q 013173 181 GGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~ 199 (448)
.++.+++.+|+|+|||+..
T Consensus 48 ~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCSEEEEECSSSSSHHHHH
T ss_pred CCceEEEECCCCcCHHHHH
Confidence 4577999999999999854
No 157
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=91.17 E-value=0.39 Score=45.94 Aligned_cols=17 Identities=24% Similarity=0.360 Sum_probs=15.1
Q ss_pred CCeeEEccCCCCccchh
Q 013173 183 RDLMACAQTGSGKTAAF 199 (448)
Q Consensus 183 ~d~lv~a~TGsGKT~~~ 199 (448)
.++++.+++|+|||...
T Consensus 56 ~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLA 72 (338)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 57999999999999854
No 158
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=91.16 E-value=3.5 Score=39.56 Aligned_cols=76 Identities=12% Similarity=0.173 Sum_probs=57.7
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHH---hc-CccEEEeChHHHHHHHhcccccCCCe
Q 013173 223 YPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLREL---ER-GVDILVATPGRLVDLLERARVSLQMI 298 (448)
Q Consensus 223 ~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~~-~~~Ilv~Tp~~l~~~l~~~~~~l~~v 298 (448)
..++||.++++.-+..+++.++.. ++.+..++|+.+..+....+ .. ..+|||+|. +-...+++..+
T Consensus 243 ~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidip~~ 312 (395)
T 3pey_A 243 IGSSIIFVATKKTANVLYGKLKSE----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN------VLARGIDIPTV 312 (395)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG------GGSSSCCCTTE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhc----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC------hhhcCCCcccC
Confidence 356999999999999999998874 56788889998866554333 33 478999994 22345789999
Q ss_pred eEEEEcCCcc
Q 013173 299 RYLALDEADR 308 (448)
Q Consensus 299 ~~lVlDEah~ 308 (448)
++||.-+...
T Consensus 313 ~~Vi~~~~p~ 322 (395)
T 3pey_A 313 SMVVNYDLPT 322 (395)
T ss_dssp EEEEESSCCB
T ss_pred CEEEEcCCCC
Confidence 9999866654
No 159
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=91.06 E-value=0.44 Score=42.97 Aligned_cols=52 Identities=17% Similarity=0.212 Sum_probs=30.9
Q ss_pred CCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013173 181 GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF 246 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~ 246 (448)
.|.-+++.+++|+|||...+--+...+ ..+ -.++++. +.+...++.+.+..+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~-~~~------------~~v~~~~-~e~~~~~~~~~~~~~ 73 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGL-KMG------------EPGIYVA-LEEHPVQVRQNMAQF 73 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHH-HTT------------CCEEEEE-SSSCHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH-hcC------------CeEEEEE-ccCCHHHHHHHHHHc
Confidence 567799999999999996443333322 111 1266665 333445666666554
No 160
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=91.03 E-value=2.3 Score=41.20 Aligned_cols=72 Identities=19% Similarity=0.244 Sum_probs=54.8
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHH---hc-CccEEEeChHHHHHHHhcccccCCCee
Q 013173 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLREL---ER-GVDILVATPGRLVDLLERARVSLQMIR 299 (448)
Q Consensus 224 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~~-~~~Ilv~Tp~~l~~~l~~~~~~l~~v~ 299 (448)
.++||.++++.-+..+++.+.+. ++.+..++|+.+..+....+ .. ..+|||||. .+ ...+++..++
T Consensus 267 ~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~Gidip~~~ 336 (412)
T 3fht_A 267 AQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VC-ARGIDVEQVS 336 (412)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GG-TSSCCCTTEE
T ss_pred CCEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC-----cc-ccCCCccCCC
Confidence 46999999999999999999885 56788889998876554433 33 478999994 22 3457899999
Q ss_pred EEEEcC
Q 013173 300 YLALDE 305 (448)
Q Consensus 300 ~lVlDE 305 (448)
+||.-.
T Consensus 337 ~Vi~~~ 342 (412)
T 3fht_A 337 VVINFD 342 (412)
T ss_dssp EEEESS
T ss_pred EEEEEC
Confidence 988533
No 161
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=90.86 E-value=0.65 Score=45.57 Aligned_cols=18 Identities=33% Similarity=0.484 Sum_probs=15.9
Q ss_pred CCCeeEEccCCCCccchh
Q 013173 182 GRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 182 g~d~lv~a~TGsGKT~~~ 199 (448)
.+.+++.+++|+|||...
T Consensus 148 ~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CSEEEEESSTTSCHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 578999999999999854
No 162
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=90.80 E-value=0.14 Score=48.38 Aligned_cols=17 Identities=24% Similarity=0.141 Sum_probs=14.5
Q ss_pred CCeeEEccCCCCccchh
Q 013173 183 RDLMACAQTGSGKTAAF 199 (448)
Q Consensus 183 ~d~lv~a~TGsGKT~~~ 199 (448)
+.+++.+|+|+|||...
T Consensus 37 ~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQC 53 (293)
T ss_dssp SEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46889999999999854
No 163
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=90.70 E-value=3.2 Score=41.46 Aligned_cols=17 Identities=35% Similarity=0.454 Sum_probs=14.4
Q ss_pred CCeeEEccCCCCccchh
Q 013173 183 RDLMACAQTGSGKTAAF 199 (448)
Q Consensus 183 ~d~lv~a~TGsGKT~~~ 199 (448)
.-+++++++|+|||+..
T Consensus 101 ~vIlivG~~G~GKTTt~ 117 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTV 117 (443)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECcCCCCHHHHH
Confidence 35889999999999964
No 164
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=90.57 E-value=2 Score=37.29 Aligned_cols=71 Identities=14% Similarity=0.145 Sum_probs=44.4
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHH---HHHhc-CccEEEeChHHHHHHHhcccccCCCee
Q 013173 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQL---RELER-GVDILVATPGRLVDLLERARVSLQMIR 299 (448)
Q Consensus 224 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~---~~l~~-~~~Ilv~Tp~~l~~~l~~~~~~l~~v~ 299 (448)
.++||.++++.-+..+.+.++.. ++.+..++|+.+..+.. ..+.. ..+|||+|. .+. ..+++..+.
T Consensus 47 ~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~-~Gldi~~~~ 116 (185)
T 2jgn_A 47 SLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAA-RGLDISNVK 116 (185)
T ss_dssp SCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHHHHHHHHTSSSEEEEEC------------CCCSBS
T ss_pred CeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcC-----hhh-cCCCcccCC
Confidence 45999999999999999988874 67788888887654432 23333 478999993 222 245788888
Q ss_pred EEEEc
Q 013173 300 YLALD 304 (448)
Q Consensus 300 ~lVlD 304 (448)
+||.=
T Consensus 117 ~VI~~ 121 (185)
T 2jgn_A 117 HVINF 121 (185)
T ss_dssp EEEES
T ss_pred EEEEe
Confidence 88863
No 165
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=90.42 E-value=0.51 Score=42.47 Aligned_cols=23 Identities=17% Similarity=0.018 Sum_probs=18.3
Q ss_pred CCCCeeEEccCCCCccchhhhhH
Q 013173 181 GGRDLMACAQTGSGKTAAFCFPI 203 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~~lpi 203 (448)
.|.-+++.+++|+|||.....-+
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~ 45 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLA 45 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHH
Confidence 56779999999999999654433
No 166
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=90.28 E-value=0.52 Score=44.60 Aligned_cols=18 Identities=28% Similarity=0.289 Sum_probs=15.6
Q ss_pred CCCeeEEccCCCCccchh
Q 013173 182 GRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 182 g~d~lv~a~TGsGKT~~~ 199 (448)
...+++++++|+|||...
T Consensus 38 ~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCCEEECCTTCCCHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 468999999999999854
No 167
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=90.25 E-value=0.55 Score=41.55 Aligned_cols=52 Identities=17% Similarity=0.351 Sum_probs=33.9
Q ss_pred CCeeEEEEcCCcccccCCC--HHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHH
Q 013173 296 QMIRYLALDEADRMLDMGF--EPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLAS 351 (448)
Q Consensus 296 ~~v~~lVlDEah~ll~~gf--~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~ 351 (448)
..+++|||||+=..+..++ .+.+..++... +...-+|+.+--.|+++.+++.
T Consensus 119 ~~yDlvILDEi~~al~~g~l~~~ev~~~l~~R----p~~~~vIlTGr~ap~~l~e~AD 172 (196)
T 1g5t_A 119 PLLDMVVLDELTYMVAYDYLPLEEVISALNAR----PGHQTVIITGRGCHRDILDLAD 172 (196)
T ss_dssp TTCSEEEEETHHHHHHTTSSCHHHHHHHHHTS----CTTCEEEEECSSCCHHHHHHCS
T ss_pred CCCCEEEEeCCCccccCCCCCHHHHHHHHHhC----cCCCEEEEECCCCcHHHHHhCc
Confidence 6688999999977665553 24455555543 4555566666667777776654
No 168
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=90.21 E-value=0.62 Score=45.58 Aligned_cols=18 Identities=22% Similarity=0.344 Sum_probs=14.7
Q ss_pred CCCeeE--EccCCCCccchh
Q 013173 182 GRDLMA--CAQTGSGKTAAF 199 (448)
Q Consensus 182 g~d~lv--~a~TGsGKT~~~ 199 (448)
+..+++ .++.|+|||...
T Consensus 50 ~~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHH
Confidence 346888 999999999864
No 169
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=90.15 E-value=0.62 Score=43.77 Aligned_cols=41 Identities=20% Similarity=0.203 Sum_probs=25.4
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchh
Q 013173 146 TFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 146 ~f~~l~L~~~l~~~l~~~~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~ 199 (448)
+|+++--.+.+.+.+...-- . -...++++.+|+|+|||...
T Consensus 15 ~~~~~~g~~~~~~~l~~~l~-~------------~~~~~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 15 TLDEVVGQDEVIQRLKGYVE-R------------KNIPHLLFSGPPGTGKTATA 55 (319)
T ss_dssp SGGGSCSCHHHHHHHHTTTT-T------------TCCCCEEEESSSSSSHHHHH
T ss_pred CHHHHhCCHHHHHHHHHHHh-C------------CCCCeEEEECcCCcCHHHHH
Confidence 45665555666666554210 0 01235999999999999854
No 170
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.99 E-value=0.9 Score=43.40 Aligned_cols=17 Identities=24% Similarity=0.507 Sum_probs=14.8
Q ss_pred CCeeEEccCCCCccchh
Q 013173 183 RDLMACAQTGSGKTAAF 199 (448)
Q Consensus 183 ~d~lv~a~TGsGKT~~~ 199 (448)
.++++.+|+|+|||...
T Consensus 59 ~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45999999999999854
No 171
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=89.89 E-value=3 Score=40.01 Aligned_cols=16 Identities=25% Similarity=0.345 Sum_probs=13.9
Q ss_pred CeeEEccCCCCccchh
Q 013173 184 DLMACAQTGSGKTAAF 199 (448)
Q Consensus 184 d~lv~a~TGsGKT~~~ 199 (448)
-+++.++.|+|||...
T Consensus 40 ~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIA 55 (373)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3799999999999864
No 172
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=89.88 E-value=5.9 Score=38.41 Aligned_cols=71 Identities=15% Similarity=0.153 Sum_probs=54.3
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHH---hc-CccEEEeChHHHHHHHhcccccCCCe
Q 013173 223 YPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLREL---ER-GVDILVATPGRLVDLLERARVSLQMI 298 (448)
Q Consensus 223 ~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~~-~~~Ilv~Tp~~l~~~l~~~~~~l~~v 298 (448)
..++||.+++++.+..+++.+++. ++.+..++|+.+..+....+ .. ..+|||||. .+. ..+++..+
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~-~Gidip~v 345 (417)
T 2i4i_A 276 DSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAA-RGLDISNV 345 (417)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-----HHH-TTSCCCCE
T ss_pred CCeEEEEECCHHHHHHHHHHHHHC----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhh-cCCCcccC
Confidence 456999999999999999998874 67888899998866554333 22 478999994 333 35688999
Q ss_pred eEEEE
Q 013173 299 RYLAL 303 (448)
Q Consensus 299 ~~lVl 303 (448)
++||.
T Consensus 346 ~~Vi~ 350 (417)
T 2i4i_A 346 KHVIN 350 (417)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 98886
No 173
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=89.88 E-value=0.13 Score=46.71 Aligned_cols=47 Identities=11% Similarity=0.019 Sum_probs=28.0
Q ss_pred CCeeEEEEcCCccccc-----CCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHH
Q 013173 296 QMIRYLALDEADRMLD-----MGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEI 346 (448)
Q Consensus 296 ~~v~~lVlDEah~ll~-----~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v 346 (448)
.+.++||+||.-.+++ ......+..++..+.. ... +++++.-...++
T Consensus 134 ~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~---~g~-tii~vtH~~~~~ 185 (251)
T 2ehv_A 134 INAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLE---MGV-TTILTTEAPDPQ 185 (251)
T ss_dssp TTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHH---HCC-EEEEEECCC---
T ss_pred hCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHH---CCC-eEEEEECCCCCC
Confidence 4678899999998876 3444557777766621 123 555655544443
No 174
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=89.78 E-value=6.2 Score=41.61 Aligned_cols=76 Identities=22% Similarity=0.301 Sum_probs=58.8
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHH---Hhc-CccEEEeChHHHHHHHhcccccCCCee
Q 013173 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRE---LER-GVDILVATPGRLVDLLERARVSLQMIR 299 (448)
Q Consensus 224 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~~-~~~Ilv~Tp~~l~~~l~~~~~~l~~v~ 299 (448)
.++||.++|+..+..+.+.+... ++++..++++.+..+.... +.. ..+|||||- .+ ...+++..++
T Consensus 446 ~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~-----~l-~~GlDip~v~ 515 (661)
T 2d7d_A 446 ERVLVTTLTKKMSEDLTDYLKEI----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN-----LL-REGLDIPEVS 515 (661)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC-----CC-STTCCCTTEE
T ss_pred CeEEEEECCHHHHHHHHHHHHhc----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc-----hh-hCCcccCCCC
Confidence 47999999999999999988884 6778888888776555443 333 479999994 22 3456889999
Q ss_pred EEEEcCCccc
Q 013173 300 YLALDEADRM 309 (448)
Q Consensus 300 ~lVlDEah~l 309 (448)
+||+=++|..
T Consensus 516 lVi~~d~d~~ 525 (661)
T 2d7d_A 516 LVAILDADKE 525 (661)
T ss_dssp EEEETTTTCC
T ss_pred EEEEeCcccc
Confidence 9999999865
No 175
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=89.78 E-value=0.68 Score=41.18 Aligned_cols=20 Identities=25% Similarity=0.228 Sum_probs=16.7
Q ss_pred CCCCeeEEccCCCCccchhh
Q 013173 181 GGRDLMACAQTGSGKTAAFC 200 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~~ 200 (448)
.|.-+++.+++|+|||+...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~ 41 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSL 41 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHH
Confidence 56778999999999998543
No 176
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.73 E-value=0.19 Score=49.68 Aligned_cols=54 Identities=15% Similarity=0.155 Sum_probs=31.0
Q ss_pred cCCCcccCCCCHHHHHHHHHC---CCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchh
Q 013173 143 AVNTFAEIDLGEALNLNIRRC---KYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 143 ~~~~f~~l~L~~~l~~~l~~~---~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~ 199 (448)
|--+|++.+=-+..++.|++. -+..|--++..-++ .-+-+++.+|.|+|||+..
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~---~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIA---QPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCC---CCCCEEEESCSSSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCceEEeCCCCCCHHHHH
Confidence 345788886444455555432 11122222222221 2478999999999999853
No 177
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=89.67 E-value=1.1 Score=42.50 Aligned_cols=46 Identities=13% Similarity=0.346 Sum_probs=27.5
Q ss_pred CCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHH
Q 013173 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEI 346 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v 346 (448)
....+++||||||.|.. .....+++.+..++ ... +++|.++-+..+
T Consensus 80 ~~~~kvviIdead~lt~----~a~naLLk~LEep~-~~t-~fIl~t~~~~kl 125 (305)
T 2gno_A 80 LYTRKYVIVHDCERMTQ----QAANAFLKALEEPP-EYA-VIVLNTRRWHYL 125 (305)
T ss_dssp SSSSEEEEETTGGGBCH----HHHHHTHHHHHSCC-TTE-EEEEEESCGGGS
T ss_pred cCCceEEEeccHHHhCH----HHHHHHHHHHhCCC-CCe-EEEEEECChHhC
Confidence 35678999999999864 33445555555543 334 444444544433
No 178
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.65 E-value=1.2 Score=41.86 Aligned_cols=16 Identities=25% Similarity=0.490 Sum_probs=14.2
Q ss_pred CeeEEccCCCCccchh
Q 013173 184 DLMACAQTGSGKTAAF 199 (448)
Q Consensus 184 d~lv~a~TGsGKT~~~ 199 (448)
++++.++.|+|||...
T Consensus 44 ~~ll~G~~G~GKt~la 59 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSV 59 (323)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred eEEEECcCCCCHHHHH
Confidence 5999999999999854
No 179
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=89.47 E-value=1.4 Score=41.79 Aligned_cols=69 Identities=16% Similarity=0.244 Sum_probs=52.5
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHH---hc-CccEEEeChHHHHHHHhcccccCCCeeE
Q 013173 225 LALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLREL---ER-GVDILVATPGRLVDLLERARVSLQMIRY 300 (448)
Q Consensus 225 ~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~~-~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~ 300 (448)
++||.|+|++-+..+++.+.+. ++.+..++|+.+..++...+ .. ..+|||||- .+ ...+++..+.+
T Consensus 30 ~~LVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~-----va-~~Gidi~~v~~ 99 (300)
T 3i32_A 30 RAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATD-----VA-ARGLDIPQVDL 99 (300)
T ss_dssp SEEEECSSHHHHHHHHHHHHTT----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECS-----TT-TCSTTCCCCSE
T ss_pred CEEEEECCHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEec-----hh-hcCccccceeE
Confidence 4999999999999988888764 67888999998876654433 23 478999993 22 23567888998
Q ss_pred EEE
Q 013173 301 LAL 303 (448)
Q Consensus 301 lVl 303 (448)
||.
T Consensus 100 VI~ 102 (300)
T 3i32_A 100 VVH 102 (300)
T ss_dssp EEE
T ss_pred EEE
Confidence 875
No 180
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=89.19 E-value=2.3 Score=43.96 Aligned_cols=27 Identities=26% Similarity=0.352 Sum_probs=20.5
Q ss_pred CCCeeEEccCCCCccchhhhhHHHHHh
Q 013173 182 GRDLMACAQTGSGKTAAFCFPIISGIM 208 (448)
Q Consensus 182 g~d~lv~a~TGsGKT~~~~lpil~~l~ 208 (448)
.-+++|.+.||||||.+....+++.+.
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~ 240 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILF 240 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999986555554443
No 181
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=88.14 E-value=0.57 Score=43.94 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=17.8
Q ss_pred hCCCCeeEEccCCCCccchhhh
Q 013173 180 IGGRDLMACAQTGSGKTAAFCF 201 (448)
Q Consensus 180 ~~g~d~lv~a~TGsGKT~~~~l 201 (448)
..|.-+++.+++|+|||+....
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ 54 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQ 54 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHH
Confidence 3577799999999999986543
No 182
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=87.98 E-value=0.5 Score=41.78 Aligned_cols=21 Identities=24% Similarity=0.045 Sum_probs=17.0
Q ss_pred CCCCeeEEccCCCCccchhhh
Q 013173 181 GGRDLMACAQTGSGKTAAFCF 201 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~~l 201 (448)
.|.-+++.+++|+|||+....
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~ 39 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQ 39 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 456789999999999986543
No 183
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=87.87 E-value=1 Score=45.27 Aligned_cols=25 Identities=20% Similarity=0.076 Sum_probs=18.7
Q ss_pred CCCCeeEEccCCCCccchhhhhHHH
Q 013173 181 GGRDLMACAQTGSGKTAAFCFPIIS 205 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~~lpil~ 205 (448)
.|.-+++.|++|+|||+..+--+.+
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~ 226 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQN 226 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4566899999999999865444433
No 184
>2yka_B ORF57 protein, 52 kDa immediate-early phosphoprotein; RNA binding protein-transcription complex, RNA binding prote; NMR {Saimiriine herpesvirus 2}
Probab=87.44 E-value=0.11 Score=28.71 Aligned_cols=15 Identities=40% Similarity=0.647 Sum_probs=12.0
Q ss_pred CcccccchhcccccC
Q 013173 2 STSWADSVSASENAA 16 (448)
Q Consensus 2 ~~~~~~~~~~~~~~~ 16 (448)
+++|+|||.+++...
T Consensus 8 r~nWs~RV~E~~~~r 22 (26)
T 2yka_B 8 KTSWADRVREAAAQR 22 (26)
Confidence 589999999876543
No 185
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=87.44 E-value=0.48 Score=48.94 Aligned_cols=19 Identities=32% Similarity=0.337 Sum_probs=16.5
Q ss_pred CCCCeeEEccCCCCccchh
Q 013173 181 GGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~ 199 (448)
.+..+++.+|+|+|||+..
T Consensus 107 ~g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp CSCEEEEESSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4778999999999999854
No 186
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=87.41 E-value=0.86 Score=45.64 Aligned_cols=25 Identities=24% Similarity=0.070 Sum_probs=18.1
Q ss_pred CCCCeeEEccCCCCccchhhhhHHH
Q 013173 181 GGRDLMACAQTGSGKTAAFCFPIIS 205 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~~lpil~ 205 (448)
.|.-+++.|++|+|||...+-.+.+
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~ 223 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQN 223 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 3456899999999999865444433
No 187
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=87.31 E-value=6.7 Score=37.59 Aligned_cols=74 Identities=14% Similarity=0.113 Sum_probs=55.6
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHH---hc-CccEEEeChHHHHHHHhcccccCCCee
Q 013173 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLREL---ER-GVDILVATPGRLVDLLERARVSLQMIR 299 (448)
Q Consensus 224 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~~-~~~Ilv~Tp~~l~~~l~~~~~~l~~v~ 299 (448)
.++||.+++++.+..+++.+.+. ++.+..++|+.+..+....+ .. ..+|||+|. . -...+++..++
T Consensus 251 ~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~-~~~Gidi~~~~ 320 (391)
T 1xti_A 251 NQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-----L-FGRGMDIERVN 320 (391)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESC-----C-CSSCBCCTTEE
T ss_pred CcEEEEeCcHHHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECC-----h-hhcCCCcccCC
Confidence 46999999999999999998874 57788889998765554333 33 478999993 2 22456889999
Q ss_pred EEEEcCCc
Q 013173 300 YLALDEAD 307 (448)
Q Consensus 300 ~lVlDEah 307 (448)
+||.-+..
T Consensus 321 ~Vi~~~~p 328 (391)
T 1xti_A 321 IAFNYDMP 328 (391)
T ss_dssp EEEESSCC
T ss_pred EEEEeCCC
Confidence 99976543
No 188
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=87.08 E-value=7.6 Score=40.93 Aligned_cols=76 Identities=17% Similarity=0.180 Sum_probs=58.1
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHH---Hhc-CccEEEeChHHHHHHHhcccccCCCee
Q 013173 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRE---LER-GVDILVATPGRLVDLLERARVSLQMIR 299 (448)
Q Consensus 224 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~~-~~~Ilv~Tp~~l~~~l~~~~~~l~~v~ 299 (448)
.++||.++|+..+..+.+.+... ++++..++++.+..+.... +.. ..+|||||- .+ ...+++..++
T Consensus 440 ~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~-----~l-~~GlDip~v~ 509 (664)
T 1c4o_A 440 ERTLVTVLTVRMAEELTSFLVEH----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN-----LL-REGLDIPEVS 509 (664)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC-----CC-CTTCCCTTEE
T ss_pred CEEEEEECCHHHHHHHHHHHHhc----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccC-----hh-hcCccCCCCC
Confidence 46999999999999999988874 5778888888776555443 333 379999993 22 3456889999
Q ss_pred EEEEcCCccc
Q 013173 300 YLALDEADRM 309 (448)
Q Consensus 300 ~lVlDEah~l 309 (448)
+||+=++|..
T Consensus 510 lVI~~d~d~~ 519 (664)
T 1c4o_A 510 LVAILDADKE 519 (664)
T ss_dssp EEEETTTTSC
T ss_pred EEEEeCCccc
Confidence 9999888754
No 189
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=86.56 E-value=6.4 Score=37.20 Aligned_cols=73 Identities=14% Similarity=0.227 Sum_probs=53.8
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHH---hc-CccEEEeChHHHHHHHhcccccCCCee
Q 013173 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLREL---ER-GVDILVATPGRLVDLLERARVSLQMIR 299 (448)
Q Consensus 224 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~~-~~~Ilv~Tp~~l~~~l~~~~~~l~~v~ 299 (448)
.++||.+++++-+..+++.+++. ++.+..++|+.+..+....+ .. ..+|||+|. .+. ..+++..++
T Consensus 239 ~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~-~Gid~~~~~ 308 (367)
T 1hv8_A 239 FYGLVFCKTKRDTKELASMLRDI----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-----VMS-RGIDVNDLN 308 (367)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHT----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-----THH-HHCCCSCCS
T ss_pred CcEEEEECCHHHHHHHHHHHHhc----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhh-cCCCcccCC
Confidence 45899999999999999999875 57788889988866554333 22 478999994 222 245788888
Q ss_pred EEEEcCC
Q 013173 300 YLALDEA 306 (448)
Q Consensus 300 ~lVlDEa 306 (448)
+||.-+.
T Consensus 309 ~Vi~~~~ 315 (367)
T 1hv8_A 309 CVINYHL 315 (367)
T ss_dssp EEEESSC
T ss_pred EEEEecC
Confidence 8886543
No 190
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.42 E-value=0.28 Score=49.09 Aligned_cols=54 Identities=22% Similarity=0.196 Sum_probs=30.5
Q ss_pred cCCCcccCCCCHHHHHHHHHC---CCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchh
Q 013173 143 AVNTFAEIDLGEALNLNIRRC---KYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 143 ~~~~f~~l~L~~~l~~~l~~~---~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~ 199 (448)
|--+|++.+=-+..++.|.+. -+..|--++..-+ .--+-+++.+|.|||||+..
T Consensus 176 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~---~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 176 GEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGI---KPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp CSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCC---CCCCEEEEESCTTSSHHHHH
T ss_pred CCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeEEEECCCCCcHHHHH
Confidence 345788886445555555432 1112222222211 12367999999999999953
No 191
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=86.36 E-value=0.37 Score=48.84 Aligned_cols=17 Identities=24% Similarity=0.458 Sum_probs=14.9
Q ss_pred CCeeEEccCCCCccchh
Q 013173 183 RDLMACAQTGSGKTAAF 199 (448)
Q Consensus 183 ~d~lv~a~TGsGKT~~~ 199 (448)
+.+++.+|+|+|||+..
T Consensus 50 ~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLA 66 (476)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 56999999999999854
No 192
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=86.33 E-value=2.2 Score=44.40 Aligned_cols=72 Identities=13% Similarity=0.131 Sum_probs=54.8
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHH---h-cCccEEEeChHHHHHHHhcccccCCCe
Q 013173 223 YPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLREL---E-RGVDILVATPGRLVDLLERARVSLQMI 298 (448)
Q Consensus 223 ~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~-~~~~Ilv~Tp~~l~~~l~~~~~~l~~v 298 (448)
+..+||.|+|+.-+.++++.+.+. ++.+..++++.+..+....+ . ...+|||||. .-...+++.+|
T Consensus 267 ~~~~IVf~~sr~~~e~la~~L~~~----g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~------a~~~GID~p~V 336 (591)
T 2v1x_A 267 GQSGIIYCFSQKDSEQVTVSLQNL----GIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATV------AFGMGIDKPDV 336 (591)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECT------TSCTTCCCSCE
T ss_pred CCCeEEEeCcHHHHHHHHHHHHHC----CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec------hhhcCCCcccc
Confidence 346999999999999999999874 67888999998876554333 2 2479999993 22345688999
Q ss_pred eEEEEc
Q 013173 299 RYLALD 304 (448)
Q Consensus 299 ~~lVlD 304 (448)
++||.=
T Consensus 337 ~~VI~~ 342 (591)
T 2v1x_A 337 RFVIHH 342 (591)
T ss_dssp EEEEES
T ss_pred cEEEEe
Confidence 998853
No 193
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.02 E-value=1.2 Score=44.72 Aligned_cols=54 Identities=15% Similarity=0.202 Sum_probs=32.4
Q ss_pred cCCCcccCCCCHHHHHHHHHCC---CCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchh
Q 013173 143 AVNTFAEIDLGEALNLNIRRCK---YVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 143 ~~~~f~~l~L~~~l~~~l~~~~---~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~ 199 (448)
|--+|++.+=-+.+++.|++.- +..|--++..-+ .--+-+|+.+|.|+|||+..
T Consensus 204 P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi---~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 204 PDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGI---DPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp CSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTC---CCCSEEEECSCTTSSHHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCC---CCCCceEeeCCCCCcHHHHH
Confidence 4467899876666666665421 112222222111 13467999999999999853
No 194
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=85.60 E-value=2.7 Score=43.09 Aligned_cols=78 Identities=17% Similarity=0.115 Sum_probs=57.6
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHH---h-cCccEEEeChHHHHHHHhcccccCCCe
Q 013173 223 YPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLREL---E-RGVDILVATPGRLVDLLERARVSLQMI 298 (448)
Q Consensus 223 ~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~-~~~~Ilv~Tp~~l~~~l~~~~~~l~~v 298 (448)
..++||.|+|+.-|..+++.+++... .++.+..++|+.+..+....+ . ...+|||||. . -...+++..|
T Consensus 339 ~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~-----~-~~~GiDip~v 411 (563)
T 3i5x_A 339 NYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----V-GARGMDFPNV 411 (563)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----G-GTSSCCCTTC
T ss_pred CCcEEEEcCcHHHHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc-----h-hhcCCCcccC
Confidence 34799999999999999999987532 267788889998866554333 2 2489999994 2 2345788999
Q ss_pred eEEEEcCCc
Q 013173 299 RYLALDEAD 307 (448)
Q Consensus 299 ~~lVlDEah 307 (448)
++||.-..-
T Consensus 412 ~~VI~~~~p 420 (563)
T 3i5x_A 412 HEVLQIGVP 420 (563)
T ss_dssp CEEEEESCC
T ss_pred CEEEEECCC
Confidence 998865543
No 195
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=85.14 E-value=2.9 Score=41.43 Aligned_cols=68 Identities=12% Similarity=0.164 Sum_probs=52.8
Q ss_pred EEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHH---hc-CccEEEeChHHHHHHHhcccccCCCeeEE
Q 013173 226 ALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLREL---ER-GVDILVATPGRLVDLLERARVSLQMIRYL 301 (448)
Q Consensus 226 ~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~~-~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~l 301 (448)
+||.|+|+.-|..+++.+.+. ++.+..++|+.+..+....+ .. .++|||||. +-...+++.++++|
T Consensus 303 ~lVF~~t~~~a~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~------v~~rGlDi~~v~~V 372 (434)
T 2db3_A 303 TIVFVETKRGADFLASFLSEK----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS------VASRGLDIKNIKHV 372 (434)
T ss_dssp EEEECSSHHHHHHHHHHHHHT----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG------GGTSSCCCTTCCEE
T ss_pred EEEEEeCcHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch------hhhCCCCcccCCEE
Confidence 999999999999999988874 67788999998866554433 33 479999995 22345788999988
Q ss_pred EE
Q 013173 302 AL 303 (448)
Q Consensus 302 Vl 303 (448)
|.
T Consensus 373 I~ 374 (434)
T 2db3_A 373 IN 374 (434)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 196
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=85.06 E-value=3.2 Score=42.89 Aligned_cols=77 Identities=17% Similarity=0.120 Sum_probs=57.3
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHH---hc-CccEEEeChHHHHHHHhcccccCCCee
Q 013173 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLREL---ER-GVDILVATPGRLVDLLERARVSLQMIR 299 (448)
Q Consensus 224 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~~-~~~Ilv~Tp~~l~~~l~~~~~~l~~v~ 299 (448)
.++||.|+|+.-|..+++.+++... .++.+..++|+.+..+....+ .. ..+|||||. .+ ...+++..|+
T Consensus 289 ~~~iVF~~t~~~~~~l~~~L~~~~~-~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~-----~~-~~GiDip~v~ 361 (579)
T 3sqw_A 289 YKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VG-ARGMDFPNVH 361 (579)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GG-TSSCCCTTCC
T ss_pred CcEEEECCcHHHHHHHHHHHHHhhc-CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc-----hh-hcCCCcccCC
Confidence 4699999999999999999987532 267788889998866554333 22 479999994 22 3457889999
Q ss_pred EEEEcCCc
Q 013173 300 YLALDEAD 307 (448)
Q Consensus 300 ~lVlDEah 307 (448)
+||.-..-
T Consensus 362 ~VI~~~~p 369 (579)
T 3sqw_A 362 EVLQIGVP 369 (579)
T ss_dssp EEEEESCC
T ss_pred EEEEcCCC
Confidence 99876543
No 197
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=84.89 E-value=2.1 Score=43.53 Aligned_cols=18 Identities=28% Similarity=0.438 Sum_probs=15.7
Q ss_pred CCCeeEEccCCCCccchh
Q 013173 182 GRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 182 g~d~lv~a~TGsGKT~~~ 199 (448)
.+.+++.+++|+|||+..
T Consensus 238 ~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CCcEEEECcCCCCHHHHH
Confidence 467999999999999954
No 198
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=84.85 E-value=1.1 Score=43.39 Aligned_cols=22 Identities=27% Similarity=0.291 Sum_probs=17.6
Q ss_pred CCCCeeEEccCCCCccchhhhh
Q 013173 181 GGRDLMACAQTGSGKTAAFCFP 202 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~~lp 202 (448)
.|+-+++.++.|+|||...+..
