Query 013174
Match_columns 448
No_of_seqs 176 out of 486
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 05:34:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013174.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013174hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nrx_A Protein regulator of cy 99.8 5.1E-20 1.8E-24 154.8 0.9 71 372-445 3-74 (130)
2 1go4_E MAD1 (mitotic arrest de 68.7 30 0.001 27.0 8.4 41 221-261 5-45 (100)
3 3ghg_A Fibrinogen alpha chain; 67.8 8.3 0.00028 39.0 6.3 94 101-200 54-148 (562)
4 2lw1_A ABC transporter ATP-bin 60.7 28 0.00097 26.4 6.9 65 60-130 21-85 (89)
5 1i84_S Smooth muscle myosin he 60.2 13 0.00045 42.2 7.0 13 364-376 1153-1165(1184)
6 3na7_A HP0958; flagellar bioge 58.7 1.1E+02 0.0037 27.9 18.1 113 104-261 11-123 (256)
7 1i84_S Smooth muscle myosin he 57.5 25 0.00085 40.0 8.7 33 107-139 909-941 (1184)
8 1deq_A Fibrinogen (alpha chain 57.5 63 0.0022 31.3 10.1 95 101-200 57-151 (390)
9 1use_A VAsp, vasodilator-stimu 55.7 38 0.0013 22.3 5.6 36 293-330 2-40 (45)
10 2jo8_A Serine/threonine-protei 54.7 12 0.00042 25.4 3.3 25 365-389 24-49 (51)
11 1go4_E MAD1 (mitotic arrest de 52.5 81 0.0028 24.6 9.0 37 159-195 9-45 (100)
12 2lw9_A Unconventionnal myosin- 47.3 38 0.0013 22.5 4.7 39 297-335 5-43 (51)
13 1l8d_A DNA double-strand break 44.8 1.1E+02 0.0037 23.8 11.4 86 53-141 16-101 (112)
14 3oja_B Anopheles plasmodium-re 44.7 2.7E+02 0.0091 28.3 13.9 74 53-137 462-535 (597)
15 1kd8_B GABH BLL, GCN4 acid bas 42.9 58 0.002 20.1 4.8 31 105-135 2-32 (36)
16 3oja_B Anopheles plasmodium-re 42.8 2.8E+02 0.0097 28.1 17.9 38 161-198 536-573 (597)
17 2yy0_A C-MYC-binding protein; 41.9 57 0.0019 22.2 5.2 30 113-142 21-50 (53)
18 1l8d_A DNA double-strand break 38.8 1.4E+02 0.0046 23.2 11.9 88 104-199 10-101 (112)
19 1vcs_A Vesicle transport throu 37.9 43 0.0015 26.1 4.7 21 99-119 69-89 (102)
20 3ghg_A Fibrinogen alpha chain; 36.6 2.8E+02 0.0097 28.0 11.3 35 297-332 116-150 (562)
21 3lay_A Zinc resistance-associa 35.2 2.2E+02 0.0074 24.5 11.6 65 223-315 66-130 (175)
22 3gp4_A Transcriptional regulat 34.2 1.9E+02 0.0066 23.6 12.9 125 258-412 5-129 (142)
23 3c3f_A Alpha/beta peptide with 33.0 84 0.0029 19.1 4.4 29 105-133 2-30 (34)
24 3cuq_A Vacuolar-sorting protei 30.4 88 0.003 28.3 6.1 49 99-147 9-57 (234)
25 2bni_A General control protein 29.1 89 0.003 19.1 3.9 29 105-133 2-30 (34)
26 2yy0_A C-MYC-binding protein; 29.0 1.1E+02 0.0038 20.7 5.0 35 158-192 15-49 (53)
27 1vmg_A Hypothetical protein SS 28.8 1.7E+02 0.0058 22.3 6.7 67 20-89 17-86 (95)
28 1kd8_A GABH AIV, GCN4 acid bas 27.7 1E+02 0.0034 19.1 4.0 30 106-135 3-32 (36)
29 1quu_A Human skeletal muscle a 27.4 3.2E+02 0.011 24.1 16.1 144 20-191 96-244 (250)
30 2dq3_A Seryl-tRNA synthetase; 27.4 3.1E+02 0.011 27.0 10.1 81 54-146 30-110 (425)
31 2hy6_A General control protein 27.3 1.1E+02 0.0038 18.7 4.2 29 105-133 2-30 (34)
32 1t3j_A Mitofusin 1; coiled coi 26.9 1.5E+02 0.0053 22.8 6.0 65 43-119 29-93 (96)
33 2q0o_C Probable transcriptiona 26.4 1.4E+02 0.0049 23.2 5.7 36 169-204 65-100 (107)
34 2oxj_A Hybrid alpha/beta pepti 26.2 1.2E+02 0.004 18.6 4.4 29 105-133 2-30 (34)
35 2wq1_A General control protein 24.8 1.2E+02 0.0042 18.3 5.0 25 62-86 8-32 (33)
36 2r2v_A GCN4 leucine zipper; co 24.5 1.3E+02 0.0043 18.4 4.4 28 105-132 2-29 (34)
37 3qne_A Seryl-tRNA synthetase, 24.5 2.4E+02 0.0081 28.5 8.6 78 57-146 36-113 (485)
38 3efg_A Protein SLYX homolog; x 23.7 2.2E+02 0.0075 20.9 7.6 54 32-86 7-60 (78)
39 3iv1_A Tumor susceptibility ge 23.6 2.2E+02 0.0077 21.0 7.8 36 49-84 41-76 (78)
40 2dq0_A Seryl-tRNA synthetase; 23.4 2.8E+02 0.0096 27.6 9.0 81 54-146 31-111 (455)
41 2dfs_A Myosin-5A; myosin-V, in 23.3 2.7E+02 0.0093 31.1 9.7 23 65-87 918-940 (1080)
42 2xs1_A Programmed cell death 6 23.2 6.7E+02 0.023 26.3 26.6 250 46-334 440-702 (704)
43 2a3q_A Hypothetical protein; M 22.2 3.6E+02 0.012 22.8 8.4 80 3-88 20-114 (170)
44 1nfn_A Apolipoprotein E3; lipi 22.1 3.8E+02 0.013 23.1 8.6 73 50-132 88-160 (191)
45 2oie_A RS21-C6; helix, hydrola 21.3 2.8E+02 0.0097 21.3 8.8 84 4-89 6-100 (111)
46 1gd2_E Transcription factor PA 21.0 2.2E+02 0.0075 20.5 5.6 32 53-84 35-66 (70)
47 2v4h_A NF-kappa-B essential mo 20.8 3.1E+02 0.011 21.6 9.1 67 18-85 38-107 (110)
48 1yf2_A Type I restriction-modi 20.8 1.2E+02 0.004 29.1 5.5 41 269-323 378-418 (425)
49 3c3g_A Alpha/beta peptide with 20.2 1.6E+02 0.0053 17.9 4.8 24 62-85 8-31 (33)
No 1
>3nrx_A Protein regulator of cytokinesis 1; spectrin fold, microtubule binding domain, protein binding; 1.75A {Homo sapiens} PDB: 3nry_A
Probab=99.76 E-value=5.1e-20 Score=154.80 Aligned_cols=71 Identities=28% Similarity=0.391 Sum_probs=63.0
Q ss_pred HHHHHHHHhchHHHHHHHHHHHHhHHHHHHHHhcCCchhhhccCCchhhhHHHHHHhHHhcc-cCCCcccccCCc
Q 013174 372 AKAKEEAHSRKEILDKVEKWMSACEEESWLEDYNRDENRYNASRGAHLNLKRAEKARILVNK-IPGMPRIPEQPC 445 (448)
Q Consensus 372 ~~lk~~~~~~k~il~~v~~~~~l~~e~~~le~~~~D~~R~~~~Rg~~~~Ll~eEk~Rk~i~k-lP~~~e~L~~~~ 445 (448)
++|+++|++++|||++|++|+.+|+++..|+++++|||||+ |||| +|++|||+|++|+| ||+|+++|+..+
T Consensus 3 ~rLk~~y~~~k~Ile~vekweelw~~~~eLE~~~~D~sR~~-~Rgg--~LlreEK~Rk~i~k~lP~l~~~L~~~i 74 (130)
T 3nrx_A 3 AALKNYYEVHKELFEGVQKWEETWRLFLEFERKASDPNRFT-NRGG--NLLKEEKQRAKLQKMLPKLEEELKARI 74 (130)
T ss_dssp CHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHcCChhhhh-ccch--hHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999 9999 99999999999999 999999997653
No 2
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=68.70 E-value=30 Score=27.02 Aligned_cols=41 Identities=22% Similarity=0.144 Sum_probs=33.7
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013174 221 QSKSISNDTLARLAKTVLALKEDKKQRLHKLQELATQLIDL 261 (448)
Q Consensus 221 ~~~~ls~~~l~~L~~~~~~L~~~K~~r~~~~~~l~~~l~~L 261 (448)
.++++|.+.+..|+..++.|+.+...-.+++..|-.++...
