Query 013174
Match_columns 448
No_of_seqs 176 out of 486
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 01:09:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013174.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013174hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4302 Microtubule-associated 100.0 5.1E-78 1.1E-82 622.9 48.9 436 1-444 1-436 (660)
2 PF03999 MAP65_ASE1: Microtubu 100.0 1.7E-62 3.6E-67 524.3 1.8 384 38-445 3-404 (619)
3 KOG4302 Microtubule-associated 99.9 4.9E-21 1.1E-25 199.6 34.2 318 76-417 22-404 (660)
4 PF03999 MAP65_ASE1: Microtubu 99.8 1.1E-21 2.4E-26 210.3 6.0 303 13-338 32-361 (619)
5 PRK04778 septation ring format 92.1 20 0.00043 38.8 30.2 44 227-270 255-303 (569)
6 PF00038 Filament: Intermediat 90.3 19 0.00042 35.3 28.5 115 63-200 20-134 (312)
7 KOG0933 Structural maintenance 89.7 41 0.00089 38.1 26.5 78 114-200 776-853 (1174)
8 PHA02562 46 endonuclease subun 88.5 38 0.00083 36.2 25.5 47 36-84 151-197 (562)
9 TIGR00634 recN DNA repair prot 84.2 56 0.0012 35.2 17.2 126 49-202 261-394 (563)
10 PF10239 DUF2465: Protein of u 83.7 49 0.0011 32.9 15.3 82 71-184 129-210 (318)
11 KOG0250 DNA repair protein RAD 83.2 93 0.002 35.7 20.3 35 159-193 334-368 (1074)
12 TIGR03185 DNA_S_dndD DNA sulfu 77.5 1.2E+02 0.0026 33.4 30.4 41 298-338 480-520 (650)
13 PF10498 IFT57: Intra-flagella 76.8 55 0.0012 33.1 13.1 37 51-87 217-253 (359)
14 PF12128 DUF3584: Protein of u 74.6 1.9E+02 0.0041 34.4 31.2 45 222-266 765-812 (1201)
15 PF11629 Mst1_SARAH: C termina 74.0 5 0.00011 27.9 3.3 25 365-389 22-47 (49)
16 KOG0161 Myosin class II heavy 73.5 2.4E+02 0.0053 35.1 27.0 45 43-88 1045-1089(1930)
17 PF11995 DUF3490: Domain of un 73.1 65 0.0014 28.4 12.5 123 251-380 2-146 (161)
18 PF04108 APG17: Autophagy prot 72.8 1.2E+02 0.0026 31.3 32.2 114 227-364 286-403 (412)
19 PF15070 GOLGA2L5: Putative go 71.8 1.6E+02 0.0034 32.2 26.3 127 36-185 12-145 (617)
20 PF08317 Spc7: Spc7 kinetochor 69.9 1.2E+02 0.0026 30.1 22.6 87 55-141 69-161 (325)
21 KOG4674 Uncharacterized conser 68.7 2.9E+02 0.0063 34.0 37.0 216 19-263 544-773 (1822)
22 PF11995 DUF3490: Domain of un 66.8 5.1 0.00011 35.1 2.7 24 323-346 3-26 (161)
23 COG5293 Predicted ATPase [Gene 65.8 1.7E+02 0.0038 30.4 14.8 59 20-86 300-360 (591)
24 PF06160 EzrA: Septation ring 64.0 2.1E+02 0.0047 30.8 34.8 70 14-86 56-126 (560)
25 KOG4674 Uncharacterized conser 64.0 3.6E+02 0.0077 33.3 31.4 142 38-200 635-776 (1822)
26 TIGR00606 rad50 rad50. This fa 63.8 3.2E+02 0.007 32.8 30.7 34 362-395 709-742 (1311)
27 PF12128 DUF3584: Protein of u 63.5 3.2E+02 0.0069 32.6 29.9 45 156-200 765-812 (1201)
28 TIGR03007 pepcterm_ChnLen poly 63.2 2E+02 0.0044 30.2 22.2 183 50-255 200-382 (498)
29 TIGR02169 SMC_prok_A chromosom 63.1 3E+02 0.0065 32.2 27.2 38 162-199 798-835 (1164)
30 PF05557 MAD: Mitotic checkpoi 62.7 43 0.00092 37.3 9.7 36 159-194 500-535 (722)
31 COG4026 Uncharacterized protei 61.0 1.4E+02 0.0031 27.8 11.8 41 99-139 130-170 (290)
32 KOG0996 Structural maintenance 60.0 3.4E+02 0.0074 31.8 15.6 26 360-385 776-801 (1293)
33 COG3883 Uncharacterized protei 59.6 1.4E+02 0.0029 28.9 11.1 141 105-260 32-180 (265)
34 PF02403 Seryl_tRNA_N: Seryl-t 59.6 75 0.0016 25.8 8.4 75 56-142 31-105 (108)
35 KOG4643 Uncharacterized coiled 58.9 3.3E+02 0.0072 31.3 33.0 76 106-195 259-334 (1195)
36 PRK02224 chromosome segregatio 58.5 3.2E+02 0.007 31.1 31.2 24 363-386 483-506 (880)
37 PF06705 SF-assemblin: SF-asse 58.4 1.7E+02 0.0037 27.8 16.0 39 162-200 201-239 (247)
38 PF07106 TBPIP: Tat binding pr 57.1 39 0.00084 30.1 6.8 94 156-250 66-167 (169)
39 PF15066 CAGE1: Cancer-associa 56.3 1.7E+02 0.0037 30.4 11.6 75 230-318 399-473 (527)
40 KOG1666 V-SNARE [Intracellular 55.2 56 0.0012 30.3 7.4 69 48-119 19-87 (220)
41 COG1340 Uncharacterized archae 54.5 2.2E+02 0.0048 27.9 25.0 43 100-142 58-100 (294)
42 PF10146 zf-C4H2: Zinc finger- 54.3 2E+02 0.0042 27.3 15.6 103 52-203 6-109 (230)
43 TIGR02169 SMC_prok_A chromosom 54.2 4.2E+02 0.009 31.0 32.2 15 249-263 875-889 (1164)
44 PF13514 AAA_27: AAA domain 53.7 4.4E+02 0.0094 31.1 31.5 101 233-342 741-844 (1111)
45 KOG4196 bZIP transcription fac 52.9 41 0.00089 28.5 5.6 71 12-84 26-104 (135)
46 PF08614 ATG16: Autophagy prot 51.2 41 0.00088 30.8 6.0 84 101-200 71-154 (194)
47 COG2433 Uncharacterized conser 51.1 1.8E+02 0.0038 31.5 11.1 93 100-198 418-510 (652)
48 PF04849 HAP1_N: HAP1 N-termin 48.6 2.8E+02 0.0061 27.4 19.8 145 161-333 159-303 (306)
49 KOG0977 Nuclear envelope prote 48.4 3.8E+02 0.0081 28.8 29.0 176 62-259 57-232 (546)
50 KOG0964 Structural maintenance 48.3 4.8E+02 0.01 30.0 20.7 232 160-425 676-927 (1200)
51 KOG1029 Endocytic adaptor prot 47.6 4.5E+02 0.0097 29.5 17.9 68 60-142 436-503 (1118)
52 PF08606 Prp19: Prp19/Pso4-lik 47.5 1.2E+02 0.0025 23.0 6.7 63 14-77 4-66 (70)
53 KOG0996 Structural maintenance 47.4 5.4E+02 0.012 30.3 27.0 97 226-332 933-1031(1293)
54 COG1579 Zn-ribbon protein, pos 47.0 2.6E+02 0.0057 26.6 18.9 146 19-187 8-156 (239)
55 PF14712 Snapin_Pallidin: Snap 46.4 1.4E+02 0.0031 23.4 10.6 43 45-87 5-47 (92)
56 KOG0933 Structural maintenance 46.2 5.2E+02 0.011 29.8 21.4 221 60-315 754-975 (1174)
57 COG1340 Uncharacterized archae 44.9 3.1E+02 0.0068 26.9 19.4 12 299-310 236-247 (294)
58 PF10498 IFT57: Intra-flagella 44.6 3.5E+02 0.0076 27.4 12.1 91 49-143 229-319 (359)
59 PF08317 Spc7: Spc7 kinetochor 43.3 3.4E+02 0.0075 26.9 17.5 86 104-205 209-298 (325)
60 PF06705 SF-assemblin: SF-asse 42.7 3E+02 0.0065 26.0 20.3 76 171-265 163-238 (247)
61 KOG0963 Transcription factor/C 41.4 5E+02 0.011 28.2 22.3 145 102-269 64-217 (629)
62 PRK11637 AmiB activator; Provi 41.3 4.2E+02 0.0091 27.3 22.8 29 230-258 200-228 (428)
63 PRK14127 cell division protein 41.0 2.1E+02 0.0045 23.7 8.9 50 30-87 21-70 (109)
64 PF09726 Macoilin: Transmembra 40.5 4.4E+02 0.0096 29.3 12.9 123 15-146 542-664 (697)
65 PF05008 V-SNARE: Vesicle tran 40.5 52 0.0011 25.1 4.3 20 100-119 57-76 (79)
66 cd09234 V_HD-PTP_like Protein- 40.0 3.9E+02 0.0085 26.6 29.1 112 76-193 108-219 (337)
67 smart00787 Spc7 Spc7 kinetocho 39.0 4E+02 0.0087 26.4 23.0 87 55-141 64-156 (312)
68 KOG2129 Uncharacterized conser 38.9 4.5E+02 0.0099 27.0 14.3 172 163-414 159-331 (552)
69 PF04849 HAP1_N: HAP1 N-termin 38.5 4E+02 0.0087 26.3 17.5 39 223-261 264-302 (306)
70 KOG4603 TBP-1 interacting prot 38.0 3E+02 0.0065 24.7 10.8 46 156-201 73-118 (201)
71 PF10168 Nup88: Nuclear pore c 37.6 6.3E+02 0.014 28.3 25.0 37 222-258 679-715 (717)
72 PF09738 DUF2051: Double stran 37.5 4.2E+02 0.009 26.2 15.4 41 220-260 196-244 (302)
73 smart00787 Spc7 Spc7 kinetocho 34.0 4.8E+02 0.01 25.9 19.1 21 222-242 265-285 (312)
74 KOG3091 Nuclear pore complex, 33.7 5.9E+02 0.013 26.9 13.6 68 49-120 357-427 (508)
75 KOG4603 TBP-1 interacting prot 33.4 3.6E+02 0.0078 24.2 10.8 45 225-269 76-120 (201)
76 PF15066 CAGE1: Cancer-associa 33.0 6E+02 0.013 26.6 15.9 91 103-195 396-504 (527)
77 PF06818 Fez1: Fez1; InterPro 32.1 2.4E+02 0.0052 26.1 7.7 41 162-202 10-50 (202)
78 TIGR02833 spore_III_AB stage I 31.8 3.1E+02 0.0067 24.5 8.4 92 175-281 20-116 (170)
79 COG4026 Uncharacterized protei 31.3 4.5E+02 0.0097 24.7 11.1 44 228-271 170-213 (290)
80 PF12325 TMF_TATA_bd: TATA ele 31.3 3.2E+02 0.0069 23.0 11.1 30 51-80 34-63 (120)
81 cd08915 V_Alix_like Protein-in 31.1 5.4E+02 0.012 25.6 29.5 120 68-192 98-220 (342)
82 PF12302 DUF3629: Protein of u 31.1 1.1E+02 0.0023 27.7 5.1 64 327-391 50-113 (253)
83 PRK05431 seryl-tRNA synthetase 30.7 3.4E+02 0.0074 28.1 9.7 80 55-146 29-108 (425)
84 PRK08307 stage III sporulation 30.5 3.1E+02 0.0068 24.5 8.2 92 175-281 21-117 (171)
85 TIGR02168 SMC_prok_B chromosom 30.2 9.3E+02 0.02 28.0 33.3 27 235-261 866-892 (1179)
86 PRK11637 AmiB activator; Provi 29.9 6.3E+02 0.014 26.0 20.7 41 101-141 44-84 (428)
87 KOG3341 RNA polymerase II tran 29.7 1.6E+02 0.0034 27.5 6.0 48 100-147 32-79 (249)
88 PRK09039 hypothetical protein; 29.5 5.9E+02 0.013 25.5 19.7 131 100-240 112-250 (343)
89 COG4396 Mu-like prophage host- 28.8 3.5E+02 0.0077 23.3 7.5 59 60-139 17-75 (170)
90 cd09234 V_HD-PTP_like Protein- 28.6 6E+02 0.013 25.3 32.9 194 49-259 8-219 (337)
91 PF10243 MIP-T3: Microtubule-b 28.5 19 0.00041 38.6 0.0 36 158-193 491-526 (539)
92 KOG4360 Uncharacterized coiled 28.5 6.2E+02 0.013 26.9 10.6 172 161-344 204-388 (596)
93 PLN02678 seryl-tRNA synthetase 28.3 3.7E+02 0.0081 28.1 9.4 80 55-146 34-113 (448)
94 PHA03418 hypothetical E4 prote 28.3 1.4E+02 0.003 27.9 5.5 40 227-269 191-230 (230)
95 PF07888 CALCOCO1: Calcium bin 28.1 7.8E+02 0.017 26.5 17.3 21 385-405 447-467 (546)
96 PF04799 Fzo_mitofusin: fzo-li 27.5 2.9E+02 0.0062 24.9 7.2 65 43-119 102-166 (171)
97 TIGR03185 DNA_S_dndD DNA sulfu 27.4 8.5E+02 0.018 26.7 32.8 207 100-341 205-419 (650)
98 PF14643 DUF4455: Domain of un 27.0 7.6E+02 0.016 26.0 21.5 285 59-382 2-295 (473)
99 PF09730 BicD: Microtubule-ass 26.2 9.5E+02 0.021 26.8 14.0 80 296-386 581-664 (717)
100 PF12004 DUF3498: Domain of un 26.0 22 0.00049 37.4 0.0 76 365-444 372-452 (495)
101 PF07083 DUF1351: Protein of u 25.6 5.5E+02 0.012 23.9 12.8 80 124-207 107-189 (215)
102 PRK09039 hypothetical protein; 25.6 6.9E+02 0.015 25.0 18.0 163 62-268 47-210 (343)
103 PF04949 Transcrip_act: Transc 25.3 4.6E+02 0.01 22.9 8.4 23 111-133 119-141 (159)
104 PF11944 DUF3461: Protein of u 25.1 2.3E+02 0.005 23.9 5.7 50 13-63 73-122 (125)
105 PF07106 TBPIP: Tat binding pr 24.7 4.8E+02 0.011 23.0 12.5 27 159-185 142-168 (169)
106 PHA03419 E4 protein; Provision 24.6 1.7E+02 0.0037 26.7 5.3 42 225-269 159-200 (200)
107 KOG4360 Uncharacterized coiled 24.5 8.7E+02 0.019 25.8 15.2 37 297-334 267-303 (596)
108 PF07889 DUF1664: Protein of u 24.4 4.4E+02 0.0096 22.4 8.7 69 12-80 41-115 (126)
109 PF14389 Lzipper-MIP1: Leucine 24.0 3.6E+02 0.0079 21.2 9.3 68 63-141 10-84 (88)
110 COG4942 Membrane-bound metallo 23.5 8.4E+02 0.018 25.3 21.9 180 39-259 38-220 (420)
111 PF10212 TTKRSYEDQ: Predicted 23.1 6.1E+02 0.013 27.0 9.7 78 42-131 437-514 (518)
112 PF07888 CALCOCO1: Calcium bin 22.6 9.8E+02 0.021 25.7 19.1 46 226-271 415-460 (546)
113 KOG4398 Predicted coiled-coil 22.4 5.9E+02 0.013 24.7 8.6 20 303-322 70-89 (359)
114 PF05557 MAD: Mitotic checkpoi 22.3 1.1E+03 0.024 26.2 14.6 43 159-201 603-646 (722)
115 PF07216 LcrG: LcrG protein; 22.3 3E+02 0.0064 21.9 5.5 23 255-277 25-47 (93)
116 PRK02793 phi X174 lysis protei 22.2 3.5E+02 0.0076 20.4 8.0 47 39-86 8-54 (72)
117 PF04102 SlyX: SlyX; InterPro 22.2 3.4E+02 0.0073 20.2 7.4 38 49-86 13-50 (69)
118 TIGR02231 conserved hypothetic 21.9 8.9E+02 0.019 25.7 11.2 88 54-142 78-169 (525)
119 KOG0972 Huntingtin interacting 21.8 7.7E+02 0.017 24.2 9.8 33 52-84 225-257 (384)
120 TIGR00414 serS seryl-tRNA synt 21.7 6.3E+02 0.014 26.1 9.7 81 54-146 30-111 (418)
121 PRK13677 hypothetical protein; 21.4 3.3E+02 0.0072 22.8 5.9 50 12-62 72-121 (125)
122 cd00890 Prefoldin Prefoldin is 21.2 4.7E+02 0.01 21.5 9.0 36 227-262 86-121 (129)
123 PF10239 DUF2465: Protein of u 21.2 8.2E+02 0.018 24.3 14.5 145 67-252 57-212 (318)
124 PF11593 Med3: Mediator comple 21.2 2.2E+02 0.0047 28.8 5.7 83 299-401 9-91 (379)
125 PF04912 Dynamitin: Dynamitin 20.9 8.9E+02 0.019 24.6 22.3 24 180-203 206-229 (388)
126 PF13949 ALIX_LYPXL_bnd: ALIX 20.9 7.5E+02 0.016 23.7 28.4 130 54-190 36-169 (296)
127 PF10168 Nup88: Nuclear pore c 20.8 1.2E+03 0.026 26.1 21.0 32 158-189 681-712 (717)
128 COG1196 Smc Chromosome segrega 20.7 1.4E+03 0.031 27.0 34.3 10 382-391 994-1003(1163)
129 cd09237 V_ScBro1_like Protein- 20.1 8.8E+02 0.019 24.3 32.6 264 21-334 31-354 (356)
130 PRK02119 hypothetical protein; 20.0 4E+02 0.0087 20.2 7.2 45 40-85 10-54 (73)
No 1
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=100.00 E-value=5.1e-78 Score=622.93 Aligned_cols=436 Identities=56% Similarity=0.819 Sum_probs=402.5
Q ss_pred CCCCCCCCCCCccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013174 1 MAVTDTENPLLGETTCSSLLHKLQEIWDEVGENDEERDKMLLQIEKECLDVYKRKVEQAAKSRAQLLQALSDAKIELASL 80 (448)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~l~~L~~IWdeiG~~~~er~~~~~~l~~~~~~~~~~~v~e~~~~k~~l~~~I~~~~~el~~L 80 (448)
|+.++...+....++|++++.+|+.||++||+++++|++++..|++||.++|+.+|+++...+++|.++|++++++++.|
T Consensus 1 ~~~~~~~~~~~~~~t~~~~~~eL~~IW~~igE~~~e~d~~l~~le~e~~~~y~~kve~a~~~~~~L~~~ia~~eael~~l 80 (660)
T KOG4302|consen 1 TVMMDSEVSLQIEATCGNLLNELQKIWDEIGESETERDKKLLRLEQECLEIYKRKVEEASESKARLLQEIAVIEAELNDL 80 (660)
T ss_pred CCccccchhhhhHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555666777899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCcCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCCCCC
Q 013174 81 LSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLSLGDQAPSVDESDLT 160 (448)
Q Consensus 81 ~~eLg~~~~~~~~~~~~~~~sL~~~l~~l~~~le~L~~~k~~R~~e~~~l~~~i~~l~~~L~~~~~~~~~~~~~~~~~lS 160 (448)
|++||++++.. ..+++..+||.+++..+.+.++.|+++|++|+.+|.++..+|+.||.+||++.. ...++.++..|+|
T Consensus 81 ~s~l~~~~~~~-~~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~~~-~~~~~~~D~~dls 158 (660)
T KOG4302|consen 81 CSALGEPSIIG-EISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGPED-LPSFLIADESDLS 158 (660)
T ss_pred HHHhCCccccc-ccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-CCcccccCccccc
Confidence 99999999865 235567889999999999999999999999999999999999999999999921 1114456788999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccchhhhccCCCCCCCCCccCCCCHHHHHHHHHHHHHH
Q 013174 161 LKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDLCGVLGMDFFSTVTEVHPSLNDSTGVQSKSISNDTLARLAKTVLAL 240 (448)
Q Consensus 161 ~~~L~~l~~~l~~L~~ek~~R~~~~~~l~~~I~~L~~~L~~~~~~~~~~i~~sl~~~~~~~~~~ls~~~l~~L~~~~~~L 240 (448)
++.|+.|+.+|.+|+++|..|+++|.+++.+|+.||.+||++|...+..+||++.+..+..++++|++++++|...+..|
T Consensus 159 l~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~Lg~~~~~~vt~~~~sL~~~~~~~~~~is~etl~~L~~~v~~l 238 (660)
T KOG4302|consen 159 LEKLEELREHLNELQKEKSDRLEKVLELKEEIKSLCSVLGLDFSMTVTDVEPSLVDHDGEQSRSISDETLDRLDKMVKKL 238 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhhhhhhhccCcccccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888888999988776678999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHhHHH
Q 013174 241 KEDKKQRLHKLQELATQLIDLWNLMDTPSEERRLFDHVTCNISAYVDGVTVPGALALDLIEQAEVEVERLDQLKASRMKE 320 (448)
Q Consensus 241 ~~~K~~r~~~~~~l~~~l~~LW~~L~~~~ee~~~F~~~~~~i~~s~~~~~~~~~ls~~~i~~l~~El~RL~~lK~~~ik~ 320 (448)
+++|.+|++++++|+.+|..||++|++|++||..|..+. +++++.++++|.++|..++.||.||+++|+++||+
T Consensus 239 ~~~k~qr~~kl~~l~~~~~~LWn~l~ts~Ee~~~f~~~t------~~e~t~~~~ls~d~I~~ve~Ev~Rl~qlK~s~mKe 312 (660)
T KOG4302|consen 239 KEEKKQRLQKLQDLRTKLLELWNLLDTSDEERQRFVHVT------ESEATEPNSLSLDIIEQVEKEVDRLEQLKASNMKE 312 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHcccc------HHHhhccccccHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 999999999999999999999999999999999998763 68899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhcCCCCChHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhHHHHH
Q 013174 321 IAFKRQGELEEIFARAHIEIDPVAAREKIMTLIDSGNVEPAELLADMDNQIAKAKEEAHSRKEILDKVEKWMSACEEESW 400 (448)
Q Consensus 321 li~~~r~el~elWd~~~~~~e~~~~~~~~~~~~~s~~~~~e~lL~~~E~ei~~lk~~~~~~k~il~~v~~~~~l~~e~~~ 400 (448)
||.++|.+|++||+.+||+.+..........++++|..+..++|+.++.+|.++|+++.+||+|+++|++|.++|+++.|
T Consensus 313 li~k~r~Eleel~~~~h~s~~~e~~~~f~~~~~ds~~~d~~ell~~~d~~i~k~keea~srk~il~~ve~W~sa~EeE~~ 392 (660)
T KOG4302|consen 313 LIEKKRSELEELWRLLHYSEENESRRRFITYLIDSGTEDVLELLENIDNLIKKYKEEALSRKEILERVEKWESACEEESW 392 (660)
T ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 99999999999999999999432333334556688888888888888889999999999999999999999999999999
Q ss_pred HHHhcCCchhhhccCCchhhhHHHHHHhHHhcccCCCcccccCC
Q 013174 401 LEDYNRDENRYNASRGAHLNLKRAEKARILVNKIPGMPRIPEQP 444 (448)
Q Consensus 401 le~~~~D~~R~~~~Rg~~~~Ll~eEk~Rk~i~klP~~~e~L~~~ 444 (448)
|++|++|.|||+++||||+.|+||||+|++|+|+|+|++.|...
T Consensus 393 lee~n~D~nR~~~~Rg~h~lLkreekar~~vsKlP~~~~~L~~k 436 (660)
T KOG4302|consen 393 LEEYNRDSNRYNAGRGAHLLLKREEKARKLVSKLPKMVEALTAK 436 (660)
T ss_pred HhcccchhhhHhccccchhHHHHHHHHHHHhhhCchhhHHHHHH
Confidence 99999999999977999999999999999999999999988654
No 2
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=100.00 E-value=1.7e-62 Score=524.27 Aligned_cols=384 Identities=37% Similarity=0.538 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----------CCcCCC----CCCCCCCCcH
Q 013174 38 DKMLLQIEKECLDVYKRKVEQAAKSRAQLLQALSDAKIELASLLSALGE-----------KSIAGL----GIPEKTSGTI 102 (448)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~v~e~~~~k~~l~~~I~~~~~el~~L~~eLg~-----------~~~~~~----~~~~~~~~sL 102 (448)
+.++..++.+|+++|..++++++..++.|.+.|+.+.+++..|++++|. .|+... ......++||
T Consensus 3 ~~~~~~~~~~~~~~~~~~~ee~~~~~~~l~~~i~~~~~E~~~L~~~lg~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~L 82 (619)
T PF03999_consen 3 DLMVVYLEIECLNVYMIKVEEANELKARLLQSIADAEAELADLSSELGEEQEHLCRELEKEPLSLEEEKDILQLEKSMPL 82 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHhcccccccccccchhhhcccccc
Confidence 4567889999999999999999999999999999999999999444443 332210 0112346799
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHH
Q 013174 103 KEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLSLGDQAPSVDESDL-TLKKLDEYQAQLQELQKEKSDR 181 (448)
Q Consensus 103 ~~~l~~l~~~le~L~~~k~~R~~e~~~l~~~i~~l~~~L~~~~~~~~~~~~~~~~~l-S~~~L~~l~~~l~~L~~ek~~R 181 (448)
.+++..|+++++.|++.+.+|+.+|.+++.+++.||..||..+.... .+.++..++ |.++|+.|+.+++.|+++++.|
T Consensus 83 ~~~~~~L~~~le~l~~~~~eR~~~~~~L~~~~~~l~~~Lg~~~~~~~-~~~~~~~~l~S~~~l~~l~~~l~~L~~e~~~R 161 (619)
T PF03999_consen 83 KEQLPKLRPQLEELRKEKEERMQEFKELQEQLEQLCEELGELPLCLN-PFDIDESDLPSLEELEELRQHLQRLQEEKERR 161 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCc-cccCCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988765432 233444444 5899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCcc-chhhhccCCCCCCCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013174 182 LHKVLEFVSTVHDLCGVLGMDFF-STVTEVHPSLNDSTGVQSKSISNDTLARLAKTVLALKEDKKQRLHKLQELATQLID 260 (448)
Q Consensus 182 ~~~~~~l~~~I~~L~~~L~~~~~-~~~~~i~~sl~~~~~~~~~~ls~~~l~~L~~~~~~L~~~K~~r~~~~~~l~~~l~~ 260 (448)
+.+|.+++..|..+|.+||++|. ..+......+. .++..++||+++|++|...++.|+.+|.+|.+++.+|+..|..
