Query 013176
Match_columns 448
No_of_seqs 220 out of 2398
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 01:10:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013176.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013176hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0331 ATP-dependent RNA heli 100.0 1.9E-71 4E-76 518.4 38.9 409 6-414 40-483 (519)
2 PTZ00110 helicase; Provisional 100.0 3.6E-69 7.8E-74 530.8 51.1 410 1-410 103-515 (545)
3 KOG0339 ATP-dependent RNA heli 100.0 5.2E-67 1.1E-71 472.2 36.9 404 3-407 199-603 (731)
4 PRK10590 ATP-dependent RNA hel 100.0 7.7E-65 1.7E-69 493.5 45.1 365 28-394 2-367 (456)
5 PLN00206 DEAD-box ATP-dependen 100.0 5.8E-64 1.3E-68 492.8 46.0 404 1-406 95-502 (518)
6 KOG0330 ATP-dependent RNA heli 100.0 1.9E-64 4.2E-69 442.3 30.6 366 24-396 58-424 (476)
7 KOG0336 ATP-dependent RNA heli 100.0 3.6E-64 7.7E-69 442.9 32.0 411 1-412 186-605 (629)
8 KOG0333 U5 snRNP-like RNA heli 100.0 4.9E-64 1.1E-68 455.0 33.3 401 1-403 219-649 (673)
9 PRK04537 ATP-dependent RNA hel 100.0 7.3E-62 1.6E-66 480.4 44.7 368 23-392 5-377 (572)
10 PRK04837 ATP-dependent RNA hel 100.0 4.4E-60 9.5E-65 457.5 45.4 370 23-394 4-377 (423)
11 COG0513 SrmB Superfamily II DN 100.0 2.1E-60 4.6E-65 464.0 42.1 364 27-394 29-396 (513)
12 KOG0335 ATP-dependent RNA heli 100.0 3.2E-61 7E-66 441.9 32.1 393 14-407 61-472 (482)
13 KOG0328 Predicted ATP-dependen 100.0 3.7E-61 8E-66 404.3 29.5 386 11-402 11-396 (400)
14 PRK11776 ATP-dependent RNA hel 100.0 2.9E-59 6.3E-64 456.6 42.5 358 27-392 4-362 (460)
15 KOG0334 RNA helicase [RNA proc 100.0 1.9E-60 4E-65 466.6 33.6 406 1-407 338-748 (997)
16 KOG0341 DEAD-box protein abstr 100.0 1.1E-61 2.4E-66 424.4 22.0 428 1-431 144-582 (610)
17 PRK11192 ATP-dependent RNA hel 100.0 3.5E-58 7.5E-63 446.5 43.6 365 27-394 1-367 (434)
18 PRK11634 ATP-dependent RNA hel 100.0 1.5E-58 3.2E-63 459.1 41.7 355 26-387 5-360 (629)
19 PRK01297 ATP-dependent RNA hel 100.0 1.7E-56 3.8E-61 438.1 43.7 369 24-394 84-457 (475)
20 KOG0338 ATP-dependent RNA heli 100.0 2.2E-58 4.8E-63 416.8 26.9 362 27-391 181-545 (691)
21 PTZ00424 helicase 45; Provisio 100.0 3E-56 6.4E-61 430.3 41.2 362 26-394 27-389 (401)
22 KOG0340 ATP-dependent RNA heli 100.0 3.5E-57 7.6E-62 392.1 28.4 365 24-393 4-375 (442)
23 KOG0342 ATP-dependent RNA heli 100.0 6E-57 1.3E-61 406.8 30.6 363 24-387 79-445 (543)
24 KOG0326 ATP-dependent RNA heli 100.0 1.9E-58 4.1E-63 394.4 18.9 369 27-403 85-453 (459)
25 KOG0345 ATP-dependent RNA heli 100.0 4.2E-56 9.2E-61 398.7 34.5 357 27-384 4-369 (567)
26 KOG0346 RNA helicase [RNA proc 100.0 6.9E-56 1.5E-60 394.0 28.4 367 27-393 19-424 (569)
27 KOG0343 RNA Helicase [RNA proc 100.0 6.8E-54 1.5E-58 391.1 30.1 357 24-383 66-426 (758)
28 KOG0332 ATP-dependent RNA heli 100.0 7.4E-54 1.6E-58 373.7 28.1 392 6-406 69-472 (477)
29 KOG0348 ATP-dependent RNA heli 100.0 1.8E-53 3.8E-58 387.1 30.2 373 19-391 128-566 (708)
30 TIGR03817 DECH_helic helicase/ 100.0 3.4E-50 7.5E-55 407.1 38.3 331 33-378 20-385 (742)
31 PLN03137 ATP-dependent DNA hel 100.0 4.2E-50 9.1E-55 403.7 38.0 339 31-388 441-796 (1195)
32 TIGR00614 recQ_fam ATP-depende 100.0 8.3E-50 1.8E-54 389.3 36.6 325 44-389 6-343 (470)
33 KOG0347 RNA helicase [RNA proc 100.0 7.3E-51 1.6E-55 371.2 19.8 354 26-396 180-587 (731)
34 KOG0344 ATP-dependent RNA heli 100.0 1.2E-49 2.6E-54 368.0 28.0 396 11-407 116-523 (593)
35 PRK11057 ATP-dependent DNA hel 100.0 5.7E-48 1.2E-52 385.8 38.3 335 33-388 8-352 (607)
36 KOG0327 Translation initiation 100.0 3.1E-49 6.8E-54 347.6 24.9 361 24-393 23-384 (397)
37 TIGR01389 recQ ATP-dependent D 100.0 1.4E-47 3.1E-52 384.4 36.4 326 41-387 4-339 (591)
38 KOG0337 ATP-dependent RNA heli 100.0 6E-49 1.3E-53 348.0 22.4 361 26-391 20-380 (529)
39 TIGR00580 mfd transcription-re 100.0 2.3E-45 5.1E-50 375.0 40.4 356 38-418 441-814 (926)
40 KOG4284 DEAD box protein [Tran 100.0 3.5E-47 7.5E-52 353.0 23.6 355 19-381 17-381 (980)
41 PRK02362 ski2-like helicase; P 100.0 5E-46 1.1E-50 381.1 34.7 338 28-379 2-397 (737)
42 PRK13767 ATP-dependent helicas 100.0 6.2E-46 1.4E-50 383.5 35.5 343 33-377 17-396 (876)
43 KOG0350 DEAD-box ATP-dependent 100.0 8.8E-47 1.9E-51 341.1 25.3 362 26-392 126-553 (620)
44 COG0514 RecQ Superfamily II DN 100.0 1.9E-45 4E-50 350.6 30.0 330 40-390 7-348 (590)
45 PRK10689 transcription-repair 100.0 3.8E-44 8.2E-49 373.8 41.0 360 36-420 588-965 (1147)
46 PRK00254 ski2-like helicase; P 100.0 1.1E-44 2.4E-49 370.3 36.0 339 28-380 2-389 (720)
47 PRK10917 ATP-dependent DNA hel 100.0 5.5E-44 1.2E-48 360.7 39.4 353 36-413 249-623 (681)
48 COG1201 Lhr Lhr-like helicases 100.0 2.9E-44 6.3E-49 354.7 33.5 341 33-378 7-361 (814)
49 TIGR00643 recG ATP-dependent D 100.0 1.9E-43 4.2E-48 354.7 39.7 354 36-413 223-600 (630)
50 PRK01172 ski2-like helicase; P 100.0 1.6E-43 3.4E-48 360.5 32.4 331 28-379 2-378 (674)
51 TIGR02621 cas3_GSU0051 CRISPR- 100.0 1.3E-42 2.9E-47 344.9 33.4 321 37-376 3-388 (844)
52 COG1111 MPH1 ERCC4-like helica 100.0 4.9E-42 1.1E-46 312.8 32.5 322 48-379 14-481 (542)
53 PHA02558 uvsW UvsW helicase; P 100.0 4.8E-40 1E-44 322.2 34.2 351 4-376 67-449 (501)
54 COG1200 RecG RecG-like helicas 100.0 3.5E-39 7.6E-44 306.7 34.8 354 37-415 251-627 (677)
55 PRK09751 putative ATP-dependen 100.0 1.1E-39 2.4E-44 342.0 34.2 295 69-366 1-371 (1490)
56 KOG0329 ATP-dependent RNA heli 100.0 7.7E-42 1.7E-46 283.8 14.1 333 28-401 43-378 (387)
57 KOG0352 ATP-dependent DNA heli 100.0 2.7E-40 5.9E-45 293.6 21.1 331 37-384 6-367 (641)
58 COG1202 Superfamily II helicas 100.0 1.2E-39 2.5E-44 299.7 24.0 346 18-379 185-553 (830)
59 PRK09401 reverse gyrase; Revie 100.0 3.2E-38 7E-43 330.2 36.9 290 39-351 70-410 (1176)
60 PHA02653 RNA helicase NPH-II; 100.0 5.2E-38 1.1E-42 310.7 33.3 312 51-381 166-516 (675)
61 TIGR01587 cas3_core CRISPR-ass 100.0 5.1E-38 1.1E-42 298.3 28.4 301 66-380 1-337 (358)
62 COG1204 Superfamily II helicas 100.0 3.9E-38 8.4E-43 315.8 28.4 337 28-376 10-405 (766)
63 PRK14701 reverse gyrase; Provi 100.0 9.1E-38 2E-42 333.3 32.6 318 36-375 66-452 (1638)
64 KOG0354 DEAD-box like helicase 100.0 1.7E-37 3.8E-42 299.5 29.1 320 49-379 62-529 (746)
65 COG1197 Mfd Transcription-repa 100.0 7.3E-37 1.6E-41 306.6 34.5 359 37-420 583-959 (1139)
66 PRK12898 secA preprotein trans 100.0 1E-36 2.2E-41 296.7 34.5 321 44-382 99-589 (656)
67 TIGR01970 DEAH_box_HrpB ATP-de 100.0 6.1E-37 1.3E-41 310.3 33.1 306 52-382 5-339 (819)
68 KOG0351 ATP-dependent DNA heli 100.0 1E-37 2.2E-42 314.6 25.9 337 37-390 252-603 (941)
69 PRK13766 Hef nuclease; Provisi 100.0 4.2E-36 9.1E-41 311.8 38.5 322 49-380 15-480 (773)
70 PRK11664 ATP-dependent RNA hel 100.0 1E-36 2.2E-41 309.5 31.7 305 52-381 8-341 (812)
71 TIGR00603 rad25 DNA repair hel 100.0 3.6E-36 7.9E-41 296.2 31.3 320 49-395 255-625 (732)
72 COG1205 Distinct helicase fami 100.0 6E-36 1.3E-40 304.2 32.5 333 35-377 56-420 (851)
73 PRK09200 preprotein translocas 100.0 9.9E-36 2.1E-40 296.0 33.2 322 44-382 74-544 (790)
74 TIGR01054 rgy reverse gyrase. 100.0 1.6E-35 3.4E-40 310.5 35.4 290 37-350 66-408 (1171)
75 TIGR03714 secA2 accessory Sec 100.0 2E-35 4.3E-40 291.0 31.8 319 51-383 70-541 (762)
76 TIGR03158 cas3_cyano CRISPR-as 100.0 2.5E-35 5.4E-40 276.5 30.9 291 53-364 1-357 (357)
77 KOG0353 ATP-dependent DNA heli 100.0 3.4E-36 7.3E-41 264.1 20.8 335 30-379 74-467 (695)
78 TIGR00963 secA preprotein tran 100.0 8E-35 1.7E-39 284.9 32.7 322 44-383 52-521 (745)
79 KOG0952 DNA/RNA helicase MER3/ 100.0 2.4E-34 5.1E-39 281.3 25.6 339 44-389 105-501 (1230)
80 COG1061 SSL2 DNA or RNA helica 100.0 1.6E-33 3.5E-38 270.7 25.6 293 49-366 36-376 (442)
81 PRK04914 ATP-dependent helicas 100.0 1.4E-31 3E-36 272.9 32.5 333 49-393 152-617 (956)
82 KOG0349 Putative DEAD-box RNA 100.0 3.9E-33 8.4E-38 248.6 17.1 275 101-377 287-613 (725)
83 PRK09694 helicase Cas3; Provis 100.0 8.9E-31 1.9E-35 265.5 36.2 310 49-368 286-664 (878)
84 PRK11131 ATP-dependent RNA hel 100.0 9.3E-32 2E-36 277.9 29.5 303 51-382 76-414 (1294)
85 PRK05580 primosome assembly pr 100.0 9.4E-31 2E-35 263.6 35.7 312 49-381 144-551 (679)
86 cd00268 DEADc DEAD-box helicas 100.0 7.7E-31 1.7E-35 228.9 24.7 202 29-233 1-202 (203)
87 COG4098 comFA Superfamily II D 100.0 8.1E-30 1.8E-34 221.4 30.1 311 49-387 97-424 (441)
88 PRK13104 secA preprotein trans 100.0 2.2E-29 4.7E-34 250.3 33.0 322 44-383 78-591 (896)
89 TIGR00595 priA primosomal prot 100.0 1.6E-29 3.4E-34 245.9 30.3 290 68-378 1-380 (505)
90 PRK12904 preprotein translocas 100.0 6.5E-29 1.4E-33 246.7 31.0 322 44-383 77-577 (830)
91 KOG0951 RNA helicase BRR2, DEA 100.0 1.8E-29 3.8E-34 250.4 26.3 348 32-387 294-710 (1674)
92 TIGR01967 DEAH_box_HrpA ATP-de 100.0 3.2E-29 7E-34 260.1 29.3 303 55-382 73-407 (1283)
93 PRK12899 secA preprotein trans 100.0 1.6E-28 3.4E-33 243.7 31.8 149 29-187 64-228 (970)
94 KOG0947 Cytoplasmic exosomal R 100.0 1.2E-29 2.6E-34 245.9 22.9 312 43-377 292-721 (1248)
95 PRK11448 hsdR type I restricti 100.0 2.4E-28 5.1E-33 254.9 31.2 308 49-368 413-802 (1123)
96 PRK12906 secA preprotein trans 100.0 3.2E-28 7E-33 240.8 28.4 321 44-382 76-556 (796)
97 KOG0948 Nuclear exosomal RNA h 100.0 2.6E-29 5.7E-34 237.9 17.8 311 44-379 125-539 (1041)
98 COG4581 Superfamily II RNA hel 100.0 2.9E-28 6.4E-33 244.9 25.5 314 39-375 110-533 (1041)
99 PLN03142 Probable chromatin-re 100.0 4.3E-27 9.3E-32 241.0 29.8 315 49-376 169-594 (1033)
100 COG1203 CRISPR-associated heli 100.0 2.4E-27 5.3E-32 241.2 23.6 324 49-379 195-550 (733)
101 PRK13107 preprotein translocas 100.0 2.4E-26 5.2E-31 228.0 29.7 322 44-383 78-595 (908)
102 PF00270 DEAD: DEAD/DEAH box h 99.9 1.8E-26 3.8E-31 195.5 18.6 165 51-221 1-168 (169)
103 KOG0950 DNA polymerase theta/e 99.9 3.8E-26 8.2E-31 223.1 22.8 340 34-387 207-619 (1008)
104 COG1110 Reverse gyrase [DNA re 99.9 2.1E-24 4.7E-29 212.0 27.6 286 39-350 72-416 (1187)
105 COG1643 HrpA HrpA-like helicas 99.9 3.4E-24 7.5E-29 214.5 24.6 309 51-381 52-389 (845)
106 TIGR01407 dinG_rel DnaQ family 99.9 3.1E-23 6.6E-28 215.7 32.5 348 34-392 231-829 (850)
107 KOG1123 RNA polymerase II tran 99.9 2.7E-25 5.9E-30 202.2 13.5 311 49-385 302-659 (776)
108 COG1198 PriA Primosomal protei 99.9 6.8E-23 1.5E-27 202.2 31.3 313 49-381 198-605 (730)
109 KOG0385 Chromatin remodeling c 99.9 4.3E-23 9.4E-28 196.7 26.4 326 49-387 167-605 (971)
110 TIGR00348 hsdR type I site-spe 99.9 6E-23 1.3E-27 207.1 29.1 300 49-366 238-634 (667)
111 PRK12326 preprotein translocas 99.9 4.1E-22 8.8E-27 193.5 29.9 320 44-382 74-550 (764)
112 COG0556 UvrB Helicase subunit 99.9 8.1E-23 1.8E-27 188.0 23.0 171 205-384 386-562 (663)
113 COG4096 HsdR Type I site-speci 99.9 4.1E-23 8.9E-28 200.0 21.0 295 49-366 165-525 (875)
114 TIGR00631 uvrb excinuclease AB 99.9 2.4E-21 5.1E-26 193.2 31.9 135 254-389 423-563 (655)
115 PRK12900 secA preprotein trans 99.9 3E-22 6.5E-27 199.8 24.7 129 253-383 578-715 (1025)
116 KOG0922 DEAH-box RNA helicase 99.9 4.5E-22 9.8E-27 188.5 23.2 309 51-382 53-393 (674)
117 PRK13103 secA preprotein trans 99.9 1.7E-21 3.7E-26 193.8 26.5 321 44-383 78-595 (913)
118 KOG0387 Transcription-coupled 99.9 1.3E-21 2.8E-26 187.6 23.5 314 49-375 205-652 (923)
119 KOG0949 Predicted helicase, DE 99.9 8.9E-22 1.9E-26 192.0 20.8 161 46-217 509-673 (1330)
120 PRK07246 bifunctional ATP-depe 99.9 3.4E-20 7.4E-25 190.3 32.5 330 45-391 242-797 (820)
121 KOG0923 mRNA splicing factor A 99.9 6.7E-21 1.4E-25 179.1 22.2 307 50-378 266-605 (902)
122 KOG0390 DNA repair protein, SN 99.9 3.3E-20 7.2E-25 182.2 27.5 322 49-377 238-703 (776)
123 PRK12903 secA preprotein trans 99.9 1E-19 2.2E-24 179.4 28.3 321 44-383 74-543 (925)
124 PRK05298 excinuclease ABC subu 99.9 2.1E-19 4.6E-24 180.8 31.4 147 255-402 428-589 (652)
125 KOG0920 ATP-dependent RNA heli 99.9 4.2E-20 9.1E-25 184.6 25.7 316 50-380 174-545 (924)
126 smart00487 DEXDc DEAD-like hel 99.9 2.1E-20 4.7E-25 162.6 21.0 184 45-234 4-189 (201)
127 KOG0392 SNF2 family DNA-depend 99.9 6.4E-20 1.4E-24 182.9 24.7 320 49-376 975-1449(1549)
128 PRK08074 bifunctional ATP-depe 99.9 6E-19 1.3E-23 184.5 33.2 133 259-391 737-907 (928)
129 KOG0384 Chromodomain-helicase 99.9 1.5E-20 3.2E-25 187.9 19.1 318 48-379 369-811 (1373)
130 COG4889 Predicted helicase [Ge 99.9 7.6E-21 1.6E-25 183.6 16.5 346 40-396 152-618 (1518)
131 CHL00122 secA preprotein trans 99.9 4.7E-19 1E-23 175.8 27.8 278 44-339 72-491 (870)
132 TIGR03117 cas_csf4 CRISPR-asso 99.9 3.5E-18 7.6E-23 167.9 33.5 116 271-388 469-626 (636)
133 KOG0924 mRNA splicing factor A 99.8 1.8E-19 4E-24 170.0 21.5 304 51-379 358-697 (1042)
134 KOG0389 SNF2 family DNA-depend 99.8 1.8E-19 3.9E-24 172.8 21.7 317 49-377 399-884 (941)
135 KOG0926 DEAH-box RNA helicase 99.8 1.2E-19 2.6E-24 174.0 19.5 308 55-379 262-704 (1172)
136 KOG1000 Chromatin remodeling p 99.8 7.3E-19 1.6E-23 160.4 21.6 313 47-376 196-598 (689)
137 PRK12902 secA preprotein trans 99.8 7.9E-18 1.7E-22 166.8 29.8 277 45-339 82-506 (939)
138 KOG0953 Mitochondrial RNA heli 99.8 2.5E-19 5.5E-24 165.6 16.1 263 66-376 193-474 (700)
139 KOG4150 Predicted ATP-dependen 99.8 5.9E-19 1.3E-23 163.5 16.6 331 40-377 277-638 (1034)
140 cd00079 HELICc Helicase superf 99.8 2.6E-18 5.7E-23 138.7 14.9 119 257-375 12-131 (131)
141 PRK11747 dinG ATP-dependent DN 99.8 3.2E-16 7E-21 159.1 31.8 128 259-390 520-687 (697)
142 cd00046 DEXDc DEAD-like helica 99.8 3.1E-17 6.6E-22 134.3 16.8 144 65-215 1-144 (144)
143 KOG0925 mRNA splicing factor A 99.8 1.2E-16 2.7E-21 145.7 21.7 326 26-379 24-387 (699)
144 KOG0951 RNA helicase BRR2, DEA 99.8 5.1E-17 1.1E-21 162.9 20.4 311 49-387 1143-1502(1674)
145 PF00271 Helicase_C: Helicase 99.8 3.3E-18 7.2E-23 124.1 8.1 78 290-367 1-78 (78)
146 COG1199 DinG Rad3-related DNA 99.8 2.3E-16 5E-21 161.5 24.7 119 258-379 463-617 (654)
147 PF04851 ResIII: Type III rest 99.7 3.2E-17 6.8E-22 140.7 14.4 152 49-216 3-183 (184)
148 TIGR02562 cas3_yersinia CRISPR 99.7 6.6E-16 1.4E-20 155.7 23.0 309 50-368 409-881 (1110)
149 TIGR00604 rad3 DNA repair heli 99.7 4.8E-15 1E-19 151.9 29.8 121 258-379 506-674 (705)
150 PRK12901 secA preprotein trans 99.7 3.5E-15 7.6E-20 149.8 24.8 129 253-383 608-745 (1112)
151 KOG1002 Nucleotide excision re 99.7 7.8E-15 1.7E-19 134.3 24.2 143 258-402 621-770 (791)
152 KOG4439 RNA polymerase II tran 99.7 1.1E-15 2.4E-20 145.3 19.3 118 258-375 730-852 (901)
153 KOG0386 Chromatin remodeling c 99.7 3E-16 6.4E-21 154.6 13.2 329 49-389 394-846 (1157)
154 PRK14873 primosome assembly pr 99.7 5.2E-14 1.1E-18 140.6 26.1 281 70-379 166-539 (665)
155 KOG0391 SNF2 family DNA-depend 99.6 1.4E-14 3E-19 144.4 19.8 122 258-379 1261-1385(1958)
156 PF02399 Herpes_ori_bp: Origin 99.6 9.7E-14 2.1E-18 136.8 21.9 289 66-378 51-387 (824)
157 smart00490 HELICc helicase sup 99.6 2.4E-15 5.3E-20 110.4 8.4 81 287-367 2-82 (82)
158 KOG0388 SNF2 family DNA-depend 99.6 1.1E-13 2.4E-18 131.9 20.1 121 258-378 1029-1151(1185)
159 COG0610 Type I site-specific r 99.5 3.5E-12 7.7E-17 133.2 24.5 288 65-367 274-637 (962)
160 PF06862 DUF1253: Protein of u 99.5 6E-11 1.3E-15 111.5 27.3 289 99-388 36-424 (442)
161 COG0653 SecA Preprotein transl 99.5 3.5E-12 7.6E-17 126.8 19.8 318 45-380 77-546 (822)
162 COG0553 HepA Superfamily II DN 99.5 5.3E-12 1.1E-16 134.7 22.0 334 48-390 337-831 (866)
163 KOG1015 Transcription regulato 99.5 8.1E-12 1.7E-16 122.8 20.5 120 258-377 1127-1273(1567)
164 PF07652 Flavi_DEAD: Flaviviru 99.4 6.6E-13 1.4E-17 103.8 8.5 136 63-219 3-140 (148)
165 PF00176 SNF2_N: SNF2 family N 99.4 5.4E-12 1.2E-16 117.1 13.8 157 53-216 1-173 (299)
166 smart00488 DEXDc2 DEAD-like he 99.4 9.2E-12 2E-16 113.4 13.7 76 45-123 5-84 (289)
167 smart00489 DEXDc3 DEAD-like he 99.4 9.2E-12 2E-16 113.4 13.7 76 45-123 5-84 (289)
168 KOG2340 Uncharacterized conser 99.2 2.3E-09 5E-14 99.9 17.7 339 49-388 216-677 (698)
169 PF07517 SecA_DEAD: SecA DEAD- 99.1 2.7E-09 5.8E-14 94.5 14.7 131 44-187 73-210 (266)
170 KOG1016 Predicted DNA helicase 99.0 7.9E-09 1.7E-13 100.3 14.8 117 272-388 719-856 (1387)
171 KOG0921 Dosage compensation co 98.9 1E-08 2.2E-13 101.1 11.9 309 54-378 383-773 (1282)
172 PF13872 AAA_34: P-loop contai 98.9 4.7E-08 1E-12 86.8 12.7 170 33-221 27-226 (303)
173 KOG0952 DNA/RNA helicase MER3/ 98.8 3.4E-09 7.3E-14 106.3 4.4 260 49-324 927-1207(1230)
174 KOG1133 Helicase of the DEAD s 98.7 3.4E-05 7.4E-10 75.1 29.1 120 256-378 611-779 (821)
175 PF13086 AAA_11: AAA domain; P 98.7 4E-08 8.7E-13 87.6 8.9 73 49-122 1-75 (236)
176 TIGR00596 rad1 DNA repair prot 98.7 5.2E-07 1.1E-11 92.4 17.4 68 150-217 7-74 (814)
177 PF13307 Helicase_C_2: Helicas 98.7 3.4E-08 7.4E-13 82.5 7.2 106 272-379 9-150 (167)
178 PRK15483 type III restriction- 98.7 5E-07 1.1E-11 92.8 15.7 73 322-394 501-583 (986)
179 PF13604 AAA_30: AAA domain; P 98.7 1.4E-07 2.9E-12 81.1 9.7 123 49-214 1-130 (196)
180 PF02562 PhoH: PhoH-like prote 98.7 1.8E-07 3.9E-12 79.6 10.0 145 49-214 4-155 (205)
181 PF12340 DUF3638: Protein of u 98.6 1.8E-06 3.9E-11 74.1 13.5 129 27-165 3-145 (229)
182 COG3587 Restriction endonuclea 98.6 1.2E-05 2.6E-10 80.0 20.6 74 321-394 482-568 (985)
183 KOG1802 RNA helicase nonsense 98.5 5.1E-07 1.1E-11 86.8 10.4 85 41-136 402-486 (935)
184 TIGR00376 DNA helicase, putati 98.5 4.5E-05 9.8E-10 77.3 22.7 66 49-122 157-223 (637)
185 KOG1132 Helicase of the DEAD s 98.5 1.1E-06 2.5E-11 87.3 10.8 140 45-188 18-261 (945)
186 KOG1001 Helicase-like transcri 98.4 3.7E-06 8.1E-11 84.4 13.6 101 274-374 541-643 (674)
187 TIGR01447 recD exodeoxyribonuc 98.4 6E-06 1.3E-10 82.4 13.4 143 51-214 147-295 (586)
188 PRK10875 recD exonuclease V su 98.3 4.9E-06 1.1E-10 83.2 12.1 142 51-214 154-301 (615)
189 TIGR01448 recD_rel helicase, p 98.3 7.8E-06 1.7E-10 84.1 13.3 130 43-214 318-452 (720)
190 PRK10536 hypothetical protein; 98.3 1.6E-05 3.4E-10 69.8 12.8 143 45-212 55-210 (262)
191 KOG1803 DNA helicase [Replicat 98.2 5.6E-06 1.2E-10 79.4 8.2 65 49-121 185-250 (649)
192 PF09848 DUF2075: Uncharacteri 98.2 6.2E-06 1.3E-10 78.0 8.7 95 66-188 3-97 (352)
193 PF13245 AAA_19: Part of AAA d 98.0 3.3E-05 7.1E-10 54.8 7.7 60 57-120 2-62 (76)
194 TIGR02768 TraA_Ti Ti-type conj 98.0 0.00014 3.1E-09 75.2 15.4 125 45-213 349-475 (744)
195 smart00492 HELICc3 helicase su 98.0 3.7E-05 8.1E-10 61.8 8.6 74 305-378 30-137 (141)
196 PRK13889 conjugal transfer rel 98.0 0.00014 3.1E-09 76.4 14.7 127 44-214 342-470 (988)
197 COG1875 NYN ribonuclease and A 98.0 5E-05 1.1E-09 68.8 9.8 141 44-213 223-386 (436)
198 smart00491 HELICc2 helicase su 98.0 3.4E-05 7.3E-10 62.2 7.8 69 310-378 32-138 (142)
199 PF00580 UvrD-helicase: UvrD/R 97.9 8.9E-05 1.9E-09 69.2 10.1 123 50-184 1-125 (315)
200 PRK06526 transposase; Provisio 97.9 5.2E-05 1.1E-09 67.7 7.7 24 61-84 95-118 (254)
201 PRK13826 Dtr system oriT relax 97.8 0.00041 8.9E-09 73.5 14.8 138 33-214 366-505 (1102)
202 KOG1131 RNA polymerase II tran 97.8 0.00032 7E-09 66.3 12.4 75 45-123 12-90 (755)
203 KOG1805 DNA replication helica 97.8 0.00022 4.8E-09 72.3 11.2 137 32-188 656-810 (1100)
204 PRK08181 transposase; Validate 97.7 0.00022 4.7E-09 64.1 9.9 58 50-116 88-149 (269)
205 COG2805 PilT Tfp pilus assembl 97.7 0.00014 3.1E-09 64.3 8.3 53 20-92 99-152 (353)
206 COG1419 FlhF Flagellar GTP-bin 97.7 0.0031 6.6E-08 58.9 17.0 131 64-226 203-335 (407)
207 PRK04296 thymidine kinase; Pro 97.7 0.00014 3.1E-09 62.1 7.5 110 67-214 5-114 (190)
208 TIGR02760 TraI_TIGR conjugativ 97.6 0.0055 1.2E-07 70.0 20.6 236 49-321 429-685 (1960)
209 PF13401 AAA_22: AAA domain; P 97.6 0.00025 5.4E-09 56.7 7.6 37 176-215 89-125 (131)
210 KOG0298 DEAD box-containing he 97.5 0.0005 1.1E-08 71.7 9.5 154 64-222 374-557 (1394)
211 KOG0989 Replication factor C, 97.5 0.00048 1E-08 61.2 7.9 44 171-215 126-169 (346)
212 PRK12723 flagellar biosynthesi 97.5 0.0033 7.1E-08 59.6 14.2 158 65-268 175-337 (388)
213 PRK11889 flhF flagellar biosyn 97.5 0.009 2E-07 56.1 16.5 156 65-268 242-402 (436)
214 PF13871 Helicase_C_4: Helicas 97.4 0.00057 1.2E-08 61.0 7.9 64 313-376 52-124 (278)
215 PF00448 SRP54: SRP54-type pro 97.4 0.00042 9.1E-09 59.4 6.6 54 173-226 82-136 (196)
216 COG3421 Uncharacterized protei 97.4 0.0078 1.7E-07 58.4 15.3 142 69-217 2-167 (812)
217 PRK06921 hypothetical protein; 97.4 0.0035 7.5E-08 56.6 12.3 45 64-116 117-161 (266)
218 cd00009 AAA The AAA+ (ATPases 97.3 0.003 6.4E-08 51.2 10.9 17 64-80 19-35 (151)
219 PRK14722 flhF flagellar biosyn 97.3 0.002 4.2E-08 60.6 10.6 161 27-219 81-261 (374)
220 PRK11773 uvrD DNA-dependent he 97.2 0.0019 4.1E-08 67.2 10.3 108 49-185 9-119 (721)
221 TIGR01075 uvrD DNA helicase II 97.2 0.0014 2.9E-08 68.3 8.9 71 48-124 3-73 (715)
222 PRK14974 cell division protein 97.2 0.0065 1.4E-07 56.4 12.3 129 66-226 142-275 (336)
223 PRK05703 flhF flagellar biosyn 97.2 0.02 4.4E-07 55.3 15.9 128 64-226 221-354 (424)
224 PRK06835 DNA replication prote 97.1 0.0046 1E-07 57.4 10.9 45 64-117 183-227 (329)
225 PRK12377 putative replication 97.1 0.0029 6.2E-08 56.2 9.1 45 65-118 102-146 (248)
226 smart00382 AAA ATPases associa 97.1 0.0014 3.1E-08 52.7 6.6 41 64-112 2-42 (148)
227 PRK05642 DNA replication initi 97.1 0.003 6.5E-08 56.0 8.9 44 174-217 97-141 (234)
228 PRK08116 hypothetical protein; 97.1 0.0093 2E-07 53.9 12.1 44 65-117 115-158 (268)
229 PHA02533 17 large terminase pr 97.1 0.0059 1.3E-07 60.6 11.4 149 46-214 57-209 (534)
230 PRK10919 ATP-dependent DNA hel 97.1 0.0031 6.7E-08 65.0 9.8 71 49-125 2-72 (672)
231 cd01124 KaiC KaiC is a circadi 97.0 0.0043 9.4E-08 52.9 8.7 48 67-123 2-49 (187)
232 PRK11054 helD DNA helicase IV; 97.0 0.0041 8.8E-08 63.7 9.6 79 49-133 196-274 (684)
233 PRK07952 DNA replication prote 97.0 0.017 3.6E-07 51.2 12.3 40 65-113 100-139 (244)
234 COG2256 MGS1 ATPase related to 97.0 0.0039 8.3E-08 57.8 8.3 47 65-122 49-95 (436)
235 PRK08727 hypothetical protein; 96.9 0.0053 1.1E-07 54.4 9.1 18 65-82 42-59 (233)
236 COG1484 DnaC DNA replication p 96.9 0.0049 1.1E-07 55.2 8.8 51 63-122 104-154 (254)
237 PRK08084 DNA replication initi 96.9 0.0063 1.4E-07 54.0 9.1 18 65-82 46-63 (235)
238 PRK14712 conjugal transfer nic 96.9 0.012 2.6E-07 65.0 12.5 63 49-117 835-901 (1623)
239 PRK06731 flhF flagellar biosyn 96.8 0.12 2.6E-06 46.6 16.8 156 65-268 76-236 (270)
240 PF05970 PIF1: PIF1-like helic 96.8 0.0035 7.6E-08 59.6 7.5 59 50-116 2-66 (364)
241 PRK06893 DNA replication initi 96.8 0.0056 1.2E-07 54.1 8.2 46 173-218 90-137 (229)
242 PRK12422 chromosomal replicati 96.8 0.0082 1.8E-07 58.4 10.0 42 65-115 142-183 (445)
243 cd01120 RecA-like_NTPases RecA 96.8 0.017 3.6E-07 47.8 10.7 38 67-112 2-39 (165)
244 PRK08903 DnaA regulatory inact 96.8 0.025 5.3E-07 50.0 12.0 43 174-217 90-133 (227)
245 PF00308 Bac_DnaA: Bacterial d 96.8 0.0026 5.7E-08 55.7 5.5 106 66-218 36-143 (219)
246 KOG0701 dsRNA-specific nucleas 96.7 0.0018 3.8E-08 70.5 5.1 93 274-366 294-398 (1606)
247 PRK14723 flhF flagellar biosyn 96.7 0.021 4.6E-07 58.5 12.4 128 66-226 187-317 (767)
248 PRK14087 dnaA chromosomal repl 96.7 0.013 2.8E-07 57.2 10.5 50 65-121 142-191 (450)
249 PF05876 Terminase_GpA: Phage 96.7 0.0044 9.6E-08 62.1 7.3 127 49-188 16-148 (557)
250 PRK05707 DNA polymerase III su 96.7 0.0099 2.1E-07 55.4 9.1 35 49-83 3-41 (328)
251 PRK10917 ATP-dependent DNA hel 96.7 0.013 2.7E-07 60.7 10.7 84 263-346 301-389 (681)
252 PRK12727 flagellar biosynthesi 96.7 0.16 3.5E-06 49.9 17.4 164 27-225 299-480 (559)
253 TIGR01074 rep ATP-dependent DN 96.7 0.011 2.4E-07 61.3 10.3 70 50-125 2-71 (664)
254 PRK13709 conjugal transfer nic 96.7 0.027 5.9E-07 63.1 13.5 65 49-117 967-1033(1747)
255 COG1435 Tdk Thymidine kinase [ 96.7 0.025 5.4E-07 47.3 10.1 88 67-186 7-94 (201)
256 PTZ00112 origin recognition co 96.6 0.024 5.2E-07 58.4 11.5 22 67-89 784-805 (1164)
257 PRK09183 transposase/IS protei 96.6 0.012 2.6E-07 52.9 8.7 24 61-84 99-122 (259)
258 PRK00149 dnaA chromosomal repl 96.6 0.0079 1.7E-07 59.0 8.1 47 65-118 149-195 (450)
259 PF14617 CMS1: U3-containing 9 96.5 0.008 1.7E-07 53.0 7.0 87 98-185 124-212 (252)
260 TIGR02785 addA_Gpos recombinat 96.5 0.012 2.5E-07 65.1 9.7 123 50-185 2-126 (1232)
261 PRK00771 signal recognition pa 96.5 0.023 4.9E-07 54.9 10.4 52 175-226 176-228 (437)
262 TIGR03420 DnaA_homol_Hda DnaA 96.5 0.026 5.6E-07 49.8 10.1 19 64-82 38-56 (226)
263 PRK14873 primosome assembly pr 96.5 0.028 6.1E-07 57.4 11.4 93 256-349 171-266 (665)
264 PRK11331 5-methylcytosine-spec 96.5 0.013 2.8E-07 56.1 8.3 33 50-82 180-212 (459)
265 PHA03333 putative ATPase subun 96.5 0.11 2.5E-06 52.1 14.9 70 49-125 169-241 (752)
266 PF03354 Terminase_1: Phage Te 96.4 0.014 3.1E-07 57.6 8.9 71 52-126 1-80 (477)
267 PF05496 RuvB_N: Holliday junc 96.4 0.016 3.5E-07 49.9 7.8 18 65-82 51-68 (233)
268 PRK08769 DNA polymerase III su 96.4 0.032 7E-07 51.6 10.4 37 47-83 2-45 (319)
269 PRK14086 dnaA chromosomal repl 96.4 0.018 3.9E-07 57.5 9.3 106 66-218 316-423 (617)
270 TIGR01073 pcrA ATP-dependent D 96.4 0.02 4.3E-07 59.9 10.2 72 48-125 3-74 (726)
271 PTZ00293 thymidine kinase; Pro 96.4 0.033 7.2E-07 47.8 9.7 37 65-109 5-41 (211)
272 COG5008 PilU Tfp pilus assembl 96.4 0.011 2.3E-07 51.7 6.5 69 1-88 59-150 (375)
273 COG3972 Superfamily I DNA and 96.4 0.2 4.3E-06 48.0 15.1 71 47-124 160-230 (660)
274 cd01122 GP4d_helicase GP4d_hel 96.3 0.017 3.6E-07 52.7 8.3 55 60-122 26-80 (271)
275 PF00004 AAA: ATPase family as 96.3 0.05 1.1E-06 43.1 10.2 15 67-81 1-15 (132)
276 TIGR00643 recG ATP-dependent D 96.3 0.024 5.2E-07 58.1 10.2 84 263-346 275-363 (630)
277 PRK07003 DNA polymerase III su 96.3 0.053 1.2E-06 55.3 12.1 39 173-212 118-156 (830)
278 PRK12726 flagellar biosynthesi 96.3 0.19 4E-06 47.3 14.8 118 65-216 207-328 (407)
279 TIGR00362 DnaA chromosomal rep 96.3 0.013 2.7E-07 56.9 7.6 36 66-107 138-173 (405)
280 PRK12402 replication factor C 96.3 0.038 8.1E-07 52.1 10.5 39 173-212 124-162 (337)
281 PRK14088 dnaA chromosomal repl 96.3 0.065 1.4E-06 52.3 12.2 38 65-108 131-168 (440)
282 TIGR00595 priA primosomal prot 96.2 0.042 9.1E-07 54.6 10.9 77 271-348 24-101 (505)
283 PF05127 Helicase_RecD: Helica 96.2 0.0057 1.2E-07 50.9 3.9 124 68-216 1-124 (177)
284 PRK12724 flagellar biosynthesi 96.2 0.26 5.7E-06 47.1 15.4 82 173-268 298-384 (432)
285 TIGR01547 phage_term_2 phage t 96.2 0.028 6.1E-07 54.3 9.2 134 67-217 4-142 (396)
286 TIGR02760 TraI_TIGR conjugativ 96.2 0.055 1.2E-06 62.2 12.6 62 49-117 1019-1085(1960)
287 KOG2028 ATPase related to the 96.1 0.023 4.9E-07 52.0 7.5 50 65-122 163-212 (554)
288 PRK05580 primosome assembly pr 96.1 0.052 1.1E-06 56.1 11.1 78 271-349 189-267 (679)
289 PRK08533 flagellar accessory p 96.1 0.086 1.9E-06 46.6 11.1 53 62-123 22-74 (230)
290 TIGR01425 SRP54_euk signal rec 96.1 0.15 3.2E-06 49.0 13.2 53 174-226 182-235 (429)
291 COG3973 Superfamily I DNA and 96.1 0.04 8.7E-07 53.8 9.3 60 64-125 226-285 (747)
292 PF13173 AAA_14: AAA domain 96.1 0.067 1.4E-06 42.4 9.4 38 174-215 61-98 (128)
293 PLN03025 replication factor C 96.0 0.1 2.2E-06 48.8 11.8 39 174-214 99-137 (319)
294 PRK13833 conjugal transfer pro 96.0 0.026 5.7E-07 52.1 7.6 63 42-112 123-186 (323)
295 PF05621 TniB: Bacterial TniB 96.0 0.037 8E-07 50.0 8.3 123 65-214 62-188 (302)
296 TIGR00580 mfd transcription-re 96.0 0.039 8.4E-07 58.6 9.7 81 265-345 493-578 (926)
297 COG1444 Predicted P-loop ATPas 96.0 0.082 1.8E-06 53.9 11.5 149 42-216 207-357 (758)
298 PRK14964 DNA polymerase III su 96.0 0.042 9.1E-07 53.8 9.2 21 65-85 36-56 (491)
299 PHA02544 44 clamp loader, smal 96.0 0.042 9.1E-07 51.3 9.1 39 174-212 100-138 (316)
300 PRK05973 replicative DNA helic 95.9 0.071 1.5E-06 46.9 9.6 65 49-123 50-114 (237)
301 PRK14721 flhF flagellar biosyn 95.9 0.24 5.2E-06 47.6 13.8 159 64-268 191-351 (420)
302 PRK07994 DNA polymerase III su 95.9 0.095 2.1E-06 53.1 11.5 38 173-211 118-155 (647)
303 COG1198 PriA Primosomal protei 95.9 0.047 1E-06 55.8 9.4 93 253-346 225-319 (730)
304 PF01695 IstB_IS21: IstB-like 95.9 0.018 3.9E-07 48.5 5.6 46 62-116 45-90 (178)
305 TIGR02688 conserved hypothetic 95.9 0.055 1.2E-06 51.3 9.2 50 33-83 171-228 (449)
306 COG0593 DnaA ATPase involved i 95.9 0.084 1.8E-06 50.1 10.4 47 174-220 175-223 (408)
307 TIGR02881 spore_V_K stage V sp 95.8 0.1 2.2E-06 47.1 10.7 19 65-83 43-61 (261)
308 PRK04195 replication factor C 95.8 0.092 2E-06 52.1 11.2 18 64-81 39-56 (482)
309 PRK13341 recombination factor 95.8 0.077 1.7E-06 54.8 10.8 39 174-217 109-147 (725)
310 PF13177 DNA_pol3_delta2: DNA 95.8 0.032 7E-07 46.2 6.7 42 173-215 101-142 (162)
311 PRK00411 cdc6 cell division co 95.8 0.12 2.6E-06 49.9 11.7 25 65-90 56-80 (394)
312 PRK14960 DNA polymerase III su 95.7 0.085 1.8E-06 53.1 10.4 40 173-214 117-156 (702)
313 TIGR03881 KaiC_arch_4 KaiC dom 95.7 0.15 3.3E-06 45.0 11.2 52 63-123 19-70 (229)
314 KOG1513 Nuclear helicase MOP-3 95.7 0.01 2.3E-07 59.3 3.9 156 48-215 263-454 (1300)
315 PRK12323 DNA polymerase III su 95.7 0.11 2.4E-06 52.2 10.9 40 173-213 123-162 (700)
316 PRK13342 recombination factor 95.7 0.099 2.2E-06 50.7 10.6 18 65-82 37-54 (413)
317 PRK06964 DNA polymerase III su 95.7 0.082 1.8E-06 49.4 9.5 36 50-85 2-42 (342)
318 PRK07764 DNA polymerase III su 95.6 0.13 2.8E-06 54.0 11.8 39 173-212 119-157 (824)
319 COG1200 RecG RecG-like helicas 95.6 0.078 1.7E-06 52.9 9.6 89 258-346 297-390 (677)
320 TIGR00064 ftsY signal recognit 95.6 0.16 3.5E-06 46.0 11.1 54 173-226 153-213 (272)
321 PRK14956 DNA polymerase III su 95.6 0.061 1.3E-06 52.2 8.7 17 67-83 43-59 (484)
322 PRK13894 conjugal transfer ATP 95.6 0.034 7.4E-07 51.5 6.8 66 39-112 124-190 (319)
323 COG1197 Mfd Transcription-repa 95.6 0.067 1.5E-06 56.6 9.5 81 265-345 636-721 (1139)
324 PRK14958 DNA polymerase III su 95.6 0.15 3.2E-06 50.7 11.5 39 173-212 118-156 (509)
325 TIGR02782 TrbB_P P-type conjug 95.6 0.061 1.3E-06 49.5 8.2 65 40-112 109-174 (299)
326 TIGR03877 thermo_KaiC_1 KaiC d 95.5 0.085 1.8E-06 46.9 8.8 52 64-124 21-72 (237)
327 PRK06871 DNA polymerase III su 95.5 0.15 3.3E-06 47.3 10.5 41 173-214 106-146 (325)
328 cd00561 CobA_CobO_BtuR ATP:cor 95.5 0.16 3.4E-06 41.7 9.4 53 172-224 93-147 (159)
329 COG4626 Phage terminase-like p 95.5 0.11 2.4E-06 50.6 9.8 152 45-214 58-224 (546)
330 KOG0738 AAA+-type ATPase [Post 95.4 0.055 1.2E-06 50.1 7.2 80 26-117 182-286 (491)
331 COG2804 PulE Type II secretory 95.4 0.045 9.7E-07 52.8 6.9 41 51-92 243-285 (500)
332 PRK14961 DNA polymerase III su 95.4 0.2 4.2E-06 47.8 11.4 18 66-83 40-57 (363)
333 PRK06995 flhF flagellar biosyn 95.4 0.08 1.7E-06 51.7 8.7 21 65-85 257-277 (484)
334 COG0470 HolB ATPase involved i 95.4 0.14 3E-06 47.9 10.4 40 173-213 108-147 (325)
335 PF06745 KaiC: KaiC; InterPro 95.3 0.097 2.1E-06 46.1 8.6 53 64-124 19-71 (226)
336 KOG0739 AAA+-type ATPase [Post 95.3 0.56 1.2E-05 42.1 12.8 110 59-219 156-281 (439)
337 PRK08699 DNA polymerase III su 95.3 0.14 3E-06 47.7 9.8 35 50-84 2-41 (325)
338 PF03969 AFG1_ATPase: AFG1-lik 95.3 0.31 6.8E-06 46.0 12.1 109 64-218 62-171 (362)
339 PRK08939 primosomal protein Dn 95.3 0.11 2.4E-06 47.9 9.0 27 64-91 156-182 (306)
340 PHA00729 NTP-binding motif con 95.3 0.53 1.2E-05 41.0 12.5 17 66-82 19-35 (226)
341 PRK06904 replicative DNA helic 95.3 0.32 7E-06 47.8 12.6 118 61-188 218-348 (472)
342 PRK06620 hypothetical protein; 95.2 0.069 1.5E-06 46.5 7.1 17 65-81 45-61 (214)
343 PRK06645 DNA polymerase III su 95.2 0.21 4.5E-06 49.4 11.0 18 66-83 45-62 (507)
344 TIGR03015 pepcterm_ATPase puta 95.2 0.34 7.4E-06 43.9 12.0 33 49-81 23-60 (269)
345 PRK14949 DNA polymerase III su 95.2 0.11 2.4E-06 54.1 9.3 37 173-210 118-154 (944)
346 PRK08691 DNA polymerase III su 95.2 0.23 5.1E-06 50.4 11.4 39 173-212 118-156 (709)
347 PRK06067 flagellar accessory p 95.2 0.29 6.3E-06 43.4 11.0 52 64-124 25-76 (234)
348 cd01121 Sms Sms (bacterial rad 95.2 0.18 3.9E-06 47.9 10.1 51 64-123 82-132 (372)
349 PRK11823 DNA repair protein Ra 95.2 0.16 3.5E-06 49.6 10.1 52 64-124 80-131 (446)
350 PRK07993 DNA polymerase III su 95.1 0.093 2E-06 49.1 8.1 42 172-214 106-147 (334)
351 COG1110 Reverse gyrase [DNA re 95.1 0.083 1.8E-06 54.9 8.1 62 271-332 124-191 (1187)
352 PRK06090 DNA polymerase III su 95.1 0.12 2.6E-06 47.8 8.6 42 172-214 106-147 (319)
353 PF06733 DEAD_2: DEAD_2; Inte 95.1 0.019 4.1E-07 48.4 3.1 45 145-189 114-160 (174)
354 PHA03368 DNA packaging termina 95.1 0.11 2.4E-06 52.0 8.6 132 64-215 254-390 (738)
355 CHL00181 cbbX CbbX; Provisiona 95.0 0.43 9.4E-06 43.7 12.0 19 65-83 60-78 (287)
356 PRK07940 DNA polymerase III su 95.0 0.18 4E-06 48.2 9.9 42 173-216 116-157 (394)
357 COG4962 CpaF Flp pilus assembl 95.0 0.084 1.8E-06 48.4 7.1 58 46-112 154-212 (355)
358 PRK04841 transcriptional regul 95.0 0.34 7.4E-06 52.4 13.2 44 173-216 120-163 (903)
359 TIGR03600 phage_DnaB phage rep 95.0 0.25 5.5E-06 48.1 11.0 122 57-188 187-319 (421)
360 COG1474 CDC6 Cdc6-related prot 94.9 0.53 1.1E-05 44.6 12.6 26 65-91 43-68 (366)
361 TIGR02524 dot_icm_DotB Dot/Icm 94.9 0.067 1.5E-06 50.4 6.4 27 63-90 133-159 (358)
362 PRK14965 DNA polymerase III su 94.9 0.24 5.2E-06 50.2 10.7 39 173-212 118-156 (576)
363 PRK10436 hypothetical protein; 94.9 0.1 2.2E-06 50.9 7.8 45 43-91 198-244 (462)
364 PRK05986 cob(I)alamin adenolsy 94.9 0.25 5.4E-06 41.7 9.1 145 63-224 21-167 (191)
365 cd00984 DnaB_C DnaB helicase C 94.9 0.26 5.6E-06 43.9 10.0 40 62-108 11-50 (242)
366 PRK09111 DNA polymerase III su 94.9 0.16 3.4E-06 51.4 9.3 40 172-212 130-169 (598)
367 PRK10689 transcription-repair 94.8 0.16 3.5E-06 55.4 10.0 76 270-345 647-727 (1147)
368 PRK14952 DNA polymerase III su 94.8 0.54 1.2E-05 47.4 12.9 39 173-212 117-155 (584)
369 KOG0991 Replication factor C, 94.8 0.045 9.8E-07 47.0 4.4 37 173-210 112-148 (333)
370 PRK10867 signal recognition pa 94.8 0.36 7.9E-06 46.7 11.1 20 66-85 102-121 (433)
371 PRK14962 DNA polymerase III su 94.7 0.32 6.9E-06 47.8 10.9 18 66-83 38-55 (472)
372 TIGR02928 orc1/cdc6 family rep 94.7 0.15 3.3E-06 48.7 8.6 25 65-90 41-65 (365)
373 COG0552 FtsY Signal recognitio 94.7 0.59 1.3E-05 42.8 11.5 131 66-225 141-279 (340)
374 PRK14951 DNA polymerase III su 94.6 0.16 3.4E-06 51.4 8.6 17 67-83 41-57 (618)
375 PRK14969 DNA polymerase III su 94.6 0.35 7.6E-06 48.4 11.0 39 173-212 118-156 (527)
376 PRK00440 rfc replication facto 94.6 0.56 1.2E-05 43.7 12.0 38 174-212 102-139 (319)
377 PRK14957 DNA polymerase III su 94.6 0.36 7.8E-06 48.2 10.9 39 173-212 118-156 (546)
378 PRK05563 DNA polymerase III su 94.5 0.43 9.4E-06 48.1 11.5 20 66-85 40-59 (559)
379 PRK14955 DNA polymerase III su 94.5 0.28 6.1E-06 47.3 9.9 19 66-84 40-58 (397)
380 TIGR02525 plasmid_TraJ plasmid 94.5 0.12 2.6E-06 48.9 7.0 27 64-91 149-175 (372)
381 COG3267 ExeA Type II secretory 94.4 0.43 9.3E-06 41.9 9.6 30 60-90 46-76 (269)
382 TIGR00959 ffh signal recogniti 94.4 0.45 9.7E-06 46.0 10.9 20 66-85 101-120 (428)
383 PRK11034 clpA ATP-dependent Cl 94.4 0.61 1.3E-05 48.7 12.5 19 65-83 208-226 (758)
384 PRK13851 type IV secretion sys 94.4 0.071 1.5E-06 49.9 5.3 43 61-112 159-201 (344)
385 TIGR00708 cobA cob(I)alamin ad 94.4 0.45 9.8E-06 39.6 9.4 53 172-224 95-149 (173)
386 TIGR02880 cbbX_cfxQ probable R 94.4 0.71 1.5E-05 42.2 11.7 18 65-82 59-76 (284)
387 TIGR00678 holB DNA polymerase 94.4 0.48 1E-05 40.3 10.1 24 66-90 16-39 (188)
388 TIGR02538 type_IV_pilB type IV 94.3 0.15 3.2E-06 51.5 7.8 45 42-90 295-341 (564)
389 PRK07471 DNA polymerase III su 94.3 0.34 7.3E-06 46.0 9.7 43 172-215 139-181 (365)
390 PF00265 TK: Thymidine kinase; 94.3 0.054 1.2E-06 45.4 3.9 35 67-109 4-38 (176)
391 COG2909 MalT ATP-dependent tra 94.3 0.93 2E-05 46.7 12.9 43 174-216 129-171 (894)
392 PHA02535 P terminase ATPase su 94.3 1.3 2.9E-05 44.1 13.8 93 26-125 115-207 (581)
393 PRK08840 replicative DNA helic 94.2 0.78 1.7E-05 45.1 12.2 121 56-187 209-342 (464)
394 PRK14959 DNA polymerase III su 94.1 0.25 5.5E-06 49.7 8.7 20 66-85 40-59 (624)
395 TIGR02639 ClpA ATP-dependent C 94.1 0.76 1.6E-05 48.2 12.6 18 65-82 204-221 (731)
396 PRK14954 DNA polymerase III su 94.1 0.4 8.6E-06 48.7 10.1 19 66-84 40-58 (620)
397 cd03115 SRP The signal recogni 94.1 1.7 3.6E-05 36.4 12.6 17 67-83 3-19 (173)
398 TIGR03499 FlhF flagellar biosy 94.1 0.11 2.3E-06 47.6 5.6 19 65-83 195-213 (282)
399 PRK10416 signal recognition pa 94.0 1.5 3.3E-05 40.7 13.2 53 173-225 195-254 (318)
400 PF01443 Viral_helicase1: Vira 94.0 0.078 1.7E-06 47.0 4.6 14 67-80 1-14 (234)
401 PRK08506 replicative DNA helic 94.0 0.62 1.3E-05 46.0 11.2 115 63-188 191-316 (472)
402 TIGR03689 pup_AAA proteasome A 94.0 0.25 5.4E-06 48.8 8.3 17 64-80 216-232 (512)
403 TIGR03878 thermo_KaiC_2 KaiC d 94.0 0.91 2E-05 40.9 11.4 37 63-107 35-71 (259)
404 PF03237 Terminase_6: Terminas 93.9 1.2 2.7E-05 42.3 13.2 146 68-230 1-154 (384)
405 PRK14950 DNA polymerase III su 93.9 0.87 1.9E-05 46.4 12.2 18 66-83 40-57 (585)
406 cd01129 PulE-GspE PulE/GspE Th 93.8 0.21 4.6E-06 45.1 7.0 44 42-89 59-104 (264)
407 PRK14963 DNA polymerase III su 93.7 0.38 8.1E-06 47.8 9.1 23 67-90 39-61 (504)
408 PRK13764 ATPase; Provisional 93.7 0.16 3.5E-06 51.0 6.6 28 63-91 256-283 (602)
409 PRK05896 DNA polymerase III su 93.7 0.84 1.8E-05 45.9 11.4 18 66-83 40-57 (605)
410 PRK04328 hypothetical protein; 93.7 0.58 1.3E-05 41.9 9.5 52 64-124 23-74 (249)
411 TIGR02533 type_II_gspE general 93.6 0.17 3.6E-06 50.0 6.4 45 42-90 221-267 (486)
412 PRK08006 replicative DNA helic 93.6 1.2 2.7E-05 43.8 12.4 115 62-187 222-349 (471)
413 PRK10865 protein disaggregatio 93.5 0.69 1.5E-05 49.3 11.2 18 65-82 200-217 (857)
414 PRK05748 replicative DNA helic 93.5 1 2.2E-05 44.3 11.7 115 63-187 202-327 (448)
415 COG1702 PhoH Phosphate starvat 93.5 0.4 8.8E-06 43.9 8.1 56 47-108 126-181 (348)
416 PRK13900 type IV secretion sys 93.5 0.11 2.4E-06 48.5 4.7 43 61-112 157-199 (332)
417 PRK07004 replicative DNA helic 93.4 0.55 1.2E-05 46.1 9.7 116 62-188 211-338 (460)
418 PRK08451 DNA polymerase III su 93.4 0.64 1.4E-05 46.2 10.1 39 173-212 116-154 (535)
419 KOG0730 AAA+-type ATPase [Post 93.4 0.86 1.9E-05 45.5 10.6 67 12-81 416-485 (693)
420 KOG0742 AAA+-type ATPase [Post 93.3 0.15 3.2E-06 47.7 5.0 16 65-80 385-400 (630)
421 TIGR03346 chaperone_ClpB ATP-d 93.2 0.8 1.7E-05 48.9 11.2 18 65-82 195-212 (852)
422 KOG0741 AAA+-type ATPase [Post 93.2 0.087 1.9E-06 50.8 3.5 60 19-80 208-272 (744)
423 CHL00095 clpC Clp protease ATP 93.2 1 2.3E-05 47.9 12.0 19 65-83 201-219 (821)
424 TIGR00665 DnaB replicative DNA 93.2 0.98 2.1E-05 44.2 11.1 112 63-187 194-318 (434)
425 TIGR01420 pilT_fam pilus retra 93.2 0.31 6.8E-06 45.9 7.3 42 64-112 122-163 (343)
426 PRK09112 DNA polymerase III su 93.2 0.64 1.4E-05 43.8 9.3 40 173-213 140-179 (351)
427 PF05729 NACHT: NACHT domain 93.1 0.75 1.6E-05 37.9 8.9 24 67-91 3-26 (166)
428 TIGR00635 ruvB Holliday juncti 93.1 0.22 4.7E-06 46.2 6.1 17 65-81 31-47 (305)
429 PRK14971 DNA polymerase III su 93.0 1.1 2.4E-05 45.7 11.4 41 172-214 119-159 (614)
430 TIGR02655 circ_KaiC circadian 93.0 0.67 1.5E-05 46.0 9.7 60 56-124 250-314 (484)
431 PRK14948 DNA polymerase III su 93.0 0.73 1.6E-05 47.0 10.1 19 65-83 39-57 (620)
432 COG0464 SpoVK ATPases of the A 93.0 2.2 4.7E-05 42.7 13.4 62 19-83 231-295 (494)
433 COG2812 DnaX DNA polymerase II 93.0 0.13 2.8E-06 50.4 4.5 40 172-214 117-156 (515)
434 COG4907 Predicted membrane pro 93.0 0.077 1.7E-06 49.7 2.8 9 71-79 178-186 (595)
435 PF03796 DnaB_C: DnaB-like hel 92.9 0.87 1.9E-05 41.1 9.6 117 63-189 18-145 (259)
436 cd01128 rho_factor Transcripti 92.9 0.65 1.4E-05 41.4 8.6 20 61-80 13-32 (249)
437 TIGR02012 tigrfam_recA protein 92.9 0.35 7.7E-06 44.7 7.0 42 64-113 55-96 (321)
438 PRK08760 replicative DNA helic 92.9 1.7 3.6E-05 43.0 12.1 112 64-187 229-352 (476)
439 PRK09376 rho transcription ter 92.8 0.3 6.6E-06 46.1 6.4 87 1-90 81-194 (416)
440 TIGR03819 heli_sec_ATPase heli 92.8 0.23 4.9E-06 46.6 5.7 63 39-112 154-217 (340)
441 TIGR03880 KaiC_arch_3 KaiC dom 92.7 0.83 1.8E-05 40.1 8.9 52 64-124 16-67 (224)
442 PF02572 CobA_CobO_BtuR: ATP:c 92.6 3.1 6.7E-05 34.6 11.5 52 172-223 94-147 (172)
443 PF02456 Adeno_IVa2: Adenoviru 92.6 0.31 6.7E-06 43.9 5.9 83 20-113 29-130 (369)
444 PRK09087 hypothetical protein; 92.6 0.57 1.2E-05 41.2 7.7 40 176-217 89-128 (226)
445 TIGR00767 rho transcription te 92.5 1.1 2.4E-05 42.6 9.8 20 61-80 165-184 (415)
446 PRK06305 DNA polymerase III su 92.5 1.5 3.3E-05 42.9 11.2 18 66-83 41-58 (451)
447 COG1219 ClpX ATP-dependent pro 92.5 0.1 2.3E-06 47.0 2.8 18 65-82 98-115 (408)
448 PF02534 T4SS-DNA_transf: Type 92.4 0.16 3.5E-06 50.3 4.5 49 65-123 45-93 (469)
449 cd01126 TraG_VirD4 The TraG/Tr 92.4 0.12 2.6E-06 49.7 3.5 47 66-122 1-47 (384)
450 TIGR01243 CDC48 AAA family ATP 92.4 1.1 2.3E-05 47.2 10.7 18 63-80 211-228 (733)
451 PRK05636 replicative DNA helic 92.4 0.99 2.2E-05 44.8 9.8 112 65-187 266-388 (505)
452 TIGR01241 FtsH_fam ATP-depende 92.3 0.77 1.7E-05 45.8 9.1 55 24-81 49-105 (495)
453 KOG0780 Signal recognition par 92.3 1.1 2.5E-05 41.7 9.2 56 171-226 180-236 (483)
454 PRK09354 recA recombinase A; P 92.3 0.46 9.9E-06 44.4 6.9 43 64-114 60-102 (349)
455 COG2255 RuvB Holliday junction 92.3 0.37 8.1E-06 42.9 5.9 18 65-82 53-70 (332)
456 TIGR01243 CDC48 AAA family ATP 92.2 0.76 1.6E-05 48.3 9.4 18 64-81 487-504 (733)
457 PRK13897 type IV secretion sys 92.2 0.19 4E-06 50.8 4.6 57 65-135 159-215 (606)
458 cd01130 VirB11-like_ATPase Typ 92.2 0.43 9.3E-06 40.6 6.3 31 50-80 10-41 (186)
459 KOG0383 Predicted helicase [Ge 92.2 0.072 1.6E-06 53.8 1.7 75 260-335 618-696 (696)
460 KOG0741 AAA+-type ATPase [Post 92.2 0.96 2.1E-05 44.0 8.9 68 32-109 494-573 (744)
461 COG0466 Lon ATP-dependent Lon 92.1 1 2.3E-05 45.5 9.4 64 135-203 383-446 (782)
462 TIGR03345 VI_ClpV1 type VI sec 92.1 2.1 4.4E-05 45.7 12.3 30 53-82 191-226 (852)
463 COG2109 BtuR ATP:corrinoid ade 92.1 2.1 4.4E-05 35.9 9.6 53 173-225 121-175 (198)
464 KOG0732 AAA+-type ATPase conta 92.1 0.24 5.2E-06 52.3 5.2 54 26-80 261-315 (1080)
465 PF12846 AAA_10: AAA-like doma 92.0 0.28 6E-06 45.3 5.3 41 65-113 2-42 (304)
466 PRK06321 replicative DNA helic 92.0 2.2 4.8E-05 42.1 11.6 112 65-187 227-349 (472)
467 TIGR00416 sms DNA repair prote 92.0 1.1 2.3E-05 44.0 9.4 51 64-123 94-144 (454)
468 PRK00080 ruvB Holliday junctio 91.9 0.5 1.1E-05 44.3 6.9 18 65-82 52-69 (328)
469 COG1618 Predicted nucleotide k 91.7 0.95 2.1E-05 36.8 7.1 116 65-199 6-127 (179)
470 PHA00012 I assembly protein 91.7 6.9 0.00015 36.1 13.3 25 67-91 4-28 (361)
471 KOG3973 Uncharacterized conser 91.7 0.17 3.6E-06 45.6 3.2 29 36-64 6-34 (465)
472 TIGR02858 spore_III_AA stage I 91.7 1.5 3.2E-05 39.7 9.3 25 56-80 100-127 (270)
473 PF02606 LpxK: Tetraacyldisacc 91.6 9.3 0.0002 35.7 14.7 56 271-329 226-286 (326)
474 PRK06647 DNA polymerase III su 91.6 0.65 1.4E-05 46.8 7.7 18 66-83 40-57 (563)
475 TIGR02868 CydC thiol reductant 91.6 0.35 7.6E-06 48.8 5.9 20 61-80 358-377 (529)
476 PF13481 AAA_25: AAA domain; P 91.5 1.2 2.7E-05 37.9 8.5 62 63-125 31-94 (193)
477 COG1132 MdlB ABC-type multidru 91.5 0.6 1.3E-05 47.5 7.5 34 172-205 481-514 (567)
478 KOG0921 Dosage compensation co 91.4 0.17 3.7E-06 51.9 3.2 44 49-92 406-449 (1282)
479 PRK05595 replicative DNA helic 91.3 0.65 1.4E-05 45.6 7.2 113 64-188 201-325 (444)
480 PRK07399 DNA polymerase III su 91.3 2.8 6.1E-05 38.9 11.0 40 173-214 123-162 (314)
481 PRK07133 DNA polymerase III su 91.2 0.94 2E-05 46.6 8.3 18 66-83 42-59 (725)
482 COG0210 UvrD Superfamily I DNA 91.2 0.63 1.4E-05 48.3 7.4 71 49-125 2-72 (655)
483 PRK05800 cobU adenosylcobinami 91.2 0.83 1.8E-05 38.1 6.8 47 66-123 3-49 (170)
484 TIGR00614 recQ_fam ATP-depende 91.2 1.4 3E-05 43.6 9.5 60 271-330 50-109 (470)
485 PF00437 T2SE: Type II/IV secr 91.2 0.28 6E-06 44.6 4.3 52 53-112 115-167 (270)
486 COG1485 Predicted ATPase [Gene 91.1 2.5 5.5E-05 39.1 10.1 109 65-219 66-175 (367)
487 KOG0298 DEAD box-containing he 91.1 0.39 8.4E-06 51.3 5.5 96 272-372 1221-1317(1394)
488 KOG0734 AAA+-type ATPase conta 91.0 1.4 3.1E-05 42.9 8.8 44 174-217 396-449 (752)
489 COG4907 Predicted membrane pro 91.0 0.2 4.2E-06 47.1 3.0 10 341-350 452-461 (595)
490 PRK05416 glmZ(sRNA)-inactivati 91.0 2.3 4.9E-05 38.9 9.9 27 280-307 258-284 (288)
491 PRK14953 DNA polymerase III su 91.0 0.92 2E-05 44.9 7.9 17 67-83 41-57 (486)
492 PRK08058 DNA polymerase III su 91.0 1.1 2.4E-05 42.0 8.1 41 172-213 108-148 (329)
493 PRK14701 reverse gyrase; Provi 91.0 1.1 2.4E-05 50.9 9.2 61 271-331 121-187 (1638)
494 PHA00350 putative assembly pro 90.9 1.4 3.1E-05 42.0 8.7 23 67-89 4-27 (399)
495 TIGR02640 gas_vesic_GvpN gas v 90.8 0.51 1.1E-05 42.6 5.5 27 56-82 13-39 (262)
496 cd01125 repA Hexameric Replica 90.6 2.3 5E-05 37.8 9.6 58 67-125 4-65 (239)
497 cd03239 ABC_SMC_head The struc 90.6 0.41 8.9E-06 40.3 4.5 41 173-213 115-156 (178)
498 PRK12608 transcription termina 90.6 1.6 3.5E-05 41.2 8.6 39 52-91 118-159 (380)
499 PF01637 Arch_ATPase: Archaeal 90.5 1.2 2.6E-05 39.1 7.7 23 65-88 21-43 (234)
500 PRK09165 replicative DNA helic 90.4 3.1 6.7E-05 41.4 11.0 121 64-188 217-355 (497)
No 1
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.9e-71 Score=518.41 Aligned_cols=409 Identities=63% Similarity=1.061 Sum_probs=376.8
Q ss_pred HHHHHhcCCeEEecCC-CCCcccccccC-----------------------------CCCHHHHHHHHHCCCCCCcHHHH
Q 013176 6 VKMYRARREITVEGHD-VPRPIRIFQEA-----------------------------NFPDYCLEVIAKLGFVEPTPIQA 55 (448)
Q Consensus 6 ~~~~~~~~~~~~~~~~-~~~p~~~~~~~-----------------------------~l~~~l~~~~~~~~~~~~~~~Q~ 55 (448)
...+....+..+++.. .|.|..+|++. ++++.+...++..||..|+|+|.
T Consensus 40 ~~~~~~~~e~~v~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ls~~~~~~lk~~g~~~PtpIQa 119 (519)
T KOG0331|consen 40 VERKRKKNEITVKGGDSVPKPVKSFEESGFPAKVLEEIPKLSRSSGESDSSAAFQELGLSEELMKALKEQGFEKPTPIQA 119 (519)
T ss_pred cccccCcceeeccCCCCCCCCccchhcccCCccccccccccccccccCCcchhhhcccccHHHHHHHHhcCCCCCchhhh
Confidence 4455566677777644 77777666654 45566666777999999999999
Q ss_pred hHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhc-CCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEE
Q 013176 56 QGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSA-QPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCI 134 (448)
Q Consensus 56 ~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~-~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~ 134 (448)
+.||.+++|+|++..+.||||||++|++|++.++.. .....++.++++|||+||++||.|+.+.+..++....++..|+
T Consensus 120 q~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cv 199 (519)
T KOG0331|consen 120 QGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCV 199 (519)
T ss_pred cccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEE
Confidence 999999999999999999999999999999999987 5666677799999999999999999999999999999999999
Q ss_pred EcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCCCHHHHHHHHHHc-CCCcceEEEec
Q 013176 135 YGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQI-RPDRQTLYWSA 213 (448)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~-~~~~~~v~~SA 213 (448)
+|+.+...+.+.+..+.+|+|+||++|.++++....+++++.++|+||||+|++++|.+.++.|+..+ ++..|.+++||
T Consensus 200 yGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldmGFe~qI~~Il~~i~~~~rQtlm~sa 279 (519)
T KOG0331|consen 200 YGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMGFEPQIRKILSQIPRPDRQTLMFSA 279 (519)
T ss_pred eCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhccccHHHHHHHHHhcCCCcccEEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 56668999999
Q ss_pred cCchHHHHHHHHHcCCCeEEEeCCc-ccccccCcceEEEEecchhHHHHHHHHHHhhh--cCCcEEEEecchhHHHHHHH
Q 013176 214 TWPREVETLARQFLRNPYKVIIGSL-ELKANQSINQVVEVVTEAEKYNRLIKLLKEVM--DGSRILIFTETKKGCDQVTR 290 (448)
Q Consensus 214 T~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~~k~lVf~~~~~~~~~l~~ 290 (448)
|+|..++.++..++.+|..+.+... .......+.+++..++...|...|..+|..+. .+.|+||||++++.|.+++.
T Consensus 280 Twp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~ 359 (519)
T KOG0331|consen 280 TWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELAR 359 (519)
T ss_pred eccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHH
Confidence 9999999999999999999888755 66778889999999999999999999999886 45699999999999999999
Q ss_pred HHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCCCccEEEEcCCCCChhhhhhcccccCCCCCCc
Q 013176 291 QLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVKDIKCVVNYDFPTSLEDYVHRIGRTGRAGARG 370 (448)
Q Consensus 291 ~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g 370 (448)
.|+..++++..|||+.++.+|..+++.|++|+..|||||+++++|+|+|++++||+||+|.++++|+||+||+||.|+.|
T Consensus 360 ~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G 439 (519)
T KOG0331|consen 360 NLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKG 439 (519)
T ss_pred HHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecCCChHHHHHHHHHHHHhCCCCcHHHHhhhhhcCCCCC
Q 013176 371 TAFTFFTHSNAKFARDLIKILQEAGQIVSPALSGLARSAAPSFG 414 (448)
Q Consensus 371 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~ 414 (448)
.+++|+...+......+.+.+++.++.+++.+..+......++.
T Consensus 440 ~A~tfft~~~~~~a~~l~~~l~e~~q~v~~~l~~~~~~~~~~~~ 483 (519)
T KOG0331|consen 440 TAITFFTSDNAKLARELIKVLREAGQTVPPDLLEYARVSGSGGN 483 (519)
T ss_pred eEEEEEeHHHHHHHHHHHHHHHHccCCCChHHHHHHhhcccCCC
Confidence 99999999999999999999999999999999998766554443
No 2
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=3.6e-69 Score=530.84 Aligned_cols=410 Identities=64% Similarity=1.054 Sum_probs=375.0
Q ss_pred CCHHHHHHHHhcCCeEE-ecCCCCCcccccccCCCCHHHHHHHHHCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHH
Q 013176 1 MTETEVKMYRARREITV-EGHDVPRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTL 79 (448)
Q Consensus 1 ~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~ 79 (448)
|+.++++.|....++.+ .|...|.|+.+|+++++++.+.+.++.+||..|+|+|.+++|.+++++|+++++|||||||+
T Consensus 103 ~~~~~~~~~~~~~~i~~~~g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTl 182 (545)
T PTZ00110 103 LSSKEVDEIRKEKEITIIAGENVPKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTL 182 (545)
T ss_pred CCHHHHHHHHHhcCcEEecCCCCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHH
Confidence 57888999999998887 79999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccH
Q 013176 80 SYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPG 159 (448)
Q Consensus 80 ~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~ 159 (448)
+|++|++.++..+.......++.+|||+||++|+.|+.+.+++++...++++.+++++.....+...+..+++|+|+||+
T Consensus 183 aylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPg 262 (545)
T PTZ00110 183 AFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPG 262 (545)
T ss_pred HHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHH
Confidence 99999999887654444445789999999999999999999999988889999999999888888888889999999999
Q ss_pred HHHHHHHccccCCCCccEEEEecccccccCCCHHHHHHHHHHcCCCcceEEEeccCchHHHHHHHHHcC-CCeEEEeCCc
Q 013176 160 RLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLR-NPYKVIIGSL 238 (448)
Q Consensus 160 ~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~-~~~~~~~~~~ 238 (448)
+|.+++......+.++++||+||||++++++|...+..++..+++..|++++|||++..++.++..++. ++..+.+...
T Consensus 263 rL~d~l~~~~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~ 342 (545)
T PTZ00110 263 RLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSL 342 (545)
T ss_pred HHHHHHHcCCCChhhCcEEEeehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCC
Confidence 999999988888999999999999999999999999999999999999999999999999888888775 4666555444
Q ss_pred ccccccCcceEEEEecchhHHHHHHHHHHhhh-cCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHH
Q 013176 239 ELKANQSINQVVEVVTEAEKYNRLIKLLKEVM-DGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAE 317 (448)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~ 317 (448)
.......+.+.+.......+...+..++.... .+.++||||++++.|+.+++.|+..++++..+|+++++++|..+++.
T Consensus 343 ~l~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~ 422 (545)
T PTZ00110 343 DLTACHNIKQEVFVVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNE 422 (545)
T ss_pred ccccCCCeeEEEEEEechhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHH
Confidence 43444566677777777888888888888766 57799999999999999999999999999999999999999999999
Q ss_pred HhcCCCCEEEEeccccCCCCCCCccEEEEcCCCCChhhhhhcccccCCCCCCceEEEEecCCChHHHHHHHHHHHHhCCC
Q 013176 318 FRSGRSPIMTATDVAARGLDVKDIKCVVNYDFPTSLEDYVHRIGRTGRAGARGTAFTFFTHSNAKFARDLIKILQEAGQI 397 (448)
Q Consensus 318 f~~g~~~vLv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~ 397 (448)
|++|+.+|||||+++++|||+|++++||+||+|.++.+|+||+||+||.|..|.+++|+++.+......+.+.+.+.++.
T Consensus 423 F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~~l~~~~q~ 502 (545)
T PTZ00110 423 FKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVKVLREAKQP 502 (545)
T ss_pred HhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHHHHHHccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHhhhhhcC
Q 013176 398 VSPALSGLARSAA 410 (448)
Q Consensus 398 ~~~~l~~~~~~~~ 410 (448)
+++.|.+++....
T Consensus 503 vp~~l~~~~~~~~ 515 (545)
T PTZ00110 503 VPPELEKLSNERS 515 (545)
T ss_pred CCHHHHHHHHHhc
Confidence 9999999976554
No 3
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.2e-67 Score=472.19 Aligned_cols=404 Identities=49% Similarity=0.800 Sum_probs=383.8
Q ss_pred HHHHHHHHhcCCeEEecCCCCCcccccccCCCCHHHHHHHHHCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHH
Q 013176 3 ETEVKMYRARREITVEGHDVPRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYL 82 (448)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~ 82 (448)
..+...+..+-++++.|..+|+|+++|+.+++++.|..+..+.-|..|+|+|.+++|..+.+++++-.|.||||||.+|+
T Consensus 199 ~~d~~~~r~~Lnlrv~g~s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi 278 (731)
T KOG0339|consen 199 KMDVIDLRLTLNLRVSGSSPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFI 278 (731)
T ss_pred cccchhhHhhhcceeccCCCCCCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHH
Confidence 34555667778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHH
Q 013176 83 LPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLI 162 (448)
Q Consensus 83 l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~ 162 (448)
.|++.+++.++...+++++..+|+|||++|+.|+..++++|++.++++++++||+.+..++...+..++.||||||++|+
T Consensus 279 ~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRli 358 (731)
T KOG0339|consen 279 WPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLI 358 (731)
T ss_pred HHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHH
Confidence 99999999999999899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccccCCCCccEEEEecccccccCCCHHHHHHHHHHcCCCcceEEEeccCchHHHHHHHHHcCCCeEEEeCCccccc
Q 013176 163 DMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKA 242 (448)
Q Consensus 163 ~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (448)
+++.-+..++.+.+++||||+++|.+.+|...++.|...+++++|.++||||++..++.+++.++.+|+.+...... ..
T Consensus 359 d~VkmKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vg-ea 437 (731)
T KOG0339|consen 359 DMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVG-EA 437 (731)
T ss_pred HHHHhhcccceeeeEEEEechhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehh-cc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998877544 45
Q ss_pred ccCcceEEEEec-chhHHHHHHHHHHhhhcCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcC
Q 013176 243 NQSINQVVEVVT-EAEKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSG 321 (448)
Q Consensus 243 ~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g 321 (448)
+..+.|.+.++. ...|+.+|...|.+....+++|||+..+..++.++..|+-.++++..+|+++.+.+|.+++..|+.+
T Consensus 438 n~dITQ~V~V~~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk 517 (731)
T KOG0339|consen 438 NEDITQTVSVCPSEEKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKK 517 (731)
T ss_pred ccchhheeeeccCcHHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhc
Confidence 566777776664 6778999999999988888999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeccccCCCCCCCccEEEEcCCCCChhhhhhcccccCCCCCCceEEEEecCCChHHHHHHHHHHHHhCCCCcHH
Q 013176 322 RSPIMTATDVAARGLDVKDIKCVVNYDFPTSLEDYVHRIGRTGRAGARGTAFTFFTHSNAKFARDLIKILQEAGQIVSPA 401 (448)
Q Consensus 322 ~~~vLv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 401 (448)
...|||+|++..+|+|+|.++.||+||...+++.+.||+||+||.|..|.+++++++.+.++.-.|.+.++.++|.+++.
T Consensus 518 ~~~VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~LVnnLe~agQnVP~~ 597 (731)
T KOG0339|consen 518 RKPVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHLVNNLEGAGQNVPDE 597 (731)
T ss_pred CCceEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhcccccccceeeEEechhhHHHhhHHHHHHhhccccCChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhh
Q 013176 402 LSGLAR 407 (448)
Q Consensus 402 l~~~~~ 407 (448)
|.+|+-
T Consensus 598 l~dlam 603 (731)
T KOG0339|consen 598 LMDLAM 603 (731)
T ss_pred HHHHHh
Confidence 999864
No 4
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=7.7e-65 Score=493.50 Aligned_cols=365 Identities=40% Similarity=0.681 Sum_probs=321.3
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCcc-CCCCceEEEE
Q 013176 28 IFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLV-QGEGPIVLVL 106 (448)
Q Consensus 28 ~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~-~~~~~~vlil 106 (448)
+|++++|++.+.+.+.++||..|+|+|.++++.+++++|+++++|||+|||++|++|++..+....... .....++||+
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil 81 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALIL 81 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEE
Confidence 789999999999999999999999999999999999999999999999999999999999886543211 1124579999
Q ss_pred cCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEeccccc
Q 013176 107 APTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRM 186 (448)
Q Consensus 107 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~ 186 (448)
+||++|+.|+.+.++.+....++++..++|+.+...+...+...++|+|+||++|++++......++++++|||||||++
T Consensus 82 ~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~l 161 (456)
T PRK10590 82 TPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRM 161 (456)
T ss_pred eCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHH
Confidence 99999999999999999888889999999999888888888888999999999999998888888999999999999999
Q ss_pred ccCCCHHHHHHHHHHcCCCcceEEEeccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceEEEEecchhHHHHHHHHH
Q 013176 187 LDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLL 266 (448)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 266 (448)
++++|...+..++..++...|++++|||++..+..+...++.++..+.+.... .....+.+.+.......+...+..++
T Consensus 162 l~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~~i~~~~~~~~~~~k~~~l~~l~ 240 (456)
T PRK10590 162 LDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRN-TASEQVTQHVHFVDKKRKRELLSQMI 240 (456)
T ss_pred hccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEeccc-ccccceeEEEEEcCHHHHHHHHHHHH
Confidence 99999999999999998889999999999998888888888888777654332 22334555555555555555555555
Q ss_pred HhhhcCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCCCccEEEE
Q 013176 267 KEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVKDIKCVVN 346 (448)
Q Consensus 267 ~~~~~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~Vi~ 346 (448)
.. ....++||||+++..++.+++.|++.++.+..+|++++.++|..+++.|++|+++|||||+++++|+|+|++++||+
T Consensus 241 ~~-~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~ 319 (456)
T PRK10590 241 GK-GNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVN 319 (456)
T ss_pred Hc-CCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEE
Confidence 43 33468999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChhhhhhcccccCCCCCCceEEEEecCCChHHHHHHHHHHHHh
Q 013176 347 YDFPTSLEDYVHRIGRTGRAGARGTAFTFFTHSNAKFARDLIKILQEA 394 (448)
Q Consensus 347 ~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~ 394 (448)
|++|.++.+|+||+||+||.|..|.+++++...+...++.+.+.+...
T Consensus 320 ~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~ 367 (456)
T PRK10590 320 YELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367 (456)
T ss_pred eCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999888888877765433
No 5
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=5.8e-64 Score=492.81 Aligned_cols=404 Identities=33% Similarity=0.596 Sum_probs=361.4
Q ss_pred CCHHHHHHHHhcCCeEEecCCCCCcccccccCCCCHHHHHHHHHCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHH
Q 013176 1 MTETEVKMYRARREITVEGHDVPRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLS 80 (448)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~ 80 (448)
|+.++++.|....++.+.|...|.|+.+|+++++++.+.+.+...||..|+|+|.++++.+++++|+++++|||||||++
T Consensus 95 ~~~~~~~~~r~~~~i~~~g~~~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTla 174 (518)
T PLN00206 95 LSSSQAELLRRKLEIHVKGEAVPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTAS 174 (518)
T ss_pred CCHHHHHHHHHHCCCEecCCCCCchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCC--ccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEcc
Q 013176 81 YLLPAFVHVSAQPR--LVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATP 158 (448)
Q Consensus 81 ~~l~~l~~~~~~~~--~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~ 158 (448)
|++|++.++..... .....++++||++||++|+.|+.+.++.+....++++..++|+.....+...+..+++|+|+||
T Consensus 175 yllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TP 254 (518)
T PLN00206 175 FLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTP 254 (518)
T ss_pred HHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECH
Confidence 99999988754221 1122478999999999999999999999988888999999999888888888888899999999
Q ss_pred HHHHHHHHccccCCCCccEEEEecccccccCCCHHHHHHHHHHcCCCcceEEEeccCchHHHHHHHHHcCCCeEEEeCCc
Q 013176 159 GRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSL 238 (448)
Q Consensus 159 ~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 238 (448)
++|.+++......+.++++||+||||++++++|...+..++..+ +..|++++|||+++.++.+...+..++..+.....
T Consensus 255 grL~~~l~~~~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l-~~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~ 333 (518)
T PLN00206 255 GRLIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQVMQIFQAL-SQPQVLLFSATVSPEVEKFASSLAKDIILISIGNP 333 (518)
T ss_pred HHHHHHHHcCCccchheeEEEeecHHHHhhcchHHHHHHHHHhC-CCCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCC
Confidence 99999999888889999999999999999999999999998887 56899999999999999999888888777665443
Q ss_pred ccccccCcceEEEEecchhHHHHHHHHHHhhhc-CCcEEEEecchhHHHHHHHHHHh-CCCCeEEEcCCCCHHHHHHHHH
Q 013176 239 ELKANQSINQVVEVVTEAEKYNRLIKLLKEVMD-GSRILIFTETKKGCDQVTRQLRM-DGWPALSIHGDKNQSERDWVLA 316 (448)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~k~lVf~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~r~~~~~ 316 (448)
. .....+.+.........+...+.+++..... ..++||||+++..++.+++.|.. .++.+..+||+++.++|..+++
T Consensus 334 ~-~~~~~v~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~ 412 (518)
T PLN00206 334 N-RPNKAVKQLAIWVETKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMK 412 (518)
T ss_pred C-CCCcceeEEEEeccchhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHH
Confidence 3 3334455666666666777777777765433 35899999999999999999975 5889999999999999999999
Q ss_pred HHhcCCCCEEEEeccccCCCCCCCccEEEEcCCCCChhhhhhcccccCCCCCCceEEEEecCCChHHHHHHHHHHHHhCC
Q 013176 317 EFRSGRSPIMTATDVAARGLDVKDIKCVVNYDFPTSLEDYVHRIGRTGRAGARGTAFTFFTHSNAKFARDLIKILQEAGQ 396 (448)
Q Consensus 317 ~f~~g~~~vLv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~ 396 (448)
.|++|+.+|||||+++++|+|+|++++||+||+|.++.+|+||+||+||.|..|.+++|+.+.+......+.+.++..++
T Consensus 413 ~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~~~l~~~~~ 492 (518)
T PLN00206 413 SFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVALLKSSGA 492 (518)
T ss_pred HHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHhhh
Q 013176 397 IVSPALSGLA 406 (448)
Q Consensus 397 ~~~~~l~~~~ 406 (448)
.+++.+..+.
T Consensus 493 ~vp~~l~~~~ 502 (518)
T PLN00206 493 AIPRELANSR 502 (518)
T ss_pred CCCHHHHhCh
Confidence 9999988765
No 6
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.9e-64 Score=442.26 Aligned_cols=366 Identities=39% Similarity=0.601 Sum_probs=341.0
Q ss_pred CcccccccCCCCHHHHHHHHHCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceE
Q 013176 24 RPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIV 103 (448)
Q Consensus 24 ~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~v 103 (448)
....+|.++++.|.+.++|+..||+.|+++|++++|.++.+++++..+.||||||.+|++|+++++.+++. .+++
T Consensus 58 e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~-----~~~~ 132 (476)
T KOG0330|consen 58 ESFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPK-----LFFA 132 (476)
T ss_pred hhhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCC-----CceE
Confidence 44678999999999999999999999999999999999999999999999999999999999999988654 5889
Q ss_pred EEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHc-cccCCCCccEEEEec
Q 013176 104 LVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEA-QHTNLRRVTYLVLDE 182 (448)
Q Consensus 104 lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~-~~~~~~~~~~iIvDE 182 (448)
+|++||++|+.|+.+.++.++...++++..+.||.....+...+.+.++|+|+||++|++++.+ +.+.+..++++|+||
T Consensus 133 lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDE 212 (476)
T KOG0330|consen 133 LVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDE 212 (476)
T ss_pred EEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhch
Confidence 9999999999999999999999999999999999999999999999999999999999999984 456789999999999
Q ss_pred ccccccCCCHHHHHHHHHHcCCCcceEEEeccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceEEEEecchhHHHHH
Q 013176 183 ADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRL 262 (448)
Q Consensus 183 ~h~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 262 (448)
||+++++.|...+..|+..++..+|.+++|||++..+.++....+.+|..+.....+ ..-..+.|.+...+...|...|
T Consensus 213 ADrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky-~tv~~lkQ~ylfv~~k~K~~yL 291 (476)
T KOG0330|consen 213 ADRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKY-QTVDHLKQTYLFVPGKDKDTYL 291 (476)
T ss_pred HHhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchh-cchHHhhhheEeccccccchhH
Confidence 999999999999999999999999999999999999999998888899988876655 3344567777788888888899
Q ss_pred HHHHHhhhcCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCCCcc
Q 013176 263 IKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVKDIK 342 (448)
Q Consensus 263 ~~~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~ 342 (448)
+.++++.. +..+||||++..++..++-.|+..++.+..+||.|+++.|...++.|++|..+||+||+++++|+|+|.++
T Consensus 292 V~ll~e~~-g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd 370 (476)
T KOG0330|consen 292 VYLLNELA-GNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVD 370 (476)
T ss_pred HHHHHhhc-CCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCce
Confidence 99998754 57899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCChhhhhhcccccCCCCCCceEEEEecCCChHHHHHHHHHHHHhCC
Q 013176 343 CVVNYDFPTSLEDYVHRIGRTGRAGARGTAFTFFTHSNAKFARDLIKILQEAGQ 396 (448)
Q Consensus 343 ~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~ 396 (448)
+||+||.|.+..+|+||+||++|.|.+|.++.+++..|.+.+.+|...+.+...
T Consensus 371 ~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl~ 424 (476)
T KOG0330|consen 371 VVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKLP 424 (476)
T ss_pred EEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999999988888887776654
No 7
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.6e-64 Score=442.92 Aligned_cols=411 Identities=47% Similarity=0.810 Sum_probs=379.3
Q ss_pred CCHHHHHHHHh-cCCeEEe----c--CCCCCccccccc-CCCCHHHHHHHHHCCCCCCcHHHHhHHHHhhcCCcEEEEcC
Q 013176 1 MTETEVKMYRA-RREITVE----G--HDVPRPIRIFQE-ANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAE 72 (448)
Q Consensus 1 ~~~~~~~~~~~-~~~~~~~----~--~~~~~p~~~~~~-~~l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~ 72 (448)
|+.++++.|.. .+.+.++ | +++|.|..+|++ +...+++.+.+++.||..|+|+|.+|+|.+++|.+++.++.
T Consensus 186 ls~~q~~~~r~en~~it~dd~K~gekrpIPnP~ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQ 265 (629)
T KOG0336|consen 186 LSKEQLQEWRKENFNITCDDLKEGEKRPIPNPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQ 265 (629)
T ss_pred CCHHHHHHHHHcCCcEEecccccCCcccCCCCcCcHHHHHhhhHHHHHHHHhccCCCCCcchhcccceeecCcceEEEEe
Confidence 56666666654 4455553 2 889999999999 78899999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHhhcCCC-ccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHHHHhcCC
Q 013176 73 TGSGKTLSYLLPAFVHVSAQPR-LVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGV 151 (448)
Q Consensus 73 tGsGKT~~~~l~~l~~~~~~~~-~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (448)
||+|||++|++|.+.++..++. .....++.+|++.||++|+.|+.-++.++.- .+++.+|++|+.+..++...++.+.
T Consensus 266 TgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kysy-ng~ksvc~ygggnR~eqie~lkrgv 344 (629)
T KOG0336|consen 266 TGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYSY-NGLKSVCVYGGGNRNEQIEDLKRGV 344 (629)
T ss_pred cCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhhh-cCcceEEEecCCCchhHHHHHhcCc
Confidence 9999999999999988766543 2334578999999999999999998888753 4789999999999999999999999
Q ss_pred cEEEEccHHHHHHHHccccCCCCccEEEEecccccccCCCHHHHHHHHHHcCCCcceEEEeccCchHHHHHHHHHcCCCe
Q 013176 152 EIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPY 231 (448)
Q Consensus 152 ~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~ 231 (448)
+|+++||.+|.++...+..++.++.++|+|||++|++++|...+++++-.+++++|.++.|||+|+.+..++..++.+|.
T Consensus 345 eiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~ 424 (629)
T KOG0336|consen 345 EIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPM 424 (629)
T ss_pred eEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCcccccccCcceEEEEecchhHHHHHHHHHHhhhcCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHH
Q 013176 232 KVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSER 311 (448)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r 311 (448)
.+.....+...-..+.+.+.+..+.+++..+..+++......|+||||.++..|..+...|--.++.+..+||+..+.+|
T Consensus 425 ~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~Dr 504 (629)
T KOG0336|consen 425 IVYVGSLDLVAVKSVKQNIIVTTDSEKLEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDR 504 (629)
T ss_pred EEEecccceeeeeeeeeeEEecccHHHHHHHHHHHHhcCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhH
Confidence 99999998888888999998888999998888889888889999999999999999999888889999999999999999
Q ss_pred HHHHHHHhcCCCCEEEEeccccCCCCCCCccEEEEcCCCCChhhhhhcccccCCCCCCceEEEEecCCChHHHHHHHHHH
Q 013176 312 DWVLAEFRSGRSPIMTATDVAARGLDVKDIKCVVNYDFPTSLEDYVHRIGRTGRAGARGTAFTFFTHSNAKFARDLIKIL 391 (448)
Q Consensus 312 ~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~ 391 (448)
+..++.|++|+++|||||+++++|+|+|++.||++||+|.+.+.|.||+||+||.|+.|.+++|+..++..+...|++++
T Consensus 505 E~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~IL 584 (629)
T KOG0336|consen 505 EMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELIQIL 584 (629)
T ss_pred HHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcceEEEEehhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCcHHHHhhhhhcCCC
Q 013176 392 QEAGQIVSPALSGLARSAAPS 412 (448)
Q Consensus 392 ~~~~~~~~~~l~~~~~~~~~~ 412 (448)
+++.|.+|+.|..|++...-.
T Consensus 585 e~aeQevPdeL~~mAeryk~~ 605 (629)
T KOG0336|consen 585 ERAEQEVPDELVRMAERYKLK 605 (629)
T ss_pred HHhhhhCcHHHHHHHHHHHhh
Confidence 999999999999998765433
No 8
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=4.9e-64 Score=454.96 Aligned_cols=401 Identities=47% Similarity=0.768 Sum_probs=369.7
Q ss_pred CCHHHHHHHHhcCCeEEecCCCCCcccccccCCCCHHHHHHHHHCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHH
Q 013176 1 MTETEVKMYRARREITVEGHDVPRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLS 80 (448)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~ 80 (448)
|++++-+-|.+..++.+.|..+|.|+++|++.+||.++++.+...||.+|+|+|+.++|..++++|+|.++.||||||.+
T Consensus 219 m~~rdwri~redynis~kg~~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaa 298 (673)
T KOG0333|consen 219 MTERDWRIFREDYNISIKGGRLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAA 298 (673)
T ss_pred cCCccceeeecceeeeecCCCCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCcccc
Confidence 66777788888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCccC----CCCceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHHHHhcCCcEEEE
Q 013176 81 YLLPAFVHVSAQPRLVQ----GEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIA 156 (448)
Q Consensus 81 ~~l~~l~~~~~~~~~~~----~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~ 156 (448)
|++|++..+...+...+ ..++..+++.||++|++|+.++-.+|++.++++++.+.|+.+.+++--.+..+|+|+|+
T Consensus 299 f~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceivia 378 (673)
T KOG0333|consen 299 FLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIA 378 (673)
T ss_pred chhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeec
Confidence 99999998876553222 34899999999999999999999999999999999999999999998899999999999
Q ss_pred ccHHHHHHHHccccCCCCccEEEEecccccccCCCHHHHHHHHHHcCC-------------------------CcceEEE
Q 013176 157 TPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRP-------------------------DRQTLYW 211 (448)
Q Consensus 157 T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~-------------------------~~~~v~~ 211 (448)
||..|.+.+.+..+.+.++.++|+|||++|.+++|.+.+..++..++. ..|.+.|
T Consensus 379 tPgrLid~Lenr~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mf 458 (673)
T KOG0333|consen 379 TPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMF 458 (673)
T ss_pred CchHHHHHHHHHHHHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEE
Confidence 999999999999999999999999999999999999999999988752 1478999
Q ss_pred eccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceEEEEecchhHHHHHHHHHHhhhcCCcEEEEecchhHHHHHHHH
Q 013176 212 SATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQ 291 (448)
Q Consensus 212 SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~k~lVf~~~~~~~~~l~~~ 291 (448)
|||+++.++.+++.++.+|..+.+.... .....+.|.+...+.+.+...|.+++++. ...++|||+|+++.|+.+++.
T Consensus 459 tatm~p~verlar~ylr~pv~vtig~~g-k~~~rveQ~v~m~~ed~k~kkL~eil~~~-~~ppiIIFvN~kk~~d~lAk~ 536 (673)
T KOG0333|consen 459 TATMPPAVERLARSYLRRPVVVTIGSAG-KPTPRVEQKVEMVSEDEKRKKLIEILESN-FDPPIIIFVNTKKGADALAKI 536 (673)
T ss_pred ecCCChHHHHHHHHHhhCCeEEEeccCC-CCccchheEEEEecchHHHHHHHHHHHhC-CCCCEEEEEechhhHHHHHHH
Confidence 9999999999999999999999998776 45556888888889999999999999886 456899999999999999999
Q ss_pred HHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCCCccEEEEcCCCCChhhhhhcccccCCCCCCce
Q 013176 292 LRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVKDIKCVVNYDFPTSLEDYVHRIGRTGRAGARGT 371 (448)
Q Consensus 292 L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~ 371 (448)
|.+.++++..|||+.++++|+.+++.|++|..+|||||+++++|||+|++++||+||++.++.+|+||+||+||.|+.|.
T Consensus 537 LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~Gt 616 (673)
T KOG0333|consen 537 LEKAGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGT 616 (673)
T ss_pred HhhccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCChHHHHHHHHHHHHh-CCCCcHHHH
Q 013176 372 AFTFFTHSNAKFARDLIKILQEA-GQIVSPALS 403 (448)
Q Consensus 372 ~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~l~ 403 (448)
+++|+++.+...+..|...+.+. ....|+.+.
T Consensus 617 aiSflt~~dt~v~ydLkq~l~es~~s~~P~Ela 649 (673)
T KOG0333|consen 617 AISFLTPADTAVFYDLKQALRESVKSHCPPELA 649 (673)
T ss_pred eEEEeccchhHHHHHHHHHHHHhhhccCChhhc
Confidence 99999999999888888887744 444555553
No 9
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=7.3e-62 Score=480.41 Aligned_cols=368 Identities=39% Similarity=0.612 Sum_probs=320.6
Q ss_pred CCcccccccCCCCHHHHHHHHHCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCc--cCCCC
Q 013176 23 PRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRL--VQGEG 100 (448)
Q Consensus 23 ~~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~--~~~~~ 100 (448)
|....+|++++|++.+++.+.++||..|+|+|.++|+.+++++|+++.+|||||||++|++|++..+...... .....
T Consensus 5 ~~~~~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~ 84 (572)
T PRK04537 5 PLTDLTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPED 84 (572)
T ss_pred ccCCCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCC
Confidence 3344579999999999999999999999999999999999999999999999999999999999987653211 11235
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHcc-ccCCCCccEEE
Q 013176 101 PIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQ-HTNLRRVTYLV 179 (448)
Q Consensus 101 ~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~-~~~~~~~~~iI 179 (448)
+++|||+||++|+.|+.+.+.++....++++..++|+.....+...+..+++|+|+||++|++++... ...+..+++||
T Consensus 85 ~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lV 164 (572)
T PRK04537 85 PRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICV 164 (572)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeE
Confidence 78999999999999999999999988899999999999887777777788999999999999988765 35678899999
Q ss_pred EecccccccCCCHHHHHHHHHHcCC--CcceEEEeccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceEEEEecchh
Q 013176 180 LDEADRMLDMGFEPQIRKIVTQIRP--DRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAE 257 (448)
Q Consensus 180 vDE~h~~~~~~~~~~~~~~~~~~~~--~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (448)
|||||++++++|...+..++..++. ..|++++|||++..+..+...++.++..+...... .....+.+.+.......
T Consensus 165 iDEAh~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~-~~~~~i~q~~~~~~~~~ 243 (572)
T PRK04537 165 LDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETET-ITAARVRQRIYFPADEE 243 (572)
T ss_pred ecCHHHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEecccc-ccccceeEEEEecCHHH
Confidence 9999999999999999999888875 67999999999999888888888887766554333 22334455555566667
Q ss_pred HHHHHHHHHHhhhcCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCC
Q 013176 258 KYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLD 337 (448)
Q Consensus 258 ~~~~l~~~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gid 337 (448)
+...+..++.. ..+.++||||+++..++.+++.|.+.++.+..+|++++..+|..+++.|++|+.+|||||+++++|||
T Consensus 244 k~~~L~~ll~~-~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGID 322 (572)
T PRK04537 244 KQTLLLGLLSR-SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLH 322 (572)
T ss_pred HHHHHHHHHhc-ccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCC
Confidence 77777777654 34678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccEEEEcCCCCChhhhhhcccccCCCCCCceEEEEecCCChHHHHHHHHHHH
Q 013176 338 VKDIKCVVNYDFPTSLEDYVHRIGRTGRAGARGTAFTFFTHSNAKFARDLIKILQ 392 (448)
Q Consensus 338 i~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~ 392 (448)
+|++++||+||.|.+..+|+||+||+||.|..|.+++|+.+.+...+..+.+.+.
T Consensus 323 ip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~ 377 (572)
T PRK04537 323 IDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIE 377 (572)
T ss_pred ccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999887777777766543
No 10
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=4.4e-60 Score=457.52 Aligned_cols=370 Identities=37% Similarity=0.568 Sum_probs=324.4
Q ss_pred CCcccccccCCCCHHHHHHHHHCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCc--cCCCC
Q 013176 23 PRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRL--VQGEG 100 (448)
Q Consensus 23 ~~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~--~~~~~ 100 (448)
+-+..+|+++++++.+.++++.+||..|+|+|+++++.++.++|+++++|||||||++|++|++..+...... ....+
T Consensus 4 ~~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~ 83 (423)
T PRK04837 4 HLTEQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQ 83 (423)
T ss_pred cCCCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCC
Confidence 3445789999999999999999999999999999999999999999999999999999999999988654321 11236
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEE
Q 013176 101 PIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVL 180 (448)
Q Consensus 101 ~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIv 180 (448)
+++||++||++|+.|+.+.+..+....++++..++|+.....+...+..+++|+|+||++|.+++......+.+++++|+
T Consensus 84 ~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lVi 163 (423)
T PRK04837 84 PRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVL 163 (423)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEE
Confidence 78999999999999999999999988899999999998887777788888999999999999999888888999999999
Q ss_pred ecccccccCCCHHHHHHHHHHcCC--CcceEEEeccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceEEEEecchhH
Q 013176 181 DEADRMLDMGFEPQIRKIVTQIRP--DRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEK 258 (448)
Q Consensus 181 DE~h~~~~~~~~~~~~~~~~~~~~--~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (448)
||||++++++|...+..++..++. ..+.+++|||++..+..+....+.++..+.+.... .....+.+.........+
T Consensus 164 DEad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~-~~~~~i~~~~~~~~~~~k 242 (423)
T PRK04837 164 DEADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQ-KTGHRIKEELFYPSNEEK 242 (423)
T ss_pred ecHHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCC-cCCCceeEEEEeCCHHHH
Confidence 999999999999999999888864 44578999999999988888888888777654433 233345555555566777
Q ss_pred HHHHHHHHHhhhcCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCC
Q 013176 259 YNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDV 338 (448)
Q Consensus 259 ~~~l~~~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi 338 (448)
...+..++... ...++||||+++..|+.+++.|...++++..+||+++.++|..+++.|++|+++|||||+++++|+|+
T Consensus 243 ~~~l~~ll~~~-~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDi 321 (423)
T PRK04837 243 MRLLQTLIEEE-WPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHI 321 (423)
T ss_pred HHHHHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCc
Confidence 77777777653 35689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEcCCCCChhhhhhcccccCCCCCCceEEEEecCCChHHHHHHHHHHHHh
Q 013176 339 KDIKCVVNYDFPTSLEDYVHRIGRTGRAGARGTAFTFFTHSNAKFARDLIKILQEA 394 (448)
Q Consensus 339 ~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~ 394 (448)
|++++||+||+|.++.+|+||+||+||.|+.|.+++|+.+.+......+.+.+...
T Consensus 322 p~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~~ 377 (423)
T PRK04837 322 PAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHS 377 (423)
T ss_pred cccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999998887777776655433
No 11
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.1e-60 Score=464.04 Aligned_cols=364 Identities=45% Similarity=0.734 Sum_probs=331.9
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEE
Q 013176 27 RIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVL 106 (448)
Q Consensus 27 ~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil 106 (448)
.+|+++++++.+.+.+.++||..|+|+|..++|.++.++|+++.++||||||++|.+|+++.+..... . ....+||+
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~--~-~~~~aLil 105 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVE--R-KYVSALIL 105 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccc--c-CCCceEEE
Confidence 78999999999999999999999999999999999999999999999999999999999999774311 0 11119999
Q ss_pred cCcHHHHHHHHHHHHHhhcCC-CceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccc
Q 013176 107 APTRELAVQIQEEALKFGSRA-GIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADR 185 (448)
Q Consensus 107 ~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~ 185 (448)
+||++||.|+.+.+..+.... ++++..++|+.+...+...+..+++|+|+||+++++++....+++..+.++|+||||+
T Consensus 106 ~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADr 185 (513)
T COG0513 106 APTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADR 185 (513)
T ss_pred CCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhh
Confidence 999999999999999999988 7999999999999999988888899999999999999999999999999999999999
Q ss_pred cccCCCHHHHHHHHHHcCCCcceEEEeccCchHHHHHHHHHcCCCeEEEeCCccc-ccccCcceEEEEecchh-HHHHHH
Q 013176 186 MLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLEL-KANQSINQVVEVVTEAE-KYNRLI 263 (448)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~l~ 263 (448)
|++++|...+..++..++++.|.+++|||++..+..+...++.+|..+.+..... .....+.+.+..+...+ |...|.