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~l 81 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHA 81 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 4677999999999999865443
No 199
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=84.77 E-value=3.4 Score=40.19 Aligned_cols=71 Identities=11% Similarity=0.157 Sum_probs=53.7
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHH---hc-CccEEEeChHHHHHHHhcccccCCCee
Q 013173 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLREL---ER-GVDILVATPGRLVDLLERARVSLQMIR 299 (448)
Q Consensus 224 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~~-~~~Ilv~Tp~~l~~~l~~~~~~l~~v~ 299 (448)
.++||.|++++-+..+++.+... ++.+..++|+.+..+....+ .. ..+|||+|. . -...+++..++
T Consensus 277 ~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~-~~~Gidi~~v~ 346 (410)
T 2j0s_A 277 TQAVIFCNTKRKVDWLTEKMREA----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD-----V-WARGLDVPQVS 346 (410)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG-----G-GSSSCCCTTEE
T ss_pred CcEEEEEcCHHHHHHHHHHHHhC----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC-----h-hhCcCCcccCC
Confidence 36999999999999999988874 56788889998865544333 22 478999994 2 23457899999
Q ss_pred EEEEc
Q 013173 300 YLALD 304 (448)
Q Consensus 300 ~lVlD 304 (448)
+||.-
T Consensus 347 ~Vi~~ 351 (410)
T 2j0s_A 347 LIINY 351 (410)
T ss_dssp EEEES
T ss_pred EEEEE
Confidence 98863
No 200
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=84.11 E-value=0.69 Score=44.65 Aligned_cols=25 Identities=24% Similarity=0.286 Sum_probs=18.6
Q ss_pred CCCCeeEEccCCCCccchhhhhHHH
Q 013173 181 GGRDLMACAQTGSGKTAAFCFPIIS 205 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~~lpil~ 205 (448)
.|.=+++.|++|+|||...+-.+.+
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~ 69 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLS 69 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 4556899999999999865544443
No 201
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=83.69 E-value=3.3 Score=42.35 Aligned_cols=71 Identities=14% Similarity=0.167 Sum_probs=53.7
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHH---Hh-cCccEEEeChHHHHHHHhcccccCCCeeE
Q 013173 225 LALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRE---LE-RGVDILVATPGRLVDLLERARVSLQMIRY 300 (448)
Q Consensus 225 ~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~-~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~ 300 (448)
.+||.++|+.-+..+++.+++. ++.+..++++.+..+.... +. ...+|||||. .-...+++.++++
T Consensus 238 ~~IVf~~sr~~~e~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~------a~~~GiD~p~v~~ 307 (523)
T 1oyw_A 238 SGIIYCNSRAKVEDTAARLQSK----GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATV------AFGMGINKPNVRF 307 (523)
T ss_dssp CEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECT------TSCTTTCCTTCCE
T ss_pred cEEEEeCCHHHHHHHHHHHHHC----CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec------hhhCCCCccCccE
Confidence 4999999999999999999874 6788889999886554332 22 2479999995 2233568889999
Q ss_pred EEEcC
Q 013173 301 LALDE 305 (448)
Q Consensus 301 lVlDE 305 (448)
||.-.
T Consensus 308 VI~~~ 312 (523)
T 1oyw_A 308 VVHFD 312 (523)
T ss_dssp EEESS
T ss_pred EEEEC
Confidence 88633
No 202
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=83.64 E-value=3 Score=40.54 Aligned_cols=21 Identities=24% Similarity=0.137 Sum_probs=16.7
Q ss_pred CCCCeeEEccCCCCccchhhh
Q 013173 181 GGRDLMACAQTGSGKTAAFCF 201 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~~l 201 (448)
.|+-+++.+++|+|||...+-
T Consensus 73 ~G~li~I~G~pGsGKTtlal~ 93 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALA 93 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHH
Confidence 456789999999999985433
No 203
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=83.46 E-value=2.2 Score=48.17 Aligned_cols=78 Identities=12% Similarity=0.156 Sum_probs=59.9
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHH---h-cCccEEEeChHHHHHHHhcccccCCCe
Q 013173 223 YPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLREL---E-RGVDILVATPGRLVDLLERARVSLQMI 298 (448)
Q Consensus 223 ~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~-~~~~Ilv~Tp~~l~~~l~~~~~~l~~v 298 (448)
+.+++|+|++++-+..+++.+++.. .+.++..++|+.+..+....+ . ..++|||||. . -...+++.++
T Consensus 812 g~qvlvf~~~v~~~~~l~~~L~~~~--p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~-----v-~e~GiDip~v 883 (1151)
T 2eyq_A 812 GGQVYYLYNDVENIQKAAERLAELV--PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT-----I-IETGIDIPTA 883 (1151)
T ss_dssp TCEEEEECCCSSCHHHHHHHHHHHC--TTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESS-----T-TGGGSCCTTE
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhC--CCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECC-----c-ceeeecccCC
Confidence 4679999999999999999998863 357788889998866554333 2 2489999995 2 2345789999
Q ss_pred eEEEEcCCcc
Q 013173 299 RYLALDEADR 308 (448)
Q Consensus 299 ~~lVlDEah~ 308 (448)
.+||+..++.
T Consensus 884 ~~VIi~~~~~ 893 (1151)
T 2eyq_A 884 NTIIIERADH 893 (1151)
T ss_dssp EEEEETTTTS
T ss_pred cEEEEeCCCC
Confidence 9999988874
No 204
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=83.27 E-value=24 Score=32.88 Aligned_cols=42 Identities=19% Similarity=0.301 Sum_probs=25.6
Q ss_pred hHHHHHHHhcccccCCCeeEEEEcCCccccc---CCCHHHHHHHHHHc
Q 013173 281 PGRLVDLLERARVSLQMIRYLALDEADRMLD---MGFEPQIRKIVQQM 325 (448)
Q Consensus 281 p~~l~~~l~~~~~~l~~v~~lVlDEah~ll~---~gf~~~i~~i~~~l 325 (448)
...+++.+....- .--+|||||+|.+.+ ..+...+..+....
T Consensus 124 ~~~l~~~l~~~~~---~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~ 168 (357)
T 2fna_A 124 FANLLESFEQASK---DNVIIVLDEAQELVKLRGVNLLPALAYAYDNL 168 (357)
T ss_dssp HHHHHHHHHHTCS---SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCC---CCeEEEEECHHHhhccCchhHHHHHHHHHHcC
Confidence 3445555543211 234799999999864 35666777666653
No 205
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=83.10 E-value=4.3 Score=39.21 Aligned_cols=72 Identities=11% Similarity=0.140 Sum_probs=53.9
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHH---Hhc-CccEEEeChHHHHHHHhcccccCCCee
Q 013173 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRE---LER-GVDILVATPGRLVDLLERARVSLQMIR 299 (448)
Q Consensus 224 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~~-~~~Ilv~Tp~~l~~~l~~~~~~l~~v~ 299 (448)
.++||.+++++-+..+++.++.. ++.+..++|+.+..+.... +.. ..+|||+|. . -...+++..++
T Consensus 259 ~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~-~~~Gidip~~~ 328 (400)
T 1s2m_A 259 NQAIIFCNSTNRVELLAKKITDL----GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD-----L-LTRGIDIQAVN 328 (400)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS-----C-SSSSCCCTTEE
T ss_pred CcEEEEEecHHHHHHHHHHHHhc----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-----c-cccCCCccCCC
Confidence 46999999999999999999875 5678888999886655433 333 478999993 2 23456888999
Q ss_pred EEEEcC
Q 013173 300 YLALDE 305 (448)
Q Consensus 300 ~lVlDE 305 (448)
+||.-+
T Consensus 329 ~Vi~~~ 334 (400)
T 1s2m_A 329 VVINFD 334 (400)
T ss_dssp EEEESS
T ss_pred EEEEeC
Confidence 888643
No 206
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=83.08 E-value=5.6 Score=38.00 Aligned_cols=53 Identities=19% Similarity=0.152 Sum_probs=35.6
Q ss_pred eeEEEEcCCcccc-cCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhhh
Q 013173 298 IRYLALDEADRML-DMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFL 354 (448)
Q Consensus 298 v~~lVlDEah~ll-~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~l 354 (448)
.+++++|.+.++- +.....++..+...+ ..+..++++.++...++...++.|.
T Consensus 212 ~d~vliDtaG~~~~~~~l~~eL~~i~ral----~~de~llvLDa~t~~~~~~~~~~~~ 265 (328)
T 3e70_C 212 IDVVLIDTAGRSETNRNLMDEMKKIARVT----KPNLVIFVGDALAGNAIVEQARQFN 265 (328)
T ss_dssp CSEEEEEECCSCCTTTCHHHHHHHHHHHH----CCSEEEEEEEGGGTTHHHHHHHHHH
T ss_pred chhhHHhhccchhHHHHHHHHHHHHHHHh----cCCCCEEEEecHHHHHHHHHHHHHH
Confidence 4567888887653 233556666666666 3455688889988888877777664
No 207
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=82.99 E-value=3.2 Score=42.01 Aligned_cols=52 Identities=17% Similarity=0.272 Sum_probs=38.6
Q ss_pred CCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcc
Q 013173 181 GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSY 248 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~ 248 (448)
.+..+.+.+-||||||++.. .+.... ...+|||+|+..+|.|+++.++.|..
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a-----~l~~~~-----------~~p~lvv~~~~~~A~~l~~~l~~~~~ 64 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVA-----EIAERH-----------AGPVVLIAPDMQNALRLHDEISQFTD 64 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHH-----HHHHHS-----------SSCEEEEESSHHHHHHHHHHHHHTCS
T ss_pred CCCeEEEeCCCchHHHHHHH-----HHHHHh-----------CCCEEEEeCCHHHHHHHHHHHHhhCC
Confidence 45668899999999998532 222211 01289999999999999999999853
No 208
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=82.71 E-value=2.2 Score=40.62 Aligned_cols=24 Identities=21% Similarity=0.034 Sum_probs=18.2
Q ss_pred CCCCeeEEccCCCCccchhhhhHH
Q 013173 181 GGRDLMACAQTGSGKTAAFCFPII 204 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~~lpil 204 (448)
.|.-+++.+++|+|||...+..+.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~ 129 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSV 129 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHH
Confidence 356789999999999986544333
No 209
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=82.59 E-value=0.64 Score=44.28 Aligned_cols=25 Identities=20% Similarity=0.058 Sum_probs=18.7
Q ss_pred CCCCeeEEccCCCCccchhhhhHHH
Q 013173 181 GGRDLMACAQTGSGKTAAFCFPIIS 205 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~~lpil~ 205 (448)
.|.-+++.|++|+|||...+-.+.+
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 4566999999999999765444443
No 210
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=82.35 E-value=1.6 Score=43.56 Aligned_cols=67 Identities=16% Similarity=0.210 Sum_probs=45.5
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHHhc-CccEEEeChHHHHHHHhcccccCCCeeEEE
Q 013173 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELER-GVDILVATPGRLVDLLERARVSLQMIRYLA 302 (448)
Q Consensus 224 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~-~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lV 302 (448)
.++||+||+++-|..+++.+++. ++++..++|... ......+.. ..+|||||. .+. ..+++. +++||
T Consensus 178 ~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~~R-~~~~~~F~~g~~~vLVaT~-----v~e-~GiDip-v~~VI 245 (440)
T 1yks_A 178 RPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRKTF-EREYPTIKQKKPDFILATD-----IAE-MGANLC-VERVL 245 (440)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSSSC-C--------CCCSEEEESS-----STT-CCTTCC-CSEEE
T ss_pred CCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecchhH-HHHHhhhcCCCceEEEECC-----hhh-eeeccC-ceEEE
Confidence 46999999999999999999885 577888888433 333344444 479999994 233 346777 88876
No 211
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=82.20 E-value=1.1 Score=35.12 Aligned_cols=37 Identities=14% Similarity=0.139 Sum_probs=33.6
Q ss_pred CCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCCH
Q 013173 404 QALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQ 440 (448)
Q Consensus 404 ~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q 440 (448)
..+++|||.+-..+...+..|...|+++..+.|++..
T Consensus 55 ~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~~ 91 (108)
T 3gk5_A 55 DKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQS 91 (108)
T ss_dssp TSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHHH
T ss_pred CCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHHH
Confidence 6789999999999999999999999999999998754
No 212
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=81.95 E-value=0.74 Score=38.12 Aligned_cols=21 Identities=10% Similarity=0.045 Sum_probs=17.6
Q ss_pred HhCCCCeeEEccCCCCccchh
Q 013173 179 SIGGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 179 i~~g~d~lv~a~TGsGKT~~~ 199 (448)
.....++++.+++|+|||...
T Consensus 24 ~~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHHH
T ss_pred hCCCCcEEEECCCCccHHHHH
Confidence 346788999999999999854
No 213
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=81.74 E-value=0.82 Score=39.87 Aligned_cols=61 Identities=11% Similarity=0.029 Sum_probs=42.4
Q ss_pred CHHHHhHHhhHhCC--CCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHH
Q 013173 169 TPVQRHAIPISIGG--RDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHV 241 (448)
Q Consensus 169 t~~Q~~~i~~i~~g--~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~ 241 (448)
.+-|..++..++.. +-.++.+.-|++||...+--++..... .+-++.||+|+..-.....+
T Consensus 36 ~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~------------~Gr~V~vLAp~~~s~~~l~~ 98 (189)
T 2l8b_A 36 TAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMARE------------QGREVQIIAADRRSQMNMKQ 98 (189)
T ss_dssp HHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHH------------TTCCEEEECSTTHHHHHHSC
T ss_pred CccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHh------------cCeEEEEEcCchHHHHHHHh
Confidence 35689999888754 447889999999999865444432222 23359999999987665433
No 214
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=80.35 E-value=3 Score=33.56 Aligned_cols=37 Identities=8% Similarity=0.125 Sum_probs=32.5
Q ss_pred CcEEEEe-CchhhHHHHHHHHHHCCCCeEEecCCCCHH
Q 013173 405 ALTLVFV-ETKKGADALEHWLYMNGFPATTIHGDRTQQ 441 (448)
Q Consensus 405 ~~tlVF~-~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~ 441 (448)
.++|||| .+-..+..++..|...|+++..|.|++..=
T Consensus 90 ~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~W 127 (134)
T 3g5j_A 90 DNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKAY 127 (134)
T ss_dssp SEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHHH
T ss_pred CeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHHH
Confidence 7899999 587888999999999999999999987653
No 215
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=80.28 E-value=1.9 Score=39.94 Aligned_cols=25 Identities=16% Similarity=0.093 Sum_probs=19.6
Q ss_pred HhCCCCeeEEccCCCCccchhhhhH
Q 013173 179 SIGGRDLMACAQTGSGKTAAFCFPI 203 (448)
Q Consensus 179 i~~g~d~lv~a~TGsGKT~~~~lpi 203 (448)
+..|.-+++.+++|+|||+.....+
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~ 51 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLA 51 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHH
Confidence 4467889999999999998654433
No 216
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=80.24 E-value=1.2 Score=34.24 Aligned_cols=36 Identities=14% Similarity=0.254 Sum_probs=32.7
Q ss_pred CCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCC
Q 013173 404 QALTLVFVETKKGADALEHWLYMNGFPATTIHGDRT 439 (448)
Q Consensus 404 ~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~ 439 (448)
..+++|||.+-..+...+..|...|+++..+.|++.
T Consensus 56 ~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 56 NETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp TSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 678999999999999999999999999999988764
No 217
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=80.23 E-value=4.4 Score=35.71 Aligned_cols=20 Identities=25% Similarity=0.096 Sum_probs=16.5
Q ss_pred CCCCeeEEccCCCCccchhh
Q 013173 181 GGRDLMACAQTGSGKTAAFC 200 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~~ 200 (448)
.|.-+.+.+|+|||||+...
T Consensus 24 ~G~~~~l~G~nGsGKSTll~ 43 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAH 43 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 56678999999999998543
No 218
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=80.19 E-value=0.87 Score=37.75 Aligned_cols=21 Identities=10% Similarity=0.105 Sum_probs=17.7
Q ss_pred hCCCCeeEEccCCCCccchhh
Q 013173 180 IGGRDLMACAQTGSGKTAAFC 200 (448)
Q Consensus 180 ~~g~d~lv~a~TGsGKT~~~~ 200 (448)
..+.++++.+++|+|||....
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~ 42 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGAR 42 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHH
Confidence 466789999999999998643
No 219
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=80.10 E-value=3 Score=44.72 Aligned_cols=19 Identities=26% Similarity=0.363 Sum_probs=16.2
Q ss_pred CCCCeeEEccCCCCccchh
Q 013173 181 GGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~ 199 (448)
...++++++++|+|||...
T Consensus 206 ~~~~vlL~G~~GtGKT~la 224 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIA 224 (758)
T ss_dssp SSCEEEEECCTTSSHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHH
Confidence 3567999999999999864
No 220
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=80.04 E-value=1.5 Score=33.27 Aligned_cols=35 Identities=17% Similarity=0.236 Sum_probs=31.8
Q ss_pred CcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCC
Q 013173 405 ALTLVFVETKKGADALEHWLYMNGFPATTIHGDRT 439 (448)
Q Consensus 405 ~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~ 439 (448)
.+++|||.+-..+...+..|...|+++..+.|++.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 67999999999999999999999999888888875
No 221
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=80.01 E-value=1.2 Score=43.17 Aligned_cols=18 Identities=28% Similarity=0.385 Sum_probs=15.4
Q ss_pred CCCCeeEEccCCCCccch
Q 013173 181 GGRDLMACAQTGSGKTAA 198 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~ 198 (448)
.+.-+++++|||||||+.
T Consensus 122 ~~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp SSEEEEEECSTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 455789999999999984
No 222
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=79.97 E-value=1.1 Score=34.97 Aligned_cols=36 Identities=14% Similarity=0.253 Sum_probs=32.1
Q ss_pred CCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCC
Q 013173 404 QALTLVFVETKKGADALEHWLYMNGFPATTIHGDRT 439 (448)
Q Consensus 404 ~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~ 439 (448)
..+++|||.+-..+...+..|...|+++..+.|++.
T Consensus 56 ~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~~ 91 (103)
T 3iwh_A 56 NEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp TSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChHH
Confidence 677999999999999999999999999988888763
No 223
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=79.94 E-value=1 Score=44.86 Aligned_cols=43 Identities=19% Similarity=0.280 Sum_probs=29.1
Q ss_pred CCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHH
Q 013173 181 GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELS 236 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~ 236 (448)
...++++.++||||||... -+++..++..+ ..++|+=|..++.
T Consensus 52 ~~~h~~i~G~tGsGKs~~~-~~li~~~~~~g------------~~viv~Dpkge~~ 94 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL-RELAYTGLLRG------------DRMVIVDPNGDML 94 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH-HHHHHHHHHTT------------CEEEEEEETTHHH
T ss_pred CcceEEEECCCCCCHHHHH-HHHHHHHHHCC------------CcEEEEeCCCchh
Confidence 4679999999999999974 34444444322 2366666766664
No 224
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=79.64 E-value=2.1 Score=46.00 Aligned_cols=95 Identities=15% Similarity=0.137 Sum_probs=0.0
Q ss_pred CeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCh
Q 013173 184 DLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPI 263 (448)
Q Consensus 184 d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~ 263 (448)
.+++.+|||+|||. ||..++..+.. .+..++.+..+..
T Consensus 523 ~~Ll~Gp~GtGKT~-------------------------------------lA~ala~~l~~----~~~~~i~i~~s~~- 560 (758)
T 3pxi_A 523 SFIFLGPTGVGKTE-------------------------------------LARALAESIFG----DEESMIRIDMSEY- 560 (758)
T ss_dssp EEEEESCTTSSHHH-------------------------------------HHHHHHHHHHS----CTTCEEEEEGGGG-
T ss_pred EEEEECCCCCCHHH-------------------------------------HHHHHHHHhcC----CCcceEEEechhc-
Q ss_pred HHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcccccCCCHHHHHHHHHHcCC----------CCCCCc
Q 013173 264 NQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDM----------PPPGMR 333 (448)
Q Consensus 264 ~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~----------~~~~~~ 333 (448)
.+-...+.+.+...+...... +|+|||+|.+.. .....++..++. ....+.
T Consensus 561 ----------~~~~~~~~~~l~~~~~~~~~~-----vl~lDEi~~~~~----~~~~~Ll~~le~g~~~~~~g~~~~~~~~ 621 (758)
T 3pxi_A 561 ----------MEKHSTSGGQLTEKVRRKPYS-----VVLLDAIEKAHP----DVFNILLQVLEDGRLTDSKGRTVDFRNT 621 (758)
T ss_dssp ----------CSSCCCC---CHHHHHHCSSS-----EEEEECGGGSCH----HHHHHHHHHHHHSBCC-----CCBCTTC
T ss_pred ----------ccccccccchhhHHHHhCCCe-----EEEEeCccccCH----HHHHHHHHHhccCeEEcCCCCEeccCCe
Q ss_pred EEEEEe
Q 013173 334 QTMLFS 339 (448)
Q Consensus 334 q~i~~S 339 (448)
.+|+.|
T Consensus 622 ~iI~tt 627 (758)
T 3pxi_A 622 ILIMTS 627 (758)
T ss_dssp EEEEEE
T ss_pred EEEEeC
No 225
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=79.43 E-value=4 Score=42.72 Aligned_cols=41 Identities=12% Similarity=-0.027 Sum_probs=29.1
Q ss_pred CCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCCHHHHHHhh
Q 013173 404 QALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 404 ~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
.+.+|||++|....+.+++.|. .+... ...+++..+|.++|
T Consensus 448 ~g~~lvlF~Sy~~l~~v~~~l~--~~~~~-~~q~~~~~~~~~ll 488 (620)
T 4a15_A 448 KKNTIVYFPSYSLMDRVENRVS--FEHMK-EYRGIDQKELYSML 488 (620)
T ss_dssp CSCEEEEESCHHHHHHHTSSCC--SCCEE-CCTTCCSHHHHHHH
T ss_pred CCCEEEEeCCHHHHHHHHHHHH--hcchh-ccCCCChhHHHHHH
Confidence 5679999999999999999886 23322 44555555666654
No 226
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=79.40 E-value=1.3 Score=40.99 Aligned_cols=28 Identities=18% Similarity=0.230 Sum_probs=20.3
Q ss_pred HhCCCCeeEEccCCCCccchhhhhHHHHHh
Q 013173 179 SIGGRDLMACAQTGSGKTAAFCFPIISGIM 208 (448)
Q Consensus 179 i~~g~d~lv~a~TGsGKT~~~~lpil~~l~ 208 (448)
+..|.-+.+++|||||||+.. -++..++
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll--~~l~g~~ 49 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTI--ASMIDYI 49 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHH--HHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHH--HHHHHhC
Confidence 446778999999999999953 3444443
No 227
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=79.34 E-value=1.2 Score=34.47 Aligned_cols=36 Identities=14% Similarity=0.253 Sum_probs=32.5
Q ss_pred CCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCC
Q 013173 404 QALTLVFVETKKGADALEHWLYMNGFPATTIHGDRT 439 (448)
Q Consensus 404 ~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~ 439 (448)
..++||||.+-..+...+..|...|+++..+.|++.
T Consensus 56 ~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (103)
T 3eme_A 56 NEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp TSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHH
Confidence 677999999999999999999999999999988764
No 228
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=79.28 E-value=8.8 Score=35.96 Aligned_cols=55 Identities=15% Similarity=0.258 Sum_probs=29.0
Q ss_pred CCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCc-hHHHHHHHhh
Q 013173 296 QMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFP-KEIQRLASDF 353 (448)
Q Consensus 296 ~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~-~~v~~l~~~~ 353 (448)
.+.++||+|.+-+.. .-...+..+...+... ....-++++.||.. .++..++..+
T Consensus 181 ~~~dlvIiDT~G~~~--~~~~~~~el~~~l~~~-~~~~~~lVl~at~~~~~~~~~~~~~ 236 (296)
T 2px0_A 181 SEYDHVFVDTAGRNF--KDPQYIDELKETIPFE-SSIQSFLVLSATAKYEDMKHIVKRF 236 (296)
T ss_dssp GGSSEEEEECCCCCT--TSHHHHHHHHHHSCCC-TTEEEEEEEETTBCHHHHHHHTTTT
T ss_pred cCCCEEEEeCCCCCh--hhHHHHHHHHHHHhhc-CCCeEEEEEECCCCHHHHHHHHHHH
Confidence 567899999665432 2234455555544211 12223677767654 4555554433
No 229
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=78.77 E-value=0.97 Score=51.82 Aligned_cols=31 Identities=26% Similarity=0.341 Sum_probs=21.7
Q ss_pred CCCeeEEEEcCCcccccCCCHHHHHHHHHHc
Q 013173 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQM 325 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l 325 (448)
+++-++||||||=--+|..-+..|.+.+..+
T Consensus 1233 lr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~ 1263 (1321)
T 4f4c_A 1233 VRNPKILLLDEATSALDTESEKVVQEALDRA 1263 (1321)
T ss_dssp HSCCSEEEEESCCCSTTSHHHHHHHHHHTTT
T ss_pred HhCCCEEEEeCccccCCHHHHHHHHHHHHHH
Confidence 4556789999998878865555666655554
No 230
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=79.87 E-value=0.42 Score=40.90 Aligned_cols=72 Identities=13% Similarity=0.160 Sum_probs=49.5
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHH---hc-CccEEEeChHHHHHHHhcccccCCCee
Q 013173 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLREL---ER-GVDILVATPGRLVDLLERARVSLQMIR 299 (448)
Q Consensus 224 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~~-~~~Ilv~Tp~~l~~~l~~~~~~l~~v~ 299 (448)
.++||.++++..+..+.+.++.. ++.+..++|+.+..+....+ .. ..+|||+|. .+. ..+++..+.
T Consensus 31 ~~~iVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~-~Gid~~~~~ 100 (170)
T 2yjt_D 31 TRSIVFVRKRERVHELANWLREA----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD-----VAA-RGIDIPDVS 100 (170)
Confidence 35999999999999988888774 56788888887654443322 22 368999992 222 235677777
Q ss_pred EEEEcC
Q 013173 300 YLALDE 305 (448)
Q Consensus 300 ~lVlDE 305 (448)
+||.-+
T Consensus 101 ~Vi~~~ 106 (170)
T 2yjt_D 101 HVFNFD 106 (170)
Confidence 777533
No 231
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=78.43 E-value=4.7 Score=39.62 Aligned_cols=74 Identities=23% Similarity=0.272 Sum_probs=51.4
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEEC--------CCChHHHHH---HHhc-CccEEEeChHHHHHHHhcc
Q 013173 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYG--------GAPINQQLR---ELER-GVDILVATPGRLVDLLERA 291 (448)
Q Consensus 224 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~g--------g~~~~~~~~---~l~~-~~~Ilv~Tp~~l~~~l~~~ 291 (448)
.++||.+++++-+..+.+.++.. ++++..++| +.+..+... .+.. .++|||+|. .+ ..
T Consensus 362 ~k~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~-----~~-~~ 431 (494)
T 1wp9_A 362 SKIIVFTNYRETAKKIVNELVKD----GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATS-----VG-EE 431 (494)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHT----TCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECG-----GG-GG
T ss_pred CeEEEEEccHHHHHHHHHHHHHc----CCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECC-----cc-cc
Confidence 45999999999999999998885 677888888 555444332 3333 478999993 22 23
Q ss_pred cccCCCeeEEEEcCCc
Q 013173 292 RVSLQMIRYLALDEAD 307 (448)
Q Consensus 292 ~~~l~~v~~lVlDEah 307 (448)
.+++..+++||+-+..
T Consensus 432 Gldl~~~~~Vi~~d~~ 447 (494)
T 1wp9_A 432 GLDVPEVDLVVFYEPV 447 (494)
T ss_dssp GGGSTTCCEEEESSCC
T ss_pred CCCchhCCEEEEeCCC
Confidence 5688889998865544
No 232
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=78.03 E-value=6.8 Score=39.68 Aligned_cols=58 Identities=21% Similarity=0.197 Sum_probs=30.9
Q ss_pred CeeEEEEcCCccccc-CCCHHHHHHHHHHcCC--CCCCCcEEEEEeccCchHHHHHHHhhh
Q 013173 297 MIRYLALDEADRMLD-MGFEPQIRKIVQQMDM--PPPGMRQTMLFSATFPKEIQRLASDFL 354 (448)
Q Consensus 297 ~v~~lVlDEah~ll~-~gf~~~i~~i~~~l~~--~~~~~~q~i~~SAT~~~~v~~l~~~~l 354 (448)
.+++++||=+-++-. ......+.+++..... +..+..-++.+.||...+....++.|.
T Consensus 375 ~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~~ak~f~ 435 (503)
T 2yhs_A 375 NIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFH 435 (503)
T ss_dssp TCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHHHHHHH
T ss_pred CCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHHHHHHHH
Confidence 346778887765421 1223344444433221 111233467889998767666676664
No 233
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=77.99 E-value=1.5 Score=47.41 Aligned_cols=17 Identities=29% Similarity=0.495 Sum_probs=15.1
Q ss_pred CCeeEEccCCCCccchh
Q 013173 183 RDLMACAQTGSGKTAAF 199 (448)
Q Consensus 183 ~d~lv~a~TGsGKT~~~ 199 (448)
+.+++.+|.|+|||+..
T Consensus 239 ~GILL~GPPGTGKT~LA 255 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 67999999999999854
No 234
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=77.93 E-value=1.2 Score=52.59 Aligned_cols=23 Identities=30% Similarity=0.228 Sum_probs=18.7
Q ss_pred CCCeeEEccCCCCccchhhhhHH
Q 013173 182 GRDLMACAQTGSGKTAAFCFPII 204 (448)
Q Consensus 182 g~d~lv~a~TGsGKT~~~~lpil 204 (448)
++.+++++|+|+|||....-.+.
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ 1449 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIA 1449 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 78999999999999987544333
No 235
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=76.87 E-value=5.4 Score=42.87 Aligned_cols=74 Identities=19% Similarity=0.204 Sum_probs=55.2
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhc-------ccCCcEEEEEECCCChHHHHHHHhc---------CccEEEeChHHHHHH
Q 013173 224 PLALILAPTRELSSQIHVEAKKFS-------YQTGVKVVVAYGGAPINQQLRELER---------GVDILVATPGRLVDL 287 (448)
Q Consensus 224 ~~~lil~PtreL~~qi~~~~~~~~-------~~~~~~~~~~~gg~~~~~~~~~l~~---------~~~Ilv~Tp~~l~~~ 287 (448)
..+||.+|++.-+..+++.+.+.. ...++.+..++|+.+..++...+.. ...|||||. .
T Consensus 304 g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~-----i 378 (773)
T 2xau_A 304 GDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTN-----I 378 (773)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECT-----H
T ss_pred CCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCc-----H
Confidence 469999999999999999887532 2357889999999988777654432 358999994 2
Q ss_pred HhcccccCCCeeEEEE
Q 013173 288 LERARVSLQMIRYLAL 303 (448)
Q Consensus 288 l~~~~~~l~~v~~lVl 303 (448)
++ ..+++..|.+||-
T Consensus 379 ae-~GidIp~v~~VId 393 (773)
T 2xau_A 379 AE-TSLTIDGIVYVVD 393 (773)
T ss_dssp HH-HTCCCTTEEEEEE
T ss_pred HH-hCcCcCCeEEEEe
Confidence 33 3467888987774
No 236
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=76.66 E-value=1.7 Score=44.42 Aligned_cols=31 Identities=16% Similarity=0.023 Sum_probs=22.3
Q ss_pred CCHHHHhHHhh-HhCCCCeeEEccCCCCccch
Q 013173 168 PTPVQRHAIPI-SIGGRDLMACAQTGSGKTAA 198 (448)
Q Consensus 168 pt~~Q~~~i~~-i~~g~d~lv~a~TGsGKT~~ 198 (448)
+++.+..-+.. +..|..++++++||||||+.
T Consensus 245 ~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 245 VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 34444444443 44788999999999999984
No 237
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=76.54 E-value=2.2 Score=33.22 Aligned_cols=37 Identities=14% Similarity=0.196 Sum_probs=32.5
Q ss_pred CCcEEEEeCchhhHHHHHHHHHHCCCC-eEEecCCCCH
Q 013173 404 QALTLVFVETKKGADALEHWLYMNGFP-ATTIHGDRTQ 440 (448)
Q Consensus 404 ~~~tlVF~~t~~~a~~l~~~L~~~g~~-~~~iHg~~~q 440 (448)
..++||||.+-..+...+..|...|+. +..+.|++..