T Consensus 162 ~~~v~~l~~~I~~l~~~L~~~~~~~~~e~~l~~~~--~~~~~~~Ls~~~l~~L~~~~~~L~~~k~~r~~~~~~l~~~i~~ 239 (619)
T PF03999_consen 162 LEEVRELREEIISLMEELGIDPERTSFEKDLLSYS--EDEESFCLSDENLEKLQELLQELEEEKEEREEKLQELREKIEE 239 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhCCCcccccchhhccccc--cccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999986 43311111111 2456899999999999999999999999999999999999999
Q ss_pred HHHhcCCCHHHHHHHHHHhccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCCCC
Q 013174 261 LWNLMDTPSEERRLFDHVTCNISAYVDGVTVPGALALDLIEQAEVEVERLDQLKASRMKEIAFKRQGELEEIFARAHIEI 340 (448)
Q Consensus 261 LW~~L~~~~ee~~~F~~~~~~i~~s~~~~~~~~~ls~~~i~~l~~El~RL~~lK~~~ik~li~~~r~el~elWd~~~~~~ 340 (448)
||++|++|++|++.|...+ +++|.++|+++++||+||+++|+++|++||.++|.+|.+|||.|||++
T Consensus 240 LW~~L~~~~ee~~~F~~~~-------------~~ls~~~i~~l~~El~RL~~lK~~~lk~~I~~~R~ei~elWd~~~~s~ 306 (619)
T PF03999_consen 240 LWNRLDVPEEEREAFLEEN-------------SGLSLDTIEALEEELERLEELKKQNLKEFIEKKRQEIEELWDKCHYSE 306 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhCCCHHHHHHHhhcc-------------CcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCH
Confidence 9999999999999997644 568899999999999999999999999999999999999999999999
Q ss_pred chHHHHHHhhhhhcCCCCChHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhHHHHHHHHhcCCchhhhccCCchhh
Q 013174 341 DPVAAREKIMTLIDSGNVEPAELLADMDNQIAKAKEEAHSRKEILDKVEKWMSACEEESWLEDYNRDENRYNASRGAHLN 420 (448)
Q Consensus 341 e~~~~~~~~~~~~~s~~~~~e~lL~~~E~ei~~lk~~~~~~k~il~~v~~~~~l~~e~~~le~~~~D~~R~~~~Rg~~~~ 420 (448)
++|..|. +++. +.++|++|+.||.||++|+++|++++|||++|++|+++|+++.|||++++|||||+ |||| .
T Consensus 307 eer~~F~---~~~~--d~~~E~lL~~hE~Ei~~Lk~~~~~~k~Il~~v~k~~~l~~~~~~Le~~~~D~~Rl~-~RGg--~ 378 (619)
T PF03999_consen 307 EERQAFT---PFYI--DSYTEELLELHEEEIERLKEEYESRKPILELVEKWESLWEEMEELEESSKDPSRLN-NRGG--H 378 (619)
T ss_dssp ---------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCGG---------
T ss_pred HHHHHHH---HHhc--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhc-cccc--H
Confidence 9988754 3343 23889999999999999999999999999999999999999999999999999999 9999 5
Q ss_pred hHHHHHHhHHhcc-cCCCcccccCCc
Q 013174 421 LKRAEKARILVNK-IPGMPRIPEQPC 445 (448)
Q Consensus 421 Ll~eEk~Rk~i~k-lP~~~e~L~~~~ 445 (448)
||+|||+||+|+| ||+|+++|+..+
T Consensus 379 LLkEEk~rk~i~k~lPkle~~L~~~l 404 (619)
T PF03999_consen 379 LLKEEKERKRIQKKLPKLEEELKKKL 404 (619)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 8999999999987 999999998753
No 3
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=99.90 E-value=4.9e-21 Score=199.57 Aligned_cols=318 Identities=17% Similarity=0.244 Sum_probs=259.8
Q ss_pred HHHHHHHHhCCCCcCCCCCCCCCCCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCC
Q 013174 76 ELASLLSALGEKSIAGLGIPEKTSGTIK-EQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLSLGDQAPSV 154 (448)
Q Consensus 76 el~~L~~eLg~~~~~~~~~~~~~~~sL~-~~l~~l~~~le~L~~~k~~R~~e~~~l~~~i~~l~~~L~~~~~~~~~~~~~ 154 (448)
+++.||+++|.+.... +..-.-|. .....|+..+++....++.-++++..+.+++..||..||..+..+. .+.
T Consensus 22 eL~~IW~~igE~~~e~----d~~l~~le~e~~~~y~~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~--~~~ 95 (660)
T KOG4302|consen 22 ELQKIWDEIGESETER----DKKLLRLEQECLEIYKRKVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGE--ISD 95 (660)
T ss_pred HHHHHHHHhCccHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccc--ccc
Confidence 3999999999997643 10011111 2356788999999999999999999999999999999999886543 011
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccchhhhccCCCCCCCCCccCCCCHHHHHHHH
Q 013174 155 DESDLTLKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDLCGVLGMDFFSTVTEVHPSLNDSTGVQSKSISNDTLARLA 234 (448)
Q Consensus 155 ~~~~lS~~~L~~l~~~l~~L~~ek~~R~~~~~~l~~~I~~L~~~L~~~~~~~~~~i~~sl~~~~~~~~~~ls~~~l~~L~ 234 (448)
....+-.+.+..+...++.|.+.|++|..+|.++..+|..||.+||..+.. +.. ...+..++|+..++.|+
T Consensus 96 k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~~~~------~~~---~~~D~~dlsl~kLeelr 166 (660)
T KOG4302|consen 96 KIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGPEDL------PSF---LIADESDLSLEKLEELR 166 (660)
T ss_pred ccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccC------Ccc---cccCcccccHHHHHHHH
Confidence 122344699999999999999999999999999999999999999977211 111 12356789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhccccccccCCC--CCCCchHHHHHHHHHHHHHHHH
Q 013174 235 KTVLALKEDKKQRLHKLQELATQLIDLWNLMDTPSEERRLFDHVTCNISAYVDGVT--VPGALALDLIEQAEVEVERLDQ 312 (448)
Q Consensus 235 ~~~~~L~~~K~~r~~~~~~l~~~l~~LW~~L~~~~ee~~~F~~~~~~i~~s~~~~~--~~~~ls~~~i~~l~~El~RL~~ 312 (448)
..+..|+++|..|.+++..+...|..||..||++ |......+++|..+.. .+.++|.+||+.+..-|..|.+
T Consensus 167 ~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~Lg~~------~~~~vt~~~~sL~~~~~~~~~~is~etl~~L~~~v~~l~~ 240 (660)
T KOG4302|consen 167 EHLNELQKEKSDRLEKVLELKEEIKSLCSVLGLD------FSMTVTDVEPSLVDHDGEQSRSISDETLDRLDKMVKKLKE 240 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC------cccchhhhhhhhhhccCcccccCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998 6655556666665544 3678999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHh-----h-------------------------------------
Q 013174 313 LKASRMKEIAFKRQGELEEIFARAHIEIDPVAAREKI-----M------------------------------------- 350 (448)
Q Consensus 313 lK~~~ik~li~~~r~el~elWd~~~~~~e~~~~~~~~-----~------------------------------------- 350 (448)
.|.+++.++ ...+..+.+||++|.+|++++..|.+. +
T Consensus 241 ~k~qr~~kl-~~l~~~~~~LWn~l~ts~Ee~~~f~~~t~~e~t~~~~ls~d~I~~ve~Ev~Rl~qlK~s~mKeli~k~r~ 319 (660)
T KOG4302|consen 241 EKKQRLQKL-QDLRTKLLELWNLLDTSDEERQRFVHVTESEATEPNSLSLDIIEQVEKEVDRLEQLKASNMKELIEKKRS 319 (660)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHhccCCHHHHHHHccccHHHhhccccccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 999999885 569999999999999999999888431 1
Q ss_pred -------hhhcC-------------CCCChHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhHHHHHHHHhcCCchh
Q 013174 351 -------TLIDS-------------GNVEPAELLADMDNQIAKAKEEAHSRKEILDKVEKWMSACEEESWLEDYNRDENR 410 (448)
Q Consensus 351 -------~~~~s-------------~~~~~e~lL~~~E~ei~~lk~~~~~~k~il~~v~~~~~l~~e~~~le~~~~D~~R 410 (448)
..+.+ .+.+++++++.|+. |..+..+|...+.+++.|-.|..-|......|.+.-|+||
T Consensus 320 Eleel~~~~h~s~~~e~~~~f~~~~~ds~~~d~~ell~~-~d~~i~k~keea~srk~il~~ve~W~sa~EeE~~lee~n~ 398 (660)
T KOG4302|consen 320 ELEELWRLLHYSEENESRRRFITYLIDSGTEDVLELLEN-IDNLIKKYKEEALSRKEILERVEKWESACEEESWLEEYNR 398 (660)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHhccCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccc
Confidence 01111 13568888999988 9999999999999999999999999999999999999999
Q ss_pred hhccCCc
Q 013174 411 YNASRGA 417 (448)
Q Consensus 411 ~~~~Rg~ 417 (448)
-. ||=.
T Consensus 399 D~-nR~~ 404 (660)
T KOG4302|consen 399 DS-NRYN 404 (660)
T ss_pred hh-hhHh
Confidence 88 7743
No 4
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=99.84 E-value=1.1e-21 Score=210.26 Aligned_cols=303 Identities=23% Similarity=0.303 Sum_probs=19.4
Q ss_pred cchHHHHHHHHHHHHHHhCCChHHHHHH-------------HHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013174 13 ETTCSSLLHKLQEIWDEVGENDEERDKM-------------LLQIEK-----ECLDVYKRKVEQAAKSRAQLLQALSDAK 74 (448)
Q Consensus 13 ~~~~~~~l~~L~~IWdeiG~~~~er~~~-------------~~~l~~-----~~~~~~~~~v~e~~~~k~~l~~~I~~~~ 74 (448)
....+.+-.++..|+.++|+....-... +.+..+ .+...+...++++...+..+..+|..++
T Consensus 32 ~~~i~~~~~E~~~L~~~lg~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~L~~~~~~L~~~le~l~~~~~eR~~~~~~L~ 111 (619)
T PF03999_consen 32 LQSIADAEAELADLSSELGEEQEHLCRELEKEPLSLEEEKDILQLEKSMPLKEQLPKLRPQLEELRKEKEERMQEFKELQ 111 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhhhhcchhHHHHHHhcccccccccccchhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556778888877777654422111 111111 2344577899999999999999999999
Q ss_pred HHHHHHHHHhCCCCcCCC-CCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCC-CCCC--
Q 013174 75 IELASLLSALGEKSIAGL-GIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLS-LGDQ-- 150 (448)
Q Consensus 75 ~el~~L~~eLg~~~~~~~-~~~~~~~~sL~~~l~~l~~~le~L~~~k~~R~~e~~~l~~~i~~l~~~L~~~~~-~~~~-- 150 (448)
.++..||.+||.++.... ...+..++|-.+++..|+.+++.|+++++.|+.+|..+...|..+|.+||.+|. ....
T Consensus 112 ~~~~~l~~~Lg~~~~~~~~~~~~~~~l~S~~~l~~l~~~l~~L~~e~~~R~~~v~~l~~~I~~l~~~L~~~~~~~~~e~~ 191 (619)
T PF03999_consen 112 EQLEQLCEELGELPLCLNPFDIDESDLPSLEELEELRQHLQRLQEEKERRLEEVRELREEIISLMEELGIDPERTSFEKD 191 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhccccccccCCccccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccchhh
Confidence 999999999998765320 012334556448999999999999999999999999999999999999999885 2221
Q ss_pred CC----CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccchhhhccCCCCCCCCCccCCCC
Q 013174 151 AP----SVDESDLTLKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDLCGVLGMDFFSTVTEVHPSLNDSTGVQSKSIS 226 (448)
Q Consensus 151 ~~----~~~~~~lS~~~L~~l~~~l~~L~~ek~~R~~~~~~l~~~I~~L~~~L~~~~~~~~~~i~~sl~~~~~~~~~~ls 226 (448)
.. .....++|.+.|+.|...+..|+.+|..|..++..+...|..||+.|+++.+..- .. ...+.++|
T Consensus 192 l~~~~~~~~~~~Ls~~~l~~L~~~~~~L~~~k~~r~~~~~~l~~~i~~LW~~L~~~~ee~~--~F-------~~~~~~ls 262 (619)
T PF03999_consen 192 LLSYSEDEESFCLSDENLEKLQELLQELEEEKEEREEKLQELREKIEELWNRLDVPEEERE--AF-------LEENSGLS 262 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH--HH-------hhccCcch
Confidence 11 1234689999999999999999999999999999999999999999998765421 01 12356799
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHhccccccccCCCCCCCchHHHHHHHHH
Q 013174 227 NDTLARLAKTVLALKEDKKQRLHKLQE-LATQLIDLWNLMDTPSEERRLFDHVTCNISAYVDGVTVPGALALDLIEQAEV 305 (448)
Q Consensus 227 ~~~l~~L~~~~~~L~~~K~~r~~~~~~-l~~~l~~LW~~L~~~~ee~~~F~~~~~~i~~s~~~~~~~~~ls~~~i~~l~~ 305 (448)
.++|+.++.++++|+.+|.++++.+.. .+.+|..||+.|.+++++|..|...+.. ..+.++++.++.
T Consensus 263 ~~~i~~l~~El~RL~~lK~~~lk~~I~~~R~ei~elWd~~~~s~eer~~F~~~~~d------------~~~E~lL~~hE~ 330 (619)
T PF03999_consen 263 LDTIEALEEELERLEELKKQNLKEFIEKKRQEIEELWDKCHYSEEERQAFTPFYID------------SYTEELLELHEE 330 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcc------------cchHHHHHHHHH
Confidence 999999999999999999999999977 9999999999999999999999887642 356889999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCC
Q 013174 306 EVERLDQLKASRMKEIAFKRQGELEEIFARAHI 338 (448)
Q Consensus 306 El~RL~~lK~~~ik~li~~~r~el~elWd~~~~ 338 (448)
||.||++....+ +. |...-.+...+|+.+..
T Consensus 331 Ei~~Lk~~~~~~-k~-Il~~v~k~~~l~~~~~~ 361 (619)
T PF03999_consen 331 EIERLKEEYESR-KP-ILELVEKWESLWEEMEE 361 (619)
T ss_dssp ----HHHHHHHH-HH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HH-HHHHHHHHHHHHHHHHH
Confidence 999999999885 33 34467778888887644
No 5
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=92.15 E-value=20 Score=38.75 Aligned_cols=44 Identities=11% Similarity=0.287 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHH-HHHHHHHHHHHHhcCCCHH
Q 013174 227 NDTLARLAKTVLA----LKEDKKQRLHKL-QELATQLIDLWNLMDTPSE 270 (448)
Q Consensus 227 ~~~l~~L~~~~~~----L~~~K~~r~~~~-~~l~~~l~~LW~~L~~~~e 270 (448)
+..|..|+..+.. +....-...... ..+...|..|++.|.-...
T Consensus 255 ~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~ 303 (569)
T PRK04778 255 EKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVK 303 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666 555554554444 4499999999999865433
No 6
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=90.34 E-value=19 Score=35.34 Aligned_cols=115 Identities=16% Similarity=0.216 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhc
Q 013174 63 RAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIA 142 (448)
Q Consensus 63 k~~l~~~I~~~~~el~~L~~eLg~~~~~~~~~~~~~~~sL~~~l~~l~~~le~L~~~k~~R~~e~~~l~~~i~~l~~~L~ 142 (448)
...|.++...+..+|..+...-+.++... .......+..++..++.+..+++.-.-++..+...+..+-..+.
T Consensus 20 Vr~LE~~N~~Le~~i~~~~~~~~~~~~~~-------~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e 92 (312)
T PF00038_consen 20 VRFLEQENKRLESEIEELREKKGEEVSRI-------KEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYE 92 (312)
T ss_dssp HHHHHHHHHHHHHHHHH---------HHH-------HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHhcccccCccc-------ccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHH
Confidence 33444555555555554444433322110 12233455666666666666666666666666666665543331
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 013174 143 GNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDLCGVLG 200 (448)
Q Consensus 143 ~~~~~~~~~~~~~~~~lS~~~L~~l~~~l~~L~~ek~~R~~~~~~l~~~I~~L~~~L~ 200 (448)
.. ......+...+..+++..+.=...-..+-+.|..|..+|.
T Consensus 93 ~e----------------~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~ 134 (312)
T PF00038_consen 93 EE----------------LAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELE 134 (312)
T ss_dssp HH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH----------------HHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHH
Confidence 11 2333344444444444444444444445555555555443
No 7
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=89.70 E-value=41 Score=38.12 Aligned_cols=78 Identities=17% Similarity=0.221 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013174 114 EQLWKQKEERVKEFSDVQSQIQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVH 193 (448)
Q Consensus 114 e~L~~~k~~R~~e~~~l~~~i~~l~~~L~~~~~~~~~~~~~~~~~lS~~~L~~l~~~l~~L~~ek~~R~~~~~~l~~~I~ 193 (448)
..+..-++.|-..+.++...|..+-..+....... -=.....+.|.-..+.|+.+...-...+..+...|.
T Consensus 776 ~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~---------ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~ 846 (1174)
T KOG0933|consen 776 KKMKDAKANRERRLKDLEKEIKTAKQRAEESSKEL---------EKRENEYERLQLEHEELEKEISSLKQQLEQLEKQIS 846 (1174)
T ss_pred HHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566666666666666655554332111 012344455666666666666666666666666666
Q ss_pred HHHHHhC
Q 013174 194 DLCGVLG 200 (448)
Q Consensus 194 ~L~~~L~ 200 (448)
.|-.+++
T Consensus 847 ~l~~e~~ 853 (1174)
T KOG0933|consen 847 SLKSELG 853 (1174)
T ss_pred HHHHHHH
Confidence 6655555
No 8
>PHA02562 46 endonuclease subunit; Provisional
Probab=88.50 E-value=38 Score=36.20 Aligned_cols=47 Identities=11% Similarity=0.198 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013174 36 ERDKMLLQIEKECLDVYKRKVEQAAKSRAQLLQALSDAKIELASLLSAL 84 (448)
Q Consensus 36 er~~~~~~l~~~~~~~~~~~v~e~~~~k~~l~~~I~~~~~el~~L~~eL 84 (448)
+|...+..+.. .+.|..+-...........+.++.+..++..+-..+
T Consensus 151 er~~il~~l~~--~~~~~~~~~~~k~~~~e~~~~i~~l~~~i~~l~~~i 197 (562)
T PHA02562 151 ARRKLVEDLLD--ISVLSEMDKLNKDKIRELNQQIQTLDMKIDHIQQQI 197 (562)
T ss_pred hHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45444444322 234444444444444455555555555555555554
No 9
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=84.20 E-value=56 Score=35.20 Aligned_cols=126 Identities=20% Similarity=0.224 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013174 49 LDVYKRKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFS 128 (448)
Q Consensus 49 ~~~~~~~v~e~~~~k~~l~~~I~~~~~el~~L~~eLg~~~~~~~~~~~~~~~sL~~~l~~l~~~le~L~~~k~~R~~e~~ 128 (448)
..++++.+.+...........+.++..++....+.+...| ..+..++.++..++..+..--..+.
T Consensus 261 ~~~~d~~~~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp---------------~~L~ele~RL~~l~~LkrKyg~s~e 325 (563)
T TIGR00634 261 ASVIDGSLRELAEQVGNALTEVEEATRELQNYLDELEFDP---------------ERLNEIEERLAQIKRLKRKYGASVE 325 (563)
T ss_pred HHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 3336666666666666777777777777777777664333 2344455455444444333334555
Q ss_pred HHHHHHHHHHhHhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHhC
Q 013174 129 DVQSQIQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKS--------DRLHKVLEFVSTVHDLCGVLG 200 (448)
Q Consensus 129 ~l~~~i~~l~~~L~~~~~~~~~~~~~~~~~lS~~~L~~l~~~l~~L~~ek~--------~R~~~~~~l~~~I~~L~~~L~ 200 (448)
++......+..+|..... +...++.++..+..+++++. .|......+...+...+..||
T Consensus 326 ~l~~~~~~l~~eL~~l~~-------------~~~~le~L~~el~~l~~~l~~~a~~Ls~~R~~~a~~l~~~v~~~l~~L~ 392 (563)
T TIGR00634 326 EVLEYAEKIKEELDQLDD-------------SDESLEALEEEVDKLEEELDKAAVALSLIRRKAAERLAKRVEQELKALA 392 (563)
T ss_pred HHHHHHHHHHHHHHHHhC-------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 555555555555543221 23445555555555555443 567777888899999999999
Q ss_pred CC
Q 013174 201 MD 202 (448)
Q Consensus 201 ~~ 202 (448)
++
T Consensus 393 m~ 394 (563)
T TIGR00634 393 ME 394 (563)
T ss_pred CC
Confidence 85
No 10
>PF10239 DUF2465: Protein of unknown function (DUF2465); InterPro: IPR018797 FAM98A, B and C are glycine-rich proteins found from worms to humans whose function is unknown.
Probab=83.68 E-value=49 Score=32.89 Aligned_cols=82 Identities=23% Similarity=0.286 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHhCCCCcCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCCCC
Q 013174 71 SDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLSLGDQ 150 (448)
Q Consensus 71 ~~~~~el~~L~~eLg~~~~~~~~~~~~~~~sL~~~l~~l~~~le~L~~~k~~R~~e~~~l~~~i~~l~~~L~~~~~~~~~ 150 (448)
.....++..+|..||.+..+. +.+..+.+..+..+++++-.. ++... .+
T Consensus 129 s~~~~~l~~i~~~L~l~~p~~-------~i~~~~lf~~i~~ki~~~L~~---------------------lp~~~-~~-- 177 (318)
T PF10239_consen 129 SEVAQELKAICQALGLPKPPP-------NITASQLFSKIEAKIEELLSK---------------------LPPGH-MG-- 177 (318)
T ss_pred cHHHHHHHHHHHHhCCCCCCC-------CCCHHHHHHHHHHHHHHHHHh---------------------cCccc-cC--
Confidence 445668999999999987533 456666666666666544332 22111 11
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 013174 151 APSVDESDLTLKKLDEYQAQLQELQKEKSDRLHK 184 (448)
Q Consensus 151 ~~~~~~~~lS~~~L~~l~~~l~~L~~ek~~R~~~ 184 (448)
.|-. ...+|.++.+.|...-+.|..||.-|..-
T Consensus 178 ~PLl-~~~L~~~Qw~~Le~i~~~L~~EY~~RR~m 210 (318)
T PF10239_consen 178 KPLL-KKSLTDEQWEKLEKINQALSKEYECRRQM 210 (318)
T ss_pred CCCc-CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222 56799999999999999999999999883
No 11
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=83.18 E-value=93 Score=35.72 Aligned_cols=35 Identities=17% Similarity=0.348 Sum_probs=17.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013174 159 LTLKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVH 193 (448)
Q Consensus 159 lS~~~L~~l~~~l~~L~~ek~~R~~~~~~l~~~I~ 193 (448)
-..++++.++..+..+..+++.=..++....+.|.
T Consensus 334 ~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~ 368 (1074)
T KOG0250|consen 334 AQDEEIEEARKDLDDLRREVNDLKEEIREIENSIR 368 (1074)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666665555444443333333333
No 12
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=77.51 E-value=1.2e+02 Score=33.39 Aligned_cols=41 Identities=12% Similarity=0.171 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCC
Q 013174 298 DLIEQAEVEVERLDQLKASRMKEIAFKRQGELEEIFARAHI 338 (448)
Q Consensus 298 ~~i~~l~~El~RL~~lK~~~ik~li~~~r~el~elWd~~~~ 338 (448)
..+..++.-...|..++.......+..+...+.+.+..+.-
T Consensus 480 ~~~~~~~~~~~~l~~~~~~l~~~~~~~le~~~~~~f~~l~~ 520 (650)
T TIGR03185 480 RAITIADKAKKTLKEFREKLLERKLQQLEEEITKSFKKLMR 520 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444555555566666666666666677777777776643
No 13
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=76.77 E-value=55 Score=33.13 Aligned_cols=37 Identities=19% Similarity=0.354 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 013174 51 VYKRKVEQAAKSRAQLLQALSDAKIELASLLSALGEK 87 (448)
Q Consensus 51 ~~~~~v~e~~~~k~~l~~~I~~~~~el~~L~~eLg~~ 87 (448)
=|+..++++...+..+..........|..|-.+++-.
T Consensus 217 DWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~ 253 (359)
T PF10498_consen 217 DWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKT 253 (359)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 4667788888888888888888888888877777644
No 14
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=74.64 E-value=1.9e+02 Score=34.39 Aligned_cols=45 Identities=18% Similarity=0.406 Sum_probs=34.0
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhcC
Q 013174 222 SKSISNDTLARLAKTVLALKEDK---KQRLHKLQELATQLIDLWNLMD 266 (448)
Q Consensus 222 ~~~ls~~~l~~L~~~~~~L~~~K---~~r~~~~~~l~~~l~~LW~~L~ 266 (448)
..++.+..|..|+..+..|+..- ..+...+.++..-+...|....
T Consensus 765 ~~GvD~~~I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~~~~~~~~~ 812 (1201)
T PF12128_consen 765 GKGVDPERIQQLKQEIEQLEKELKRIEERRAEVIEYEDWLQEEWDKVD 812 (1201)
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Confidence 35677788888888888776654 3556678889999999998754
No 15
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=73.99 E-value=5 Score=27.89 Aligned_cols=25 Identities=28% Similarity=0.574 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHH-HhchHHHHHHH
Q 013174 365 ADMDNQIAKAKEEA-HSRKEILDKVE 389 (448)
Q Consensus 365 ~~~E~ei~~lk~~~-~~~k~il~~v~ 389 (448)
..+|.||..|...| ..|+||++.|+
T Consensus 22 ~~ME~Eieelr~RY~~KRqPIldAie 47 (49)
T PF11629_consen 22 PEMEQEIEELRQRYQAKRQPILDAIE 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHh
Confidence 45899999998877 56899999885
No 16
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=73.46 E-value=2.4e+02 Score=35.06 Aligned_cols=45 Identities=24% Similarity=0.354 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 013174 43 QIEKECLDVYKRKVEQAAKSRAQLLQALSDAKIELASLLSALGEKS 88 (448)
Q Consensus 43 ~l~~~~~~~~~~~v~e~~~~k~~l~~~I~~~~~el~~L~~eLg~~~ 88 (448)
.++.++ .....-+.+.+..+..+..+++....++..+...++...
T Consensus 1045 kle~el-~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~ 1089 (1930)
T KOG0161|consen 1045 KLEGEL-KDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQ 1089 (1930)
T ss_pred HHHHHH-HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 344343 344445555666666666666666666666666665543
No 17
>PF11995 DUF3490: Domain of unknown function (DUF3490); InterPro: IPR021881 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 160 amino acids in length. This domain is found associated with PF00225 from PFAM. This domain is found associated with PF00225 from PFAM. This domain has two conserved sequence motifs: EVE and ESA.