T Consensus 5 ~~~~~~~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~ 45 (100)
T 1go4_E 5 QSFLFSREEADTLRLKVEELEGERSRLEEEKRMLEAQLERR 45 (100)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778999999999999999999999888888888888665
No 3
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=67.80 E-value=8.3 Score=38.98 Aligned_cols=94 Identities=15% Similarity=0.200 Sum_probs=65.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCCCCCHHHHH-HHHHHHHHHHHHHH
Q 013174 101 TIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLSLGDQAPSVDESDLTLKKLD-EYQAQLQELQKEKS 179 (448)
Q Consensus 101 sL~~~l~~l~~~le~L~~~k~~R~~e~~~l~~~i~~l~~~L~~~~~~~~~~~~~~~~~lS~~~L~-~l~~~l~~L~~ek~ 179 (448)
+|..+...+...|++|+...++-.+...+...-...+++.|-...... .+.+-+..++. +|+.++..|+.+.+
T Consensus 54 lLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~------~dNdNtynE~S~ELRRrIqyLKekVd 127 (562)
T 3ghg_A 54 LIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSA------NNRDNTYNRVSEDLRSRIEVLKRKVI 127 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHH------HHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred hHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhh------hccchhHHHHHHHHHHHHHHHHHHHH
Confidence 566777888888888888888777777777777777777775432110 01111233333 78888999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHhC
Q 013174 180 DRLHKVLEFVSTVHDLCGVLG 200 (448)
Q Consensus 180 ~R~~~~~~l~~~I~~L~~~L~ 200 (448)
.-+..+..|.+.|.++...|.
T Consensus 128 nQlsnIrvLQsnLedq~~kIQ 148 (562)
T 3ghg_A 128 EKVQHIQLLQKNVRAQLVDMK 148 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888777765
No 4
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=60.65 E-value=28 Score=26.37 Aligned_cols=65 Identities=25% Similarity=0.314 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013174 60 AKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDV 130 (448)
Q Consensus 60 ~~~k~~l~~~I~~~~~el~~L~~eLg~~~~~~~~~~~~~~~sL~~~l~~l~~~le~L~~~k~~R~~e~~~l 130 (448)
....+.|-..|+.+..++..|-..|++|.+... +...-..+...+..+...|+. ..+|..++..+
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~ladp~~y~~--d~~~~~~l~~~l~~~e~eLe~----~~erWeeLe~~ 85 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVADASFFSQ--PHEQTQKVLADMAAAEQELEQ----AFERWEYLEAL 85 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGS--CHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcccccC--CHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHh
Confidence 344567888899999999999999999986531 111112344444444444444 33455555444
No 5
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=60.17 E-value=13 Score=42.22 Aligned_cols=13 Identities=8% Similarity=0.353 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH
Q 013174 364 LADMDNQIAKAKE 376 (448)
Q Consensus 364 L~~~E~ei~~lk~ 376 (448)
++.+..+|..+..
T Consensus 1153 le~L~~~Ieel~~ 1165 (1184)
T 1i84_S 1153 LEALKTELEDTLD 1165 (1184)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHhh
Confidence 3444444444433
No 6
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=58.69 E-value=1.1e+02 Score=27.90 Aligned_cols=113 Identities=12% Similarity=0.128 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 013174 104 EQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKSDRLH 183 (448)
Q Consensus 104 ~~l~~l~~~le~L~~~k~~R~~e~~~l~~~i~~l~~~L~~~~~~~~~~~~~~~~~lS~~~L~~l~~~l~~L~~ek~~R~~ 183 (448)
-.+..+..++..++.....--.++.++...+..+ ...+..++..+..++.++...-.
T Consensus 11 ~~LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l-----------------------~~~~~~~~~~l~d~~~~~~~~e~ 67 (256)
T 3na7_A 11 IEISHLDKEIDSLEPLIREKRKDLDKALNDKEAK-----------------------NKAILNLEEEKLALKLQVSKNEQ 67 (256)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667777777777666666666666665554 55666777777778887777777
Q ss_pred HHHHHHHHHHHHHHHhCCCccchhhhccCCCCCCCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013174 184 KVLEFVSTVHDLCGVLGMDFFSTVTEVHPSLNDSTGVQSKSISNDTLARLAKTVLALKEDKKQRLHKLQELATQLIDL 261 (448)
Q Consensus 184 ~~~~l~~~I~~L~~~L~~~~~~~~~~i~~sl~~~~~~~~~~ls~~~l~~L~~~~~~L~~~K~~r~~~~~~l~~~l~~L 261 (448)
.+..+...|...-..|+. +. ++.-+..|...+..+.........++.++...+..+
T Consensus 68 ~i~~~~~ri~~~~~~l~~--------v~--------------~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~ 123 (256)
T 3na7_A 68 TLQDTNAKIASIQKKMSE--------IK--------------SERELRSLNIEEDIAKERSNQANREIENLQNEIKRK 123 (256)
T ss_dssp HHHHHHHHHHHHHHHHHH--------CS--------------SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHc--------cC--------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888888777777741 00 222355556666655555555555555555555443
No 7
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=57.53 E-value=25 Score=39.95 Aligned_cols=33 Identities=15% Similarity=0.133 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013174 107 AAIAPALEQLWKQKEERVKEFSDVQSQIQKICG 139 (448)
Q Consensus 107 ~~l~~~le~L~~~k~~R~~e~~~l~~~i~~l~~ 139 (448)
..+...+..+..++.....++.++..++..+-.
T Consensus 909 ~~~e~~l~~l~~~~~~Le~~l~ele~elee~ee 941 (1184)
T 1i84_S 909 AEAEEMRVRLAAKKQELEEILHEMEARIEEEEE 941 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444433
No 8
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=57.50 E-value=63 Score=31.32 Aligned_cols=95 Identities=11% Similarity=0.169 Sum_probs=64.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013174 101 TIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKSD 180 (448)
Q Consensus 101 sL~~~l~~l~~~le~L~~~k~~R~~e~~~l~~~i~~l~~~L~~~~~~~~~~~~~~~~~lS~~~L~~l~~~l~~L~~ek~~ 180 (448)
+|.++...+...++.|+....+-.+...+.-.-+..+.+.|........ +....=.+-.+.|+.++..|+...+.