T Consensus 52 ~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~ 89 (106)
T 3hix_A 52 SRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAA 89 (106)
T ss_dssp TSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHHH
T ss_pred CCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHHH
Confidence 567999999999999999999999995 8888888654
No 238
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=76.54 E-value=3.2 Score=41.22 Aligned_cols=66 Identities=12% Similarity=0.141 Sum_probs=46.4
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHHhc-CccEEEeChHHHHHHHhcccccCCCeeEE
Q 013173 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELER-GVDILVATPGRLVDLLERARVSLQMIRYL 301 (448)
Q Consensus 224 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~-~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~l 301 (448)
.++||++|+++-+..+++.+++. ++++..++|.. .......+.. ..+|||||. .+. ..+++. +.+|
T Consensus 172 ~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~-r~~~~~~f~~g~~~vLVaT~-----v~e-~GiDip-~~~V 238 (431)
T 2v6i_A 172 GRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRKT-FESEYPKCKSEKWDFVITTD-----ISE-MGANFK-ADRV 238 (431)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTT-HHHHTTHHHHSCCSEEEECG-----GGG-TSCCCC-CSEE
T ss_pred CCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCcc-HHHHHHhhcCCCCeEEEECc-----hHH-cCcccC-CcEE
Confidence 46999999999999999999885 67888888863 2233333433 489999994 333 345665 5554
No 239
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=75.93 E-value=3.4 Score=43.68 Aligned_cols=68 Identities=10% Similarity=0.149 Sum_probs=48.1
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHHhc-CccEEEeChHHHHHHHhcccccCCCeeEE
Q 013173 223 YPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELER-GVDILVATPGRLVDLLERARVSLQMIRYL 301 (448)
Q Consensus 223 ~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~-~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~l 301 (448)
..++||+||+++-+..+++.+++. ++++..++|. ........+.. ..+|||||. .+. ..+++. +++|
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~----g~~v~~lHg~-eR~~v~~~F~~g~~~VLVaTd-----v~e-~GIDip-v~~V 477 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA----GKRVIQLNRK-SYDTEYPKCKNGDWDFVITTD-----ISE-MGANFG-ASRV 477 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECSS-SHHHHGGGGGTCCCSEEEECG-----GGG-TTCCCC-CSEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCeEEEeChH-HHHHHHHHHHCCCceEEEECc-----hhh-cceeeC-CcEE
Confidence 356999999999999999988875 6788888884 33333333433 479999994 333 345677 7776
Q ss_pred E
Q 013173 302 A 302 (448)
Q Consensus 302 V 302 (448)
|
T Consensus 478 I 478 (673)
T 2wv9_A 478 I 478 (673)
T ss_dssp E
T ss_pred E
Confidence 6
No 240
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=75.58 E-value=3.2 Score=45.24 Aligned_cols=18 Identities=28% Similarity=0.377 Sum_probs=15.4
Q ss_pred CCCeeEEccCCCCccchh
Q 013173 182 GRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 182 g~d~lv~a~TGsGKT~~~ 199 (448)
..++++++++|+|||...
T Consensus 191 ~~~vlL~G~pG~GKT~la 208 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIV 208 (854)
T ss_dssp CCCCEEEECTTSCHHHHH
T ss_pred CCceEEEcCCCCCHHHHH
Confidence 357999999999999854
No 241
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=75.53 E-value=1.3 Score=43.10 Aligned_cols=25 Identities=32% Similarity=0.607 Sum_probs=20.2
Q ss_pred HHhhHhCCCC--eeEEccCCCCccchh
Q 013173 175 AIPISIGGRD--LMACAQTGSGKTAAF 199 (448)
Q Consensus 175 ~i~~i~~g~d--~lv~a~TGsGKT~~~ 199 (448)
.+..++.|.| +++.++||||||...
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 3456678888 889999999999764
No 242
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=75.25 E-value=5.5 Score=37.62 Aligned_cols=18 Identities=28% Similarity=0.377 Sum_probs=14.5
Q ss_pred CCCeeEEccCCCCccchh
Q 013173 182 GRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 182 g~d~lv~a~TGsGKT~~~ 199 (448)
++-+++++++|+|||+..
T Consensus 104 ~~vi~ivG~~GsGKTTl~ 121 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSC 121 (306)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CeEEEEEcCCCChHHHHH
Confidence 345789999999999853
No 243
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=75.15 E-value=54 Score=30.60 Aligned_cols=185 Identities=12% Similarity=0.091 Sum_probs=91.6
Q ss_pred ceEEEEcCcH---HHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHH----Hh--cCccEEEeChH--HHHHHHhccc
Q 013173 224 PLALILAPTR---ELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRE----LE--RGVDILVATPG--RLVDLLERAR 292 (448)
Q Consensus 224 ~~~lil~Ptr---eL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~----l~--~~~~Ilv~Tp~--~l~~~l~~~~ 292 (448)
+++.+++|.. ....++..-+++.+...++.+.++........+... +. .++|-||.+|. .....++.
T Consensus 4 ~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~~~~~~~~~~-- 81 (350)
T 3h75_A 4 TSVVFLNPGNSTETFWVSYSQFMQAAARDLGLDLRILYAERDPQNTLQQARELFQGRDKPDYLMLVNEQYVAPQILRL-- 81 (350)
T ss_dssp CEEEEEECSCTTCHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEECCSSHHHHHHHH--
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHHcCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeCchhhHHHHHHH--
Confidence 3466666653 345566666666665567888887776665554333 23 37786665552 23333332
Q ss_pred ccCCCeeEEEEcCCccc-------------------ccCCC----HHHHHHHHHHcCCCCCCC-cEEEEEeccCchHH-H
Q 013173 293 VSLQMIRYLALDEADRM-------------------LDMGF----EPQIRKIVQQMDMPPPGM-RQTMLFSATFPKEI-Q 347 (448)
Q Consensus 293 ~~l~~v~~lVlDEah~l-------------------l~~gf----~~~i~~i~~~l~~~~~~~-~q~i~~SAT~~~~v-~ 347 (448)
+.-..+.+|++|-...- ..... ....+.+++.....+... +++++++....... .
T Consensus 82 ~~~~giPvV~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~g~~~~~g~~~~i~~i~g~~~~~~~~ 161 (350)
T 3h75_A 82 SQGSGIKLFIVNSPLTLDQRELIGQSRQNYSDWIGSMVGDDEEAGYRMLKELLHKLGPVPAGHGIELLAFSGLKVTPAAQ 161 (350)
T ss_dssp HTTSCCEEEEEESCCCTTTC------------CEEEEECCHHHHHHHHHHHHHHHHCCCCSSCCEEEEEEESCTTSHHHH
T ss_pred HHhCCCcEEEEcCCCChHHHhhhcCCchhccceeeeecCChHHHHHHHHHHHHHHhhhhcCCCCceEEEEeCCCCCHHHH
Confidence 11234555666532111 01111 123334444432111223 67888876643221 1
Q ss_pred HHHH---hhhcCcEEEEecccccccCceeE-EEEEec-c-cchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHH
Q 013173 348 RLAS---DFLANYIFLAVGRVGSSTDLIVQ-RVEFVH-E-SDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALE 421 (448)
Q Consensus 348 ~l~~---~~l~~~~~i~v~~~~~~~~~i~q-~~~~~~-~-~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~ 421 (448)
.-.. ..+.+. ..+.. .+.... + ..-...+.++|... ...+.|||.+-..|..+.
T Consensus 162 ~R~~Gf~~~l~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~L~~~--------~~~~aI~~~~d~~a~g~~ 221 (350)
T 3h75_A 162 LRERGLRRALAEH------------PQVHLRQLVYGEWNRERAYRQAQQLLKRY--------PKTQLVWSANDEMALGAM 221 (350)
T ss_dssp HHHHHHHHHHHHC------------TTEEEEEEEECTTCHHHHHHHHHHHHHHC--------TTEEEEEESSHHHHHHHH
T ss_pred HHHHHHHHHHHHC------------CCeEEEEEeeCCCcHHHHHHHHHHHHHhC--------CCcCEEEECChHHHHHHH
Confidence 1111 112111 00111 111111 1 12233445555543 456899999999999999
Q ss_pred HHHHHCCCC
Q 013173 422 HWLYMNGFP 430 (448)
Q Consensus 422 ~~L~~~g~~ 430 (448)
+.|...|+.
T Consensus 222 ~al~~~G~~ 230 (350)
T 3h75_A 222 QAARELGRK 230 (350)
T ss_dssp HHHHHTTCC
T ss_pred HHHHHcCCC
Confidence 999999875
No 244
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=74.84 E-value=16 Score=34.09 Aligned_cols=19 Identities=26% Similarity=0.247 Sum_probs=15.0
Q ss_pred CCCCeeEEccCCCCccchh
Q 013173 181 GGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~ 199 (448)
.++-+.+++++|+|||+..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~ 115 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTA 115 (295)
T ss_dssp SSEEEEEECCTTTTHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4556778899999999853
No 245
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=74.83 E-value=13 Score=37.34 Aligned_cols=74 Identities=18% Similarity=0.065 Sum_probs=51.0
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHH---HHhc-CccEEEeChHHHHHHHhcccccCCCeeE
Q 013173 225 LALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLR---ELER-GVDILVATPGRLVDLLERARVSLQMIRY 300 (448)
Q Consensus 225 ~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~~-~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~ 300 (448)
..+|++..++-+..+.+.+... +.++..++|+.+..+... .+.. ..+|||||+..+-. .+++.++.+
T Consensus 349 ~~~ivf~~~~~~~~l~~~L~~~----~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~-----GiDip~v~~ 419 (510)
T 2oca_A 349 NAFVMFKHVSHGKAIFDLIKNE----YDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFST-----GISVKNLHH 419 (510)
T ss_dssp EEEEEESSHHHHHHHHHHHHTT----CSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHH-----SCCCCSEEE
T ss_pred CeEEEEecHHHHHHHHHHHHHc----CCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhc-----ccccccCcE
Confidence 3555555577777777777764 347888889887655433 2223 47899999765532 468999999
Q ss_pred EEEcCCc
Q 013173 301 LALDEAD 307 (448)
Q Consensus 301 lVlDEah 307 (448)
||+..++
T Consensus 420 vi~~~~~ 426 (510)
T 2oca_A 420 VVLAHGV 426 (510)
T ss_dssp EEESSCC
T ss_pred EEEeCCC
Confidence 9998877
No 246
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=74.28 E-value=3.6 Score=48.74 Aligned_cols=28 Identities=25% Similarity=0.112 Sum_probs=22.1
Q ss_pred hCCCCeeEEccCCCCccchhhhhHHHHH
Q 013173 180 IGGRDLMACAQTGSGKTAAFCFPIISGI 207 (448)
Q Consensus 180 ~~g~d~lv~a~TGsGKT~~~~lpil~~l 207 (448)
..++++++++++|+|||...+..+.+.+
T Consensus 1079 ~~g~~vll~G~~GtGKT~la~~~~~ea~ 1106 (2050)
T 3cmu_A 1079 PMGRIVEIYGPESSGKTTLTLQVIAAAQ 1106 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3678999999999999997665555444
No 247
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=73.68 E-value=1.6 Score=41.84 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=19.5
Q ss_pred HhhHhCCCC--eeEEccCCCCccchh
Q 013173 176 IPISIGGRD--LMACAQTGSGKTAAF 199 (448)
Q Consensus 176 i~~i~~g~d--~lv~a~TGsGKT~~~ 199 (448)
+..++.|.| +++.++||||||...
T Consensus 70 v~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 70 VKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCeEEEEEECCCCCCCceEe
Confidence 345668888 889999999999864
No 248
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=73.07 E-value=4 Score=31.87 Aligned_cols=37 Identities=11% Similarity=0.117 Sum_probs=32.4
Q ss_pred CCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCCH
Q 013173 404 QALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQ 440 (448)
Q Consensus 404 ~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q 440 (448)
..++||||.+-..+...+..|...|+....+.|++..
T Consensus 56 ~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~~ 92 (110)
T 2k0z_A 56 DKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVYD 92 (110)
T ss_dssp SSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGGG
T ss_pred CCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHHH
Confidence 6789999999999999999999999976788888753
No 249
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=73.06 E-value=3.9 Score=33.90 Aligned_cols=36 Identities=8% Similarity=0.073 Sum_probs=31.6
Q ss_pred CCcEEEEeCchhhHHHHHHHHHHCCC-CeEEecCCCC
Q 013173 404 QALTLVFVETKKGADALEHWLYMNGF-PATTIHGDRT 439 (448)
Q Consensus 404 ~~~tlVF~~t~~~a~~l~~~L~~~g~-~~~~iHg~~~ 439 (448)
..++||||.+-..+...+..|...|+ ++..|.|++.
T Consensus 80 ~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 80 ERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp -CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 56799999998889999999999999 5999999884
No 250
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=72.94 E-value=3.9 Score=38.71 Aligned_cols=23 Identities=22% Similarity=0.115 Sum_probs=17.7
Q ss_pred CCCeeEEccCCCCccchhhhhHH
Q 013173 182 GRDLMACAQTGSGKTAAFCFPII 204 (448)
Q Consensus 182 g~d~lv~a~TGsGKT~~~~lpil 204 (448)
|.-+++.+++|+|||...+-.+.
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46689999999999986544443
No 251
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=72.85 E-value=2.9 Score=40.18 Aligned_cols=22 Identities=18% Similarity=-0.117 Sum_probs=17.0
Q ss_pred CCCeeEEccCCCCccchhhhhH
Q 013173 182 GRDLMACAQTGSGKTAAFCFPI 203 (448)
Q Consensus 182 g~d~lv~a~TGsGKT~~~~lpi 203 (448)
|.-+++.+++|+|||...+-.+
T Consensus 122 G~i~~I~G~~GsGKTtla~~la 143 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLC 143 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4568999999999998654433
No 252
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=72.47 E-value=1.7 Score=42.29 Aligned_cols=24 Identities=29% Similarity=0.552 Sum_probs=19.3
Q ss_pred HhhHhCCCC--eeEEccCCCCccchh
Q 013173 176 IPISIGGRD--LMACAQTGSGKTAAF 199 (448)
Q Consensus 176 i~~i~~g~d--~lv~a~TGsGKT~~~ 199 (448)
+..++.|.| +++.++||||||...
T Consensus 82 v~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 82 LQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 445678887 789999999999764
No 253
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=72.30 E-value=3.6 Score=36.50 Aligned_cols=37 Identities=22% Similarity=0.063 Sum_probs=27.8
Q ss_pred CHHHHhHHhhHhCCCCeeEEccCCCCccchhhhhHHHHH
Q 013173 169 TPVQRHAIPISIGGRDLMACAQTGSGKTAAFCFPIISGI 207 (448)
Q Consensus 169 t~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~~lpil~~l 207 (448)
+.-|..++..+..|.-+.+.+|+|||||+. +-+|..+
T Consensus 9 ~~g~~~~l~~i~~Ge~~~liG~nGsGKSTL--l~~l~Gl 45 (208)
T 3b85_A 9 TLGQKHYVDAIDTNTIVFGLGPAGSGKTYL--AMAKAVQ 45 (208)
T ss_dssp SHHHHHHHHHHHHCSEEEEECCTTSSTTHH--HHHHHHH
T ss_pred CHhHHHHHHhccCCCEEEEECCCCCCHHHH--HHHHhcC
Confidence 344667777777888899999999999994 4444444
No 254
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=72.21 E-value=7.2 Score=38.35 Aligned_cols=22 Identities=14% Similarity=0.007 Sum_probs=17.0
Q ss_pred CCCeeEEccCCCCccchhhhhH
Q 013173 182 GRDLMACAQTGSGKTAAFCFPI 203 (448)
Q Consensus 182 g~d~lv~a~TGsGKT~~~~lpi 203 (448)
|.-+.+.+++|+|||......+
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHH
Confidence 4568999999999998654333
No 255
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=72.20 E-value=5.4 Score=38.57 Aligned_cols=23 Identities=30% Similarity=0.189 Sum_probs=18.2
Q ss_pred CCCCeeEEccCCCCccchhhhhH
Q 013173 181 GGRDLMACAQTGSGKTAAFCFPI 203 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~~lpi 203 (448)
.|+-+++.++.|+|||...+-.+
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la 84 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVI 84 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 46779999999999999754433
No 256
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=72.17 E-value=1.6 Score=42.23 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=19.3
Q ss_pred HhhHhCCCC--eeEEccCCCCccchh
Q 013173 176 IPISIGGRD--LMACAQTGSGKTAAF 199 (448)
Q Consensus 176 i~~i~~g~d--~lv~a~TGsGKT~~~ 199 (448)
+..++.|.| +++.++||||||...
T Consensus 87 v~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 87 VDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hhHhhCCCceEEEEecCCCCCCCeEE
Confidence 345567887 789999999999874
No 257
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=71.96 E-value=1.8 Score=41.48 Aligned_cols=25 Identities=36% Similarity=0.561 Sum_probs=20.5
Q ss_pred HHhhHhCCCC--eeEEccCCCCccchh
Q 013173 175 AIPISIGGRD--LMACAQTGSGKTAAF 199 (448)
Q Consensus 175 ~i~~i~~g~d--~lv~a~TGsGKT~~~ 199 (448)
.+..++.|.| +++.++||||||...
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 72 LVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 4556778888 789999999999764
No 258
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=71.91 E-value=2.5 Score=32.94 Aligned_cols=37 Identities=14% Similarity=0.293 Sum_probs=32.7
Q ss_pred CCcEEEEeCchhhHHHHHHHHHHCCCC-eEEecCCCCH
Q 013173 404 QALTLVFVETKKGADALEHWLYMNGFP-ATTIHGDRTQ 440 (448)
Q Consensus 404 ~~~tlVF~~t~~~a~~l~~~L~~~g~~-~~~iHg~~~q 440 (448)
..+++|||.+-..+...+..|...|++ +..+.|++..
T Consensus 58 ~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~ 95 (108)
T 1gmx_A 58 DTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEA 95 (108)
T ss_dssp TSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHHH
T ss_pred CCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHHH
Confidence 678999999988999999999999995 8899998754
No 259
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=71.75 E-value=1.9 Score=41.78 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=18.8
Q ss_pred hhHhCCCC--eeEEccCCCCccchh
Q 013173 177 PISIGGRD--LMACAQTGSGKTAAF 199 (448)
Q Consensus 177 ~~i~~g~d--~lv~a~TGsGKT~~~ 199 (448)
..++.|.| +++.++||||||...
T Consensus 83 ~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 83 DAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhCCCceeEEeecCCCCCCCEEe
Confidence 34568887 789999999999864
No 260
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=71.74 E-value=1.8 Score=41.87 Aligned_cols=24 Identities=42% Similarity=0.551 Sum_probs=19.4
Q ss_pred HhhHhCCCC--eeEEccCCCCccchh
Q 013173 176 IPISIGGRD--LMACAQTGSGKTAAF 199 (448)
Q Consensus 176 i~~i~~g~d--~lv~a~TGsGKT~~~ 199 (448)
+..++.|.| +++.++||||||...
T Consensus 70 v~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 70 IDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHcCCccceeeecCCCCCCCeEE
Confidence 345668887 789999999999864
No 261
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=71.69 E-value=1.4 Score=38.93 Aligned_cols=48 Identities=15% Similarity=0.090 Sum_probs=29.4
Q ss_pred eeEEEEcCCcccccCC--CHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHH
Q 013173 298 IRYLALDEADRMLDMG--FEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQ 347 (448)
Q Consensus 298 v~~lVlDEah~ll~~g--f~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~ 347 (448)
-.+|||||||.++... ..+. .+++..+........++|+++.. +..+.
T Consensus 88 ~~vliIDEAq~l~~~~~~~~e~-~rll~~l~~~r~~~~~iil~tq~-~~~l~ 137 (199)
T 2r2a_A 88 GSIVIVDEAQDVWPARSAGSKI-PENVQWLNTHRHQGIDIFVLTQG-PKLLD 137 (199)
T ss_dssp TCEEEETTGGGTSBCCCTTCCC-CHHHHGGGGTTTTTCEEEEEESC-GGGBC
T ss_pred ceEEEEEChhhhccCccccchh-HHHHHHHHhcCcCCeEEEEECCC-HHHHh
Confidence 3579999999985321 1111 24556665555566788888876 44433
No 262
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=71.66 E-value=1.8 Score=42.01 Aligned_cols=25 Identities=32% Similarity=0.607 Sum_probs=19.9
Q ss_pred HHhhHhCCCC--eeEEccCCCCccchh
Q 013173 175 AIPISIGGRD--LMACAQTGSGKTAAF 199 (448)
Q Consensus 175 ~i~~i~~g~d--~lv~a~TGsGKT~~~ 199 (448)
.+..++.|.| +++.++||||||...
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEECCCCCCCceEe
Confidence 3445678888 788999999999864
No 263
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=71.51 E-value=1.9 Score=41.86 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=18.9
Q ss_pred hhHhCCCC--eeEEccCCCCccchh
Q 013173 177 PISIGGRD--LMACAQTGSGKTAAF 199 (448)
Q Consensus 177 ~~i~~g~d--~lv~a~TGsGKT~~~ 199 (448)
..++.|.| +++.++||||||...
T Consensus 74 ~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 74 DDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhCCCcceEEEECCCCCCcceEe
Confidence 35668887 789999999999864
No 264
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=71.47 E-value=1.8 Score=42.17 Aligned_cols=24 Identities=33% Similarity=0.548 Sum_probs=19.3
Q ss_pred HhhHhCCCC--eeEEccCCCCccchh
Q 013173 176 IPISIGGRD--LMACAQTGSGKTAAF 199 (448)
Q Consensus 176 i~~i~~g~d--~lv~a~TGsGKT~~~ 199 (448)
+..++.|.| +++.++||||||...
T Consensus 94 v~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 94 VDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 345678887 789999999999864
No 265
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=71.38 E-value=4.4 Score=41.99 Aligned_cols=42 Identities=31% Similarity=0.342 Sum_probs=30.1
Q ss_pred CCCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEecc
Q 013173 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSAT 341 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT 341 (448)
+.+-+++++||.-.-+|...+..+.+.+..+ ...+ ++++.+-
T Consensus 496 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~----~~~~-tvi~itH 537 (582)
T 3b5x_A 496 LRDAPVLILDEATSALDTESERAIQAALDEL----QKNK-TVLVIAH 537 (582)
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHH----cCCC-EEEEEec
Confidence 5667899999999999977777777777776 2233 5555543
No 266
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=71.29 E-value=1.9 Score=41.94 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=18.9
Q ss_pred hhHhCCCC--eeEEccCCCCccchh
Q 013173 177 PISIGGRD--LMACAQTGSGKTAAF 199 (448)
Q Consensus 177 ~~i~~g~d--~lv~a~TGsGKT~~~ 199 (448)
..++.|.| +++.++||||||...
T Consensus 78 ~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 78 TDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhCCCceEEEeecCCCCCCceEE
Confidence 34668887 789999999999864
No 267
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=71.25 E-value=1.9 Score=41.57 Aligned_cols=24 Identities=38% Similarity=0.509 Sum_probs=19.3
Q ss_pred HhhHhCCCC--eeEEccCCCCccchh
Q 013173 176 IPISIGGRD--LMACAQTGSGKTAAF 199 (448)
Q Consensus 176 i~~i~~g~d--~lv~a~TGsGKT~~~ 199 (448)
+..++.|.| +++.++||||||...
T Consensus 76 v~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 76 LEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhhcCeeEEEecccCCCceEee
Confidence 345668888 789999999999864
No 268
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=71.17 E-value=1.9 Score=41.83 Aligned_cols=25 Identities=32% Similarity=0.538 Sum_probs=20.1
Q ss_pred HHhhHhCCCC--eeEEccCCCCccchh
Q 013173 175 AIPISIGGRD--LMACAQTGSGKTAAF 199 (448)
Q Consensus 175 ~i~~i~~g~d--~lv~a~TGsGKT~~~ 199 (448)
.+..++.|.| +++.++||||||...
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 3445678888 789999999999864
No 269
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=71.09 E-value=1.9 Score=41.77 Aligned_cols=24 Identities=29% Similarity=0.531 Sum_probs=19.3
Q ss_pred HhhHhCCCC--eeEEccCCCCccchh
Q 013173 176 IPISIGGRD--LMACAQTGSGKTAAF 199 (448)
Q Consensus 176 i~~i~~g~d--~lv~a~TGsGKT~~~ 199 (448)
+..++.|.| +++.++||||||...
T Consensus 98 v~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 98 LRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhCCCceEEEEeCCCCCCceeee
Confidence 344568888 789999999999864
No 270
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=71.07 E-value=1.7 Score=42.19 Aligned_cols=24 Identities=38% Similarity=0.531 Sum_probs=19.4
Q ss_pred HhhHhCCCC--eeEEccCCCCccchh
Q 013173 176 IPISIGGRD--LMACAQTGSGKTAAF 199 (448)
Q Consensus 176 i~~i~~g~d--~lv~a~TGsGKT~~~ 199 (448)
+..++.|.| +++.++||||||...
T Consensus 81 v~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 81 LDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred HHHHhCCCceEEEEeCCCCCCCceEE
Confidence 445668887 789999999999864
No 271
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=71.05 E-value=1.9 Score=41.65 Aligned_cols=25 Identities=40% Similarity=0.601 Sum_probs=20.6
Q ss_pred HHhhHhCCCC--eeEEccCCCCccchh
Q 013173 175 AIPISIGGRD--LMACAQTGSGKTAAF 199 (448)
Q Consensus 175 ~i~~i~~g~d--~lv~a~TGsGKT~~~ 199 (448)
.+..++.|.| +++.++||||||...
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEec
Confidence 4566778888 789999999999864
No 272
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=71.02 E-value=2.7 Score=41.70 Aligned_cols=18 Identities=28% Similarity=0.399 Sum_probs=15.1
Q ss_pred CCCCeeEEccCCCCccch
Q 013173 181 GGRDLMACAQTGSGKTAA 198 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~ 198 (448)
.+.-+++++|||||||+.
T Consensus 166 ~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp SSEEEEEECSTTSCHHHH
T ss_pred cCCeEEEECCCCCCHHHH
Confidence 345689999999999994
No 273
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=70.98 E-value=11 Score=39.71 Aligned_cols=73 Identities=21% Similarity=0.259 Sum_probs=55.4
Q ss_pred EEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChH---HHHHHHhc---CccEEEeChHHHHHHHhcccccCCCee
Q 013173 226 ALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPIN---QQLRELER---GVDILVATPGRLVDLLERARVSLQMIR 299 (448)
Q Consensus 226 ~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~---~~~~~l~~---~~~Ilv~Tp~~l~~~l~~~~~~l~~v~ 299 (448)
.+|+++++.-+..+++.+.+. ++.+..++|+.+.. .+.+.+.. ..+|||||. .+ ...+++ .++
T Consensus 323 ~iIf~~s~~~ie~la~~L~~~----g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATd-----i~-e~GlDi-~v~ 391 (677)
T 3rc3_A 323 DCIVCFSKNDIYSVSRQIEIR----GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATD-----AI-GMGLNL-SIR 391 (677)
T ss_dssp EEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECG-----GG-GSSCCC-CBS
T ss_pred CEEEEcCHHHHHHHHHHHHhc----CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCc-----HH-HCCcCc-Ccc
Confidence 477799999888888888874 67889999999876 44555554 379999995 23 345678 899
Q ss_pred EEEEcCCccc
Q 013173 300 YLALDEADRM 309 (448)
Q Consensus 300 ~lVlDEah~l 309 (448)
+||.-.+.+.
T Consensus 392 ~VI~~~~~k~ 401 (677)
T 3rc3_A 392 RIIFYSLIKP 401 (677)
T ss_dssp EEEESCSBC-
T ss_pred EEEECCcccc
Confidence 9999888654
No 274
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=70.95 E-value=4.8 Score=38.38 Aligned_cols=58 Identities=22% Similarity=0.209 Sum_probs=48.0
Q ss_pred ecccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCCHH
Q 013173 379 VHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQ 441 (448)
Q Consensus 379 ~~~~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~ 441 (448)
+....|+..|-++|...... +.++|||++..+.-+-|.++|...++...-+.|.....
T Consensus 105 ~~~SGKf~~L~~LL~~l~~~-----~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~ 162 (328)
T 3hgt_A 105 AENSGKFSVLRDLINLVQEY-----ETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKS 162 (328)
T ss_dssp HHTCHHHHHHHHHHHHHTTS-----CEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC--
T ss_pred HHcCccHHHHHHHHHHHHhC-----CCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhh
Confidence 34678898888888876532 78999999999999999999999999999999885543
No 275
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=70.63 E-value=7.6 Score=36.19 Aligned_cols=69 Identities=13% Similarity=0.210 Sum_probs=48.2
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHH---hc-CccEEEeChHHHHHHHhcccccCCCee
Q 013173 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLREL---ER-GVDILVATPGRLVDLLERARVSLQMIR 299 (448)
Q Consensus 224 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~~-~~~Ilv~Tp~~l~~~l~~~~~~l~~v~ 299 (448)
.++||.+++++-+..+++.+. ++..++|+.+..+....+ .+ ..+|||+|. .+. ..+++..++
T Consensus 221 ~~~lvf~~~~~~~~~l~~~l~--------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~-~Gid~~~~~ 286 (337)
T 2z0m_A 221 KGVIVFVRTRNRVAKLVRLFD--------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTD-----VAS-RGLDIPLVE 286 (337)
T ss_dssp SSEEEECSCHHHHHHHHTTCT--------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECH-----HHH-TTCCCCCBS
T ss_pred CcEEEEEcCHHHHHHHHHHhh--------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcC-----ccc-cCCCccCCC
Confidence 459999999999887766554 356678887765554333 22 479999994 333 356888999
Q ss_pred EEEEcCC
Q 013173 300 YLALDEA 306 (448)
Q Consensus 300 ~lVlDEa 306 (448)
+||.-..
T Consensus 287 ~Vi~~~~ 293 (337)
T 2z0m_A 287 KVINFDA 293 (337)
T ss_dssp EEEESSC
T ss_pred EEEEecC
Confidence 8887443
No 276
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=70.59 E-value=3.5 Score=41.19 Aligned_cols=27 Identities=19% Similarity=-0.011 Sum_probs=19.7
Q ss_pred CCCCeeEEccCCCCccchhhhhHHHHH
Q 013173 181 GGRDLMACAQTGSGKTAAFCFPIISGI 207 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~~lpil~~l 207 (448)
.|.-+++.|++|+|||...+-.+.+..
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a 222 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMS 222 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHH
Confidence 455689999999999986555444433
No 277
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=70.49 E-value=1.8 Score=42.75 Aligned_cols=24 Identities=38% Similarity=0.515 Sum_probs=19.2
Q ss_pred HhhHhCCCC--eeEEccCCCCccchh
Q 013173 176 IPISIGGRD--LMACAQTGSGKTAAF 199 (448)
Q Consensus 176 i~~i~~g~d--~lv~a~TGsGKT~~~ 199 (448)
+..++.|.| +++.++||||||...
T Consensus 147 V~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 147 VQTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHHHhcCCceeEEeecCCCCCCCeEe
Confidence 345668887 789999999999864
No 278
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=70.38 E-value=1.8 Score=42.11 Aligned_cols=20 Identities=35% Similarity=0.400 Sum_probs=17.7
Q ss_pred HhCCCCeeEEccCCCCccch
Q 013173 179 SIGGRDLMACAQTGSGKTAA 198 (448)
Q Consensus 179 i~~g~d~lv~a~TGsGKT~~ 198 (448)
+..|..++++++||||||+.
T Consensus 172 i~~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTL 191 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHH
T ss_pred HhcCCEEEEECCCCCCHHHH
Confidence 44789999999999999994
No 279
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=70.18 E-value=1.8 Score=42.27 Aligned_cols=24 Identities=38% Similarity=0.595 Sum_probs=19.1
Q ss_pred HhhHhCCCC--eeEEccCCCCccchh
Q 013173 176 IPISIGGRD--LMACAQTGSGKTAAF 199 (448)
Q Consensus 176 i~~i~~g~d--~lv~a~TGsGKT~~~ 199 (448)
+..++.|.| +++.++||||||...
T Consensus 93 v~~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 93 IEEVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCceEEEEeecCCCCCcceec
Confidence 334667887 789999999999864
No 280
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=70.18 E-value=4.5 Score=29.82 Aligned_cols=36 Identities=11% Similarity=0.207 Sum_probs=30.2
Q ss_pred CCcEEEEeCchhhHHHHHHHHHHCCCC-eEEecCCCCH
Q 013173 404 QALTLVFVETKKGADALEHWLYMNGFP-ATTIHGDRTQ 440 (448)
Q Consensus 404 ~~~tlVF~~t~~~a~~l~~~L~~~g~~-~~~iHg~~~q 440 (448)
..+++|||.+-..+...+..|...|++ +..+ |++..
T Consensus 41 ~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~~ 77 (85)
T 2jtq_A 41 NDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLKD 77 (85)
T ss_dssp TSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETTT
T ss_pred CCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHHH
Confidence 678999999999999999999999996 5556 77643
No 281
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=70.09 E-value=2.9 Score=34.65 Aligned_cols=37 Identities=14% Similarity=0.182 Sum_probs=32.6
Q ss_pred CCcEEEEeCch--hhHHHHHHHHHHCCCCeEEecCCCCH
Q 013173 404 QALTLVFVETK--KGADALEHWLYMNGFPATTIHGDRTQ 440 (448)
Q Consensus 404 ~~~tlVF~~t~--~~a~~l~~~L~~~g~~~~~iHg~~~q 440 (448)
..++||||.+- ..+..++..|...|+++..+.|++..
T Consensus 72 ~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~~ 110 (144)
T 3nhv_A 72 EKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIEY 110 (144)
T ss_dssp TSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHHH
T ss_pred CCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHHH
Confidence 66799999997 68999999999999999999998754
No 282
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=69.99 E-value=2.9 Score=33.82 Aligned_cols=37 Identities=16% Similarity=0.109 Sum_probs=32.9
Q ss_pred CCcEEEEeCchhhHHHHHHHHHHCCCC-eEEecCCCCH
Q 013173 404 QALTLVFVETKKGADALEHWLYMNGFP-ATTIHGDRTQ 440 (448)
Q Consensus 404 ~~~tlVF~~t~~~a~~l~~~L~~~g~~-~~~iHg~~~q 440 (448)
..++||||.+-..+...+..|...|++ +..|.|++..
T Consensus 82 ~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~ 119 (129)
T 1tq1_A 82 SDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYSA 119 (129)
T ss_dssp TSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHHH
T ss_pred CCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHHH
Confidence 678999999989999999999999995 8899998754
No 283
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=69.87 E-value=1.9 Score=41.67 Aligned_cols=25 Identities=40% Similarity=0.602 Sum_probs=20.8
Q ss_pred HHhhHhCCCC--eeEEccCCCCccchh
Q 013173 175 AIPISIGGRD--LMACAQTGSGKTAAF 199 (448)
Q Consensus 175 ~i~~i~~g~d--~lv~a~TGsGKT~~~ 199 (448)
.+..++.|.| +++.++||||||...