T Consensus 186 mLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~ 265 (513)
T COG0513 186 MLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLL 265 (513)
T ss_pred hhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998777663322 25667788877777665 888888
Q ss_pred HHHHhhhcCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCCCccE
Q 013176 264 KLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVKDIKC 343 (448)
Q Consensus 264 ~~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~ 343 (448)
.+++..... ++||||+++..++.++..|...++++..+||++++++|..+++.|++|+.+|||||+++++|||+|++++
T Consensus 266 ~ll~~~~~~-~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~ 344 (513)
T COG0513 266 KLLKDEDEG-RVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSH 344 (513)
T ss_pred HHHhcCCCC-eEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccce
Confidence 888764443 6999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCChhhhhhcccccCCCCCCceEEEEecCC-ChHHHHHHHHHHHHh
Q 013176 344 VVNYDFPTSLEDYVHRIGRTGRAGARGTAFTFFTHS-NAKFARDLIKILQEA 394 (448)
Q Consensus 344 Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~-~~~~~~~l~~~~~~~ 394 (448)
||+||+|.+++.|+||+||+||.|..|.+++|+.+. +...+..+.+.+...
T Consensus 345 VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~ 396 (513)
T COG0513 345 VINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERK 396 (513)
T ss_pred eEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999986 788888887776544
No 12
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.2e-61 Score=441.87 Aligned_cols=393 Identities=46% Similarity=0.754 Sum_probs=359.2
Q ss_pred CeEEecCCCCCcccccccCCCCHHHHHHHHHCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCC
Q 013176 14 EITVEGHDVPRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQP 93 (448)
Q Consensus 14 ~~~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~ 93 (448)
.+++.|..+|.++..|.+..+++.+...++..+|..|+|+|+.+++.+..+++++++|+||+|||.+|++|++.++....
T Consensus 61 ~v~~~G~~~p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~ 140 (482)
T KOG0335|consen 61 PVKVSGRDVPPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEG 140 (482)
T ss_pred eeeccCCccCCCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcC
Confidence 34557999999999999999999999999999999999999999999999999999999999999999999999987653
Q ss_pred CccCC-----CCceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHcc
Q 013176 94 RLVQG-----EGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQ 168 (448)
Q Consensus 94 ~~~~~-----~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~ 168 (448)
....+ ..+.++|++||++|+.|++.+.+++.....+++...+++.+...+.+....+|+|+|+||++|.++++..
T Consensus 141 ~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g 220 (482)
T KOG0335|consen 141 PEDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERG 220 (482)
T ss_pred cccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcc
Confidence 32111 2489999999999999999999999888899999999999999999999999999999999999999999
Q ss_pred ccCCCCccEEEEeccccccc-CCCHHHHHHHHHHcC----CCcceEEEeccCchHHHHHHHHHcCC-CeEEEeCCccccc
Q 013176 169 HTNLRRVTYLVLDEADRMLD-MGFEPQIRKIVTQIR----PDRQTLYWSATWPREVETLARQFLRN-PYKVIIGSLELKA 242 (448)
Q Consensus 169 ~~~~~~~~~iIvDE~h~~~~-~~~~~~~~~~~~~~~----~~~~~v~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 242 (448)
+..+.++.++|+|||++|++ ++|.+.++.++.... ...|.++||||++..+..++..++.+ +..+.+... ...
T Consensus 221 ~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rv-g~~ 299 (482)
T KOG0335|consen 221 KISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRV-GST 299 (482)
T ss_pred eeehhhCcEEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeee-ccc
Confidence 99999999999999999999 999999999988775 36789999999999999988888887 444444443 366
Q ss_pred ccCcceEEEEecchhHHHHHHHHHHhhh---cCC-----cEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHH
Q 013176 243 NQSINQVVEVVTEAEKYNRLIKLLKEVM---DGS-----RILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWV 314 (448)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~-----k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~ 314 (448)
...+.+-+..+.+.++...|+++|.... ... +++|||.+++.|..++..|...+++...+|++.++.+|.+.
T Consensus 300 ~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~a 379 (482)
T KOG0335|consen 300 SENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQA 379 (482)
T ss_pred cccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHH
Confidence 6678888888899999999999987554 223 89999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCEEEEeccccCCCCCCCccEEEEcCCCCChhhhhhcccccCCCCCCceEEEEecCCChHHHHHHHHHHHHh
Q 013176 315 LAEFRSGRSPIMTATDVAARGLDVKDIKCVVNYDFPTSLEDYVHRIGRTGRAGARGTAFTFFTHSNAKFARDLIKILQEA 394 (448)
Q Consensus 315 ~~~f~~g~~~vLv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~ 394 (448)
++.|++|.+.+||||+++++|+|+|++++||+||+|.+..+|+||+||+||.|+.|.++.|++..+....+.|.+++.++
T Consensus 380 l~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~~l~ea 459 (482)
T KOG0335|consen 380 LNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVEILTEA 459 (482)
T ss_pred HHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcHHHHhhhh
Q 013176 395 GQIVSPALSGLAR 407 (448)
Q Consensus 395 ~~~~~~~l~~~~~ 407 (448)
++.+|++|..+..
T Consensus 460 ~q~vP~wl~~~~~ 472 (482)
T KOG0335|consen 460 NQEVPQWLSELSR 472 (482)
T ss_pred cccCcHHHHhhhh
Confidence 9999999998554
No 13
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.7e-61 Score=404.30 Aligned_cols=386 Identities=34% Similarity=0.567 Sum_probs=351.1
Q ss_pred hcCCeEEecCCCCCcccccccCCCCHHHHHHHHHCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhh
Q 013176 11 ARREITVEGHDVPRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVS 90 (448)
Q Consensus 11 ~~~~~~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~ 90 (448)
....+..+.+.--.+..+|++.++.+++++.++++||..|+.+|+.|++.+++++++++.+..|+|||.+|.+.+++.+.
T Consensus 11 ~~~~~~feTs~~~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d 90 (400)
T KOG0328|consen 11 DMDTVEFETSEKVKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLD 90 (400)
T ss_pred cccceeEeeccCcccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecc
Confidence 34556667777778889999999999999999999999999999999999999999999999999999999888887765
Q ss_pred cCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHcccc
Q 013176 91 AQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHT 170 (448)
Q Consensus 91 ~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~ 170 (448)
-..+ ..+++++.||++|+.|+.+.+..++...++.+....|+.+..++...+..+.+++.+||+++++.+++..+
T Consensus 91 ~~~r-----~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L 165 (400)
T KOG0328|consen 91 ISVR-----ETQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSL 165 (400)
T ss_pred cccc-----eeeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccc
Confidence 5432 46799999999999999999999999999999999999999999999989999999999999999999999
Q ss_pred CCCCccEEEEecccccccCCCHHHHHHHHHHcCCCcceEEEeccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceEE
Q 013176 171 NLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVV 250 (448)
Q Consensus 171 ~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (448)
..+.+.++|+||++.+++.+|...+..+.+.++++.|++++|||+|.++.++...+..+|..+.....+......-..++
T Consensus 166 ~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v 245 (400)
T KOG0328|consen 166 RTRAVKMLVLDEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFV 245 (400)
T ss_pred cccceeEEEeccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhhee
Confidence 99999999999999999999999999999999999999999999999999999999999999988877755444434445
Q ss_pred EEecchhHHHHHHHHHHhhhcCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEec
Q 013176 251 EVVTEAEKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD 330 (448)
Q Consensus 251 ~~~~~~~~~~~l~~~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~ 330 (448)
....++-|++.|.++.....- .+.+|||||+..+..+.+.+++.++.+..+||+|++++|.+++.+|++|+.+||++|+
T Consensus 246 ~ve~EewKfdtLcdLYd~LtI-tQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTD 324 (400)
T KOG0328|consen 246 AVEKEEWKFDTLCDLYDTLTI-TQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTD 324 (400)
T ss_pred eechhhhhHhHHHHHhhhheh-heEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEec
Confidence 555556699999988876443 3689999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCccEEEEcCCCCChhhhhhcccccCCCCCCceEEEEecCCChHHHHHHHHHHHHhCCCCcHHH
Q 013176 331 VAARGLDVKDIKCVVNYDFPTSLEDYVHRIGRTGRAGARGTAFTFFTHSNAKFARDLIKILQEAGQIVSPAL 402 (448)
Q Consensus 331 ~~~~Gidi~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l 402 (448)
+.++|+|+|.+++||+||+|.+.+.|+||+||.||.|+.|.++-|+...+.+.++.+.+++.-.....|..+
T Consensus 325 VwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i~emp~nv 396 (400)
T KOG0328|consen 325 VWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQIDEMPMNV 396 (400)
T ss_pred hhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhcccccchh
Confidence 999999999999999999999999999999999999999999999999999999999998877766666544
No 14
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=2.9e-59 Score=456.65 Aligned_cols=358 Identities=39% Similarity=0.623 Sum_probs=323.3
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEE
Q 013176 27 RIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVL 106 (448)
Q Consensus 27 ~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil 106 (448)
.+|+++++++.+.+.+..+||..|+|+|+++++.+++++|+++++|||+|||++|++|++..+.... ...+++|+
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~-----~~~~~lil 78 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKR-----FRVQALVL 78 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhcc-----CCceEEEE
Confidence 5799999999999999999999999999999999999999999999999999999999999875432 25579999
Q ss_pred cCcHHHHHHHHHHHHHhhcCC-CceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccc
Q 013176 107 APTRELAVQIQEEALKFGSRA-GIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADR 185 (448)
Q Consensus 107 ~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~ 185 (448)
+||++|+.|+.+.++.+.... ++++..++|+.+...+...+..+++|+|+||++|.+++.+....+.++++||+||||+
T Consensus 79 ~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~ 158 (460)
T PRK11776 79 CPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADR 158 (460)
T ss_pred eCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHH
Confidence 999999999999999987644 6889999999998888888888999999999999999998888899999999999999
Q ss_pred cccCCCHHHHHHHHHHcCCCcceEEEeccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceEEEEecchhHHHHHHHH
Q 013176 186 MLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKL 265 (448)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 265 (448)
+++++|...+..++..+++..|++++|||+++.+..+...++.++..+...... ....+.+.+.......+...+..+
T Consensus 159 ~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~--~~~~i~~~~~~~~~~~k~~~l~~l 236 (460)
T PRK11776 159 MLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH--DLPAIEQRFYEVSPDERLPALQRL 236 (460)
T ss_pred HhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC--CCCCeeEEEEEeCcHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999888887765443 233456666666677788888888
Q ss_pred HHhhhcCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCCCccEEE
Q 013176 266 LKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVKDIKCVV 345 (448)
Q Consensus 266 l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~Vi 345 (448)
+... ...++||||++++.++.+++.|.+.++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||
T Consensus 237 l~~~-~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI 315 (460)
T PRK11776 237 LLHH-QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVI 315 (460)
T ss_pred HHhc-CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEE
Confidence 7653 356899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCChhhhhhcccccCCCCCCceEEEEecCCChHHHHHHHHHHH
Q 013176 346 NYDFPTSLEDYVHRIGRTGRAGARGTAFTFFTHSNAKFARDLIKILQ 392 (448)
Q Consensus 346 ~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~ 392 (448)
++|+|.++.+|+||+||+||.|..|.+++|+.+.+......+.+.+.
T Consensus 316 ~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~ 362 (460)
T PRK11776 316 NYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLG 362 (460)
T ss_pred EecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999988777777766553
No 15
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.9e-60 Score=466.56 Aligned_cols=406 Identities=48% Similarity=0.820 Sum_probs=383.1
Q ss_pred CCHHHHHHHHhcCC-eEEecCCCCCcccccccCCCCHHHHHHHHHCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHH
Q 013176 1 MTETEVKMYRARRE-ITVEGHDVPRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTL 79 (448)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~ 79 (448)
|+..+++.|..-.+ +.++|...|+|+++|.+.+++..++..++++||..|+|+|.+|||+++.|+++|.++.||||||+
T Consensus 338 ms~~eV~~yr~~l~~i~v~g~~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~ 417 (997)
T KOG0334|consen 338 MSAAEVDEYRCELDGIKVKGKECPKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTL 417 (997)
T ss_pred HHHHHHHHhhcCccceeeccCCCCcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccch
Confidence 56788999988888 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccH
Q 013176 80 SYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPG 159 (448)
Q Consensus 80 ~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~ 159 (448)
+|++|++.+...++....+.+|.++|++||++|+.|+.+++++|+..+++++++++|+....+++..++.++.|+||||+
T Consensus 418 af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpG 497 (997)
T KOG0334|consen 418 AFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPG 497 (997)
T ss_pred hhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccc
Confidence 99999999999999888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccccCC---CCccEEEEecccccccCCCHHHHHHHHHHcCCCcceEEEeccCchHHHHHHHHHcCCCeEEEeC
Q 013176 160 RLIDMLEAQHTNL---RRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIG 236 (448)
Q Consensus 160 ~l~~~~~~~~~~~---~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~ 236 (448)
++++.+-.+...+ .+..++|+||+|++.+++|.+.+..|+..+++.+|.+++|||++..++.++...+..|..+.+.
T Consensus 498 RmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~ 577 (997)
T KOG0334|consen 498 RMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVG 577 (997)
T ss_pred hhhhhHhhcCCccccccccceeeechhhhhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEc
Confidence 9999887665544 4455999999999999999999999999999999999999999999999999999988886655
Q ss_pred CcccccccCcceEEEEec-chhHHHHHHHHHHhhhcCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHH
Q 013176 237 SLELKANQSINQVVEVVT-EAEKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVL 315 (448)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~ 315 (448)
........+.+.+.++. +++|+..|.++|.+..+..++||||.+.+.|..+.+.|.+.++++..+||+.++.+|..++
T Consensus 578 -~~svV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti 656 (997)
T KOG0334|consen 578 -GRSVVCKEVTQVVRVCAIENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTI 656 (997)
T ss_pred -cceeEeccceEEEEEecCchHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHH
Confidence 45566777888888888 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCEEEEeccccCCCCCCCccEEEEcCCCCChhhhhhcccccCCCCCCceEEEEecCCChHHHHHHHHHHHHhC
Q 013176 316 AEFRSGRSPIMTATDVAARGLDVKDIKCVVNYDFPTSLEDYVHRIGRTGRAGARGTAFTFFTHSNAKFARDLIKILQEAG 395 (448)
Q Consensus 316 ~~f~~g~~~vLv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~ 395 (448)
+.|+++.+++||+|+++++|+|++.+.+||+||+|..+++|.||+||+||.|..|.+++|+.+.+.++...|.+.+....
T Consensus 657 ~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al~~~~ 736 (997)
T KOG0334|consen 657 EDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKALELSK 736 (997)
T ss_pred HHHhccCceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHhhhh
Q 013176 396 QIVSPALSGLAR 407 (448)
Q Consensus 396 ~~~~~~l~~~~~ 407 (448)
+++|..+..|..
T Consensus 737 ~~~P~~l~~l~~ 748 (997)
T KOG0334|consen 737 QPVPKLLQALSE 748 (997)
T ss_pred CCCchHHHHHHH
Confidence 999988877754
No 16
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=1.1e-61 Score=424.43 Aligned_cols=428 Identities=43% Similarity=0.697 Sum_probs=375.2
Q ss_pred CCHHHHHHHHhcCCeEEecCCCCCcccccccCCCCHHHHHHHHHCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHH
Q 013176 1 MTETEVKMYRARREITVEGHDVPRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLS 80 (448)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~ 80 (448)
||.++-+.-..+-.+.+.|..+|.|+++|.+..+|..+++.+++.|+..|+|+|.+-+|.+++|++.+-.+-||||||++
T Consensus 144 mS~e~~e~vRk~~~I~veGd~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlv 223 (610)
T KOG0341|consen 144 MSEEQRELVRKQLHILVEGDDIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLV 223 (610)
T ss_pred hhHHHHHHHHHhheEEeeCCCCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEE
Confidence 67777777788888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcC---CCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCC------CceEEEEEcCCCchHhHHHHhcCC
Q 013176 81 YLLPAFVHVSAQ---PRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRA------GIRSTCIYGGAPKGPQIRDLRRGV 151 (448)
Q Consensus 81 ~~l~~l~~~~~~---~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 151 (448)
|++|++....++ ....++.++..||+||+++|+.|+.+.+..|...+ .++.....|+.+..++...++.+.
T Consensus 224 FvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~Gv 303 (610)
T KOG0341|consen 224 FVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGV 303 (610)
T ss_pred EeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCe
Confidence 999988765443 23456679999999999999999999988875443 367777889999999999999999
Q ss_pred cEEEEccHHHHHHHHccccCCCCccEEEEecccccccCCCHHHHHHHHHHcCCCcceEEEeccCchHHHHHHHHHcCCCe
Q 013176 152 EIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPY 231 (448)
Q Consensus 152 ~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~ 231 (448)
+|+|+||++|.+.+..+..++.-+.++.+||++++.+++|...++.++..+...+|.+++|||+|..++.+++.-+-.|.
T Consensus 304 HivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPv 383 (610)
T KOG0341|consen 304 HIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPV 383 (610)
T ss_pred eEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccce
Confidence 99999999999999999889988999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCcccccccCcceEEEEecchhHHHHHHHHHHhhhcCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHH
Q 013176 232 KVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSER 311 (448)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r 311 (448)
.+.+........ .+.+.+.+...+.|+--+++-|++ ...++||||..+.++..+.++|--.|..++.+||+.++++|
T Consensus 384 tvNVGRAGAAsl-dViQevEyVkqEaKiVylLeCLQK--T~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR 460 (610)
T KOG0341|consen 384 TVNVGRAGAASL-DVIQEVEYVKQEAKIVYLLECLQK--TSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDR 460 (610)
T ss_pred EEecccccccch-hHHHHHHHHHhhhhhhhHHHHhcc--CCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHH
Confidence 998877653333 334444445555565555665554 24589999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCEEEEeccccCCCCCCCccEEEEcCCCCChhhhhhcccccCCCCCCceEEEEecCC-ChHHHHHHHHH
Q 013176 312 DWVLAEFRSGRSPIMTATDVAARGLDVKDIKCVVNYDFPTSLEDYVHRIGRTGRAGARGTAFTFFTHS-NAKFARDLIKI 390 (448)
Q Consensus 312 ~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~-~~~~~~~l~~~ 390 (448)
...++.|+.|+.+|||||++++.|+|+|++.|||+||.|...+.|.||+||+||.|+.|.+.+|+.++ +...+-++...
T Consensus 461 ~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~~esvLlDLK~L 540 (610)
T KOG0341|consen 461 HYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQEESVLLDLKHL 540 (610)
T ss_pred HHHHHHHhcCCCceEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999876 56677889999
Q ss_pred HHHhCCCCcHHHHhhhhhcCC-CCCCCCCCCCCCCCCCCCCC
Q 013176 391 LQEAGQIVSPALSGLARSAAP-SFGGSGGNFRSRGRGGFGIR 431 (448)
Q Consensus 391 ~~~~~~~~~~~l~~~~~~~~~-~~~~~g~~~~~~g~g~~g~~ 431 (448)
+.+..+.+|+.|..++..-.. ..-+.||.-|..++||.|++
T Consensus 541 L~EakQ~vP~~L~~L~~~~E~~~~a~~~~~kGCayCgGLGHR 582 (610)
T KOG0341|consen 541 LQEAKQEVPPVLAELAGPMEEETIADAGGEKGCAYCGGLGHR 582 (610)
T ss_pred HHHhhccCCHHHHHhCCCccccccccCCCccccccccCCCcc
Confidence 999999999999888643332 33444555567777777654
No 17
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=3.5e-58 Score=446.54 Aligned_cols=365 Identities=35% Similarity=0.585 Sum_probs=319.3
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEE
Q 013176 27 RIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVL 106 (448)
Q Consensus 27 ~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil 106 (448)
++|+++++++.+.+.+..+||..|+++|.++++.++.++++++++|||+|||++|++|++.++..... ......+++|+
T Consensus 1 ~~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~-~~~~~~~~lil 79 (434)
T PRK11192 1 TTFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPR-RKSGPPRILIL 79 (434)
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccc-cCCCCceEEEE
Confidence 36999999999999999999999999999999999999999999999999999999999998865322 12235789999
Q ss_pred cCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEeccccc
Q 013176 107 APTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRM 186 (448)
Q Consensus 107 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~ 186 (448)
+||++|+.|+.+.+..+....++++..++|+.........+..+++|+|+||++|++++......+.++++|||||||++
T Consensus 80 ~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~ 159 (434)
T PRK11192 80 TPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRM 159 (434)
T ss_pred CCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHH
Confidence 99999999999999999988899999999999887777777788999999999999999888888899999999999999
Q ss_pred ccCCCHHHHHHHHHHcCCCcceEEEeccCch-HHHHHHHHHcCCCeEEEeCCcccccccCcceEEEEec-chhHHHHHHH
Q 013176 187 LDMGFEPQIRKIVTQIRPDRQTLYWSATWPR-EVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVT-EAEKYNRLIK 264 (448)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~ 264 (448)
++++|...+..+...++...|++++|||++. .+..+...++.++..+...... .....+.+++.... ...+...+..
T Consensus 160 l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~i~~~~~~~~~~~~k~~~l~~ 238 (434)
T PRK11192 160 LDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSR-RERKKIHQWYYRADDLEHKTALLCH 238 (434)
T ss_pred hCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCc-ccccCceEEEEEeCCHHHHHHHHHH
Confidence 9999999999999888888899999999975 4777777787777776654433 22334445544443 3455666666
Q ss_pred HHHhhhcCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCCCccEE
Q 013176 265 LLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVKDIKCV 344 (448)
Q Consensus 265 ~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~V 344 (448)
+++. ....++||||++++.++.+++.|++.++.+..+||+++..+|..+++.|++|+++|||||+++++|+|+|++++|
T Consensus 239 l~~~-~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~V 317 (434)
T PRK11192 239 LLKQ-PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHV 317 (434)
T ss_pred HHhc-CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEE
Confidence 6543 345689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCChhhhhhcccccCCCCCCceEEEEecCCChHHHHHHHHHHHHh
Q 013176 345 VNYDFPTSLEDYVHRIGRTGRAGARGTAFTFFTHSNAKFARDLIKILQEA 394 (448)
Q Consensus 345 i~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~ 394 (448)
|+||+|.+...|+||+||+||.|..|.+++++...+...+..+.+++.+.
T Consensus 318 I~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~~~ 367 (434)
T PRK11192 318 INFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIEEP 367 (434)
T ss_pred EEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999998888888887766543
No 18
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=1.5e-58 Score=459.13 Aligned_cols=355 Identities=41% Similarity=0.663 Sum_probs=316.4
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEE
Q 013176 26 IRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLV 105 (448)
Q Consensus 26 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vli 105 (448)
..+|++++|++.+++++.++||.+|+|+|.++++.+++++++++.+|||+|||++|.+|++..+.... ..+++||
T Consensus 5 ~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~-----~~~~~LI 79 (629)
T PRK11634 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPEL-----KAPQILV 79 (629)
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhcc-----CCCeEEE
Confidence 35699999999999999999999999999999999999999999999999999999999998875432 2578999
Q ss_pred EcCcHHHHHHHHHHHHHhhcCC-CceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEeccc
Q 013176 106 LAPTRELAVQIQEEALKFGSRA-GIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEAD 184 (448)
Q Consensus 106 l~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h 184 (448)
++||++|+.|+++.+..+.... ++.+..++++.+...+...+..+++|+|+||++|++++.+....++++++||+||||
T Consensus 80 L~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd 159 (629)
T PRK11634 80 LAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEAD 159 (629)
T ss_pred EeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHH
Confidence 9999999999999999887654 789999999998888888888889999999999999999888889999999999999
Q ss_pred ccccCCCHHHHHHHHHHcCCCcceEEEeccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceEEEEecchhHHHHHHH
Q 013176 185 RMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIK 264 (448)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 264 (448)
.+++++|...+..++..++...|++++|||++..+..+...++.++..+.+.... .....+.+.+.......+...+..
T Consensus 160 ~ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~-~~~~~i~q~~~~v~~~~k~~~L~~ 238 (629)
T PRK11634 160 EMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSV-TTRPDISQSYWTVWGMRKNEALVR 238 (629)
T ss_pred HHhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCcc-ccCCceEEEEEEechhhHHHHHHH
Confidence 9999999999999999999999999999999999999999999888877665443 233345555555666677788888
Q ss_pred HHHhhhcCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCCCccEE
Q 013176 265 LLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVKDIKCV 344 (448)
Q Consensus 265 ~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~V 344 (448)
++... ...++||||+++..+..+++.|.+.++.+..+|+++++.+|..+++.|++|+.+|||||+++++|||+|++++|
T Consensus 239 ~L~~~-~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~V 317 (629)
T PRK11634 239 FLEAE-DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLV 317 (629)
T ss_pred HHHhc-CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEE
Confidence 77653 34689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCChhhhhhcccccCCCCCCceEEEEecCCChHHHHHH
Q 013176 345 VNYDFPTSLEDYVHRIGRTGRAGARGTAFTFFTHSNAKFARDL 387 (448)
Q Consensus 345 i~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l 387 (448)
|+||+|.++.+|+||+||+||.|+.|.+++|+.+.+...++.+
T Consensus 318 I~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~i 360 (629)
T PRK11634 318 VNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360 (629)
T ss_pred EEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHH
Confidence 9999999999999999999999999999999987655444433
No 19
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.7e-56 Score=438.09 Aligned_cols=369 Identities=37% Similarity=0.573 Sum_probs=319.1
Q ss_pred CcccccccCCCCHHHHHHHHHCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCcc--CCCCc
Q 013176 24 RPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLV--QGEGP 101 (448)
Q Consensus 24 ~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~--~~~~~ 101 (448)
.....|.++++++.+.+++.++||..|+++|.++++.+++|+|+++.+|||||||++|++|++..+....... ....+
T Consensus 84 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~ 163 (475)
T PRK01297 84 EGKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEP 163 (475)
T ss_pred cCCCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCc
Confidence 3356788999999999999999999999999999999999999999999999999999999999886643211 11257
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHHHHh-cCCcEEEEccHHHHHHHHccccCCCCccEEEE
Q 013176 102 IVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLR-RGVEIVIATPGRLIDMLEAQHTNLRRVTYLVL 180 (448)
Q Consensus 102 ~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIv 180 (448)
++|||+||++|+.|+.+.++.+....++++..++|+.....+...+. ..++|+|+||++|+.+...+...+.++++|||
T Consensus 164 ~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lVi 243 (475)
T PRK01297 164 RALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVL 243 (475)
T ss_pred eEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEe
Confidence 89999999999999999999998888899999999877766666654 46899999999999988888888999999999
Q ss_pred ecccccccCCCHHHHHHHHHHcCC--CcceEEEeccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceEEEEecchhH
Q 013176 181 DEADRMLDMGFEPQIRKIVTQIRP--DRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEK 258 (448)
Q Consensus 181 DE~h~~~~~~~~~~~~~~~~~~~~--~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (448)
||+|.+.+.+|...+..++..++. ..|++++|||++.+...+...++.++..+.+.... .......+.+......++
T Consensus 244 DEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~k 322 (475)
T PRK01297 244 DEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPEN-VASDTVEQHVYAVAGSDK 322 (475)
T ss_pred chHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCc-CCCCcccEEEEEecchhH
Confidence 999999999998899999888753 56899999999999999998888888776654433 222334555555566677
Q ss_pred HHHHHHHHHhhhcCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCC
Q 013176 259 YNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDV 338 (448)
Q Consensus 259 ~~~l~~~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi 338 (448)
...+..++.. ....++||||++++.++.+++.|.+.++.+..+||+++.++|.++++.|++|++++||||+++++|||+
T Consensus 323 ~~~l~~ll~~-~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi 401 (475)
T PRK01297 323 YKLLYNLVTQ-NPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHI 401 (475)
T ss_pred HHHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcc
Confidence 7777777654 234689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEcCCCCChhhhhhcccccCCCCCCceEEEEecCCChHHHHHHHHHHHHh
Q 013176 339 KDIKCVVNYDFPTSLEDYVHRIGRTGRAGARGTAFTFFTHSNAKFARDLIKILQEA 394 (448)
Q Consensus 339 ~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~ 394 (448)
|++++||++++|.+..+|+||+||+||.|..|.+++|+.++|...+..+.+.+...
T Consensus 402 ~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~ 457 (475)
T PRK01297 402 DGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRK 457 (475)
T ss_pred cCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999988877777776666444
No 20
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-58 Score=416.76 Aligned_cols=362 Identities=36% Similarity=0.561 Sum_probs=327.2
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEE
Q 013176 27 RIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVL 106 (448)
Q Consensus 27 ~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil 106 (448)
.+|.+++|+-.+++++..+||..|+|+|..+||..+-+++++.+|.||||||.+|++|++.++.-++... ...+||||
T Consensus 181 ~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~--~~TRVLVL 258 (691)
T KOG0338|consen 181 ESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKV--AATRVLVL 258 (691)
T ss_pred hhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccC--cceeEEEE
Confidence 4889999999999999999999999999999999999999999999999999999999999998876542 36789999
Q ss_pred cCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHcc-ccCCCCccEEEEecccc
Q 013176 107 APTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQ-HTNLRRVTYLVLDEADR 185 (448)
Q Consensus 107 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~-~~~~~~~~~iIvDE~h~ 185 (448)
|||++|+.|++...++++.+..+.+....||.+...+...+++.|||+|+||++|.+++.+. .+++.++.++|+|||++
T Consensus 259 ~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADR 338 (691)
T KOG0338|consen 259 VPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADR 338 (691)
T ss_pred eccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHH
Confidence 99999999999999999999999999999999999999999999999999999999998765 45789999999999999
Q ss_pred cccCCCHHHHHHHHHHcCCCcceEEEeccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceEEEEec--chhHHHHHH
Q 013176 186 MLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVT--EAEKYNRLI 263 (448)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ 263 (448)
|++.+|...+.++++.++.++|.++||||+...+..++..-+..|+.+.+...........+.++..-+ +..+-..+.
T Consensus 339 MLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~ 418 (691)
T KOG0338|consen 339 MLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLA 418 (691)
T ss_pred HHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHHH
Confidence 999999999999999999999999999999999999999999999999988776555554444443332 233334444
Q ss_pred HHHHhhhcCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCCCccE
Q 013176 264 KLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVKDIKC 343 (448)
Q Consensus 264 ~~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~ 343 (448)
.++.... ..+++||+.+++.|+.+.-.|--.|+++.-+||++++.+|-+.++.|++++++|||||+++++|+||+++.+
T Consensus 419 ~l~~rtf-~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~t 497 (691)
T KOG0338|consen 419 SLITRTF-QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQT 497 (691)
T ss_pred HHHHHhc-ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeE
Confidence 5555444 568999999999999999999889999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCChhhhhhcccccCCCCCCceEEEEecCCChHHHHHHHHHH
Q 013176 344 VVNYDFPTSLEDYVHRIGRTGRAGARGTAFTFFTHSNAKFARDLIKIL 391 (448)
Q Consensus 344 Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~ 391 (448)
||+|++|.+...|+||+||+.|.|+.|.+++|+...+.+.++.+.+.-
T Consensus 498 VINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~~ 545 (691)
T KOG0338|consen 498 VINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKSS 545 (691)
T ss_pred EEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhhh
Confidence 999999999999999999999999999999999999888887776663
No 21
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=3e-56 Score=430.30 Aligned_cols=362 Identities=34% Similarity=0.610 Sum_probs=313.6
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEE
Q 013176 26 IRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLV 105 (448)
Q Consensus 26 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vli 105 (448)
..+|+++++++.+.+.+.++||..|+|+|.++++.++.++++++++|||+|||++|+++++..+.... .+.++||
T Consensus 27 ~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~-----~~~~~li 101 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDL-----NACQALI 101 (401)
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCC-----CCceEEE
Confidence 57899999999999999999999999999999999999999999999999999999999998875421 2568999
Q ss_pred EcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccc
Q 013176 106 LAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADR 185 (448)
Q Consensus 106 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~ 185 (448)
++|+++|+.|+.+.+..++...++.+....|+.........+..+++|+|+||+++.+.+......+.++++|||||+|+
T Consensus 102 l~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~ 181 (401)
T PTZ00424 102 LAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADE 181 (401)
T ss_pred ECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHH
Confidence 99999999999999999988778888888888877777777888899999999999999888777889999999999999
Q ss_pred cccCCCHHHHHHHHHHcCCCcceEEEeccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceEEEEec-chhHHHHHHH
Q 013176 186 MLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVT-EAEKYNRLIK 264 (448)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~ 264 (448)
+.+.++...+..++..+++..|++++|||+++....+...++.++........... ...+.+.+.... ...+...+..
T Consensus 182 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~ 260 (401)
T PTZ00424 182 MLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELT-LEGIRQFYVAVEKEEWKFDTLCD 260 (401)
T ss_pred HHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcc-cCCceEEEEecChHHHHHHHHHH
Confidence 99988888888999888889999999999999888888888888776655443322 222333333332 2334555555
Q ss_pred HHHhhhcCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCCCccEE
Q 013176 265 LLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVKDIKCV 344 (448)
Q Consensus 265 ~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~V 344 (448)
++.. ....++||||++++.++.+++.|+..++.+..+|++++.++|..+++.|++|+.+|||||+++++|+|+|++++|
T Consensus 261 ~~~~-~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~V 339 (401)
T PTZ00424 261 LYET-LTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLV 339 (401)
T ss_pred HHHh-cCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEE
Confidence 5543 235689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCChhhhhhcccccCCCCCCceEEEEecCCChHHHHHHHHHHHHh
Q 013176 345 VNYDFPTSLEDYVHRIGRTGRAGARGTAFTFFTHSNAKFARDLIKILQEA 394 (448)
Q Consensus 345 i~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~ 394 (448)
|++++|.+..+|+||+||+||.|..|.+++++.+.+.+....+.+.....
T Consensus 340 I~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~~ 389 (401)
T PTZ00424 340 INYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNTQ 389 (401)
T ss_pred EEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCCc
Confidence 99999999999999999999999999999999998888877776665443
No 22
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.5e-57 Score=392.07 Aligned_cols=365 Identities=34% Similarity=0.508 Sum_probs=323.7
Q ss_pred CcccccccCCCCHHHHHHHHHCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceE
Q 013176 24 RPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIV 103 (448)
Q Consensus 24 ~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~v 103 (448)
...++|+.+++++|+.+.++.+|+..|+|+|..|+|.+++|+|++-+|.||||||.+|.+|+++.+.+.+ .+..+
T Consensus 4 ~t~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP-----~giFa 78 (442)
T KOG0340|consen 4 KTAKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDP-----YGIFA 78 (442)
T ss_pred cccCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCC-----CcceE
Confidence 3467899999999999999999999999999999999999999999999999999999999999998865 47889
Q ss_pred EEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccc----cCCCCccEEE
Q 013176 104 LVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQH----TNLRRVTYLV 179 (448)
Q Consensus 104 lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~----~~~~~~~~iI 179 (448)
+|++||++|+-|+.++|..+++..++++..++|+...-.+...+.+++|++|+||+++.+++..+. ..+.++.++|
T Consensus 79 lvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflV 158 (442)
T KOG0340|consen 79 LVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLV 158 (442)
T ss_pred EEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEE
Confidence 999999999999999999999999999999999998888888899999999999999999887662 2467789999
Q ss_pred EecccccccCCCHHHHHHHHHHcCCCcceEEEeccCchHHHHHHHHHcCCCeEEEeCC-cccccccCcceEEEEecchhH
Q 013176 180 LDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGS-LELKANQSINQVVEVVTEAEK 258 (448)
Q Consensus 180 vDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 258 (448)
+|||+++++..|...+.-+.+.++..+|.+++|||+...+..+.......+..+.... ........+.+-+..++...+
T Consensus 159 lDEADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vk 238 (442)
T KOG0340|consen 159 LDEADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVK 238 (442)
T ss_pred ecchhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhh
Confidence 9999999999999999999999998999999999998766655544444322222222 333445566777777777777
Q ss_pred HHHHHHHHHhhhc--CCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCC
Q 013176 259 YNRLIKLLKEVMD--GSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGL 336 (448)
Q Consensus 259 ~~~l~~~l~~~~~--~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gi 336 (448)
..-+...+....+ .+.++||+++..+|+.++..|+...+.+..+|+.|++.+|-..+.+|+++..++||||+++++|+
T Consensus 239 daYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGL 318 (442)
T KOG0340|consen 239 DAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGL 318 (442)
T ss_pred HHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCC
Confidence 7778888877665 67899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEcCCCCChhhhhhcccccCCCCCCceEEEEecCCChHHHHHHHHHHHH
Q 013176 337 DVKDIKCVVNYDFPTSLEDYVHRIGRTGRAGARGTAFTFFTHSNAKFARDLIKILQE 393 (448)
Q Consensus 337 di~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~ 393 (448)
|+|.++.||++|.|.++.+|+||+||+.|.|+.|.++.++.+.|.+.+..+.+.+.+
T Consensus 319 DIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igk 375 (442)
T KOG0340|consen 319 DIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGK 375 (442)
T ss_pred CCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999988877776665543
No 23
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=6e-57 Score=406.81 Aligned_cols=363 Identities=36% Similarity=0.560 Sum_probs=326.6
Q ss_pred CcccccccCCCCHHHHHHHHHCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceE
Q 013176 24 RPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIV 103 (448)
Q Consensus 24 ~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~v 103 (448)
.+...|++..|++...++++.+||...+++|+..++.++.++|+++.|-||+|||++|++|+++.+.+.....+ .+..+
T Consensus 79 ~~~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r-~~~~v 157 (543)
T KOG0342|consen 79 TTTFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPR-NGTGV 157 (543)
T ss_pred hhhhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCC-CCeeE
Confidence 34567888999999999999999999999999999999999999999999999999999999999887655444 57889
Q ss_pred EEEcCcHHHHHHHHHHHHHhhcCC-CceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccC-CCCccEEEEe
Q 013176 104 LVLAPTRELAVQIQEEALKFGSRA-GIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTN-LRRVTYLVLD 181 (448)
Q Consensus 104 lil~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~-~~~~~~iIvD 181 (448)
+|+|||++|+.|+..+.+++.... .+.+..+.|+.......+++..++.|+|+||++|.+++.+.... ..+.+++|+|
T Consensus 158 lIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlD 237 (543)
T KOG0342|consen 158 LIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLD 237 (543)
T ss_pred EEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEee
Confidence 999999999999999999998877 88999999999998888888889999999999999999877553 4556799999
Q ss_pred cccccccCCCHHHHHHHHHHcCCCcceEEEeccCchHHHHHHHHHcCC-CeEEEeCC-cccccccCcceEEEEecchhHH
Q 013176 182 EADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRN-PYKVIIGS-LELKANQSINQVVEVVTEAEKY 259 (448)
Q Consensus 182 E~h~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 259 (448)
|||++++.+|...+..|+..++..+|.+++|||.++.+++++...+.. +..+.... ........+.|-+.+.+...++
T Consensus 238 EADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f 317 (543)
T KOG0342|consen 238 EADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRF 317 (543)
T ss_pred cchhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchH
Confidence 999999999999999999999999999999999999999999877665 44443322 2233445567767777777778
Q ss_pred HHHHHHHHhhhcCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCC
Q 013176 260 NRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVK 339 (448)
Q Consensus 260 ~~l~~~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~ 339 (448)
..+..++++.....++||||+|......+++.|+...+++..+||..++..|..+..+|++.+..|||||+++++|+|+|
T Consensus 318 ~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P 397 (543)
T KOG0342|consen 318 SLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIP 397 (543)
T ss_pred HHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCC
Confidence 99999999988889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEcCCCCChhhhhhcccccCCCCCCceEEEEecCCChHHHHHH
Q 013176 340 DIKCVVNYDFPTSLEDYVHRIGRTGRAGARGTAFTFFTHSNAKFARDL 387 (448)
Q Consensus 340 ~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l 387 (448)
+++.||++|+|.++.+|+||+||++|.|..|.+++++.+.+..+++.+
T Consensus 398 ~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~L 445 (543)
T KOG0342|consen 398 DVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYL 445 (543)
T ss_pred CceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHH
Confidence 999999999999999999999999999999999999998877766654
No 24
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.9e-58 Score=394.38 Aligned_cols=369 Identities=29% Similarity=0.524 Sum_probs=342.7
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEE
Q 013176 27 RIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVL 106 (448)
Q Consensus 27 ~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil 106 (448)
..|+++.|..+++..+...||..|+|+|++++|.++.|+|+++.+..|+|||-+|++|.+..+.... ..-+.+|+
T Consensus 85 ~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~-----~~IQ~~il 159 (459)
T KOG0326|consen 85 NEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKK-----NVIQAIIL 159 (459)
T ss_pred ccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCccc-----cceeEEEE
Confidence 6789999999999999999999999999999999999999999999999999999999999987643 36678999
Q ss_pred cCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEeccccc
Q 013176 107 APTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRM 186 (448)
Q Consensus 107 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~ 186 (448)
+||++||-|+.+.+.++.++.++++...+|+.+..++.-++....+++|+||++++++.+.....+++..++|+|||+.+
T Consensus 160 VPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKl 239 (459)
T KOG0326|consen 160 VPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKL 239 (459)
T ss_pred eecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhh
Confidence 99999999999999999999999999999999998888888889999999999999999999889999999999999999
Q ss_pred ccCCCHHHHHHHHHHcCCCcceEEEeccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceEEEEecchhHHHHHHHHH
Q 013176 187 LDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLL 266 (448)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 266 (448)
++..|...+..++..+++.+|++++|||+|-.+..+..+++.+|+.+.... .-....+.+++.+..+..|...|..++
T Consensus 240 Ls~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~--eLtl~GvtQyYafV~e~qKvhCLntLf 317 (459)
T KOG0326|consen 240 LSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLME--ELTLKGVTQYYAFVEERQKVHCLNTLF 317 (459)
T ss_pred hchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhh--hhhhcchhhheeeechhhhhhhHHHHH
Confidence 999999999999999999999999999999999999999999999887654 345566788888999999999999888
Q ss_pred HhhhcCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCCCccEEEE
Q 013176 267 KEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVKDIKCVVN 346 (448)
Q Consensus 267 ~~~~~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~Vi~ 346 (448)
....-+ ..|||||+.+.++.+|+.+.+.|+.+..+|+.|.++.|..++..|++|.++.||||+.+.+|||++.+++||+
T Consensus 318 skLqIN-QsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVIN 396 (459)
T KOG0326|consen 318 SKLQIN-QSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVIN 396 (459)
T ss_pred HHhccc-ceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEe
Confidence 765443 5799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChhhhhhcccccCCCCCCceEEEEecCCChHHHHHHHHHHHHhCCCCcHHHH
Q 013176 347 YDFPTSLEDYVHRIGRTGRAGARGTAFTFFTHSNAKFARDLIKILQEAGQIVSPALS 403 (448)
Q Consensus 347 ~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~ 403 (448)
||.|.++++|+||+||+||.|..|.++.+++-.+...+..+...+.....+++..++
T Consensus 397 FDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI~pip~~iD 453 (459)
T KOG0326|consen 397 FDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIKPIPSNID 453 (459)
T ss_pred cCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhccccccCCCcCC
Confidence 999999999999999999999999999999999998888888887777777776553
No 25
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.2e-56 Score=398.69 Aligned_cols=357 Identities=35% Similarity=0.537 Sum_probs=317.0
Q ss_pred cccccCC--CCHHHHHHHHHCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEE
Q 013176 27 RIFQEAN--FPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVL 104 (448)
Q Consensus 27 ~~~~~~~--l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vl 104 (448)
..|++++ |++++.+++..+||...+|+|..++|.++.++|+++.++||||||++|++|++..+..+.....+.....+
T Consensus 4 ~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgal 83 (567)
T KOG0345|consen 4 KSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGAL 83 (567)
T ss_pred cchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEE
Confidence 4566665 45999999999999999999999999999999999999999999999999999998554443333345789
Q ss_pred EEcCcHHHHHHHHHHHHHhhcC-CCceEEEEEcCCCchHhHHHHhc-CCcEEEEccHHHHHHHHccccC--CCCccEEEE
Q 013176 105 VLAPTRELAVQIQEEALKFGSR-AGIRSTCIYGGAPKGPQIRDLRR-GVEIVIATPGRLIDMLEAQHTN--LRRVTYLVL 180 (448)
Q Consensus 105 il~P~~~L~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~--~~~~~~iIv 180 (448)
||+||++|+.|+.+....|... .++++.++.||.+.+++...+.. ++.|+|+||++|.+++.+.... +.++.++|+
T Consensus 84 IIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVL 163 (567)
T KOG0345|consen 84 IISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVL 163 (567)
T ss_pred EecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEe
Confidence 9999999999999999988776 67899999999988888877764 6889999999999999885544 458999999
Q ss_pred ecccccccCCCHHHHHHHHHHcCCCcceEEEeccCchHHHHHHHHHcCCCeEEEeCCccc-ccccCcceEEEEecchhHH
Q 013176 181 DEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLEL-KANQSINQVVEVVTEAEKY 259 (448)
Q Consensus 181 DE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 259 (448)
||||++++++|...+..|++.+++.++.=++|||....+.++....+++|..+.+..... ..+..+...+..+....|.
T Consensus 164 DEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~ 243 (567)
T KOG0345|consen 164 DEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKL 243 (567)
T ss_pred cchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHHH
Confidence 999999999999999999999999999999999999999999999999999988765442 2455567777788899999
Q ss_pred HHHHHHHHhhhcCCcEEEEecchhHHHHHHHHHHhC--CCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCC
Q 013176 260 NRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMD--GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLD 337 (448)
Q Consensus 260 ~~l~~~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gid 337 (448)
..+++++.. ...+|+|||++|-...+.++..|... ..++..+||.|++..|..+++.|++..-.||+||+++++|+|
T Consensus 244 ~~lv~~L~~-~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlD 322 (567)
T KOG0345|consen 244 SQLVHLLNN-NKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLD 322 (567)
T ss_pred HHHHHHHhc-cccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCC
Confidence 999999987 45678999999999999999988765 678999999999999999999999877889999999999999
Q ss_pred CCCccEEEEcCCCCChhhhhhcccccCCCCCCceEEEEecCCChHHH
Q 013176 338 VKDIKCVVNYDFPTSLEDYVHRIGRTGRAGARGTAFTFFTHSNAKFA 384 (448)
Q Consensus 338 i~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~ 384 (448)
+|+++.||+||+|.++..|.||+||++|.|..|.+++|+.+.+..+.
T Consensus 323 ip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYv 369 (567)
T KOG0345|consen 323 IPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYV 369 (567)
T ss_pred CCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHH
Confidence 99999999999999999999999999999999999999999655544
No 26
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.9e-56 Score=393.96 Aligned_cols=367 Identities=31% Similarity=0.493 Sum_probs=330.4
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCc-cCCCCceEEE
Q 013176 27 RIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRL-VQGEGPIVLV 105 (448)
Q Consensus 27 ~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~-~~~~~~~vli 105 (448)
++|++++|++.+++++...||..|+-+|..+||.+++++|++..|.||||||.+|++|+++.+...... ....++..+|
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~i 98 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVI 98 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEE
Confidence 799999999999999999999999999999999999999999999999999999999999998665433 4445788999
Q ss_pred EcCcHHHHHHHHHHHHHhhcCC--CceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccc-cCCCCccEEEEec
Q 013176 106 LAPTRELAVQIQEEALKFGSRA--GIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQH-TNLRRVTYLVLDE 182 (448)
Q Consensus 106 l~P~~~L~~q~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~-~~~~~~~~iIvDE 182 (448)
++||++|+.|.+..+.++.... .+++..+..+.+.......+...++|+|+||..++.++.... ..+..++++|+||
T Consensus 99 LvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDE 178 (569)
T KOG0346|consen 99 LVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDE 178 (569)
T ss_pred EechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEech
Confidence 9999999999999988865433 356666665655555556777889999999999999998776 5677899999999
Q ss_pred ccccccCCCHHHHHHHHHHcCCCcceEEEeccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceEEEEecchhHHHHH
Q 013176 183 ADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRL 262 (448)
Q Consensus 183 ~h~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 262 (448)
||.++..||...+..+.+.+++..|.++||||+..++..+-..++.+|........+...+..+.++...+.+.+|+..+
T Consensus 179 ADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKflll 258 (569)
T KOG0346|consen 179 ADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLLL 258 (569)
T ss_pred hhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHHHH
Confidence 99999999999999999999999999999999999999999999999999998888878888889999899999999999
Q ss_pred HHHHHhhhcCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEecc-----------
Q 013176 263 IKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDV----------- 331 (448)
Q Consensus 263 ~~~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~----------- 331 (448)
..+++...-.+|+|||+|+++.|..+.-.|++.|++.+++++.++...|-.++++|+.|-++++|||+.
T Consensus 259 yallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~ 338 (569)
T KOG0346|consen 259 YALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEV 338 (569)
T ss_pred HHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccc
Confidence 999987777789999999999999999999999999999999999999999999999999999999982
Q ss_pred ------------------------ccCCCCCCCccEEEEcCCCCChhhhhhcccccCCCCCCceEEEEecCCChHHHHHH
Q 013176 332 ------------------------AARGLDVKDIKCVVNYDFPTSLEDYVHRIGRTGRAGARGTAFTFFTHSNAKFARDL 387 (448)
Q Consensus 332 ------------------------~~~Gidi~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l 387 (448)
+.+|||+.++.+|++||+|.++..|+||+||++|.+++|.++.|+.+.+......+
T Consensus 339 kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~~~l 418 (569)
T KOG0346|consen 339 KGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGKESL 418 (569)
T ss_pred cccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhhhhHH
Confidence 67899999999999999999999999999999999999999999999877755555
Q ss_pred HHHHHH
Q 013176 388 IKILQE 393 (448)
Q Consensus 388 ~~~~~~ 393 (448)
...+..
T Consensus 419 e~~~~d 424 (569)
T KOG0346|consen 419 ESILKD 424 (569)
T ss_pred HHHHhh
Confidence 444433
No 27
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=6.8e-54 Score=391.13 Aligned_cols=357 Identities=32% Similarity=0.511 Sum_probs=325.3
Q ss_pred CcccccccCCCCHHHHHHHHHCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceE
Q 013176 24 RPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIV 103 (448)
Q Consensus 24 ~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~v 103 (448)
.....|++++++....+.|+..+|..++.+|+++|+..++|++++-.+-||||||++|++|++.++.... .....+.-+
T Consensus 66 ~~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~k-Ws~~DGlGa 144 (758)
T KOG0343|consen 66 TTIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLK-WSPTDGLGA 144 (758)
T ss_pred hhhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcC-CCCCCCcee
Confidence 4456799999999999999999999999999999999999999999999999999999999999976643 233457889
Q ss_pred EEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHcc-ccCCCCccEEEEec
Q 013176 104 LVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQ-HTNLRRVTYLVLDE 182 (448)
Q Consensus 104 lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~-~~~~~~~~~iIvDE 182 (448)
|||.||++||.|+.+.+.+.++...+....+.||.....+..++ .+.+|+||||++|++++... .+..+++-++|+||
T Consensus 145 lIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi-~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDE 223 (758)
T KOG0343|consen 145 LIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERI-SQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDE 223 (758)
T ss_pred EEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhh-hcCCeEEechHHHHHHhhhcCCCCCCcceEEEecc
Confidence 99999999999999999999999999999999999876665554 45789999999999998754 45678889999999
Q ss_pred ccccccCCCHHHHHHHHHHcCCCcceEEEeccCchHHHHHHHHHcCCCeEEEeCC-cccccccCcceEEEEecchhHHHH
Q 013176 183 ADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGS-LELKANQSINQVVEVVTEAEKYNR 261 (448)
Q Consensus 183 ~h~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 261 (448)
|+++++++|...+..|+..+++.+|.+++|||...++..+++..+.+|..+.+.. .....+..+.|.+..++..+|+..
T Consensus 224 ADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~ 303 (758)
T KOG0343|consen 224 ADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDM 303 (758)
T ss_pred HHHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHHH
Confidence 9999999999999999999999999999999999999999999999998887763 335677889999999999999999
Q ss_pred HHHHHHhhhcCCcEEEEecchhHHHHHHHHHHhC--CCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCC
Q 013176 262 LIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMD--GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVK 339 (448)
Q Consensus 262 l~~~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~ 339 (448)
|..+++.+.. .++|||+++.+++..+++.+.+. |+++..+||.|++..|.++...|.....-||+||+++++|+|+|
T Consensus 304 L~sFI~shlk-~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFp 382 (758)
T KOG0343|consen 304 LWSFIKSHLK-KKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFP 382 (758)
T ss_pred HHHHHHhccc-cceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCc
Confidence 9999988654 57999999999999999999875 88999999999999999999999988889999999999999999
Q ss_pred CccEEEEcCCCCChhhhhhcccccCCCCCCceEEEEecCCChHH
Q 013176 340 DIKCVVNYDFPTSLEDYVHRIGRTGRAGARGTAFTFFTHSNAKF 383 (448)
Q Consensus 340 ~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 383 (448)
.++.||.+|+|.++.+|+||+||+.|....|.+++++.+.+.++
T Consensus 383 aVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~ 426 (758)
T KOG0343|consen 383 AVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEA 426 (758)
T ss_pred ccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHH
Confidence 99999999999999999999999999999999999999988543
No 28
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.4e-54 Score=373.66 Aligned_cols=392 Identities=28% Similarity=0.460 Sum_probs=331.5
Q ss_pred HHHHHhcCCeEEecCCCCCcccccccCCCCHHHHHHHHHCCCCCCcHHHHhHHHHhhcC--CcEEEEcCCCChHHHHHHH
Q 013176 6 VKMYRARREITVEGHDVPRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKG--RDLIGIAETGSGKTLSYLL 83 (448)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~~~--~~~lv~~~tGsGKT~~~~l 83 (448)
+++|++.+=..+++..+-+..++|++++|.|++.+.++.|+|..|+.+|..++|.++.. ++++..+..|+|||.+|.+
T Consensus 69 l~~~~~~~vk~~dpnsPlyS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL 148 (477)
T KOG0332|consen 69 LNKFIESNVKLADPNSPLYSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVL 148 (477)
T ss_pred hcchhhhceeecCCCCCccccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHH
Confidence 34455444444454555566799999999999999999999999999999999999987 6899999999999999999
Q ss_pred HHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHH
Q 013176 84 PAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLID 163 (448)
Q Consensus 84 ~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~ 163 (448)
.++.++..... .|+++.|+||++||.|+.+.+.+.+++.++.......+... .+.-.-..+|+|+||+.+.+
T Consensus 149 ~MLsrvd~~~~-----~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~---~rG~~i~eqIviGTPGtv~D 220 (477)
T KOG0332|consen 149 TMLSRVDPDVV-----VPQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKA---KRGNKLTEQIVIGTPGTVLD 220 (477)
T ss_pred HHHHhcCcccc-----CCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCccc---ccCCcchhheeeCCCccHHH
Confidence 99998766533 67899999999999999999999999888777766655411 11111235799999999999
Q ss_pred HHHc-cccCCCCccEEEEecccccccC-CCHHHHHHHHHHcCCCcceEEEeccCchHHHHHHHHHcCCCeEEEeCCcccc
Q 013176 164 MLEA-QHTNLRRVTYLVLDEADRMLDM-GFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELK 241 (448)
Q Consensus 164 ~~~~-~~~~~~~~~~iIvDE~h~~~~~-~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (448)
+... ....+..+..+|+|||+.+.+. ||...-..+...++++.|++++|||+...+..++....+++..+.+...+..
T Consensus 221 lm~klk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~ 300 (477)
T KOG0332|consen 221 LMLKLKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELA 300 (477)
T ss_pred HHHHHHhhChhhceEEEecchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhcc
Confidence 9887 6667888999999999998774 5777777888888889999999999999999999999999999999888877
Q ss_pred cccCcceEEEEecchhHHHHHHHHHHhhhcCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcC
Q 013176 242 ANQSINQVVEVVTEAEKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSG 321 (448)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g 321 (448)
.......++......+|++.+.++.....- +..||||.+++.|..++..+.+.|+.+.++||++..++|..+++.|+.|
T Consensus 301 L~~IkQlyv~C~~~~~K~~~l~~lyg~~ti-gqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g 379 (477)
T KOG0332|consen 301 LDNIKQLYVLCACRDDKYQALVNLYGLLTI-GQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREG 379 (477)
T ss_pred ccchhhheeeccchhhHHHHHHHHHhhhhh-hheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcC
Confidence 776666666667788999999986654333 4689999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeccccCCCCCCCccEEEEcCCCC------ChhhhhhcccccCCCCCCceEEEEecC-CChHHHHHHHHHHHHh
Q 013176 322 RSPIMTATDVAARGLDVKDIKCVVNYDFPT------SLEDYVHRIGRTGRAGARGTAFTFFTH-SNAKFARDLIKILQEA 394 (448)
Q Consensus 322 ~~~vLv~T~~~~~Gidi~~~~~Vi~~~~p~------s~~~~~Q~~GR~~R~g~~g~~~~~~~~-~~~~~~~~l~~~~~~~ 394 (448)
..+|||+|+++++|||++.++.||+||+|. +.+.|+||+||+||.|+.|.++-+++. ...+.++.+.++....
T Consensus 380 ~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~ 459 (477)
T KOG0332|consen 380 KEKVLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMK 459 (477)
T ss_pred cceEEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhc
Confidence 999999999999999999999999999995 889999999999999999999888764 4677888888888544
Q ss_pred -CCCCcHHHHhhh
Q 013176 395 -GQIVSPALSGLA 406 (448)
Q Consensus 395 -~~~~~~~l~~~~ 406 (448)
....++.++.+.
T Consensus 460 i~~~~~~d~~E~e 472 (477)
T KOG0332|consen 460 IKRLDPDDLDELE 472 (477)
T ss_pred ceecCCccHHHHH
Confidence 444455555544
No 29
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.8e-53 Score=387.14 Aligned_cols=373 Identities=34% Similarity=0.534 Sum_probs=313.9
Q ss_pred cCCCCCcccccccCCCCHHHHHHHHH-CCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcC-CCcc
Q 013176 19 GHDVPRPIRIFQEANFPDYCLEVIAK-LGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQ-PRLV 96 (448)
Q Consensus 19 ~~~~~~p~~~~~~~~l~~~l~~~~~~-~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~-~~~~ 96 (448)
-+..|..-..|..++|++.+...+.. |+|..|+.+|+++||.++.++|++|.++||||||++|++|+++.+... .+..
T Consensus 128 v~e~~fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~ 207 (708)
T KOG0348|consen 128 VSEAPFTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQ 207 (708)
T ss_pred ccccccccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCcccc
Confidence 35556666889999999999999865 899999999999999999999999999999999999999999998664 3455
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHHHHhhcCCCce-EEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHcccc-CCCC
Q 013176 97 QGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIR-STCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHT-NLRR 174 (448)
Q Consensus 97 ~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~-~~~~ 174 (448)
+..++.+||++||++||.|+++.++++.+.+..- -..+.||.....+..++++++.|+|+||++|++++.+... .+++
T Consensus 208 Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~ 287 (708)
T KOG0348|consen 208 RSDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSR 287 (708)
T ss_pred ccCCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeee
Confidence 7789999999999999999999999998866543 3567889888889999999999999999999999987654 6788
Q ss_pred ccEEEEecccccccCCCHHHHHHHHHHcCC-------------CcceEEEeccCchHHHHHHHHHcCCCeEEEeCCcc--
Q 013176 175 VTYLVLDEADRMLDMGFEPQIRKIVTQIRP-------------DRQTLYWSATWPREVETLARQFLRNPYKVIIGSLE-- 239 (448)
Q Consensus 175 ~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~-------------~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-- 239 (448)
+.++|+||+|++++.||.+.+..|+..+.. ..|.+++|||+...+..++..-+.+|..+......
T Consensus 288 LRwlVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~ 367 (708)
T KOG0348|consen 288 LRWLVLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQ 367 (708)
T ss_pred eeEEEecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhh
Confidence 999999999999999999999999877721 35778999999999999999888888877622111
Q ss_pred ----------------------cccccCcceEEEEecchhHHHHHHHHHHhhh---cCCcEEEEecchhHHHHHHHHHHh
Q 013176 240 ----------------------LKANQSINQVVEVVTEAEKYNRLIKLLKEVM---DGSRILIFTETKKGCDQVTRQLRM 294 (448)
Q Consensus 240 ----------------------~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~k~lVf~~~~~~~~~l~~~L~~ 294 (448)
...+..+.+.+.+++..-.+-.|..+|.... ...|+|||+++.+.++.-++.|.+
T Consensus 368 ~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~ 447 (708)
T KOG0348|consen 368 LNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSE 447 (708)
T ss_pred cCcchhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHh
Confidence 1122233444555555555556666665443 355899999999999888887754
Q ss_pred C----------------------CCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCCCccEEEEcCCCCC
Q 013176 295 D----------------------GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVKDIKCVVNYDFPTS 352 (448)
Q Consensus 295 ~----------------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~Vi~~~~p~s 352 (448)
. +.+++.+||+|++++|..+++.|....-.||+||+++++|+|+|++.+||.||+|.+
T Consensus 448 ~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s 527 (708)
T KOG0348|consen 448 ALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFS 527 (708)
T ss_pred hhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCC
Confidence 2 234779999999999999999999988889999999999999999999999999999
Q ss_pred hhhhhhcccccCCCCCCceEEEEecCCChHHHHHHHHHH
Q 013176 353 LEDYVHRIGRTGRAGARGTAFTFFTHSNAKFARDLIKIL 391 (448)
Q Consensus 353 ~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~ 391 (448)
+++|+||+||+.|.|.+|.+++|+.+.+.++++.+....
T Consensus 528 ~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~~~ 566 (708)
T KOG0348|consen 528 TADYLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKKHH 566 (708)
T ss_pred HHHHHHHhhhhhhccCCCceEEEecccHHHHHHHHHhhc
Confidence 999999999999999999999999999998777665443
No 30
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=3.4e-50 Score=407.06 Aligned_cols=331 Identities=21% Similarity=0.285 Sum_probs=262.6
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHH
Q 013176 33 NFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTREL 112 (448)
Q Consensus 33 ~l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L 112 (448)
.+++.+.++++++||..|+++|.++++.+++++|+++.+|||||||++|++|++..+... .+.++||++||++|
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~------~~~~aL~l~PtraL 93 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADD------PRATALYLAPTKAL 93 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhC------CCcEEEEEcChHHH
Confidence 588999999999999999999999999999999999999999999999999999998653 25789999999999
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHcc----ccCCCCccEEEEeccccccc
Q 013176 113 AVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQ----HTNLRRVTYLVLDEADRMLD 188 (448)
Q Consensus 113 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~----~~~~~~~~~iIvDE~h~~~~ 188 (448)
+.|+.+.++++. ..++++..+.|+.+. .+...+..+++|+|+||+++...+... ...++++++||+||+|.+.+
T Consensus 94 a~q~~~~l~~l~-~~~i~v~~~~Gdt~~-~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g 171 (742)
T TIGR03817 94 AADQLRAVRELT-LRGVRPATYDGDTPT-EERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG 171 (742)
T ss_pred HHHHHHHHHHhc-cCCeEEEEEeCCCCH-HHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC
Confidence 999999999987 346788777776654 455566777999999999997543321 12367899999999999876
Q ss_pred CCCHHHHHHHHHH-------cCCCcceEEEeccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceEEEEe--------
Q 013176 189 MGFEPQIRKIVTQ-------IRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVV-------- 253 (448)
Q Consensus 189 ~~~~~~~~~~~~~-------~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 253 (448)
. |+..+..+++. .....|++++|||+++..+ .+..+++.+........ .............
T Consensus 172 ~-fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~i~~~~--~~~~~~~~~~~~p~~~~~~~~ 247 (742)
T TIGR03817 172 V-FGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVAVTEDG--SPRGARTVALWEPPLTELTGE 247 (742)
T ss_pred c-cHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEEECCCC--CCcCceEEEEecCCccccccc
Confidence 3 56554444333 3456899999999987754 56677777654432211 1111111111000
Q ss_pred --------cchhHHHHHHHHHHhhhcCCcEEEEecchhHHHHHHHHHHhC--------CCCeEEEcCCCCHHHHHHHHHH
Q 013176 254 --------TEAEKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMD--------GWPALSIHGDKNQSERDWVLAE 317 (448)
Q Consensus 254 --------~~~~~~~~l~~~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~--------~~~~~~~~~~~~~~~r~~~~~~ 317 (448)
....+...+..+++ .+.++||||++++.++.++..|++. +.++..+|+++++++|.+++++
T Consensus 248 ~~~~~r~~~~~~~~~~l~~l~~---~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~ 324 (742)
T TIGR03817 248 NGAPVRRSASAEAADLLADLVA---EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERA 324 (742)
T ss_pred cccccccchHHHHHHHHHHHHH---CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHH
Confidence 01123333333333 3679999999999999999988763 4678899999999999999999
Q ss_pred HhcCCCCEEEEeccccCCCCCCCccEEEEcCCCCChhhhhhcccccCCCCCCceEEEEecC
Q 013176 318 FRSGRSPIMTATDVAARGLDVKDIKCVVNYDFPTSLEDYVHRIGRTGRAGARGTAFTFFTH 378 (448)
Q Consensus 318 f~~g~~~vLv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~ 378 (448)
|++|++++||||+++++|||+|++++||++++|.+..+|+||+||+||.|+.|.++++...
T Consensus 325 f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~ 385 (742)
T TIGR03817 325 LRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARD 385 (742)
T ss_pred HHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCC
Confidence 9999999999999999999999999999999999999999999999999999999988864
No 31
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=4.2e-50 Score=403.75 Aligned_cols=339 Identities=23% Similarity=0.324 Sum_probs=266.6
Q ss_pred cCCCCHHHHHHHHH-CCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCc
Q 013176 31 EANFPDYCLEVIAK-LGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPT 109 (448)
Q Consensus 31 ~~~l~~~l~~~~~~-~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~ 109 (448)
.++.++.+...++. +||..+||+|.++|+.++.++|+++++|||+|||+||++|++.. ...+|||+|+
T Consensus 441 ~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~-----------~GiTLVISPL 509 (1195)
T PLN03137 441 NFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC-----------PGITLVISPL 509 (1195)
T ss_pred CCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc-----------CCcEEEEeCH
Confidence 35666677777665 89999999999999999999999999999999999999999864 4569999999
Q ss_pred HHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHHHHh------cCCcEEEEccHHHHH--HHHccc---cCCCCccEE
Q 013176 110 RELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLR------RGVEIVIATPGRLID--MLEAQH---TNLRRVTYL 178 (448)
Q Consensus 110 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~iiv~T~~~l~~--~~~~~~---~~~~~~~~i 178 (448)
++|+.++...+.. .++.+..+.++....+....+. ..++|+++||++|.. .+.... .....+++|
T Consensus 510 iSLmqDQV~~L~~----~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslI 585 (1195)
T PLN03137 510 VSLIQDQIMNLLQ----ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARF 585 (1195)
T ss_pred HHHHHHHHHHHHh----CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhcccccee
Confidence 9999877766665 3788888888877655543332 468999999999852 122111 123447899
Q ss_pred EEecccccccCC--CHHHHHHH--HHHcCCCcceEEEeccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceEEEEec
Q 013176 179 VLDEADRMLDMG--FEPQIRKI--VTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVT 254 (448)
Q Consensus 179 IvDE~h~~~~~~--~~~~~~~~--~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (448)
||||||++++|+ |+..+..+ +...-+..+++++|||+++.+...+...+............ . +..+ .+.+..
T Consensus 586 VIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf-~-RpNL--~y~Vv~ 661 (1195)
T PLN03137 586 VIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSF-N-RPNL--WYSVVP 661 (1195)
T ss_pred ccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeeccc-C-ccce--EEEEec
Confidence 999999999987 77777653 33333678899999999998887666655543333222221 1 1112 222222
Q ss_pred ch-hHHHHHHHHHHhhhcCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEecccc
Q 013176 255 EA-EKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAA 333 (448)
Q Consensus 255 ~~-~~~~~l~~~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~ 333 (448)
.. .....+..++.....+.+.||||.+++.++.+++.|.+.++.+..||++|++++|..+++.|.+|+++|||||.+++
T Consensus 662 k~kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFG 741 (1195)
T PLN03137 662 KTKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFG 741 (1195)
T ss_pred cchhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhh
Confidence 22 22455666666544466899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccEEEEcCCCCChhhhhhcccccCCCCCCceEEEEecCCChHHHHHHH
Q 013176 334 RGLDVKDIKCVVNYDFPTSLEDYVHRIGRTGRAGARGTAFTFFTHSNAKFARDLI 388 (448)
Q Consensus 334 ~Gidi~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~ 388 (448)
+|||+|++++||++++|.+++.|+|++||+||.|..+.|++|++..|....+.++
T Consensus 742 MGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI 796 (1195)
T PLN03137 742 MGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMI 796 (1195)
T ss_pred cCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999877666555554
No 32
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=8.3e-50 Score=389.27 Aligned_cols=325 Identities=25% Similarity=0.367 Sum_probs=256.6
Q ss_pred HCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013176 44 KLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (448)
Q Consensus 44 ~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~ 123 (448)
.+||..|+|+|.++++.+++++++++.+|||+|||++|++|++.. +..++|++|+++|+.|+.+.+..+
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~-----------~~~~lVi~P~~~L~~dq~~~l~~~ 74 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS-----------DGITLVISPLISLMEDQVLQLKAS 74 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc-----------CCcEEEEecHHHHHHHHHHHHHHc
Confidence 479999999999999999999999999999999999999999863 456899999999999999988864
Q ss_pred hcCCCceEEEEEcCCCchHhH---HHH-hcCCcEEEEccHHHHHHH-Hcccc-CCCCccEEEEecccccccCC--CHHHH
Q 013176 124 GSRAGIRSTCIYGGAPKGPQI---RDL-RRGVEIVIATPGRLIDML-EAQHT-NLRRVTYLVLDEADRMLDMG--FEPQI 195 (448)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~iiv~T~~~l~~~~-~~~~~-~~~~~~~iIvDE~h~~~~~~--~~~~~ 195 (448)
++.+..+.++....+.. ..+ ...++|+++||+.+.... ..... ...++++|||||||++++|+ |...+
T Consensus 75 ----gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~ 150 (470)
T TIGR00614 75 ----GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDY 150 (470)
T ss_pred ----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHH
Confidence 56777777766544322 222 235899999999975322 11111 45778999999999999887 56665
Q ss_pred HHH---HHHcCCCcceEEEeccCchHHHHHHHHHcC--CCeEEEeCCcccccccCcceEEEEecchhHHHHHHHHHHhhh
Q 013176 196 RKI---VTQIRPDRQTLYWSATWPREVETLARQFLR--NPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKEVM 270 (448)
Q Consensus 196 ~~~---~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 270 (448)
..+ ...+ ++.+++++|||+++.+...+...+. ++.... .. . . ...+...+ ..........+..++....
T Consensus 151 ~~l~~l~~~~-~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~-~s-~-~-r~nl~~~v-~~~~~~~~~~l~~~l~~~~ 224 (470)
T TIGR00614 151 KALGSLKQKF-PNVPIMALTATASPSVREDILRQLNLKNPQIFC-TS-F-D-RPNLYYEV-RRKTPKILEDLLRFIRKEF 224 (470)
T ss_pred HHHHHHHHHc-CCCceEEEecCCCHHHHHHHHHHcCCCCCcEEe-CC-C-C-CCCcEEEE-EeCCccHHHHHHHHHHHhc
Confidence 544 3333 6788999999999887666555443 232222 11 1 1 11122111 1122245666777776555
Q ss_pred cCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCCCccEEEEcCCC
Q 013176 271 DGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVKDIKCVVNYDFP 350 (448)
Q Consensus 271 ~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~Vi~~~~p 350 (448)
.++++||||++++.++.+++.|++.++.+..+|++++.++|..+++.|++|+.+|||||+++++|+|+|++++||++++|
T Consensus 225 ~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P 304 (470)
T TIGR00614 225 KGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLP 304 (470)
T ss_pred CCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCC
Confidence 67788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhhhhcccccCCCCCCceEEEEecCCChHHHHHHHH
Q 013176 351 TSLEDYVHRIGRTGRAGARGTAFTFFTHSNAKFARDLIK 389 (448)
Q Consensus 351 ~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~ 389 (448)
.++..|+|++||+||.|..+.|++++.+.+....+.++.
T Consensus 305 ~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~~ 343 (470)
T TIGR00614 305 KSMESYYQESGRAGRDGLPSECHLFYAPADINRLRRLLM 343 (470)
T ss_pred CCHHHHHhhhcCcCCCCCCceEEEEechhHHHHHHHHHh
Confidence 999999999999999999999999999887776665543
No 33
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.3e-51 Score=371.25 Aligned_cols=354 Identities=33% Similarity=0.517 Sum_probs=292.0
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHhHHHHhhcC-CcEEEEcCCCChHHHHHHHHHHHHhhcCCCc--------c
Q 013176 26 IRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKG-RDLIGIAETGSGKTLSYLLPAFVHVSAQPRL--------V 96 (448)
Q Consensus 26 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~~~-~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~--------~ 96 (448)
+.-|.++.+|..+++++..+||..|+++|.-.+|++..+ .|++-.|.||||||++|-+|+++.+...... .
T Consensus 180 vsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~ 259 (731)
T KOG0347|consen 180 VSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSA 259 (731)
T ss_pred hHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHh
Confidence 457888999999999999999999999999999999998 6999999999999999999999954332111 1
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHcccc---CCC
Q 013176 97 QGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHT---NLR 173 (448)
Q Consensus 97 ~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~---~~~ 173 (448)
+...+..||++||++||.|+.+-+...+...++++..++||.....+.+.+...++|+|+||++|+.++..... ++.
T Consensus 260 k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k 339 (731)
T KOG0347|consen 260 KYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFK 339 (731)
T ss_pred ccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhh
Confidence 11234599999999999999999999999999999999999999888888889999999999999999986654 567
Q ss_pred CccEEEEecccccccCCCHHHHHHHHHHcC-----CCcceEEEeccCchHH---------------------HHHHHHH-
Q 013176 174 RVTYLVLDEADRMLDMGFEPQIRKIVTQIR-----PDRQTLYWSATWPREV---------------------ETLARQF- 226 (448)
Q Consensus 174 ~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~-----~~~~~v~~SAT~~~~~---------------------~~~~~~~- 226 (448)
.++++|+||+++|++.+....+..++..+. ...|.+.+|||+.-.. +.++...
T Consensus 340 ~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig 419 (731)
T KOG0347|consen 340 KVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIG 419 (731)
T ss_pred hceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHhC
Confidence 789999999999999998888888877664 4568999999985321 1111111
Q ss_pred -cCCCeEEEeCCcccccccCcceEEEEecchhHHHHHHHHHHhh--------------hcCCcEEEEecchhHHHHHHHH
Q 013176 227 -LRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKEV--------------MDGSRILIFTETKKGCDQVTRQ 291 (448)
Q Consensus 227 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--------------~~~~k~lVf~~~~~~~~~l~~~ 291 (448)
...|. ++...+.......+.+-+-++ ...+++|||||+++.+..++-.
T Consensus 420 ~~~kpk-----------------iiD~t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~ryPGrTlVF~NsId~vKRLt~~ 482 (731)
T KOG0347|consen 420 FRGKPK-----------------IIDLTPQSATASTLTESLIECPPLEKDLYLYYFLTRYPGRTLVFCNSIDCVKRLTVL 482 (731)
T ss_pred ccCCCe-----------------eEecCcchhHHHHHHHHhhcCCccccceeEEEEEeecCCceEEEechHHHHHHHHHH
Confidence 11121 111222222222222211111 1246899999999999999999
Q ss_pred HHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCCCccEEEEcCCCCChhhhhhcccccCCCCCCce
Q 013176 292 LRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVKDIKCVVNYDFPTSLEDYVHRIGRTGRAGARGT 371 (448)
Q Consensus 292 L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~ 371 (448)
|+..+++...+|+.|.+++|-+-+++|++..-.|||||+++++|+|||++.|||+|..|.+.+.|+||.||++|.+..|.
T Consensus 483 L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gv 562 (731)
T KOG0347|consen 483 LNNLDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGV 562 (731)
T ss_pred HhhcCCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCChHHHHHHHHHHHHhCC
Q 013176 372 AFTFFTHSNAKFARDLIKILQEAGQ 396 (448)
Q Consensus 372 ~~~~~~~~~~~~~~~l~~~~~~~~~ 396 (448)
.++++.+.+...+.+|+.-+.....
T Consensus 563 svml~~P~e~~~~~KL~ktL~k~~d 587 (731)
T KOG0347|consen 563 SVMLCGPQEVGPLKKLCKTLKKKED 587 (731)
T ss_pred EEEEeChHHhHHHHHHHHHHhhccC
Confidence 9999999998888888777755543
No 34
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-49 Score=367.98 Aligned_cols=396 Identities=33% Similarity=0.508 Sum_probs=340.5
Q ss_pred hcCCeEEecCCCCCccccccc----CCCCHHHHHHHHHCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHH
Q 013176 11 ARREITVEGHDVPRPIRIFQE----ANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAF 86 (448)
Q Consensus 11 ~~~~~~~~~~~~~~p~~~~~~----~~l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l 86 (448)
......++|..+|+|+.+|++ +.+.+.+++.+...+|..|+|.|.+|+|.++.+++++.|+|||+|||++|.+|++
T Consensus 116 k~~k~~v~G~~~~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil 195 (593)
T KOG0344|consen 116 KSNKINVDGFHLPPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPIL 195 (593)
T ss_pred hcceeeccCCCCCCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHH
Confidence 345678899999999999998 6888999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhh--cCCCceEEEEEcCCCchH-hHHHHhcCCcEEEEccHHHHH
Q 013176 87 VHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG--SRAGIRSTCIYGGAPKGP-QIRDLRRGVEIVIATPGRLID 163 (448)
Q Consensus 87 ~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~iiv~T~~~l~~ 163 (448)
.++..........+.+++|+.|+++|+.|++.++.++. ...++++..+.......+ ........++++|+||-++..
T Consensus 196 ~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~ 275 (593)
T KOG0344|consen 196 QHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVG 275 (593)
T ss_pred HHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHH
Confidence 99887654334457899999999999999999999997 444444443333222111 111222357899999999988
Q ss_pred HHHccc--cCCCCccEEEEecccccccC-CCHHHHHHHHHHcC-CCcceEEEeccCchHHHHHHHHHcCCCeEEEeCCcc
Q 013176 164 MLEAQH--TNLRRVTYLVLDEADRMLDM-GFEPQIRKIVTQIR-PDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLE 239 (448)
Q Consensus 164 ~~~~~~--~~~~~~~~iIvDE~h~~~~~-~~~~~~~~~~~~~~-~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (448)
.+.... ..++.+..+|+||++.+.+. .|..++..++..+. ++..+-+||||.+..+++.+.....++..+.+....
T Consensus 276 ~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~ 355 (593)
T KOG0344|consen 276 LLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRN 355 (593)
T ss_pred HhcCCCccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecch
Confidence 887765 57888999999999999887 78888888887775 456677889999999999999999998888877666
Q ss_pred cccccCcceEEEEecchhHHHHHHHHHHhhhcCCcEEEEecchhHHHHHHHHH-HhCCCCeEEEcCCCCHHHHHHHHHHH
Q 013176 240 LKANQSINQVVEVVTEAEKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQL-RMDGWPALSIHGDKNQSERDWVLAEF 318 (448)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~k~lVf~~~~~~~~~l~~~L-~~~~~~~~~~~~~~~~~~r~~~~~~f 318 (448)
......-+..+...++..|.-.+.+++.... ..+++||+.+.+.|.++...| ...++++.++||..++.+|.+++++|
T Consensus 356 sa~~~V~QelvF~gse~~K~lA~rq~v~~g~-~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~F 434 (593)
T KOG0344|consen 356 SANETVDQELVFCGSEKGKLLALRQLVASGF-KPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERF 434 (593)
T ss_pred hHhhhhhhhheeeecchhHHHHHHHHHhccC-CCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHH
Confidence 4544444555666778888888888887754 347999999999999999999 67799999999999999999999999
Q ss_pred hcCCCCEEEEeccccCCCCCCCccEEEEcCCCCChhhhhhcccccCCCCCCceEEEEecCCChHHHHHHHHHHHHhCCCC
Q 013176 319 RSGRSPIMTATDVAARGLDVKDIKCVVNYDFPTSLEDYVHRIGRTGRAGARGTAFTFFTHSNAKFARDLIKILQEAGQIV 398 (448)
Q Consensus 319 ~~g~~~vLv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 398 (448)
+.|++.||+||+++++|+|+.++++||+||.|.+..+|+||+||+||.|+.|.+++||...+.+..+.+.+.++..+.++
T Consensus 435 R~g~IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~~~sG~ev 514 (593)
T KOG0344|consen 435 RIGKIWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVMEQSGCEV 514 (593)
T ss_pred hccCeeEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHHHHHcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHhhhh
Q 013176 399 SPALSGLAR 407 (448)
Q Consensus 399 ~~~l~~~~~ 407 (448)
++++..+..
T Consensus 515 pe~~m~~~k 523 (593)
T KOG0344|consen 515 PEKIMGIKK 523 (593)
T ss_pred hHHHHhhhh
Confidence 999887754
No 35
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=5.7e-48 Score=385.75 Aligned_cols=335 Identities=22% Similarity=0.374 Sum_probs=258.7
Q ss_pred CCCHHHHHHHHH-CCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHH
Q 013176 33 NFPDYCLEVIAK-LGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRE 111 (448)
Q Consensus 33 ~l~~~l~~~~~~-~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~ 111 (448)
+.++...+.++. +||..++|+|+++++.++.++++++++|||+|||++|++|++.. ...++|++|+++
T Consensus 8 ~~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~-----------~g~tlVisPl~s 76 (607)
T PRK11057 8 NLESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL-----------DGLTLVVSPLIS 76 (607)
T ss_pred CchhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc-----------CCCEEEEecHHH
Confidence 344555566654 89999999999999999999999999999999999999999864 346899999999
Q ss_pred HHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHH---HHh-cCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccc
Q 013176 112 LAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIR---DLR-RGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRML 187 (448)
Q Consensus 112 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~ 187 (448)
|+.|+.+.++.+ ++.+..+.+......... .+. ...+++++||+.+........+...++++|||||||++.
T Consensus 77 L~~dqv~~l~~~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~ 152 (607)
T PRK11057 77 LMKDQVDQLLAN----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCIS 152 (607)
T ss_pred HHHHHHHHHHHc----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccc
Confidence 999999998874 566777766655443322 222 357899999999874322222334568999999999999
Q ss_pred cCC--CHHHHHHH---HHHcCCCcceEEEeccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceEEEEecchhHHHHH
Q 013176 188 DMG--FEPQIRKI---VTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRL 262 (448)
Q Consensus 188 ~~~--~~~~~~~~---~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 262 (448)
+|+ |...+..+ ...+ ++.+++++|||+++.....+...+............ . ...+. +...........+
T Consensus 153 ~~G~~fr~~y~~L~~l~~~~-p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~-~-r~nl~--~~v~~~~~~~~~l 227 (607)
T PRK11057 153 QWGHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSF-D-RPNIR--YTLVEKFKPLDQL 227 (607)
T ss_pred cccCcccHHHHHHHHHHHhC-CCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECCC-C-CCcce--eeeeeccchHHHH
Confidence 876 55555444 3333 578899999999887765554443322221111111 1 11111 1222233344556
Q ss_pred HHHHHhhhcCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCCCcc
Q 013176 263 IKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVKDIK 342 (448)
Q Consensus 263 ~~~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~ 342 (448)
..++.. ..++++||||+++++|+.+++.|++.++.+..+|+++++++|..+++.|++|+.+|||||+++++|||+|+++
T Consensus 228 ~~~l~~-~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~ 306 (607)
T PRK11057 228 MRYVQE-QRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVR 306 (607)
T ss_pred HHHHHh-cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcC
Confidence 665544 3467899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCChhhhhhcccccCCCCCCceEEEEecCCChHHHHHHH
Q 013176 343 CVVNYDFPTSLEDYVHRIGRTGRAGARGTAFTFFTHSNAKFARDLI 388 (448)
Q Consensus 343 ~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~ 388 (448)
+||++++|.|..+|+|++||+||.|.++.+++|+++.+....+.++
T Consensus 307 ~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~~ 352 (607)
T PRK11057 307 FVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCL 352 (607)
T ss_pred EEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988776655543
No 36
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.1e-49 Score=347.60 Aligned_cols=361 Identities=35% Similarity=0.589 Sum_probs=326.0
Q ss_pred CcccccccCCCCHHHHHHHHHCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceE
Q 013176 24 RPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIV 103 (448)
Q Consensus 24 ~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~v 103 (448)
.-..+|++.+|++.|+..++++||..|+.+|+.|+..+.+|.|+.+.+.+|+|||.+|..++++.+.-.. +...+
T Consensus 23 evvdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~-----ke~qa 97 (397)
T KOG0327|consen 23 EVVDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSV-----KETQA 97 (397)
T ss_pred HHhhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcch-----HHHHH
Confidence 3357999999999999999999999999999999999999999999999999999999999999874432 25679
Q ss_pred EEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHHHHh-cCCcEEEEccHHHHHHHHccccCCCCccEEEEec
Q 013176 104 LVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLR-RGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDE 182 (448)
Q Consensus 104 lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE 182 (448)
++++|+++|+.|..+....++...+.++....|+.....+...+. ..++|+++||+++++.+....+....+.++|+||
T Consensus 98 lilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDE 177 (397)
T KOG0327|consen 98 LILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDE 177 (397)
T ss_pred HHhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecc
Confidence 999999999999999999999999999998888888775555544 4589999999999999998877788899999999
Q ss_pred ccccccCCCHHHHHHHHHHcCCCcceEEEeccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceEEEEecchhHHHHH
Q 013176 183 ADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRL 262 (448)
Q Consensus 183 ~h~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 262 (448)
++.++..+|...+..+.+.++++.|++++|||.+.++....+.++.+|..+.....+.. ...+.+.+......+|+..+
T Consensus 178 aDEmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~lt-l~gikq~~i~v~k~~k~~~l 256 (397)
T KOG0327|consen 178 ADEMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELT-LEGIKQFYINVEKEEKLDTL 256 (397)
T ss_pred hHhhhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhh-hhheeeeeeeccccccccHH
Confidence 99999999999999999999999999999999999999999999999999988777644 44456666666666688888
Q ss_pred HHHHHhhhcCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCCCcc
Q 013176 263 IKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVKDIK 342 (448)
Q Consensus 263 ~~~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~ 342 (448)
.++.+ +-...+||||+++.+..+...|...++.+..+|+++.+.+|..++.+|++|..+|||+|+.+++|+|+..++
T Consensus 257 ~dl~~---~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~s 333 (397)
T KOG0327|consen 257 CDLYR---RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVS 333 (397)
T ss_pred HHHHH---hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcc
Confidence 88887 344689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCChhhhhhcccccCCCCCCceEEEEecCCChHHHHHHHHHHHH
Q 013176 343 CVVNYDFPTSLEDYVHRIGRTGRAGARGTAFTFFTHSNAKFARDLIKILQE 393 (448)
Q Consensus 343 ~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~ 393 (448)
.||+|++|....+|+||+||+||.|.+|.++.++...+...+.++.++..-
T Consensus 334 lvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~ 384 (397)
T KOG0327|consen 334 LVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNT 384 (397)
T ss_pred eeeeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCC
Confidence 999999999999999999999999999999999999999888887766543
No 37
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=1.4e-47 Score=384.37 Aligned_cols=326 Identities=22% Similarity=0.358 Sum_probs=259.4
Q ss_pred HHH-HCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHH
Q 013176 41 VIA-KLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEE 119 (448)
Q Consensus 41 ~~~-~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~ 119 (448)
.++ .+||.+++|+|.++++.++.++|+++++|||+|||++|++|++.. ...++|++|+++|+.|+.+.
T Consensus 4 ~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~-----------~g~~lVisPl~sL~~dq~~~ 72 (591)
T TIGR01389 4 VLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL-----------KGLTVVISPLISLMKDQVDQ 72 (591)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc-----------CCcEEEEcCCHHHHHHHHHH
Confidence 344 389999999999999999999999999999999999999998853 44589999999999999999
Q ss_pred HHHhhcCCCceEEEEEcCCCchHhHH---HH-hcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCC--CHH
Q 013176 120 ALKFGSRAGIRSTCIYGGAPKGPQIR---DL-RRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMG--FEP 193 (448)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~--~~~ 193 (448)
++.+ ++.+..+.++....+... .+ ....+|+++||+++............++++|||||||++.+|+ |+.
T Consensus 73 l~~~----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp 148 (591)
T TIGR01389 73 LRAA----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRP 148 (591)
T ss_pred HHHc----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHH
Confidence 8885 567777877766544322 22 2468999999999965444344456679999999999999876 666
Q ss_pred HHHHHHH---HcCCCcceEEEeccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceEEEEecchhHHHHHHHHHHhhh
Q 013176 194 QIRKIVT---QIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKEVM 270 (448)
Q Consensus 194 ~~~~~~~---~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 270 (448)
.+..+.. .+ +..+++++|||+++.+...+...+..+......... ... +..+.......+...+.+++....
T Consensus 149 ~y~~l~~l~~~~-~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~--~r~--nl~~~v~~~~~~~~~l~~~l~~~~ 223 (591)
T TIGR01389 149 EYQRLGSLAERF-PQVPRIALTATADAETRQDIRELLRLADANEFITSF--DRP--NLRFSVVKKNNKQKFLLDYLKKHR 223 (591)
T ss_pred HHHHHHHHHHhC-CCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecCC--CCC--CcEEEEEeCCCHHHHHHHHHHhcC
Confidence 6655533 33 355699999999988877666655432222111111 111 122233334556667777776533
Q ss_pred cCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCCCccEEEEcCCC
Q 013176 271 DGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVKDIKCVVNYDFP 350 (448)
Q Consensus 271 ~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~Vi~~~~p 350 (448)
+.++||||++++.++.+++.|...++++..+|++|+.++|..+++.|.+|+.+|||||+++++|||+|++++||++++|
T Consensus 224 -~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p 302 (591)
T TIGR01389 224 -GQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMP 302 (591)
T ss_pred -CCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCC
Confidence 6789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhhhhcccccCCCCCCceEEEEecCCChHHHHHH
Q 013176 351 TSLEDYVHRIGRTGRAGARGTAFTFFTHSNAKFARDL 387 (448)
Q Consensus 351 ~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l 387 (448)
.|..+|+|++||+||.|..+.++++++..+....+.+
T Consensus 303 ~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~~ 339 (591)
T TIGR01389 303 GNLESYYQEAGRAGRDGLPAEAILLYSPADIALLKRR 339 (591)
T ss_pred CCHHHHhhhhccccCCCCCceEEEecCHHHHHHHHHH
Confidence 9999999999999999999999999987766544443
No 38
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6e-49 Score=348.04 Aligned_cols=361 Identities=35% Similarity=0.542 Sum_probs=334.5
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEE
Q 013176 26 IRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLV 105 (448)
Q Consensus 26 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vli 105 (448)
.-.|+.++|+..+..++..-||+.|+|+|++.+|.++++++++-.+-||||||.||++|+++++.... ..+.+.++
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s----~~g~Rali 95 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS----QTGLRALI 95 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc----ccccceee
Confidence 45799999999999999999999999999999999999999999999999999999999999988754 24778999
Q ss_pred EcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccc
Q 013176 106 LAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADR 185 (448)
Q Consensus 106 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~ 185 (448)
++||++|+.|..+..+.++...+++..+++|+.+.++++..+..++|||++||..+....-...+.++.+.||||||++.
T Consensus 96 lsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadr 175 (529)
T KOG0337|consen 96 LSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADR 175 (529)
T ss_pred ccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhhH
Confidence 99999999999999999999999999999999999999999999999999999999887777778899999999999999
Q ss_pred cccCCCHHHHHHHHHHcCCCcceEEEeccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceEEEEecchhHHHHHHHH
Q 013176 186 MLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKL 265 (448)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 265 (448)
+..++|.+.+.+++..++...|.++||||+|..+..+++.-+.+|..+..... .......+..+..+...+|...|+.+
T Consensus 176 lfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldve-tkise~lk~~f~~~~~a~K~aaLl~i 254 (529)
T KOG0337|consen 176 LFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVE-TKISELLKVRFFRVRKAEKEAALLSI 254 (529)
T ss_pred HHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehh-hhcchhhhhheeeeccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988874433 35555667777788899999999999
Q ss_pred HHhhhcCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCCCccEEE
Q 013176 266 LKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVKDIKCVV 345 (448)
Q Consensus 266 l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~Vi 345 (448)
+......++++|||.+..+++.+...|+..++.+..+++.+++..|..-+..|+.++..++|.|+++.+|+|+|-++.||
T Consensus 255 l~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvi 334 (529)
T KOG0337|consen 255 LGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVI 334 (529)
T ss_pred HhccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccc
Confidence 99888888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCChhhhhhcccccCCCCCCceEEEEecCCChHHHHHHHHHH
Q 013176 346 NYDFPTSLEDYVHRIGRTGRAGARGTAFTFFTHSNAKFARDLIKIL 391 (448)
Q Consensus 346 ~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~ 391 (448)
+||.|.+...|.||+||+.|.|..|.++.++.+.+..+.-+|..++
T Consensus 335 nyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lfl 380 (529)
T KOG0337|consen 335 NYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFL 380 (529)
T ss_pred cccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhc
Confidence 9999999999999999999999999999999998888776665544
No 39
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=2.3e-45 Score=375.02 Aligned_cols=356 Identities=21% Similarity=0.235 Sum_probs=271.1
Q ss_pred HHHHHHHCCCCCCcHHHHhHHHHhhcC------CcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHH
Q 013176 38 CLEVIAKLGFVEPTPIQAQGWPMALKG------RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRE 111 (448)
Q Consensus 38 l~~~~~~~~~~~~~~~Q~~~i~~~~~~------~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~ 111 (448)
..+....++| +|+++|.++++.+.++ ++.++++|||+|||.+|+++++..+.. +.+++|++||++
T Consensus 441 ~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~--------g~qvlvLvPT~~ 511 (926)
T TIGR00580 441 QQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD--------GKQVAVLVPTTL 511 (926)
T ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh--------CCeEEEEeCcHH
Confidence 3445566899 6999999999999875 689999999999999999999888765 568999999999
Q ss_pred HHHHHHHHHHHhhcCCCceEEEEEcCCCchHh---HHHHhc-CCcEEEEccHHHHHHHHccccCCCCccEEEEecccccc
Q 013176 112 LAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQ---IRDLRR-GVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRML 187 (448)
Q Consensus 112 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~ 187 (448)
|+.|+++.++++....++++..+++..+..+. ...+.. .++|+|+||..+ .....+.+++++|+||+|++
T Consensus 512 LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll-----~~~v~f~~L~llVIDEahrf- 585 (926)
T TIGR00580 512 LAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL-----QKDVKFKDLGLLIIDEEQRF- 585 (926)
T ss_pred HHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh-----hCCCCcccCCEEEeeccccc-
Confidence 99999999999888788888888887654433 233333 589999999433 24456788999999999994
Q ss_pred cCCCHHHHHHHHHHcCCCcceEEEeccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceEEEEecchhHHHHHHHHHH
Q 013176 188 DMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLK 267 (448)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 267 (448)
+......+..+.++.++++||||+.+....+......++..+..... ....+...+..... . .....++.
T Consensus 586 ----gv~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~---~R~~V~t~v~~~~~-~--~i~~~i~~ 655 (926)
T TIGR00580 586 ----GVKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPE---DRLPVRTFVMEYDP-E--LVREAIRR 655 (926)
T ss_pred ----chhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCC---CccceEEEEEecCH-H--HHHHHHHH
Confidence 44445556667778899999999887765555444444444332211 11122222221111 1 11112334
Q ss_pred hhhcCCcEEEEecchhHHHHHHHHHHhC--CCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCCCccEEE
Q 013176 268 EVMDGSRILIFTETKKGCDQVTRQLRMD--GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVKDIKCVV 345 (448)
Q Consensus 268 ~~~~~~k~lVf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~Vi 345 (448)
+...+++++|||++++.++.+++.|++. +.++..+||.|++++|.+++++|++|+.+|||||+++++|+|+|++++||
T Consensus 656 el~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VI 735 (926)
T TIGR00580 656 ELLRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTII 735 (926)
T ss_pred HHHcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEE
Confidence 4456789999999999999999999885 67899999999999999999999999999999999999999999999999
Q ss_pred EcCCCC-ChhhhhhcccccCCCCCCceEEEEecCCC--hHHHHHHHHHHHHh---CCCCcHHHHhhhhhcCCCCCCCCC
Q 013176 346 NYDFPT-SLEDYVHRIGRTGRAGARGTAFTFFTHSN--AKFARDLIKILQEA---GQIVSPALSGLARSAAPSFGGSGG 418 (448)
Q Consensus 346 ~~~~p~-s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~--~~~~~~l~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~g~ 418 (448)
++++|. +..+|+|++||+||.|+.|.|++++.+.+ .+...+.++.+++. +..+.-.+.++.-+++|..-|.-.
T Consensus 736 i~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~~~l~~~~~~RL~~~~~~~~~g~gf~ia~~Dl~~Rg~G~~lG~~Q 814 (926)
T TIGR00580 736 IERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQKALTEDAQKRLEAIQEFSELGAGFKIALHDLEIRGAGNLLGEEQ 814 (926)
T ss_pred EecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCcccCCHHHHHHHHHHHHhhcchhhHHHHHHHHHhcCCcCCCCCcc
Confidence 999875 77899999999999999999999987643 13333444445444 347778888888777766654443
No 40
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=3.5e-47 Score=352.95 Aligned_cols=355 Identities=30% Similarity=0.468 Sum_probs=313.1
Q ss_pred cCCCCCcccccccCCCCHHHHHHHHHCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCC
Q 013176 19 GHDVPRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQG 98 (448)
Q Consensus 19 ~~~~~~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~ 98 (448)
+..+|-....|+++.|...++..++..+|..|+++|..|||+++.+.|+||.+..|+|||++|...++..+..+.
T Consensus 17 ~DV~~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~----- 91 (980)
T KOG4284|consen 17 IDVQSNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRS----- 91 (980)
T ss_pred cccccCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCccc-----
Confidence 456677778899999999999999999999999999999999999999999999999999999988888776542
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHhhc-CCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccE
Q 013176 99 EGPIVLVLAPTRELAVQIQEEALKFGS-RAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTY 177 (448)
Q Consensus 99 ~~~~vlil~P~~~L~~q~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~ 177 (448)
...+.+|++||++++-|+.+.+..++. ..++++..+.||+.......++. .++|+|+||+++..+++...++.+.+++
T Consensus 92 ~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk-~~rIvIGtPGRi~qL~el~~~n~s~vrl 170 (980)
T KOG4284|consen 92 SHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLK-QTRIVIGTPGRIAQLVELGAMNMSHVRL 170 (980)
T ss_pred CcceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhh-hceEEecCchHHHHHHHhcCCCccceeE
Confidence 477899999999999999999999987 35799999999998777666654 4679999999999999999999999999
Q ss_pred EEEeccccccc-CCCHHHHHHHHHHcCCCcceEEEeccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceEEEEec-c
Q 013176 178 LVLDEADRMLD-MGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVT-E 255 (448)
Q Consensus 178 iIvDE~h~~~~-~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 255 (448)
+|+|||+.+.+ ..|...+..|+..++..+|++++|||.+..+.+.+..++.+|..+........... +++++.... .
T Consensus 171 fVLDEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~G-ikQyv~~~~s~ 249 (980)
T KOG4284|consen 171 FVLDEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFG-IKQYVVAKCSP 249 (980)
T ss_pred EEeccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeec-hhheeeeccCC
Confidence 99999999988 55899999999999999999999999999999999999999999988777655544 445544433 3
Q ss_pred h-------hHHHHHHHHHHhhhcCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEE
Q 013176 256 A-------EKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTA 328 (448)
Q Consensus 256 ~-------~~~~~l~~~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~ 328 (448)
. .+.+.|-++++.+ +-...||||+....|+-++..|+..|+++.++.|.|++.+|..+++.+++-.++|||+
T Consensus 250 nnsveemrlklq~L~~vf~~i-py~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVs 328 (980)
T KOG4284|consen 250 NNSVEEMRLKLQKLTHVFKSI-PYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVS 328 (980)
T ss_pred cchHHHHHHHHHHHHHHHhhC-chHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEe
Confidence 2 2444444544442 3347899999999999999999999999999999999999999999999999999999
Q ss_pred eccccCCCCCCCccEEEEcCCCCChhhhhhcccccCCCCCCceEEEEecCCCh
Q 013176 329 TDVAARGLDVKDIKCVVNYDFPTSLEDYVHRIGRTGRAGARGTAFTFFTHSNA 381 (448)
Q Consensus 329 T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 381 (448)
|+.-++|||-+++++||+.|+|.+..+|.||+|||||.|..|.+++|+.....
T Consensus 329 TDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 329 TDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERE 381 (980)
T ss_pred cchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchh
Confidence 99999999999999999999999999999999999999999999999876544
No 41
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=5e-46 Score=381.13 Aligned_cols=338 Identities=23% Similarity=0.320 Sum_probs=256.8
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHhHHHH-hhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEE
Q 013176 28 IFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPM-ALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVL 106 (448)
Q Consensus 28 ~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~i~~-~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil 106 (448)
.|+++++++.+.+.+++.||.+|+|+|.++++. +..++|+++++|||||||++|.++++..+.. +.+++|+
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~--------~~kal~i 73 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR--------GGKALYI 73 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc--------CCcEEEE
Confidence 578899999999999999999999999999998 7788999999999999999999999998753 5679999
Q ss_pred cCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEeccccc
Q 013176 107 APTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRM 186 (448)
Q Consensus 107 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~ 186 (448)
+|+++|+.|+.+.++++.. .++++..++|+...... ....++|+|+||+++..++.+....+.+++++|+||+|.+
T Consensus 74 ~P~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l 149 (737)
T PRK02362 74 VPLRALASEKFEEFERFEE-LGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLI 149 (737)
T ss_pred eChHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECcccc
Confidence 9999999999999998754 47888888887654332 2346799999999998888765556788999999999999
Q ss_pred ccCCCHHHHHHHHHHc---CCCcceEEEeccCchHHHHHHHHHcCC-------CeEEEeCCcccccccCcceEEEEecch
Q 013176 187 LDMGFEPQIRKIVTQI---RPDRQTLYWSATWPREVETLARQFLRN-------PYKVIIGSLELKANQSINQVVEVVTEA 256 (448)
Q Consensus 187 ~~~~~~~~~~~~~~~~---~~~~~~v~~SAT~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (448)
.+..++..+..++..+ .+..|++++|||+++. ..+...+... |......... ................
T Consensus 150 ~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n~-~~la~wl~~~~~~~~~rpv~l~~~v~~-~~~~~~~~~~~~~~~~ 227 (737)
T PRK02362 150 DSANRGPTLEVTLAKLRRLNPDLQVVALSATIGNA-DELADWLDAELVDSEWRPIDLREGVFY-GGAIHFDDSQREVEVP 227 (737)
T ss_pred CCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCCH-HHHHHHhCCCcccCCCCCCCCeeeEec-CCeeccccccccCCCc
Confidence 8877887777765554 4678999999999753 3333322211 1110000000 0000000000000111
Q ss_pred hHHHHHHHHHHhhhcCCcEEEEecchhHHHHHHHHHHhCC------------------------------------CCeE
Q 013176 257 EKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDG------------------------------------WPAL 300 (448)
Q Consensus 257 ~~~~~l~~~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~~------------------------------------~~~~ 300 (448)
.+...+..++.....++++||||++++.|+.++..|.... ..+.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva 307 (737)
T PRK02362 228 SKDDTLNLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAA 307 (737)
T ss_pred cchHHHHHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEE
Confidence 1111111222223357799999999999999888875431 3578
Q ss_pred EEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCCCccEEEE----cC-----CCCChhhhhhcccccCCCCCC--
Q 013176 301 SIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVKDIKCVVN----YD-----FPTSLEDYVHRIGRTGRAGAR-- 369 (448)
Q Consensus 301 ~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~Vi~----~~-----~p~s~~~~~Q~~GR~~R~g~~-- 369 (448)
.+|++++.++|..+++.|++|.++|||||+++++|+|+|..++||. || .|.+..+|.||+|||||.|.+
T Consensus 308 ~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~ 387 (737)
T PRK02362 308 FHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPY 387 (737)
T ss_pred eecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCC
Confidence 9999999999999999999999999999999999999999999986 55 578999999999999999875
Q ss_pred ceEEEEecCC
Q 013176 370 GTAFTFFTHS 379 (448)
Q Consensus 370 g~~~~~~~~~ 379 (448)
|.+++++...
T Consensus 388 G~~ii~~~~~ 397 (737)
T PRK02362 388 GEAVLLAKSY 397 (737)
T ss_pred ceEEEEecCc
Confidence 7888887654
No 42
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=6.2e-46 Score=383.50 Aligned_cols=343 Identities=22% Similarity=0.244 Sum_probs=252.3
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCc-cCCCCceEEEEcCcHH
Q 013176 33 NFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRL-VQGEGPIVLVLAPTRE 111 (448)
Q Consensus 33 ~l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~-~~~~~~~vlil~P~~~ 111 (448)
.+++.+.++++. +|..|+|+|+++++.+++++|+++++|||||||++|.+|++..+...... ....+.+++|++|+++
T Consensus 17 ~l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtra 95 (876)
T PRK13767 17 LLRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRA 95 (876)
T ss_pred hcCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHH
Confidence 377888888876 68899999999999999999999999999999999999999987653221 1134678999999999
Q ss_pred HHHHHHHHHHH-------hh----cCC-CceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHcccc--CCCCccE
Q 013176 112 LAVQIQEEALK-------FG----SRA-GIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHT--NLRRVTY 177 (448)
Q Consensus 112 L~~q~~~~~~~-------~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~--~~~~~~~ 177 (448)
|+.|+.+.+.. +. ... ++++...+|+.+..+....+...++|+|+||++|..++.+... .+.++++
T Consensus 96 La~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~ 175 (876)
T PRK13767 96 LNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKW 175 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCE
Confidence 99999876552 22 222 6788889999887777667777899999999999877654432 4678999
Q ss_pred EEEecccccccCCCHHHHHHH----HHHcCCCcceEEEeccCchHHHHHHHHHcCC-----CeEEEeCCcccccccCcce
Q 013176 178 LVLDEADRMLDMGFEPQIRKI----VTQIRPDRQTLYWSATWPREVETLARQFLRN-----PYKVIIGSLELKANQSINQ 248 (448)
Q Consensus 178 iIvDE~h~~~~~~~~~~~~~~----~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 248 (448)
|||||+|.+.+..++..+... .....+..|++++|||+++. ......+... +....+..........+..