T Consensus 57 ~Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~-----dndn~~~e~s~eLe~~i~~lk~~V~~ 131 (390)
T 1deq_A 57 LIDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKAN-----NNDNTFKQINEDLRSRIEILRRKVIE 131 (390)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhc-----cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666677788888888887777666666666666667666655432111 11122245666888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHhC
Q 013174 181 RLHKVLEFVSTVHDLCGVLG 200 (448)
Q Consensus 181 R~~~~~~l~~~I~~L~~~L~ 200 (448)
-+..+..|...|.++...|.
T Consensus 132 q~~~ir~Lq~~l~~q~~kiq 151 (390)
T 1deq_A 132 QVQRINLLQKNVRDQLVDMK 151 (390)
T ss_pred HhHHHHHHHHHHHHHHHHHH
Confidence 77777777777777766654
No 9
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=55.66 E-value=38 Score=22.26 Aligned_cols=36 Identities=19% Similarity=0.237 Sum_probs=19.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHh--H-HHHHHHHHHHHH
Q 013174 293 GALALDLIEQAEVEVERLDQLKASR--M-KEIAFKRQGELE 330 (448)
Q Consensus 293 ~~ls~~~i~~l~~El~RL~~lK~~~--i-k~li~~~r~el~ 330 (448)
++.+...++.++.|+ |.+++++. + .++|+..++++.
T Consensus 2 ~~~~~~dle~~KqEI--L~E~RkElqK~K~EIIeAi~~El~ 40 (45)
T 1use_A 2 SSSDYSDLQRVKQEL--LEEVKKELQKVKEEIIEAFVQELR 40 (45)
T ss_dssp -CCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777 55555541 1 145555565543
No 10
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=54.70 E-value=12 Score=25.36 Aligned_cols=25 Identities=28% Similarity=0.522 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHH-HhchHHHHHHH
Q 013174 365 ADMDNQIAKAKEEA-HSRKEILDKVE 389 (448)
Q Consensus 365 ~~~E~ei~~lk~~~-~~~k~il~~v~ 389 (448)
..+|.||..+...| ..|+||++.|+
T Consensus 24 ~~Me~Ei~elr~RY~~KRqPIldAi~ 49 (51)
T 2jo8_A 24 PMMEQEIEEIRQKYQSKRQPILDAIE 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhHhhHHHHHh
Confidence 46889999998877 56899999886
No 11
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=52.47 E-value=81 Score=24.56 Aligned_cols=37 Identities=14% Similarity=0.186 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013174 159 LTLKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDL 195 (448)
Q Consensus 159 lS~~~L~~l~~~l~~L~~ek~~R~~~~~~l~~~I~~L 195 (448)
+|.+.+..++..|+.|+.|...=......+-..+.+.
T Consensus 9 ~~~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~ 45 (100)
T 1go4_E 9 FSREEADTLRLKVEELEGERSRLEEEKRMLEAQLERR 45 (100)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999887666666666655444
No 12
>2lw9_A Unconventionnal myosin-X; MYO10 anti-CC, motor protein; NMR {Homo sapiens}
Probab=47.28 E-value=38 Score=22.54 Aligned_cols=39 Identities=21% Similarity=0.239 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 013174 297 LDLIEQAEVEVERLDQLKASRMKEIAFKRQGELEEIFAR 335 (448)
Q Consensus 297 ~~~i~~l~~El~RL~~lK~~~ik~li~~~r~el~elWd~ 335 (448)
..-|-.++.|+++|+..|...+..+-+..+.+|..+-|.
T Consensus 5 ~EEILRLErEIE~Lqrqke~~~~~L~e~s~~eL~~~RD~ 43 (51)
T 2lw9_A 5 VEEILRLEKEIEDLQRMKEQQELSLTEASLQKLQERRDQ 43 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 456788999999999999999988888888888776553
No 13
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=44.85 E-value=1.1e+02 Score=23.82 Aligned_cols=86 Identities=17% Similarity=0.181 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013174 53 KRKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQS 132 (448)
Q Consensus 53 ~~~v~e~~~~k~~l~~~I~~~~~el~~L~~eLg~~~~~~~~~~~~~~~sL~~~l~~l~~~le~L~~~k~~R~~e~~~l~~ 132 (448)
...+.+....+..+...+..+...+..+-.. | .++|.+. ++-.+.........+..++..+......-..++..+..
T Consensus 16 ~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~~-g-~~CPvCg-s~l~~~~~~~~i~~~~~~l~~l~~~i~~l~~~i~~l~~ 92 (112)
T 1l8d_A 16 EEERNEITQRIGELKNKIGDLKTAIEELKKA-K-GKCPVCG-RELTDEHREELLSKYHLDLNNSKNTLAKLIDRKSELER 92 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-S-EECTTTC-CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-C-CCCCCCC-CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555666666555555443211 1 1222210 11011111123444555555555555444455555555
Q ss_pred HHHHHHhHh
Q 013174 133 QIQKICGEI 141 (448)
Q Consensus 133 ~i~~l~~~L 141 (448)
.+..+-..+
T Consensus 93 ~~~~l~~~~ 101 (112)
T 1l8d_A 93 ELRRIDMEI 101 (112)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 554444433
No 14
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=44.73 E-value=2.7e+02 Score=28.30 Aligned_cols=74 Identities=12% Similarity=0.108 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013174 53 KRKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQS 132 (448)
Q Consensus 53 ~~~v~e~~~~k~~l~~~I~~~~~el~~L~~eLg~~~~~~~~~~~~~~~sL~~~l~~l~~~le~L~~~k~~R~~e~~~l~~ 132 (448)
+..+...+.+.....+.++..+.++......+....... .... ..+...+..++...+.+..+....++
T Consensus 462 ~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~--------~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~ 530 (597)
T 3oja_B 462 RAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGL--------ARSS---DNLNKVFTHLKERQAFKLRETQARRT 530 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSS--------SCHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCcccccc--------CCHH---HHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 344444555555555666666666666555555443221 1222 33344444444444445555555555
Q ss_pred HHHHH
Q 013174 133 QIQKI 137 (448)
Q Consensus 133 ~i~~l 137 (448)
.++..
T Consensus 531 ~~~~~ 535 (597)
T 3oja_B 531 EADAK 535 (597)
T ss_dssp HHHHH
T ss_pred hhhhh
Confidence 54443
No 15
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=42.86 E-value=58 Score=20.14 Aligned_cols=31 Identities=6% Similarity=0.100 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013174 105 QLAAIAPALEQLWKQKEERVKEFSDVQSQIQ 135 (448)
Q Consensus 105 ~l~~l~~~le~L~~~k~~R~~e~~~l~~~i~ 135 (448)
+.+.|..++++|..++.+.-.++..++..+.
