BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 013175
         (448 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3IGH|X Chain X, Crystal Structure Of An Uncharacterized Metal-Dependent
           Hydrolase From Pyrococcus Horikoshii Ot3
          Length = 486

 Score =  100 bits (250), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 103/380 (27%), Positives = 170/380 (44%), Gaps = 41/380 (10%)

Query: 46  NPVWLSRMDGHMGLANSVALQLVGITNLSE-DPNGGTIMKTSSGEPTGLLIDAAMKLILP 104
            PV++ R   H+ +AN   L+L+ +T   + D + G I + S        ++ A K+I  
Sbjct: 127 KPVFIYRKCFHVAVANDKMLELLNLTPSKDFDEDTGIIKEKS--------LEEARKVINE 178

Query: 105 WIPEVSVDXXXXXXXXXXXXXXXXGVTTVVDFGRYYPGESVQLSWEDFADVYQWASYSEK 164
            +  ++V+                GV +V          S     E       +     K
Sbjct: 179 RV--LTVEDYVYYIKRAQEHLLDLGVKSV----------SFMSVNEKALRALFYLEREGK 226

Query: 165 MKIRVCLFFPLETWSSLADLINKTGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYADEP 224
           + I V  +   E    L  +    G    + + + GVK F DGSLG+ +AL  +PY+D+P
Sbjct: 227 LSINVFAYVTPEVLDKLESI--GLGRFQGNRLTIAGVKLFTDGSLGARTALLSKPYSDDP 284

Query: 225 HNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQRF-- 282
              G  VME E L+ +T  +   GL VAIHAIGD+A D+ LD+++    TTG     F  
Sbjct: 285 STSGQLVMEREELIRITEKARSLGLDVAIHAIGDKALDVALDVFE----TTG-----FPG 335

Query: 283 RIEHAQHLASGTAARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSXXXXX 342
           RIEHA  +      R  +  +  S+QP  ++ D     +++G +R  +  Y F+      
Sbjct: 336 RIEHASLVRDDQLERVKNLKVRLSVQPHFIISDW-WIVERVGEERV-KWVYRFKD-LMKV 392

Query: 343 XXXXXGSDWPVADINPLCAIRTAMKRIPPGWDNAW--IPSERISLTDALIAHTLSAARAC 400
                 +D P+   +P   +  A+ R   G    +     + + + DAL ++T  +AR  
Sbjct: 393 AELGFSTDSPIEPADPWLTVDAAVNR-GKGKVKLYELTKDQALDIKDALHSYTYGSARVS 451

Query: 401 FLENDVGSLSPGKIADFVIL 420
            L +D+G L PG  A+++IL
Sbjct: 452 -LASDIGKLEPGFKAEYIIL 470


>pdb|3ICJ|A Chain A, Crystal Structure Of An Uncharacterized Metal-Dependent
           Hydrolase From Pyrococcus Furiosus
          Length = 534

 Score = 88.2 bits (217), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 121/259 (46%), Gaps = 23/259 (8%)

Query: 164 KMKIRVCLFFPLETWSSLADL-INK-TGHVLSDWVYLGGVKAFADGSLGSNSALFHEPYA 221
           ++K+ V  +   E    L +L + K  G  L  W    GV  F DGSLG+ +AL  EPY 
Sbjct: 260 RLKMNVFAYLSPELLDKLEELNLGKFEGRRLRIW----GVXLFVDGSLGARTALLSEPYT 315

Query: 222 DEPHNYGLQVMELESLLSMTMASDKSGLQVAIHAIGDRANDLVLDMYKSVVVTTGKRDQR 281
           D P   G  VM  + ++ +   +   GL VA+HAIGD+A D+ LD ++    +       
Sbjct: 316 DNPTTSGELVMNKDEIVEVIERAKPLGLDVAVHAIGDKAVDVALDAFEEAEFSG------ 369

Query: 282 FRIEHAQHLASGTAARFGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSXXXX 341
            RIEHA  +      R  +  +  S QP  ++ D      ++G +RA + +Y  ++    
Sbjct: 370 -RIEHASLVRDDQLERIKELKVRISAQPHFIVSDWWIV-NRVGEERA-KWAYRLKT-LSS 425

Query: 342 XXXXXXGSDWPVADINPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACF 401
                  +D P+   +P  +I  A+ R          P ER+S  +AL  +T  +A+   
Sbjct: 426 ITKLGFSTDSPIEPADPWVSIDAAVNRYVVD------PGERVSREEALHLYTHGSAQVTL 479