Probab=73.14 E-value=65 Score=28.36 Aligned_cols=123 Identities=15% Similarity=0.149 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHhcc---------------------cccccc-CCCCCCCchHHHHHHHHHHHH
Q 013174 251 LQELATQLIDLWNLMDTPSEERRLFDHVTCN---------------------ISAYVD-GVTVPGALALDLIEQAEVEVE 308 (448)
Q Consensus 251 ~~~l~~~l~~LW~~L~~~~ee~~~F~~~~~~---------------------i~~s~~-~~~~~~~ls~~~i~~l~~El~ 308 (448)
+...+.+|..||..|.+|--.|..|.-...| +++... -..++...-..++.++..|-+
T Consensus 2 Fe~qq~~IIeLW~~C~VsLvHRTyFfLLFkGdpaD~iYmEVElRRLs~Lk~~fs~~~~~~~~~~~~s~~sS~kaL~rER~ 81 (161)
T PF11995_consen 2 FERQQQEIIELWHACNVSLVHRTYFFLLFKGDPADSIYMEVELRRLSFLKETFSEGGQAAGGGHTLSLASSIKALRRERE 81 (161)
T ss_pred hHHHHHHHHHHHHhcCcchhhhhhhhheecCCcccceEEEeehHHHHHHHHHhccCCcccCCCCcccHHHHHHHHHHHHH
Confidence 3457789999999999998766666322221 110000 001122222458888888877
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhcCCCCChHHHHHHHHHHHHHHHHHHHh
Q 013174 309 RLDQLKASRMKEIAFKRQGELEEIFARAHIEIDPVAAREKIMTLIDSGNVEPAELLADMDNQIAKAKEEAHS 380 (448)
Q Consensus 309 RL~~lK~~~ik~li~~~r~el~elWd~~~~~~e~~~~~~~~~~~~~s~~~~~e~lL~~~E~ei~~lk~~~~~ 380 (448)
-|-..-..++ .+.+-+.++-+-+++.+.++...++...+=++-.|.+.+-+..+- |++|-.+.+.
T Consensus 82 ~L~k~m~~rl------s~eere~ly~kWgI~l~sK~RrlQL~~~LWt~~~d~~Hv~eSA~l-VAkLvgf~e~ 146 (161)
T PF11995_consen 82 MLAKQMQKRL------SREEREELYKKWGIPLDSKQRRLQLANRLWTDTKDMEHVRESAEL-VAKLVGFVEP 146 (161)
T ss_pred HHHHHHHHhC------CHHHHHHHHHhcCCCCcchHHHHHHHHHHcCCcchHHHHHHHHHH-HHHHHhhccc
Confidence 6644333333 456778999999999988766655555443322244444443332 5555555443
No 18
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=72.77 E-value=1.2e+02 Score=31.29 Aligned_cols=114 Identities=18% Similarity=0.253 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH----HHHHHHHHhccccccccCCCCCCCchHHHHHH
Q 013174 227 NDTLARLAKTVLALKEDKKQRLHKLQELATQLIDLWNLMDTPSE----ERRLFDHVTCNISAYVDGVTVPGALALDLIEQ 302 (448)
Q Consensus 227 ~~~l~~L~~~~~~L~~~K~~r~~~~~~l~~~l~~LW~~L~~~~e----e~~~F~~~~~~i~~s~~~~~~~~~ls~~~i~~ 302 (448)
......+...+..|..-+. ++.........+...|.....+.. +...+...+.++ ....+.
T Consensus 286 ~~~~~~~~~~~~~l~~~~~-~l~~yl~~~~~~~~~~~~~~~~i~~~~~~l~~L~~~Y~~F--------------~~aY~~ 350 (412)
T PF04108_consen 286 RELYNALSEALEELRKFGE-RLPSYLAAFHDFEERWEEEKESIQAYIDELEQLCEFYEGF--------------LSAYDS 350 (412)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHH
Confidence 3344455666666666666 666677777788888886655432 333344444332 346777
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhcCCCCChHHHH
Q 013174 303 AEVEVERLDQLKASRMKEIAFKRQGELEEIFARAHIEIDPVAAREKIMTLIDSGNVEPAELL 364 (448)
Q Consensus 303 l~~El~RL~~lK~~~ik~li~~~r~el~elWd~~~~~~e~~~~~~~~~~~~~s~~~~~e~lL 364 (448)
+-.|+.|=... ..+|+.++.....+|..+-+ +++..+..|..-+ |+.-+++++
T Consensus 351 LL~Ev~RRr~~-~~k~~~i~~~~~eeL~~l~e------eE~~~Re~F~~e~--GdyLP~diw 403 (412)
T PF04108_consen 351 LLLEVERRRAV-RDKMKKIIREANEELDKLRE------EEQRRREAFLKEY--GDYLPEDIW 403 (412)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHc--cCcCChhhC
Confidence 78888887777 55688888888888888776 4455555554433 565566653
No 19
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=71.84 E-value=1.6e+02 Score=32.22 Aligned_cols=127 Identities=18% Similarity=0.305 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCCCCCcHHHHHHH
Q 013174 36 ERDKMLLQIEKECLDVYKR-------KVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAA 108 (448)
Q Consensus 36 er~~~~~~l~~~~~~~~~~-------~v~e~~~~k~~l~~~I~~~~~el~~L~~eLg~~~~~~~~~~~~~~~sL~~~l~~ 108 (448)
+|+....++..+ ...|.. .|.....+|......|..+...|..|-..+..++.+. + ..+|. +....
T Consensus 12 Erd~ya~~lk~e-~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~---~--pa~ps-e~E~~ 84 (617)
T PF15070_consen 12 ERDQYAQQLKEE-SAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPE---P--PAGPS-EVEQQ 84 (617)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcc---c--cccch-HHHHH
Confidence 455555455433 333333 3444555666666777777777777777777766432 1 23443 34456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013174 109 IAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKSDRLHKV 185 (448)
Q Consensus 109 l~~~le~L~~~k~~R~~e~~~l~~~i~~l~~~L~~~~~~~~~~~~~~~~~lS~~~L~~l~~~l~~L~~ek~~R~~~~ 185 (448)
+...++.|+++++.-..++......-..|. .|. .--.++|.++...+..++....+|...+
T Consensus 85 Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls-~L~---------------~EqEerL~ELE~~le~~~e~~~D~~kLL 145 (617)
T PF15070_consen 85 LQAEAEHLRKELESLEEQLQAQVENNEQLS-RLN---------------QEQEERLAELEEELERLQEQQEDRQKLL 145 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777766555555544333222221 110 0025666667667777766665555433
No 20
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=69.87 E-value=1.2e+02 Score=30.12 Aligned_cols=87 Identities=11% Similarity=0.026 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCC----CCCCCCCCCcHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 013174 55 KVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAG----LGIPEKTSGTIKEQLAAIA--PALEQLWKQKEERVKEFS 128 (448)
Q Consensus 55 ~v~e~~~~k~~l~~~I~~~~~el~~L~~eLg~~~~~~----~~~~~~~~~sL~~~l~~l~--~~le~L~~~k~~R~~e~~ 128 (448)
+++--.-...+|.+.|.+.+..+..+-.++...+.+. -..++.....+..++..++ .++..-...+.=|++-+.
T Consensus 69 ~Lely~~~c~EL~~~I~egr~~~~~~E~~~~~~nPpLf~EY~~a~~d~r~~m~~q~~~vK~~aRl~aK~~WYeWR~~ll~ 148 (325)
T PF08317_consen 69 MLELYQFSCRELKKYISEGRQIFEEIEEETYESNPPLFREYYTADPDMRLLMDNQFQLVKTYARLEAKKMWYEWRMQLLE 148 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555677788888888888888776544221 0001222234445555554 455555556677777777
Q ss_pred HHHHHHHHHHhHh
Q 013174 129 DVQSQIQKICGEI 141 (448)
Q Consensus 129 ~l~~~i~~l~~~L 141 (448)
.++..+..-...|
T Consensus 149 gl~~~L~~~~~~L 161 (325)
T PF08317_consen 149 GLKEGLEENLELL 161 (325)
T ss_pred HHHHHHHHHHHHH
Confidence 7777766655555
No 21
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=68.72 E-value=2.9e+02 Score=34.02 Aligned_cols=216 Identities=19% Similarity=0.255 Sum_probs=128.3
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CC-CcCC---
Q 013174 19 LLHKLQEIWDEVGENDEERDKMLLQIEKECLDVYKRKVEQAAKSRAQLLQALSDAKIELASLLSALG---EK-SIAG--- 91 (448)
Q Consensus 19 ~l~~L~~IWdeiG~~~~er~~~~~~l~~~~~~~~~~~v~e~~~~k~~l~~~I~~~~~el~~L~~eLg---~~-~~~~--- 91 (448)
++.-+..+=+.+-..+..-+.++....+.-.+-....|++.........+.|..+..+...+..-+. .. +..+
T Consensus 544 LL~~vR~Lae~lE~~E~~~~~~~~~~~k~~~~~a~e~i~~L~~~l~e~~~~i~sLl~erd~y~e~l~~~e~~~~~k~nss 623 (1822)
T KOG4674|consen 544 LLNAVRELAEKLEAAEKTQDKTLQNILKETINEASEKIAELEKELEEQEQRIESLLTERDMYKELLAELEDSHQLKPNSS 623 (1822)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCch
Confidence 3444444444444444333555555555555566667777777777777777777766665532221 11 1111
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCCCCCHHHHHHH
Q 013174 92 LGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVK----EFSDVQSQIQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEY 167 (448)
Q Consensus 92 ~~~~~~~~~sL~~~l~~l~~~le~L~~~k~~R~~----e~~~l~~~i~~l~~~L~~~~~~~~~~~~~~~~~lS~~~L~~l 167 (448)
.....+.+.+...++..+...++.++.++..+.. +|..++.++..|-..++-... ...++.+++..|
T Consensus 624 ~~~~t~~~~~~e~~l~qLe~~le~~~~E~~~~~~~l~e~~~~l~~ev~~ir~~l~k~~~---------~~~fA~ekle~L 694 (1822)
T KOG4674|consen 624 ALDQTEAPRAKEKRLRQLENELESYKKEKRENLKKLQEDFDSLQKEVTAIRSQLEKLKN---------ELNLAKEKLENL 694 (1822)
T ss_pred hhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH---------HHHHHHHHHHHH
Confidence 0001112334466777888888888887776654 566677777777777755433 335788999999
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhCCCccchhhhccCCCCCCCCCccCCCCHHHHHHHHHHHHHHHHHH
Q 013174 168 QAQLQELQKEKS---DRLHKVLEFVSTVHDLCGVLGMDFFSTVTEVHPSLNDSTGVQSKSISNDTLARLAKTVLALKEDK 244 (448)
Q Consensus 168 ~~~l~~L~~ek~---~R~~~~~~l~~~I~~L~~~L~~~~~~~~~~i~~sl~~~~~~~~~~ls~~~l~~L~~~~~~L~~~K 244 (448)
...++.++.+.. .|...+...+..-......+..+ ..-+.+.+..|...+..|..++
T Consensus 695 ~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~e--------------------L~~a~~k~~~le~ev~~LKqE~ 754 (1822)
T KOG4674|consen 695 EKNLELTKEEVETLEERNKNLQSTISKQEQTVHTLSQE--------------------LLSANEKLEKLEAELSNLKQEK 754 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHhhhHHHHHHHHHHHHHHHHH
Confidence 999999998887 55554444444333333333211 1134566788888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013174 245 KQRLHKLQELATQLIDLWN 263 (448)
Q Consensus 245 ~~r~~~~~~l~~~l~~LW~ 263 (448)
.-+..--..|......|..
T Consensus 755 ~ll~~t~~rL~~e~~~l~~ 773 (1822)
T KOG4674|consen 755 LLLKETEERLSQELEKLSA 773 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7776666666666665554
No 22
>PF11995 DUF3490: Domain of unknown function (DUF3490); InterPro: IPR021881 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 160 amino acids in length. This domain is found associated with PF00225 from PFAM. This domain is found associated with PF00225 from PFAM. This domain has two conserved sequence motifs: EVE and ESA.
Probab=66.82 E-value=5.1 Score=35.09 Aligned_cols=24 Identities=13% Similarity=0.159 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHcCCCCchHHHH
Q 013174 323 FKRQGELEEIFARAHIEIDPVAAR 346 (448)
Q Consensus 323 ~~~r~el~elWd~~~~~~e~~~~~ 346 (448)
...|.+|-+||+.|++|--.|..|
T Consensus 3 e~qq~~IIeLW~~C~VsLvHRTyF 26 (161)
T PF11995_consen 3 ERQQQEIIELWHACNVSLVHRTYF 26 (161)
T ss_pred HHHHHHHHHHHHhcCcchhhhhhh
Confidence 457899999999999999888765
No 23
>COG5293 Predicted ATPase [General function prediction only]
Probab=65.77 E-value=1.7e+02 Score=30.37 Aligned_cols=59 Identities=15% Similarity=0.263 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhCC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 013174 20 LHKLQEIWDEVGE--NDEERDKMLLQIEKECLDVYKRKVEQAAKSRAQLLQALSDAKIELASLLSALGE 86 (448)
Q Consensus 20 l~~L~~IWdeiG~--~~~er~~~~~~l~~~~~~~~~~~v~e~~~~k~~l~~~I~~~~~el~~L~~eLg~ 86 (448)
.++.+.+|+++|. |.. -.+. ..|+..+++.++++ ..+-+..+|+..+..+..+-..+.+
T Consensus 300 pd~i~~~ye~vg~~fpg~-Vkk~----~e~v~~F~r~~~e~---R~~yl~~ei~~i~~dLk~~n~~~~~ 360 (591)
T COG5293 300 PDEIQVLYEEVGVLFPGQ-VKKD----FEHVIAFNRAITEE---RHDYLQEEIAEIEGDLKEVNAELDD 360 (591)
T ss_pred hHHHHHHHHHhhhcChHH-HHHh----HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999988 433 2221 24557788888877 6667777777777777666555543
No 24
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=64.03 E-value=2.1e+02 Score=30.80 Aligned_cols=70 Identities=17% Similarity=0.342 Sum_probs=44.1
Q ss_pred chHHHHHHHHHHHHHHhCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 013174 14 TTCSSLLHKLQEIWDEVGEND-EERDKMLLQIEKECLDVYKRKVEQAAKSRAQLLQALSDAKIELASLLSALGE 86 (448)
Q Consensus 14 ~~~~~~l~~L~~IWdeiG~~~-~er~~~~~~l~~~~~~~~~~~v~e~~~~k~~l~~~I~~~~~el~~L~~eLg~ 86 (448)
+-+...+.+++.=|++|--.. .+.+..+..++.. +-.-.+-.+......+.+.+.....++..|..+|..
T Consensus 56 Gqt~~~fe~w~~~w~~i~~~~~~~ie~~L~~ae~~---~~~~rf~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~ 126 (560)
T PF06160_consen 56 GQTEEKFEEWRQKWDEIVTKQLPEIEEQLFEAEEY---ADKYRFKKAKQAIKEIEEQLDEIEEDIKEILDELDE 126 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---HhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567899999999986332 3455556565533 223355566666666777777777777776666643
No 25
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=64.01 E-value=3.6e+02 Score=33.33 Aligned_cols=142 Identities=15% Similarity=0.194 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCCCCCcHHHHHHHHHHHHHHHH
Q 013174 38 DKMLLQIEKECLDVYKRKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLW 117 (448)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~v~e~~~~k~~l~~~I~~~~~el~~L~~eLg~~~~~~~~~~~~~~~sL~~~l~~l~~~le~L~ 117 (448)
+..+.+++.. |..+-.+.......+...|..++.++..|...++--..... +...+---|..-+..++.+++.|+
T Consensus 635 e~~l~qLe~~----le~~~~E~~~~~~~l~e~~~~l~~ev~~ir~~l~k~~~~~~-fA~ekle~L~~~ie~~K~e~~tL~ 709 (1822)
T KOG4674|consen 635 EKRLRQLENE----LESYKKEKRENLKKLQEDFDSLQKEVTAIRSQLEKLKNELN-LAKEKLENLEKNLELTKEEVETLE 709 (1822)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555444 33455566667777788888888888888888876543220 000001122223344445555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013174 118 KQKEERVKEFSDVQSQIQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDLCG 197 (448)
Q Consensus 118 ~~k~~R~~e~~~l~~~i~~l~~~L~~~~~~~~~~~~~~~~~lS~~~L~~l~~~l~~L~~ek~~R~~~~~~l~~~I~~L~~ 197 (448)
.+...-...+..-...++.+..+|. .+...+..+...+..|+.|+.-+......+......|+.
T Consensus 710 er~~~l~~~i~~~~q~~~~~s~eL~----------------~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~ 773 (1822)
T KOG4674|consen 710 ERNKNLQSTISKQEQTVHTLSQELL----------------SANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSA 773 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444433344444444444444441 247888899999999999999999999999999888888
Q ss_pred HhC
Q 013174 198 VLG 200 (448)
Q Consensus 198 ~L~ 200 (448)
+..
T Consensus 774 e~~ 776 (1822)
T KOG4674|consen 774 EQE 776 (1822)
T ss_pred HHH
Confidence 765
No 26
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=63.84 E-value=3.2e+02 Score=32.82 Aligned_cols=34 Identities=6% Similarity=0.096 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHh
Q 013174 362 ELLADMDNQIAKAKEEAHSRKEILDKVEKWMSAC 395 (448)
Q Consensus 362 ~lL~~~E~ei~~lk~~~~~~k~il~~v~~~~~l~ 395 (448)
+.....+..+...+..+..-..+-..+..|..+.
T Consensus 709 ~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~l~ 742 (1311)
T TIGR00606 709 DKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLK 742 (1311)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3456666677777777777666666666665554
No 27
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=63.48 E-value=3.2e+02 Score=32.57 Aligned_cols=45 Identities=13% Similarity=0.341 Sum_probs=33.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhC
Q 013174 156 ESDLTLKKLDEYQAQLQELQKEK---SDRLHKVLEFVSTVHDLCGVLG 200 (448)
Q Consensus 156 ~~~lS~~~L~~l~~~l~~L~~ek---~~R~~~~~~l~~~I~~L~~~L~ 200 (448)
+.++-...|..++..+..|.++. ..+...|..+..-+...|..+.
T Consensus 765 ~~GvD~~~I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~~~~~~~~~ 812 (1201)
T PF12128_consen 765 GKGVDPERIQQLKQEIEQLEKELKRIEERRAEVIEYEDWLQEEWDKVD 812 (1201)
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Confidence 34556788888999988888775 4666777777777777777654
No 28
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=63.18 E-value=2e+02 Score=30.22 Aligned_cols=183 Identities=14% Similarity=0.145 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013174 50 DVYKRKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSD 129 (448)
Q Consensus 50 ~~~~~~v~e~~~~k~~l~~~I~~~~~el~~L~~eLg~~~~~~~~~~~~~~~sL~~~l~~l~~~le~L~~~k~~R~~e~~~ 129 (448)
+.+...+.+.+........++...+..+..+...++..+......+.....++..++..++.++..+...+.+..-.+..
T Consensus 200 ~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~l~~~y~~~hP~v~~ 279 (498)
T TIGR03007 200 GDYYSEISEAQEELEAARLELNEAIAQRDALKRQLGGEEPVLLAGSSVANSELDGRIEALEKQLDALRLRYTDKHPDVIA 279 (498)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCcccccCCCchHHHHHHHHHHHHHHHHHhcccChHHHH
Q ss_pred HHHHHHHHHhHhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccchhhh
Q 013174 130 VQSQIQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDLCGVLGMDFFSTVTE 209 (448)
Q Consensus 130 l~~~i~~l~~~L~~~~~~~~~~~~~~~~~lS~~~L~~l~~~l~~L~~ek~~R~~~~~~l~~~I~~L~~~L~~~~~~~~~~ 209 (448)
++.++..+-..+....... .........+...+..+...+..++.+...-..++..+...+..+-..++.-+....
T Consensus 280 l~~qi~~l~~~l~~~~~~~--~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~-- 355 (498)
T TIGR03007 280 TKREIAQLEEQKEEEGSAK--NGGPERGEIANPVYQQLQIELAEAEAEIASLEARVAELTARIERLESLLRTIPEVEA-- 355 (498)
T ss_pred HHHHHHHHHHHHHhhcccc--ccCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH--
Q ss_pred ccCCCCCCCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013174 210 VHPSLNDSTGVQSKSISNDTLARLAKTVLALKEDKKQRLHKLQELA 255 (448)
Q Consensus 210 i~~sl~~~~~~~~~~ls~~~l~~L~~~~~~L~~~K~~r~~~~~~l~ 255 (448)
. +..|+..++..+..+..=.++..+..
T Consensus 356 -e------------------l~~L~Re~~~~~~~Y~~l~~r~eea~ 382 (498)
T TIGR03007 356 -E------------------LTQLNRDYEVNKSNYEQLLTRRESAE 382 (498)
T ss_pred -H------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
No 29
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=63.08 E-value=3e+02 Score=32.17 Aligned_cols=38 Identities=8% Similarity=0.108 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013174 162 KKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDLCGVL 199 (448)
Q Consensus 162 ~~L~~l~~~l~~L~~ek~~R~~~~~~l~~~I~~L~~~L 199 (448)
..+..++..+..++.+...-...+..+...+..+-..+
T Consensus 798 ~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~e~ 835 (1164)
T TIGR02169 798 AELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEI 835 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555554444444433
No 30
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=62.75 E-value=43 Score=37.35 Aligned_cols=36 Identities=22% Similarity=0.344 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013174 159 LTLKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHD 194 (448)
Q Consensus 159 lS~~~L~~l~~~l~~L~~ek~~R~~~~~~l~~~I~~ 194 (448)
.+.+.+..|+..+..|+.+...=...+..+...|..
T Consensus 500 ~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~ 535 (722)
T PF05557_consen 500 SLSEELNELQKEIEELERENERLRQELEELESELEK 535 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356888889999999998876655555555555544
No 31
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=61.04 E-value=1.4e+02 Score=27.83 Aligned_cols=41 Identities=27% Similarity=0.426 Sum_probs=32.0
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013174 99 SGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICG 139 (448)
Q Consensus 99 ~~sL~~~l~~l~~~le~L~~~k~~R~~e~~~l~~~i~~l~~ 139 (448)
..-+++.+..++.+++++.++|.+.+.++..+..+......
T Consensus 130 ~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~e 170 (290)
T COG4026 130 YMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQE 170 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677788888888999999988888888888777666533
No 32
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=60.00 E-value=3.4e+02 Score=31.79 Aligned_cols=26 Identities=19% Similarity=0.396 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhchHHH
Q 013174 360 PAELLADMDNQIAKAKEEAHSRKEIL 385 (448)
Q Consensus 360 ~e~lL~~~E~ei~~lk~~~~~~k~il 385 (448)
+.+-.+.++.++.+....+...+.-+
T Consensus 776 s~~~v~~le~~l~~~~~~~~~~~~~~ 801 (1293)
T KOG0996|consen 776 SKESVEKLERALSKMSDKARQHQEQL 801 (1293)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555565555555555444443
No 33
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.63 E-value=1.4e+02 Score=28.90 Aligned_cols=141 Identities=17% Similarity=0.208 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 013174 105 QLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKSDRLHK 184 (448)
Q Consensus 105 ~l~~l~~~le~L~~~k~~R~~e~~~l~~~i~~l~~~L~~~~~~~~~~~~~~~~~lS~~~L~~l~~~l~~L~~ek~~R~~~ 184 (448)
.+..=...+.++.+.+.+-..++..+..++..+.......-. ..+=+...+..|+..|..++....+|...
T Consensus 32 ~i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~---------~i~~~~~eik~l~~eI~~~~~~I~~r~~~ 102 (265)
T COG3883 32 KIQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQK---------EIDQSKAEIKKLQKEIAELKENIVERQEL 102 (265)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556677777777777777788888888877766543321 12346788888888888888888888887
Q ss_pred HHHHHHHHHH------HHHHh-CC-CccchhhhccCCCCCCCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013174 185 VLEFVSTVHD------LCGVL-GM-DFFSTVTEVHPSLNDSTGVQSKSISNDTLARLAKTVLALKEDKKQRLHKLQELAT 256 (448)
Q Consensus 185 ~~~l~~~I~~------L~~~L-~~-~~~~~~~~i~~sl~~~~~~~~~~ls~~~l~~L~~~~~~L~~~K~~r~~~~~~l~~ 256 (448)
|..-...++. +++.+ +- +|.+.++.+.. ...-..-....|..+......|+..+..-..+...+..
T Consensus 103 l~~raRAmq~nG~~t~Yidvil~SkSfsD~IsRvtA------i~~iv~aDk~ile~qk~dk~~Le~kq~~l~~~~e~l~a 176 (265)
T COG3883 103 LKKRARAMQVNGTATSYIDVILNSKSFSDLISRVTA------ISVIVDADKKILEQQKEDKKSLEEKQAALEDKLETLVA 176 (265)
T ss_pred HHHHHHHHHHcCChhHHHHHHHccCcHHHHHHHHHH------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7776666543 12221 11 23332211110 00011223556677777777777777666666655444
Q ss_pred HHHH
Q 013174 257 QLID 260 (448)
Q Consensus 257 ~l~~ 260 (448)
-...
T Consensus 177 l~~e 180 (265)
T COG3883 177 LQNE 180 (265)
T ss_pred HHHH
Confidence 4333
No 34
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=59.55 E-value=75 Score=25.82 Aligned_cols=75 Identities=17% Similarity=0.346 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013174 56 VEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQ 135 (448)
Q Consensus 56 v~e~~~~k~~l~~~I~~~~~el~~L~~eLg~~~~~~~~~~~~~~~sL~~~l~~l~~~le~L~~~k~~R~~e~~~l~~~i~ 135 (448)
|-+....+..+...+..++++-+.+...+|.....+ .....|......+..++..+... +..+..++.
T Consensus 31 i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~-----~~~~~l~~e~~~lk~~i~~le~~-------~~~~e~~l~ 98 (108)
T PF02403_consen 31 IIELDQERRELQQELEELRAERNELSKEIGKLKKAG-----EDAEELKAEVKELKEEIKELEEQ-------LKELEEELN 98 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTT-----CCTHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCc-----ccHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Confidence 345556678888999999999999999998765432 12446666666666666666554 667777777
Q ss_pred HHHhHhc
Q 013174 136 KICGEIA 142 (448)
Q Consensus 136 ~l~~~L~ 142 (448)
.++..++
T Consensus 99 ~~l~~iP 105 (108)
T PF02403_consen 99 ELLLSIP 105 (108)
T ss_dssp HHHCTS-
T ss_pred HHHHcCC
Confidence 7765553
No 35
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=58.87 E-value=3.3e+02 Score=31.31 Aligned_cols=76 Identities=17% Similarity=0.212 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013174 106 LAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKSDRLHKV 185 (448)
Q Consensus 106 l~~l~~~le~L~~~k~~R~~e~~~l~~~i~~l~~~L~~~~~~~~~~~~~~~~~lS~~~L~~l~~~l~~L~~ek~~R~~~~ 185 (448)
...|..++++|+.--.-.+.++.=+..+++.+-+.=.+... ...+=.++..+..|+.+.+.=..+.