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKKKNA 32 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 4577889999999998887777777776543
No 16
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=42.85 E-value=2.8e+02 Score=28.08 Aligned_cols=38 Identities=13% Similarity=0.082 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013174 161 LKKLDEYQAQLQELQKEKSDRLHKVLEFVSTVHDLCGV 198 (448)
Q Consensus 161 ~~~L~~l~~~l~~L~~ek~~R~~~~~~l~~~I~~L~~~ 198 (448)
.+.++.++..+..+++..+...+++.++..+...+-.+
T Consensus 536 ~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~ 573 (597)
T 3oja_B 536 QKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQK 573 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 34555555666666666666665555555554444333
No 17
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=41.93 E-value=57 Score=22.22 Aligned_cols=30 Identities=17% Similarity=0.275 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhc
Q 013174 113 LEQLWKQKEERVKEFSDVQSQIQKICGEIA 142 (448)
Q Consensus 113 le~L~~~k~~R~~e~~~l~~~i~~l~~~L~ 142 (448)
++.|+.+.++-..++..+..++..+|..|.
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444445557777777777777664
No 18
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=38.81 E-value=1.4e+02 Score=23.22 Aligned_cols=88 Identities=13% Similarity=0.156 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCCCCCH----HHHHHHHHHHHHHHHHHH
Q 013174 104 EQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLSLGDQAPSVDESDLTL----KKLDEYQAQLQELQKEKS 179 (448)
Q Consensus 104 ~~l~~l~~~le~L~~~k~~R~~e~~~l~~~i~~l~~~L~~~~~~~~~~~~~~~~~lS~----~~L~~l~~~l~~L~~ek~ 179 (448)
..+..+...+..|+..+..-..++..+...+..+-..-+..| +++..++. ..+..+...+..++.+..
T Consensus 10 ~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~~g~~CP--------vCgs~l~~~~~~~~i~~~~~~l~~l~~~i~ 81 (112)
T 1l8d_A 10 TKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKKAKGKCP--------VCGRELTDEHREELLSKYHLDLNNSKNTLA 81 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECT--------TTCCEECHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC--------CCCCcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666555555555555554444422100112 23443443 344555555666655555
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 013174 180 DRLHKVLEFVSTVHDLCGVL 199 (448)
Q Consensus 180 ~R~~~~~~l~~~I~~L~~~L 199 (448)
.=...+..+...+..+-..+
T Consensus 82 ~l~~~i~~l~~~~~~l~~~~ 101 (112)
T 1l8d_A 82 KLIDRKSELERELRRIDMEI 101 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 54444555555554444443
No 19
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=37.94 E-value=43 Score=26.09 Aligned_cols=21 Identities=10% Similarity=0.221 Sum_probs=15.5
Q ss_pred CCcHHHHHHHHHHHHHHHHHH
Q 013174 99 SGTIKEQLAAIAPALEQLWKQ 119 (448)
Q Consensus 99 ~~sL~~~l~~l~~~le~L~~~ 119 (448)
..++..++..|+..+..|+.+
T Consensus 69 R~~~~~klr~Yk~dL~~lk~e 89 (102)
T 1vcs_A 69 RGMYSNRMRSYKQEMGKLETD 89 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 347777888888888777665
No 20
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=36.60 E-value=2.8e+02 Score=28.05 Aligned_cols=35 Identities=9% Similarity=-0.003 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 013174 297 LDLIEQAEVEVERLDQLKASRMKEIAFKRQGELEEI 332 (448)
Q Consensus 297 ~~~i~~l~~El~RL~~lK~~~ik~li~~~r~el~el 332 (448)
...|..++.+|+.-- .....|+..|.+.+.+|..|
T Consensus 116 RRrIqyLKekVdnQl-snIrvLQsnLedq~~kIQRL 150 (562)
T 3ghg_A 116 RSRIEVLKRKVIEKV-QHIQLLQKNVRAQLVDMKRL 150 (562)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 446666666666554 33344566666666666655
No 21
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=35.17 E-value=2.2e+02 Score=24.48 Aligned_cols=65 Identities=14% Similarity=0.042 Sum_probs=45.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhccccccccCCCCCCCchHHHHHH
Q 013174 223 KSISNDTLARLAKTVLALKEDKKQRLHKLQELATQLIDLWNLMDTPSEERRLFDHVTCNISAYVDGVTVPGALALDLIEQ 302 (448)
Q Consensus 223 ~~ls~~~l~~L~~~~~~L~~~K~~r~~~~~~l~~~l~~LW~~L~~~~ee~~~F~~~~~~i~~s~~~~~~~~~ls~~~i~~ 302 (448)
.+||++.-+++++..+++........+++...+.++..|+..= ..+...|++
T Consensus 66 LnLT~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a~----------------------------~~DeakI~a 117 (175)
T 3lay_A 66 SPLTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTAS----------------------------SPDTAKINA 117 (175)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS----------------------------SCCHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----------------------------CCCHHHHHH
Confidence 6799999999999999988887777777777777776665432 234567777
Q ss_pred HHHHHHHHHHHHH
Q 013174 303 AEVEVERLDQLKA 315 (448)
Q Consensus 303 l~~El~RL~~lK~ 315 (448)
+..|+..|+....
T Consensus 118 L~~Ei~~Lr~qL~ 130 (175)
T 3lay_A 118 VAKEMESLGQKLD 130 (175)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777776665443
No 22
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=34.19 E-value=1.9e+02 Score=23.61 Aligned_cols=125 Identities=11% Similarity=0.147 Sum_probs=63.2
Q ss_pred HHHHHHhcCCCHHHHHHHHHHhccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcC
Q 013174 258 LIDLWNLMDTPSEERRLFDHVTCNISAYVDGVTVPGALALDLIEQAEVEVERLDQLKASRMKEIAFKRQGELEEIFARAH 337 (448)
Q Consensus 258 l~~LW~~L~~~~ee~~~F~~~~~~i~~s~~~~~~~~~ls~~~i~~l~~El~RL~~lK~~~ik~li~~~r~el~elWd~~~ 337 (448)
|.++-..+|++....+-+... ..+.|...+-...-.+|.+.+..+. +| ..+..++
T Consensus 5 I~e~A~~~gvs~~tLR~Ye~~-GLl~p~~r~~~g~R~Y~~~dl~~l~----------------~I--------~~lr~~G 59 (142)
T 3gp4_A 5 IKEASEKSGVSADTIRYYERI-GLIPPIHRNESGVRKFGAEDLRWIL----------------FT--------RQMRRAG 59 (142)
T ss_dssp HHHHHHHHTSCHHHHHHHHHH-TSSCCCCBCTTSCBCBCHHHHHHHH----------------HH--------HHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHHC-CCCCCCcCCCCCCeeeCHHHHHHHH----------------HH--------HHHHHcC
Confidence 455667788888766655443 3444433332334456666665441 11 1123456
Q ss_pred CCCchHHHHHHhhhhhcCCCCChHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhHHHHHHHHhcCCchhhh
Q 013174 338 IEIDPVAAREKIMTLIDSGNVEPAELLADMDNQIAKAKEEAHSRKEILDKVEKWMSACEEESWLEDYNRDENRYN 412 (448)
Q Consensus 338 ~~~e~~~~~~~~~~~~~s~~~~~e~lL~~~E~ei~~lk~~~~~~k~il~~v~~~~~l~~e~~~le~~~~D~~R~~ 412 (448)
+|.++-. .+......|+....+..+.++..+..+.+....-+.+.+.++.....+++ .+....+..+.|+
T Consensus 60 ~sL~eIk---~~l~~~~~~~~~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~--~~~~~~~~~~~~~ 129 (142)
T 3gp4_A 60 LSIEALI---DYLALFREGEHTLEARAELLKKQRIELKNRIDVMQEALDRLDFKIDNYDT--HLIPAQEELKDFN 129 (142)
T ss_dssp CCHHHHH---HHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--THHHHHHHHHHHH
T ss_pred CCHHHHH---HHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhcccC
Confidence 6654322 22222222322445556666666666666666666666666666555543 2333334444444
No 23
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=32.98 E-value=84 Score=19.13 Aligned_cols=29 Identities=14% Similarity=0.215 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013174 105 QLAAIAPALEQLWKQKEERVKEFSDVQSQ 133 (448)
Q Consensus 105 ~l~~l~~~le~L~~~k~~R~~e~~~l~~~ 133 (448)
+.+.|..++++|-.++.+.-.++..++..