Query: 402 LENDVGSLSPGKIADFVIL 420
            E D+G L  G  A+++IL
Sbjct: 480 AE-DLGKLERGFRAEYIIL 497


>pdb|3OOQ|A Chain A, Crystal Structure Of Amidohydrolase From Thermotoga
           Maritima Msb8
 pdb|3OOQ|B Chain B, Crystal Structure Of Amidohydrolase From Thermotoga
           Maritima Msb8
 pdb|3OOQ|C Chain C, Crystal Structure Of Amidohydrolase From Thermotoga
           Maritima Msb8
 pdb|3OOQ|D Chain D, Crystal Structure Of Amidohydrolase From Thermotoga
           Maritima Msb8
 pdb|3OOQ|E Chain E, Crystal Structure Of Amidohydrolase From Thermotoga
           Maritima Msb8
 pdb|3OOQ|F Chain F, Crystal Structure Of Amidohydrolase From Thermotoga
           Maritima Msb8
 pdb|3OOQ|G Chain G, Crystal Structure Of Amidohydrolase From Thermotoga
           Maritima Msb8
 pdb|3OOQ|H Chain H, Crystal Structure Of Amidohydrolase From Thermotoga
           Maritima Msb8
 pdb|3OOQ|I Chain I, Crystal Structure Of Amidohydrolase From Thermotoga
           Maritima Msb8
 pdb|3OOQ|J Chain J, Crystal Structure Of Amidohydrolase From Thermotoga
           Maritima Msb8
          Length = 396

 Score = 36.6 bits (83), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 5/61 (8%)

Query: 387 DALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVSASIEATYVSGVQA 446
           D L   T++ A+   LE+ +GS+ PGK AD V+     W     +  + +E  Y+ GV+ 
Sbjct: 331 DLLKILTVNPAKILGLEDRIGSIEPGKDADLVV-----WSGHPFDXKSVVERVYIDGVEV 385

Query: 447 Y 447
           +
Sbjct: 386 F 386


>pdb|2GOK|A Chain A, Crystal Structure Of The Imidazolonepropionase From
           Agrobacterium Tumefaciens At 1.87 A Resolution
 pdb|2GOK|B Chain B, Crystal Structure Of The Imidazolonepropionase From
           Agrobacterium Tumefaciens At 1.87 A Resolution
          Length = 429

 Score = 31.6 bits (70), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 16/38 (42%), Positives = 24/38 (63%)

Query: 382 RISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVI 419
           R+++ + L A T +AA+A  L  + G+L  GK ADF I
Sbjct: 354 RMTVEECLTATTRNAAKALGLLAETGTLEAGKSADFAI 391


>pdb|2PUZ|A Chain A, Crystal Structure Of Imidazolonepropionase From
           Agrobacterium Tumefaciens With Bound Product
           N-Formimino-L-Glutamate
 pdb|2PUZ|B Chain B, Crystal Structure Of Imidazolonepropionase From
           Agrobacterium Tumefaciens With Bound Product
           N-Formimino-L-Glutamate
          Length = 419

 Score = 31.6 bits (70), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 16/38 (42%), Positives = 24/38 (63%)

Query: 382 RISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVI 419
           R+++ + L A T +AA+A  L  + G+L  GK ADF I
Sbjct: 352 RMTVEECLTATTRNAAKALGLLAETGTLEAGKSADFAI 389


>pdb|1CII|A Chain A, Colicin Ia
          Length = 602

 Score = 31.2 bits (69), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 1/76 (1%)

Query: 262 DLVLDMYKSVVVTTGKRDQRFRIEHAQHLASGTAARFGDQGIVASMQPQHLLDDADSARK 321
           D  +  YK+ +    K ++  R E  + L++  AAR  D+  + +++  +  D AD  R+
Sbjct: 52  DKEITAYKNTLSAQQKENENKRTEAGKRLSAAIAAREKDENTLKTLRAGN-ADAADITRQ 110

