Query 013174
Match_columns 448
No_of_seqs 176 out of 486
Neff 8.1
Searched_HMMs 13730
Date Mon Mar 25 05:35:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013174.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013174hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1seta1 a.2.7.1 (A:1-110) Sery 68.3 18 0.0013 26.6 9.5 78 55-146 29-106 (110)
2 d1vcsa1 a.47.2.1 (A:8-96) Vesi 40.7 18 0.0013 25.7 4.7 54 63-119 29-82 (89)
3 d1gm5a1 a.24.21.1 (A:7-105) Re 40.4 0.9 6.5E-05 33.2 -2.7 22 422-443 70-91 (99)
4 d1yf2a2 d.287.1.2 (A:221-425) 38.0 21 0.0016 28.1 5.5 41 269-323 158-198 (205)
5 d1ydxa2 d.287.1.2 (A:194-374) 33.0 28 0.002 27.2 5.4 40 269-322 138-177 (181)
6 d1ydxa1 d.287.1.2 (A:1-193) Bi 31.6 31 0.0022 27.1 5.5 41 269-323 143-183 (193)
7 d1yf2a1 d.287.1.2 (A:1-220) Bi 27.9 51 0.0037 26.4 6.4 42 268-323 167-208 (220)
8 d1f46a_ d.129.4.1 (A:) Cell-di 26.5 58 0.0042 24.8 6.0 45 126-176 92-136 (139)
9 d1u5ta1 a.4.5.54 (A:20-164) Va 26.4 13 0.00098 29.1 1.9 45 102-146 13-57 (145)
10 d1zkea1 a.30.6.1 (A:1-79) Hypo 21.9 1.1E+02 0.0079 20.5 6.2 59 320-380 10-68 (79)
No 1
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=68.26 E-value=18 Score=26.57 Aligned_cols=78 Identities=6% Similarity=0.076 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013174 55 KVEQAAKSRAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQKEERVKEFSDVQSQI 134 (448)
Q Consensus 55 ~v~e~~~~k~~l~~~I~~~~~el~~L~~eLg~~~~~~~~~~~~~~~sL~~~l~~l~~~le~L~~~k~~R~~e~~~l~~~i 134 (448)
.|-+....+..+..++..++++-+.+..++|-.... ....+......+..++..+.. ++..+..++
T Consensus 29 ~i~~ld~~rr~l~~~~e~l~~~rN~~sk~i~k~~~~-------~~~~l~~~~k~lk~~i~~le~-------~~~~~~~~l 94 (110)
T d1seta1 29 ALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPE-------EKEALIARGKALGEEAKRLEE-------ALREKEARL 94 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCHH-------HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-------chHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Confidence 444566678889999999999999999999842211 112344555555555555544 477788888
Q ss_pred HHHHhHhcCCCC
Q 013174 135 QKICGEIAGNLS 146 (448)
Q Consensus 135 ~~l~~~L~~~~~ 146 (448)
..++..++-.|+
T Consensus 95 ~~~ll~iPNi~~ 106 (110)
T d1seta1 95 EALLLQVPLPPW 106 (110)
T ss_dssp HHHHTTCCCCCC
T ss_pred HHHHHcCCCCCC
Confidence 887766655554
No 2
>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=40.71 E-value=18 Score=25.71 Aligned_cols=54 Identities=13% Similarity=0.211 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCCCCCcHHHHHHHHHHHHHHHHHH
Q 013174 63 RAQLLQALSDAKIELASLLSALGEKSIAGLGIPEKTSGTIKEQLAAIAPALEQLWKQ 119 (448)
Q Consensus 63 k~~l~~~I~~~~~el~~L~~eLg~~~~~~~~~~~~~~~sL~~~l~~l~~~le~L~~~ 119 (448)
+.....+|.....+...|.+.++...-.. |+....++..++..|+..+..|+++
T Consensus 29 rk~~l~~ie~~leEA~ell~qMelEvr~~---p~s~R~~~~~klr~Yk~dl~~lk~e 82 (89)
T d1vcsa1 29 KKQMVANVEKQLEEARELLEQMDLEVREI---PPQSRGMYSNRMRSYKQEMGKLETD 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTS---CTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555554332211 1122467778889999988888876
No 3
>d1gm5a1 a.24.21.1 (A:7-105) RecG, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=40.43 E-value=0.9 Score=33.23 Aligned_cols=22 Identities=14% Similarity=0.025 Sum_probs=19.4
Q ss_pred HHHHHHhHHhcccCCCcccccC
Q 013174 422 KRAEKARILVNKIPGMPRIPEQ 443 (448)
Q Consensus 422 l~eEk~Rk~i~klP~~~e~L~~ 443 (448)
|.+|++++||++.|+||+.+|.