T Consensus 176 VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~-~~va~~L~~~~~~~~~r~~~iv~~~~~k~~~i~v 254 (876)
T PRK13767 176 VIVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPL-EEVAKFLVGYEDDGEPRDCEIVDARFVKPFDIKV 254 (876)
T ss_pred EEEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCH-HHHHHHhcCccccCCCCceEEEccCCCccceEEE
Confidence 999999999876655544433 33334678899999998752 3333333221 1111111110000000000
Q ss_pred EE-----EEecchhHHHHHHHHHHhh-hcCCcEEEEecchhHHHHHHHHHHhC------CCCeEEEcCCCCHHHHHHHHH
Q 013176 249 VV-----EVVTEAEKYNRLIKLLKEV-MDGSRILIFTETKKGCDQVTRQLRMD------GWPALSIHGDKNQSERDWVLA 316 (448)
Q Consensus 249 ~~-----~~~~~~~~~~~l~~~l~~~-~~~~k~lVf~~~~~~~~~l~~~L~~~------~~~~~~~~~~~~~~~r~~~~~ 316 (448)
.. ...........+...+.+. ..++++||||+|+..|+.++..|++. +..+..+||++++++|..+++
T Consensus 255 ~~p~~~l~~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~ 334 (876)
T PRK13767 255 ISPVDDLIHTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEE 334 (876)
T ss_pred eccCccccccccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHH
Confidence 00 0011111223333333332 23678999999999999999999873 367999999999999999999
Q ss_pred HHhcCCCCEEEEeccccCCCCCCCccEEEEcCCCCChhhhhhcccccCCCC-CCceEEEEec
Q 013176 317 EFRSGRSPIMTATDVAARGLDVKDIKCVVNYDFPTSLEDYVHRIGRTGRAG-ARGTAFTFFT 377 (448)
Q Consensus 317 ~f~~g~~~vLv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g-~~g~~~~~~~ 377 (448)
.|++|++++||||+++++|||+|++++||+++.|.++.+|+||+||+||.+ ..+.++++..
T Consensus 335 ~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~ 396 (876)
T PRK13767 335 KLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVV 396 (876)
T ss_pred HHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEc
Confidence 999999999999999999999999999999999999999999999999874 3344544443
No 43
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.8e-47 Score=341.06 Aligned_cols=362 Identities=29% Similarity=0.443 Sum_probs=287.4
Q ss_pred ccccccCCCCHHHHHH----------HHHCCCCCCcHHHHhHHHHhhc---------CCcEEEEcCCCChHHHHHHHHHH
Q 013176 26 IRIFQEANFPDYCLEV----------IAKLGFVEPTPIQAQGWPMALK---------GRDLIGIAETGSGKTLSYLLPAF 86 (448)
Q Consensus 26 ~~~~~~~~l~~~l~~~----------~~~~~~~~~~~~Q~~~i~~~~~---------~~~~lv~~~tGsGKT~~~~l~~l 86 (448)
...|+.++.++.+... +..++++.++|+|..+++.++. .+|+.|.||||||||++|.+|++
T Consensus 126 lq~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIV 205 (620)
T KOG0350|consen 126 LQIFSVLGKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIV 205 (620)
T ss_pred eeeeeccchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHH
Confidence 4556666777666655 8889999999999999999853 36899999999999999999999
Q ss_pred HHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHHHHhc-CC----cEEEEccHHH
Q 013176 87 VHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRR-GV----EIVIATPGRL 161 (448)
Q Consensus 87 ~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~iiv~T~~~l 161 (448)
+.+..+.. +..+++|++|+++|+.|+++.+..++...++.|..+.|..+.+.+..++.. .+ ||+|+||++|
T Consensus 206 Q~L~~R~v----~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRL 281 (620)
T KOG0350|consen 206 QLLSSRPV----KRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRL 281 (620)
T ss_pred HHHccCCc----cceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHH
Confidence 99877643 257899999999999999999999999999998888888887777666654 33 8999999999
Q ss_pred HHHHHcc-ccCCCCccEEEEecccccccCCCHHHHHHHHHHc----------------------------------CCCc
Q 013176 162 IDMLEAQ-HTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQI----------------------------------RPDR 206 (448)
Q Consensus 162 ~~~~~~~-~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~----------------------------------~~~~ 206 (448)
.+++.+. .+++.++.++||||+|++++..|..++..+...+ .+..
T Consensus 282 VDHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l 361 (620)
T KOG0350|consen 282 VDHLNNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPL 361 (620)
T ss_pred HHhccCCCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchh
Confidence 9999854 4588999999999999988765544443332222 1122
Q ss_pred ceEEEeccCchHHHHHHHHHcCCCeEEEeCC---cccccccCcceEEEEecchhHHHHHHHHHHhhhcCCcEEEEecchh
Q 013176 207 QTLYWSATWPREVETLARQFLRNPYKVIIGS---LELKANQSINQVVEVVTEAEKYNRLIKLLKEVMDGSRILIFTETKK 283 (448)
Q Consensus 207 ~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~k~lVf~~~~~ 283 (448)
..+++|||+..+-..+....+..|....... .....+..+...........+--.+..++.. .+..++|+|+++..
T Consensus 362 ~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~-~k~~r~lcf~~S~~ 440 (620)
T KOG0350|consen 362 WKLVFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITS-NKLNRTLCFVNSVS 440 (620)
T ss_pred HhhhcchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHH-hhcceEEEEecchH
Confidence 4677899988777777777777775555442 2223333344443333333333344444443 34568999999999
Q ss_pred HHHHHHHHHH----hCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCCCccEEEEcCCCCChhhhhhc
Q 013176 284 GCDQVTRQLR----MDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVKDIKCVVNYDFPTSLEDYVHR 359 (448)
Q Consensus 284 ~~~~l~~~L~----~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Q~ 359 (448)
.+..++..|+ +...++-.+.|.++.+.|.+.++.|..|+++||||++++++|+|+.+++.||+||+|.+..+|+||
T Consensus 441 sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR 520 (620)
T KOG0350|consen 441 SANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHR 520 (620)
T ss_pred HHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHh
Confidence 9999999987 235667778999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCceEEEEecCCChHHHHHHHHHHH
Q 013176 360 IGRTGRAGARGTAFTFFTHSNAKFARDLIKILQ 392 (448)
Q Consensus 360 ~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~ 392 (448)
+||++|.|+.|.++.+.+..+.....++++...
T Consensus 521 ~GRTARAgq~G~a~tll~~~~~r~F~klL~~~~ 553 (620)
T KOG0350|consen 521 AGRTARAGQDGYAITLLDKHEKRLFSKLLKKTN 553 (620)
T ss_pred hcccccccCCceEEEeeccccchHHHHHHHHhc
Confidence 999999999999999999998887776655543
No 44
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.9e-45 Score=350.62 Aligned_cols=330 Identities=24% Similarity=0.382 Sum_probs=264.3
Q ss_pred HHHH-HCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHH
Q 013176 40 EVIA-KLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQE 118 (448)
Q Consensus 40 ~~~~-~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~ 118 (448)
..|+ .+||..+++-|.++|..+++++++++.+|||.|||+||.+|++-. ...+|||+|..+|+.++.+
T Consensus 7 ~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~-----------~G~TLVVSPLiSLM~DQV~ 75 (590)
T COG0514 7 QVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL-----------EGLTLVVSPLISLMKDQVD 75 (590)
T ss_pred HHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc-----------CCCEEEECchHHHHHHHHH
Confidence 4454 379999999999999999999999999999999999999999876 3368999999999999999
Q ss_pred HHHHhhcCCCceEEEEEcCCCchHhH---HHHhc-CCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCC--CH
Q 013176 119 EALKFGSRAGIRSTCIYGGAPKGPQI---RDLRR-GVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMG--FE 192 (448)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~--~~ 192 (448)
.++.. ++.+.++.+..+.++.. ..+.. ..++++.+||+|..-.....+.-..+++++|||||++++|| |+
T Consensus 76 ~l~~~----Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFR 151 (590)
T COG0514 76 QLEAA----GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFR 151 (590)
T ss_pred HHHHc----CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccC
Confidence 99984 67888887776654443 23333 47999999999865544333445568899999999999998 88
Q ss_pred HHHHHHHHHcC--CCcceEEEeccCchHHHHHHHHHcCCCeE-EEeCCcccccccCcceEEEEecchhHHHHHHHHHHh-
Q 013176 193 PQIRKIVTQIR--PDRQTLYWSATWPREVETLARQFLRNPYK-VIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKE- 268 (448)
Q Consensus 193 ~~~~~~~~~~~--~~~~~v~~SAT~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~- 268 (448)
+.+..+..... ++.+++++|||.++.+...+...+..... ...... ..+..........+...+.. ++.+
T Consensus 152 P~Y~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sf--dRpNi~~~v~~~~~~~~q~~----fi~~~ 225 (590)
T COG0514 152 PDYRRLGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGSF--DRPNLALKVVEKGEPSDQLA----FLATV 225 (590)
T ss_pred HhHHHHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecC--CCchhhhhhhhcccHHHHHH----HHHhh
Confidence 88887754432 47889999999999988877766654432 222221 11211122221111222222 3332
Q ss_pred -hhcCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCCCccEEEEc
Q 013176 269 -VMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVKDIKCVVNY 347 (448)
Q Consensus 269 -~~~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~Vi~~ 347 (448)
...++..||||.|++.++.+++.|...|+++..||++|+.++|..+.+.|.+++.+|+|||.++++|||-|+++.|||+
T Consensus 226 ~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~ 305 (590)
T COG0514 226 LPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHY 305 (590)
T ss_pred ccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEe
Confidence 2345578999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhhhhhcccccCCCCCCceEEEEecCCChHHHHHHHHH
Q 013176 348 DFPTSLEDYVHRIGRTGRAGARGTAFTFFTHSNAKFARDLIKI 390 (448)
Q Consensus 348 ~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~ 390 (448)
++|.|+++|.|-+|||||+|....|++++++.|....+.+++.
T Consensus 306 ~lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~i~~ 348 (590)
T COG0514 306 DLPGSIESYYQETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQ 348 (590)
T ss_pred cCCCCHHHHHHHHhhccCCCCcceEEEeeccccHHHHHHHHHh
Confidence 9999999999999999999999999999999998777666554
No 45
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=3.8e-44 Score=373.80 Aligned_cols=360 Identities=19% Similarity=0.199 Sum_probs=277.5
Q ss_pred HHHHHHHHHCCCCCCcHHHHhHHHHhhcC------CcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCc
Q 013176 36 DYCLEVIAKLGFVEPTPIQAQGWPMALKG------RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPT 109 (448)
Q Consensus 36 ~~l~~~~~~~~~~~~~~~Q~~~i~~~~~~------~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~ 109 (448)
++..+...+++| +|++.|.++++.++.+ ++++++++||+|||.+|+.+++..+.. +.+++|++||
T Consensus 588 ~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~--------g~qvlvLvPT 658 (1147)
T PRK10689 588 EQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN--------HKQVAVLVPT 658 (1147)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc--------CCeEEEEeCc
Confidence 556677788999 8999999999999986 799999999999999998888776543 6789999999
Q ss_pred HHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHHHH---h-cCCcEEEEccHHHHHHHHccccCCCCccEEEEecccc
Q 013176 110 RELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDL---R-RGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADR 185 (448)
Q Consensus 110 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~ 185 (448)
++|+.|+++.++++....++++..+++..+..++...+ . ..++|+|+||+.+ +....+.+++++||||+|+
T Consensus 659 ~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL-----~~~v~~~~L~lLVIDEahr 733 (1147)
T PRK10689 659 TLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL-----QSDVKWKDLGLLIVDEEHR 733 (1147)
T ss_pred HHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH-----hCCCCHhhCCEEEEechhh
Confidence 99999999999987766778888888877665554333 2 3689999999644 2344567899999999999
Q ss_pred cccCCCHHHHHHHHHHcCCCcceEEEeccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceEEEEecchhHHHHHHHH
Q 013176 186 MLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKL 265 (448)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 265 (448)
+ + ......+..++++.+++++|||+.+....+....+.++..+..... ....+........... ....+
T Consensus 734 f---G--~~~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~---~r~~v~~~~~~~~~~~---~k~~i 802 (1147)
T PRK10689 734 F---G--VRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPA---RRLAVKTFVREYDSLV---VREAI 802 (1147)
T ss_pred c---c--hhHHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCC---CCCCceEEEEecCcHH---HHHHH
Confidence 6 2 2234455667788999999999988877777766777765543221 1122333332222111 12234
Q ss_pred HHhhhcCCcEEEEecchhHHHHHHHHHHhC--CCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCCCccE
Q 013176 266 LKEVMDGSRILIFTETKKGCDQVTRQLRMD--GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVKDIKC 343 (448)
Q Consensus 266 l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~ 343 (448)
+.+...+++++|||++++.++.+++.|++. +.++..+||+|++++|.+++++|++|+.+|||||+++++|+|+|++++
T Consensus 803 l~el~r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~ 882 (1147)
T PRK10689 803 LREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANT 882 (1147)
T ss_pred HHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCE
Confidence 445556789999999999999999999887 678999999999999999999999999999999999999999999999
Q ss_pred EEEcCCC-CChhhhhhcccccCCCCCCceEEEEecCCC--hHHHHHHHHHHHHhC---CCCcHHHHhhhhhcCCCCCCCC
Q 013176 344 VVNYDFP-TSLEDYVHRIGRTGRAGARGTAFTFFTHSN--AKFARDLIKILQEAG---QIVSPALSGLARSAAPSFGGSG 417 (448)
Q Consensus 344 Vi~~~~p-~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~--~~~~~~l~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~g 417 (448)
||..+.+ .+..+|+|++||+||.|+.|.|++++.... .+...+-++.+++.. .-+.-.+.++.-+++|..-|.-
T Consensus 883 VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~~~~~~~~~~~rl~~~~~~~~lg~gf~~a~~dl~~rg~g~~~g~~ 962 (1147)
T PRK10689 883 IIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEE 962 (1147)
T ss_pred EEEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCCCcccCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCccCCCCc
Confidence 9976654 477889999999999999999998886542 233344445555544 4788888999887777665554
Q ss_pred CCC
Q 013176 418 GNF 420 (448)
Q Consensus 418 ~~~ 420 (448)
..|
T Consensus 963 q~g 965 (1147)
T PRK10689 963 QSG 965 (1147)
T ss_pred cCC
Confidence 443
No 46
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=1.1e-44 Score=370.33 Aligned_cols=339 Identities=22% Similarity=0.275 Sum_probs=258.6
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHhHHHH-hhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEE
Q 013176 28 IFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPM-ALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVL 106 (448)
Q Consensus 28 ~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~i~~-~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil 106 (448)
.|+++++++.+.+.+++.||.+|+|+|.++++. +..++++++++|||||||++|.++++..+... +.+++|+
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~-------~~~~l~l 74 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE-------GGKAVYL 74 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc-------CCeEEEE
Confidence 578899999999999999999999999999986 78899999999999999999999999887653 5689999
Q ss_pred cCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEeccccc
Q 013176 107 APTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRM 186 (448)
Q Consensus 107 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~ 186 (448)
+|+++|+.|+.+.+..+. ..++++..++|+...... ....++|+|+||+++..++.+....++++++||+||+|.+
T Consensus 75 ~P~~aLa~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l 150 (720)
T PRK00254 75 VPLKALAEEKYREFKDWE-KLGLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLI 150 (720)
T ss_pred eChHHHHHHHHHHHHHHh-hcCCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCcc
Confidence 999999999999998864 358899999988765332 2356899999999998887766566889999999999999
Q ss_pred ccCCCHHHHHHHHHHcCCCcceEEEeccCchHHHHHHHHHcCCCeEEEeCCcccccc-cCcceEEEEecch--hH-HHHH
Q 013176 187 LDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKAN-QSINQVVEVVTEA--EK-YNRL 262 (448)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~-~~~l 262 (448)
.+..++..+..++..+....|++++|||+++. ..+.. ++....... ...+.... ....+........ .+ ....
T Consensus 151 ~~~~rg~~le~il~~l~~~~qiI~lSATl~n~-~~la~-wl~~~~~~~-~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~ 227 (720)
T PRK00254 151 GSYDRGATLEMILTHMLGRAQILGLSATVGNA-EELAE-WLNAELVVS-DWRPVKLRKGVFYQGFLFWEDGKIERFPNSW 227 (720)
T ss_pred CCccchHHHHHHHHhcCcCCcEEEEEccCCCH-HHHHH-HhCCccccC-CCCCCcceeeEecCCeeeccCcchhcchHHH
Confidence 88888899999999888889999999999753 44444 443221100 00000000 0000000000110 00 0111
Q ss_pred HHHHHh-hhcCCcEEEEecchhHHHHHHHHHHhC---------------------------------CCCeEEEcCCCCH
Q 013176 263 IKLLKE-VMDGSRILIFTETKKGCDQVTRQLRMD---------------------------------GWPALSIHGDKNQ 308 (448)
Q Consensus 263 ~~~l~~-~~~~~k~lVf~~~~~~~~~l~~~L~~~---------------------------------~~~~~~~~~~~~~ 308 (448)
...+.+ ...++++||||++++.|+.++..|.+. ...+..+|+++++
T Consensus 228 ~~~~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~ 307 (720)
T PRK00254 228 ESLVYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGR 307 (720)
T ss_pred HHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCH
Confidence 222211 224679999999999998877666321 1348899999999
Q ss_pred HHHHHHHHHHhcCCCCEEEEeccccCCCCCCCccEEEE-------cCCCC-ChhhhhhcccccCCCC--CCceEEEEecC
Q 013176 309 SERDWVLAEFRSGRSPIMTATDVAARGLDVKDIKCVVN-------YDFPT-SLEDYVHRIGRTGRAG--ARGTAFTFFTH 378 (448)
Q Consensus 309 ~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~Vi~-------~~~p~-s~~~~~Q~~GR~~R~g--~~g~~~~~~~~ 378 (448)
++|..+++.|++|.++|||||+++++|+|+|..++||. ++.|. +..+|.||+|||||.| ..|.+++++..
T Consensus 308 ~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~ 387 (720)
T PRK00254 308 TERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATT 387 (720)
T ss_pred HHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecC
Confidence 99999999999999999999999999999999999984 44433 5679999999999975 56888888876
Q ss_pred CC
Q 013176 379 SN 380 (448)
Q Consensus 379 ~~ 380 (448)
.+
T Consensus 388 ~~ 389 (720)
T PRK00254 388 EE 389 (720)
T ss_pred cc
Confidence 44
No 47
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=5.5e-44 Score=360.73 Aligned_cols=353 Identities=22% Similarity=0.284 Sum_probs=262.0
Q ss_pred HHHHHHHHHCCCCCCcHHHHhHHHHhhcC------CcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCc
Q 013176 36 DYCLEVIAKLGFVEPTPIQAQGWPMALKG------RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPT 109 (448)
Q Consensus 36 ~~l~~~~~~~~~~~~~~~Q~~~i~~~~~~------~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~ 109 (448)
..+.+....++| +|+++|+++++.+..+ .++++++|||||||++|+++++..+.. +.+++|++||
T Consensus 249 ~~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~--------g~q~lilaPT 319 (681)
T PRK10917 249 ELLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA--------GYQAALMAPT 319 (681)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc--------CCeEEEEecc
Confidence 444556677999 8999999999999876 379999999999999999999887754 6789999999
Q ss_pred HHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHh---HHHHhc-CCcEEEEccHHHHHHHHccccCCCCccEEEEecccc
Q 013176 110 RELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQ---IRDLRR-GVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADR 185 (448)
Q Consensus 110 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~ 185 (448)
++|+.|+++.++++....++++..++|+.+..+. ...+.. .++|+|+||..+.+ ...+.+++++|+||+|+
T Consensus 320 ~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE~Hr 394 (681)
T PRK10917 320 EILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDEQHR 394 (681)
T ss_pred HHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEechhh
Confidence 9999999999999988888999999999875433 334444 59999999977632 34577899999999998
Q ss_pred cccCCCHHHHHHHHHHcCCCcceEEEeccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceEEEEecchhHHHHHHHH
Q 013176 186 MLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKL 265 (448)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 265 (448)
+ +......+.......++++||||+.+....+. ..++.....+.... .....+..... .......+.+.
T Consensus 395 f-----g~~qr~~l~~~~~~~~iL~~SATp~prtl~~~--~~g~~~~s~i~~~p-~~r~~i~~~~~---~~~~~~~~~~~ 463 (681)
T PRK10917 395 F-----GVEQRLALREKGENPHVLVMTATPIPRTLAMT--AYGDLDVSVIDELP-PGRKPITTVVI---PDSRRDEVYER 463 (681)
T ss_pred h-----hHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHH--HcCCCceEEEecCC-CCCCCcEEEEe---CcccHHHHHHH
Confidence 5 33333334444456889999999877554333 23332222222111 11112222222 22222333333
Q ss_pred HH-hhhcCCcEEEEecchh--------HHHHHHHHHHhC--CCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccC
Q 013176 266 LK-EVMDGSRILIFTETKK--------GCDQVTRQLRMD--GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAAR 334 (448)
Q Consensus 266 l~-~~~~~~k~lVf~~~~~--------~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~ 334 (448)
+. ....+.+++|||+.++ .+..+++.|.+. ++++..+||+|++++|.+++++|++|+.+|||||+++++
T Consensus 464 i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~ 543 (681)
T PRK10917 464 IREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEV 543 (681)
T ss_pred HHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceee
Confidence 33 3345779999999653 456677777765 468999999999999999999999999999999999999
Q ss_pred CCCCCCccEEEEcCCCC-ChhhhhhcccccCCCCCCceEEEEecCCChHHHHHHHHHHHHhCCCCcHHHHhhhhhcCCCC
Q 013176 335 GLDVKDIKCVVNYDFPT-SLEDYVHRIGRTGRAGARGTAFTFFTHSNAKFARDLIKILQEAGQIVSPALSGLARSAAPSF 413 (448)
Q Consensus 335 Gidi~~~~~Vi~~~~p~-s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~ 413 (448)
|+|+|++++||++++|. +..++.|++||+||.|..|.|++++.....+.....++.+.+....+.-.-.++..++.+..
T Consensus 544 GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~~~~~~~~~~rl~~~~~~~dgf~iae~dl~~rg~g~~ 623 (681)
T PRK10917 544 GVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYKDPLSETARERLKIMRETNDGFVIAEKDLELRGPGEL 623 (681)
T ss_pred CcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEECCCCChhHHHHHHHHHHhcchHHHHHHhHhhCCCccc
Confidence 99999999999999987 68899999999999999999999996443344555566676666656555556655444444
No 48
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=2.9e-44 Score=354.74 Aligned_cols=341 Identities=24% Similarity=0.300 Sum_probs=269.2
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHH
Q 013176 33 NFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTREL 112 (448)
Q Consensus 33 ~l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L 112 (448)
-|++.++++++.. |.+|||.|.+|++.+.+|+|+|+.+|||||||+++.+|++..+..........+-.+||++|.++|
T Consensus 7 ~l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkAL 85 (814)
T COG1201 7 ILDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKAL 85 (814)
T ss_pred hcCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHH
Confidence 4789999999988 999999999999999999999999999999999999999999887643333347889999999999
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccc--cCCCCccEEEEecccccccCC
Q 013176 113 AVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQH--TNLRRVTYLVLDEADRMLDMG 190 (448)
Q Consensus 113 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~--~~~~~~~~iIvDE~h~~~~~~ 190 (448)
..++...+..++...++.+...+|+++..+..+..++.+||+|+|||+|.-++...+ ..+.++.++||||+|.+....
T Consensus 86 n~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sK 165 (814)
T COG1201 86 NNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESK 165 (814)
T ss_pred HHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccc
Confidence 999999999999999999999999998888888888999999999999977766543 357889999999999988765
Q ss_pred CHHHHH----HHHHHcCCCcceEEEeccCchHHHHHHHHHcCCC--eEEEeCCcccccccCcceEEEEec---chhHHHH
Q 013176 191 FEPQIR----KIVTQIRPDRQTLYWSATWPREVETLARQFLRNP--YKVIIGSLELKANQSINQVVEVVT---EAEKYNR 261 (448)
Q Consensus 191 ~~~~~~----~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 261 (448)
.+..+. ++... ....|.+++|||..+ .+..++.+.+.. ..+..... .....+........ .......
T Consensus 166 RG~~Lsl~LeRL~~l-~~~~qRIGLSATV~~-~~~varfL~g~~~~~~Iv~~~~--~k~~~i~v~~p~~~~~~~~~~~~~ 241 (814)
T COG1201 166 RGVQLALSLERLREL-AGDFQRIGLSATVGP-PEEVAKFLVGFGDPCEIVDVSA--AKKLEIKVISPVEDLIYDEELWAA 241 (814)
T ss_pred cchhhhhhHHHHHhh-CcccEEEeehhccCC-HHHHHHHhcCCCCceEEEEccc--CCcceEEEEecCCccccccchhHH
Confidence 444333 33333 347899999999874 444555555443 33332221 12211211111111 0111222
Q ss_pred HHHHHH-hhhcCCcEEEEecchhHHHHHHHHHHhCC-CCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCC
Q 013176 262 LIKLLK-EVMDGSRILIFTETKKGCDQVTRQLRMDG-WPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVK 339 (448)
Q Consensus 262 l~~~l~-~~~~~~k~lVf~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~ 339 (448)
+...+. .....+.+|||+||+..++.++..|++.+ ..+..+||+++.+.|..+.++|++|+.+++|||+.++-|||+.
T Consensus 242 ~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG 321 (814)
T COG1201 242 LYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIG 321 (814)
T ss_pred HHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccC
Confidence 222222 22235589999999999999999999986 8899999999999999999999999999999999999999999
Q ss_pred CccEEEEcCCCCChhhhhhcccccCCC-CCCceEEEEecC
Q 013176 340 DIKCVVNYDFPTSLEDYVHRIGRTGRA-GARGTAFTFFTH 378 (448)
Q Consensus 340 ~~~~Vi~~~~p~s~~~~~Q~~GR~~R~-g~~g~~~~~~~~ 378 (448)
+++.||++..|.++..++||+||+|+. +...+.+++...
T Consensus 322 ~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 322 DIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred CceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 999999999999999999999999964 555666666554
No 49
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=1.9e-43 Score=354.66 Aligned_cols=354 Identities=21% Similarity=0.279 Sum_probs=260.0
Q ss_pred HHHHHHHHHCCCCCCcHHHHhHHHHhhcC------CcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCc
Q 013176 36 DYCLEVIAKLGFVEPTPIQAQGWPMALKG------RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPT 109 (448)
Q Consensus 36 ~~l~~~~~~~~~~~~~~~Q~~~i~~~~~~------~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~ 109 (448)
+.+.+.++.++| +|++.|+++++.+..+ .+.++++|||||||++|+++++..+.. +.+++|++||
T Consensus 223 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~--------g~qvlilaPT 293 (630)
T TIGR00643 223 ELLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA--------GYQVALMAPT 293 (630)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc--------CCcEEEECCH
Confidence 455677888999 8999999999999876 368999999999999999999887754 6679999999
Q ss_pred HHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHh---HHHHh-cCCcEEEEccHHHHHHHHccccCCCCccEEEEecccc
Q 013176 110 RELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQ---IRDLR-RGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADR 185 (448)
Q Consensus 110 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~ 185 (448)
++|+.|+++.++++....++++..++|+.+..+. ...+. ..++|+|+||..+.+ ...+.+++++|+||+|+
T Consensus 294 ~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVIDEaH~ 368 (630)
T TIGR00643 294 EILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIIDEQHR 368 (630)
T ss_pred HHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEechhh
Confidence 9999999999999988889999999998776543 33333 357999999987743 34567899999999998
Q ss_pred cccCCCHHHHHHHHHHcC--CCcceEEEeccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceEEEEecchhHHHHHH
Q 013176 186 MLDMGFEPQIRKIVTQIR--PDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLI 263 (448)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~--~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 263 (448)
+... ....+..... ...++++||||+.+....+. ..++.....+...... ...+.... ..... ...+.
T Consensus 369 fg~~----qr~~l~~~~~~~~~~~~l~~SATp~prtl~l~--~~~~l~~~~i~~~p~~-r~~i~~~~--~~~~~-~~~~~ 438 (630)
T TIGR00643 369 FGVE----QRKKLREKGQGGFTPHVLVMSATPIPRTLALT--VYGDLDTSIIDELPPG-RKPITTVL--IKHDE-KDIVY 438 (630)
T ss_pred ccHH----HHHHHHHhcccCCCCCEEEEeCCCCcHHHHHH--hcCCcceeeeccCCCC-CCceEEEE--eCcch-HHHHH
Confidence 5322 1122222222 26789999999876543332 2222221111111111 11122221 12222 23444
Q ss_pred HHHHh-hhcCCcEEEEecch--------hHHHHHHHHHHhC--CCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccc
Q 013176 264 KLLKE-VMDGSRILIFTETK--------KGCDQVTRQLRMD--GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVA 332 (448)
Q Consensus 264 ~~l~~-~~~~~k~lVf~~~~--------~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~ 332 (448)
..+.+ ...+.+++|||+.+ ..+..+++.|++. +.++..+||+|+.++|..+++.|++|+.+|||||+++
T Consensus 439 ~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vi 518 (630)
T TIGR00643 439 EFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVI 518 (630)
T ss_pred HHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcee
Confidence 44443 34577999999876 4566777777753 6789999999999999999999999999999999999
Q ss_pred cCCCCCCCccEEEEcCCCC-ChhhhhhcccccCCCCCCceEEEEecCCChHHHHHHHHHHHHhCCCCcHHHHhhhhhcCC
Q 013176 333 ARGLDVKDIKCVVNYDFPT-SLEDYVHRIGRTGRAGARGTAFTFFTHSNAKFARDLIKILQEAGQIVSPALSGLARSAAP 411 (448)
Q Consensus 333 ~~Gidi~~~~~Vi~~~~p~-s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~ 411 (448)
++|+|+|++++||+++.|. +..+|.|++||+||.|.+|.|++++.....+.....++.+.+....+.-...++..++.|
T Consensus 519 e~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~~~~~~~~~~rl~~~~~~~dgf~iae~dl~~Rg~g 598 (630)
T TIGR00643 519 EVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYKNPKSESAKKRLRVMADTLDGFVIAEEDLELRGPG 598 (630)
T ss_pred ecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEECCCCCHHHHHHHHHHHhhcccHHHHHHHHhcCCCc
Confidence 9999999999999999986 788999999999999999999999844444444455567777666666566666654443
Q ss_pred CC
Q 013176 412 SF 413 (448)
Q Consensus 412 ~~ 413 (448)
..
T Consensus 599 ~~ 600 (630)
T TIGR00643 599 DL 600 (630)
T ss_pred cc
Confidence 33
No 50
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=1.6e-43 Score=360.46 Aligned_cols=331 Identities=21% Similarity=0.291 Sum_probs=249.3
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEc
Q 013176 28 IFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLA 107 (448)
Q Consensus 28 ~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~ 107 (448)
.|+++++++.+.+.+...+| +++++|.++++.+.+++++++++|||||||+++.++++..+.. +.+++|++
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~-~l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~--------~~k~v~i~ 72 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDF-ELYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA--------GLKSIYIV 72 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCC-CCCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh--------CCcEEEEe
Confidence 57889999999999999999 5999999999999999999999999999999999999887754 45799999
Q ss_pred CcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccc
Q 013176 108 PTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRML 187 (448)
Q Consensus 108 P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~ 187 (448)
|+++|+.|+.+.++++. ..+.++...+|+...... ....++|+|+||+++..++.+....+.+++++|+||+|.+.
T Consensus 73 P~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~ 148 (674)
T PRK01172 73 PLRSLAMEKYEELSRLR-SLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIG 148 (674)
T ss_pred chHHHHHHHHHHHHHHh-hcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhcc
Confidence 99999999999998864 357888888887654332 23467999999999988887766668889999999999998
Q ss_pred cCCCHHHHHHHHHH---cCCCcceEEEeccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceEEE-----Eec-chhH
Q 013176 188 DMGFEPQIRKIVTQ---IRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVE-----VVT-EAEK 258 (448)
Q Consensus 188 ~~~~~~~~~~~~~~---~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~ 258 (448)
+..++..+..++.. ..++.|++++|||+++. ..+.. ++...... .. . .+..+...+. ... ....
T Consensus 149 d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n~-~~la~-wl~~~~~~--~~-~--r~vpl~~~i~~~~~~~~~~~~~~ 221 (674)
T PRK01172 149 DEDRGPTLETVLSSARYVNPDARILALSATVSNA-NELAQ-WLNASLIK--SN-F--RPVPLKLGILYRKRLILDGYERS 221 (674)
T ss_pred CCCccHHHHHHHHHHHhcCcCCcEEEEeCccCCH-HHHHH-HhCCCccC--CC-C--CCCCeEEEEEecCeeeecccccc
Confidence 87777777766543 45678999999999753 34444 33221100 00 0 0000000000 000 0001
Q ss_pred HHHHHHHHHh-hhcCCcEEEEecchhHHHHHHHHHHhCC-------------------------CCeEEEcCCCCHHHHH
Q 013176 259 YNRLIKLLKE-VMDGSRILIFTETKKGCDQVTRQLRMDG-------------------------WPALSIHGDKNQSERD 312 (448)
Q Consensus 259 ~~~l~~~l~~-~~~~~k~lVf~~~~~~~~~l~~~L~~~~-------------------------~~~~~~~~~~~~~~r~ 312 (448)
...+..++.+ ...++++||||++++.|+.++..|.+.. ..+..+|++++.++|.
T Consensus 222 ~~~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~ 301 (674)
T PRK01172 222 QVDINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRR 301 (674)
T ss_pred cccHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHH
Confidence 1112333433 2357799999999999999998886531 2477899999999999
Q ss_pred HHHHHHhcCCCCEEEEeccccCCCCCCCccEEEEcCC---------CCChhhhhhcccccCCCCC--CceEEEEecCC
Q 013176 313 WVLAEFRSGRSPIMTATDVAARGLDVKDIKCVVNYDF---------PTSLEDYVHRIGRTGRAGA--RGTAFTFFTHS 379 (448)
Q Consensus 313 ~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~Vi~~~~---------p~s~~~~~Q~~GR~~R~g~--~g~~~~~~~~~ 379 (448)
.+++.|++|.++|||||+++++|+|+|.. .||+.+. |.+..+|.||+|||||.|. .|.+++++...
T Consensus 302 ~ve~~f~~g~i~VLvaT~~la~Gvnipa~-~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~ 378 (674)
T PRK01172 302 FIEEMFRNRYIKVIVATPTLAAGVNLPAR-LVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASP 378 (674)
T ss_pred HHHHHHHcCCCeEEEecchhhccCCCcce-EEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCc
Confidence 99999999999999999999999999975 4554443 4578899999999999985 45677665543
No 51
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=1.3e-42 Score=344.88 Aligned_cols=321 Identities=20% Similarity=0.215 Sum_probs=241.7
Q ss_pred HHHHHHHH-CCCCCCcHHHHhHHHHhhcCC-cEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHH
Q 013176 37 YCLEVIAK-LGFVEPTPIQAQGWPMALKGR-DLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAV 114 (448)
Q Consensus 37 ~l~~~~~~-~~~~~~~~~Q~~~i~~~~~~~-~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~ 114 (448)
.+.+++.. .||. |+|||.++++.++.|+ ++++.+|||||||.++.++.+.. ... .....++++++||++|+.
T Consensus 3 ~f~~ff~~~~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~~----~~~~~rLv~~vPtReLa~ 76 (844)
T TIGR02621 3 KFDEWYQGLHGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EIG----AKVPRRLVYVVNRRTVVD 76 (844)
T ss_pred hHHHHHHHHhCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-ccc----ccccceEEEeCchHHHHH
Confidence 44555554 7995 9999999999999998 57778999999998765444422 111 112335666889999999
Q ss_pred HHHHHHHHhhcCC-----------------------CceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHcccc-
Q 013176 115 QIQEEALKFGSRA-----------------------GIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHT- 170 (448)
Q Consensus 115 q~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~- 170 (448)
|+++.++++++.+ ++++..++|+.+...++..+..+++|||+|++.+.+ ..+
T Consensus 77 Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~s----r~L~ 152 (844)
T TIGR02621 77 QVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGS----RLLF 152 (844)
T ss_pred HHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcC----Cccc
Confidence 9999999988754 488999999999999999999999999999765533 222
Q ss_pred ---------------CCCCccEEEEecccccccCCCHHHHHHHHHHc--CC---CcceEEEeccCchHHHHHHHHHcCCC
Q 013176 171 ---------------NLRRVTYLVLDEADRMLDMGFEPQIRKIVTQI--RP---DRQTLYWSATWPREVETLARQFLRNP 230 (448)
Q Consensus 171 ---------------~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~--~~---~~~~v~~SAT~~~~~~~~~~~~~~~~ 230 (448)
.+.+++++|+|||| ++.+|...+..+.+.+ ++ +.|+++||||++.++......+..++
T Consensus 153 ~gYg~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p 230 (844)
T TIGR02621 153 SGYGCGFKSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAED 230 (844)
T ss_pred cccccccccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCC
Confidence 25778999999999 6778999999999864 33 26899999999988777777776666
Q ss_pred eEEEeCCcccccccCcceEEEEecchhHHHHHHHHHHhh--hcCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCH
Q 013176 231 YKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKEV--MDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQ 308 (448)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~ 308 (448)
....+.... .....+.+++ ......+...+...+... ..++++||||||++.|+.+++.|++.++ ..+||+|++
T Consensus 231 ~~i~V~~~~-l~a~ki~q~v-~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q 306 (844)
T TIGR02621 231 YKHPVLKKR-LAAKKIVKLV-PPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRG 306 (844)
T ss_pred ceeeccccc-ccccceEEEE-ecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCH
Confidence 554443222 1122223332 222333443333332211 2457899999999999999999998876 899999999
Q ss_pred HHHH-----HHHHHHhc----CC-------CCEEEEeccccCCCCCCCccEEEEcCCCCChhhhhhcccccCCCCCCceE
Q 013176 309 SERD-----WVLAEFRS----GR-------SPIMTATDVAARGLDVKDIKCVVNYDFPTSLEDYVHRIGRTGRAGARGTA 372 (448)
Q Consensus 309 ~~r~-----~~~~~f~~----g~-------~~vLv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~ 372 (448)
.+|. .+++.|++ +. ..|||||+++++|+|++. ++||+...| .++|+||+||++|.|+.+.+
T Consensus 307 ~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~ 383 (844)
T TIGR02621 307 AERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQAC 383 (844)
T ss_pred HHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCc
Confidence 9999 78999986 43 679999999999999986 888887766 48999999999999886433
Q ss_pred -EEEe
Q 013176 373 -FTFF 376 (448)
Q Consensus 373 -~~~~ 376 (448)
+.++
T Consensus 384 ~i~vv 388 (844)
T TIGR02621 384 QIAVV 388 (844)
T ss_pred eEEEE
Confidence 4544
No 52
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=4.9e-42 Score=312.84 Aligned_cols=322 Identities=24% Similarity=0.276 Sum_probs=247.8
Q ss_pred CCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCC
Q 013176 48 VEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRA 127 (448)
Q Consensus 48 ~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~ 127 (448)
-++|.||......++.+ |+|++.|||-|||+++++.+...+... +.++|+++||+.|+.|.++.+.+...-.
T Consensus 14 ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~-------~~kvlfLAPTKPLV~Qh~~~~~~v~~ip 85 (542)
T COG1111 14 IEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWF-------GGKVLFLAPTKPLVLQHAEFCRKVTGIP 85 (542)
T ss_pred ccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhc-------CCeEEEecCCchHHHHHHHHHHHHhCCC
Confidence 38999999999887766 899999999999999999888887774 3389999999999999999999987766
Q ss_pred CceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCCCHHHHHHHHHHcCCCcc
Q 013176 128 GIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQ 207 (448)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~ 207 (448)
.-.+..++|.....+....+ ...+|+|+||+.+.+-+..+..++.+++++||||||+-........+.+......+++.
T Consensus 86 ~~~i~~ltGev~p~~R~~~w-~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~~ 164 (542)
T COG1111 86 EDEIAALTGEVRPEEREELW-AKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNPL 164 (542)
T ss_pred hhheeeecCCCChHHHHHHH-hhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHhccCce
Confidence 66788888888775554444 34589999999999999999999999999999999987655433344443334456778
Q ss_pred eEEEeccCchHHHHHHHH---HcCCCeEEE--------------------------------------------------
Q 013176 208 TLYWSATWPREVETLARQ---FLRNPYKVI-------------------------------------------------- 234 (448)
Q Consensus 208 ~v~~SAT~~~~~~~~~~~---~~~~~~~~~-------------------------------------------------- 234 (448)
+++|||||..+.+.+..- +.-....+.
T Consensus 165 ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~ 244 (542)
T COG1111 165 ILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGV 244 (542)
T ss_pred EEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 999999986543322111 000000000
Q ss_pred --eCCc--------------c--cccccC---------------------------------------------------
Q 013176 235 --IGSL--------------E--LKANQS--------------------------------------------------- 245 (448)
Q Consensus 235 --~~~~--------------~--~~~~~~--------------------------------------------------- 245 (448)
.... . ......
T Consensus 245 ~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l 324 (542)
T COG1111 245 IESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSL 324 (542)
T ss_pred eeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHH
Confidence 0000 0 000000
Q ss_pred ------------cceEEEEecchhHHHHHHHHHHhhhc---CCcEEEEecchhHHHHHHHHHHhCCCCeE--EE------
Q 013176 246 ------------INQVVEVVTEAEKYNRLIKLLKEVMD---GSRILIFTETKKGCDQVTRQLRMDGWPAL--SI------ 302 (448)
Q Consensus 246 ------------~~~~~~~~~~~~~~~~l~~~l~~~~~---~~k~lVf~~~~~~~~~l~~~L~~~~~~~~--~~------ 302 (448)
..........++|++.+.+++++... +.++|||++.+++|+.+.+.|.+.+..+. ++
T Consensus 325 ~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~ 404 (542)
T COG1111 325 LADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASRE 404 (542)
T ss_pred hcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccc
Confidence 00001111234477777788877663 56999999999999999999999877763 33
Q ss_pred -cCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCCCccEEEEcCCCCChhhhhhcccccCCCCCCceEEEEecCC
Q 013176 303 -HGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVKDIKCVVNYDFPTSLEDYVHRIGRTGRAGARGTAFTFFTHS 379 (448)
Q Consensus 303 -~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 379 (448)
..+|+++++.+++++|++|+++|||||++.++|+|+|.++.||+|++-+|+..++||.||+||. +.|.+++++..+
T Consensus 405 ~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~g 481 (542)
T COG1111 405 GDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEG 481 (542)
T ss_pred cccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEecC
Confidence 2479999999999999999999999999999999999999999999999999999999999998 889999999887
No 53
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=4.8e-40 Score=322.22 Aligned_cols=351 Identities=14% Similarity=0.164 Sum_probs=238.9
Q ss_pred HHHHHHHhcCCeEEecCCCCCcccccccCCCCHHHHHHHHHCC--CCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHH
Q 013176 4 TEVKMYRARREITVEGHDVPRPIRIFQEANFPDYCLEVIAKLG--FVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSY 81 (448)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~~--~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~ 81 (448)
..+..+.....+.++-.+...+...+....+.+++.+....-+ ...|+++|.++++.++.+++.++++|||+|||+++
T Consensus 67 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~ 146 (501)
T PHA02558 67 GQLKKFAKNRGYSIWVDPRIEENEDISREDFDEWVSSLEIYSGNKKIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQ 146 (501)
T ss_pred HHHHHHHHhcCCeEecCcccccCCCCCHHHHHhHhhhcccccCCCcCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHH
Confidence 3456667777776654322222222222233333333332222 34899999999999999999999999999999876
Q ss_pred HHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHH
Q 013176 82 LLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRL 161 (448)
Q Consensus 82 ~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l 161 (448)
...+ ...... ...++||++||++|+.||.+.++++.......+..+.++.... ...+|+|+|++++
T Consensus 147 ~~l~-~~~~~~------~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~i~~g~~~~-------~~~~I~VaT~qsl 212 (501)
T PHA02558 147 YLLS-RYYLEN------YEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHKIYSGTAKD-------TDAPIVVSTWQSA 212 (501)
T ss_pred HHHH-HHHHhc------CCCeEEEEECcHHHHHHHHHHHHHhccccccceeEEecCcccC-------CCCCEEEeeHHHH
Confidence 5432 222221 1347999999999999999999998754444555566665432 3478999999998
Q ss_pred HHHHHccccCCCCccEEEEecccccccCCCHHHHHHHHHHcCCCcceEEEeccCchHHHHHH--HHHcCCCeEEEeCCcc
Q 013176 162 IDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLA--RQFLRNPYKVIIGSLE 239 (448)
Q Consensus 162 ~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~--~~~~~~~~~~~~~~~~ 239 (448)
.+... ..+.++++||+||||++... .+..++..+++..+++++|||+........ ..+++. ........+
T Consensus 213 ~~~~~---~~~~~~~~iIvDEaH~~~~~----~~~~il~~~~~~~~~lGLTATp~~~~~~~~~~~~~fG~-i~~~v~~~~ 284 (501)
T PHA02558 213 VKQPK---EWFDQFGMVIVDECHLFTGK----SLTSIITKLDNCKFKFGLTGSLRDGKANILQYVGLFGD-IFKPVTTSQ 284 (501)
T ss_pred hhchh---hhccccCEEEEEchhcccch----hHHHHHHhhhccceEEEEeccCCCccccHHHHHHhhCC-ceEEecHHH
Confidence 75432 24678999999999998653 455666666667789999999865322111 112221 111110000
Q ss_pred ccc------------------c--c-----CcceEE-EEecchhHHHHHHHHHHhhh-cCCcEEEEecchhHHHHHHHHH
Q 013176 240 LKA------------------N--Q-----SINQVV-EVVTEAEKYNRLIKLLKEVM-DGSRILIFTETKKGCDQVTRQL 292 (448)
Q Consensus 240 ~~~------------------~--~-----~~~~~~-~~~~~~~~~~~l~~~l~~~~-~~~k~lVf~~~~~~~~~l~~~L 292 (448)
... . . ...... .......+...+..++.... .+.+++|||.++++++.+++.|
T Consensus 285 li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L 364 (501)
T PHA02558 285 LMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEML 364 (501)
T ss_pred HHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHH
Confidence 000 0 0 000000 00111223333444443332 4678999999999999999999
Q ss_pred HhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEe-ccccCCCCCCCccEEEEcCCCCChhhhhhcccccCCCCCCce
Q 013176 293 RMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTAT-DVAARGLDVKDIKCVVNYDFPTSLEDYVHRIGRTGRAGARGT 371 (448)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T-~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~ 371 (448)
++.+.++..+||+++.++|..+++.|++|+..||||| +++++|+|+|++++||++.++.|...|+|++||++|.+..+.
T Consensus 365 ~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~ 444 (501)
T PHA02558 365 KKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKS 444 (501)
T ss_pred HHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCCc
Confidence 9999999999999999999999999999999999998 899999999999999999999999999999999999876554
Q ss_pred EEEEe
Q 013176 372 AFTFF 376 (448)
Q Consensus 372 ~~~~~ 376 (448)
...++
T Consensus 445 ~~~i~ 449 (501)
T PHA02558 445 IATVW 449 (501)
T ss_pred eEEEE
Confidence 43343
No 54
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=3.5e-39 Score=306.69 Aligned_cols=354 Identities=22% Similarity=0.288 Sum_probs=282.5
Q ss_pred HHHHHHHHCCCCCCcHHHHhHHHHhhcC------CcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcH
Q 013176 37 YCLEVIAKLGFVEPTPIQAQGWPMALKG------RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTR 110 (448)
Q Consensus 37 ~l~~~~~~~~~~~~~~~Q~~~i~~~~~~------~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~ 110 (448)
.+.+.+..++| +|+..|++++..|... .+-+++++.|||||++++++++..+.. +.++.+.+||.
T Consensus 251 l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~--------G~Q~ALMAPTE 321 (677)
T COG1200 251 LLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA--------GYQAALMAPTE 321 (677)
T ss_pred HHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc--------CCeeEEeccHH
Confidence 35566688999 9999999999999865 378999999999999999999988776 78899999999
Q ss_pred HHHHHHHHHHHHhhcCCCceEEEEEcCCCchHh---HHHHhcC-CcEEEEccHHHHHHHHccccCCCCccEEEEeccccc
Q 013176 111 ELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQ---IRDLRRG-VEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRM 186 (448)
Q Consensus 111 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~ 186 (448)
-||+|.++.+.++....++++..++|....... ...+.++ .+|+|+|+ .+....+.+.++.++|+||-|+
T Consensus 322 ILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTH-----ALiQd~V~F~~LgLVIiDEQHR- 395 (677)
T COG1200 322 ILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTH-----ALIQDKVEFHNLGLVIIDEQHR- 395 (677)
T ss_pred HHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcc-----hhhhcceeecceeEEEEecccc-
Confidence 999999999999999999999999998765443 3344444 89999995 4445567788999999999999
Q ss_pred ccCCCHHHHHHHHHHcCC-CcceEEEeccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceEEEEecchhHHHHHH-H
Q 013176 187 LDMGFEPQIRKIVTQIRP-DRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLI-K 264 (448)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~-~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~ 264 (448)
|+-.-+..+..-.. .++++.|||||.|.. ++-..+++.....+...+ .....+....-..+....+. .
T Consensus 396 ----FGV~QR~~L~~KG~~~Ph~LvMTATPIPRT--LAlt~fgDldvS~IdElP----~GRkpI~T~~i~~~~~~~v~e~ 465 (677)
T COG1200 396 ----FGVHQRLALREKGEQNPHVLVMTATPIPRT--LALTAFGDLDVSIIDELP----PGRKPITTVVIPHERRPEVYER 465 (677)
T ss_pred ----ccHHHHHHHHHhCCCCCcEEEEeCCCchHH--HHHHHhccccchhhccCC----CCCCceEEEEeccccHHHHHHH
Confidence 78777777777666 689999999998764 444455554444443322 22222323322333333444 3
Q ss_pred HHHhhhcCCcEEEEecchhH--------HHHHHHHHHhC--CCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccC
Q 013176 265 LLKEVMDGSRILIFTETKKG--------CDQVTRQLRMD--GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAAR 334 (448)
Q Consensus 265 ~l~~~~~~~k~lVf~~~~~~--------~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~ 334 (448)
+.++...+.++.|.|+-+++ |..+++.|+.. +.++.++||.|+.+++++++++|++|+.+|||||.+++.
T Consensus 466 i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEV 545 (677)
T COG1200 466 IREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEV 545 (677)
T ss_pred HHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEe
Confidence 44556678899999988764 55667777754 567999999999999999999999999999999999999
Q ss_pred CCCCCCccEEEEcCCCC-ChhhhhhcccccCCCCCCceEEEEecCCChHHHHHHHHHHHHhCCCCcHHHHhhhhhcCCCC
Q 013176 335 GLDVKDIKCVVNYDFPT-SLEDYVHRIGRTGRAGARGTAFTFFTHSNAKFARDLIKILQEAGQIVSPALSGLARSAAPSF 413 (448)
Q Consensus 335 Gidi~~~~~Vi~~~~p~-s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~ 413 (448)
|||+|+.+++|+.++-. ..+++.|..||+||-+.++.|++++.+...+..+..++.+.+...-+.-.=.++.-+++|..
T Consensus 546 GVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~~~~a~~RL~im~~t~DGF~IAE~DLklRGpGe~ 625 (677)
T COG1200 546 GVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPLSEVAKQRLKIMRETTDGFVIAEEDLKLRGPGEL 625 (677)
T ss_pred cccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCCChhHHHHHHHHHhcCCcceehhhhHhccCCccc
Confidence 99999999999999765 99999999999999999999999999888777778889999998888877777776555555
Q ss_pred CC
Q 013176 414 GG 415 (448)
Q Consensus 414 ~~ 415 (448)
-|
T Consensus 626 lG 627 (677)
T COG1200 626 LG 627 (677)
T ss_pred cC
Confidence 33
No 55
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=1.1e-39 Score=342.00 Aligned_cols=295 Identities=23% Similarity=0.296 Sum_probs=219.9
Q ss_pred EEcCCCChHHHHHHHHHHHHhhcCCCc-----cCCCCceEEEEcCcHHHHHHHHHHHHHhh------------cCCCceE
Q 013176 69 GIAETGSGKTLSYLLPAFVHVSAQPRL-----VQGEGPIVLVLAPTRELAVQIQEEALKFG------------SRAGIRS 131 (448)
Q Consensus 69 v~~~tGsGKT~~~~l~~l~~~~~~~~~-----~~~~~~~vlil~P~~~L~~q~~~~~~~~~------------~~~~~~~ 131 (448)
|++|||||||++|.+|++..+..+... ....+.++|||+|+++|+.|+.+.++... ...++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 579999999999999999988754211 11236789999999999999999887421 1246889
Q ss_pred EEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHcc-ccCCCCccEEEEecccccccCCCH----HHHHHHHHHcCCCc
Q 013176 132 TCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQ-HTNLRRVTYLVLDEADRMLDMGFE----PQIRKIVTQIRPDR 206 (448)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~-~~~~~~~~~iIvDE~h~~~~~~~~----~~~~~~~~~~~~~~ 206 (448)
...+|+.+..+....+.+.++|+|+||++|..++.+. ...++++++|||||+|.+.+..++ ..+.++...++.+.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 9999999887777777778999999999998876543 346889999999999999875433 34555555556778
Q ss_pred ceEEEeccCchHHHHHHHHHcCC-CeEEEeCCcccccccCcceEEEEecc------------------h-hHHHHH-HHH
Q 013176 207 QTLYWSATWPREVETLARQFLRN-PYKVIIGSLELKANQSINQVVEVVTE------------------A-EKYNRL-IKL 265 (448)
Q Consensus 207 ~~v~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~-~~~~~l-~~~ 265 (448)
|+|++|||+.+ .+.+...+... +..+.. . .......+...+...+. . .....+ ..+
T Consensus 161 QrIgLSATI~n-~eevA~~L~g~~pv~Iv~-~-~~~r~~~l~v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~i 237 (1490)
T PRK09751 161 QRIGLSATVRS-ASDVAAFLGGDRPVTVVN-P-PAMRHPQIRIVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGI 237 (1490)
T ss_pred eEEEEEeeCCC-HHHHHHHhcCCCCEEEEC-C-CCCcccceEEEEecCchhhccccccccccccchhhhhhhhHHHHHHH
Confidence 99999999986 34555444332 333322 1 11111112211111000 0 000111 234
Q ss_pred HHhhhcCCcEEEEecchhHHHHHHHHHHhCC---------------------------------CCeEEEcCCCCHHHHH
Q 013176 266 LKEVMDGSRILIFTETKKGCDQVTRQLRMDG---------------------------------WPALSIHGDKNQSERD 312 (448)
Q Consensus 266 l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~~---------------------------------~~~~~~~~~~~~~~r~ 312 (448)
+.....+.++||||||+..|+.++..|++.. ..+..+||++++++|.
T Consensus 238 l~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~ 317 (1490)
T PRK09751 238 LDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRA 317 (1490)
T ss_pred HHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHH
Confidence 4444457789999999999999999997531 1256789999999999
Q ss_pred HHHHHHhcCCCCEEEEeccccCCCCCCCccEEEEcCCCCChhhhhhcccccCCC
Q 013176 313 WVLAEFRSGRSPIMTATDVAARGLDVKDIKCVVNYDFPTSLEDYVHRIGRTGRA 366 (448)
Q Consensus 313 ~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~ 366 (448)
.+++.|++|++++||||+.++.|||++++++||+++.|.++.+|+||+||+||.
T Consensus 318 ~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~ 371 (1490)
T PRK09751 318 ITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ 371 (1490)
T ss_pred HHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC
Confidence 999999999999999999999999999999999999999999999999999996
No 56
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.7e-42 Score=283.85 Aligned_cols=333 Identities=27% Similarity=0.479 Sum_probs=284.1
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEc
Q 013176 28 IFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLA 107 (448)
Q Consensus 28 ~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~ 107 (448)
-|.++-|.|+++.++-.+||.+|+.+|.++||...-|.++++.|..|.|||.+|+++-++++..-. ....++++|
T Consensus 43 gfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~-----g~vsvlvmc 117 (387)
T KOG0329|consen 43 GFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVD-----GQVSVLVMC 117 (387)
T ss_pred chhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCC-----CeEEEEEEe
Confidence 467788999999999999999999999999999999999999999999999999999998876542 256789999
Q ss_pred CcHHHHHHHHHHHHHhhcCC-CceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEeccccc
Q 013176 108 PTRELAVQIQEEALKFGSRA-GIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRM 186 (448)
Q Consensus 108 P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~ 186 (448)
.|++||-|+..+..+|.+.. .+++..++||.+.......++..++|+|+||++++.+..+..+++.++..+|+|||+.+
T Consensus 118 htrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkm 197 (387)
T KOG0329|consen 118 HTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKM 197 (387)
T ss_pred ccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHH
Confidence 99999999999998887755 58999999999998888888889999999999999999999999999999999999988
Q ss_pred ccC-CCHHHHHHHHHHcCCCcceEEEeccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceEEEEecchhHHHHHHHH
Q 013176 187 LDM-GFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKL 265 (448)
Q Consensus 187 ~~~-~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 265 (448)
+.+ ..+..+.++.+.-+...|++.+|||++.++...+..++.+|.++.......-.-..+.+++....+.+|...+.++
T Consensus 198 le~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKNrkl~dL 277 (387)
T KOG0329|consen 198 LEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENEKNRKLNDL 277 (387)
T ss_pred HHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhhhhhhhhhh
Confidence 764 3678888999988999999999999999999999999999999888766655566677777777888888888888
Q ss_pred HHhhhcCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCCCccEEE
Q 013176 266 LKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVKDIKCVV 345 (448)
Q Consensus 266 l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~Vi 345 (448)
|.... -.+++||+.+.... + | +.+ +|+|+.+++|+|+..++.++
T Consensus 278 Ld~Le-FNQVvIFvKsv~Rl---------------------~----------f---~kr-~vat~lfgrgmdiervNi~~ 321 (387)
T KOG0329|consen 278 LDVLE-FNQVVIFVKSVQRL---------------------S----------F---QKR-LVATDLFGRGMDIERVNIVF 321 (387)
T ss_pred hhhhh-hcceeEeeehhhhh---------------------h----------h---hhh-hHHhhhhccccCcccceeee
Confidence 87643 34699999887651 0 3 223 89999999999999999999
Q ss_pred EcCCCCChhhhhhcccccCCCCCCceEEEEecCC-ChHHHHHHHHHHHHhCCCCcHH
Q 013176 346 NYDFPTSLEDYVHRIGRTGRAGARGTAFTFFTHS-NAKFARDLIKILQEAGQIVSPA 401 (448)
Q Consensus 346 ~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~ 401 (448)
+||.|.+..+|+||+||+||.|..|.++.|++.. +.+.++.+.+-..-....+++.
T Consensus 322 NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdRf~v~i~eLpde 378 (387)
T KOG0329|consen 322 NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDRFEVNIKELPDE 378 (387)
T ss_pred ccCCCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHhhhccHhhcCcc
Confidence 9999999999999999999999999999998765 4445555555444333344433
No 57
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=2.7e-40 Score=293.62 Aligned_cols=331 Identities=21% Similarity=0.307 Sum_probs=247.5
Q ss_pred HHHHHHHH-CCCCC-CcHHHHhHHHHhhcC-CcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHH
Q 013176 37 YCLEVIAK-LGFVE-PTPIQAQGWPMALKG-RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELA 113 (448)
Q Consensus 37 ~l~~~~~~-~~~~~-~~~~Q~~~i~~~~~~-~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~ 113 (448)
.+.++|++ +|+.. -++.|+.|+..+.++ +++.|++|||+||++||.+|++.+ +...||+.|..+|.
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~-----------~gITIV~SPLiALI 74 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH-----------GGITIVISPLIALI 74 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh-----------CCeEEEehHHHHHH
Confidence 35566765 67754 478999999988876 699999999999999999999987 55789999999999
Q ss_pred HHHHHHHHHhhcCCCceEEEEEcCCCchHhH------HHHhcCCcEEEEccHHHHHHHH----ccccCCCCccEEEEecc
Q 013176 114 VQIQEEALKFGSRAGIRSTCIYGGAPKGPQI------RDLRRGVEIVIATPGRLIDMLE----AQHTNLRRVTYLVLDEA 183 (448)
Q Consensus 114 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~iiv~T~~~l~~~~~----~~~~~~~~~~~iIvDE~ 183 (448)
.++.+-+.++ .+.+..+.+..+..+.. ...+....+++.||++-..-.. +...+-.-+.+++|||+
T Consensus 75 kDQiDHL~~L----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEA 150 (641)
T KOG0352|consen 75 KDQIDHLKRL----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEA 150 (641)
T ss_pred HHHHHHHHhc----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechh
Confidence 9999988885 44454454444433322 2223457899999997533222 22223344789999999
Q ss_pred cccccCC--CHHHHHHHH--HHcCCCcceEEEeccCchHHHHHHH--HHcCCCeEEEeCCcccccccCcceEEEEecchh
Q 013176 184 DRMLDMG--FEPQIRKIV--TQIRPDRQTLYWSATWPREVETLAR--QFLRNPYKVIIGSLELKANQSINQVVEVVTEAE 257 (448)
Q Consensus 184 h~~~~~~--~~~~~~~~~--~~~~~~~~~v~~SAT~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (448)
|++++|+ |++.+..+- +...++...+.+|||..+.+++.+. ..+.+|+.+...... ....+........-.+
T Consensus 151 HCVSQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~F--R~NLFYD~~~K~~I~D 228 (641)
T KOG0352|consen 151 HCVSQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTF--RDNLFYDNHMKSFITD 228 (641)
T ss_pred hhHhhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcch--hhhhhHHHHHHHHhhh
Confidence 9999998 777766552 2223678899999999988776554 345556554432221 1111111111111223
Q ss_pred HHHHHHHHHHhhhc------------CCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCE
Q 013176 258 KYNRLIKLLKEVMD------------GSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPI 325 (448)
Q Consensus 258 ~~~~l~~~l~~~~~------------~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~v 325 (448)
-+..|.++...... .+-.||||.|++.|+.++-.|...|+++..||.++...+|.++.+.|.+++..|
T Consensus 229 ~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~Pv 308 (641)
T KOG0352|consen 229 CLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPV 308 (641)
T ss_pred HhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCE
Confidence 34445554433221 234799999999999999999999999999999999999999999999999999
Q ss_pred EEEeccccCCCCCCCccEEEEcCCCCChhhhhhcccccCCCCCCceEEEEecCCChHHH
Q 013176 326 MTATDVAARGLDVKDIKCVVNYDFPTSLEDYVHRIGRTGRAGARGTAFTFFTHSNAKFA 384 (448)
Q Consensus 326 Lv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~ 384 (448)
|+||..+++|+|-|+++.||++++|.+++-|.|..||+||+|....|-++++..|...+
T Consensus 309 I~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i 367 (641)
T KOG0352|consen 309 IAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNAL 367 (641)
T ss_pred EEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHH
Confidence 99999999999999999999999999999999999999999999999999987766543
No 58
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=1.2e-39 Score=299.70 Aligned_cols=346 Identities=22% Similarity=0.289 Sum_probs=272.4
Q ss_pred ecCCCCCcccccccCCCCHHHHHHHHHCCCCCCcHHHHhHHHH-hhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCcc
Q 013176 18 EGHDVPRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPM-ALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLV 96 (448)
Q Consensus 18 ~~~~~~~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~i~~-~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~ 96 (448)
....--.+....+++++++.+.+.++..|+.++.|+|.-++.+ ++.|+|.+++.+|+||||++.-++-+..+...
T Consensus 185 ~a~~~~~~r~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~---- 260 (830)
T COG1202 185 TAETDEVERVPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSG---- 260 (830)
T ss_pred eccccccccccccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhC----
Confidence 3333334445678899999999999999999999999999976 67889999999999999999999888887763
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhH----HHHhcCCcEEEEccHHHHHHHHccccCC
Q 013176 97 QGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQI----RDLRRGVEIVIATPGRLIDMLEAQHTNL 172 (448)
Q Consensus 97 ~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~iiv~T~~~l~~~~~~~~~~~ 172 (448)
+.+.+++||..+||.|-++.|+.-...+++++..-.|........ ......+||||+|++-+-.++... ..+
T Consensus 261 ---g~KmlfLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~l 336 (830)
T COG1202 261 ---GKKMLFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDL 336 (830)
T ss_pred ---CCeEEEEehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-Ccc
Confidence 778999999999999999999876677888887777754433221 122345899999999995555554 778
Q ss_pred CCccEEEEecccccccCCCHHHHHHHH---HHcCCCcceEEEeccCchHHHHHHHHHcCCCeEEEeCCcccccccCcc-e
Q 013176 173 RRVTYLVLDEADRMLDMGFEPQIRKIV---TQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSIN-Q 248 (448)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~~~~~~~~~~---~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 248 (448)
.+++.+||||+|.+.+...+..+.-++ +.+-+..|++++|||..+. +.++..+..+.+.+.- .+..+. +
T Consensus 337 gdiGtVVIDEiHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp-~elA~~l~a~lV~y~~------RPVplErH 409 (830)
T COG1202 337 GDIGTVVIDEIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNP-EELAKKLGAKLVLYDE------RPVPLERH 409 (830)
T ss_pred cccceEEeeeeeeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCCh-HHHHHHhCCeeEeecC------CCCChhHe
Confidence 999999999999988866555555443 3445789999999998654 4566666555554432 222333 3
Q ss_pred EEEEecchhHHHHHHHHHHhhhc-------CCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcC
Q 013176 249 VVEVVTEAEKYNRLIKLLKEVMD-------GSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSG 321 (448)
Q Consensus 249 ~~~~~~~~~~~~~l~~~l~~~~~-------~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g 321 (448)
.+...+..+|.+.+..+++.-.. .+++|||++++..|+.+++.|...|+++..||++++..+|..+...|.++
T Consensus 410 lvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q 489 (830)
T COG1202 410 LVFARNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQ 489 (830)
T ss_pred eeeecCchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcC
Confidence 34444577888888777764332 34899999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeccccCCCCCCCccEEEEc----CCCC-ChhhhhhcccccCCCCC--CceEEEEecCC
Q 013176 322 RSPIMTATDVAARGLDVKDIKCVVNY----DFPT-SLEDYVHRIGRTGRAGA--RGTAFTFFTHS 379 (448)
Q Consensus 322 ~~~vLv~T~~~~~Gidi~~~~~Vi~~----~~p~-s~~~~~Q~~GR~~R~g~--~g~~~~~~~~~ 379 (448)
++.++|+|.+++.|+|+|. +.||+- +.-| |+.+|.|+.|||||-+- .|++++++.+.
T Consensus 490 ~l~~VVTTAAL~AGVDFPA-SQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 490 ELAAVVTTAALAAGVDFPA-SQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred CcceEeehhhhhcCCCCch-HHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 9999999999999999995 444433 3344 89999999999999754 57777777653
No 59
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=3.2e-38 Score=330.20 Aligned_cols=290 Identities=23% Similarity=0.329 Sum_probs=217.4
Q ss_pred HHHHHH-CCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHH
Q 013176 39 LEVIAK-LGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQ 117 (448)
Q Consensus 39 ~~~~~~-~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~ 117 (448)
.+.++. .|+ .|+++|+++++.++.++++++++|||+|||. +.++++..+.. .+.+++|++||++|+.|+.
T Consensus 70 ~~~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~-------~g~~alIL~PTreLa~Qi~ 140 (1176)
T PRK09401 70 EKFFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK-------KGKKSYIIFPTRLLVEQVV 140 (1176)
T ss_pred HHHHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh-------cCCeEEEEeccHHHHHHHH
Confidence 344533 588 8999999999999999999999999999996 44444444332 2678999999999999999
Q ss_pred HHHHHhhcCCCceEEEEEcCCCc-----hHhHHHHh-cCCcEEEEccHHHHHHHHccccCCCCccEEEEeccccccc---
Q 013176 118 EEALKFGSRAGIRSTCIYGGAPK-----GPQIRDLR-RGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLD--- 188 (448)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~--- 188 (448)
+.++.++...++.+..+.++... ......+. ..++|+|+||++|.+.+. ......++++|+||||++++
T Consensus 141 ~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~~k 218 (1176)
T PRK09401 141 EKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKSSK 218 (1176)
T ss_pred HHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhccc
Confidence 99999988888887777766432 22333444 358999999999998776 34456699999999999986
Q ss_pred --------CCCH-HHHHHHHHHcCC------------------------CcceEEEeccCchHHHHHHHHHcCCCeEEEe
Q 013176 189 --------MGFE-PQIRKIVTQIRP------------------------DRQTLYWSATWPREVETLARQFLRNPYKVII 235 (448)
Q Consensus 189 --------~~~~-~~~~~~~~~~~~------------------------~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~ 235 (448)
.+|. ..+..++..++. ..|++++|||+++.... ..++.+...+.+
T Consensus 219 ~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~--~~l~~~ll~~~v 296 (1176)
T PRK09401 219 NIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNR--VKLFRELLGFEV 296 (1176)
T ss_pred chhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchH--HHHhhccceEEe
Confidence 4563 456666655543 67899999999864221 122333333333
Q ss_pred CCcccccccCcceEEEEecchhHHHHHHHHHHhhhcCCcEEEEecchhH---HHHHHHHHHhCCCCeEEEcCCCCHHHHH
Q 013176 236 GSLELKANQSINQVVEVVTEAEKYNRLIKLLKEVMDGSRILIFTETKKG---CDQVTRQLRMDGWPALSIHGDKNQSERD 312 (448)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~k~lVf~~~~~~---~~~l~~~L~~~~~~~~~~~~~~~~~~r~ 312 (448)
.... .....+.+.+.... ++...+.++++.. +.++||||++... ++.+++.|+..|+++..+||++ .
T Consensus 297 ~~~~-~~~rnI~~~yi~~~--~k~~~L~~ll~~l--~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~ 366 (1176)
T PRK09401 297 GSPV-FYLRNIVDSYIVDE--DSVEKLVELVKRL--GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----E 366 (1176)
T ss_pred cCcc-cccCCceEEEEEcc--cHHHHHHHHHHhc--CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----H
Confidence 3322 22233444443332 5666777777653 3579999999877 9999999999999999999999 2
Q ss_pred HHHHHHhcCCCCEEEE----eccccCCCCCCC-ccEEEEcCCCC
Q 013176 313 WVLAEFRSGRSPIMTA----TDVAARGLDVKD-IKCVVNYDFPT 351 (448)
Q Consensus 313 ~~~~~f~~g~~~vLv~----T~~~~~Gidi~~-~~~Vi~~~~p~ 351 (448)
..+++|++|+++|||| |+++++|+|+|+ +++||+|+.|.
T Consensus 367 ~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~ 410 (1176)
T PRK09401 367 RKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPK 410 (1176)
T ss_pred HHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCC
Confidence 2459999999999999 589999999999 89999999885
No 60
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=5.2e-38 Score=310.72 Aligned_cols=312 Identities=20% Similarity=0.238 Sum_probs=225.5
Q ss_pred cHHHHhHHHHhhcCCcEEEEcCCCChHHHH---------HHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHH
Q 013176 51 TPIQAQGWPMALKGRDLIGIAETGSGKTLS---------YLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEAL 121 (448)
Q Consensus 51 ~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~---------~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~ 121 (448)
-.+|+++++.+.++++++++|+||+|||.+ |+++.+..+..-. ......++++++||++|+.|+...+.
T Consensus 166 ~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~--~~~~~~~ilvt~PrreLa~qi~~~i~ 243 (675)
T PHA02653 166 PDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKID--PNFIERPIVLSLPRVALVRLHSITLL 243 (675)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcc--cccCCcEEEEECcHHHHHHHHHHHHH
Confidence 448999999999999999999999999986 3333444332110 01235689999999999999999987
Q ss_pred HhhcC---CCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCCCHHHHHHH
Q 013176 122 KFGSR---AGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKI 198 (448)
Q Consensus 122 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~ 198 (448)
+.... .+..+...+|+... ..........+|+|+|+... ...+.++++||+||||.+...+ ..+..+
T Consensus 244 ~~vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L~-------l~~L~~v~~VVIDEaHEr~~~~--DllL~l 313 (675)
T PHA02653 244 KSLGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKLT-------LNKLFDYGTVIIDEVHEHDQIG--DIIIAV 313 (675)
T ss_pred HHhCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCccc-------ccccccCCEEEccccccCccch--hHHHHH
Confidence 65433 35667788888763 22222333678999996421 1246789999999999987754 334444
Q ss_pred HHHc-CCCcceEEEeccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceEEEEecc---------hhHHHHHHHHHHh
Q 013176 199 VTQI-RPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTE---------AEKYNRLIKLLKE 268 (448)
Q Consensus 199 ~~~~-~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~~~l~~ 268 (448)
+... +..+|+++||||++.+.+.+ ..++.++..+.+... ....+.+.+..... ......+...+..
T Consensus 314 lk~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~gr---t~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~ 389 (675)
T PHA02653 314 ARKHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPGG---TLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKK 389 (675)
T ss_pred HHHhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCCC---cCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHH
Confidence 4333 23358999999998887766 567777776665421 11222332221110 1111223333332
Q ss_pred hh--cCCcEEEEecchhHHHHHHHHHHhC--CCCeEEEcCCCCHHHHHHHHHHH-hcCCCCEEEEeccccCCCCCCCccE
Q 013176 269 VM--DGSRILIFTETKKGCDQVTRQLRMD--GWPALSIHGDKNQSERDWVLAEF-RSGRSPIMTATDVAARGLDVKDIKC 343 (448)
Q Consensus 269 ~~--~~~k~lVf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f-~~g~~~vLv~T~~~~~Gidi~~~~~ 343 (448)
.. .++++||||+++.+++.+++.|++. ++.+..+||++++. ++.++.| ++|+.+|||||+++++|+|+|++++
T Consensus 390 ~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~ 467 (675)
T PHA02653 390 YTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATH 467 (675)
T ss_pred hhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeE
Confidence 21 3468999999999999999999887 68999999999974 4667777 6899999999999999999999999
Q ss_pred EEEcC---CCC---------ChhhhhhcccccCCCCCCceEEEEecCCCh
Q 013176 344 VVNYD---FPT---------SLEDYVHRIGRTGRAGARGTAFTFFTHSNA 381 (448)
Q Consensus 344 Vi~~~---~p~---------s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 381 (448)
||+++ .|. |.++|.||+||+||. ++|.|+.++++.+.
T Consensus 468 VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~ 516 (675)
T PHA02653 468 VYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLL 516 (675)
T ss_pred EEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHh
Confidence 99998 554 778999999999999 89999999987764
No 61
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=5.1e-38 Score=298.34 Aligned_cols=301 Identities=18% Similarity=0.226 Sum_probs=207.0
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCc-----
Q 013176 66 DLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPK----- 140 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~----- 140 (448)
++++.+|||||||++|+++++..+... ...+++|++|+++|+.|+.+.+..+... .+..+++....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~------~~~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~~~~~~ 71 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQ------KADRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSFKRIKE 71 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhC------CCCeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHHHHHhc
Confidence 478999999999999999999876542 2568999999999999999999987432 23333332221
Q ss_pred -------hHhHHHH------hcCCcEEEEccHHHHHHHHcccc----CC--CCccEEEEecccccccCCCHHHHHHHHHH
Q 013176 141 -------GPQIRDL------RRGVEIVIATPGRLIDMLEAQHT----NL--RRVTYLVLDEADRMLDMGFEPQIRKIVTQ 201 (448)
Q Consensus 141 -------~~~~~~~------~~~~~iiv~T~~~l~~~~~~~~~----~~--~~~~~iIvDE~h~~~~~~~~~~~~~~~~~ 201 (448)
....... ....+|+|+||++++..+..... .+ -..+++|+||+|.+.+..+.. +..++..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~ 150 (358)
T TIGR01587 72 MGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEV 150 (358)
T ss_pred cCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHH
Confidence 0011111 12367999999999887665211 11 123799999999998764333 4444444
Q ss_pred cC-CCcceEEEeccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceEEE-EecchhHHHHHHHHHHhhhcCCcEEEEe
Q 013176 202 IR-PDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVE-VVTEAEKYNRLIKLLKEVMDGSRILIFT 279 (448)
Q Consensus 202 ~~-~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~k~lVf~ 279 (448)
+. .+.|+++||||++..+..+.......+......... ........... ......+...+..+++....++++||||
T Consensus 151 l~~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~ 229 (358)
T TIGR01587 151 LKDNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKE-ERRFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIV 229 (358)
T ss_pred HHHcCCCEEEEecCchHHHHHHHhcCCCcccccCCCCcc-ccccccccceeeccccccCHHHHHHHHHHhhCCCeEEEEE
Confidence 43 568999999999876666555443221111111000 00000111111 1112234455555665555678999999
Q ss_pred cchhHHHHHHHHHHhCCC--CeEEEcCCCCHHHHHH----HHHHHhcCCCCEEEEeccccCCCCCCCccEEEEcCCCCCh
Q 013176 280 ETKKGCDQVTRQLRMDGW--PALSIHGDKNQSERDW----VLAEFRSGRSPIMTATDVAARGLDVKDIKCVVNYDFPTSL 353 (448)
Q Consensus 280 ~~~~~~~~l~~~L~~~~~--~~~~~~~~~~~~~r~~----~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~Vi~~~~p~s~ 353 (448)
+++++|+.+++.|++.+. .+..+||++++.+|.. +++.|++++.++||||+++++|+|++ ++.||++..| +
T Consensus 230 ~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~ 306 (358)
T TIGR01587 230 NTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--I 306 (358)
T ss_pred CCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--H
Confidence 999999999999988765 4899999999999976 48899999999999999999999995 8888888766 5
Q ss_pred hhhhhcccccCCCCCCc----eEEEEecCCC
Q 013176 354 EDYVHRIGRTGRAGARG----TAFTFFTHSN 380 (448)
Q Consensus 354 ~~~~Q~~GR~~R~g~~g----~~~~~~~~~~ 380 (448)
.+|+||+||+||.|+.. .++++....+
T Consensus 307 ~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 307 DSLIQRLGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred HHHHHHhccccCCCCCCCCCCeEEEEeecCC
Confidence 89999999999987643 5566655443
No 62
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=3.9e-38 Score=315.75 Aligned_cols=337 Identities=22% Similarity=0.299 Sum_probs=254.4
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHhHHHHhhcC-CcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEE
Q 013176 28 IFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKG-RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVL 106 (448)
Q Consensus 28 ~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~~~-~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil 106 (448)
..+...+++.+.+.++..++.++++.|++++.....+ +|+++++|||||||++++++++..+.+. +.+++|+
T Consensus 10 ~~~~~~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~-------~~k~vYi 82 (766)
T COG1204 10 ATSKVKLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG-------GGKVVYI 82 (766)
T ss_pred CcccccccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc-------CCcEEEE
Confidence 3344558889999999999999999999999776655 8999999999999999999999998874 5679999
Q ss_pred cCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEeccccc
Q 013176 107 APTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRM 186 (448)
Q Consensus 107 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~ 186 (448)
||+++|+.|.+++++++ ..++++|...+|+..... .....++|+|+|||++-....+....+..+++||+||+|.+
T Consensus 83 vPlkALa~Ek~~~~~~~-~~~GirV~~~TgD~~~~~---~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l 158 (766)
T COG1204 83 VPLKALAEEKYEEFSRL-EELGIRVGISTGDYDLDD---ERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLL 158 (766)
T ss_pred eChHHHHHHHHHHhhhH-HhcCCEEEEecCCcccch---hhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeec
Confidence 99999999999999944 456999999999886544 23456899999999998887777667788999999999998
Q ss_pred ccCCCHHHHHHHHHHcC---CCcceEEEeccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceEEEEecchh------
Q 013176 187 LDMGFEPQIRKIVTQIR---PDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAE------ 257 (448)
Q Consensus 187 ~~~~~~~~~~~~~~~~~---~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 257 (448)
.+...++.+..+..... ...+++++|||+++ ...++..+-.++........+........+.+.......
T Consensus 159 ~d~~RG~~lE~iv~r~~~~~~~~rivgLSATlpN-~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~ 237 (766)
T COG1204 159 GDRTRGPVLESIVARMRRLNELIRIVGLSATLPN-AEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLL 237 (766)
T ss_pred CCcccCceehhHHHHHHhhCcceEEEEEeeecCC-HHHHHHHhCCcccccCCCCcccccCCccceEEEEecCcccccccc
Confidence 88766666666655443 44799999999975 445665554454422222222222222222222222111
Q ss_pred -HHHHHHHHHHhhhcCCcEEEEecchhHHHHHHHHHHhC-------------------------------------CCCe
Q 013176 258 -KYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMD-------------------------------------GWPA 299 (448)
Q Consensus 258 -~~~~l~~~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~-------------------------------------~~~~ 299 (448)
....+...+.....++.+||||+++..+...++.|... ...+
T Consensus 238 ~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~Gv 317 (766)
T COG1204 238 IDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGV 317 (766)
T ss_pred chHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCc
Confidence 13333344445556889999999999999999888720 0125
Q ss_pred EEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCCCccEEE----EcC-----CCCChhhhhhcccccCCCCCC-
Q 013176 300 LSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVKDIKCVV----NYD-----FPTSLEDYVHRIGRTGRAGAR- 369 (448)
Q Consensus 300 ~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~Vi----~~~-----~p~s~~~~~Q~~GR~~R~g~~- 369 (448)
+++|++++.++|..+.+.|+.|.++||+||+.++.|+|+|.-++|| .|+ .+.+.-+++|+.|||||-|-+
T Consensus 318 afHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~ 397 (766)
T COG1204 318 AFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDD 397 (766)
T ss_pred cccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCC
Confidence 6889999999999999999999999999999999999999655444 344 334778999999999998754
Q ss_pred -ceEEEEe
Q 013176 370 -GTAFTFF 376 (448)
Q Consensus 370 -g~~~~~~ 376 (448)
|.++++.
T Consensus 398 ~G~~~i~~ 405 (766)
T COG1204 398 YGEAIILA 405 (766)
T ss_pred CCcEEEEe
Confidence 5556665
No 63
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=9.1e-38 Score=333.29 Aligned_cols=318 Identities=22% Similarity=0.253 Sum_probs=238.7
Q ss_pred HHHHHHHHH-CCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHH
Q 013176 36 DYCLEVIAK-LGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAV 114 (448)
Q Consensus 36 ~~l~~~~~~-~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~ 114 (448)
+++.+.++. +|| +|+++|+++++.+++++++++++|||+|||++++++++.... .+.+++|++||++|+.
T Consensus 66 ~~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~--------~g~~aLVl~PTreLa~ 136 (1638)
T PRK14701 66 EEFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLAL--------KGKKCYIILPTTLLVK 136 (1638)
T ss_pred HHHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHh--------cCCeEEEEECHHHHHH
Confidence 344556665 899 799999999999999999999999999999976665554422 2568999999999999
Q ss_pred HHHHHHHHhhcCC--CceEEEEEcCCCchHhH---HHHhc-CCcEEEEccHHHHHHHHccccCCCCccEEEEeccccccc
Q 013176 115 QIQEEALKFGSRA--GIRSTCIYGGAPKGPQI---RDLRR-GVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLD 188 (448)
Q Consensus 115 q~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~ 188 (448)
|+.+.++.++... ++++..++|+.+..++. ..+.. .++|+|+||+.|.+.+... . ..+++++|+||||++++
T Consensus 137 Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l-~-~~~i~~iVVDEAD~ml~ 214 (1638)
T PRK14701 137 QTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM-K-HLKFDFIFVDDVDAFLK 214 (1638)
T ss_pred HHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH-h-hCCCCEEEEECceeccc
Confidence 9999999987764 46677788887765543 34444 4899999999998766542 1 26789999999999986
Q ss_pred -----------CCCHHHHHH----HHH----------------------HcCCCcc-eEEEeccCchHHHHHHHHHcCCC
Q 013176 189 -----------MGFEPQIRK----IVT----------------------QIRPDRQ-TLYWSATWPREVETLARQFLRNP 230 (448)
Q Consensus 189 -----------~~~~~~~~~----~~~----------------------~~~~~~~-~v~~SAT~~~~~~~~~~~~~~~~ 230 (448)
.+|.+.+.. ++. .+++..+ .+++|||+++.. ....++.++
T Consensus 215 ~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~--~~~~l~~~~ 292 (1638)
T PRK14701 215 ASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKG--DRVKLYREL 292 (1638)
T ss_pred cccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchh--HHHHHhhcC
Confidence 366665543 221 1233445 567899998631 122344555
Q ss_pred eEEEeCCcccccccCcceEEEEecchhHHHHHHHHHHhhhcCCcEEEEecchhH---HHHHHHHHHhCCCCeEEEcCCCC
Q 013176 231 YKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKEVMDGSRILIFTETKKG---CDQVTRQLRMDGWPALSIHGDKN 307 (448)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~k~lVf~~~~~~---~~~l~~~L~~~~~~~~~~~~~~~ 307 (448)
..+.+.... .....+.+.+.......+ ..+.++++.. +..+||||++.+. |+.+++.|.+.|+++..+|++
T Consensus 293 l~f~v~~~~-~~lr~i~~~yi~~~~~~k-~~L~~ll~~~--g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-- 366 (1638)
T PRK14701 293 LGFEVGSGR-SALRNIVDVYLNPEKIIK-EHVRELLKKL--GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-- 366 (1638)
T ss_pred eEEEecCCC-CCCCCcEEEEEECCHHHH-HHHHHHHHhC--CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch--
Confidence 555444332 222334444433333333 5677777654 5689999999875 589999999999999999994
Q ss_pred HHHHHHHHHHHhcCCCCEEEEe----ccccCCCCCCC-ccEEEEcCCCC---Chhhhhhcc-------------cccCCC
Q 013176 308 QSERDWVLAEFRSGRSPIMTAT----DVAARGLDVKD-IKCVVNYDFPT---SLEDYVHRI-------------GRTGRA 366 (448)
Q Consensus 308 ~~~r~~~~~~f~~g~~~vLv~T----~~~~~Gidi~~-~~~Vi~~~~p~---s~~~~~Q~~-------------GR~~R~ 366 (448)
|...+++|++|+.+||||| +++++|||+|+ +++||++|.|. +...|.|.. ||++|.
T Consensus 367 ---R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~ 443 (1638)
T PRK14701 367 ---NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKE 443 (1638)
T ss_pred ---HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhccc
Confidence 8889999999999999999 48899999998 99999999999 888777766 999999
Q ss_pred CCCceEEEE
Q 013176 367 GARGTAFTF 375 (448)
Q Consensus 367 g~~g~~~~~ 375 (448)
|....++..
T Consensus 444 g~~~~~~~~ 452 (1638)
T PRK14701 444 GIPIEGVLD 452 (1638)
T ss_pred CCcchhHHH
Confidence 987776633
No 64
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=1.7e-37 Score=299.48 Aligned_cols=320 Identities=25% Similarity=0.282 Sum_probs=235.1
Q ss_pred CCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCC
Q 013176 49 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAG 128 (448)
Q Consensus 49 ~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~ 128 (448)
.+|.||.+.+..++ ++|++|++|||+|||++++..+..++...+ +.++++++|++-|+.|+.+.+..++..
T Consensus 62 ~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p------~~KiVF~aP~~pLv~QQ~a~~~~~~~~-- 132 (746)
T KOG0354|consen 62 ELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRP------KGKVVFLAPTRPLVNQQIACFSIYLIP-- 132 (746)
T ss_pred cccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCC------cceEEEeeCCchHHHHHHHHHhhccCc--
Confidence 89999999999988 999999999999999999999999988864 478999999999999999888887765
Q ss_pred ceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccC-CCCccEEEEecccccccCC-CHHHHHHHHHHcCCCc
Q 013176 129 IRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTN-LRRVTYLVLDEADRMLDMG-FEPQIRKIVTQIRPDR 206 (448)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~-~~~~~~iIvDE~h~~~~~~-~~~~~~~~~~~~~~~~ 206 (448)
..+....++.........+-...+|+|+||+.+.+-+.+.... ++.|.++||||||+-.... |...++..+..-....
T Consensus 133 ~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~~~~ 212 (746)
T KOG0354|consen 133 YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKNQGN 212 (746)
T ss_pred ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHhhhccc
Confidence 4555566664444444456667899999999998888776554 5889999999999876654 5555556665554555
Q ss_pred ceEEEeccCchHHHHHHHHHcCCCeE------------------------------------------------------
Q 013176 207 QTLYWSATWPREVETLARQFLRNPYK------------------------------------------------------ 232 (448)
Q Consensus 207 ~~v~~SAT~~~~~~~~~~~~~~~~~~------------------------------------------------------ 232 (448)
|++++|||+..+.+........-...
T Consensus 213 qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~l~ 292 (746)
T KOG0354|consen 213 QILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEGLI 292 (746)
T ss_pred cEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcCcc
Confidence 99999999875433221111000000
Q ss_pred ----------EEeCCcccccccC--------------------------cc-----------------------------
Q 013176 233 ----------VIIGSLELKANQS--------------------------IN----------------------------- 247 (448)
Q Consensus 233 ----------~~~~~~~~~~~~~--------------------------~~----------------------------- 247 (448)
............. +.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~~~ 372 (746)
T KOG0354|consen 293 EISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEARL 372 (746)
T ss_pred ccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcchh
Confidence 0000000000000 00
Q ss_pred ------------eE-EEEecchhHHHHHHHHHHhhhc---CCcEEEEecchhHHHHHHHHHHhC---CCCeEEE------
Q 013176 248 ------------QV-VEVVTEAEKYNRLIKLLKEVMD---GSRILIFTETKKGCDQVTRQLRMD---GWPALSI------ 302 (448)
Q Consensus 248 ------------~~-~~~~~~~~~~~~l~~~l~~~~~---~~k~lVf~~~~~~~~~l~~~L~~~---~~~~~~~------ 302 (448)
.. .......++++.+.+.+.+... +.++||||.+++.|..+...|.+. +++...+
T Consensus 373 ~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s 452 (746)
T KOG0354|consen 373 IRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKS 452 (746)
T ss_pred hHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeecccc
Confidence 00 0000112355566666655443 569999999999999999999742 3333333
Q ss_pred --cCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCCCccEEEEcCCCCChhhhhhcccccCCCCCCceEEEEecCC
Q 013176 303 --HGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVKDIKCVVNYDFPTSLEDYVHRIGRTGRAGARGTAFTFFTHS 379 (448)
Q Consensus 303 --~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 379 (448)
..+|++.+..++++.|++|+.+|||||+++++|+|++.|+.||.||...++..++||.|| ||. +.|.++++....
T Consensus 453 ~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~ns~~vll~t~~ 529 (746)
T KOG0354|consen 453 TQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-RNSKCVLLTTGS 529 (746)
T ss_pred ccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc-cCCeEEEEEcch
Confidence 247999999999999999999999999999999999999999999999999999999999 998 778888888733
No 65
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=7.3e-37 Score=306.58 Aligned_cols=359 Identities=21% Similarity=0.241 Sum_probs=283.9
Q ss_pred HHHHHHHHCCCCCCcHHHHhHHHHhhcC------CcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcH
Q 013176 37 YCLEVIAKLGFVEPTPIQAQGWPMALKG------RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTR 110 (448)
Q Consensus 37 ~l~~~~~~~~~~~~~~~Q~~~i~~~~~~------~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~ 110 (448)
+..+....++| +-|+.|..||..+.+. .|-++||..|.|||.+++-+++..+.. +++|.|+|||.
T Consensus 583 ~q~~F~~~FPy-eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~--------GKQVAvLVPTT 653 (1139)
T COG1197 583 WQEEFEASFPY-EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMD--------GKQVAVLVPTT 653 (1139)
T ss_pred HHHHHHhcCCC-cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcC--------CCeEEEEcccH
Confidence 44455567899 8999999999998864 489999999999999999999998877 78999999999
Q ss_pred HHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhH---HHHhc-CCcEEEEccHHHHHHHHccccCCCCccEEEEeccccc
Q 013176 111 ELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQI---RDLRR-GVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRM 186 (448)
Q Consensus 111 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~ 186 (448)
-||+|.++.++.....+++++..+.--.+..++. ..+.. ..||||+|+ .+.+....+.+++++||||-|+
T Consensus 654 lLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTH-----rLL~kdv~FkdLGLlIIDEEqR- 727 (1139)
T COG1197 654 LLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTH-----RLLSKDVKFKDLGLLIIDEEQR- 727 (1139)
T ss_pred HhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEech-----HhhCCCcEEecCCeEEEechhh-
Confidence 9999999999988888899988876655554443 33333 589999994 4445677889999999999999
Q ss_pred ccCCCHHHHHHHHHHcCCCcceEEEeccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceEEEEecchhHHHHHHHHH
Q 013176 187 LDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLL 266 (448)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 266 (448)
|+-.-++-++.++.+..++-|||||.|.+-.+.-.-+++...+.. ++..+..+..+....+..-.=..++
T Consensus 728 ----FGVk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~T------PP~~R~pV~T~V~~~d~~~ireAI~ 797 (1139)
T COG1197 728 ----FGVKHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIAT------PPEDRLPVKTFVSEYDDLLIREAIL 797 (1139)
T ss_pred ----cCccHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccC------CCCCCcceEEEEecCChHHHHHHHH
Confidence 677777778888899999999999988877777666555554432 2223333333333333332333466
Q ss_pred HhhhcCCcEEEEecchhHHHHHHHHHHhC--CCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCCCccEE
Q 013176 267 KEVMDGSRILIFTETKKGCDQVTRQLRMD--GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVKDIKCV 344 (448)
Q Consensus 267 ~~~~~~~k~lVf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~V 344 (448)
++..+++++...+|.++..+.+++.|++. ..++.+.||.|+..+-+.++..|-+|+.+|||||.+++.|||+|+++++
T Consensus 798 REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTi 877 (1139)
T COG1197 798 RELLRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTI 877 (1139)
T ss_pred HHHhcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceE
Confidence 77778999999999999999999999886 5568899999999999999999999999999999999999999999999
Q ss_pred EEcCCCC-ChhhhhhcccccCCCCCCceEEEEecCCC--hHHHHH---HHHHHHHhCCCCcHHHHhhhhhcCCCCCCCCC
Q 013176 345 VNYDFPT-SLEDYVHRIGRTGRAGARGTAFTFFTHSN--AKFARD---LIKILQEAGQIVSPALSGLARSAAPSFGGSGG 418 (448)
Q Consensus 345 i~~~~p~-s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~--~~~~~~---l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~ 418 (448)
|+-+... ..+++.|..||+||..+.+.|+.++.+.. .+...+ .++.+.+.+.-+.-.+.++.-+++|-.=|...
T Consensus 878 IIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~k~lT~~A~kRL~aI~~~~~LGaGf~lA~~DLeIRGaGNlLG~eQ 957 (1139)
T COG1197 878 IIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQKALTEDAEKRLEAIASFTELGAGFKLAMHDLEIRGAGNLLGEEQ 957 (1139)
T ss_pred EEeccccccHHHHHHhccccCCccceEEEEEeecCccccCHHHHHHHHHHHhhhhcCchHHHHhcchhccccccccCccc
Confidence 9998876 99999999999999999999999987531 122222 23333456777888888888766665544443
Q ss_pred CC
Q 013176 419 NF 420 (448)
Q Consensus 419 ~~ 420 (448)
.|
T Consensus 958 SG 959 (1139)
T COG1197 958 SG 959 (1139)
T ss_pred cC
Confidence 33
No 66
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1e-36 Score=296.68 Aligned_cols=321 Identities=22% Similarity=0.246 Sum_probs=244.7
Q ss_pred HCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013176 44 KLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (448)
Q Consensus 44 ~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~ 123 (448)
..|+ .|+++|..+++.+++|+ +..+.||+|||++|++|++..... ++.++|++||++||.|.++++..+
T Consensus 99 ~lg~-~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~--------G~~v~VvTptreLA~qdae~~~~l 167 (656)
T PRK12898 99 VLGQ-RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALA--------GLPVHVITVNDYLAERDAELMRPL 167 (656)
T ss_pred HhCC-CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhc--------CCeEEEEcCcHHHHHHHHHHHHHH
Confidence 4688 89999999999999997 899999999999999999987654 678999999999999999999999
Q ss_pred hcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHH-HHHHHccc-------------------------cCCCCccE
Q 013176 124 GSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRL-IDMLEAQH-------------------------TNLRRVTY 177 (448)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~~~~~~-------------------------~~~~~~~~ 177 (448)
...+++++.+++++.+. +.++....++|+|+|...| ++++.... ...+.+.+
T Consensus 168 ~~~lGlsv~~i~gg~~~--~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~ 245 (656)
T PRK12898 168 YEALGLTVGCVVEDQSP--DERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHF 245 (656)
T ss_pred HhhcCCEEEEEeCCCCH--HHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccce
Confidence 99999999999998753 3455556899999999887 44443221 12355789
Q ss_pred EEEeccccccc-----------CC--C--HHH---HHHHHHHc-------------------------------------
Q 013176 178 LVLDEADRMLD-----------MG--F--EPQ---IRKIVTQI------------------------------------- 202 (448)
Q Consensus 178 iIvDE~h~~~~-----------~~--~--~~~---~~~~~~~~------------------------------------- 202 (448)
.||||+|.++- .. . ... ...+...+
T Consensus 246 aIvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~ 325 (656)
T PRK12898 246 AIVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWR 325 (656)
T ss_pred eEeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcc
Confidence 99999996440 00 0 000 00000000
Q ss_pred -------------------CC-----------------------------------------------------------
Q 013176 203 -------------------RP----------------------------------------------------------- 204 (448)
Q Consensus 203 -------------------~~----------------------------------------------------------- 204 (448)
..
T Consensus 326 ~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~F 405 (656)
T PRK12898 326 GAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFF 405 (656)
T ss_pred cchHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHH
Confidence 00
Q ss_pred --CcceEEEeccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceEEEEecchhHHHHHHHHHHhhh-cCCcEEEEecc
Q 013176 205 --DRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKEVM-DGSRILIFTET 281 (448)
Q Consensus 205 --~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~k~lVf~~~ 281 (448)
..++.+||||.......+...+..++..+ +........ ........+..+|...+.+.+.+.. .+.++||||++
T Consensus 406 r~Y~kl~GmTGTa~~~~~El~~~y~l~vv~I--Pt~kp~~r~-~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t 482 (656)
T PRK12898 406 RRYLRLAGMTGTAREVAGELWSVYGLPVVRI--PTNRPSQRR-HLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRS 482 (656)
T ss_pred HhhHHHhcccCcChHHHHHHHHHHCCCeEEe--CCCCCccce-ecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 01667899998877666666665554333 222222222 2333444567788889998887754 36789999999
Q ss_pred hhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCC---Ccc-----EEEEcCCCCCh
Q 013176 282 KKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVK---DIK-----CVVNYDFPTSL 353 (448)
Q Consensus 282 ~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~---~~~-----~Vi~~~~p~s~ 353 (448)
++.++.+++.|.+.++++..+|+.++. ++..+..|+.+...|+|||+++++|+||+ ++. +||+++.|.+.
T Consensus 483 ~~~se~L~~~L~~~gi~~~~Lhg~~~~--rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~ 560 (656)
T PRK12898 483 VAASERLSALLREAGLPHQVLNAKQDA--EEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSA 560 (656)
T ss_pred HHHHHHHHHHHHHCCCCEEEeeCCcHH--HHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCH
Confidence 999999999999999999999998764 44555556666667999999999999999 666 99999999999
Q ss_pred hhhhhcccccCCCCCCceEEEEecCCChH
Q 013176 354 EDYVHRIGRTGRAGARGTAFTFFTHSNAK 382 (448)
Q Consensus 354 ~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~ 382 (448)
..|.||+||+||.|++|.++++++..|.-
T Consensus 561 r~y~hr~GRTGRqG~~G~s~~~is~eD~l 589 (656)
T PRK12898 561 RIDRQLAGRCGRQGDPGSYEAILSLEDDL 589 (656)
T ss_pred HHHHHhcccccCCCCCeEEEEEechhHHH
Confidence 99999999999999999999999876543
No 67
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=6.1e-37 Score=310.28 Aligned_cols=306 Identities=19% Similarity=0.256 Sum_probs=229.6
Q ss_pred HHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHH-HhhcCCCce
Q 013176 52 PIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEAL-KFGSRAGIR 130 (448)
Q Consensus 52 ~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~-~~~~~~~~~ 130 (448)
.+-.+.+..+..+++++++++||||||.++.++++..... +.+++|+.|++++|.|+++.+. .++...+..
T Consensus 5 ~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~--------~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~ 76 (819)
T TIGR01970 5 AVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPGI--------GGKIIMLEPRRLAARSAAQRLASQLGEAVGQT 76 (819)
T ss_pred HHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhcc--------CCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcE
Confidence 3445677777788999999999999999999998876521 4579999999999999999986 444445555
Q ss_pred EEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccc-cccCCCHH-HHHHHHHHcCCCcce
Q 013176 131 STCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADR-MLDMGFEP-QIRKIVTQIRPDRQT 208 (448)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~-~~~~~~~~-~~~~~~~~~~~~~~~ 208 (448)
+.+...... ......+|+|+|++.|++.+.. ...++++++|||||+|. .++..+.- .+..+...++++.++
T Consensus 77 VGy~vr~~~------~~s~~t~I~v~T~G~Llr~l~~-d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlql 149 (819)
T TIGR01970 77 VGYRVRGEN------KVSRRTRLEVVTEGILTRMIQD-DPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKI 149 (819)
T ss_pred EEEEEcccc------ccCCCCcEEEECCcHHHHHHhh-CcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceE
Confidence 555444332 2234578999999999998876 45789999999999994 56555433 334555667788999
Q ss_pred EEEeccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceEEEEecchhHH-----HHHHHHHHhhhcCCcEEEEecchh
Q 013176 209 LYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKY-----NRLIKLLKEVMDGSRILIFTETKK 283 (448)
Q Consensus 209 v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~~~l~~~~~~~k~lVf~~~~~ 283 (448)
++||||++... ...++.++..+..... ...+...+......++. ..+..++.+ ..+++|||+++..
T Consensus 150 IlmSATl~~~~---l~~~l~~~~vI~~~gr----~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~--~~g~iLVFlpg~~ 220 (819)
T TIGR01970 150 LAMSATLDGER---LSSLLPDAPVVESEGR----SFPVEIRYLPLRGDQRLEDAVSRAVEHALAS--ETGSILVFLPGQA 220 (819)
T ss_pred EEEeCCCCHHH---HHHHcCCCcEEEecCc----ceeeeeEEeecchhhhHHHHHHHHHHHHHHh--cCCcEEEEECCHH
Confidence 99999998653 3455555444333221 11123333222222222 122233322 3568999999999
Q ss_pred HHHHHHHHHHh---CCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCCCccEEEEcCCCC---------
Q 013176 284 GCDQVTRQLRM---DGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVKDIKCVVNYDFPT--------- 351 (448)
Q Consensus 284 ~~~~l~~~L~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~Vi~~~~p~--------- 351 (448)
+++.+++.|++ .++.+..+||+++.++|.++++.|++|+.+|||||+++++|||+|++++||+++.|.
T Consensus 221 eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g 300 (819)
T TIGR01970 221 EIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTG 300 (819)
T ss_pred HHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccC
Confidence 99999999987 378899999999999999999999999999999999999999999999999999875
Q ss_pred ---------ChhhhhhcccccCCCCCCceEEEEecCCChH
Q 013176 352 ---------SLEDYVHRIGRTGRAGARGTAFTFFTHSNAK 382 (448)
Q Consensus 352 ---------s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~ 382 (448)
|-+++.||+||+||. .+|.|+.++++.+..
T Consensus 301 ~~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~~ 339 (819)
T TIGR01970 301 ITRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQHQ 339 (819)
T ss_pred CceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHHH
Confidence 223589999999999 899999999876543
No 68
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=1e-37 Score=314.62 Aligned_cols=337 Identities=23% Similarity=0.315 Sum_probs=270.8
Q ss_pred HHHHHHHHCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHH
Q 013176 37 YCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQI 116 (448)
Q Consensus 37 ~l~~~~~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~ 116 (448)
........+|...+|+-|.++|...+.|+++++.+|||.||++||.+|++.. ++..+||.|..+|++++
T Consensus 252 ~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~-----------~gitvVISPL~SLm~DQ 320 (941)
T KOG0351|consen 252 LELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL-----------GGVTVVISPLISLMQDQ 320 (941)
T ss_pred HHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc-----------CCceEEeccHHHHHHHH
Confidence 3334445689999999999999999999999999999999999999999876 55799999999999888
Q ss_pred HHHHHHhhcCCCceEEEEEcCCCchHh---HHHHhc---CCcEEEEccHHHHHHHH--ccccCCCC---ccEEEEecccc
Q 013176 117 QEEALKFGSRAGIRSTCIYGGAPKGPQ---IRDLRR---GVEIVIATPGRLIDMLE--AQHTNLRR---VTYLVLDEADR 185 (448)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~---~~~iiv~T~~~l~~~~~--~~~~~~~~---~~~iIvDE~h~ 185 (448)
...+.. .++....+.++....+. ++.+.. ..+|++.|||++...-. .....+.. +.++||||||+
T Consensus 321 v~~L~~----~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHC 396 (941)
T KOG0351|consen 321 VTHLSK----KGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHC 396 (941)
T ss_pred HHhhhh----cCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHH
Confidence 777744 47888888888776543 333433 37899999999854321 12223444 78999999999
Q ss_pred cccCC--CHHHHHHHHHHc--CCCcceEEEeccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceEEEEecchhHHHH
Q 013176 186 MLDMG--FEPQIRKIVTQI--RPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNR 261 (448)
Q Consensus 186 ~~~~~--~~~~~~~~~~~~--~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (448)
+++|+ |++.++++.... .+...++++|||....+...+...++-.......... .+.++...+...........
T Consensus 397 VSqWgHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~sf--nR~NL~yeV~~k~~~~~~~~ 474 (941)
T KOG0351|consen 397 VSQWGHDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKSSF--NRPNLKYEVSPKTDKDALLD 474 (941)
T ss_pred hhhhcccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceecccC--CCCCceEEEEeccCccchHH
Confidence 99998 888877764332 2447899999999988888777766655444433332 22233333333333455556
Q ss_pred HHHHHHhhhcCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCCCc
Q 013176 262 LIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVKDI 341 (448)
Q Consensus 262 l~~~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~ 341 (448)
+....+....+..+||||.++.+|+.++..|...++.+..||++|++.+|..+.+.|..++++|+|||=++++|||.|++
T Consensus 475 ~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DV 554 (941)
T KOG0351|consen 475 ILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDV 554 (941)
T ss_pred HHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCce
Confidence 66677777778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcCCCCChhhhhhcccccCCCCCCceEEEEecCCChHHHHHHHHH
Q 013176 342 KCVVNYDFPTSLEDYVHRIGRTGRAGARGTAFTFFTHSNAKFARDLIKI 390 (448)
Q Consensus 342 ~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~ 390 (448)
+.||+|.+|.+++.|.|-+|||||+|....|++|+...+...++.++..
T Consensus 555 R~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~s 603 (941)
T KOG0351|consen 555 RFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRLLTS 603 (941)
T ss_pred eEEEECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHHHHc
Confidence 9999999999999999999999999999999999998877655555433
No 69
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=4.2e-36 Score=311.85 Aligned_cols=322 Identities=25% Similarity=0.308 Sum_probs=239.5
Q ss_pred CCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCC
Q 013176 49 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAG 128 (448)
Q Consensus 49 ~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~ 128 (448)
++++||++++..++.+ ++++++|||+|||+++++++...+.. .+.++||++||++|+.|+.+.++++....+
T Consensus 15 ~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~-------~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~ 86 (773)
T PRK13766 15 EARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHK-------KGGKVLILAPTKPLVEQHAEFFRKFLNIPE 86 (773)
T ss_pred CccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHh-------CCCeEEEEeCcHHHHHHHHHHHHHHhCCCC
Confidence 8999999999988877 89999999999999998888877632 256899999999999999999998765444
Q ss_pred ceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCCCHHHHHHHHHHcCCCcce
Q 013176 129 IRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQT 208 (448)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~ 208 (448)
.++..++|+.+... ...+...++|+|+||+.+...+......+.++++|||||||++........+........+..++
T Consensus 87 ~~v~~~~g~~~~~~-r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~~i 165 (773)
T PRK13766 87 EKIVVFTGEVSPEK-RAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNPLV 165 (773)
T ss_pred ceEEEEeCCCCHHH-HHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCCCEE
Confidence 57777777766543 34444567999999999988887777788899999999999987654333444444344456679
Q ss_pred EEEeccCchHHHH---HHHHHcCCCeEE--------------------EeCCcc-------------------------c
Q 013176 209 LYWSATWPREVET---LARQFLRNPYKV--------------------IIGSLE-------------------------L 240 (448)
Q Consensus 209 v~~SAT~~~~~~~---~~~~~~~~~~~~--------------------~~~~~~-------------------------~ 240 (448)
+++|||+...... .+..+......+ .+.... .