Query: 322 KLGVDRAERESYLFQS 337
           +  + +AE   Y F++
Sbjct: 111 EFRLLQAELREYGFRT 126


>pdb|4DYK|A Chain A, Crystal Structure Of An Adenosine Deaminase From
           Pseudomonas Aeruginosa Pao1 (Target Nysgrc-200449) With
           Bound Zn
 pdb|4DYK|B Chain B, Crystal Structure Of An Adenosine Deaminase From
           Pseudomonas Aeruginosa Pao1 (Target Nysgrc-200449) With
           Bound Zn
          Length = 451

 Score = 30.8 bits (68), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 20/36 (55%)

Query: 388 ALIAHTLSAARACFLENDVGSLSPGKIADFVILSTS 423
           AL   TL+ ARA  LE  +GSL  GK AD V    S
Sbjct: 345 ALRMATLNGARALGLERLIGSLEAGKAADLVAFDLS 380


>pdb|3AV4|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1
 pdb|3AV5|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1 With
            Adohcy
 pdb|3AV6|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1 With
            Adomet
          Length = 1330

 Score = 30.0 bits (66), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 4/47 (8%)

Query: 350  DWPVADINPLCAIRTAMKRIP--PGWDNAWIPSERISLTDALIAHTL 394
            D    D++PL A R  M+ IP  PG D   +P+ ++ L D +IAH L
Sbjct: 1124 DHICKDMSPLVAAR--MRHIPLFPGSDWRDLPNIQVRLGDGVIAHKL 1168


>pdb|2OOD|A Chain A, Crystal Structure Of Guanine Deaminase From Bradyrhizobium
           Japonicum
          Length = 475

 Score = 30.0 bits (66), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 393 TLSAARACFLENDVGSLSPGKIADFVIL 420
           TL  A   ++++ +G+  PGK ADFV L
Sbjct: 382 TLGGAEGLYIDDKLGNFEPGKEADFVAL 409


>pdb|3LNP|A Chain A, Crystal Structure Of Amidohydrolase Family Protein
           Olei01672_1_465 From Oleispira Antarctica
          Length = 468

 Score = 30.0 bits (66), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 2/64 (3%)

Query: 383 ISLTDALIAHTLSAARACFLENDVGSLSPGKIADF--VILSTSSWEDFAAEVSASIEATY 440
           I   +AL   TL  ARA  +++  GSL PGK AD   + L+T S +     VS  +  T 
Sbjct: 365 IPAIEALTXATLGGARALGIDDITGSLKPGKAADIQAIDLNTLSSQPVFDPVSHXVYCTK 424

Query: 441 VSGV 444
            + V
Sbjct: 425 STQV 428


>pdb|3PT9|A Chain A, Crystal Structure Of Mouse Dnmt1(731-1602) In The Free
           State
 pdb|4DA4|A Chain A, Structure Of Mouse Dnmt1 (731-1602) Bound To
           Hemimethylated Cpg Dna
 pdb|4DA4|B Chain B, Structure Of Mouse Dnmt1 (731-1602) Bound To
           Hemimethylated Cpg Dna
          Length = 873

 Score = 30.0 bits (66), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 4/47 (8%)

Query: 350 DWPVADINPLCAIRTAMKRIP--PGWDNAWIPSERISLTDALIAHTL 394
           D    D++PL A R  M+ IP  PG D   +P+ ++ L D +IAH L
Sbjct: 685 DHICKDMSPLVAAR--MRHIPLFPGSDWRDLPNIQVRLGDGVIAHKL 729


>pdb|3PT6|A Chain A, Crystal Structure Of Mouse Dnmt1(650-1602) In Complex With
           Dna
 pdb|3PT6|B Chain B, Crystal Structure Of Mouse Dnmt1(650-1602) In Complex With
           Dna
          Length = 954

 Score = 30.0 bits (66), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 4/47 (8%)

Query: 350 DWPVADINPLCAIRTAMKRIP--PGWDNAWIPSERISLTDALIAHTL 394
           D    D++PL A R  M+ IP  PG D   +P+ ++ L D +IAH L
Sbjct: 766 DHICKDMSPLVAAR--MRHIPLFPGSDWRDLPNIQVRLGDGVIAHKL 810