T Consensus 70 Lp~eR~~kRvk~~~gMIerfR~ 91 (99)
T d1gm5a1 70 LPEARKRYRIQKSLEMIEKLRS 91 (99)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhccHHHHHHHHH
Confidence 6789999999999999998763
No 4
>d1yf2a2 d.287.1.2 (A:221-425) Bipartite methylase S protein MJ0130 {Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=38.04 E-value=21 Score=28.12 Aligned_cols=41 Identities=20% Similarity=0.239 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 013174 269 SEERRLFDHVTCNISAYVDGVTVPGALALDLIEQAEVEVERLDQLKASRMKEIAF 323 (448)
Q Consensus 269 ~ee~~~F~~~~~~i~~s~~~~~~~~~ls~~~i~~l~~El~RL~~lK~~~ik~li~ 323 (448)
.++++.|...... -+..|+.++..++.|+++|+..|+.++.
T Consensus 158 ~~eQ~~I~~~l~~--------------id~~i~~~~~~~~~l~~~k~~Ll~~l~t 198 (205)
T d1yf2a2 158 LEEQKQIAKILSS--------------VDKSIELKKQKKEKLQRMKKKIMELLLT 198 (205)
T ss_dssp HHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4678888776543 1668899999999999999998887763
No 5
>d1ydxa2 d.287.1.2 (A:194-374) Bipartite methylase S protein MG438 {Mycoplasma genitalium [TaxId: 2097]}
Probab=33.04 E-value=28 Score=27.15 Aligned_cols=40 Identities=13% Similarity=0.178 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 013174 269 SEERRLFDHVTCNISAYVDGVTVPGALALDLIEQAEVEVERLDQLKASRMKEIA 322 (448)
Q Consensus 269 ~ee~~~F~~~~~~i~~s~~~~~~~~~ls~~~i~~l~~El~RL~~lK~~~ik~li 322 (448)
.+++..|......+ ++.|+.++.+++.|+++|...|++++
T Consensus 138 l~eQ~~I~~~l~~~--------------d~~i~~~~~~i~~l~~lk~~Ll~~lF 177 (181)
T d1ydxa2 138 FQLQRKAGKIVFLL--------------DQKLDQYKKELSSLTVIRDTLLKKLF 177 (181)
T ss_dssp HHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47888888776432 67899999999999999999888764
No 6
>d1ydxa1 d.287.1.2 (A:1-193) Bipartite methylase S protein MG438 {Mycoplasma genitalium [TaxId: 2097]}
Probab=31.59 E-value=31 Score=27.09 Aligned_cols=41 Identities=10% Similarity=0.054 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 013174 269 SEERRLFDHVTCNISAYVDGVTVPGALALDLIEQAEVEVERLDQLKASRMKEIAF 323 (448)
Q Consensus 269 ~ee~~~F~~~~~~i~~s~~~~~~~~~ls~~~i~~l~~El~RL~~lK~~~ik~li~ 323 (448)
.++++.+...... =+..|+.++.+++.|+++|...|++++.
T Consensus 143 ~~eQ~~I~~~l~~--------------ld~~i~~~~~~i~~l~~~~~~ll~~lft 183 (193)
T d1ydxa1 143 KNEQHAIANTLSV--------------FDERLENLASLIEINRKLRDEYAHKLFS 183 (193)
T ss_dssp HHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4678888776542 1678999999999999999999999884
No 7
>d1yf2a1 d.287.1.2 (A:1-220) Bipartite methylase S protein MJ0130 {Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=27.93 E-value=51 Score=26.35 Aligned_cols=42 Identities=21% Similarity=0.346 Sum_probs=33.4
Q ss_pred CHHHHHHHHHHhccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 013174 268 PSEERRLFDHVTCNISAYVDGVTVPGALALDLIEQAEVEVERLDQLKASRMKEIAF 323 (448)
Q Consensus 268 ~~ee~~~F~~~~~~i~~s~~~~~~~~~ls~~~i~~l~~El~RL~~lK~~~ik~li~ 323 (448)
|.++|+.|...... -.+.+...+..++.|+++|...|++++.