T Consensus 166 l~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~~~ 245 (773)
T PRK13766 166 LGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELGVI 245 (773)
T ss_pred EEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 9999998432211 111111000000 000000 0
Q ss_pred -ccc------------cCcc------------------------------------------------------------
Q 013176 241 -KAN------------QSIN------------------------------------------------------------ 247 (448)
Q Consensus 241 -~~~------------~~~~------------------------------------------------------------ 247 (448)
... ..+.
T Consensus 246 ~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~ 325 (773)
T PRK13766 246 VSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKASKR 325 (773)
T ss_pred ccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHHHH
Confidence 000 0000
Q ss_pred ------------eEEEEecchhHHHHHHHHHHhhh---cCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCC-------
Q 013176 248 ------------QVVEVVTEAEKYNRLIKLLKEVM---DGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGD------- 305 (448)
Q Consensus 248 ------------~~~~~~~~~~~~~~l~~~l~~~~---~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~------- 305 (448)
.........+|+..|.+++++.. .+.++||||+++.+|..+++.|...++++..++|.
T Consensus 326 l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~ 405 (773)
T PRK13766 326 LVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDK 405 (773)
T ss_pred HHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccC
Confidence 00000112345666666776653 46799999999999999999999989999989886
Q ss_pred -CCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCCCccEEEEcCCCCChhhhhhcccccCCCCCCceEEEEecCCC
Q 013176 306 -KNQSERDWVLAEFRSGRSPIMTATDVAARGLDVKDIKCVVNYDFPTSLEDYVHRIGRTGRAGARGTAFTFFTHSN 380 (448)
Q Consensus 306 -~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~ 380 (448)
+++.+|..+++.|++|+.++||+|+++++|+|+|++++||+||+|+++..|+||+||++|.+. +.+++++....
T Consensus 406 ~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~-~~v~~l~~~~t 480 (773)
T PRK13766 406 GMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE-GRVVVLIAKGT 480 (773)
T ss_pred CCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC-CEEEEEEeCCC
Confidence 889999999999999999999999999999999999999999999999999999999999854 77877776553
No 70
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=1e-36 Score=309.53 Aligned_cols=305 Identities=19% Similarity=0.302 Sum_probs=228.1
Q ss_pred HHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHH-hhcCCCce
Q 013176 52 PIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALK-FGSRAGIR 130 (448)
Q Consensus 52 ~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~-~~~~~~~~ 130 (448)
.+-.+.+.++.+++++++.++||||||.++.++++..... +.+++|++||+++|.|+++.+.+ ++...+..
T Consensus 8 ~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~--------~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~ 79 (812)
T PRK11664 8 AVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGI--------NGKIIMLEPRRLAARNVAQRLAEQLGEKPGET 79 (812)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCc--------CCeEEEECChHHHHHHHHHHHHHHhCcccCce
Confidence 3445677778888999999999999999998888865321 34799999999999999999864 44555667
Q ss_pred EEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEeccccc-ccCCC-HHHHHHHHHHcCCCcce
Q 013176 131 STCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRM-LDMGF-EPQIRKIVTQIRPDRQT 208 (448)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~-~~~~~-~~~~~~~~~~~~~~~~~ 208 (448)
+....++... .....+|+|+|++.|++.+.. ...+.++++|||||+|.. ++..+ ...+..+...++++.++
T Consensus 80 VGy~vr~~~~------~~~~t~I~v~T~G~Llr~l~~-d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lql 152 (812)
T PRK11664 80 VGYRMRAESK------VGPNTRLEVVTEGILTRMIQR-DPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKL 152 (812)
T ss_pred EEEEecCccc------cCCCCcEEEEChhHHHHHHhh-CCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceE
Confidence 7666655432 123457999999999998775 457899999999999973 33322 22334555667788999
Q ss_pred EEEeccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceEEEEecchhHHH-----HHHHHHHhhhcCCcEEEEecchh
Q 013176 209 LYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYN-----RLIKLLKEVMDGSRILIFTETKK 283 (448)
Q Consensus 209 v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~l~~~l~~~~~~~k~lVf~~~~~ 283 (448)
++||||++.. .+ ..++.++..+..... ...+.+.+......++.. .+...+.+ ..+.+|||+++..
T Consensus 153 ilmSATl~~~--~l-~~~~~~~~~I~~~gr----~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~--~~g~iLVFlpg~~ 223 (812)
T PRK11664 153 LIMSATLDND--RL-QQLLPDAPVIVSEGR----SFPVERRYQPLPAHQRFDEAVARATAELLRQ--ESGSLLLFLPGVG 223 (812)
T ss_pred EEEecCCCHH--HH-HHhcCCCCEEEecCc----cccceEEeccCchhhhHHHHHHHHHHHHHHh--CCCCEEEEcCCHH
Confidence 9999999764 23 455555444433221 111233332223333332 22233322 3578999999999
Q ss_pred HHHHHHHHHHh---CCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCCCccEEEEcCCCC---------
Q 013176 284 GCDQVTRQLRM---DGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVKDIKCVVNYDFPT--------- 351 (448)
Q Consensus 284 ~~~~l~~~L~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~Vi~~~~p~--------- 351 (448)
+++.+++.|++ .++.+..+||+++.++|.++++.|++|+.+|||||+++++|||+|++++||+++.+.
T Consensus 224 ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g 303 (812)
T PRK11664 224 EIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTG 303 (812)
T ss_pred HHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCC
Confidence 99999999987 477899999999999999999999999999999999999999999999999988764
Q ss_pred ---------ChhhhhhcccccCCCCCCceEEEEecCCCh
Q 013176 352 ---------SLEDYVHRIGRTGRAGARGTAFTFFTHSNA 381 (448)
Q Consensus 352 ---------s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 381 (448)
|-+++.||+||+||. .+|.|+.++++.+.
T Consensus 304 ~~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~ 341 (812)
T PRK11664 304 LTRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQA 341 (812)
T ss_pred cceeEEEeechhhhhhhccccCCC-CCcEEEEecCHHHH
Confidence 235799999999999 79999999986544
No 71
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=3.6e-36 Score=296.22 Aligned_cols=320 Identities=17% Similarity=0.212 Sum_probs=220.5
Q ss_pred CCcHHHHhHHHHhhcC---CcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhc
Q 013176 49 EPTPIQAQGWPMALKG---RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGS 125 (448)
Q Consensus 49 ~~~~~Q~~~i~~~~~~---~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~ 125 (448)
.+||||++++..+..+ ++.++++|||+|||++++..+... +.++|||||+..|+.||.+++.++..
T Consensus 255 ~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l-----------~k~tLILvps~~Lv~QW~~ef~~~~~ 323 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV-----------KKSCLVLCTSAVSVEQWKQQFKMWST 323 (732)
T ss_pred CcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh-----------CCCEEEEeCcHHHHHHHHHHHHHhcC
Confidence 6899999999998853 367999999999999977554432 34599999999999999999999865
Q ss_pred CCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHcc--------ccCCCCccEEEEecccccccCCCHHHHHH
Q 013176 126 RAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQ--------HTNLRRVTYLVLDEADRMLDMGFEPQIRK 197 (448)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~--------~~~~~~~~~iIvDE~h~~~~~~~~~~~~~ 197 (448)
.....+..++++.... .....+|+|+|++++.....+. .+....+++||+||||++.. ..+..
T Consensus 324 l~~~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA----~~fr~ 394 (732)
T TIGR00603 324 IDDSQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA----AMFRR 394 (732)
T ss_pred CCCceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH----HHHHH
Confidence 4445566666543221 1234689999998875332211 12234689999999999843 44555
Q ss_pred HHHHcCCCcceEEEeccCchHHHH--HHHHHcCCCeEEEeCCcccccccCc--------------------------ceE
Q 013176 198 IVTQIRPDRQTLYWSATWPREVET--LARQFLRNPYKVIIGSLELKANQSI--------------------------NQV 249 (448)
Q Consensus 198 ~~~~~~~~~~~v~~SAT~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~ 249 (448)
++..+. ....+++|||+...... .+..+++. ..+.....+......+ ...
T Consensus 395 il~~l~-a~~RLGLTATP~ReD~~~~~L~~LiGP-~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~ 472 (732)
T TIGR00603 395 VLTIVQ-AHCKLGLTATLVREDDKITDLNFLIGP-KLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRM 472 (732)
T ss_pred HHHhcC-cCcEEEEeecCcccCCchhhhhhhcCC-eeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhh
Confidence 555553 44579999998643211 12222221 1111111000000000 000
Q ss_pred EEEecchhHHHHHHHHHHhh-hcCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcC-CCCEEE
Q 013176 250 VEVVTEAEKYNRLIKLLKEV-MDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSG-RSPIMT 327 (448)
Q Consensus 250 ~~~~~~~~~~~~l~~~l~~~-~~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~vLv 327 (448)
......+.|+..+..+++.. ..+.++||||.+...+..+++.|. +..+||+++..+|..+++.|+++ .+++||
T Consensus 473 ~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~-----~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv 547 (732)
T TIGR00603 473 LLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQQERMQILQNFQHNPKVNTIF 547 (732)
T ss_pred HHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC-----CceEECCCCHHHHHHHHHHHHhCCCccEEE
Confidence 01112344555655566543 257799999999999999998873 45689999999999999999865 789999
Q ss_pred EeccccCCCCCCCccEEEEcCCCC-ChhhhhhcccccCCCCCCceE-------EEEecCCCh--HHHHHHHHHHHHhC
Q 013176 328 ATDVAARGLDVKDIKCVVNYDFPT-SLEDYVHRIGRTGRAGARGTA-------FTFFTHSNA--KFARDLIKILQEAG 395 (448)
Q Consensus 328 ~T~~~~~Gidi~~~~~Vi~~~~p~-s~~~~~Q~~GR~~R~g~~g~~-------~~~~~~~~~--~~~~~l~~~~~~~~ 395 (448)
+|+++.+|+|+|++++||+++.|. |..+|+||+||++|.+..+.+ +.|++.+.. .+..+...++.+++
T Consensus 548 ~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~~Rq~fl~~qG 625 (732)
T TIGR00603 548 LSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYSTKRQRFLVDQG 625 (732)
T ss_pred EecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHHHHHHHHHHCC
Confidence 999999999999999999999885 999999999999998765543 777776644 34455566665443
No 72
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=6e-36 Score=304.23 Aligned_cols=333 Identities=23% Similarity=0.339 Sum_probs=256.0
Q ss_pred CHHHHHHHHHCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHH
Q 013176 35 PDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAV 114 (448)
Q Consensus 35 ~~~l~~~~~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~ 114 (448)
...+...+.+.|+..|+.||.+|+..+.+|++++|..+||||||.+|++|++.++.+.+ ..++|+|.||++|+.
T Consensus 56 ~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~------~a~AL~lYPtnALa~ 129 (851)
T COG1205 56 DESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDP------SARALLLYPTNALAN 129 (851)
T ss_pred hhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCc------CccEEEEechhhhHh
Confidence 34456777888888999999999999999999999999999999999999999988864 347899999999999
Q ss_pred HHHHHHHHhhcCCC--ceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHcccc----CCCCccEEEEeccccccc
Q 013176 115 QIQEEALKFGSRAG--IRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHT----NLRRVTYLVLDEADRMLD 188 (448)
Q Consensus 115 q~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~----~~~~~~~iIvDE~h~~~~ 188 (448)
++.++++++....+ +......|+....+....+...++|++|||++|...+..... .++++++||+||+|.+-.
T Consensus 130 DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrG 209 (851)
T COG1205 130 DQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRG 209 (851)
T ss_pred hHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccc
Confidence 99999999988777 777777777776666577788999999999999875554332 456799999999997654
Q ss_pred CCCHHHHHHHH-------HHcCCCcceEEEeccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceEEEEec-------
Q 013176 189 MGFEPQIRKIV-------TQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVT------- 254 (448)
Q Consensus 189 ~~~~~~~~~~~-------~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 254 (448)
- ++..+..++ +....+.|+++.|||+.+. ..++..+.+......+.... .+.. ....+...+
T Consensus 210 v-~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np-~e~~~~l~~~~f~~~v~~~g-~~~~-~~~~~~~~p~~~~~~~ 285 (851)
T COG1205 210 V-QGSEVALLLRRLLRRLRRYGSPLQIICTSATLANP-GEFAEELFGRDFEVPVDEDG-SPRG-LRYFVRREPPIRELAE 285 (851)
T ss_pred c-chhHHHHHHHHHHHHHhccCCCceEEEEeccccCh-HHHHHHhcCCcceeeccCCC-CCCC-ceEEEEeCCcchhhhh
Confidence 3 344433333 3334578999999998654 45666666666555322111 1121 122221111
Q ss_pred --chhHHHHHHHHHHhh-hcCCcEEEEecchhHHHHHH----HHHHhCC----CCeEEEcCCCCHHHHHHHHHHHhcCCC
Q 013176 255 --EAEKYNRLIKLLKEV-MDGSRILIFTETKKGCDQVT----RQLRMDG----WPALSIHGDKNQSERDWVLAEFRSGRS 323 (448)
Q Consensus 255 --~~~~~~~l~~~l~~~-~~~~k~lVf~~~~~~~~~l~----~~L~~~~----~~~~~~~~~~~~~~r~~~~~~f~~g~~ 323 (448)
.......+..+.... .++-++|+|+.++..++.+. +.+...+ ..+..+++++..++|.+++..|++|+.
T Consensus 286 ~~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~ 365 (851)
T COG1205 286 SIRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGEL 365 (851)
T ss_pred hcccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCc
Confidence 113333333333332 25679999999999999997 4444444 568899999999999999999999999
Q ss_pred CEEEEeccccCCCCCCCccEEEEcCCCC-ChhhhhhcccccCCCCCCceEEEEec
Q 013176 324 PIMTATDVAARGLDVKDIKCVVNYDFPT-SLEDYVHRIGRTGRAGARGTAFTFFT 377 (448)
Q Consensus 324 ~vLv~T~~~~~Gidi~~~~~Vi~~~~p~-s~~~~~Q~~GR~~R~g~~g~~~~~~~ 377 (448)
.++++|++++-|+|+.+++.||..+.|. +..++.|+.||+||.++....+++..
T Consensus 366 ~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~ 420 (851)
T COG1205 366 LGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLR 420 (851)
T ss_pred cEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeC
Confidence 9999999999999999999999999999 99999999999999986666655554
No 73
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=9.9e-36 Score=295.99 Aligned_cols=322 Identities=21% Similarity=0.250 Sum_probs=242.0
Q ss_pred HCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013176 44 KLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (448)
Q Consensus 44 ~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~ 123 (448)
.+|+ .|+++|..+...+.+|+ ++.+.||+|||+++++|++..+.. ++.++|++||+.||.|.++++..+
T Consensus 74 ~~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~--------G~~v~VvTpt~~LA~qd~e~~~~l 142 (790)
T PRK09200 74 VLGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALE--------GKGVHLITVNDYLAKRDAEEMGQV 142 (790)
T ss_pred HhCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHc--------CCCeEEEeCCHHHHHHHHHHHHHH
Confidence 4688 89999999999888775 899999999999999999866555 667999999999999999999999
Q ss_pred hcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHH-HHHHHccc------cCCCCccEEEEecccccccCC------
Q 013176 124 GSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRL-IDMLEAQH------TNLRRVTYLVLDEADRMLDMG------ 190 (448)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~~~~~~------~~~~~~~~iIvDE~h~~~~~~------ 190 (448)
...+++++.++.|+.+...+.+ ....++|+++||..| .+++.... ..++.+.++|+||+|.++-..
T Consensus 143 ~~~lGl~v~~i~g~~~~~~~r~-~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpli 221 (790)
T PRK09200 143 YEFLGLTVGLNFSDIDDASEKK-AIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLI 221 (790)
T ss_pred HhhcCCeEEEEeCCCCcHHHHH-HhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCcee
Confidence 9999999999999887433333 334689999999888 45444322 245778999999999754100
Q ss_pred ----------CHHHHHHHHHHcCC--------------------------------------------------------
Q 013176 191 ----------FEPQIRKIVTQIRP-------------------------------------------------------- 204 (448)
Q Consensus 191 ----------~~~~~~~~~~~~~~-------------------------------------------------------- 204 (448)
....+..+...+..
T Consensus 222 isg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~ 301 (790)
T PRK09200 222 ISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKR 301 (790)
T ss_pred eeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhc
Confidence 00001111111100
Q ss_pred -------------------------------------------------------------CcceEEEeccCchHHHHHH
Q 013176 205 -------------------------------------------------------------DRQTLYWSATWPREVETLA 223 (448)
Q Consensus 205 -------------------------------------------------------------~~~~v~~SAT~~~~~~~~~ 223 (448)
..++.+||+|.......+.
T Consensus 302 d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~ 381 (790)
T PRK09200 302 DVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFF 381 (790)
T ss_pred CCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHH
Confidence 0155677777654444443
Q ss_pred HHHcCCCeEEEeCCcccccccCcceEEEEecchhHHHHHHHHHHhh-hcCCcEEEEecchhHHHHHHHHHHhCCCCeEEE
Q 013176 224 RQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKEV-MDGSRILIFTETKKGCDQVTRQLRMDGWPALSI 302 (448)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~ 302 (448)
..++-++. .++...+....... .........|...+.+.+.+. ..+.++||||++++.++.++..|.+.++++..+
T Consensus 382 -~~Y~l~v~-~IPt~kp~~r~d~~-~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L 458 (790)
T PRK09200 382 -EVYNMEVV-QIPTNRPIIRIDYP-DKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLL 458 (790)
T ss_pred -HHhCCcEE-ECCCCCCcccccCC-CeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEe
Confidence 33333332 22222222222222 223346677888888888664 457799999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCC---CCcc-----EEEEcCCCCChhhhhhcccccCCCCCCceEEE
Q 013176 303 HGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDV---KDIK-----CVVNYDFPTSLEDYVHRIGRTGRAGARGTAFT 374 (448)
Q Consensus 303 ~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi---~~~~-----~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~ 374 (448)
|+.+...++..+...++.| .|+|||+++++|+|+ |++. +||+++.|.+...|.||+||+||.|++|.+++
T Consensus 459 ~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~ 536 (790)
T PRK09200 459 NAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQF 536 (790)
T ss_pred cCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEE
Confidence 9999988888777777655 799999999999999 6898 99999999999999999999999999999999
Q ss_pred EecCCChH
Q 013176 375 FFTHSNAK 382 (448)
Q Consensus 375 ~~~~~~~~ 382 (448)
+++..+.-
T Consensus 537 ~is~eD~l 544 (790)
T PRK09200 537 FISLEDDL 544 (790)
T ss_pred EEcchHHH
Confidence 99876553
No 74
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=1.6e-35 Score=310.49 Aligned_cols=290 Identities=21% Similarity=0.348 Sum_probs=210.8
Q ss_pred HHHHHHHH-CCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHH
Q 013176 37 YCLEVIAK-LGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQ 115 (448)
Q Consensus 37 ~l~~~~~~-~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q 115 (448)
++.+++.. .|+ .|+++|+.+++.++.++++++++|||+|||. |.++++..+... +++++|++||++|+.|
T Consensus 66 ~f~~~f~~~~g~-~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~~-------g~~vLIL~PTreLa~Q 136 (1171)
T TIGR01054 66 EFEEFFKKAVGS-EPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAKK-------GKRCYIILPTTLLVIQ 136 (1171)
T ss_pred HHHHHHHHhcCC-CCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHhc-------CCeEEEEeCHHHHHHH
Confidence 34455554 455 8999999999999999999999999999997 556665554432 6789999999999999
Q ss_pred HHHHHHHhhcCCCceEE---EEEcCCCchHh---HHHHhc-CCcEEEEccHHHHHHHHccccCCCCccEEEEeccccccc
Q 013176 116 IQEEALKFGSRAGIRST---CIYGGAPKGPQ---IRDLRR-GVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLD 188 (448)
Q Consensus 116 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~---~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~ 188 (448)
+.+.++++....++.+. .++|+.+..+. ...+.. +++|+|+||++|.+.+.... . +++++|+||||++++
T Consensus 137 i~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~--~-~~~~iVvDEaD~~L~ 213 (1171)
T TIGR01054 137 VAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG--P-KFDFIFVDDVDALLK 213 (1171)
T ss_pred HHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc--C-CCCEEEEeChHhhhh
Confidence 99999999877665543 46677665443 233443 58999999999988766422 2 799999999999987
Q ss_pred -----------CCCHHH-HHHHH----------------------HHcCCCcc--eEEEeccC-chHHHHHHHHHcCCCe
Q 013176 189 -----------MGFEPQ-IRKIV----------------------TQIRPDRQ--TLYWSATW-PREVETLARQFLRNPY 231 (448)
Q Consensus 189 -----------~~~~~~-~~~~~----------------------~~~~~~~~--~v~~SAT~-~~~~~~~~~~~~~~~~ 231 (448)
.+|... +..++ ..++...| ++++|||. +.... ..++.+..
T Consensus 214 ~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~---~~l~r~ll 290 (1171)
T TIGR01054 214 ASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKR---AKLFRELL 290 (1171)
T ss_pred ccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccH---HHHccccc
Confidence 456542 33322 22333444 56789994 44322 22344444
Q ss_pred EEEeCCcccccccCcceEEEEecchhHHHHHHHHHHhhhcCCcEEEEecch---hHHHHHHHHHHhCCCCeEEEcCCCCH
Q 013176 232 KVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKEVMDGSRILIFTETK---KGCDQVTRQLRMDGWPALSIHGDKNQ 308 (448)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~k~lVf~~~~---~~~~~l~~~L~~~~~~~~~~~~~~~~ 308 (448)
.+.+.... .....+.+.+.... .+...+.++++.. +.++||||++. +.|+.+++.|++.++++..+||+++.
T Consensus 291 ~~~v~~~~-~~~r~I~~~~~~~~--~~~~~L~~ll~~l--~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~ 365 (1171)
T TIGR01054 291 GFEVGGGS-DTLRNVVDVYVEDE--DLKETLLEIVKKL--GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK 365 (1171)
T ss_pred ceEecCcc-ccccceEEEEEecc--cHHHHHHHHHHHc--CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH
Confidence 34333322 22223333332222 2244566666653 46799999999 99999999999999999999999973
Q ss_pred HHHHHHHHHHhcCCCCEEEEe----ccccCCCCCCC-ccEEEEcCCC
Q 013176 309 SERDWVLAEFRSGRSPIMTAT----DVAARGLDVKD-IKCVVNYDFP 350 (448)
Q Consensus 309 ~~r~~~~~~f~~g~~~vLv~T----~~~~~Gidi~~-~~~Vi~~~~p 350 (448)
.+++.|++|+++||||| +++++|+|+|+ +++||++|+|
T Consensus 366 ----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P 408 (1171)
T TIGR01054 366 ----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVP 408 (1171)
T ss_pred ----HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCC
Confidence 58999999999999995 89999999999 8999998876
No 75
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=2e-35 Score=291.02 Aligned_cols=319 Identities=20% Similarity=0.203 Sum_probs=230.7
Q ss_pred cHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCCce
Q 013176 51 TPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIR 130 (448)
Q Consensus 51 ~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~ 130 (448)
+|+|.+++..+..+++.++.++||+|||++|++|++..+.. ++.++|++|++.||.|+.+++..+...++++
T Consensus 70 rpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~--------g~~V~VVTpn~yLA~Rdae~m~~l~~~LGLs 141 (762)
T TIGR03714 70 FPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALT--------GKGAMLVTTNDYLAKRDAEEMGPVYEWLGLT 141 (762)
T ss_pred CccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhc--------CCceEEeCCCHHHHHHHHHHHHHHHhhcCCc
Confidence 55555555555555557999999999999999998766554 4469999999999999999999999999999
Q ss_pred EEEEEcCCC---chHhHHHHhcCCcEEEEccHHH-HHHHHcc------ccCCCCccEEEEecccccccCC----------
Q 013176 131 STCIYGGAP---KGPQIRDLRRGVEIVIATPGRL-IDMLEAQ------HTNLRRVTYLVLDEADRMLDMG---------- 190 (448)
Q Consensus 131 ~~~~~~~~~---~~~~~~~~~~~~~iiv~T~~~l-~~~~~~~------~~~~~~~~~iIvDE~h~~~~~~---------- 190 (448)
+.+.+++.. ..........+++|+++||+.| .+++... ...++.+.++|+||||.++-..
T Consensus 142 v~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpliisg~ 221 (762)
T TIGR03714 142 VSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVISGA 221 (762)
T ss_pred EEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeeeeCC
Confidence 988776522 2223344446799999999999 5555322 2346788999999999864100
Q ss_pred ------CHHHHHHHHHHcCC------------------------------------------------------------
Q 013176 191 ------FEPQIRKIVTQIRP------------------------------------------------------------ 204 (448)
Q Consensus 191 ------~~~~~~~~~~~~~~------------------------------------------------------------ 204 (448)
.......+...+.+
T Consensus 222 ~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d~dY 301 (762)
T TIGR03714 222 PRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNKDY 301 (762)
T ss_pred CccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcCCce
Confidence 00011111111100
Q ss_pred ---------------------------------------------------------CcceEEEeccCchHHHHHHHHHc
Q 013176 205 ---------------------------------------------------------DRQTLYWSATWPREVETLARQFL 227 (448)
Q Consensus 205 ---------------------------------------------------------~~~~v~~SAT~~~~~~~~~~~~~ 227 (448)
..++.+||+|......++.. .+
T Consensus 302 iV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~-iY 380 (762)
T TIGR03714 302 VVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIE-TY 380 (762)
T ss_pred EEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHHH-Hh
Confidence 01566777776554444443 33
Q ss_pred CCCeEEEeCCcccccccCcceEEEEecchhHHHHHHHHHHhh-hcCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCC
Q 013176 228 RNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKEV-MDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDK 306 (448)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 306 (448)
+-.+ +.++...+..... .....+.....|...+.+.+.+. ..+.++||||++++.++.+++.|.+.++++..+|+.+
T Consensus 381 ~l~v-~~IPt~kp~~r~d-~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~ 458 (762)
T TIGR03714 381 SLSV-VKIPTNKPIIRID-YPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQN 458 (762)
T ss_pred CCCE-EEcCCCCCeeeee-CCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCC
Confidence 3333 2222222122221 12233455677888888877664 4577999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhcCCCCEEEEeccccCCCCCC---------CccEEEEcCCCCChhhhhhcccccCCCCCCceEEEEec
Q 013176 307 NQSERDWVLAEFRSGRSPIMTATDVAARGLDVK---------DIKCVVNYDFPTSLEDYVHRIGRTGRAGARGTAFTFFT 377 (448)
Q Consensus 307 ~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~---------~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~ 377 (448)
...++..+.+.++.| .|+|||+++++|+|+| ++.+|+++++|....+ .||+||+||.|++|.+++|++
T Consensus 459 ~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~~is 535 (762)
T TIGR03714 459 AAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQFFVS 535 (762)
T ss_pred hHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEEEEc
Confidence 998887777776665 6999999999999999 8999999999987766 999999999999999999998
Q ss_pred CCChHH
Q 013176 378 HSNAKF 383 (448)
Q Consensus 378 ~~~~~~ 383 (448)
..+.-+
T Consensus 536 ~eD~l~ 541 (762)
T TIGR03714 536 LEDDLI 541 (762)
T ss_pred cchhhh
Confidence 765543
No 76
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=2.5e-35 Score=276.54 Aligned_cols=291 Identities=16% Similarity=0.163 Sum_probs=198.4
Q ss_pred HHHhHHHHhhcCCc--EEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcC----
Q 013176 53 IQAQGWPMALKGRD--LIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSR---- 126 (448)
Q Consensus 53 ~Q~~~i~~~~~~~~--~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~---- 126 (448)
+|.++++++.++++ +++++|||+|||++|+++++.. ..++++++|+++|+.|+.+.++++...
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~-----------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~ 69 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG-----------ENDTIALYPTNALIEDQTEAIKEFVDVFKPE 69 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc-----------CCCEEEEeChHHHHHHHHHHHHHHHHhcCCC
Confidence 59999999998864 7889999999999999988852 335899999999999999999887632
Q ss_pred CCceEEEEEcCCCchH-hH-----------------H--HHhcCCcEEEEccHHHHHHHHcccc--------CCCCccEE
Q 013176 127 AGIRSTCIYGGAPKGP-QI-----------------R--DLRRGVEIVIATPGRLIDMLEAQHT--------NLRRVTYL 178 (448)
Q Consensus 127 ~~~~~~~~~~~~~~~~-~~-----------------~--~~~~~~~iiv~T~~~l~~~~~~~~~--------~~~~~~~i 178 (448)
.+..+..+.|....+. .. + .....+.|++|||+.|..++..... .+.++++|
T Consensus 70 ~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~i 149 (357)
T TIGR03158 70 RDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTV 149 (357)
T ss_pred CCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEE
Confidence 2455565665422210 00 0 1123678899999999765543211 24678999
Q ss_pred EEecccccccCCC-----HHHHHHHHHHcCCCcceEEEeccCchHHHHHHHHH--cCCCeEEEeCCccc---------cc
Q 013176 179 VLDEADRMLDMGF-----EPQIRKIVTQIRPDRQTLYWSATWPREVETLARQF--LRNPYKVIIGSLEL---------KA 242 (448)
Q Consensus 179 IvDE~h~~~~~~~-----~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~--~~~~~~~~~~~~~~---------~~ 242 (448)
||||+|.+..+.. ......+++......+++++|||+++.+...+... .+.+.......... ..
T Consensus 150 V~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~ 229 (357)
T TIGR03158 150 IFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADN 229 (357)
T ss_pred EEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccc
Confidence 9999999875431 11223333333345799999999998777766654 33333222111000 00
Q ss_pred c--------cCcceEEEEecchhHHHHH---HHHHHhh---hcCCcEEEEecchhHHHHHHHHHHhCC--CCeEEEcCCC
Q 013176 243 N--------QSINQVVEVVTEAEKYNRL---IKLLKEV---MDGSRILIFTETKKGCDQVTRQLRMDG--WPALSIHGDK 306 (448)
Q Consensus 243 ~--------~~~~~~~~~~~~~~~~~~l---~~~l~~~---~~~~k~lVf~~~~~~~~~l~~~L~~~~--~~~~~~~~~~ 306 (448)
. ..+...+.. ....+...+ .+.+.+. ..++++||||++++.++.+++.|++.+ ..+..+||.+
T Consensus 230 ~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~ 308 (357)
T TIGR03158 230 KTQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFA 308 (357)
T ss_pred cccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCC
Confidence 0 122222222 222233333 2323222 246799999999999999999999864 5788899999
Q ss_pred CHHHHHHHHHHHhcCCCCEEEEeccccCCCCCCCccEEEEcCCCCChhhhhhcccccC
Q 013176 307 NQSERDWVLAEFRSGRSPIMTATDVAARGLDVKDIKCVVNYDFPTSLEDYVHRIGRTG 364 (448)
Q Consensus 307 ~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Q~~GR~~ 364 (448)
++.+|.+. ++.+|||||+++++|+|+|.. +|| ++ |.+..+|+||+||+|
T Consensus 309 ~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 309 PKKDRERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred CHHHHHHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 99888654 378899999999999999976 555 45 889999999999986
No 77
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=100.00 E-value=3.4e-36 Score=264.12 Aligned_cols=335 Identities=19% Similarity=0.315 Sum_probs=265.1
Q ss_pred ccCCCCHHHHHHHHH-CCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcC
Q 013176 30 QEANFPDYCLEVIAK-LGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAP 108 (448)
Q Consensus 30 ~~~~l~~~l~~~~~~-~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P 108 (448)
++++++.+..+.++. +....+||.|.+++.+.+.+.++++..|||.||++||.+|++.. ....+|++|
T Consensus 74 d~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a-----------dg~alvi~p 142 (695)
T KOG0353|consen 74 DDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA-----------DGFALVICP 142 (695)
T ss_pred CCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc-----------CCceEeech
Confidence 457778888877765 56667899999999999999999999999999999999999986 677999999
Q ss_pred cHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHH------HHhcCCcEEEEccHHHHHHHH-----ccccCCCCccE
Q 013176 109 TRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIR------DLRRGVEIVIATPGRLIDMLE-----AQHTNLRRVTY 177 (448)
Q Consensus 109 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~iiv~T~~~l~~~~~-----~~~~~~~~~~~ 177 (448)
..+|++++.-+++.+ ++....+....+.++... .......+++.||+.+...-. ........+.+
T Consensus 143 lislmedqil~lkql----gi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~ 218 (695)
T KOG0353|consen 143 LISLMEDQILQLKQL----GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKL 218 (695)
T ss_pred hHHHHHHHHHHHHHh----CcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEE
Confidence 999999988888886 455555555444433211 111347899999998743211 11234566889
Q ss_pred EEEecccccccCC--CHHHHHH--HHHHcCCCcceEEEeccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceEEEEe
Q 013176 178 LVLDEADRMLDMG--FEPQIRK--IVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVV 253 (448)
Q Consensus 178 iIvDE~h~~~~~~--~~~~~~~--~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (448)
|-+||+|+.++|+ |++.+.. ++..--++..++++|||..+.+...++..+.-...+........++..........
T Consensus 219 iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~fnr~nl~yev~qkp~ 298 (695)
T KOG0353|consen 219 IAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGFNRPNLKYEVRQKPG 298 (695)
T ss_pred EeecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecccCCCCceeEeeeCCC
Confidence 9999999999987 6555443 23333378889999999988887777776655444444444433333223233334
Q ss_pred cchhHHHHHHHHHHhhhcCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEecccc
Q 013176 254 TEAEKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAA 333 (448)
Q Consensus 254 ~~~~~~~~l~~~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~ 333 (448)
++++-.+.+..+++....+...||||-++++|+.++..|+.+|+.+..||..+.++++.-+.+.|-.|++.|+|+|-+++
T Consensus 299 n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafg 378 (695)
T KOG0353|consen 299 NEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFG 378 (695)
T ss_pred ChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeeec
Confidence 45566677777777777788999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccEEEEcCCCCChhhhhh-------------------------------------------cccccCCCCCCc
Q 013176 334 RGLDVKDIKCVVNYDFPTSLEDYVH-------------------------------------------RIGRTGRAGARG 370 (448)
Q Consensus 334 ~Gidi~~~~~Vi~~~~p~s~~~~~Q-------------------------------------------~~GR~~R~g~~g 370 (448)
+|||-|+++.||+-.+|.|++.|.| ..||+||++.+.
T Consensus 379 mgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a 458 (695)
T KOG0353|consen 379 MGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKA 458 (695)
T ss_pred ccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcc
Confidence 9999999999999999999999999 789999999999
Q ss_pred eEEEEecCC
Q 013176 371 TAFTFFTHS 379 (448)
Q Consensus 371 ~~~~~~~~~ 379 (448)
.|++++.-.
T Consensus 459 ~cilyy~~~ 467 (695)
T KOG0353|consen 459 DCILYYGFA 467 (695)
T ss_pred cEEEEechH
Confidence 999998643
No 78
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=8e-35 Score=284.87 Aligned_cols=322 Identities=22% Similarity=0.261 Sum_probs=241.7
Q ss_pred HCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013176 44 KLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (448)
Q Consensus 44 ~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~ 123 (448)
.+|+ .|++.|.-....+.+|+ +..++||+|||+++.+|++..... +..+.|++||..||.|.++++..+
T Consensus 52 ~lg~-~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~--------G~~V~VvTpt~~LA~qdae~~~~l 120 (745)
T TIGR00963 52 VLGM-RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT--------GKGVHVVTVNDYLAQRDAEWMGQV 120 (745)
T ss_pred HhCC-CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh--------CCCEEEEcCCHHHHHHHHHHHHHH
Confidence 4688 89999998888877664 889999999999999999644443 445999999999999999999999
Q ss_pred hcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHH-HHHHHcc------ccCCCCccEEEEecccccccCC------
Q 013176 124 GSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRL-IDMLEAQ------HTNLRRVTYLVLDEADRMLDMG------ 190 (448)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~~~~~------~~~~~~~~~iIvDE~h~~~~~~------ 190 (448)
...+++++.++.++.+....... -.++|+++||..| ++++..+ ...++.+.++|+||+|.++-..
T Consensus 121 ~~~LGLsv~~i~g~~~~~~r~~~--y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLi 198 (745)
T TIGR00963 121 YRFLGLSVGLILSGMSPEERREA--YACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLI 198 (745)
T ss_pred hccCCCeEEEEeCCCCHHHHHHh--cCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHh
Confidence 99999999999998776443333 3589999999999 8887765 2356889999999999755200
Q ss_pred -------C---HHHHHHHHHHcCC--------------------------------------------------------
Q 013176 191 -------F---EPQIRKIVTQIRP-------------------------------------------------------- 204 (448)
Q Consensus 191 -------~---~~~~~~~~~~~~~-------------------------------------------------------- 204 (448)
. ......+.+.+..
T Consensus 199 isg~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~ 278 (745)
T TIGR00963 199 ISGPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEK 278 (745)
T ss_pred hcCCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhc
Confidence 0 0000000000000
Q ss_pred -------------------------------------------------------------CcceEEEeccCchHHHHHH
Q 013176 205 -------------------------------------------------------------DRQTLYWSATWPREVETLA 223 (448)
Q Consensus 205 -------------------------------------------------------------~~~~v~~SAT~~~~~~~~~ 223 (448)
..++.+||+|.......+.
T Consensus 279 d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~ 358 (745)
T TIGR00963 279 DVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFE 358 (745)
T ss_pred CCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHH
Confidence 0145567777654433333
Q ss_pred HHHcCCCeEEEeCCcccccccCcceEEEEecchhHHHHHHHHHHh-hhcCCcEEEEecchhHHHHHHHHHHhCCCCeEEE
Q 013176 224 RQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKE-VMDGSRILIFTETKKGCDQVTRQLRMDGWPALSI 302 (448)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~ 302 (448)
. .++-++.. ++...+........ ..+.+..+|+..+.+.+.+ ...+.++||||++++.++.+++.|++.++++..+
T Consensus 359 ~-iY~l~vv~-IPtnkp~~R~d~~d-~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~L 435 (745)
T TIGR00963 359 K-IYNLEVVV-VPTNRPVIRKDLSD-LVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVL 435 (745)
T ss_pred H-HhCCCEEE-eCCCCCeeeeeCCC-eEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEe
Confidence 3 33333322 22222222222222 2234456677777765544 3457899999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCCC-------ccEEEEcCCCCChhhhhhcccccCCCCCCceEEEE
Q 013176 303 HGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVKD-------IKCVVNYDFPTSLEDYVHRIGRTGRAGARGTAFTF 375 (448)
Q Consensus 303 ~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~-------~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~ 375 (448)
|+. +.+|+..+..|..+...|+|||+++++|+|++. ..+||+++.|.|...+.|++||+||.|.+|.+..+
T Consensus 436 na~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ 513 (745)
T TIGR00963 436 NAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFF 513 (745)
T ss_pred eCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEE
Confidence 998 778999999999999999999999999999998 45999999999999999999999999999999999
Q ss_pred ecCCChHH
Q 013176 376 FTHSNAKF 383 (448)
Q Consensus 376 ~~~~~~~~ 383 (448)
++..|.-+
T Consensus 514 ls~eD~l~ 521 (745)
T TIGR00963 514 LSLEDNLM 521 (745)
T ss_pred EeccHHHH
Confidence 98876544
No 79
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=2.4e-34 Score=281.27 Aligned_cols=339 Identities=21% Similarity=0.286 Sum_probs=240.6
Q ss_pred HCCCCCCcHHHHhHHHHhhcC-CcEEEEcCCCChHHHHHHHHHHHHhhcCC--CccCCCCceEEEEcCcHHHHHHHHHHH
Q 013176 44 KLGFVEPTPIQAQGWPMALKG-RDLIGIAETGSGKTLSYLLPAFVHVSAQP--RLVQGEGPIVLVLAPTRELAVQIQEEA 120 (448)
Q Consensus 44 ~~~~~~~~~~Q~~~i~~~~~~-~~~lv~~~tGsGKT~~~~l~~l~~~~~~~--~~~~~~~~~vlil~P~~~L~~q~~~~~ 120 (448)
-++|..++.+|.+++|.+... .|.|||||||+|||-.|++.++..+.+.. .....+..+++|++|+++||.++.+.+
T Consensus 105 ~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~ 184 (1230)
T KOG0952|consen 105 FFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKF 184 (1230)
T ss_pred cccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHH
Confidence 367888999999999998865 69999999999999999999999987522 222335789999999999999999999
Q ss_pred HHhhcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHcccc----CCCCccEEEEecccccccCCCHHHHH
Q 013176 121 LKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHT----NLRRVTYLVLDEADRMLDMGFEPQIR 196 (448)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~----~~~~~~~iIvDE~h~~~~~~~~~~~~ 196 (448)
.+-...++++|..++|+....... ...++|||+|||.+ +.+.+... .++.+.++|+||+|.+-+. .++.++
T Consensus 185 ~kkl~~~gi~v~ELTGD~ql~~te---i~~tqiiVTTPEKw-DvvTRk~~~d~~l~~~V~LviIDEVHlLhd~-RGpvlE 259 (1230)
T KOG0952|consen 185 SKKLAPLGISVRELTGDTQLTKTE---IADTQIIVTTPEKW-DVVTRKSVGDSALFSLVRLVIIDEVHLLHDD-RGPVLE 259 (1230)
T ss_pred hhhcccccceEEEecCcchhhHHH---HHhcCEEEecccce-eeeeeeeccchhhhhheeeEEeeeehhhcCc-ccchHH
Confidence 887778899999999987553332 34689999999998 44433322 3566889999999976554 466666
Q ss_pred HHHHHc-------CCCcceEEEeccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceEEEEecch---hHHH-----H
Q 013176 197 KIVTQI-------RPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEA---EKYN-----R 261 (448)
Q Consensus 197 ~~~~~~-------~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-----~ 261 (448)
.+..+. ....++|++|||+|+ .++.+..+.-++..-.......-.+..+.+.+.-.+.. .+.. .
T Consensus 260 tiVaRtlr~vessqs~IRivgLSATlPN-~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~ 338 (1230)
T KOG0952|consen 260 TIVARTLRLVESSQSMIRIVGLSATLPN-YEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVC 338 (1230)
T ss_pred HHHHHHHHHHHhhhhheEEEEeeccCCC-HHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHH
Confidence 554433 356789999999985 44555544433222222222222233333333222221 1111 1
Q ss_pred HHHHHHhhhcCCcEEEEecchhHHHHHHHHHHhC----C-------------------CCeEEEcCCCCHHHHHHHHHHH
Q 013176 262 LIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMD----G-------------------WPALSIHGDKNQSERDWVLAEF 318 (448)
Q Consensus 262 l~~~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~----~-------------------~~~~~~~~~~~~~~r~~~~~~f 318 (448)
..+.++...++.+++|||.++..+...|+.|.+. + ....+.|++|...+|..+.+.|
T Consensus 339 ~~kv~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F 418 (1230)
T KOG0952|consen 339 YDKVVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEF 418 (1230)
T ss_pred HHHHHHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHH
Confidence 1122333445889999999999999999888542 1 1245789999999999999999
Q ss_pred hcCCCCEEEEeccccCCCCCCCccEEEEcCCC-----------CChhhhhhcccccCCCC--CCceEEEEecCCChHHHH
Q 013176 319 RSGRSPIMTATDVAARGLDVKDIKCVVNYDFP-----------TSLEDYVHRIGRTGRAG--ARGTAFTFFTHSNAKFAR 385 (448)
Q Consensus 319 ~~g~~~vLv~T~~~~~Gidi~~~~~Vi~~~~p-----------~s~~~~~Q~~GR~~R~g--~~g~~~~~~~~~~~~~~~ 385 (448)
..|.++||+||..++.|+|+|.- +||+-+-+ .+.-+.+|..|||||-. ..|.+++..+.+....+.
T Consensus 419 ~~G~i~vL~cTaTLAwGVNLPA~-aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~ 497 (1230)
T KOG0952|consen 419 KEGHIKVLCCTATLAWGVNLPAY-AVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYE 497 (1230)
T ss_pred hcCCceEEEecceeeeccCCcce-EEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHH
Confidence 99999999999999999999954 44433322 25667999999999954 457777777766666555
Q ss_pred HHHH
Q 013176 386 DLIK 389 (448)
Q Consensus 386 ~l~~ 389 (448)
.++.
T Consensus 498 sLl~ 501 (1230)
T KOG0952|consen 498 SLLT 501 (1230)
T ss_pred HHHc
Confidence 5543
No 80
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=1.6e-33 Score=270.67 Aligned_cols=293 Identities=21% Similarity=0.245 Sum_probs=201.4
Q ss_pred CCcHHHHhHHHHhhc----CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhh
Q 013176 49 EPTPIQAQGWPMALK----GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (448)
Q Consensus 49 ~~~~~Q~~~i~~~~~----~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~ 124 (448)
.|++||++++.++.. .+..++++|||+|||.+++..+... +..+|||||+++|+.||.+.+.++.
T Consensus 36 ~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~-----------~~~~Lvlv~~~~L~~Qw~~~~~~~~ 104 (442)
T COG1061 36 ELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL-----------KRSTLVLVPTKELLDQWAEALKKFL 104 (442)
T ss_pred CCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh-----------cCCEEEEECcHHHHHHHHHHHHHhc
Confidence 799999999999998 7899999999999999876655443 3349999999999999998877754
Q ss_pred cCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCCCHHHHHHHHHHcCC
Q 013176 125 SRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRP 204 (448)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~ 204 (448)
... ..+..+.++... .. . ..|.|+|.+++.............+++|||||||++....+. .+...+..
T Consensus 105 ~~~-~~~g~~~~~~~~-~~-----~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~----~~~~~~~~ 172 (442)
T COG1061 105 LLN-DEIGIYGGGEKE-LE-----P-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYR----RILELLSA 172 (442)
T ss_pred CCc-cccceecCceec-cC-----C-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHHH----HHHHhhhc
Confidence 332 112222222211 11 0 369999999997642112223346899999999998765433 33333322
Q ss_pred CcceEEEeccCchHHH---HHHHHHcCCCeEEEeCCcccccccCc-----ceEEE-------------------------
Q 013176 205 DRQTLYWSATWPREVE---TLARQFLRNPYKVIIGSLELKANQSI-----NQVVE------------------------- 251 (448)
Q Consensus 205 ~~~~v~~SAT~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~------------------------- 251 (448)
...+++||||++.... ......++ +..+.....+......+ .....
T Consensus 173 ~~~~LGLTATp~R~D~~~~~~l~~~~g-~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~ 251 (442)
T COG1061 173 AYPRLGLTATPEREDGGRIGDLFDLIG-PIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARG 251 (442)
T ss_pred ccceeeeccCceeecCCchhHHHHhcC-CeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhh
Confidence 2228999999764321 11111111 11111111110000000 00000
Q ss_pred -----------EecchhHHHHHHHHHHhhhcCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhc
Q 013176 252 -----------VVTEAEKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRS 320 (448)
Q Consensus 252 -----------~~~~~~~~~~l~~~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 320 (448)
......+...+...+.....+.+++|||.+..++..++..+...+. +..+++..+..+|..+++.|+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~ 330 (442)
T COG1061 252 TLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRT 330 (442)
T ss_pred hhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHc
Confidence 0001112222333333322467999999999999999999988877 8899999999999999999999
Q ss_pred CCCCEEEEeccccCCCCCCCccEEEEcCCCCChhhhhhcccccCCC
Q 013176 321 GRSPIMTATDVAARGLDVKDIKCVVNYDFPTSLEDYVHRIGRTGRA 366 (448)
Q Consensus 321 g~~~vLv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~ 366 (448)
|..++|+++.++.+|+|+|+++++|...+..|...|+|++||.-|.
T Consensus 331 g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 331 GGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRP 376 (442)
T ss_pred CCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccC
Confidence 9999999999999999999999999999999999999999999993
No 81
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=1.4e-31 Score=272.93 Aligned_cols=333 Identities=18% Similarity=0.168 Sum_probs=218.6
Q ss_pred CCcHHHHhHHHHhhcC--CcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcC
Q 013176 49 EPTPIQAQGWPMALKG--RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSR 126 (448)
Q Consensus 49 ~~~~~Q~~~i~~~~~~--~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~ 126 (448)
.|.|||.+++..+... .++++..++|.|||+.+.+.+...+... ...++||+||. .|..||..++.+..
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g------~~~rvLIVvP~-sL~~QW~~El~~kF-- 222 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTG------RAERVLILVPE-TLQHQWLVEMLRRF-- 222 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcC------CCCcEEEEcCH-HHHHHHHHHHHHHh--
Confidence 5999999999887654 4799999999999998766554443331 24579999995 89999999996532
Q ss_pred CCceEEEEEcCCCchHhH---HHHhcCCcEEEEccHHHHHHHH-ccccCCCCccEEEEecccccccCC--CHHHHHHHHH
Q 013176 127 AGIRSTCIYGGAPKGPQI---RDLRRGVEIVIATPGRLIDMLE-AQHTNLRRVTYLVLDEADRMLDMG--FEPQIRKIVT 200 (448)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~---~~~~~~~~iiv~T~~~l~~~~~-~~~~~~~~~~~iIvDE~h~~~~~~--~~~~~~~~~~ 200 (448)
++....+.++. ..... .......+++|+|++.+...-. .....-..++++||||||++.... ....+..+..
T Consensus 223 -~l~~~i~~~~~-~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~ 300 (956)
T PRK04914 223 -NLRFSLFDEER-YAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQ 300 (956)
T ss_pred -CCCeEEEcCcc-hhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHH
Confidence 33333332221 11000 0111236799999988764211 111223468999999999986321 1223443433
Q ss_pred HcCCCcceEEEeccCchH-------------------HHHHH-------------H-----------------HHcCCCe
Q 013176 201 QIRPDRQTLYWSATWPRE-------------------VETLA-------------R-----------------QFLRNPY 231 (448)
Q Consensus 201 ~~~~~~~~v~~SAT~~~~-------------------~~~~~-------------~-----------------~~~~~~~ 231 (448)
.......++++||||... ...+. . .++.+..
T Consensus 301 La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~ 380 (956)
T PRK04914 301 LAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQD 380 (956)
T ss_pred HhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccc
Confidence 333456789999997420 00110 0 0000000
Q ss_pred ---------------------------------EEEeCCcc--cc-cccCcceEEEE-----------------------
Q 013176 232 ---------------------------------KVIIGSLE--LK-ANQSINQVVEV----------------------- 252 (448)
Q Consensus 232 ---------------------------------~~~~~~~~--~~-~~~~~~~~~~~----------------------- 252 (448)
.+...... .. .+......+..
T Consensus 381 ~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~l~ 460 (956)
T PRK04914 381 IEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDMLY 460 (956)
T ss_pred hhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhhcC
Confidence 00000000 00 00000000000
Q ss_pred --------------ecchhHHHHHHHHHHhhhcCCcEEEEecchhHHHHHHHHHH-hCCCCeEEEcCCCCHHHHHHHHHH
Q 013176 253 --------------VTEAEKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLR-MDGWPALSIHGDKNQSERDWVLAE 317 (448)
Q Consensus 253 --------------~~~~~~~~~l~~~l~~~~~~~k~lVf~~~~~~~~~l~~~L~-~~~~~~~~~~~~~~~~~r~~~~~~ 317 (448)
.....|.+.|.++++.. .+.|+||||+++..+..+++.|+ ..|+++..+||+|+..+|.++++.
T Consensus 461 pe~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~-~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~ 539 (956)
T PRK04914 461 PEQIYQEFEDNATWWNFDPRVEWLIDFLKSH-RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAY 539 (956)
T ss_pred HHHHHHHHhhhhhccccCHHHHHHHHHHHhc-CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHH
Confidence 01123445566666543 36799999999999999999994 569999999999999999999999
Q ss_pred HhcC--CCCEEEEeccccCCCCCCCccEEEEcCCCCChhhhhhcccccCCCCCCceEEEEecCCChHHHHHHHHHHHH
Q 013176 318 FRSG--RSPIMTATDVAARGLDVKDIKCVVNYDFPTSLEDYVHRIGRTGRAGARGTAFTFFTHSNAKFARDLIKILQE 393 (448)
Q Consensus 318 f~~g--~~~vLv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~ 393 (448)
|+++ ..+|||||++.++|+|++.+++||+||+|+++..|.||+||++|.|+.+.+.+++...+....+.+.+++.+
T Consensus 540 F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~ 617 (956)
T PRK04914 540 FADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHE 617 (956)
T ss_pred HhcCCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhh
Confidence 9974 589999999999999999999999999999999999999999999999988777765555555555555544
No 82
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=3.9e-33 Score=248.62 Aligned_cols=275 Identities=32% Similarity=0.537 Sum_probs=214.5
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhhcCC---CceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccE
Q 013176 101 PIVLVLAPTRELAVQIQEEALKFGSRA---GIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTY 177 (448)
Q Consensus 101 ~~vlil~P~~~L~~q~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~ 177 (448)
+..+|+-|+++|++|....+++|-... .++...+.++...+.+...+..+.+|+|+||.++.+.+....+.+..+.+
T Consensus 287 p~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~crF 366 (725)
T KOG0349|consen 287 PEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCRF 366 (725)
T ss_pred cceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeEE
Confidence 678999999999999999777764433 45666788888888999999999999999999999999999999999999
Q ss_pred EEEecccccccCCCHHHHHHHHHHcC------CCcceEEEeccCch-HHHHHHHHHcCCCeEEEeCCcccccccCcceEE
Q 013176 178 LVLDEADRMLDMGFEPQIRKIVTQIR------PDRQTLYWSATWPR-EVETLARQFLRNPYKVIIGSLELKANQSINQVV 250 (448)
Q Consensus 178 iIvDE~h~~~~~~~~~~~~~~~~~~~------~~~~~v~~SAT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (448)
+++||++.++..++...+.++...++ ...|.++.|||+.. ++..+..+.+.-|..+.....+..+. ..+..+
T Consensus 367 lvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpe-tvHhvv 445 (725)
T KOG0349|consen 367 LVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPE-TVHHVV 445 (725)
T ss_pred EEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccch-hhccce
Confidence 99999999999888888888876664 24578899999753 23344555555566555433332111 111111
Q ss_pred EE-ec-----------------------------chhHHHHHHHH---------HHhhhcCCcEEEEecchhHHHHHHHH
Q 013176 251 EV-VT-----------------------------EAEKYNRLIKL---------LKEVMDGSRILIFTETKKGCDQVTRQ 291 (448)
Q Consensus 251 ~~-~~-----------------------------~~~~~~~l~~~---------l~~~~~~~k~lVf~~~~~~~~~l~~~ 291 (448)
.. .+ .++.......+ +++. .-.+.||||.++.+|..+.++
T Consensus 446 ~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h-~mdkaiifcrtk~dcDnLer~ 524 (725)
T KOG0349|consen 446 KLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRH-AMDKAIIFCRTKQDCDNLERM 524 (725)
T ss_pred eecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhh-ccCceEEEEeccccchHHHHH
Confidence 11 10 01111111112 2221 235899999999999999999
Q ss_pred HHhCC---CCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCCCccEEEEcCCCCChhhhhhcccccCCCCC
Q 013176 292 LRMDG---WPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVKDIKCVVNYDFPTSLEDYVHRIGRTGRAGA 368 (448)
Q Consensus 292 L~~~~---~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~ 368 (448)
+.+.+ +.+..+|++..+.+|.+-++.|+.++.++||||+++++|+|+..+-.+|+..+|.+-..|.||+||+||..+
T Consensus 525 ~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgraer 604 (725)
T KOG0349|consen 525 MNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAER 604 (725)
T ss_pred HHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhhh
Confidence 98873 578899999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CceEEEEec
Q 013176 369 RGTAFTFFT 377 (448)
Q Consensus 369 ~g~~~~~~~ 377 (448)
-|.++.++.
T Consensus 605 mglaislva 613 (725)
T KOG0349|consen 605 MGLAISLVA 613 (725)
T ss_pred cceeEEEee
Confidence 888887765
No 83
>PRK09694 helicase Cas3; Provisional
Probab=100.00 E-value=8.9e-31 Score=265.46 Aligned_cols=310 Identities=17% Similarity=0.220 Sum_probs=202.0
Q ss_pred CCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCC-
Q 013176 49 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRA- 127 (448)
Q Consensus 49 ~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~- 127 (448)
.|+|+|+.+.........+++.+|||+|||.++++++...+... ....++|..||++++.|+++++.++....
T Consensus 286 ~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~------~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f 359 (878)
T PRK09694 286 QPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQG------LADSIIFALPTQATANAMLSRLEALASKLF 359 (878)
T ss_pred CChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhC------CCCeEEEECcHHHHHHHHHHHHHHHHHHhc
Confidence 89999998755443455688899999999999877665443321 24679999999999999999988643211
Q ss_pred -CceEEEEEcCCCchHhH--------------------HHHh----c---CCcEEEEccHHHHHHHHccc-cCCCCc---
Q 013176 128 -GIRSTCIYGGAPKGPQI--------------------RDLR----R---GVEIVIATPGRLIDMLEAQH-TNLRRV--- 175 (448)
Q Consensus 128 -~~~~~~~~~~~~~~~~~--------------------~~~~----~---~~~iiv~T~~~l~~~~~~~~-~~~~~~--- 175 (448)
...+...+|........ .... + -.+|+|||.++++..+...+ ..++.+
T Consensus 360 ~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La 439 (878)
T PRK09694 360 PSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLG 439 (878)
T ss_pred CCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhc
Confidence 23556666544311100 0111 1 26899999999985544322 222222
Q ss_pred -cEEEEecccccccCCCHHHHHHHHHHc-CCCcceEEEeccCchHHHHHHHHHcCCC--------eEEEe-C------Cc
Q 013176 176 -TYLVLDEADRMLDMGFEPQIRKIVTQI-RPDRQTLYWSATWPREVETLARQFLRNP--------YKVII-G------SL 238 (448)
Q Consensus 176 -~~iIvDE~h~~~~~~~~~~~~~~~~~~-~~~~~~v~~SAT~~~~~~~~~~~~~~~~--------~~~~~-~------~~ 238 (448)
++|||||+|.+... ....+..+++.+ ....++|+||||+|..........+... +.... . ..
T Consensus 440 ~svvIiDEVHAyD~y-m~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~ 518 (878)
T PRK09694 440 RSVLIVDEVHAYDAY-MYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQRF 518 (878)
T ss_pred cCeEEEechhhCCHH-HHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccceee
Confidence 58999999987442 233444444443 2456799999999987655443322211 00000 0 00
Q ss_pred ccccc---cCcceEEEE--e--cc-hhHHHHHHHHHHhhhcCCcEEEEecchhHHHHHHHHHHhCC---CCeEEEcCCCC
Q 013176 239 ELKAN---QSINQVVEV--V--TE-AEKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDG---WPALSIHGDKN 307 (448)
Q Consensus 239 ~~~~~---~~~~~~~~~--~--~~-~~~~~~l~~~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~ 307 (448)
..... ......+.. . .. ......+..+++....+++++|||||++.|..+++.|++.. .++..+|+.++
T Consensus 519 ~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~ 598 (878)
T PRK09694 519 DLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFT 598 (878)
T ss_pred eccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCC
Confidence 00000 001111111 1 10 11122233334444567899999999999999999998764 57999999999
Q ss_pred HHHHH----HHHHHH-hcCC---CCEEEEeccccCCCCCCCccEEEEcCCCCChhhhhhcccccCCCCC
Q 013176 308 QSERD----WVLAEF-RSGR---SPIMTATDVAARGLDVKDIKCVVNYDFPTSLEDYVHRIGRTGRAGA 368 (448)
Q Consensus 308 ~~~r~----~~~~~f-~~g~---~~vLv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~ 368 (448)
..+|. ++++.| ++|+ ..|||+|++++.|+|+ +++++|....| .+.++||+||++|.+.
T Consensus 599 ~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 599 LNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred HHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 99984 567778 5665 4799999999999999 58999988777 4899999999999875
No 84
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=9.3e-32 Score=277.89 Aligned_cols=303 Identities=22% Similarity=0.319 Sum_probs=208.5
Q ss_pred cHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCc----HHHHHHHHHHHHH-hhc
Q 013176 51 TPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPT----RELAVQIQEEALK-FGS 125 (448)
Q Consensus 51 ~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~----~~L~~q~~~~~~~-~~~ 125 (448)
+.+-.++++.+..++.++++|+||||||. .+|.+...... +....+++..|+ ++|+.++++++.. ++.
T Consensus 76 ~~~r~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g~-----g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~ 148 (1294)
T PRK11131 76 SQKKQDILEAIRDHQVVIVAGETGSGKTT--QLPKICLELGR-----GVKGLIGHTQPRRLAARTVANRIAEELETELGG 148 (1294)
T ss_pred HHHHHHHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcCC-----CCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcc
Confidence 44455777777777888899999999998 46643332211 112346666674 5777777777764 333
Q ss_pred CCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEeccc-ccccCCCHHH-HHHHHHHcC
Q 013176 126 RAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEAD-RMLDMGFEPQ-IRKIVTQIR 203 (448)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h-~~~~~~~~~~-~~~~~~~~~ 203 (448)
..++.+. . ......+++|+|+||+.|++.+... ..+.++++||+||+| +.++.+|... ++.++.. .
T Consensus 149 ~VGY~vr----f------~~~~s~~t~I~v~TpG~LL~~l~~d-~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~-r 216 (1294)
T PRK11131 149 CVGYKVR----F------NDQVSDNTMVKLMTDGILLAEIQQD-RLLMQYDTIIIDEAHERSLNIDFILGYLKELLPR-R 216 (1294)
T ss_pred eeceeec----C------ccccCCCCCEEEEChHHHHHHHhcC-CccccCcEEEecCccccccccchHHHHHHHhhhc-C
Confidence 3333221 0 0112346789999999999988765 348899999999999 5677665532 3333322 2
Q ss_pred CCcceEEEeccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceEEEEecc------hhHHHHHHHHHHhh--hcCCcE
Q 013176 204 PDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTE------AEKYNRLIKLLKEV--MDGSRI 275 (448)
Q Consensus 204 ~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~l~~~--~~~~k~ 275 (448)
++.|+++||||++. +.+...+...+. +.+.... ..+...+..... .+....+...+... ...+.+
T Consensus 217 pdlKvILmSATid~--e~fs~~F~~apv-I~V~Gr~----~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdI 289 (1294)
T PRK11131 217 PDLKVIITSATIDP--ERFSRHFNNAPI-IEVSGRT----YPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDI 289 (1294)
T ss_pred CCceEEEeeCCCCH--HHHHHHcCCCCE-EEEcCcc----ccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCE
Confidence 56899999999964 356665554443 3322111 112222222211 22334444433322 234689
Q ss_pred EEEecchhHHHHHHHHHHhCCCC---eEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCCCccEEEEcCC---
Q 013176 276 LIFTETKKGCDQVTRQLRMDGWP---ALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVKDIKCVVNYDF--- 349 (448)
Q Consensus 276 lVf~~~~~~~~~l~~~L~~~~~~---~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~Vi~~~~--- 349 (448)
|||+++..+++.+++.|++.+++ +..+|++++.++|..+++. .|..+|||||+++++|||+|++++||+++.
T Consensus 290 LVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~ 367 (1294)
T PRK11131 290 LIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARI 367 (1294)
T ss_pred EEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccc
Confidence 99999999999999999987654 6789999999999999876 478899999999999999999999999863
Q ss_pred ------------C---CChhhhhhcccccCCCCCCceEEEEecCCChH
Q 013176 350 ------------P---TSLEDYVHRIGRTGRAGARGTAFTFFTHSNAK 382 (448)
Q Consensus 350 ------------p---~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~ 382 (448)
| .|.++|.||+||+||. .+|.|+.++++.+..
T Consensus 368 ~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~~ 414 (1294)
T PRK11131 368 SRYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDFL 414 (1294)
T ss_pred cccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHHH
Confidence 3 2557899999999999 789999999876543
No 85
>PRK05580 primosome assembly protein PriA; Validated
Probab=100.00 E-value=9.4e-31 Score=263.56 Aligned_cols=312 Identities=20% Similarity=0.230 Sum_probs=216.8
Q ss_pred CCcHHHHhHHHHhhcC---CcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhc
Q 013176 49 EPTPIQAQGWPMALKG---RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGS 125 (448)
Q Consensus 49 ~~~~~Q~~~i~~~~~~---~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~ 125 (448)
.|+++|+++++.+..+ +++++.++||||||.+|+.++...+.. +.+++|++|+++|+.|+.+.+++..
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~--------g~~vLvLvPt~~L~~Q~~~~l~~~f- 214 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ--------GKQALVLVPEIALTPQMLARFRARF- 214 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc--------CCeEEEEeCcHHHHHHHHHHHHHHh-
Confidence 6899999999999874 689999999999999998877666544 5679999999999999999998753
Q ss_pred CCCceEEEEEcCCCchHhH---HHHh-cCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCC-----C-HHHH
Q 013176 126 RAGIRSTCIYGGAPKGPQI---RDLR-RGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMG-----F-EPQI 195 (448)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~---~~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~-----~-~~~~ 195 (448)
+.++..++++.+..+.. ..+. ..++|+|+|+..++ ..+.++++||+||+|...... + ...+
T Consensus 215 --g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~v 285 (679)
T PRK05580 215 --GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDL 285 (679)
T ss_pred --CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCcHHHH
Confidence 56788888887665443 3333 35799999997763 346789999999999765432 1 1122
Q ss_pred HHHHHHcCCCcceEEEeccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceEEEEecc------hhHHHHHHHHHHhh
Q 013176 196 RKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTE------AEKYNRLIKLLKEV 269 (448)
Q Consensus 196 ~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~l~~~ 269 (448)
. +.+....+.+++++|||++......+. -+.....................+..... ......+.+.+++.
T Consensus 286 a-~~ra~~~~~~~il~SATps~~s~~~~~--~g~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~~ 362 (679)
T PRK05580 286 A-VVRAKLENIPVVLGSATPSLESLANAQ--QGRYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIKQR 362 (679)
T ss_pred H-HHHhhccCCCEEEEcCCCCHHHHHHHh--ccceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHHHH
Confidence 2 223334678999999998765444332 12222222221110010001111111000 00113344444443
Q ss_pred h-cCCcEEEEecchh------------------------------------------------------------HHHHH
Q 013176 270 M-DGSRILIFTETKK------------------------------------------------------------GCDQV 288 (448)
Q Consensus 270 ~-~~~k~lVf~~~~~------------------------------------------------------------~~~~l 288 (448)
. .++++|||+|++. .++.+
T Consensus 363 l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~ 442 (679)
T PRK05580 363 LERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERL 442 (679)
T ss_pred HHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHH
Confidence 3 4668999988631 45577
Q ss_pred HHHHHhC--CCCeEEEcCCCC--HHHHHHHHHHHhcCCCCEEEEeccccCCCCCCCccEEEEcCCCC--C----------
Q 013176 289 TRQLRMD--GWPALSIHGDKN--QSERDWVLAEFRSGRSPIMTATDVAARGLDVKDIKCVVNYDFPT--S---------- 352 (448)
Q Consensus 289 ~~~L~~~--~~~~~~~~~~~~--~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~Vi~~~~p~--s---------- 352 (448)
++.|++. +.++..+|+++. .++++++++.|++|+.+|||+|++++.|+|+|++++|+.++.+. +
T Consensus 443 ~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~ 522 (679)
T PRK05580 443 EEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERT 522 (679)
T ss_pred HHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHH
Confidence 7777775 678899999986 46788999999999999999999999999999999997666442 2
Q ss_pred hhhhhhcccccCCCCCCceEEEEecCCCh
Q 013176 353 LEDYVHRIGRTGRAGARGTAFTFFTHSNA 381 (448)
Q Consensus 353 ~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 381 (448)
...|.|++||+||.+..|.+++.....+.
T Consensus 523 ~~~l~q~~GRagR~~~~g~viiqT~~p~~ 551 (679)
T PRK05580 523 FQLLTQVAGRAGRAEKPGEVLIQTYHPEH 551 (679)
T ss_pred HHHHHHHHhhccCCCCCCEEEEEeCCCCC
Confidence 25799999999999889999876654443
No 86
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=100.00 E-value=7.7e-31 Score=228.94 Aligned_cols=202 Identities=54% Similarity=0.873 Sum_probs=181.2
Q ss_pred cccCCCCHHHHHHHHHCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcC
Q 013176 29 FQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAP 108 (448)
Q Consensus 29 ~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P 108 (448)
|+++++++.+.+.+..+|+..|+++|.++++.+.+++++++++|||+|||++|+++++..+.... ...+++++|++|
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~---~~~~~~viii~p 77 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP---KKDGPQALILAP 77 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc---ccCCceEEEEcC
Confidence 67899999999999999999999999999999999999999999999999999999999887742 123678999999
Q ss_pred cHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEeccccccc
Q 013176 109 TRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLD 188 (448)
Q Consensus 109 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~ 188 (448)
+++|+.|+.+.++.+....++.+..++++.........+..+++|+|+||+.+...+.+....+.+++++|+||+|.+.+
T Consensus 78 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~ 157 (203)
T cd00268 78 TRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLD 157 (203)
T ss_pred CHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhc
Confidence 99999999999999988778899999998877666666666899999999999999888877888999999999999988
Q ss_pred CCCHHHHHHHHHHcCCCcceEEEeccCchHHHHHHHHHcCCCeEE
Q 013176 189 MGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKV 233 (448)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~ 233 (448)
.++...+..+...++...+++++|||+++....+...++.++..+
T Consensus 158 ~~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 158 MGFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred cChHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 888889999999888899999999999999988888888877654
No 87
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=100.00 E-value=8.1e-30 Score=221.41 Aligned_cols=311 Identities=18% Similarity=0.230 Sum_probs=224.8
Q ss_pred CCcHHHHhHHHHhh----cCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhh
Q 013176 49 EPTPIQAQGWPMAL----KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (448)
Q Consensus 49 ~~~~~Q~~~i~~~~----~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~ 124 (448)
.+++.|+.+-..+. +.++.+++|-||+|||.. ++..++.+.++ +.++.+..|+...+-+++.+++.-
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEM-if~~i~~al~~-------G~~vciASPRvDVclEl~~Rlk~a- 167 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEM-IFQGIEQALNQ-------GGRVCIASPRVDVCLELYPRLKQA- 167 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhh-hHHHHHHHHhc-------CCeEEEecCcccchHHHHHHHHHh-
Confidence 68999998776655 457999999999999986 66666666664 888999999999999999999874
Q ss_pred cCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCCCHHHHHHHHHHcCC
Q 013176 125 SRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRP 204 (448)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~ 204 (448)
+.+..+..++|++..... .+++|+|.++|+++.. .++++||||+|.+.-................
T Consensus 168 -F~~~~I~~Lyg~S~~~fr-------~plvVaTtHQLlrFk~-------aFD~liIDEVDAFP~~~d~~L~~Av~~ark~ 232 (441)
T COG4098 168 -FSNCDIDLLYGDSDSYFR-------APLVVATTHQLLRFKQ-------AFDLLIIDEVDAFPFSDDQSLQYAVKKARKK 232 (441)
T ss_pred -hccCCeeeEecCCchhcc-------ccEEEEehHHHHHHHh-------hccEEEEeccccccccCCHHHHHHHHHhhcc
Confidence 345678889987754222 5799999999988644 3889999999987654433334444455556
Q ss_pred CcceEEEeccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceEEEEecchhHHH------HHHHHHHhhhc-CCcEEE
Q 013176 205 DRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYN------RLIKLLKEVMD-GSRILI 277 (448)
Q Consensus 205 ~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~l~~~l~~~~~-~~k~lV 277 (448)
..-.+++|||++..++.-+.. ++...+.+.......+..+-..+-..+...++. .+..+++.... +.+++|
T Consensus 233 ~g~~IylTATp~k~l~r~~~~--g~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~li 310 (441)
T COG4098 233 EGATIYLTATPTKKLERKILK--GNLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLI 310 (441)
T ss_pred cCceEEEecCChHHHHHHhhh--CCeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEE
Confidence 677899999998776554432 223333333333233333333333333333332 45666665444 679999
Q ss_pred EecchhHHHHHHHHHHhC--CCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCCCccEEEEcCCC--CCh
Q 013176 278 FTETKKGCDQVTRQLRMD--GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVKDIKCVVNYDFP--TSL 353 (448)
Q Consensus 278 f~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~Vi~~~~p--~s~ 353 (448)
|+++++..+.+++.|++. ...++.+|+... .|.+..+.|++|+.++|++|.++++|+.+|++++.|.-.-. .+-
T Consensus 311 F~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d~--~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTe 388 (441)
T COG4098 311 FFPEIETMEQVAAALKKKLPKETIASVHSEDQ--HRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTE 388 (441)
T ss_pred EecchHHHHHHHHHHHhhCCccceeeeeccCc--cHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccccH
Confidence 999999999999999654 334567777544 78889999999999999999999999999999997765543 477
Q ss_pred hhhhhcccccCCCCC--CceEEEEecCCChHHHHHH
Q 013176 354 EDYVHRIGRTGRAGA--RGTAFTFFTHSNAKFARDL 387 (448)
Q Consensus 354 ~~~~Q~~GR~~R~g~--~g~~~~~~~~~~~~~~~~l 387 (448)
+.++|.+||+||.-. .|.+..|..-..+.+.+..
T Consensus 389 saLVQIaGRvGRs~~~PtGdv~FFH~G~skaM~~A~ 424 (441)
T COG4098 389 SALVQIAGRVGRSLERPTGDVLFFHYGKSKAMKQAR 424 (441)
T ss_pred HHHHHHhhhccCCCcCCCCcEEEEeccchHHHHHHH
Confidence 899999999999744 4666666555555554443
No 88
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=2.2e-29 Score=250.26 Aligned_cols=322 Identities=19% Similarity=0.236 Sum_probs=230.3
Q ss_pred HCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013176 44 KLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (448)
Q Consensus 44 ~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~ 123 (448)
..|. .|+++|.-.--.+ ++.-+..++||+|||++|.+|++..+.. +..++|++||+.||.|.++++..+
T Consensus 78 ~lg~-~~ydvQliGg~~L--h~G~Iaem~TGeGKTL~a~Lpa~~~al~--------G~~V~VvTpn~yLA~qd~e~m~~l 146 (896)
T PRK13104 78 TLGL-RHFDVQLIGGMVL--HEGNIAEMRTGEGKTLVATLPAYLNAIS--------GRGVHIVTVNDYLAKRDSQWMKPI 146 (896)
T ss_pred HcCC-CcchHHHhhhhhh--ccCccccccCCCCchHHHHHHHHHHHhc--------CCCEEEEcCCHHHHHHHHHHHHHH
Confidence 3577 6777775554444 4456899999999999999999977654 445999999999999999999999
Q ss_pred hcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHH-HHHHHccc-cCC-----CCccEEEEecccccccCC------
Q 013176 124 GSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRL-IDMLEAQH-TNL-----RRVTYLVLDEADRMLDMG------ 190 (448)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~~~~~~-~~~-----~~~~~iIvDE~h~~~~~~------ 190 (448)
...+++++.+++++.+.......+ .++|+|+||..| ++++.... ..+ ..+.++|+||+|.++-..
T Consensus 147 ~~~lGLtv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLI 224 (896)
T PRK13104 147 YEFLGLTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLI 224 (896)
T ss_pred hcccCceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCcee
Confidence 999999999999987765554443 689999999999 88887652 233 578999999999765100
Q ss_pred ----------CHHHHHHHHHHcCC--------------Cc----------------------------------------
Q 013176 191 ----------FEPQIRKIVTQIRP--------------DR---------------------------------------- 206 (448)
Q Consensus 191 ----------~~~~~~~~~~~~~~--------------~~---------------------------------------- 206 (448)
....+..+...+.. ..
T Consensus 225 ISg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~ 304 (896)
T PRK13104 225 ISGAAEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHH 304 (896)
T ss_pred eeCCCccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHH
Confidence 00111111111111 11
Q ss_pred ----------------------------------------------------------------------------ceEE
Q 013176 207 ----------------------------------------------------------------------------QTLY 210 (448)
Q Consensus 207 ----------------------------------------------------------------------------~~v~ 210 (448)
++-+
T Consensus 305 i~~aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsG 384 (896)
T PRK13104 305 VNAALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSG 384 (896)
T ss_pred HHHHHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhcc
Confidence 2223
Q ss_pred EeccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceEEEEecchhHHHHHHHHHHhh-hcCCcEEEEecchhHHHHHH
Q 013176 211 WSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKEV-MDGSRILIFTETKKGCDQVT 289 (448)
Q Consensus 211 ~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~k~lVf~~~~~~~~~l~ 289 (448)
||+|.......+... ++-++. .++...+..+.. .....+.+...|+..+.+.+.+. ..+.++||||++++.++.++
T Consensus 385 MTGTa~te~~Ef~~i-Y~l~Vv-~IPtnkp~~R~d-~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls 461 (896)
T PRK13104 385 MTGTADTEAYEFQQI-YNLEVV-VIPTNRSMIRKD-EADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLS 461 (896)
T ss_pred CCCCChhHHHHHHHH-hCCCEE-ECCCCCCcceec-CCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHH
Confidence 333332222222211 111111 111111111111 11233345667887777766554 45789999999999999999
Q ss_pred HHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCCC-----------------------------
Q 013176 290 RQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVKD----------------------------- 340 (448)
Q Consensus 290 ~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~----------------------------- 340 (448)
+.|++.++++.++|+.+.+.++..+.+.|+.|. |+|||+++++|+|+.=
T Consensus 462 ~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (896)
T PRK13104 462 QLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQK 539 (896)
T ss_pred HHHHHcCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhh
Confidence 999999999999999999999999999999995 9999999999999861
Q ss_pred ---------ccEEEEcCCCCChhhhhhcccccCCCCCCceEEEEecCCChHH
Q 013176 341 ---------IKCVVNYDFPTSLEDYVHRIGRTGRAGARGTAFTFFTHSNAKF 383 (448)
Q Consensus 341 ---------~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 383 (448)
==+||-...+.|..--.|..||+||.|.+|.+..|++-.|.-+
T Consensus 540 ~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~l~ 591 (896)
T PRK13104 540 RHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDNLM 591 (896)
T ss_pred hhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHHH
Confidence 1168888888899999999999999999999999998776654
No 89
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.97 E-value=1.6e-29 Score=245.86 Aligned_cols=290 Identities=19% Similarity=0.240 Sum_probs=194.9
Q ss_pred EEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHh---H
Q 013176 68 IGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQ---I 144 (448)
Q Consensus 68 lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 144 (448)
++.++||||||.+|+..+...+.. +.+++|++|+++|+.|+.+.+++.. +.++..++++.+..+. +
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~--------g~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~~~~ 69 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLAL--------GKSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEKLQAW 69 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHc--------CCeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHHHHHH
Confidence 478999999999987655444433 6679999999999999999998753 4567788887765443 3
Q ss_pred HHHh-cCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCC-----C-HHHHHHHHHHcCCCcceEEEeccCch
Q 013176 145 RDLR-RGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMG-----F-EPQIRKIVTQIRPDRQTLYWSATWPR 217 (448)
Q Consensus 145 ~~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~-----~-~~~~~~~~~~~~~~~~~v~~SAT~~~ 217 (448)
..+. ...+|+|+|+..++ ..+.++++|||||.|....++ | ...+..+... ..+.+++++|||++.
T Consensus 70 ~~~~~g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~-~~~~~vil~SATPsl 141 (505)
T TIGR00595 70 RKVKNGEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAK-KFNCPVVLGSATPSL 141 (505)
T ss_pred HHHHcCCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHH-hcCCCEEEEeCCCCH
Confidence 3333 35799999987763 346788999999999876433 1 1223333333 367889999999765
Q ss_pred HHHHHHHHHcCCCeEEEeCCcccccccCcceEEEEecch---hHHHHHHHHHHhhh-cCCcEEEEecchhH---------
Q 013176 218 EVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEA---EKYNRLIKLLKEVM-DGSRILIFTETKKG--------- 284 (448)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~l~~~~-~~~k~lVf~~~~~~--------- 284 (448)
+....+. -+.....................+...... .-...+.+.+++.. .++++|||+|++..
T Consensus 142 es~~~~~--~g~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~~C 219 (505)
T TIGR00595 142 ESYHNAK--QKAYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRSC 219 (505)
T ss_pred HHHHHHh--cCCeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhhhC
Confidence 4433332 122221111111101111111111111111 11123444444333 46789999887642
Q ss_pred ---------------------------------------------------HHHHHHHHHhC--CCCeEEEcCCCCHHHH
Q 013176 285 ---------------------------------------------------CDQVTRQLRMD--GWPALSIHGDKNQSER 311 (448)
Q Consensus 285 ---------------------------------------------------~~~l~~~L~~~--~~~~~~~~~~~~~~~r 311 (448)
.+.+++.|++. +.++..+|++++...+
T Consensus 220 g~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~ 299 (505)
T TIGR00595 220 GYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKG 299 (505)
T ss_pred cCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCcc
Confidence 46777788776 6789999999876655
Q ss_pred --HHHHHHHhcCCCCEEEEeccccCCCCCCCccEEEEcCCCC------------ChhhhhhcccccCCCCCCceEEEEec
Q 013176 312 --DWVLAEFRSGRSPIMTATDVAARGLDVKDIKCVVNYDFPT------------SLEDYVHRIGRTGRAGARGTAFTFFT 377 (448)
Q Consensus 312 --~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~Vi~~~~p~------------s~~~~~Q~~GR~~R~g~~g~~~~~~~ 377 (448)
..+++.|++|+.+|||+|++++.|+|+|++++|+.++... ....|.|++||+||.+..|.+++...
T Consensus 300 ~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~ 379 (505)
T TIGR00595 300 AHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTY 379 (505)
T ss_pred HHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEeC
Confidence 8899999999999999999999999999999987555432 24678999999999988898876543
Q ss_pred C
Q 013176 378 H 378 (448)
Q Consensus 378 ~ 378 (448)
.
T Consensus 380 ~ 380 (505)
T TIGR00595 380 N 380 (505)
T ss_pred C
Confidence 3
No 90
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=6.5e-29 Score=246.67 Aligned_cols=322 Identities=22% Similarity=0.243 Sum_probs=238.0
Q ss_pred HCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013176 44 KLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (448)
Q Consensus 44 ~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~ 123 (448)
.+|+ .|++.|.-..-.+.+| -+..+.||+|||+++.+|++..... +..+-|++||..||.|.++++..+
T Consensus 77 ~lg~-~~~dvQlig~l~L~~G--~Iaem~TGeGKTLva~lpa~l~aL~--------G~~V~IvTpn~yLA~rd~e~~~~l 145 (830)
T PRK12904 77 VLGM-RHFDVQLIGGMVLHEG--KIAEMKTGEGKTLVATLPAYLNALT--------GKGVHVVTVNDYLAKRDAEWMGPL 145 (830)
T ss_pred HhCC-CCCccHHHhhHHhcCC--chhhhhcCCCcHHHHHHHHHHHHHc--------CCCEEEEecCHHHHHHHHHHHHHH
Confidence 3677 7888887666665554 5889999999999999999644333 334779999999999999999999
Q ss_pred hcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHH-HHHHHcccc------CCCCccEEEEecccccccCC------
Q 013176 124 GSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRL-IDMLEAQHT------NLRRVTYLVLDEADRMLDMG------ 190 (448)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~~~~~~~------~~~~~~~iIvDE~h~~~~~~------ 190 (448)
...+++++.++.++.+..+....+ .++|+++||..| ++++..... ..+.+.++||||+|.++-..
T Consensus 146 ~~~LGlsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLi 223 (830)
T PRK12904 146 YEFLGLSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLI 223 (830)
T ss_pred HhhcCCeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCcee
Confidence 999999999999988776555554 489999999999 888876542 36778999999999755100
Q ss_pred ----------CHHHHHHHHHHcCC--------------------------------------------------------
Q 013176 191 ----------FEPQIRKIVTQIRP-------------------------------------------------------- 204 (448)
Q Consensus 191 ----------~~~~~~~~~~~~~~-------------------------------------------------------- 204 (448)
....+..+...+..
T Consensus 224 iSg~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~ 303 (830)
T PRK12904 224 ISGPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKR 303 (830)
T ss_pred eECCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhc
Confidence 00011111111100
Q ss_pred -------------------------------------------------------------CcceEEEeccCchHHHHHH
Q 013176 205 -------------------------------------------------------------DRQTLYWSATWPREVETLA 223 (448)
Q Consensus 205 -------------------------------------------------------------~~~~v~~SAT~~~~~~~~~ 223 (448)
..++.+||+|.......+.
T Consensus 304 d~dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~ 383 (830)
T PRK12904 304 DVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFR 383 (830)
T ss_pred CCcEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHH
Confidence 0155567777654433333
Q ss_pred HHHcCCCeEEEeCCcccccccCcceEEEEecchhHHHHHHHHHHhh-hcCCcEEEEecchhHHHHHHHHHHhCCCCeEEE
Q 013176 224 RQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKEV-MDGSRILIFTETKKGCDQVTRQLRMDGWPALSI 302 (448)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~ 302 (448)
. .++-++.. ++...+...... ....+.+...|+..+.+.+.+. ..+.++||||++++.++.+++.|.+.++++..+
T Consensus 384 ~-iY~l~vv~-IPtnkp~~r~d~-~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vL 460 (830)
T PRK12904 384 E-IYNLDVVV-IPTNRPMIRIDH-PDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVL 460 (830)
T ss_pred H-HhCCCEEE-cCCCCCeeeeeC-CCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEec
Confidence 3 33322222 222211111111 1233446677888888888663 457799999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCCCc--------------------------------------cEE
Q 013176 303 HGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVKDI--------------------------------------KCV 344 (448)
Q Consensus 303 ~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~--------------------------------------~~V 344 (448)
|+. +.+|+..+..|+.+...|+|||+++++|+||+=- =+|
T Consensus 461 nak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhV 538 (830)
T PRK12904 461 NAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHV 538 (830)
T ss_pred cCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEE
Confidence 995 6789999999999999999999999999999632 168
Q ss_pred EEcCCCCChhhhhhcccccCCCCCCceEEEEecCCChHH
Q 013176 345 VNYDFPTSLEDYVHRIGRTGRAGARGTAFTFFTHSNAKF 383 (448)
Q Consensus 345 i~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 383 (448)
|....|.|..--.|..||+||.|.+|.+..|++-.|.-+
T Consensus 539 igTerhesrRid~QlrGRagRQGdpGss~f~lSleD~l~ 577 (830)
T PRK12904 539 IGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLM 577 (830)
T ss_pred EecccCchHHHHHHhhcccccCCCCCceeEEEEcCcHHH
Confidence 888889999999999999999999999999988776543
No 91
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=1.8e-29 Score=250.43 Aligned_cols=348 Identities=19% Similarity=0.279 Sum_probs=242.5
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHhHHHHhhcC-CcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCC---CCceEEEEc
Q 013176 32 ANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKG-RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQG---EGPIVLVLA 107 (448)
Q Consensus 32 ~~l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~~~-~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~---~~~~vlil~ 107 (448)
..+|++-..++.. ...++++|....++.+.+ .++++|||||+|||.++++.+++.+....+..-. ...+++|++
T Consensus 294 selP~Wnq~aF~g--~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIA 371 (1674)
T KOG0951|consen 294 SELPKWNQPAFFG--KQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIA 371 (1674)
T ss_pred cCCcchhhhhccc--chhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEe
Confidence 5777778888754 455999999999998876 5899999999999999999999998775442221 245899999
Q ss_pred CcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHcccc---CCCCccEEEEeccc
Q 013176 108 PTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHT---NLRRVTYLVLDEAD 184 (448)
Q Consensus 108 P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~---~~~~~~~iIvDE~h 184 (448)
|.++|++.+...+.+....++++|..++|+...... -.....|+||||+.. +.+.++.. ..+-++++|+||.|
T Consensus 372 PmKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~---qieeTqVIV~TPEK~-DiITRk~gdraY~qlvrLlIIDEIH 447 (1674)
T KOG0951|consen 372 PMKALVQEMVGSFSKRLAPLGITVLELTGDSQLGKE---QIEETQVIVTTPEKW-DIITRKSGDRAYEQLVRLLIIDEIH 447 (1674)
T ss_pred eHHHHHHHHHHHHHhhccccCcEEEEecccccchhh---hhhcceeEEeccchh-hhhhcccCchhHHHHHHHHhhhhhh
Confidence 999999999999998888999999999998653222 112467999999998 44443322 23447899999999
Q ss_pred ccccCCCHHHHHHHHHHc-------CCCcceEEEeccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceEEEEecch-
Q 013176 185 RMLDMGFEPQIRKIVTQI-------RPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEA- 256 (448)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~-------~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 256 (448)
.+-+. .++.+..+..+. ...++++++|||+|+.. +....+.-++..+........+...-++++......
T Consensus 448 LLhDd-RGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~-DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~ 525 (1674)
T KOG0951|consen 448 LLHDD-RGPVLESIVARTFRRSESTEEGSRLVGLSATLPNYE-DVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKP 525 (1674)
T ss_pred hcccc-cchHHHHHHHHHHHHhhhcccCceeeeecccCCchh-hhHHHhccCcccccccCcccCcCCccceEeccccCCc
Confidence 66443 456665543332 24678999999998643 222222223322222222222333333444332211
Q ss_pred -hHHH----HHHHHHHhhhcCCcEEEEecchhHHHHHHHHHHhC------------------------------------
Q 013176 257 -EKYN----RLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMD------------------------------------ 295 (448)
Q Consensus 257 -~~~~----~l~~~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~------------------------------------ 295 (448)
.+++ .+.+-+-+.....++|||+.+++++.+.|+.++..
T Consensus 526 ~~~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdL 605 (1674)
T KOG0951|consen 526 LKRFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDL 605 (1674)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHH
Confidence 1222 22233333344578999999999988888877620
Q ss_pred -CCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCCCccEEE----EcCC------CCChhhhhhcccccC
Q 013176 296 -GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVKDIKCVV----NYDF------PTSLEDYVHRIGRTG 364 (448)
Q Consensus 296 -~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~Vi----~~~~------p~s~~~~~Q~~GR~~ 364 (448)
.+..++.|++|+..+|..+.+.|++|.++|+|+|..+++|+|+|.-.++| .|++ +.++.+.+|+.||+|
T Consensus 606 LpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgrag 685 (1674)
T KOG0951|consen 606 LPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAG 685 (1674)
T ss_pred hhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcC
Confidence 13467899999999999999999999999999999999999999766555 3333 238899999999999
Q ss_pred CCCCC--ceEEEEecCCChHHHHHH
Q 013176 365 RAGAR--GTAFTFFTHSNAKFARDL 387 (448)
Q Consensus 365 R~g~~--g~~~~~~~~~~~~~~~~l 387 (448)
|.+.+ |..++.-...+..+...+
T Consensus 686 rp~~D~~gegiiit~~se~qyyls~ 710 (1674)
T KOG0951|consen 686 RPQYDTCGEGIIITDHSELQYYLSL 710 (1674)
T ss_pred CCccCcCCceeeccCchHhhhhHHh
Confidence 97654 455555555454444443
No 92
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.97 E-value=3.2e-29 Score=260.13 Aligned_cols=303 Identities=21% Similarity=0.292 Sum_probs=208.8
Q ss_pred HhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHh-hcCCCceEEE
Q 013176 55 AQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF-GSRAGIRSTC 133 (448)
Q Consensus 55 ~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~-~~~~~~~~~~ 133 (448)
.+.+..+..++.++++|+||||||.. +|.+..-... +...++++.-|++.-+..+++.+.+. +...+-.|.+
T Consensus 73 ~~Il~~l~~~~vvii~g~TGSGKTTq--lPq~lle~~~-----~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VGY 145 (1283)
T TIGR01967 73 EDIAEAIAENQVVIIAGETGSGKTTQ--LPKICLELGR-----GSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVGY 145 (1283)
T ss_pred HHHHHHHHhCceEEEeCCCCCCcHHH--HHHHHHHcCC-----CCCceEecCCccHHHHHHHHHHHHHHhCCCcceEEee
Confidence 46777777778889999999999983 4544332211 12346888899988888877777653 3333333332
Q ss_pred EEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEeccc-ccccCCCHHH-HHHHHHHcCCCcceEEE
Q 013176 134 IYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEAD-RMLDMGFEPQ-IRKIVTQIRPDRQTLYW 211 (448)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h-~~~~~~~~~~-~~~~~~~~~~~~~~v~~ 211 (448)
-....+. ...+..|.|+|++.|+..+... ..+.++++|||||+| +.++.++.-. ++.++.. .++.++++|
T Consensus 146 ~vR~~~~------~s~~T~I~~~TdGiLLr~l~~d-~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~-rpdLKlIlm 217 (1283)
T TIGR01967 146 KVRFHDQ------VSSNTLVKLMTDGILLAETQQD-RFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPR-RPDLKIIIT 217 (1283)
T ss_pred EEcCCcc------cCCCceeeeccccHHHHHhhhC-cccccCcEEEEcCcchhhccchhHHHHHHHHHhh-CCCCeEEEE
Confidence 2211111 2345689999999999887654 357889999999999 4777665543 4444433 467899999
Q ss_pred eccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceEEEEec------chhHHHHHHHHHHhhh--cCCcEEEEecchh
Q 013176 212 SATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVT------EAEKYNRLIKLLKEVM--DGSRILIFTETKK 283 (448)
Q Consensus 212 SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~l~~~~--~~~k~lVf~~~~~ 283 (448)
|||+.. ..+...+...+. +.+.... . .+...+.... ..++...+...+.+.. ..+.+|||+++..
T Consensus 218 SATld~--~~fa~~F~~apv-I~V~Gr~--~--PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~ 290 (1283)
T TIGR01967 218 SATIDP--ERFSRHFNNAPI-IEVSGRT--Y--PVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGER 290 (1283)
T ss_pred eCCcCH--HHHHHHhcCCCE-EEECCCc--c--cceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCHH
Confidence 999964 456665544443 2222111 1 1111111111 1123344444444332 3468999999999
Q ss_pred HHHHHHHHHHhCC---CCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCCCccEEEEcCCCC---------
Q 013176 284 GCDQVTRQLRMDG---WPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVKDIKCVVNYDFPT--------- 351 (448)
Q Consensus 284 ~~~~l~~~L~~~~---~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~Vi~~~~p~--------- 351 (448)
+++.+++.|.+.+ ..+..+||+++.+++..+++.+ +..+|||||+++++|+|+|++++||+++.+.
T Consensus 291 EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~ 368 (1283)
T TIGR01967 291 EIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTK 368 (1283)
T ss_pred HHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccC
Confidence 9999999998764 3478899999999999886543 2468999999999999999999999998542
Q ss_pred ---------ChhhhhhcccccCCCCCCceEEEEecCCChH
Q 013176 352 ---------SLEDYVHRIGRTGRAGARGTAFTFFTHSNAK 382 (448)
Q Consensus 352 ---------s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~ 382 (448)
|.+++.||.||+||.+ +|.|+.+++..+..
T Consensus 369 ~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~~ 407 (1283)
T TIGR01967 369 VQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDFN 407 (1283)
T ss_pred ccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHHH
Confidence 5579999999999996 99999999876543
No 93
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=1.6e-28 Score=243.67 Aligned_cols=149 Identities=19% Similarity=0.242 Sum_probs=129.0
Q ss_pred cccCCCCHHHHHHHH-----HCCCCCC---cHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCC
Q 013176 29 FQEANFPDYCLEVIA-----KLGFVEP---TPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEG 100 (448)
Q Consensus 29 ~~~~~l~~~l~~~~~-----~~~~~~~---~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~ 100 (448)
.+.+.+.+++...+. .+||..| +|+|.++++.+..++++++.++||+|||++|++|++..+...
T Consensus 64 ~eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g-------- 135 (970)
T PRK12899 64 PEAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTG-------- 135 (970)
T ss_pred HHHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhc--------
Confidence 356788888888876 5789888 999999999999999999999999999999999999877542
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHH-HHHHHccccCCC------
Q 013176 101 PIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRL-IDMLEAQHTNLR------ 173 (448)
Q Consensus 101 ~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~~~~~~~~~~------ 173 (448)
..++|++||++||.|..+++..+...+++++.+++|+.+...+...+ .++|+|+||.+| ++++..+...++
T Consensus 136 ~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~~~~~~~~~~vq 213 (970)
T PRK12899 136 KPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDNSIATRKEEQVG 213 (970)
T ss_pred CCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCCCCCcCHHHhhc
Confidence 23889999999999999999999999999999999998887766555 589999999999 999887655444
Q ss_pred -CccEEEEecccccc
Q 013176 174 -RVTYLVLDEADRML 187 (448)
Q Consensus 174 -~~~~iIvDE~h~~~ 187 (448)
.+.++|+||||.++
T Consensus 214 r~~~~~IIDEADsmL 228 (970)
T PRK12899 214 RGFYFAIIDEVDSIL 228 (970)
T ss_pred ccccEEEEechhhhh
Confidence 56899999999865
No 94
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=1.2e-29 Score=245.85 Aligned_cols=312 Identities=20% Similarity=0.207 Sum_probs=227.3
Q ss_pred HHCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013176 43 AKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALK 122 (448)
Q Consensus 43 ~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~ 122 (448)
..++| +|-.+|++|+-++..+.+++|.|+|.+|||.++-+++...-.. ..+.+|..|-++|-.|-.+.|+.
T Consensus 292 ~~~pF-elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~h--------~TR~iYTSPIKALSNQKfRDFk~ 362 (1248)
T KOG0947|consen 292 LIYPF-ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQKH--------MTRTIYTSPIKALSNQKFRDFKE 362 (1248)
T ss_pred hhCCC-CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHhh--------ccceEecchhhhhccchHHHHHH
Confidence 34788 8999999999999999999999999999999988877654333 66799999999999999999886
Q ss_pred hhcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCCCHHHHHHHHHHc
Q 013176 123 FGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQI 202 (448)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~ 202 (448)
-....+ .++|+.... ..+.++|.|.+.|-+.+.++.-.++++..|||||+|.+.+...+..|.+++-.+
T Consensus 363 tF~Dvg----LlTGDvqin-------PeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMl 431 (1248)
T KOG0947|consen 363 TFGDVG----LLTGDVQIN-------PEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIML 431 (1248)
T ss_pred hccccc----eeecceeeC-------CCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeec
Confidence 444333 566665332 346799999999999998888888999999999999999988889999999999
Q ss_pred CCCcceEEEeccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceEEEEe-----------------------------
Q 013176 203 RPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVV----------------------------- 253 (448)
Q Consensus 203 ~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------- 253 (448)
+++.++|++|||.|+.. +++....+.....+........+..+.+++...
T Consensus 432 P~HV~~IlLSATVPN~~-EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~a 510 (1248)
T KOG0947|consen 432 PRHVNFILLSATVPNTL-EFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEA 510 (1248)
T ss_pred cccceEEEEeccCCChH-HHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhcccc
Confidence 99999999999998654 344433221100000000000000000000000
Q ss_pred ------------------------------------cch---hHHHHHHHHHHhhhcCCcEEEEecchhHHHHHHHHHHh
Q 013176 254 ------------------------------------TEA---EKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRM 294 (448)
Q Consensus 254 ------------------------------------~~~---~~~~~l~~~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~ 294 (448)
... +.+-.++..++. .+--+++|||.+++.|++.++.|..
T Consensus 511 k~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k-~~lLP~VvFvFSkkrCde~a~~L~~ 589 (1248)
T KOG0947|consen 511 KFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRK-KNLLPVVVFVFSKKRCDEYADYLTN 589 (1248)
T ss_pred cccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhh-cccCceEEEEEccccHHHHHHHHhc
Confidence 000 012223333322 1233899999999999999999854
Q ss_pred CCC---------------------------------------CeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCC
Q 013176 295 DGW---------------------------------------PALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARG 335 (448)
Q Consensus 295 ~~~---------------------------------------~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~G 335 (448)
.+. .++++|+++-+--++-+.-.|..|-++||+||..+++|
T Consensus 590 ~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMG 669 (1248)
T KOG0947|consen 590 LNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMG 669 (1248)
T ss_pred cCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhh
Confidence 321 14588999999999999999999999999999999999
Q ss_pred CCCCCccEEEEcCCC---------CChhhhhhcccccCCCCCC--ceEEEEec
Q 013176 336 LDVKDIKCVVNYDFP---------TSLEDYVHRIGRTGRAGAR--GTAFTFFT 377 (448)
Q Consensus 336 idi~~~~~Vi~~~~p---------~s~~~~~Q~~GR~~R~g~~--g~~~~~~~ 377 (448)
||.| .++||+-..- -.+.+|.|++|||||.|-+ |.++++..
T Consensus 670 VNMP-ARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~ 721 (1248)
T KOG0947|consen 670 VNMP-ARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCK 721 (1248)
T ss_pred cCCC-ceeEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEec
Confidence 9998 5566544432 2678999999999999864 55555543
No 95
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.97 E-value=2.4e-28 Score=254.91 Aligned_cols=308 Identities=17% Similarity=0.213 Sum_probs=194.4
Q ss_pred CCcHHHHhHHHHhhc-----CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013176 49 EPTPIQAQGWPMALK-----GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (448)
Q Consensus 49 ~~~~~Q~~~i~~~~~-----~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~ 123 (448)
.+|+||.+|+..+.+ .++.+++++||||||.+++..+ ..+.+.. ...++|||+|+.+|+.|+.+.+..+
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li-~~L~~~~-----~~~rVLfLvDR~~L~~Qa~~~F~~~ 486 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALM-YRLLKAK-----RFRRILFLVDRSALGEQAEDAFKDT 486 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHH-HHHHhcC-----ccCeEEEEecHHHHHHHHHHHHHhc
Confidence 589999999987763 3578999999999998855433 3443321 2468999999999999999999986
Q ss_pred hcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHcc-----ccCCCCccEEEEecccccccC---------
Q 013176 124 GSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQ-----HTNLRRVTYLVLDEADRMLDM--------- 189 (448)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~-----~~~~~~~~~iIvDE~h~~~~~--------- 189 (448)
..........+++.... ..........|+|+|++++...+... ...+..+++||+||||+-...
T Consensus 487 ~~~~~~~~~~i~~i~~L--~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~ 564 (1123)
T PRK11448 487 KIEGDQTFASIYDIKGL--EDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGEL 564 (1123)
T ss_pred ccccccchhhhhchhhh--hhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchh
Confidence 43222111111110000 00011234789999999997765322 134677899999999985310
Q ss_pred ------CCHHHHHHHHHHcCCCcceEEEeccCchHHHHHHHH--------------HcC---CCeEEEeCCcc----ccc
Q 013176 190 ------GFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQ--------------FLR---NPYKVIIGSLE----LKA 242 (448)
Q Consensus 190 ------~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~--------------~~~---~~~~~~~~~~~----~~~ 242 (448)
.+...++.++..+ +...++|||||......+... ++- .|..+...... ...
T Consensus 565 ~~~~~~~~~~~yr~iL~yF--dA~~IGLTATP~r~t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~ 642 (1123)
T PRK11448 565 QFRDQLDYVSKYRRVLDYF--DAVKIGLTATPALHTTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFEK 642 (1123)
T ss_pred ccchhhhHHHHHHHHHhhc--CccEEEEecCCccchhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEeccccccccc
Confidence 0135677777655 356799999986543221110 010 01111100000 000
Q ss_pred ccCc---c----eEE-EEecc---------------hhHHHHHHHHHHhhh---cCCcEEEEecchhHHHHHHHHHHhC-
Q 013176 243 NQSI---N----QVV-EVVTE---------------AEKYNRLIKLLKEVM---DGSRILIFTETKKGCDQVTRQLRMD- 295 (448)
Q Consensus 243 ~~~~---~----~~~-~~~~~---------------~~~~~~l~~~l~~~~---~~~k~lVf~~~~~~~~~l~~~L~~~- 295 (448)
.... . ... ....+ ......+...+.+.. ..+|+||||.++++|..+++.|.+.
T Consensus 643 ~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f 722 (1123)
T PRK11448 643 GEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAF 722 (1123)
T ss_pred cchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHH
Confidence 0000 0 000 00000 000111111111111 2369999999999999999887653
Q ss_pred -----CC---CeEEEcCCCCHHHHHHHHHHHhcCCC-CEEEEeccccCCCCCCCccEEEEcCCCCChhhhhhcccccCCC
Q 013176 296 -----GW---PALSIHGDKNQSERDWVLAEFRSGRS-PIMTATDVAARGLDVKDIKCVVNYDFPTSLEDYVHRIGRTGRA 366 (448)
Q Consensus 296 -----~~---~~~~~~~~~~~~~r~~~~~~f~~g~~-~vLv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~ 366 (448)
+. .+..++++.+ ++..++++|+++.. +|+|+++++.+|+|+|.+.+||+++++.|...|.|++||+.|.
T Consensus 723 ~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~ 800 (1123)
T PRK11448 723 KKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATRL 800 (1123)
T ss_pred HhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhccC
Confidence 12 3556888876 56789999999876 5899999999999999999999999999999999999999997
Q ss_pred CC
Q 013176 367 GA 368 (448)
Q Consensus 367 g~ 368 (448)
..
T Consensus 801 ~~ 802 (1123)
T PRK11448 801 CP 802 (1123)
T ss_pred Cc
Confidence 44
No 96
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=3.2e-28 Score=240.79 Aligned_cols=321 Identities=21% Similarity=0.254 Sum_probs=231.6
Q ss_pred HCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013176 44 KLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (448)
Q Consensus 44 ~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~ 123 (448)
.+|+ .|++.|.-..-.+.+| -+..+.||+|||+++.++++..+.. +..+.+++|+..||.|-++++..+
T Consensus 76 ~~g~-~~~dvQlig~l~l~~G--~iaEm~TGEGKTLvA~l~a~l~al~--------G~~v~vvT~neyLA~Rd~e~~~~~ 144 (796)
T PRK12906 76 VLGL-RPFDVQIIGGIVLHEG--NIAEMKTGEGKTLTATLPVYLNALT--------GKGVHVVTVNEYLSSRDATEMGEL 144 (796)
T ss_pred HhCC-CCchhHHHHHHHHhcC--CcccccCCCCCcHHHHHHHHHHHHc--------CCCeEEEeccHHHHHhhHHHHHHH
Confidence 3677 8899997776666555 4889999999999999999888776 677999999999999999999999
Q ss_pred hcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHH-HHHHccc------cCCCCccEEEEecccccccC-------
Q 013176 124 GSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLI-DMLEAQH------TNLRRVTYLVLDEADRMLDM------- 189 (448)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~-~~~~~~~------~~~~~~~~iIvDE~h~~~~~------- 189 (448)
...+++++.++.++.+..+.... -.++|+++|...|- +++.... ...+.+.+.||||+|.++-.
T Consensus 145 ~~~LGl~vg~i~~~~~~~~r~~~--y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLi 222 (796)
T PRK12906 145 YRWLGLTVGLNLNSMSPDEKRAA--YNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLI 222 (796)
T ss_pred HHhcCCeEEEeCCCCCHHHHHHH--hcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCcee
Confidence 99999999999887655443333 36799999988763 3333221 12456789999999975410
Q ss_pred ------C---CHHHHHHHHHHcCC--------------------------------------------------------
Q 013176 190 ------G---FEPQIRKIVTQIRP-------------------------------------------------------- 204 (448)
Q Consensus 190 ------~---~~~~~~~~~~~~~~-------------------------------------------------------- 204 (448)
. ....+..+...+..