>pdb|3FEQ|A Chain A, Crystal Structure Of Uncharacterized Protein Eah89906
 pdb|3FEQ|B Chain B, Crystal Structure Of Uncharacterized Protein Eah89906
 pdb|3FEQ|C Chain C, Crystal Structure Of Uncharacterized Protein Eah89906
 pdb|3FEQ|D Chain D, Crystal Structure Of Uncharacterized Protein Eah89906
 pdb|3FEQ|E Chain E, Crystal Structure Of Uncharacterized Protein Eah89906
 pdb|3FEQ|F Chain F, Crystal Structure Of Uncharacterized Protein Eah89906
 pdb|3FEQ|G Chain G, Crystal Structure Of Uncharacterized Protein Eah89906
 pdb|3FEQ|H Chain H, Crystal Structure Of Uncharacterized Protein Eah89906
 pdb|3FEQ|I Chain I, Crystal Structure Of Uncharacterized Protein Eah89906
 pdb|3FEQ|J Chain J, Crystal Structure Of Uncharacterized Protein Eah89906
 pdb|3FEQ|K Chain K, Crystal Structure Of Uncharacterized Protein Eah89906
 pdb|3FEQ|L Chain L, Crystal Structure Of Uncharacterized Protein Eah89906
 pdb|3FEQ|M Chain M, Crystal Structure Of Uncharacterized Protein Eah89906
 pdb|3FEQ|N Chain N, Crystal Structure Of Uncharacterized Protein Eah89906
 pdb|3FEQ|O Chain O, Crystal Structure Of Uncharacterized Protein Eah89906
 pdb|3FEQ|P Chain P, Crystal Structure Of Uncharacterized Protein Eah89906
          Length = 423

 Score = 29.6 bits (65), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 18/64 (28%), Positives = 29/64 (45%)

Query: 378 IPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVSASIE 437
           I +E +   +AL + T  AA    ++  +G ++ G IAD V+L  +  ED          
Sbjct: 338 IRAEVLGNLEALRSATTVAAEIVNMQGQLGVIAVGAIADLVVLDGNPLEDIGVVADEGAR 397

Query: 438 ATYV 441
             YV
Sbjct: 398 VEYV 401


>pdb|3N2C|A Chain A, Crystal Structure Of Prolidase Eah89906 Complexed With N-
           Methylphosphonate-L-Proline
 pdb|3N2C|B Chain B, Crystal Structure Of Prolidase Eah89906 Complexed With N-
           Methylphosphonate-L-Proline
 pdb|3N2C|C Chain C, Crystal Structure Of Prolidase Eah89906 Complexed With N-
           Methylphosphonate-L-Proline
 pdb|3N2C|D Chain D, Crystal Structure Of Prolidase Eah89906 Complexed With N-
           Methylphosphonate-L-Proline
 pdb|3N2C|E Chain E, Crystal Structure Of Prolidase Eah89906 Complexed With N-
           Methylphosphonate-L-Proline
 pdb|3N2C|F Chain F, Crystal Structure Of Prolidase Eah89906 Complexed With N-
           Methylphosphonate-L-Proline
 pdb|3N2C|G Chain G, Crystal Structure Of Prolidase Eah89906 Complexed With N-
           Methylphosphonate-L-Proline
 pdb|3N2C|H Chain H, Crystal Structure Of Prolidase Eah89906 Complexed With N-
           Methylphosphonate-L-Proline
 pdb|3N2C|I Chain I, Crystal Structure Of Prolidase Eah89906 Complexed With N-
           Methylphosphonate-L-Proline
 pdb|3N2C|J Chain J, Crystal Structure Of Prolidase Eah89906 Complexed With N-
           Methylphosphonate-L-Proline
 pdb|3N2C|K Chain K, Crystal Structure Of Prolidase Eah89906 Complexed With N-
           Methylphosphonate-L-Proline
 pdb|3N2C|L Chain L, Crystal Structure Of Prolidase Eah89906 Complexed With N-
           Methylphosphonate-L-Proline
 pdb|3N2C|M Chain M, Crystal Structure Of Prolidase Eah89906 Complexed With N-
           Methylphosphonate-L-Proline
 pdb|3N2C|N Chain N, Crystal Structure Of Prolidase Eah89906 Complexed With N-
           Methylphosphonate-L-Proline
 pdb|3N2C|O Chain O, Crystal Structure Of Prolidase Eah89906 Complexed With N-
           Methylphosphonate-L-Proline
 pdb|3N2C|P Chain P, Crystal Structure Of Prolidase Eah89906 Complexed With N-
           Methylphosphonate-L-Proline
          Length = 423

 Score = 29.6 bits (65), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 18/64 (28%), Positives = 29/64 (45%)