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 5666778988 789999999999864
No 284
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=69.61 E-value=2.1 Score=34.38 Aligned_cols=37 Identities=19% Similarity=0.114 Sum_probs=32.2
Q ss_pred CCcEEEEeCchhh--HHHHHHHHHHCCCCeEEecCCCCH
Q 013173 404 QALTLVFVETKKG--ADALEHWLYMNGFPATTIHGDRTQ 440 (448)
Q Consensus 404 ~~~tlVF~~t~~~--a~~l~~~L~~~g~~~~~iHg~~~q 440 (448)
..++||||.+-.. +...+..|...|+++..+.|++..
T Consensus 71 ~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~~ 109 (124)
T 3flh_A 71 AKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALEG 109 (124)
T ss_dssp TSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHHH
T ss_pred CCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHHH
Confidence 6679999999777 899999999999998888888754
No 285
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=69.45 E-value=0.79 Score=52.54 Aligned_cols=31 Identities=26% Similarity=0.328 Sum_probs=25.3
Q ss_pred CCCeeEEEEcCCcccccCCCHHHHHHHHHHc
Q 013173 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQM 325 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l 325 (448)
+++-+++||||+=--+|..-+..+.+.+..+
T Consensus 570 ~~~~~IliLDE~tSaLD~~te~~i~~~l~~~ 600 (1321)
T 4f4c_A 570 VRNPKILLLDEATSALDAESEGIVQQALDKA 600 (1321)
T ss_dssp TTCCSEEEEESTTTTSCTTTHHHHHHHHHHH
T ss_pred ccCCCEEEEecccccCCHHHHHHHHHHHHHH
Confidence 5677899999999889887777777777666
No 286
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=69.40 E-value=2 Score=42.39 Aligned_cols=25 Identities=40% Similarity=0.601 Sum_probs=20.8
Q ss_pred HHhhHhCCCC--eeEEccCCCCccchh
Q 013173 175 AIPISIGGRD--LMACAQTGSGKTAAF 199 (448)
Q Consensus 175 ~i~~i~~g~d--~lv~a~TGsGKT~~~ 199 (448)
.+..++.|.| +++.++||||||...
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 4566778988 789999999999874
No 287
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=69.33 E-value=3.2 Score=40.19 Aligned_cols=19 Identities=37% Similarity=0.349 Sum_probs=15.9
Q ss_pred CCCCeeEEccCCCCccchh
Q 013173 181 GGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~ 199 (448)
.|.-+++.+++|+|||...
T Consensus 60 ~G~i~~I~GppGsGKSTLa 78 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLA 78 (356)
T ss_dssp TTEEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3567899999999999854
No 288
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=69.28 E-value=2.1 Score=42.04 Aligned_cols=24 Identities=38% Similarity=0.515 Sum_probs=19.3
Q ss_pred HhhHhCCCC--eeEEccCCCCccchh
Q 013173 176 IPISIGGRD--LMACAQTGSGKTAAF 199 (448)
Q Consensus 176 i~~i~~g~d--~lv~a~TGsGKT~~~ 199 (448)
+..++.|.| +++.++||||||...
T Consensus 127 v~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 127 VQTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHHHhcCCceEEEEecCCCCCCCeEe
Confidence 345668887 889999999999864
No 289
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=69.22 E-value=2.2 Score=42.63 Aligned_cols=24 Identities=33% Similarity=0.533 Sum_probs=19.5
Q ss_pred HhhHhCCCC--eeEEccCCCCccchh
Q 013173 176 IPISIGGRD--LMACAQTGSGKTAAF 199 (448)
Q Consensus 176 i~~i~~g~d--~lv~a~TGsGKT~~~ 199 (448)
+..++.|.| +++.++||||||...
T Consensus 129 v~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 129 LDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 445678888 789999999999864
No 290
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=69.14 E-value=3 Score=37.36 Aligned_cols=53 Identities=21% Similarity=0.260 Sum_probs=30.8
Q ss_pred CCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013173 181 GGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF 246 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~ 246 (448)
.|.-+++.|++|+|||...+-.+.+.+...+ -.+++++ +-+...++...+..+
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~------------~~v~~~s-~E~~~~~~~~~~~~~ 81 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYG------------EPGVFVT-LEERARDLRREMASF 81 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHC------------CCEEEEE-SSSCHHHHHHHHHTT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcC------------CCceeec-ccCCHHHHHHHHHHc
Confidence 3567999999999999865443444333322 1255554 233345555555544
No 291
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=69.09 E-value=1.9 Score=42.34 Aligned_cols=22 Identities=32% Similarity=0.587 Sum_probs=18.3
Q ss_pred hHhCCCC--eeEEccCCCCccchh
Q 013173 178 ISIGGRD--LMACAQTGSGKTAAF 199 (448)
Q Consensus 178 ~i~~g~d--~lv~a~TGsGKT~~~ 199 (448)
.++.|.| +++.++||||||...
T Consensus 93 ~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 93 HLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp HHTTTCCEEEEEESCTTSSHHHHH
T ss_pred HhhcCceeeEeeecCCCCCCCeEe
Confidence 4568887 789999999999764
No 292
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=69.07 E-value=1.8 Score=42.14 Aligned_cols=25 Identities=36% Similarity=0.582 Sum_probs=20.3
Q ss_pred HHhhHhCCCC--eeEEccCCCCccchh
Q 013173 175 AIPISIGGRD--LMACAQTGSGKTAAF 199 (448)
Q Consensus 175 ~i~~i~~g~d--~lv~a~TGsGKT~~~ 199 (448)
.+..++.|.| +++.++||||||...
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 4556678888 788999999999864
No 293
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=69.02 E-value=3.3 Score=33.91 Aligned_cols=37 Identities=22% Similarity=0.223 Sum_probs=32.9
Q ss_pred CCcEEEEeCchhhHHHHHHHHHHCCC-CeEEecCCCCH
Q 013173 404 QALTLVFVETKKGADALEHWLYMNGF-PATTIHGDRTQ 440 (448)
Q Consensus 404 ~~~tlVF~~t~~~a~~l~~~L~~~g~-~~~~iHg~~~q 440 (448)
..++||||.+-..+...+..|...|+ ++..+.|++..
T Consensus 82 ~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~~ 119 (137)
T 1qxn_A 82 EKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMDK 119 (137)
T ss_dssp TSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHHH
T ss_pred CCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcHHH
Confidence 67899999999999999999999999 58899998754
No 294
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=68.98 E-value=25 Score=35.92 Aligned_cols=103 Identities=12% Similarity=0.085 Sum_probs=53.2
Q ss_pred cEEEEEeccCchHHHHHHHhhhcC-cEEE--EecccccccCceeEEEEEec-c---------cchHHHHHHHHHHHHhcC
Q 013173 333 RQTMLFSATFPKEIQRLASDFLAN-YIFL--AVGRVGSSTDLIVQRVEFVH-E---------SDKRSHLMDLLHAQVANG 399 (448)
Q Consensus 333 ~q~i~~SAT~~~~v~~l~~~~l~~-~~~i--~v~~~~~~~~~i~q~~~~~~-~---------~~k~~~L~~ll~~~~~~~ 399 (448)
+.+|++|||+.+ +..+...+--+ +... .....+++. ..+...++. + ..-...+.+.+......
T Consensus 316 ~svIltSaTL~~-~~~~~~~lGl~~~~~~~~~~~~~~spf--~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~i~~l~~~- 391 (551)
T 3crv_A 316 LSIILMSGTLPP-REYMEKVWGIKRNMLYLDVEREIQKRV--SGSYECYIGVDVTSKYDMRSDNMWKRYADYLLKIYFQ- 391 (551)
T ss_dssp CEEEEEESSCCC-HHHHHHTSCCCSCEEEEEHHHHTTSCC--SCEEEEEEECSCCCCTTTCCHHHHHHHHHHHHHHHHH-
T ss_pred ceEEEEeeCCCc-HHHHHHHhCCCCccccccceeecCCcC--CCceEEEEeCCCCCccccCCHHHHHHHHHHHHHHHHh-
Confidence 679999999986 34344333222 2211 011222332 222222221 1 01123445544443321
Q ss_pred CCCCCCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCCHHHHHH
Q 013173 400 VHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSI 445 (448)
Q Consensus 400 ~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~ 445 (448)
..+.+|||++|....+.+++. .+.++..=..+++..++.+
T Consensus 392 ---~~g~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~~~~~~~ 431 (551)
T 3crv_A 392 ---AKANVLVVFPSYEIMDRVMSR---ISLPKYVESEDSSVEDLYS 431 (551)
T ss_dssp ---CSSEEEEEESCHHHHHHHHTT---CCSSEEECCSSCCHHHHHH
T ss_pred ---CCCCEEEEecCHHHHHHHHHh---cCCcEEEcCCCCCHHHHHH
Confidence 166899999999999999873 4555544334566555544
No 295
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=68.90 E-value=6.9 Score=39.00 Aligned_cols=67 Identities=13% Similarity=0.148 Sum_probs=46.7
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHHhc-CccEEEeChHHHHHHHhcccccCCCeeEEE
Q 013173 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELER-GVDILVATPGRLVDLLERARVSLQMIRYLA 302 (448)
Q Consensus 224 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~-~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lV 302 (448)
.++||.+|++.-|..+++.+++. ++.+..+++... ......+.. ..+|||||. .+. ..+++.. .+||
T Consensus 189 ~~~lVF~~s~~~a~~l~~~L~~~----g~~~~~lh~~~~-~~~~~~f~~g~~~vLVaT~-----v~~-~GiDip~-~~VI 256 (451)
T 2jlq_A 189 GKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTF-DTEYPKTKLTDWDFVVTTD-----ISE-MGANFRA-GRVI 256 (451)
T ss_dssp SCEEEECSSHHHHHHHHHHHHTT----TCCEEEECTTTH-HHHGGGGGSSCCSEEEECG-----GGG-SSCCCCC-SEEE
T ss_pred CCEEEEcCCHHHHHHHHHHHHHc----CCeEEECCHHHH-HHHHHhhccCCceEEEECC-----HHH-hCcCCCC-CEEE
Confidence 36999999999999999998874 567777777654 223333333 479999994 333 3456777 6665
No 296
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=68.64 E-value=3.3 Score=33.79 Aligned_cols=37 Identities=8% Similarity=0.005 Sum_probs=32.7
Q ss_pred CCcEEEEeCchhhHHHHHHHHHHCCCC-eEEecCCCCH
Q 013173 404 QALTLVFVETKKGADALEHWLYMNGFP-ATTIHGDRTQ 440 (448)
Q Consensus 404 ~~~tlVF~~t~~~a~~l~~~L~~~g~~-~~~iHg~~~q 440 (448)
..++||||.+-..+..++..|...|+. +..+.|++..
T Consensus 86 ~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~~ 123 (139)
T 2hhg_A 86 DKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFGA 123 (139)
T ss_dssp SSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHHHH
T ss_pred CCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCHHH
Confidence 677999999999999999999999996 9999988654
No 297
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=68.50 E-value=2.2 Score=42.30 Aligned_cols=25 Identities=40% Similarity=0.599 Sum_probs=20.8
Q ss_pred HHhhHhCCCC--eeEEccCCCCccchh
Q 013173 175 AIPISIGGRD--LMACAQTGSGKTAAF 199 (448)
Q Consensus 175 ~i~~i~~g~d--~lv~a~TGsGKT~~~ 199 (448)
.|..++.|.| +++.++||||||...
T Consensus 130 lv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 130 LIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 5566778988 789999999999864
No 298
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=68.09 E-value=47 Score=29.92 Aligned_cols=185 Identities=14% Similarity=0.111 Sum_probs=84.9
Q ss_pred EEEEcCcH--HHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHH----HhcCccEEEeChHH-HHHHHhcccccCCCe
Q 013173 226 ALILAPTR--ELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRE----LERGVDILVATPGR-LVDLLERARVSLQMI 298 (448)
Q Consensus 226 ~lil~Ptr--eL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~----l~~~~~Ilv~Tp~~-l~~~l~~~~~~l~~v 298 (448)
+-+++|.. ....++...+++.+...++.+.++........+... +..++|-+|..|.. ....++. +.-..+
T Consensus 11 Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~--~~~~~i 88 (291)
T 3egc_A 11 VGLIVSDIENVFFAEVASGVESEARHKGYSVLLANTAEDIVREREAVGQFFERRVDGLILAPSEGEHDYLRT--ELPKTF 88 (291)
T ss_dssp EEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCSSCCHHHHH--SSCTTS
T ss_pred EEEEECCCcchHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCCChHHHHH--hhccCC
Confidence 44444432 233445555555555567888777766555444322 23467766655432 1122221 112344
Q ss_pred eEEEEcCCcc-----cccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCch-HHHHHHHhh---hcCcEEEEeccccccc
Q 013173 299 RYLALDEADR-----MLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPK-EIQRLASDF---LANYIFLAVGRVGSST 369 (448)
Q Consensus 299 ~~lVlDEah~-----ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~-~v~~l~~~~---l~~~~~i~v~~~~~~~ 369 (448)
-+|++|.... ............+.++|.. ...+++.+++..... ....-..-| +.+. +...
T Consensus 89 PvV~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~--~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~--------g~~~ 158 (291)
T 3egc_A 89 PIVAVNRELRIPGCGAVLSENVRGARTAVEYLIA--RGHTRIGAIVGSAGLMTSRERLKGFRAAMSAA--------GLPV 158 (291)
T ss_dssp CEEEESSCCCCTTCEEEEECHHHHHHHHHHHHHH--TTCCSEEEECSCTTSHHHHHHHHHHHHHHHHT--------TCCC
T ss_pred CEEEEecccCCCCCCEEEECcHHHHHHHHHHHHH--cCCCEEEEEeCCCCCcCHHHHHHHHHHHHHHc--------CCCC
Confidence 5566654321 0111223334444444422 134567777766422 112211112 2111 0010
Q ss_pred CceeEEEEEecccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCC
Q 013173 370 DLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFP 430 (448)
Q Consensus 370 ~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~ 430 (448)
..............-...+.++|... ..++-|||.+-..|..+.+.|...|+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~ai~~~~d~~a~g~~~al~~~g~~ 211 (291)
T 3egc_A 159 RQEWIAAGGVRADNGRDGAIKVLTGA--------DRPTALLTSSHRITEGAMQALNVLGLR 211 (291)
T ss_dssp CGGGEEC------CCHHHHHHHHTC---------CCCSEEEESSHHHHHHHHHHHHHHTCC
T ss_pred CHHHeEeCCCChhHHHHHHHHHHhCC--------CCCcEEEECCcHHHHHHHHHHHHcCCC
Confidence 00000000111222334555555432 456789999999999999999988764
No 299
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=67.92 E-value=3.8 Score=33.48 Aligned_cols=37 Identities=8% Similarity=0.179 Sum_probs=32.6
Q ss_pred CCcEEEEeCchhhHHHHHHHHHHCCCC-eEEecCCCCH
Q 013173 404 QALTLVFVETKKGADALEHWLYMNGFP-ATTIHGDRTQ 440 (448)
Q Consensus 404 ~~~tlVF~~t~~~a~~l~~~L~~~g~~-~~~iHg~~~q 440 (448)
..++||||.+-..+...+..|...|++ +..|.|++..
T Consensus 91 ~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~ 128 (139)
T 3d1p_A 91 AKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSMND 128 (139)
T ss_dssp TSEEEEECSSSHHHHHHHHHHHTTTCCSEEECTTHHHH
T ss_pred CCeEEEECCCCchHHHHHHHHHHcCCCCeEEeCCcHHH
Confidence 677999999999999999999999995 8889888654
No 300
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=67.87 E-value=11 Score=39.24 Aligned_cols=67 Identities=13% Similarity=0.169 Sum_probs=46.8
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHHhc-CccEEEeChHHHHHHHhcccccCCCeeEEE
Q 013173 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELER-GVDILVATPGRLVDLLERARVSLQMIRYLA 302 (448)
Q Consensus 224 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~-~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lV 302 (448)
.++||.++|++-|..+++.+++. ++++..+++. ........+.. ..+|||||. .+. ..+++. +++||
T Consensus 356 ~~~LVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~-~R~~~l~~F~~g~~~VLVaTd-----v~~-rGiDi~-v~~VI 423 (618)
T 2whx_A 356 GKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRK-TFDTEYPKTKLTDWDFVVTTD-----ISE-MGANFR-AGRVI 423 (618)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTT-THHHHTTHHHHSCCSEEEECG-----GGG-TTCCCC-CSEEE
T ss_pred CCEEEEECChhHHHHHHHHHHHc----CCcEEEEChH-HHHHHHHhhcCCCcEEEEECc-----HHH-cCcccC-ceEEE
Confidence 46999999999999999999885 5678888875 32333334433 479999995 333 345664 77763
No 301
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=67.82 E-value=5.6 Score=41.91 Aligned_cols=67 Identities=16% Similarity=0.179 Sum_probs=49.2
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEE
Q 013173 222 VYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYL 301 (448)
Q Consensus 222 ~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~l 301 (448)
...++||.++|++-+..+++.+++. ++++..++|+.+..+ ....+.+|||||. .+.. .+++. |++|
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~----g~~v~~lHG~l~q~e---r~~~~~~VLVATd-----Vaer-GIDId-V~~V 460 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGL----GINAVAYYRGLDVSV---IPTIGDVVVVATD-----ALMT-GYTGD-FDSV 460 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECTTSCGGG---SCSSSCEEEEECT-----THHH-HCCCC-BSEE
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhC----CCcEEEecCCCCHHH---HHhCCCcEEEECC-----hHHc-cCCCC-CcEE
Confidence 3457999999999999999988874 678899999987553 1234569999994 3333 34564 7776
Q ss_pred E
Q 013173 302 A 302 (448)
Q Consensus 302 V 302 (448)
|
T Consensus 461 I 461 (666)
T 3o8b_A 461 I 461 (666)
T ss_dssp E
T ss_pred E
Confidence 6
No 302
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=67.63 E-value=2.2 Score=41.70 Aligned_cols=25 Identities=36% Similarity=0.547 Sum_probs=20.2
Q ss_pred HHhhHhCCCC--eeEEccCCCCccchh
Q 013173 175 AIPISIGGRD--LMACAQTGSGKTAAF 199 (448)
Q Consensus 175 ~i~~i~~g~d--~lv~a~TGsGKT~~~ 199 (448)
.+..++.|.| +++.++||||||...
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceEe
Confidence 4556678888 789999999999864
No 303
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=67.54 E-value=1.7 Score=37.36 Aligned_cols=19 Identities=16% Similarity=0.193 Sum_probs=16.2
Q ss_pred CCCCeeEEccCCCCccchh
Q 013173 181 GGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~ 199 (448)
.|+-+++++|+|||||+..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5677899999999999953
No 304
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=67.14 E-value=2 Score=41.11 Aligned_cols=27 Identities=33% Similarity=0.534 Sum_probs=20.3
Q ss_pred HhCCCCeeEEccCCCCccchhhhhHHHHH
Q 013173 179 SIGGRDLMACAQTGSGKTAAFCFPIISGI 207 (448)
Q Consensus 179 i~~g~d~lv~a~TGsGKT~~~~lpil~~l 207 (448)
+..|..+.++++||||||+. +-+|..+
T Consensus 168 i~~g~~v~i~G~~GsGKTTl--l~~l~g~ 194 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTY--IKSIMEF 194 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHH--HHHGGGG
T ss_pred ccCCCEEEEECCCCCCHHHH--HHHHhCC
Confidence 34688999999999999993 3344443
No 305
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=67.13 E-value=1.7 Score=43.31 Aligned_cols=55 Identities=11% Similarity=0.158 Sum_probs=35.2
Q ss_pred ccCCCcccCCCCHHHHHHHHHC---CCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchh
Q 013173 142 PAVNTFAEIDLGEALNLNIRRC---KYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 142 ~~~~~f~~l~L~~~l~~~l~~~---~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~ 199 (448)
.|..+|++.+--+..++.|.+. -+..|.-++..-++ .-+-+++.+|.|||||+..
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~---~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIR---APKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCC---CCCEEEEESCTTSSHHHHH
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCeeEEECcCCCCHHHHH
Confidence 3456899998777777766542 12233333333222 2467999999999999853
No 306
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=67.03 E-value=4.2 Score=33.05 Aligned_cols=36 Identities=14% Similarity=0.263 Sum_probs=32.0
Q ss_pred CCcEEEEeCchhhHHHHHHHHHHCCCC-eEEecCCCC
Q 013173 404 QALTLVFVETKKGADALEHWLYMNGFP-ATTIHGDRT 439 (448)
Q Consensus 404 ~~~tlVF~~t~~~a~~l~~~L~~~g~~-~~~iHg~~~ 439 (448)
..++||||.+=..+...+..|...|+. +..+.|++.
T Consensus 74 ~~~ivv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~ 110 (134)
T 1vee_A 74 NTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAE 110 (134)
T ss_dssp GCEEEEECSSSTTHHHHHHHHHHHTCSEEEECTTTTT
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHcCCcceEEecCCcc
Confidence 678999999988899999999999995 889999883
No 307
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=66.48 E-value=3.5 Score=40.02 Aligned_cols=71 Identities=14% Similarity=0.119 Sum_probs=45.4
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHH---hc-CccEEEeChHHHHHHHhcccccCCCee
Q 013173 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLREL---ER-GVDILVATPGRLVDLLERARVSLQMIR 299 (448)
Q Consensus 224 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~~-~~~Ilv~Tp~~l~~~l~~~~~~l~~v~ 299 (448)
.++||.+++++-+..+++.+.+. ++.+..++|+.+..+....+ .. ..+|||+|. . -...+++..++
T Consensus 281 ~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~-~~~Gidip~v~ 350 (414)
T 3eiq_A 281 TQAVIFINTRRKVDWLTEKMHAR----DFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTD-----L-LARGIDVQQVS 350 (414)
T ss_dssp SSCEEECSCHHHHHHHHHHHHTT----TCCCEEC---CHHHHHHHHHHHHSCC---CEEECS-----S-CC--CCGGGCS
T ss_pred CcEEEEeCCHHHHHHHHHHHHhc----CCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECC-----c-cccCCCccCCC
Confidence 35899999999999999888773 56788888887765544333 33 368999994 2 22345777888
Q ss_pred EEEEc
Q 013173 300 YLALD 304 (448)
Q Consensus 300 ~lVlD 304 (448)
+||.-
T Consensus 351 ~Vi~~ 355 (414)
T 3eiq_A 351 LVINY 355 (414)
T ss_dssp CEEES
T ss_pred EEEEe
Confidence 87753
No 308
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=66.46 E-value=3.1 Score=43.90 Aligned_cols=75 Identities=16% Similarity=0.197 Sum_probs=49.5
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHh--cccCCcEEEEEECC--------CChHHHHHHHh---c-CccEEEeChHHHHHHH
Q 013173 223 YPLALILAPTRELSSQIHVEAKKF--SYQTGVKVVVAYGG--------APINQQLRELE---R-GVDILVATPGRLVDLL 288 (448)
Q Consensus 223 ~~~~lil~PtreL~~qi~~~~~~~--~~~~~~~~~~~~gg--------~~~~~~~~~l~---~-~~~Ilv~Tp~~l~~~l 288 (448)
..++||.++++..+..+.+.+... ....++++..++|+ .+..++...+. . ..+|||||- +
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~------~ 473 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATT------V 473 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEEC------S
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEcc------c
Confidence 346999999999999999998874 22236888888888 77665544333 3 378999994 2
Q ss_pred hcccccCCCeeEEEE
Q 013173 289 ERARVSLQMIRYLAL 303 (448)
Q Consensus 289 ~~~~~~l~~v~~lVl 303 (448)
-...+++..+.+||.
T Consensus 474 ~~~GIDip~v~~VI~ 488 (699)
T 4gl2_A 474 AEEGLDIKECNIVIR 488 (699)
T ss_dssp CCTTSCCCSCCCCEE
T ss_pred cccCCccccCCEEEE
Confidence 233467888888773
No 309
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=66.10 E-value=2.8 Score=36.67 Aligned_cols=19 Identities=26% Similarity=0.588 Sum_probs=15.2
Q ss_pred CCCCeeEEccCCCCccchh
Q 013173 181 GGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~ 199 (448)
.|+-+.+++|+|+|||+..
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4677999999999999953
No 310
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=64.53 E-value=3.9 Score=39.89 Aligned_cols=22 Identities=18% Similarity=0.202 Sum_probs=18.0
Q ss_pred CCCCeeEEccCCCCccchhhhh
Q 013173 181 GGRDLMACAQTGSGKTAAFCFP 202 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~~lp 202 (448)
.+.+++++++||+|||.....-
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~ 55 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKML 55 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHH
Confidence 5678999999999999865443
No 311
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=64.25 E-value=5.3 Score=32.87 Aligned_cols=37 Identities=14% Similarity=0.196 Sum_probs=32.0
Q ss_pred CCcEEEEeCchhhHHHHHHHHHHCCCC-eEEecCCCCH
Q 013173 404 QALTLVFVETKKGADALEHWLYMNGFP-ATTIHGDRTQ 440 (448)
Q Consensus 404 ~~~tlVF~~t~~~a~~l~~~L~~~g~~-~~~iHg~~~q 440 (448)
..++||||.+-..+...+..|...|+. +..|.|++..
T Consensus 56 ~~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~ 93 (141)
T 3ilm_A 56 SRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAA 93 (141)
T ss_dssp TSEEEEECSSHHHHHHHHHHHHHTTCCSEEECTTHHHH
T ss_pred CCeEEEEECCChHHHHHHHHHHHcCCCCEEEecCHHHH
Confidence 567999999999999999999999995 8888887643
No 312
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=62.97 E-value=35 Score=33.74 Aligned_cols=18 Identities=28% Similarity=0.388 Sum_probs=15.0
Q ss_pred CCeeEEccCCCCccchhh
Q 013173 183 RDLMACAQTGSGKTAAFC 200 (448)
Q Consensus 183 ~d~lv~a~TGsGKT~~~~ 200 (448)
+.+++++++|+|||+...
T Consensus 100 ~vI~ivG~~GvGKTTla~ 117 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAA 117 (432)
T ss_dssp CCEEEECCSSSSTTHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468899999999998643
No 313
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=62.90 E-value=3.5 Score=37.57 Aligned_cols=19 Identities=16% Similarity=0.281 Sum_probs=16.5
Q ss_pred CCCCeeEEccCCCCccchh
Q 013173 181 GGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~ 199 (448)
.+..+++.+++|+|||...
T Consensus 28 ~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp SCSCEEEECCTTSCHHHHH
T ss_pred CCCCEEEECCCCCcHHHHH
Confidence 5678999999999999854
No 314
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=62.66 E-value=4.7 Score=40.97 Aligned_cols=29 Identities=14% Similarity=0.229 Sum_probs=22.2
Q ss_pred HHHhHHhhHhCCCCeeEEccCCCCccchh
Q 013173 171 VQRHAIPISIGGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 171 ~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~ 199 (448)
+-..++-.+..+.++++.+|+|+|||...
T Consensus 30 ~i~~l~~al~~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 30 AIRLCLLAALSGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHHHHHHTCEEEEECCSSSSHHHHH
T ss_pred HHHHHHHHHhcCCeeEeecCchHHHHHHH
Confidence 33444455667899999999999999854
No 315
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=62.64 E-value=5.4 Score=38.34 Aligned_cols=19 Identities=37% Similarity=0.527 Sum_probs=16.4
Q ss_pred CCCCeeEEccCCCCccchh
Q 013173 181 GGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~ 199 (448)
....+++.+|+|+|||...
T Consensus 50 ~~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4578999999999999964
No 316
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=62.61 E-value=2.6 Score=41.03 Aligned_cols=27 Identities=19% Similarity=0.241 Sum_probs=19.6
Q ss_pred hCCCCeeEEccCCCCccchhhhhHHHHHh
Q 013173 180 IGGRDLMACAQTGSGKTAAFCFPIISGIM 208 (448)
Q Consensus 180 ~~g~d~lv~a~TGsGKT~~~~lpil~~l~ 208 (448)
..|..+++++|||||||+. +-+|..++
T Consensus 134 ~~g~~i~ivG~~GsGKTTl--l~~l~~~~ 160 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTT--IASMIDYI 160 (372)
T ss_dssp SSSEEEEEECSSSSSHHHH--HHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHH--HHHHHhhc
Confidence 3567799999999999994 33444443
No 317
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=62.60 E-value=12 Score=36.30 Aligned_cols=41 Identities=5% Similarity=-0.095 Sum_probs=36.9
Q ss_pred CCcEEEEeCchhhHHHHHHHHHH---CCCCeEEecCCCCHHHHH
Q 013173 404 QALTLVFVETKKGADALEHWLYM---NGFPATTIHGDRTQQRTS 444 (448)
Q Consensus 404 ~~~tlVF~~t~~~a~~l~~~L~~---~g~~~~~iHg~~~q~eR~ 444 (448)
+.++||.|+|+.-|.++++.+.. .++++..+||+.+..+|.
T Consensus 64 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~ 107 (414)
T 3oiy_A 64 GKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKE 107 (414)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHH
Confidence 67899999999999999999988 688999999999986653
No 318
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=62.18 E-value=10 Score=36.19 Aligned_cols=90 Identities=10% Similarity=0.055 Sum_probs=48.9
Q ss_pred CeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCCh
Q 013173 184 DLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPI 263 (448)
Q Consensus 184 d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~ 263 (448)
-+++.++.|+|||...+-.+. ...+.. .+.+++++..--.+. +. .++++....
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~-~~~~~g----------~g~~vlyId~E~s~~-~~--ra~~lGvd~------------- 82 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVS-SYMRQY----------PDAVCLFYDSEFGIT-PA--YLRSMGVDP------------- 82 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHH-HHHHHC----------TTCEEEEEESSCCCC-HH--HHHHTTCCG-------------
T ss_pred eEEEECCCCCCHHHHHHHHHH-HHHhcC----------CCceEEEEeccchhh-HH--HHHHhCCCH-------------
Confidence 488999999999986544333 332210 123477776544332 22 355543211
Q ss_pred HHHHHHHhcCccEEEeChHHHHHH-H---hcc-cccCCCeeEEEEcCCcccc
Q 013173 264 NQQLRELERGVDILVATPGRLVDL-L---ERA-RVSLQMIRYLALDEADRML 310 (448)
Q Consensus 264 ~~~~~~l~~~~~Ilv~Tp~~l~~~-l---~~~-~~~l~~v~~lVlDEah~ll 310 (448)
-+++++.|..+.+. + +.. .+.-..+++||||=+..|.
T Consensus 83 ----------d~llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 83 ----------ERVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp ----------GGEEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCB
T ss_pred ----------HHeEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccccc
Confidence 13455544443333 2 111 1223468999999999886
No 319
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=61.05 E-value=2.7 Score=36.62 Aligned_cols=19 Identities=21% Similarity=0.174 Sum_probs=16.7
Q ss_pred CCCCeeEEccCCCCccchh
Q 013173 181 GGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~ 199 (448)
.++.+++++++|||||+..
T Consensus 24 ~~~~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLG 42 (199)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHH
Confidence 5678999999999999964
No 320
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=60.81 E-value=14 Score=32.21 Aligned_cols=42 Identities=14% Similarity=0.073 Sum_probs=35.0
Q ss_pred CCcEEEEeCchhhHHHHHHHHHHC-----CCCeEEecCCCCHHHHHH
Q 013173 404 QALTLVFVETKKGADALEHWLYMN-----GFPATTIHGDRTQQRTSI 445 (448)
Q Consensus 404 ~~~tlVF~~t~~~a~~l~~~L~~~-----g~~~~~iHg~~~q~eR~~ 445 (448)
..++||.|+++.-+.++++.+... ++.+..+||+.+..++.+
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~ 128 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE 128 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHH
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHH
Confidence 447999999999999999888764 789999999988766543
No 321
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=60.62 E-value=2.7 Score=35.75 Aligned_cols=21 Identities=19% Similarity=0.142 Sum_probs=17.4
Q ss_pred hCCCCeeEEccCCCCccchhh
Q 013173 180 IGGRDLMACAQTGSGKTAAFC 200 (448)
Q Consensus 180 ~~g~d~lv~a~TGsGKT~~~~ 200 (448)
..++.++++++.|||||+...
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHH
Confidence 356789999999999999543
No 322
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=60.38 E-value=30 Score=36.42 Aligned_cols=74 Identities=16% Similarity=0.151 Sum_probs=51.8
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhccc--------------------------------CCcEEEEEECCCChHHHHHHHh
Q 013173 224 PLALILAPTRELSSQIHVEAKKFSYQ--------------------------------TGVKVVVAYGGAPINQQLRELE 271 (448)
Q Consensus 224 ~~~lil~PtreL~~qi~~~~~~~~~~--------------------------------~~~~~~~~~gg~~~~~~~~~l~ 271 (448)
..+||.+|++.-+..++..+.+.... ....+..++++.+..++.....
T Consensus 253 ~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~ 332 (715)
T 2va8_A 253 GQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEE 332 (715)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHH
Confidence 35999999999999999888764321 0124778899988766544332
Q ss_pred ---c-CccEEEeChHHHHHHHhcccccCCCeeEEEE
Q 013173 272 ---R-GVDILVATPGRLVDLLERARVSLQMIRYLAL 303 (448)
Q Consensus 272 ---~-~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVl 303 (448)
. ...|||||. . -...+++..+.+||-
T Consensus 333 ~f~~g~~~vlvaT~-----~-l~~Gidip~~~~VI~ 362 (715)
T 2va8_A 333 GFRQRKIKVIVATP-----T-LAAGVNLPARTVIIG 362 (715)
T ss_dssp HHHTTCSCEEEECG-----G-GGGSSCCCBSEEEEC
T ss_pred HHHcCCCeEEEECh-----H-HhcccCCCceEEEEe
Confidence 2 479999994 2 234567888887664
No 323
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=60.33 E-value=5.7 Score=37.99 Aligned_cols=19 Identities=42% Similarity=0.656 Sum_probs=16.1
Q ss_pred CCCeeEEccCCCCccchhh
Q 013173 182 GRDLMACAQTGSGKTAAFC 200 (448)
Q Consensus 182 g~d~lv~a~TGsGKT~~~~ 200 (448)
++.+++.+|+|+|||....