T Consensus 223 isg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~ 302 (796)
T PRK12906 223 ISGQAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHID 302 (796)
T ss_pred cCCCCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHH
Confidence 0 00011111111000
Q ss_pred ------------------------------------------------------------------------CcceEEEe
Q 013176 205 ------------------------------------------------------------------------DRQTLYWS 212 (448)
Q Consensus 205 ------------------------------------------------------------------------~~~~v~~S 212 (448)
..++.+||
T Consensus 303 ~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmT 382 (796)
T PRK12906 303 QALRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMT 382 (796)
T ss_pred HHHHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccC
Confidence 00444555
Q ss_pred ccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceEEEEecchhHHHHHHHHHHhh-hcCCcEEEEecchhHHHHHHHH
Q 013176 213 ATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKEV-MDGSRILIFTETKKGCDQVTRQ 291 (448)
Q Consensus 213 AT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~k~lVf~~~~~~~~~l~~~ 291 (448)
+|.......+.. .++-++.. ++...+...... ....+.+...|+..+.+.+.+. ..+.++||||+++..++.+++.
T Consensus 383 GTa~~e~~Ef~~-iY~l~vv~-IPtnkp~~r~d~-~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~ 459 (796)
T PRK12906 383 GTAKTEEEEFRE-IYNMEVIT-IPTNRPVIRKDS-PDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHL 459 (796)
T ss_pred CCCHHHHHHHHH-HhCCCEEE-cCCCCCeeeeeC-CCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHH
Confidence 555433333322 22222222 222111111111 1223335567888888877643 4578999999999999999999
Q ss_pred HHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCC---Ccc-----EEEEcCCCCChhhhhhccccc
Q 013176 292 LRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVK---DIK-----CVVNYDFPTSLEDYVHRIGRT 363 (448)
Q Consensus 292 L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~---~~~-----~Vi~~~~p~s~~~~~Q~~GR~ 363 (448)
|.+.++++.++|+.+...++..+.+.++.|. |+|||+++++|+||+ ++. +||.++.|.|...+.|++||+
T Consensus 460 L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRt 537 (796)
T PRK12906 460 LDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRS 537 (796)
T ss_pred HHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhh
Confidence 9999999999999999888877777777666 999999999999995 788 999999999999999999999
Q ss_pred CCCCCCceEEEEecCCChH
Q 013176 364 GRAGARGTAFTFFTHSNAK 382 (448)
Q Consensus 364 ~R~g~~g~~~~~~~~~~~~ 382 (448)
||.|.+|.+..+++..|.-
T Consensus 538 GRqG~~G~s~~~~sleD~l 556 (796)
T PRK12906 538 GRQGDPGSSRFYLSLEDDL 556 (796)
T ss_pred ccCCCCcceEEEEeccchH
Confidence 9999999999999877554
No 97
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=2.6e-29 Score=237.86 Aligned_cols=311 Identities=21% Similarity=0.284 Sum_probs=231.1
Q ss_pred HCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013176 44 KLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (448)
Q Consensus 44 ~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~ 123 (448)
.++| .+-|+|..++..+-.++++++.|.|.+|||.++.+++...+.. +.+|||..|-++|-.|-++++..-
T Consensus 125 ~YPF-~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~--------kQRVIYTSPIKALSNQKYREl~~E 195 (1041)
T KOG0948|consen 125 TYPF-TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE--------KQRVIYTSPIKALSNQKYRELLEE 195 (1041)
T ss_pred CCCc-ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHh--------cCeEEeeChhhhhcchhHHHHHHH
Confidence 4567 8999999999999999999999999999999999999888776 678999999999999999998764
Q ss_pred hcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCCCHHHHHHHHHHcC
Q 013176 124 GSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIR 203 (448)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~ 203 (448)
....| ..+|+..... .+..+|.|.+.|-..+.++...++.+..|||||+|.|-+...+-.|.+.+-.++
T Consensus 196 F~DVG----LMTGDVTInP-------~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP 264 (1041)
T KOG0948|consen 196 FKDVG----LMTGDVTINP-------DASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLP 264 (1041)
T ss_pred hcccc----eeecceeeCC-------CCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEecc
Confidence 33333 3445443322 356899999999888888877888899999999999999888888888888889
Q ss_pred CCcceEEEeccCchHHHHHHHHH---cCCCeEEEeCCcccccccCcceE---------EEEecch-----hHHH------
Q 013176 204 PDRQTLYWSATWPREVETLARQF---LRNPYKVIIGSLELKANQSINQV---------VEVVTEA-----EKYN------ 260 (448)
Q Consensus 204 ~~~~~v~~SAT~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~-----~~~~------ 260 (448)
.+.+.+++|||+|+.. +++... -..|..+......+.+ ++++ +.+.++. +.+.
T Consensus 265 ~~vr~VFLSATiPNA~-qFAeWI~~ihkQPcHVVYTdyRPTP---LQHyifP~ggdGlylvVDek~~FrednF~~am~~l 340 (1041)
T KOG0948|consen 265 DNVRFVFLSATIPNAR-QFAEWICHIHKQPCHVVYTDYRPTP---LQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVL 340 (1041)
T ss_pred ccceEEEEeccCCCHH-HHHHHHHHHhcCCceEEeecCCCCc---ceeeeecCCCCeeEEEEecccccchHHHHHHHHHh
Confidence 9999999999998764 344332 2233333332221111 1111 1111111 1111
Q ss_pred -----------------------------HHHHHHHhhh--cCCcEEEEecchhHHHHHHHHHHhCCCC-----------
Q 013176 261 -----------------------------RLIKLLKEVM--DGSRILIFTETKKGCDQVTRQLRMDGWP----------- 298 (448)
Q Consensus 261 -----------------------------~l~~~l~~~~--~~~k~lVf~~~~~~~~~l~~~L~~~~~~----------- 298 (448)
.+..+++... ...++|||+.++++|+.+|-.+.+..++
T Consensus 341 ~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~i 420 (1041)
T KOG0948|consen 341 RKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETI 420 (1041)
T ss_pred hccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHH
Confidence 1222222222 2348999999999999999888765433
Q ss_pred ----------------------------eEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCCCccEEEEcCCC
Q 013176 299 ----------------------------ALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVKDIKCVVNYDFP 350 (448)
Q Consensus 299 ----------------------------~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~Vi~~~~p 350 (448)
+.+.|+++-+--++.+.-.|++|-+++|+||..++.|+|.|. +.|++...-
T Consensus 421 F~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPA-kTVvFT~~r 499 (1041)
T KOG0948|consen 421 FNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPA-KTVVFTAVR 499 (1041)
T ss_pred HHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcc-eeEEEeecc
Confidence 347899999988999999999999999999999999999985 555544432
Q ss_pred --------C-ChhhhhhcccccCCCCCC--ceEEEEecCC
Q 013176 351 --------T-SLEDYVHRIGRTGRAGAR--GTAFTFFTHS 379 (448)
Q Consensus 351 --------~-s~~~~~Q~~GR~~R~g~~--g~~~~~~~~~ 379 (448)
| |..+|+|+.|||||.|-+ |.+++.++..
T Consensus 500 KfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 500 KFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred ccCCcceeeecccceEEecccccccCCCCCceEEEEecCc
Confidence 1 667899999999999965 6667777654
No 98
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.96 E-value=2.9e-28 Score=244.93 Aligned_cols=314 Identities=21% Similarity=0.290 Sum_probs=227.6
Q ss_pred HHHHHHCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHH
Q 013176 39 LEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQE 118 (448)
Q Consensus 39 ~~~~~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~ 118 (448)
......+|| +|.++|++++..+..+.++++++|||+|||+++.+++...+.. +.+++|..|.++|..|.++
T Consensus 110 ~~~~~~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~--------~qrviYTsPIKALsNQKyr 180 (1041)
T COG4581 110 APPAREYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRD--------GQRVIYTSPIKALSNQKYR 180 (1041)
T ss_pred CcHHHhCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHc--------CCceEeccchhhhhhhHHH
Confidence 445567899 8999999999999999999999999999999999888777666 5569999999999999999
Q ss_pred HHHH-hhcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCCCHHHHHH
Q 013176 119 EALK-FGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRK 197 (448)
Q Consensus 119 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~ 197 (448)
.+.. |++. .-.+..++|+.... ..+.++|.|.|.|-+.+......+..+..|||||+|.+.+...+..|..
T Consensus 181 dl~~~fgdv-~~~vGL~TGDv~IN-------~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE 252 (1041)
T COG4581 181 DLLAKFGDV-ADMVGLMTGDVSIN-------PDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEE 252 (1041)
T ss_pred HHHHHhhhh-hhhccceecceeeC-------CCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHH
Confidence 9865 4332 11233445544332 3478999999999999888878889999999999999999988999999
Q ss_pred HHHHcCCCcceEEEeccCchHHHHHHHHHc---CCCeEEEeCCcccccccCcceEEE-------Eecchh----------
Q 013176 198 IVTQIRPDRQTLYWSATWPREVETLARQFL---RNPYKVIIGSLELKANQSINQVVE-------VVTEAE---------- 257 (448)
Q Consensus 198 ~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~---------- 257 (448)
++-.++...++++||||.++..+ +...+. ..+..+..... .+..+.+++. ..+...
T Consensus 253 ~Ii~lP~~v~~v~LSATv~N~~E-F~~Wi~~~~~~~~~vv~t~~---RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a 328 (1041)
T COG4581 253 VIILLPDHVRFVFLSATVPNAEE-FAEWIQRVHSQPIHVVSTEH---RPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSA 328 (1041)
T ss_pred HHHhcCCCCcEEEEeCCCCCHHH-HHHHHHhccCCCeEEEeecC---CCCCeEEEEecCCceeeeecccccchhhcchhh
Confidence 99999999999999999986543 333221 22222222111 1111111110 000000
Q ss_pred -------------------------------------HHHHHHHHHHhhhcCCcEEEEecchhHHHHHHHHHHhC-----
Q 013176 258 -------------------------------------KYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMD----- 295 (448)
Q Consensus 258 -------------------------------------~~~~l~~~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~----- 295 (448)
....++..+.. .+.-++|+|+-++..|+..+..+...
T Consensus 329 ~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~-~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~ 407 (1041)
T COG4581 329 NRSLSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDK-DNLLPAIVFSFSRRGCEEAAQILSTLDLVLT 407 (1041)
T ss_pred hhhhhccchhccccCccccccccccccccCCcccccccchHHHhhhhh-hcCCceEEEEEchhhHHHHHHHhcccccccC
Confidence 00111222211 12347999999999999888777421
Q ss_pred -----------------------CCC-------------eEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCC
Q 013176 296 -----------------------GWP-------------ALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVK 339 (448)
Q Consensus 296 -----------------------~~~-------------~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~ 339 (448)
+++ +.+.|+++-+..|..+.+.|..|-++|+++|.+++.|+|.|
T Consensus 408 ~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmP 487 (1041)
T COG4581 408 EEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMP 487 (1041)
T ss_pred CcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCc
Confidence 111 34779999999999999999999999999999999999998
Q ss_pred CccEEEEcCC---------CCChhhhhhcccccCCCCCC--ceEEEE
Q 013176 340 DIKCVVNYDF---------PTSLEDYVHRIGRTGRAGAR--GTAFTF 375 (448)
Q Consensus 340 ~~~~Vi~~~~---------p~s~~~~~Q~~GR~~R~g~~--g~~~~~ 375 (448)
. +.|++..+ .-++.+|+|+.|||||.|-+ |.+++.
T Consensus 488 a-rtvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~ 533 (1041)
T COG4581 488 A-RTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVI 533 (1041)
T ss_pred c-cceeeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEe
Confidence 5 55544432 23778999999999999975 555555
No 99
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.96 E-value=4.3e-27 Score=241.01 Aligned_cols=315 Identities=19% Similarity=0.242 Sum_probs=212.6
Q ss_pred CCcHHHHhHHHHhh----cCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhh
Q 013176 49 EPTPIQAQGWPMAL----KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (448)
Q Consensus 49 ~~~~~Q~~~i~~~~----~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~ 124 (448)
.+++||.+.+..+. .+.+.|+...+|.|||+.++. ++..+.... +....+||||| .++..||.+++.+|+
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIa-lL~~L~~~~----~~~gp~LIVvP-~SlL~nW~~Ei~kw~ 242 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTIS-LLGYLHEYR----GITGPHMVVAP-KSTLGNWMNEIRRFC 242 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHH-HHHHHHHhc----CCCCCEEEEeC-hHHHHHHHHHHHHHC
Confidence 68999999998875 456889999999999987543 333333211 12446899999 577899999999987
Q ss_pred cCCCceEEEEEcCCCchHhHHH---HhcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCCCHHHHHHHHHH
Q 013176 125 SRAGIRSTCIYGGAPKGPQIRD---LRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQ 201 (448)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~ 201 (448)
. .+++..++|.......... ....++|+|+|++.+..... .+.-..+++||+||+|++-+.. ......+..
T Consensus 243 p--~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~--~L~k~~W~~VIvDEAHrIKN~~--Sklskalr~ 316 (1033)
T PLN03142 243 P--VLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKT--ALKRFSWRYIIIDEAHRIKNEN--SLLSKTMRL 316 (1033)
T ss_pred C--CCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHH--HhccCCCCEEEEcCccccCCHH--HHHHHHHHH
Confidence 4 4566777775443222211 12457999999999865432 2223357899999999987643 334444455
Q ss_pred cCCCcceEEEeccCchH----HHHHHHHH-------------------------------------------------cC
Q 013176 202 IRPDRQTLYWSATWPRE----VETLARQF-------------------------------------------------LR 228 (448)
Q Consensus 202 ~~~~~~~v~~SAT~~~~----~~~~~~~~-------------------------------------------------~~ 228 (448)
+. ....+++|+||..+ +..++..+ ++
T Consensus 317 L~-a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~LP 395 (1033)
T PLN03142 317 FS-TNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLP 395 (1033)
T ss_pred hh-cCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhCC
Confidence 53 44568899997421 11110000 00
Q ss_pred CCeEEEe--CCccccc----------------ccC---c----ce---------EE-------------EEecchhHHHH
Q 013176 229 NPYKVII--GSLELKA----------------NQS---I----NQ---------VV-------------EVVTEAEKYNR 261 (448)
Q Consensus 229 ~~~~~~~--~~~~~~~----------------~~~---~----~~---------~~-------------~~~~~~~~~~~ 261 (448)
......+ ....... ... + .+ .+ .......|+..
T Consensus 396 pK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~l 475 (1033)
T PLN03142 396 PKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVL 475 (1033)
T ss_pred CceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHHH
Confidence 0000000 0000000 000 0 00 00 00011234445
Q ss_pred HHHHHHhhh-cCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcC---CCCEEEEeccccCCCC
Q 013176 262 LIKLLKEVM-DGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSG---RSPIMTATDVAARGLD 337 (448)
Q Consensus 262 l~~~l~~~~-~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g---~~~vLv~T~~~~~Gid 337 (448)
|..++.... .+.++|||+........+.+.|...++....++|+++..+|..+++.|+.. ...+|++|.+.+.|||
T Consensus 476 LdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGIN 555 (1033)
T PLN03142 476 LDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGIN 555 (1033)
T ss_pred HHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCc
Confidence 555555443 367999999999999999999999999999999999999999999999753 2347889999999999
Q ss_pred CCCccEEEEcCCCCChhhhhhcccccCCCCCCceEEEEe
Q 013176 338 VKDIKCVVNYDFPTSLEDYVHRIGRTGRAGARGTAFTFF 376 (448)
Q Consensus 338 i~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~ 376 (448)
+..+++||+||++|++....|++||+.|.|+...+.++.
T Consensus 556 Lt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyR 594 (1033)
T PLN03142 556 LATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFR 594 (1033)
T ss_pred hhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEE
Confidence 999999999999999999999999999999988775543
No 100
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.96 E-value=2.4e-27 Score=241.24 Aligned_cols=324 Identities=17% Similarity=0.222 Sum_probs=218.2
Q ss_pred CCcHHHHhHHHHhhcC---C-cEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhh
Q 013176 49 EPTPIQAQGWPMALKG---R-DLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (448)
Q Consensus 49 ~~~~~Q~~~i~~~~~~---~-~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~ 124 (448)
..++.|.+++..+... . .+++.+|||+|||++.+.+++..+... .....+++++.|++++++++.+.++++.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~----~~~~~r~i~vlP~~t~ie~~~~r~~~~~ 270 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK----IKLKSRVIYVLPFRTIIEDMYRRAKEIF 270 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc----ccccceEEEEccHHHHHHHHHHHHHhhh
Confidence 4589999999888764 3 678889999999999998888876663 1137789999999999999999999876
Q ss_pred cCCCceEEEEEcCCCchHhHHH-------------H-hcCCcEEEEccHHHHHHHH-ccccC-C--CCccEEEEeccccc
Q 013176 125 SRAGIRSTCIYGGAPKGPQIRD-------------L-RRGVEIVIATPGRLIDMLE-AQHTN-L--RRVTYLVLDEADRM 186 (448)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~-------------~-~~~~~iiv~T~~~l~~~~~-~~~~~-~--~~~~~iIvDE~h~~ 186 (448)
..........++.......... . ..-..++++|+.+...... ..... + -..+.+|+||+|.+
T Consensus 271 ~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~ 350 (733)
T COG1203 271 GLFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLY 350 (733)
T ss_pred cccccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhh
Confidence 5544332212332221111000 0 0124456666655544211 11111 1 12478999999998
Q ss_pred ccCCCHHHHHHHHHHc-CCCcceEEEeccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceEEEE-ecchhH--HHHH
Q 013176 187 LDMGFEPQIRKIVTQI-RPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEV-VTEAEK--YNRL 262 (448)
Q Consensus 187 ~~~~~~~~~~~~~~~~-~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~l 262 (448)
.+......+..++..+ ..+..+++||||+|+.....+............................. ...... ....
T Consensus 351 ~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 430 (733)
T COG1203 351 ADETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELI 430 (733)
T ss_pred cccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhhh
Confidence 8873233333333333 35788999999999999888888777655554432211001011110000 000111 1222
Q ss_pred HHHHHhhhcCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHh----cCCCCEEEEeccccCCCCC
Q 013176 263 IKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFR----SGRSPIMTATDVAARGLDV 338 (448)
Q Consensus 263 ~~~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~----~g~~~vLv~T~~~~~Gidi 338 (448)
.....+...+++++|.|||+..|.++++.|+..+.++.++|+.+...+|.+.++.++ .+...|+|||++++.|+|+
T Consensus 431 ~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDi 510 (733)
T COG1203 431 ELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDI 510 (733)
T ss_pred hcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEecc
Confidence 333344456889999999999999999999998778999999999999998888654 4678899999999999999
Q ss_pred CCccEEEEcCCCCChhhhhhcccccCCCC--CCceEEEEecCC
Q 013176 339 KDIKCVVNYDFPTSLEDYVHRIGRTGRAG--ARGTAFTFFTHS 379 (448)
Q Consensus 339 ~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g--~~g~~~~~~~~~ 379 (448)
+.+.+|.--.| +.+++||+||++|.| ..+..+++....
T Consensus 511 -dfd~mITe~aP--idSLIQR~GRv~R~g~~~~~~~~v~~~~~ 550 (733)
T COG1203 511 -DFDVLITELAP--IDSLIQRAGRVNRHGKKENGKIYVYNDEE 550 (733)
T ss_pred -ccCeeeecCCC--HHHHHHHHHHHhhcccccCCceeEeeccc
Confidence 57888755545 489999999999999 567777666544
No 101
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=2.4e-26 Score=227.95 Aligned_cols=322 Identities=19% Similarity=0.232 Sum_probs=228.3
Q ss_pred HCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013176 44 KLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (448)
Q Consensus 44 ~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~ 123 (448)
.+|+ .|+++|.-.--.+ ++.-+..++||.|||+++.+|++..+.. +..|.|++|+..||.|..+++..+
T Consensus 78 ~lgm-~~ydVQliGgl~L--~~G~IaEm~TGEGKTL~a~lp~~l~al~--------g~~VhIvT~ndyLA~RD~e~m~~l 146 (908)
T PRK13107 78 VFEM-RHFDVQLLGGMVL--DSNRIAEMRTGEGKTLTATLPAYLNALT--------GKGVHVITVNDYLARRDAENNRPL 146 (908)
T ss_pred HhCC-CcCchHHhcchHh--cCCccccccCCCCchHHHHHHHHHHHhc--------CCCEEEEeCCHHHHHHHHHHHHHH
Confidence 3577 6788886443333 4557899999999999999999877655 445999999999999999999999
Q ss_pred hcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHH-HHHHHcc-ccC-----CCCccEEEEecccccccCC------
Q 013176 124 GSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRL-IDMLEAQ-HTN-----LRRVTYLVLDEADRMLDMG------ 190 (448)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~~~~~-~~~-----~~~~~~iIvDE~h~~~~~~------ 190 (448)
...+++++.++.++.+.... .-.-.++|+++||..| ++++..+ ... .+.+.++||||+|.++-..
T Consensus 147 ~~~lGlsv~~i~~~~~~~~r--~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLI 224 (908)
T PRK13107 147 FEFLGLTVGINVAGLGQQEK--KAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLI 224 (908)
T ss_pred HHhcCCeEEEecCCCCHHHH--HhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCcee
Confidence 99999999999887765322 2223689999999999 7887765 222 2678899999999765211
Q ss_pred ----------CHHHHHHHHHHcC-------------------CCc-----------------------------------
Q 013176 191 ----------FEPQIRKIVTQIR-------------------PDR----------------------------------- 206 (448)
Q Consensus 191 ----------~~~~~~~~~~~~~-------------------~~~----------------------------------- 206 (448)
....+..+...+. ...
T Consensus 225 ISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~ 304 (908)
T PRK13107 225 ISGAAEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANI 304 (908)
T ss_pred ecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhh
Confidence 0001111111110 001
Q ss_pred --------------------------------------------------------------------------------
Q 013176 207 -------------------------------------------------------------------------------- 206 (448)
Q Consensus 207 -------------------------------------------------------------------------------- 206 (448)
T Consensus 305 ~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y 384 (908)
T PRK13107 305 SLLHHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQY 384 (908)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhh
Confidence
Q ss_pred -ceEEEeccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceEEEEecchhHHHHHHHHHHhh-hcCCcEEEEecchhH
Q 013176 207 -QTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKEV-MDGSRILIFTETKKG 284 (448)
Q Consensus 207 -~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~k~lVf~~~~~~ 284 (448)
++.+||+|.......+...+ +-++. .++...+..+..... ..+.....|+..+.+.+.+. ..+.++||||++++.
T Consensus 385 ~kL~GMTGTa~te~~Ef~~iY-~l~Vv-~IPTnkp~~R~d~~d-~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~ 461 (908)
T PRK13107 385 EKLAGMTGTADTEAFEFQHIY-GLDTV-VVPTNRPMVRKDMAD-LVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQ 461 (908)
T ss_pred hHhhcccCCChHHHHHHHHHh-CCCEE-ECCCCCCccceeCCC-cEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHH
Confidence 22233333332222222111 11111 111111111111111 22344567777777766554 458899999999999
Q ss_pred HHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCCC------------------------
Q 013176 285 CDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVKD------------------------ 340 (448)
Q Consensus 285 ~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~------------------------ 340 (448)
++.+++.|++.++++.++|+.++..++..+.+.|+.|. |+|||+++++|+||.=
T Consensus 462 se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~ 539 (908)
T PRK13107 462 SELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKA 539 (908)
T ss_pred HHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHH
Confidence 99999999999999999999999999999999999988 9999999999999861
Q ss_pred -------------ccEEEEcCCCCChhhhhhcccccCCCCCCceEEEEecCCChHH
Q 013176 341 -------------IKCVVNYDFPTSLEDYVHRIGRTGRAGARGTAFTFFTHSNAKF 383 (448)
Q Consensus 341 -------------~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 383 (448)
==+||-...+.|..--.|..||+||.|.+|.+..|++-.|.-+
T Consensus 540 ~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~L~ 595 (908)
T PRK13107 540 DWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDSLM 595 (908)
T ss_pred HHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcHHH
Confidence 1268888889999999999999999999999999998776643
No 102
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.95 E-value=1.8e-26 Score=195.47 Aligned_cols=165 Identities=33% Similarity=0.543 Sum_probs=140.2
Q ss_pred cHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCCce
Q 013176 51 TPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIR 130 (448)
Q Consensus 51 ~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~ 130 (448)
+|+|.++++.+.+++++++.+|||+|||++++++++..+.+. . ..++++++|+++|+.|+.+.+.++....+++
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~-~-----~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~ 74 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG-K-----DARVLIIVPTRALAEQQFERLRKFFSNTNVR 74 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT-S-----SSEEEEEESSHHHHHHHHHHHHHHTTTTTSS
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC-C-----CceEEEEeecccccccccccccccccccccc
Confidence 689999999999999999999999999999999999887763 1 3489999999999999999999998877789
Q ss_pred EEEEEcCCCch-HhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCCCHHHHHHHHHHcC--CCcc
Q 013176 131 STCIYGGAPKG-PQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIR--PDRQ 207 (448)
Q Consensus 131 ~~~~~~~~~~~-~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~--~~~~ 207 (448)
+..++++.... .....+..+++|+|+||++|.+.+.....++.++++|||||+|.+..+.+...+..+...+. ++.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~ 154 (169)
T PF00270_consen 75 VVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQ 154 (169)
T ss_dssp EEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSE
T ss_pred cccccccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCc
Confidence 99998888755 33344456799999999999999988666777799999999999998877888888877763 3588
Q ss_pred eEEEeccCchHHHH
Q 013176 208 TLYWSATWPREVET 221 (448)
Q Consensus 208 ~v~~SAT~~~~~~~ 221 (448)
++++|||++..+++
T Consensus 155 ~i~~SAT~~~~~~~ 168 (169)
T PF00270_consen 155 IILLSATLPSNVEK 168 (169)
T ss_dssp EEEEESSSTHHHHH
T ss_pred EEEEeeCCChhHhh
Confidence 99999999865543
No 103
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.95 E-value=3.8e-26 Score=223.08 Aligned_cols=340 Identities=22% Similarity=0.295 Sum_probs=239.2
Q ss_pred CCHHHH-HHHHHCCCCCCcHHHHhHH--HHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcH
Q 013176 34 FPDYCL-EVIAKLGFVEPTPIQAQGW--PMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTR 110 (448)
Q Consensus 34 l~~~l~-~~~~~~~~~~~~~~Q~~~i--~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~ 110 (448)
+++.+. ...+..|...++.||.+++ +.+.++++.+..+||+.|||+++.+.++..+... ...++++.|..
T Consensus 207 ~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~-------rr~~llilp~v 279 (1008)
T KOG0950|consen 207 LPTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR-------RRNVLLILPYV 279 (1008)
T ss_pred CchHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHH-------hhceeEeccee
Confidence 334443 3445578888999999998 6788889999999999999999999888887664 45689999999
Q ss_pred HHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHcc--ccCCCCccEEEEeccccccc
Q 013176 111 ELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQ--HTNLRRVTYLVLDEADRMLD 188 (448)
Q Consensus 111 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~--~~~~~~~~~iIvDE~h~~~~ 188 (448)
+.+..-...+..+....|+.+.+..|..+..... +.-.+.|||.|+-..+.... ...+..+++|||||.|.+.+
T Consensus 280 siv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~~----k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d 355 (1008)
T KOG0950|consen 280 SIVQEKISALSPFSIDLGFPVEEYAGRFPPEKRR----KRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGD 355 (1008)
T ss_pred ehhHHHHhhhhhhccccCCcchhhcccCCCCCcc----cceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeec
Confidence 9998888899999999999998888665553332 23579999999875554432 12455688999999999999
Q ss_pred CCCHHHHHHHHHHc-----CCCcceEEEeccCchHHHHHHHHHcCCCeEEE-eCCccc----ccccCcceE---------
Q 013176 189 MGFEPQIRKIVTQI-----RPDRQTLYWSATWPREVETLARQFLRNPYKVI-IGSLEL----KANQSINQV--------- 249 (448)
Q Consensus 189 ~~~~~~~~~~~~~~-----~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~--------- 249 (448)
.+.+..+..++..+ ....|+|+||||+++. ..+..++....... ....+. .....+...
T Consensus 356 ~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~--~lL~~~L~A~~y~t~fRPv~L~E~ik~G~~i~~~~r~~~lr~i 433 (1008)
T KOG0950|consen 356 KGRGAILELLLAKILYENLETSVQIIGMSATIPNN--SLLQDWLDAFVYTTRFRPVPLKEYIKPGSLIYESSRNKVLREI 433 (1008)
T ss_pred cccchHHHHHHHHHHHhccccceeEeeeecccCCh--HHHHHHhhhhheecccCcccchhccCCCcccccchhhHHHHHh
Confidence 88777777776544 2235699999999763 23333333211111 000000 000000000
Q ss_pred ----EEEecchhHHHHHHHHHHhhhc-CCcEEEEecchhHHHHHHHHHHhC-----------------------------
Q 013176 250 ----VEVVTEAEKYNRLIKLLKEVMD-GSRILIFTETKKGCDQVTRQLRMD----------------------------- 295 (448)
Q Consensus 250 ----~~~~~~~~~~~~l~~~l~~~~~-~~k~lVf~~~~~~~~~l~~~L~~~----------------------------- 295 (448)
.......+. +.++.++.+... +.++||||++++.|+.++..+.+.
T Consensus 434 a~l~~~~~g~~dp-D~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ 512 (1008)
T KOG0950|consen 434 ANLYSSNLGDEDP-DHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGI 512 (1008)
T ss_pred hhhhhhhcccCCC-cceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcc
Confidence 000000011 334444444333 557999999999999888655220
Q ss_pred ---------CCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCCCccEEEEcC----CCCChhhhhhcccc
Q 013176 296 ---------GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVKDIKCVVNYD----FPTSLEDYVHRIGR 362 (448)
Q Consensus 296 ---------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~Vi~~~----~p~s~~~~~Q~~GR 362 (448)
...++++|.+++.++|..+...|++|...|++||+.+..|+|+|.-+++|-.- .+.+..+|.|++||
T Consensus 513 ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GR 592 (1008)
T KOG0950|consen 513 LDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGR 592 (1008)
T ss_pred cchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhh
Confidence 12367889999999999999999999999999999999999999777776322 23377899999999
Q ss_pred cCCCCC--CceEEEEecCCChHHHHHH
Q 013176 363 TGRAGA--RGTAFTFFTHSNAKFARDL 387 (448)
Q Consensus 363 ~~R~g~--~g~~~~~~~~~~~~~~~~l 387 (448)
+||+|- .|.+++.+.+.+.+....+
T Consensus 593 AGR~gidT~GdsiLI~k~~e~~~~~~l 619 (1008)
T KOG0950|consen 593 AGRTGIDTLGDSILIIKSSEKKRVREL 619 (1008)
T ss_pred hhhcccccCcceEEEeeccchhHHHHH
Confidence 999975 4788999988888766544
No 104
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.94 E-value=2.1e-24 Score=212.02 Aligned_cols=286 Identities=26% Similarity=0.383 Sum_probs=194.5
Q ss_pred HHHHHH-CCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHH
Q 013176 39 LEVIAK-LGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQ 117 (448)
Q Consensus 39 ~~~~~~-~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~ 117 (448)
.+.+++ .|| .|+..|+-....+..|+++.+.||||.|||.--++.++....+ ++++++++||..|+.|..
T Consensus 72 ~~fF~k~~G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~k--------gkr~yii~PT~~Lv~Q~~ 142 (1187)
T COG1110 72 EEFFKKATGF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAKK--------GKRVYIIVPTTTLVRQVY 142 (1187)
T ss_pred HHHHHHhhCC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHhc--------CCeEEEEecCHHHHHHHH
Confidence 344444 567 9999999999999999999999999999996544433333222 678999999999999999
Q ss_pred HHHHHhhcCCC-ceEEE-EEcCCCch---HhHHHHhc-CCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCC-
Q 013176 118 EEALKFGSRAG-IRSTC-IYGGAPKG---PQIRDLRR-GVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMG- 190 (448)
Q Consensus 118 ~~~~~~~~~~~-~~~~~-~~~~~~~~---~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~- 190 (448)
+.++++....+ ..+.. .|+..+.. +...++.+ +.||+|+|..-|...+..- .--+|++|++|.+|.++..+
T Consensus 143 ~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L--~~~kFdfifVDDVDA~Lkask 220 (1187)
T COG1110 143 ERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEEL--SKLKFDFIFVDDVDAILKASK 220 (1187)
T ss_pred HHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHh--cccCCCEEEEccHHHHHhccc
Confidence 99999976554 33333 44443332 33445544 6999999976665544421 11368999999999765422
Q ss_pred ----------CHH-------HHHHHHHHc------------------------CCCcceEEEeccCchHH--HHHHHHHc
Q 013176 191 ----------FEP-------QIRKIVTQI------------------------RPDRQTLYWSATWPREV--ETLARQFL 227 (448)
Q Consensus 191 ----------~~~-------~~~~~~~~~------------------------~~~~~~v~~SAT~~~~~--~~~~~~~~ 227 (448)
|.. .+..+...+ .+..+++..|||..+.- ..+.+.++
T Consensus 221 NvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLl 300 (1187)
T COG1110 221 NVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELL 300 (1187)
T ss_pred cHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHh
Confidence 111 001111111 13457889999975432 12223333
Q ss_pred CCCeEEEeCCcccccccCcceEEEEecchhHHHHHHHHHHhhhcCCcEEEEecc---hhHHHHHHHHHHhCCCCeEEEcC
Q 013176 228 RNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKEVMDGSRILIFTET---KKGCDQVTRQLRMDGWPALSIHG 304 (448)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~k~lVf~~~---~~~~~~l~~~L~~~~~~~~~~~~ 304 (448)
+-.. .... ..+..+++.....+....+.++++..-. -.|||++. ++.++++++.|+..|+++..+|+
T Consensus 301 gFev----G~~~----~~LRNIvD~y~~~~~~e~~~elvk~lG~--GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a 370 (1187)
T COG1110 301 GFEV----GSGG----EGLRNIVDIYVESESLEKVVELVKKLGD--GGLIFVPIDYGREKAEELAEYLRSHGINAELIHA 370 (1187)
T ss_pred CCcc----Cccc----hhhhheeeeeccCccHHHHHHHHHHhCC--CeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeec
Confidence 2211 1111 1122222222223666677777777544 47999999 99999999999999999999988
Q ss_pred CCCHHHHHHHHHHHhcCCCCEEEEe----ccccCCCCCCC-ccEEEEcCCC
Q 013176 305 DKNQSERDWVLAEFRSGRSPIMTAT----DVAARGLDVKD-IKCVVNYDFP 350 (448)
Q Consensus 305 ~~~~~~r~~~~~~f~~g~~~vLv~T----~~~~~Gidi~~-~~~Vi~~~~p 350 (448)
. +.+.++.|..|++++||++ ..+.+|+|+|. ++.+|+++.|
T Consensus 371 ~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 371 E-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred c-----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 3 3568999999999999977 67889999996 8899999877
No 105
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.93 E-value=3.4e-24 Score=214.48 Aligned_cols=309 Identities=18% Similarity=0.247 Sum_probs=213.9
Q ss_pred cHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHH-hhcCCCc
Q 013176 51 TPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALK-FGSRAGI 129 (448)
Q Consensus 51 ~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~-~~~~~~~ 129 (448)
+....+.+.++.+++-++|.++||+|||...-..++..-. ..+..+.+.-|++--|...++.+.+ ++...+-
T Consensus 52 ~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~-------~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~ 124 (845)
T COG1643 52 TAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL-------GIAGKIGCTQPRRLAARSVAERVAEELGEKLGE 124 (845)
T ss_pred HHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc-------ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCc
Confidence 5566778888888899999999999999753332232211 2366899999999888888888764 4444443
Q ss_pred eEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccc-cCCC-HHHHHHHHHHcCCCcc
Q 013176 130 RSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRML-DMGF-EPQIRKIVTQIRPDRQ 207 (448)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~-~~~~-~~~~~~~~~~~~~~~~ 207 (448)
.|.+..-.. ........|-+.|.+.|++.+.... .++.+++|||||+|.=+ +..+ -..++.++...+++.+
T Consensus 125 ~VGY~iRfe------~~~s~~Trik~mTdGiLlrei~~D~-~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLK 197 (845)
T COG1643 125 TVGYSIRFE------SKVSPRTRIKVMTDGILLREIQNDP-LLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLK 197 (845)
T ss_pred eeeEEEEee------ccCCCCceeEEeccHHHHHHHhhCc-ccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCce
Confidence 443322111 1122345689999999999887654 48889999999999632 2111 1234444555666799
Q ss_pred eEEEeccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceEE-EEecchh-HHHHHHHHHHhhhc--CCcEEEEecchh
Q 013176 208 TLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVV-EVVTEAE-KYNRLIKLLKEVMD--GSRILIFTETKK 283 (448)
Q Consensus 208 ~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~l~~~l~~~~~--~~k~lVf~~~~~ 283 (448)
+|.||||+.. +.+...+..-|......... .+...+ ....... ..+.+...+..... .+.+|||.+-..
T Consensus 198 iIimSATld~--~rfs~~f~~apvi~i~GR~f-----PVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~ 270 (845)
T COG1643 198 LIIMSATLDA--ERFSAYFGNAPVIEIEGRTY-----PVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQR 270 (845)
T ss_pred EEEEecccCH--HHHHHHcCCCCEEEecCCcc-----ceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHH
Confidence 9999999865 35555544444443332222 111111 1111122 33444444443332 558999999999
Q ss_pred HHHHHHHHHHh----CCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCCCccEEEEcCCC---------
Q 013176 284 GCDQVTRQLRM----DGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVKDIKCVVNYDFP--------- 350 (448)
Q Consensus 284 ~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~Vi~~~~p--------- 350 (448)
+.+.+++.|.+ ....+..+|+.++.++..++++--..|..+|+++|+++++++.||++++||..+..
T Consensus 271 EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~ 350 (845)
T COG1643 271 EIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRT 350 (845)
T ss_pred HHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCccccccccccc
Confidence 99999999988 34678899999999999887777666767799999999999999999999976642
Q ss_pred ---------CChhhhhhcccccCCCCCCceEEEEecCCCh
Q 013176 351 ---------TSLEDYVHRIGRTGRAGARGTAFTFFTHSNA 381 (448)
Q Consensus 351 ---------~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 381 (448)
-|-++..||.|||||. .+|.|+-++++.+.
T Consensus 351 g~~~L~~~~ISqAsA~QRaGRAGR~-~pGicyRLyse~~~ 389 (845)
T COG1643 351 GLTRLETEPISKASADQRAGRAGRT-GPGICYRLYSEEDF 389 (845)
T ss_pred CceeeeEEEechhhhhhhccccccC-CCceEEEecCHHHH
Confidence 3667789999999999 68999999987543
No 106
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.93 E-value=3.1e-23 Score=215.73 Aligned_cols=348 Identities=19% Similarity=0.205 Sum_probs=217.2
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHhHHH----HhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCc
Q 013176 34 FPDYCLEVIAKLGFVEPTPIQAQGWP----MALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPT 109 (448)
Q Consensus 34 l~~~l~~~~~~~~~~~~~~~Q~~~i~----~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~ 109 (448)
+++.+.+.+...|| ++||.|.+++. .+..++++++.||||+|||++|++|++..+.. +.+++|.+||
T Consensus 231 ~~~~~~~~~~~~~~-~~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~~--------~~~vvi~t~t 301 (850)
T TIGR01407 231 LSSLFSKNIDRLGL-EYRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAIT--------EKPVVISTNT 301 (850)
T ss_pred ccHHHHHhhhhcCC-ccCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhcC--------CCeEEEEeCc
Confidence 33466777777899 79999998666 45567889999999999999999999887652 4579999999
Q ss_pred HHHHHHHHH-HHHHhhcCCC--ceEEEEEcCCCc----------------------------------------------
Q 013176 110 RELAVQIQE-EALKFGSRAG--IRSTCIYGGAPK---------------------------------------------- 140 (448)
Q Consensus 110 ~~L~~q~~~-~~~~~~~~~~--~~~~~~~~~~~~---------------------------------------------- 140 (448)
++|.+|+.. .+..+.+..+ +++..+.|....
T Consensus 302 ~~Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~ 381 (850)
T TIGR01407 302 KVLQSQLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGG 381 (850)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCc
Confidence 999999865 4555543333 566655553221
Q ss_pred -hHhH------------------------HHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCC-----
Q 013176 141 -GPQI------------------------RDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMG----- 190 (448)
Q Consensus 141 -~~~~------------------------~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~----- 190 (448)
...+ +.....++|||+++..|+..+......+...+++||||||++.+..
T Consensus 382 ~~~~~~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~ilp~~~~lIiDEAH~L~d~a~~~~~ 461 (850)
T TIGR01407 382 NKMFFAQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPELFPSFRDLIIDEAHHLPDIAENQLQ 461 (850)
T ss_pred chhhHHHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccccCCCCCEEEEECcchHHHHHHHHhc
Confidence 0000 1112347899999999888765444345667899999999865210
Q ss_pred --C-----HHH----------------------------------------------------------------HHHHH
Q 013176 191 --F-----EPQ----------------------------------------------------------------IRKIV 199 (448)
Q Consensus 191 --~-----~~~----------------------------------------------------------------~~~~~ 199 (448)
+ ... +....
T Consensus 462 ~~ls~~~~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~~~ 541 (850)
T TIGR01407 462 EELDYADIKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQLRKFD 541 (850)
T ss_pred ceeCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 0 000 00000
Q ss_pred HH---------------------c---------------------------CCCcceEEEeccCch--HHHHHHHHHcCC
Q 013176 200 TQ---------------------I---------------------------RPDRQTLYWSATWPR--EVETLARQFLRN 229 (448)
Q Consensus 200 ~~---------------------~---------------------------~~~~~~v~~SAT~~~--~~~~~~~~~~~~ 229 (448)
.. . +....+|++|||+.. +...+...+..+
T Consensus 542 ~~~~~~~~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~lGl~ 621 (850)
T TIGR01407 542 LALKDDFKNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQLLGLT 621 (850)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHhcCCC
Confidence 00 0 012367899999863 233333333322
Q ss_pred CeE-EEe-CCcccccccCcceEEE-Ee------cchhHHHHHHHHHHhhh--cCCcEEEEecchhHHHHHHHHHHhC--C
Q 013176 230 PYK-VII-GSLELKANQSINQVVE-VV------TEAEKYNRLIKLLKEVM--DGSRILIFTETKKGCDQVTRQLRMD--G 296 (448)
Q Consensus 230 ~~~-~~~-~~~~~~~~~~~~~~~~-~~------~~~~~~~~l~~~l~~~~--~~~k~lVf~~~~~~~~~l~~~L~~~--~ 296 (448)
... ... .+.. ........++. .. +.......+.+.+.+.. ..+++|||+++.+..+.++..|... .
T Consensus 622 ~~~~~~~~~spf-~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~~ 700 (850)
T TIGR01407 622 DVHFNTIEPTPL-NYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELPEF 700 (850)
T ss_pred ccccceecCCCC-CHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhccc
Confidence 211 111 1111 10111111110 01 11223334444444432 3568999999999999999999752 1
Q ss_pred CCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCCCc--cEEEEcCCCC-----------------------
Q 013176 297 WPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVKDI--KCVVNYDFPT----------------------- 351 (448)
Q Consensus 297 ~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~--~~Vi~~~~p~----------------------- 351 (448)
....++..+.. ..|..+++.|++++..||++|+.+++|||+|+. .+||+..+|.
T Consensus 701 ~~~~~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f 779 (850)
T TIGR01407 701 EGYEVLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPF 779 (850)
T ss_pred cCceEEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCch
Confidence 11223333333 468889999999999999999999999999974 4678788763
Q ss_pred -------ChhhhhhcccccCCCCCCceEEEEecCC--ChHHHHHHHHHHH
Q 013176 352 -------SLEDYVHRIGRTGRAGARGTAFTFFTHS--NAKFARDLIKILQ 392 (448)
Q Consensus 352 -------s~~~~~Q~~GR~~R~g~~g~~~~~~~~~--~~~~~~~l~~~~~ 392 (448)
....+.|.+||..|..++..++++++.. .+.+-+.+.+.+-
T Consensus 780 ~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R~~~~~Yg~~~~~sLp 829 (850)
T TIGR01407 780 YDYVLPMAIIRLRQALGRLIRRENDRGSIVILDRRLVGKRYGKRFEKSLP 829 (850)
T ss_pred HHhhHHHHHHHHHHhhccccccCCceEEEEEEccccccchHHHHHHHhCC
Confidence 1124779999999997776677777765 4455566655553
No 107
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.93 E-value=2.7e-25 Score=202.15 Aligned_cols=311 Identities=18% Similarity=0.213 Sum_probs=215.1
Q ss_pred CCcHHHHhHHHHhhcC---CcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhc
Q 013176 49 EPTPIQAQGWPMALKG---RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGS 125 (448)
Q Consensus 49 ~~~~~Q~~~i~~~~~~---~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~ 125 (448)
.+||||+..+..++.+ ++-+|+.|+|+|||++-+-++..- ++.+|+||.+...++||..++..|..
T Consensus 302 ~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~ti-----------kK~clvLcts~VSVeQWkqQfk~wst 370 (776)
T KOG1123|consen 302 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACTI-----------KKSCLVLCTSAVSVEQWKQQFKQWST 370 (776)
T ss_pred ccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeeee-----------cccEEEEecCccCHHHHHHHHHhhcc
Confidence 6899999999998865 578999999999999866544332 56799999999999999999999976
Q ss_pred CCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccc--------cCCCCccEEEEecccccccCCCHHHHHH
Q 013176 126 RAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQH--------TNLRRVTYLVLDEADRMLDMGFEPQIRK 197 (448)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~--------~~~~~~~~iIvDE~h~~~~~~~~~~~~~ 197 (448)
..+-.+..++++.. .....++.|+|+|+.++..--++.. +.-..++++++||+|-+...-|+..+.-
T Consensus 371 i~d~~i~rFTsd~K-----e~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRVlsi 445 (776)
T KOG1123|consen 371 IQDDQICRFTSDAK-----ERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLSI 445 (776)
T ss_pred cCccceEEeecccc-----ccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHHHHH
Confidence 55555555555432 2345678999999988754332221 1235689999999998866545544443
Q ss_pred HHHHcCCCcceEEEeccCchHHHHHHHH-HcCCCe--------------EEEeCCccccc------------ccCcceEE
Q 013176 198 IVTQIRPDRQTLYWSATWPREVETLARQ-FLRNPY--------------KVIIGSLELKA------------NQSINQVV 250 (448)
Q Consensus 198 ~~~~~~~~~~~v~~SAT~~~~~~~~~~~-~~~~~~--------------~~~~~~~~~~~------------~~~~~~~~ 250 (448)
+. .+++ +++|||+-.+...+... ++--|- .-.+...+... ....+...
T Consensus 446 v~----aHcK-LGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~l 520 (776)
T KOG1123|consen 446 VQ----AHCK-LGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRML 520 (776)
T ss_pred HH----HHhh-ccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhhe
Confidence 33 3333 89999985543222110 110010 00111111111 11122334
Q ss_pred EEecchhHHHHHHHHHHhhh-cCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhc-CCCCEEEE
Q 013176 251 EVVTEAEKYNRLIKLLKEVM-DGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRS-GRSPIMTA 328 (448)
Q Consensus 251 ~~~~~~~~~~~l~~~l~~~~-~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~vLv~ 328 (448)
...-.+.|+..+.-+++-+. .+.|+|||..++-....++-.|.+. +++|..++.+|..+++.|+. ..++-++.
T Consensus 521 LyvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~Kp-----fIYG~Tsq~ERm~ILqnFq~n~~vNTIFl 595 (776)
T KOG1123|consen 521 LYVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLGKP-----FIYGPTSQNERMKILQNFQTNPKVNTIFL 595 (776)
T ss_pred eeecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcCCc-----eEECCCchhHHHHHHHhcccCCccceEEE
Confidence 44455666666555554332 5789999999998888888877664 67999999999999999984 57899999
Q ss_pred eccccCCCCCCCccEEEEcCCCC-ChhhhhhcccccCCCCC------CceEEEEecCCChHHHH
Q 013176 329 TDVAARGLDVKDIKCVVNYDFPT-SLEDYVHRIGRTGRAGA------RGTAFTFFTHSNAKFAR 385 (448)
Q Consensus 329 T~~~~~Gidi~~~~~Vi~~~~p~-s~~~~~Q~~GR~~R~g~------~g~~~~~~~~~~~~~~~ 385 (448)
+.+..+.+|+|..+++|...... |-.+-.||.||.-|.-+ ....+.+++.+..++..
T Consensus 596 SKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM~Y 659 (776)
T KOG1123|consen 596 SKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEMYY 659 (776)
T ss_pred eeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHHHh
Confidence 99999999999999999888665 77899999999988522 24456777776555443
No 108
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.93 E-value=6.8e-23 Score=202.24 Aligned_cols=313 Identities=20% Similarity=0.267 Sum_probs=216.0
Q ss_pred CCcHHHHhHHHHhhcC----CcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhh
Q 013176 49 EPTPIQAQGWPMALKG----RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (448)
Q Consensus 49 ~~~~~Q~~~i~~~~~~----~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~ 124 (448)
.+++.|+.+++.+... ...++.+.||||||.+|+-.+...+.+ ++.+|+|+|-.+|..|+.++++...
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~--------GkqvLvLVPEI~Ltpq~~~rf~~rF 269 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQ--------GKQVLVLVPEIALTPQLLARFKARF 269 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHc--------CCEEEEEeccccchHHHHHHHHHHh
Confidence 6899999999998766 578999999999999988766666655 7889999999999999999999754
Q ss_pred cCCCceEEEEEcCCCchHh---HHHHh-cCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCC-----CHHHH
Q 013176 125 SRAGIRSTCIYGGAPKGPQ---IRDLR-RGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMG-----FEPQI 195 (448)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~-----~~~~~ 195 (448)
+.++..++++.+..+. |.+.. ....|+|+|-..+ ...+.++++||+||-|.-.... |...-
T Consensus 270 ---g~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl-------F~Pf~~LGLIIvDEEHD~sYKq~~~prYhARd 339 (730)
T COG1198 270 ---GAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL-------FLPFKNLGLIIVDEEHDSSYKQEDGPRYHARD 339 (730)
T ss_pred ---CCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh-------cCchhhccEEEEeccccccccCCcCCCcCHHH
Confidence 4677888888776554 44444 4689999995444 3357789999999999644321 22222
Q ss_pred HHHHHHcCCCcceEEEeccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceEEEEecchhHH-----HHHHHHHHhhh
Q 013176 196 RKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKY-----NRLIKLLKEVM 270 (448)
Q Consensus 196 ~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~~~l~~~~ 270 (448)
..+++.-..+.++|+-|||++- +......-+.....................++...+.... ..+.+.+++..
T Consensus 340 vA~~Ra~~~~~pvvLgSATPSL--ES~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l 417 (730)
T COG1198 340 VAVLRAKKENAPVVLGSATPSL--ESYANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTL 417 (730)
T ss_pred HHHHHHHHhCCCEEEecCCCCH--HHHHhhhcCceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHHH
Confidence 2333333467889999999754 4444433332233332222211112222333332222222 45555554433
Q ss_pred -cCCcEEEEecchh------------------------------------------------------------HHHHHH
Q 013176 271 -DGSRILIFTETKK------------------------------------------------------------GCDQVT 289 (448)
Q Consensus 271 -~~~k~lVf~~~~~------------------------------------------------------------~~~~l~ 289 (448)
.++++|+|.|++- -++++.
T Consensus 418 ~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~Gterie 497 (730)
T COG1198 418 ERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIE 497 (730)
T ss_pred hcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHH
Confidence 4778999998865 345556
Q ss_pred HHHHhC--CCCeEEEcCCCCHH--HHHHHHHHHhcCCCCEEEEeccccCCCCCCCccEEEEcCCCC------------Ch
Q 013176 290 RQLRMD--GWPALSIHGDKNQS--ERDWVLAEFRSGRSPIMTATDVAARGLDVKDIKCVVNYDFPT------------SL 353 (448)
Q Consensus 290 ~~L~~~--~~~~~~~~~~~~~~--~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~Vi~~~~p~------------s~ 353 (448)
+.|++. +.++..+.++.... .-+..+..|.+|+.+|||.|+++..|.|+|++..|...|... ..
T Consensus 498 eeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~f 577 (730)
T COG1198 498 EELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTF 577 (730)
T ss_pred HHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHH
Confidence 666554 55677777776543 345789999999999999999999999999999977666432 34
Q ss_pred hhhhhcccccCCCCCCceEEEEecCCCh
Q 013176 354 EDYVHRIGRTGRAGARGTAFTFFTHSNA 381 (448)
Q Consensus 354 ~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 381 (448)
..+.|..||+||.+.+|.+++-.-..+-
T Consensus 578 qll~QvaGRAgR~~~~G~VvIQT~~P~h 605 (730)
T COG1198 578 QLLMQVAGRAGRAGKPGEVVIQTYNPDH 605 (730)
T ss_pred HHHHHHHhhhccCCCCCeEEEEeCCCCc
Confidence 4588999999999889988776555443
No 109
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.92 E-value=4.3e-23 Score=196.72 Aligned_cols=326 Identities=19% Similarity=0.247 Sum_probs=220.8
Q ss_pred CCcHHHHhHHHHhhc----CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhh
Q 013176 49 EPTPIQAQGWPMALK----GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (448)
Q Consensus 49 ~~~~~Q~~~i~~~~~----~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~ 124 (448)
.+++||.+-+..+.+ +-+.|+...+|-|||+. .++++.++..... .....||+||...| ..|..++++|+
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQ-tIs~l~yl~~~~~----~~GPfLVi~P~StL-~NW~~Ef~rf~ 240 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQ-TISLLGYLKGRKG----IPGPFLVIAPKSTL-DNWMNEFKRFT 240 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHH-HHHHHHHHHHhcC----CCCCeEEEeeHhhH-HHHHHHHHHhC
Confidence 689999998877653 45789999999999976 4455555544221 23447999996665 68899999987
Q ss_pred cCCCceEEEEEcCCCchHhHHH-H--hcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCCCHHHHHHHHHH
Q 013176 125 SRAGIRSTCIYGGAPKGPQIRD-L--RRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQ 201 (448)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~ 201 (448)
. ++++++++|+........+ + ....+|+|||++..+.- ...+.--++.++||||+|++-+.. ..+..+++.
T Consensus 241 P--~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~d--k~~lk~~~W~ylvIDEaHRiKN~~--s~L~~~lr~ 314 (971)
T KOG0385|consen 241 P--SLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKD--KSFLKKFNWRYLVIDEAHRIKNEK--SKLSKILRE 314 (971)
T ss_pred C--CcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhh--HHHHhcCCceEEEechhhhhcchh--hHHHHHHHH
Confidence 5 5788999998755444322 2 23689999999998654 222333457899999999998754 344566666
Q ss_pred cCCCcceEEEeccCchH-H---HHHHHHHcC-------------------------------------------------
Q 013176 202 IRPDRQTLYWSATWPRE-V---ETLARQFLR------------------------------------------------- 228 (448)
Q Consensus 202 ~~~~~~~v~~SAT~~~~-~---~~~~~~~~~------------------------------------------------- 228 (448)
+.. ...+++|+||-.+ + ..+...+++
T Consensus 315 f~~-~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLp 393 (971)
T KOG0385|consen 315 FKT-DNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLP 393 (971)
T ss_pred hcc-cceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCC
Confidence 643 3457789996321 0 000000000
Q ss_pred CCeEEEeCCcc-------------------------------------------------cccccCcceEEEEecchhHH
Q 013176 229 NPYKVIIGSLE-------------------------------------------------LKANQSINQVVEVVTEAEKY 259 (448)
Q Consensus 229 ~~~~~~~~~~~-------------------------------------------------~~~~~~~~~~~~~~~~~~~~ 259 (448)
....+.+.... ..+.......-..+....|+
T Consensus 394 pKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~nSGKm 473 (971)
T KOG0385|consen 394 PKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVTNSGKM 473 (971)
T ss_pred CcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHHhcCcce
Confidence 00000000000 00000000000001112244
Q ss_pred HHHHHHHHhhh-cCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCC---CCEEEEeccccCC
Q 013176 260 NRLIKLLKEVM-DGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGR---SPIMTATDVAARG 335 (448)
Q Consensus 260 ~~l~~~l~~~~-~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~---~~vLv~T~~~~~G 335 (448)
..|-.+|.... .|.+||||..-......+.++..-+++..+.+.|+++.++|...++.|.... .-+|++|.+.+.|
T Consensus 474 ~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLG 553 (971)
T KOG0385|consen 474 LVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLG 553 (971)
T ss_pred ehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccc
Confidence 45555555443 4779999999999999999998889999999999999999999999997543 3368899999999
Q ss_pred CCCCCccEEEEcCCCCChhhhhhcccccCCCCCCceEEEEecCCChHHHHHH
Q 013176 336 LDVKDIKCVVNYDFPTSLEDYVHRIGRTGRAGARGTAFTFFTHSNAKFARDL 387 (448)
Q Consensus 336 idi~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l 387 (448)
||+-.+++||+||..|+|..-+|+.-||.|.|+...+.+|-.-.+...-+.+
T Consensus 554 INL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~I 605 (971)
T KOG0385|consen 554 INLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEEKI 605 (971)
T ss_pred cccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHHHH
Confidence 9999999999999999999999999999999998888666544443333333
No 110
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.92 E-value=6e-23 Score=207.08 Aligned_cols=300 Identities=15% Similarity=0.158 Sum_probs=179.4
Q ss_pred CCcHHHHhHHHHhhc----------CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHH
Q 013176 49 EPTPIQAQGWPMALK----------GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQE 118 (448)
Q Consensus 49 ~~~~~Q~~~i~~~~~----------~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~ 118 (448)
-++++|.+|+..+.. .+..+++++||||||++++..+...+.. ...+++||++|+.+|..|+.+
T Consensus 238 ~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~------~~~~~vl~lvdR~~L~~Q~~~ 311 (667)
T TIGR00348 238 YQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALEL------LKNPKVFFVVDRRELDYQLMK 311 (667)
T ss_pred ehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhh------cCCCeEEEEECcHHHHHHHHH
Confidence 379999999987642 2478999999999999876655444321 136789999999999999999
Q ss_pred HHHHhhcCCCceEEEEEcCCCchHhHHHHhc-CCcEEEEccHHHHHHHHcccc--CCCCc-cEEEEecccccccCCCHHH
Q 013176 119 EALKFGSRAGIRSTCIYGGAPKGPQIRDLRR-GVEIVIATPGRLIDMLEAQHT--NLRRV-TYLVLDEADRMLDMGFEPQ 194 (448)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~--~~~~~-~~iIvDE~h~~~~~~~~~~ 194 (448)
.+..+..... ....+.......+.. ...|+|+|.++|...+..... ..... .+||+||||+..... .
T Consensus 312 ~f~~~~~~~~------~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~~---~ 382 (667)
T TIGR00348 312 EFQSLQKDCA------ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYGE---L 382 (667)
T ss_pred HHHhhCCCCC------cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccchH---H
Confidence 9999753210 111112122222322 368999999999764432111 11111 389999999864322 2
Q ss_pred HHHHHHHcCCCcceEEEeccCchHHHH-HHHHHc---CCCeEEEeCCcccccccCc-----------------------c
Q 013176 195 IRKIVTQIRPDRQTLYWSATWPREVET-LARQFL---RNPYKVIIGSLELKANQSI-----------------------N 247 (448)
Q Consensus 195 ~~~~~~~~~~~~~~v~~SAT~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~-----------------------~ 247 (448)
...+...+ ++..+++|||||...... ....+. +.+.. .....+....... .
T Consensus 383 ~~~l~~~~-p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~-~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~ 460 (667)
T TIGR00348 383 AKNLKKAL-KNASFFGFTGTPIFKKDRDTSLTFAYVFGRYLH-RYFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFD 460 (667)
T ss_pred HHHHHhhC-CCCcEEEEeCCCcccccccccccccCCCCCeEE-EeeHHHHhhcCCeeeEEEEecchhhccChHHHHHHHH
Confidence 22232344 567899999998532111 001111 11111 0000000000000 0
Q ss_pred eEEEE----ec-------------------chhHHHHHH----HHHHhhhc--CCcEEEEecchhHHHHHHHHHHhC---
Q 013176 248 QVVEV----VT-------------------EAEKYNRLI----KLLKEVMD--GSRILIFTETKKGCDQVTRQLRMD--- 295 (448)
Q Consensus 248 ~~~~~----~~-------------------~~~~~~~l~----~~l~~~~~--~~k~lVf~~~~~~~~~l~~~L~~~--- 295 (448)
..... .. .+.....+. +.+..... +.+++|||.++.+|..+++.|.+.
T Consensus 461 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~ 540 (667)
T TIGR00348 461 EIFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNE 540 (667)
T ss_pred HHHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhccc
Confidence 00000 00 000011111 11111112 479999999999999999988664
Q ss_pred --CCCeEEEcCCCCHH---------------------HHHHHHHHHhc-CCCCEEEEeccccCCCCCCCccEEEEcCCCC
Q 013176 296 --GWPALSIHGDKNQS---------------------ERDWVLAEFRS-GRSPIMTATDVAARGLDVKDIKCVVNYDFPT 351 (448)
Q Consensus 296 --~~~~~~~~~~~~~~---------------------~r~~~~~~f~~-g~~~vLv~T~~~~~Gidi~~~~~Vi~~~~p~ 351 (448)
+....++++..+.+ ....++++|++ +.++|||+++++.+|+|.|.+++++...+..
T Consensus 541 ~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKplk 620 (667)
T TIGR00348 541 KFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKPLK 620 (667)
T ss_pred ccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEecccc
Confidence 23345555543322 12468888976 6889999999999999999999999888666
Q ss_pred ChhhhhhcccccCCC
Q 013176 352 SLEDYVHRIGRTGRA 366 (448)
Q Consensus 352 s~~~~~Q~~GR~~R~ 366 (448)
+. .++|++||+.|.
T Consensus 621 ~h-~LlQai~R~nR~ 634 (667)
T TIGR00348 621 YH-GLLQAIARTNRI 634 (667)
T ss_pred cc-HHHHHHHHhccc
Confidence 54 589999999994
No 111
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.92 E-value=4.1e-22 Score=193.52 Aligned_cols=320 Identities=22% Similarity=0.231 Sum_probs=224.6
Q ss_pred HCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013176 44 KLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (448)
Q Consensus 44 ~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~ 123 (448)
.+|+ .|++.|.-..-.+++| -+..+.||.|||+++.+|++..+.. +..|.+++|+..||.|-++++..+
T Consensus 74 ~lg~-r~ydvQlig~l~Ll~G--~VaEM~TGEGKTLvA~l~a~l~AL~--------G~~VhvvT~NdyLA~RDae~m~~l 142 (764)
T PRK12326 74 TLGL-RPFDVQLLGALRLLAG--DVIEMATGEGKTLAGAIAAAGYALQ--------GRRVHVITVNDYLARRDAEWMGPL 142 (764)
T ss_pred HcCC-CcchHHHHHHHHHhCC--CcccccCCCCHHHHHHHHHHHHHHc--------CCCeEEEcCCHHHHHHHHHHHHHH
Confidence 3688 8999998888887766 5779999999999999999887766 677999999999999999999999
Q ss_pred hcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHH-HHHHcc------ccCCCCccEEEEecccccccCC------
Q 013176 124 GSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLI-DMLEAQ------HTNLRRVTYLVLDEADRMLDMG------ 190 (448)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~-~~~~~~------~~~~~~~~~iIvDE~h~~~~~~------ 190 (448)
...+++++.++.++.+..+....+ .+||+++|...|- +++... ....+.+.+.||||+|.++-..
T Consensus 143 y~~LGLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLi 220 (764)
T PRK12326 143 YEALGLTVGWITEESTPEERRAAY--ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPLV 220 (764)
T ss_pred HHhcCCEEEEECCCCCHHHHHHHH--cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCcee
Confidence 999999999998876654433333 5899999987652 333322 1134568899999999754100
Q ss_pred ---------CHHHHHHHHHHcCC---------------------------------------------------------
Q 013176 191 ---------FEPQIRKIVTQIRP--------------------------------------------------------- 204 (448)
Q Consensus 191 ---------~~~~~~~~~~~~~~--------------------------------------------------------- 204 (448)
....+..+...+.+
T Consensus 221 ISg~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~ 300 (764)
T PRK12326 221 LAGSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQR 300 (764)
T ss_pred eeCCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhc
Confidence 00001111111100
Q ss_pred -------------------------------------------------------------CcceEEEeccCchHHHHHH
Q 013176 205 -------------------------------------------------------------DRQTLYWSATWPREVETLA 223 (448)
Q Consensus 205 -------------------------------------------------------------~~~~v~~SAT~~~~~~~~~ 223 (448)
..++.+||+|.....+.+.
T Consensus 301 d~dYiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~ 380 (764)
T PRK12326 301 DVHYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLR 380 (764)
T ss_pred CCcEEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHHH
Confidence 0155667777655444443
Q ss_pred HHHcCCCeEEEeCCcccccccCcceEEEEecchhHHHHHHHHHHhh-hcCCcEEEEecchhHHHHHHHHHHhCCCCeEEE
Q 013176 224 RQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKEV-MDGSRILIFTETKKGCDQVTRQLRMDGWPALSI 302 (448)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~ 302 (448)
. .+.-++. .++...+...... ....+.....|+..+.+.+.+. ..+.++||.+.+++..+.+++.|++.+++..++
T Consensus 381 ~-iY~l~Vv-~IPtnkp~~R~d~-~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vL 457 (764)
T PRK12326 381 Q-FYDLGVS-VIPPNKPNIREDE-ADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVL 457 (764)
T ss_pred H-HhCCcEE-ECCCCCCceeecC-CCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceee
Confidence 3 3333322 2222221222111 2233445667888777766554 468899999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHhcC-CCCEEEEeccccCCCCCCC---------------ccEEEEcCCCCChhhhhhcccccCCC
Q 013176 303 HGDKNQSERDWVLAEFRSG-RSPIMTATDVAARGLDVKD---------------IKCVVNYDFPTSLEDYVHRIGRTGRA 366 (448)
Q Consensus 303 ~~~~~~~~r~~~~~~f~~g-~~~vLv~T~~~~~Gidi~~---------------~~~Vi~~~~p~s~~~~~Q~~GR~~R~ 366 (448)
++.....+ .+++.+ .| .-.|.|||+++++|.||.= ==+||....+.|..--.|..||+||.
T Consensus 458 NAk~~~~E-A~IIa~--AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQ 534 (764)
T PRK12326 458 NAKNDAEE-ARIIAE--AGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQ 534 (764)
T ss_pred ccCchHhH-HHHHHh--cCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccC
Confidence 98755443 333332 33 3459999999999999861 12688888999999999999999999
Q ss_pred CCCceEEEEecCCChH
Q 013176 367 GARGTAFTFFTHSNAK 382 (448)
Q Consensus 367 g~~g~~~~~~~~~~~~ 382 (448)
|.+|.+..|++-.|.-
T Consensus 535 GDpGss~f~lSleDdl 550 (764)
T PRK12326 535 GDPGSSVFFVSLEDDV 550 (764)
T ss_pred CCCCceeEEEEcchhH
Confidence 9999999888876543
No 112
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.91 E-value=8.1e-23 Score=188.03 Aligned_cols=171 Identities=23% Similarity=0.282 Sum_probs=135.1
Q ss_pred CcceEEEeccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceEEEEecchhHHHHHHHHHHh-hhcCCcEEEEecchh
Q 013176 205 DRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKE-VMDGSRILIFTETKK 283 (448)
Q Consensus 205 ~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~k~lVf~~~~~ 283 (448)
..|++++|||+.+..... ..+......+... ..+.-.+.+-+.....+.|+.-++. ...+.++||-+-|++
T Consensus 386 ~~q~i~VSATPg~~E~e~---s~~~vveQiIRPT-----GLlDP~ievRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKk 457 (663)
T COG0556 386 IPQTIYVSATPGDYELEQ---SGGNVVEQIIRPT-----GLLDPEIEVRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKK 457 (663)
T ss_pred cCCEEEEECCCChHHHHh---ccCceeEEeecCC-----CCCCCceeeecCCCcHHHHHHHHHHHHhcCCeEEEEeehHH
Confidence 358999999987643222 2223333333222 2233334445556667777766654 445789999999999
Q ss_pred HHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCCCccEEEEcCCCC-----Chhhhhh
Q 013176 284 GCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVKDIKCVVNYDFPT-----SLEDYVH 358 (448)
Q Consensus 284 ~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~Vi~~~~p~-----s~~~~~Q 358 (448)
.|+.+.++|++.|+++..+|++...-+|.+++++++.|..+|||..+.+-+|+|+|.|+.|.++|... |..+++|
T Consensus 458 mAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQ 537 (663)
T COG0556 458 MAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQ 537 (663)
T ss_pred HHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999654 8999999
Q ss_pred cccccCCCCCCceEEEEecCCChHHH
Q 013176 359 RIGRTGRAGARGTAFTFFTHSNAKFA 384 (448)
Q Consensus 359 ~~GR~~R~g~~g~~~~~~~~~~~~~~ 384 (448)
-+|||.|. -.|.++++.+.-...+.
T Consensus 538 tIGRAARN-~~GkvIlYAD~iT~sM~ 562 (663)
T COG0556 538 TIGRAARN-VNGKVILYADKITDSMQ 562 (663)
T ss_pred HHHHHhhc-cCCeEEEEchhhhHHHH
Confidence 99999997 67999999886554443
No 113
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.91 E-value=4.1e-23 Score=200.02 Aligned_cols=295 Identities=19% Similarity=0.205 Sum_probs=189.5
Q ss_pred CCcHHHHhHHHHhh----cC-CcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013176 49 EPTPIQAQGWPMAL----KG-RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (448)
Q Consensus 49 ~~~~~Q~~~i~~~~----~~-~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~ 123 (448)
.+|+||..|+..+. ++ +..|+++.||+|||.+++ +++..+.+... .++||+|+-+++|++|....+..+
T Consensus 165 ~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAi-aii~rL~r~~~-----~KRVLFLaDR~~Lv~QA~~af~~~ 238 (875)
T COG4096 165 GPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAI-AIIDRLIKSGW-----VKRVLFLADRNALVDQAYGAFEDF 238 (875)
T ss_pred cchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHH-HHHHHHHhcch-----hheeeEEechHHHHHHHHHHHHHh
Confidence 68999999997655 44 468999999999999854 45555555433 678999999999999999998887
Q ss_pred hcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHcc-----ccCCCCccEEEEecccccccCCCHHHHHHH
Q 013176 124 GSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQ-----HTNLRRVTYLVLDEADRMLDMGFEPQIRKI 198 (448)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~-----~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~ 198 (448)
.... -.+..+.+.. . ...+.|.++|++.+....... .+....|++||+||||+- ....+..+
T Consensus 239 ~P~~-~~~n~i~~~~-~-------~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRg----i~~~~~~I 305 (875)
T COG4096 239 LPFG-TKMNKIEDKK-G-------DTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRG----IYSEWSSI 305 (875)
T ss_pred CCCc-cceeeeeccc-C-------CcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhh----HHhhhHHH
Confidence 6542 2222222111 1 114789999999998877655 223455899999999984 34455577
Q ss_pred HHHcCCCcceEEEeccCchHHHHHHHHHc-CCCeEEE------------------eCC------cccccc--------cC
Q 013176 199 VTQIRPDRQTLYWSATWPREVETLARQFL-RNPYKVI------------------IGS------LELKAN--------QS 245 (448)
Q Consensus 199 ~~~~~~~~~~v~~SAT~~~~~~~~~~~~~-~~~~~~~------------------~~~------~~~~~~--------~~ 245 (448)
+..+.+..+ ++||||.......--.++ +.|.... +.. ...... ..
T Consensus 306 ~dYFdA~~~--gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~ 383 (875)
T COG4096 306 LDYFDAATQ--GLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEA 383 (875)
T ss_pred HHHHHHHHH--hhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhccc
Confidence 777654444 449998653322222222 2222111 000 000000 00
Q ss_pred c---ceEEEEec------chhHHHHHHHHHHhhhc-------CCcEEEEecchhHHHHHHHHHHhCC-----CCeEEEcC
Q 013176 246 I---NQVVEVVT------EAEKYNRLIKLLKEVMD-------GSRILIFTETKKGCDQVTRQLRMDG-----WPALSIHG 304 (448)
Q Consensus 246 ~---~~~~~~~~------~~~~~~~l~~~l~~~~~-------~~k~lVf~~~~~~~~~l~~~L~~~~-----~~~~~~~~ 304 (448)
+ .+.+.... .....+.+...+.+... -.|+||||.+..+|+.+...|.+.. --+..+++
T Consensus 384 i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~ 463 (875)
T COG4096 384 IDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITG 463 (875)
T ss_pred cCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEec
Confidence 0 00000000 01122233333333222 2489999999999999999997752 23566676
Q ss_pred CCCHHHHHHHHHHHhc--CCCCEEEEeccccCCCCCCCccEEEEcCCCCChhhhhhcccccCCC
Q 013176 305 DKNQSERDWVLAEFRS--GRSPIMTATDVAARGLDVKDIKCVVNYDFPTSLEDYVHRIGRTGRA 366 (448)
Q Consensus 305 ~~~~~~r~~~~~~f~~--g~~~vLv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~ 366 (448)
+... -...+..|.. .-.+|.++.+++.+|||+|.|..+|++..-.|...|.|++||..|.
T Consensus 464 d~~~--~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 464 DAEQ--AQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred cchh--hHHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 6543 3345566643 3346777889999999999999999999999999999999999994
No 114
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.91 E-value=2.4e-21 Score=193.24 Aligned_cols=135 Identities=20% Similarity=0.356 Sum_probs=118.2
Q ss_pred cchhHHHHHHHHHHhhh-cCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccc
Q 013176 254 TEAEKYNRLIKLLKEVM-DGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVA 332 (448)
Q Consensus 254 ~~~~~~~~l~~~l~~~~-~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~ 332 (448)
....++..+.+.++... .+.++||||+++..++.+++.|.+.++++..+|++++..+|.++++.|+.|+++|||||+.+
T Consensus 423 ~~~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L 502 (655)
T TIGR00631 423 PTDGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLL 502 (655)
T ss_pred eccchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChh
Confidence 34456666776666543 46799999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCccEEEEcC-----CCCChhhhhhcccccCCCCCCceEEEEecCCChHHHHHHHH
Q 013176 333 ARGLDVKDIKCVVNYD-----FPTSLEDYVHRIGRTGRAGARGTAFTFFTHSNAKFARDLIK 389 (448)
Q Consensus 333 ~~Gidi~~~~~Vi~~~-----~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~ 389 (448)
++|+|+|++++||++| .|.+..+|+|++||+||. ..|.++++++..+..+...+.+
T Consensus 503 ~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~~ 563 (655)
T TIGR00631 503 REGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIEE 563 (655)
T ss_pred cCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHHH
Confidence 9999999999999998 788999999999999998 6899999999876655554443
No 115
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.91 E-value=3e-22 Score=199.83 Aligned_cols=129 Identities=22% Similarity=0.347 Sum_probs=113.3
Q ss_pred ecchhHHHHHHHHHHhh-hcCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEecc
Q 013176 253 VTEAEKYNRLIKLLKEV-MDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDV 331 (448)
Q Consensus 253 ~~~~~~~~~l~~~l~~~-~~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~ 331 (448)
.....|+..+.+.+.+. ..+.++||||+|++.++.+++.|++.++++.++|+ .+.+|+..+..|..+...|+|||++
T Consensus 578 ~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNM 655 (1025)
T PRK12900 578 KTRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNM 655 (1025)
T ss_pred cCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccC
Confidence 34556888888888654 35779999999999999999999999999999997 5778999999999999999999999
Q ss_pred ccCCCCCC---Ccc-----EEEEcCCCCChhhhhhcccccCCCCCCceEEEEecCCChHH
Q 013176 332 AARGLDVK---DIK-----CVVNYDFPTSLEDYVHRIGRTGRAGARGTAFTFFTHSNAKF 383 (448)
Q Consensus 332 ~~~Gidi~---~~~-----~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 383 (448)
+++|+||+ .+. +||.++.|.|...|.|++||+||.|.+|.+++|++..|.-+
T Consensus 656 AGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~Lm 715 (1025)
T PRK12900 656 AGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDELM 715 (1025)
T ss_pred cCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHHHH
Confidence 99999999 443 45888899999999999999999999999999998776543
No 116
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.90 E-value=4.5e-22 Score=188.49 Aligned_cols=309 Identities=21% Similarity=0.275 Sum_probs=208.9
Q ss_pred cHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHH-HhhcCCCc
Q 013176 51 TPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEAL-KFGSRAGI 129 (448)
Q Consensus 51 ~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~-~~~~~~~~ 129 (448)
+.+-.+.+..+.+++-+++.|+||||||.- +.-.+...--. ...++.+.-|++.-|..++++.. +.+..+|-
T Consensus 53 ~~~r~~il~~ve~nqvlIviGeTGsGKSTQ-ipQyL~eaG~~------~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~ 125 (674)
T KOG0922|consen 53 YKYRDQILYAVEDNQVLIVIGETGSGKSTQ-IPQYLAEAGFA------SSGKIACTQPRRVAAVSLAKRVAEEMGCQLGE 125 (674)
T ss_pred HHHHHHHHHHHHHCCEEEEEcCCCCCcccc-HhHHHHhcccc------cCCcEEeecCchHHHHHHHHHHHHHhCCCcCc
Confidence 444567788888888999999999999974 22222221111 13349999999988888887765 45555554
Q ss_pred eEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCC--CHHHHHHHHHHcCCCcc
Q 013176 130 RSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMG--FEPQIRKIVTQIRPDRQ 207 (448)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~--~~~~~~~~~~~~~~~~~ 207 (448)
.|..-.--.+ .......|.+.|.+.|++.+... ..++.+++||+||||.-.-.. ..-.++.+++. +++.+
T Consensus 126 ~VGY~IRFed------~ts~~TrikymTDG~LLRE~l~D-p~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~-R~~Lk 197 (674)
T KOG0922|consen 126 EVGYTIRFED------STSKDTRIKYMTDGMLLREILKD-PLLSKYSVIILDEAHERSLHTDILLGLLKKILKK-RPDLK 197 (674)
T ss_pred eeeeEEEecc------cCCCceeEEEecchHHHHHHhcC-CccccccEEEEechhhhhhHHHHHHHHHHHHHhc-CCCce
Confidence 4433221110 11123569999999999876653 347889999999999622110 11223333332 35678
Q ss_pred eEEEeccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceEEEEecchhHHHHHHHHHHh---hhcCCcEEEEecchhH
Q 013176 208 TLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKE---VMDGSRILIFTETKKG 284 (448)
Q Consensus 208 ~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~---~~~~~k~lVf~~~~~~ 284 (448)
++.||||+.. +.+...+..-+......... .+...+...+..+..+..+..+.+ ..+.+-+|||.+..++
T Consensus 198 lIimSATlda--~kfS~yF~~a~i~~i~GR~f-----PVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeE 270 (674)
T KOG0922|consen 198 LIIMSATLDA--EKFSEYFNNAPILTIPGRTF-----PVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEE 270 (674)
T ss_pred EEEEeeeecH--HHHHHHhcCCceEeecCCCC-----ceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHH
Confidence 9999999864 45555555545544433322 222333333444444433332222 2345579999999999
Q ss_pred HHHHHHHHHhC----C--C--CeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCCCccEEEEcCC-------
Q 013176 285 CDQVTRQLRMD----G--W--PALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVKDIKCVVNYDF------- 349 (448)
Q Consensus 285 ~~~l~~~L~~~----~--~--~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~Vi~~~~------- 349 (448)
.+.+++.|.+. . . -+..+|+.++.+++.++++--..|..+|+++|+++++.+.||++..||..+.
T Consensus 271 Ie~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~ 350 (674)
T KOG0922|consen 271 IEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYN 350 (674)
T ss_pred HHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeec
Confidence 99999999764 1 1 2467899999999988888777889999999999999999999999996663
Q ss_pred -----------CCChhhhhhcccccCCCCCCceEEEEecCCChH
Q 013176 350 -----------PTSLEDYVHRIGRTGRAGARGTAFTFFTHSNAK 382 (448)
Q Consensus 350 -----------p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~ 382 (448)
|-|-++-.||.|||||. .+|.|+-++++.+.+
T Consensus 351 p~~g~~~L~v~~ISkasA~QRaGRAGRt-~pGkcyRLYte~~~~ 393 (674)
T KOG0922|consen 351 PRTGLDSLIVVPISKASANQRAGRAGRT-GPGKCYRLYTESAYD 393 (674)
T ss_pred cccCccceeEEechHHHHhhhcccCCCC-CCceEEEeeeHHHHh
Confidence 34777889999999999 689999999876553
No 117
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.90 E-value=1.7e-21 Score=193.80 Aligned_cols=321 Identities=20% Similarity=0.233 Sum_probs=217.8
Q ss_pred HCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013176 44 KLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (448)
Q Consensus 44 ~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~ 123 (448)
..|+ .|+++|.-.--.+ .+.-+..+.||+|||+++.+|++..+.. +..|.+++|+..||.|-++++..+
T Consensus 78 ~lGm-~~ydVQliGg~~L--h~G~iaEM~TGEGKTLvA~l~a~l~al~--------G~~VhvvT~ndyLA~RD~e~m~~l 146 (913)
T PRK13103 78 VMGM-RHFDVQLIGGMTL--HEGKIAEMRTGEGKTLVGTLAVYLNALS--------GKGVHVVTVNDYLARRDANWMRPL 146 (913)
T ss_pred HhCC-CcchhHHHhhhHh--ccCccccccCCCCChHHHHHHHHHHHHc--------CCCEEEEeCCHHHHHHHHHHHHHH
Confidence 3677 7788886544444 4557889999999999999999877666 677999999999999999999999
Q ss_pred hcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHH-HHHHHccc------cCCCCccEEEEecccccccCC------
Q 013176 124 GSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRL-IDMLEAQH------TNLRRVTYLVLDEADRMLDMG------ 190 (448)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~~~~~~------~~~~~~~~iIvDE~h~~~~~~------ 190 (448)
...+++++.++.++.+..+....+ .++|+++|...| ++++.... ...+.+.++||||+|.++-..
T Consensus 147 ~~~lGl~v~~i~~~~~~~err~~Y--~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPLI 224 (913)
T PRK13103 147 YEFLGLSVGIVTPFQPPEEKRAAY--AADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTPLI 224 (913)
T ss_pred hcccCCEEEEECCCCCHHHHHHHh--cCCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCCcee
Confidence 999999999998876654443333 389999999876 33333221 124678999999999754100
Q ss_pred -------C---HHHHHHHHHHcC-------------------CC------------------------------------
Q 013176 191 -------F---EPQIRKIVTQIR-------------------PD------------------------------------ 205 (448)
Q Consensus 191 -------~---~~~~~~~~~~~~-------------------~~------------------------------------ 205 (448)
. ...+..+...+. ..
T Consensus 225 ISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~~ 304 (913)
T PRK13103 225 ISGQAEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHNL 304 (913)
T ss_pred ecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhhh
Confidence 0 000111111110 00
Q ss_pred --------------------------------------------------------------------------------
Q 013176 206 -------------------------------------------------------------------------------- 205 (448)
Q Consensus 206 -------------------------------------------------------------------------------- 205 (448)
T Consensus 305 ~~~~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y 384 (913)
T PRK13103 305 GLLTHVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLY 384 (913)
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhc
Confidence
Q ss_pred cceEEEeccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceEEEEecchhHHHHHHHHHHhhh-cCCcEEEEecchhH
Q 013176 206 RQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKEVM-DGSRILIFTETKKG 284 (448)
Q Consensus 206 ~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~k~lVf~~~~~~ 284 (448)
.++.+||+|.......+.. .++-++.. ++...+..+..... ..+.+...|+..+.+.+.+.. .+.++||-+.+++.
T Consensus 385 ~kLsGMTGTa~te~~Ef~~-iY~l~Vv~-IPTnkP~~R~D~~d-~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~ 461 (913)
T PRK13103 385 NKLSGMTGTADTEAFEFRQ-IYGLDVVV-IPPNKPLARKDFND-LVYLTAEEKYAAIITDIKECMALGRPVLVGTATIET 461 (913)
T ss_pred chhccCCCCCHHHHHHHHH-HhCCCEEE-CCCCCCcccccCCC-eEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHH
Confidence 0334455554333332222 22222211 22211111211222 234456678888877666544 48899999999999
Q ss_pred HHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcC-CCCEEEEeccccCCCCCC------------------------
Q 013176 285 CDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSG-RSPIMTATDVAARGLDVK------------------------ 339 (448)
Q Consensus 285 ~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~vLv~T~~~~~Gidi~------------------------ 339 (448)
.+.+++.|++.+++..+++......+-..+-+ .| .-.|.|||+++++|.||.
T Consensus 462 SE~ls~~L~~~gi~h~VLNAk~~~~EA~IIa~---AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~ 538 (913)
T PRK13103 462 SEHMSNLLKKEGIEHKVLNAKYHEKEAEIIAQ---AGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIK 538 (913)
T ss_pred HHHHHHHHHHcCCcHHHhccccchhHHHHHHc---CCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHH
Confidence 99999999999999988888755433333332 34 345999999999999994
Q ss_pred -------------CccEEEEcCCCCChhhhhhcccccCCCCCCceEEEEecCCChHH
Q 013176 340 -------------DIKCVVNYDFPTSLEDYVHRIGRTGRAGARGTAFTFFTHSNAKF 383 (448)
Q Consensus 340 -------------~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 383 (448)
+==+||-...+.|..--.|..||+||.|.+|.+..|++-.|.-+
T Consensus 539 ~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~Lm 595 (913)
T PRK13103 539 ADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDSLM 595 (913)
T ss_pred HHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHHH
Confidence 11268888889999999999999999999999999988765543
No 118
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.89 E-value=1.3e-21 Score=187.57 Aligned_cols=314 Identities=19% Similarity=0.214 Sum_probs=209.5
Q ss_pred CCcHHHHhHHHHhh----cCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhh
Q 013176 49 EPTPIQAQGWPMAL----KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (448)
Q Consensus 49 ~~~~~Q~~~i~~~~----~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~ 124 (448)
.|++||++.+..+. ++..-|+-..+|-|||+. +++.+..+....+ --..+||+|| ..++.||..++..|.
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQ-iisFLaaL~~S~k----~~~paLIVCP-~Tii~qW~~E~~~w~ 278 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQ-IISFLAALHHSGK----LTKPALIVCP-ATIIHQWMKEFQTWW 278 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchh-HHHHHHHHhhccc----ccCceEEEcc-HHHHHHHHHHHHHhC
Confidence 57999999998765 345678999999999976 3444444433311 1356999999 678899999999986
Q ss_pred cCCCceEEEEEcCCCch--------HhHH-----HHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCCC
Q 013176 125 SRAGIRSTCIYGGAPKG--------PQIR-----DLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGF 191 (448)
Q Consensus 125 ~~~~~~~~~~~~~~~~~--------~~~~-----~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~ 191 (448)
. .+++..+++..+.. ..+. .......|+|+|++.|.-. . ....-..++++|+||.|++-+..
T Consensus 279 p--~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~-~-d~l~~~~W~y~ILDEGH~IrNpn- 353 (923)
T KOG0387|consen 279 P--PFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ-G-DDLLGILWDYVILDEGHRIRNPN- 353 (923)
T ss_pred c--ceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc-C-cccccccccEEEecCcccccCCc-
Confidence 5 46777777755420 1111 1123467999998877321 1 12233457899999999987754
Q ss_pred HHHHHHHHHHcCCCcceEEEeccCchH-HHHHH-----------------------------------------------
Q 013176 192 EPQIRKIVTQIRPDRQTLYWSATWPRE-VETLA----------------------------------------------- 223 (448)
Q Consensus 192 ~~~~~~~~~~~~~~~~~v~~SAT~~~~-~~~~~----------------------------------------------- 223 (448)
..+...+..+ +..+.+.+|+|+-.+ +.++.
T Consensus 354 -s~islackki-~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~ 431 (923)
T KOG0387|consen 354 -SKISLACKKI-RTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVA 431 (923)
T ss_pred -cHHHHHHHhc-cccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHH
Confidence 3344444445 345567778886321 10000
Q ss_pred -----H-----H--------HcCCCeE-EEeCCcc----------------------------------c--ccccCcce
Q 013176 224 -----R-----Q--------FLRNPYK-VIIGSLE----------------------------------L--KANQSINQ 248 (448)
Q Consensus 224 -----~-----~--------~~~~~~~-~~~~~~~----------------------------------~--~~~~~~~~ 248 (448)
. + .+..... +...... . .-+..+..
T Consensus 432 Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll~~ 511 (923)
T KOG0387|consen 432 LRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLLDR 511 (923)
T ss_pred HHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCcccccC
Confidence 0 0 0000000 0000000 0 00000000
Q ss_pred ---EE-------EEecchhHHHHHHHHHHhhh-cCCcEEEEecchhHHHHHHHHHH-hCCCCeEEEcCCCCHHHHHHHHH
Q 013176 249 ---VV-------EVVTEAEKYNRLIKLLKEVM-DGSRILIFTETKKGCDQVTRQLR-MDGWPALSIHGDKNQSERDWVLA 316 (448)
Q Consensus 249 ---~~-------~~~~~~~~~~~l~~~l~~~~-~~~k~lVf~~~~~~~~~l~~~L~-~~~~~~~~~~~~~~~~~r~~~~~ 316 (448)
.. .......|+..+..+++... .+.++|+|..++.....+...|. ..++....+.|..+...|..+++
T Consensus 512 ~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd 591 (923)
T KOG0387|consen 512 RDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVD 591 (923)
T ss_pred cccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHH
Confidence 00 11112336666776666444 46799999999999999999998 57899999999999999999999
Q ss_pred HHhcCCC-C-EEEEeccccCCCCCCCccEEEEcCCCCChhhhhhcccccCCCCCCceEEEE
Q 013176 317 EFRSGRS-P-IMTATDVAARGLDVKDIKCVVNYDFPTSLEDYVHRIGRTGRAGARGTAFTF 375 (448)
Q Consensus 317 ~f~~g~~-~-vLv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~ 375 (448)
+|++++. . +|++|.+.+-|+|+-.++.||+|||.|+|.+-.|+.-|+.|.|+...++++
T Consensus 592 ~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VY 652 (923)
T KOG0387|consen 592 RFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVY 652 (923)
T ss_pred hhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEE
Confidence 9997653 3 567889999999999999999999999999999999999999998877555
No 119
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.89 E-value=8.9e-22 Score=192.02 Aligned_cols=161 Identities=18% Similarity=0.211 Sum_probs=119.1
Q ss_pred CCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhc
Q 013176 46 GFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGS 125 (448)
Q Consensus 46 ~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~ 125 (448)
+| .|..||++.+..+-.+++.+|+|||.+|||++--.++=+.+... +...+|++.|+++|+.|....+....+
T Consensus 509 dF-~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLRes------D~~VVIyvaPtKaLVnQvsa~VyaRF~ 581 (1330)
T KOG0949|consen 509 DF-CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRES------DSDVVIYVAPTKALVNQVSANVYARFD 581 (1330)
T ss_pred cc-CCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhhc------CCCEEEEecchHHHhhhhhHHHHHhhc
Confidence 46 79999999999999999999999999999987666555554443 477899999999999999988876442
Q ss_pred -CCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHc---cccCCCCccEEEEecccccccCCCHHHHHHHHHH
Q 013176 126 -RAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEA---QHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQ 201 (448)
Q Consensus 126 -~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~---~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~ 201 (448)
..-.+.+.+.|....+.... .-+|.|+|+-|+.+-..+.. ......++.++|+||+|.+.+..-...+..++..
T Consensus 582 ~~t~~rg~sl~g~ltqEYsin--p~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~l 659 (1330)
T KOG0949|consen 582 TKTFLRGVSLLGDLTQEYSIN--PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLL 659 (1330)
T ss_pred cCccccchhhHhhhhHHhcCC--chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHh
Confidence 22223333444332222222 23689999999999888776 3446788999999999998876545555555544
Q ss_pred cCCCcceEEEeccCch
Q 013176 202 IRPDRQTLYWSATWPR 217 (448)
Q Consensus 202 ~~~~~~~v~~SAT~~~ 217 (448)
..+.++++|||+.+
T Consensus 660 --i~CP~L~LSATigN 673 (1330)
T KOG0949|consen 660 --IPCPFLVLSATIGN 673 (1330)
T ss_pred --cCCCeeEEecccCC
Confidence 35789999999854
No 120
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.89 E-value=3.4e-20 Score=190.30 Aligned_cols=330 Identities=20% Similarity=0.223 Sum_probs=205.5
Q ss_pred CCCCCCcHHHHhHHHHhh----cCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHH-HH
Q 013176 45 LGFVEPTPIQAQGWPMAL----KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQ-EE 119 (448)
Q Consensus 45 ~~~~~~~~~Q~~~i~~~~----~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~-~~ 119 (448)
-|| ++|+-|.+....+. .+..+++.|+||+|||++|++|++... .+.+++|++||++|++|+. +.
T Consensus 242 ~~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~---------~~~~vvI~t~T~~Lq~Ql~~~~ 311 (820)
T PRK07246 242 LGL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS---------DQRQIIVSVPTKILQDQIMAEE 311 (820)
T ss_pred CCC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc---------CCCcEEEEeCcHHHHHHHHHHH
Confidence 467 89999998655544 456788999999999999999988753 1457999999999999994 66
Q ss_pred HHHhhcCCCceEEEEEcCCCch-----------------------------------------------HhHH-------
Q 013176 120 ALKFGSRAGIRSTCIYGGAPKG-----------------------------------------------PQIR------- 145 (448)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------------~~~~------- 145 (448)
+..+....++++..+.|+...- ..|.
T Consensus 312 i~~l~~~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~ 391 (820)
T PRK07246 312 VKAIQEVFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGN 391 (820)
T ss_pred HHHHHHhcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCC
Confidence 7777666666666655532210 0011
Q ss_pred -----------------HHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCC-----CH-------HH--
Q 013176 146 -----------------DLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMG-----FE-------PQ-- 194 (448)
Q Consensus 146 -----------------~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~-----~~-------~~-- 194 (448)
+-...++|+|+++..|+..+.... .+...+++||||||++.+.. .. ..
T Consensus 392 ~~~~cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~-~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~~~l~ 470 (820)
T PRK07246 392 LSQSSLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK-DFARNKVLVFDEAQKLMLQLEQLSRHQLNITSFLQTIQ 470 (820)
T ss_pred CCCCCCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc-CCCCCCEEEEECcchhHHHHHHHhcceecHHHHHHHHH
Confidence 111347899999998887664432 35678999999999865311 00 00
Q ss_pred -----------------------------------------HHH-------H--------HHH-----------------
Q 013176 195 -----------------------------------------IRK-------I--------VTQ----------------- 201 (448)
Q Consensus 195 -----------------------------------------~~~-------~--------~~~----------------- 201 (448)
+.. + ...
T Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~~~~~ 550 (820)
T PRK07246 471 KALSGPLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESEKQSE 550 (820)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCCCC
Confidence 000 0 000
Q ss_pred -------------------cCCCcceEEEeccCc--hHHHHHHHHHcCCCeEEEeCCcccccccCcceEEE-Eec-----
Q 013176 202 -------------------IRPDRQTLYWSATWP--REVETLARQFLRNPYKVIIGSLELKANQSINQVVE-VVT----- 254 (448)
Q Consensus 202 -------------------~~~~~~~v~~SAT~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----- 254 (448)
++....+|++|||++ +.. .+...+..+.......... .......+.. ..+
T Consensus 551 ~~~~~l~~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f-~~~~~lGl~~~~~~~~~~~--~~~~~~~~i~~~~p~~~~~ 627 (820)
T PRK07246 551 KRVTYLNSASKAFTHFSQLLPETCKTYFVSATLQISPRV-SLADLLGFEEYLFHKIEKD--KKQDQLVVVDQDMPLVTET 627 (820)
T ss_pred cceeEEEeeeCcHHHHHHHHhcCCeEEEEecccccCCCC-cHHHHcCCCccceecCCCC--hHHccEEEeCCCCCCCCCC
Confidence 001135678888885 232 2433333221111111000 0000000100 011
Q ss_pred -chhHHHHHHHHHHhhh-cCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccc
Q 013176 255 -EAEKYNRLIKLLKEVM-DGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVA 332 (448)
Q Consensus 255 -~~~~~~~l~~~l~~~~-~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~ 332 (448)
.+...+.+.+.+.... .+++++|++++.+..+.+++.|.....++ ...+... .+..++++|++++-.||++|+.+
T Consensus 628 ~~~~~~~~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sF 704 (820)
T PRK07246 628 SDEVYAEEIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSF 704 (820)
T ss_pred ChHHHHHHHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchh
Confidence 1223334444443322 36789999999999999999997654444 4445322 24568999999888899999999
Q ss_pred cCCCCCCC--ccEEEEcCCCC-C-----------------------------hhhhhhcccccCCCCCCceEEEEecCC-
Q 013176 333 ARGLDVKD--IKCVVNYDFPT-S-----------------------------LEDYVHRIGRTGRAGARGTAFTFFTHS- 379 (448)
Q Consensus 333 ~~Gidi~~--~~~Vi~~~~p~-s-----------------------------~~~~~Q~~GR~~R~g~~g~~~~~~~~~- 379 (448)
++|||+|+ ...||+..+|. + ...+.|.+||..|...+..+++++++.
T Consensus 705 wEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD~R~ 784 (820)
T PRK07246 705 WEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILDRRI 784 (820)
T ss_pred hCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEECCcc
Confidence 99999973 55677777663 1 224779999999997766677777765
Q ss_pred -ChHHHHHHHHHH
Q 013176 380 -NAKFARDLIKIL 391 (448)
Q Consensus 380 -~~~~~~~l~~~~ 391 (448)
.+.+-+.+.+.+
T Consensus 785 ~~k~Yg~~~l~sL 797 (820)
T PRK07246 785 LTKSYGKQILASL 797 (820)
T ss_pred cccHHHHHHHHhC
Confidence 445556665554
No 121
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.88 E-value=6.7e-21 Score=179.13 Aligned_cols=307 Identities=21% Similarity=0.283 Sum_probs=208.2
Q ss_pred CcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHH-HhhcCCC
Q 013176 50 PTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEAL-KFGSRAG 128 (448)
Q Consensus 50 ~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~-~~~~~~~ 128 (448)
.+++-.+.+.++..++-++|.+.||||||.. +|-.-+ .. .-...+.++-+..|++.-|..++.+.. +++..++
T Consensus 266 Vy~ykdell~av~e~QVLiI~GeTGSGKTTQ--iPQyL~--Ea--Gytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG 339 (902)
T KOG0923|consen 266 VYPYKDELLKAVKEHQVLIIVGETGSGKTTQ--IPQYLY--EA--GYTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLG 339 (902)
T ss_pred chhhHHHHHHHHHhCcEEEEEcCCCCCcccc--ccHHHH--hc--ccccCCceEeecCcchHHHHHHHHHHHHHhCcccc
Confidence 3677788899999999999999999999974 332222 11 111235568999999988888877765 4444443
Q ss_pred ceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccc-cCC-CHHHHHHHHHHcCCCc
Q 013176 129 IRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRML-DMG-FEPQIRKIVTQIRPDR 206 (448)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~-~~~-~~~~~~~~~~~~~~~~ 206 (448)
..|.+..--. .......-+-+.|.++|++-+.. ..++.++++|||||||.-. ... ....+.. +..++++.
T Consensus 340 ~eVGYsIRFE------dcTSekTvlKYMTDGmLlREfL~-epdLasYSViiiDEAHERTL~TDILfgLvKD-Iar~RpdL 411 (902)
T KOG0923|consen 340 HEVGYSIRFE------DCTSEKTVLKYMTDGMLLREFLS-EPDLASYSVIIVDEAHERTLHTDILFGLVKD-IARFRPDL 411 (902)
T ss_pred cccceEEEec------cccCcceeeeeecchhHHHHHhc-cccccceeEEEeehhhhhhhhhhHHHHHHHH-HHhhCCcc
Confidence 3332211000 00111223569999999876654 4568889999999999521 111 1112222 33456899
Q ss_pred ceEEEeccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceEEEEecchhHHHHHHHHHHhhh---cCCcEEEEecchh
Q 013176 207 QTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKEVM---DGSRILIFTETKK 283 (448)
Q Consensus 207 ~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~k~lVf~~~~~ 283 (448)
+++.+|||+.. +.+...+-.-|+. .++ ..+-.+...+...++.+.++....-+.++. +.+-+|||..-.+
T Consensus 412 KllIsSAT~DA--ekFS~fFDdapIF-~iP----GRRyPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQe 484 (902)
T KOG0923|consen 412 KLLISSATMDA--EKFSAFFDDAPIF-RIP----GRRYPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQE 484 (902)
T ss_pred eEEeeccccCH--HHHHHhccCCcEE-ecc----CcccceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHH
Confidence 99999999864 3454443333333 222 122233444555566676666554443322 3467999999999
Q ss_pred HHHHHHHHHHhC---------CCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCCCccEEEEcCC-----
Q 013176 284 GCDQVTRQLRMD---------GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVKDIKCVVNYDF----- 349 (448)
Q Consensus 284 ~~~~l~~~L~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~Vi~~~~----- 349 (448)
..+...+.|++. .+-+..+|+.++.+.+.++++---.|..+|++||+++++.+.|+++..||.-+.
T Consensus 485 EIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~ns 564 (902)
T KOG0923|consen 485 EIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNS 564 (902)
T ss_pred HHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccC
Confidence 888877777543 233678899999999999988888889999999999999999999999996653
Q ss_pred -------------CCChhhhhhcccccCCCCCCceEEEEecC
Q 013176 350 -------------PTSLEDYVHRIGRTGRAGARGTAFTFFTH 378 (448)
Q Consensus 350 -------------p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~ 378 (448)
|-|-++-.||+||+||.| +|+|+-+++.
T Consensus 565 ynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~ 605 (902)
T KOG0923|consen 565 YNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTA 605 (902)
T ss_pred cCCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeech
Confidence 336667889999999995 8999999983
No 122
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.88 E-value=3.3e-20 Score=182.24 Aligned_cols=322 Identities=17% Similarity=0.208 Sum_probs=205.7
Q ss_pred CCcHHHHhHHHHhhcC----------CcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHH
Q 013176 49 EPTPIQAQGWPMALKG----------RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQE 118 (448)
Q Consensus 49 ~~~~~Q~~~i~~~~~~----------~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~ 118 (448)
.++|+|++.+.-+.+. ...++.-.+|+|||+..+..++..+.+.+...+ ...+.||++| ..|+..|.+
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~-~~~k~lVV~P-~sLv~nWkk 315 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKP-LINKPLVVAP-SSLVNNWKK 315 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccc-cccccEEEcc-HHHHHHHHH
Confidence 6899999999876642 257788899999999866555555555443222 3467899999 789999999
Q ss_pred HHHHhhcCCCceEEEEEcCCCch----HhHHHH---hcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCCC
Q 013176 119 EALKFGSRAGIRSTCIYGGAPKG----PQIRDL---RRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGF 191 (448)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~---~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~ 191 (448)
++.+|.....+....+++..... ..+..+ .-...|++.+++.+.+.... .....++++|+||.|++-+..
T Consensus 316 EF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~--il~~~~glLVcDEGHrlkN~~- 392 (776)
T KOG0390|consen 316 EFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK--ILLIRPGLLVCDEGHRLKNSD- 392 (776)
T ss_pred HHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH--HhcCCCCeEEECCCCCccchh-
Confidence 99999775566777777766540 001111 11246888999888765543 345668999999999875532
Q ss_pred HHHHHHHHHHcCCCcceEEEeccCch-HHHHH------------------------------------------------
Q 013176 192 EPQIRKIVTQIRPDRQTLYWSATWPR-EVETL------------------------------------------------ 222 (448)
Q Consensus 192 ~~~~~~~~~~~~~~~~~v~~SAT~~~-~~~~~------------------------------------------------ 222 (448)
..+...+..+ ...+.|++|+|+-. ++.++
T Consensus 393 -s~~~kaL~~l-~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~eL 470 (776)
T KOG0390|consen 393 -SLTLKALSSL-KTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERLQEL 470 (776)
T ss_pred -hHHHHHHHhc-CCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHHHHH
Confidence 2333344444 45566888999632 11110
Q ss_pred ---HHHHcCC------------CeEEEeC--Cccc---------------------------------------------
Q 013176 223 ---ARQFLRN------------PYKVIIG--SLEL--------------------------------------------- 240 (448)
Q Consensus 223 ---~~~~~~~------------~~~~~~~--~~~~--------------------------------------------- 240 (448)
...++.. -....+. ....
T Consensus 471 ~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~~~~~~~ 550 (776)
T KOG0390|consen 471 RELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLLLCEKTE 550 (776)
T ss_pred HHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhccccccc
Confidence 0000000 0000000 0000
Q ss_pred c-----------cccCcceEEEEecchhHHHHHHHHHHhhhc--CCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCC
Q 013176 241 K-----------ANQSINQVVEVVTEAEKYNRLIKLLKEVMD--GSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKN 307 (448)
Q Consensus 241 ~-----------~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 307 (448)
. .....+..........++..|..++....+ ..++.+..|-....+.+....+..|+.+..++|.++
T Consensus 551 ~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~ 630 (776)
T KOG0390|consen 551 KEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTS 630 (776)
T ss_pred ccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCc
Confidence 0 000000000001112345555555533222 224444445555555555556667999999999999
Q ss_pred HHHHHHHHHHHhcCCC--CE-EEEeccccCCCCCCCccEEEEcCCCCChhhhhhcccccCCCCCCceEEEEec
Q 013176 308 QSERDWVLAEFRSGRS--PI-MTATDVAARGLDVKDIKCVVNYDFPTSLEDYVHRIGRTGRAGARGTAFTFFT 377 (448)
Q Consensus 308 ~~~r~~~~~~f~~g~~--~v-Lv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~ 377 (448)
..+|+.+++.|++..- .| |..|.+.++||++-+.+.||.+|++|+|+.-.|++.|+.|.||+..|+++-.
T Consensus 631 ~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrL 703 (776)
T KOG0390|consen 631 IKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRL 703 (776)
T ss_pred hHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEe
Confidence 9999999999986432 44 5566888999999999999999999999999999999999999999976643
No 123
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.87 E-value=1e-19 Score=179.43 Aligned_cols=321 Identities=22% Similarity=0.252 Sum_probs=218.4
Q ss_pred HCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013176 44 KLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (448)
Q Consensus 44 ~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~ 123 (448)
.+|+ .|++.|.-..-.+..| -+..+.||-|||+++.+|+.-.... +..|-|++.+.-||..-++++..+
T Consensus 74 ~lG~-r~ydVQliGglvLh~G--~IAEMkTGEGKTLvAtLpayLnAL~--------GkgVhVVTvNdYLA~RDae~mg~v 142 (925)
T PRK12903 74 VLGK-RPYDVQIIGGIILDLG--SVAEMKTGEGKTITSIAPVYLNALT--------GKGVIVSTVNEYLAERDAEEMGKV 142 (925)
T ss_pred HhCC-CcCchHHHHHHHHhcC--CeeeecCCCCccHHHHHHHHHHHhc--------CCceEEEecchhhhhhhHHHHHHH
Confidence 3677 7888887666555544 6789999999999999988765554 556888899999999999999999
Q ss_pred hcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHH-HHHHHccc------cCCCCccEEEEecccccccCC------
Q 013176 124 GSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRL-IDMLEAQH------TNLRRVTYLVLDEADRMLDMG------ 190 (448)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~~~~~~------~~~~~~~~iIvDE~h~~~~~~------ 190 (448)
...+|++|.++..+.+..+....+ .+||+++|...| ++++.... ...+.+.+.||||+|.++-..