T Consensus 259 s~fykdRveelkedN~vLleekeMLeeQLq~lrarse~~tl--------------eseiiqlkqkl~dm~~erdtdr~kt 324 (1195)
T KOG4643|consen 259 SDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATL--------------ESEIIQLKQKLDDMRSERDTDRHKT 324 (1195)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCCh--------------HHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 34578899999888777888888899999988665433111 2333345555555555555444444
Q ss_pred HHHHHHHHHH
Q 013174 186 LEFVSTVHDL 195 (448)
Q Consensus 186 ~~l~~~I~~L 195 (448)
.++..++..|
T Consensus 325 eeL~eEnstL 334 (1195)
T KOG4643|consen 325 EELHEENSTL 334 (1195)
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 36
>PRK02224 chromosome segregation protein; Provisional
Probab=58.54 E-value=3.2e+02 Score=31.06 Aligned_cols=24 Identities=13% Similarity=0.462 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHhchHHHH
Q 013174 363 LLADMDNQIAKAKEEAHSRKEILD 386 (448)
Q Consensus 363 lL~~~E~ei~~lk~~~~~~k~il~ 386 (448)
-++.++.++..++..+..-+.+.+
T Consensus 483 ~~~~le~~l~~~~~~~e~l~~~~~ 506 (880)
T PRK02224 483 ELEDLEEEVEEVEERLERAEDLVE 506 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555554444433
No 37
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=58.39 E-value=1.7e+02 Score=27.78 Aligned_cols=39 Identities=21% Similarity=0.183 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 013174 162 KKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDLCGVLG 200 (448)
Q Consensus 162 ~~L~~l~~~l~~L~~ek~~R~~~~~~l~~~I~~L~~~L~ 200 (448)
--+++|...-..|..+...|...=..++..|.++...|.
T Consensus 201 ~v~~Ei~~lk~~l~~e~~~R~~~Dd~Iv~aln~yt~~lQ 239 (247)
T PF06705_consen 201 FVLEEIAALKNALALESQEREQSDDDIVQALNHYTKALQ 239 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 344445555555666666666666666666666666554
No 38
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=57.08 E-value=39 Score=30.12 Aligned_cols=94 Identities=18% Similarity=0.217 Sum_probs=61.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-ccchhhh-------ccCCCCCCCCCccCCCCH
Q 013174 156 ESDLTLKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDLCGVLGMD-FFSTVTE-------VHPSLNDSTGVQSKSISN 227 (448)
Q Consensus 156 ~~~lS~~~L~~l~~~l~~L~~ek~~R~~~~~~l~~~I~~L~~~L~~~-~~~~~~~-------i~~sl~~~~~~~~~~ls~ 227 (448)
..++|.+.+..+...+..|+.+...-...+..+..++..|...+-.+ ....+.. +...+.... .....+|.
T Consensus 66 ~~~~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~-~~~~~vs~ 144 (169)
T PF07106_consen 66 LEVPSPEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLR-SGSKPVSP 144 (169)
T ss_pred cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCCCH
Confidence 34678999999999999999999988888888888888887776531 1111100 000000000 12334778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013174 228 DTLARLAKTVLALKEDKKQRLHK 250 (448)
Q Consensus 228 ~~l~~L~~~~~~L~~~K~~r~~~ 250 (448)
+-+..+......+......|...
T Consensus 145 ee~~~~~~~~~~~~k~w~kRKri 167 (169)
T PF07106_consen 145 EEKEKLEKEYKKWRKEWKKRKRI 167 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888887777777766553
No 39
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=56.30 E-value=1.7e+02 Score=30.43 Aligned_cols=75 Identities=21% Similarity=0.221 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhccccccccCCCCCCCchHHHHHHHHHHHHH
Q 013174 230 LARLAKTVLALKEDKKQRLHKLQELATQLIDLWNLMDTPSEERRLFDHVTCNISAYVDGVTVPGALALDLIEQAEVEVER 309 (448)
Q Consensus 230 l~~L~~~~~~L~~~K~~r~~~~~~l~~~l~~LW~~L~~~~ee~~~F~~~~~~i~~s~~~~~~~~~ls~~~i~~l~~El~R 309 (448)
++.-++.++.-..+|..-+-++..+...-..|=++--....++..|...+-.+ +.++..=+.||+|
T Consensus 399 la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvsqclEm--------------dk~LskKeeever 464 (527)
T PF15066_consen 399 LANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQCLEM--------------DKTLSKKEEEVER 464 (527)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHH--------------HHHhhhhHHHHHH
Confidence 44445555555555555555555555555556555555555666666654331 5588899999999
Q ss_pred HHHHHHHhH
Q 013174 310 LDQLKASRM 318 (448)
Q Consensus 310 L~~lK~~~i 318 (448)
|+.+|-..-
T Consensus 465 LQ~lkgelE 473 (527)
T PF15066_consen 465 LQQLKGELE 473 (527)
T ss_pred HHHHHHHHH
Confidence 999997654
No 40
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.15 E-value=56 Score=30.27 Aligned_cols=69 Identities=16% Similarity=0.179 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCCCCCcHHHHHHHHHHHHHHHHHH
Q 013174 48 CLDVYKRKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQ 119 (448)
Q Consensus 48 ~~~~~~~~v~e~~~~k~~l~~~I~~~~~el~~L~~eLg~~~~~~~~~~~~~~~sL~~~l~~l~~~le~L~~~ 119 (448)
+...+......-..+|....++|...+.+...+.+.++...... |+.-..++..++..++..+..|+.+
T Consensus 19 it~k~~~~~~~~~~ekk~~l~~i~~~leEa~ell~qMdlEvr~l---p~~~Rs~~~~KlR~yksdl~~l~~e 87 (220)
T KOG1666|consen 19 ITKKIGRALSLPGSEKKQLLSEIDSKLEEANELLDQMDLEVREL---PPNFRSSYLSKLREYKSDLKKLKRE 87 (220)
T ss_pred HHHhHHHHhcCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC---CchhhhHHHHHHHHHHHHHHHHHHH
Confidence 33334444444456788899999999999999999887765433 2233567777888888877777665
No 41
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=54.52 E-value=2.2e+02 Score=27.91 Aligned_cols=43 Identities=9% Similarity=0.263 Sum_probs=27.9
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhc
Q 013174 100 GTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIA 142 (448)
Q Consensus 100 ~sL~~~l~~l~~~le~L~~~k~~R~~e~~~l~~~i~~l~~~L~ 142 (448)
.++..+.+.+..++.+++..+.+--..+..+...+..+-...+
T Consensus 58 ~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~ 100 (294)
T COG1340 58 QELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRN 100 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3566666777777777777766666666666666666655444
No 42
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=54.34 E-value=2e+02 Score=27.26 Aligned_cols=103 Identities=18% Similarity=0.279 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013174 52 YKRKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQ 131 (448)
Q Consensus 52 ~~~~v~e~~~~k~~l~~~I~~~~~el~~L~~eLg~~~~~~~~~~~~~~~sL~~~l~~l~~~le~L~~~k~~R~~e~~~l~ 131 (448)
++.++.+.++.+.+|.++++.+..+- ..+..|....+.|..+|.....++..+.
T Consensus 6 ir~K~~~lek~k~~i~~e~~~~e~ee--------------------------~~L~e~~kE~~~L~~Er~~h~eeLrqI~ 59 (230)
T PF10146_consen 6 IRNKTLELEKLKNEILQEVESLENEE--------------------------KCLEEYRKEMEELLQERMAHVEELRQIN 59 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666666777777777666554421 3566777778888888888888887777
Q ss_pred HHHHHHHhHhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCc
Q 013174 132 SQIQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDLCGV-LGMDF 203 (448)
Q Consensus 132 ~~i~~l~~~L~~~~~~~~~~~~~~~~~lS~~~L~~l~~~l~~L~~ek~~R~~~~~~l~~~I~~L~~~-L~~~~ 203 (448)
..|..+-+.+.. +....+..+..+..+..++ ..+...|..+..+ +|++.
T Consensus 60 ~DIn~lE~iIkq----------------a~~er~~~~~~i~r~~eey-------~~Lk~~in~~R~e~lgl~~ 109 (230)
T PF10146_consen 60 QDINTLENIIKQ----------------AESERNKRQEKIQRLYEEY-------KPLKDEINELRKEYLGLEP 109 (230)
T ss_pred HHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHcCCCC
Confidence 777776433311 2333344444555555444 4455566666666 78643
No 43
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=54.18 E-value=4.2e+02 Score=31.00 Aligned_cols=15 Identities=33% Similarity=0.435 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 013174 249 HKLQELATQLIDLWN 263 (448)
Q Consensus 249 ~~~~~l~~~l~~LW~ 263 (448)
.++..+...+..+-.
T Consensus 875 ~~~~~l~~~l~~l~~ 889 (1164)
T TIGR02169 875 AALRDLESRLGDLKK 889 (1164)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333334444433333
No 44
>PF13514 AAA_27: AAA domain
Probab=53.74 E-value=4.4e+02 Score=31.10 Aligned_cols=101 Identities=16% Similarity=0.168 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH---HHHHHHhccccccccCCCCCCCchHHHHHHHHHHHHH
Q 013174 233 LAKTVLALKEDKKQRLHKLQELATQLIDLWNLMDTPSEER---RLFDHVTCNISAYVDGVTVPGALALDLIEQAEVEVER 309 (448)
Q Consensus 233 L~~~~~~L~~~K~~r~~~~~~l~~~l~~LW~~L~~~~ee~---~~F~~~~~~i~~s~~~~~~~~~ls~~~i~~l~~El~R 309 (448)
....+..++.....-...+..+...+..||..++.+.... ..+......+... .-....+..+...+..
T Consensus 741 ~~~~~~~~~~ri~~~~~~~~~f~~~~~~L~~~l~~~~~~~~~~~~~~~L~~~l~~a--------~~~~~~~~~l~~~~~~ 812 (1111)
T PF13514_consen 741 ALAEIRELRRRIEQMEADLAAFEEQVAALAERLGPDLPEDPAEEALEALRARLEEA--------REAQEERERLQEQLEE 812 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCcHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH
Confidence 3344444445444555666778899999999998842110 1221111100000 0012345555556665
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHcCCCCch
Q 013174 310 LDQLKASRMKEIAFKRQGELEEIFARAHIEIDP 342 (448)
Q Consensus 310 L~~lK~~~ik~li~~~r~el~elWd~~~~~~e~ 342 (448)
++.-.... ..-+.....++..|+...++...+
T Consensus 813 ~~~~~~~~-~~~l~~~~~~l~~L~~~a~~~~~e 844 (1111)
T PF13514_consen 813 LEEELEQA-EEELEELEAELAELLEQAGVEDEE 844 (1111)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHhccCCCHH
Confidence 55555443 344456788899999988887643
No 45
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=52.93 E-value=41 Score=28.55 Aligned_cols=71 Identities=21% Similarity=0.209 Sum_probs=37.3
Q ss_pred ccchHHHHHHHHHHHHHHhCCChHHHHH------HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013174 12 GETTCSSLLHKLQEIWDEVGENDEERDK------MLLQ--IEKECLDVYKRKVEQAAKSRAQLLQALSDAKIELASLLSA 83 (448)
Q Consensus 12 ~~~~~~~~l~~L~~IWdeiG~~~~er~~------~~~~--l~~~~~~~~~~~v~e~~~~k~~l~~~I~~~~~el~~L~~e 83 (448)
.+....-.+.+|+. .-.|.+.++-.+ ++.. .-+.|..===..=.+.+..+..+.+++..+..+...++.+
T Consensus 26 Dd~LvsmSVReLNr--~LrG~~reEVvrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E 103 (135)
T KOG4196|consen 26 DDELVSMSVRELNR--HLRGLSREEVVRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEENSRLRRE 103 (135)
T ss_pred HHHHHHhhHHHHHH--HhcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566656888887 556887774321 1100 0011210000122455666777777777777766666655
Q ss_pred h
Q 013174 84 L 84 (448)
Q Consensus 84 L 84 (448)
+
T Consensus 104 ~ 104 (135)
T KOG4196|consen 104 L 104 (135)
T ss_pred H
Confidence 5
No 46
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=51.21 E-value=41 Score=30.80 Aligned_cols=84 Identities=20% Similarity=0.330 Sum_probs=31.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013174 101 TIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKSD 180 (448)
Q Consensus 101 sL~~~l~~l~~~le~L~~~k~~R~~e~~~l~~~i~~l~~~L~~~~~~~~~~~~~~~~~lS~~~L~~l~~~l~~L~~ek~~ 180 (448)
++-..+..++..+..+.+.+.+....+..+...+..+-..+ .--...|..+...+..|+.+...
T Consensus 71 ~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~----------------~~~~~~l~~l~~~~~~L~~~~~~ 134 (194)
T PF08614_consen 71 SLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKEL----------------SEKERRLAELEAELAQLEEKIKD 134 (194)
T ss_dssp -----------------------------------------------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccchhhhhH----------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667777778887777776666665555554442222 11257788888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHhC
Q 013174 181 RLHKVLEFVSTVHDLCGVLG 200 (448)
Q Consensus 181 R~~~~~~l~~~I~~L~~~L~ 200 (448)
+...+.+....+..+-+++-
T Consensus 135 l~~~l~ek~k~~e~l~DE~~ 154 (194)
T PF08614_consen 135 LEEELKEKNKANEILQDELQ 154 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88888887777776666654
No 47
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=51.13 E-value=1.8e+02 Score=31.45 Aligned_cols=93 Identities=14% Similarity=0.247 Sum_probs=65.8
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 013174 100 GTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKS 179 (448)
Q Consensus 100 ~sL~~~l~~l~~~le~L~~~k~~R~~e~~~l~~~i~~l~~~L~~~~~~~~~~~~~~~~~lS~~~L~~l~~~l~~L~~ek~ 179 (448)
.+....+..+...++.|..+-++....+.+++..|..|-+.|..--... .....-...+..+...+..|+.+..
T Consensus 418 ~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~------~~~~~~~rei~~~~~~I~~L~~~L~ 491 (652)
T COG2433 418 TVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREV------RDKVRKDREIRARDRRIERLEKELE 491 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 4556677888888888888888888888888888888877775422110 0122335677788889999998887
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013174 180 DRLHKVLEFVSTVHDLCGV 198 (448)
Q Consensus 180 ~R~~~~~~l~~~I~~L~~~ 198 (448)
+--..+..|...+..+-..
T Consensus 492 e~~~~ve~L~~~l~~l~k~ 510 (652)
T COG2433 492 EKKKRVEELERKLAELRKM 510 (652)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777777777777666533
No 48
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=48.63 E-value=2.8e+02 Score=27.40 Aligned_cols=145 Identities=17% Similarity=0.222 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccchhhhccCCCCCCCCCccCCCCHHHHHHHHHHHHHH
Q 013174 161 LKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDLCGVLGMDFFSTVTEVHPSLNDSTGVQSKSISNDTLARLAKTVLAL 240 (448)
Q Consensus 161 ~~~L~~l~~~l~~L~~ek~~R~~~~~~l~~~I~~L~~~L~~~~~~~~~~i~~sl~~~~~~~~~~ls~~~l~~L~~~~~~L 240 (448)
--.++.|+..+..|+.|-..=......+...... .+..-...+.+. ...+.-....|..|...+.+-
T Consensus 159 ~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~----~EekEqqLv~dc---------v~QL~~An~qia~LseELa~k 225 (306)
T PF04849_consen 159 CIQLEALQEKLKSLEEENEQLRSEASQLKTETDT----YEEKEQQLVLDC---------VKQLSEANQQIASLSEELARK 225 (306)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhh----ccHHHHHHHHHH---------HHHhhhcchhHHHHHHHHHHH
Confidence 3567778888888887754433333333322211 110001111110 112344556677888888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHhHHH
Q 013174 241 KEDKKQRLHKLQELATQLIDLWNLMDTPSEERRLFDHVTCNISAYVDGVTVPGALALDLIEQAEVEVERLDQLKASRMKE 320 (448)
Q Consensus 241 ~~~K~~r~~~~~~l~~~l~~LW~~L~~~~ee~~~F~~~~~~i~~s~~~~~~~~~ls~~~i~~l~~El~RL~~lK~~~ik~ 320 (448)
.+.-..-..+|..|..++..|=.++.--..+.+...... ..+.++=..+.+|+.-|++...+.+.-
T Consensus 226 ~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L--------------~~ske~Q~~L~aEL~elqdkY~E~~~m 291 (306)
T PF04849_consen 226 TEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHL--------------QASKESQRQLQAELQELQDKYAECMAM 291 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777777665544333322222221 124566677889999999988887755
Q ss_pred HHHHHHHHHHHHH
Q 013174 321 IAFKRQGELEEIF 333 (448)
Q Consensus 321 li~~~r~el~elW 333 (448)
|. ..+.++..+-
T Consensus 292 L~-EaQEElk~lR 303 (306)
T PF04849_consen 292 LH-EAQEELKTLR 303 (306)
T ss_pred HH-HHHHHHHHhh
Confidence 54 4788777653
No 49
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=48.39 E-value=3.8e+02 Score=28.80 Aligned_cols=176 Identities=14% Similarity=0.092 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 013174 62 SRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEI 141 (448)
Q Consensus 62 ~k~~l~~~I~~~~~el~~L~~eLg~~~~~~~~~~~~~~~sL~~~l~~l~~~le~L~~~k~~R~~e~~~l~~~i~~l~~~L 141 (448)
....|..+...+..+|..+....|-+........+..-.++...++........+......-..++.+++......-...
T Consensus 57 kVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~ 136 (546)
T KOG0977|consen 57 KVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKER 136 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34557777888888888888888776442211112112233333333333333333333333333444444333333333
Q ss_pred cCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccchhhhccCCCCCCCCCc
Q 013174 142 AGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDLCGVLGMDFFSTVTEVHPSLNDSTGVQ 221 (448)
Q Consensus 142 ~~~~~~~~~~~~~~~~~lS~~~L~~l~~~l~~L~~ek~~R~~~~~~l~~~I~~L~~~L~~~~~~~~~~i~~sl~~~~~~~ 221 (448)
.+.+... +--...|..+...+..++..+..=...+..+..++..|+..|+-- ... ++ +
T Consensus 137 ~~~re~~---------~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~-r~~---ld---------~ 194 (546)
T KOG0977|consen 137 RGAREKL---------DDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARA-RKQ---LD---------D 194 (546)
T ss_pred hhhHHHH---------HHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH-HHH---HH---------H
Confidence 2222111 001233444444444444444444444455555555555555510 000 00 0
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013174 222 SKSISNDTLARLAKTVLALKEDKKQRLHKLQELATQLI 259 (448)
Q Consensus 222 ~~~ls~~~l~~L~~~~~~L~~~K~~r~~~~~~l~~~l~ 259 (448)
...+-.+.-.+.+.++++|.-.+.....++.+.+....
T Consensus 195 Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~ 232 (546)
T KOG0977|consen 195 ETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKAR 232 (546)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHh
Confidence 11123344556666666676766666666666555443
No 50
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=48.26 E-value=4.8e+02 Score=30.03 Aligned_cols=232 Identities=19% Similarity=0.189 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccchhhhccCCCCCCCCCccCCCCHHHHHHHHHHHHH
Q 013174 160 TLKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDLCGVLGMDFFSTVTEVHPSLNDSTGVQSKSISNDTLARLAKTVLA 239 (448)
Q Consensus 160 S~~~L~~l~~~l~~L~~ek~~R~~~~~~l~~~I~~L~~~L~~~~~~~~~~i~~sl~~~~~~~~~~ls~~~l~~L~~~~~~ 239 (448)
+..++..|...|..++.+...+-.++..+.+.++.+-+..+ .|......+. ..+..+......
T Consensus 676 ~~~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~-~~~~~~~~l~----------------~e~~~~k~e~~~ 738 (1200)
T KOG0964|consen 676 SRSELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRN-AFKREHEKLK----------------RELNTIKGEKSR 738 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHH----------------HHHHHhhhHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-------------cCCCHHHHHHHHHHhccccccccCCCCCCCchHHHHHHHHHH
Q 013174 240 LKEDKKQRLHKLQELATQLIDLWNL-------------MDTPSEERRLFDHVTCNISAYVDGVTVPGALALDLIEQAEVE 306 (448)
Q Consensus 240 L~~~K~~r~~~~~~l~~~l~~LW~~-------------L~~~~ee~~~F~~~~~~i~~s~~~~~~~~~ls~~~i~~l~~E 306 (448)
++....-...++..+...++.+-.. ...++++.+.....+..| ..+|...-......
T Consensus 739 v~~s~~~k~~~Le~i~~~l~~~~~~~~~~e~el~sel~sqLt~ee~e~l~kLn~eI----------~~l~~kl~~~~~er 808 (1200)
T KOG0964|consen 739 VQESLEPKGKELEEIKTSLHKLESQSNYFESELGSELFSQLTPEELERLSKLNKEI----------NKLSVKLRALREER 808 (1200)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhcCHHHHHHHHHhhHHH----------HHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhcCCCCChHHHHHHHHHHHHHHH-------HHHH
Q 013174 307 VERLDQLKASRMKEIAFKRQGELEEIFARAHIEIDPVAAREKIMTLIDSGNVEPAELLADMDNQIAKAK-------EEAH 379 (448)
Q Consensus 307 l~RL~~lK~~~ik~li~~~r~el~elWd~~~~~~e~~~~~~~~~~~~~s~~~~~e~lL~~~E~ei~~lk-------~~~~ 379 (448)
++ ++..|...--.+..+++..+.++ .-.+....+.....-.....+ -.+.+...|+.-+..|+ ..-+
T Consensus 809 ~~-~~~rk~~le~~l~~kL~~r~~~l--~~ei~~~~d~~~~~el~~~~~---el~~~~~~~e~~~~el~~l~~~i~~~~a 882 (1200)
T KOG0964|consen 809 ID-IETRKTALEANLNTKLYKRVNEL--EQEIGDLNDSSRRSELELEKS---ELESEEKRVEAAILELKTLQDSIDKKKA 882 (1200)
T ss_pred HH-HHHHHHHHHHHHHHHHHhhhhHH--HHHhhhcccccchhhhhHHHH---HHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q ss_pred hchHHHHHHHHHHHHhHHHHHHHHhcCCchhhhccCCchhhhHHHH
Q 013174 380 SRKEILDKVEKWMSACEEESWLEDYNRDENRYNASRGAHLNLKRAE 425 (448)
Q Consensus 380 ~~k~il~~v~~~~~l~~e~~~le~~~~D~~R~~~~Rg~~~~Ll~eE 425 (448)
.-+.|-...++|..+..+..-...+.+---+.- +|-+.+.=.|+|
T Consensus 883 ~~~~~~~~lE~~~~lek~~~~~~~~dKe~Ek~~-~rk~~Ll~KreE 927 (1200)
T KOG0964|consen 883 EIKEIKKELEKAKNLEKEKKDNINFDKELEKLV-RRKHMLLKKREE 927 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH-HHHHHHHHHHHH
No 51
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=47.58 E-value=4.5e+02 Score=29.45 Aligned_cols=68 Identities=24% Similarity=0.341 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013174 60 AKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICG 139 (448)
Q Consensus 60 ~~~k~~l~~~I~~~~~el~~L~~eLg~~~~~~~~~~~~~~~sL~~~l~~l~~~le~L~~~k~~R~~e~~~l~~~i~~l~~ 139 (448)
+..+.++..+++.+..+++.|..-|++--.. -.+-+. .++.+.+...-++-++..++.+|+.+..
T Consensus 436 nak~~ql~~eletLn~k~qqls~kl~Dvr~~--------~tt~kt-------~ie~~~~q~e~~isei~qlqarikE~q~ 500 (1118)
T KOG1029|consen 436 NAKKKQLQQELETLNFKLQQLSGKLQDVRVD--------ITTQKT-------EIEEVTKQRELMISEIDQLQARIKELQE 500 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhheec--------cchHHH-------HHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666666554321 123333 3444444444455555555555555554
Q ss_pred Hhc
Q 013174 140 EIA 142 (448)
Q Consensus 140 ~L~ 142 (448)
.|.
T Consensus 501 kl~ 503 (1118)
T KOG1029|consen 501 KLQ 503 (1118)
T ss_pred HHH
Confidence 443
No 52
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=47.50 E-value=1.2e+02 Score=23.01 Aligned_cols=63 Identities=29% Similarity=0.313 Sum_probs=37.1
Q ss_pred chHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013174 14 TTCSSLLHKLQEIWDEVGENDEERDKMLLQIEKECLDVYKRKVEQAAKSRAQLLQALSDAKIEL 77 (448)
Q Consensus 14 ~~~~~~l~~L~~IWdeiG~~~~er~~~~~~l~~~~~~~~~~~v~e~~~~k~~l~~~I~~~~~el 77 (448)
++.-++|.-|++=||.|-.....=.+.+.+..+++...+-. -+-+-....++.++-.+.+..+
T Consensus 4 ~SIP~lL~~lQnEWDa~mLE~f~LRk~l~~~rqELs~aLYq-~DAA~RViArl~kErd~ar~~l 66 (70)
T PF08606_consen 4 TSIPSLLSTLQNEWDALMLENFTLRKQLDQTRQELSHALYQ-HDAACRVIARLLKERDEAREAL 66 (70)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHhHHHHHHHH
Confidence 34457899999999999988886666666666665443332 1223333344444444444333
No 53
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=47.35 E-value=5.4e+02 Score=30.28 Aligned_cols=97 Identities=23% Similarity=0.237 Sum_probs=46.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhccccccccCCCCCCCchHHHHHHHHH
Q 013174 226 SNDTLARLAKTVLALKEDKKQRLHKLQELATQLIDLWNLMDTPSEERRLFDHVTCNISAYVDGVTVPGALALDLIEQAEV 305 (448)
Q Consensus 226 s~~~l~~L~~~~~~L~~~K~~r~~~~~~l~~~l~~LW~~L~~~~ee~~~F~~~~~~i~~s~~~~~~~~~ls~~~i~~l~~ 305 (448)
++.++.+++..+..+......-..++..|...+..+=.+..--..+-..+.....++..+ +.++...++.
T Consensus 933 s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~e~~~~~~E~k~~----------~~~~k~~~e~ 1002 (1293)
T KOG0996|consen 933 SDRNIAKAQKKLSELEREIEDTEKELDDLTEELKGLEEKAAELEKEYKEAEESLKEIKKE----------LRDLKSELEN 1002 (1293)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHH
Confidence 445566666666666666666666665565555555554433233333343333333221 2334444444
Q ss_pred HHHHHHHHHHHhH--HHHHHHHHHHHHHH
Q 013174 306 EVERLDQLKASRM--KEIAFKRQGELEEI 332 (448)
Q Consensus 306 El~RL~~lK~~~i--k~li~~~r~el~el 332 (448)
.-....++|..+| +..+...+.+|.++
T Consensus 1003 i~k~~~~lk~~rId~~~K~e~~~~~l~e~ 1031 (1293)
T KOG0996|consen 1003 IKKSENELKAERIDIENKLEAINGELNEI 1031 (1293)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 4444444444333 33344455555544
No 54
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=47.03 E-value=2.6e+02 Score=26.59 Aligned_cols=146 Identities=15% Similarity=0.178 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHhCCChHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCC
Q 013174 19 LLHKLQEIWDEVGENDEER---DKMLLQIEKECLDVYKRKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIP 95 (448)
Q Consensus 19 ~l~~L~~IWdeiG~~~~er---~~~~~~l~~~~~~~~~~~v~e~~~~k~~l~~~I~~~~~el~~L~~eLg~~~~~~~~~~ 95 (448)
+|..|+.|-.++---...+ -+.+..+..+ .+-++.-+...+.....+..++..+..+++.+..-+.......