T Consensus 70 ~~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp TCEEEEEESTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4679999999999998643
No 324
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=60.29 E-value=6.8 Score=45.71 Aligned_cols=123 Identities=18% Similarity=0.250 Sum_probs=68.2
Q ss_pred CCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCC
Q 013173 182 GRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGA 261 (448)
Q Consensus 182 g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~ 261 (448)
|+-+.+.+|.|||||+.. ++++....+. +..|+++.+--+|.... +++++-..
T Consensus 1431 g~~iei~g~~~sGkttl~-~~~~a~~~~~------------g~~~~~i~~e~~~~~~~---~~~~Gv~~----------- 1483 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLT-LQVIAAAQRE------------GKTCAFIDAEHALDPIY---ARKLGVDI----------- 1483 (1706)
T ss_dssp TSEEEEECSTTSSHHHHH-HHHHHHHHHT------------TCCEEEECTTSCCCHHH---HHHTTCCG-----------
T ss_pred CCEEEEEcCCCCCHHHHH-HHHHHHHHhc------------CCeEEEEecCCCCCHHH---HHHcCCCH-----------
Confidence 467999999999999974 4444443332 23478887765554432 55543211
Q ss_pred ChHHHHHHHhcCccEEEeChHHHHHHHhc--ccccCCCeeEEEEcCCcccccCC-----------------CHHHHHHHH
Q 013173 262 PINQQLRELERGVDILVATPGRLVDLLER--ARVSLQMIRYLALDEADRMLDMG-----------------FEPQIRKIV 322 (448)
Q Consensus 262 ~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~--~~~~l~~v~~lVlDEah~ll~~g-----------------f~~~i~~i~ 322 (448)
-+++|.-|+.-.+.|.. ..+.-..+++||||.+..|.... +...++++.
T Consensus 1484 ------------~~l~~~~p~~~e~~l~~~~~~~~s~~~~~vvvDsv~al~~~~e~~~~~~~~~~~~~ar~m~~~lr~l~ 1551 (1706)
T 3cmw_A 1484 ------------DNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLA 1551 (1706)
T ss_dssp ------------GGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCCCTTTTC-------CCHHHHHHHHHHHHHH
T ss_pred ------------HHeEEeCCCcHHHHHHHHHHHHHcCCCCEEEEccHHhCCccccccccccccchhHHHHHHHHHHHHHH
Confidence 13666666554333321 11122447789999999886432 122355555
Q ss_pred HHcCCCCCCCcEEEEEeccCchHHH
Q 013173 323 QQMDMPPPGMRQTMLFSATFPKEIQ 347 (448)
Q Consensus 323 ~~l~~~~~~~~q~i~~SAT~~~~v~ 347 (448)
..+ ....-+++|...+...+-
T Consensus 1552 ~~~----~~~~~~~i~~~~~~~~~~ 1572 (1706)
T 3cmw_A 1552 GNL----KQSNTLLIFINQIRMKIG 1572 (1706)
T ss_dssp HHH----HHHTCEEEEEECBC----
T ss_pred HHH----HhCCcEEEEeeccccccc
Confidence 555 222347777777665553
No 325
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=60.28 E-value=1.8 Score=43.39 Aligned_cols=70 Identities=20% Similarity=0.273 Sum_probs=0.0
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHH---hc-CccEEEeChHHHHHHHhcccccCCCe
Q 013173 223 YPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLREL---ER-GVDILVATPGRLVDLLERARVSLQMI 298 (448)
Q Consensus 223 ~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~~-~~~Ilv~Tp~~l~~~l~~~~~~l~~v 298 (448)
..++||.|+++.-|..+++.+... ++.+..++|+.+..+....+ .. ..+|||||. .+. ..+++.++
T Consensus 333 ~~~~lvF~~s~~~~~~l~~~L~~~----~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~-----~~~-~GlDip~v 402 (479)
T 3fmp_B 333 IAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VCA-RGIDVEQV 402 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceEEEeCcHHHHHHHHHHHHhC----CccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcc-----ccc-cCCccccC
Confidence 356999999999999988888774 56778888887655443322 22 378999993 222 34578888
Q ss_pred eEEE
Q 013173 299 RYLA 302 (448)
Q Consensus 299 ~~lV 302 (448)
.+||
T Consensus 403 ~~VI 406 (479)
T 3fmp_B 403 SVVI 406 (479)
T ss_dssp ----
T ss_pred CEEE
Confidence 8876
No 326
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=59.76 E-value=2.9 Score=36.79 Aligned_cols=19 Identities=21% Similarity=0.288 Sum_probs=16.1
Q ss_pred CCCCeeEEccCCCCccchh
Q 013173 181 GGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~ 199 (448)
.|+-+++++|+|+|||+..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 4667899999999999954
No 327
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=59.65 E-value=1e+02 Score=27.82 Aligned_cols=26 Identities=12% Similarity=0.175 Sum_probs=23.4
Q ss_pred CCcEEEEeCchhhHHHHHHHHHHCCC
Q 013173 404 QALTLVFVETKKGADALEHWLYMNGF 429 (448)
Q Consensus 404 ~~~tlVF~~t~~~a~~l~~~L~~~g~ 429 (448)
..++.|||.+-..|..+.+.|...|+
T Consensus 186 ~~~~ai~~~~d~~a~g~~~al~~~g~ 211 (305)
T 3g1w_A 186 PNLAGIFATEANGGVGVGDAVRLESR 211 (305)
T ss_dssp TTEEEEEESSHHHHHHHHHHHHHTTC
T ss_pred CCceEEEECCCcchhhHHHHHHhcCC
Confidence 45789999999999999999999987
No 328
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=59.57 E-value=4.3 Score=36.05 Aligned_cols=20 Identities=25% Similarity=0.391 Sum_probs=16.6
Q ss_pred hCCCCeeEEccCCCCccchh
Q 013173 180 IGGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 180 ~~g~d~lv~a~TGsGKT~~~ 199 (448)
..|+-+.+++|+|+|||+..
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLI 40 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 46788999999999999843
No 329
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=59.55 E-value=93 Score=27.41 Aligned_cols=26 Identities=8% Similarity=0.061 Sum_probs=22.9
Q ss_pred CCcEEEEeCchhhHHHHHHHHHHCCC
Q 013173 404 QALTLVFVETKKGADALEHWLYMNGF 429 (448)
Q Consensus 404 ~~~tlVF~~t~~~a~~l~~~L~~~g~ 429 (448)
..++.|||.+-..|..+.+.|...|+
T Consensus 186 ~~~~ai~~~~d~~a~g~~~al~~~g~ 211 (276)
T 3ksm_A 186 PTIDGLFTPNESTTIGALVAIRQSGM 211 (276)
T ss_dssp SCCCEEECCSHHHHHHHHHHHHHTTC
T ss_pred CCceEEEECCchhhhHHHHHHHHcCC
Confidence 45689999999999999999999986
No 330
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=59.45 E-value=12 Score=37.64 Aligned_cols=25 Identities=16% Similarity=0.223 Sum_probs=18.7
Q ss_pred CCCCeeEEccCCCCccchhhhhHHH
Q 013173 181 GGRDLMACAQTGSGKTAAFCFPIIS 205 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~~lpil~ 205 (448)
.|.-+++.+++|+|||...+-.+.+
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~ 265 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQ 265 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHH
Confidence 4566899999999999865544443
No 331
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=58.93 E-value=2.9 Score=36.57 Aligned_cols=21 Identities=24% Similarity=0.389 Sum_probs=17.5
Q ss_pred HhCCCCeeEEccCCCCccchh
Q 013173 179 SIGGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 179 i~~g~d~lv~a~TGsGKT~~~ 199 (448)
+..++-+++++++|||||+..
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHH
Confidence 346788999999999999854
No 332
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=58.85 E-value=2.9 Score=39.71 Aligned_cols=16 Identities=38% Similarity=0.391 Sum_probs=13.7
Q ss_pred CeeEEccCCCCccchh
Q 013173 184 DLMACAQTGSGKTAAF 199 (448)
Q Consensus 184 d~lv~a~TGsGKT~~~ 199 (448)
-+++++|||||||...
T Consensus 12 ~i~i~GptgsGKt~la 27 (316)
T 3foz_A 12 AIFLMGPTASGKTALA 27 (316)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 3789999999999864
No 333
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=58.45 E-value=3 Score=39.73 Aligned_cols=17 Identities=24% Similarity=0.218 Sum_probs=14.1
Q ss_pred CCeeEEccCCCCccchh
Q 013173 183 RDLMACAQTGSGKTAAF 199 (448)
Q Consensus 183 ~d~lv~a~TGsGKT~~~ 199 (448)
+-+++++|||||||...
T Consensus 4 ~~i~i~GptgsGKt~la 20 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTS 20 (322)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCcCCHHHHH
Confidence 34789999999999864
No 334
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=58.38 E-value=17 Score=32.11 Aligned_cols=43 Identities=12% Similarity=0.157 Sum_probs=36.1
Q ss_pred CCcEEEEeCchhhHHHHHHHHHHC-----CCCeEEecCCCCHHHHHHh
Q 013173 404 QALTLVFVETKKGADALEHWLYMN-----GFPATTIHGDRTQQRTSIE 446 (448)
Q Consensus 404 ~~~tlVF~~t~~~a~~l~~~L~~~-----g~~~~~iHg~~~q~eR~~~ 446 (448)
..++||.|+|+.-|.++++.+... ++.+..++|+....++.+.
T Consensus 92 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 139 (230)
T 2oxc_A 92 STQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTR 139 (230)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHh
Confidence 568999999999999999988763 6889999999987766543
No 335
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=58.34 E-value=87 Score=26.72 Aligned_cols=67 Identities=9% Similarity=-0.144 Sum_probs=18.8
Q ss_pred hCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013173 180 IGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKF 246 (448)
Q Consensus 180 ~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~ 246 (448)
+.|-.+-+.+..|-|=|+.+.+|+-..-.................++||+-........+...+..+
T Consensus 18 ~hgG~i~v~S~~g~Gs~f~~~lP~~~~~~~~~~~~~~~~~~~~~~~ILiVdDd~~~~~~l~~~L~~~ 84 (206)
T 3mm4_A 18 SHMASTDSESETRVKSVRTGRKPIGNPEDEQETSKPSDDEFLRGKRVLVVDDNFISRKVATGKLKKM 84 (206)
T ss_dssp -------------------------------------CTTTTTTCEEEEECSCHHHHHHHHHHHHHT
T ss_pred ccCCceeeeccCCCcceeeeccCCCCCcccccccCCCcccccCCCEEEEEeCCHHHHHHHHHHHHHc
Confidence 4455677888899999999999974322111111111112234457888888777777766666664
No 336
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=58.05 E-value=3.1 Score=40.02 Aligned_cols=19 Identities=26% Similarity=0.316 Sum_probs=15.5
Q ss_pred CCCeeEEccCCCCccchhh
Q 013173 182 GRDLMACAQTGSGKTAAFC 200 (448)
Q Consensus 182 g~d~lv~a~TGsGKT~~~~ 200 (448)
++-+++++|||||||....
T Consensus 40 ~~lIvI~GPTgsGKTtLa~ 58 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSI 58 (339)
T ss_dssp CEEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3468999999999998643
No 337
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=57.33 E-value=3.5 Score=35.93 Aligned_cols=16 Identities=25% Similarity=0.590 Sum_probs=14.2
Q ss_pred CCeeEEccCCCCccch
Q 013173 183 RDLMACAQTGSGKTAA 198 (448)
Q Consensus 183 ~d~lv~a~TGsGKT~~ 198 (448)
|-+++++|+|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5689999999999984
No 338
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=57.26 E-value=10 Score=34.89 Aligned_cols=19 Identities=26% Similarity=0.415 Sum_probs=16.2
Q ss_pred CCCCeeEEccCCCCccchh
Q 013173 181 GGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~ 199 (448)
....+++.+|+|+|||...
T Consensus 49 ~~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3578999999999999854
No 339
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=57.24 E-value=4.1 Score=39.51 Aligned_cols=19 Identities=47% Similarity=0.539 Sum_probs=16.1
Q ss_pred CCCC--eeEEccCCCCccchh
Q 013173 181 GGRD--LMACAQTGSGKTAAF 199 (448)
Q Consensus 181 ~g~d--~lv~a~TGsGKT~~~ 199 (448)
.|.+ +++.++||||||...
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEE
Confidence 4777 699999999999864
No 340
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=57.15 E-value=3.4 Score=35.27 Aligned_cols=19 Identities=21% Similarity=0.218 Sum_probs=16.0
Q ss_pred CCCeeEEccCCCCccchhh
Q 013173 182 GRDLMACAQTGSGKTAAFC 200 (448)
Q Consensus 182 g~d~lv~a~TGsGKT~~~~ 200 (448)
.+.+++++++|||||+...
T Consensus 5 ~~~i~l~G~~GsGKst~a~ 23 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGS 23 (185)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4678999999999998643
No 341
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=56.95 E-value=3.2 Score=37.92 Aligned_cols=16 Identities=31% Similarity=0.160 Sum_probs=13.6
Q ss_pred CeeEEccCCCCccchh
Q 013173 184 DLMACAQTGSGKTAAF 199 (448)
Q Consensus 184 d~lv~a~TGsGKT~~~ 199 (448)
-++++++||||||+..
T Consensus 3 li~I~G~~GSGKSTla 18 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 3689999999999864
No 342
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=56.72 E-value=3.5 Score=36.32 Aligned_cols=19 Identities=21% Similarity=0.438 Sum_probs=16.5
Q ss_pred CCCCeeEEccCCCCccchh
Q 013173 181 GGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~ 199 (448)
.|+-+++++|+|+|||...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIK 36 (197)
T ss_dssp SCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECcCCCCHHHHH
Confidence 6778999999999999943
No 343
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=56.70 E-value=3.4 Score=35.80 Aligned_cols=20 Identities=20% Similarity=0.227 Sum_probs=16.7
Q ss_pred hCCCCeeEEccCCCCccchh
Q 013173 180 IGGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 180 ~~g~d~lv~a~TGsGKT~~~ 199 (448)
..|.-+.+++++|||||+..
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35777899999999999854
No 344
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=56.28 E-value=3.9 Score=35.14 Aligned_cols=17 Identities=24% Similarity=0.595 Sum_probs=14.1
Q ss_pred CCeeEEccCCCCccchh
Q 013173 183 RDLMACAQTGSGKTAAF 199 (448)
Q Consensus 183 ~d~lv~a~TGsGKT~~~ 199 (448)
+-+.+.+|+|+|||+..
T Consensus 2 ~ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEESSSSSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45789999999999953
No 345
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=55.90 E-value=19 Score=32.01 Aligned_cols=42 Identities=17% Similarity=0.141 Sum_probs=35.0
Q ss_pred CCcEEEEeCchhhHHHHHHHHHH----CCCCeEEecCCCCHHHHHH
Q 013173 404 QALTLVFVETKKGADALEHWLYM----NGFPATTIHGDRTQQRTSI 445 (448)
Q Consensus 404 ~~~tlVF~~t~~~a~~l~~~L~~----~g~~~~~iHg~~~q~eR~~ 445 (448)
+.++||.|+|+.-|.++++.+.. .++.+..++|+.+..+...
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 147 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIR 147 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHH
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHH
Confidence 66799999999999988877754 4899999999998876654
No 346
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=55.80 E-value=2.6 Score=36.21 Aligned_cols=20 Identities=35% Similarity=0.627 Sum_probs=16.6
Q ss_pred hCCCCeeEEccCCCCccchh
Q 013173 180 IGGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 180 ~~g~d~lv~a~TGsGKT~~~ 199 (448)
..|.-++++++.|||||+..
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIA 26 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 35677899999999999953
No 347
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=55.69 E-value=3.5 Score=34.36 Aligned_cols=16 Identities=25% Similarity=0.345 Sum_probs=13.7
Q ss_pred CeeEEccCCCCccchh
Q 013173 184 DLMACAQTGSGKTAAF 199 (448)
Q Consensus 184 d~lv~a~TGsGKT~~~ 199 (448)
-+++++++|||||+..
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999954
No 348
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=55.38 E-value=3.3 Score=37.52 Aligned_cols=51 Identities=16% Similarity=0.149 Sum_probs=28.3
Q ss_pred CCCcccCCCCHHHHHHHHHCC--CCCCCHHHHhHHhhHh--CCCCeeEEccCCCCccchh
Q 013173 144 VNTFAEIDLGEALNLNIRRCK--YVKPTPVQRHAIPISI--GGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 144 ~~~f~~l~L~~~l~~~l~~~~--~~~pt~~Q~~~i~~i~--~g~d~lv~a~TGsGKT~~~ 199 (448)
..+|+++.-.+.....++..- |..+ ..+..+- -.+.+++.+|+|+|||...
T Consensus 12 ~~~~~~i~g~~~~~~~l~~l~~~~~~~-----~~~~~~~~~~~~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 12 KVTFKDVAGAEEAKEELKEIVEFLKNP-----SRFHEMGARIPKGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp SCCGGGCCSCHHHHHHHHHHHHHHHCH-----HHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHHCH-----HHHHHcCCCCCCeEEEECCCCCCHHHHH
Confidence 356777766565555554321 1111 1121110 1234999999999999853
No 349
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=55.18 E-value=3.9 Score=35.42 Aligned_cols=19 Identities=26% Similarity=0.408 Sum_probs=16.0
Q ss_pred CCCCeeEEccCCCCccchh
Q 013173 181 GGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~ 199 (448)
.|.-+.+.+|+|||||+..
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 5677889999999999953
No 350
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=54.99 E-value=3.9 Score=34.58 Aligned_cols=18 Identities=17% Similarity=0.307 Sum_probs=15.3
Q ss_pred CCCeeEEccCCCCccchh
Q 013173 182 GRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 182 g~d~lv~a~TGsGKT~~~ 199 (448)
++-++++++.|||||++.
T Consensus 3 ~~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 456899999999999964
No 351
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=54.87 E-value=37 Score=33.30 Aligned_cols=33 Identities=15% Similarity=0.225 Sum_probs=24.3
Q ss_pred CCHHHHhHHhhHh---CCCCeeEEccCCCCccchhh
Q 013173 168 PTPVQRHAIPISI---GGRDLMACAQTGSGKTAAFC 200 (448)
Q Consensus 168 pt~~Q~~~i~~i~---~g~d~lv~a~TGsGKT~~~~ 200 (448)
|-..=..+|..++ .|+-+.+.+++|+|||....
T Consensus 157 ~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~ 192 (422)
T 3ice_A 157 TEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQ 192 (422)
T ss_dssp TTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHH
T ss_pred cccccceeeeeeeeecCCcEEEEecCCCCChhHHHH
Confidence 4444456666554 68999999999999999543
No 352
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=54.84 E-value=73 Score=31.33 Aligned_cols=19 Identities=26% Similarity=0.254 Sum_probs=14.7
Q ss_pred CCCeeEEccCCCCccchhh
Q 013173 182 GRDLMACAQTGSGKTAAFC 200 (448)
Q Consensus 182 g~d~lv~a~TGsGKT~~~~ 200 (448)
++-+++++++|+|||+...
T Consensus 98 ~~vi~i~G~~GsGKTT~~~ 116 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAA 116 (425)
T ss_dssp SEEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4457788999999998543
No 353
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=54.81 E-value=23 Score=32.41 Aligned_cols=37 Identities=14% Similarity=0.056 Sum_probs=33.2
Q ss_pred CCcEEEEeCchhhHHHHHHHHHHCCCC-eEEecCCCCH
Q 013173 404 QALTLVFVETKKGADALEHWLYMNGFP-ATTIHGDRTQ 440 (448)
Q Consensus 404 ~~~tlVF~~t~~~a~~l~~~L~~~g~~-~~~iHg~~~q 440 (448)
..++||||.+=..+...+..|...|++ +..|.|++..
T Consensus 230 ~~~ivv~C~~G~rs~~a~~~L~~~G~~~v~~~~GG~~~ 267 (280)
T 1urh_A 230 DKPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWSE 267 (280)
T ss_dssp SSCEEEECCSSSTHHHHHHHHHHTTCSSCEEECCSCCC
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCCCceeeCChHHH
Confidence 678999999999999999999999994 9999999864
No 354
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=54.53 E-value=3.4 Score=39.09 Aligned_cols=22 Identities=18% Similarity=0.134 Sum_probs=18.4
Q ss_pred hHhCCCCeeEEccCCCCccchh
Q 013173 178 ISIGGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 178 ~i~~g~d~lv~a~TGsGKT~~~ 199 (448)
.+..+.++++.+++|+|||...
T Consensus 42 ~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 42 GICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHTCCEEEESCCCHHHHHHH
T ss_pred HHHcCCeEEEECCCCCcHHHHH
Confidence 4456889999999999999853
No 355
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=53.98 E-value=5.7 Score=37.32 Aligned_cols=19 Identities=16% Similarity=0.347 Sum_probs=16.4
Q ss_pred CCCCeeEEccCCCCccchh
Q 013173 181 GGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~ 199 (448)
....+++.+++|+|||...
T Consensus 24 ~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp TTSCEEEESCTTSCHHHHH
T ss_pred CCCcEEEECCCCchHHHHH
Confidence 4678999999999999854
No 356
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=53.94 E-value=3.9 Score=36.19 Aligned_cols=19 Identities=21% Similarity=0.386 Sum_probs=15.7
Q ss_pred CCCCeeEEccCCCCccchh
Q 013173 181 GGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~ 199 (448)
.++-+++.++||+|||...
T Consensus 33 ~g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETA 51 (205)
T ss_dssp TTEEEEEECCCTTTTHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 4667999999999998743
No 357
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=53.80 E-value=4.6 Score=33.92 Aligned_cols=18 Identities=22% Similarity=0.414 Sum_probs=15.4
Q ss_pred CCCeeEEccCCCCccchh
Q 013173 182 GRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 182 g~d~lv~a~TGsGKT~~~ 199 (448)
+..++++++.|||||+..
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 567899999999999953
No 358
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=53.34 E-value=58 Score=32.89 Aligned_cols=17 Identities=35% Similarity=0.440 Sum_probs=14.2
Q ss_pred CeeEEccCCCCccchhh
Q 013173 184 DLMACAQTGSGKTAAFC 200 (448)
Q Consensus 184 d~lv~a~TGsGKT~~~~ 200 (448)
.+++++++|+|||+...
T Consensus 103 vI~ivG~~GvGKTTl~~ 119 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCS 119 (504)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57889999999998643
No 359
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=52.91 E-value=4.5 Score=35.44 Aligned_cols=22 Identities=18% Similarity=0.282 Sum_probs=16.8
Q ss_pred hHhCCCCeeEEccCCCCccchh
Q 013173 178 ISIGGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 178 ~i~~g~d~lv~a~TGsGKT~~~ 199 (448)
.+..|+-+.+.+|+|||||+.+
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHH
Confidence 4557888999999999999953
No 360
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=52.78 E-value=6 Score=34.63 Aligned_cols=27 Identities=19% Similarity=0.284 Sum_probs=18.7
Q ss_pred CCCCeeEEccCCCCccchhhhhHHHHHhh
Q 013173 181 GGRDLMACAQTGSGKTAAFCFPIISGIMR 209 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~~lpil~~l~~ 209 (448)
.|.-+.+.+++|||||+. +-+|..++.
T Consensus 21 ~g~~v~I~G~sGsGKSTl--~~~l~~~~~ 47 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTL--SNPLAAALS 47 (208)
T ss_dssp SCEEEEEECCTTSCTHHH--HHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHH--HHHHHHHHh
Confidence 355678999999999984 334444443
No 361
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=52.76 E-value=5.7 Score=42.25 Aligned_cols=25 Identities=44% Similarity=0.630 Sum_probs=20.2
Q ss_pred HHhhHhCCCC--eeEEccCCCCccchh
Q 013173 175 AIPISIGGRD--LMACAQTGSGKTAAF 199 (448)
Q Consensus 175 ~i~~i~~g~d--~lv~a~TGsGKT~~~ 199 (448)
.|..++.|.| +++.++||||||...
T Consensus 454 ~v~~~~~G~n~~i~ayGqtgsGKT~Tm 480 (715)
T 4h1g_A 454 LIQCSLDGTNVCVFAYGQTGSGKTFTM 480 (715)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCceEEEEccCCCCCchhhcc
Confidence 4566778888 788899999999753
No 362
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=52.48 E-value=45 Score=29.79 Aligned_cols=42 Identities=19% Similarity=0.211 Sum_probs=34.7
Q ss_pred CCcEEEEeCchhhHHHHHHHHHHC----CCCeEEecCCCCHHHHHH
Q 013173 404 QALTLVFVETKKGADALEHWLYMN----GFPATTIHGDRTQQRTSI 445 (448)
Q Consensus 404 ~~~tlVF~~t~~~a~~l~~~L~~~----g~~~~~iHg~~~q~eR~~ 445 (448)
..++||.|+|+.-|.++++.+... ++.+..++|+....+...
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 156 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSL 156 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHH
Confidence 457999999999999999887654 789999999988765543
No 363
>3tg1_B Dual specificity protein phosphatase 10; kinase/rhodanese-like domain, docking interaction, transfera hydrolase complex; 2.71A {Homo sapiens}
Probab=52.38 E-value=10 Score=31.68 Aligned_cols=37 Identities=14% Similarity=0.145 Sum_probs=31.4
Q ss_pred CCcEEEEeCch---------hhHHHHHHHHHHCCCCeEEecCCCCH
Q 013173 404 QALTLVFVETK---------KGADALEHWLYMNGFPATTIHGDRTQ 440 (448)
Q Consensus 404 ~~~tlVF~~t~---------~~a~~l~~~L~~~g~~~~~iHg~~~q 440 (448)
..++||||.+- ..+..++..|...|+++..+.|++..
T Consensus 93 ~~~IVvyc~~g~~~~~~~~~~~s~~a~~~L~~~G~~v~~L~GG~~~ 138 (158)
T 3tg1_B 93 SKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGKEPLVLKGGLSS 138 (158)
T ss_dssp TSCEEEECSCCSCTTSCCSSSHHHHHHHHHHTTTCCEEEETTHHHH
T ss_pred CCeEEEEECCCCcccccCcchHHHHHHHHHHhCCCcEEEeCCcHHH
Confidence 56799999987 35888999999999999999998643
No 364
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=52.30 E-value=3.9 Score=34.75 Aligned_cols=20 Identities=20% Similarity=0.122 Sum_probs=16.5
Q ss_pred CCCCeeEEccCCCCccchhh
Q 013173 181 GGRDLMACAQTGSGKTAAFC 200 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~~ 200 (448)
.|.-+.+++++|||||+.+-
T Consensus 8 ~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 45668899999999999654
No 365
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=52.29 E-value=2.1 Score=39.82 Aligned_cols=53 Identities=19% Similarity=0.223 Sum_probs=25.5
Q ss_pred CCCcccCCCCHHHHHHHHHCCCCCCCHHH-HhHHhhH--hCCCCeeEEccCCCCccchh
Q 013173 144 VNTFAEIDLGEALNLNIRRCKYVKPTPVQ-RHAIPIS--IGGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 144 ~~~f~~l~L~~~l~~~l~~~~~~~pt~~Q-~~~i~~i--~~g~d~lv~a~TGsGKT~~~ 199 (448)
-.+|++++-.+.+++.+.+.- -.|+. ..++..+ .-.+.+++.+|.|+|||+..
T Consensus 6 ~~~~~di~g~~~~~~~l~~~i---~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMAI---LAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp ------CCHHHHHHHHHHHHH---THHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHH---HHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 346888876666666665421 01111 1112111 11234999999999999853
No 366
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=51.94 E-value=4.7 Score=36.01 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=16.7
Q ss_pred HhCCCCeeEEccCCCCccchh
Q 013173 179 SIGGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 179 i~~g~d~lv~a~TGsGKT~~~ 199 (448)
+..|+-+++++|+|+|||+.+
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLI 33 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHH
Confidence 446788999999999999953
No 367
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=51.92 E-value=1.3e+02 Score=26.77 Aligned_cols=27 Identities=19% Similarity=0.078 Sum_probs=23.2
Q ss_pred CCcEEEEeCchhhHHHHHHHHHHCCCC
Q 013173 404 QALTLVFVETKKGADALEHWLYMNGFP 430 (448)
Q Consensus 404 ~~~tlVF~~t~~~a~~l~~~L~~~g~~ 430 (448)
..++-|||.+-..|..+.+.|...|+.
T Consensus 191 ~~~~ai~~~~d~~a~g~~~al~~~g~~ 217 (292)
T 3k4h_A 191 QPPTAIMATDDLIGLGVLSALSKKGFV 217 (292)
T ss_dssp SCCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred CCCcEEEEcChHHHHHHHHHHHHhCCC
Confidence 456789999999999999999998864
No 368
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=51.75 E-value=6 Score=33.57 Aligned_cols=16 Identities=25% Similarity=0.154 Sum_probs=13.6
Q ss_pred CeeEEccCCCCccchh
Q 013173 184 DLMACAQTGSGKTAAF 199 (448)
Q Consensus 184 d~lv~a~TGsGKT~~~ 199 (448)
-.++++++|||||..+
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 4689999999999853
No 369
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=51.57 E-value=6.9 Score=47.88 Aligned_cols=49 Identities=16% Similarity=0.191 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHhH-H---hhHhCCCCeeEEccCCCCccchhhh
Q 013173 152 LGEALNLNIRRCKYVKPTPVQRHA-I---PISIGGRDLMACAQTGSGKTAAFCF 201 (448)
Q Consensus 152 L~~~l~~~l~~~~~~~pt~~Q~~~-i---~~i~~g~d~lv~a~TGsGKT~~~~l 201 (448)
+...+.+.+.+.++ .+++.+..- + ..+...+.+|+++|||||||.++-.
T Consensus 890 l~~~i~~~~~~~~l-~~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~ 942 (2695)
T 4akg_A 890 IVQCLKDAGQRSGF-SMSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKT 942 (2695)
T ss_dssp HHHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHH
T ss_pred HHHHHHHHHHHcCC-cccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHH
Confidence 45566777777776 466655332 2 2334567799999999999997653
No 370
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=51.55 E-value=9.7 Score=37.96 Aligned_cols=28 Identities=11% Similarity=0.045 Sum_probs=20.1
Q ss_pred eEEEEcCCcccccCCCHHHHHHHHHHcCCCCC
Q 013173 299 RYLALDEADRMLDMGFEPQIRKIVQQMDMPPP 330 (448)
Q Consensus 299 ~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~ 330 (448)
++++|||||+|.. .....+++.+..++.
T Consensus 297 ~VliIDEa~~l~~----~a~~aLlk~lEe~~~ 324 (456)
T 2c9o_A 297 GVLFVDEVHMLDI----ECFTYLHRALESSIA 324 (456)
T ss_dssp CEEEEESGGGCBH----HHHHHHHHHTTSTTC
T ss_pred eEEEEechhhcCH----HHHHHHHHHhhccCC
Confidence 5899999998854 556666777766543
No 371
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=51.40 E-value=7 Score=39.77 Aligned_cols=27 Identities=26% Similarity=0.301 Sum_probs=20.3
Q ss_pred CCCCeeEEccCCCCccchhhhhHHHHH
Q 013173 181 GGRDLMACAQTGSGKTAAFCFPIISGI 207 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~~lpil~~l 207 (448)
.+.+++|.+.||||||.+....++..+
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~sLl 192 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMILSML 192 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 467899999999999997554444333
No 372
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=51.27 E-value=4.9 Score=34.44 Aligned_cols=19 Identities=26% Similarity=0.504 Sum_probs=16.3
Q ss_pred CCCCeeEEccCCCCccchh
Q 013173 181 GGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~ 199 (448)
.+..++++++.|||||++.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMA 27 (184)
T ss_dssp SSCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4667999999999999964
No 373
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=51.11 E-value=5.5 Score=35.50 Aligned_cols=20 Identities=30% Similarity=0.335 Sum_probs=12.8
Q ss_pred hCCCCeeEEccCCCCccchh
Q 013173 180 IGGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 180 ~~g~d~lv~a~TGsGKT~~~ 199 (448)
..|+-+.+.+|+|||||+..
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp ECCCEEEEECSCC----CHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35777899999999999953
No 374
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=50.90 E-value=37 Score=28.93 Aligned_cols=42 Identities=14% Similarity=0.126 Sum_probs=34.4
Q ss_pred CCCcEEEEeCchhhHHHHHHHHHHC--CCCeEEecCCCCHHHHH
Q 013173 403 KQALTLVFVETKKGADALEHWLYMN--GFPATTIHGDRTQQRTS 444 (448)
Q Consensus 403 ~~~~tlVF~~t~~~a~~l~~~L~~~--g~~~~~iHg~~~q~eR~ 444 (448)
...++||.|+++.-+.++++.+... .+.+..+||+....+..
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQK 114 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHH
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHH
Confidence 3678999999999999999999775 47899999988755443
No 375
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=50.82 E-value=28 Score=34.45 Aligned_cols=18 Identities=22% Similarity=0.364 Sum_probs=14.4
Q ss_pred CCeeEEccCCCCccchhh
Q 013173 183 RDLMACAQTGSGKTAAFC 200 (448)
Q Consensus 183 ~d~lv~a~TGsGKT~~~~ 200 (448)
+.+++++++|+|||+...