Query: 378 IPSERISLTDALIAHTLSAARACFLENDVGSLSPGKIADFVILSTSSWEDFAAEVSASIE 437
           I +E +   +AL + T  AA    ++  +G ++ G IAD V+L  +  ED          
Sbjct: 338 IRAEVLGNLEALRSATTVAAEIVNMQGQLGVIAVGAIADLVVLDGNPLEDIGVVADEGAR 397

Query: 438 ATYV 441
             YV
Sbjct: 398 VEYV 401


>pdb|3AH3|A Chain A, Crystal Structure Of Lr5-1, 3-Isopropylmalate
           Dehydrogenase Created By Directed Evolution
 pdb|3AH3|B Chain B, Crystal Structure Of Lr5-1, 3-Isopropylmalate
           Dehydrogenase Created By Directed Evolution
 pdb|3AH3|C Chain C, Crystal Structure Of Lr5-1, 3-Isopropylmalate
           Dehydrogenase Created By Directed Evolution
 pdb|3AH3|D Chain D, Crystal Structure Of Lr5-1, 3-Isopropylmalate
           Dehydrogenase Created By Directed Evolution
          Length = 334

 Score = 28.9 bits (63), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 4/84 (4%)

Query: 186 NKTGHVLSDWV--YLGGVKAFADGSLGSNSALFHEPYADEPHNYGLQVME-LESLLSMTM 242
           N  G +LSD     +GG+     G++G  +A+F   +   P   G  +     ++LS  M
Sbjct: 224 NLLGDILSDLAAGLMGGLGLAPSGNIGDTTAVFEPVHGSAPDIAGKGIANPTAAILSAAM 283

Query: 243 ASDKSGLQVAIHAIGDRANDLVLD 266
             D  G + A   + ++A DLVL+
Sbjct: 284 MLDYLGEKEAAKRV-EKAVDLVLE 306


>pdb|2WL6|A Chain A, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
           Mutant.
 pdb|2WL6|B Chain B, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
           Mutant.
 pdb|2WL6|C Chain C, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
           Mutant.
 pdb|2WL6|D Chain D, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
           Mutant
          Length = 392

 Score = 28.9 bits (63), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 48/126 (38%), Gaps = 15/126 (11%)

Query: 284 IEHAQHLASGTAAR--FGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSXXXX 341
           I H   L S    R  F  +G V +     L D A +A   L +  AE      Q     
Sbjct: 219 IRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAA---LLMSEAEASRRGIQPLGRI 275

Query: 342 XXXXXXGSDWPVADINPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACF 401
                 G D  V    P+ A R A++R   GW        +I   D + AH   AA+AC 
Sbjct: 276 VSWATVGVDPKVMGTGPIPASRKALER--AGW--------KIGDLDLVEAHEAFAAQACA 325

Query: 402 LENDVG 407
           +  D+G
Sbjct: 326 VNKDLG 331


>pdb|2WKU|A Chain A, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant.
 pdb|2WKU|B Chain B, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant.
 pdb|2WKU|C Chain C, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant.
 pdb|2WKU|D Chain D, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant
          Length = 392

 Score = 28.9 bits (63), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 48/126 (38%), Gaps = 15/126 (11%)

Query: 284 IEHAQHLASGTAAR--FGDQGIVASMQPQHLLDDADSARKKLGVDRAERESYLFQSXXXX 341
           I H   L S    R  F  +G V +     L D A +A   L +  AE      Q     
Sbjct: 219 IRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAA---LLMSEAEASRRGIQPLGRI 275

Query: 342 XXXXXXGSDWPVADINPLCAIRTAMKRIPPGWDNAWIPSERISLTDALIAHTLSAARACF 401
                 G D  V    P+ A R A++R   GW        +I   D + AH   AA+AC 
Sbjct: 276 VSWATVGVDPKVMGTGPIPASRKALER--AGW--------KIGDLDLVEAHEAFAAQACA 325

Query: 402 LENDVG 407
           +  D+G
Sbjct: 326 VNKDLG 331


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.132    0.402 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,468,904
Number of Sequences: 62578
Number of extensions: 463084
Number of successful extensions: 1057
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1038
Number of HSP's gapped (non-prelim): 23
length of query: 448
length of database: 14,973,337
effective HSP length: 102
effective length of query: 346
effective length of database: 8,590,381
effective search space: 2972271826
effective search space used: 2972271826
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)