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk~l 30 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIXKL 30 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 45678888999888877766666666543
No 24
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=30.36 E-value=88 Score=28.35 Aligned_cols=49 Identities=16% Similarity=0.329 Sum_probs=41.3
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCC
Q 013174 99 SGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLSL 147 (448)
Q Consensus 99 ~~sL~~~l~~l~~~le~L~~~k~~R~~e~~~l~~~i~~l~~~L~~~~~~ 147 (448)
-..+..++..++..|+++-.....=.++=-..+.+.+.+|..||.+|..
T Consensus 9 ~~~~~~Ql~~F~~~L~~FA~kH~~eI~~dp~fR~~F~~mc~siGVDPla 57 (234)
T 3cuq_A 9 LAQMSKQLDMFKTNLEEFASKHKQEIRKNPEFRVQFQDMCATIGVDPLA 57 (234)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTCCTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHHcCCCccc
Confidence 3467789999999999998888777777777889999999999999864
No 25
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=29.13 E-value=89 Score=19.10 Aligned_cols=29 Identities=14% Similarity=0.314 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013174 105 QLAAIAPALEQLWKQKEERVKEFSDVQSQ 133 (448)
Q Consensus 105 ~l~~l~~~le~L~~~k~~R~~e~~~l~~~ 133 (448)
+.+.|..++++|-.++++-..++..++..
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk~l 30 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIKKL 30 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 45678889999988888777777666653
No 26
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=29.02 E-value=1.1e+02 Score=20.73 Aligned_cols=35 Identities=6% Similarity=0.126 Sum_probs=24.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013174 158 DLTLKKLDEYQAQLQELQKEKSDRLHKVLEFVSTV 192 (448)
Q Consensus 158 ~lS~~~L~~l~~~l~~L~~ek~~R~~~~~~l~~~I 192 (448)
.|+....+.|+..+..|+.+...=...+.++...+
T Consensus 15 ~p~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 15 TPENPEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888888887766555555555443
No 27
>1vmg_A Hypothetical protein SSO3215; 13816655, MAZG nucleotide pyrophosphohydrolase, structural G JCSG, protein structure initiative, PSI; HET: MSE; 1.46A {Sulfolobus solfataricus} SCOP: a.204.1.2
Probab=28.79 E-value=1.7e+02 Score=22.30 Aligned_cols=67 Identities=13% Similarity=0.062 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhCCChHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Q 013174 20 LHKLQEIWDEVGENDEE---RDKMLLQIEKECLDVYKRKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSI 89 (448)
Q Consensus 20 l~~L~~IWdeiG~~~~e---r~~~~~~l~~~~~~~~~~~v~e~~~~k~~l~~~I~~~~~el~~L~~eLg~~~~ 89 (448)
+.+++.--..+|++-.. -...+..+.+++.++...+-. ..++.+..++.++.--+..|++.+|+.+.
T Consensus 17 l~~lq~~a~~~gfdw~~~~~~~~~~~kl~EE~gEl~eai~~---~~~~~i~eELgDvLf~lv~lA~~lgiD~e 86 (95)
T 1vmg_A 17 LKELQSKMKEMYFEKDSQRGIYATFTWLVEEVGELAEALLS---NNLDSIQEELADVIAWTVSIANLEGIDIE 86 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHHHHHHhCCCCCcccCHHHHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHHHHHHCcCHH
Confidence 56677777778876553 244455666666555444322 24677899999999999999999998763
No 28
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=27.67 E-value=1e+02 Score=19.09 Aligned_cols=30 Identities=7% Similarity=0.109 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013174 106 LAAIAPALEQLWKQKEERVKEFSDVQSQIQ 135 (448)
Q Consensus 106 l~~l~~~le~L~~~k~~R~~e~~~l~~~i~ 135 (448)
.+.|..++++|-.++.+.-.++..++..+.
T Consensus 3 MnQLE~kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 467888999999998887777777766543
No 29
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil, contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=27.42 E-value=3.2e+02 Score=24.10 Aligned_cols=144 Identities=13% Similarity=0.185 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCCCC
Q 013174 20 LHKLQEIWDEVGENDEERDKMLLQIEKECLDVYKRKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTS 99 (448)
Q Consensus 20 l~~L~~IWdeiG~~~~er~~~~~~l~~~~~~~~~~~v~e~~~~k~~l~~~I~~~~~el~~L~~eLg~~~~~~~~~~~~~~ 99 (448)
+.+|+.-|+.+.-.-..|...+.... ......+..+-++......+..=+..--..|+.+.+.. .....
T Consensus 96 ~~~l~~~W~~L~~~~~~R~~~L~~~l--------~~~~~~d~l~~qF~~~a~~~~~Wl~~~e~~l~~~~~~~---d~e~v 164 (250)
T 1quu_A 96 CQKICDQWDRLGTLTQKRREALERME--------KLLETIDQLHLEFAKRAAPFNNWMEGAMEDLQDMFIVH---SIEEI 164 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCCCC---STTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccccccC---CHHHH
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhc-----CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 013174 100 GTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIA-----GNLSLGDQAPSVDESDLTLKKLDEYQAQLQEL 174 (448)
Q Consensus 100 ~sL~~~l~~l~~~le~L~~~k~~R~~e~~~l~~~i~~l~~~L~-----~~~~~~~~~~~~~~~~lS~~~L~~l~~~l~~L 174 (448)
..|......+...+..+.. +...+..+...+..+....+ ..|+ +...+..+...-+.+
T Consensus 165 ~~ll~~h~~~~~~l~~~~~----~~~~i~~l~~~~~~l~~~~~~~~~~~~~~-------------~~~~~~~l~~~W~~L 227 (250)
T 1quu_A 165 QSLITAHEQFKATLPEADG----ERQSIMAIQNEVEKVIQSYNIRISSSNPY-------------STVTMDELRTKWDKV 227 (250)
T ss_dssp HHHHHHHHHHHTHHHHHHH----HHHHHHHHHHHHHHHHHHSCTTSCCSCTT-------------CSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhcccccCCCCCc-------------ccCcHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013174 175 QKEKSDRLHKVLEFVST 191 (448)
Q Consensus 175 ~~ek~~R~~~~~~l~~~ 191 (448)
..-...|...+......