T Consensus 101 ~vI~ivG~~GvGKTT~a~ 118 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVG 118 (433)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 357788999999998643
No 376
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=50.74 E-value=4.2 Score=37.46 Aligned_cols=50 Identities=16% Similarity=0.177 Sum_probs=27.6
Q ss_pred CCcccCCCCHHHHHHHHHCC--CCCCCHHHHhHHhhH--hCCCCeeEEccCCCCccchh
Q 013173 145 NTFAEIDLGEALNLNIRRCK--YVKPTPVQRHAIPIS--IGGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 145 ~~f~~l~L~~~l~~~l~~~~--~~~pt~~Q~~~i~~i--~~g~d~lv~a~TGsGKT~~~ 199 (448)
.+|+++.-.+.+.+.+...- |..+ ..+..+ .-.+.+++.+|+|+|||+..
T Consensus 37 ~~~~~i~g~~~~~~~l~~l~~~~~~~-----~~l~~~~~~~~~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 37 VTFKDVAGAEEAKEELKEIVEFLKNP-----SRFHEMGARIPKGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CCGGGSSSCHHHHHHHHHHHHHHHCH-----HHHHHTTCCCCCEEEEECCTTSSHHHHH
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHCH-----HHHHHcCCCCCCeEEEECCCcChHHHHH
Confidence 45777766666655554321 1111 112111 01234999999999999853
No 377
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=50.48 E-value=1.1e+02 Score=28.22 Aligned_cols=27 Identities=11% Similarity=0.026 Sum_probs=23.4
Q ss_pred CCcEEEEeCchhhHHHHHHHHHHCCCC
Q 013173 404 QALTLVFVETKKGADALEHWLYMNGFP 430 (448)
Q Consensus 404 ~~~tlVF~~t~~~a~~l~~~L~~~g~~ 430 (448)
..++-|||.+-..|..+.+.|...|+.
T Consensus 241 ~~~~ai~~~nd~~A~g~~~al~~~G~~ 267 (338)
T 3dbi_A 241 AKFSALVASNDDMAIGAMKALHERGVA 267 (338)
T ss_dssp CCCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred CCCeEEEECChHHHHHHHHHHHHcCCC
Confidence 456899999999999999999998864
No 378
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=50.43 E-value=78 Score=28.74 Aligned_cols=27 Identities=19% Similarity=0.033 Sum_probs=23.5
Q ss_pred CCcEEEEeCchhhHHHHHHHHHHCCCC
Q 013173 404 QALTLVFVETKKGADALEHWLYMNGFP 430 (448)
Q Consensus 404 ~~~tlVF~~t~~~a~~l~~~L~~~g~~ 430 (448)
..++-|||.+-..|..+.+.|...|+.
T Consensus 196 ~~~~ai~~~nd~~A~g~~~al~~~G~~ 222 (303)
T 3kke_A 196 DGPTAVVVASVNAAVGALSTALRLGLR 222 (303)
T ss_dssp TSCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred CCCcEEEECCHHHHHHHHHHHHHcCCC
Confidence 456899999999999999999998864
No 379
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=50.42 E-value=5.2 Score=34.78 Aligned_cols=19 Identities=32% Similarity=0.424 Sum_probs=16.3
Q ss_pred CCCCeeEEccCCCCccchh
Q 013173 181 GGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~ 199 (448)
.+.-++++++.|||||+..
T Consensus 28 ~g~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4677999999999999954
No 380
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=50.33 E-value=26 Score=36.95 Aligned_cols=73 Identities=21% Similarity=0.201 Sum_probs=49.4
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhccc-----------------------------CCcEEEEEECCCChHHHHHHH---h
Q 013173 224 PLALILAPTRELSSQIHVEAKKFSYQ-----------------------------TGVKVVVAYGGAPINQQLREL---E 271 (448)
Q Consensus 224 ~~~lil~PtreL~~qi~~~~~~~~~~-----------------------------~~~~~~~~~gg~~~~~~~~~l---~ 271 (448)
..+||.+|++.-+..++..+.+.... ....+..++++.+..++.... .
T Consensus 238 ~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~ 317 (720)
T 2zj8_A 238 KGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFR 317 (720)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHH
T ss_pred CCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHH
Confidence 35999999999999998888764211 012377889998876654332 2
Q ss_pred c-CccEEEeChHHHHHHHhcccccCCCeeEEE
Q 013173 272 R-GVDILVATPGRLVDLLERARVSLQMIRYLA 302 (448)
Q Consensus 272 ~-~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lV 302 (448)
. ..+|||||. .+ ...+++..+.+||
T Consensus 318 ~g~~~vlvaT~-----~l-~~Gvdip~~~~VI 343 (720)
T 2zj8_A 318 KGIIKAVVATP-----TL-SAGINTPAFRVII 343 (720)
T ss_dssp TTSSCEEEECS-----TT-GGGCCCCBSEEEE
T ss_pred CCCCeEEEECc-----Hh-hccCCCCceEEEE
Confidence 3 378999994 22 2356788887644
No 381
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=50.23 E-value=6 Score=46.17 Aligned_cols=23 Identities=30% Similarity=0.189 Sum_probs=18.0
Q ss_pred CCCCeeEEccCCCCccchhhhhH
Q 013173 181 GGRDLMACAQTGSGKTAAFCFPI 203 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~~lpi 203 (448)
.|..+++.+++|+|||...+-.+
T Consensus 731 ~G~lVlI~G~PG~GKTtLal~lA 753 (1706)
T 3cmw_A 731 MGRIVEIYGPESSGKTTLTLQVI 753 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHH
T ss_pred CCceEEEECCCCCCcHHHHHHHH
Confidence 45779999999999998654433
No 382
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=50.02 E-value=4.9 Score=38.33 Aligned_cols=16 Identities=25% Similarity=0.312 Sum_probs=14.1
Q ss_pred CeeEEccCCCCccchh
Q 013173 184 DLMACAQTGSGKTAAF 199 (448)
Q Consensus 184 d~lv~a~TGsGKT~~~ 199 (448)
.+++++|||||||...
T Consensus 7 ~i~i~GptGsGKTtla 22 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLA 22 (323)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5889999999999864
No 383
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=49.83 E-value=8.4 Score=33.47 Aligned_cols=29 Identities=21% Similarity=0.246 Sum_probs=20.5
Q ss_pred CCCeeEEEEcCCccc--ccCCCHHHHHHHHH
Q 013173 295 LQMIRYLALDEADRM--LDMGFEPQIRKIVQ 323 (448)
Q Consensus 295 l~~v~~lVlDEah~l--l~~gf~~~i~~i~~ 323 (448)
+...++||+||+..| ++..|...+..++.
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~ 133 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLS 133 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHh
Confidence 456789999999888 44446666666655
No 384
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=49.70 E-value=6.5 Score=37.12 Aligned_cols=26 Identities=12% Similarity=0.084 Sum_probs=20.0
Q ss_pred CCCCeeEEccCCCCccchhhhhHHHHHh
Q 013173 181 GGRDLMACAQTGSGKTAAFCFPIISGIM 208 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~~lpil~~l~ 208 (448)
.|+-+.+++|+|||||+. +-+|..++
T Consensus 125 ~Ge~vaIvGpsGsGKSTL--l~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSML--CNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHH--HHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHH--HHHHhhhc
Confidence 577899999999999984 44555554
No 385
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=49.62 E-value=4.5 Score=41.06 Aligned_cols=71 Identities=13% Similarity=0.194 Sum_probs=44.9
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHH---HHHHhc-CccEEEeChHHHHHHHhcccccCCCee
Q 013173 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQ---LRELER-GVDILVATPGRLVDLLERARVSLQMIR 299 (448)
Q Consensus 224 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~---~~~l~~-~~~Ilv~Tp~~l~~~l~~~~~~l~~v~ 299 (448)
.++||.|+++.-|..++..+.+. +..+..++|+.+..+. .+.+.. ..+|||||. .+. ..+++.+++
T Consensus 358 ~~~LVF~~s~~~a~~l~~~L~~~----~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~-----~l~-~GiDip~v~ 427 (508)
T 3fho_A 358 GQSIIFCKKKDTAEEIARRMTAD----GHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTN-----VIA-RGIDVSQVN 427 (508)
T ss_dssp CCEEEBCSSTTTTTHHHHHHTTT----TCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----------CCCTTCC
T ss_pred CcEEEEECCHHHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCC-----hhh-cCCCccCCC
Confidence 46999999999999988888763 5667777887654322 233333 478999995 222 356888899
Q ss_pred EEEEc
Q 013173 300 YLALD 304 (448)
Q Consensus 300 ~lVlD 304 (448)
+||..
T Consensus 428 ~VI~~ 432 (508)
T 3fho_A 428 LVVNY 432 (508)
T ss_dssp EEEC-
T ss_pred EEEEE
Confidence 98853
No 386
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=49.52 E-value=5.2 Score=34.01 Aligned_cols=18 Identities=17% Similarity=0.298 Sum_probs=15.3
Q ss_pred CCCeeEEccCCCCccchh
Q 013173 182 GRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 182 g~d~lv~a~TGsGKT~~~ 199 (448)
+.-++++++.|||||+..
T Consensus 3 ~~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456899999999999953
No 387
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=49.31 E-value=19 Score=39.74 Aligned_cols=75 Identities=11% Similarity=0.131 Sum_probs=55.9
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHH---HHHhcC---ccEEEeChHHHHHHHhcccccCCC
Q 013173 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQL---RELERG---VDILVATPGRLVDLLERARVSLQM 297 (448)
Q Consensus 224 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~---~~l~~~---~~Ilv~Tp~~l~~~l~~~~~~l~~ 297 (448)
.++||.|+++.-+..+.+.+... .++++..++|+.+..+.. ..+..+ ++|||||. . + ...+++..
T Consensus 504 ~k~iVF~~~~~~~~~l~~~L~~~---~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~-v----~-~~GlDl~~ 574 (968)
T 3dmq_A 504 QKVLVICAKAATALQLEQVLRER---EGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSE-I----G-SEGRNFQF 574 (968)
T ss_dssp SCCCEECSSTHHHHHHHHHHHTT---TCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSC-C----T-TCSSCCTT
T ss_pred CCEEEEeCcHHHHHHHHHHHHHH---cCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecc-h----h-hcCCCccc
Confidence 45999999999999988888742 367899999998765443 344444 89999992 2 2 34578899
Q ss_pred eeEEEEcCCc
Q 013173 298 IRYLALDEAD 307 (448)
Q Consensus 298 v~~lVlDEah 307 (448)
+.+||+-+.+
T Consensus 575 ~~~VI~~d~p 584 (968)
T 3dmq_A 575 ASHMVMFDLP 584 (968)
T ss_dssp CCEEECSSCC
T ss_pred CcEEEEecCC
Confidence 9999987665
No 388
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=49.31 E-value=5.2 Score=33.67 Aligned_cols=16 Identities=25% Similarity=0.300 Sum_probs=13.7
Q ss_pred CeeEEccCCCCccchh
Q 013173 184 DLMACAQTGSGKTAAF 199 (448)
Q Consensus 184 d~lv~a~TGsGKT~~~ 199 (448)
-++++++.|||||+..
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 3789999999999954
No 389
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=49.02 E-value=9.2 Score=47.42 Aligned_cols=48 Identities=15% Similarity=0.156 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHCCCCCCCHHHH-hHHh---hHhCCCCeeEEccCCCCccchhh
Q 013173 152 LGEALNLNIRRCKYVKPTPVQR-HAIP---ISIGGRDLMACAQTGSGKTAAFC 200 (448)
Q Consensus 152 L~~~l~~~l~~~~~~~pt~~Q~-~~i~---~i~~g~d~lv~a~TGsGKT~~~~ 200 (448)
|...+.+.+.+.++ .|++.+. +++. .+....-+|+++|||||||.++-
T Consensus 873 l~~ai~~~~~~~~L-~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~ 924 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHL-VTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWE 924 (3245)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHH
T ss_pred HHHHHHHHHHHcCC-ccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHH
Confidence 55677777788887 4666544 3332 23345569999999999999865
No 390
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=48.84 E-value=5.3 Score=33.31 Aligned_cols=16 Identities=6% Similarity=-0.135 Sum_probs=13.7
Q ss_pred CeeEEccCCCCccchh
Q 013173 184 DLMACAQTGSGKTAAF 199 (448)
Q Consensus 184 d~lv~a~TGsGKT~~~ 199 (448)
-++++++.|||||+..
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999954
No 391
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=48.84 E-value=13 Score=35.30 Aligned_cols=17 Identities=24% Similarity=0.360 Sum_probs=15.0
Q ss_pred CCeeEEccCCCCccchh
Q 013173 183 RDLMACAQTGSGKTAAF 199 (448)
Q Consensus 183 ~d~lv~a~TGsGKT~~~ 199 (448)
..+++.+|+|+|||...
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 57999999999999854
No 392
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=48.81 E-value=7.6 Score=33.33 Aligned_cols=16 Identities=25% Similarity=0.505 Sum_probs=13.4
Q ss_pred CeeEEccCCCCccchh
Q 013173 184 DLMACAQTGSGKTAAF 199 (448)
Q Consensus 184 d~lv~a~TGsGKT~~~ 199 (448)
.+.+.+|+|+|||+..
T Consensus 2 ~i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999953
No 393
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=48.81 E-value=20 Score=32.98 Aligned_cols=43 Identities=12% Similarity=0.007 Sum_probs=29.2
Q ss_pred HHHHHHHHCCCCCCCHHHHhH-HhhHhCCC-----CeeEEccCCCCccchhh
Q 013173 155 ALNLNIRRCKYVKPTPVQRHA-IPISIGGR-----DLMACAQTGSGKTAAFC 200 (448)
Q Consensus 155 ~l~~~l~~~~~~~pt~~Q~~~-i~~i~~g~-----d~lv~a~TGsGKT~~~~ 200 (448)
.+.+.|+..||. |++-.. +..++.++ .+++.+|.|+|||+.+.
T Consensus 74 ~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 74 RIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp HHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 577777766654 555433 34445443 39999999999999654
No 394
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=48.65 E-value=7.9 Score=32.10 Aligned_cols=15 Identities=33% Similarity=0.397 Sum_probs=13.1
Q ss_pred CeeEEccCCCCccch
Q 013173 184 DLMACAQTGSGKTAA 198 (448)
Q Consensus 184 d~lv~a~TGsGKT~~ 198 (448)
-.++.+|+|+|||..
T Consensus 25 ~~~I~G~NGsGKSti 39 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 368899999999995
No 395
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=48.46 E-value=28 Score=34.80 Aligned_cols=40 Identities=10% Similarity=0.174 Sum_probs=33.5
Q ss_pred CCcEEEEeCchhhHHHHHHHHHHC----CCCeEEecCCCCHHHH
Q 013173 404 QALTLVFVETKKGADALEHWLYMN----GFPATTIHGDRTQQRT 443 (448)
Q Consensus 404 ~~~tlVF~~t~~~a~~l~~~L~~~----g~~~~~iHg~~~q~eR 443 (448)
..++||.|+|+.-+.++++.+... ++.+..+||+.+..++
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 95 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVS 95 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhh
Confidence 678999999999998888877664 8999999999966543
No 396
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=48.42 E-value=23 Score=31.06 Aligned_cols=41 Identities=22% Similarity=0.148 Sum_probs=30.3
Q ss_pred CCcEEEEeCchhhHHHHHHHHHHC---CCCeEEecCCCCHHHHH
Q 013173 404 QALTLVFVETKKGADALEHWLYMN---GFPATTIHGDRTQQRTS 444 (448)
Q Consensus 404 ~~~tlVF~~t~~~a~~l~~~L~~~---g~~~~~iHg~~~q~eR~ 444 (448)
+.++||.|+|+.-|.++++.+... ++.+..++|+.+..++.
T Consensus 94 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (228)
T 3iuy_A 94 GPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQI 137 (228)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CH
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHH
Confidence 677999999999999999999874 78899999988766443
No 397
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=48.28 E-value=8.1 Score=36.40 Aligned_cols=26 Identities=23% Similarity=0.433 Sum_probs=19.2
Q ss_pred CCCeeEEccCCCCccchhhhhHHHHHhh
Q 013173 182 GRDLMACAQTGSGKTAAFCFPIISGIMR 209 (448)
Q Consensus 182 g~d~lv~a~TGsGKT~~~~lpil~~l~~ 209 (448)
+.-+.+++++|||||+. +-+|..++.
T Consensus 102 g~vi~lvG~nGsGKTTl--l~~Lagll~ 127 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTT--IAKLGRYYQ 127 (304)
T ss_dssp SSEEEEECSTTSSHHHH--HHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHH--HHHHHHHHH
Confidence 55688999999999994 445555544
No 398
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=47.61 E-value=5.7 Score=38.17 Aligned_cols=16 Identities=31% Similarity=0.281 Sum_probs=14.0
Q ss_pred CeeEEccCCCCccchh
Q 013173 184 DLMACAQTGSGKTAAF 199 (448)
Q Consensus 184 d~lv~a~TGsGKT~~~ 199 (448)
-+++++|||||||...
T Consensus 9 lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 9 LIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCcCcHHHHH
Confidence 5789999999999864
No 399
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=47.46 E-value=4.3 Score=36.97 Aligned_cols=18 Identities=22% Similarity=0.385 Sum_probs=15.4
Q ss_pred CCCeeEEccCCCCccchh
Q 013173 182 GRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 182 g~d~lv~a~TGsGKT~~~ 199 (448)
.+.+++.+|+|+|||...
T Consensus 44 ~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CSCCCCBCSSCSSHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 456999999999999864
No 400
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=47.14 E-value=16 Score=37.93 Aligned_cols=22 Identities=18% Similarity=0.265 Sum_probs=18.9
Q ss_pred hHhCCCCeeEEccCCCCccchh
Q 013173 178 ISIGGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 178 ~i~~g~d~lv~a~TGsGKT~~~ 199 (448)
.+..+..+++.+|+|+|||+.+
T Consensus 56 ~i~~g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 56 AANQKRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHHTTCCEEEECCTTSSHHHHH
T ss_pred cccCCCEEEEEeCCCCCHHHHH
Confidence 4557889999999999999854
No 401
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=47.13 E-value=5.2 Score=33.74 Aligned_cols=18 Identities=28% Similarity=0.292 Sum_probs=15.3
Q ss_pred CCCeeEEccCCCCccchh
Q 013173 182 GRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 182 g~d~lv~a~TGsGKT~~~ 199 (448)
+.-++++++.|||||+..
T Consensus 8 g~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp SEEEEEECSTTSCHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 556899999999999854
No 402
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=47.04 E-value=1.5e+02 Score=26.21 Aligned_cols=174 Identities=8% Similarity=0.033 Sum_probs=91.7
Q ss_pred EEEEcCc--HHHHHHHHHHHHHhcccCCcE-EEEEECCCChHHHHHH----HhcCccEEEeChHHHHHHHhcccccCCCe
Q 013173 226 ALILAPT--RELSSQIHVEAKKFSYQTGVK-VVVAYGGAPINQQLRE----LERGVDILVATPGRLVDLLERARVSLQMI 298 (448)
Q Consensus 226 ~lil~Pt--reL~~qi~~~~~~~~~~~~~~-~~~~~gg~~~~~~~~~----l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v 298 (448)
+-+++|. .....++...+.+.+...++. +.++........+... ...++|-+|..|. .+. .+.-..+
T Consensus 13 Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~----~~~--~~~~~~i 86 (277)
T 3hs3_A 13 IGIIIPDLNNRFYAQIIDGIQEVIQKEGYTALISFSTNSDVKKYQNAIINFENNNVDGIITSAF----TIP--PNFHLNT 86 (277)
T ss_dssp EEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEEECC----CCC--TTCCCSS
T ss_pred EEEEeCCCCChhHHHHHHHHHHHHHHCCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEcch----HHH--HHHhCCC
Confidence 4444454 234445555555555556788 6666555554443322 2346776666661 111 1223456
Q ss_pred eEEEEcCC--cc---cccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchH-HHHHHHhh---hcCc-EEEEecccccc
Q 013173 299 RYLALDEA--DR---MLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKE-IQRLASDF---LANY-IFLAVGRVGSS 368 (448)
Q Consensus 299 ~~lVlDEa--h~---ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~-v~~l~~~~---l~~~-~~i~v~~~~~~ 368 (448)
-+|++|.. +. ..............++|. ...+++.+++...... ...-..-| +... +.+.
T Consensus 87 PvV~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~---~G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~------- 156 (277)
T 3hs3_A 87 PLVMYDSANINDDIVRIVSNNTKGGKESIKLLS---KKIEKVLIQHWPLSLPTIRERIEAMTAEASKLKIDYL------- 156 (277)
T ss_dssp CEEEESCCCCCSSSEEEEECHHHHHHHHHHTSC---TTCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEE-------
T ss_pred CEEEEcccccCCCCEEEEEChHHHHHHHHHHHH---hCCCEEEEEeCCCcCccHHHHHHHHHHHHHHCCCCCC-------
Confidence 67888754 11 122234556667777775 3456788887654221 11111112 2111 1110
Q ss_pred cCceeEEEEEecccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCC
Q 013173 369 TDLIVQRVEFVHESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFP 430 (448)
Q Consensus 369 ~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~ 430 (448)
.. ....+.. ...+.++|... ..++-|||.+-..|..+.+.|...|+.
T Consensus 157 -----~~-~~~~~~~-~~~~~~~l~~~--------~~~~ai~~~~d~~A~g~~~al~~~g~~ 203 (277)
T 3hs3_A 157 -----LE-ETPENNP-YISAQSALNKS--------NQFDAIITVNDLYAAEIIKEAKRRNLK 203 (277)
T ss_dssp -----EE-ECCSSCH-HHHHHHHHHTG--------GGCSEEECSSHHHHHHHHHHHHHTTCC
T ss_pred -----CC-CccCCch-HHHHHHHHcCC--------CCCCEEEECCHHHHHHHHHHHHHcCCC
Confidence 00 1111111 45555666543 446789999999999999999998864
No 403
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=47.00 E-value=6.7 Score=37.87 Aligned_cols=18 Identities=33% Similarity=0.444 Sum_probs=15.8
Q ss_pred CCCeeEEccCCCCccchh
Q 013173 182 GRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 182 g~d~lv~a~TGsGKT~~~ 199 (448)
..++++.+|+|+|||...
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 568999999999999854
No 404
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=46.92 E-value=5.7 Score=39.14 Aligned_cols=16 Identities=25% Similarity=0.353 Sum_probs=13.5
Q ss_pred CeeEEccCCCCccchh
Q 013173 184 DLMACAQTGSGKTAAF 199 (448)
Q Consensus 184 d~lv~a~TGsGKT~~~ 199 (448)
-++|++|||+|||...
T Consensus 4 ~i~i~GptgsGKttla 19 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLS 19 (409)
T ss_dssp EEEEEECSSSSHHHHH
T ss_pred EEEEECcchhhHHHHH
Confidence 3689999999999864
No 405
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=46.88 E-value=7.4 Score=35.55 Aligned_cols=20 Identities=35% Similarity=0.532 Sum_probs=17.6
Q ss_pred hCCCCeeEEccCCCCccchh
Q 013173 180 IGGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 180 ~~g~d~lv~a~TGsGKT~~~ 199 (448)
+.++.+++.++.|||||+..
T Consensus 46 l~g~~i~l~G~~GsGKSTl~ 65 (250)
T 3nwj_A 46 LNGRSMYLVGMMGSGKTTVG 65 (250)
T ss_dssp HTTCCEEEECSTTSCHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 35899999999999999964
No 406
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=46.50 E-value=12 Score=32.08 Aligned_cols=41 Identities=15% Similarity=0.242 Sum_probs=29.6
Q ss_pred CCeeEEEEcCCcccccCCCHHHHHHHHHHcCCCCCCCcEEEEEec
Q 013173 296 QMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSA 340 (448)
Q Consensus 296 ~~v~~lVlDEah~ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SA 340 (448)
....++++||.+.-||......+..++..+ ....|+|++|-
T Consensus 85 ~~~~~llLDEp~a~LD~~~~~~~~~~l~~~----~~~~~~ivith 125 (173)
T 3kta_B 85 KPAPFYLFDEIDAHLDDANVKRVADLIKES----SKESQFIVITL 125 (173)
T ss_dssp SCCSEEEEESTTTTCCHHHHHHHHHHHHHH----TTTSEEEEECS
T ss_pred CCCCEEEECCCccCCCHHHHHHHHHHHHHh----ccCCEEEEEEe
Confidence 345689999999999876666677777766 34467777653
No 407
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=46.01 E-value=6 Score=38.31 Aligned_cols=17 Identities=24% Similarity=0.341 Sum_probs=14.3
Q ss_pred CeeEEccCCCCccchhh
Q 013173 184 DLMACAQTGSGKTAAFC 200 (448)
Q Consensus 184 d~lv~a~TGsGKT~~~~ 200 (448)
-.+++++||+|||..+-
T Consensus 25 ~~~i~G~NGaGKTTll~ 41 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFE 41 (365)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 46799999999998653
No 408
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=45.92 E-value=75 Score=29.47 Aligned_cols=19 Identities=26% Similarity=0.281 Sum_probs=14.7
Q ss_pred CCCeeEEccCCCCccchhh
Q 013173 182 GRDLMACAQTGSGKTAAFC 200 (448)
Q Consensus 182 g~d~lv~a~TGsGKT~~~~ 200 (448)
++-+++++++|+|||+...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~ 116 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAG 116 (297)
T ss_dssp SEEEEEECSSCSSTTHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3457788999999998543
No 409
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=45.71 E-value=12 Score=37.39 Aligned_cols=67 Identities=10% Similarity=0.163 Sum_probs=43.8
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHHhc-CccEEEeChHHHHHHHhcccccCCCeeEEE
Q 013173 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELER-GVDILVATPGRLVDLLERARVSLQMIRYLA 302 (448)
Q Consensus 224 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~-~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lV 302 (448)
.++||.+|++.-|..+++.+++. ++++..+++... ......+.. ..+|||||- .+. ..+++.. ++||
T Consensus 191 ~~~LVF~~s~~~~~~l~~~L~~~----g~~v~~lh~~~R-~~~~~~f~~g~~~iLVaT~-----v~~-~GiDip~-~~VI 258 (459)
T 2z83_A 191 GKTVWFVASVKMGNEIAMCLQRA----GKKVIQLNRKSY-DTEYPKCKNGDWDFVITTD-----ISE-MGANFGA-SRVI 258 (459)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHT----TCCEEEESTTCC-CCCGGGSSSCCCSEEEESS-----CC----CCCSC-SEEE
T ss_pred CCEEEEeCChHHHHHHHHHHHhc----CCcEEecCHHHH-HHHHhhccCCCceEEEECC-----hHH-hCeecCC-CEEE
Confidence 45999999999999999999885 567777777432 112222222 378999994 222 2456666 6555
No 410
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=45.42 E-value=53 Score=33.55 Aligned_cols=78 Identities=12% Similarity=0.139 Sum_probs=49.7
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhccc----CCcEEEEEECCCCh--HHHHHHHhcC-cc---EEEeChHHHHHHHhcccc
Q 013173 224 PLALILAPTRELSSQIHVEAKKFSYQ----TGVKVVVAYGGAPI--NQQLRELERG-VD---ILVATPGRLVDLLERARV 293 (448)
Q Consensus 224 ~~~lil~PtreL~~qi~~~~~~~~~~----~~~~~~~~~gg~~~--~~~~~~l~~~-~~---Ilv~Tp~~l~~~l~~~~~ 293 (448)
.++||.|++++-|..+++.+.+.... ..-.+..++|..+. ......+.++ .+ |+|+|- ++ ...+
T Consensus 440 ~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~~r~~~l~~F~~~~~~~~~ilvtt~-----~l-~~Gi 513 (590)
T 3h1t_A 440 AKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGKIGKGHLSRFQELETSTPVILTTSQ-----LL-TTGV 513 (590)
T ss_dssp SEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHHHHHHHHHHHHCTTCCCCCEEEESS-----TT-TTTC
T ss_pred ccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChHHHHHHHHHHhCCCCCCCEEEEECC-----hh-hcCc
Confidence 57999999999999999999876421 12225555666543 1223344442 23 777762 22 2357
Q ss_pred cCCCeeEEEEcCCc
Q 013173 294 SLQMIRYLALDEAD 307 (448)
Q Consensus 294 ~l~~v~~lVlDEah 307 (448)
++..+.+||++..-
T Consensus 514 Dip~v~~Vi~~~~~ 527 (590)
T 3h1t_A 514 DAPTCKNVVLARVV 527 (590)
T ss_dssp CCTTEEEEEEESCC
T ss_pred cchheeEEEEEecC
Confidence 89999999987653
No 411
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=45.38 E-value=8.3 Score=36.28 Aligned_cols=27 Identities=19% Similarity=0.304 Sum_probs=19.5
Q ss_pred CCCCeeEEccCCCCccchhhhhHHHHHhh
Q 013173 181 GGRDLMACAQTGSGKTAAFCFPIISGIMR 209 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~~lpil~~l~~ 209 (448)
.|.-+.+++++|+|||+. +-+|..++.
T Consensus 99 ~g~vi~lvG~nGsGKTTl--l~~Lag~l~ 125 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTS--LGKLAHRLK 125 (302)
T ss_dssp SCEEEEEECCTTSCHHHH--HHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHH--HHHHHHHHH
Confidence 355688999999999994 445555544
No 412
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=45.26 E-value=6.5 Score=33.61 Aligned_cols=17 Identities=18% Similarity=0.356 Sum_probs=14.0
Q ss_pred CCeeEEccCCCCccchh
Q 013173 183 RDLMACAQTGSGKTAAF 199 (448)
Q Consensus 183 ~d~lv~a~TGsGKT~~~ 199 (448)
.-+++++++|||||+..
T Consensus 3 ~ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 34688999999999954
No 413
>4f67_A UPF0176 protein LPG2838; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.79A {Legionella pneumophila subsp}
Probab=45.24 E-value=14 Score=34.16 Aligned_cols=37 Identities=11% Similarity=0.154 Sum_probs=33.2
Q ss_pred CCcEEEEeCchhhHHHHHHHHHHCCC-CeEEecCCCCH
Q 013173 404 QALTLVFVETKKGADALEHWLYMNGF-PATTIHGDRTQ 440 (448)
Q Consensus 404 ~~~tlVF~~t~~~a~~l~~~L~~~g~-~~~~iHg~~~q 440 (448)
..++++||.+-..|...+.+|...|+ ++..+.|++..
T Consensus 181 dk~IVvyC~~G~RS~~Aa~~L~~~Gf~nV~~L~GGi~a 218 (265)
T 4f67_A 181 DKKIAMFCTGGIRCEKTTAYMKELGFEHVYQLHDGILN 218 (265)
T ss_dssp TSCEEEECSSSHHHHHHHHHHHHHTCSSEEEETTHHHH
T ss_pred CCeEEEEeCCChHHHHHHHHHHHcCCCCEEEecCHHHH
Confidence 67899999999999999999999999 58899998754
No 414
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=45.10 E-value=5.9 Score=34.38 Aligned_cols=19 Identities=26% Similarity=0.342 Sum_probs=16.2
Q ss_pred CCCCeeEEccCCCCccchh
Q 013173 181 GGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~ 199 (448)
.+.-+.+.++.|||||+..
T Consensus 24 ~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 5677899999999999854
No 415
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=44.87 E-value=30 Score=36.41 Aligned_cols=73 Identities=21% Similarity=0.198 Sum_probs=49.3
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhccc--------------------------CCcEEEEEECCCChHHHHHHHh---c-Cc
Q 013173 225 LALILAPTRELSSQIHVEAKKFSYQ--------------------------TGVKVVVAYGGAPINQQLRELE---R-GV 274 (448)
Q Consensus 225 ~~lil~PtreL~~qi~~~~~~~~~~--------------------------~~~~~~~~~gg~~~~~~~~~l~---~-~~ 274 (448)
.+||.+|++.-+..++..+...... ....+..++++.+..++..... . ..
T Consensus 244 ~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~ 323 (702)
T 2p6r_A 244 GVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNI 323 (702)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSC
T ss_pred CEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCC
Confidence 4999999999999988888754211 0123666899988766543332 2 47
Q ss_pred cEEEeChHHHHHHHhcccccCCCeeEEEE
Q 013173 275 DILVATPGRLVDLLERARVSLQMIRYLAL 303 (448)
Q Consensus 275 ~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVl 303 (448)
+|||||. .-...+++..+.+||-
T Consensus 324 ~vlvaT~------~l~~Gidip~~~~VI~ 346 (702)
T 2p6r_A 324 KVVVATP------TLAAGVNLPARRVIVR 346 (702)
T ss_dssp CEEEECS------TTTSSSCCCBSEEEEC
T ss_pred eEEEECc------HHhccCCCCceEEEEc
Confidence 9999995 2234567888877553
No 416
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=44.44 E-value=1.7e+02 Score=26.28 Aligned_cols=27 Identities=11% Similarity=-0.044 Sum_probs=23.6
Q ss_pred CCcEEEEeCchhhHHHHHHHHHHCCCC
Q 013173 404 QALTLVFVETKKGADALEHWLYMNGFP 430 (448)
Q Consensus 404 ~~~tlVF~~t~~~a~~l~~~L~~~g~~ 430 (448)
..++-|||.+-..|..+.+.|...|+.