T Consensus 8 ~L~~iq~lD~e~~rl~~~~~~~~~~l~k~~~e-~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl---- 82 (239)
T COG1579 8 SLLAIQKLDLEKDRLEPRIKEIRKALKKAKAE-LEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL---- 82 (239)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 4556666666554322222 1222233222 3445555666666677777777777777777776665443221
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 013174 96 EKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQ 175 (448)
Q Consensus 96 ~~~~~sL~~~l~~l~~~le~L~~~k~~R~~e~~~l~~~i~~l~~~L~~~~~~~~~~~~~~~~~lS~~~L~~l~~~l~~L~ 175 (448)
+.++-...+..|...+..+..+...-..++.++...+..+.+.+... .+.+..+...+..++
T Consensus 83 --~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l----------------~~~~~~~e~~~~e~~ 144 (239)
T COG1579 83 --SAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDL----------------KERLERLEKNLAEAE 144 (239)
T ss_pred --hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHH
Confidence 13344467888888888888887777777777777777776555221 344444555555555
Q ss_pred HHHHHHHHHHHH
Q 013174 176 KEKSDRLHKVLE 187 (448)
Q Consensus 176 ~ek~~R~~~~~~ 187 (448)
......+..+.+
T Consensus 145 ~~~e~e~~~i~e 156 (239)
T COG1579 145 ARLEEEVAEIRE 156 (239)
T ss_pred HHHHHHHHHHHH
Confidence 555554444443
No 55
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=46.41 E-value=1.4e+02 Score=23.36 Aligned_cols=43 Identities=14% Similarity=0.176 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 013174 45 EKECLDVYKRKVEQAAKSRAQLLQALSDAKIELASLLSALGEK 87 (448)
Q Consensus 45 ~~~~~~~~~~~v~e~~~~k~~l~~~I~~~~~el~~L~~eLg~~ 87 (448)
-+++.++|.+.|+........+.++=..+...+..+...|..-
T Consensus 5 a~Gl~~~l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~ 47 (92)
T PF14712_consen 5 AEGLLSLLEPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKEL 47 (92)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556788888888888888888888888888888888777543
No 56
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=46.20 E-value=5.2e+02 Score=29.84 Aligned_cols=221 Identities=15% Similarity=0.182 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013174 60 AKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICG 139 (448)
Q Consensus 60 ~~~k~~l~~~I~~~~~el~~L~~eLg~~~~~~~~~~~~~~~sL~~~l~~l~~~le~L~~~k~~R~~e~~~l~~~i~~l~~ 139 (448)
+.........+..++..+..|-.-+.+..... +.+-.-|...++.+..++++-.+.-..|..++..++-+.+.+..
T Consensus 754 ~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~r----e~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~ 829 (1174)
T KOG0933|consen 754 EQQIKEKERALKKCEDKISTLEKKMKDAKANR----ERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEK 829 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444445555555555444443322 11111222334555677777777778888888888888888776
Q ss_pred HhcCCCCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccchhhhccCCCCCCC
Q 013174 140 EIAGNLSLGDQAPSVD-ESDLTLKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDLCGVLGMDFFSTVTEVHPSLNDST 218 (448)
Q Consensus 140 ~L~~~~~~~~~~~~~~-~~~lS~~~L~~l~~~l~~L~~ek~~R~~~~~~l~~~I~~L~~~L~~~~~~~~~~i~~sl~~~~ 218 (448)
++........ ... ....-...+..+...+...+.+...-...+......+..+-.+++.-.... +..
T Consensus 830 e~~~~k~~l~---~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~--e~~------- 897 (1174)
T KOG0933|consen 830 EISSLKQQLE---QLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQ--EKC------- 897 (1174)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHH--HHH-------
Confidence 6643211000 000 000012333344444444444444444444444444444444443110000 000
Q ss_pred CCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhccccccccCCCCCCCchHH
Q 013174 219 GVQSKSISNDTLARLAKTVLALKEDKKQRLHKLQELATQLIDLWNLMDTPSEERRLFDHVTCNISAYVDGVTVPGALALD 298 (448)
Q Consensus 219 ~~~~~~ls~~~l~~L~~~~~~L~~~K~~r~~~~~~l~~~l~~LW~~L~~~~ee~~~F~~~~~~i~~s~~~~~~~~~ls~~ 298 (448)
.....-....+.+|...+.+++..+..-.+++..+..+..- + .++..-|...+..+ ++...
T Consensus 898 -~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~w----i---~~ek~~fgk~gt~y-----------Df~~~ 958 (1174)
T KOG0933|consen 898 -LSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKKHEW----I---GDEKRLFGKKGTDY-----------DFESY 958 (1174)
T ss_pred -HHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccc----h---hHHHHhhcCCCCcc-----------ccccC
Confidence 00112234457889999999999998888887777666532 2 26666776654432 23333
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013174 299 LIEQAEVEVERLDQLKA 315 (448)
Q Consensus 299 ~i~~l~~El~RL~~lK~ 315 (448)
+......++.+|++.+.
T Consensus 959 ~p~~are~l~~Lq~k~~ 975 (1174)
T KOG0933|consen 959 DPHEAREELKKLQEKKE 975 (1174)
T ss_pred CHhHHHHHHHHhhHHHH
Confidence 45556666666655544
No 57
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=44.88 E-value=3.1e+02 Score=26.88 Aligned_cols=12 Identities=17% Similarity=0.326 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q 013174 299 LIEQAEVEVERL 310 (448)
Q Consensus 299 ~i~~l~~El~RL 310 (448)
-|..+...+.-|
T Consensus 236 elre~~k~ik~l 247 (294)
T COG1340 236 ELRELEKKIKAL 247 (294)
T ss_pred HHHHHHHHHHHH
Confidence 344444444433
No 58
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=44.63 E-value=3.5e+02 Score=27.40 Aligned_cols=91 Identities=11% Similarity=0.189 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013174 49 LDVYKRKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFS 128 (448)
Q Consensus 49 ~~~~~~~v~e~~~~k~~l~~~I~~~~~el~~L~~eLg~~~~~~~~~~~~~~~sL~~~l~~l~~~le~L~~~k~~R~~e~~ 128 (448)
...+...+.+++...+.+..+|......|.+--.-|+..-.+.. ....+...++..++.++......-.+|.+++.
T Consensus 229 ~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~----~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~ 304 (359)
T PF10498_consen 229 KKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLI----QEYRSAQDELSEVQEKYKQASEGVSERTRELA 304 (359)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH----HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 45566777778888888888888888777776666654321110 01223334444444444444444455555555
Q ss_pred HHHHHHHHHHhHhcC
Q 013174 129 DVQSQIQKICGEIAG 143 (448)
Q Consensus 129 ~l~~~i~~l~~~L~~ 143 (448)
++..+++.+-..|..
T Consensus 305 ~IseeLe~vK~emee 319 (359)
T PF10498_consen 305 EISEELEQVKQEMEE 319 (359)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555444443
No 59
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=43.28 E-value=3.4e+02 Score=26.90 Aligned_cols=86 Identities=21% Similarity=0.301 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH--
Q 013174 104 EQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKSDR-- 181 (448)
Q Consensus 104 ~~l~~l~~~le~L~~~k~~R~~e~~~l~~~i~~l~~~L~~~~~~~~~~~~~~~~~lS~~~L~~l~~~l~~L~~ek~~R-- 181 (448)
..+..++..+..+...-+.+.+++.+++.++..+-..+.. ..++...+...|..+++.....
T Consensus 209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~----------------~~~~k~~l~~eI~e~~~~~~~~r~ 272 (325)
T PF08317_consen 209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEE----------------LEEQKQELLAEIAEAEKIREECRG 272 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3555555555555555555555566666665555433311 2445555666666666555422
Q ss_pred --HHHHHHHHHHHHHHHHHhCCCccc
Q 013174 182 --LHKVLEFVSTVHDLCGVLGMDFFS 205 (448)
Q Consensus 182 --~~~~~~l~~~I~~L~~~L~~~~~~ 205 (448)
...+..+...+..|-...|..+..
T Consensus 273 ~t~~Ev~~Lk~~~~~Le~~~gw~~~~ 298 (325)
T PF08317_consen 273 WTRSEVKRLKAKVDALEKLTGWKIVS 298 (325)
T ss_pred CCHHHHHHHHHHHHHHHHHHCcEEEE
Confidence 245777888888888888876543
No 60
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=42.65 E-value=3e+02 Score=26.05 Aligned_cols=76 Identities=18% Similarity=0.197 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccchhhhccCCCCCCCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 013174 171 LQELQKEKSDRLHKVLEFVSTVHDLCGVLGMDFFSTVTEVHPSLNDSTGVQSKSISNDTLARLAKTVLALKEDKKQRLHK 250 (448)
Q Consensus 171 l~~L~~ek~~R~~~~~~l~~~I~~L~~~L~~~~~~~~~~i~~sl~~~~~~~~~~ls~~~l~~L~~~~~~L~~~K~~r~~~ 250 (448)
-..+..|+..|...+.++.+.+..+...=... .-.+..-.++.+......|..+...|...
T Consensus 163 ~~~i~~Ek~~Re~~~~~l~~~le~~~~~~~~~-------------------~e~f~~~v~~Ei~~lk~~l~~e~~~R~~~ 223 (247)
T PF06705_consen 163 QEKIEKEKNTRESKLSELRSELEEVKRRREKG-------------------DEQFQNFVLEEIAALKNALALESQEREQS 223 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34567899999999999999988877532211 11245556888888888899999999887
Q ss_pred HHHHHHHHHHHHHhc
Q 013174 251 LQELATQLIDLWNLM 265 (448)
Q Consensus 251 ~~~l~~~l~~LW~~L 265 (448)
=.++...|..+-..|
T Consensus 224 Dd~Iv~aln~yt~~l 238 (247)
T PF06705_consen 224 DDDIVQALNHYTKAL 238 (247)
T ss_pred hhHHHHHHHHHHHHH
Confidence 666666665554433
No 61
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=41.40 E-value=5e+02 Score=28.20 Aligned_cols=145 Identities=16% Similarity=0.199 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCCCC----CHHHHHHHHHHHHHHHHH
Q 013174 102 IKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLSLGDQAPSVDESDL----TLKKLDEYQAQLQELQKE 177 (448)
Q Consensus 102 L~~~l~~l~~~le~L~~~k~~R~~e~~~l~~~i~~l~~~L~~~~~~~~~~~~~~~~~l----S~~~L~~l~~~l~~L~~e 177 (448)
....++.|+..++.|.++-..- ....-.+|..|...|...+...+....+- -.+..++++.++..+..+
T Consensus 64 ~~~llK~yQ~EiD~LtkRsk~a-------E~afl~vye~L~eaPDP~pll~sa~~~l~k~~~~~~e~~~lk~~lee~~~e 136 (629)
T KOG0963|consen 64 VNPLLKSYQSEIDNLTKRSKFA-------EAAFLDVYEKLIEAPDPVPLLASAAELLNKQQKASEENEELKEELEEVNNE 136 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh-------HHHHHHHHHHHhhCCCCchHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 3345678888888888774333 33444667777776653211000000111 123455666666666665
Q ss_pred HHH---HHHHHHHHHHHHHHHHHHhCCCccchhhhccCCCCCCCCCccCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 013174 178 KSD---RLHKVLEFVSTVHDLCGVLGMDFFSTVTEVHPSLNDSTGVQSKSISNDTLA-RLAKTVLALKEDKKQRLHKLQE 253 (448)
Q Consensus 178 k~~---R~~~~~~l~~~I~~L~~~L~~~~~~~~~~i~~sl~~~~~~~~~~ls~~~l~-~L~~~~~~L~~~K~~r~~~~~~ 253 (448)
... -...+..+...+..+-..+++...+.++ ++..... ........|.+....+..++..
T Consensus 137 l~~~k~qq~~v~~l~e~l~k~~~~~~~~ie~~a~----------------~~e~~~~q~~~e~e~~L~~~~~~~~~q~~~ 200 (629)
T KOG0963|consen 137 LADLKTQQVTVRNLKERLRKLEQLLEIFIENAAN----------------ETEEKLEQEWAEREAGLKDEEQNLQEQLEE 200 (629)
T ss_pred HhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 532 2334556667777777777765444331 1222222 2444445566666777777777
Q ss_pred HHHHHHHH-HHhcCCCH
Q 013174 254 LATQLIDL-WNLMDTPS 269 (448)
Q Consensus 254 l~~~l~~L-W~~L~~~~ 269 (448)
+-..+..| -..++++-
T Consensus 201 le~ki~~lq~a~~~t~~ 217 (629)
T KOG0963|consen 201 LEKKISSLQSAIEDTQN 217 (629)
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 77777777 44555543
No 62
>PRK11637 AmiB activator; Provisional
Probab=41.32 E-value=4.2e+02 Score=27.34 Aligned_cols=29 Identities=21% Similarity=0.283 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013174 230 LARLAKTVLALKEDKKQRLHKLQELATQL 258 (448)
Q Consensus 230 l~~L~~~~~~L~~~K~~r~~~~~~l~~~l 258 (448)
+..+......|+..+.++.+.+..|...+
T Consensus 200 ~~e~~~~k~~L~~~k~e~~~~l~~L~~~~ 228 (428)
T PRK11637 200 LYEQQAQQQKLEQARNERKKTLTGLESSL 228 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555566666666555555554433
No 63
>PRK14127 cell division protein GpsB; Provisional
Probab=41.05 E-value=2.1e+02 Score=23.73 Aligned_cols=50 Identities=22% Similarity=0.206 Sum_probs=29.8
Q ss_pred hCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 013174 30 VGENDEERDKMLLQIEKECLDVYKRKVEQAAKSRAQLLQALSDAKIELASLLSALGEK 87 (448)
Q Consensus 30 iG~~~~er~~~~~~l~~~~~~~~~~~v~e~~~~k~~l~~~I~~~~~el~~L~~eLg~~ 87 (448)
-||+.++=+..+..+.+.+. .+ ..+...+..++..+..++..+-..+..+
T Consensus 21 RGYd~~EVD~FLd~V~~dye----~l----~~e~~~Lk~e~~~l~~~l~e~~~~~~~~ 70 (109)
T PRK14127 21 RGYDQDEVDKFLDDVIKDYE----AF----QKEIEELQQENARLKAQVDELTKQVSVG 70 (109)
T ss_pred CCCCHHHHHHHHHHHHHHHH----HH----HHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 39999888877766644322 22 2235556666666666666666655543
No 64
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=40.51 E-value=4.4e+02 Score=29.31 Aligned_cols=123 Identities=15% Similarity=0.230 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCC
Q 013174 15 TCSSLLHKLQEIWDEVGENDEERDKMLLQIEKECLDVYKRKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGI 94 (448)
Q Consensus 15 ~~~~~l~~L~~IWdeiG~~~~er~~~~~~l~~~~~~~~~~~v~e~~~~k~~l~~~I~~~~~el~~L~~eLg~~~~~~~~~ 94 (448)
.|..-..+|..=.+.+--+=..++..+..++.++ .-++....+.....+.|+..++.+|++=..|-..|....
T Consensus 542 ~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~-~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEt------ 614 (697)
T PF09726_consen 542 SCRQRRRQLESELKKLRRELKQKEEQIRELESEL-QELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAET------ 614 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHH------
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCC
Q 013174 95 PEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLS 146 (448)
Q Consensus 95 ~~~~~~sL~~~l~~l~~~le~L~~~k~~R~~e~~~l~~~i~~l~~~L~~~~~ 146 (448)
.-.+.|+.-|-.-+.+++-+....-.+-++|.+|+..|.++.+.|....+
T Consensus 615 --riKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~av~p~~~~ 664 (697)
T PF09726_consen 615 --RIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLAVMPSDSY 664 (697)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
No 65
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=40.49 E-value=52 Score=25.06 Aligned_cols=20 Identities=25% Similarity=0.340 Sum_probs=12.5
Q ss_pred CcHHHHHHHHHHHHHHHHHH
Q 013174 100 GTIKEQLAAIAPALEQLWKQ 119 (448)
Q Consensus 100 ~sL~~~l~~l~~~le~L~~~ 119 (448)
.++..++..|+..+..|++.
T Consensus 57 ~~~~~kl~~yr~~l~~lk~~ 76 (79)
T PF05008_consen 57 NQYKSKLRSYRSELKKLKKE 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666554
No 66
>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the V-shaped (V) domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23) and related domains. It belongs to the V_Alix_like superfamily which includes the V domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X/ also known as apoptosis-linked gene-2 interacting protein 1, AIP1), and related domains. HD_PTP interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in cell migration and endosomal trafficking. The related Alix V-domain (belonging to a different family in this superfamily) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addi
Probab=40.03 E-value=3.9e+02 Score=26.63 Aligned_cols=112 Identities=13% Similarity=0.130 Sum_probs=65.5
Q ss_pred HHHHHHHHhCCCCcCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCCC
Q 013174 76 ELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLSLGDQAPSVD 155 (448)
Q Consensus 76 el~~L~~eLg~~~~~~~~~~~~~~~sL~~~l~~l~~~le~L~~~k~~R~~e~~~l~~~i~~l~~~L~~~~~~~~~~~~~~ 155 (448)
+-..+....|..|. +..-..+|...+..|+..++.....=..-...+.....-+.-||.....-....+. ++..
T Consensus 108 ed~~~R~k~G~~~~-----S~~~~~~l~~~~~k~~~~L~~A~~sD~~l~~~~~~~~~~l~lL~~~~~~l~~~iPs-~~~~ 181 (337)
T cd09234 108 QEKEFQEAVGKRGS-----SIAHVTELKRELKKYKEAHEKASQSNTELHKAMNLHIANLKLLAGPLDELQKKLPS-PSLL 181 (337)
T ss_pred HHHHHHHHcCCCCC-----chhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHhhCCC-cccc
Confidence 33445556665321 12225678888888988888887765555556666665555555321100001110 1110
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013174 156 ESDLTLKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVH 193 (448)
Q Consensus 156 ~~~lS~~~L~~l~~~l~~L~~ek~~R~~~~~~l~~~I~ 193 (448)
..+.....+..|+..+..+..-+.+|...+..++..++
T Consensus 182 ~~~~~~~~v~~Lr~ll~kl~~lk~eR~~l~~~Lk~k~~ 219 (337)
T cd09234 182 DRPEDEAIEKELKRILNKVNEMRKQRRSLEQQLRDAIH 219 (337)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 11123466888999999999999999987777766543
No 67
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=38.99 E-value=4e+02 Score=26.42 Aligned_cols=87 Identities=11% Similarity=0.025 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCC----CCCCCCCCCcHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 013174 55 KVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAG----LGIPEKTSGTIKEQLAAIA--PALEQLWKQKEERVKEFS 128 (448)
Q Consensus 55 ~v~e~~~~k~~l~~~I~~~~~el~~L~~eLg~~~~~~----~~~~~~~~~sL~~~l~~l~--~~le~L~~~k~~R~~e~~ 128 (448)
+++--.-...+|.+.|.+.+..+..+-.++-..+.+. -..++.....+..++..++ .+++.-...+.=|++-+.
T Consensus 64 ~LElY~~sC~EL~~~I~egr~~~~~~E~et~~~nPpLF~EY~~a~~d~r~lm~~Qf~lvK~~aRl~ak~~WYeWR~klle 143 (312)
T smart00787 64 LLELYQFSCKELKKYISEGRDLFKEIEEETLINNPPLFKEYFSASPDVKLLMDKQFQLVKTFARLEAKKMWYEWRMKLLE 143 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444566688889999998888888886543221 0012222334445555554 556666666777888888
Q ss_pred HHHHHHHHHHhHh
Q 013174 129 DVQSQIQKICGEI 141 (448)
Q Consensus 129 ~l~~~i~~l~~~L 141 (448)
.++..+..-...|
T Consensus 144 gLk~~L~~~~~~l 156 (312)
T smart00787 144 GLKEGLDENLEGL 156 (312)
T ss_pred HHHHHHHHHHHHH
Confidence 8877776665555
No 68
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=38.91 E-value=4.5e+02 Score=27.04 Aligned_cols=172 Identities=16% Similarity=0.187 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccchhhhccCCCCCCCCCccCCCCHHHHHHHHHHHHHHHH
Q 013174 163 KLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDLCGVLGMDFFSTVTEVHPSLNDSTGVQSKSISNDTLARLAKTVLALKE 242 (448)
Q Consensus 163 ~L~~l~~~l~~L~~ek~~R~~~~~~l~~~I~~L~~~L~~~~~~~~~~i~~sl~~~~~~~~~~ls~~~l~~L~~~~~~L~~ 242 (448)
..+.+-..+..++.+-......+.+++.+..+|-+.|+-..+.. .+.|=+..++|+.
T Consensus 159 ~vnKlm~ki~Klen~t~~kq~~leQLRre~V~lentlEQEqEal-----------------------vN~LwKrmdkLe~ 215 (552)
T KOG2129|consen 159 FVNKLMNKIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQEAL-----------------------VNSLWKRMDKLEQ 215 (552)
T ss_pred HHHHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHHHHH-----------------------HHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 013174 243 DKKQRLHKLQELATQLIDLWNLMDTPSEERRLFDHVTCNISAYVDGVTVPGALALDLIEQAEVEVERLDQLKASRMKEIA 322 (448)
Q Consensus 243 ~K~~r~~~~~~l~~~l~~LW~~L~~~~ee~~~F~~~~~~i~~s~~~~~~~~~ls~~~i~~l~~El~RL~~lK~~~ik~li 322 (448)
+|.--.+++..=...=..--+.-.+|.-..+.-..... -|+.+++||.||...-..--|.
T Consensus 216 ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~------------------hi~~l~~EveRlrt~l~~Aqk~-- 275 (552)
T KOG2129|consen 216 EKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKL------------------HIDKLQAEVERLRTYLSRAQKS-- 275 (552)
T ss_pred HHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHH--
Q ss_pred HHHHHHHHHHHHHcCCCCchHHHHHHhhhhhcCCCCChHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhHHHHHHH
Q 013174 323 FKRQGELEEIFARAHIEIDPVAAREKIMTLIDSGNVEPAELLADMDNQIAKAKEEAHSRKEILDKVEKWMSACEEESWLE 402 (448)
Q Consensus 323 ~~~r~el~elWd~~~~~~e~~~~~~~~~~~~~s~~~~~e~lL~~~E~ei~~lk~~~~~~k~il~~v~~~~~l~~e~~~le 402 (448)
+++.+....+.++.--.+-..-.+-+..-+++++.+|.--..=+
T Consensus 276 ------------------------------------~~ek~~qy~~Ee~~~reen~rlQrkL~~e~erRealcr~lsEse 319 (552)
T KOG2129|consen 276 ------------------------------------YQEKLMQYRAEEVDHREENERLQRKLINELERREALCRMLSESE 319 (552)
T ss_pred ------------------------------------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q ss_pred Hhc-CCchhhhcc
Q 013174 403 DYN-RDENRYNAS 414 (448)
Q Consensus 403 ~~~-~D~~R~~~~ 414 (448)
.+- -|.-||. |
T Consensus 320 sslemdeery~-N 331 (552)
T KOG2129|consen 320 SSLEMDEERYL-N 331 (552)
T ss_pred HHHHHHHHHHH-h
No 69
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=38.55 E-value=4e+02 Score=26.32 Aligned_cols=39 Identities=18% Similarity=0.245 Sum_probs=30.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013174 223 KSISNDTLARLAKTVLALKEDKKQRLHKLQELATQLIDL 261 (448)
Q Consensus 223 ~~ls~~~l~~L~~~~~~L~~~K~~r~~~~~~l~~~l~~L 261 (448)
+..+.++=..|...+..|++.+..-+..+.+...++..|
T Consensus 264 L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~l 302 (306)
T PF04849_consen 264 LQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTL 302 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666677788888888888888888888877777665
No 70
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=38.01 E-value=3e+02 Score=24.70 Aligned_cols=46 Identities=9% Similarity=0.097 Sum_probs=39.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 013174 156 ESDLTLKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDLCGVLGM 201 (448)
Q Consensus 156 ~~~lS~~~L~~l~~~l~~L~~ek~~R~~~~~~l~~~I~~L~~~L~~ 201 (448)
+..+|.+.+..|...+..|+..+..-.+.+..+-.+|..|.+-|-+
T Consensus 73 F~~~~~eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~ 118 (201)
T KOG4603|consen 73 FDMVSDEELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTT 118 (201)
T ss_pred hcCCChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 5578999999999999999999988888888888888888776654
No 71
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=37.60 E-value=6.3e+02 Score=28.27 Aligned_cols=37 Identities=8% Similarity=0.165 Sum_probs=29.1
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013174 222 SKSISNDTLARLAKTVLALKEDKKQRLHKLQELATQL 258 (448)
Q Consensus 222 ~~~ls~~~l~~L~~~~~~L~~~K~~r~~~~~~l~~~l 258 (448)
+..++......++..+.+.-+.-.+-+++++.+...+
T Consensus 679 s~~L~~~Q~~~I~~iL~~~~~~I~~~v~~ik~i~~~~ 715 (717)
T PF10168_consen 679 SIVLSESQKRTIKEILKQQGEEIDELVKQIKNIKKIV 715 (717)
T ss_pred CccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4678999999999999888887777777777666543
No 72
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=37.54 E-value=4.2e+02 Score=26.20 Aligned_cols=41 Identities=20% Similarity=0.319 Sum_probs=29.0
Q ss_pred CccCCCCHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH
Q 013174 220 VQSKSISNDTLARLAKT--------VLALKEDKKQRLHKLQELATQLID 260 (448)
Q Consensus 220 ~~~~~ls~~~l~~L~~~--------~~~L~~~K~~r~~~~~~l~~~l~~ 260 (448)
+.+..+|.++...|... +.+|-.++..-..+|..+...+..
T Consensus 196 ~~~~~vs~e~a~~L~~aG~g~LDvRLkKl~~eke~L~~qv~klk~qLee 244 (302)
T PF09738_consen 196 PKRALVSQEAAQLLESAGDGSLDVRLKKLADEKEELLEQVRKLKLQLEE 244 (302)
T ss_pred CcccccchhhhhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566788887766655 778888887777777777766643
No 73
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=34.04 E-value=4.8e+02 Score=25.87 Aligned_cols=21 Identities=10% Similarity=0.279 Sum_probs=13.7
Q ss_pred cCCCCHHHHHHHHHHHHHHHH
Q 013174 222 SKSISNDTLARLAKTVLALKE 242 (448)
Q Consensus 222 ~~~ls~~~l~~L~~~~~~L~~ 242 (448)
+.+.|..-+..|+..+..|+.