T Consensus 228 ~~~~~~R~~~L~~~l~~ 244 (250)
T 1quu_A 228 KQLVPIRDQSLQEELAR 244 (250)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
No 30
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=27.38 E-value=3.1e+02 Score=26.97 Aligned_cols=81 Identities=17% Similarity=0.272 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013174 54 RKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQ 133 (448)
Q Consensus 54 ~~v~e~~~~k~~l~~~I~~~~~el~~L~~eLg~~~~~~~~~~~~~~~sL~~~l~~l~~~le~L~~~k~~R~~e~~~l~~~ 133 (448)
..|-+....+..+..++..++++-+.+..++|.-.... .....|+.+...+..++..+..+ +..+..+
T Consensus 30 ~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~-------~~~~~~~ 97 (425)
T 2dq3_A 30 DKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREG-----KDTTEIQNRVKELKEEIDRLEEE-------LRKVEEE 97 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSC-----SCTTTSTTHHHHHHHHHHHHHHH-------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----ccHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH
Confidence 34445666788899999999999999999998632221 11235556666666666666554 6777777
Q ss_pred HHHHHhHhcCCCC
Q 013174 134 IQKICGEIAGNLS 146 (448)
Q Consensus 134 i~~l~~~L~~~~~ 146 (448)
+..+...|.-.|+
T Consensus 98 ~~~~~~~ipN~~~ 110 (425)
T 2dq3_A 98 LKNTLLWIPNLPH 110 (425)
T ss_dssp HHHHHHTSCCCCC
T ss_pred HHHHHHhCCCCCC
Confidence 7777777766554
No 31
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=27.26 E-value=1.1e+02 Score=18.66 Aligned_cols=29 Identities=14% Similarity=0.193 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013174 105 QLAAIAPALEQLWKQKEERVKEFSDVQSQ 133 (448)
Q Consensus 105 ~l~~l~~~le~L~~~k~~R~~e~~~l~~~ 133 (448)
+.+.|..++++|-.++.+.-.++..++.-
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~~l 30 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLAKA 30 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 45678889999988887766666665543
No 32
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=26.87 E-value=1.5e+02 Score=22.77 Aligned_cols=65 Identities=18% Similarity=0.291 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCCCCCcHHHHHHHHHHHHHHHHHH
Q 013174 43 QIEKECLDVYKRKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQ 119 (448)
Q Consensus 43 ~l~~~~~~~~~~~v~e~~~~k~~l~~~I~~~~~el~~L~~eLg~~~~~~~~~~~~~~~sL~~~l~~l~~~le~L~~~ 119 (448)
++.+++..++.+.-.+...-...+..+|+.+..+++.|-.... ...+|+.+-..|...|+.+.+.
T Consensus 29 QVQqELs~tfarLc~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs------------~aK~LRnKA~~L~~eLe~F~~~ 93 (96)
T 1t3j_A 29 QVQQEMATTFARLCQQVDMTQKHLEEEIARLSKEIDQLEKMQN------------NSKLLRNKAVQLESELENFSKQ 93 (96)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HhHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666666666666777777888877777776654321 2345566666666666666543
No 33
>2q0o_C Probable transcriptional repressor TRAM; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=26.37 E-value=1.4e+02 Score=23.24 Aligned_cols=36 Identities=25% Similarity=0.189 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Q 013174 169 AQLQELQKEKSDRLHKVLEFVSTVHDLCGVLGMDFF 204 (448)
Q Consensus 169 ~~l~~L~~ek~~R~~~~~~l~~~I~~L~~~L~~~~~ 204 (448)
..++.++.++..|+.+..-....+..|.+.||.-|.
T Consensus 65 avl~~~q~eYi~a~~e~~AQq~~lstLid~LGyvPk 100 (107)
T 2q0o_C 65 PVLQTLQDEYVARQKRSEAQQEELSDILDALGFVPD 100 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 367788999999999999999999999999997554
No 34
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=26.17 E-value=1.2e+02 Score=18.56 Aligned_cols=29 Identities=7% Similarity=0.212 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013174 105 QLAAIAPALEQLWKQKEERVKEFSDVQSQ 133 (448)
Q Consensus 105 ~l~~l~~~le~L~~~k~~R~~e~~~l~~~ 133 (448)
+.+.|..++++|-.++++...++..++..
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk~l 30 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLKXL 30 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 35677888888888877766666665543
No 35
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=24.83 E-value=1.2e+02 Score=18.34 Aligned_cols=25 Identities=16% Similarity=0.114 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC
Q 013174 62 SRAQLLQALSDAKIELASLLSALGE 86 (448)
Q Consensus 62 ~k~~l~~~I~~~~~el~~L~~eLg~ 86 (448)
...++...+..+..++..+..-+|.
T Consensus 8 KVEell~~~~~le~EV~Rl~~ll~~ 32 (33)
T 2wq1_A 8 KIEENTSKIYHNTNEIARNTKLVGE 32 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhcC
Confidence 3444666666666666776666664
No 36
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=24.54 E-value=1.3e+02 Score=18.42 Aligned_cols=28 Identities=21% Similarity=0.298 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013174 105 QLAAIAPALEQLWKQKEERVKEFSDVQS 132 (448)
Q Consensus 105 ~l~~l~~~le~L~~~k~~R~~e~~~l~~ 132 (448)
+++.+..+++++-.++.+--.++..++.
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4567888888888887665555554443
No 37
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=24.46 E-value=2.4e+02 Score=28.46 Aligned_cols=78 Identities=9% Similarity=0.155 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013174 57 EQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQK 136 (448)
Q Consensus 57 ~e~~~~k~~l~~~I~~~~~el~~L~~eLg~~~~~~~~~~~~~~~sL~~~l~~l~~~le~L~~~k~~R~~e~~~l~~~i~~ 136 (448)
-+....+..+..++..++++.+.+..+||...-.. .....|+.+...+..++..+..+ +.++..++..
T Consensus 36 ~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~-----~~~~~l~~~~~~l~~~i~~le~~-------~~~~~~~~~~ 103 (485)
T 3qne_A 36 IAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAK-----EDAKDLIAEKEKLSNEKKEIIEK-------EAEADKNLRS 103 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----CCCHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-----ccHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 34455566677777777777777777776532111 11234556666666666655554 7778888888
Q ss_pred HHhHhcCCCC
Q 013174 137 ICGEIAGNLS 146 (448)
Q Consensus 137 l~~~L~~~~~ 146 (448)
+...|.-.|+
T Consensus 104 ~l~~iPN~~~ 113 (485)
T 3qne_A 104 KINQVGNIVH 113 (485)
T ss_dssp HHTTSCCCCC
T ss_pred HHHhCCCCCC
Confidence 7777765544
No 38
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=23.68 E-value=2.2e+02 Score=20.89 Aligned_cols=54 Identities=19% Similarity=0.261 Sum_probs=36.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 013174 32 ENDEERDKMLLQIEKECLDVYKRKVEQAAKSRAQLLQALSDAKIELASLLSALGE 86 (448)
Q Consensus 32 ~~~~er~~~~~~l~~~~~~~~~~~v~e~~~~k~~l~~~I~~~~~el~~L~~eLg~ 86 (448)
+.+.+-+.++..|+-. ..+....|++.+....+-.+.|..++.++..|...+..