T Consensus 196 ~~~~ai~~~~d~~A~g~~~al~~~g~~ 222 (301)
T 3miz_A 196 DRPTAIMSGNDEMAIQIYIAAMALGLR 222 (301)
T ss_dssp TCCSEEEESSHHHHHHHHHHHHTTTCC
T ss_pred CCCcEEEECCHHHHHHHHHHHHHcCCC
Confidence 456789999999999999999999875
No 417
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=44.36 E-value=37 Score=33.98 Aligned_cols=40 Identities=10% Similarity=0.179 Sum_probs=30.7
Q ss_pred CCcEEEEeCchhhHHHHHHHHHHC----CCCeEEecCCCCHHHH
Q 013173 404 QALTLVFVETKKGADALEHWLYMN----GFPATTIHGDRTQQRT 443 (448)
Q Consensus 404 ~~~tlVF~~t~~~a~~l~~~L~~~----g~~~~~iHg~~~q~eR 443 (448)
..++||.|+++.-+.++++.+... ++.+..+||+.+..++
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 98 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVS 98 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----C
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchh
Confidence 667999999999999888888765 8999999999876543
No 418
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=44.16 E-value=5.2 Score=34.02 Aligned_cols=19 Identities=21% Similarity=0.350 Sum_probs=15.7
Q ss_pred CCCCeeEEccCCCCccchh
Q 013173 181 GGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~ 199 (448)
.|..++++++.|||||+..
T Consensus 3 ~g~~I~l~G~~GsGKST~~ 21 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQA 21 (186)
T ss_dssp CEEEEEEECCTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3456899999999999954
No 419
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=44.16 E-value=6.7 Score=36.42 Aligned_cols=18 Identities=28% Similarity=0.278 Sum_probs=15.2
Q ss_pred CCeeEEccCCCCccchhh
Q 013173 183 RDLMACAQTGSGKTAAFC 200 (448)
Q Consensus 183 ~d~lv~a~TGsGKT~~~~ 200 (448)
..+++.+|+|+|||...-
T Consensus 48 ~~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAK 65 (311)
T ss_dssp EEEEEESCSSSSHHHHHH
T ss_pred eEEEEECCCCcCHHHHHH
Confidence 369999999999998643
No 420
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=44.04 E-value=7.3 Score=36.29 Aligned_cols=17 Identities=35% Similarity=0.436 Sum_probs=14.5
Q ss_pred CCeeEEccCCCCccchh
Q 013173 183 RDLMACAQTGSGKTAAF 199 (448)
Q Consensus 183 ~d~lv~a~TGsGKT~~~ 199 (448)
.-++++++.|||||+..
T Consensus 34 ~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp EEEEEECCTTSCTHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45899999999999854
No 421
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=43.67 E-value=7.8 Score=44.23 Aligned_cols=30 Identities=27% Similarity=0.325 Sum_probs=21.7
Q ss_pred CCeeEEEEcCCcccccCCCHHHHHHHHHHc
Q 013173 296 QMIRYLALDEADRMLDMGFEPQIRKIVQQM 325 (448)
Q Consensus 296 ~~v~~lVlDEah~ll~~gf~~~i~~i~~~l 325 (448)
.+-++||+||+-.-+|..-+..+...+..+
T Consensus 543 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~ 572 (1284)
T 3g5u_A 543 RNPKILLLDEATSALDTESEAVVQAALDKA 572 (1284)
T ss_dssp HCCSEEEEESTTCSSCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 456789999999888865555566666554
No 422
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=43.63 E-value=6.7 Score=37.71 Aligned_cols=19 Identities=21% Similarity=0.296 Sum_probs=16.2
Q ss_pred CCCCeeEEccCCCCccchh
Q 013173 181 GGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~ 199 (448)
..+.+++.+|+|+|||+..
T Consensus 116 ~~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CCSEEEEESSTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3567999999999999854
No 423
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=43.44 E-value=7.1 Score=33.80 Aligned_cols=17 Identities=24% Similarity=0.387 Sum_probs=14.8
Q ss_pred CCeeEEccCCCCccchh
Q 013173 183 RDLMACAQTGSGKTAAF 199 (448)
Q Consensus 183 ~d~lv~a~TGsGKT~~~ 199 (448)
+-++++++.|||||+..
T Consensus 19 ~~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVG 35 (202)
T ss_dssp SCEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46899999999999954
No 424
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=43.32 E-value=1.7e+02 Score=25.75 Aligned_cols=177 Identities=15% Similarity=0.158 Sum_probs=89.0
Q ss_pred EEEEcCcH--HHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHH----hcCccEEEeChH---HHHHHHhcccccCC
Q 013173 226 ALILAPTR--ELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLREL----ERGVDILVATPG---RLVDLLERARVSLQ 296 (448)
Q Consensus 226 ~lil~Ptr--eL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~Ilv~Tp~---~l~~~l~~~~~~l~ 296 (448)
+-|++|.. ....++...+.+.+...++.+.++........+...+ ..++|-+|..|. .++..+.. .
T Consensus 10 Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~l~~-----~ 84 (276)
T 3jy6_A 10 IAVIVANIDDYFSTELFKGISSILESRGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFSNPQTVQEILH-----Q 84 (276)
T ss_dssp EEEEESCTTSHHHHHHHHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCCHHHHHHHHT-----T
T ss_pred EEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCcHHHHHHHHH-----C
Confidence 34444432 2445556666666666688888877666554443222 345665554432 23333332 2
Q ss_pred CeeEEEEcCCcc-----cccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCc--hHHHHHHHhhhcCcEEEEeccccccc
Q 013173 297 MIRYLALDEADR-----MLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFP--KEIQRLASDFLANYIFLAVGRVGSST 369 (448)
Q Consensus 297 ~v~~lVlDEah~-----ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~--~~v~~l~~~~l~~~~~i~v~~~~~~~ 369 (448)
.+-+|++|.... ............+.++|.. ...+++.+++.... .....-..-|..-....
T Consensus 85 ~iPvV~i~~~~~~~~~~~V~~D~~~~g~~a~~~L~~--~G~~~I~~i~~~~~~~~~~~~R~~gf~~~l~~~--------- 153 (276)
T 3jy6_A 85 QMPVVSVDREMDACPWPQVVTDNFEAAKAATTAFRQ--QGYQHVVVLTSELELSRTRQERYRGILAAAQDV--------- 153 (276)
T ss_dssp SSCEEEESCCCTTCSSCEEECCHHHHHHHHHHHHHT--TTCCEEEEEEECSTTCHHHHHHHHHHHTTCSEE---------
T ss_pred CCCEEEEecccCCCCCCEEEEChHHHHHHHHHHHHH--cCCCeEEEEecCCCCCchHHHHHHHHHHHHHhC---------
Confidence 444566664211 1122334445555555533 24467777777553 22222223332211110
Q ss_pred CceeEEEEEe----cccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCC
Q 013173 370 DLIVQRVEFV----HESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFP 430 (448)
Q Consensus 370 ~~i~q~~~~~----~~~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~ 430 (448)
. . +... ...+....+.++|.. ...++-|||.+-..|..+.+.|...|+.
T Consensus 154 ~-~---~~~~~~~~~~~~~~~~~~~~l~~--------~~~~~ai~~~~d~~a~g~~~al~~~g~~ 206 (276)
T 3jy6_A 154 D-V---LEVSESSYNHSEVHQRLTQLITQ--------NDQKTVAFALKERWLLEFFPNLIISGLI 206 (276)
T ss_dssp E-E---EEECSSSCCHHHHHHHHHHHHHS--------SSSCEEEEESSHHHHHHHSHHHHHSSSC
T ss_pred C-c---EEEeccccCCcHHHHHHHHHHhc--------CCCCcEEEEeCcHHHHHHHHHHHHcCCC
Confidence 0 0 1111 111223344444422 1567899999999999999999999864
No 425
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=43.26 E-value=22 Score=39.53 Aligned_cols=72 Identities=18% Similarity=0.186 Sum_probs=49.9
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHHhc-CccEEEeC---hHHHHHHHhcccccCCCe-
Q 013173 224 PLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELER-GVDILVAT---PGRLVDLLERARVSLQMI- 298 (448)
Q Consensus 224 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~-~~~Ilv~T---p~~l~~~l~~~~~~l~~v- 298 (448)
.++||.|+|+.-|..+++.++.. +++..++|+.. .....+.. ..+||||| .. .+. ..+++..|
T Consensus 276 ~~~LVF~~t~~~a~~l~~~L~~~-----~~v~~lhg~~~--~~l~~F~~G~~~VLVaTas~Td----v~~-rGIDip~VI 343 (1054)
T 1gku_B 276 TGGIIYARTGEEAEEIYESLKNK-----FRIGIVTATKK--GDYEKFVEGEIDHLIGTAHYYG----TLV-RGLDLPERI 343 (1054)
T ss_dssp SCEEEEESSHHHHHHHHHTTTTS-----SCEEECTTSSS--HHHHHHHHTSCSEEEEECC-----------CCSCCTTTC
T ss_pred CCEEEEEcCHHHHHHHHHHHhhc-----cCeeEEeccHH--HHHHHHHcCCCcEEEEecCCCC----eeE-eccccCCcc
Confidence 56999999999998888877663 67888888874 33344444 47999994 22 233 35789994
Q ss_pred eEEEEcCCc
Q 013173 299 RYLALDEAD 307 (448)
Q Consensus 299 ~~lVlDEah 307 (448)
++||.=.+-
T Consensus 344 ~~VI~~~~P 352 (1054)
T 1gku_B 344 RFAVFVGCP 352 (1054)
T ss_dssp CEEEEESCC
T ss_pred cEEEEeCCC
Confidence 988876665
No 426
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=43.00 E-value=6.9 Score=36.99 Aligned_cols=18 Identities=22% Similarity=0.412 Sum_probs=15.5
Q ss_pred CCCeeEEccCCCCccchh
Q 013173 182 GRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 182 g~d~lv~a~TGsGKT~~~ 199 (448)
..++++.+++|+|||...
T Consensus 45 ~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp GCCEEEECCGGGCTTHHH
T ss_pred CceEEEECCCCccHHHHH
Confidence 457999999999999854
No 427
>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A
Probab=42.83 E-value=13 Score=33.04 Aligned_cols=37 Identities=14% Similarity=0.030 Sum_probs=32.4
Q ss_pred CCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCCH
Q 013173 404 QALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQ 440 (448)
Q Consensus 404 ~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q 440 (448)
..++||||.+-..+...+..|...|.++..|.|++..
T Consensus 184 ~~~iv~~C~~G~rs~~a~~~L~~~G~~v~~~~Gg~~~ 220 (230)
T 2eg4_A 184 GQEVGVYCHSGARSAVAFFVLRSLGVRARNYLGSMHE 220 (230)
T ss_dssp TCEEEEECSSSHHHHHHHHHHHHTTCEEEECSSHHHH
T ss_pred CCCEEEEcCChHHHHHHHHHHHHcCCCcEEecCcHHH
Confidence 6789999999999999999999999778888888654
No 428
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=42.68 E-value=27 Score=30.75 Aligned_cols=41 Identities=20% Similarity=0.106 Sum_probs=32.2
Q ss_pred CCcEEEEeCchhhHHHHHHHHHHC----CCCeEEecCCCCHHHHH
Q 013173 404 QALTLVFVETKKGADALEHWLYMN----GFPATTIHGDRTQQRTS 444 (448)
Q Consensus 404 ~~~tlVF~~t~~~a~~l~~~L~~~----g~~~~~iHg~~~q~eR~ 444 (448)
+.++||.|+|+.-|.++++.+... ++.+..+||+.+..+..
T Consensus 97 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 141 (236)
T 2pl3_A 97 GLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEA 141 (236)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHH
Confidence 567999999999999999988764 47899999988765443
No 429
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=42.61 E-value=4.9 Score=35.02 Aligned_cols=23 Identities=26% Similarity=0.099 Sum_probs=17.4
Q ss_pred hhHhCCCCeeEEccCCCCccchh
Q 013173 177 PISIGGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 177 ~~i~~g~d~lv~a~TGsGKT~~~ 199 (448)
+.+..+.-+.+.+++|||||+..
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLA 38 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHH
T ss_pred ccCCCCeEEEEECCCCCCHHHHH
Confidence 33445566889999999999854
No 430
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=42.33 E-value=10 Score=33.00 Aligned_cols=18 Identities=28% Similarity=0.102 Sum_probs=14.5
Q ss_pred CCCeeEEccCCCCccchh
Q 013173 182 GRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 182 g~d~lv~a~TGsGKT~~~ 199 (448)
+.-+.+.+++|||||+..
T Consensus 6 ~~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLA 23 (211)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred cEEEEEECCCCCCHHHHH
Confidence 445779999999999853
No 431
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=42.01 E-value=5.6 Score=39.50 Aligned_cols=54 Identities=20% Similarity=0.241 Sum_probs=30.1
Q ss_pred cCCCcccCCCCHHHHHHHHHC---CCCCCCHHHHhHHhhHhCCCCeeEEccCCCCccchh
Q 013173 143 AVNTFAEIDLGEALNLNIRRC---KYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 143 ~~~~f~~l~L~~~l~~~l~~~---~~~~pt~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~ 199 (448)
|-.+|++.+=-+.+++.|.+. .+..|--++..-+ .--+-+++.+|.|||||+..
T Consensus 167 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~---~~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 167 PDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGI---DPPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC---CCCCEEEEESCTTTTHHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCceEEEECCCCCCHHHHH
Confidence 345788886445555554431 1111222222111 12366999999999999853
No 432
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=41.76 E-value=2.1e+02 Score=26.26 Aligned_cols=161 Identities=7% Similarity=-0.045 Sum_probs=80.6
Q ss_pred HHHHHHHHHhcccCCcEEEEEECCCChHHHHHH----HhcCccEEEeChHHHHHHHhcccccCCCeeEEEEcCCcc----
Q 013173 237 SQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRE----LERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADR---- 308 (448)
Q Consensus 237 ~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~----l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~---- 308 (448)
.++...+.+.+...++.+.++.... ...+... ...++|-||..|. +. .+.-..+-+|++|....
T Consensus 80 ~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~l~~~~vdGiIi~~~-----~~--~~~~~~iPvV~~~~~~~~~~~ 151 (333)
T 3jvd_A 80 SESLQTIQQDLKAAGYQMLVAEANS-VQAQDVVMESLISIQAAGIIHVPV-----VG--SIAPEGIPMVQLTRGELGPGF 151 (333)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEECCS-HHHHHHHHHHHHHHTCSEEEECCC-----TT--CCC-CCSCEEEECC----CCS
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCC-hHHHHHHHHHHHhCCCCEEEEcch-----HH--HHhhCCCCEEEECccCCCCCC
Confidence 3344444444444467777776655 4333222 2346776666665 11 12234566777775321
Q ss_pred -cccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCch-HHHHHHHhh---hcCcEEEEecccccccCceeEEEEE-e--c
Q 013173 309 -MLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPK-EIQRLASDF---LANYIFLAVGRVGSSTDLIVQRVEF-V--H 380 (448)
Q Consensus 309 -ll~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~-~v~~l~~~~---l~~~~~i~v~~~~~~~~~i~q~~~~-~--~ 380 (448)
....+.........++|-. ...+++.+++..... ....-..-| +... .+. .+.. . .
T Consensus 152 ~~V~~D~~~~~~~a~~~L~~--~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~-------------g~~-~~~~~~~~~ 215 (333)
T 3jvd_A 152 PRVLCDDEAGFFQLTESVLG--GSGMNIAALVGEESLSTTQERMRGISHAASIY-------------GAE-VTFHFGHYS 215 (333)
T ss_dssp CEEEECHHHHHHHHHHHHCC--SSSCEEEEEESCTTSHHHHHHHHHHHHHHHHT-------------TCE-EEEEECCSS
T ss_pred CEEEEChHHHHHHHHHHHHH--CCCCeEEEEeCCCCCccHHHHHHHHHHHHHHC-------------CCC-EEEecCCCC
Confidence 1112234556666677643 245677788766422 112212222 1111 011 1111 1 1
Q ss_pred ccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCC
Q 013173 381 ESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFP 430 (448)
Q Consensus 381 ~~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~ 430 (448)
...-...+.++|... . ++-|||.+-..|..+.+.|...|+.
T Consensus 216 ~~~~~~~~~~ll~~~--------~-~~ai~~~nd~~A~g~~~al~~~G~~ 256 (333)
T 3jvd_A 216 VESGEEMAQVVFNNG--------L-PDALIVASPRLMAGVMRAFTRLNVR 256 (333)
T ss_dssp HHHHHHHHHHHHHTC--------C-CSEEEECCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhcCC--------C-CcEEEECCHHHHHHHHHHHHHcCCC
Confidence 122233444455432 4 6899999999999999999998864
No 433
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=41.71 E-value=52 Score=36.75 Aligned_cols=41 Identities=5% Similarity=-0.095 Sum_probs=36.5
Q ss_pred CCcEEEEeCchhhHHHHHHHHHH---CCCCeEEecCCCCHHHHH
Q 013173 404 QALTLVFVETKKGADALEHWLYM---NGFPATTIHGDRTQQRTS 444 (448)
Q Consensus 404 ~~~tlVF~~t~~~a~~l~~~L~~---~g~~~~~iHg~~~q~eR~ 444 (448)
+.++||.++|+.-|.++++.|.. .++.+..+||+++..+|.
T Consensus 121 ~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~ 164 (1104)
T 4ddu_A 121 GKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKE 164 (1104)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHH
T ss_pred CCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHH
Confidence 67899999999999999999988 578999999999986653
No 434
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=41.64 E-value=14 Score=33.65 Aligned_cols=37 Identities=11% Similarity=0.106 Sum_probs=32.2
Q ss_pred CCcEEEEeCchhhHHHHHHHHHHCCCC-eEEecCCCCH
Q 013173 404 QALTLVFVETKKGADALEHWLYMNGFP-ATTIHGDRTQ 440 (448)
Q Consensus 404 ~~~tlVF~~t~~~a~~l~~~L~~~g~~-~~~iHg~~~q 440 (448)
..++||||.+-..+...+..|...|++ +..|.|++..
T Consensus 223 ~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~~ 260 (271)
T 1e0c_A 223 DKEIVTHCQTHHRSGLTYLIAKALGYPRVKGYAGSWGE 260 (271)
T ss_dssp TSEEEEECSSSSHHHHHHHHHHHTTCSCEEECSSHHHH
T ss_pred CCCEEEECCchHHHHHHHHHHHHcCCCCceeeCCcHHH
Confidence 678999999998999999999999995 8888887643
No 435
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=41.56 E-value=7.1 Score=35.19 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=18.9
Q ss_pred CCCCeeEEccCCCCccchhhhhHHHHH
Q 013173 181 GGRDLMACAQTGSGKTAAFCFPIISGI 207 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~~lpil~~l 207 (448)
.|.-+.+.+|+|||||+. +-+|..+
T Consensus 30 ~Ge~~~iiG~nGsGKSTL--l~~l~Gl 54 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTM--LNIIGCL 54 (235)
T ss_dssp TTCEEEEECSTTSSHHHH--HHHHTTS
T ss_pred CCCEEEEECCCCCcHHHH--HHHHhcC
Confidence 577789999999999983 4444444
No 436
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=41.49 E-value=8.8 Score=32.75 Aligned_cols=19 Identities=21% Similarity=0.274 Sum_probs=16.2
Q ss_pred CCCCeeEEccCCCCccchh
Q 013173 181 GGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~ 199 (448)
.+.-++++++.|||||+..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~ 26 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQC 26 (196)
T ss_dssp TSCEEEEEECTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5667999999999999954
No 437
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=41.30 E-value=46 Score=29.92 Aligned_cols=27 Identities=11% Similarity=0.031 Sum_probs=23.3
Q ss_pred CCcEEEEeCchhhHHHHHHHHHHCCCC
Q 013173 404 QALTLVFVETKKGADALEHWLYMNGFP 430 (448)
Q Consensus 404 ~~~tlVF~~t~~~a~~l~~~L~~~g~~ 430 (448)
..++-|||.+-..|..+.+.|...|+.
T Consensus 187 ~~~~ai~~~~d~~a~g~~~al~~~g~~ 213 (289)
T 3g85_A 187 NTPKALFCNSDSIALGVISVLNKRQIS 213 (289)
T ss_dssp SCCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCC
Confidence 456789999999999999999998864
No 438
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=41.26 E-value=1e+02 Score=34.22 Aligned_cols=39 Identities=5% Similarity=0.011 Sum_probs=28.8
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHhcc--------cCCcEEEEEECC
Q 013173 222 VYPLALILAPTRELSSQIHVEAKKFSY--------QTGVKVVVAYGG 260 (448)
Q Consensus 222 ~~~~~lil~PtreL~~qi~~~~~~~~~--------~~~~~~~~~~gg 260 (448)
.+.++||+|.+++-|..+++.+.++.. ...+++.+++.+
T Consensus 536 ~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~ 582 (1038)
T 2w00_A 536 KGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSF 582 (1038)
T ss_dssp CCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeC
Confidence 345799999999999999999988752 123566555544
No 439
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=41.18 E-value=9 Score=33.49 Aligned_cols=30 Identities=20% Similarity=0.180 Sum_probs=21.2
Q ss_pred CHHHHhHHhhHhCCCCeeEEccCCCCccchh
Q 013173 169 TPVQRHAIPISIGGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 169 t~~Q~~~i~~i~~g~d~lv~a~TGsGKT~~~ 199 (448)
++.+... ..+..+.-++++++.|||||+..
T Consensus 13 ~~~~r~~-~~~~~~~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 13 TRSERTE-LRNQRGLTIWLTGLSASGKSTLA 42 (211)
T ss_dssp CHHHHHH-HHTSSCEEEEEECSTTSSHHHHH
T ss_pred CHHHhhc-ccCCCCCEEEEECCCCCCHHHHH
Confidence 4444444 23446778999999999999854
No 440
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=41.14 E-value=8.1 Score=32.23 Aligned_cols=18 Identities=28% Similarity=0.331 Sum_probs=15.4
Q ss_pred CCeeEEccCCCCccchhh
Q 013173 183 RDLMACAQTGSGKTAAFC 200 (448)
Q Consensus 183 ~d~lv~a~TGsGKT~~~~ 200 (448)
+++++.+..|||||++.-
T Consensus 8 ~~i~l~G~~GsGKSTva~ 25 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQ 25 (168)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 578999999999999643
No 441
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=40.99 E-value=43 Score=28.46 Aligned_cols=41 Identities=15% Similarity=0.107 Sum_probs=33.8
Q ss_pred CCcEEEEeCchhhHHHHHHHHHHC-----CCCeEEecCCCCHHHHH
Q 013173 404 QALTLVFVETKKGADALEHWLYMN-----GFPATTIHGDRTQQRTS 444 (448)
Q Consensus 404 ~~~tlVF~~t~~~a~~l~~~L~~~-----g~~~~~iHg~~~q~eR~ 444 (448)
..++||.|+++.-+.++++.+... ++.+..++|+....+..
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 116 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDI 116 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHH
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHH
Confidence 567999999999999998888653 67899999998876543
No 442
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=40.89 E-value=51 Score=35.31 Aligned_cols=43 Identities=14% Similarity=-0.065 Sum_probs=36.7
Q ss_pred CCcEEEEeCchhhHHHHHHHHHHC----CCCeEEecCCCCHHHHHHh
Q 013173 404 QALTLVFVETKKGADALEHWLYMN----GFPATTIHGDRTQQRTSIE 446 (448)
Q Consensus 404 ~~~tlVF~~t~~~a~~l~~~L~~~----g~~~~~iHg~~~q~eR~~~ 446 (448)
+.+++|.|+|+.-|.++++.+... ++++..+||+++..+|.++
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~ 463 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKI 463 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHH
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHH
Confidence 668999999999998888877543 7999999999999888654
No 443
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=40.59 E-value=9.3 Score=32.17 Aligned_cols=16 Identities=25% Similarity=0.370 Sum_probs=14.2
Q ss_pred CeeEEccCCCCccchh
Q 013173 184 DLMACAQTGSGKTAAF 199 (448)
Q Consensus 184 d~lv~a~TGsGKT~~~ 199 (448)
.++++++.|||||+..
T Consensus 6 ~i~i~G~~GsGKsTla 21 (175)
T 1via_A 6 NIVFIGFMGSGKSTLA 21 (175)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 6889999999999854
No 444
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=40.42 E-value=9.4 Score=32.08 Aligned_cols=26 Identities=15% Similarity=0.027 Sum_probs=18.9
Q ss_pred CCCCeeEEccCCCCccchhhhhHHHHHh
Q 013173 181 GGRDLMACAQTGSGKTAAFCFPIISGIM 208 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~~lpil~~l~ 208 (448)
.|.-+.+.++.|+|||+. +-+|..++
T Consensus 32 ~Ge~v~L~G~nGaGKTTL--lr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTL--TRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHH--HHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHH--HHHHHHhC
Confidence 566688999999999993 44444443
No 445
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=40.38 E-value=47 Score=35.54 Aligned_cols=64 Identities=13% Similarity=0.137 Sum_probs=39.3
Q ss_pred cccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHC----CCCeEEecCCCCHHHH
Q 013173 380 HESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMN----GFPATTIHGDRTQQRT 443 (448)
Q Consensus 380 ~~~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~----g~~~~~iHg~~~q~eR 443 (448)
....|.....-.+.........+...++||.|+++.-+.++.+.|... ++.+..+||+.+..++
T Consensus 272 TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~ 339 (797)
T 4a2q_A 272 TGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVS 339 (797)
T ss_dssp TTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----C
T ss_pred CCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhh
Confidence 344565443333333222222223678999999999999988887665 8999999999976653
No 446
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=40.23 E-value=1.4e+02 Score=26.33 Aligned_cols=167 Identities=9% Similarity=-0.015 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHhcccCCcEEEEEECCCChH---HHHH-HHhcCccEEEeChHHH-HHHHhcccccCCCeeEEEEcCCc-c
Q 013173 235 LSSQIHVEAKKFSYQTGVKVVVAYGGAPIN---QQLR-ELERGVDILVATPGRL-VDLLERARVSLQMIRYLALDEAD-R 308 (448)
Q Consensus 235 L~~qi~~~~~~~~~~~~~~~~~~~gg~~~~---~~~~-~l~~~~~Ilv~Tp~~l-~~~l~~~~~~l~~v~~lVlDEah-~ 308 (448)
...++...+.+.+...++.+.++... +.. ...+ .+..++|-|| .+... ...+.. ..+-+|++|... .
T Consensus 19 ~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiI-~~~~~~~~~~~~-----~~iPvV~~~~~~~~ 91 (280)
T 3gyb_A 19 WFIDLIQSLSDVLTPKGYRLSVIDSL-TSQAGTDPITSALSMRPDGII-IAQDIPDFTVPD-----SLPPFVIAGTRITQ 91 (280)
T ss_dssp GGHHHHHHHHHHHGGGTCEEEEECSS-SSCSSSCHHHHHHTTCCSEEE-EESCC-------------CCCEEEESCCCSS
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCC-CchHHHHHHHHHHhCCCCEEE-ecCCCChhhHhh-----cCCCEEEECCCCCC
Confidence 34455555555555567777776655 322 1222 2345677766 43221 222222 566777777543 1
Q ss_pred c-----ccCCCHHHHHHHHHHcCCCCCCCcEEEEEeccCchHHHHHHHhh---hcCcEEEEecccccccCceeEEEEEe-
Q 013173 309 M-----LDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDF---LANYIFLAVGRVGSSTDLIVQRVEFV- 379 (448)
Q Consensus 309 l-----l~~gf~~~i~~i~~~l~~~~~~~~q~i~~SAT~~~~v~~l~~~~---l~~~~~i~v~~~~~~~~~i~q~~~~~- 379 (448)
- .........+.+.++|.. ...+++.+++..... ...-..-| +... +... ...+...
T Consensus 92 ~~~~~~V~~D~~~~g~~a~~~L~~--~G~~~i~~i~~~~~~-~~~R~~gf~~~l~~~--------~~~~---~~~~~~~~ 157 (280)
T 3gyb_A 92 ASTHDSVANDDFRGAEIATKHLID--LGHTHIAHLRVGSGA-GLRRFESFEATMRAH--------GLEP---LSNDYLGP 157 (280)
T ss_dssp SCSTTEEEECHHHHHHHHHHHHHH--TTCCSEEEECCSSHH-HHHHHHHHHHHHHHT--------TCCC---EECCCCSC
T ss_pred CCCCCEEEechHHHHHHHHHHHHH--CCCCeEEEEeCCCch-HHHHHHHHHHHHHHc--------CcCC---CcccccCC
Confidence 1 112233334444444422 234567888776544 33222222 1110 0000 0000001
Q ss_pred -cccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCC
Q 013173 380 -HESDKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFP 430 (448)
Q Consensus 380 -~~~~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~ 430 (448)
....-...+.++|... ..++-|||.+-..|..+.+.|.+.|+.
T Consensus 158 ~~~~~~~~~~~~~l~~~--------~~~~ai~~~~d~~a~g~~~al~~~g~~ 201 (280)
T 3gyb_A 158 AVEHAGYTETLALLKEH--------PEVTAIFSSNDITAIGALGAARELGLR 201 (280)
T ss_dssp CCHHHHHHHHHHHHHHC--------TTCCEEEESSHHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHhCC--------CCCCEEEECChHHHHHHHHHHHHcCCC
Confidence 1122234455555543 456789999999999999999988764
No 447
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=40.15 E-value=8.4 Score=32.79 Aligned_cols=18 Identities=17% Similarity=0.213 Sum_probs=15.0
Q ss_pred CCCeeEEccCCCCccchh
Q 013173 182 GRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 182 g~d~lv~a~TGsGKT~~~ 199 (448)
+.-++++++.|||||+..
T Consensus 5 ~~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLS 22 (193)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345889999999999954
No 448
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=40.10 E-value=6.2 Score=33.74 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=16.4
Q ss_pred CeeEEccCCCCccchhhhhHHHHHhh
Q 013173 184 DLMACAQTGSGKTAAFCFPIISGIMR 209 (448)
Q Consensus 184 d~lv~a~TGsGKT~~~~lpil~~l~~ 209 (448)
-+.+++++|||||+.. -+|..++.
T Consensus 4 ~v~IvG~SGsGKSTL~--~~L~~~~~ 27 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLI--TRMMPILR 27 (171)
T ss_dssp EEEEEESCHHHHHHHH--HHHHHHHH
T ss_pred EEEEECCCCCCHHHHH--HHHHHHhh
Confidence 3668899999999853 33444443
No 449
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=39.83 E-value=11 Score=38.99 Aligned_cols=16 Identities=13% Similarity=0.418 Sum_probs=14.5
Q ss_pred CeeEEccCCCCccchh
Q 013173 184 DLMACAQTGSGKTAAF 199 (448)
Q Consensus 184 d~lv~a~TGsGKT~~~ 199 (448)
++++.+++|+|||...
T Consensus 329 ~vLL~GppGtGKT~LA 344 (595)
T 3f9v_A 329 HILIIGDPGTAKSQML 344 (595)
T ss_dssp CEEEEESSCCTHHHHH
T ss_pred ceEEECCCchHHHHHH
Confidence 8999999999999853
No 450
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=39.64 E-value=8.9 Score=32.55 Aligned_cols=17 Identities=18% Similarity=0.247 Sum_probs=14.5
Q ss_pred CCeeEEccCCCCccchh
Q 013173 183 RDLMACAQTGSGKTAAF 199 (448)
Q Consensus 183 ~d~lv~a~TGsGKT~~~ 199 (448)
.-++++++.|||||+..
T Consensus 4 ~~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQC 20 (196)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45889999999999864
No 451
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=39.44 E-value=1.7e+02 Score=26.98 Aligned_cols=27 Identities=19% Similarity=-0.077 Sum_probs=23.0
Q ss_pred CCcEEEEeCchhhHHHHHHHHHHCCCC
Q 013173 404 QALTLVFVETKKGADALEHWLYMNGFP 430 (448)
Q Consensus 404 ~~~tlVF~~t~~~a~~l~~~L~~~g~~ 430 (448)
..++-|||.+-..|..+.+.|.+.|+.
T Consensus 237 ~~~~ai~~~nd~~A~g~~~al~~~G~~ 263 (340)
T 1qpz_A 237 HRPTAVFCGGDIMAMGALCAADEMGLR 263 (340)
T ss_dssp SCCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred CCCcEEEECCHHHHHHHHHHHHHcCCC
Confidence 456889999999999999999998864
No 452
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=39.43 E-value=13 Score=32.52 Aligned_cols=23 Identities=26% Similarity=0.222 Sum_probs=16.4
Q ss_pred CeeEEccCCCCccchhhhhHHHHHh
Q 013173 184 DLMACAQTGSGKTAAFCFPIISGIM 208 (448)
Q Consensus 184 d~lv~a~TGsGKT~~~~lpil~~l~ 208 (448)
-.++++++|+|||..+ -+|..++
T Consensus 25 ~~~I~G~NgsGKStil--~ai~~~l 47 (203)
T 3qks_A 25 INLIIGQNGSGKSSLL--DAILVGL 47 (203)
T ss_dssp EEEEECCTTSSHHHHH--HHHHHHH
T ss_pred eEEEEcCCCCCHHHHH--HHHHHHh
Confidence 4688999999999964 3444444
No 453
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=39.41 E-value=49 Score=33.43 Aligned_cols=124 Identities=19% Similarity=0.163 Sum_probs=0.0
Q ss_pred HhCCCCeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHhcccCCcEEEEEE
Q 013173 179 SIGGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKKFSYQTGVKVVVAY 258 (448)
Q Consensus 179 i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~ 258 (448)
+..|.-+++.+++|+|||......+-....... .++..-..+...|+...+..+...