T Consensus 143 y~fLGLsvG~i~~~~~~~~rr~aY--~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPLI 220 (925)
T PRK12903 143 FNFLGLSVGINKANMDPNLKREAY--ACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLI 220 (925)
T ss_pred HHHhCCceeeeCCCCChHHHHHhc--cCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCccc
Confidence 999999999888766554443333 589999998776 34444321 124668899999999754100
Q ss_pred ----------CHHHHHHHHHHcCC--------------------------------------------------------
Q 013176 191 ----------FEPQIRKIVTQIRP-------------------------------------------------------- 204 (448)
Q Consensus 191 ----------~~~~~~~~~~~~~~-------------------------------------------------------- 204 (448)
....+..+...+..
T Consensus 221 ISg~~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd 300 (925)
T PRK12903 221 ISGGQSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKED 300 (925)
T ss_pred ccCCCccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcC
Confidence 00011111111100
Q ss_pred ------------------------------------------------------------CcceEEEeccCchHHHHHHH
Q 013176 205 ------------------------------------------------------------DRQTLYWSATWPREVETLAR 224 (448)
Q Consensus 205 ------------------------------------------------------------~~~~v~~SAT~~~~~~~~~~ 224 (448)
..++.+||+|.......+..
T Consensus 301 ~dYiV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~~ 380 (925)
T PRK12903 301 VEYIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFID 380 (925)
T ss_pred CceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHH
Confidence 01445666665444434333
Q ss_pred HHcCCCeEEEeCCcccccccCcceEEEEecchhHHHHHHHHHHhh-hcCCcEEEEecchhHHHHHHHHHHhCCCCeEEEc
Q 013176 225 QFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKEV-MDGSRILIFTETKKGCDQVTRQLRMDGWPALSIH 303 (448)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~ 303 (448)
.++-.+.. ++...+..+.... ...+.....|+..+.+.+.+. ..+.++||.|.+++..+.+++.|++.+++..+++
T Consensus 381 -iY~l~Vv~-IPTnkP~~R~D~~-d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLN 457 (925)
T PRK12903 381 -IYNMRVNV-VPTNKPVIRKDEP-DSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLN 457 (925)
T ss_pred -HhCCCEEE-CCCCCCeeeeeCC-CcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeec
Confidence 22222221 1211111111111 123345667787877766654 4688999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhcC-CCCEEEEeccccCCCCCCCcc--------EEEEcCCCCChhhhhhcccccCCCCCCceEEE
Q 013176 304 GDKNQSERDWVLAEFRSG-RSPIMTATDVAARGLDVKDIK--------CVVNYDFPTSLEDYVHRIGRTGRAGARGTAFT 374 (448)
Q Consensus 304 ~~~~~~~r~~~~~~f~~g-~~~vLv~T~~~~~Gidi~~~~--------~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~ 374 (448)
+.....+-. ++. +.| ...|.|||+++++|.||.--. +||....|.|..--.|..||+||.|.+|.+..
T Consensus 458 Ak~~e~EA~-IIa--~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f 534 (925)
T PRK12903 458 AKQNAREAE-IIA--KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRF 534 (925)
T ss_pred ccchhhHHH-HHH--hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceE
Confidence 874433322 332 345 346999999999999996221 89999999999889999999999999999998
Q ss_pred EecCCChHH
Q 013176 375 FFTHSNAKF 383 (448)
Q Consensus 375 ~~~~~~~~~ 383 (448)
|++-.|.-+
T Consensus 535 ~lSLeD~L~ 543 (925)
T PRK12903 535 FISLDDQLF 543 (925)
T ss_pred EEecchHHH
Confidence 888766543
No 124
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.87 E-value=2.1e-19 Score=180.75 Aligned_cols=147 Identities=20% Similarity=0.343 Sum_probs=123.1
Q ss_pred chhHHHHHHHHHHhhh-cCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEecccc
Q 013176 255 EAEKYNRLIKLLKEVM-DGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAA 333 (448)
Q Consensus 255 ~~~~~~~l~~~l~~~~-~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~ 333 (448)
...++..+.+.+.... .+.+++|||+++..++.+++.|.+.++++..+|++++..+|..+++.|+.|++.|+|||+.++
T Consensus 428 ~~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~ 507 (652)
T PRK05298 428 TKGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLR 507 (652)
T ss_pred ccccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHh
Confidence 3445666666666544 467999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccEEEEcCC-----CCChhhhhhcccccCCCCCCceEEEEecCC---------ChHHHHHHHHHHHHhCCCCc
Q 013176 334 RGLDVKDIKCVVNYDF-----PTSLEDYVHRIGRTGRAGARGTAFTFFTHS---------NAKFARDLIKILQEAGQIVS 399 (448)
Q Consensus 334 ~Gidi~~~~~Vi~~~~-----p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~ 399 (448)
+|+|+|++++||++|. |.+..+|+||+||+||. ..|.++++++.. +....+++..........++
T Consensus 508 rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 586 (652)
T PRK05298 508 EGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITP 586 (652)
T ss_pred CCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCC
Confidence 9999999999999885 67999999999999996 789999999853 44444555555555555555
Q ss_pred HHH
Q 013176 400 PAL 402 (448)
Q Consensus 400 ~~l 402 (448)
..+
T Consensus 587 ~~~ 589 (652)
T PRK05298 587 KTI 589 (652)
T ss_pred hhH
Confidence 554
No 125
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.87 E-value=4.2e-20 Score=184.60 Aligned_cols=316 Identities=20% Similarity=0.226 Sum_probs=216.2
Q ss_pred CcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHH-hhcCCC
Q 013176 50 PTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALK-FGSRAG 128 (448)
Q Consensus 50 ~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~-~~~~~~ 128 (448)
.+..+.+.+.++.+++.+++.+.||+|||.-.--.++..+.... ...++++--|++--|..+++++.. .+...+
T Consensus 174 a~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~-----~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g 248 (924)
T KOG0920|consen 174 AYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG-----AACNIICTQPRRISAISVAERVAKERGESLG 248 (924)
T ss_pred cHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC-----CCCeEEecCCchHHHHHHHHHHHHHhccccC
Confidence 37788899999999999999999999999875555555554433 366799999999888888877753 333334
Q ss_pred ceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccC-CCHHHHHHHHHHcCCCcc
Q 013176 129 IRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDM-GFEPQIRKIVTQIRPDRQ 207 (448)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~-~~~~~~~~~~~~~~~~~~ 207 (448)
-.|..-..-.+. ......+++||.+.|++.+.. ...+..+..||+||+|.-.-. .|.-.+.+.+-...++.+
T Consensus 249 ~~VGYqvrl~~~------~s~~t~L~fcTtGvLLr~L~~-~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~Lk 321 (924)
T KOG0920|consen 249 EEVGYQVRLESK------RSRETRLLFCTTGVLLRRLQS-DPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLK 321 (924)
T ss_pred CeeeEEEeeecc------cCCceeEEEecHHHHHHHhcc-CcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCce
Confidence 333222211111 112356999999999998887 556788999999999964332 244344444444458999
Q ss_pred eEEEeccCchHHHHHHHHHcCCCeEEEeCCcccccccC--------------cceE------------EEE---ecchhH
Q 013176 208 TLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQS--------------INQV------------VEV---VTEAEK 258 (448)
Q Consensus 208 ~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~------------~~~---~~~~~~ 258 (448)
+++||||+.. +.+...+.+.|............... .... ... .-+.+-
T Consensus 322 vILMSAT~da--e~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~L 399 (924)
T KOG0920|consen 322 VILMSATLDA--ELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDL 399 (924)
T ss_pred EEEeeeecch--HHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHHH
Confidence 9999999863 34444444433333221111000000 0000 000 011223
Q ss_pred HHHHHHHHHhhhcCCcEEEEecchhHHHHHHHHHHhC-------CCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEecc
Q 013176 259 YNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMD-------GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDV 331 (448)
Q Consensus 259 ~~~l~~~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~-------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~ 331 (448)
+..+...+.+....+.+|||.+...++..+.+.|... .+-+..+|+.++..++..+...--.|..+|+++|++
T Consensus 400 i~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNI 479 (924)
T KOG0920|consen 400 IEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNI 479 (924)
T ss_pred HHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhh
Confidence 3334444444444678999999999999999999753 244678899999999999998888899999999999
Q ss_pred ccCCCCCCCccEEEEcCCC--------C----------ChhhhhhcccccCCCCCCceEEEEecCCC
Q 013176 332 AARGLDVKDIKCVVNYDFP--------T----------SLEDYVHRIGRTGRAGARGTAFTFFTHSN 380 (448)
Q Consensus 332 ~~~Gidi~~~~~Vi~~~~p--------~----------s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~ 380 (448)
++..|.|+++-+||..+.- . |-+.-.||.||+||. ++|.|+-+++...
T Consensus 480 AETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~~ 545 (924)
T KOG0920|consen 480 AETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRSR 545 (924)
T ss_pred HhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechhh
Confidence 9999999999999965531 1 556678999999999 8999999998653
No 126
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.87 E-value=2.1e-20 Score=162.60 Aligned_cols=184 Identities=43% Similarity=0.649 Sum_probs=148.9
Q ss_pred CCCCCCcHHHHhHHHHhhcC-CcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013176 45 LGFVEPTPIQAQGWPMALKG-RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (448)
Q Consensus 45 ~~~~~~~~~Q~~~i~~~~~~-~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~ 123 (448)
.++..++++|.++++.+... +++++.++||+|||.++..+++..+.... ..+++|++|+..++.|+...+..+
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~------~~~~l~~~p~~~~~~~~~~~~~~~ 77 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK------GKRVLVLVPTRELAEQWAEELKKL 77 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC------CCcEEEEeCCHHHHHHHHHHHHHH
Confidence 45668999999999999988 89999999999999988888888766531 457999999999999999999987
Q ss_pred hcCCCceEEEEEcCCCchHhHHHHhcCC-cEEEEccHHHHHHHHccccCCCCccEEEEecccccccCCCHHHHHHHHHHc
Q 013176 124 GSRAGIRSTCIYGGAPKGPQIRDLRRGV-EIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQI 202 (448)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~ 202 (448)
............++.............. +++++|++.+.+...........++++|+||+|.+....+...+..+...+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~ 157 (201)
T smart00487 78 GPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLL 157 (201)
T ss_pred hccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhC
Confidence 7654434444555554445555555555 999999999999888776667788999999999988756778888888888
Q ss_pred CCCcceEEEeccCchHHHHHHHHHcCCCeEEE
Q 013176 203 RPDRQTLYWSATWPREVETLARQFLRNPYKVI 234 (448)
Q Consensus 203 ~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~ 234 (448)
.+..+++++|||++.+.......++.....+.
T Consensus 158 ~~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~ 189 (201)
T smart00487 158 PKNVQLLLLSATPPEEIENLLELFLNDPVFID 189 (201)
T ss_pred CccceEEEEecCCchhHHHHHHHhcCCCEEEe
Confidence 78899999999999888888887777554444
No 127
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.86 E-value=6.4e-20 Score=182.88 Aligned_cols=320 Identities=19% Similarity=0.221 Sum_probs=210.0
Q ss_pred CCcHHHHhHHHHhh---cC-CcEEEEcCCCChHHHHHHHHHHHHhhcC-CCccCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013176 49 EPTPIQAQGWPMAL---KG-RDLIGIAETGSGKTLSYLLPAFVHVSAQ-PRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (448)
Q Consensus 49 ~~~~~Q~~~i~~~~---~~-~~~lv~~~tGsGKT~~~~l~~l~~~~~~-~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~ 123 (448)
.+|.||++-+..+. +. -+-|++..+|-|||+..+..+......+ ..-.+-....+||+|| ..|+.-|..++.+|
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCP-sTLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCP-STLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECC-chhhhHHHHHHHHh
Confidence 57999999887643 22 3679999999999998665444333332 1222222444899999 57999999999999
Q ss_pred hcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCCCHHHHHHHHHHcC
Q 013176 124 GSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIR 203 (448)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~ 203 (448)
... +++....|........+.-.++++|+|++++.+-+-+.. +.-..+.|.|+||-|-+-+. ...+.+..+.+.
T Consensus 1054 ~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~--l~~~~wNYcVLDEGHVikN~--ktkl~kavkqL~ 1127 (1549)
T KOG0392|consen 1054 FPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY--LIKIDWNYCVLDEGHVIKNS--KTKLTKAVKQLR 1127 (1549)
T ss_pred cch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH--HHhcccceEEecCcceecch--HHHHHHHHHHHh
Confidence 876 566666665544444455556689999999888533221 22335789999999987653 344455555554
Q ss_pred CCcceEEEeccCchH-HHH------------------HHHH---------------------------------------
Q 013176 204 PDRQTLYWSATWPRE-VET------------------LARQ--------------------------------------- 225 (448)
Q Consensus 204 ~~~~~v~~SAT~~~~-~~~------------------~~~~--------------------------------------- 225 (448)
.+ +.+.+|+|+..+ +.+ +..+
T Consensus 1128 a~-hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LRR 1206 (1549)
T KOG0392|consen 1128 AN-HRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLRR 1206 (1549)
T ss_pred hc-ceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHHH
Confidence 43 446789996321 000 0000
Q ss_pred ----HcCC-C-----------------------------eEEEeCCcccccccC-------cc-------eE-EEE----
Q 013176 226 ----FLRN-P-----------------------------YKVIIGSLELKANQS-------IN-------QV-VEV---- 252 (448)
Q Consensus 226 ----~~~~-~-----------------------------~~~~~~~~~~~~~~~-------~~-------~~-~~~---- 252 (448)
.+.+ | ....+.......... +. +. ...
T Consensus 1207 lKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~h 1286 (1549)
T KOG0392|consen 1207 LKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTPVH 1286 (1549)
T ss_pred HHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeCCCc
Confidence 0000 0 000000000000000 00 00 000
Q ss_pred -------------------ecchhHHHHHHHHHHhhh---------------cCCcEEEEecchhHHHHHHHHHHhCCC-
Q 013176 253 -------------------VTEAEKYNRLIKLLKEVM---------------DGSRILIFTETKKGCDQVTRQLRMDGW- 297 (448)
Q Consensus 253 -------------------~~~~~~~~~l~~~l~~~~---------------~~~k~lVf~~~~~~~~~l~~~L~~~~~- 297 (448)
.....|+.+|.+++.+.- .+.++||||.-+..+..+.+-|.+...
T Consensus 1287 p~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mp 1366 (1549)
T KOG0392|consen 1287 PDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMP 1366 (1549)
T ss_pred chHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcC
Confidence 012235556666665433 235899999999999999988866533
Q ss_pred --CeEEEcCCCCHHHHHHHHHHHhcC-CCCEEE-EeccccCCCCCCCccEEEEcCCCCChhhhhhcccccCCCCCCceEE
Q 013176 298 --PALSIHGDKNQSERDWVLAEFRSG-RSPIMT-ATDVAARGLDVKDIKCVVNYDFPTSLEDYVHRIGRTGRAGARGTAF 373 (448)
Q Consensus 298 --~~~~~~~~~~~~~r~~~~~~f~~g-~~~vLv-~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~ 373 (448)
....+.|+.++.+|.++.++|+++ .++||+ +|.+.+-|+|+.+.++||+++-.|+|-.-+|+.-||.|.|++..+.
T Consensus 1367 sVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVN 1446 (1549)
T KOG0392|consen 1367 SVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVN 1446 (1549)
T ss_pred ceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeee
Confidence 344789999999999999999988 688766 6699999999999999999999999999999999999999998885
Q ss_pred EEe
Q 013176 374 TFF 376 (448)
Q Consensus 374 ~~~ 376 (448)
++-
T Consensus 1447 VyR 1449 (1549)
T KOG0392|consen 1447 VYR 1449 (1549)
T ss_pred eee
Confidence 553
No 128
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.86 E-value=6e-19 Score=184.50 Aligned_cols=133 Identities=12% Similarity=0.223 Sum_probs=96.5
Q ss_pred HHHHHHHHHhhh--cCCcEEEEecchhHHHHHHHHHHhCCC--CeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccC
Q 013176 259 YNRLIKLLKEVM--DGSRILIFTETKKGCDQVTRQLRMDGW--PALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAAR 334 (448)
Q Consensus 259 ~~~l~~~l~~~~--~~~k~lVf~~~~~~~~~l~~~L~~~~~--~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~ 334 (448)
...+.+.+.+.. .++++||++++.+..+.+++.|+.... ...++.-+++...|.++++.|+.++-.||++|..+++
T Consensus 737 ~~~la~~i~~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwE 816 (928)
T PRK08074 737 IEEVAAYIAKIAKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWE 816 (928)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccC
Confidence 345555554433 356899999999999999999976422 1223333444345788999999888889999999999
Q ss_pred CCCCCC--ccEEEEcCCCC-Ch-----------------------------hhhhhcccccCCCCCCceEEEEecCC--C
Q 013176 335 GLDVKD--IKCVVNYDFPT-SL-----------------------------EDYVHRIGRTGRAGARGTAFTFFTHS--N 380 (448)
Q Consensus 335 Gidi~~--~~~Vi~~~~p~-s~-----------------------------~~~~Q~~GR~~R~g~~g~~~~~~~~~--~ 380 (448)
|||+|+ +++||+..+|. ++ ..+.|.+||..|..++..++++++.. .
T Consensus 817 GVD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R~~~ 896 (928)
T PRK08074 817 GIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRRLTT 896 (928)
T ss_pred ccccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCcccc
Confidence 999996 68899888764 11 23679999999998776677777765 5
Q ss_pred hHHHHHHHHHH
Q 013176 381 AKFARDLIKIL 391 (448)
Q Consensus 381 ~~~~~~l~~~~ 391 (448)
+.+-+.+.+.+
T Consensus 897 k~Yg~~~l~sL 907 (928)
T PRK08074 897 TSYGKYFLESL 907 (928)
T ss_pred chHHHHHHHhC
Confidence 55556665554
No 129
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.86 E-value=1.5e-20 Score=187.90 Aligned_cols=318 Identities=18% Similarity=0.230 Sum_probs=210.6
Q ss_pred CCCcHHHHhHHHHhh----cCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013176 48 VEPTPIQAQGWPMAL----KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (448)
Q Consensus 48 ~~~~~~Q~~~i~~~~----~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~ 123 (448)
.++|.||-+-+..++ .++++|+.-.+|-|||+.. +..+..+..... -..-.||++|...+ ..|.+++..+
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqt-i~fl~~l~~~~~----~~gpflvvvplst~-~~W~~ef~~w 442 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQT-ITFLSYLFHSLQ----IHGPFLVVVPLSTI-TAWEREFETW 442 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHH-HHHHHHHHHhhh----ccCCeEEEeehhhh-HHHHHHHHHH
Confidence 489999998887655 5689999999999999653 333443333211 13347888996554 5677888887
Q ss_pred hcCCCceEEEEEcCCCchHhHHHHh----c-----CCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCCCHHH
Q 013176 124 GSRAGIRSTCIYGGAPKGPQIRDLR----R-----GVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQ 194 (448)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~----~-----~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~ 194 (448)
. .+++++.+|.....+.++.+. . .++++++|++.++.--. .+.--.+.+++|||||++.+.. ..
T Consensus 443 ~---~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~--~L~~i~w~~~~vDeahrLkN~~--~~ 515 (1373)
T KOG0384|consen 443 T---DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKA--ELSKIPWRYLLVDEAHRLKNDE--SK 515 (1373)
T ss_pred h---hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHh--hhccCCcceeeecHHhhcCchH--HH
Confidence 5 688899999887766655442 2 37899999988754211 1222346799999999987643 22
Q ss_pred HHHHHHHcCCCcceEEEeccCch-HHHHHHHHH-cCCCeEEEe--------------------------------CCccc
Q 013176 195 IRKIVTQIRPDRQTLYWSATWPR-EVETLARQF-LRNPYKVII--------------------------------GSLEL 240 (448)
Q Consensus 195 ~~~~~~~~~~~~~~v~~SAT~~~-~~~~~~~~~-~~~~~~~~~--------------------------------~~~~~ 240 (448)
+...+..+ ...+.+++|+||-. ++..+...+ +..|..+.. ...+.
T Consensus 516 l~~~l~~f-~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdvek 594 (1373)
T KOG0384|consen 516 LYESLNQF-KMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVEK 594 (1373)
T ss_pred HHHHHHHh-cccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhcc
Confidence 33334444 34456788998643 222211100 000000000 00000
Q ss_pred ccccCcceEEEE-------------------------------------------------ec-------------chhH
Q 013176 241 KANQSINQVVEV-------------------------------------------------VT-------------EAEK 258 (448)
Q Consensus 241 ~~~~~~~~~~~~-------------------------------------------------~~-------------~~~~ 258 (448)
..+....+++.+ .. ....
T Consensus 595 slp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~ 674 (1373)
T KOG0384|consen 595 SLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEA 674 (1373)
T ss_pred CCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHH
Confidence 000000000000 00 0011
Q ss_pred HHH----------HHHHHHhhh-cCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhc---CCCC
Q 013176 259 YNR----------LIKLLKEVM-DGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRS---GRSP 324 (448)
Q Consensus 259 ~~~----------l~~~l~~~~-~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~---g~~~ 324 (448)
+.. |-.+|-... .|.+||||...+.....|+++|..++++...+.|.+..+-|...++.|.. ....
T Consensus 675 L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFv 754 (1373)
T KOG0384|consen 675 LQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFV 754 (1373)
T ss_pred HHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceE
Confidence 111 112222222 35799999999999999999999999999999999999999999999974 3556
Q ss_pred EEEEeccccCCCCCCCccEEEEcCCCCChhhhhhcccccCCCCCCceE--EEEecCC
Q 013176 325 IMTATDVAARGLDVKDIKCVVNYDFPTSLEDYVHRIGRTGRAGARGTA--FTFFTHS 379 (448)
Q Consensus 325 vLv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~--~~~~~~~ 379 (448)
+|++|.+.+-|||+-.+++||+||..|+|..-+|+..||.|.|+...+ +-|++.+
T Consensus 755 FLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~ 811 (1373)
T KOG0384|consen 755 FLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKN 811 (1373)
T ss_pred EEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCC
Confidence 899999999999999999999999999999999999999999998877 4455554
No 130
>COG4889 Predicted helicase [General function prediction only]
Probab=99.86 E-value=7.6e-21 Score=183.60 Aligned_cols=346 Identities=20% Similarity=0.248 Sum_probs=203.4
Q ss_pred HHHHHCCCCCCcHHHHhHHHHhhcC----CcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHH
Q 013176 40 EVIAKLGFVEPTPIQAQGWPMALKG----RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQ 115 (448)
Q Consensus 40 ~~~~~~~~~~~~~~Q~~~i~~~~~~----~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q 115 (448)
..+.-..-..|||+|+.|+++..++ .+-=+.+.||+|||++.+- +...+. ..++|+|+|+.+|..|
T Consensus 152 ~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLk-isEala---------~~~iL~LvPSIsLLsQ 221 (1518)
T COG4889 152 DNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLK-ISEALA---------AARILFLVPSISLLSQ 221 (1518)
T ss_pred cccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHH-HHHHHh---------hhheEeecchHHHHHH
Confidence 3333334458999999999998865 2334455699999998543 333322 2469999999999999
Q ss_pred HHHHHHHhhcCCCceEEEEEcCCCchH--------------------hHH-----HHhcCCcEEEEccHHHHHHHHcccc
Q 013176 116 IQEEALKFGSRAGIRSTCIYGGAPKGP--------------------QIR-----DLRRGVEIVIATPGRLIDMLEAQHT 170 (448)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~-----~~~~~~~iiv~T~~~l~~~~~~~~~ 170 (448)
..+++..- ....++...++++..... ... +...+--|+++|++++...-+..+.
T Consensus 222 Tlrew~~~-~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~ 300 (1518)
T COG4889 222 TLREWTAQ-KELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQEA 300 (1518)
T ss_pred HHHHHhhc-cCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHHHc
Confidence 87777653 223455555554432110 011 1112456999999999988888888
Q ss_pred CCCCccEEEEecccccccCCCH----HHHHHHHH-HcCCCcceEEEeccCchHHHHH---H-------------------
Q 013176 171 NLRRVTYLVLDEADRMLDMGFE----PQIRKIVT-QIRPDRQTLYWSATWPREVETL---A------------------- 223 (448)
Q Consensus 171 ~~~~~~~iIvDE~h~~~~~~~~----~~~~~~~~-~~~~~~~~v~~SAT~~~~~~~~---~------------------- 223 (448)
-+..+++||.||||+-....+. ..+.++-. ..-+..+.++||||+.-..+.. +
T Consensus 301 G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~~fGee 380 (1518)
T COG4889 301 GLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDELTFGEE 380 (1518)
T ss_pred CCCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccceeeccchhhhhchh
Confidence 8999999999999985432110 11111100 0002345688999973211111 1
Q ss_pred -----------HHHcCCCeEEEeCCcccccccCcceEEEEecchhHHH---HHHH----HHHhhh-------------cC
Q 013176 224 -----------RQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYN---RLIK----LLKEVM-------------DG 272 (448)
Q Consensus 224 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~----~l~~~~-------------~~ 272 (448)
+.++.+.-.+............+..........-..+ .++- +.++.. .-
T Consensus 381 f~rl~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~~~d~ap~ 460 (1518)
T COG4889 381 FHRLGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNIKADTAPM 460 (1518)
T ss_pred hhcccHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccccCCcCCchHH
Confidence 0111111111111111000000000000000000011 1111 111100 01
Q ss_pred CcEEEEecchhHHHHHHHHHHh-----------C--C--CCeEEEcCCCCHHHHHHHHHH---HhcCCCCEEEEeccccC
Q 013176 273 SRILIFTETKKGCDQVTRQLRM-----------D--G--WPALSIHGDKNQSERDWVLAE---FRSGRSPIMTATDVAAR 334 (448)
Q Consensus 273 ~k~lVf~~~~~~~~~l~~~L~~-----------~--~--~~~~~~~~~~~~~~r~~~~~~---f~~g~~~vLv~T~~~~~ 334 (448)
.+.+-||.++++...+++.+.. . + +.+..+.|.|...+|...++. |...+++||--..++.+
T Consensus 461 ~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSE 540 (1518)
T COG4889 461 QRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSE 540 (1518)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhc
Confidence 3678999999888877766632 1 2 234566789999999555443 34567889988899999
Q ss_pred CCCCCCccEEEEcCCCCChhhhhhcccccCCCCCC-ceEEEEec---------------CCChHHHHHHHHHHHHhCC
Q 013176 335 GLDVKDIKCVVNYDFPTSLEDYVHRIGRTGRAGAR-GTAFTFFT---------------HSNAKFARDLIKILQEAGQ 396 (448)
Q Consensus 335 Gidi~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~-g~~~~~~~---------------~~~~~~~~~l~~~~~~~~~ 396 (448)
|||+|.++.||++++-.++.+.+|.+||+-|.... ...++++. ..+.+..+++++.++.+..
T Consensus 541 GVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIILPIalpegi~p~~~l~~n~nFk~VWqVlnALRShD~ 618 (1518)
T COG4889 541 GVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIILPIALPEGIKPLDELVNNTNFKNVWQVLKALRSHDE 618 (1518)
T ss_pred CCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEEEeccCCCCCchHHHhcCccHHHHHHHHHHHHhcCH
Confidence 99999999999999999999999999999997432 22222221 2355677888888888766
No 131
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.85 E-value=4.7e-19 Score=175.77 Aligned_cols=278 Identities=21% Similarity=0.194 Sum_probs=182.1
Q ss_pred HCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013176 44 KLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (448)
Q Consensus 44 ~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~ 123 (448)
.+|+ .|++.|.-..-.+ .++.++.+.||.|||+++.+|+...... +..|-|++++..||.+-++++..+
T Consensus 72 ~lG~-r~ydvQlig~l~L--~~G~IaEm~TGEGKTL~a~l~ayl~aL~--------G~~VhVvT~NdyLA~RD~e~m~pv 140 (870)
T CHL00122 72 TLGL-RHFDVQLIGGLVL--NDGKIAEMKTGEGKTLVATLPAYLNALT--------GKGVHIVTVNDYLAKRDQEWMGQI 140 (870)
T ss_pred HhCC-CCCchHhhhhHhh--cCCccccccCCCCchHHHHHHHHHHHhc--------CCceEEEeCCHHHHHHHHHHHHHH
Confidence 4678 6888886655444 4568899999999999999988655444 566999999999999999999999
Q ss_pred hcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHH-HHHHccc------cCCCCccEEEEecccccccCC------
Q 013176 124 GSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLI-DMLEAQH------TNLRRVTYLVLDEADRMLDMG------ 190 (448)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~-~~~~~~~------~~~~~~~~iIvDE~h~~~~~~------ 190 (448)
...+++.+.++.++.+..+....+ .++|+++|...|- +++.... ...+.+.+.||||+|.++-..
T Consensus 141 y~~LGLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLIDeArTPLi 218 (870)
T CHL00122 141 YRFLGLTVGLIQEGMSSEERKKNY--LKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEARTPLI 218 (870)
T ss_pred HHHcCCceeeeCCCCChHHHHHhc--CCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheeccCCCcee
Confidence 999999999988776654443333 4789999987552 3333221 134668899999999754100
Q ss_pred ----------CHHHHHHHHHHcCC--------------------------------------------------------
Q 013176 191 ----------FEPQIRKIVTQIRP-------------------------------------------------------- 204 (448)
Q Consensus 191 ----------~~~~~~~~~~~~~~-------------------------------------------------------- 204 (448)
.......+...+..
T Consensus 219 ISg~~~~~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A~~lf~~d 298 (870)
T CHL00122 219 ISGQSKTNIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKELFFKN 298 (870)
T ss_pred ccCCCccchHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHhcC
Confidence 00000000000000
Q ss_pred ------------------------------------------------------------CcceEEEeccCchHHHHHHH
Q 013176 205 ------------------------------------------------------------DRQTLYWSATWPREVETLAR 224 (448)
Q Consensus 205 ------------------------------------------------------------~~~~v~~SAT~~~~~~~~~~ 224 (448)
..++.+||+|.......+ .
T Consensus 299 ~dYiV~dgeV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~te~~Ef-~ 377 (870)
T CHL00122 299 VHYIVRNNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELEF-E 377 (870)
T ss_pred CcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHHHHHHH-H
Confidence 115667777775543333 3
Q ss_pred HHcCCCeEEEeCCcccccccCcceEEEEecchhHHHHHHHHHHh-hhcCCcEEEEecchhHHHHHHHHHHhCCCCeEEEc
Q 013176 225 QFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKE-VMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIH 303 (448)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~ 303 (448)
..++-.+.. ++...+....... ...+.+...|+..+.+.+.+ +..+.++||-|.+++..+.+++.|.+.+++..+++
T Consensus 378 ~iY~l~vv~-IPtnkp~~R~d~~-d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLN 455 (870)
T CHL00122 378 KIYNLEVVC-IPTHRPMLRKDLP-DLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLN 455 (870)
T ss_pred HHhCCCEEE-CCCCCCccceeCC-CeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceee
Confidence 333333332 2222222222222 22344566677777665544 44588999999999999999999999999999999
Q ss_pred CCC-CHHHHHHHHHHHhcC-CCCEEEEeccccCCCCCC
Q 013176 304 GDK-NQSERDWVLAEFRSG-RSPIMTATDVAARGLDVK 339 (448)
Q Consensus 304 ~~~-~~~~r~~~~~~f~~g-~~~vLv~T~~~~~Gidi~ 339 (448)
+.. ..+.-.+++.+ .| .-.|-|||+++++|.||.
T Consensus 456 Ak~~~~~~EA~IIA~--AG~~G~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 456 AKPENVRRESEIVAQ--AGRKGSITIATNMAGRGTDII 491 (870)
T ss_pred CCCccchhHHHHHHh--cCCCCcEEEeccccCCCcCee
Confidence 874 22223334433 34 345999999999999984
No 132
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.85 E-value=3.5e-18 Score=167.90 Aligned_cols=116 Identities=16% Similarity=0.195 Sum_probs=85.6
Q ss_pred cCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhc----CCCCEEEEeccccCCCCC--------
Q 013176 271 DGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRS----GRSPIMTATDVAARGLDV-------- 338 (448)
Q Consensus 271 ~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~----g~~~vLv~T~~~~~Gidi-------- 338 (448)
.+++++|.+.+...++.+++.|...-....++.|+.+ .+...+++|+. +.-.||++|+.+++|||+
T Consensus 469 ~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~ 546 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPD 546 (636)
T ss_pred cCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCCC
Confidence 3668999999999999999999765323445566553 45668888986 467899999999999999
Q ss_pred CC--ccEEEEcCCCCCh-------------------------hhhhhcccccCCCCCC--ceEEEEecCC-ChHHHHHHH
Q 013176 339 KD--IKCVVNYDFPTSL-------------------------EDYVHRIGRTGRAGAR--GTAFTFFTHS-NAKFARDLI 388 (448)
Q Consensus 339 ~~--~~~Vi~~~~p~s~-------------------------~~~~Q~~GR~~R~g~~--g~~~~~~~~~-~~~~~~~l~ 388 (448)
|+ +++||+..+|..+ -.+.|.+||..|...+ ...++++++. .+.+-+.+.
T Consensus 547 ~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~R~~~~yg~~~~ 626 (636)
T TIGR03117 547 KDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDGRIHWPYMESWQ 626 (636)
T ss_pred CCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeCCCCchhHHHHH
Confidence 33 8899988887322 2378999999998776 5566666655 333444433
No 133
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.85 E-value=1.8e-19 Score=169.96 Aligned_cols=304 Identities=18% Similarity=0.245 Sum_probs=199.8
Q ss_pred cHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHH-HhhcCCCc
Q 013176 51 TPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEAL-KFGSRAGI 129 (448)
Q Consensus 51 ~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~-~~~~~~~~ 129 (448)
..++.+.+..+.+++-++|++.||||||.. + .+.+....- ..+..+-+..|++.-|..+++.+. +++..++-
T Consensus 358 f~~R~~ll~~ir~n~vvvivgETGSGKTTQ--l--~QyL~edGY---~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~ 430 (1042)
T KOG0924|consen 358 FACRDQLLSVIRENQVVVIVGETGSGKTTQ--L--AQYLYEDGY---ADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGD 430 (1042)
T ss_pred HHHHHHHHHHHhhCcEEEEEecCCCCchhh--h--HHHHHhccc---ccCCeeeecCchHHHHHHHHHHHHHHhCCcccc
Confidence 556677777777888899999999999975 2 222222211 124567788899988888887765 44333332
Q ss_pred eEEEE--EcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCC--CHHHHHHHHHHcCCC
Q 013176 130 RSTCI--YGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMG--FEPQIRKIVTQIRPD 205 (448)
Q Consensus 130 ~~~~~--~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~--~~~~~~~~~~~~~~~ 205 (448)
.|.+- +.+... ....|-+.|.+.|++-... ...+..+++||+||||.-.-.. ..-.++..+. -+.+
T Consensus 431 ~VGYsIRFEdvT~--------~~T~IkymTDGiLLrEsL~-d~~L~kYSviImDEAHERslNtDilfGllk~~la-rRrd 500 (1042)
T KOG0924|consen 431 TVGYSIRFEDVTS--------EDTKIKYMTDGILLRESLK-DRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLA-RRRD 500 (1042)
T ss_pred ccceEEEeeecCC--------CceeEEEeccchHHHHHhh-hhhhhheeEEEechhhhcccchHHHHHHHHHHHH-hhcc
Confidence 22211 111111 1234778999888765443 2357779999999999643211 0112222222 2357
Q ss_pred cceEEEeccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceEEEEecchhHHHHHHHHHHhh---hcCCcEEEEecch
Q 013176 206 RQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKEV---MDGSRILIFTETK 282 (448)
Q Consensus 206 ~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~k~lVf~~~~ 282 (448)
.++|.+|||+.. +.+...+..-|...+..... .+...+...+..+..+..+.-...+ ...+.+|||....
T Consensus 501 lKliVtSATm~a--~kf~nfFgn~p~f~IpGRTy-----PV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGq 573 (1042)
T KOG0924|consen 501 LKLIVTSATMDA--QKFSNFFGNCPQFTIPGRTY-----PVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQ 573 (1042)
T ss_pred ceEEEeeccccH--HHHHHHhCCCceeeecCCcc-----ceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCC
Confidence 899999999854 46666665455544433222 2223333334444444443322211 1245799999988
Q ss_pred hHHHHHHHHHHh----C------CCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCCCccEEEEcCC---
Q 013176 283 KGCDQVTRQLRM----D------GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVKDIKCVVNYDF--- 349 (448)
Q Consensus 283 ~~~~~l~~~L~~----~------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~Vi~~~~--- 349 (448)
++.+..+..+++ . ++.+..+++.++.+-+.++++.-..|..+++|||+++++.+.+|++.+||..++
T Consensus 574 ediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~ 653 (1042)
T KOG0924|consen 574 EDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKL 653 (1042)
T ss_pred cchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceee
Confidence 877766655543 1 466888999999999888888887888999999999999999999999997764
Q ss_pred ---------------CCChhhhhhcccccCCCCCCceEEEEecCC
Q 013176 350 ---------------PTSLEDYVHRIGRTGRAGARGTAFTFFTHS 379 (448)
Q Consensus 350 ---------------p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 379 (448)
|-|-++--||.|||||+ .+|.|+-+++..
T Consensus 654 kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt-~pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 654 KVYNPRIGMDALQIVPISQANADQRAGRAGRT-GPGTCYRLYTED 697 (1042)
T ss_pred eecccccccceeEEEechhccchhhccccCCC-CCcceeeehhhh
Confidence 34667788999999999 589999999863
No 134
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.85 E-value=1.8e-19 Score=172.85 Aligned_cols=317 Identities=17% Similarity=0.234 Sum_probs=213.9
Q ss_pred CCcHHHHhHHHHhh---c-CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhh
Q 013176 49 EPTPIQAQGWPMAL---K-GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (448)
Q Consensus 49 ~~~~~Q~~~i~~~~---~-~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~ 124 (448)
.+.+||.--+..+. + +-+.|+...+|-|||.. +++.++.+.+... ...-||+||+..| +.|.+++.+||
T Consensus 399 ~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQ-vIaFlayLkq~g~-----~gpHLVVvPsSTl-eNWlrEf~kwC 471 (941)
T KOG0389|consen 399 QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQ-VIAFLAYLKQIGN-----PGPHLVVVPSSTL-ENWLREFAKWC 471 (941)
T ss_pred cccchhhhhHHHHHHHHHccccceehhhccCcchhH-HHHHHHHHHHcCC-----CCCcEEEecchhH-HHHHHHHHHhC
Confidence 58899986665543 3 34679999999999965 6666666666432 3345888997766 77899999998
Q ss_pred cCCCceEEEEEcCCCchHhHHHH-h---cCCcEEEEccHHHHHHHH-ccccCCCCccEEEEecccccccCCCHHHHHHHH
Q 013176 125 SRAGIRSTCIYGGAPKGPQIRDL-R---RGVEIVIATPGRLIDMLE-AQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIV 199 (448)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~iiv~T~~~l~~~~~-~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~ 199 (448)
. .+++...+|........+.. . ..++|+++|+......-. +..+...+++++|+||.|.+-+.. ...++.+.
T Consensus 472 P--sl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~-SeRy~~LM 548 (941)
T KOG0389|consen 472 P--SLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRT-SERYKHLM 548 (941)
T ss_pred C--ceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccc-hHHHHHhc
Confidence 6 46888889887555554433 2 258999999876632111 112234568999999999877765 55666665
Q ss_pred HHcCCCcceEEEeccCchH-HHHHH---HH--------------------------------------------------
Q 013176 200 TQIRPDRQTLYWSATWPRE-VETLA---RQ-------------------------------------------------- 225 (448)
Q Consensus 200 ~~~~~~~~~v~~SAT~~~~-~~~~~---~~-------------------------------------------------- 225 (448)
.. +..+.+++|+||-.+ +.+++ ..
T Consensus 549 ~I--~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFILR 626 (941)
T KOG0389|consen 549 SI--NANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFILR 626 (941)
T ss_pred cc--cccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHHHH
Confidence 43 345568889996321 00000 00
Q ss_pred -----Hc---C-CCeEEEeCC--------------------cccc----ccc--C-------------cceEE-------
Q 013176 226 -----FL---R-NPYKVIIGS--------------------LELK----ANQ--S-------------INQVV------- 250 (448)
Q Consensus 226 -----~~---~-~~~~~~~~~--------------------~~~~----~~~--~-------------~~~~~------- 250 (448)
.+ . ....+.... .... ... . +..++
T Consensus 627 R~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L~~ 706 (941)
T KOG0389|consen 627 RLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKLRK 706 (941)
T ss_pred HHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHHHHH
Confidence 00 0 000000000 0000 000 0 00000
Q ss_pred ------------------------------------------------EEecchhHHHHHHHHHHhhhc-CCcEEEEecc
Q 013176 251 ------------------------------------------------EVVTEAEKYNRLIKLLKEVMD-GSRILIFTET 281 (448)
Q Consensus 251 ------------------------------------------------~~~~~~~~~~~l~~~l~~~~~-~~k~lVf~~~ 281 (448)
...-...|...|..+|.+... |.+||||..-
T Consensus 707 mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFSQF 786 (941)
T KOG0389|consen 707 MAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIFSQF 786 (941)
T ss_pred HHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEeeHH
Confidence 000011255566666665544 6799999999
Q ss_pred hhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCC-CC-EEEEeccccCCCCCCCccEEEEcCCCCChhhhhhc
Q 013176 282 KKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGR-SP-IMTATDVAARGLDVKDIKCVVNYDFPTSLEDYVHR 359 (448)
Q Consensus 282 ~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~-~~-vLv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Q~ 359 (448)
.....-+...|.-.++....+.|...-.+|..++.+|...+ +. +|+.|.+.+.|||+-.+++||++|...+|-.-.|+
T Consensus 787 TqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QA 866 (941)
T KOG0389|consen 787 TQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQA 866 (941)
T ss_pred HHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccchh
Confidence 98888888889999999999999999999999999997643 33 57799999999999999999999999999999999
Q ss_pred ccccCCCCCCceEEEEec
Q 013176 360 IGRTGRAGARGTAFTFFT 377 (448)
Q Consensus 360 ~GR~~R~g~~g~~~~~~~ 377 (448)
--||.|.|+...+.++-.
T Consensus 867 EDRcHRvGQtkpVtV~rL 884 (941)
T KOG0389|consen 867 EDRCHRVGQTKPVTVYRL 884 (941)
T ss_pred HHHHHhhCCcceeEEEEE
Confidence 999999999887755433
No 135
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=1.2e-19 Score=174.01 Aligned_cols=308 Identities=21% Similarity=0.241 Sum_probs=187.1
Q ss_pred HhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHH-HhhcCCCceE--
Q 013176 55 AQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEAL-KFGSRAGIRS-- 131 (448)
Q Consensus 55 ~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~-~~~~~~~~~~-- 131 (448)
++++++|..+.-++||+.||||||.. +.-.+..+--.. .....+.-+=|.-|++.-|-.++++.. +++. ++-.|
T Consensus 262 q~IMEaIn~n~vvIIcGeTGsGKTTQ-vPQFLYEAGf~s-~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~-~~~eVsY 338 (1172)
T KOG0926|consen 262 QRIMEAINENPVVIICGETGSGKTTQ-VPQFLYEAGFAS-EQSSSPGMIGITQPRRVAAIAMAKRVAFELGV-LGSEVSY 338 (1172)
T ss_pred HHHHHHhhcCCeEEEecCCCCCcccc-chHHHHHcccCC-ccCCCCCeeeecCchHHHHHHHHHHHHHHhcc-CccceeE
Confidence 46778888888899999999999974 222222221111 111225578888999988877777765 4433 34333
Q ss_pred EEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCC-----CHHHHHHHHHHcCC--
Q 013176 132 TCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMG-----FEPQIRKIVTQIRP-- 204 (448)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~-----~~~~~~~~~~~~~~-- 204 (448)
...+.+. ......|.+.|.+.|+.-+.+. +.+..++.||+||||.-+-.. ....+-.+......
T Consensus 339 qIRfd~t--------i~e~T~IkFMTDGVLLrEi~~D-flL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~ke~ 409 (1172)
T KOG0926|consen 339 QIRFDGT--------IGEDTSIKFMTDGVLLREIEND-FLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYKEQ 409 (1172)
T ss_pred EEEeccc--------cCCCceeEEecchHHHHHHHHh-HhhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhhhh
Confidence 3333332 1223579999999999887764 457889999999999632211 12222222222222
Q ss_pred ----CcceEEEeccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceEEEEecchh----HHHHHHHHHHhhhcCCcEE
Q 013176 205 ----DRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAE----KYNRLIKLLKEVMDGSRIL 276 (448)
Q Consensus 205 ----~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~l~~~~~~~k~l 276 (448)
..++|.||||+.-+...--+.++..+..+.-.... .-+..++. ......+ .+.....+-+ ..+.+-+|
T Consensus 410 ~~~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdAR-QfPVsIHF--~krT~~DYi~eAfrKtc~IH~-kLP~G~IL 485 (1172)
T KOG0926|consen 410 CQIKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDAR-QFPVSIHF--NKRTPDDYIAEAFRKTCKIHK-KLPPGGIL 485 (1172)
T ss_pred cccCceeEEEEeeeEEecccccCceecCCCCceeeeecc-cCceEEEe--ccCCCchHHHHHHHHHHHHhh-cCCCCcEE
Confidence 56889999998644333223344433332211111 11111111 1111112 2233333333 34456799
Q ss_pred EEecchhHHHHHHHHHHhCCCC----------------------------------------------------------
Q 013176 277 IFTETKKGCDQVTRQLRMDGWP---------------------------------------------------------- 298 (448)
Q Consensus 277 Vf~~~~~~~~~l~~~L~~~~~~---------------------------------------------------------- 298 (448)
||+....++..+++.|++.-..
T Consensus 486 VFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~r 565 (1172)
T KOG0926|consen 486 VFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLR 565 (1172)
T ss_pred EEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchhhh
Confidence 9999999999999999774110
Q ss_pred -----------------------------------------eEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCC
Q 013176 299 -----------------------------------------ALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLD 337 (448)
Q Consensus 299 -----------------------------------------~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gid 337 (448)
+..+++-++.+.+..+++.--.|..-++|+|+++++.+.
T Consensus 566 aa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLT 645 (1172)
T KOG0926|consen 566 AAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLT 645 (1172)
T ss_pred hhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccc
Confidence 002333444455555555555677779999999999999
Q ss_pred CCCccEEEEcCCC--------C----------ChhhhhhcccccCCCCCCceEEEEecCC
Q 013176 338 VKDIKCVVNYDFP--------T----------SLEDYVHRIGRTGRAGARGTAFTFFTHS 379 (448)
Q Consensus 338 i~~~~~Vi~~~~p--------~----------s~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 379 (448)
||++++||..+.- . |-++--||+|||||.| +|.|+-+|+..
T Consensus 646 IPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSSA 704 (1172)
T KOG0926|consen 646 IPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSSA 704 (1172)
T ss_pred cCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhhH
Confidence 9999999966632 2 3344569999999995 79999998854
No 136
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.83 E-value=7.3e-19 Score=160.37 Aligned_cols=313 Identities=15% Similarity=0.181 Sum_probs=206.6
Q ss_pred CCCCcHHHHhHHHHhhc-CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhc
Q 013176 47 FVEPTPIQAQGWPMALK-GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGS 125 (448)
Q Consensus 47 ~~~~~~~Q~~~i~~~~~-~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~ 125 (448)
++.+-|+|++-+...+. |..+++...+|-|||+.++. +....... .-.+|+|| ..+...|.+.+++|..
T Consensus 196 vs~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAla-IA~yyraE--------wplliVcP-AsvrftWa~al~r~lp 265 (689)
T KOG1000|consen 196 VSRLLPFQREGVIFALERGGRILLADEMGLGKTIQALA-IARYYRAE--------WPLLIVCP-ASVRFTWAKALNRFLP 265 (689)
T ss_pred HHhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHH-HHHHHhhc--------CcEEEEec-HHHhHHHHHHHHHhcc
Confidence 44678999998876664 56888889999999987654 33333332 23899999 5777889999999876
Q ss_pred CCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCCCHHHHHHHHHHcCCC
Q 013176 126 RAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPD 205 (448)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~ 205 (448)
... .+..+.++.... ..+.....|.|.+++++..+-. -+....+.++|+||+|.+-+.. ....+.+...+...
T Consensus 266 s~~-pi~vv~~~~D~~---~~~~t~~~v~ivSye~ls~l~~--~l~~~~~~vvI~DEsH~Lk~sk-tkr~Ka~~dllk~a 338 (689)
T KOG1000|consen 266 SIH-PIFVVDKSSDPL---PDVCTSNTVAIVSYEQLSLLHD--ILKKEKYRVVIFDESHMLKDSK-TKRTKAATDLLKVA 338 (689)
T ss_pred ccc-ceEEEecccCCc---cccccCCeEEEEEHHHHHHHHH--HHhcccceEEEEechhhhhccc-hhhhhhhhhHHHHh
Confidence 432 233344433222 1233456799999998855432 2233458899999999876643 44566666666677
Q ss_pred cceEEEeccCch----H---------------HHHHHHHHcCC-CeEEEeCCcc-------------------------c
Q 013176 206 RQTLYWSATWPR----E---------------VETLARQFLRN-PYKVIIGSLE-------------------------L 240 (448)
Q Consensus 206 ~~~v~~SAT~~~----~---------------~~~~~~~~~~~-~~~~~~~~~~-------------------------~ 240 (448)
.+++++|+|+.- + ...+..+++.- ...+...... .
T Consensus 339 khvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~ 418 (689)
T KOG1000|consen 339 KHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLK 418 (689)
T ss_pred hheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 899999999731 1 11111111110 0000000000 0
Q ss_pred ccccCcceEEEEecc-------------------------------------hhHHHHHHHHHHhh-----hcCCcEEEE
Q 013176 241 KANQSINQVVEVVTE-------------------------------------AEKYNRLIKLLKEV-----MDGSRILIF 278 (448)
Q Consensus 241 ~~~~~~~~~~~~~~~-------------------------------------~~~~~~l~~~l~~~-----~~~~k~lVf 278 (448)
..+....+.+..... ..|...+.+++.+. ..+.|.+||
T Consensus 419 qLPpKrr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVF 498 (689)
T KOG1000|consen 419 QLPPKRREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVF 498 (689)
T ss_pred hCCccceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEEE
Confidence 000011111111100 00222233333331 124599999
Q ss_pred ecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcC-CCCEEE-EeccccCCCCCCCccEEEEcCCCCChhhh
Q 013176 279 TETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSG-RSPIMT-ATDVAARGLDVKDIKCVVNYDFPTSLEDY 356 (448)
Q Consensus 279 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~vLv-~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~ 356 (448)
|......+.+...+.+.++....|.|..+..+|...-+.|+.. +..|-| ...++++|+++...+.|++..++|++.-+
T Consensus 499 aHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvL 578 (689)
T KOG1000|consen 499 AHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVL 578 (689)
T ss_pred ehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceE
Confidence 9999999999999999999999999999999999999999854 555533 44788999999999999999999999999
Q ss_pred hhcccccCCCCCCceEEEEe
Q 013176 357 VHRIGRTGRAGARGTAFTFF 376 (448)
Q Consensus 357 ~Q~~GR~~R~g~~g~~~~~~ 376 (448)
+|.--|+.|.|+...+.+.+
T Consensus 579 lQAEDRaHRiGQkssV~v~y 598 (689)
T KOG1000|consen 579 LQAEDRAHRIGQKSSVFVQY 598 (689)
T ss_pred EechhhhhhccccceeeEEE
Confidence 99999999999987764443
No 137
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.83 E-value=7.9e-18 Score=166.83 Aligned_cols=277 Identities=22% Similarity=0.246 Sum_probs=179.5
Q ss_pred CCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhh
Q 013176 45 LGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (448)
Q Consensus 45 ~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~ 124 (448)
.|+ .|+++|.-.--.+ ++.-+..+.||.|||+++.+|+...... +..|-|++++..||..-++++..+.
T Consensus 82 lG~-r~ydVQliGgl~L--h~G~IAEM~TGEGKTL~atlpaylnAL~--------GkgVhVVTvNdYLA~RDae~m~~vy 150 (939)
T PRK12902 82 LGM-RHFDVQLIGGMVL--HEGQIAEMKTGEGKTLVATLPSYLNALT--------GKGVHVVTVNDYLARRDAEWMGQVH 150 (939)
T ss_pred hCC-CcchhHHHhhhhh--cCCceeeecCCCChhHHHHHHHHHHhhc--------CCCeEEEeCCHHHHHhHHHHHHHHH
Confidence 677 7888886554444 4557899999999999999988876555 5669999999999999999999999
Q ss_pred cCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHH-HHHHHcc------ccCCCCccEEEEecccccccCC-------
Q 013176 125 SRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRL-IDMLEAQ------HTNLRRVTYLVLDEADRMLDMG------- 190 (448)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~~~~~------~~~~~~~~~iIvDE~h~~~~~~------- 190 (448)
..+++.|.++.++.+..+ ++..-.+||+++|+..| ++++... ....+.+.+.||||+|.++-..
T Consensus 151 ~~LGLtvg~i~~~~~~~e--rr~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSILIDEArTPLII 228 (939)
T PRK12902 151 RFLGLSVGLIQQDMSPEE--RKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSILIDEARTPLII 228 (939)
T ss_pred HHhCCeEEEECCCCChHH--HHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccceeeccCCCcccc
Confidence 999999999877654433 33344789999999877 2333211 1235678999999999754100
Q ss_pred ---------CHHHHHHHHHHcCC--------------Cc-----------------------------------------
Q 013176 191 ---------FEPQIRKIVTQIRP--------------DR----------------------------------------- 206 (448)
Q Consensus 191 ---------~~~~~~~~~~~~~~--------------~~----------------------------------------- 206 (448)
.......+...+.. ..
T Consensus 229 Sg~~~~~~~~y~~~~~~~~~L~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~~~i~nLy~~~~~~~~~i~~AL~A~~ 308 (939)
T PRK12902 229 SGQVERPQEKYQKAAEVAAALQRKDGIDPEGDYEVDEKQRNVLLTDEGFAKAEQLLGVSDLFDPQDPWAHYIFNALKAKE 308 (939)
T ss_pred cCCCccchHHHHHHHHHHHHhhhhcccCCCCCeEEecCCCeeeEcHHHHHHHHHHhCchhhcCcccHHHHHHHHHHHHHH
Confidence 00011111111100 01
Q ss_pred -------------------------------------------------------------------ceEEEeccCchHH
Q 013176 207 -------------------------------------------------------------------QTLYWSATWPREV 219 (448)
Q Consensus 207 -------------------------------------------------------------------~~v~~SAT~~~~~ 219 (448)
++.+||+|.....
T Consensus 309 lf~~d~dYiV~dg~V~IVDe~TGR~m~grrws~GLHQaIEaKE~v~it~e~~tlAsIT~QnfFr~Y~kLsGMTGTa~te~ 388 (939)
T PRK12902 309 LFIKDVNYIVRNGEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQPETQTLASITYQNFFLLYPKLAGMTGTAKTEE 388 (939)
T ss_pred HHhcCCeEEEECCEEEEEECCCCCCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCCHHHH
Confidence 3445555554333
Q ss_pred HHHHHHHcCCCeEEEeCCcccccccCcceEEEEecchhHHHHHHHHHHhh-hcCCcEEEEecchhHHHHHHHHHHhCCCC
Q 013176 220 ETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKEV-MDGSRILIFTETKKGCDQVTRQLRMDGWP 298 (448)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~k~lVf~~~~~~~~~l~~~L~~~~~~ 298 (448)
..+... ++-++.. ++...+........ ..+.....|+..+.+.+.+. ..+.++||-+.+++..+.+++.|.+.+++
T Consensus 389 ~Ef~~i-Y~l~Vv~-IPTnkP~~R~d~~d-~vy~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~ 465 (939)
T PRK12902 389 VEFEKT-YKLEVTV-IPTNRPRRRQDWPD-QVYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIP 465 (939)
T ss_pred HHHHHH-hCCcEEE-cCCCCCeeeecCCC-eEEcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCc
Confidence 332222 2222221 22211111211122 22345567777777666554 45889999999999999999999999999
Q ss_pred eEEEcCC-CCHHHHHHHHHHHhcCC-CCEEEEeccccCCCCCC
Q 013176 299 ALSIHGD-KNQSERDWVLAEFRSGR-SPIMTATDVAARGLDVK 339 (448)
Q Consensus 299 ~~~~~~~-~~~~~r~~~~~~f~~g~-~~vLv~T~~~~~Gidi~ 339 (448)
+.+++.. ...+.-++++.+ .|+ -.|-|||+++++|.||.
T Consensus 466 h~vLNAk~~~~~~EA~IIa~--AG~~GaVTIATNMAGRGTDIk 506 (939)
T PRK12902 466 HNLLNAKPENVEREAEIVAQ--AGRKGAVTIATNMAGRGTDII 506 (939)
T ss_pred hheeeCCCcchHhHHHHHHh--cCCCCcEEEeccCCCCCcCEe
Confidence 9999997 332333334433 343 45999999999999984
No 138
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.82 E-value=2.5e-19 Score=165.64 Aligned_cols=263 Identities=18% Similarity=0.188 Sum_probs=180.0
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHH
Q 013176 66 DLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIR 145 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (448)
-++-++||.||||.- +++++.. .+..++.-|.+.||.+++++++.. ++.+..++|.......-+
T Consensus 193 Ii~H~GPTNSGKTy~----ALqrl~~--------aksGvycGPLrLLA~EV~~r~na~----gipCdL~TGeE~~~~~~~ 256 (700)
T KOG0953|consen 193 IIMHVGPTNSGKTYR----ALQRLKS--------AKSGVYCGPLRLLAHEVYDRLNAL----GIPCDLLTGEERRFVLDN 256 (700)
T ss_pred EEEEeCCCCCchhHH----HHHHHhh--------hccceecchHHHHHHHHHHHhhhc----CCCccccccceeeecCCC
Confidence 356669999999975 4555554 445799999999999999999885 666666666432211111
Q ss_pred HHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCCCHHHHHHHHHHc-CCCcceEEEeccCchHHHHHHH
Q 013176 146 DLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQI-RPDRQTLYWSATWPREVETLAR 224 (448)
Q Consensus 146 ~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~-~~~~~~v~~SAT~~~~~~~~~~ 224 (448)
...+..+-||.|+.. .-..+++.|+||++.|.+...+-.|.+.+--+ ....++.+ - +.+..+.+
T Consensus 257 --~~~a~hvScTVEM~s--------v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCG---e--psvldlV~ 321 (700)
T KOG0953|consen 257 --GNPAQHVSCTVEMVS--------VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCG---E--PSVLDLVR 321 (700)
T ss_pred --CCcccceEEEEEEee--------cCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccC---C--chHHHHHH
Confidence 224677888877662 12347899999999999887666666554333 23333332 1 22223333
Q ss_pred HH---cCCCeEEEeCCcccccccCcceEEEEecchhHHHHHHHHHHhhhcCCcEEEEecchhHHHHHHHHHHhCCCC-eE
Q 013176 225 QF---LRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWP-AL 300 (448)
Q Consensus 225 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~~~~-~~ 300 (448)
.. .++...+.... . ...-...+.+..-++....|. .|+|-+++....+...+.+.+.. ++
T Consensus 322 ~i~k~TGd~vev~~Ye-------------R-l~pL~v~~~~~~sl~nlk~GD--CvV~FSkk~I~~~k~kIE~~g~~k~a 385 (700)
T KOG0953|consen 322 KILKMTGDDVEVREYE-------------R-LSPLVVEETALGSLSNLKPGD--CVVAFSKKDIFTVKKKIEKAGNHKCA 385 (700)
T ss_pred HHHhhcCCeeEEEeec-------------c-cCcceehhhhhhhhccCCCCC--eEEEeehhhHHHHHHHHHHhcCcceE
Confidence 32 23333322110 0 000011124455555655666 46677899999999999988554 99
Q ss_pred EEcCCCCHHHHHHHHHHHhc--CCCCEEEEeccccCCCCCCCccEEEEcCCC---------CChhhhhhcccccCCCCC-
Q 013176 301 SIHGDKNQSERDWVLAEFRS--GRSPIMTATDVAARGLDVKDIKCVVNYDFP---------TSLEDYVHRIGRTGRAGA- 368 (448)
Q Consensus 301 ~~~~~~~~~~r~~~~~~f~~--g~~~vLv~T~~~~~Gidi~~~~~Vi~~~~p---------~s~~~~~Q~~GR~~R~g~- 368 (448)
+++|+++++.|.+.-..|++ ++++|||||+++++|+|+ +++.||++.+- ....+..|.+|||||.|.
T Consensus 386 VIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~ 464 (700)
T KOG0953|consen 386 VIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSK 464 (700)
T ss_pred EEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccC
Confidence 99999999999999999987 899999999999999999 79999998864 377889999999999863
Q ss_pred --CceEEEEe
Q 013176 369 --RGTAFTFF 376 (448)
Q Consensus 369 --~g~~~~~~ 376 (448)
.|.+.++.
T Consensus 465 ~~~G~vTtl~ 474 (700)
T KOG0953|consen 465 YPQGEVTTLH 474 (700)
T ss_pred CcCceEEEee
Confidence 35555554
No 139
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.81 E-value=5.9e-19 Score=163.50 Aligned_cols=331 Identities=14% Similarity=0.077 Sum_probs=222.3
Q ss_pred HHHHHCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHH
Q 013176 40 EVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEE 119 (448)
Q Consensus 40 ~~~~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~ 119 (448)
+.+..+--.....+|.+++..+.+|+++++.-.|.+||++++.+++....... .....+++.|+.+++.+..+.
T Consensus 277 ~~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~------~~s~~~~~~~~~~~~~~~~~~ 350 (1034)
T KOG4150|consen 277 SLLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLC------HATNSLLPSEMVEHLRNGSKG 350 (1034)
T ss_pred HHHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcC------cccceecchhHHHHhhccCCc
Confidence 33444444467899999999999999999999999999999998887765442 244579999999998665443
Q ss_pred HHHhhcC---CCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCC----CccEEEEecccccccCCCH
Q 013176 120 ALKFGSR---AGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLR----RVTYLVLDEADRMLDMGFE 192 (448)
Q Consensus 120 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~----~~~~iIvDE~h~~~~~~~~ 192 (448)
+.-.... ..--++..+.+.+......-.+.+..++++.|+........+..+.. ...++++||+|.+.... +
T Consensus 351 ~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~-~ 429 (1034)
T KOG4150|consen 351 QVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPT-K 429 (1034)
T ss_pred eEEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecch-h
Confidence 2211110 11123334444444455555667889999999998776655544433 34689999999776532 2
Q ss_pred H----HHHHHHHHc-----CCCcceEEEeccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceEEEE------ecchh
Q 013176 193 P----QIRKIVTQI-----RPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEV------VTEAE 257 (448)
Q Consensus 193 ~----~~~~~~~~~-----~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 257 (448)
. .++.+.+.+ ..+.+++-.+||+...+.-....+..+................+..+... ...+.
T Consensus 430 ~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs~~K~~V~WNP~~~P~~~~~~~~ 509 (1034)
T KOG4150|consen 430 ALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPSSEKLFVLWNPSAPPTSKSEKSS 509 (1034)
T ss_pred hHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCCccceEEEeCCCCCCcchhhhhh
Confidence 2 233332222 24678888899987766555554444444433332221111111111000 01122
Q ss_pred HHHHHHHHHHhhh-cCCcEEEEecchhHHHHHHHHHHh----CCC----CeEEEcCCCCHHHHHHHHHHHhcCCCCEEEE
Q 013176 258 KYNRLIKLLKEVM-DGSRILIFTETKKGCDQVTRQLRM----DGW----PALSIHGDKNQSERDWVLAEFRSGRSPIMTA 328 (448)
Q Consensus 258 ~~~~l~~~l~~~~-~~~k~lVf~~~~~~~~~l~~~L~~----~~~----~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~ 328 (448)
+......++.+.. .+-++|-||+.++.|+.+....+. .+. .+..|.|+...++|.++..+.-.|+..-+|+
T Consensus 510 ~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIa 589 (1034)
T KOG4150|consen 510 KVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIA 589 (1034)
T ss_pred HHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEe
Confidence 3333334444333 466999999999999877655433 221 2456789999999999999999999999999
Q ss_pred eccccCCCCCCCccEEEEcCCCCChhhhhhcccccCCCCCCceEEEEec
Q 013176 329 TDVAARGLDVKDIKCVVNYDFPTSLEDYVHRIGRTGRAGARGTAFTFFT 377 (448)
Q Consensus 329 T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~ 377 (448)
|++++-|||+..++.|+..++|.|++.+.|..||+||..++..++.+..
T Consensus 590 TNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~ 638 (1034)
T KOG4150|consen 590 TNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAF 638 (1034)
T ss_pred cchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEe
Confidence 9999999999999999999999999999999999999988776655443
No 140
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.79 E-value=2.6e-18 Score=138.69 Aligned_cols=119 Identities=45% Similarity=0.775 Sum_probs=109.9
Q ss_pred hHHHHHHHHHHhhh-cCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCC
Q 013176 257 EKYNRLIKLLKEVM-DGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARG 335 (448)
Q Consensus 257 ~~~~~l~~~l~~~~-~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~G 335 (448)
.+...+..++.+.. .++++||||++...++.+++.|++.+.++..+|++++..+|..+++.|+++...+|++|+++++|
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G 91 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARG 91 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcC
Confidence 67777888777654 46799999999999999999999988999999999999999999999999999999999999999
Q ss_pred CCCCCccEEEEcCCCCChhhhhhcccccCCCCCCceEEEE
Q 013176 336 LDVKDIKCVVNYDFPTSLEDYVHRIGRTGRAGARGTAFTF 375 (448)
Q Consensus 336 idi~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~ 375 (448)
+|+|.+++||++++|++...+.|++||++|.|+.+.++++
T Consensus 92 ~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 92 IDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred cChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999988877653
No 141
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.78 E-value=3.2e-16 Score=159.08 Aligned_cols=128 Identities=18% Similarity=0.339 Sum_probs=89.0
Q ss_pred HHHHHHHHHhhh-cCCcEEEEecchhHHHHHHHHHHhC-CCCeEEEcCCCCHHHHHHHHHHHh----cCCCCEEEEeccc
Q 013176 259 YNRLIKLLKEVM-DGSRILIFTETKKGCDQVTRQLRMD-GWPALSIHGDKNQSERDWVLAEFR----SGRSPIMTATDVA 332 (448)
Q Consensus 259 ~~~l~~~l~~~~-~~~k~lVf~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~r~~~~~~f~----~g~~~vLv~T~~~ 332 (448)
...+.+.+.+.. ..+.++|++++.+..+.+++.|... +.+ ...++.. .+..+++.|+ .++..||++|..+
T Consensus 520 ~~~~~~~i~~l~~~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~~---~~~~ll~~f~~~~~~~~~~VL~g~~sf 595 (697)
T PRK11747 520 TAEMAEFLPELLEKHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGDQ---PRQRLLEKHKKRVDEGEGSVLFGLQSF 595 (697)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCCc---hHHHHHHHHHHHhccCCCeEEEEeccc
Confidence 344444443333 2446899999999999999998753 333 3445542 4667887776 3667799999999
Q ss_pred cCCCCCCC--ccEEEEcCCCC-Ch-----------------------------hhhhhcccccCCCCCCceEEEEecCC-
Q 013176 333 ARGLDVKD--IKCVVNYDFPT-SL-----------------------------EDYVHRIGRTGRAGARGTAFTFFTHS- 379 (448)
Q Consensus 333 ~~Gidi~~--~~~Vi~~~~p~-s~-----------------------------~~~~Q~~GR~~R~g~~g~~~~~~~~~- 379 (448)
++|||+|+ +++||+..+|. ++ ..+.|.+||..|...+..+++++++.
T Consensus 596 ~EGVD~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R~ 675 (697)
T PRK11747 596 AEGLDLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRRL 675 (697)
T ss_pred cccccCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEcccc
Confidence 99999996 88999888774 11 13679999999997766667777765
Q ss_pred -ChHHHHHHHHH
Q 013176 380 -NAKFARDLIKI 390 (448)
Q Consensus 380 -~~~~~~~l~~~ 390 (448)
.+.+-+.+++.
T Consensus 676 ~~~~Yg~~~l~s 687 (697)
T PRK11747 676 LTKRYGKRLLDA 687 (697)
T ss_pred cchhHHHHHHHh
Confidence 34444555443
No 142
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.76 E-value=3.1e-17 Score=134.34 Aligned_cols=144 Identities=43% Similarity=0.583 Sum_probs=111.0
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhH
Q 013176 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQI 144 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (448)
+++++.+|||+|||.+++..+....... ..++++|++|+..++.|+.+.+..+... +..+..+.+........
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~------~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 73 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSL------KGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQE 73 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcc------cCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHH
Confidence 3688999999999999887777765541 2567999999999999999999887654 56777777766655555
Q ss_pred HHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCCCHHHHHHHHHHcCCCcceEEEeccC
Q 013176 145 RDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATW 215 (448)
Q Consensus 145 ~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~ 215 (448)
.......+|+++|++.+.............++++|+||+|.+....................+++++|||+
T Consensus 74 ~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 74 KLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred HHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 55567889999999999888776655566789999999999877654443222334445778899999996
No 143
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.76 E-value=1.2e-16 Score=145.71 Aligned_cols=326 Identities=17% Similarity=0.230 Sum_probs=203.7
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEE
Q 013176 26 IRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLV 105 (448)
Q Consensus 26 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vli 105 (448)
++.|...++++...+.+++.----.+.++.+.+..+..++.+++++.||||||...--+.+...... ...|..
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~-------~~~v~C 96 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSH-------LTGVAC 96 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhh-------ccceee
Confidence 7788999999999888876432234566667777777888999999999999964322233332222 345888
Q ss_pred EcCcHHHHHHHHHHHHHhhc-CCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEeccc
Q 013176 106 LAPTRELAVQIQEEALKFGS-RAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEAD 184 (448)
Q Consensus 106 l~P~~~L~~q~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h 184 (448)
..|.+.-+.+++.+...-.+ .+|..|.....-...... +.-+-+||.++|++-.-+. ..+.++++||+||+|
T Consensus 97 TQprrvaamsva~RVadEMDv~lG~EVGysIrfEdC~~~------~T~Lky~tDgmLlrEams~-p~l~~y~viiLDeah 169 (699)
T KOG0925|consen 97 TQPRRVAAMSVAQRVADEMDVTLGEEVGYSIRFEDCTSP------NTLLKYCTDGMLLREAMSD-PLLGRYGVIILDEAH 169 (699)
T ss_pred cCchHHHHHHHHHHHHHHhccccchhccccccccccCCh------hHHHHHhcchHHHHHHhhC-cccccccEEEechhh
Confidence 89999988888877664322 223222211110000000 0012267777776654433 347789999999999
Q ss_pred ccccC--CCHHHHHHHHHHcCCCcceEEEeccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceEEEEecchhHHHHH
Q 013176 185 RMLDM--GFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRL 262 (448)
Q Consensus 185 ~~~~~--~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 262 (448)
.-.-. ..--.++.+... +++.++|.||||+.. .+ .+.+++++..+.+...+ ....++......+.++..
T Consensus 170 ERtlATDiLmGllk~v~~~-rpdLk~vvmSatl~a--~K-fq~yf~n~Pll~vpg~~-----PvEi~Yt~e~erDylEaa 240 (699)
T KOG0925|consen 170 ERTLATDILMGLLKEVVRN-RPDLKLVVMSATLDA--EK-FQRYFGNAPLLAVPGTH-----PVEIFYTPEPERDYLEAA 240 (699)
T ss_pred hhhHHHHHHHHHHHHHHhh-CCCceEEEeecccch--HH-HHHHhCCCCeeecCCCC-----ceEEEecCCCChhHHHHH
Confidence 62110 011122233322 378899999999754 23 44566666555554321 122233333444555544
Q ss_pred HHHHHhhh---cCCcEEEEecchhHHHHHHHHHHhC---------CCCeEEEcCCCCHHHHHHHHHHHh---cC--CCCE
Q 013176 263 IKLLKEVM---DGSRILIFTETKKGCDQVTRQLRMD---------GWPALSIHGDKNQSERDWVLAEFR---SG--RSPI 325 (448)
Q Consensus 263 ~~~l~~~~---~~~k~lVf~~~~~~~~~l~~~L~~~---------~~~~~~~~~~~~~~~r~~~~~~f~---~g--~~~v 325 (448)
...+-++. ..+-+|||....++.+..++.+..+ ...+..+| + .+...+++-.. +| ..+|
T Consensus 241 irtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy---P-~~qq~iFep~p~~~~~~~~Rkv 316 (699)
T KOG0925|consen 241 IRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY---P-AQQQRIFEPAPEKRNGAYGRKV 316 (699)
T ss_pred HHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC---c-hhhccccCCCCcccCCCccceE
Confidence 44332222 2457999999999999999888743 23455555 2 22222222221 22 3479
Q ss_pred EEEeccccCCCCCCCccEEEEcCC------------------CCChhhhhhcccccCCCCCCceEEEEecCC
Q 013176 326 MTATDVAARGLDVKDIKCVVNYDF------------------PTSLEDYVHRIGRTGRAGARGTAFTFFTHS 379 (448)
Q Consensus 326 Lv~T~~~~~Gidi~~~~~Vi~~~~------------------p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 379 (448)
+|+|++++..+.++++.+||..++ |-|-.+-.||.||+||. .+|+|+.++.+.
T Consensus 317 Vvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~ 387 (699)
T KOG0925|consen 317 VVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 387 (699)
T ss_pred EEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHH
Confidence 999999999999999999996663 44677888999999998 899999999864
No 144
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.76 E-value=5.1e-17 Score=162.86 Aligned_cols=311 Identities=15% Similarity=0.202 Sum_probs=211.3
Q ss_pred CCcHHHHhHHHHhhcC-CcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHH-HHhhcC
Q 013176 49 EPTPIQAQGWPMALKG-RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEA-LKFGSR 126 (448)
Q Consensus 49 ~~~~~Q~~~i~~~~~~-~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~-~~~~~~ 126 (448)
..+|+|.++++.+... +++++.+|+|||||.|+-++++. +....+++++.|..+.+..+++.+ +++.+.
T Consensus 1143 ~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~---------~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~ 1213 (1674)
T KOG0951|consen 1143 DFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR---------PDTIGRAVYIAPLEEIADEQYRDWEKKFSKL 1213 (1674)
T ss_pred ccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC---------CccceEEEEecchHHHHHHHHHHHHHhhccc
Confidence 4489999999998865 57889999999999998887776 124678999999999998777665 467777
Q ss_pred CCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCCCHH------HHHHHHH
Q 013176 127 AGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEP------QIRKIVT 200 (448)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~------~~~~~~~ 200 (448)
.|..++.+.|..+.+.. +....+|+|+||+++-.+ . ..+..++.|.||.|.+.+.. ++ .++.+-.
T Consensus 1214 ~G~~~~~l~ge~s~~lk---l~~~~~vii~tpe~~d~l-q----~iQ~v~l~i~d~lh~igg~~-g~v~evi~S~r~ia~ 1284 (1674)
T KOG0951|consen 1214 LGLRIVKLTGETSLDLK---LLQKGQVIISTPEQWDLL-Q----SIQQVDLFIVDELHLIGGVY-GAVYEVICSMRYIAS 1284 (1674)
T ss_pred cCceEEecCCccccchH---HhhhcceEEechhHHHHH-h----hhhhcceEeeehhhhhcccC-CceEEEEeeHHHHHH
Confidence 78888888887655433 444578999999999544 2 56778999999999877422 21 2666666
Q ss_pred HcCCCcceEEEeccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceE---EEEecchhHHHH-----HHHHHHhhhcC
Q 013176 201 QIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQV---VEVVTEAEKYNR-----LIKLLKEVMDG 272 (448)
Q Consensus 201 ~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-----l~~~l~~~~~~ 272 (448)
.+.++.+++++|..+.+. ..+ ++-...-..+......+...... +........... .....+....+
T Consensus 1285 q~~k~ir~v~ls~~lana-~d~----ig~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~ 1359 (1674)
T KOG0951|consen 1285 QLEKKIRVVALSSSLANA-RDL----IGASSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNR 1359 (1674)
T ss_pred HHHhheeEEEeehhhccc-hhh----ccccccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCC
Confidence 777888999999887542 111 22221112222221222222222 222211111111 11222233357
Q ss_pred CcEEEEecchhHHHHHHHHHHh----------------------CCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEec
Q 013176 273 SRILIFTETKKGCDQVTRQLRM----------------------DGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD 330 (448)
Q Consensus 273 ~k~lVf~~~~~~~~~l~~~L~~----------------------~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~ 330 (448)
++.+||++++++|..++..|-. +..+..+=|.+++..+...+-..|..|.+.|+|...
T Consensus 1360 k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~ 1439 (1674)
T KOG0951|consen 1360 KPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSR 1439 (1674)
T ss_pred CCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEc
Confidence 7999999999999988765521 112223337888888888999999999999999886
Q ss_pred cccCCCCCCCccEEEEcC-----------CCCChhhhhhcccccCCCCCCceEEEEecCCChHHHHHH
Q 013176 331 VAARGLDVKDIKCVVNYD-----------FPTSLEDYVHRIGRTGRAGARGTAFTFFTHSNAKFARDL 387 (448)
Q Consensus 331 ~~~~Gidi~~~~~Vi~~~-----------~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l 387 (448)
- ..|+-.. ...||..+ .+.+.+.+.|+.|++.| .|.|++++....+.+++++
T Consensus 1440 ~-~~~~~~~-~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~yykkf 1502 (1674)
T KOG0951|consen 1440 D-CYGTKLK-AHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCHTPKKEYYKKF 1502 (1674)
T ss_pred c-ccccccc-ceEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEecCchHHHHHHh
Confidence 6 6777764 33444322 24577899999999999 5789999998888877764
No 145
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.75 E-value=3.3e-18 Score=124.14 Aligned_cols=78 Identities=42% Similarity=0.697 Sum_probs=75.3
Q ss_pred HHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCCCccEEEEcCCCCChhhhhhcccccCCCC
Q 013176 290 RQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVKDIKCVVNYDFPTSLEDYVHRIGRTGRAG 367 (448)
Q Consensus 290 ~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g 367 (448)
++|++.++++..+|++++.++|..+++.|++++.+|||+|+++++|+|+|.+++||++++|+++.+|.|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 367888999999999999999999999999999999999999999999999999999999999999999999999986
No 146
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.75 E-value=2.3e-16 Score=161.48 Aligned_cols=119 Identities=16% Similarity=0.294 Sum_probs=87.0
Q ss_pred HHHHHHHHHHhhhc--CCcEEEEecchhHHHHHHHHHHhCCCC-eEEEcCCCCHHHHHHHHHHHhcCCC-CEEEEecccc
Q 013176 258 KYNRLIKLLKEVMD--GSRILIFTETKKGCDQVTRQLRMDGWP-ALSIHGDKNQSERDWVLAEFRSGRS-PIMTATDVAA 333 (448)
Q Consensus 258 ~~~~l~~~l~~~~~--~~k~lVf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~~~~r~~~~~~f~~g~~-~vLv~T~~~~ 333 (448)
....+...+.+... .+++|||+++.+.++.+++.++..... ....++..+ +...++.|+.+.- -++|+|..++
T Consensus 463 ~~~~~~~~i~~~~~~~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~~~lv~~gsf~ 539 (654)
T COG1199 463 LLAKLAAYLREILKASPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEGLILVGGGSFW 539 (654)
T ss_pred HHHHHHHHHHHHHhhcCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCCeEEEeecccc
Confidence 34444444444333 448999999999999999999876543 333344433 4478888876544 8999999999
Q ss_pred CCCCCCC--ccEEEEcCCCC------------------------------ChhhhhhcccccCCCCCCceEEEEecCC
Q 013176 334 RGLDVKD--IKCVVNYDFPT------------------------------SLEDYVHRIGRTGRAGARGTAFTFFTHS 379 (448)
Q Consensus 334 ~Gidi~~--~~~Vi~~~~p~------------------------------s~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 379 (448)
+|||+|+ ++.||+...|. .+..+.|.+||+.|...+..++++++..
T Consensus 540 EGVD~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~R 617 (654)
T COG1199 540 EGVDFPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDKR 617 (654)
T ss_pred CcccCCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEeccc
Confidence 9999996 67899888773 2335789999999987776777777764
No 147
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.74 E-value=3.2e-17 Score=140.73 Aligned_cols=152 Identities=21% Similarity=0.154 Sum_probs=102.2
Q ss_pred CCcHHHHhHHHHhhc-------CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHH
Q 013176 49 EPTPIQAQGWPMALK-------GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEAL 121 (448)
Q Consensus 49 ~~~~~Q~~~i~~~~~-------~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~ 121 (448)
.|+++|.+++..+.. .+++++.+|||+|||.+++..+..... +++|++|+..|+.|+.+.+.
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~-----------~~l~~~p~~~l~~Q~~~~~~ 71 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR-----------KVLIVAPNISLLEQWYDEFD 71 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC-----------EEEEEESSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc-----------ceeEecCHHHHHHHHHHHHH
Confidence 689999999999884 578999999999999987755555432 59999999999999999997
Q ss_pred HhhcCCCceEEE----------EE-cCCCchHhHHHHhcCCcEEEEccHHHHHHHHccc-----------cCCCCccEEE
Q 013176 122 KFGSRAGIRSTC----------IY-GGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQH-----------TNLRRVTYLV 179 (448)
Q Consensus 122 ~~~~~~~~~~~~----------~~-~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~-----------~~~~~~~~iI 179 (448)
.+.......... .. ................+++++|.+.+........ .....+++||
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI 151 (184)
T PF04851_consen 72 DFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVI 151 (184)
T ss_dssp HHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEE
T ss_pred HhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEE
Confidence 765432111110 00 0111112222334567899999999987764321 2234678999
Q ss_pred EecccccccCCCHHHHHHHHHHcCCCcceEEEeccCc
Q 013176 180 LDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWP 216 (448)
Q Consensus 180 vDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~ 216 (448)
+||||++.... .+..+.. .+...+++|||||.
T Consensus 152 ~DEaH~~~~~~---~~~~i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 152 IDEAHHYPSDS---SYREIIE--FKAAFILGLTATPF 183 (184)
T ss_dssp EETGGCTHHHH---HHHHHHH--SSCCEEEEEESS-S
T ss_pred EehhhhcCCHH---HHHHHHc--CCCCeEEEEEeCcc
Confidence 99999975422 1455555 46778999999985
No 148
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.73 E-value=6.6e-16 Score=155.70 Aligned_cols=309 Identities=19% Similarity=0.180 Sum_probs=176.2
Q ss_pred CcHHHHhHHHHhhc------CCcEEE--EcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHH
Q 013176 50 PTPIQAQGWPMALK------GRDLIG--IAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEAL 121 (448)
Q Consensus 50 ~~~~Q~~~i~~~~~------~~~~lv--~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~ 121 (448)
-+.||-.|+..+.. ...+++ .|.||+|||++= .-++..+... ..+.+..|..-.|.|.-|+-+.++
T Consensus 409 rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aN-ARImyaLsd~-----~~g~RfsiALGLRTLTLQTGda~r 482 (1110)
T TIGR02562 409 RFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLAN-ARAMYALRDD-----KQGARFAIALGLRSLTLQTGHALK 482 (1110)
T ss_pred CcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHH-HHHHHHhCCC-----CCCceEEEEccccceeccchHHHH
Confidence 46799999988764 133433 399999999873 3344444332 235678888888888888877777
Q ss_pred HhhcCCCceEEEEEcC-------------------------------------------CCchHhHHHHh--------cC
Q 013176 122 KFGSRAGIRSTCIYGG-------------------------------------------APKGPQIRDLR--------RG 150 (448)
Q Consensus 122 ~~~~~~~~~~~~~~~~-------------------------------------------~~~~~~~~~~~--------~~ 150 (448)
+-..-..-...++.|+ .........+. -.
T Consensus 483 ~rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~ 562 (1110)
T TIGR02562 483 TRLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLA 562 (1110)
T ss_pred HhcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhc
Confidence 6432211122222221 11110011111 12
Q ss_pred CcEEEEccHHHHHHHHccc---cCCC--C--ccEEEEecccccccCCCHHHHHHHHHHc-CCCcceEEEeccCchHHHHH
Q 013176 151 VEIVIATPGRLIDMLEAQH---TNLR--R--VTYLVLDEADRMLDMGFEPQIRKIVTQI-RPDRQTLYWSATWPREVETL 222 (448)
Q Consensus 151 ~~iiv~T~~~l~~~~~~~~---~~~~--~--~~~iIvDE~h~~~~~~~~~~~~~~~~~~-~~~~~~v~~SAT~~~~~~~~ 222 (448)
.+|+|||+++++......+ ..+. . -+.|||||+|.+....+ ..+..++..+ .-..++++||||+|+.....
T Consensus 563 apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~~-~~L~rlL~w~~~lG~~VlLmSATLP~~l~~~ 641 (1110)
T TIGR02562 563 APVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPEDL-PALLRLVQLAGLLGSRVLLSSATLPPALVKT 641 (1110)
T ss_pred CCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHHH-HHHHHHHHHHHHcCCCEEEEeCCCCHHHHHH
Confidence 6799999999987763221 1111 1 25899999998655432 2333333322 24678999999999876543
Q ss_pred HHH-----------HcCCCe-EEEeCCcccccc--------------------------------cCcceEEEEecch--
Q 013176 223 ARQ-----------FLRNPY-KVIIGSLELKAN--------------------------------QSINQVVEVVTEA-- 256 (448)
Q Consensus 223 ~~~-----------~~~~~~-~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~-- 256 (448)
+.. ..+.+. ...+........ ....-.+..+...
T Consensus 642 L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a~i~~~~~~~~ 721 (1110)
T TIGR02562 642 LFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRLAELLSLSSLPR 721 (1110)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccceEEEeecCCccc
Confidence 322 222211 111110000000 0011111111111
Q ss_pred ---hHHHHHHHHHHh--------hh-----cCCc---EEEEecchhHHHHHHHHHHhC------CCCeEEEcCCCCHHHH
Q 013176 257 ---EKYNRLIKLLKE--------VM-----DGSR---ILIFTETKKGCDQVTRQLRMD------GWPALSIHGDKNQSER 311 (448)
Q Consensus 257 ---~~~~~l~~~l~~--------~~-----~~~k---~lVf~~~~~~~~~l~~~L~~~------~~~~~~~~~~~~~~~r 311 (448)
.....+.+.+.+ .. .+++ .+|-+++++.+-.+++.|... .+.+++||+..+...|
T Consensus 722 ~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~R 801 (1110)
T TIGR02562 722 ENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLR 801 (1110)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHH
Confidence 122222222211 11 1233 478888888888888887543 2347889999988877
Q ss_pred HHHHHHH----------------------hc----CCCCEEEEeccccCCCCCCCccEEEEcCCCCChhhhhhcccccCC
Q 013176 312 DWVLAEF----------------------RS----GRSPIMTATDVAARGLDVKDIKCVVNYDFPTSLEDYVHRIGRTGR 365 (448)
Q Consensus 312 ~~~~~~f----------------------~~----g~~~vLv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Q~~GR~~R 365 (448)
..+++.. ++ +...|+|+|++++.|+|+ +.+.+|. -|.++.+++|++||+.|
T Consensus 802 s~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~-dfd~~~~--~~~~~~sliQ~aGR~~R 878 (1110)
T TIGR02562 802 SYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDH-DYDWAIA--DPSSMRSIIQLAGRVNR 878 (1110)
T ss_pred HHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEecc-cCCeeee--ccCcHHHHHHHhhcccc
Confidence 7766553 11 356799999999999998 5666663 35677999999999999
Q ss_pred CCC
Q 013176 366 AGA 368 (448)
Q Consensus 366 ~g~ 368 (448)
.+.
T Consensus 879 ~~~ 881 (1110)
T TIGR02562 879 HRL 881 (1110)
T ss_pred ccc
Confidence 765
No 149
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.73 E-value=4.8e-15 Score=151.87 Aligned_cols=121 Identities=17% Similarity=0.239 Sum_probs=86.8
Q ss_pred HHHHHHHHHHhhhc--CCcEEEEecchhHHHHHHHHHHhCCC-------CeEEEcCCCCHHHHHHHHHHHhc----CCCC
Q 013176 258 KYNRLIKLLKEVMD--GSRILIFTETKKGCDQVTRQLRMDGW-------PALSIHGDKNQSERDWVLAEFRS----GRSP 324 (448)
Q Consensus 258 ~~~~l~~~l~~~~~--~~k~lVf~~~~~~~~~l~~~L~~~~~-------~~~~~~~~~~~~~r~~~~~~f~~----g~~~ 324 (448)
....+.+.+.+... .+.+|||+++....+.+.+.+.+.+. ...++.+. ...++..+++.|+. +.-.
T Consensus 506 ~~~~l~~~i~~~~~~~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~-~~~~~~~~l~~f~~~~~~~~ga 584 (705)
T TIGR00604 506 LVRNLGELLVEFSKIIPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETK-DAQETSDALERYKQAVSEGRGA 584 (705)
T ss_pred HHHHHHHHHHHHhhcCCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCC-CcchHHHHHHHHHHHHhcCCce
Confidence 34555555554443 46799999999999999988875421 22333332 22577889999964 4556
Q ss_pred EEEEe--ccccCCCCCCC--ccEEEEcCCCC-Ch------------------------------hhhhhcccccCCCCCC
Q 013176 325 IMTAT--DVAARGLDVKD--IKCVVNYDFPT-SL------------------------------EDYVHRIGRTGRAGAR 369 (448)
Q Consensus 325 vLv~T--~~~~~Gidi~~--~~~Vi~~~~p~-s~------------------------------~~~~Q~~GR~~R~g~~ 369 (448)
||+|+ ..+++|||+++ ++.||+.++|. ++ ..+.|.+||+-|..++
T Consensus 585 vL~av~gGk~sEGIDf~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR~IR~~~D 664 (705)
T TIGR00604 585 VLLSVAGGKVSEGIDFCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGRVIRHKDD 664 (705)
T ss_pred EEEEecCCcccCccccCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCccccCcCc
Confidence 99999 88999999997 88999999885 11 2356999999998777
Q ss_pred ceEEEEecCC
Q 013176 370 GTAFTFFTHS 379 (448)
Q Consensus 370 g~~~~~~~~~ 379 (448)
-.++++++..
T Consensus 665 ~G~iillD~R 674 (705)
T TIGR00604 665 YGSIVLLDKR 674 (705)
T ss_pred eEEEEEEehh
Confidence 6677777654
No 150
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.71 E-value=3.5e-15 Score=149.83 Aligned_cols=129 Identities=24% Similarity=0.328 Sum_probs=102.7
Q ss_pred ecchhHHHHHHHHHHhh-hcCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEecc
Q 013176 253 VTEAEKYNRLIKLLKEV-MDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDV 331 (448)
Q Consensus 253 ~~~~~~~~~l~~~l~~~-~~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~ 331 (448)
.....|+..+++.+.+. ..+.++||-+.+++..+.+++.|+..+++..++++.....+...+-+.=+ .-.|-|||++
T Consensus 608 ~t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~--~GaVTIATNM 685 (1112)
T PRK12901 608 KTKREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQ--PGTVTIATNM 685 (1112)
T ss_pred cCHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHhcCC--CCcEEEeccC
Confidence 34566777777666554 45889999999999999999999999999988888755444433333322 3459999999
Q ss_pred ccCCCCCC--------CccEEEEcCCCCChhhhhhcccccCCCCCCceEEEEecCCChHH
Q 013176 332 AARGLDVK--------DIKCVVNYDFPTSLEDYVHRIGRTGRAGARGTAFTFFTHSNAKF 383 (448)
Q Consensus 332 ~~~Gidi~--------~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 383 (448)
+++|.||. +=-+||....+.|..--.|..||+||.|.+|.+..|++-.|.-+
T Consensus 686 AGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDdLm 745 (1112)
T PRK12901 686 AGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDNLM 745 (1112)
T ss_pred cCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccHHH
Confidence 99999996 12368888899999999999999999999999998888776543
No 151
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.70 E-value=7.8e-15 Score=134.32 Aligned_cols=143 Identities=13% Similarity=0.236 Sum_probs=108.4
Q ss_pred HHHHHHHHHHhhhc---CCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcC-CCCEEEEe-ccc
Q 013176 258 KYNRLIKLLKEVMD---GSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSG-RSPIMTAT-DVA 332 (448)
Q Consensus 258 ~~~~l~~~l~~~~~---~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~vLv~T-~~~ 332 (448)
|++.|.+.+....+ .-|.|||..-......+.-.|.+.|+.++-+.|+|++..|...++.|++. ++.|++.+ .+.
T Consensus 621 KIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAG 700 (791)
T KOG1002|consen 621 KIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAG 700 (791)
T ss_pred HHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccC
Confidence 55555554433332 34789998888888888888999999999999999999999999999875 56665544 888
Q ss_pred cCCCCCCCccEEEEcCCCCChhhhhhcccccCCCCCCceE--EEEecCCChHHHHHHHHHHHHhCCCCcHHH
Q 013176 333 ARGLDVKDIKCVVNYDFPTSLEDYVHRIGRTGRAGARGTA--FTFFTHSNAKFARDLIKILQEAGQIVSPAL 402 (448)
Q Consensus 333 ~~Gidi~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l 402 (448)
+.-+|+-..++|+.+|+=|+++--.|.--|..|.|+...+ +.|+.++. .-.++++..++....+...+
T Consensus 701 GVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEns--iE~kIieLQeKKa~mihaTi 770 (791)
T KOG1002|consen 701 GVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENS--IEEKIIELQEKKANMIHATI 770 (791)
T ss_pred ceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhcc--HHHHHHHHHHHHhhhhhhhc
Confidence 8899999999999999889999999999999999986544 55555443 34566666555544444333
No 152
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.70 E-value=1.1e-15 Score=145.29 Aligned_cols=118 Identities=17% Similarity=0.277 Sum_probs=99.4
Q ss_pred HHHHHHHHHHhhh--cCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHh--cCCCCEEEEe-ccc
Q 013176 258 KYNRLIKLLKEVM--DGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFR--SGRSPIMTAT-DVA 332 (448)
Q Consensus 258 ~~~~l~~~l~~~~--~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~--~g~~~vLv~T-~~~ 332 (448)
+...+++.++... ...+++|...-.....-+...|++.++....++|....++|..+++.|+ +|..+|++-+ .+.
T Consensus 730 Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAG 809 (901)
T KOG4439|consen 730 KIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAG 809 (901)
T ss_pred HHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccC
Confidence 5555555555542 2558888888888888888999999999999999999999999999996 4556777766 777
Q ss_pred cCCCCCCCccEEEEcCCCCChhhhhhcccccCCCCCCceEEEE
Q 013176 333 ARGLDVKDIKCVVNYDFPTSLEDYVHRIGRTGRAGARGTAFTF 375 (448)
Q Consensus 333 ~~Gidi~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~ 375 (448)
+.|+|+-+.+|+|.+|+.|+++--.|+.-|..|.|+...++++
T Consensus 810 GVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~Ih 852 (901)
T KOG4439|consen 810 GVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFIH 852 (901)
T ss_pred cceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEEE
Confidence 8999999999999999999999999999999999998877554
No 153
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.68 E-value=3e-16 Score=154.64 Aligned_cols=329 Identities=16% Similarity=0.229 Sum_probs=204.7
Q ss_pred CCcHHHHhHHHHhhc---C-CcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhh
Q 013176 49 EPTPIQAQGWPMALK---G-RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (448)
Q Consensus 49 ~~~~~Q~~~i~~~~~---~-~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~ 124 (448)
++.+||..-+..+.+ + -+-++.-.+|-|||... +.++.++..... ...-.+|+||+..|. .|..++.+|.
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQt-IsLitYLmE~K~----~~GP~LvivPlstL~-NW~~Ef~kWa 467 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQT-ISLITYLMEHKQ----MQGPFLIIVPLSTLV-NWSSEFPKWA 467 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHHH-HHHHHHHHHHcc----cCCCeEEeccccccC-Cchhhccccc
Confidence 789999988877653 2 36788999999999774 444444444322 234478899998886 4677777765
Q ss_pred cCCCceEEEEEcCCCchHhH--HHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCCCHHHHHHHHHHc
Q 013176 125 SRAGIRSTCIYGGAPKGPQI--RDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQI 202 (448)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~ 202 (448)
.. +..+...|........ ......++|+++|++.+.. ....+..-++.++||||-|+|.+.. ..+...+...
T Consensus 468 PS--v~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik--dk~lLsKI~W~yMIIDEGHRmKNa~--~KLt~~L~t~ 541 (1157)
T KOG0386|consen 468 PS--VQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK--DKALLSKISWKYMIIDEGHRMKNAI--CKLTDTLNTH 541 (1157)
T ss_pred cc--eeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC--CHHHHhccCCcceeecccccccchh--hHHHHHhhcc
Confidence 32 3334344432222111 1223578999999988754 2222233457799999999987632 2222222222
Q ss_pred CCCcceEEEeccCchH----HHHHHHHHc---------------------------------------------------
Q 013176 203 RPDRQTLYWSATWPRE----VETLARQFL--------------------------------------------------- 227 (448)
Q Consensus 203 ~~~~~~v~~SAT~~~~----~~~~~~~~~--------------------------------------------------- 227 (448)
-.....+++|+|+..+ +..+....+
T Consensus 542 y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRRl 621 (1157)
T KOG0386|consen 542 YRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRRL 621 (1157)
T ss_pred ccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHhh
Confidence 2333445666664211 000000000
Q ss_pred --------CCCeEEEeCC------------------cc--c-ccc---------------------------cCcceEE-
Q 013176 228 --------RNPYKVIIGS------------------LE--L-KAN---------------------------QSINQVV- 250 (448)
Q Consensus 228 --------~~~~~~~~~~------------------~~--~-~~~---------------------------~~~~~~~- 250 (448)
++.....+.. .. . ... ..+....
T Consensus 622 KkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~~~~~ 701 (1157)
T KOG0386|consen 622 KKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSYTLHYD 701 (1157)
T ss_pred hHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhccccccccC
Confidence 0000000000 00 0 000 0000000
Q ss_pred --EEecchhHHHHHHHHHHhhh-cCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCC---CC
Q 013176 251 --EVVTEAEKYNRLIKLLKEVM-DGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGR---SP 324 (448)
Q Consensus 251 --~~~~~~~~~~~l~~~l~~~~-~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~---~~ 324 (448)
.......|++.|..++-+.. .+.+++.||....-...+..+|.-.++....+.|....++|...++.|+... ..
T Consensus 702 ~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~ 781 (1157)
T KOG0386|consen 702 IKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFI 781 (1157)
T ss_pred hhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceee
Confidence 00111223444444443322 3789999999999999999999999999999999999999999999998643 34
Q ss_pred EEEEeccccCCCCCCCccEEEEcCCCCChhhhhhcccccCCCCCCceEEEEecCCChHHHHHHHH
Q 013176 325 IMTATDVAARGLDVKDIKCVVNYDFPTSLEDYVHRIGRTGRAGARGTAFTFFTHSNAKFARDLIK 389 (448)
Q Consensus 325 vLv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~ 389 (448)
+|..|.+.+.|+|+..++.||+||..|++....|+--|+.|.|+...+-++......++.++++.
T Consensus 782 FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~sveE~il~ 846 (1157)
T KOG0386|consen 782 FLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNSVEEKILA 846 (1157)
T ss_pred eeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhhHHHHHHHH
Confidence 77899999999999999999999999999999999999999999887766665554444444433
No 154
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.66 E-value=5.2e-14 Score=140.56 Aligned_cols=281 Identities=11% Similarity=0.097 Sum_probs=163.8
Q ss_pred EcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHH---H
Q 013176 70 IAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIR---D 146 (448)
Q Consensus 70 ~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 146 (448)
.+-+|||||.+|+-.+-..+.. ++.+||++|...|..|+.+.++.... +..+..++++.+..+..+ .
T Consensus 166 ~~~~GSGKTevyl~~i~~~l~~--------Gk~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~~w~~ 235 (665)
T PRK14873 166 QALPGEDWARRLAAAAAATLRA--------GRGALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYRRWLA 235 (665)
T ss_pred hcCCCCcHHHHHHHHHHHHHHc--------CCeEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHHHH
Confidence 3446999999988766655554 77899999999999999999998643 246777888877665433 3
Q ss_pred Hhc-CCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCC-----CH-HHHHHHHHHcCCCcceEEEeccCchHH
Q 013176 147 LRR-GVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMG-----FE-PQIRKIVTQIRPDRQTLYWSATWPREV 219 (448)
Q Consensus 147 ~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~-----~~-~~~~~~~~~~~~~~~~v~~SAT~~~~~ 219 (448)
... ...|+|+|-..+ ...+.++++||+||-|.-+... |. ..+.. .+.-..+..+|+.|||++-+.
T Consensus 236 ~~~G~~~IViGtRSAv-------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~-~Ra~~~~~~lvLgSaTPSles 307 (665)
T PRK14873 236 VLRGQARVVVGTRSAV-------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVAL-LRAHQHGCALLIGGHARTAEA 307 (665)
T ss_pred HhCCCCcEEEEcceeE-------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHH-HHHHHcCCcEEEECCCCCHHH
Confidence 333 478999995333 3457889999999999643221 11 22222 233336788999999987554
Q ss_pred HHHHHHHcCCCeEEEeCCcccccccCcceEEEEec-----c--h---hHHHHHHHHHHhhhcCCcEEEEecchhHH----
Q 013176 220 ETLARQFLRNPYKVIIGSLELKANQSINQVVEVVT-----E--A---EKYNRLIKLLKEVMDGSRILIFTETKKGC---- 285 (448)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~--~---~~~~~l~~~l~~~~~~~k~lVf~~~~~~~---- 285 (448)
...+. -+.....................+.... + . .--..+.+.+++..+.+++|||+|.+-.+
T Consensus 308 ~~~~~--~g~~~~~~~~~~~~~~~~P~v~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~~gqvll~lnRrGyap~l~ 385 (665)
T PRK14873 308 QALVE--SGWAHDLVAPRPVVRARAPRVRALGDSGLALERDPAARAARLPSLAFRAARDALEHGPVLVQVPRRGYVPSLA 385 (665)
T ss_pred HHHHh--cCcceeeccccccccCCCCeEEEEeCchhhhccccccccCccCHHHHHHHHHHHhcCcEEEEecCCCCCCeeE
Confidence 43332 1111111111000000000011111000 0 0 01123445555444444999999986522
Q ss_pred -------------------------------------------------------HHHHHHHHhC--CCCeEEEcCCCCH
Q 013176 286 -------------------------------------------------------DQVTRQLRMD--GWPALSIHGDKNQ 308 (448)
Q Consensus 286 -------------------------------------------------------~~l~~~L~~~--~~~~~~~~~~~~~ 308 (448)
+.+.+.|++. +.++..+
T Consensus 386 C~~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~l~~~g~Gter~eeeL~~~FP~~~V~r~------ 459 (665)
T PRK14873 386 CARCRTPARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSDRLRAVVVGARRTAEELGRAFPGVPVVTS------ 459 (665)
T ss_pred hhhCcCeeECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCCcceeeeccHHHHHHHHHHHCCCCCEEEE------
Confidence 2222222222 1122222
Q ss_pred HHHHHHHHHHhcCCCCEEEEeccccCCCCCCCccEEEEcCCCC------------ChhhhhhcccccCCCCCCceEEEEe
Q 013176 309 SERDWVLAEFRSGRSPIMTATDVAARGLDVKDIKCVVNYDFPT------------SLEDYVHRIGRTGRAGARGTAFTFF 376 (448)
Q Consensus 309 ~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~Vi~~~~p~------------s~~~~~Q~~GR~~R~g~~g~~~~~~ 376 (448)
+++.+++.|. ++.+|||+|+.++.=+. +++..|+..|... ....+.|.+||+||....|.+++..
T Consensus 460 -d~d~~l~~~~-~~~~IlVGTqgaepm~~-g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V~iq~ 536 (665)
T PRK14873 460 -GGDQVVDTVD-AGPALVVATPGAEPRVE-GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQVVVVA 536 (665)
T ss_pred -ChHHHHHhhc-cCCCEEEECCCCccccc-CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEEEEEe
Confidence 2334778886 58999999993221122 3567776666431 3445789999999988889988775
Q ss_pred cCC
Q 013176 377 THS 379 (448)
Q Consensus 377 ~~~ 379 (448)
.+.
T Consensus 537 ~p~ 539 (665)
T PRK14873 537 ESS 539 (665)
T ss_pred CCC
Confidence 443
No 155
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.64 E-value=1.4e-14 Score=144.38 Aligned_cols=122 Identities=23% Similarity=0.337 Sum_probs=104.9
Q ss_pred HHHHHHHHHHhhh-cCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCC--CCEEEEeccccC
Q 013176 258 KYNRLIKLLKEVM-DGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGR--SPIMTATDVAAR 334 (448)
Q Consensus 258 ~~~~l~~~l~~~~-~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~--~~vLv~T~~~~~ 334 (448)
|+..|.-+|+... ++.++|||....+....+...|..+|+....+.|...-++|...+++|+... .+.|+.|..-+.
T Consensus 1261 KLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggv 1340 (1958)
T KOG0391|consen 1261 KLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGV 1340 (1958)
T ss_pred hHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCcc
Confidence 4555555554433 4779999999999999999999999999999999999999999999998654 357789999999
Q ss_pred CCCCCCccEEEEcCCCCChhhhhhcccccCCCCCCceEEEEecCC
Q 013176 335 GLDVKDIKCVVNYDFPTSLEDYVHRIGRTGRAGARGTAFTFFTHS 379 (448)
Q Consensus 335 Gidi~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 379 (448)
|||+-+.++||+||..|++.--.|.--||.|.|+...+.++-.-.
T Consensus 1341 GiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLIS 1385 (1958)
T KOG0391|consen 1341 GINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLIS 1385 (1958)
T ss_pred ccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeec
Confidence 999999999999999999999999999999999998886654433
No 156
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.61 E-value=9.7e-14 Score=136.80 Aligned_cols=289 Identities=17% Similarity=0.184 Sum_probs=182.6
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHH
Q 013176 66 DLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIR 145 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (448)
-.+|.+|+|+|||.+. +..+...... ...+++++..+++|+.++...++..+-. ++. .+.+... ...
T Consensus 51 V~vVRSpMGTGKTtaL-i~wLk~~l~~------~~~~VLvVShRrSL~~sL~~rf~~~~l~-gFv---~Y~d~~~-~~i- 117 (824)
T PF02399_consen 51 VLVVRSPMGTGKTTAL-IRWLKDALKN------PDKSVLVVSHRRSLTKSLAERFKKAGLS-GFV---NYLDSDD-YII- 117 (824)
T ss_pred eEEEECCCCCCcHHHH-HHHHHHhccC------CCCeEEEEEhHHHHHHHHHHHHhhcCCC-cce---eeecccc-ccc-
Confidence 3567799999999764 4344443221 2667999999999999999999874321 111 1111111 000
Q ss_pred HHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCCCHHH-------HHHHHHHcCCCcceEEEeccCchH
Q 013176 146 DLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQ-------IRKIVTQIRPDRQTLYWSATWPRE 218 (448)
Q Consensus 146 ~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~-------~~~~~~~~~~~~~~v~~SAT~~~~ 218 (448)
-...++-+++..++|.+... ..+.++++||+||+-.++..-+.+. +..+...+.....+|++-|++...