T Consensus 265 ~r~~t~~Ei~~Lk~~~~~Le~ 285 (312)
T smart00787 265 CRGFTFKEIEKLKEQLKLLQS 285 (312)
T ss_pred cCCCCHHHHHHHHHHHHHHHH
Confidence 345677777777777766644
No 74
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.74 E-value=5.9e+02 Score=26.86 Aligned_cols=68 Identities=16% Similarity=0.168 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CC--CCcCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHH
Q 013174 49 LDVYKRKVEQAAKSRAQLLQALSDAKIELASLLSAL-GE--KSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQK 120 (448)
Q Consensus 49 ~~~~~~~v~e~~~~k~~l~~~I~~~~~el~~L~~eL-g~--~~~~~~~~~~~~~~sL~~~l~~l~~~le~L~~~k 120 (448)
++.+...|.++.+.-..-...|+..+..+.+|...| .+ ..... ...+.+|---++.|+.+++.|..+-
T Consensus 357 i~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikqeil----r~~G~~L~~~EE~Lr~Kldtll~~l 427 (508)
T KOG3091|consen 357 INAIGERVTELQKHHADAVAKIEEAKNRHVELSHRILRVMIKQEIL----RKRGYALTPDEEELRAKLDTLLAQL 427 (508)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hccCCcCCccHHHHHHHHHHHHHHh
Confidence 445556667777666666677777777777666543 11 11100 1223344334556666666665543
No 75
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=33.41 E-value=3.6e+02 Score=24.23 Aligned_cols=45 Identities=18% Similarity=0.272 Sum_probs=42.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Q 013174 225 ISNDTLARLAKTVLALKEDKKQRLHKLQELATQLIDLWNLMDTPS 269 (448)
Q Consensus 225 ls~~~l~~L~~~~~~L~~~K~~r~~~~~~l~~~l~~LW~~L~~~~ 269 (448)
+|++.+..|...+..|++.+..-.+.+..+-++|..|-.-|-+|+
T Consensus 76 ~~~eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~ee 120 (201)
T KOG4603|consen 76 VSDEELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEE 120 (201)
T ss_pred CChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHH
Confidence 688999999999999999999999999999999999999999885
No 76
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=32.96 E-value=6e+02 Score=26.64 Aligned_cols=91 Identities=19% Similarity=0.277 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhHhcCCCCCCCCCCCC-CCCCCC-----HHHHHHHH----
Q 013174 103 KEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKI----CGEIAGNLSLGDQAPSV-DESDLT-----LKKLDEYQ---- 168 (448)
Q Consensus 103 ~~~l~~l~~~le~L~~~k~~R~~e~~~l~~~i~~l----~~~L~~~~~~~~~~~~~-~~~~lS-----~~~L~~l~---- 168 (448)
.+-+...+.+|.+-+++|....-+|..++.--..| ..++........ .++ -+..+| .++|..++
T Consensus 396 qe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvs--qclEmdk~LskKeeeverLQ~lkgelE 473 (527)
T PF15066_consen 396 QEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSVS--QCLEMDKTLSKKEEEVERLQQLKGELE 473 (527)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHH--HHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 34455556777777777776666666554432222 222222110000 000 011122 23444444
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013174 169 ----AQLQELQKEKSDRLHKVLEFVSTVHDL 195 (448)
Q Consensus 169 ----~~l~~L~~ek~~R~~~~~~l~~~I~~L 195 (448)
+-|+.|+.||..|-..|.++..+.+..
T Consensus 474 kat~SALdlLkrEKe~~EqefLslqeEfQk~ 504 (527)
T PF15066_consen 474 KATTSALDLLKREKETREQEFLSLQEEFQKH 504 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788899999998888887766543
No 77
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=32.13 E-value=2.4e+02 Score=26.08 Aligned_cols=41 Identities=17% Similarity=0.248 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 013174 162 KKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDLCGVLGMD 202 (448)
Q Consensus 162 ~~L~~l~~~l~~L~~ek~~R~~~~~~l~~~I~~L~~~L~~~ 202 (448)
..|.-|+..+...+.|.+.+...+.+++..+...-..|...
T Consensus 10 GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~ 50 (202)
T PF06818_consen 10 GEISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNK 50 (202)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Confidence 45778999999999999999999999999999998888753
No 78
>TIGR02833 spore_III_AB stage III sporulation protein AB. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage III sporulation protein AB.
Probab=31.82 E-value=3.1e+02 Score=24.46 Aligned_cols=92 Identities=9% Similarity=0.124 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC---CccchhhhccCCCCCCCCCccCCCCHHHHHHHHHHHHHHHHHHHHHH-HH
Q 013174 175 QKEKSDRLHKVLEFVSTVHDLCGVLGM---DFFSTVTEVHPSLNDSTGVQSKSISNDTLARLAKTVLALKEDKKQRL-HK 250 (448)
Q Consensus 175 ~~ek~~R~~~~~~l~~~I~~L~~~L~~---~~~~~~~~i~~sl~~~~~~~~~~ls~~~l~~L~~~~~~L~~~K~~r~-~~ 250 (448)
-..+.+|..++.++...+..|-+++.. |..+.+..+. ...=..+...+....+.-..+. ..
T Consensus 20 a~~~~~R~~~L~~l~~~l~~L~~EI~Y~~tpL~ea~~~i~---------------~~~~~~~~~~f~~~a~~L~~~~g~s 84 (170)
T TIGR02833 20 ANRFKERPRQLRQLINALQSLEAEIVYGHTPLPEAFKKIA---------------LKSPKPVNLLFESASERLKEGEGLT 84 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHH---------------hhcchhHHHHHHHHHHHHHhCCCCC
Confidence 345788999999999999999999985 3333332211 1111112222222222222221 34
Q ss_pred HHH-HHHHHHHHHHhcCCCHHHHHHHHHHhcc
Q 013174 251 LQE-LATQLIDLWNLMDTPSEERRLFDHVTCN 281 (448)
Q Consensus 251 ~~~-l~~~l~~LW~~L~~~~ee~~~F~~~~~~ 281 (448)
+.+ +...+..+|..+..+.++.+.+...-..
T Consensus 85 ~~~~w~~~~~~~~~~~~L~~~d~eiL~~lG~~ 116 (170)
T TIGR02833 85 VYEAWKKALNEVWKQTALQKSEKEILLQFGKT 116 (170)
T ss_pred HHHHHHHHHHHhhhccCCCHHHHHHHHHHHHH
Confidence 445 7778889999999999998888765443
No 79
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=31.30 E-value=4.5e+02 Score=24.70 Aligned_cols=44 Identities=25% Similarity=0.232 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Q 013174 228 DTLARLAKTVLALKEDKKQRLHKLQELATQLIDLWNLMDTPSEE 271 (448)
Q Consensus 228 ~~l~~L~~~~~~L~~~K~~r~~~~~~l~~~l~~LW~~L~~~~ee 271 (448)
+.|..|.....+|++....+.-++..|..+...|-..+..|.++
T Consensus 170 erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~El~e~~ 213 (290)
T COG4026 170 ERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVELPEEE 213 (290)
T ss_pred HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccccchHHH
Confidence 45777888888888887777778877888877777777777654
No 80
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=31.28 E-value=3.2e+02 Score=23.01 Aligned_cols=30 Identities=13% Similarity=0.173 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013174 51 VYKRKVEQAAKSRAQLLQALSDAKIELASL 80 (448)
Q Consensus 51 ~~~~~v~e~~~~k~~l~~~I~~~~~el~~L 80 (448)
.++..+......|+.+..+|-.+..+...+
T Consensus 34 ~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~ 63 (120)
T PF12325_consen 34 SLQEELARLEAERDELREEIVKLMEENEEL 63 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555444443
No 81
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=31.08 E-value=5.4e+02 Score=25.57 Aligned_cols=120 Identities=15% Similarity=0.209 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCC
Q 013174 68 QALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLSL 147 (448)
Q Consensus 68 ~~I~~~~~el~~L~~eLg~~~~~~~~~~~~~~~sL~~~l~~l~~~le~L~~~k~~R~~e~~~l~~~i~~l~~~L~~~~~~ 147 (448)
..+..-..+...+....|...... +.+..-..++...+..|+..++....-=..-...|.....-+.-|| +++..
T Consensus 98 ~~L~~E~~ed~~~R~k~g~~~w~~-~~S~~~~~~l~~~~~k~~~~L~~A~~sD~~l~~~~~~~~~~l~lL~----~~~~~ 172 (342)
T cd08915 98 ELLEEEAAEDDQLRAKFGTLRWRR-PSSDEAAKELYEKVTKLRGYLEQASNSDNEVLQCYESIDPNLVLLC----GGYKE 172 (342)
T ss_pred HHHHHHHHhhHHHHHHhCcccCCC-CChHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhc----CChHH
Confidence 333444445556666777643322 1022234577888888888888877766555555665555555544 33211
Q ss_pred CCC-CCCCCCC-CCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013174 148 GDQ-APSVDES-DLT-LKKLDEYQAQLQELQKEKSDRLHKVLEFVSTV 192 (448)
Q Consensus 148 ~~~-~~~~~~~-~lS-~~~L~~l~~~l~~L~~ek~~R~~~~~~l~~~I 192 (448)
... .|+.... +++ ...+..++..+..+..-+.+|...+.++...+
T Consensus 173 l~~~~Ps~~~~~~~~~~~~v~~Lr~~l~~l~~lk~eR~~~~~~lk~~~ 220 (342)
T cd08915 173 LKAFIPSPYPALDPEVSEVVSSLRPLLNEVSELEKERERFISELEIKS 220 (342)
T ss_pred HHHhCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 100 1111111 112 36788899999999999999999888886654
No 82
>PF12302 DUF3629: Protein of unknown function (DUF3629); InterPro: IPR022079 This family of proteins is found in eukaryotes. Proteins in this family are typically between 256 and 292 amino acids in length.
Probab=31.06 E-value=1.1e+02 Score=27.72 Aligned_cols=64 Identities=13% Similarity=0.256 Sum_probs=44.8
Q ss_pred HHHHHHHHHcCCCCchHHHHHHhhhhhcCCCCChHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Q 013174 327 GELEEIFARAHIEIDPVAAREKIMTLIDSGNVEPAELLADMDNQIAKAKEEAHSRKEILDKVEKW 391 (448)
Q Consensus 327 ~el~elWd~~~~~~e~~~~~~~~~~~~~s~~~~~e~lL~~~E~ei~~lk~~~~~~k~il~~v~~~ 391 (448)
..|.++|....++..+.+....+-++-++-+.++++++.+++. |.+.++.-...+-+..++++-
T Consensus 50 driq~mwq~srigakeqnslrgyqpan~Dvn~ds~evISALdk-VRrieERRkiqnKMr~LMeeQ 113 (253)
T PF12302_consen 50 DRIQEMWQRSRIGAKEQNSLRGYQPANSDVNTDSEEVISALDK-VRRIEERRKIQNKMRALMEEQ 113 (253)
T ss_pred HHHHHHHHHhccchhhhccccccCCCccccccchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999766554443333332224578889988886 777777777777777777643
No 83
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=30.69 E-value=3.4e+02 Score=28.13 Aligned_cols=80 Identities=13% Similarity=0.266 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013174 55 KVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQI 134 (448)
Q Consensus 55 ~v~e~~~~k~~l~~~I~~~~~el~~L~~eLg~~~~~~~~~~~~~~~sL~~~l~~l~~~le~L~~~k~~R~~e~~~l~~~i 134 (448)
.|-+....+.++..++..++.+.+.+..+++...... .....|..+.+.+..++..+.. ++..+..++
T Consensus 29 ~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~-----~~~~~l~~~~~~l~~~~~~~~~-------~~~~~~~~~ 96 (425)
T PRK05431 29 ELLELDEERRELQTELEELQAERNALSKEIGQAKRKG-----EDAEALIAEVKELKEEIKALEA-------ELDELEAEL 96 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----CcHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Confidence 3445666788889999999999999999997632111 1122355555555555555544 477778888
Q ss_pred HHHHhHhcCCCC
Q 013174 135 QKICGEIAGNLS 146 (448)
Q Consensus 135 ~~l~~~L~~~~~ 146 (448)
..++..|+--++
T Consensus 97 ~~~~~~iPN~~~ 108 (425)
T PRK05431 97 EELLLRIPNLPH 108 (425)
T ss_pred HHHHHhCCCCCC
Confidence 887777765443
No 84
>PRK08307 stage III sporulation protein SpoAB; Provisional
Probab=30.49 E-value=3.1e+02 Score=24.46 Aligned_cols=92 Identities=10% Similarity=0.125 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC---CccchhhhccCCCCCCCCCccCCCCHHHHHHHHHHHHHHHHHHHHHH-HH
Q 013174 175 QKEKSDRLHKVLEFVSTVHDLCGVLGM---DFFSTVTEVHPSLNDSTGVQSKSISNDTLARLAKTVLALKEDKKQRL-HK 250 (448)
Q Consensus 175 ~~ek~~R~~~~~~l~~~I~~L~~~L~~---~~~~~~~~i~~sl~~~~~~~~~~ls~~~l~~L~~~~~~L~~~K~~r~-~~ 250 (448)
-..+.+|..++.++...+..|-+++.. |..+.+..+. ...=..+...+....+.-..+. ..
T Consensus 21 a~~~~~R~~~L~~l~~~l~~L~~EI~Y~~tpL~ea~~~i~---------------~~~~~~~~~~f~~~a~~L~~~~g~s 85 (171)
T PRK08307 21 AKRYKERPRQLRELKAALQSLEAEIMYGHTPLPEALENIA---------------KQSPKPISTLFQRFSERLESGEGET 85 (171)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHH---------------HccchhHHHHHHHHHHHHHhCCCCC
Confidence 345788999999999999999999875 3333332211 0000111222222222111211 33
Q ss_pred HHH-HHHHHHHHHHhcCCCHHHHHHHHHHhcc
Q 013174 251 LQE-LATQLIDLWNLMDTPSEERRLFDHVTCN 281 (448)
Q Consensus 251 ~~~-l~~~l~~LW~~L~~~~ee~~~F~~~~~~ 281 (448)
+.+ +...+..+|..+..+.++.+.+...-..
T Consensus 86 ~~eaw~~~~~~~~~~~~L~~~d~eiL~~lg~~ 117 (171)
T PRK08307 86 AYEAWEKALEENWKNTALKKEDIEILLQFGKT 117 (171)
T ss_pred HHHHHHHHHHHhhhccCCCHHHHHHHHHHHHH
Confidence 444 7778899999999999998888765443
No 85
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=30.15 E-value=9.3e+02 Score=28.02 Aligned_cols=27 Identities=19% Similarity=0.201 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013174 235 KTVLALKEDKKQRLHKLQELATQLIDL 261 (448)
Q Consensus 235 ~~~~~L~~~K~~r~~~~~~l~~~l~~L 261 (448)
..+..+.........++..+...+..+
T Consensus 866 ~~~~~l~~~~~~~~~~~~~l~~~~~~~ 892 (1179)
T TIGR02168 866 ELIEELESELEALLNERASLEEALALL 892 (1179)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 86
>PRK11637 AmiB activator; Provisional
Probab=29.89 E-value=6.3e+02 Score=26.01 Aligned_cols=41 Identities=17% Similarity=0.203 Sum_probs=22.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 013174 101 TIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEI 141 (448)
Q Consensus 101 sL~~~l~~l~~~le~L~~~k~~R~~e~~~l~~~i~~l~~~L 141 (448)
.+.++++.++.++..+.+...+-..+...+..++..+-..|
T Consensus 44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi 84 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAI 84 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666665555555554455555555555544444
No 87
>KOG3341 consensus RNA polymerase II transcription factor complex subunit [Transcription]
Probab=29.66 E-value=1.6e+02 Score=27.49 Aligned_cols=48 Identities=21% Similarity=0.374 Sum_probs=41.2
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCC
Q 013174 100 GTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLSL 147 (448)
Q Consensus 100 ~sL~~~l~~l~~~le~L~~~k~~R~~e~~~l~~~i~~l~~~L~~~~~~ 147 (448)
..+..++..++..|+++-++..+=+++-.+.+.+.+.+|..+|.+|..
T Consensus 32 ~q~~~Ql~~f~~~LeeFA~kH~~ei~knsqFR~~Fq~Mca~IGvDPla 79 (249)
T KOG3341|consen 32 VQMSKQLEVFQEALEEFARKHKTEIRKNSQFRNQFQEMCASIGVDPLA 79 (249)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHcCCCccc
Confidence 345567888888888888888888889999999999999999999864
No 88
>PRK09039 hypothetical protein; Validated
Probab=29.46 E-value=5.9e+02 Score=25.53 Aligned_cols=131 Identities=17% Similarity=0.141 Sum_probs=70.7
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 013174 100 GTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKS 179 (448)
Q Consensus 100 ~sL~~~l~~l~~~le~L~~~k~~R~~e~~~l~~~i~~l~~~L~~~~~~~~~~~~~~~~~lS~~~L~~l~~~l~~L~~ek~ 179 (448)
.++-.++..+...|...+....+-..++..+..+|..|-..|+.-...+ +-+..+....+..++.|+.+.+
T Consensus 112 ~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L---------~~ae~~~~~~~~~i~~L~~~L~ 182 (343)
T PRK09039 112 AAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAAL---------DASEKRDRESQAKIADLGRRLN 182 (343)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777888888888888888888888888888776654432111 1234444555556665555554
Q ss_pred HH----HHHHHHHHHHHHHH-HHHhCCCccchh-hh--ccCCCCCCCCCccCCCCHHHHHHHHHHHHHH
Q 013174 180 DR----LHKVLEFVSTVHDL-CGVLGMDFFSTV-TE--VHPSLNDSTGVQSKSISNDTLARLAKTVLAL 240 (448)
Q Consensus 180 ~R----~~~~~~l~~~I~~L-~~~L~~~~~~~~-~~--i~~sl~~~~~~~~~~ls~~~l~~L~~~~~~L 240 (448)
.- ...+..++..+..= ...+|....-.+ .. +.++ .-.....+..|++.....|.....-|
T Consensus 183 ~a~~~~~~~l~~~~~~~~~~l~~~~~~~~~iri~g~~~~~~~-~vlF~~gsa~L~~~~~~~L~~ia~~l 250 (343)
T PRK09039 183 VALAQRVQELNRYRSEFFGRLREILGDREGIRIVGDRFVFQS-EVLFPTGSAELNPEGQAEIAKLAAAL 250 (343)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhCCCCCcEEECCEEEecC-CceeCCCCcccCHHHHHHHHHHHHHH
Confidence 44 33445555555322 345554221111 00 0000 00122345567777766666655544
No 89
>COG4396 Mu-like prophage host-nuclease inhibitor protein Gam [General function prediction only]
Probab=28.76 E-value=3.5e+02 Score=23.31 Aligned_cols=59 Identities=17% Similarity=0.288 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013174 60 AKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICG 139 (448)
Q Consensus 60 ~~~k~~l~~~I~~~~~el~~L~~eLg~~~~~~~~~~~~~~~sL~~~l~~l~~~le~L~~~k~~R~~e~~~l~~~i~~l~~ 139 (448)
..+......+|-+++.+...|-.++|+..... ...|-+++..|..+ +..|...++.+|.
T Consensus 17 ~eeV~~~Ir~iGDlqRE~~RLeTemnDk~aai--------------~e~Yapq~~~lk~E-------I~~L~k~vq~yCe 75 (170)
T COG4396 17 KEEVTAFIRQIGDLQREVKRLETEMNDKKAAI--------------EEEYAPQAAPLKAE-------IMSLTKRVQAYCE 75 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchHhHH--------------HHHhhhhhHHHHHH-------HHHHHHHHHHHHH
Confidence 34566778889999999999999999876432 24566777777665 8888888899987
No 90
>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the V-shaped (V) domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23) and related domains. It belongs to the V_Alix_like superfamily which includes the V domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X/ also known as apoptosis-linked gene-2 interacting protein 1, AIP1), and related domains. HD_PTP interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in cell migration and endosomal trafficking. The related Alix V-domain (belonging to a different family in this superfamily) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addi
Probab=28.65 E-value=6e+02 Score=25.32 Aligned_cols=194 Identities=14% Similarity=0.126 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCC-CCCC-CCCCCcHHHHHHHHHHH----------HHHH
Q 013174 49 LDVYKRKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAG-LGIP-EKTSGTIKEQLAAIAPA----------LEQL 116 (448)
Q Consensus 49 ~~~~~~~v~e~~~~k~~l~~~I~~~~~el~~L~~eLg~~~~~~-~~~~-~~~~~sL~~~l~~l~~~----------le~L 116 (448)
.++|..+.++.-.. ....+...-.++....+.|+.|.... ...+ ..-|.+|.++-..+..+ +..|
T Consensus 8 ~S~Y~E~ka~lvr~---~~~~~e~~~~~l~~~L~slnLP~~~~~~~~~~~~lP~~l~~~~~~i~~~~~gi~~l~~~~~~L 84 (337)
T cd09234 8 SSLYSEEKAKLLRE---VVSEIEDKDEELDQFLSSLQLDPLNVMDMDGQFELPQDLVERCAALSVRPDTIKNLVEAMGEL 84 (337)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhcCCChhhhhccCCCCCCCHHHHHHHHHHhcCCcccchHHHHHHHH
Confidence 56777766553332 37778888889999999999997522 0001 12244565555555422 2222
Q ss_pred HHH---HHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q 013174 117 WKQ---KEERVKEFSDVQSQIQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKSD---RLHKVLEFVS 190 (448)
Q Consensus 117 ~~~---k~~R~~e~~~l~~~i~~l~~~L~~~~~~~~~~~~~~~~~lS~~~L~~l~~~l~~L~~ek~~---R~~~~~~l~~ 190 (448)
... -..-+.+...+......=|..+-.. +|. ..+|..-...|+..+..++.-... -=..+.....
T Consensus 85 ~~l~~~~~~~L~e~~~~L~~E~~ed~~~R~k--~G~-------~~~S~~~~~~l~~~~~k~~~~L~~A~~sD~~l~~~~~ 155 (337)
T cd09234 85 SDVYQDVEAMLNEIESLLEEEELQEKEFQEA--VGK-------RGSSIAHVTELKRELKKYKEAHEKASQSNTELHKAMN 155 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--cCC-------CCCchhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 222 2222222222222222222222111 111 012222233344444444332211 1222333444
Q ss_pred HHHHHHHHhCCCccchhhhccCCCCCCCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013174 191 TVHDLCGVLGMDFFSTVTEVHPSLNDSTGVQSKSISNDTLARLAKTVLALKEDKKQRLHKLQELATQLI 259 (448)
Q Consensus 191 ~I~~L~~~L~~~~~~~~~~i~~sl~~~~~~~~~~ls~~~l~~L~~~~~~L~~~K~~r~~~~~~l~~~l~ 259 (448)
........|+.+..... ...|+.... . .+-....+..|+..+.+++..+.+|..-+..|+..++
T Consensus 156 ~~~~~l~lL~~~~~~l~-~~iPs~~~~---~-~~~~~~~v~~Lr~ll~kl~~lk~eR~~l~~~Lk~k~~ 219 (337)
T cd09234 156 LHIANLKLLAGPLDELQ-KKLPSPSLL---D-RPEDEAIEKELKRILNKVNEMRKQRRSLEQQLRDAIH 219 (337)
T ss_pred HHHHHHHHHcCcHHHHH-hhCCCcccc---C-CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44445566655433222 223432111 1 1234567999999999999999999999988877653
No 91
>PF10243 MIP-T3: Microtubule-binding protein MIP-T3; InterPro: IPR018799 This entry represents a protein which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), and is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved []. ; PDB: 2EQO_A.
Probab=28.52 E-value=19 Score=38.60 Aligned_cols=36 Identities=25% Similarity=0.378 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013174 158 DLTLKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVH 193 (448)
Q Consensus 158 ~lS~~~L~~l~~~l~~L~~ek~~R~~~~~~l~~~I~ 193 (448)
..|.+.++-|+.+|..|+.....-..++..++..|.
T Consensus 491 ~~t~~~~~pl~~~L~ele~~I~~~~~~i~~~ka~Il 526 (539)
T PF10243_consen 491 SITDEALEPLKAQLAELEQQIKDQQDKICAVKANIL 526 (539)
T ss_dssp ------------------------------------
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777888888888888888877777777777664
No 92
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=28.51 E-value=6.2e+02 Score=26.90 Aligned_cols=172 Identities=15% Similarity=0.093 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccchhhhccCCCCCCCCCccCCCCHHHHHHHHHHHHHH
Q 013174 161 LKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDLCGVLGMDFFSTVTEVHPSLNDSTGVQSKSISNDTLARLAKTVLAL 240 (448)
Q Consensus 161 ~~~L~~l~~~l~~L~~ek~~R~~~~~~l~~~I~~L~~~L~~~~~~~~~~i~~sl~~~~~~~~~~ls~~~l~~L~~~~~~L 240 (448)
.++|......+..++++.....+....+.+++-+|.+.|+ |..+.+..+. ........-.....+.=..+..++..+
T Consensus 204 ~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~-d~qkk~k~~~--~Ekeel~~~Lq~~~da~~ql~aE~~El 280 (596)
T KOG4360|consen 204 VKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLV-DLQKKIKYLR--HEKEELDEHLQAYKDAQRQLTAELEEL 280 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHH--HHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5777777788888888888888888888888888888888 3333221100 000000001223334446788888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhccccccccCCCCCCCchHHHHHH-------HHHHHHHH---
Q 013174 241 KEDKKQRLHKLQELATQLIDLWNLMDTPSEERRLFDHVTCNISAYVDGVTVPGALALDLIEQ-------AEVEVERL--- 310 (448)
Q Consensus 241 ~~~K~~r~~~~~~l~~~l~~LW~~L~~~~ee~~~F~~~~~~i~~s~~~~~~~~~ls~~~i~~-------l~~El~RL--- 310 (448)
++.+.+-++.+.+-..+|..|-..=+--...+......+ +-+ +-++...-|.. +..|..-+
T Consensus 281 eDkyAE~m~~~~EaeeELk~lrs~~~p~~~s~~~~~~~~---~fp------~~~~aae~i~lt~r~~~qldee~s~~~t~ 351 (596)
T KOG4360|consen 281 EDKYAECMQMLHEAEEELKCLRSCDAPKLISQEALSHGH---HFP------QLSLAAEKIELTMRKNLQLDEEASQLDTL 351 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHhhh---hCC------hhhHHHHHHHHhhhhhhccccccccCCcc
Confidence 999999999999988888888765444444443333221 000 01111111111 11111111
Q ss_pred ---HHHHHHhHHHHHHHHHHHHHHHHHHcCCCCchHH
Q 013174 311 ---DQLKASRMKEIAFKRQGELEEIFARAHIEIDPVA 344 (448)
Q Consensus 311 ---~~lK~~~ik~li~~~r~el~elWd~~~~~~e~~~ 344 (448)
++++.--.-+-|......+.++++.+-++.+.+.