T Consensus 278 i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~--------------~vi~~~~ee~~~~l~~~~~~~g~~--------- 334 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKTLLVSRFVENACANKE--------------RAILFAYEESRAQLLRNAYSWGMD--------- 334 (525)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHHHTTTC--------------CEEEEESSSCHHHHHHHHHTTSCC---------
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCC--------------CEEEEEEeCCHHHHHHHHHHcCCC---------
Q ss_pred CCCChHHHHHHHhcCccEEE-------eChHHHHHHHhcccccCCCeeEEEEcCCcccccCC-----CHHHHHHHHHHcC
Q 013173 259 GGAPINQQLRELERGVDILV-------ATPGRLVDLLERARVSLQMIRYLALDEADRMLDMG-----FEPQIRKIVQQMD 326 (448)
Q Consensus 259 gg~~~~~~~~~l~~~~~Ilv-------~Tp~~l~~~l~~~~~~l~~v~~lVlDEah~ll~~g-----f~~~i~~i~~~l~ 326 (448)
...+...-.+-+ .+.|.....+....+ ..+.++||+| -=.-++.. ....+..++..+
T Consensus 335 --------~~~~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l-~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l- 403 (525)
T 1tf7_A 335 --------FEEMERQNLLKIVCAYPESAGLEDHLQIIKSEIN-DFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYA- 403 (525)
T ss_dssp --------HHHHHHTTSEEECCCCGGGSCHHHHHHHHHHHHH-TTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHH-
T ss_pred --------HHHHHhCCCEEEEEeccccCCHHHHHHHHHHHHH-hhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHH-
Q ss_pred CCCCCCcEEEEEe
Q 013173 327 MPPPGMRQTMLFS 339 (448)
Q Consensus 327 ~~~~~~~q~i~~S 339 (448)
...-.+++++
T Consensus 404 ---~~~g~tvilv 413 (525)
T 1tf7_A 404 ---KQEEITGLFT 413 (525)
T ss_dssp ---HHTTCEEEEE
T ss_pred ---HhCCCEEEEE
No 454
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=39.21 E-value=9.8 Score=32.71 Aligned_cols=19 Identities=26% Similarity=0.212 Sum_probs=16.0
Q ss_pred CCCCeeEEccCCCCccchh
Q 013173 181 GGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~ 199 (448)
.+.-++++++.|||||+..
T Consensus 3 ~~~~I~l~G~~GsGKsT~~ 21 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQC 21 (204)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 4567899999999999954
No 455
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=39.18 E-value=11 Score=36.31 Aligned_cols=26 Identities=19% Similarity=0.330 Sum_probs=18.9
Q ss_pred CCCeeEEccCCCCccchhhhhHHHHHhh
Q 013173 182 GRDLMACAQTGSGKTAAFCFPIISGIMR 209 (448)
Q Consensus 182 g~d~lv~a~TGsGKT~~~~lpil~~l~~ 209 (448)
+.-+.+++++|+|||+. +-.|..++.
T Consensus 157 g~vi~lvG~nGsGKTTl--l~~Lag~l~ 182 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTS--LGKLAHRLK 182 (359)
T ss_dssp SEEEEEECCTTSCHHHH--HHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHH--HHHHHhhcc
Confidence 44578999999999994 445555544
No 456
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=38.74 E-value=8.8 Score=37.10 Aligned_cols=15 Identities=33% Similarity=0.651 Sum_probs=0.0
Q ss_pred eeEEccCCCCccchh
Q 013173 185 LMACAQTGSGKTAAF 199 (448)
Q Consensus 185 ~lv~a~TGsGKT~~~ 199 (448)
.+++++||+|||..+
T Consensus 28 ~vi~G~NGaGKT~il 42 (371)
T 3auy_A 28 VAIIGENGSGKSSIF 42 (371)
T ss_dssp EEEEECTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
No 457
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=38.45 E-value=9.9 Score=32.49 Aligned_cols=19 Identities=21% Similarity=0.265 Sum_probs=15.8
Q ss_pred CCCCeeEEccCCCCccchh
Q 013173 181 GGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~ 199 (448)
.+.-++++++.|||||+..
T Consensus 11 ~~~~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQC 29 (199)
T ss_dssp HSCEEEEEECTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3567899999999999854
No 458
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=38.42 E-value=14 Score=37.03 Aligned_cols=20 Identities=25% Similarity=0.232 Sum_probs=16.5
Q ss_pred CCCCeeEEccCCCCccchhh
Q 013173 181 GGRDLMACAQTGSGKTAAFC 200 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~~ 200 (448)
...++++.+++|+|||....
T Consensus 200 ~~~~~LL~G~pG~GKT~la~ 219 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAE 219 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHH
Confidence 34679999999999999653
No 459
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=38.05 E-value=8.7 Score=34.65 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=19.3
Q ss_pred CCCCeeEEccCCCCccchhhhhHHHHHh
Q 013173 181 GGRDLMACAQTGSGKTAAFCFPIISGIM 208 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~~lpil~~l~ 208 (448)
.|.-+.+.+++|||||+. +=+|..++
T Consensus 30 ~Ge~~~i~G~nGsGKSTL--l~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSL--LSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHH--HHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHH--HHHHhcCC
Confidence 577889999999999994 44444443
No 460
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=38.02 E-value=2.1e+02 Score=25.26 Aligned_cols=38 Identities=11% Similarity=-0.024 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhcCCCCCCC--cEEEEeCchhhHHHHHHHHHHCCCC
Q 013173 385 RSHLMDLLHAQVANGVHGKQA--LTLVFVETKKGADALEHWLYMNGFP 430 (448)
Q Consensus 385 ~~~L~~ll~~~~~~~~~~~~~--~tlVF~~t~~~a~~l~~~L~~~g~~ 430 (448)
...+.++|... .. ++-|||.+-..|..+.+.|...|+.
T Consensus 187 ~~~~~~~l~~~--------~~~~~~ai~~~~d~~a~g~~~al~~~g~~ 226 (298)
T 3tb6_A 187 LEKVKATLEKN--------SKHMPTAILCYNDEIALKVIDMLREMDLK 226 (298)
T ss_dssp HHHHHHHHHHT--------TTSCCSEEECSSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhcC--------CCCCCeEEEEeCcHHHHHHHHHHHHcCCC
Confidence 45566666654 23 6789999999999999999998864
No 461
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=38.01 E-value=1.7e+02 Score=24.26 Aligned_cols=50 Identities=18% Similarity=0.168 Sum_probs=35.3
Q ss_pred chHHHHHHHHHHHHhcCCCCCCCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCC
Q 013173 383 DKRSHLMDLLHAQVANGVHGKQALTLVFVETKKGADALEHWLYMNGFPATTIHGD 437 (448)
Q Consensus 383 ~k~~~L~~ll~~~~~~~~~~~~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~ 437 (448)
+-...+.+.+.. ... + ...+-|.|.+..++..+.+.|...|+++..+..+
T Consensus 45 ~e~~~i~~~I~~-~~~---g-~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~ 94 (174)
T 3dmn_A 45 AGVDQVVDQLAM-NDS---E-RDTTAIIGKSLAECEALTKALKARGEQVTLIQTE 94 (174)
T ss_dssp HHHHHHHHHHHH-HHH---T-TCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSC
T ss_pred HHHHHHHHHHHH-hcc---C-CCcEEEEecCHHHHHHHHHHHHHcCCcceeeccc
Confidence 334455555554 211 1 4558889999999999999999998888776653
No 462
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=38.00 E-value=8.9 Score=32.40 Aligned_cols=19 Identities=26% Similarity=0.366 Sum_probs=15.5
Q ss_pred CCCCeeEEccCCCCccchh
Q 013173 181 GGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~ 199 (448)
.|.-+++.++.|||||+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3556889999999999853
No 463
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=37.80 E-value=9.5 Score=32.31 Aligned_cols=16 Identities=19% Similarity=0.256 Sum_probs=13.6
Q ss_pred CeeEEccCCCCccchh
Q 013173 184 DLMACAQTGSGKTAAF 199 (448)
Q Consensus 184 d~lv~a~TGsGKT~~~ 199 (448)
-++++++.|||||+..
T Consensus 3 ~I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999853
No 464
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=37.67 E-value=3.3e+02 Score=28.46 Aligned_cols=41 Identities=15% Similarity=0.091 Sum_probs=32.2
Q ss_pred CCcEEEEeCchhhHHHHHHHHHHCCCCeEEecCCCCHHHHHH
Q 013173 404 QALTLVFVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSI 445 (448)
Q Consensus 404 ~~~tlVF~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~ 445 (448)
..-+-|.|.+...+..+.+.|...|+++....| .+-.+|..
T Consensus 351 ~~diAIL~R~~~~~~~le~~L~~~gIPy~~~g~-~~f~~~~e 391 (724)
T 1pjr_A 351 YRDFAVLYRTNAQSRVMEEMLLKANIPYQIVGG-LKFYDRKE 391 (724)
T ss_dssp GGGEEEEESSGGGHHHHHHHHHHTTCCEEEETS-CCGGGSHH
T ss_pred hhheeeeeecchhHHHHHHHHHHcCCCEEEeCC-cchhhCHH
Confidence 345888899999999999999999999877654 55555543
No 465
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=37.59 E-value=49 Score=28.30 Aligned_cols=43 Identities=14% Similarity=0.263 Sum_probs=32.9
Q ss_pred CCcEEEEeCc-----------hhhHHHHHHHHHHCCCCeEEecCCCCHHHHHHhh
Q 013173 404 QALTLVFVET-----------KKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 404 ~~~tlVF~~t-----------~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
.+.+|||.|. ...|+.|++.|...||.|. +|-+++..+=.++|
T Consensus 43 ~g~ALIInn~~f~~~~~R~G~~~Da~~L~~~f~~LgF~V~-~~~dlt~~em~~~l 96 (178)
T 2h54_A 43 TRLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVD-VKKNLTASDMTTEL 96 (178)
T ss_dssp CCEEEEEECCCCSSSCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHH
T ss_pred CCEEEEEehhhcCCCccCCCCHHHHHHHHHHHHHCCCEEE-EecCCCHHHHHHHH
Confidence 4568888876 3788999999999999875 56778877766554
No 466
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=37.57 E-value=22 Score=33.46 Aligned_cols=26 Identities=8% Similarity=0.165 Sum_probs=17.7
Q ss_pred CeeEEEEcCCcccccCCCHHHHHHHHHHc
Q 013173 297 MIRYLALDEADRMLDMGFEPQIRKIVQQM 325 (448)
Q Consensus 297 ~v~~lVlDEah~ll~~gf~~~i~~i~~~l 325 (448)
..+.+|++..|.+-+. ..+...+..+
T Consensus 151 ~ad~ill~k~dl~de~---~~l~~~l~~l 176 (318)
T 1nij_A 151 YADRILLTKTDVAGEA---EKLHERLARI 176 (318)
T ss_dssp TCSEEEEECTTTCSCT---HHHHHHHHHH
T ss_pred hCCEEEEECcccCCHH---HHHHHHHHHh
Confidence 4567888888876332 5666777666
No 467
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=37.54 E-value=32 Score=38.80 Aligned_cols=61 Identities=11% Similarity=0.074 Sum_probs=38.3
Q ss_pred CeeEEccCCCCccchhhhhHHHHHhhhhcccCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013173 184 DLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGSRTVYPLALILAPTRELSSQIHVEAKK 245 (448)
Q Consensus 184 d~lv~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~lil~PtreL~~qi~~~~~~ 245 (448)
..+|.|.-|||||.+-.-=++..++..+... .......-.++|+|+=|+.-+..+.+++.+
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~-~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~ 78 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSA-AFPRPLTVEELLVVTFTEAATAELRGRIRS 78 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSS-SCSSCCCGGGEEEEESCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCccc-ccCCCCCHHHEEEEeccHHHHHHHHHHHHH
Confidence 4499999999999986555555554321000 000001123599999998888887777654
No 468
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=37.27 E-value=11 Score=31.32 Aligned_cols=17 Identities=18% Similarity=0.264 Sum_probs=14.4
Q ss_pred CCeeEEccCCCCccchh
Q 013173 183 RDLMACAQTGSGKTAAF 199 (448)
Q Consensus 183 ~d~lv~a~TGsGKT~~~ 199 (448)
+-++++++.|||||+..
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVG 19 (173)
T ss_dssp CCEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 35889999999999854
No 469
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=37.22 E-value=10 Score=33.07 Aligned_cols=16 Identities=19% Similarity=0.376 Sum_probs=13.7
Q ss_pred CeeEEccCCCCccchh
Q 013173 184 DLMACAQTGSGKTAAF 199 (448)
Q Consensus 184 d~lv~a~TGsGKT~~~ 199 (448)
.+++.++.|||||+..
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQA 17 (216)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999964
No 470
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=37.09 E-value=5.8 Score=37.49 Aligned_cols=30 Identities=27% Similarity=0.310 Sum_probs=23.1
Q ss_pred CCeeEEEEcCCcccccCCCHHHHHHHHHHc
Q 013173 296 QMIRYLALDEADRMLDMGFEPQIRKIVQQM 325 (448)
Q Consensus 296 ~~v~~lVlDEah~ll~~gf~~~i~~i~~~l 325 (448)
.+-++||+||.=.-+|......+..++..+
T Consensus 207 ~~p~iLlLDEPts~LD~~~~~~i~~~l~~l 236 (306)
T 3nh6_A 207 KAPGIILLDEATSALDTSNERAIQASLAKV 236 (306)
T ss_dssp HCCSEEEEECCSSCCCHHHHHHHHHHHHHH
T ss_pred hCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 456789999999888876666777777666
No 471
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=37.01 E-value=9.9 Score=33.62 Aligned_cols=18 Identities=22% Similarity=0.143 Sum_probs=15.2
Q ss_pred CCCeeEEccCCCCccchh
Q 013173 182 GRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 182 g~d~lv~a~TGsGKT~~~ 199 (448)
..-+++++++|||||+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVS 24 (227)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456899999999999954
No 472
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=36.90 E-value=12 Score=31.59 Aligned_cols=17 Identities=24% Similarity=0.247 Sum_probs=14.5
Q ss_pred CCeeEEccCCCCccchh
Q 013173 183 RDLMACAQTGSGKTAAF 199 (448)
Q Consensus 183 ~d~lv~a~TGsGKT~~~ 199 (448)
..++++++.|||||+..
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIG 19 (184)
T ss_dssp CSEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35889999999999964
No 473
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=36.88 E-value=11 Score=33.07 Aligned_cols=18 Identities=17% Similarity=0.158 Sum_probs=14.7
Q ss_pred CCeeEEccCCCCccchhh
Q 013173 183 RDLMACAQTGSGKTAAFC 200 (448)
Q Consensus 183 ~d~lv~a~TGsGKT~~~~ 200 (448)
..+.+.+++|||||+..-
T Consensus 6 ~~i~i~G~~GsGKSTl~~ 23 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCK 23 (227)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457899999999998543
No 474
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=36.85 E-value=10 Score=33.70 Aligned_cols=21 Identities=24% Similarity=0.219 Sum_probs=0.0
Q ss_pred HhCCCCeeEEccCCCCccchh
Q 013173 179 SIGGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 179 i~~g~d~lv~a~TGsGKT~~~ 199 (448)
+..|.-+.+.+|+|||||+..
T Consensus 32 i~~Ge~~~iiG~NGsGKSTLl 52 (214)
T 1sgw_A 32 IEKGNVVNFHGPNGIGKTTLL 52 (214)
T ss_dssp EETTCCEEEECCTTSSHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHH
No 475
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=36.73 E-value=8.9 Score=35.40 Aligned_cols=29 Identities=17% Similarity=0.330 Sum_probs=0.0
Q ss_pred HhCCCCeeEEccCCCCccchhhhhHHHHHhh
Q 013173 179 SIGGRDLMACAQTGSGKTAAFCFPIISGIMR 209 (448)
Q Consensus 179 i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~ 209 (448)
+..|.-+.+.+++|||||+ ++=+|..++.
T Consensus 42 i~~Ge~~~i~G~nGsGKST--Llk~l~Gl~~ 70 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKST--VAALLQNLYQ 70 (271)
T ss_dssp ECTTCEEEEECSTTSSHHH--HHHHHTTSSC
T ss_pred ECCCCEEEEECCCCCCHHH--HHHHHhcCCC
No 476
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=36.73 E-value=35 Score=29.56 Aligned_cols=41 Identities=10% Similarity=0.083 Sum_probs=28.6
Q ss_pred CCcEEEEeCchhhHHHHHHHHHHC----CCCeEEecCCCCHHHHH
Q 013173 404 QALTLVFVETKKGADALEHWLYMN----GFPATTIHGDRTQQRTS 444 (448)
Q Consensus 404 ~~~tlVF~~t~~~a~~l~~~L~~~----g~~~~~iHg~~~q~eR~ 444 (448)
..++||.|+++.-|.++++.+... ++.+..+||+.+..+..
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 126 (224)
T 1qde_A 82 APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDA 126 (224)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC--------
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHH
Confidence 568999999999999999888653 78899999988765543
No 477
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*
Probab=36.72 E-value=45 Score=30.63 Aligned_cols=43 Identities=21% Similarity=0.143 Sum_probs=34.3
Q ss_pred CCcEEEEeC---------------------chhhHHHHHHHHHHCCCCeEEecCCCCHHHHHHhh
Q 013173 404 QALTLVFVE---------------------TKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 404 ~~~tlVF~~---------------------t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
.+.+|||+| +...|+.|.+.|+..||.|. +|-+++.+|-.++|
T Consensus 17 rG~aLIInn~~F~~~~~~~~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V~-~~~dlt~~em~~~l 80 (271)
T 3h11_B 17 RGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHFEIK-PHDDCTVEQIYEIL 80 (271)
T ss_dssp CCEEEEEECCCCSHHHHTCGGGTTCCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHH
T ss_pred CCEEEEEEchhcCcccccccccccCCCCCCcHHHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHH
Confidence 567888888 45789999999999999865 56788888776655
No 478
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=36.43 E-value=10 Score=32.05 Aligned_cols=16 Identities=25% Similarity=0.331 Sum_probs=13.9
Q ss_pred CeeEEccCCCCccchh
Q 013173 184 DLMACAQTGSGKTAAF 199 (448)
Q Consensus 184 d~lv~a~TGsGKT~~~ 199 (448)
-++++++.|||||+..
T Consensus 8 ~I~l~G~~GsGKsT~~ 23 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQC 23 (194)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999954
No 479
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=36.38 E-value=2.3e+02 Score=25.11 Aligned_cols=27 Identities=15% Similarity=0.055 Sum_probs=22.8
Q ss_pred CCcEEEEeCchhhHHHHHHHHHHCCCC
Q 013173 404 QALTLVFVETKKGADALEHWLYMNGFP 430 (448)
Q Consensus 404 ~~~tlVF~~t~~~a~~l~~~L~~~g~~ 430 (448)
..++-|||.+-..|..+.+.|.+.|+.
T Consensus 183 ~~~~ai~~~~d~~A~g~~~al~~~g~~ 209 (285)
T 3c3k_A 183 VKPDAIFAISDVLAAGAIQALTESGLS 209 (285)
T ss_dssp SCCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred CCCeEEEECCHHHHHHHHHHHHHcCCC
Confidence 346789999999999999999988764
No 480
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A
Probab=36.31 E-value=28 Score=31.71 Aligned_cols=36 Identities=11% Similarity=0.179 Sum_probs=0.0
Q ss_pred CCCcEEEEeCc-hhhHHHHHHHHHHCCC-CeEEecCCC
Q 013173 403 KQALTLVFVET-KKGADALEHWLYMNGF-PATTIHGDR 438 (448)
Q Consensus 403 ~~~~tlVF~~t-~~~a~~l~~~L~~~g~-~~~~iHg~~ 438 (448)
+..++||||.+ ...+..++..|...|+ ++..+.|++
T Consensus 76 ~~~~vvvyc~~g~~~s~~a~~~L~~~G~~~v~~l~GG~ 113 (277)
T 3aay_A 76 NEDTVILYGGNNNWFAAYAYWYFKLYGHEKVKLLDGGR 113 (277)
T ss_dssp TTSEEEEECSGGGHHHHHHHHHHHHTTCCSEEEETTHH
T ss_pred CCCeEEEECCCCCchHHHHHHHHHHcCCCcEEEecCCH
No 481
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=36.19 E-value=2.3e+02 Score=25.15 Aligned_cols=27 Identities=19% Similarity=0.127 Sum_probs=22.9
Q ss_pred CCcEEEEeCchhhHHHHHHHHHHCCCC
Q 013173 404 QALTLVFVETKKGADALEHWLYMNGFP 430 (448)
Q Consensus 404 ~~~tlVF~~t~~~a~~l~~~L~~~g~~ 430 (448)
..++-|||.+-..|..+.+.|...|+.
T Consensus 194 ~~~~ai~~~~d~~A~g~~~al~~~G~~ 220 (289)
T 2fep_A 194 KKPTAILSATDEMALGIIHAAQDQGLS 220 (289)
T ss_dssp SCCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred CCCCEEEECCHHHHHHHHHHHHHcCCC
Confidence 456789999999999999999988763
No 482
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=36.13 E-value=2.3e+02 Score=25.20 Aligned_cols=27 Identities=15% Similarity=0.108 Sum_probs=23.5
Q ss_pred CCcEEEEeCchhhHHHHHHHHHHCCCC
Q 013173 404 QALTLVFVETKKGADALEHWLYMNGFP 430 (448)
Q Consensus 404 ~~~tlVF~~t~~~a~~l~~~L~~~g~~ 430 (448)
..++-|||.+-..|..+.+.|...|+.
T Consensus 186 ~~~~ai~~~nd~~A~g~~~al~~~G~~ 212 (294)
T 3qk7_A 186 VPPTAIITDCNMLGDGVASALDKAGLL 212 (294)
T ss_dssp SCCSEEEESSHHHHHHHHHHHHHTTCS
T ss_pred CCCcEEEECCHHHHHHHHHHHHHcCCC
Confidence 456889999999999999999998864
No 483
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=36.11 E-value=9.2 Score=35.17 Aligned_cols=29 Identities=17% Similarity=0.266 Sum_probs=0.0
Q ss_pred HhCCCCeeEEccCCCCccchhhhhHHHHHhh
Q 013173 179 SIGGRDLMACAQTGSGKTAAFCFPIISGIMR 209 (448)
Q Consensus 179 i~~g~d~lv~a~TGsGKT~~~~lpil~~l~~ 209 (448)
+..|.-+.+.+|+|||||+ ++=+|..++.
T Consensus 47 i~~Gei~~liG~NGsGKST--Llk~l~Gl~~ 75 (263)
T 2olj_A 47 IREGEVVVVIGPSGSGKST--FLRCLNLLED 75 (263)
T ss_dssp ECTTCEEEEECCTTSSHHH--HHHHHTTSSC
T ss_pred EcCCCEEEEEcCCCCcHHH--HHHHHHcCCC
No 484
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=35.92 E-value=25 Score=32.18 Aligned_cols=37 Identities=14% Similarity=0.181 Sum_probs=31.8
Q ss_pred CCcEEEEeCchhhHHHHHHHHH-HCCC-CeEEecCCCCH
Q 013173 404 QALTLVFVETKKGADALEHWLY-MNGF-PATTIHGDRTQ 440 (448)
Q Consensus 404 ~~~tlVF~~t~~~a~~l~~~L~-~~g~-~~~~iHg~~~q 440 (448)
..++||||.+-..+...+..|. ..|+ ++..|.|++..
T Consensus 233 ~~~ivvyC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~~~ 271 (285)
T 1uar_A 233 DKDIVVYCRIAERSSHSWFVLKYLLGYPHVKNYDGSWTE 271 (285)
T ss_dssp TSEEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHHHH
T ss_pred CCCEEEECCchHHHHHHHHHHHHHcCCCCcceeCchHHH
Confidence 6779999999888999999999 8999 58899887643
No 485
>2ouc_A Dual specificity protein phosphatase 10; rhodanese fold, hydrolase; 2.20A {Homo sapiens}
Probab=35.83 E-value=21 Score=28.55 Aligned_cols=37 Identities=14% Similarity=0.146 Sum_probs=29.3
Q ss_pred CCcEEEEeCchhh---------HHHHHHHHHHCCCCeEEecCCCCH
Q 013173 404 QALTLVFVETKKG---------ADALEHWLYMNGFPATTIHGDRTQ 440 (448)
Q Consensus 404 ~~~tlVF~~t~~~---------a~~l~~~L~~~g~~~~~iHg~~~q 440 (448)
..++||||.+-.. +..++..|...|+++..+.|++..
T Consensus 83 ~~~ivvyc~~g~~~~~~~~~~~~~~~~~~L~~~G~~v~~l~GG~~~ 128 (142)
T 2ouc_A 83 SKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGKEPLVLKGGLSS 128 (142)
T ss_dssp HSCEEEECSSCCCGGGCCTTSHHHHHHHHHHHTTCCCEEETTHHHH
T ss_pred CCcEEEEECCCCchhhcCcccHHHHHHHHHHHcCCcEEEEccCHHH
Confidence 4569999998665 356788899999999999998653
No 486
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=35.62 E-value=10 Score=32.24 Aligned_cols=19 Identities=32% Similarity=0.298 Sum_probs=15.8
Q ss_pred CCCCeeEEccCCCCccchh
Q 013173 181 GGRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 181 ~g~d~lv~a~TGsGKT~~~ 199 (448)
.+.-+++++..|||||+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~ 30 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIA 30 (186)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 3556899999999999954
No 487
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=35.50 E-value=11 Score=32.41 Aligned_cols=16 Identities=19% Similarity=0.329 Sum_probs=13.9
Q ss_pred CeeEEccCCCCccchh
Q 013173 184 DLMACAQTGSGKTAAF 199 (448)
Q Consensus 184 d~lv~a~TGsGKT~~~ 199 (448)
-++++++.|||||+..
T Consensus 17 ~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999854
No 488
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=35.46 E-value=11 Score=32.52 Aligned_cols=16 Identities=19% Similarity=0.299 Sum_probs=13.6
Q ss_pred CeeEEccCCCCccchh
Q 013173 184 DLMACAQTGSGKTAAF 199 (448)
Q Consensus 184 d~lv~a~TGsGKT~~~ 199 (448)
.+.++++.|||||+..
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4789999999999954
No 489
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=35.41 E-value=12 Score=31.45 Aligned_cols=19 Identities=21% Similarity=0.127 Sum_probs=11.7
Q ss_pred CCCeeEEccCCCCccchhh
Q 013173 182 GRDLMACAQTGSGKTAAFC 200 (448)
Q Consensus 182 g~d~lv~a~TGsGKT~~~~ 200 (448)
+.-+++++..|||||+..-
T Consensus 5 ~~~I~l~G~~GsGKST~a~ 23 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAH 23 (183)
T ss_dssp CCEEEEECCC----CHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4568899999999999643
No 490
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=35.35 E-value=11 Score=32.79 Aligned_cols=16 Identities=25% Similarity=0.341 Sum_probs=13.8
Q ss_pred CeeEEccCCCCccchh
Q 013173 184 DLMACAQTGSGKTAAF 199 (448)
Q Consensus 184 d~lv~a~TGsGKT~~~ 199 (448)
.+++.++.|||||+..
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQG 17 (216)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999964
No 491
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=35.32 E-value=11 Score=33.74 Aligned_cols=18 Identities=22% Similarity=0.169 Sum_probs=15.3
Q ss_pred CCCeeEEccCCCCccchh
Q 013173 182 GRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 182 g~d~lv~a~TGsGKT~~~ 199 (448)
..-++++++.|||||+..
T Consensus 27 ~~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 457899999999999854
No 492
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=35.27 E-value=23 Score=32.41 Aligned_cols=37 Identities=16% Similarity=0.062 Sum_probs=31.2
Q ss_pred CCcEEEEeCchhh-HHHHHHHHHHCCC-CeEEecCCCCH
Q 013173 404 QALTLVFVETKKG-ADALEHWLYMNGF-PATTIHGDRTQ 440 (448)
Q Consensus 404 ~~~tlVF~~t~~~-a~~l~~~L~~~g~-~~~~iHg~~~q 440 (448)
..++||||.+-.. +..++..|...|+ ++..|.|++..
T Consensus 86 ~~~ivvyc~~g~~~a~~a~~~L~~~G~~~v~~l~GG~~~ 124 (280)
T 1urh_A 86 DKHLIVYDEGNLFSAPRAWWMLRTFGVEKVSILGGGLAG 124 (280)
T ss_dssp TSEEEEECSSSCSSHHHHHHHHHHTTCSCEEEETTHHHH
T ss_pred CCeEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHHH
Confidence 6779999998665 8899999999999 58899987654
No 493
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=34.91 E-value=13 Score=32.61 Aligned_cols=18 Identities=22% Similarity=0.252 Sum_probs=15.2
Q ss_pred CCCeeEEccCCCCccchh
Q 013173 182 GRDLMACAQTGSGKTAAF 199 (448)
Q Consensus 182 g~d~lv~a~TGsGKT~~~ 199 (448)
...+++.++.|||||+..
T Consensus 5 ~~~I~l~G~~GsGKsT~~ 22 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQC 22 (222)
T ss_dssp SCCEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 356899999999999964
No 494
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=34.89 E-value=37 Score=27.18 Aligned_cols=38 Identities=11% Similarity=-0.045 Sum_probs=31.3
Q ss_pred EeCchhhHHHHHHHHHHCCCCeEEecCCCCHHHHHHhh
Q 013173 410 FVETKKGADALEHWLYMNGFPATTIHGDRTQQRTSIEI 447 (448)
Q Consensus 410 F~~t~~~a~~l~~~L~~~g~~~~~iHg~~~q~eR~~~l 447 (448)
||.+++.|..+..+|...|++-..+.=++.++.|++.+
T Consensus 12 ~c~~kk~c~~aK~lL~~kgV~feEidI~~d~~~r~eM~ 49 (121)
T 1u6t_A 12 STAIKKKQQDVLGFLEANKIGFEEKDIAANEENRKWMR 49 (121)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHH
Confidence 45567888999999999999988888888888887653
No 495
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=34.85 E-value=19 Score=30.73 Aligned_cols=15 Identities=27% Similarity=0.155 Sum_probs=12.7
Q ss_pred CeeEEccCCCCccch
Q 013173 184 DLMACAQTGSGKTAA 198 (448)
Q Consensus 184 d~lv~a~TGsGKT~~ 198 (448)
-+.++++.|||||+.
T Consensus 6 ~i~i~G~sGsGKTTl 20 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTL 20 (169)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 367899999999984
No 496
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=34.78 E-value=11 Score=34.64 Aligned_cols=30 Identities=27% Similarity=0.297 Sum_probs=23.7
Q ss_pred CCeeEEEEcCCcccccCCCHHHHHHHHHHc
Q 013173 296 QMIRYLALDEADRMLDMGFEPQIRKIVQQM 325 (448)
Q Consensus 296 ~~v~~lVlDEah~ll~~gf~~~i~~i~~~l 325 (448)
.+-++|++||.-.-||......+..++..+
T Consensus 172 ~~p~lllLDEPts~LD~~~~~~i~~~l~~l 201 (260)
T 2ghi_A 172 KDPKIVIFDEATSSLDSKTEYLFQKAVEDL 201 (260)
T ss_dssp HCCSEEEEECCCCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHh
Confidence 445789999999888876677777777777
No 497
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=34.75 E-value=10 Score=34.40 Aligned_cols=31 Identities=26% Similarity=0.320 Sum_probs=24.5
Q ss_pred CCCeeEEEEcCCcccccCCCHHHHHHHHHHc
Q 013173 295 LQMIRYLALDEADRMLDMGFEPQIRKIVQQM 325 (448)
Q Consensus 295 l~~v~~lVlDEah~ll~~gf~~~i~~i~~~l 325 (448)
+.+-++|++||.-.-||......+..++..+
T Consensus 161 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~ 191 (247)
T 2ff7_A 161 VNNPKILIFDEATSALDYESEHVIMRNMHKI 191 (247)
T ss_dssp TTCCSEEEECCCCSCCCHHHHHHHHHHHHHH
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 4566899999999888876667777777766
No 498
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=34.61 E-value=12 Score=32.07 Aligned_cols=14 Identities=21% Similarity=0.472 Sum_probs=0.0
Q ss_pred eeEEccCCCCccch
Q 013173 185 LMACAQTGSGKTAA 198 (448)
Q Consensus 185 ~lv~a~TGsGKT~~ 198 (448)
+++.++.|||||+.
T Consensus 3 I~i~G~~GsGKsT~ 16 (205)
T 2jaq_A 3 IAIFGTVGAGKSTI 16 (205)
T ss_dssp EEEECCTTSCHHHH
T ss_pred EEEECCCccCHHHH
No 499
>3lwd_A 6-phosphogluconolactonase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; 1.75A {Chromohalobacter salexigens}
Probab=34.43 E-value=63 Score=28.73 Aligned_cols=55 Identities=16% Similarity=0.196 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhcccCCcEEEEEECCCChHHHHHHHhcCccEEEeChHHHHHHHhcccccCCCeeEEEEcC
Q 013173 233 RELSSQIHVEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDE 305 (448)
Q Consensus 233 reL~~qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ilv~Tp~~l~~~l~~~~~~l~~v~~lVlDE 305 (448)
+.++..+.+.+++.....+.-+..+.||. ||..+.+.|....++.++|.++-+||
T Consensus 15 ~~~A~~i~~~i~~~i~~~~~~~l~LsgGs------------------tp~~~y~~L~~~~idw~~v~~f~~DE 69 (226)
T 3lwd_A 15 ERLADTVAQALEADLAKRERALLVVSGGS------------------TPKPFFTSLAAKALPWARVDVTLADE 69 (226)
T ss_dssp HHHHHHHHHHHHHHHTTSSCEEEEECCSS------------------TTHHHHHHHHTSCSCGGGEEEEESEE
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEcCCC------------------CHHHHHHHHHhcCCCchhEEEEEeee
No 500
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=34.43 E-value=13 Score=37.11 Aligned_cols=17 Identities=29% Similarity=0.517 Sum_probs=0.0
Q ss_pred CCeeEEccCCCCccchh
Q 013173 183 RDLMACAQTGSGKTAAF 199 (448)
Q Consensus 183 ~d~lv~a~TGsGKT~~~ 199 (448)
+++++.+|+|+|||+..
T Consensus 51 ~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred ceEEEEcCCCCCHHHHH
Done!