T Consensus 118 -~~~~~~rLivqIdSL~R~~~---~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~ 193 (824)
T PF02399_consen 118 -DGRPYDRLIVQIDSLHRLDG---SLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQ 193 (824)
T ss_pred -cccccCeEEEEehhhhhccc---ccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHH
Confidence 01235678888888866532 2456789999999997665433322 233445556778899999999999
Q ss_pred HHHHHHHHcCCCeEEEeCCcccccccCcceEEEE-----------------------------------ecchhHHHHHH
Q 013176 219 VETLARQFLRNPYKVIIGSLELKANQSINQVVEV-----------------------------------VTEAEKYNRLI 263 (448)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~l~ 263 (448)
+.+++..+.++.....+........-.-..-... ....+...-.-
T Consensus 194 tvdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~ 273 (824)
T PF02399_consen 194 TVDFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFS 273 (824)
T ss_pred HHHHHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHH
Confidence 9999888766543333222211111110000000 00011122233
Q ss_pred HHHHhhhcCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCCC--c
Q 013176 264 KLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVKD--I 341 (448)
Q Consensus 264 ~~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~--~ 341 (448)
.++.....++++.||++|...++.+++..+.....+..+++..+..+. +.| ++.+|++-|+++..|+++.. .
T Consensus 274 ~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~W--~~~~VviYT~~itvG~Sf~~~HF 347 (824)
T PF02399_consen 274 ELLARLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV----ESW--KKYDVVIYTPVITVGLSFEEKHF 347 (824)
T ss_pred HHHHHHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc----ccc--cceeEEEEeceEEEEeccchhhc
Confidence 444555668899999999999999999998888888888887665522 233 47889999999999999964 3
Q ss_pred cEEEEcCCC----CChhhhhhcccccCCCCCCceEEEEecC
Q 013176 342 KCVVNYDFP----TSLEDYVHRIGRTGRAGARGTAFTFFTH 378 (448)
Q Consensus 342 ~~Vi~~~~p----~s~~~~~Q~~GR~~R~g~~g~~~~~~~~ 378 (448)
+.|..|=-| .++.+..|++||+... .....+++++.
T Consensus 348 ~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l-~~~ei~v~~d~ 387 (824)
T PF02399_consen 348 DSMFAYVKPMSYGPDMVSVYQMLGRVRSL-LDNEIYVYIDA 387 (824)
T ss_pred eEEEEEecCCCCCCcHHHHHHHHHHHHhh-ccCeEEEEEec
Confidence 334444223 3566789999999655 44555666654
No 157
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.61 E-value=2.4e-15 Score=110.37 Aligned_cols=81 Identities=41% Similarity=0.717 Sum_probs=76.7
Q ss_pred HHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCCCccEEEEcCCCCChhhhhhcccccCCC
Q 013176 287 QVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVKDIKCVVNYDFPTSLEDYVHRIGRTGRA 366 (448)
Q Consensus 287 ~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~ 366 (448)
.+++.|++.++.+..+|++++.++|..+++.|+++..+||++|+++++|+|+|.+++||++++|++..+|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 46677888889999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 013176 367 G 367 (448)
Q Consensus 367 g 367 (448)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 5
No 158
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.60 E-value=1.1e-13 Score=131.89 Aligned_cols=121 Identities=20% Similarity=0.301 Sum_probs=104.4
Q ss_pred HHHHHHHHHHhhh-cCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCC-EEEEeccccCC
Q 013176 258 KYNRLIKLLKEVM-DGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSP-IMTATDVAARG 335 (448)
Q Consensus 258 ~~~~l~~~l~~~~-~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~-vLv~T~~~~~G 335 (448)
|+..|.++|.... ++.++|+|+...+....+.++|...++....+.|+....+|..++.+|+..++- +|+.|.+.+-|
T Consensus 1029 KL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLG 1108 (1185)
T KOG0388|consen 1029 KLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLG 1108 (1185)
T ss_pred ceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCccc
Confidence 4444555554433 577999999999999999999999999999999999999999999999986654 56789999999
Q ss_pred CCCCCccEEEEcCCCCChhhhhhcccccCCCCCCceEEEEecC
Q 013176 336 LDVKDIKCVVNYDFPTSLEDYVHRIGRTGRAGARGTAFTFFTH 378 (448)
Q Consensus 336 idi~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~ 378 (448)
||+...+.||+||..|++..-.|..-|+.|.|+...+.++-.-
T Consensus 1109 INLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~ 1151 (1185)
T KOG0388|consen 1109 INLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLI 1151 (1185)
T ss_pred ccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeec
Confidence 9999999999999999999999999999999998877655443
No 159
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.51 E-value=3.5e-12 Score=133.21 Aligned_cols=288 Identities=15% Similarity=0.158 Sum_probs=162.4
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhH
Q 013176 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQI 144 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (448)
+..+|+.-+|||||++....+ ..+... ...++++|||-++.|-.|+.+.+..+........ ...+..+..
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A-~~l~~~-----~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s~~~Lk 343 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLA-RLLLEL-----PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAESTSELK 343 (962)
T ss_pred CceEEEeecCCchHHHHHHHH-HHHHhc-----cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccCHHHHH
Confidence 468999999999999855444 344443 3488999999999999999999999865432211 222333333
Q ss_pred HHHhcC-CcEEEEccHHHHHHHHccc--cCCCCccEEEEecccccccCCCHHHHHHHHHHcCCCcceEEEeccCchHHHH
Q 013176 145 RDLRRG-VEIVIATPGRLIDMLEAQH--TNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVET 221 (448)
Q Consensus 145 ~~~~~~-~~iiv~T~~~l~~~~~~~~--~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~ 221 (448)
..+... ..|||||.+.|-....... ..-..--+||+||||+-. ++..-..+...+ ++...+++|+||...-..
T Consensus 344 ~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ---~G~~~~~~~~~~-~~a~~~gFTGTPi~~~d~ 419 (962)
T COG0610 344 ELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQ---YGELAKLLKKAL-KKAIFIGFTGTPIFKEDK 419 (962)
T ss_pred HHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhcc---ccHHHHHHHHHh-ccceEEEeeCCccccccc
Confidence 444433 4899999999977665431 112222379999999842 344444444444 457889999998533222
Q ss_pred H-HHHHcCCCeEEEeCCcccccccCcceEEEEe----------cc----------------------------------h
Q 013176 222 L-ARQFLRNPYKVIIGSLELKANQSINQVVEVV----------TE----------------------------------A 256 (448)
Q Consensus 222 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~----------------------------------~ 256 (448)
. ....++.................+..++... .. .
T Consensus 420 ~tt~~~fg~ylh~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~ 499 (962)
T COG0610 420 DTTKDVFGDYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLAMLAV 499 (962)
T ss_pred cchhhhhcceeEEEecchhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhHHhcchH
Confidence 2 1222332222221111111111100000000 00 0
Q ss_pred h---HHHHHHHHHHh-hhcCCcEEEEecchhHHHHHHHHHHhCCCC----------eEEE---cC---------CCCHHH
Q 013176 257 E---KYNRLIKLLKE-VMDGSRILIFTETKKGCDQVTRQLRMDGWP----------ALSI---HG---------DKNQSE 310 (448)
Q Consensus 257 ~---~~~~l~~~l~~-~~~~~k~lVf~~~~~~~~~l~~~L~~~~~~----------~~~~---~~---------~~~~~~ 310 (448)
. ....+.+.... ...+.++++.+.++..+..+++........ +..+ .+ ......
T Consensus 500 r~~~~a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 579 (962)
T COG0610 500 RLIRAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHAKLKDE 579 (962)
T ss_pred HHHHHHHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhhhHHHHHH
Confidence 0 00011111112 122458888888888555555443221000 0000 00 111223
Q ss_pred HHHHHHHH--hcCCCCEEEEeccccCCCCCCCccEEEEcCCCCChhhhhhcccccCCCC
Q 013176 311 RDWVLAEF--RSGRSPIMTATDVAARGLDVKDIKCVVNYDFPTSLEDYVHRIGRTGRAG 367 (448)
Q Consensus 311 r~~~~~~f--~~g~~~vLv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g 367 (448)
+.....+| .+...++||.++++-+|+|.|.+.++. +|-|.-...++|++-|+.|.-
T Consensus 580 ~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmY-vDK~Lk~H~L~QAisRtNR~~ 637 (962)
T COG0610 580 KKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLY-VDKPLKYHNLIQAISRTNRVF 637 (962)
T ss_pred HhhhhhhhcCcCCCCCEEEEEccccccCCccccceEE-eccccccchHHHHHHHhccCC
Confidence 33444443 356789999999999999999766654 566787889999999999964
No 160
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.48 E-value=6e-11 Score=111.52 Aligned_cols=289 Identities=19% Similarity=0.251 Sum_probs=195.9
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHhhcCC-Cce----EEEEEc--------------CCCchHhHHHHh-----------
Q 013176 99 EGPIVLVLAPTRELAVQIQEEALKFGSRA-GIR----STCIYG--------------GAPKGPQIRDLR----------- 148 (448)
Q Consensus 99 ~~~~vlil~P~~~L~~q~~~~~~~~~~~~-~~~----~~~~~~--------------~~~~~~~~~~~~----------- 148 (448)
..++||||+|++..|.++.+.+.++.... .+. -..-+| ......++..+.
T Consensus 36 tRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~FrlG 115 (442)
T PF06862_consen 36 TRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRLG 115 (442)
T ss_pred CCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEEe
Confidence 37899999999999999998888765441 000 000001 011111221111
Q ss_pred --------------cCCcEEEEccHHHHHHHHc------cccCCCCccEEEEecccccccCCCHHHHHHHHHHcCC----
Q 013176 149 --------------RGVEIVIATPGRLIDMLEA------QHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRP---- 204 (448)
Q Consensus 149 --------------~~~~iiv~T~~~l~~~~~~------~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~---- 204 (448)
..+||||++|=-|-..+.. ....++++.++|+|.+|.++-. .+..+..++..+..
T Consensus 116 ik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQ-NW~Hv~~v~~~lN~~P~~ 194 (442)
T PF06862_consen 116 IKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQ-NWEHVLHVFEHLNLQPKK 194 (442)
T ss_pred EEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHh-hHHHHHHHHHHhccCCCC
Confidence 1389999999887666653 2235788999999999965433 34455555444421
Q ss_pred --------------------CcceEEEeccCchHHHHHHHHHcCCCeEEEeCCcc-------cccccCcceEEEEecchh
Q 013176 205 --------------------DRQTLYWSATWPREVETLARQFLRNPYKVIIGSLE-------LKANQSINQVVEVVTEAE 257 (448)
Q Consensus 205 --------------------~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 257 (448)
-+|.+++|+...+++..+....+.+.......... ......+.|.+...+...
T Consensus 195 ~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s 274 (442)
T PF06862_consen 195 SHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSS 274 (442)
T ss_pred CCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCC
Confidence 24899999999999888888866554332211111 122334555555433221
Q ss_pred -------HHHHHHH-HHHhhh---cCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEE
Q 013176 258 -------KYNRLIK-LLKEVM---DGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIM 326 (448)
Q Consensus 258 -------~~~~l~~-~l~~~~---~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vL 326 (448)
.++-... ++-... ...++|||+++--+--.+-+.|++.++....++...+..+....-..|.+|+.++|
T Consensus 275 ~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iL 354 (442)
T PF06862_consen 275 PADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPIL 354 (442)
T ss_pred cchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEE
Confidence 2222221 222222 34589999999999999999999999999999999999999999999999999999
Q ss_pred EEeccc--cCCCCCCCccEEEEcCCCCChhhhhhcccccCCCCC------CceEEEEecCCChHHHHHHH
Q 013176 327 TATDVA--ARGLDVKDIKCVVNYDFPTSLEDYVHRIGRTGRAGA------RGTAFTFFTHSNAKFARDLI 388 (448)
Q Consensus 327 v~T~~~--~~Gidi~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~------~g~~~~~~~~~~~~~~~~l~ 388 (448)
+.|.-+ -+-..+.++++||+|.+|..+.-|...+.-...... ...|.++++.-|.-.++.+.
T Consensus 355 L~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErIV 424 (442)
T PF06862_consen 355 LYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERIV 424 (442)
T ss_pred EEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHHh
Confidence 999443 356778899999999999999888887765554432 57889999988887776653
No 161
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.47 E-value=3.5e-12 Score=126.77 Aligned_cols=318 Identities=21% Similarity=0.228 Sum_probs=197.6
Q ss_pred CCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhh
Q 013176 45 LGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (448)
Q Consensus 45 ~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~ 124 (448)
.|+ .++.+| .+-.+.-+..-+..+-||-|||+++.+|+.-.... ++.+.+++...-|+.--++++..+.
T Consensus 77 lg~-~~~dVQ--liG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~--------gkgVhvVTvNdYLA~RDae~m~~l~ 145 (822)
T COG0653 77 LGM-RHFDVQ--LLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALA--------GKGVHVVTVNDYLARRDAEWMGPLY 145 (822)
T ss_pred cCC-ChhhHH--HhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcC--------CCCcEEeeehHHhhhhCHHHHHHHH
Confidence 455 455554 55555555667889999999999999988665544 5568888889999999999999999
Q ss_pred cCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHH-HHHHHcc------ccCCCCccEEEEeccccccc---------
Q 013176 125 SRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRL-IDMLEAQ------HTNLRRVTYLVLDEADRMLD--------- 188 (448)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~~~~~------~~~~~~~~~iIvDE~h~~~~--------- 188 (448)
..+++++.....+.+..+....+ .+||..+|...| ++++..+ ......+.+.|+||++.++-
T Consensus 146 ~~LGlsvG~~~~~m~~~ek~~aY--~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLiI 223 (822)
T COG0653 146 EFLGLSVGVILAGMSPEEKRAAY--ACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLII 223 (822)
T ss_pred HHcCCceeeccCCCChHHHHHHH--hcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccceee
Confidence 99999999988888665544443 578999998765 2222211 11245678999999996541
Q ss_pred -C---C---CHHHHHHHHHHcCC--------CcceE--------------------------------------------
Q 013176 189 -M---G---FEPQIRKIVTQIRP--------DRQTL-------------------------------------------- 209 (448)
Q Consensus 189 -~---~---~~~~~~~~~~~~~~--------~~~~v-------------------------------------------- 209 (448)
. . ....+..+...+.. ..+.+
T Consensus 224 SG~~~~~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D 303 (822)
T COG0653 224 SGPAEDSSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRD 303 (822)
T ss_pred ecccccCchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcC
Confidence 1 0 11222222222211 11111
Q ss_pred -----------------------------------------------------------------EEeccCchHHHHHHH
Q 013176 210 -----------------------------------------------------------------YWSATWPREVETLAR 224 (448)
Q Consensus 210 -----------------------------------------------------------------~~SAT~~~~~~~~~~ 224 (448)
+||+|.......+..
T Consensus 304 ~dYIVrd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~ 383 (822)
T COG0653 304 VDYIVRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDV 383 (822)
T ss_pred CeeEEecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhh
Confidence 222222111111111
Q ss_pred HHcCCCeEEEeCCcccccccCcceEEEEecchhHHHHHHHHHHh-hhcCCcEEEEecchhHHHHHHHHHHhCCCCeEEEc
Q 013176 225 QFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKE-VMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIH 303 (448)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~ 303 (448)
.+. ..... ++......+... ..........|+..+++.+++ +..+.++||-..+++..+.+.+.|++.+++..+++
T Consensus 384 iY~-l~vv~-iPTnrp~~R~D~-~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLN 460 (822)
T COG0653 384 IYG-LDVVV-IPTNRPIIRLDE-PDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLN 460 (822)
T ss_pred ccC-Cceee-ccCCCcccCCCC-ccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeec
Confidence 111 00100 111100111111 111222345566666665554 44588999999999999999999999999999998
Q ss_pred CCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCCCcc-----------EEEEcCCCCChhhhhhcccccCCCCCCceE
Q 013176 304 GDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVKDIK-----------CVVNYDFPTSLEDYVHRIGRTGRAGARGTA 372 (448)
Q Consensus 304 ~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~-----------~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~ 372 (448)
......+-..+-+.-+ ..-|-|||+++++|-||.--. +||-..-..|-.---|..||+||.|.+|.+
T Consensus 461 Ak~h~~EA~Iia~AG~--~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S 538 (822)
T COG0653 461 AKNHAREAEIIAQAGQ--PGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSS 538 (822)
T ss_pred cccHHHHHHHHhhcCC--CCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchh
Confidence 8777544444433323 234889999999999985211 355555455555566999999999999988
Q ss_pred EEEecCCC
Q 013176 373 FTFFTHSN 380 (448)
Q Consensus 373 ~~~~~~~~ 380 (448)
-.+++-.+
T Consensus 539 ~F~lSleD 546 (822)
T COG0653 539 RFYLSLED 546 (822)
T ss_pred hhhhhhHH
Confidence 77776543
No 162
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.46 E-value=5.3e-12 Score=134.69 Aligned_cols=334 Identities=17% Similarity=0.210 Sum_probs=208.8
Q ss_pred CCCcHHHHhHHHHhhc-----CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013176 48 VEPTPIQAQGWPMALK-----GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALK 122 (448)
Q Consensus 48 ~~~~~~Q~~~i~~~~~-----~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~ 122 (448)
..++++|.+.+..+.. ..+.++..++|.|||+..+..+......... ..+.++++|| .+++.+|.+++.+
T Consensus 337 ~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~----~~~~~liv~p-~s~~~nw~~e~~k 411 (866)
T COG0553 337 AELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKV----YLGPALIVVP-ASLLSNWKREFEK 411 (866)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccC----CCCCeEEEec-HHHHHHHHHHHhh
Confidence 4689999998877552 4567888999999998755544432222110 1356899999 5678899999988
Q ss_pred hhcCCCceEEEEEcCCCc----hHhHHHHhcC-----CcEEEEccHHHHHHH-HccccCCCCccEEEEecccccccCCCH
Q 013176 123 FGSRAGIRSTCIYGGAPK----GPQIRDLRRG-----VEIVIATPGRLIDML-EAQHTNLRRVTYLVLDEADRMLDMGFE 192 (448)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-----~~iiv~T~~~l~~~~-~~~~~~~~~~~~iIvDE~h~~~~~~~~ 192 (448)
+...... +...+|.... .+....+... .+++++|++.+.... ......-..++.+|+||+|.+.+.. .
T Consensus 412 ~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~~-s 489 (866)
T COG0553 412 FAPDLRL-VLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQ-S 489 (866)
T ss_pred hCccccc-eeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhhh-h
Confidence 8665443 6666665542 3334333332 789999999887632 1223344567899999999865533 2
Q ss_pred HHHHHHHHHcCCCcceEEEeccCch-HHH---HHHH-HH-----------------------------------------
Q 013176 193 PQIRKIVTQIRPDRQTLYWSATWPR-EVE---TLAR-QF----------------------------------------- 226 (448)
Q Consensus 193 ~~~~~~~~~~~~~~~~v~~SAT~~~-~~~---~~~~-~~----------------------------------------- 226 (448)
.....+. .+. ....+.+|+||-. .+. .+.. ..
T Consensus 490 ~~~~~l~-~~~-~~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 567 (866)
T COG0553 490 SEGKALQ-FLK-ALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGPLEARELGIELLRK 567 (866)
T ss_pred HHHHHHH-HHh-hcceeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccchhhHHHHHHHHHH
Confidence 2222222 221 1122455555411 000 0000 00
Q ss_pred ------cCCCeEE--Ee---------------------------C----------Cc-cccc------------------
Q 013176 227 ------LRNPYKV--II---------------------------G----------SL-ELKA------------------ 242 (448)
Q Consensus 227 ------~~~~~~~--~~---------------------------~----------~~-~~~~------------------ 242 (448)
++..... .. . .. ....
T Consensus 568 ~i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 647 (866)
T COG0553 568 LLSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSELNILALLTR 647 (866)
T ss_pred HHHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHH
Confidence 0000000 00 0 00 0000
Q ss_pred -------ccCcceE--EEE--------------------ecch-hHHHHHHHHH-H-hhhcCC--cEEEEecchhHHHHH
Q 013176 243 -------NQSINQV--VEV--------------------VTEA-EKYNRLIKLL-K-EVMDGS--RILIFTETKKGCDQV 288 (448)
Q Consensus 243 -------~~~~~~~--~~~--------------------~~~~-~~~~~l~~~l-~-~~~~~~--k~lVf~~~~~~~~~l 288 (448)
+..+... ... .... .+...+.+++ . ....+. ++++|++.......+
T Consensus 648 lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il 727 (866)
T COG0553 648 LRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLL 727 (866)
T ss_pred HHHhccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHH
Confidence 0000000 000 0001 4566666666 3 333465 899999999999999
Q ss_pred HHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcC--CCCEEEEeccccCCCCCCCccEEEEcCCCCChhhhhhcccccCCC
Q 013176 289 TRQLRMDGWPALSIHGDKNQSERDWVLAEFRSG--RSPIMTATDVAARGLDVKDIKCVVNYDFPTSLEDYVHRIGRTGRA 366 (448)
Q Consensus 289 ~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g--~~~vLv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~ 366 (448)
...|+..++....++|+++.+.|...++.|.++ ..-+++.+.+.+.|+|+-..++||++|+.|++....|+..|+.|.
T Consensus 728 ~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~Ri 807 (866)
T COG0553 728 EDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRI 807 (866)
T ss_pred HHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEeccccChHHHHHHHHHHHHh
Confidence 999999988899999999999999999999986 334566668999999999999999999999999999999999999
Q ss_pred CCCceEEEEecCCChHHHHHHHHH
Q 013176 367 GARGTAFTFFTHSNAKFARDLIKI 390 (448)
Q Consensus 367 g~~g~~~~~~~~~~~~~~~~l~~~ 390 (448)
|+...+.++-.......-+++.+.
T Consensus 808 gQ~~~v~v~r~i~~~tiEe~i~~~ 831 (866)
T COG0553 808 GQKRPVKVYRLITRGTIEEKILEL 831 (866)
T ss_pred cCcceeEEEEeecCCcHHHHHHHH
Confidence 998877555444433333444333
No 163
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.46 E-value=8.1e-12 Score=122.84 Aligned_cols=120 Identities=18% Similarity=0.268 Sum_probs=99.2
Q ss_pred HHHHHHHHHHhhhc-CCcEEEEecchhHHHHHHHHHHh----------------------CCCCeEEEcCCCCHHHHHHH
Q 013176 258 KYNRLIKLLKEVMD-GSRILIFTETKKGCDQVTRQLRM----------------------DGWPALSIHGDKNQSERDWV 314 (448)
Q Consensus 258 ~~~~l~~~l~~~~~-~~k~lVf~~~~~~~~~l~~~L~~----------------------~~~~~~~~~~~~~~~~r~~~ 314 (448)
|+-.|+++|+.... |.++|||..+......+..+|.. .|...+.|.|......|.+.
T Consensus 1127 KmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~ 1206 (1567)
T KOG1015|consen 1127 KMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKW 1206 (1567)
T ss_pred ceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHH
Confidence 33445566654443 78999999999998888888843 13457789999999999999
Q ss_pred HHHHhcCC----CCEEEEeccccCCCCCCCccEEEEcCCCCChhhhhhcccccCCCCCCceEEEEec
Q 013176 315 LAEFRSGR----SPIMTATDVAARGLDVKDIKCVVNYDFPTSLEDYVHRIGRTGRAGARGTAFTFFT 377 (448)
Q Consensus 315 ~~~f~~g~----~~vLv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~ 377 (448)
.+.|++-. ...||.|.+.+-|||+-.++.||+||..|++.--+|.+=|+.|.|+...|+++-.
T Consensus 1207 ~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRf 1273 (1567)
T KOG1015|consen 1207 AEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRF 1273 (1567)
T ss_pred HHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhh
Confidence 99998631 2379999999999999999999999999999999999999999999988877644
No 164
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.42 E-value=6.6e-13 Score=103.77 Aligned_cols=136 Identities=21% Similarity=0.189 Sum_probs=81.7
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchH
Q 013176 63 KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGP 142 (448)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (448)
+++-.++-..+|+|||.-.+..++....+. +.++|||.||+.+++.+.+.++.. ++++.. ..-.
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~-------~~rvLvL~PTRvva~em~~aL~~~----~~~~~t---~~~~-- 66 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIKR-------RLRVLVLAPTRVVAEEMYEALKGL----PVRFHT---NARM-- 66 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHHT-------T--EEEEESSHHHHHHHHHHTTTS----SEEEES---TTSS--
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHHc-------cCeEEEecccHHHHHHHHHHHhcC----CcccCc---eeee--
Confidence 445567889999999987676666665553 778999999999999988888753 333221 1100
Q ss_pred hHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCCCHHHHHHHHHHc--CCCcceEEEeccCchHH
Q 013176 143 QIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQI--RPDRQTLYWSATWPREV 219 (448)
Q Consensus 143 ~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~--~~~~~~v~~SAT~~~~~ 219 (448)
.....+.-|-+.|+..+...+.+ .....++++||+||||...... . .....+..+ .....+|++|||+|...
T Consensus 67 --~~~~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~Dp~s-I-A~rg~l~~~~~~g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 67 --RTHFGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFTDPTS-I-AARGYLRELAESGEAKVIFMTATPPGSE 140 (148)
T ss_dssp ------SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT--SHHH-H-HHHHHHHHHHHTTS-EEEEEESS-TT--
T ss_pred --ccccCCCcccccccHHHHHHhcC-cccccCccEEEEeccccCCHHH-H-hhheeHHHhhhccCeeEEEEeCCCCCCC
Confidence 12223456889999988777665 5557889999999999643221 1 111122222 23357999999998654
No 165
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.39 E-value=5.4e-12 Score=117.12 Aligned_cols=157 Identities=18% Similarity=0.171 Sum_probs=91.7
Q ss_pred HHHhHHHHhh-------------cCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHH
Q 013176 53 IQAQGWPMAL-------------KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEE 119 (448)
Q Consensus 53 ~Q~~~i~~~~-------------~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~ 119 (448)
||.+++..+. ..+..++..++|+|||+.++..+. .+...... .....+||+||. .+..||..+
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~-~l~~~~~~--~~~~~~LIv~P~-~l~~~W~~E 76 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALIS-YLKNEFPQ--RGEKKTLIVVPS-SLLSQWKEE 76 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHH-HHHHCCTT--SS-S-EEEEE-T-TTHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhh-hhhhcccc--ccccceeEeecc-chhhhhhhh
Confidence 5777776653 335789999999999987554443 33332110 112359999998 888999999
Q ss_pred HHHhhcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHH---ccccCCCCccEEEEecccccccCCCHHHHH
Q 013176 120 ALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLE---AQHTNLRRVTYLVLDEADRMLDMGFEPQIR 196 (448)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~---~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~ 196 (448)
+.++.....+++....+...............+++|+|++.+..... ...+...++++||+||+|.+.+.. .....
T Consensus 77 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~-s~~~~ 155 (299)
T PF00176_consen 77 IEKWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKD-SKRYK 155 (299)
T ss_dssp HHHHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTT-SHHHH
T ss_pred hccccccccccccccccccccccccccccccceeeeccccccccccccccccccccccceeEEEeccccccccc-ccccc
Confidence 99998654566666665541222222233468899999999971100 001112348999999999985543 33333
Q ss_pred HHHHHcCCCcceEEEeccCc
Q 013176 197 KIVTQIRPDRQTLYWSATWP 216 (448)
Q Consensus 197 ~~~~~~~~~~~~v~~SAT~~ 216 (448)
.+ ..+. ....+++||||.
T Consensus 156 ~l-~~l~-~~~~~lLSgTP~ 173 (299)
T PF00176_consen 156 AL-RKLR-ARYRWLLSGTPI 173 (299)
T ss_dssp HH-HCCC-ECEEEEE-SS-S
T ss_pred cc-cccc-cceEEeeccccc
Confidence 33 3354 666788999974
No 166
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.37 E-value=9.2e-12 Score=113.35 Aligned_cols=76 Identities=28% Similarity=0.285 Sum_probs=59.0
Q ss_pred CCCCCCcHHHHhHH----HHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHH
Q 013176 45 LGFVEPTPIQAQGW----PMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEA 120 (448)
Q Consensus 45 ~~~~~~~~~Q~~~i----~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~ 120 (448)
++| +|||.|.+.+ ..+..+.++++.+|||+|||++++++++.++....... .+.+++|.++|.++.+|....+
T Consensus 5 FPy-~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~--~~~kvi~~t~T~~~~~q~i~~l 81 (289)
T smart00488 5 FPY-EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERI--QKIKLIYLSRTVSEIEKRLEEL 81 (289)
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccc--cccceeEEeccHHHHHHHHHHH
Confidence 557 6799999955 44556789999999999999999999987765532110 1347999999999999987777
Q ss_pred HHh
Q 013176 121 LKF 123 (448)
Q Consensus 121 ~~~ 123 (448)
++.
T Consensus 82 ~~~ 84 (289)
T smart00488 82 RKL 84 (289)
T ss_pred Hhc
Confidence 664
No 167
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.37 E-value=9.2e-12 Score=113.35 Aligned_cols=76 Identities=28% Similarity=0.285 Sum_probs=59.0
Q ss_pred CCCCCCcHHHHhHH----HHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHH
Q 013176 45 LGFVEPTPIQAQGW----PMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEA 120 (448)
Q Consensus 45 ~~~~~~~~~Q~~~i----~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~ 120 (448)
++| +|||.|.+.+ ..+..+.++++.+|||+|||++++++++.++....... .+.+++|.++|.++.+|....+
T Consensus 5 FPy-~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~--~~~kvi~~t~T~~~~~q~i~~l 81 (289)
T smart00489 5 FPY-EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERI--QKIKLIYLSRTVSEIEKRLEEL 81 (289)
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccc--cccceeEEeccHHHHHHHHHHH
Confidence 557 6799999955 44556789999999999999999999987765532110 1347999999999999987777
Q ss_pred HHh
Q 013176 121 LKF 123 (448)
Q Consensus 121 ~~~ 123 (448)
++.
T Consensus 82 ~~~ 84 (289)
T smart00489 82 RKL 84 (289)
T ss_pred Hhc
Confidence 664
No 168
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.16 E-value=2.3e-09 Score=99.88 Aligned_cols=339 Identities=23% Similarity=0.245 Sum_probs=206.1
Q ss_pred CCcHHHHhHHHHhhcCCcEEEE-cCCCChH--HHHHHHHHHHHhhcCC-------Cc--cC--------------CCCce
Q 013176 49 EPTPIQAQGWPMALKGRDLIGI-AETGSGK--TLSYLLPAFVHVSAQP-------RL--VQ--------------GEGPI 102 (448)
Q Consensus 49 ~~~~~Q~~~i~~~~~~~~~lv~-~~tGsGK--T~~~~l~~l~~~~~~~-------~~--~~--------------~~~~~ 102 (448)
.+++.|.+.+..+...++++.. ...+.|+ +-+|++.+++++.+.+ .. .. -..++
T Consensus 216 pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tRpk 295 (698)
T KOG2340|consen 216 PLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTRPK 295 (698)
T ss_pred cchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCCce
Confidence 6899999999999999988765 3334454 5678888888874311 00 00 12689
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhcCCCc-eE-E-------EEEcC--------CCchHhH---------------------
Q 013176 103 VLVLAPTRELAVQIQEEALKFGSRAGI-RS-T-------CIYGG--------APKGPQI--------------------- 144 (448)
Q Consensus 103 vlil~P~~~L~~q~~~~~~~~~~~~~~-~~-~-------~~~~~--------~~~~~~~--------------------- 144 (448)
|||+||+++-|-.+...+..+....+- +. + .-+++ .+..+..
T Consensus 296 VLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ftkK 375 (698)
T KOG2340|consen 296 VLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFTKK 375 (698)
T ss_pred EEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHHHH
Confidence 999999999999999888776322110 10 0 01111 0000000
Q ss_pred --HHH--hcCCcEEEEccHHHHHHHHcc------ccCCCCccEEEEecccccccCCCHHHHHHHHHHcC---C-------
Q 013176 145 --RDL--RRGVEIVIATPGRLIDMLEAQ------HTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIR---P------- 204 (448)
Q Consensus 145 --~~~--~~~~~iiv~T~~~l~~~~~~~------~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~---~------- 204 (448)
..+ ....||+||+|=-|--++... .-.++++.++|||-+|.++... ++.+..++..+. .
T Consensus 376 tikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QN-wEhl~~ifdHLn~~P~k~h~~Df 454 (698)
T KOG2340|consen 376 TIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQN-WEHLLHIFDHLNLQPSKQHDVDF 454 (698)
T ss_pred HHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhh-HHHHHHHHHHhhcCcccccCCCh
Confidence 011 124799999997775555422 1246778899999999876543 445555544432 1
Q ss_pred --------------CcceEEEeccCchHHHHHHHHHcCCCeEEEeCCccccc------ccCcceE---EEEecchh-HHH
Q 013176 205 --------------DRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKA------NQSINQV---VEVVTEAE-KYN 260 (448)
Q Consensus 205 --------------~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~---~~~~~~~~-~~~ 260 (448)
-+|.+++|+--.+....+....+.+.........-... .-.+.+. +...+-.. .-.
T Consensus 455 SRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~D~ 534 (698)
T KOG2340|consen 455 SRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIETPDA 534 (698)
T ss_pred hheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccCchH
Confidence 12666677766666666666555544332221111000 0001111 11111000 001
Q ss_pred HHHHHHHhhhc------CCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccc--
Q 013176 261 RLIKLLKEVMD------GSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVA-- 332 (448)
Q Consensus 261 ~l~~~l~~~~~------~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~-- 332 (448)
...-+...+.+ ...+|||.++.-+--.+-.+++++.+....++.-.+...-...-+.|..|...||+-|.-+
T Consensus 535 RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~hf 614 (698)
T KOG2340|consen 535 RFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAHF 614 (698)
T ss_pred HHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhhh
Confidence 11112222221 2357999999999999999999988877777777777777777788999999999999544
Q ss_pred cCCCCCCCccEEEEcCCCCChhhhh---hcccccCCCC----CCceEEEEecCCChHHHHHHH
Q 013176 333 ARGLDVKDIKCVVNYDFPTSLEDYV---HRIGRTGRAG----ARGTAFTFFTHSNAKFARDLI 388 (448)
Q Consensus 333 ~~Gidi~~~~~Vi~~~~p~s~~~~~---Q~~GR~~R~g----~~g~~~~~~~~~~~~~~~~l~ 388 (448)
-+-.++.+++.||+|.+|..|.-|- .+.+|+.-.| ..-.|.+++++.+.--++.+.
T Consensus 615 frR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~iv 677 (698)
T KOG2340|consen 615 FRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENIV 677 (698)
T ss_pred hhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHhh
Confidence 4678899999999999999887654 4555554333 234778888887776555543
No 169
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=99.10 E-value=2.7e-09 Score=94.52 Aligned_cols=131 Identities=27% Similarity=0.315 Sum_probs=97.5
Q ss_pred HCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013176 44 KLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (448)
Q Consensus 44 ~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~ 123 (448)
..|+ .|++.|.-++-.+..| .++...||-|||++..+++...... +..|-|++.+..||..-.+++..+
T Consensus 73 ~~g~-~p~~vQll~~l~L~~G--~laEm~TGEGKTli~~l~a~~~AL~--------G~~V~vvT~NdyLA~RD~~~~~~~ 141 (266)
T PF07517_consen 73 TLGL-RPYDVQLLGALALHKG--RLAEMKTGEGKTLIAALPAALNALQ--------GKGVHVVTSNDYLAKRDAEEMRPF 141 (266)
T ss_dssp HTS-----HHHHHHHHHHHTT--SEEEESTTSHHHHHHHHHHHHHHTT--------SS-EEEEESSHHHHHHHHHHHHHH
T ss_pred HcCC-cccHHHHhhhhhcccc--eeEEecCCCCcHHHHHHHHHHHHHh--------cCCcEEEeccHHHhhccHHHHHHH
Confidence 4677 8999999888777665 4899999999999998888777665 667999999999999999999999
Q ss_pred hcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHH-HHHHccc------cCCCCccEEEEecccccc
Q 013176 124 GSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLI-DMLEAQH------TNLRRVTYLVLDEADRML 187 (448)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~-~~~~~~~------~~~~~~~~iIvDE~h~~~ 187 (448)
...+++++..+..+.+..+....+ .++|+++|...|. +++.... ...+.+.++||||+|.++
T Consensus 142 y~~LGlsv~~~~~~~~~~~r~~~Y--~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 142 YEFLGLSVGIITSDMSSEERREAY--AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HHHTT--EEEEETTTEHHHHHHHH--HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HHHhhhccccCccccCHHHHHHHH--hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 999999999999887754433333 3579999998874 3343221 124678999999999765
No 170
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=99.01 E-value=7.9e-09 Score=100.27 Aligned_cols=117 Identities=17% Similarity=0.308 Sum_probs=96.3
Q ss_pred CCcEEEEecchhHHHHHHHHHHhCCCC------------------eEEEcCCCCHHHHHHHHHHHhcCC---CCEEEEec
Q 013176 272 GSRILIFTETKKGCDQVTRQLRMDGWP------------------ALSIHGDKNQSERDWVLAEFRSGR---SPIMTATD 330 (448)
Q Consensus 272 ~~k~lVf~~~~~~~~~l~~~L~~~~~~------------------~~~~~~~~~~~~r~~~~~~f~~g~---~~vLv~T~ 330 (448)
+.++|||..+......+.+.|.+..++ ...+.|..+..+|++.+++|++.. .-+++.|.
T Consensus 719 g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstr 798 (1387)
T KOG1016|consen 719 GEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTR 798 (1387)
T ss_pred CceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhc
Confidence 568999999999888888888764322 336788899999999999998642 35788899
Q ss_pred cccCCCCCCCccEEEEcCCCCChhhhhhcccccCCCCCCceEEEEecCCChHHHHHHH
Q 013176 331 VAARGLDVKDIKCVVNYDFPTSLEDYVHRIGRTGRAGARGTAFTFFTHSNAKFARDLI 388 (448)
Q Consensus 331 ~~~~Gidi~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~ 388 (448)
...-|||+-..+.+|+||.-|++..-.|.+.|+-|.|+...|+++-...+...-++|.
T Consensus 799 ag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkIy 856 (1387)
T KOG1016|consen 799 AGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKIY 856 (1387)
T ss_pred cccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHHH
Confidence 9999999988889999999999999999999999999999998887666555444443
No 171
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=98.92 E-value=1e-08 Score=101.12 Aligned_cols=309 Identities=18% Similarity=0.222 Sum_probs=176.7
Q ss_pred HHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHH-----hhcCCC
Q 013176 54 QAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALK-----FGSRAG 128 (448)
Q Consensus 54 Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~-----~~~~~~ 128 (448)
-.+++..+..++-+++.+.||.|||.-+.--+|..+..... ..-..+.+--|++..+.-+.+.+.+ .+...+
T Consensus 383 ~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~---g~~~na~v~qprrisaisiaerva~er~e~~g~tvg 459 (1282)
T KOG0921|consen 383 RSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSN---GASFNAVVSQPRRISAISLAERVANERGEEVGETCG 459 (1282)
T ss_pred HHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccc---cccccceeccccccchHHHHHHHHHhhHHhhccccc
Confidence 34566667777788999999999999888888887766432 1233467777877766666655533 222211
Q ss_pred ceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCC-CHHHHHHHHHHcCCCcc
Q 013176 129 IRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMG-FEPQIRKIVTQIRPDRQ 207 (448)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~-~~~~~~~~~~~~~~~~~ 207 (448)
..+. ..+..+ ..-.-|++||.+-+++.+++. +..++++|+||.|...-.+ |...+.+=+....+..+
T Consensus 460 y~vR-f~Sa~p--------rpyg~i~fctvgvllr~~e~g---lrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~ 527 (1282)
T KOG0921|consen 460 YNVR-FDSATP--------RPYGSIMFCTVGVLLRMMENG---LRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLR 527 (1282)
T ss_pred cccc-cccccc--------ccccceeeeccchhhhhhhhc---ccccccccchhhhhhccchHHHHHHHHhhhccchhhh
Confidence 1111 011110 111358899999998887765 4457799999999754322 22222111112224455
Q ss_pred eEEEeccCchHH--------------------HHHHHHHcCCCeEEEeCCcc----------cccccC--cceEEEEe--
Q 013176 208 TLYWSATWPREV--------------------ETLARQFLRNPYKVIIGSLE----------LKANQS--INQVVEVV-- 253 (448)
Q Consensus 208 ~v~~SAT~~~~~--------------------~~~~~~~~~~~~~~~~~~~~----------~~~~~~--~~~~~~~~-- 253 (448)
.++||||+..+. ..+....+..+......... ...... -+..-..+
T Consensus 528 v~lmsatIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd 607 (1282)
T KOG0921|consen 528 VVLMSATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDP 607 (1282)
T ss_pred hhhhhcccchhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccCh
Confidence 566666654321 11111111111111000000 000000 00000000
Q ss_pred -------------cchh----HHHHHHHHHHhhhcCCcEEEEecchhHHHHHHHHHHhC-------CCCeEEEcCCCCHH
Q 013176 254 -------------TEAE----KYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMD-------GWPALSIHGDKNQS 309 (448)
Q Consensus 254 -------------~~~~----~~~~l~~~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~-------~~~~~~~~~~~~~~ 309 (448)
.+.+ ..+.+...+....-.+-++||.+--.....|...|... ..++.-.|+.....
T Consensus 608 ~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~ 687 (1282)
T KOG0921|consen 608 SYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQ 687 (1282)
T ss_pred hhcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccH
Confidence 0000 11122222222112457899999988888888877543 34567778888888
Q ss_pred HHHHHHHHHhcCCCCEEEEeccccCCCCCCCccEEEEcCCC------------------CChhhhhhcccccCCCCCCce
Q 013176 310 ERDWVLAEFRSGRSPIMTATDVAARGLDVKDIKCVVNYDFP------------------TSLEDYVHRIGRTGRAGARGT 371 (448)
Q Consensus 310 ~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~Vi~~~~p------------------~s~~~~~Q~~GR~~R~g~~g~ 371 (448)
+..++.+....|..++++.|.+.+..+.+-++..||..+.. .+.....|+.||++|. ++|.
T Consensus 688 eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~ 766 (1282)
T KOG0921|consen 688 EQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGF 766 (1282)
T ss_pred hhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccc
Confidence 88888888888999999999999998888776666644421 2556789999999998 6788
Q ss_pred EEEEecC
Q 013176 372 AFTFFTH 378 (448)
Q Consensus 372 ~~~~~~~ 378 (448)
|..+++.
T Consensus 767 ~f~lcs~ 773 (1282)
T KOG0921|consen 767 CFHLCSR 773 (1282)
T ss_pred cccccHH
Confidence 8777653
No 172
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.85 E-value=4.7e-08 Score=86.83 Aligned_cols=170 Identities=15% Similarity=0.152 Sum_probs=109.3
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHhHHHHhhc----------CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCce
Q 013176 33 NFPDYCLEVIAKLGFVEPTPIQAQGWPMALK----------GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPI 102 (448)
Q Consensus 33 ~l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~~----------~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~ 102 (448)
.|++.++.. | .++.-|.|++-...+ +..+++-..||.||--...-.++..+.+- .++
T Consensus 27 ~lp~~~~~~----g--~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~G-------r~r 93 (303)
T PF13872_consen 27 HLPEEVIDS----G--LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRG-------RKR 93 (303)
T ss_pred CCCHHHHhc----c--cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcC-------CCc
Confidence 566544432 2 478889988866552 34678889999999877665566666552 446
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccc---cCC-------
Q 013176 103 VLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQH---TNL------- 172 (448)
Q Consensus 103 vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~---~~~------- 172 (448)
.|++..+..|..+..+.++.++.. .+.+..+..-... . .......|+++|+..|........ ..+
T Consensus 94 ~vwvS~s~dL~~Da~RDl~DIG~~-~i~v~~l~~~~~~-~---~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~ 168 (303)
T PF13872_consen 94 AVWVSVSNDLKYDAERDLRDIGAD-NIPVHPLNKFKYG-D---IIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWC 168 (303)
T ss_pred eEEEECChhhhhHHHHHHHHhCCC-cccceechhhccC-c---CCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHH
Confidence 899999999999999999987654 3443333221100 0 012245699999999876643211 110
Q ss_pred -CCc-cEEEEecccccccCCC--------HHHHHHHHHHcCCCcceEEEeccCchHHHH
Q 013176 173 -RRV-TYLVLDEADRMLDMGF--------EPQIRKIVTQIRPDRQTLYWSATWPREVET 221 (448)
Q Consensus 173 -~~~-~~iIvDE~h~~~~~~~--------~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~ 221 (448)
.++ .+|||||||...+... ...+..+...+ ++.+++++|||...+..+
T Consensus 169 g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~L-P~ARvvY~SATgasep~N 226 (303)
T PF13872_consen 169 GEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRL-PNARVVYASATGASEPRN 226 (303)
T ss_pred hcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhC-CCCcEEEecccccCCCce
Confidence 122 5899999998766432 13444455555 677799999997654443
No 173
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.81 E-value=3.4e-09 Score=106.30 Aligned_cols=260 Identities=20% Similarity=0.221 Sum_probs=157.6
Q ss_pred CCcHHHHhHHHHhhcC-CcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCC
Q 013176 49 EPTPIQAQGWPMALKG-RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRA 127 (448)
Q Consensus 49 ~~~~~Q~~~i~~~~~~-~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~ 127 (448)
...|.|...+.....- .++++-+|||+|||.+|.++++..+...+ ..++++++|-++|+..-.+.+.+.....
T Consensus 927 ~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p------~~kvvyIap~kalvker~~Dw~~r~~~~ 1000 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYP------GSKVVYIAPDKALVKERSDDWSKRDELP 1000 (1230)
T ss_pred ccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCC------CccEEEEcCCchhhcccccchhhhcccC
Confidence 3566777766665543 47888999999999999999988776653 5789999999999988888887655445
Q ss_pred CceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHc--cccCCCCccEEEEecccccccCCCHHHHHHHHH-----
Q 013176 128 GIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEA--QHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVT----- 200 (448)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~--~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~----- 200 (448)
+++++.+.|+...+.. -...++++|+||++...+..+ .+..+.+++.+|+||.|.+.+. +++.+..+..
T Consensus 1001 g~k~ie~tgd~~pd~~---~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~-rgPVle~ivsr~n~~ 1076 (1230)
T KOG0952|consen 1001 GIKVIELTGDVTPDVK---AVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED-RGPVLEVIVSRMNYI 1076 (1230)
T ss_pred CceeEeccCccCCChh---heecCceEEcccccccCccccccchhhhccccceeecccccccCC-CcceEEEEeeccccC
Confidence 8899999888766521 223578999999999877763 3446788999999999976543 3333332221
Q ss_pred --HcCCCcceEEEeccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceEEEEe-------cchhHHHHHHHHHHhhhc
Q 013176 201 --QIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVV-------TEAEKYNRLIKLLKEVMD 271 (448)
Q Consensus 201 --~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~l~~~~~ 271 (448)
...+..+++.+|--+. ....+. .+++........ ....+......+... ....+.......++...+
T Consensus 1077 s~~t~~~vr~~glsta~~-na~dla-~wl~~~~~~nf~--~svrpvp~~~~i~gfp~~~~cprm~smnkpa~qaik~~sp 1152 (1230)
T KOG0952|consen 1077 SSQTEEPVRYLGLSTALA-NANDLA-DWLNIKDMYNFR--PSVRPVPLEVHIDGFPGQHYCPRMMSMNKPAFQAIKTHSP 1152 (1230)
T ss_pred ccccCcchhhhhHhhhhh-ccHHHH-HHhCCCCcCCCC--cccccCCceEeecCCCchhcchhhhhcccHHHHHHhcCCC
Confidence 1223344454443322 222333 333322221110 111111111111111 112233455666777778
Q ss_pred CCcEEEEecchhHHHH----HHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCC
Q 013176 272 GSRILIFTETKKGCDQ----VTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSP 324 (448)
Q Consensus 272 ~~k~lVf~~~~~~~~~----l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 324 (448)
..+++||+.++..... +...+....-+...++.+ ..+-+.++...++...+
T Consensus 1153 ~~p~lifv~srrqtrlta~~li~~~~~~~~p~~fl~~d--e~e~e~~~~~~~d~~Lk 1207 (1230)
T KOG0952|consen 1153 IKPVLIFVSSRRQTRLTALDLIASCATEDNPKQFLNMD--ELELEIIMSKVRDTNLK 1207 (1230)
T ss_pred CCceEEEeecccccccchHhHHhhccCCCCchhccCCC--HHHHHHHHHHhcccchh
Confidence 8899999988775443 333333333344444443 66666666666654443
No 174
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=98.75 E-value=3.4e-05 Score=75.10 Aligned_cols=120 Identities=18% Similarity=0.245 Sum_probs=79.1
Q ss_pred hhHHHHHHHHHHhhhc--CCcEEEEecchhHHHHHHHHHHhCCC-------CeEEEcCCCCHHHHHHHHHHHh----cCC
Q 013176 256 AEKYNRLIKLLKEVMD--GSRILIFTETKKGCDQVTRQLRMDGW-------PALSIHGDKNQSERDWVLAEFR----SGR 322 (448)
Q Consensus 256 ~~~~~~l~~~l~~~~~--~~k~lVf~~~~~~~~~l~~~L~~~~~-------~~~~~~~~~~~~~r~~~~~~f~----~g~ 322 (448)
+..+..|...+..... .+-+++|+++.+....+.+..++.|+ +.+++....+ -..+++.|. .|.
T Consensus 611 ~~~l~~l~~~~~nL~~~VPgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~ 687 (821)
T KOG1133|consen 611 PEMIKDLGSSISNLSNAVPGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGR 687 (821)
T ss_pred hHHHHHHHHHHHHHHhhCCCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCC
Confidence 3445555555544332 24599999999988888888875433 2333333333 234566664 355
Q ss_pred CCEEEEe--ccccCCCCCCC--ccEEEEcCCCCC--------------------------------hhhhhhcccccCCC
Q 013176 323 SPIMTAT--DVAARGLDVKD--IKCVVNYDFPTS--------------------------------LEDYVHRIGRTGRA 366 (448)
Q Consensus 323 ~~vLv~T--~~~~~Gidi~~--~~~Vi~~~~p~s--------------------------------~~~~~Q~~GR~~R~ 366 (448)
-.+|++. .-+++|||+.+ +++||..++|.. +...-|.+|||.|.
T Consensus 688 GaiLlaVVGGKlSEGINF~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH 767 (821)
T KOG1133|consen 688 GAILLAVVGGKLSEGINFSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRH 767 (821)
T ss_pred CeEEEEEeccccccccccccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhh
Confidence 5677777 78899999987 888998888741 11355999999998
Q ss_pred CCCceEEEEecC
Q 013176 367 GARGTAFTFFTH 378 (448)
Q Consensus 367 g~~g~~~~~~~~ 378 (448)
.++--++++++.
T Consensus 768 ~~DYA~i~LlD~ 779 (821)
T KOG1133|consen 768 RKDYASIYLLDK 779 (821)
T ss_pred hccceeEEEehh
Confidence 666566666664
No 175
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.74 E-value=4e-08 Score=87.61 Aligned_cols=73 Identities=19% Similarity=0.225 Sum_probs=50.6
Q ss_pred CCcHHHHhHHHHhhcCCc-EEEEcCCCChHHHHHHHHHHHHhhcC-CCccCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013176 49 EPTPIQAQGWPMALKGRD-LIGIAETGSGKTLSYLLPAFVHVSAQ-PRLVQGEGPIVLVLAPTRELAVQIQEEALK 122 (448)
Q Consensus 49 ~~~~~Q~~~i~~~~~~~~-~lv~~~tGsGKT~~~~l~~l~~~~~~-~~~~~~~~~~vlil~P~~~L~~q~~~~~~~ 122 (448)
.+++.|.+|+..++.... .+|.||+|+|||.+.. .++..+... .......+.++++++|+..-++++.+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~-~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLA-SIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHH-HHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHH-HHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 368899999999999988 8999999999996533 444444110 000112377899999999999999999887
No 176
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.73 E-value=5.2e-07 Score=92.45 Aligned_cols=68 Identities=18% Similarity=0.051 Sum_probs=57.5
Q ss_pred CCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCCCHHHHHHHHHHcCCCcceEEEeccCch
Q 013176 150 GVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPR 217 (448)
Q Consensus 150 ~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~ 217 (448)
...|+++||..|..-+..+...+..++.|||||||++........+.++.+.-.+...+.+|||+|..
T Consensus 7 ~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~~ 74 (814)
T TIGR00596 7 EGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPEA 74 (814)
T ss_pred cCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCcc
Confidence 35799999999998888889999999999999999998776666777777776677788999998753
No 177
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.72 E-value=3.4e-08 Score=82.51 Aligned_cols=106 Identities=19% Similarity=0.274 Sum_probs=74.8
Q ss_pred CCcEEEEecchhHHHHHHHHHHhCCC--CeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEec--cccCCCCCCC--ccEEE
Q 013176 272 GSRILIFTETKKGCDQVTRQLRMDGW--PALSIHGDKNQSERDWVLAEFRSGRSPIMTATD--VAARGLDVKD--IKCVV 345 (448)
Q Consensus 272 ~~k~lVf~~~~~~~~~l~~~L~~~~~--~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~--~~~~Gidi~~--~~~Vi 345 (448)
.+++|||+++....+.+.+.+++... ...++.. ...++..+++.|+.++-.||+++. .+.+|+|+|+ ++.||
T Consensus 9 ~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~vi 86 (167)
T PF13307_consen 9 PGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAVI 86 (167)
T ss_dssp SSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhheee
Confidence 47899999999999999999987531 1222332 355788899999999889999998 9999999996 88899
Q ss_pred EcCCCC-Ch-----------------------------hhhhhcccccCCCCCCceEEEEecCC
Q 013176 346 NYDFPT-SL-----------------------------EDYVHRIGRTGRAGARGTAFTFFTHS 379 (448)
Q Consensus 346 ~~~~p~-s~-----------------------------~~~~Q~~GR~~R~g~~g~~~~~~~~~ 379 (448)
+..+|. ++ ....|.+||+.|..++-.++++++..
T Consensus 87 i~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~R 150 (167)
T PF13307_consen 87 IVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDSR 150 (167)
T ss_dssp EES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESGG
T ss_pred ecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcCc
Confidence 999884 11 12569999999997776667777764
No 178
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.68 E-value=5e-07 Score=92.77 Aligned_cols=73 Identities=12% Similarity=0.122 Sum_probs=58.1
Q ss_pred CCCEEEEeccccCCCCCCCccEEEEcCCCCChhhhhhcccccCCCCC--C-------c-eEEEEecCCChHHHHHHHHHH
Q 013176 322 RSPIMTATDVAARGLDVKDIKCVVNYDFPTSLEDYVHRIGRTGRAGA--R-------G-TAFTFFTHSNAKFARDLIKIL 391 (448)
Q Consensus 322 ~~~vLv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~--~-------g-~~~~~~~~~~~~~~~~l~~~~ 391 (448)
..+.|++.+++.+|.|.|++-.+..+....|...-.|.+||.-|.-- . . .-.++.+.....+...|++-+
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~EI 580 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGEI 580 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHHH
Confidence 57899999999999999999999999988888999999999988421 1 1 234555666777888888777
Q ss_pred HHh
Q 013176 392 QEA 394 (448)
Q Consensus 392 ~~~ 394 (448)
.+.
T Consensus 581 ~~~ 583 (986)
T PRK15483 581 NSD 583 (986)
T ss_pred Hhh
Confidence 665
No 179
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.67 E-value=1.4e-07 Score=81.14 Aligned_cols=123 Identities=20% Similarity=0.193 Sum_probs=73.6
Q ss_pred CCcHHHHhHHHHhhcCC--cEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcC
Q 013176 49 EPTPIQAQGWPMALKGR--DLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSR 126 (448)
Q Consensus 49 ~~~~~Q~~~i~~~~~~~--~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~ 126 (448)
.|++-|++++..++... -.++.++.|+|||.+ +..+...+... +.++++++||...+.++.+...
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~~~~-------g~~v~~~apT~~Aa~~L~~~~~----- 67 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEALEAA-------GKRVIGLAPTNKAAKELREKTG----- 67 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHHHHT-------T--EEEEESSHHHHHHHHHHHT-----
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHHHhC-------CCeEEEECCcHHHHHHHHHhhC-----
Confidence 36889999999997543 466779999999975 44454455442 5779999999988777555521
Q ss_pred CCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHcccc----CCCCccEEEEecccccccCCCHHHHHHHHHHc
Q 013176 127 AGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHT----NLRRVTYLVLDEADRMLDMGFEPQIRKIVTQI 202 (448)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~----~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~ 202 (448)
+ -..|.++++........ .+...++|||||+-.+. ...+..++...
T Consensus 68 --~------------------------~a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~----~~~~~~ll~~~ 117 (196)
T PF13604_consen 68 --I------------------------EAQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVD----SRQLARLLRLA 117 (196)
T ss_dssp --S-------------------------EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-B----HHHHHHHHHHS
T ss_pred --c------------------------chhhHHHHHhcCCcccccccccCCcccEEEEecccccC----HHHHHHHHHHH
Confidence 1 12233333222221111 14556899999999873 45666677766
Q ss_pred CC-CcceEEEecc
Q 013176 203 RP-DRQTLYWSAT 214 (448)
Q Consensus 203 ~~-~~~~v~~SAT 214 (448)
.. ..+++++--+
T Consensus 118 ~~~~~klilvGD~ 130 (196)
T PF13604_consen 118 KKSGAKLILVGDP 130 (196)
T ss_dssp -T-T-EEEEEE-T
T ss_pred HhcCCEEEEECCc
Confidence 55 5666666554
No 180
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.66 E-value=1.8e-07 Score=79.58 Aligned_cols=145 Identities=16% Similarity=0.169 Sum_probs=76.3
Q ss_pred CCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHH-------HHHHH
Q 013176 49 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQI-------QEEAL 121 (448)
Q Consensus 49 ~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~-------~~~~~ 121 (448)
-.++.|..++.++...+-+++.+|.|+|||+.++..++..+... .-.+++++-|..+..+++ .+.+.
T Consensus 4 p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g------~~~kiii~Rp~v~~~~~lGflpG~~~eK~~ 77 (205)
T PF02562_consen 4 PKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEG------EYDKIIITRPPVEAGEDLGFLPGDLEEKME 77 (205)
T ss_dssp --SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTT------S-SEEEEEE-S--TT----SS---------
T ss_pred CCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhC------CCcEEEEEecCCCCccccccCCCCHHHHHH
Confidence 45789999999999888889999999999999998888887663 255788888866431111 11111
Q ss_pred HhhcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCCCHHHHHHHHHH
Q 013176 122 KFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQ 201 (448)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~ 201 (448)
-+.... ...............+.....|-+.++..+ +. ..+. -.+||+|||+.+ ....++.++.+
T Consensus 78 p~~~p~----~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~i-----RG-rt~~-~~~iIvDEaQN~----t~~~~k~ilTR 142 (205)
T PF02562_consen 78 PYLRPI----YDALEELFGKEKLEELIQNGKIEIEPLAFI-----RG-RTFD-NAFIIVDEAQNL----TPEELKMILTR 142 (205)
T ss_dssp TTTHHH----HHHHTTTS-TTCHHHHHHTTSEEEEEGGGG-----TT---B--SEEEEE-SGGG------HHHHHHHHTT
T ss_pred HHHHHH----HHHHHHHhChHhHHHHhhcCeEEEEehhhh-----cC-cccc-ceEEEEecccCC----CHHHHHHHHcc
Confidence 100000 000000001122233334445666654332 11 1222 379999999987 46788899999
Q ss_pred cCCCcceEEEecc
Q 013176 202 IRPDRQTLYWSAT 214 (448)
Q Consensus 202 ~~~~~~~v~~SAT 214 (448)
+..+.+++++.-.
T Consensus 143 ~g~~skii~~GD~ 155 (205)
T PF02562_consen 143 IGEGSKIIITGDP 155 (205)
T ss_dssp B-TT-EEEEEE--
T ss_pred cCCCcEEEEecCc
Confidence 9888888876554
No 181
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=98.57 E-value=1.8e-06 Score=74.14 Aligned_cols=129 Identities=21% Similarity=0.311 Sum_probs=86.7
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHhHHHHhhcC---CcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceE
Q 013176 27 RIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKG---RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIV 103 (448)
Q Consensus 27 ~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~~~---~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~v 103 (448)
.+|+....|++++=.+. .++ -+|+.|.++...+.+. .|.+..+.+|.|||.+ ++|++..+... ...-+
T Consensus 3 ~~w~p~~~P~wLl~E~e-~~i-liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAd------g~~Lv 73 (229)
T PF12340_consen 3 RNWDPMEYPDWLLFEIE-SNI-LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALAD------GSRLV 73 (229)
T ss_pred CCCCchhChHHHHHHHH-cCc-eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcC------CCcEE
Confidence 46777777777775554 346 7899999999988864 6888999999999987 67777766553 24567
Q ss_pred EEEcCcHHHHHHHHHHHHH-hhcCCCceEEEE--EcCCCch-H---hH----HHHhcCCcEEEEccHHHHHHH
Q 013176 104 LVLAPTRELAVQIQEEALK-FGSRAGIRSTCI--YGGAPKG-P---QI----RDLRRGVEIVIATPGRLIDML 165 (448)
Q Consensus 104 lil~P~~~L~~q~~~~~~~-~~~~~~~~~~~~--~~~~~~~-~---~~----~~~~~~~~iiv~T~~~l~~~~ 165 (448)
.++|| ++|.+|..+.+.. ++.-.+-++..+ .-..... . .. ........|+++||+.++.+.
T Consensus 74 rviVp-k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~ 145 (229)
T PF12340_consen 74 RVIVP-KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFK 145 (229)
T ss_pred EEEcC-HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHH
Confidence 78888 7899999998874 433333333222 1111111 1 11 223345679999999986654
No 182
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.56 E-value=1.2e-05 Score=80.00 Aligned_cols=74 Identities=15% Similarity=0.182 Sum_probs=57.7
Q ss_pred CCCCEEEEeccccCCCCCCCccEEEEcCCCCChhhhhhcccccCCCC--CCc-----------eEEEEecCCChHHHHHH
Q 013176 321 GRSPIMTATDVAARGLDVKDIKCVVNYDFPTSLEDYVHRIGRTGRAG--ARG-----------TAFTFFTHSNAKFARDL 387 (448)
Q Consensus 321 g~~~vLv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g--~~g-----------~~~~~~~~~~~~~~~~l 387 (448)
...+.|++..++-+|.|-|++=.+.-+....|..+=+|.+||.-|.. +.| .-.+++...++.+...|
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~L 561 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKAL 561 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHH
Confidence 46789999999999999999999999999999999999999999942 111 22456666677777777
Q ss_pred HHHHHHh
Q 013176 388 IKILQEA 394 (448)
Q Consensus 388 ~~~~~~~ 394 (448)
.+-+...
T Consensus 562 qkEI~~~ 568 (985)
T COG3587 562 QKEINDE 568 (985)
T ss_pred HHHHHHh
Confidence 6655433
No 183
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.54 E-value=5.1e-07 Score=86.85 Aligned_cols=85 Identities=20% Similarity=0.199 Sum_probs=68.3
Q ss_pred HHHHCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHH
Q 013176 41 VIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEA 120 (448)
Q Consensus 41 ~~~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~ 120 (448)
.+...++..++.-|..|+.+++.+.-.||.+|+|+|||.+.. .++.++.++ ....||+.+|+..-++|+++.+
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa-~IVyhl~~~------~~~~VLvcApSNiAVDqLaeKI 474 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSA-TIVYHLARQ------HAGPVLVCAPSNIAVDQLAEKI 474 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhH-HHHHHHHHh------cCCceEEEcccchhHHHHHHHH
Confidence 444567778999999999999999999999999999998744 444444443 2667999999999999999999
Q ss_pred HHhhcCCCceEEEEEc
Q 013176 121 LKFGSRAGIRSTCIYG 136 (448)
Q Consensus 121 ~~~~~~~~~~~~~~~~ 136 (448)
.+. +++++.+..
T Consensus 475 h~t----gLKVvRl~a 486 (935)
T KOG1802|consen 475 HKT----GLKVVRLCA 486 (935)
T ss_pred Hhc----CceEeeeeh
Confidence 884 577777655
No 184
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=98.46 E-value=4.5e-05 Score=77.34 Aligned_cols=66 Identities=21% Similarity=0.210 Sum_probs=52.9
Q ss_pred CCcHHHHhHHHHhhcC-CcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013176 49 EPTPIQAQGWPMALKG-RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALK 122 (448)
Q Consensus 49 ~~~~~Q~~~i~~~~~~-~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~ 122 (448)
.+++.|.+|+..++.. ...+|.||+|+|||.+.. .++.++... +.+|++++||..-+.++.+.+..
T Consensus 157 ~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~-~ii~~~~~~-------g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 157 NLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLV-ELIRQLVKR-------GLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHH-HHHHHHHHc-------CCCEEEEcCcHHHHHHHHHHHHh
Confidence 6799999999998876 577888999999997644 334443332 55799999999999999888876
No 185
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=98.46 E-value=1.1e-06 Score=87.32 Aligned_cols=140 Identities=21% Similarity=0.272 Sum_probs=89.9
Q ss_pred CCCCCCcHHHHhHHHHhhc----CCcEEEEcCCCChHHHHHHHHHHHHhhcCC-----------C--------c------
Q 013176 45 LGFVEPTPIQAQGWPMALK----GRDLIGIAETGSGKTLSYLLPAFVHVSAQP-----------R--------L------ 95 (448)
Q Consensus 45 ~~~~~~~~~Q~~~i~~~~~----~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~-----------~--------~------ 95 (448)
++| +||+.|...+..++. ..+.++..|||+|||++.+...+++..... + .
T Consensus 18 fP~-qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~ 96 (945)
T KOG1132|consen 18 FPF-QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEK 96 (945)
T ss_pred ccC-CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCc
Confidence 457 899999887766654 468899999999999886654443321100 0 0
Q ss_pred ----cC-----CCCceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCC----------------------------
Q 013176 96 ----VQ-----GEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGA---------------------------- 138 (448)
Q Consensus 96 ----~~-----~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~---------------------------- 138 (448)
.. -..+++.|..-|..-..|+.+++++..-. +++..+-+..
T Consensus 97 s~e~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~--vkmtVLgSReq~Cinpev~k~~~~~~~~~~C~k~~~~~ 174 (945)
T KOG1132|consen 97 SEEAGEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYR--VKMTVLGSREQLCINPEVKKLEGNALQNHVCKKLVKSR 174 (945)
T ss_pred hhhhcCccccccCCceEEEecchHHHHHHHHHHHhhcCCC--CceEEeecchhhccCHHHhhhhcchhhhhHHHhhcccc
Confidence 00 12578888888888889999999886433 2222111100
Q ss_pred ---------------------CchHh---------------HHHHhcCCcEEEEccHHHHHHHHccc--cCCCCccEEEE
Q 013176 139 ---------------------PKGPQ---------------IRDLRRGVEIVIATPGRLIDMLEAQH--TNLRRVTYLVL 180 (448)
Q Consensus 139 ---------------------~~~~~---------------~~~~~~~~~iiv~T~~~l~~~~~~~~--~~~~~~~~iIv 180 (448)
..-++ .+.+...++||+|-+.+|++-..+.. +++.+ ++|||
T Consensus 175 ~C~f~~~~~~~sl~~~l~~~i~DIEDLVk~Gk~~~~CPYfaSR~l~edAdIIF~PYnYLiDp~iR~~~~v~Lkn-sIVIf 253 (945)
T KOG1132|consen 175 SCHFYKIVEEKSLQPRLHDEIFDIEDLVKIGKKSRGCPYFASRELKEDADIIFCPYNYLIDPKIRRSHKVDLKN-SIVIF 253 (945)
T ss_pred cccccccccccccccccCCCcccHHHHHHhCccCcCCcchhhhhhcccCcEEEechhhhcCHhhhccccccccc-cEEEE
Confidence 00000 13444568999999999987665554 44543 68999
Q ss_pred eccccccc
Q 013176 181 DEADRMLD 188 (448)
Q Consensus 181 DE~h~~~~ 188 (448)
||||.+.+
T Consensus 254 DEAHNiEd 261 (945)
T KOG1132|consen 254 DEAHNIED 261 (945)
T ss_pred eccccHHH
Confidence 99998653
No 186
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=98.42 E-value=3.7e-06 Score=84.37 Aligned_cols=101 Identities=19% Similarity=0.191 Sum_probs=88.9
Q ss_pred cEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCC-CCE-EEEeccccCCCCCCCccEEEEcCCCC
Q 013176 274 RILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGR-SPI-MTATDVAARGLDVKDIKCVVNYDFPT 351 (448)
Q Consensus 274 k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~-~~v-Lv~T~~~~~Gidi~~~~~Vi~~~~p~ 351 (448)
+++||+.-..-+..+...|...++....+.|.|+...|.+.+..|.++. ..| +++..+...|+|+-.+.+|+..|+=|
T Consensus 541 kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~w 620 (674)
T KOG1001|consen 541 KIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPWW 620 (674)
T ss_pred ceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchhc
Confidence 8999999999999888888888888889999999999999999998543 334 44668889999999999999999999
Q ss_pred ChhhhhhcccccCCCCCCceEEE
Q 013176 352 SLEDYVHRIGRTGRAGARGTAFT 374 (448)
Q Consensus 352 s~~~~~Q~~GR~~R~g~~g~~~~ 374 (448)
++....|.+-|+.|.|+...+.+
T Consensus 621 np~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 621 NPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred ChHHHHHHHHHHHHhcccceeee
Confidence 99999999999999999877754
No 187
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=98.36 E-value=6e-06 Score=82.43 Aligned_cols=143 Identities=20% Similarity=0.196 Sum_probs=89.6
Q ss_pred cHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCCce
Q 013176 51 TPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIR 130 (448)
Q Consensus 51 ~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~ 130 (448)
.++|+.|+..++.++-.++.++.|+|||.+ +..++..+...... ..+.++++++||---+..+.+.+..........
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~-v~~ll~~l~~~~~~--~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~ 223 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTT-VARLLLALVKQSPK--QGKLRIALAAPTGKAAARLAESLRKAVKNLAAA 223 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHH-HHHHHHHHHHhccc--cCCCcEEEECCcHHHHHHHHHHHHhhhcccccc
Confidence 379999999999998999999999999976 33333333322110 013579999999888887777765532222110
Q ss_pred EEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHc------cccCCCCccEEEEecccccccCCCHHHHHHHHHHcCC
Q 013176 131 STCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEA------QHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRP 204 (448)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~------~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~ 204 (448)
. .......+-..|.++|+..... ...+.-.+++|||||+-++. ...+..+++.+++
T Consensus 224 -----------~---~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd----~~l~~~ll~al~~ 285 (586)
T TIGR01447 224 -----------E---ALIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD----LPLMAKLLKALPP 285 (586)
T ss_pred -----------h---hhhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCC----HHHHHHHHHhcCC
Confidence 0 0011112235566665543221 11223357999999999763 4567778888888
Q ss_pred CcceEEEecc
Q 013176 205 DRQTLYWSAT 214 (448)
Q Consensus 205 ~~~~v~~SAT 214 (448)
..++|++.-.
T Consensus 286 ~~rlIlvGD~ 295 (586)
T TIGR01447 286 NTKLILLGDK 295 (586)
T ss_pred CCEEEEECCh
Confidence 8888876544
No 188
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=98.34 E-value=4.9e-06 Score=83.22 Aligned_cols=142 Identities=19% Similarity=0.223 Sum_probs=89.7
Q ss_pred cHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCCce
Q 013176 51 TPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIR 130 (448)
Q Consensus 51 ~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~ 130 (448)
.++|++|+...+.++-.+|.+++|+|||.+ +..++..+.+... ....+++++.||-.-+..+.+.+.......+..
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~-v~~ll~~l~~~~~---~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~ 229 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTT-VAKLLAALIQLAD---GERCRIRLAAPTGKAAARLTESLGKALRQLPLT 229 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHH-HHHHHHHHHHhcC---CCCcEEEEECCcHHHHHHHHHHHHhhhhccccc
Confidence 589999999999988899999999999976 3333333322110 123578999999988888887776533222110
Q ss_pred EEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHc------cccCCCCccEEEEecccccccCCCHHHHHHHHHHcCC
Q 013176 131 STCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEA------QHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRP 204 (448)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~------~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~ 204 (448)
.. .......-..|.++|+..... ...+.-.++++||||+-++ -...+..+++.+++
T Consensus 230 -----------~~---~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMv----d~~lm~~ll~al~~ 291 (615)
T PRK10875 230 -----------DE---QKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMV----DLPMMARLIDALPP 291 (615)
T ss_pred -----------hh---hhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhcc----cHHHHHHHHHhccc
Confidence 00 001111224455555433211 1122334689999999976 35667778888888
Q ss_pred CcceEEEecc
Q 013176 205 DRQTLYWSAT 214 (448)
Q Consensus 205 ~~~~v~~SAT 214 (448)
..++|++.-.
T Consensus 292 ~~rlIlvGD~ 301 (615)
T PRK10875 292 HARVIFLGDR 301 (615)
T ss_pred CCEEEEecch
Confidence 8888887554
No 189
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=98.32 E-value=7.8e-06 Score=84.08 Aligned_cols=130 Identities=20% Similarity=0.129 Sum_probs=81.7
Q ss_pred HHCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013176 43 AKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALK 122 (448)
Q Consensus 43 ~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~ 122 (448)
...++ .+++.|++|+..+..++-+++.+++|+|||.+ +-.++..+.... ....+++++||-.-+..+.+..
T Consensus 318 ~~~~~-~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~-l~~i~~~~~~~~-----~~~~v~l~ApTg~AA~~L~e~~-- 388 (720)
T TIGR01448 318 KKLRK-GLSEEQKQALDTAIQHKVVILTGGPGTGKTTI-TRAIIELAEELG-----GLLPVGLAAPTGRAAKRLGEVT-- 388 (720)
T ss_pred HhcCC-CCCHHHHHHHHHHHhCCeEEEECCCCCCHHHH-HHHHHHHHHHcC-----CCceEEEEeCchHHHHHHHHhc--
Confidence 34566 79999999999999888889999999999975 334444444321 0256888999977765443321
Q ss_pred hhcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHc-----cccCCCCccEEEEecccccccCCCHHHHHH
Q 013176 123 FGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEA-----QHTNLRRVTYLVLDEADRMLDMGFEPQIRK 197 (448)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~-----~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~ 197 (448)
+.. -.|.++|+..... ........++||+||++++. ...+..
T Consensus 389 -----g~~------------------------a~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaSMvd----~~~~~~ 435 (720)
T TIGR01448 389 -----GLT------------------------ASTIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESSMMD----TWLALS 435 (720)
T ss_pred -----CCc------------------------cccHHHHhhccCCccchhhhhccccCCEEEEeccccCC----HHHHHH
Confidence 111 1122222221100 00112346899999999873 345666
Q ss_pred HHHHcCCCcceEEEecc
Q 013176 198 IVTQIRPDRQTLYWSAT 214 (448)
Q Consensus 198 ~~~~~~~~~~~v~~SAT 214 (448)
+++.++...+++++.-+
T Consensus 436 Ll~~~~~~~rlilvGD~ 452 (720)
T TIGR01448 436 LLAALPDHARLLLVGDT 452 (720)
T ss_pred HHHhCCCCCEEEEECcc
Confidence 67777777888776544
No 190
>PRK10536 hypothetical protein; Provisional
Probab=98.29 E-value=1.6e-05 Score=69.76 Aligned_cols=143 Identities=13% Similarity=0.080 Sum_probs=82.0
Q ss_pred CCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHH-----------
Q 013176 45 LGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELA----------- 113 (448)
Q Consensus 45 ~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~----------- 113 (448)
.++.-.+..|..++..+.+...+++.+|+|+|||+.+...++..+... .-.++++.=|+....
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~------~~~kIiI~RP~v~~ge~LGfLPG~~~ 128 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHK------DVDRIIVTRPVLQADEDLGFLPGDIA 128 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcC------CeeEEEEeCCCCCchhhhCcCCCCHH
Confidence 345556889999999998888888889999999998777676655332 134566665653321
Q ss_pred HHHHHHHHHhhcCCCceEEEEEcCCCchHhHHHHh--cCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCCC
Q 013176 114 VQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLR--RGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGF 191 (448)
Q Consensus 114 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~ 191 (448)
+-+.-++..+.+.+.. +.+. .....+. ....|-|... .++.- . .+. -++||+||++++ .
T Consensus 129 eK~~p~~~pi~D~L~~----~~~~----~~~~~~~~~~~~~Iei~~l----~ymRG-r-tl~-~~~vIvDEaqn~----~ 189 (262)
T PRK10536 129 EKFAPYFRPVYDVLVR----RLGA----SFMQYCLRPEIGKVEIAPF----AYMRG-R-TFE-NAVVILDEAQNV----T 189 (262)
T ss_pred HHHHHHHHHHHHHHHH----HhCh----HHHHHHHHhccCcEEEecH----HHhcC-C-ccc-CCEEEEechhcC----C
Confidence 1111112221111100 0011 1122111 1233444442 22221 1 222 379999999987 3
Q ss_pred HHHHHHHHHHcCCCcceEEEe
Q 013176 192 EPQIRKIVTQIRPDRQTLYWS 212 (448)
Q Consensus 192 ~~~~~~~~~~~~~~~~~v~~S 212 (448)
...++.++..+..+.++|++.
T Consensus 190 ~~~~k~~ltR~g~~sk~v~~G 210 (262)
T PRK10536 190 AAQMKMFLTRLGENVTVIVNG 210 (262)
T ss_pred HHHHHHHHhhcCCCCEEEEeC
Confidence 577888888888888876543
No 191
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=98.19 E-value=5.6e-06 Score=79.42 Aligned_cols=65 Identities=26% Similarity=0.223 Sum_probs=52.1
Q ss_pred CCcHHHHhHHHHhhcCCc-EEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHH
Q 013176 49 EPTPIQAQGWPMALKGRD-LIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEAL 121 (448)
Q Consensus 49 ~~~~~Q~~~i~~~~~~~~-~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~ 121 (448)
.+.+-|++|+......++ .++.||+|+|||.+....+.+.+.+ +.+||+..||..-++.+.+++.
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~--------~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQ--------KKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHc--------CCeEEEEcCchHHHHHHHHHhc
Confidence 578899999998887754 5677999999998865555555544 6789999999999999888644
No 192
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=98.18 E-value=6.2e-06 Score=77.99 Aligned_cols=95 Identities=20% Similarity=0.245 Sum_probs=60.9
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHH
Q 013176 66 DLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIR 145 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (448)
-++|.|.+|||||++++ .++..+... ..+.++++++++..|...+.+.+.+-...
T Consensus 3 v~~I~G~aGTGKTvla~-~l~~~l~~~-----~~~~~~~~l~~n~~l~~~l~~~l~~~~~~------------------- 57 (352)
T PF09848_consen 3 VILITGGAGTGKTVLAL-NLAKELQNS-----EEGKKVLYLCGNHPLRNKLREQLAKKYNP------------------- 57 (352)
T ss_pred EEEEEecCCcCHHHHHH-HHHHHhhcc-----ccCCceEEEEecchHHHHHHHHHhhhccc-------------------
Confidence 36788999999998744 344444111 12667899999999998888888763200
Q ss_pred HHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEeccccccc
Q 013176 146 DLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLD 188 (448)
Q Consensus 146 ~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~ 188 (448)
......+..+..+.............+++|||||||++..
T Consensus 58 ---~~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 58 ---KLKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred ---chhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhh
Confidence 0011234444444443332234566789999999999877
No 193
>PF13245 AAA_19: Part of AAA domain
Probab=98.03 E-value=3.3e-05 Score=54.77 Aligned_cols=60 Identities=32% Similarity=0.364 Sum_probs=40.4
Q ss_pred HHHHhhcCCc-EEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHH
Q 013176 57 GWPMALKGRD-LIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEA 120 (448)
Q Consensus 57 ~i~~~~~~~~-~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~ 120 (448)
++...+.+.+ ++|.+|+|+|||...+-.+...+..... + +.++++++|++..++++.+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~---~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARAD---P-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcC---C-CCeEEEECCCHHHHHHHHHHH
Confidence 4443333444 5558999999997755444444422111 1 567999999999999988888
No 194
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=98.02 E-value=0.00014 Score=75.21 Aligned_cols=125 Identities=20% Similarity=0.153 Sum_probs=75.7
Q ss_pred CCCCCCcHHHHhHHHHhhcC-CcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013176 45 LGFVEPTPIQAQGWPMALKG-RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (448)
Q Consensus 45 ~~~~~~~~~Q~~~i~~~~~~-~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~ 123 (448)
.++ .+++.|++|+..++.+ +-+++.+++|+|||.. +-++...+... +.++++++||-.-+..+.+.
T Consensus 349 ~~~-~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtl-l~~i~~~~~~~-------g~~V~~~ApTg~Aa~~L~~~---- 415 (744)
T TIGR02768 349 QHY-RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTM-LKAAREAWEAA-------GYRVIGAALSGKAAEGLQAE---- 415 (744)
T ss_pred ccC-CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHH-HHHHHHHHHhC-------CCeEEEEeCcHHHHHHHHhc----
Confidence 445 6899999999999875 5567889999999975 33344444332 56799999987655444321
Q ss_pred hcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCCCHHHHHHHHHH-c
Q 013176 124 GSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQ-I 202 (448)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~-~ 202 (448)
.++.. .|.+++...+......+...++|||||+-++... .+..++.. .
T Consensus 416 ---~g~~a------------------------~Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~~~----~~~~Ll~~~~ 464 (744)
T TIGR02768 416 ---SGIES------------------------RTLASLEYAWANGRDLLSDKDVLVIDEAGMVGSR----QMARVLKEAE 464 (744)
T ss_pred ---cCCce------------------------eeHHHHHhhhccCcccCCCCcEEEEECcccCCHH----HHHHHHHHHH
Confidence 12211 1223332212222334556789999999977433 33444442 2
Q ss_pred CCCcceEEEec
Q 013176 203 RPDRQTLYWSA 213 (448)
Q Consensus 203 ~~~~~~v~~SA 213 (448)
....++|++.-
T Consensus 465 ~~~~kliLVGD 475 (744)
T TIGR02768 465 EAGAKVVLVGD 475 (744)
T ss_pred hcCCEEEEECC
Confidence 35666666653
No 195
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=98.01 E-value=3.7e-05 Score=61.85 Aligned_cols=74 Identities=16% Similarity=0.261 Sum_probs=54.0
Q ss_pred CCCHHHHHHHHHHHhcCC-CCEEEEeccccCCCCCCC--ccEEEEcCCCCC-----------------------------
Q 013176 305 DKNQSERDWVLAEFRSGR-SPIMTATDVAARGLDVKD--IKCVVNYDFPTS----------------------------- 352 (448)
Q Consensus 305 ~~~~~~r~~~~~~f~~g~-~~vLv~T~~~~~Gidi~~--~~~Vi~~~~p~s----------------------------- 352 (448)
..+..+...+++.|+... ..||+++..+++|+|+|+ ++.||...+|..
T Consensus 30 ~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (141)
T smart00492 30 GEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFDFVSLP 109 (141)
T ss_pred CCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchhHHHHH
Confidence 344445788899998654 369999977999999997 678998887631
Q ss_pred --hhhhhhcccccCCCCCCceEEEEecC
Q 013176 353 --LEDYVHRIGRTGRAGARGTAFTFFTH 378 (448)
Q Consensus 353 --~~~~~Q~~GR~~R~g~~g~~~~~~~~ 378 (448)
...+.|.+||+-|..++-.+++++++
T Consensus 110 ~a~~~l~Qa~GR~iR~~~D~g~i~l~D~ 137 (141)
T smart00492 110 DAMRTLAQCVGRLIRGANDYGVVVIADK 137 (141)
T ss_pred HHHHHHHHHhCccccCcCceEEEEEEec
Confidence 12366999999998766555666554
No 196
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.99 E-value=0.00014 Score=76.36 Aligned_cols=127 Identities=21% Similarity=0.156 Sum_probs=78.9
Q ss_pred HCCCCCCcHHHHhHHHHhhcCCc-EEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013176 44 KLGFVEPTPIQAQGWPMALKGRD-LIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALK 122 (448)
Q Consensus 44 ~~~~~~~~~~Q~~~i~~~~~~~~-~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~ 122 (448)
..|+ .+++-|++++..++.+.+ +++.++.|+|||.+ +-++...+... +.+++.++||-.-+..+. .
T Consensus 342 ~~g~-~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~~-------G~~V~~~ApTGkAA~~L~----e 408 (988)
T PRK13889 342 ARGL-VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEAA-------GYEVRGAALSGIAAENLE----G 408 (988)
T ss_pred hcCC-CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHHc-------CCeEEEecCcHHHHHHHh----h
Confidence 3566 799999999999998654 67779999999975 33444444432 667999999876554432 2
Q ss_pred hhcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCCCHHHHHHHHHHc
Q 013176 123 FGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQI 202 (448)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~ 202 (448)
..++. -.|..+|+.........+...++|||||+-++.. ..+..++...
T Consensus 409 ---~tGi~------------------------a~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~~----~~m~~LL~~a 457 (988)
T PRK13889 409 ---GSGIA------------------------SRTIASLEHGWGQGRDLLTSRDVLVIDEAGMVGT----RQLERVLSHA 457 (988)
T ss_pred ---ccCcc------------------------hhhHHHHHhhhcccccccccCcEEEEECcccCCH----HHHHHHHHhh
Confidence 11221 1133333222222233455678999999997643 3444555433
Q ss_pred -CCCcceEEEecc
Q 013176 203 -RPDRQTLYWSAT 214 (448)
Q Consensus 203 -~~~~~~v~~SAT 214 (448)
....++|++.-+
T Consensus 458 ~~~garvVLVGD~ 470 (988)
T PRK13889 458 ADAGAKVVLVGDP 470 (988)
T ss_pred hhCCCEEEEECCH
Confidence 456777776554
No 197
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.99 E-value=5e-05 Score=68.79 Aligned_cols=141 Identities=16% Similarity=0.164 Sum_probs=86.2
Q ss_pred HCCCCCCcHHHHhHHHHhhcCC--cEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHH-----
Q 013176 44 KLGFVEPTPIQAQGWPMALKGR--DLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQI----- 116 (448)
Q Consensus 44 ~~~~~~~~~~Q~~~i~~~~~~~--~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~----- 116 (448)
.+|+.-.+..|.-|+..++... =+.+.+..|+|||+.++.+.+.+...++. -.++++.=|+..+-+++
T Consensus 223 vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~-----y~KiiVtRp~vpvG~dIGfLPG 297 (436)
T COG1875 223 VWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKR-----YRKIIVTRPTVPVGEDIGFLPG 297 (436)
T ss_pred hhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhh-----hceEEEecCCcCcccccCcCCC
Confidence 4678666778888889888764 36667999999999999888888766543 45678877766554221
Q ss_pred ------HHHHHHhhcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCC----------ccEEEE
Q 013176 117 ------QEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRR----------VTYLVL 180 (448)
Q Consensus 117 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~----------~~~iIv 180 (448)
.-|++...+. .+.+... ==++.+.+...+......+.. -.+||+
T Consensus 298 ~eEeKm~PWmq~i~Dn-----------------LE~L~~~---~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiII 357 (436)
T COG1875 298 TEEEKMGPWMQAIFDN-----------------LEVLFSP---NEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIII 357 (436)
T ss_pred chhhhccchHHHHHhH-----------------HHHHhcc---cccchHHHHHHHhccceeeeeeeeecccccccceEEE
Confidence 1111111110 0111110 001123333333333222111 258999
Q ss_pred ecccccccCCCHHHHHHHHHHcCCCcceEEEec
Q 013176 181 DEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSA 213 (448)
Q Consensus 181 DE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~SA 213 (448)
|||+.+ ....++.++....+..++|++.-
T Consensus 358 DEaQNL----TpheikTiltR~G~GsKIVl~gd 386 (436)
T COG1875 358 DEAQNL----TPHELKTILTRAGEGSKIVLTGD 386 (436)
T ss_pred ehhhcc----CHHHHHHHHHhccCCCEEEEcCC
Confidence 999987 56788899999999999887543
No 198
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=97.97 E-value=3.4e-05 Score=62.22 Aligned_cols=69 Identities=19% Similarity=0.315 Sum_probs=51.4
Q ss_pred HHHHHHHHHhcCCC---CEEEEecc--ccCCCCCCC--ccEEEEcCCCC----C--------------------------
Q 013176 310 ERDWVLAEFRSGRS---PIMTATDV--AARGLDVKD--IKCVVNYDFPT----S-------------------------- 352 (448)
Q Consensus 310 ~r~~~~~~f~~g~~---~vLv~T~~--~~~Gidi~~--~~~Vi~~~~p~----s-------------------------- 352 (448)
+..++++.|++..- .||+++.- +++|||+|+ +++||+.++|. +
T Consensus 32 ~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (142)
T smart00491 32 ETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPDSPILRARLEYLDEKGGIRPFDEVYLFD 111 (142)
T ss_pred hHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 44678888886433 58888866 899999997 78899888773 1
Q ss_pred -hhhhhhcccccCCCCCCceEEEEecC
Q 013176 353 -LEDYVHRIGRTGRAGARGTAFTFFTH 378 (448)
Q Consensus 353 -~~~~~Q~~GR~~R~g~~g~~~~~~~~ 378 (448)
...+.|.+||+-|..++-.++++++.
T Consensus 112 a~~~~~Qa~GR~iR~~~D~g~i~l~D~ 138 (142)
T smart00491 112 AMRALAQAIGRAIRHKNDYGVVVLLDK 138 (142)
T ss_pred HHHHHHHHhCccccCccceEEEEEEec
Confidence 12356999999998776666666654
No 199
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.87 E-value=8.9e-05 Score=69.20 Aligned_cols=123 Identities=20% Similarity=0.071 Sum_probs=78.3
Q ss_pred CcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCCc
Q 013176 50 PTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGI 129 (448)
Q Consensus 50 ~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~ 129 (448)
+++-|.+++.. ...+++|.|+.|||||.+.+--++..+.... -...+++++++|+..+.++.+++.........
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~----~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~ 74 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG----VPPERILVLTFTNAAAQEMRERIRELLEEEQQ 74 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS----STGGGEEEEESSHHHHHHHHHHHHHHHHHCCH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhcccc----CChHHheecccCHHHHHHHHHHHHHhcCcccc
Confidence 57889999988 6678999999999999987666665555432 12556999999999999999999886443211
Q ss_pred eEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCC--CCccEEEEeccc
Q 013176 130 RSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNL--RRVTYLVLDEAD 184 (448)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~--~~~~~iIvDE~h 184 (448)
. ................+.|+|.+.|...+.+..... -...+-++|+..
T Consensus 75 ~------~~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 75 E------SSDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp C------CTT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred c------ccccccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 0 000001112222345689999999876554332221 123466777776
No 200
>PRK06526 transposase; Provisional
Probab=97.86 E-value=5.2e-05 Score=67.71 Aligned_cols=24 Identities=17% Similarity=0.170 Sum_probs=18.9
Q ss_pred hhcCCcEEEEcCCCChHHHHHHHH
Q 013176 61 ALKGRDLIGIAETGSGKTLSYLLP 84 (448)
Q Consensus 61 ~~~~~~~lv~~~tGsGKT~~~~l~ 84 (448)
+..+.+++++||+|+|||..+...
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~al 118 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAIGL 118 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHHHH
Confidence 445679999999999999875543
No 201
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.82 E-value=0.00041 Score=73.50 Aligned_cols=138 Identities=20% Similarity=0.113 Sum_probs=83.8
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHhHHHHhhcC-CcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHH
Q 013176 33 NFPDYCLEVIAKLGFVEPTPIQAQGWPMALKG-RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRE 111 (448)
Q Consensus 33 ~l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~~~-~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~ 111 (448)
.+++...+.....++ .+++-|.+++..+... +-.++.|+.|+|||.+ +-++...+... +.+++.++||-.
T Consensus 366 ~v~~~~l~a~~~~~~-~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~-l~~~~~~~e~~-------G~~V~g~ApTgk 436 (1102)
T PRK13826 366 GVREAVLAATFARHA-RLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTM-MKAAREAWEAA-------GYRVVGGALAGK 436 (1102)
T ss_pred CCCHHHHHHHHhcCC-CCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHH-HHHHHHHHHHc-------CCeEEEEcCcHH
Confidence 344555555445556 7999999999988654 4567789999999975 44444444442 678999999866
Q ss_pred HHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCCC
Q 013176 112 LAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGF 191 (448)
Q Consensus 112 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~ 191 (448)
-+..+. + ..++.. .|..+|+.........+..-++|||||+.++.
T Consensus 437 AA~~L~----e---~~Gi~a------------------------~TIas~ll~~~~~~~~l~~~~vlVIDEAsMv~---- 481 (1102)
T PRK13826 437 AAEGLE----K---EAGIQS------------------------RTLSSWELRWNQGRDQLDNKTVFVLDEAGMVA---- 481 (1102)
T ss_pred HHHHHH----H---hhCCCe------------------------eeHHHHHhhhccCccCCCCCcEEEEECcccCC----
Confidence 554432 2 122221 12223211111222345556799999999763
Q ss_pred HHHHHHHHHHcC-CCcceEEEecc
Q 013176 192 EPQIRKIVTQIR-PDRQTLYWSAT 214 (448)
Q Consensus 192 ~~~~~~~~~~~~-~~~~~v~~SAT 214 (448)
...+..++.... ...++|++.-+
T Consensus 482 ~~~m~~Ll~~~~~~garvVLVGD~ 505 (1102)
T PRK13826 482 SRQMALFVEAVTRAGAKLVLVGDP 505 (1102)
T ss_pred HHHHHHHHHHHHhcCCEEEEECCH
Confidence 344555555553 56777776554
No 202
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=97.82 E-value=0.00032 Score=66.28 Aligned_cols=75 Identities=17% Similarity=0.049 Sum_probs=49.7
Q ss_pred CCCCCCcHHHHhHHHHhh----cCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHH
Q 013176 45 LGFVEPTPIQAQGWPMAL----KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEA 120 (448)
Q Consensus 45 ~~~~~~~~~Q~~~i~~~~----~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~ 120 (448)
++|...+|.|.+-...+. .+.+.++.+|+|+|||.+.+-.++......+. ...++++..-|..-++....++
T Consensus 12 FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~----~~~KliYCSRTvpEieK~l~El 87 (755)
T KOG1131|consen 12 FPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPD----EHRKLIYCSRTVPEIEKALEEL 87 (755)
T ss_pred cCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCc----ccceEEEecCcchHHHHHHHHH
Confidence 457778999987776554 34689999999999997755444444333321 3556788777766555555565
Q ss_pred HHh
Q 013176 121 LKF 123 (448)
Q Consensus 121 ~~~ 123 (448)
+.+
T Consensus 88 ~~l 90 (755)
T KOG1131|consen 88 KRL 90 (755)
T ss_pred HHH
Confidence 554
No 203
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.77 E-value=0.00022 Score=72.28 Aligned_cols=137 Identities=20% Similarity=0.138 Sum_probs=87.3
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHhHHHHhhcCC-cEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcH
Q 013176 32 ANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGR-DLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTR 110 (448)
Q Consensus 32 ~~l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~~~~-~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~ 110 (448)
..+.|.+... -+..++..|++|+..++..+ -.+|.|-+|+|||.+... ++..+... +++||+.+=|.
T Consensus 656 ~~~~p~~~~~----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~-LIkiL~~~-------gkkVLLtsyTh 723 (1100)
T KOG1805|consen 656 KVLIPKIKKI----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISL-LIKILVAL-------GKKVLLTSYTH 723 (1100)
T ss_pred cccCchhhHH----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHH-HHHHHHHc-------CCeEEEEehhh
Confidence 4455555543 13478999999998887765 467789999999976443 33333332 67799998888
Q ss_pred HHHHHHHHHHHHhhcCCCceEEEEEc---------------CC--CchHhHHHHhcCCcEEEEccHHHHHHHHccccCCC
Q 013176 111 ELAVQIQEEALKFGSRAGIRSTCIYG---------------GA--PKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLR 173 (448)
Q Consensus 111 ~L~~q~~~~~~~~~~~~~~~~~~~~~---------------~~--~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~ 173 (448)
.-++.+.-.++.+. +.+..+-. +. ..-...........|+.||.--+.+.+. ..+
T Consensus 724 sAVDNILiKL~~~~----i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf----~~R 795 (1100)
T KOG1805|consen 724 SAVDNILIKLKGFG----IYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPLF----VNR 795 (1100)
T ss_pred HHHHHHHHHHhccC----cceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchhh----hcc
Confidence 88888877777753 22221111 11 1112233445668899999644433333 345
Q ss_pred CccEEEEeccccccc
Q 013176 174 RVTYLVLDEADRMLD 188 (448)
Q Consensus 174 ~~~~iIvDE~h~~~~ 188 (448)
.||+.|||||-++..
T Consensus 796 ~FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 796 QFDYCIIDEASQILL 810 (1100)
T ss_pred ccCEEEEcccccccc
Confidence 599999999998764
No 204
>PRK08181 transposase; Validated
Probab=97.75 E-value=0.00022 Score=64.10 Aligned_cols=58 Identities=21% Similarity=0.188 Sum_probs=34.5
Q ss_pred CcHHHHhHHH----HhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHH
Q 013176 50 PTPIQAQGWP----MALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQI 116 (448)
Q Consensus 50 ~~~~Q~~~i~----~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~ 116 (448)
+.+.|..++. .+..+++++++||+|+|||..+.. +...+... +..++++ +...|+.++
T Consensus 88 ~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~A-ia~~a~~~-------g~~v~f~-~~~~L~~~l 149 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAA-IGLALIEN-------GWRVLFT-RTTDLVQKL 149 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHH-HHHHHHHc-------CCceeee-eHHHHHHHH
Confidence 3456665553 234667899999999999976443 33333332 3445554 445565554
No 205
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.74 E-value=0.00014 Score=64.26 Aligned_cols=53 Identities=23% Similarity=0.380 Sum_probs=41.7
Q ss_pred CCCCCcccccccCCCCHHHHHHHHH-CCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcC
Q 013176 20 HDVPRPIRIFQEANFPDYCLEVIAK-LGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQ 92 (448)
Q Consensus 20 ~~~~~p~~~~~~~~l~~~l~~~~~~-~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~ 92 (448)
+.+|..+.+|+++++|+.+.+.+.. .|. ++|.+|||||||.+ +.+++.++++.
T Consensus 99 R~Ip~~i~~~e~LglP~i~~~~~~~~~GL-------------------ILVTGpTGSGKSTT-lAamId~iN~~ 152 (353)
T COG2805 99 RLIPSKIPTLEELGLPPIVRELAESPRGL-------------------ILVTGPTGSGKSTT-LAAMIDYINKH 152 (353)
T ss_pred eccCccCCCHHHcCCCHHHHHHHhCCCce-------------------EEEeCCCCCcHHHH-HHHHHHHHhcc
Confidence 7889999999999999888775432 222 78889999999976 77778877764
No 206
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.72 E-value=0.0031 Score=58.94 Aligned_cols=131 Identities=21% Similarity=0.248 Sum_probs=74.0
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHh
Q 013176 64 GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQ 143 (448)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (448)
++.+.++||||.|||.+..-.+....... +.....||-..|--.. ..++++.|++.+++.+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~-----~~~kVaiITtDtYRIG--A~EQLk~Ya~im~vp~------------ 263 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLK-----KKKKVAIITTDTYRIG--AVEQLKTYADIMGVPL------------ 263 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhc-----cCcceEEEEeccchhh--HHHHHHHHHHHhCCce------------
Confidence 56788899999999987543333333111 1133345544443332 2455666665555543
Q ss_pred HHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccC-CCHHHHHHHHHHcCCCcceEEEeccCch-HHHH
Q 013176 144 IRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDM-GFEPQIRKIVTQIRPDRQTLYWSATWPR-EVET 221 (448)
Q Consensus 144 ~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~-~~~~~~~~~~~~~~~~~~~v~~SAT~~~-~~~~ 221 (448)
.++-+|.-|...+.. +.++++|.||=+-+-... .....+..+.....+....+.+|||... ++..
T Consensus 264 ---------~vv~~~~el~~ai~~----l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlke 330 (407)
T COG1419 264 ---------EVVYSPKELAEAIEA----LRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKE 330 (407)
T ss_pred ---------EEecCHHHHHHHHHH----hhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHH
Confidence 456667666555443 556789999988753222 1334444554444344556888999754 3444
Q ss_pred HHHHH
Q 013176 222 LARQF 226 (448)
Q Consensus 222 ~~~~~ 226 (448)
....+
T Consensus 331 i~~~f 335 (407)
T COG1419 331 IIKQF 335 (407)
T ss_pred HHHHh
Confidence 44444
No 207
>PRK04296 thymidine kinase; Provisional
Probab=97.69 E-value=0.00014 Score=62.13 Aligned_cols=110 Identities=17% Similarity=0.213 Sum_probs=55.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHHH
Q 013176 67 LIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRD 146 (448)
Q Consensus 67 ~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (448)
.++.+|+|+|||..++ -++..+... +.+++++-|...-. .....+....++...
T Consensus 5 ~litG~~GsGKTT~~l-~~~~~~~~~-------g~~v~i~k~~~d~~----~~~~~i~~~lg~~~~-------------- 58 (190)
T PRK04296 5 EFIYGAMNSGKSTELL-QRAYNYEER-------GMKVLVFKPAIDDR----YGEGKVVSRIGLSRE-------------- 58 (190)
T ss_pred EEEECCCCCHHHHHHH-HHHHHHHHc-------CCeEEEEecccccc----ccCCcEecCCCCccc--------------
Confidence 5788999999997644 334443332 55678776621110 001111111121110
Q ss_pred HhcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCCCHHHHHHHHHHcCCCcceEEEecc
Q 013176 147 LRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSAT 214 (448)
Q Consensus 147 ~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT 214 (448)
.+.+..++.++..+.. .-.++++||+||+|.+. ...+..+.+.+.+....+.+|+-
T Consensus 59 -----~~~~~~~~~~~~~~~~---~~~~~dvviIDEaq~l~----~~~v~~l~~~l~~~g~~vi~tgl 114 (190)
T PRK04296 59 -----AIPVSSDTDIFELIEE---EGEKIDCVLIDEAQFLD----KEQVVQLAEVLDDLGIPVICYGL 114 (190)
T ss_pred -----ceEeCChHHHHHHHHh---hCCCCCEEEEEccccCC----HHHHHHHHHHHHHcCCeEEEEec
Confidence 0123444555555443 23467899999998642 23355555554333344445443
No 208
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=97.61 E-value=0.0055 Score=69.99 Aligned_cols=236 Identities=12% Similarity=0.147 Sum_probs=125.3
Q ss_pred CCcHHHHhHHHHhhcC--CcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcC
Q 013176 49 EPTPIQAQGWPMALKG--RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSR 126 (448)
Q Consensus 49 ~~~~~Q~~~i~~~~~~--~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~ 126 (448)
.+++-|++++..++.. +-.++.++.|+|||.+ +-.++..+... +.+|++++||-.-+.++.+.......
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~-l~~l~~~~~~~-------G~~V~~lAPTgrAA~~L~e~~g~~A~- 499 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI-AQLLLHLASEQ-------GYEIQIITAGSLSAQELRQKIPRLAS- 499 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH-HHHHHHHHHhc-------CCeEEEEeCCHHHHHHHHHHhcchhh-
Confidence 6899999999998875 4567779999999975 44444444442 67899999998776665554321100
Q ss_pred CCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCCCHHHHHHHHHHc-CCC
Q 013176 127 AGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQI-RPD 205 (448)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~-~~~ 205 (448)
. .......+.. +.-..|...|+ .....+..-++|||||+-++. ...+..++... ..+
T Consensus 500 ------T------i~~~l~~l~~--~~~~~tv~~fl----~~~~~l~~~~vlIVDEAsMl~----~~~~~~Ll~~a~~~g 557 (1960)
T TIGR02760 500 ------T------FITWVKNLFN--DDQDHTVQGLL----DKSSPFSNKDIFVVDEANKLS----NNELLKLIDKAEQHN 557 (1960)
T ss_pred ------h------HHHHHHhhcc--cccchhHHHhh----cccCCCCCCCEEEEECCCCCC----HHHHHHHHHHHhhcC
Confidence 0 0011111111 11123333343 122334567899999999763 34555565544 467
Q ss_pred cceEEEeccC--c----hHHHHHHHHHcCCCeEEEeCCcccccccCcceEEEEecchhHHHHHHHHHHhhh-cCCcEEEE
Q 013176 206 RQTLYWSATW--P----REVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKEVM-DGSRILIF 278 (448)
Q Consensus 206 ~~~v~~SAT~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~k~lVf 278 (448)
.++|++.-+- + ......+... +-+.. ...... .....+ .+...........+.+.+.... ...+++|+
T Consensus 558 arvVlvGD~~QL~sV~aG~~f~~L~~~-gv~t~-~l~~i~-rq~~~v--~i~~~~~~~r~~~ia~~y~~L~~~r~~tliv 632 (1960)
T TIGR02760 558 SKLILLNDSAQRQGMSAGSAIDLLKEG-GVTTY-AWVDTK-QQKASV--EISEAVDKLRVDYIASAWLDLTPDRQNSQVL 632 (1960)
T ss_pred CEEEEEcChhhcCccccchHHHHHHHC-CCcEE-Eeeccc-ccCcce--eeeccCchHHHHHHHHHHHhcccccCceEEE
Confidence 8888876652 1 1223333322 11111 111110 001111 1222233344445555554444 34468999
Q ss_pred ecchhHHHHHHHHHHh----CC------CCeEEEc-CCCCHHHHHHHHHHHhcC
Q 013176 279 TETKKGCDQVTRQLRM----DG------WPALSIH-GDKNQSERDWVLAEFRSG 321 (448)
Q Consensus 279 ~~~~~~~~~l~~~L~~----~~------~~~~~~~-~~~~~~~r~~~~~~f~~g 321 (448)
..+.++...+...++. .| .....+. ..++..++.. ...|+.|
T Consensus 633 ~~t~~dr~~Ln~~iR~~L~~~G~L~~~~~~~~~L~p~~lt~~e~r~-~~~Yr~G 685 (1960)
T TIGR02760 633 ATTHREQQDLTQIIRNALKQEGQLSRQEVTVPTLKPVNLTGIQRRN-AAHYKQG 685 (1960)
T ss_pred cCCcHHHHHHHHHHHHHHHHcCCcCCCceEEEEeccCCCCHHHHhh-HhhcCCC
Confidence 9998888888877654 22 1222332 3566666553 3555544
No 209
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.61 E-value=0.00025 Score=56.65 Aligned_cols=37 Identities=19% Similarity=0.274 Sum_probs=22.7
Q ss_pred cEEEEecccccccCCCHHHHHHHHHHcCCCcceEEEeccC
Q 013176 176 TYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATW 215 (448)
Q Consensus 176 ~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~ 215 (448)
.+||+||+|++. . ...+..+........-.+.+++++
T Consensus 89 ~~lviDe~~~l~--~-~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 89 VLLVIDEADHLF--S-DEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp EEEEEETTHHHH--T-HHHHHHHHHHTCSCBEEEEEEESS
T ss_pred eEEEEeChHhcC--C-HHHHHHHHHHHhCCCCeEEEEECh
Confidence 689999999964 1 445555544444333345566664
No 210
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=97.50 E-value=0.0005 Score=71.71 Aligned_cols=154 Identities=18% Similarity=0.087 Sum_probs=94.0
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhc----------CCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEE
Q 013176 64 GRDLIGIAETGSGKTLSYLLPAFVHVSA----------QPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTC 133 (448)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~l~~l~~~~~----------~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~ 133 (448)
++++++.-..|.|||.+-+...+...-. ........-+..||++| .++..||.+++.+..... +++..