T Consensus 7 ~~~~~le~Ri~~LE~k-lAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~ 60 (78)
T 3efg_A 7 PRDQELEARLVELETR-LSFQEQALTELSEALADARLTGARNAELIRHLLEDLGK 60 (78)
T ss_dssp -CCTHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred CCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344455566544 44667788888888888888888888888888887754
No 39
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=23.57 E-value=2.2e+02 Score=20.95 Aligned_cols=36 Identities=19% Similarity=0.099 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013174 49 LDVYKRKVEQAAKSRAQLLQALSDAKIELASLLSAL 84 (448)
Q Consensus 49 ~~~~~~~v~e~~~~k~~l~~~I~~~~~el~~L~~eL 84 (448)
..-+..||.+...+.+.+..+|..++.....|-..+
T Consensus 41 ~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~~l 76 (78)
T 3iv1_A 41 HQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSSAL 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556778899999999999999999988888776654
No 40
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=23.43 E-value=2.8e+02 Score=27.57 Aligned_cols=81 Identities=10% Similarity=0.163 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013174 54 RKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQ 133 (448)
Q Consensus 54 ~~v~e~~~~k~~l~~~I~~~~~el~~L~~eLg~~~~~~~~~~~~~~~sL~~~l~~l~~~le~L~~~k~~R~~e~~~l~~~ 133 (448)
..|-+....+..+..++..++++-+.+..+||.-.... .....|+.+...+..++..+.. ++..+..+
T Consensus 31 ~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~-------~~~~~~~~ 98 (455)
T 2dq0_A 31 DEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKG-----EPVDELLAKSREIVKRIGELEN-------EVEELKKK 98 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC-----CCTHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-----ccHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
Confidence 34445566677788888888888888888887522111 1123555555666666655554 47778888
Q ss_pred HHHHHhHhcCCCC
Q 013174 134 IQKICGEIAGNLS 146 (448)
Q Consensus 134 i~~l~~~L~~~~~ 146 (448)
+..+...|+-.|+
T Consensus 99 ~~~~~~~ipN~~~ 111 (455)
T 2dq0_A 99 IDYYLWRLPNITH 111 (455)
T ss_dssp HHHHHTTSCCCCC
T ss_pred HHHHHHhCCCCCC
Confidence 8888777766554
No 41
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=23.34 E-value=2.7e+02 Score=31.12 Aligned_cols=23 Identities=9% Similarity=0.098 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCC
Q 013174 65 QLLQALSDAKIELASLLSALGEK 87 (448)
Q Consensus 65 ~l~~~I~~~~~el~~L~~eLg~~ 87 (448)
.+......+..++..|-..|+..
T Consensus 918 ~l~~~~~~LE~kl~eLq~rL~~~ 940 (1080)
T 2dfs_A 918 RYKKLHIGLENKIMQLQRKIDEQ 940 (1080)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556666666666666543
No 42
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Probab=23.21 E-value=6.7e+02 Score=26.30 Aligned_cols=250 Identities=10% Similarity=0.071 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 013174 46 KECLDVYKRKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVK 125 (448)
Q Consensus 46 ~~~~~~~~~~v~e~~~~k~~l~~~I~~~~~el~~L~~eLg~~~~~~~~~~~~~~~sL~~~l~~l~~~le~L~~~k~~R~~ 125 (448)
....+-+......-+..-++....+..-..+...+....|..-.... +..-..++...+..|+..++....-=..-..
T Consensus 440 ~~~~~~l~~l~~~~~~~L~e~~~~L~~E~~ed~~~R~k~g~~w~r~~--S~~~~~~l~~~~~~~~~~l~~A~~sD~~v~~ 517 (704)
T 2xs1_A 440 DQLIKELPELLQRNREILDESLRLLDEEEATDNDLRAKFKERWQRTP--SNELYKPLRAEGTNFRTVLDKAVQADGQVKE 517 (704)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCSCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC--cHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q ss_pred HHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
Q 013174 126 EFSDVQSQIQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQKEKSDRLHKVLEFVS-------TVHDLCGV 198 (448)
Q Consensus 126 e~~~l~~~i~~l~~~L~~~~~~~~~~~~~~~~~lS~~~L~~l~~~l~~L~~ek~~R~~~~~~l~~-------~I~~L~~~ 198 (448)
.|......+.-||.-...-....+ .............+..|+..+..+..-+.+|...+.+++. .+....+.
T Consensus 518 ~~~~~~~~l~~L~~~~~~l~~~~p-~~~~~~~~~~~~~~~~L~~~l~~l~~l~~~R~~~~~~lk~~~ddI~~~ll~~~~~ 596 (704)
T 2xs1_A 518 CYQSHRDTIVLLCKPEPELNAAIP-SANPAKTMQGSEVVNVLKSLLSNLDEVKKEREGLENDLKSVNFDMTSKFLTALAQ 596 (704)
T ss_dssp HHHTTHHHHHHHTSCHHHHHHTSC-CCCCCGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHhhCc-cCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccHHHHHHHhh
Q ss_pred hCCCccchhhhccCCCCCCCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CCCHHHH
Q 013174 199 LGMDFFSTVTEVHPSLNDSTGVQSKSISNDTLARLAKTVLALKEDKKQRLHKLQELATQLIDLWNLM------DTPSEER 272 (448)
Q Consensus 199 L~~~~~~~~~~i~~sl~~~~~~~~~~ls~~~l~~L~~~~~~L~~~K~~r~~~~~~l~~~l~~LW~~L------~~~~ee~ 272 (448)
.|...+..+ . -+.|.+..+.+...-.+.+.+=..+..+|...|..+ +-...+|
T Consensus 597 ~~~~~~e~l---f------------------~~eL~k~~~~~~~~i~~~~~~Q~~ll~~i~~~~~~f~~~~~~~~~~~~r 655 (704)
T 2xs1_A 597 DGVINEEAL---S------------------VTELDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKMKQSNNEANLR 655 (704)
T ss_dssp SSCCCHHHH---H------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred cccccHHHH---H------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHH
Q ss_pred HHHHHHhccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 013174 273 RLFDHVTCNISAYVDGVTVPGALALDLIEQAEVEVERLDQLKASRMKEIAFKRQGELEEIFA 334 (448)
Q Consensus 273 ~~F~~~~~~i~~s~~~~~~~~~ls~~~i~~l~~El~RL~~lK~~~ik~li~~~r~el~elWd 334 (448)
+.+...... +-+....+..-+..=...+.. +.+++...+.++..++.
T Consensus 656 e~~~~~l~~--------------ay~~y~el~~~l~eG~~FY~~-L~~~~~~~~~~~~df~~ 702 (704)
T 2xs1_A 656 EEVLKNLAT--------------AYDNFVELVANLKEGTKFYNE-LTEILVRFQNKCSDIVF 702 (704)
T ss_dssp HHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--------------HHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHh
No 43
>2a3q_A Hypothetical protein; MM.29898, BC004623, 2410015N17RIK, structural genomics, PROT structure initiative, PSI; 2.32A {Mus musculus} SCOP: a.204.1.2 PDB: 2q4p_A
Probab=22.17 E-value=3.6e+02 Score=22.82 Aligned_cols=80 Identities=20% Similarity=0.148 Sum_probs=45.7
Q ss_pred CCCCCCCCCccchHHHHHHHHHHHHHHh--CCChH---HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHH
Q 013174 3 VTDTENPLLGETTCSSLLHKLQEIWDEV--GENDE---ERDKMLLQIEKECLDVYKRKVEQ----------AAKSRAQLL 67 (448)
Q Consensus 3 ~~~~~~~~~~~~~~~~~l~~L~~IWdei--G~~~~---er~~~~~~l~~~~~~~~~~~v~e----------~~~~k~~l~ 67 (448)
++|..+|+.+. +.+|+..-..+ |.+=. .-...+..+..++-+|...+-.. -...++.+.