T Consensus 352 ~~~eq~~I~e~ve~i~~ts~q~a~l~~~l~i~~~ny~ 388 (596)
T KOG4360|consen 352 EDEEQKRIFETVEQINETSQQMAELPEVLVIPGSNYS 388 (596)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhh
Confidence 2233333345567788888899998888876543
No 93
>PLN02678 seryl-tRNA synthetase
Probab=28.34 E-value=3.7e+02 Score=28.15 Aligned_cols=80 Identities=13% Similarity=0.118 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013174 55 KVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQI 134 (448)
Q Consensus 55 ~v~e~~~~k~~l~~~I~~~~~el~~L~~eLg~~~~~~~~~~~~~~~sL~~~l~~l~~~le~L~~~k~~R~~e~~~l~~~i 134 (448)
.|-+....+..+..++..++++.+.+..+++.-.... .....|..+...|..++..+. .++..+..++
T Consensus 34 ~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~-----~~~~~l~~~~~~Lk~ei~~le-------~~~~~~~~~l 101 (448)
T PLN02678 34 EVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAK-----EDATELIAETKELKKEITEKE-------AEVQEAKAAL 101 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-----CcHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 3445666777888999999999999999997622111 112234444455555555544 4477788888
Q ss_pred HHHHhHhcCCCC
Q 013174 135 QKICGEIAGNLS 146 (448)
Q Consensus 135 ~~l~~~L~~~~~ 146 (448)
..++..|.-.|+
T Consensus 102 ~~~~~~iPNi~~ 113 (448)
T PLN02678 102 DAKLKTIGNLVH 113 (448)
T ss_pred HHHHHhCCCCCC
Confidence 888877766554
No 94
>PHA03418 hypothetical E4 protein; Provisional
Probab=28.30 E-value=1.4e+02 Score=27.90 Aligned_cols=40 Identities=20% Similarity=0.367 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Q 013174 227 NDTLARLAKTVLALKEDKKQRLHKLQELATQLIDLWNLMDTPS 269 (448)
Q Consensus 227 ~~~l~~L~~~~~~L~~~K~~r~~~~~~l~~~l~~LW~~L~~~~ 269 (448)
...|..+...+.+.+....+-+ +++...|..+|.+|+||+
T Consensus 191 ~~LL~~VA~lL~kWE~~f~qLV---~~I~~DL~dYW~kL~tPQ 230 (230)
T PHA03418 191 HGLLGTVACLLGTWEESFRQLV---EDIQEDLDDYWRKLGIPQ 230 (230)
T ss_pred hhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhcCCC
Confidence 4677888888888877776543 347789999999999984
No 95
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=28.12 E-value=7.8e+02 Score=26.48 Aligned_cols=21 Identities=19% Similarity=0.567 Sum_probs=11.9
Q ss_pred HHHHHHHHHHhHHHHHHHHhc
Q 013174 385 LDKVEKWMSACEEESWLEDYN 405 (448)
Q Consensus 385 l~~v~~~~~l~~e~~~le~~~ 405 (448)
....+.+.....+..|=++..
T Consensus 447 i~~Le~r~~~~~~~~~~~~~~ 467 (546)
T PF07888_consen 447 IERLEQRLDKVADEKWKEAAA 467 (546)
T ss_pred HHHHHHHHHHhhhhhhhcccc
Confidence 344445555666777755554
No 96
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=27.52 E-value=2.9e+02 Score=24.88 Aligned_cols=65 Identities=18% Similarity=0.306 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCCCCCcHHHHHHHHHHHHHHHHHH
Q 013174 43 QIEKECLDVYKRKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQ 119 (448)
Q Consensus 43 ~l~~~~~~~~~~~v~e~~~~k~~l~~~I~~~~~el~~L~~eLg~~~~~~~~~~~~~~~sL~~~l~~l~~~le~L~~~ 119 (448)
++.+++...+...-.+.+.-..++..+|+.+..+++.|-.... ...+|+.+-..|..+|+.+.+.
T Consensus 102 QVqqeL~~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~------------~~k~LrnKa~~L~~eL~~F~~~ 166 (171)
T PF04799_consen 102 QVQQELSSTFARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQS------------KSKTLRNKANWLESELERFQEQ 166 (171)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666667777777777777777777766544321 1334555555555555555443
No 97
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=27.42 E-value=8.5e+02 Score=26.70 Aligned_cols=207 Identities=13% Similarity=0.143 Sum_probs=112.5
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 013174 100 GTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKS 179 (448)
Q Consensus 100 ~sL~~~l~~l~~~le~L~~~k~~R~~e~~~l~~~i~~l~~~L~~~~~~~~~~~~~~~~~lS~~~L~~l~~~l~~L~~ek~ 179 (448)
..+..++..+..++..+..+...-..++..+..++..+...+........ . ...-..+..+.+...+..++.++.
T Consensus 205 ~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~---~--~GG~~~~~r~~Le~ei~~le~e~~ 279 (650)
T TIGR03185 205 SSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFR---S--EGGDLFEEREQLERQLKEIEAARK 279 (650)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H--hcchHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777777777666777777776666655532211000 0 001234555667777777777766
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCccchhhhccCCCCCCCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 013174 180 DRLHKVLEFVSTVHDLCGVLGMDFFSTVTEVHPSLNDSTGVQSKSISNDTLARLAKTVLALKEDKKQRLHKLQE-LATQL 258 (448)
Q Consensus 180 ~R~~~~~~l~~~I~~L~~~L~~~~~~~~~~i~~sl~~~~~~~~~~ls~~~l~~L~~~~~~L~~~K~~r~~~~~~-l~~~l 258 (448)
++.+.+..+.+ . .-|+.+....+..+...+...+.-+ +.+.+.+ +....
T Consensus 280 e~~~~l~~l~~-------~---------------------~~p~~l~~~ll~~~~~q~~~e~~~~--~~~~~~~~l~~~~ 329 (650)
T TIGR03185 280 ANRAQLRELAA-------D---------------------PLPLLLIPNLLDSTKAQLQKEEQSQ--QNQLTQEELEERD 329 (650)
T ss_pred HHHHHHHHHhc-------c---------------------cCCHhhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 65553332211 1 1245677778888888877765333 3343444 44777
Q ss_pred HHHHHhc---CCCHHHHHHHHHHhcc-ccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHH
Q 013174 259 IDLWNLM---DTPSEERRLFDHVTCN-ISAYVDGVTVPGALALDLIEQAEVEVERLDQLKASRMKEI---AFKRQGELEE 331 (448)
Q Consensus 259 ~~LW~~L---~~~~ee~~~F~~~~~~-i~~s~~~~~~~~~ls~~~i~~l~~El~RL~~lK~~~ik~l---i~~~r~el~e 331 (448)
..||..+ ..+....+........ ..+...+..-+.+++...+..+..-++.+..-....+..+ +..+..+|.+
T Consensus 330 ~~i~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~el~~ 409 (650)
T TIGR03185 330 KELLESLPKLALPAEHVKEIAAELAEIDKPATTDSEIPHRLSGSELTQLEVLIQQVKRELQDAKSQLLKELRELEEELAE 409 (650)
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHhhcccccccccccccCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 7777766 5555443333332111 1111122223345566666666665555542222233333 3456778888
Q ss_pred HHHHcCCCCc
Q 013174 332 IFARAHIEID 341 (448)
Q Consensus 332 lWd~~~~~~e 341 (448)
+=.++.-.++
T Consensus 410 l~~~l~~~~~ 419 (650)
T TIGR03185 410 VDKKISTIPS 419 (650)
T ss_pred HHHHHhcCCC
Confidence 8888876654
No 98
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=27.00 E-value=7.6e+02 Score=25.96 Aligned_cols=285 Identities=15% Similarity=0.182 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013174 59 AAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKIC 138 (448)
Q Consensus 59 ~~~~k~~l~~~I~~~~~el~~L~~eLg~~~~~~~~~~~~~~~sL~~~l~~l~~~le~L~~~k~~R~~e~~~l~~~i~~l~ 138 (448)
.+..+.+=...++.+..+++.|..++-...-.. +..+..++......++.+-....+=..-+..-...+..++
T Consensus 2 ~e~rr~rh~~~~~~~~~e~~~i~~e~e~~i~~~-------~~~l~~~l~~~d~~i~~~~~~l~~d~~l~~~~~~~l~~~w 74 (473)
T PF14643_consen 2 AERRRERHEKALESFHEELASISEEVEPLILEA-------GEDLKQKLAESDEEIEEIFSKLEDDSALLEYSIQDLLELW 74 (473)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhHHHHHHHHHHhcCchhHHHhhHHHHHHHH
Q ss_pred hHhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccchhhhccCCCCCCC
Q 013174 139 GEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDLCGVLGMDFFSTVTEVHPSLNDST 218 (448)
Q Consensus 139 ~~L~~~~~~~~~~~~~~~~~lS~~~L~~l~~~l~~L~~ek~~R~~~~~~l~~~I~~L~~~L~~~~~~~~~~i~~sl~~~~ 218 (448)
+.+... +..+-..++..-..|..--.+|..++................-....+..+.
T Consensus 75 ~~v~~~---------------~~~r~~~I~~l~~~L~~~E~~R~~~l~~~l~~~~~~L~~ia~~~~~dv~rli------- 132 (473)
T PF14643_consen 75 DEVAEH---------------SQKRKQWIKELDEDLEELEKERADKLKKVLRKYVEILEKIAHLLPPDVERLI------- 132 (473)
T ss_pred HHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHH-------
Q ss_pred CCccCCCCHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhccccccccCCCCCCCc
Q 013174 219 GVQSKSISNDTLA---RLAKTVLALKEDKKQRLHKLQELATQLIDLWNLMDTPSEERRLFDHVTCNISAYVDGVTVPGAL 295 (448)
Q Consensus 219 ~~~~~~ls~~~l~---~L~~~~~~L~~~K~~r~~~~~~l~~~l~~LW~~L~~~~ee~~~F~~~~~~i~~s~~~~~~~~~l 295 (448)
+.....+....+. .+.+++.+|..---++......-+.....=|..+.. ..-...|...... ..+..|...
T Consensus 133 ~~ea~~iN~~ll~Nrra~a~L~~~L~~~~~~~e~~~~~~w~~~~~~Wr~l~~-~~~i~~f~~~~~s-----~~~~~P~~~ 206 (473)
T PF14643_consen 133 EKEAMEINQALLGNRRAYADLFANLMEAELQRELSYRRRWQDRVDDWRALRH-ERAIQEFREFMAS-----EEFQNPPER 206 (473)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHhCc-----cccCCChHH
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHHHHcCCCCch-HHHHHHhhhhhcCCCCChHHHHHHHHH
Q 013174 296 ALDLIEQAEVEVERLDQLKASRMKEIA-----FKRQGELEEIFARAHIEIDP-VAAREKIMTLIDSGNVEPAELLADMDN 369 (448)
Q Consensus 296 s~~~i~~l~~El~RL~~lK~~~ik~li-----~~~r~el~elWd~~~~~~e~-~~~~~~~~~~~~s~~~~~e~lL~~~E~ 369 (448)
...++.+..+...+..-+.+.+..+- ......+.+||..+..-... ......++..+.. .-+.+=..+..
T Consensus 207 -~~~~e~~~~~Q~~l~~~r~~~L~~l~~l~Pp~~t~~~v~eW~~~l~~l~~~~d~~~~~~~~~lr~---~~E~~~~ec~~ 282 (473)
T PF14643_consen 207 -KQLLEQMRKEQVDLHEKRLELLQSLCDLLPPNLTKEKVEEWYASLNALNEQIDEYHQQCMEKLRA---LYEKICQECLA 282 (473)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Q ss_pred HHHHHHHHHHhch
Q 013174 370 QIAKAKEEAHSRK 382 (448)
Q Consensus 370 ei~~lk~~~~~~k 382 (448)
.+..++......+
T Consensus 283 ~ve~~k~~L~~~~ 295 (473)
T PF14643_consen 283 LVEKLKQELLDWK 295 (473)
T ss_pred HHHHHHHHHHHhc
No 99
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=26.15 E-value=9.5e+02 Score=26.84 Aligned_cols=80 Identities=11% Similarity=0.159 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHhhhhh----cCCCCChHHHHHHHHHHH
Q 013174 296 ALDLIEQAEVEVERLDQLKASRMKEIAFKRQGELEEIFARAHIEIDPVAAREKIMTLI----DSGNVEPAELLADMDNQI 371 (448)
Q Consensus 296 s~~~i~~l~~El~RL~~lK~~~ik~li~~~r~el~elWd~~~~~~e~~~~~~~~~~~~----~s~~~~~e~lL~~~E~ei 371 (448)
++...+.+..++-+|. .+..-+|..|..|-..+-.- .....-..+.. .+.-.--.+....+..|+
T Consensus 581 ~d~d~e~l~eqilKLK--------SLLSTKREQIaTLRTVLKAN---KqTAEvALanLKsKYE~EK~~v~etm~kLRnEL 649 (717)
T PF09730_consen 581 ADKDKEELQEQILKLK--------SLLSTKREQIATLRTVLKAN---KQTAEVALANLKSKYENEKAMVSETMMKLRNEL 649 (717)
T ss_pred ccccHHHhHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 4556677777776554 45555677777776665443 22222222222 222224566777888888
Q ss_pred HHHHHHHHhchHHHH
Q 013174 372 AKAKEEAHSRKEILD 386 (448)
Q Consensus 372 ~~lk~~~~~~k~il~ 386 (448)
+-||+-++....+=.
T Consensus 650 K~LKEDAATFsSlRa 664 (717)
T PF09730_consen 650 KALKEDAATFSSLRA 664 (717)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888887665444433
No 100
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=26.02 E-value=22 Score=37.38 Aligned_cols=76 Identities=16% Similarity=0.287 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHHHHhHHHHH--HHHhcCCchhhhccCCchhhhHHHHH---HhHHhcccCCCcc
Q 013174 365 ADMDNQIAKAKEEAHSRKEILDKVEKWMSACEEESW--LEDYNRDENRYNASRGAHLNLKRAEK---ARILVNKIPGMPR 439 (448)
Q Consensus 365 ~~~E~ei~~lk~~~~~~k~il~~v~~~~~l~~e~~~--le~~~~D~~R~~~~Rg~~~~Ll~eEk---~Rk~i~klP~~~e 439 (448)
+.+|.||..||+.+..-..-|+-+|.+.-..++... |-+|. +|+. .-...+.-.++|| +|-+|.+|=.|.|
T Consensus 372 e~YEqEI~~LkErL~~S~rkLeEyErrLl~QEqqt~Kll~qyq---~RLe-dSE~RLr~QQ~eKd~qmksII~RL~~vEe 447 (495)
T PF12004_consen 372 EKYEQEIQSLKERLRMSHRKLEEYERRLLSQEQQTQKLLLQYQ---ARLE-DSEERLRRQQEEKDSQMKSIISRLMAVEE 447 (495)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---Hhhh-hhHHHHHHHhhhhHHHHHHHHhhhhhhhh
Confidence 348899999999998888889999888766654422 33343 3333 1111112345555 5778999999999
Q ss_pred cccCC
Q 013174 440 IPEQP 444 (448)
Q Consensus 440 ~L~~~ 444 (448)
+||+.
T Consensus 448 ELrre 452 (495)
T PF12004_consen 448 ELRRE 452 (495)
T ss_dssp -----
T ss_pred hhhhh
Confidence 99874
No 101
>PF07083 DUF1351: Protein of unknown function (DUF1351); InterPro: IPR009785 This entry is represented by Lactobacillus prophage Lj928, Orf309. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial and phage proteins of around 230 residues in length. The function of this family is unknown.
Probab=25.63 E-value=5.5e+02 Score=23.86 Aligned_cols=80 Identities=10% Similarity=0.160 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHhHhcCCCCCCC--CCCCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 013174 124 VKEFSDVQSQIQKICGEIAGNLSLGD--QAPSVDESDLTL-KKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDLCGVLG 200 (448)
Q Consensus 124 ~~e~~~l~~~i~~l~~~L~~~~~~~~--~~~~~~~~~lS~-~~L~~l~~~l~~L~~ek~~R~~~~~~l~~~I~~L~~~L~ 200 (448)
......++.-+..+|...|.++.... -.+.+.....|. .-++.+...+.....+ ...+......|...+...|
T Consensus 107 ~~k~~~i~~~~~~~~~~~~v~~~~fe~~~~~~wlnks~s~kk~~eei~~~i~~~~~~----~~~~~~~~~~i~~~A~~~~ 182 (215)
T PF07083_consen 107 EEKREKIKEYFEEMAEEYGVDPEPFERIIKPKWLNKSYSLKKIEEEIDDQIDKIKQD----LEEIKAAKQAIEEKAEEYG 182 (215)
T ss_pred HHHHHHHHHHHHHHHHHcCCChHHHhhhcchHHhhcCCcHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHcC
Confidence 33445566777788888886553211 012222233444 3444555555555444 4455567777888888888
Q ss_pred CCccchh
Q 013174 201 MDFFSTV 207 (448)
Q Consensus 201 ~~~~~~~ 207 (448)
+++..-+
T Consensus 183 l~~~~yi 189 (215)
T PF07083_consen 183 LPADPYI 189 (215)
T ss_pred CCcHHHH
Confidence 8776544
No 102
>PRK09039 hypothetical protein; Validated
Probab=25.62 E-value=6.9e+02 Score=25.05 Aligned_cols=163 Identities=14% Similarity=0.180 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 013174 62 SRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEI 141 (448)
Q Consensus 62 ~k~~l~~~I~~~~~el~~L~~eLg~~~~~~~~~~~~~~~sL~~~l~~l~~~le~L~~~k~~R~~e~~~l~~~i~~l~~~L 141 (448)
....+.++++.+..+|..|...|+..-. ....|-..+..++.++..++..++. +...... .
T Consensus 47 ~i~~~~~eL~~L~~qIa~L~e~L~le~~--------~~~~l~~~l~~l~~~l~~a~~~r~~-------Le~~~~~----~ 107 (343)
T PRK09039 47 EISGKDSALDRLNSQIAELADLLSLERQ--------GNQDLQDSVANLRASLSAAEAERSR-------LQALLAE----L 107 (343)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHH--------HHhhHHHHHHHHHHHHHHHHHHHHH-------HHHHHhh----h
Confidence 3455666677777777777766666542 2345556666677766666555432 2222111 1
Q ss_pred cCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccchhhhccCCCCCCCCCc
Q 013174 142 AGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDLCGVLGMDFFSTVTEVHPSLNDSTGVQ 221 (448)
Q Consensus 142 ~~~~~~~~~~~~~~~~~lS~~~L~~l~~~l~~L~~ek~~R~~~~~~l~~~I~~L~~~L~~~~~~~~~~i~~sl~~~~~~~ 221 (448)
.. ....-..++..+...+...+.++.+-...+.-+..+|..|-..|+- .+..+.... .
T Consensus 108 ~~------------~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~-le~~L~~ae-------~-- 165 (343)
T PRK09039 108 AG------------AGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAA-LEAALDASE-------K-- 165 (343)
T ss_pred hh------------hcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-------H--
Confidence 00 1123467788888888888888888888888888888888877662 111110000 0
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCCC
Q 013174 222 SKSISNDTLARLAKTVLALKEDKKQRLHKLQELATQL-IDLWNLMDTP 268 (448)
Q Consensus 222 ~~~ls~~~l~~L~~~~~~L~~~K~~r~~~~~~l~~~l-~~LW~~L~~~ 268 (448)
. ..+.=.++...-.+|+....++.+.+..++.++ ..|=+.++.+
T Consensus 166 ~---~~~~~~~i~~L~~~L~~a~~~~~~~l~~~~~~~~~~l~~~~~~~ 210 (343)
T PRK09039 166 R---DRESQAKIADLGRRLNVALAQRVQELNRYRSEFFGRLREILGDR 210 (343)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCC
Confidence 0 022223344444455555555666666666665 2333455554
No 103
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=25.34 E-value=4.6e+02 Score=22.94 Aligned_cols=23 Identities=22% Similarity=0.289 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013174 111 PALEQLWKQKEERVKEFSDVQSQ 133 (448)
Q Consensus 111 ~~le~L~~~k~~R~~e~~~l~~~ 133 (448)
..+.+..++|......+.+|..+
T Consensus 119 ea~nEknkeK~~Lv~~L~eLv~e 141 (159)
T PF04949_consen 119 EAFNEKNKEKAQLVTRLMELVSE 141 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666666655
No 104
>PF11944 DUF3461: Protein of unknown function (DUF3461); InterPro: IPR020911 This entry describes proteins of unknown function.
Probab=25.09 E-value=2.3e+02 Score=23.90 Aligned_cols=50 Identities=12% Similarity=0.198 Sum_probs=32.8
Q ss_pred cchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013174 13 ETTCSSLLHKLQEIWDEVGENDEERDKMLLQIEKECLDVYKRKVEQAAKSR 63 (448)
Q Consensus 13 ~~~~~~~l~~L~~IWdeiG~~~~er~~~~~~l~~~~~~~~~~~v~e~~~~k 63 (448)
-.+-..++.+|..|...--...+-+.+.+..| .|+-.+...+++|.+...
T Consensus 73 s~~L~~vieELdqi~~~~~~~~d~K~kiL~dL-~HLE~Vv~~KIaEIe~dl 122 (125)
T PF11944_consen 73 SPNLRYVIEELDQITGREQAEVDLKQKILDDL-RHLEKVVNSKIAEIERDL 122 (125)
T ss_pred cHHHHHHHHHHHHHHcchhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 34556788999988773333333445555555 678888888888866543
No 105
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=24.74 E-value=4.8e+02 Score=22.95 Aligned_cols=27 Identities=11% Similarity=0.208 Sum_probs=23.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013174 159 LTLKKLDEYQAQLQELQKEKSDRLHKV 185 (448)
Q Consensus 159 lS~~~L~~l~~~l~~L~~ek~~R~~~~ 185 (448)
+|.+....+......+.++...|..-|
T Consensus 142 vs~ee~~~~~~~~~~~~k~w~kRKri~ 168 (169)
T PF07106_consen 142 VSPEEKEKLEKEYKKWRKEWKKRKRIC 168 (169)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 689999999999999999998887643
No 106
>PHA03419 E4 protein; Provisional
Probab=24.59 E-value=1.7e+02 Score=26.67 Aligned_cols=42 Identities=19% Similarity=0.328 Sum_probs=31.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Q 013174 225 ISNDTLARLAKTVLALKEDKKQRLHKLQELATQLIDLWNLMDTPS 269 (448)
Q Consensus 225 ls~~~l~~L~~~~~~L~~~K~~r~~~~~~l~~~l~~LW~~L~~~~ 269 (448)
.....|..+...+.+.+....+-+ +++...|..+|.+|+||+
T Consensus 159 ~~e~LL~~vA~~L~kWE~~f~qLV---~~I~~DL~~YW~kL~tPQ 200 (200)
T PHA03419 159 DQEGLLPGVALRLQKWEQQFDQLV---DNIVVDLRDYWQRLRTPQ 200 (200)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcCCC
Confidence 335677778888888877776533 357789999999999984
No 107
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=24.52 E-value=8.7e+02 Score=25.83 Aligned_cols=37 Identities=24% Similarity=0.212 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 013174 297 LDLIEQAEVEVERLDQLKASRMKEIAFKRQGELEEIFA 334 (448)
Q Consensus 297 ~~~i~~l~~El~RL~~lK~~~ik~li~~~r~el~elWd 334 (448)
.+.=+.+.+|+.-|+...++-|..|-+ ...+|..+-.
T Consensus 267 ~da~~ql~aE~~EleDkyAE~m~~~~E-aeeELk~lrs 303 (596)
T KOG4360|consen 267 KDAQRQLTAELEELEDKYAECMQMLHE-AEEELKCLRS 303 (596)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhcc
Confidence 456678899999999999999977765 7888877643
No 108
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=24.41 E-value=4.4e+02 Score=22.39 Aligned_cols=69 Identities=12% Similarity=0.197 Sum_probs=36.2
Q ss_pred ccchHHHHHHHHHHHHHHhCCChHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013174 12 GETTCSSLLHKLQEIWDEVGENDEERDKMLLQI------EKECLDVYKRKVEQAAKSRAQLLQALSDAKIELASL 80 (448)
Q Consensus 12 ~~~~~~~~l~~L~~IWdeiG~~~~er~~~~~~l------~~~~~~~~~~~v~e~~~~k~~l~~~I~~~~~el~~L 80 (448)
+...|+++-.+|..+|+.|--....=..+|..+ ..++...+++.|.+......++..++...+.-+..|
T Consensus 41 m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~L 115 (126)
T PF07889_consen 41 MSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGL 115 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 356788888999999998866554222222111 123344444444444444444444444444444333
No 109
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=23.98 E-value=3.6e+02 Score=21.22 Aligned_cols=68 Identities=15% Similarity=0.255 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHH-------HHHHHhCCCCcCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013174 63 RAQLLQALSDAKIELA-------SLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQ 135 (448)
Q Consensus 63 k~~l~~~I~~~~~el~-------~L~~eLg~~~~~~~~~~~~~~~sL~~~l~~l~~~le~L~~~k~~R~~e~~~l~~~i~ 135 (448)
+..+.++|..++.+++ .|-..+|.++++.. . .+.++......+-..+.-+..+ +..+...+.
T Consensus 10 r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~---~-~~~~lp~~~keLL~EIA~lE~e-------V~~LE~~v~ 78 (88)
T PF14389_consen 10 RSALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLP---S-SPSSLPKKAKELLEEIALLEAE-------VAKLEQKVL 78 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccC---C-ccccCChHHHHHHHHHHHHHHH-------HHHHHHHHH
Confidence 3444444444444443 56777888776541 1 2344444555555555555444 444444555
Q ss_pred HHHhHh
Q 013174 136 KICGEI 141 (448)
Q Consensus 136 ~l~~~L 141 (448)
.|+..+
T Consensus 79 ~L~~~l 84 (88)
T PF14389_consen 79 SLYRQL 84 (88)
T ss_pred HHHHHH
Confidence 554443
No 110
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=23.47 E-value=8.4e+02 Score=25.28 Aligned_cols=180 Identities=18% Similarity=0.208 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCCCCCcHHHHHHHHHHHHHHHHH
Q 013174 39 KMLLQIEKECLDVYKRKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWK 118 (448)
Q Consensus 39 ~~~~~l~~~~~~~~~~~v~e~~~~k~~l~~~I~~~~~el~~L~~eLg~~~~~~~~~~~~~~~sL~~~l~~l~~~le~L~~ 118 (448)
+.+.++.++ ..-.+..+.+.......+.++|+....++..+-.+|-...... .-+...+..+...+..+..
T Consensus 38 ~~l~q~q~e-i~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l--------~~~~~~I~~~~~~l~~l~~ 108 (420)
T COG4942 38 KQLKQIQKE-IAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDL--------KKLRKQIADLNARLNALEV 108 (420)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH--------HHHHhhHHHHHHHHHHHHH
Confidence 444455444 3356677888888888999999999999998888886554321 2334567777888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013174 119 QKEERVKEFSDVQSQIQKICGEIAGNLSLGDQAPSVDESDLTLKK---LDEYQAQLQELQKEKSDRLHKVLEFVSTVHDL 195 (448)
Q Consensus 119 ~k~~R~~e~~~l~~~i~~l~~~L~~~~~~~~~~~~~~~~~lS~~~---L~~l~~~l~~L~~ek~~R~~~~~~l~~~I~~L 195 (448)
++.+|...+..+..-. ..+|..|.... -+|.+. -..+..++..+..+..+++..+......|...