T Consensus 167 p~~eQ~~I~~~l~~--------------i~~~i~~~~~~i~~L~~~r~~ll~~l~t 208 (220)
T d1yf2a1 167 PLEEQKQIAKILTK--------------IDEGIEIIEKSINKLERIKKGLMHKLLT 208 (220)
T ss_dssp CHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 35788888776643 2668899999999999999999888875
No 8
>d1f46a_ d.129.4.1 (A:) Cell-division protein ZipA, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=26.46 E-value=58 Score=24.81 Aligned_cols=45 Identities=27% Similarity=0.359 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHhHhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 013174 126 EFSDVQSQIQKICGEIAGNLSLGDQAPSVDESDLTLKKLDEYQAQLQELQK 176 (448)
Q Consensus 126 e~~~l~~~i~~l~~~L~~~~~~~~~~~~~~~~~lS~~~L~~l~~~l~~L~~ 176 (448)
.|..+......+|..|++.-.... ...+|.+.++.++.++.+++.
T Consensus 92 aFd~Ml~~a~~la~~l~g~l~D~~------r~~lt~q~i~~~R~~i~e~e~ 136 (139)
T d1f46a_ 92 LFKLMLQSAQHIADEVGGVVLDDQ------RRMMTPQKLREYQDIIREVKD 136 (139)
T ss_dssp HHHHHHHHHHHHHHHHTCEEECTT------SCBCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCEEECCC------CCCCCHHHHHHHHHHHHHHHH
Confidence 377788888899999998754321 457899999999999988874
No 9
>d1u5ta1 a.4.5.54 (A:20-164) Vacuolar sorting protein SNF8 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=26.44 E-value=13 Score=29.07 Aligned_cols=45 Identities=16% Similarity=0.334 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCC
Q 013174 102 IKEQLAAIAPALEQLWKQKEERVKEFSDVQSQIQKICGEIAGNLS 146 (448)
Q Consensus 102 L~~~l~~l~~~le~L~~~k~~R~~e~~~l~~~i~~l~~~L~~~~~ 146 (448)
|..|+..++..|+++-.....=.+.=-..+.+..++|+.+|.+|.
T Consensus 13 l~~QL~vF~~~L~~FA~kH~~eI~~np~FR~~F~~MC~~iGVDPL 57 (145)
T d1u5ta1 13 LRDQLMVFQERLVEFAKKHNSELQASPEFRSKFMHMCSSIGIDPL 57 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTTTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHHhCCChh
Confidence 444555555555555555444445555678889999999999985
No 10
>d1zkea1 a.30.6.1 (A:1-79) Hypothetical protein HP1531 {Helicobacter pylori [TaxId: 210]}
Probab=21.92 E-value=1.1e+02 Score=20.47 Aligned_cols=59 Identities=12% Similarity=0.157 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhcCCCCChHHHHHHHHHHHHHHHHHHHh
Q 013174 320 EIAFKRQGELEEIFARAHIEIDPVAAREKIMTLIDSGNVEPAELLADMDNQIAKAKEEAHS 380 (448)
Q Consensus 320 ~li~~~r~el~elWd~~~~~~e~~~~~~~~~~~~~s~~~~~e~lL~~~E~ei~~lk~~~~~ 380 (448)
+=|+..|.+|+=+-+...+|-..--... ....+--.-.+...|.+++.||.+||+...+
T Consensus 10 ~~IE~~q~eI~~lL~~AkiS~vDyImIK--RGS~DmPe~l~~~~l~qid~ev~kLK~~Ida 68 (79)
T d1zkea1 10 ADIEDSQNEIEMLLKLANLSLGDFIEIK--RGSMDMPKGVNEAFFTQLSEEVERLKELINA 68 (79)
T ss_dssp HHHHHHHHHHHHHHHHHTCCHHHHHHHH--TTSSCCCTTCCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHhheee--cCcccCccccCHHHHHHHHHHHHHHHHHHHH
Confidence 3457789999999999888832100000 0111111125778899999999999887654
Done!