T Consensus 20 ~~p~~lpalm~------~~eLqk~~~~~~~~~dW~~~~~p~~l~~~L~EEvgEL~eai~~~~~~~~g~~~~~~~~~e~l~ 93 (170)
T 2a3q_A 20 ARPFRFSPEPT------LEDIRRLHAEFAAERDWEQFHQPRNLLLALVGEVGELAELFQWKSDTEPGPQAWPPKERAALQ 93 (170)
T ss_dssp --CCCCCSCSC------HHHHHHHHHHHHHTSCHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSSSCCGGGSCHHHHHHHH
T ss_pred CCCCCCChhhH------HHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHHHHHHHHHHhhccccccccccccccHHHHH
Confidence 44444566554 34455554443 33321 11344556666666555543210 023567899
Q ss_pred HHHHHHHHHHHHHHHHhCCCC
Q 013174 68 QALSDAKIELASLLSALGEKS 88 (448)
Q Consensus 68 ~~I~~~~~el~~L~~eLg~~~ 88 (448)
.++.++.--+..|+..+|+.+
T Consensus 94 eELGDVL~~lv~LA~~lgIDl 114 (170)
T 2a3q_A 94 EELSDVLIYLVALAARCHVDL 114 (170)
T ss_dssp HHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHHHHHhCCCH
Confidence 999999999999999997654
No 44
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=22.08 E-value=3.8e+02 Score=23.09 Aligned_cols=73 Identities=15% Similarity=0.115 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013174 50 DVYKRKVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSD 129 (448)
Q Consensus 50 ~~~~~~v~e~~~~k~~l~~~I~~~~~el~~L~~eLg~~~~~~~~~~~~~~~sL~~~l~~l~~~le~L~~~k~~R~~e~~~ 129 (448)
++....-.+.+..+.++.+.+.+++..+.-...+|....... .+ +.-..|.|..++|+.....++.+|..
T Consensus 88 e~~~~l~~~~e~lr~~l~kdlEelr~kL~P~~eEL~~~l~~~---~E-------elr~~L~Py~eelr~kl~~~~eeLr~ 157 (191)
T 1nfn_A 88 ETRARLSKELQAAQARLGADMEDVCGRLVQYRGEVQAMLGQS---TE-------ELRVRLASHLRKLRKRLLRDADDLQK 157 (191)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC---CH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---HH-------HHHHHhhhhHHHHHHHHHHHHHHHHH
Q ss_pred HHH
Q 013174 130 VQS 132 (448)
Q Consensus 130 l~~ 132 (448)
...
T Consensus 158 ~l~ 160 (191)
T 1nfn_A 158 RLA 160 (191)
T ss_dssp HHH
T ss_pred HhH
No 45
>2oie_A RS21-C6; helix, hydrolase; 2.20A {Mus musculus} SCOP: a.204.1.2 PDB: 2oig_A*
Probab=21.33 E-value=2.8e+02 Score=21.29 Aligned_cols=84 Identities=18% Similarity=0.023 Sum_probs=48.0
Q ss_pred CCCCCCCCccchHHHHHHHHHHHHHHhCCChH-HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH
Q 013174 4 TDTENPLLGETTCSSLLHKLQEIWDEVGENDE-ERDKMLLQIEKECLDVYKRKVE----------QAAKSRAQLLQALSD 72 (448)
Q Consensus 4 ~~~~~~~~~~~~~~~~l~~L~~IWdeiG~~~~-er~~~~~~l~~~~~~~~~~~v~----------e~~~~k~~l~~~I~~ 72 (448)
-|+..|+.+. -..+...+......-|.+.. .-...+..+..++.++...+-. -....++.+..++.+
T Consensus 6 ~~~~~p~~m~--~~~lq~~~~~~~~~~dw~~~~~~~~~~~~L~eE~gEl~e~~~~~~~~~~~~~~~~~~~~~~l~eElgD 83 (111)
T 2oie_A 6 RPFRFSPEPT--LEDIRRLHAEFAAERDWEQFHQPRNLLLALVGEVGELAELFQWKSDTEPGPQAWPPKERAALQEELSD 83 (111)
T ss_dssp CCCCCCSCSC--HHHHHHHHHHHHHTTTCGGGCCHHHHHHHHHHHHHHHHHHHHTCCCCSSCGGGSCHHHHHHHHHHHHH
T ss_pred CCCCCCcccc--HHHHHHHHHHHHHHCCCcccCCHHHHHHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHHHHH
Confidence 3444555443 22333444444333333321 1133455666666665554320 002356789999999
Q ss_pred HHHHHHHHHHHhCCCCc
Q 013174 73 AKIELASLLSALGEKSI 89 (448)
Q Consensus 73 ~~~el~~L~~eLg~~~~ 89 (448)
+.--+..|+..+|+.+.
T Consensus 84 vL~~l~~lA~~lgiDle 100 (111)
T 2oie_A 84 VLIYLVALAARCHVDLP 100 (111)
T ss_dssp HHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHCcCHH
Confidence 99999999999998753
No 46
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=20.97 E-value=2.2e+02 Score=20.49 Aligned_cols=32 Identities=9% Similarity=0.057 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013174 53 KRKVEQAAKSRAQLLQALSDAKIELASLLSAL 84 (448)
Q Consensus 53 ~~~v~e~~~~k~~l~~~I~~~~~el~~L~~eL 84 (448)
...|.+.+..-..+..++..+..++..|..++
T Consensus 35 E~~v~~le~~~~~l~~en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 35 ETQVVTLKELHSSTTLENDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666777777777777776655
No 47
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=20.81 E-value=3.1e+02 Score=21.56 Aligned_cols=67 Identities=19% Similarity=0.303 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHhCCChHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 013174 18 SLLHKLQEIWDEVGENDEERDK---MLLQIEKECLDVYKRKVEQAAKSRAQLLQALSDAKIELASLLSALG 85 (448)
Q Consensus 18 ~~l~~L~~IWdeiG~~~~er~~---~~~~l~~~~~~~~~~~v~e~~~~k~~l~~~I~~~~~el~~L~~eLg 85 (448)
.+|..-+.-.+++......+.. .+.-|.+. .++|..=|.-++..|.++..++..+..++..|...+.
T Consensus 38 eaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQ-v~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~ 107 (110)
T 2v4h_A 38 EALVAKQELIDKLKEEAEQHKIVMETVPVLKAQ-ADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFN 107 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3455555555555544433333 23233323 6688888888899999999999999999988877654
No 48
>1yf2_A Type I restriction-modification enzyme, S subunit; structura genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii} SCOP: d.287.1.2 d.287.1.2
Probab=20.80 E-value=1.2e+02 Score=29.08 Aligned_cols=41 Identities=20% Similarity=0.263 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 013174 269 SEERRLFDHVTCNISAYVDGVTVPGALALDLIEQAEVEVERLDQLKASRMKEIAF 323 (448)
Q Consensus 269 ~ee~~~F~~~~~~i~~s~~~~~~~~~ls~~~i~~l~~El~RL~~lK~~~ik~li~ 323 (448)
.+||+.|......+ +..|+.++.+++.|+++|+..|++++.
T Consensus 378 l~eQ~~I~~~l~~l--------------d~~i~~~~~~~~~l~~~k~~Ll~~l~~ 418 (425)
T 1yf2_A 378 LEEQKQIAKILSSV--------------DKSIELKKQKKEKLQRMKKKIMELLLT 418 (425)
T ss_dssp HHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 47888888766431 568899999999999999999988763
No 49
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=20.19 E-value=1.6e+02 Score=17.87 Aligned_cols=24 Identities=13% Similarity=0.101 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Q 013174 62 SRAQLLQALSDAKIELASLLSALG 85 (448)
Q Consensus 62 ~k~~l~~~I~~~~~el~~L~~eLg 85 (448)
...++......++.++..|..-||
T Consensus 8 KvEeLl~~~~~Le~EV~RLk~lL~ 31 (33)
T 3c3g_A 8 KLXEIXSKXYHXENXLARIKXLLX 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHc
Confidence 334455556666666666666655
Done!