T Consensus 109 q~r~qr~~La~~L~A~----~r~g~~p~~~l--------l~~~eda~~~~R~ai~~~~l~~~~~~~i~~l~~~~~~l~~~ 176 (420)
T COG4942 109 QEREQRRRLAEQLAAL----QRSGRNPPPAL--------LVSPEDAQRSVRLAIYYGALNPARAERIDALKATLKQLAAV 176 (420)
T ss_pred HHHHHHHHHHHHHHHH----HhccCCCCchh--------hcChhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 7755544444443332 23444443111 122222 23556666777777666666555555555544
Q ss_pred HHHhCCCccchhhhccCCCCCCCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013174 196 CGVLGMDFFSTVTEVHPSLNDSTGVQSKSISNDTLARLAKTVLALKEDKKQRLHKLQELATQLI 259 (448)
Q Consensus 196 ~~~L~~~~~~~~~~i~~sl~~~~~~~~~~ls~~~l~~L~~~~~~L~~~K~~r~~~~~~l~~~l~ 259 (448)
-..+.-.-.+ ....+........+|.....+|.+....+-..+.
T Consensus 177 ~~~iaaeq~~--------------------l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~ 220 (420)
T COG4942 177 RAEIAAEQAE--------------------LTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELS 220 (420)
T ss_pred HHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443321110 1223445555555555555555555555555543
No 111
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=23.13 E-value=6.1e+02 Score=27.02 Aligned_cols=78 Identities=24% Similarity=0.354 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHH
Q 013174 42 LQIEKECLDVYKRKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKE 121 (448)
Q Consensus 42 ~~l~~~~~~~~~~~v~e~~~~k~~l~~~I~~~~~el~~L~~eLg~~~~~~~~~~~~~~~sL~~~l~~l~~~le~L~~~k~ 121 (448)
.....+|..+... ++.++..+..+..++......+..|-++|-...... + .|+..+..++-.|.....
T Consensus 437 ~~f~~Ec~aL~~r-L~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NY----E-------~QLs~MSEHLasmNeqL~ 504 (518)
T PF10212_consen 437 VHFYAECRALQKR-LESAEKEKESLEEELKEANQNISRLQDELETTRRNY----E-------EQLSMMSEHLASMNEQLA 504 (518)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH----H-------HHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHH
Q 013174 122 ERVKEFSDVQ 131 (448)
Q Consensus 122 ~R~~e~~~l~ 131 (448)
....+|..++
T Consensus 505 ~Q~eeI~~LK 514 (518)
T PF10212_consen 505 KQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHh
No 112
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=22.56 E-value=9.8e+02 Score=25.74 Aligned_cols=46 Identities=22% Similarity=0.258 Sum_probs=39.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Q 013174 226 SNDTLARLAKTVLALKEDKKQRLHKLQELATQLIDLWNLMDTPSEE 271 (448)
Q Consensus 226 s~~~l~~L~~~~~~L~~~K~~r~~~~~~l~~~l~~LW~~L~~~~ee 271 (448)
+...|..|+.-+..++.+|.+-..+.++|...|..|=.+|+.-.++
T Consensus 415 ~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~~~~ 460 (546)
T PF07888_consen 415 NRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDKVADE 460 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3556888999999999999999999999999999999999876554
No 113
>KOG4398 consensus Predicted coiled-coil protein [General function prediction only]
Probab=22.36 E-value=5.9e+02 Score=24.75 Aligned_cols=20 Identities=30% Similarity=0.443 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHhHHHHH
Q 013174 303 AEVEVERLDQLKASRMKEIA 322 (448)
Q Consensus 303 l~~El~RL~~lK~~~ik~li 322 (448)
+..-++||..++..+|.+|+
T Consensus 70 ~~~~~erl~~lr~shi~el~ 89 (359)
T KOG4398|consen 70 LRSHYERLANLRRSHILELT 89 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45567899999999988876
No 114
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=22.29 E-value=1.1e+03 Score=26.22 Aligned_cols=43 Identities=16% Similarity=0.200 Sum_probs=23.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCC
Q 013174 159 LTLKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHD-LCGVLGM 201 (448)
Q Consensus 159 lS~~~L~~l~~~l~~L~~ek~~R~~~~~~l~~~I~~-L~~~L~~ 201 (448)
.....+..++..+..+++....-...|..-...... ++..||+
T Consensus 603 ~~~~e~~~l~~~~~~~ekr~~RLkevf~~ks~eFr~av~~llGy 646 (722)
T PF05557_consen 603 SQEKEIAELKAELASAEKRNQRLKEVFKAKSQEFREAVYSLLGY 646 (722)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSE
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 445567788888887765554444444444443333 3455684
No 115
>PF07216 LcrG: LcrG protein; InterPro: IPR009863 This family consists of several bacterial LcrG proteins. Yersiniae are equipped with the Yop virulon, an apparatus that allows extracellular bacteria to deliver toxic Yop proteins inside the host cell cytosol in order to sabotage the communication networks of the host cell or even to cause cell death. LcrG is a component of the Yop virulon involved in the regulation of secretion of the Yops []. This protein is found in type III secretion operons, along with LcrR, H and V. Also known as PcrG in Pseudomonas, the prot ein is believed to make a 1:1 complex with PcrV (LcrV) []. Mutations in LcrG cause premature secretion of effector proteins into the medium [].
Probab=22.28 E-value=3e+02 Score=21.95 Aligned_cols=23 Identities=9% Similarity=-0.005 Sum_probs=18.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHH
Q 013174 255 ATQLIDLWNLMDTPSEERRLFDH 277 (448)
Q Consensus 255 ~~~l~~LW~~L~~~~ee~~~F~~ 277 (448)
..-+.+||.-||+++.-..-+..
T Consensus 25 ~~llqEm~~gLg~~p~ag~lLf~ 47 (93)
T PF07216_consen 25 NDLLQEMLEGLGLGPVAGELLFG 47 (93)
T ss_pred HHHHHHHHHhcCCChhHHHHHhc
Confidence 45678999999999987666654
No 116
>PRK02793 phi X174 lysis protein; Provisional
Probab=22.20 E-value=3.5e+02 Score=20.43 Aligned_cols=47 Identities=15% Similarity=0.136 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 013174 39 KMLLQIEKECLDVYKRKVEQAAKSRAQLLQALSDAKIELASLLSALGE 86 (448)
Q Consensus 39 ~~~~~l~~~~~~~~~~~v~e~~~~k~~l~~~I~~~~~el~~L~~eLg~ 86 (448)
.++..|+.. ..+....|++.+....+-.+.|..++.++..|...|+.
T Consensus 8 ~Ri~~LE~~-lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 8 ARLAELESR-LAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455444 44566677777777777777777777777777666643
No 117
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=22.18 E-value=3.4e+02 Score=20.23 Aligned_cols=38 Identities=16% Similarity=0.176 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 013174 49 LDVYKRKVEQAAKSRAQLLQALSDAKIELASLLSALGE 86 (448)
Q Consensus 49 ~~~~~~~v~e~~~~k~~l~~~I~~~~~el~~L~~eLg~ 86 (448)
.......|++.+.....-.+.|..++.++..|...|..
T Consensus 13 la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 50 (69)
T PF04102_consen 13 LAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRE 50 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555666666666666777777777777777666654
No 118
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=21.92 E-value=8.9e+02 Score=25.69 Aligned_cols=88 Identities=11% Similarity=0.152 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCC---CCC-CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013174 54 RKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGL---GIP-EKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSD 129 (448)
Q Consensus 54 ~~v~e~~~~k~~l~~~I~~~~~el~~L~~eLg~~~~~~~---~~~-~~~~~sL~~~l~~l~~~le~L~~~k~~R~~e~~~ 129 (448)
..+.+.+...+.+...++.+..++ .++..++....... ... ......+.+....+..++.++.....+.-.++.+
T Consensus 78 ~~l~~l~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (525)
T TIGR02231 78 KQIRELEAELRDLEDRGDALKALA-KFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDREAERRIRE 156 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555655666555555 33344443211000 000 1112235566677788888888888888888888
Q ss_pred HHHHHHHHHhHhc
Q 013174 130 VQSQIQKICGEIA 142 (448)
Q Consensus 130 l~~~i~~l~~~L~ 142 (448)
+..++..+-.+|.
T Consensus 157 ~~~~l~~l~~~l~ 169 (525)
T TIGR02231 157 LEKQLSELQNELN 169 (525)
T ss_pred HHHHHHHHHHHHH
Confidence 8888877766654
No 119
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=21.84 E-value=7.7e+02 Score=24.21 Aligned_cols=33 Identities=15% Similarity=0.215 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013174 52 YKRKVEQAAKSRAQLLQALSDAKIELASLLSAL 84 (448)
Q Consensus 52 ~~~~v~e~~~~k~~l~~~I~~~~~el~~L~~eL 84 (448)
|+..|++++..+..+.+........+..|..++
T Consensus 225 WR~H~~QM~s~~~nIe~~~~~~~~~Ldklh~ei 257 (384)
T KOG0972|consen 225 WRLHLEQMNSMHKNIEQKVGNVGPYLDKLHKEI 257 (384)
T ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Confidence 445677777777776666666666666655554
No 120
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=21.68 E-value=6.3e+02 Score=26.11 Aligned_cols=81 Identities=17% Similarity=0.223 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCCC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013174 54 RKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKT-SGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQS 132 (448)
Q Consensus 54 ~~v~e~~~~k~~l~~~I~~~~~el~~L~~eLg~~~~~~~~~~~~~-~~sL~~~l~~l~~~le~L~~~k~~R~~e~~~l~~ 132 (448)
+.|-.....+..+..++..++++.+.+..++|...... .. ...|..+.+.+..++..+.. +...+..
T Consensus 30 d~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~-----~~~~~~l~~~~~~l~~~~~~~~~-------~~~~~~~ 97 (418)
T TIGR00414 30 EKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQK-----KDKIEEIKKELKELKEELTELSA-------ALKALEA 97 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-----cchHHHHHHHHHHHHHHHHHHHH-------HHHHHHH
Confidence 34445666778888999999999999999997732111 11 12444444555555554444 4667777
Q ss_pred HHHHHHhHhcCCCC
Q 013174 133 QIQKICGEIAGNLS 146 (448)
Q Consensus 133 ~i~~l~~~L~~~~~ 146 (448)
++..+...|.--++
T Consensus 98 ~~~~~~~~lPN~~~ 111 (418)
T TIGR00414 98 ELQDKLLSIPNIPH 111 (418)
T ss_pred HHHHHHHhCCCCCC
Confidence 77777766665443
No 121
>PRK13677 hypothetical protein; Provisional
Probab=21.35 E-value=3.3e+02 Score=22.84 Aligned_cols=50 Identities=14% Similarity=0.190 Sum_probs=34.2
Q ss_pred ccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013174 12 GETTCSSLLHKLQEIWDEVGENDEERDKMLLQIEKECLDVYKRKVEQAAKS 62 (448)
Q Consensus 12 ~~~~~~~~l~~L~~IWdeiG~~~~er~~~~~~l~~~~~~~~~~~v~e~~~~ 62 (448)
+-++-..++.+|..|....-...+-+.+.+..| .|+..++..+++|-+..
T Consensus 72 i~~~l~~vidELd~i~~~~~~e~d~K~kiL~dL-rHLE~Vv~~KIaEIe~d 121 (125)
T PRK13677 72 ISPNLRYVIDELDQICQRDREEVDLKRKILDDL-RHLESVVANKISEIEAD 121 (125)
T ss_pred ccHHHHHHHHHHHHHhcchhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 345566789999999885555444445555555 67788888888885543
No 122
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=21.22 E-value=4.7e+02 Score=21.50 Aligned_cols=36 Identities=19% Similarity=0.322 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013174 227 NDTLARLAKTVLALKEDKKQRLHKLQELATQLIDLW 262 (448)
Q Consensus 227 ~~~l~~L~~~~~~L~~~K~~r~~~~~~l~~~l~~LW 262 (448)
.+.++.+...+..++.....-.+.+..+...+..+=
T Consensus 86 ~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~ 121 (129)
T cd00890 86 EEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQ 121 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666665555555555555555555443
No 123
>PF10239 DUF2465: Protein of unknown function (DUF2465); InterPro: IPR018797 FAM98A, B and C are glycine-rich proteins found from worms to humans whose function is unknown.
Probab=21.21 E-value=8.2e+02 Score=24.31 Aligned_cols=145 Identities=18% Similarity=0.221 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCcCCC--CCCC--CCCCcHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Q 013174 67 LQALSDAKIELASLLSALGEKSIAGL--GIPE--KTSGTIKEQLAAIAPALEQLWKQKEERVKE-------FSDVQSQIQ 135 (448)
Q Consensus 67 ~~~I~~~~~el~~L~~eLg~~~~~~~--~~~~--~~~~sL~~~l~~l~~~le~L~~~k~~R~~e-------~~~l~~~i~ 135 (448)
..+...++-++..+..+||=|..... ...+ .....-+..+..|-.+|...+-....+... -......++
T Consensus 57 ~dd~~~f~~Els~~L~El~CPy~~L~~G~~~~rl~~~~~~l~LL~fL~sELqaarl~~~k~~~~~~~~~~~~s~~~~~l~ 136 (318)
T PF10239_consen 57 PDDAESFLLELSGFLKELGCPYSALTSGDISDRLQSKEDRLLLLEFLCSELQAARLLAKKKPEEPEQEEEKESEVAQELK 136 (318)
T ss_pred CchHHHHHHHHHHHHHhcCCCcHHHcCCcchhhhcCHHHHHHHHHHHHHHHHHHHHHHhccCCccccccccccHHHHHHH
Confidence 45566788999999999998854220 0000 001122334566666666655544333222 244666788
Q ss_pred HHHhHhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccchhhhccCCCC
Q 013174 136 KICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDLCGVLGMDFFSTVTEVHPSLN 215 (448)
Q Consensus 136 ~l~~~L~~~~~~~~~~~~~~~~~lS~~~L~~l~~~l~~L~~ek~~R~~~~~~l~~~I~~L~~~L~~~~~~~~~~i~~sl~ 215 (448)
.+|..|+.+.... +++... .+..++.. |.++...+.-+ ..- .|-
T Consensus 137 ~i~~~L~l~~p~~---------~i~~~~------lf~~i~~k--------------i~~~L~~lp~~--~~~---~PL-- 180 (318)
T PF10239_consen 137 AICQALGLPKPPP---------NITASQ------LFSKIEAK--------------IEELLSKLPPG--HMG---KPL-- 180 (318)
T ss_pred HHHHHhCCCCCCC---------CCCHHH------HHHHHHHH--------------HHHHHHhcCcc--ccC---CCC--
Confidence 8888887764311 223221 22222222 22222233221 110 111
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013174 216 DSTGVQSKSISNDTLARLAKTVLALKEDKKQRLHKLQ 252 (448)
Q Consensus 216 ~~~~~~~~~ls~~~l~~L~~~~~~L~~~K~~r~~~~~ 252 (448)
-..+|++....+|+...+.|..++.-|.+.+.
T Consensus 181 -----l~~~L~~~Qw~~Le~i~~~L~~EY~~RR~mLl 212 (318)
T PF10239_consen 181 -----LKKSLTDEQWEKLEKINQALSKEYECRRQMLL 212 (318)
T ss_pred -----cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 13579999999999999999999999888754
No 124
>PF11593 Med3: Mediator complex subunit 3 fungal; InterPro: IPR020998 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the subunit Med3, which is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=21.20 E-value=2.2e+02 Score=28.78 Aligned_cols=83 Identities=11% Similarity=0.106 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhcCCCCChHHHHHHHHHHHHHHHHHH
Q 013174 299 LIEQAEVEVERLDQLKASRMKEIAFKRQGELEEIFARAHIEIDPVAAREKIMTLIDSGNVEPAELLADMDNQIAKAKEEA 378 (448)
Q Consensus 299 ~i~~l~~El~RL~~lK~~~ik~li~~~r~el~elWd~~~~~~e~~~~~~~~~~~~~s~~~~~e~lL~~~E~ei~~lk~~~ 378 (448)
+++.|+.-|..=+. -+..+..-|...+..|.=| |-.|..|...+.+ | ....+....++|+
T Consensus 9 ~LeeLe~kLa~~d~-~Kd~V~~~I~ea~~sILPl----------RL~FNeFi~tma~--------I-e~~~~~s~qeKFl 68 (379)
T PF11593_consen 9 KLEELEEKLASNDN-SKDSVMDKISEAQDSILPL----------RLQFNEFIQTMAN--------I-EEMNNKSPQEKFL 68 (379)
T ss_pred cHHHHHHHHhcCCc-hHHHHHHHHHHHHhccccH----------HHHHHHHHHHHHH--------h-hcccccCHHHHHH
Confidence 44555555542222 3334444444455544322 5555555554432 1 2335677888999
Q ss_pred HhchHHHHHHHHHHHHhHHHHHH
Q 013174 379 HSRKEILDKVEKWMSACEEESWL 401 (448)
Q Consensus 379 ~~~k~il~~v~~~~~l~~e~~~l 401 (448)
..|.-|++++.+.+.+..+...|
T Consensus 69 ~IR~KlleL~~~lQ~lS~df~~L 91 (379)
T PF11593_consen 69 LIRSKLLELYNKLQELSSDFQKL 91 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999988887764
No 125
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=20.92 E-value=8.9e+02 Score=24.60 Aligned_cols=24 Identities=21% Similarity=0.378 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCc
Q 013174 180 DRLHKVLEFVSTVHDLCGVLGMDF 203 (448)
Q Consensus 180 ~R~~~~~~l~~~I~~L~~~L~~~~ 203 (448)
.-..++..|-..|..|=..||++.
T Consensus 206 ~~la~~a~LE~RL~~LE~~lG~~~ 229 (388)
T PF04912_consen 206 QQLARAADLEKRLARLESALGIDS 229 (388)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCc
Confidence 345677788888889999999844
No 126
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=20.87 E-value=7.5e+02 Score=23.71 Aligned_cols=130 Identities=13% Similarity=0.179 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013174 54 RKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQ 133 (448)
Q Consensus 54 ~~v~e~~~~k~~l~~~I~~~~~el~~L~~eLg~~~~~~~~~~~~~~~sL~~~l~~l~~~le~L~~~k~~R~~e~~~l~~~ 133 (448)
....+.....+.+...+..-..+...+....|.. .... .+..-..++...+..|+..++....--..-...|.....-
T Consensus 36 ~~~~~~~~~L~e~~~~L~~E~~ed~~~r~~~g~~-W~r~-~S~~~~~~l~~~l~~~~~~L~~A~~sD~~~~~~~~~~~~~ 113 (296)
T PF13949_consen 36 ELSQEVRSILDEIEEMLDEEEREDEQLRAKYGER-WTRP-PSSELNASLRKELQKYREYLEQASESDSQLRSKLESIEEN 113 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTT-CGSS--HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CcCC-CcHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3334444444445555555556666677777652 2220 0111234777888888888888777666666666666666
Q ss_pred HHHHHhHhcC----CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013174 134 IQKICGEIAG----NLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKSDRLHKVLEFVS 190 (448)
Q Consensus 134 i~~l~~~L~~----~~~~~~~~~~~~~~~lS~~~L~~l~~~l~~L~~ek~~R~~~~~~l~~ 190 (448)
+.-||.-... -|... .....-..+.+..|+..+..+..-+.+|...+..+..
T Consensus 114 l~~L~~~~~~L~~~lp~~~-----~~~~~~~~~~i~~L~~ll~~l~~l~~eR~~~~~~lk~ 169 (296)
T PF13949_consen 114 LELLSGPIEELEASLPSSS-----PSDSPQVSEVIRQLRELLNKLEELKKEREELLEQLKE 169 (296)
T ss_dssp HHHHTSSHHHHHHHS--B--------SSGSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCChhhHHhhCCCCC-----cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555431110 01100 0012223677788888888888888888886666665
No 127
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=20.84 E-value=1.2e+03 Score=26.08 Aligned_cols=32 Identities=9% Similarity=0.119 Sum_probs=23.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013174 158 DLTLKKLDEYQAQLQELQKEKSDRLHKVLEFV 189 (448)
Q Consensus 158 ~lS~~~L~~l~~~l~~L~~ek~~R~~~~~~l~ 189 (448)
.++..+...+++.|.+.-.+..+=+++++.+.
T Consensus 681 ~L~~~Q~~~I~~iL~~~~~~I~~~v~~ik~i~ 712 (717)
T PF10168_consen 681 VLSESQKRTIKEILKQQGEEIDELVKQIKNIK 712 (717)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999888877666555444443
No 128
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=20.72 E-value=1.4e+03 Score=27.00 Aligned_cols=10 Identities=20% Similarity=0.581 Sum_probs=4.1
Q ss_pred hHHHHHHHHH
Q 013174 382 KEILDKVEKW 391 (448)
Q Consensus 382 k~il~~v~~~ 391 (448)
+.|.+.|.+.
T Consensus 994 ~~l~~~i~~~ 1003 (1163)
T COG1196 994 EKLLEVIEEL 1003 (1163)
T ss_pred HHHHHHHHHH
Confidence 3344444443
No 129
>cd09237 V_ScBro1_like Protein-interacting V-domain of Saccharomyces cerevisiae Bro1 and related domains. This family contains the V-shaped (V) domain of Saccharomyces cerevisiae Bro1, and related domains. It belongs to the V_Alix_like superfamily which also includes the V-domain of Saccharomyces cerevisiae Rim20 (also known as PalA), mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Bro1 interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in endosomal trafficking. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. Bro1 also has an N-terminal Bro1-like domain, which binds Snf7, a component of the ESCRT-III complex, and a C-terminal proline-rich
Probab=20.14 E-value=8.8e+02 Score=24.27 Aligned_cols=264 Identities=13% Similarity=0.127 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013174 21 HKLQEIWDEVGENDEERDKMLLQIEKEC---------------------LDVYKRKVEQAAKSRAQLLQALSDAKIELAS 79 (448)
Q Consensus 21 ~~L~~IWdeiG~~~~er~~~~~~l~~~~---------------------~~~~~~~v~e~~~~k~~l~~~I~~~~~el~~ 79 (448)
.+++.+-+.++.|.. +..++.-. .+-+......-....+.....+..-..+...
T Consensus 31 ~~~~~~L~~lnLP~s-----L~~l~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~l~~~~~~~l~~~~~~L~~E~~ed~~ 105 (356)
T cd09237 31 EEYASFLEYLNLPKL-----LVDLKERFEGENELMEIVSGLKSSSVDSQLELLRPQSASWVNEIDSSYNDLDEEMKEIEK 105 (356)
T ss_pred HHHHHHHHHcCCcHH-----HHHHhhhcCCchhHHHHHHhccCCCcchhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhCC-----CCcCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------HhcCCCCCC
Q 013174 80 LLSALGE-----KSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICG------EIAGNLSLG 148 (448)
Q Consensus 80 L~~eLg~-----~~~~~~~~~~~~~~sL~~~l~~l~~~le~L~~~k~~R~~e~~~l~~~i~~l~~------~L~~~~~~~ 148 (448)
+...+|. |.... ..++...+..|+..++....-=..-...|......+.-||. .+-+.|...
T Consensus 106 ~R~k~g~~Wtr~~S~~~-------~~~l~~~~~k~~~~L~~A~~SD~~l~~~~~~~~~~l~lL~~~~~~l~~~~~~p~~~ 178 (356)
T cd09237 106 MRKKILAKWTQSPSSSL-------TASLREDLVKLKKSLVEASASDEKLFSLVDPVKEDIALLLNGGSLWEELFGFSSSG 178 (356)
T ss_pred HHHHHhcccccccchhh-------hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCChHHHHHHhcCCCCC
Q ss_pred CCCCCCCCCCCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHhCC---CccchhhhccCC
Q 013174 149 DQAPSVDESDLTL------KKLDEYQAQLQELQKEKSDRLHKVLEFVSTVH------DLCGVLGM---DFFSTVTEVHPS 213 (448)
Q Consensus 149 ~~~~~~~~~~lS~------~~L~~l~~~l~~L~~ek~~R~~~~~~l~~~I~------~L~~~L~~---~~~~~~~~i~~s 213 (448)
.+.+++.+.|.|. ..+..|+..+..+..-+.+|...+.+++..++ .|+...+. .++..+
T Consensus 179 ~~~~slld~d~~~~~~~~~~~i~~L~~ll~~l~~lk~eR~~~~~~Lk~k~~~DDI~~~ll~~~~~~~~~~e~lF------ 252 (356)
T cd09237 179 SPEPSLLDLDDSQNEQTVLKQIKQLEELLEDLNLIKEERQRVLKDLKQKIHNDDISDILILNSKSKSEIEKQLF------ 252 (356)
T ss_pred CCCCcccCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHhcccccchHHHHH------
Q ss_pred CCCCCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-------------HHHHHHHHhc
Q 013174 214 LNDSTGVQSKSISNDTLARLAKTVLALKEDKKQRLHKLQELATQLIDLWNLMDTPSE-------------ERRLFDHVTC 280 (448)
Q Consensus 214 l~~~~~~~~~~ls~~~l~~L~~~~~~L~~~K~~r~~~~~~l~~~l~~LW~~L~~~~e-------------e~~~F~~~~~ 280 (448)
-+.|++ .+.++..-.+...+=..+..+|...|..+.-... +|+.|.....
T Consensus 253 ----------------~~eL~k-f~p~~~~l~~~~~~Q~~ll~el~~~~~~f~~~~~~~~~~~~~~~~~~~R~~~l~~l~ 315 (356)
T cd09237 253 ----------------PEELEK-FKPLQNRLEATIFKQSSLINELKIELDKLFKLPGVKEKQSKEKSKQKLRKEFFEKLK 315 (356)
T ss_pred ----------------HHHHHH-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHhhhhhhhhhHHHHHHHHHHHHH
Q ss_pred cccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 013174 281 NISAYVDGVTVPGALALDLIEQAEVEVERLDQLKASRMKEIAFKRQGELEEIFA 334 (448)
Q Consensus 281 ~i~~s~~~~~~~~~ls~~~i~~l~~El~RL~~lK~~~ik~li~~~r~el~elWd 334 (448)
. +-+....+..=+..=...+.. |...+...+..+..+..
T Consensus 316 ~--------------ay~~y~el~~~l~~G~~FY~d-L~~~~~~l~~~~~~fv~ 354 (356)
T cd09237 316 K--------------AYNSFKKFSAGLPKGLEFYDD-LLKMAKDLAKNVQAFVN 354 (356)
T ss_pred H--------------HHHHHHHHHhChHHHHHHHHH-HHHHHHHHHHHHHHHhh
No 130
>PRK02119 hypothetical protein; Provisional
Probab=20.02 E-value=4e+02 Score=20.22 Aligned_cols=45 Identities=9% Similarity=0.189 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 013174 40 MLLQIEKECLDVYKRKVEQAAKSRAQLLQALSDAKIELASLLSALG 85 (448)
Q Consensus 40 ~~~~l~~~~~~~~~~~v~e~~~~k~~l~~~I~~~~~el~~L~~eLg 85 (448)
++..|+-. ..+....|++.+....+-.+.|..++.++..|...|+
T Consensus 10 Ri~~LE~r-la~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~ 54 (73)
T PRK02119 10 RIAELEMK-IAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLK 54 (73)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445433 3455667777777777777777777777777766663
Done!