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P-~aIl~QW~~EI~kH~~~~-lKv~~ 451 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICP-NAILMQWFEEIHKHISSL-LKVLL 451 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECc-HHHHHHHHHHHHHhcccc-ceEEE
Confidence 3567778889999998765444333110 00000112456899999 678899999999987654 66665
Q ss_pred EEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccC--------------CCC------ccEEEEecccccccCCCHH
Q 013176 134 IYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTN--------------LRR------VTYLVLDEADRMLDMGFEP 193 (448)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~--------------~~~------~~~iIvDE~h~~~~~~~~~ 193 (448)
..|=.+.......-...+|||+||++.|-.-+.+...+ ..+ +=-|++||++.+.. ...
T Consensus 452 Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves--ssS 529 (1394)
T KOG0298|consen 452 YFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES--SSS 529 (1394)
T ss_pred EechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc--hHH
Confidence 55533222222233456999999999986655433111 111 11389999997655 244
Q ss_pred HHHHHHHHcCCCcceEEEeccCchHHHHH
Q 013176 194 QIRKIVTQIRPDRQTLYWSATWPREVETL 222 (448)
Q Consensus 194 ~~~~~~~~~~~~~~~v~~SAT~~~~~~~~ 222 (448)
...++...+ +....-++|+||...+..+
T Consensus 530 ~~a~M~~rL-~~in~W~VTGTPiq~Iddl 557 (1394)
T KOG0298|consen 530 AAAEMVRRL-HAINRWCVTGTPIQKIDDL 557 (1394)
T ss_pred HHHHHHHHh-hhhceeeecCCchhhhhhh
Confidence 555555555 4556788999986654443
No 211
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.48 E-value=0.00048 Score=61.17 Aligned_cols=44 Identities=14% Similarity=0.233 Sum_probs=33.2
Q ss_pred CCCCccEEEEecccccccCCCHHHHHHHHHHcCCCcceEEEeccC
Q 013176 171 NLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATW 215 (448)
Q Consensus 171 ~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~ 215 (448)
..+.+..+|+||||.|.... ...+++.+...+...++++.+..+
T Consensus 126 ~~~~fKiiIlDEcdsmtsda-q~aLrr~mE~~s~~trFiLIcnyl 169 (346)
T KOG0989|consen 126 PCPPFKIIILDECDSMTSDA-QAALRRTMEDFSRTTRFILICNYL 169 (346)
T ss_pred CCCcceEEEEechhhhhHHH-HHHHHHHHhccccceEEEEEcCCh
Confidence 35567999999999987654 567777777777777777777664
No 212
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.48 E-value=0.0033 Score=59.59 Aligned_cols=158 Identities=18% Similarity=0.165 Sum_probs=80.2
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEE-cCc-HHHHHHHHHHHHHhhcCCCceEEEEEcCCCchH
Q 013176 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVL-APT-RELAVQIQEEALKFGSRAGIRSTCIYGGAPKGP 142 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil-~P~-~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (448)
..+++++|||+|||.+..-.+........ ..+.++.++ +.+ +.-+ ..+++.++...++.+.
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~----~~g~~V~lit~Dt~R~aa---~eQL~~~a~~lgvpv~---------- 237 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSD----DKSLNIKIITIDNYRIGA---KKQIQTYGDIMGIPVK---------- 237 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhc----cCCCeEEEEeccCccHHH---HHHHHHHhhcCCcceE----------
Confidence 35788899999999875433322221110 013344443 333 2222 2235555554454432
Q ss_pred hHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCC-CHHHHHHHHHHcCCC-cceEEEeccCchH-H
Q 013176 143 QIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMG-FEPQIRKIVTQIRPD-RQTLYWSATWPRE-V 219 (448)
Q Consensus 143 ~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~-~~~~~~~~~~~~~~~-~~~v~~SAT~~~~-~ 219 (448)
.+-+++.+...+.. ..++++|+||++.+..... ....+..++....+. ..++.+|||.... .
T Consensus 238 -----------~~~~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~ 302 (388)
T PRK12723 238 -----------AIESFKDLKEEITQ----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDV 302 (388)
T ss_pred -----------eeCcHHHHHHHHHH----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHH
Confidence 12233444333332 3568999999999875321 123444455544333 4678899997643 3
Q ss_pred HHHHHHHcCCCeEEEeCCcccccccCcceEEEEecchhHHHHHHHHHHh
Q 013176 220 ETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKE 268 (448)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 268 (448)
......+..- ..-..++...++..+.-.++.++..
T Consensus 303 ~~~~~~~~~~--------------~~~~~I~TKlDet~~~G~~l~~~~~ 337 (388)
T PRK12723 303 KEIFHQFSPF--------------SYKTVIFTKLDETTCVGNLISLIYE 337 (388)
T ss_pred HHHHHHhcCC--------------CCCEEEEEeccCCCcchHHHHHHHH
Confidence 3333333111 1123344455566666666666654
No 213
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.47 E-value=0.009 Score=56.05 Aligned_cols=156 Identities=19% Similarity=0.237 Sum_probs=79.1
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcC-c-H-HHHHHHHHHHHHhhcCCCceEEEEEcCCCch
Q 013176 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAP-T-R-ELAVQIQEEALKFGSRAGIRSTCIYGGAPKG 141 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P-~-~-~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (448)
+.+++++|+|+|||......+. .+..+ +.++.++.. + + ..++|+. .+....++.+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~-~L~~~-------GkkVglI~aDt~RiaAvEQLk----~yae~lgipv---------- 299 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAW-QFHGK-------KKTVGFITTDHSRIGTVQQLQ----DYVKTIGFEV---------- 299 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHH-HHHHc-------CCcEEEEecCCcchHHHHHHH----HHhhhcCCcE----------
Confidence 3578889999999986544333 33322 344544433 2 2 3344444 3322223222
Q ss_pred HhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCC-CHHHHHHHHHHcCCCcceEEEeccCch-HH
Q 013176 142 PQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMG-FEPQIRKIVTQIRPDRQTLYWSATWPR-EV 219 (448)
Q Consensus 142 ~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~-~~~~~~~~~~~~~~~~~~v~~SAT~~~-~~ 219 (448)
+.+.++..+.+.+..... ..++++|+||-+=+..... .-..+..++....+...++.+|||... +.
T Consensus 300 -----------~v~~d~~~L~~aL~~lk~-~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~ 367 (436)
T PRK11889 300 -----------IAVRDEAAMTRALTYFKE-EARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDM 367 (436)
T ss_pred -----------EecCCHHHHHHHHHHHHh-ccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHH
Confidence 223456666554432211 1247899999997654321 223344444444455556778987654 44
Q ss_pred HHHHHHHcCCCeEEEeCCcccccccCcceEEEEecchhHHHHHHHHHHh
Q 013176 220 ETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKE 268 (448)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 268 (448)
...+..+-.- ..-..++...++..+.-.++.+...
T Consensus 368 ~~i~~~F~~~--------------~idglI~TKLDET~k~G~iLni~~~ 402 (436)
T PRK11889 368 IEIITNFKDI--------------HIDGIVFTKFDETASSGELLKIPAV 402 (436)
T ss_pred HHHHHHhcCC--------------CCCEEEEEcccCCCCccHHHHHHHH
Confidence 5555554211 1123334444555555566665554
No 214
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.43 E-value=0.00057 Score=60.97 Aligned_cols=64 Identities=17% Similarity=0.394 Sum_probs=53.3
Q ss_pred HHHHHHhcCCCCEEEEeccccCCCCCCC--------ccEEEEcCCCCChhhhhhcccccCCCCCC-ceEEEEe
Q 013176 313 WVLAEFRSGRSPIMTATDVAARGLDVKD--------IKCVVNYDFPTSLEDYVHRIGRTGRAGAR-GTAFTFF 376 (448)
Q Consensus 313 ~~~~~f~~g~~~vLv~T~~~~~Gidi~~--------~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~-g~~~~~~ 376 (448)
...+.|.+|+.+|+|.+.+.++|+.+.. -++-|...+||+....+|..||+.|.++. ...+.++
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l 124 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFL 124 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEe
Confidence 4567899999999999999999999974 34677899999999999999999999884 3334443
No 215
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.40 E-value=0.00042 Score=59.37 Aligned_cols=54 Identities=24% Similarity=0.309 Sum_probs=35.7
Q ss_pred CCccEEEEecccccccC-CCHHHHHHHHHHcCCCcceEEEeccCchHHHHHHHHH
Q 013176 173 RRVTYLVLDEADRMLDM-GFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQF 226 (448)
Q Consensus 173 ~~~~~iIvDE~h~~~~~-~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~ 226 (448)
+++++|+||-+-+.... .....+..+.....+..-++.++||...+....+..+
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~ 136 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAF 136 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHH
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHH
Confidence 44789999999765332 1345666777777777788999999876554444433
No 216
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.39 E-value=0.0078 Score=58.37 Aligned_cols=142 Identities=18% Similarity=0.126 Sum_probs=73.4
Q ss_pred EEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHH-hhcCCCceEEEEEcCCCch----Hh
Q 013176 69 GIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALK-FGSRAGIRSTCIYGGAPKG----PQ 143 (448)
Q Consensus 69 v~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~-~~~~~~~~~~~~~~~~~~~----~~ 143 (448)
..+.||||||+++.-.++....+. -...|+.|.....++.+...+-. .....-..-...+++.... ..
T Consensus 2 f~matgsgkt~~ma~lil~~y~kg-------yr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~ 74 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKKG-------YRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNN 74 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHhc-------hhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecc
Confidence 457899999998776666665552 33467777766666554433221 0000000001111111100 00
Q ss_pred HHHHhcCCcEEEEccHHHHHHHHccccC------CCCcc-EEEEecccccccCC---------CHHHHHHHH-HHc--CC
Q 013176 144 IRDLRRGVEIVIATPGRLIDMLEAQHTN------LRRVT-YLVLDEADRMLDMG---------FEPQIRKIV-TQI--RP 204 (448)
Q Consensus 144 ~~~~~~~~~iiv~T~~~l~~~~~~~~~~------~~~~~-~iIvDE~h~~~~~~---------~~~~~~~~~-~~~--~~ 204 (448)
.........|+++|.+.|...+-+.+.+ +.+.. +++-||+|++.... ....|...+ -.+ .+
T Consensus 75 fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~nk 154 (812)
T COG3421 75 FSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQNK 154 (812)
T ss_pred cCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhcCC
Confidence 1112335679999999998776544332 23333 56779999986432 111122211 111 24
Q ss_pred CcceEEEeccCch
Q 013176 205 DRQTLYWSATWPR 217 (448)
Q Consensus 205 ~~~~v~~SAT~~~ 217 (448)
+.-++.+|||.+.
T Consensus 155 d~~~lef~at~~k 167 (812)
T COG3421 155 DNLLLEFSATIPK 167 (812)
T ss_pred CceeehhhhcCCc
Confidence 4556778999873
No 217
>PRK06921 hypothetical protein; Provisional
Probab=97.36 E-value=0.0035 Score=56.58 Aligned_cols=45 Identities=22% Similarity=0.174 Sum_probs=27.3
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHH
Q 013176 64 GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQI 116 (448)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~ 116 (448)
+.++++.|++|+|||..+ .+++..+..+ .+..++++. ...+..++
T Consensus 117 ~~~l~l~G~~G~GKThLa-~aia~~l~~~------~g~~v~y~~-~~~l~~~l 161 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLL-TAAANELMRK------KGVPVLYFP-FVEGFGDL 161 (266)
T ss_pred CCeEEEECCCCCcHHHHH-HHHHHHHhhh------cCceEEEEE-HHHHHHHH
Confidence 467999999999999763 3444444432 134466654 34454443
No 218
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.34 E-value=0.003 Score=51.22 Aligned_cols=17 Identities=29% Similarity=0.434 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCChHHHH
Q 013176 64 GRDLIGIAETGSGKTLS 80 (448)
Q Consensus 64 ~~~~lv~~~tGsGKT~~ 80 (448)
+..+++.||+|+|||..
T Consensus 19 ~~~v~i~G~~G~GKT~l 35 (151)
T cd00009 19 PKNLLLYGPPGTGKTTL 35 (151)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 56799999999999964
No 219
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.33 E-value=0.002 Score=60.57 Aligned_cols=161 Identities=19% Similarity=0.168 Sum_probs=78.2
Q ss_pred cccccCCCCHHHHHHHHH-CC----CCC---CcHHHHhHHHHh-----------hcCCcEEEEcCCCChHHHHHHHHHHH
Q 013176 27 RIFQEANFPDYCLEVIAK-LG----FVE---PTPIQAQGWPMA-----------LKGRDLIGIAETGSGKTLSYLLPAFV 87 (448)
Q Consensus 27 ~~~~~~~l~~~l~~~~~~-~~----~~~---~~~~Q~~~i~~~-----------~~~~~~lv~~~tGsGKT~~~~l~~l~ 87 (448)
..+...++++.+.+.+-. +. ... ...+..+.+... .++..+++++|||+|||......+..
T Consensus 81 ~~L~~~g~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 81 KYLFAAGFSAQLVRMIVDNLPEGEGYDTLDAAADWAQSVLAANLPVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred HHHHHCCCCHHHHHHHHHhhhhhcccCCHHHHHHHHHHHHHhcchhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 445667888888877643 21 111 123333333221 12457888999999999875443333
Q ss_pred HhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHc
Q 013176 88 HVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEA 167 (448)
Q Consensus 88 ~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~ 167 (448)
..... ...++.++. +...-.--.++++.|+...++.+. .+-++..+...+.
T Consensus 161 ~~~~~------G~~~V~lit-~D~~R~ga~EqL~~~a~~~gv~~~---------------------~~~~~~~l~~~l~- 211 (374)
T PRK14722 161 CVMRF------GASKVALLT-TDSYRIGGHEQLRIFGKILGVPVH---------------------AVKDGGDLQLALA- 211 (374)
T ss_pred HHHhc------CCCeEEEEe-cccccccHHHHHHHHHHHcCCceE---------------------ecCCcccHHHHHH-
Confidence 22221 012444443 222211123344444444444332 2333333333222
Q ss_pred cccCCCCccEEEEecccccccCC-CHHHHHHHHHHcCCCcceEEEeccCchHH
Q 013176 168 QHTNLRRVTYLVLDEADRMLDMG-FEPQIRKIVTQIRPDRQTLYWSATWPREV 219 (448)
Q Consensus 168 ~~~~~~~~~~iIvDE~h~~~~~~-~~~~~~~~~~~~~~~~~~v~~SAT~~~~~ 219 (448)
.+.+.++|+||++=...... ....+..+.....+...++.++||...+.
T Consensus 212 ---~l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~ 261 (374)
T PRK14722 212 ---ELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDT 261 (374)
T ss_pred ---HhcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHH
Confidence 23456899999997543211 12223333222223445788999975543
No 220
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=97.23 E-value=0.0019 Score=67.24 Aligned_cols=108 Identities=17% Similarity=0.144 Sum_probs=74.1
Q ss_pred CCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCC
Q 013176 49 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAG 128 (448)
Q Consensus 49 ~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~ 128 (448)
.|++-|++++... ...++|.|..|||||.+.+.-+...+..... ....+++++-|+..|.++.+++.++....
T Consensus 9 ~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v----~p~~IL~lTFT~kAA~Em~~Rl~~~~~~~- 81 (721)
T PRK11773 9 SLNDKQREAVAAP--LGNMLVLAGAGSGKTRVLVHRIAWLMQVENA----SPYSIMAVTFTNKAAAEMRHRIEQLLGTS- 81 (721)
T ss_pred hcCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCCC----ChhHeEeeeccHHHHHHHHHHHHHHhccC-
Confidence 5899999998753 4579999999999999866655555443211 24579999999999999999998864310
Q ss_pred ceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHcccc---CCCCccEEEEecccc
Q 013176 129 IRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHT---NLRRVTYLVLDEADR 185 (448)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~---~~~~~~~iIvDE~h~ 185 (448)
...+.|+|.++|...+.+... .+. -++-|+|+.+.
T Consensus 82 ---------------------~~~~~i~TfHs~~~~iLr~~~~~~g~~-~~f~i~d~~d~ 119 (721)
T PRK11773 82 ---------------------QGGMWVGTFHGLAHRLLRAHWQDANLP-QDFQILDSDDQ 119 (721)
T ss_pred ---------------------CCCCEEEcHHHHHHHHHHHHHHHhCCC-CCCeecCHHHH
Confidence 124678999988654433221 111 23457777653
No 221
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=97.20 E-value=0.0014 Score=68.34 Aligned_cols=71 Identities=15% Similarity=0.077 Sum_probs=55.3
Q ss_pred CCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhh
Q 013176 48 VEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (448)
Q Consensus 48 ~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~ 124 (448)
..|++-|++++... ...++|.|..|||||.+.+.-+...+..... ...++++++-|+..|.++.+++.++.
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v----~p~~IL~lTFTnkAA~em~~Rl~~~~ 73 (715)
T TIGR01075 3 DGLNDKQREAVAAP--PGNLLVLAGAGSGKTRVLTHRIAWLLSVENA----SPHSIMAVTFTNKAAAEMRHRIGALL 73 (715)
T ss_pred cccCHHHHHHHcCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCCC----CHHHeEeeeccHHHHHHHHHHHHHHh
Confidence 36899999998753 4579999999999999866655555443211 24579999999999999999998864
No 222
>PRK14974 cell division protein FtsY; Provisional
Probab=97.18 E-value=0.0065 Score=56.45 Aligned_cols=129 Identities=23% Similarity=0.283 Sum_probs=70.7
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCc---HHHHHHHHHHHHHhhcCCCceEEEEEcCCCchH
Q 013176 66 DLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPT---RELAVQIQEEALKFGSRAGIRSTCIYGGAPKGP 142 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~---~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (448)
-+++.+++|+|||.+..- +...+... +.+++++..- ..-.+|+...... .++.+.....+.
T Consensus 142 vi~~~G~~GvGKTTtiak-LA~~l~~~-------g~~V~li~~Dt~R~~a~eqL~~~a~~----lgv~v~~~~~g~---- 205 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAK-LAYYLKKN-------GFSVVIAAGDTFRAGAIEQLEEHAER----LGVKVIKHKYGA---- 205 (336)
T ss_pred EEEEEcCCCCCHHHHHHH-HHHHHHHc-------CCeEEEecCCcCcHHHHHHHHHHHHH----cCCceecccCCC----
Confidence 467789999999976433 22333332 4456555432 3444555444444 344332111111
Q ss_pred hHHHHhcCCcEEEEccHH-HHHHHHccccCCCCccEEEEecccccccC-CCHHHHHHHHHHcCCCcceEEEeccCchHHH
Q 013176 143 QIRDLRRGVEIVIATPGR-LIDMLEAQHTNLRRVTYLVLDEADRMLDM-GFEPQIRKIVTQIRPDRQTLYWSATWPREVE 220 (448)
Q Consensus 143 ~~~~~~~~~~iiv~T~~~-l~~~~~~~~~~~~~~~~iIvDE~h~~~~~-~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~ 220 (448)
.|.. +.+.+... .....++|++|.++++... ..-..+..+.+...+...++.++||...+..
T Consensus 206 --------------dp~~v~~~ai~~~--~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~ 269 (336)
T PRK14974 206 --------------DPAAVAYDAIEHA--KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAV 269 (336)
T ss_pred --------------CHHHHHHHHHHHH--HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHH
Confidence 1111 11222211 1234679999999987532 2445666676667777888889998876655
Q ss_pred HHHHHH
Q 013176 221 TLARQF 226 (448)
Q Consensus 221 ~~~~~~ 226 (448)
..+..+
T Consensus 270 ~~a~~f 275 (336)
T PRK14974 270 EQAREF 275 (336)
T ss_pred HHHHHH
Confidence 555544
No 223
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.17 E-value=0.02 Score=55.32 Aligned_cols=128 Identities=23% Similarity=0.233 Sum_probs=63.6
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHh-hcCCCccCCCCceEEEEc-Cc-HHHHHHHHHHHHHhhcCCCceEEEEEcCCCc
Q 013176 64 GRDLIGIAETGSGKTLSYLLPAFVHV-SAQPRLVQGEGPIVLVLA-PT-RELAVQIQEEALKFGSRAGIRSTCIYGGAPK 140 (448)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~l~~l~~~-~~~~~~~~~~~~~vlil~-P~-~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (448)
++.+++++|||+|||.+..-.+.... ... +.++.++. .+ +.-+ .+++..++...++.+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~-------g~~V~li~~D~~r~~a---~eqL~~~a~~~~vp~--------- 281 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYG-------KKKVALITLDTYRIGA---VEQLKTYAKIMGIPV--------- 281 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcC-------CCeEEEEECCccHHHH---HHHHHHHHHHhCCce---------
Confidence 34678889999999977553333332 121 33454443 22 2111 233333333233322
Q ss_pred hHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCC-CHHHHHHHHHH-cCCCcceEEEeccCch-
Q 013176 141 GPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMG-FEPQIRKIVTQ-IRPDRQTLYWSATWPR- 217 (448)
Q Consensus 141 ~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~-~~~~~~~~~~~-~~~~~~~v~~SAT~~~- 217 (448)
..+.+++.+...+.. +.++++|+||.+-+..... ....+..++.. ..+...+++++||...
T Consensus 282 ------------~~~~~~~~l~~~l~~----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~ 345 (424)
T PRK05703 282 ------------EVVYDPKELAKALEQ----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYE 345 (424)
T ss_pred ------------EccCCHHhHHHHHHH----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHH
Confidence 122344444444432 3357999999987543211 12334444441 1233457889998765
Q ss_pred HHHHHHHHH
Q 013176 218 EVETLARQF 226 (448)
Q Consensus 218 ~~~~~~~~~ 226 (448)
++......+
T Consensus 346 ~l~~~~~~f 354 (424)
T PRK05703 346 DLKDIYKHF 354 (424)
T ss_pred HHHHHHHHh
Confidence 334444443
No 224
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.14 E-value=0.0046 Score=57.40 Aligned_cols=45 Identities=22% Similarity=0.234 Sum_probs=28.5
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHH
Q 013176 64 GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQ 117 (448)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~ 117 (448)
+.++++.|+||+|||..+. ++...+... +..|+++ +...|..++.
T Consensus 183 ~~~Lll~G~~GtGKThLa~-aIa~~l~~~-------g~~V~y~-t~~~l~~~l~ 227 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSN-CIAKELLDR-------GKSVIYR-TADELIEILR 227 (329)
T ss_pred CCcEEEECCCCCcHHHHHH-HHHHHHHHC-------CCeEEEE-EHHHHHHHHH
Confidence 4789999999999998643 444444432 4456655 4455555443
No 225
>PRK12377 putative replication protein; Provisional
Probab=97.14 E-value=0.0029 Score=56.22 Aligned_cols=45 Identities=18% Similarity=0.265 Sum_probs=27.8
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHH
Q 013176 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQE 118 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~ 118 (448)
.++++.||+|+|||..+ .++...+... +..++++ +..+|..++..
T Consensus 102 ~~l~l~G~~GtGKThLa-~AIa~~l~~~-------g~~v~~i-~~~~l~~~l~~ 146 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLA-AAIGNRLLAK-------GRSVIVV-TVPDVMSRLHE 146 (248)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHHc-------CCCeEEE-EHHHHHHHHHH
Confidence 57899999999999763 3444444442 3344444 44566655443
No 226
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.11 E-value=0.0014 Score=52.69 Aligned_cols=41 Identities=22% Similarity=0.206 Sum_probs=25.1
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHH
Q 013176 64 GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTREL 112 (448)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L 112 (448)
+..+++.+|+|+|||..... ++..+... ...++++.+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~-l~~~~~~~-------~~~~~~~~~~~~~ 42 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARA-LARELGPP-------GGGVIYIDGEDIL 42 (148)
T ss_pred CCEEEEECCCCCcHHHHHHH-HHhccCCC-------CCCEEEECCEEcc
Confidence 45789999999999976332 33322221 1247777775543
No 227
>PRK05642 DNA replication initiation factor; Validated
Probab=97.10 E-value=0.003 Score=55.98 Aligned_cols=44 Identities=16% Similarity=0.297 Sum_probs=27.6
Q ss_pred CccEEEEecccccccCC-CHHHHHHHHHHcCCCcceEEEeccCch
Q 013176 174 RVTYLVLDEADRMLDMG-FEPQIRKIVTQIRPDRQTLYWSATWPR 217 (448)
Q Consensus 174 ~~~~iIvDE~h~~~~~~-~~~~~~~~~~~~~~~~~~v~~SAT~~~ 217 (448)
+.+++|+|++|.+.... ....+..++..+......+++|++.++
T Consensus 97 ~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p 141 (234)
T PRK05642 97 QYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSP 141 (234)
T ss_pred hCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCH
Confidence 45789999999775432 234455666555444445667777544
No 228
>PRK08116 hypothetical protein; Validated
Probab=97.09 E-value=0.0093 Score=53.94 Aligned_cols=44 Identities=20% Similarity=0.179 Sum_probs=26.9
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHH
Q 013176 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQ 117 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~ 117 (448)
..+++.|++|+|||..+. ++.+.+... +..++++ +...+..++.
T Consensus 115 ~gl~l~G~~GtGKThLa~-aia~~l~~~-------~~~v~~~-~~~~ll~~i~ 158 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAA-CIANELIEK-------GVPVIFV-NFPQLLNRIK 158 (268)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHHHHc-------CCeEEEE-EHHHHHHHHH
Confidence 359999999999998643 455555442 3335444 4455554443
No 229
>PHA02533 17 large terminase protein; Provisional
Probab=97.07 E-value=0.0059 Score=60.61 Aligned_cols=149 Identities=14% Similarity=0.027 Sum_probs=84.6
Q ss_pred CCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhc
Q 013176 46 GFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGS 125 (448)
Q Consensus 46 ~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~ 125 (448)
+| .|+|+|++.+..+..++-.++..+=..|||.+....++..+... .+..+++++|+..-+..+.+.++.+..
T Consensus 57 Pf-~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~------~~~~v~i~A~~~~QA~~vF~~ik~~ie 129 (534)
T PHA02533 57 KV-QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFN------KDKNVGILAHKASMAAEVLDRTKQAIE 129 (534)
T ss_pred ec-CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhC------CCCEEEEEeCCHHHHHHHHHHHHHHHH
Confidence 35 68999999998876666667788889999988765444443322 255899999999998888888776543
Q ss_pred CCCc--eEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCCCHHHHHHHHHHcC
Q 013176 126 RAGI--RSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIR 203 (448)
Q Consensus 126 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~ 203 (448)
..+. +.. +.... .....+..+..|.+.|.+. ....-.+++++++||+|.+.+ +...+..+...+.
T Consensus 130 ~~P~l~~~~-i~~~~---~~~I~l~NGS~I~~lss~~-------~t~rG~~~~~liiDE~a~~~~--~~e~~~ai~p~la 196 (534)
T PHA02533 130 LLPDFLQPG-IVEWN---KGSIELENGSKIGAYASSP-------DAVRGNSFAMIYIDECAFIPN--FIDFWLAIQPVIS 196 (534)
T ss_pred hCHHHhhcc-eeecC---ccEEEeCCCCEEEEEeCCC-------CccCCCCCceEEEeccccCCC--HHHHHHHHHHHHH
Confidence 3221 100 00000 0001112344554444210 111122467899999997654 2344444444443
Q ss_pred C--CcceEEEecc
Q 013176 204 P--DRQTLYWSAT 214 (448)
Q Consensus 204 ~--~~~~v~~SAT 214 (448)
. ..+++.+|.+
T Consensus 197 sg~~~r~iiiSTp 209 (534)
T PHA02533 197 SGRSSKIIITSTP 209 (534)
T ss_pred cCCCceEEEEECC
Confidence 2 2345444444
No 230
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=97.06 E-value=0.0031 Score=64.95 Aligned_cols=71 Identities=17% Similarity=0.077 Sum_probs=55.2
Q ss_pred CCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhc
Q 013176 49 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGS 125 (448)
Q Consensus 49 ~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~ 125 (448)
.+++-|++++... ...++|.|+.|||||.+.+.-+...+..... ...++++++-|+..|.++.+++.++..
T Consensus 2 ~Ln~~Q~~av~~~--~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v----~p~~IL~lTFT~kAA~em~~Rl~~~l~ 72 (672)
T PRK10919 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCGY----QARHIAAVTFTNKAAREMKERVAQTLG 72 (672)
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHhcCC----CHHHeeeEechHHHHHHHHHHHHHHhC
Confidence 4789999998763 4678999999999999866666655543211 245799999999999999999987643
No 231
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.98 E-value=0.0043 Score=52.91 Aligned_cols=48 Identities=21% Similarity=0.176 Sum_probs=32.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013176 67 LIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (448)
Q Consensus 67 ~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~ 123 (448)
+++.||+|+|||...+-.+...+.. +..++|+.. .+-..++.+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~--------g~~v~~~s~-e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR--------GEPGLYVTL-EESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC--------CCcEEEEEC-CCCHHHHHHHHHHc
Confidence 6889999999997654333333322 556887755 45567777777765
No 232
>PRK11054 helD DNA helicase IV; Provisional
Probab=96.97 E-value=0.0041 Score=63.73 Aligned_cols=79 Identities=23% Similarity=0.181 Sum_probs=56.7
Q ss_pred CCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCC
Q 013176 49 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAG 128 (448)
Q Consensus 49 ~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~ 128 (448)
.+++-|++++... ..+++|.|..|||||.+.+-.+...+.... ..+.++++++.|+..+..+.+++.......+
T Consensus 196 ~L~~~Q~~av~~~--~~~~lV~agaGSGKT~vl~~r~ayLl~~~~----~~~~~IL~ltft~~AA~em~eRL~~~lg~~~ 269 (684)
T PRK11054 196 PLNPSQARAVVNG--EDSLLVLAGAGSGKTSVLVARAGWLLARGQ----AQPEQILLLAFGRQAAEEMDERIRERLGTED 269 (684)
T ss_pred CCCHHHHHHHhCC--CCCeEEEEeCCCCHHHHHHHHHHHHHHhCC----CCHHHeEEEeccHHHHHHHHHHHHHhcCCCC
Confidence 6899999998653 356899999999999886555544443321 1245799999999999999999887544333
Q ss_pred ceEEE
Q 013176 129 IRSTC 133 (448)
Q Consensus 129 ~~~~~ 133 (448)
+.+.+
T Consensus 270 v~v~T 274 (684)
T PRK11054 270 ITART 274 (684)
T ss_pred cEEEe
Confidence 44433
No 233
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.97 E-value=0.017 Score=51.23 Aligned_cols=40 Identities=18% Similarity=0.255 Sum_probs=25.0
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHH
Q 013176 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELA 113 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~ 113 (448)
..+++.+++|+|||..+. ++...+... +..++++ +...|.
T Consensus 100 ~~~~l~G~~GtGKThLa~-aia~~l~~~-------g~~v~~i-t~~~l~ 139 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAA-AICNELLLR-------GKSVLII-TVADIM 139 (244)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHHHhc-------CCeEEEE-EHHHHH
Confidence 468999999999997643 444444442 4456555 433443
No 234
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.96 E-value=0.0039 Score=57.76 Aligned_cols=47 Identities=19% Similarity=0.095 Sum_probs=29.9
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013176 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALK 122 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~ 122 (448)
.+.|+++|+|+|||..+-+.+-.. +..+.-+.++.+=+.++.+.+.+
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~~~-----------~~~f~~~sAv~~gvkdlr~i~e~ 95 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAGTT-----------NAAFEALSAVTSGVKDLREIIEE 95 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHHHhh-----------CCceEEeccccccHHHHHHHHHH
Confidence 378999999999998654433221 33356666665555555555554
No 235
>PRK08727 hypothetical protein; Validated
Probab=96.95 E-value=0.0053 Score=54.38 Aligned_cols=18 Identities=33% Similarity=0.195 Sum_probs=14.6
Q ss_pred CcEEEEcCCCChHHHHHH
Q 013176 65 RDLIGIAETGSGKTLSYL 82 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~ 82 (448)
+.+++.|++|+|||....
T Consensus 42 ~~l~l~G~~G~GKThL~~ 59 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLAL 59 (233)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 358999999999997543
No 236
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.94 E-value=0.0049 Score=55.18 Aligned_cols=51 Identities=16% Similarity=0.230 Sum_probs=33.6
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013176 63 KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALK 122 (448)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~ 122 (448)
++.++++.||+|+|||..+.. +...+.+. +. .++++++.+|+.++...+..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~A-i~~~l~~~-------g~-sv~f~~~~el~~~Lk~~~~~ 154 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIA-IGNELLKA-------GI-SVLFITAPDLLSKLKAAFDE 154 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHH-HHHHHHHc-------CC-eEEEEEHHHHHHHHHHHHhc
Confidence 567999999999999987443 33344442 33 44555777787766655544
No 237
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.89 E-value=0.0063 Score=54.00 Aligned_cols=18 Identities=11% Similarity=0.115 Sum_probs=15.1
Q ss_pred CcEEEEcCCCChHHHHHH
Q 013176 65 RDLIGIAETGSGKTLSYL 82 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~ 82 (448)
..++++||+|+|||....
T Consensus 46 ~~l~l~Gp~G~GKThLl~ 63 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLH 63 (235)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 578999999999997643
No 238
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.87 E-value=0.012 Score=65.00 Aligned_cols=63 Identities=25% Similarity=0.262 Sum_probs=44.4
Q ss_pred CCcHHHHhHHHHhhcC--CcEEEEcCCCChHHHHHH--HHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHH
Q 013176 49 EPTPIQAQGWPMALKG--RDLIGIAETGSGKTLSYL--LPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQ 117 (448)
Q Consensus 49 ~~~~~Q~~~i~~~~~~--~~~lv~~~tGsGKT~~~~--l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~ 117 (448)
.+++.|++|+..++.. +-++|.+..|+|||.+.- +.++..+.. ..+..++.++||-.-+..+.
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e------~~g~~V~glAPTgkAa~~L~ 901 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPE------SERPRVVGLGPTHRAVGEMR 901 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhh------ccCceEEEEechHHHHHHHH
Confidence 6899999999999865 567888999999997631 222222221 12567899999877665553
No 239
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.85 E-value=0.12 Score=46.63 Aligned_cols=156 Identities=18% Similarity=0.198 Sum_probs=80.8
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcC-c--HHHHHHHHHHHHHhhcCCCceEEEEEcCCCch
Q 013176 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAP-T--RELAVQIQEEALKFGSRAGIRSTCIYGGAPKG 141 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P-~--~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (448)
..+++.+++|+|||..+...+.. +..+ +.++.++.. + ...+.|+...... .++.+.
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~-l~~~-------~~~v~~i~~D~~ri~~~~ql~~~~~~----~~~~~~--------- 134 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQ-FHGK-------KKTVGFITTDHSRIGTVQQLQDYVKT----IGFEVI--------- 134 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHH-HHHc-------CCeEEEEecCCCCHHHHHHHHHHhhh----cCceEE---------
Confidence 56788899999999865543332 2221 333444433 2 2455555543333 232221
Q ss_pred HhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCC-CHHHHHHHHHHcCCCcceEEEeccCch-HH
Q 013176 142 PQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMG-FEPQIRKIVTQIRPDRQTLYWSATWPR-EV 219 (448)
Q Consensus 142 ~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~-~~~~~~~~~~~~~~~~~~v~~SAT~~~-~~ 219 (448)
...+++.+.+.+... ....++++++||.+=+..... ....+..++....+...++.++||... +.
T Consensus 135 ------------~~~~~~~l~~~l~~l-~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~ 201 (270)
T PRK06731 135 ------------AVRDEAAMTRALTYF-KEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDM 201 (270)
T ss_pred ------------ecCCHHHHHHHHHHH-HhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHH
Confidence 112444444433321 112357899999997653221 233344444444555557789998654 55
Q ss_pred HHHHHHHcCCCeEEEeCCcccccccCcceEEEEecchhHHHHHHHHHHh
Q 013176 220 ETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKE 268 (448)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 268 (448)
...++.+-. ...-...+...++..+.-.++.+...
T Consensus 202 ~~~~~~f~~--------------~~~~~~I~TKlDet~~~G~~l~~~~~ 236 (270)
T PRK06731 202 IEIITNFKD--------------IHIDGIVFTKFDETASSGELLKIPAV 236 (270)
T ss_pred HHHHHHhCC--------------CCCCEEEEEeecCCCCccHHHHHHHH
Confidence 555555421 11123344455555666666666654
No 240
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.84 E-value=0.0035 Score=59.56 Aligned_cols=59 Identities=25% Similarity=0.317 Sum_probs=41.7
Q ss_pred CcHHHHhHHHHh------hcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHH
Q 013176 50 PTPIQAQGWPMA------LKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQI 116 (448)
Q Consensus 50 ~~~~Q~~~i~~~------~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~ 116 (448)
|++-|++++..+ .++.++++.++-|+|||+. +-.+...... .+..+++++||-.-|..+
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l--~~~i~~~~~~------~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFL--IKAIIDYLRS------RGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHH--HHHHHHHhcc------ccceEEEecchHHHHHhc
Confidence 678899998888 5677899999999999975 3333332221 256788888876555443
No 241
>PRK06893 DNA replication initiation factor; Validated
Probab=96.83 E-value=0.0056 Score=54.11 Aligned_cols=46 Identities=17% Similarity=0.283 Sum_probs=27.6
Q ss_pred CCccEEEEecccccccCC-CHHHHHHHHHHcC-CCcceEEEeccCchH
Q 013176 173 RRVTYLVLDEADRMLDMG-FEPQIRKIVTQIR-PDRQTLYWSATWPRE 218 (448)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~-~~~~~~~~~~~~~-~~~~~v~~SAT~~~~ 218 (448)
.+.+++++||+|.+.... ....+..++.... ...+++++|++.++.
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~ 137 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPH 137 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChH
Confidence 356899999999875432 2234444444443 334566777776544
No 242
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.83 E-value=0.0082 Score=58.37 Aligned_cols=42 Identities=19% Similarity=0.203 Sum_probs=26.2
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHH
Q 013176 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQ 115 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q 115 (448)
+.+++.||+|+|||.... ++...+... +.+++++.. ..+..+
T Consensus 142 npl~L~G~~G~GKTHLl~-Ai~~~l~~~-------~~~v~yi~~-~~f~~~ 183 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQ-AAVHALRES-------GGKILYVRS-ELFTEH 183 (445)
T ss_pred ceEEEEcCCCCCHHHHHH-HHHHHHHHc-------CCCEEEeeH-HHHHHH
Confidence 458999999999997533 444444432 455777653 444443
No 243
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.81 E-value=0.017 Score=47.84 Aligned_cols=38 Identities=26% Similarity=0.368 Sum_probs=23.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHH
Q 013176 67 LIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTREL 112 (448)
Q Consensus 67 ~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L 112 (448)
+++.+++|+|||..... ++..+.. .+..++++......
T Consensus 2 ~~i~G~~G~GKT~l~~~-i~~~~~~-------~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQ-LALNIAT-------KGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHH-HHHHHHh-------cCCEEEEEECCcch
Confidence 57899999999975433 3333222 14557777654433
No 244
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.78 E-value=0.025 Score=49.99 Aligned_cols=43 Identities=14% Similarity=0.257 Sum_probs=25.2
Q ss_pred CccEEEEecccccccCCCHHHHHHHHHHcCCCcc-eEEEeccCch
Q 013176 174 RVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQ-TLYWSATWPR 217 (448)
Q Consensus 174 ~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~-~v~~SAT~~~ 217 (448)
..+++|+||+|.+.... ...+..++........ +++++++.++
T Consensus 90 ~~~~liiDdi~~l~~~~-~~~L~~~~~~~~~~~~~~vl~~~~~~~ 133 (227)
T PRK08903 90 EAELYAVDDVERLDDAQ-QIALFNLFNRVRAHGQGALLVAGPAAP 133 (227)
T ss_pred cCCEEEEeChhhcCchH-HHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 35789999999875433 3344444444333333 4666776543
No 245
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.76 E-value=0.0026 Score=55.66 Aligned_cols=106 Identities=19% Similarity=0.232 Sum_probs=56.7
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHH
Q 013176 66 DLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIR 145 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (448)
.+++.||+|+|||.. +-++...+.+.. .+.+++++.. .+........++.
T Consensus 36 ~l~l~G~~G~GKTHL-L~Ai~~~~~~~~-----~~~~v~y~~~-~~f~~~~~~~~~~----------------------- 85 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHL-LQAIANEAQKQH-----PGKRVVYLSA-EEFIREFADALRD----------------------- 85 (219)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHHHHHHC-----TTS-EEEEEH-HHHHHHHHHHHHT-----------------------
T ss_pred ceEEECCCCCCHHHH-HHHHHHHHHhcc-----ccccceeecH-HHHHHHHHHHHHc-----------------------
Confidence 489999999999984 444444443321 1456777644 3444333333332
Q ss_pred HHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCC-CHHHHHHHHHHcC-CCcceEEEeccCchH
Q 013176 146 DLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMG-FEPQIRKIVTQIR-PDRQTLYWSATWPRE 218 (448)
Q Consensus 146 ~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~-~~~~~~~~~~~~~-~~~~~v~~SAT~~~~ 218 (448)
...+.|.+ .+...+++++|.+|.+.... ....+..++..+. .+.++++.|...|..
T Consensus 86 ----------~~~~~~~~-------~~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~ 143 (219)
T PF00308_consen 86 ----------GEIEEFKD-------RLRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSE 143 (219)
T ss_dssp ----------TSHHHHHH-------HHCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTT
T ss_pred ----------ccchhhhh-------hhhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCcc
Confidence 01112212 13457899999999886532 2234444444432 455666666565544
No 246
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=96.74 E-value=0.0018 Score=70.48 Aligned_cols=93 Identities=27% Similarity=0.344 Sum_probs=76.0
Q ss_pred cEEEEecchhHHHHHHHHHHhC-CCCeEEEcCCCC-----------HHHHHHHHHHHhcCCCCEEEEeccccCCCCCCCc
Q 013176 274 RILIFTETKKGCDQVTRQLRMD-GWPALSIHGDKN-----------QSERDWVLAEFRSGRSPIMTATDVAARGLDVKDI 341 (448)
Q Consensus 274 k~lVf~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~-----------~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~ 341 (448)
..++|++....+....+.+... ...+..+.|.+. +..+.+++..|....+++|++|.++.+|+|++.+
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~ 373 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKC 373 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhh
Confidence 4589999999998888888765 223333444332 2346678899999999999999999999999999
Q ss_pred cEEEEcCCCCChhhhhhcccccCCC
Q 013176 342 KCVVNYDFPTSLEDYVHRIGRTGRA 366 (448)
Q Consensus 342 ~~Vi~~~~p~s~~~~~Q~~GR~~R~ 366 (448)
+.++.++.|.....|+|..||+.+.
T Consensus 374 ~~~~~~~~~~~~~~~vq~~~r~~~~ 398 (1606)
T KOG0701|consen 374 NLVVLFDAPTYYRSYVQKKGRARAA 398 (1606)
T ss_pred hhheeccCcchHHHHHHhhcccccc
Confidence 9999999999999999999999664
No 247
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.73 E-value=0.021 Score=58.46 Aligned_cols=128 Identities=19% Similarity=0.183 Sum_probs=64.6
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcC-cHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhH
Q 013176 66 DLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAP-TRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQI 144 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P-~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (448)
-+++++|||+|||.+....+....... .+.++.++.. +.-.. ..++++.+....++.+
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA~~~~~~~------G~kkV~lit~Dt~Rig--A~eQL~~~a~~~gvpv------------- 245 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLAARCVARE------GADQLALLTTDSFRIG--ALEQLRIYGRILGVPV------------- 245 (767)
T ss_pred EEEEECCCCCcHHHHHHHHHhhHHHHc------CCCeEEEecCcccchH--HHHHHHHHHHhCCCCc-------------
Confidence 467889999999987544333222221 1234544433 22111 1233444433333322
Q ss_pred HHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCC-CHHHHHHHHHHcCCCcceEEEeccCchH-HHHH
Q 013176 145 RDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMG-FEPQIRKIVTQIRPDRQTLYWSATWPRE-VETL 222 (448)
Q Consensus 145 ~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~-~~~~~~~~~~~~~~~~~~v~~SAT~~~~-~~~~ 222 (448)
.++.+|+.+.+.+.. +.+.++|+||=+=+..... ....+..+.....+...++.++||...+ +.+.
T Consensus 246 --------~~~~~~~~l~~al~~----~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i 313 (767)
T PRK14723 246 --------HAVKDAADLRFALAA----LGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEV 313 (767)
T ss_pred --------cccCCHHHHHHHHHH----hcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHH
Confidence 123366666555542 3456899999888654321 2223333333334556678888987543 3334
Q ss_pred HHHH
Q 013176 223 ARQF 226 (448)
Q Consensus 223 ~~~~ 226 (448)
...+
T Consensus 314 ~~~f 317 (767)
T PRK14723 314 VHAY 317 (767)
T ss_pred HHHH
Confidence 4444
No 248
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.73 E-value=0.013 Score=57.25 Aligned_cols=50 Identities=20% Similarity=0.090 Sum_probs=29.9
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHH
Q 013176 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEAL 121 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~ 121 (448)
+.+++.|++|+|||... -++...+.... .+.+++++.+ ..+..++...+.
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~~-----~~~~v~yv~~-~~f~~~~~~~l~ 191 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESNF-----SDLKVSYMSG-DEFARKAVDILQ 191 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHhC-----CCCeEEEEEH-HHHHHHHHHHHH
Confidence 35889999999999753 34444443321 1456776655 556555554443
No 249
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=96.70 E-value=0.0044 Score=62.05 Aligned_cols=127 Identities=17% Similarity=0.127 Sum_probs=75.8
Q ss_pred CCcHHHHhHHHHhhcC--CcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHH-HHHHHhhc
Q 013176 49 EPTPIQAQGWPMALKG--RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQ-EEALKFGS 125 (448)
Q Consensus 49 ~~~~~Q~~~i~~~~~~--~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~-~~~~~~~~ 125 (448)
..+|||.+.++++... +.+.++.++-+|||.+.+..+...+... ...+|++.||..+++++. .++..+..
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~-------P~~~l~v~Pt~~~a~~~~~~rl~Pmi~ 88 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQD-------PGPMLYVQPTDDAAKDFSKERLDPMIR 88 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEeC-------CCCEEEEEEcHHHHHHHHHHHHHHHHH
Confidence 6789999999998876 4788899999999996554444444442 456899999999999887 44666544
Q ss_pred CCCceEEEEEc---CCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEeccccccc
Q 013176 126 RAGIRSTCIYG---GAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLD 188 (448)
Q Consensus 126 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~ 188 (448)
..+.--..+.. .........+...+..+.+....+- ..+.-..+.++++||++.+..
T Consensus 89 ~sp~l~~~~~~~~~~~~~~t~~~k~f~gg~l~~~ga~S~------~~l~s~~~r~~~~DEvD~~p~ 148 (557)
T PF05876_consen 89 ASPVLRRKLSPSKSRDSGNTILYKRFPGGFLYLVGANSP------SNLRSRPARYLLLDEVDRYPD 148 (557)
T ss_pred hCHHHHHHhCchhhcccCCchhheecCCCEEEEEeCCCC------cccccCCcCEEEEechhhccc
Confidence 33211111111 1111111111112333444442111 112234578999999999854
No 250
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.69 E-value=0.0099 Score=55.35 Aligned_cols=35 Identities=20% Similarity=0.108 Sum_probs=27.8
Q ss_pred CCcHHHHhHHHHhhcCC----cEEEEcCCCChHHHHHHH
Q 013176 49 EPTPIQAQGWPMALKGR----DLIGIAETGSGKTLSYLL 83 (448)
Q Consensus 49 ~~~~~Q~~~i~~~~~~~----~~lv~~~tGsGKT~~~~l 83 (448)
.++|||...+..+.+.+ ..++.+|.|.|||..+..
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~ 41 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAER 41 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHH
Confidence 35899999998888653 478899999999976544
No 251
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=96.69 E-value=0.013 Score=60.69 Aligned_cols=84 Identities=18% Similarity=0.260 Sum_probs=69.1
Q ss_pred HHHHHhhhcCCcEEEEecchhHHHHHHHHHHhC----CCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEec-cccCCCC
Q 013176 263 IKLLKEVMDGSRILIFTETKKGCDQVTRQLRMD----GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD-VAARGLD 337 (448)
Q Consensus 263 ~~~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-~~~~Gid 337 (448)
..++.....+.+++|.++|+.-|.+.++.+++. ++++..++|+++..+|.++++.+.+|+.+|+|+|. .+...+.
T Consensus 301 ~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~ 380 (681)
T PRK10917 301 LAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVE 380 (681)
T ss_pred HHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccch
Confidence 334444456779999999999999888877653 68899999999999999999999999999999995 4556677
Q ss_pred CCCccEEEE
Q 013176 338 VKDIKCVVN 346 (448)
Q Consensus 338 i~~~~~Vi~ 346 (448)
++++.+||.
T Consensus 381 ~~~l~lvVI 389 (681)
T PRK10917 381 FHNLGLVII 389 (681)
T ss_pred hcccceEEE
Confidence 888888773
No 252
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.68 E-value=0.16 Score=49.88 Aligned_cols=164 Identities=18% Similarity=0.174 Sum_probs=76.7
Q ss_pred cccccCCCCHHHHHHHHH-CCC----CCCcHHHHhHHHH---------hhcCCcEEEEcCCCChHHHHHHHHHHHHhhcC
Q 013176 27 RIFQEANFPDYCLEVIAK-LGF----VEPTPIQAQGWPM---------ALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQ 92 (448)
Q Consensus 27 ~~~~~~~l~~~l~~~~~~-~~~----~~~~~~Q~~~i~~---------~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~ 92 (448)
+.+...++++.+.+.+-. +.- ...+.+=.+.+.. +..++.+.+++|+|+|||......+.......
T Consensus 299 ~~L~~~Gvs~~la~~L~~~l~~~~~~~~~~~~l~~~L~~~l~v~~~~~l~~G~vIaLVGPtGvGKTTtaakLAa~la~~~ 378 (559)
T PRK12727 299 ELMDDYGFDAGLTRDVAMQIPADTELHRGRGLMLGLLSKRLPVAPVDPLERGGVIALVGPTGAGKTTTIAKLAQRFAAQH 378 (559)
T ss_pred HHHHHCCCCHHHHHHHHHhhhcccchhhHHHHHHHHHHHhcCcCccccccCCCEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 456667888888877643 211 1111111122211 22346788889999999987543332222221
Q ss_pred CCccCCCCceEEEEc-Cc-HHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHcccc
Q 013176 93 PRLVQGEGPIVLVLA-PT-RELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHT 170 (448)
Q Consensus 93 ~~~~~~~~~~vlil~-P~-~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~ 170 (448)
.+.++.++. .+ +.-+ .++++.+....++.+.. +-+++.+...+..
T Consensus 379 ------~gkkVaLIdtDtyRigA---~EQLk~ya~iLgv~v~~---------------------a~d~~~L~~aL~~--- 425 (559)
T PRK12727 379 ------APRDVALVTTDTQRVGG---REQLHSYGRQLGIAVHE---------------------ADSAESLLDLLER--- 425 (559)
T ss_pred ------CCCceEEEecccccccH---HHHHHHhhcccCceeEe---------------------cCcHHHHHHHHHH---
Confidence 123344443 22 2222 23344443333332211 1123334444432
Q ss_pred CCCCccEEEEecccccccCC-CHHHHHHHHHHcCCCcceEEEeccCch-HHHHHHHH
Q 013176 171 NLRRVTYLVLDEADRMLDMG-FEPQIRKIVTQIRPDRQTLYWSATWPR-EVETLARQ 225 (448)
Q Consensus 171 ~~~~~~~iIvDE~h~~~~~~-~~~~~~~~~~~~~~~~~~v~~SAT~~~-~~~~~~~~ 225 (448)
+.++++|+||.+-...... ....+..+.. ......+++++++... +....+..
T Consensus 426 -l~~~DLVLIDTaG~s~~D~~l~eeL~~L~a-a~~~a~lLVLpAtss~~Dl~eii~~ 480 (559)
T PRK12727 426 -LRDYKLVLIDTAGMGQRDRALAAQLNWLRA-ARQVTSLLVLPANAHFSDLDEVVRR 480 (559)
T ss_pred -hccCCEEEecCCCcchhhHHHHHHHHHHHH-hhcCCcEEEEECCCChhHHHHHHHH
Confidence 3457899999998643221 1112222222 2244567778888643 33434433
No 253
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=96.67 E-value=0.011 Score=61.32 Aligned_cols=70 Identities=17% Similarity=0.072 Sum_probs=53.8
Q ss_pred CcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhc
Q 013176 50 PTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGS 125 (448)
Q Consensus 50 ~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~ 125 (448)
+++-|++++.. ...+++|.|..|||||.+.+--+...+..... ....+++++.|+..+.++.+++.+...
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~----~p~~IL~vTFt~~Aa~em~~Rl~~~l~ 71 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGY----KARNIAAVTFTNKAAREMKERVAKTLG 71 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCC----CHHHeEEEeccHHHHHHHHHHHHHHhC
Confidence 68899999875 34689999999999999866666555543211 245799999999999999999987643
No 254
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.66 E-value=0.027 Score=63.11 Aligned_cols=65 Identities=26% Similarity=0.279 Sum_probs=44.7
Q ss_pred CCcHHHHhHHHHhhcC--CcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHH
Q 013176 49 EPTPIQAQGWPMALKG--RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQ 117 (448)
Q Consensus 49 ~~~~~Q~~~i~~~~~~--~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~ 117 (448)
.+++.|++|+..++.. +-++|.+..|+|||.. +-.++..+.... ...+..++.++||-.-+.++.
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~-l~~v~~~~~~l~---~~~~~~V~glAPTgrAAk~L~ 1033 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQ-FRAVMSAVNTLP---ESERPRVVGLGPTHRAVGEMR 1033 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHH-HHHHHHHHHHhh---cccCceEEEECCcHHHHHHHH
Confidence 6899999999999975 4577789999999975 333333332110 012456899999877765543
No 255
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=96.66 E-value=0.025 Score=47.27 Aligned_cols=88 Identities=26% Similarity=0.277 Sum_probs=51.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHHH
Q 013176 67 LIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRD 146 (448)
Q Consensus 67 ~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (448)
.++.+|+.||||.. ++-.+..+... +.++++..|-..- ..+...+....|.+.
T Consensus 7 ~~i~gpM~SGKT~e-Ll~r~~~~~~~-------g~~v~vfkp~iD~-------------R~~~~~V~Sr~G~~~------ 59 (201)
T COG1435 7 EFIYGPMFSGKTEE-LLRRARRYKEA-------GMKVLVFKPAIDT-------------RYGVGKVSSRIGLSS------ 59 (201)
T ss_pred EEEEccCcCcchHH-HHHHHHHHHHc-------CCeEEEEeccccc-------------ccccceeeeccCCcc------
Confidence 47889999999986 44344443332 6678888883211 112112222222211
Q ss_pred HhcCCcEEEEccHHHHHHHHccccCCCCccEEEEeccccc
Q 013176 147 LRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRM 186 (448)
Q Consensus 147 ~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~ 186 (448)
..++|-++..+.+.+........ .+.|.|||||-+
T Consensus 60 ----~A~~i~~~~~i~~~i~~~~~~~~-~~~v~IDEaQF~ 94 (201)
T COG1435 60 ----EAVVIPSDTDIFDEIAALHEKPP-VDCVLIDEAQFF 94 (201)
T ss_pred ----cceecCChHHHHHHHHhcccCCC-cCEEEEehhHhC
Confidence 23566677777777665433322 789999999974
No 256
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=96.60 E-value=0.024 Score=58.39 Aligned_cols=22 Identities=23% Similarity=0.193 Sum_probs=15.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHHh
Q 013176 67 LIGIAETGSGKTLSYLLPAFVHV 89 (448)
Q Consensus 67 ~lv~~~tGsGKT~~~~l~~l~~~ 89 (448)
++|.|+||+|||.+.-. ++..+
T Consensus 784 LYIyG~PGTGKTATVK~-VLrEL 805 (1164)
T PTZ00112 784 LYISGMPGTGKTATVYS-VIQLL 805 (1164)
T ss_pred EEEECCCCCCHHHHHHH-HHHHH
Confidence 35899999999987443 44444
No 257
>PRK09183 transposase/IS protein; Provisional
Probab=96.59 E-value=0.012 Score=52.93 Aligned_cols=24 Identities=17% Similarity=0.264 Sum_probs=18.9
Q ss_pred hhcCCcEEEEcCCCChHHHHHHHH
Q 013176 61 ALKGRDLIGIAETGSGKTLSYLLP 84 (448)
Q Consensus 61 ~~~~~~~lv~~~tGsGKT~~~~l~ 84 (448)
+..+.++++.||+|+|||..+...
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al 122 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIAL 122 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHH
Confidence 445678999999999999765443
No 258
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.58 E-value=0.0079 Score=59.04 Aligned_cols=47 Identities=13% Similarity=0.076 Sum_probs=27.1
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHH
Q 013176 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQE 118 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~ 118 (448)
+.+++.||+|+|||..+. ++...+.... .+..++++ +...+..++..
T Consensus 149 ~~l~l~G~~G~GKThL~~-ai~~~~~~~~-----~~~~v~yi-~~~~~~~~~~~ 195 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLH-AIGNYILEKN-----PNAKVVYV-TSEKFTNDFVN 195 (450)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHHhC-----CCCeEEEE-EHHHHHHHHHH
Confidence 458999999999998633 3444443321 13456666 43455544333
No 259
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=96.55 E-value=0.008 Score=53.05 Aligned_cols=87 Identities=24% Similarity=0.345 Sum_probs=65.4
Q ss_pred CCCceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCC-CchHhHHHHh-cCCcEEEEccHHHHHHHHccccCCCCc
Q 013176 98 GEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGA-PKGPQIRDLR-RGVEIVIATPGRLIDMLEAQHTNLRRV 175 (448)
Q Consensus 98 ~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~ 175 (448)
...|.+|||+.+.-=|.++.+.++.+... +..+..+++.. ..+++...+. ...+|.|+||+++..++....+.+.++
T Consensus 124 ~gsP~~lvvs~SalRa~dl~R~l~~~~~k-~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l 202 (252)
T PF14617_consen 124 KGSPHVLVVSSSALRAADLIRALRSFKGK-DCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSNL 202 (252)
T ss_pred CCCCEEEEEcchHHHHHHHHHHHHhhccC-CchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcccC
Confidence 34788999999888888888888887321 22344444443 3345555555 368999999999999999999999999
Q ss_pred cEEEEecccc
Q 013176 176 TYLVLDEADR 185 (448)
Q Consensus 176 ~~iIvDE~h~ 185 (448)
.+||+|--|.
T Consensus 203 ~~ivlD~s~~ 212 (252)
T PF14617_consen 203 KRIVLDWSYL 212 (252)
T ss_pred eEEEEcCCcc
Confidence 9999998773
No 260
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=96.53 E-value=0.012 Score=65.05 Aligned_cols=123 Identities=19% Similarity=0.126 Sum_probs=80.0
Q ss_pred CcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCCc
Q 013176 50 PTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGI 129 (448)
Q Consensus 50 ~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~ 129 (448)
.++-|++++.. .+.+++|.|..|||||.+.+--++..+.... ...++++++=|+..+.++.+++.+..... +
T Consensus 2 ~t~~Q~~ai~~--~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~-----~~~~il~~tFt~~aa~e~~~ri~~~l~~~-~ 73 (1232)
T TIGR02785 2 WTDEQWQAIYT--RGQNILVSASAGSGKTAVLVERIIKKILRGV-----DIDRLLVVTFTNAAAREMKERIEEALQKA-L 73 (1232)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcCC-----CHhhEEEEeccHHHHHHHHHHHHHHHHHH-H
Confidence 57899999983 5789999999999999987666666554321 13569999999999999999887643211 0
Q ss_pred eEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCC--CccEEEEecccc
Q 013176 130 RSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLR--RVTYLVLDEADR 185 (448)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~--~~~~iIvDE~h~ 185 (448)
. .........+.+..-...-|+|.++|...+.+.+...- ++++=|.||...
T Consensus 74 ~-----~~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 74 Q-----QEPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred h-----cCchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 0 00011112222333356789999999766554443221 235567888774
No 261
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.50 E-value=0.023 Score=54.92 Aligned_cols=52 Identities=21% Similarity=0.342 Sum_probs=31.6
Q ss_pred ccEEEEecccccccC-CCHHHHHHHHHHcCCCcceEEEeccCchHHHHHHHHH
Q 013176 175 VTYLVLDEADRMLDM-GFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQF 226 (448)
Q Consensus 175 ~~~iIvDE~h~~~~~-~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~ 226 (448)
.++||||.+-+.... ..-..+..+.....+..-++.+.|+...+....+..+
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~F 228 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAF 228 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHHH
Confidence 378999999543321 1233445555555667777888888766554555443
No 262
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.49 E-value=0.026 Score=49.78 Aligned_cols=19 Identities=37% Similarity=0.309 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 013176 64 GRDLIGIAETGSGKTLSYL 82 (448)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~ 82 (448)
...+++.||+|+|||..+.
T Consensus 38 ~~~lll~G~~G~GKT~la~ 56 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQ 56 (226)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4679999999999997644
No 263
>PRK14873 primosome assembly protein PriA; Provisional
Probab=96.49 E-value=0.028 Score=57.37 Aligned_cols=93 Identities=17% Similarity=0.206 Sum_probs=74.4
Q ss_pred hhHHHHHHHHHHhhh-cCCcEEEEecchhHHHHHHHHHHhC-C-CCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccc
Q 013176 256 AEKYNRLIKLLKEVM-DGSRILIFTETKKGCDQVTRQLRMD-G-WPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVA 332 (448)
Q Consensus 256 ~~~~~~l~~~l~~~~-~~~k~lVf~~~~~~~~~l~~~L~~~-~-~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~ 332 (448)
+.|-+..++++.+.. .++.+||.++.+..+..+.+.|++. + ..+.++|+++++.+|.+......+|+.+|+|.|..+
T Consensus 171 SGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSA 250 (665)
T PRK14873 171 EDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSA 250 (665)
T ss_pred CcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEccee
Confidence 355566666666554 3779999999999999999999876 3 679999999999999999999999999999999554
Q ss_pred cCCCCCCCccEEEEcCC
Q 013176 333 ARGLDVKDIKCVVNYDF 349 (448)
Q Consensus 333 ~~Gidi~~~~~Vi~~~~ 349 (448)
.. .-++++..||..+-
T Consensus 251 vF-aP~~~LgLIIvdEE 266 (665)
T PRK14873 251 VF-APVEDLGLVAIWDD 266 (665)
T ss_pred EE-eccCCCCEEEEEcC
Confidence 22 44557777776664
No 264
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.46 E-value=0.013 Score=56.13 Aligned_cols=33 Identities=18% Similarity=0.122 Sum_probs=26.7
Q ss_pred CcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHH
Q 013176 50 PTPIQAQGWPMALKGRDLIGIAETGSGKTLSYL 82 (448)
Q Consensus 50 ~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~ 82 (448)
+.......+..+..++++++.+|+|+|||..+.
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 455566777778888999999999999997654
No 265
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=96.45 E-value=0.11 Score=52.07 Aligned_cols=70 Identities=11% Similarity=0.051 Sum_probs=47.8
Q ss_pred CCcHHHHhHHHHhh---cCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhc
Q 013176 49 EPTPIQAQGWPMAL---KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGS 125 (448)
Q Consensus 49 ~~~~~Q~~~i~~~~---~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~ 125 (448)
.|+|.=.+-++.+. +.+-.++.+|=|-|||.+..+.+...+... +.+|+|.+|...-+.++.+.++.+..
T Consensus 169 ~~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f~-------Gi~IlvTAH~~~ts~evF~rv~~~le 241 (752)
T PHA03333 169 APSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISFL-------EIDIVVQAQRKTMCLTLYNRVETVVH 241 (752)
T ss_pred CCChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHhc-------CCeEEEECCChhhHHHHHHHHHHHHH
Confidence 34554444444443 345667789999999987665555443321 56799999999989888888777654
No 266
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=96.43 E-value=0.014 Score=57.65 Aligned_cols=71 Identities=21% Similarity=0.122 Sum_probs=52.1
Q ss_pred HHHHhHHHHhhc-----C----CcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013176 52 PIQAQGWPMALK-----G----RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALK 122 (448)
Q Consensus 52 ~~Q~~~i~~~~~-----~----~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~ 122 (448)
|+|+-++..++- + +.+++..|=+-|||......++..+.-.. ..+..++++++++.-+....+.+..
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g----~~~~~i~~~A~~~~QA~~~f~~~~~ 76 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDG----EPGAEIYCAANTRDQAKIVFDEAKK 76 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCC----ccCceEEEEeCCHHHHHHHHHHHHH
Confidence 678888777662 1 35788889999999866655555543321 1367899999999999999998888
Q ss_pred hhcC
Q 013176 123 FGSR 126 (448)
Q Consensus 123 ~~~~ 126 (448)
+...
T Consensus 77 ~i~~ 80 (477)
T PF03354_consen 77 MIEA 80 (477)
T ss_pred HHHh
Confidence 7654
No 267
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.42 E-value=0.016 Score=49.88 Aligned_cols=18 Identities=22% Similarity=0.167 Sum_probs=14.6
Q ss_pred CcEEEEcCCCChHHHHHH
Q 013176 65 RDLIGIAETGSGKTLSYL 82 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~ 82 (448)
.+++++||+|.|||..+.
T Consensus 51 ~h~lf~GPPG~GKTTLA~ 68 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLAR 68 (233)
T ss_dssp -EEEEESSTTSSHHHHHH
T ss_pred ceEEEECCCccchhHHHH
Confidence 379999999999997543
No 268
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.41 E-value=0.032 Score=51.56 Aligned_cols=37 Identities=24% Similarity=0.310 Sum_probs=28.0
Q ss_pred CCCCcHHHHhHHHHhhc----CC---cEEEEcCCCChHHHHHHH
Q 013176 47 FVEPTPIQAQGWPMALK----GR---DLIGIAETGSGKTLSYLL 83 (448)
Q Consensus 47 ~~~~~~~Q~~~i~~~~~----~~---~~lv~~~tGsGKT~~~~l 83 (448)
++.++|||..++..+.. ++ ..++.+|.|.||+..+..
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~ 45 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALA 45 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHH
Confidence 34689999998877663 32 478899999999976543
No 269
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.41 E-value=0.018 Score=57.47 Aligned_cols=106 Identities=15% Similarity=0.132 Sum_probs=55.5
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHH
Q 013176 66 DLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIR 145 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (448)
.+++.|++|+|||... -++.+.+.... .+.+++++. ...++.++...+..-
T Consensus 316 pL~LyG~sGsGKTHLL-~AIa~~a~~~~-----~g~~V~Yit-aeef~~el~~al~~~---------------------- 366 (617)
T PRK14086 316 PLFIYGESGLGKTHLL-HAIGHYARRLY-----PGTRVRYVS-SEEFTNEFINSIRDG---------------------- 366 (617)
T ss_pred cEEEECCCCCCHHHHH-HHHHHHHHHhC-----CCCeEEEee-HHHHHHHHHHHHHhc----------------------
Confidence 4889999999999752 33344333211 144566654 355555444333220
Q ss_pred HHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCC-CHHHHHHHHHHcCC-CcceEEEeccCchH
Q 013176 146 DLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMG-FEPQIRKIVTQIRP-DRQTLYWSATWPRE 218 (448)
Q Consensus 146 ~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~-~~~~~~~~~~~~~~-~~~~v~~SAT~~~~ 218 (448)
..+.|.. .+.++++|+|||+|.+.... ....+..++..+.. +.++|+.|-..+..
T Consensus 367 -----------~~~~f~~-------~y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~e 423 (617)
T PRK14086 367 -----------KGDSFRR-------RYREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQ 423 (617)
T ss_pred -----------cHHHHHH-------HhhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHh
Confidence 0111111 13347899999999876533 22334445444433 45555544444433
No 270
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=96.40 E-value=0.02 Score=59.93 Aligned_cols=72 Identities=19% Similarity=0.130 Sum_probs=55.8
Q ss_pred CCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhc
Q 013176 48 VEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGS 125 (448)
Q Consensus 48 ~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~ 125 (448)
..|+|-|++++... ...++|.|..|||||.+.+.-+...+..... ...++++++-|+..+.++.+++.++..
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i----~P~~IL~lTFT~kAA~em~~Rl~~~~~ 74 (726)
T TIGR01073 3 AHLNPEQREAVKTT--EGPLLIMAGAGSGKTRVLTHRIAHLIAEKNV----APWNILAITFTNKAAREMKERVEKLLG 74 (726)
T ss_pred cccCHHHHHHHhCC--CCCEEEEeCCCCCHHHHHHHHHHHHHHcCCC----CHHHeeeeeccHHHHHHHHHHHHHHhc
Confidence 35899999999753 4679999999999999866666655543211 145799999999999999999988754
No 271
>PTZ00293 thymidine kinase; Provisional
Probab=96.40 E-value=0.033 Score=47.79 Aligned_cols=37 Identities=19% Similarity=0.091 Sum_probs=24.4
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCc
Q 013176 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPT 109 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~ 109 (448)
.=.++.+|++||||.- ++-.+...... +.+++++-|.
T Consensus 5 ~i~vi~GpMfSGKTte-LLr~i~~y~~a-------g~kv~~~kp~ 41 (211)
T PTZ00293 5 TISVIIGPMFSGKTTE-LMRLVKRFTYS-------EKKCVVIKYS 41 (211)
T ss_pred EEEEEECCCCChHHHH-HHHHHHHHHHc-------CCceEEEEec
Confidence 3357889999999965 33334433332 5668888884
No 272
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.37 E-value=0.011 Score=51.67 Aligned_cols=69 Identities=19% Similarity=0.274 Sum_probs=41.9
Q ss_pred CCHHHHHHHHhcCCeEEec-----------------------CCCCCcccccccCCCCHHHHHHHHHCCCCCCcHHHHhH
Q 013176 1 MTETEVKMYRARREITVEG-----------------------HDVPRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQG 57 (448)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~-----------------------~~~~~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~ 57 (448)
|++++.++|.+..++...- +.+...+.+|+++.||+.+.+.
T Consensus 59 M~~~q~~eF~~~~EcNfai~~~~~gRfRvnAf~qr~~~g~VlRrI~~~IPt~eeL~LPevlk~l---------------- 122 (375)
T COG5008 59 MSAKQREEFEETHECNFAISARDIGRFRVNAFYQRGLAGLVLRRIETKIPTFEELKLPEVLKDL---------------- 122 (375)
T ss_pred hhHHHHHHHHhcccceEEEEcCCCceEEeehhhhcCcchhhhhhhhccCCcHHhcCCcHHHHHh----------------
Confidence 7889999999988887642 2222233455555555444332
Q ss_pred HHHhhcCCcEEEEcCCCChHHHHHHHHHHHH
Q 013176 58 WPMALKGRDLIGIAETGSGKTLSYLLPAFVH 88 (448)
Q Consensus 58 i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~ 88 (448)
++.+..=++++++|||||+.. +.+++.+
T Consensus 123 --a~~kRGLviiVGaTGSGKSTt-mAaMi~y 150 (375)
T COG5008 123 --ALAKRGLVIIVGATGSGKSTT-MAAMIGY 150 (375)
T ss_pred --hcccCceEEEECCCCCCchhh-HHHHhcc
Confidence 112233478889999999976 4444443
No 273
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=96.35 E-value=0.2 Score=47.99 Aligned_cols=71 Identities=18% Similarity=-0.021 Sum_probs=49.7
Q ss_pred CCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhh
Q 013176 47 FVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (448)
Q Consensus 47 ~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~ 124 (448)
+..+-..|.++.-..-.|.- -+.+=.|||||...++-+...-.+ +...++++.+=|+.|+.++.+...+|+
T Consensus 160 IanfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Kaa~lh~k------nPd~~I~~Tfftk~L~s~~r~lv~~F~ 230 (660)
T COG3972 160 IANFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKAAELHSK------NPDSRIAFTFFTKILASTMRTLVPEFF 230 (660)
T ss_pred HhcccchhheeeeecCCchh-hhhcccCCCchhHHHHHHHHHhcC------CCCceEEEEeehHHHHHHHHHHHHHHH
Confidence 33456778877655555544 467789999998655444333222 236689999999999999998888875
No 274
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.35 E-value=0.017 Score=52.65 Aligned_cols=55 Identities=27% Similarity=0.164 Sum_probs=32.4
Q ss_pred HhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013176 60 MALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALK 122 (448)
Q Consensus 60 ~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~ 122 (448)
-+..+.-+++.|++|+|||....-.+...+.. .+..++|+.- ..-..++...+..
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~-------~g~~vl~iS~-E~~~~~~~~r~~~ 80 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDLITQ-------HGVRVGTISL-EEPVVRTARRLLG 80 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHh-------cCceEEEEEc-ccCHHHHHHHHHH
Confidence 44556778899999999997544333333222 1456777754 2334455555543
No 275
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.34 E-value=0.05 Score=43.10 Aligned_cols=15 Identities=27% Similarity=0.310 Sum_probs=12.8
Q ss_pred EEEEcCCCChHHHHH
Q 013176 67 LIGIAETGSGKTLSY 81 (448)
Q Consensus 67 ~lv~~~tGsGKT~~~ 81 (448)
+++.||+|+|||..+
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 578999999999753
No 276
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=96.34 E-value=0.024 Score=58.13 Aligned_cols=84 Identities=18% Similarity=0.270 Sum_probs=68.8
Q ss_pred HHHHHhhhcCCcEEEEecchhHHHHHHHHHHhC----CCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEec-cccCCCC
Q 013176 263 IKLLKEVMDGSRILIFTETKKGCDQVTRQLRMD----GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD-VAARGLD 337 (448)
Q Consensus 263 ~~~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-~~~~Gid 337 (448)
..++.....+.+++|.++|+.-|.+.++.+++. ++++..++|+++..+|..+++...+|+.+|+|+|. .+...++
T Consensus 275 l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~ 354 (630)
T TIGR00643 275 LAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVE 354 (630)
T ss_pred HHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhcccc
Confidence 344444456779999999999999888877653 68899999999999999999999999999999994 4456677
Q ss_pred CCCccEEEE
Q 013176 338 VKDIKCVVN 346 (448)
Q Consensus 338 i~~~~~Vi~ 346 (448)
+.++.+||.
T Consensus 355 ~~~l~lvVI 363 (630)
T TIGR00643 355 FKRLALVII 363 (630)
T ss_pred ccccceEEE
Confidence 888888773
No 277
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.32 E-value=0.053 Score=55.26 Aligned_cols=39 Identities=13% Similarity=0.185 Sum_probs=23.7
Q ss_pred CCccEEEEecccccccCCCHHHHHHHHHHcCCCcceEEEe
Q 013176 173 RRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWS 212 (448)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~S 212 (448)
..++++||||+|.|.... .+.+.++++.-+++..+|+.|
T Consensus 118 gr~KVIIIDEah~LT~~A-~NALLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHA-FNAMLKTLEEPPPHVKFILAT 156 (830)
T ss_pred CCceEEEEeChhhCCHHH-HHHHHHHHHhcCCCeEEEEEE
Confidence 357899999999886543 334444555544444444433
No 278
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.32 E-value=0.19 Score=47.31 Aligned_cols=118 Identities=19% Similarity=0.223 Sum_probs=57.9
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcC-cH--HHHHHHHHHHHHhhcCCCceEEEEEcCCCch
Q 013176 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAP-TR--ELAVQIQEEALKFGSRAGIRSTCIYGGAPKG 141 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P-~~--~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (448)
+.+++++|+|+|||....-.+. .+..+ +.++.++.- +. .-++| ++.+....++.+
T Consensus 207 ~ii~lvGptGvGKTTt~akLA~-~l~~~-------g~~V~lItaDtyR~gAveQ----Lk~yae~lgvpv---------- 264 (407)
T PRK12726 207 RIISLIGQTGVGKTTTLVKLGW-QLLKQ-------NRTVGFITTDTFRSGAVEQ----FQGYADKLDVEL---------- 264 (407)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-HHHHc-------CCeEEEEeCCccCccHHHH----HHHHhhcCCCCE----------
Confidence 4678889999999976543333 23222 334544432 22 12333 333333333322
Q ss_pred HhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCC-CHHHHHHHHHHcCCCcceEEEeccCc
Q 013176 142 PQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMG-FEPQIRKIVTQIRPDRQTLYWSATWP 216 (448)
Q Consensus 142 ~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~-~~~~~~~~~~~~~~~~~~v~~SAT~~ 216 (448)
.+..+|+.+...+.... ...++++|+||=+=+..... ....+..+.....+..-++.+||+..
T Consensus 265 -----------~~~~dp~dL~~al~~l~-~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~ 328 (407)
T PRK12726 265 -----------IVATSPAELEEAVQYMT-YVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMK 328 (407)
T ss_pred -----------EecCCHHHHHHHHHHHH-hcCCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCccc
Confidence 12345666544443221 12457899999987643211 22333334444334333556677654
No 279
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.32 E-value=0.013 Score=56.86 Aligned_cols=36 Identities=17% Similarity=0.077 Sum_probs=22.9
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEc
Q 013176 66 DLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLA 107 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~ 107 (448)
.+++.||+|+|||... .++...+.... .+..++++.
T Consensus 138 ~l~l~G~~G~GKThL~-~ai~~~l~~~~-----~~~~v~yi~ 173 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLL-HAIGNEILENN-----PNAKVVYVS 173 (405)
T ss_pred eEEEECCCCCcHHHHH-HHHHHHHHHhC-----CCCcEEEEE
Confidence 5789999999999864 34444444321 134567764
No 280
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.27 E-value=0.038 Score=52.12 Aligned_cols=39 Identities=15% Similarity=0.264 Sum_probs=23.3
Q ss_pred CCccEEEEecccccccCCCHHHHHHHHHHcCCCcceEEEe
Q 013176 173 RRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWS 212 (448)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~S 212 (448)
....+||+||+|.+.... ...+..++...+....+++.+
T Consensus 124 ~~~~vlilDe~~~l~~~~-~~~L~~~le~~~~~~~~Il~~ 162 (337)
T PRK12402 124 ADYKTILLDNAEALREDA-QQALRRIMEQYSRTCRFIIAT 162 (337)
T ss_pred CCCcEEEEeCcccCCHHH-HHHHHHHHHhccCCCeEEEEe
Confidence 446799999999875432 334455555544555555433
No 281
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.26 E-value=0.065 Score=52.28 Aligned_cols=38 Identities=18% Similarity=0.059 Sum_probs=23.8
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcC
Q 013176 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAP 108 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P 108 (448)
+.+++.||+|+|||..+. ++...+.... .+.+++++..
T Consensus 131 n~l~lyG~~G~GKTHLl~-ai~~~l~~~~-----~~~~v~yi~~ 168 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQ-SIGNYVVQNE-----PDLRVMYITS 168 (440)
T ss_pred CeEEEEcCCCCcHHHHHH-HHHHHHHHhC-----CCCeEEEEEH
Confidence 368999999999998633 3444443321 1346777654
No 282
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.24 E-value=0.042 Score=54.55 Aligned_cols=77 Identities=16% Similarity=0.227 Sum_probs=64.4
Q ss_pred cCCcEEEEecchhHHHHHHHHHHhC-CCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCCCccEEEEcC
Q 013176 271 DGSRILIFTETKKGCDQVTRQLRMD-GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVKDIKCVVNYD 348 (448)
Q Consensus 271 ~~~k~lVf~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~Vi~~~ 348 (448)
.++++||.++++..+.++++.|++. +..+.++|++++..+|........+|+.+|+|+|...-. ..++++..||.-+
T Consensus 24 ~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~~~l~lIIVDE 101 (505)
T TIGR00595 24 LGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPFKNLGLIIVDE 101 (505)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-CcccCCCEEEEEC
Confidence 4778999999999999999999875 678999999999999999999999999999999954322 3466787777555
No 283
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=96.20 E-value=0.0057 Score=50.94 Aligned_cols=124 Identities=22% Similarity=0.199 Sum_probs=51.7
Q ss_pred EEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHHHH
Q 013176 68 IGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDL 147 (448)
Q Consensus 68 lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (448)
++.|+-|-|||.+.-+++.. +... ...+++|.+|+.+-++.+.+.+..-....+++..... .........
T Consensus 1 VltA~RGRGKSa~lGl~~a~-l~~~------~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~---~~~~~~~~~ 70 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAA-LIQK------GKIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKK---RIGQIIKLR 70 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCC-SSS-----------EEEE-SS--S-HHHHHCC---------------------------
T ss_pred CccCCCCCCHHHHHHHHHHH-HHHh------cCceEEEecCCHHHHHHHHHHHHhhcccccccccccc---ccccccccc
Confidence 46899999999754333322 2221 1356999999988877777666554433333320000 000000111
Q ss_pred hcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCCCHHHHHHHHHHcCCCcceEEEeccCc
Q 013176 148 RRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWP 216 (448)
Q Consensus 148 ~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~ 216 (448)
.....|-+..|+.+... ....+++|||||=.+ -.+.+..++ .....+++|.|..
T Consensus 71 ~~~~~i~f~~Pd~l~~~-------~~~~DlliVDEAAaI----p~p~L~~ll----~~~~~vv~stTi~ 124 (177)
T PF05127_consen 71 FNKQRIEFVAPDELLAE-------KPQADLLIVDEAAAI----PLPLLKQLL----RRFPRVVFSTTIH 124 (177)
T ss_dssp --CCC--B--HHHHCCT-----------SCEEECTGGGS-----HHHHHHHH----CCSSEEEEEEEBS
T ss_pred cccceEEEECCHHHHhC-------cCCCCEEEEechhcC----CHHHHHHHH----hhCCEEEEEeecc
Confidence 12456777777666332 223589999999976 344555554 2334567777764
No 284
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.20 E-value=0.26 Score=47.05 Aligned_cols=82 Identities=11% Similarity=0.095 Sum_probs=42.5
Q ss_pred CCccEEEEecccccccC-CCHHHHHHHHHHcC---CCcceEEEeccCch-HHHHHHHHHcCCCeEEEeCCcccccccCcc
Q 013176 173 RRVTYLVLDEADRMLDM-GFEPQIRKIVTQIR---PDRQTLYWSATWPR-EVETLARQFLRNPYKVIIGSLELKANQSIN 247 (448)
Q Consensus 173 ~~~~~iIvDE~h~~~~~-~~~~~~~~~~~~~~---~~~~~v~~SAT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (448)
..+++|+||=+-+.... .....+..++.... +...++.++||... +.......+ .. ...-.
T Consensus 298 ~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f-~~-------------~~~~g 363 (432)
T PRK12724 298 DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAY-ES-------------LNYRR 363 (432)
T ss_pred CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHh-cC-------------CCCCE
Confidence 45789999977654221 12334444444432 23457888999876 344444433 11 11123
Q ss_pred eEEEEecchhHHHHHHHHHHh
Q 013176 248 QVVEVVTEAEKYNRLIKLLKE 268 (448)
Q Consensus 248 ~~~~~~~~~~~~~~l~~~l~~ 268 (448)
.++...++..+.-.++.+...
T Consensus 364 lIlTKLDEt~~~G~il~i~~~ 384 (432)
T PRK12724 364 ILLTKLDEADFLGSFLELADT 384 (432)
T ss_pred EEEEcccCCCCccHHHHHHHH
Confidence 334444555555566665544
No 285
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=96.16 E-value=0.028 Score=54.27 Aligned_cols=134 Identities=13% Similarity=0.205 Sum_probs=75.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHH-HHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHH
Q 013176 67 LIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRE-LAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIR 145 (448)
Q Consensus 67 ~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~-L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (448)
.++.++.|||||.+..+.++..+.... .+.+++++-|+.. |...+...+.......++.........+. ..
T Consensus 4 ~i~~GgrgSGKS~~~~~~~~~~~~~~~-----~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~--~i- 75 (396)
T TIGR01547 4 IIAKGGRRSGKTFAIALKLVEKLAINK-----KQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSM--EI- 75 (396)
T ss_pred EEEeCCCCcccHHHHHHHHHHHHHhcC-----CCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCcc--EE-
Confidence 567899999999998887777766631 2567888888876 66666677766544444432111111100 00
Q ss_pred HHhc-CCcEEEEcc-HHHHHHHHccccCCCCccEEEEecccccccCCCHHHHHHHHHHcCC--CcceEEEeccCch
Q 013176 146 DLRR-GVEIVIATP-GRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRP--DRQTLYWSATWPR 217 (448)
Q Consensus 146 ~~~~-~~~iiv~T~-~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~--~~~~v~~SAT~~~ 217 (448)
.+.. +..|++..- +.... +. ....++++.+||+..+... .+..+...++. ....+++|.+|..
T Consensus 76 ~~~~~g~~i~f~g~~d~~~~-ik----~~~~~~~~~idEa~~~~~~----~~~~l~~rlr~~~~~~~i~~t~NP~~ 142 (396)
T TIGR01547 76 KILNTGKKFIFKGLNDKPNK-LK----SGAGIAIIWFEEASQLTFE----DIKELIPRLRETGGKKFIIFSSNPES 142 (396)
T ss_pred EecCCCeEEEeecccCChhH-hh----CcceeeeehhhhhhhcCHH----HHHHHHHHhhccCCccEEEEEcCcCC
Confidence 0111 344555543 22211 11 1223689999999987443 44444444432 2224788888764
No 286
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.15 E-value=0.055 Score=62.20 Aligned_cols=62 Identities=26% Similarity=0.208 Sum_probs=43.9
Q ss_pred CCcHHHHhHHHHhhcC--CcEEEEcCCCChHHHHHH---HHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHH
Q 013176 49 EPTPIQAQGWPMALKG--RDLIGIAETGSGKTLSYL---LPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQ 117 (448)
Q Consensus 49 ~~~~~Q~~~i~~~~~~--~~~lv~~~tGsGKT~~~~---l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~ 117 (448)
.+++.|++|+..++.+ +-++|.++.|+|||.... -++...+.. .+..++.++||-.-+.++.
T Consensus 1019 ~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~-------~g~~v~glApT~~Aa~~L~ 1085 (1960)
T TIGR02760 1019 RLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFES-------EQLQVIGLAPTHEAVGELK 1085 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHh-------cCCeEEEEeChHHHHHHHH
Confidence 6899999999998865 345777999999997541 122233332 2567999999876665543
No 287
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=96.13 E-value=0.023 Score=52.05 Aligned_cols=50 Identities=18% Similarity=0.103 Sum_probs=28.5
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013176 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALK 122 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~ 122 (448)
.++++++|+|+|||..+-+.+-.. .. ..-+.+=+..|.+-+.+....+++
T Consensus 163 pSmIlWGppG~GKTtlArlia~ts-k~-------~SyrfvelSAt~a~t~dvR~ife~ 212 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIASTS-KK-------HSYRFVELSATNAKTNDVRDIFEQ 212 (554)
T ss_pred CceEEecCCCCchHHHHHHHHhhc-CC-------CceEEEEEeccccchHHHHHHHHH
Confidence 378999999999997543322211 00 123355555665555555555444
No 288
>PRK05580 primosome assembly protein PriA; Validated
Probab=96.09 E-value=0.052 Score=56.06 Aligned_cols=78 Identities=17% Similarity=0.224 Sum_probs=65.5
Q ss_pred cCCcEEEEecchhHHHHHHHHHHhC-CCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCCCccEEEEcCC
Q 013176 271 DGSRILIFTETKKGCDQVTRQLRMD-GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVKDIKCVVNYDF 349 (448)
Q Consensus 271 ~~~k~lVf~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~Vi~~~~ 349 (448)
.+.++||.+++++.+.++.+.|++. +..+..+|++++..+|...+....+|+.+|+|+|..... +.+.++..||.-+.
T Consensus 189 ~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-~p~~~l~liVvDEe 267 (679)
T PRK05580 189 QGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-LPFKNLGLIIVDEE 267 (679)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-ccccCCCEEEEECC
Confidence 4678999999999999999999875 778999999999999999999999999999999964322 45667888776653
No 289
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.08 E-value=0.086 Score=46.55 Aligned_cols=53 Identities=11% Similarity=0.144 Sum_probs=32.1
Q ss_pred hcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013176 62 LKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (448)
Q Consensus 62 ~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~ 123 (448)
-.+.-+++.+++|+|||..++-.+. ...++ +.++++++. .+-..+..+.+.++
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~-~~~~~-------g~~~~yi~~-e~~~~~~~~~~~~~ 74 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAY-GFLQN-------GYSVSYVST-QLTTTEFIKQMMSL 74 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH-HHHhC-------CCcEEEEeC-CCCHHHHHHHHHHh
Confidence 3456788899999999976433333 33221 456788874 33345555555554
No 290
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.08 E-value=0.15 Score=49.04 Aligned_cols=53 Identities=15% Similarity=0.305 Sum_probs=30.7
Q ss_pred CccEEEEecccccccCC-CHHHHHHHHHHcCCCcceEEEeccCchHHHHHHHHH
Q 013176 174 RVTYLVLDEADRMLDMG-FEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQF 226 (448)
Q Consensus 174 ~~~~iIvDE~h~~~~~~-~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~ 226 (448)
.+++||||=+-+..... .-..+..+.....+..-++.++||...+....+..+
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F 235 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAF 235 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHH
Confidence 46788888886543321 223444444455556667778888765544444444
No 291
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=96.07 E-value=0.04 Score=53.84 Aligned_cols=60 Identities=27% Similarity=0.241 Sum_probs=44.1
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhc
Q 013176 64 GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGS 125 (448)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~ 125 (448)
+.-++|++..|||||.+++--+...+...+.... +..|+|+.|++.+.+-+.+.+-+++.
T Consensus 226 ~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~--~k~vlvl~PN~vFleYis~VLPeLGe 285 (747)
T COG3973 226 NKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQ--AKPVLVLGPNRVFLEYISRVLPELGE 285 (747)
T ss_pred CCeEEEecCCCCCchhHHHHHHHHHHhccccccc--cCceEEEcCcHHHHHHHHHhchhhcc
Confidence 3457788999999999877555555544433222 34499999999999988888888754
No 292
>PF13173 AAA_14: AAA domain
Probab=96.07 E-value=0.067 Score=42.38 Aligned_cols=38 Identities=18% Similarity=0.358 Sum_probs=24.3
Q ss_pred CccEEEEecccccccCCCHHHHHHHHHHcCCCcceEEEeccC
Q 013176 174 RVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATW 215 (448)
Q Consensus 174 ~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~ 215 (448)
.-.+|++||+|.+.+ +...++.+.... ++.++ .+|++.
T Consensus 61 ~~~~i~iDEiq~~~~--~~~~lk~l~d~~-~~~~i-i~tgS~ 98 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPD--WEDALKFLVDNG-PNIKI-ILTGSS 98 (128)
T ss_pred CCcEEEEehhhhhcc--HHHHHHHHHHhc-cCceE-EEEccc
Confidence 456899999999865 455666666543 34454 455553
No 293
>PLN03025 replication factor C subunit; Provisional
Probab=96.01 E-value=0.1 Score=48.75 Aligned_cols=39 Identities=21% Similarity=0.298 Sum_probs=23.8
Q ss_pred CccEEEEecccccccCCCHHHHHHHHHHcCCCcceEEEecc
Q 013176 174 RVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSAT 214 (448)
Q Consensus 174 ~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT 214 (448)
..+++|+||+|.+.... ...+..++...++...++ ++++
T Consensus 99 ~~kviiiDE~d~lt~~a-q~aL~~~lE~~~~~t~~i-l~~n 137 (319)
T PLN03025 99 RHKIVILDEADSMTSGA-QQALRRTMEIYSNTTRFA-LACN 137 (319)
T ss_pred CeEEEEEechhhcCHHH-HHHHHHHHhcccCCceEE-EEeC
Confidence 47899999999986533 344555555444445444 4444
No 294
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.00 E-value=0.026 Score=52.15 Aligned_cols=63 Identities=22% Similarity=0.186 Sum_probs=41.3
Q ss_pred HHHCCCCCCcHHHHhHHHHhhc-CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHH
Q 013176 42 IAKLGFVEPTPIQAQGWPMALK-GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTREL 112 (448)
Q Consensus 42 ~~~~~~~~~~~~Q~~~i~~~~~-~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L 112 (448)
+...|+ +++.|.+.+..+.. +.+++++|+||||||.. +-+++..+.... ...+++.+-.+.+|
T Consensus 123 lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTl-l~aL~~~i~~~~-----~~~rivtiEd~~El 186 (323)
T PRK13833 123 YVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTTL-ANAVIAEIVASA-----PEDRLVILEDTAEI 186 (323)
T ss_pred HHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHHhcCC-----CCceEEEecCCccc
Confidence 334444 56788877766554 56899999999999964 455555543221 14467777766666
No 295
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.99 E-value=0.037 Score=49.99 Aligned_cols=123 Identities=15% Similarity=0.173 Sum_probs=60.0
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHH-HhhcCCCceEEEEEcCCCchHh
Q 013176 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEAL-KFGSRAGIRSTCIYGGAPKGPQ 143 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 143 (448)
.+++++|+|+-|||.+.--..-.+-.. ........+.+++-+|...-...++..+- .++....- ..+....
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~-~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~-------~~~~~~~ 133 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQ-SDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRP-------RDRVAKL 133 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCC-CCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCC-------CCCHHHH
Confidence 489999999999998532111111111 11111123566777777666555555543 33222110 0000000
Q ss_pred HHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCCCH--HHHHHHHHHcCCCcce-EEEecc
Q 013176 144 IRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFE--PQIRKIVTQIRPDRQT-LYWSAT 214 (448)
Q Consensus 144 ~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~--~~~~~~~~~~~~~~~~-v~~SAT 214 (448)
.. +...++. .-.+.++||||+|.++..... ..+.+.++.+.+..++ +..-+|
T Consensus 134 ~~--------------~~~~llr-----~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt 188 (302)
T PF05621_consen 134 EQ--------------QVLRLLR-----RLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGT 188 (302)
T ss_pred HH--------------HHHHHHH-----HcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEecc
Confidence 00 0112222 224679999999998876532 3344455555544432 223355
No 296
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=95.98 E-value=0.039 Score=58.59 Aligned_cols=81 Identities=19% Similarity=0.294 Sum_probs=67.0
Q ss_pred HHHhhhcCCcEEEEecchhHHHHHHHHHHhC----CCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEec-cccCCCCCC
Q 013176 265 LLKEVMDGSRILIFTETKKGCDQVTRQLRMD----GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD-VAARGLDVK 339 (448)
Q Consensus 265 ~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-~~~~Gidi~ 339 (448)
.+.....+.+++|.++|..-|.+.++.+++. ++++..+++..+..++..+++.+++|+.+|+|+|. .+...+.+.
T Consensus 493 ~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~ 572 (926)
T TIGR00580 493 AFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFK 572 (926)
T ss_pred HHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcc
Confidence 3344445789999999999999999888764 56788899999999999999999999999999994 555677888
Q ss_pred CccEEE
Q 013176 340 DIKCVV 345 (448)
Q Consensus 340 ~~~~Vi 345 (448)
++.++|
T Consensus 573 ~L~llV 578 (926)
T TIGR00580 573 DLGLLI 578 (926)
T ss_pred cCCEEE
Confidence 888877
No 297
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=95.97 E-value=0.082 Score=53.86 Aligned_cols=149 Identities=19% Similarity=0.165 Sum_probs=84.1
Q ss_pred HHHCCCCCCcHHHHhHHHHhhcCC--cEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHH
Q 013176 42 IAKLGFVEPTPIQAQGWPMALKGR--DLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEE 119 (448)
Q Consensus 42 ~~~~~~~~~~~~Q~~~i~~~~~~~--~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~ 119 (448)
+.....++...-|.+.+..+++.+ -+++.|+=|=|||.+.=+++....... . ..+++|.+|+.+-++.+.+.
T Consensus 207 l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~-~-----~~~iiVTAP~~~nv~~Lf~f 280 (758)
T COG1444 207 LYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLA-G-----SVRIIVTAPTPANVQTLFEF 280 (758)
T ss_pred HhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhc-C-----CceEEEeCCCHHHHHHHHHH
Confidence 444334445555555666666654 467779999999977665553322221 0 34799999999999888888
Q ss_pred HHHhhcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCCCHHHHHHHH
Q 013176 120 ALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIV 199 (448)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~ 199 (448)
+.+-....+.+........ ............|=+.+|+... ..-+++|||||=.+ -.+.+..++
T Consensus 281 a~~~l~~lg~~~~v~~d~~--g~~~~~~~~~~~i~y~~P~~a~----------~~~DllvVDEAAaI----plplL~~l~ 344 (758)
T COG1444 281 AGKGLEFLGYKRKVAPDAL--GEIREVSGDGFRIEYVPPDDAQ----------EEADLLVVDEAAAI----PLPLLHKLL 344 (758)
T ss_pred HHHhHHHhCCccccccccc--cceeeecCCceeEEeeCcchhc----------ccCCEEEEehhhcC----ChHHHHHHH
Confidence 7665555543321111100 0000000011223344443321 11679999999876 355666666
Q ss_pred HHcCCCcceEEEeccCc
Q 013176 200 TQIRPDRQTLYWSATWP 216 (448)
Q Consensus 200 ~~~~~~~~~v~~SAT~~ 216 (448)
... +.++||.|+.
T Consensus 345 ~~~----~rv~~sTTIh 357 (758)
T COG1444 345 RRF----PRVLFSTTIH 357 (758)
T ss_pred hhc----CceEEEeeec
Confidence 543 4578888874
No 298
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.97 E-value=0.042 Score=53.80 Aligned_cols=21 Identities=19% Similarity=0.349 Sum_probs=16.6
Q ss_pred CcEEEEcCCCChHHHHHHHHH
Q 013176 65 RDLIGIAETGSGKTLSYLLPA 85 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~l~~ 85 (448)
+..++.||.|+|||.++.+.+
T Consensus 36 ha~Lf~Gp~G~GKTT~ArilA 56 (491)
T PRK14964 36 QSILLVGASGVGKTTCARIIS 56 (491)
T ss_pred ceEEEECCCCccHHHHHHHHH
Confidence 368999999999998765433
No 299
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=95.97 E-value=0.042 Score=51.28 Aligned_cols=39 Identities=13% Similarity=0.159 Sum_probs=24.3
Q ss_pred CccEEEEecccccccCCCHHHHHHHHHHcCCCcceEEEe
Q 013176 174 RVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWS 212 (448)
Q Consensus 174 ~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~S 212 (448)
..+++|+||+|.+........+..++...+...++++.|
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~ 138 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITA 138 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEc
Confidence 457999999998733223445555566655556555433
No 300
>PRK05973 replicative DNA helicase; Provisional
Probab=95.91 E-value=0.071 Score=46.93 Aligned_cols=65 Identities=18% Similarity=0.161 Sum_probs=40.1
Q ss_pred CCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013176 49 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (448)
Q Consensus 49 ~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~ 123 (448)
.++| ..+....+..+.-++|.|++|+|||...+-.+.+.+.. +.+++|++- .+-..|+.+.+..+
T Consensus 50 ~~~p-~~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~--------Ge~vlyfSl-Ees~~~i~~R~~s~ 114 (237)
T PRK05973 50 ATTP-AEELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKS--------GRTGVFFTL-EYTEQDVRDRLRAL 114 (237)
T ss_pred CCCC-HHHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhc--------CCeEEEEEE-eCCHHHHHHHHHHc
Confidence 3455 22344455566778889999999997654434333322 456777754 33356777777765
No 301
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.90 E-value=0.24 Score=47.56 Aligned_cols=159 Identities=18% Similarity=0.159 Sum_probs=74.2
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHh
Q 013176 64 GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQ 143 (448)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (448)
+..+.++||||+|||......+...+.... .....++...+.-.. ..+++..++...++.+.
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~-----~~~v~~i~~d~~rig--alEQL~~~a~ilGvp~~----------- 252 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHG-----ADKVALLTTDSYRIG--GHEQLRIYGKLLGVSVR----------- 252 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcC-----CCeEEEEecCCcchh--HHHHHHHHHHHcCCcee-----------
Confidence 345788899999999865433222222210 012234444442221 12334444333344332
Q ss_pred HHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCC-CHHHHHHHHHHcCCCcceEEEeccCchH-HHH
Q 013176 144 IRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMG-FEPQIRKIVTQIRPDRQTLYWSATWPRE-VET 221 (448)
Q Consensus 144 ~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~-~~~~~~~~~~~~~~~~~~v~~SAT~~~~-~~~ 221 (448)
.+.++..+...+. .+.+.+++++|.+=+..... ....+..+.....+...++.++||.... ...
T Consensus 253 ----------~v~~~~dl~~al~----~l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~ 318 (420)
T PRK14721 253 ----------SIKDIADLQLMLH----ELRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDE 318 (420)
T ss_pred ----------cCCCHHHHHHHHH----HhcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHH
Confidence 1222323322222 24567889999864321110 1122223222222445678899997544 333
Q ss_pred HHHHHcCCCeEEEeCCcccccccCcceEEEEecchhHHHHHHHHHHh
Q 013176 222 LARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKE 268 (448)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 268 (448)
....+-. ...-..++...++..+.-.++.++..
T Consensus 319 ~~~~f~~--------------~~~~~~I~TKlDEt~~~G~~l~~~~~ 351 (420)
T PRK14721 319 VISAYQG--------------HGIHGCIITKVDEAASLGIALDAVIR 351 (420)
T ss_pred HHHHhcC--------------CCCCEEEEEeeeCCCCccHHHHHHHH
Confidence 3433311 11223445555666666667776655
No 302
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=95.88 E-value=0.095 Score=53.14 Aligned_cols=38 Identities=13% Similarity=0.087 Sum_probs=22.4
Q ss_pred CCccEEEEecccccccCCCHHHHHHHHHHcCCCcceEEE
Q 013176 173 RRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYW 211 (448)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~ 211 (448)
..+.++||||+|+|.... .+.+.+++..-+....+|+.
T Consensus 118 g~~KV~IIDEah~Ls~~a-~NALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHS-FNALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred CCCEEEEEechHhCCHHH-HHHHHHHHHcCCCCeEEEEe
Confidence 357899999999986543 33344444443333444443
No 303
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=95.87 E-value=0.047 Score=55.80 Aligned_cols=93 Identities=19% Similarity=0.276 Sum_probs=73.8
Q ss_pred ecchhHHHHHHHHHHhhhc-CCcEEEEecchhHHHHHHHHHHhC-CCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEec
Q 013176 253 VTEAEKYNRLIKLLKEVMD-GSRILIFTETKKGCDQVTRQLRMD-GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD 330 (448)
Q Consensus 253 ~~~~~~~~~l~~~l~~~~~-~~k~lVf~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~ 330 (448)
..-+.|-+..++.+.+... |+.+||.++.+.....+.+.|+.. +.++.++|+++++.+|.....+..+|+.+|+|.|.
T Consensus 225 vTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtR 304 (730)
T COG1198 225 VTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTR 304 (730)
T ss_pred CCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEec
Confidence 3445566666666665554 779999999999999999999876 88999999999999999999999999999999995
Q ss_pred cccCCCCCCCccEEEE
Q 013176 331 VAARGLDVKDIKCVVN 346 (448)
Q Consensus 331 ~~~~Gidi~~~~~Vi~ 346 (448)
.+- =.=++++..||.
T Consensus 305 SAl-F~Pf~~LGLIIv 319 (730)
T COG1198 305 SAL-FLPFKNLGLIIV 319 (730)
T ss_pred hhh-cCchhhccEEEE
Confidence 532 133456666663
No 304
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.87 E-value=0.018 Score=48.52 Aligned_cols=46 Identities=24% Similarity=0.283 Sum_probs=27.1
Q ss_pred hcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHH
Q 013176 62 LKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQI 116 (448)
Q Consensus 62 ~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~ 116 (448)
..++++++.|++|+|||..+.. +...+... +..++++ +..+|..++
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~a-i~~~~~~~-------g~~v~f~-~~~~L~~~l 90 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVA-IANEAIRK-------GYSVLFI-TASDLLDEL 90 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHH-HHHHHHHT-------T--EEEE-EHHHHHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHH-HHHHhccC-------CcceeEe-ecCceeccc
Confidence 3457899999999999987544 33344432 4456665 545565543
No 305
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=95.87 E-value=0.055 Score=51.33 Aligned_cols=50 Identities=24% Similarity=0.468 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHH--------hHHHHhhcCCcEEEEcCCCChHHHHHHH
Q 013176 33 NFPDYCLEVIAKLGFVEPTPIQA--------QGWPMALKGRDLIGIAETGSGKTLSYLL 83 (448)
Q Consensus 33 ~l~~~l~~~~~~~~~~~~~~~Q~--------~~i~~~~~~~~~lv~~~tGsGKT~~~~l 83 (448)
...+++-=.+.+.|| +|..+.. .+++.+..+.|++..+|+|+|||..|.-
T Consensus 171 T~dEWid~LlrSiG~-~P~~~~~r~k~~~L~rl~~fve~~~Nli~lGp~GTGKThla~~ 228 (449)
T TIGR02688 171 TLEEWIDVLIRSIGY-EPEGFEARQKLLLLARLLPLVEPNYNLIELGPKGTGKSYIYNN 228 (449)
T ss_pred CHHHHHHHHHHhcCC-CcccCChHHHHHHHHhhHHHHhcCCcEEEECCCCCCHHHHHHH
Confidence 333555555777888 4432211 2224455678999999999999977653
No 306
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=95.87 E-value=0.084 Score=50.09 Aligned_cols=47 Identities=13% Similarity=0.208 Sum_probs=29.6
Q ss_pred CccEEEEecccccccCC-CHHHHHHHHHHcC-CCcceEEEeccCchHHH
Q 013176 174 RVTYLVLDEADRMLDMG-FEPQIRKIVTQIR-PDRQTLYWSATWPREVE 220 (448)
Q Consensus 174 ~~~~iIvDE~h~~~~~~-~~~~~~~~~~~~~-~~~~~v~~SAT~~~~~~ 220 (448)
++++++||.+|.+.... ....+-.+...+. .+.|+++.|..+|..+.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~ 223 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELN 223 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhc
Confidence 57899999999877653 3344445555444 34466666666665543
No 307
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.82 E-value=0.1 Score=47.13 Aligned_cols=19 Identities=26% Similarity=0.277 Sum_probs=15.6
Q ss_pred CcEEEEcCCCChHHHHHHH
Q 013176 65 RDLIGIAETGSGKTLSYLL 83 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~l 83 (448)
.++++.||+|+|||..+-.
T Consensus 43 ~~vll~GppGtGKTtlA~~ 61 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARI 61 (261)
T ss_pred ceEEEEcCCCCCHHHHHHH
Confidence 4789999999999986543
No 308
>PRK04195 replication factor C large subunit; Provisional
Probab=95.81 E-value=0.092 Score=52.07 Aligned_cols=18 Identities=28% Similarity=0.272 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCChHHHHH
Q 013176 64 GRDLIGIAETGSGKTLSY 81 (448)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~ 81 (448)
.+.+++.||+|+|||..+
T Consensus 39 ~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLA 56 (482)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 357899999999999753
No 309
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=95.80 E-value=0.077 Score=54.82 Aligned_cols=39 Identities=21% Similarity=0.225 Sum_probs=23.6
Q ss_pred CccEEEEecccccccCCCHHHHHHHHHHcCCCcceEEEeccCch
Q 013176 174 RVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPR 217 (448)
Q Consensus 174 ~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~ 217 (448)
...++|+||+|.+.. .....++..+ ...+++++++|-.+
T Consensus 109 ~~~IL~IDEIh~Ln~----~qQdaLL~~l-E~g~IiLI~aTTen 147 (725)
T PRK13341 109 KRTILFIDEVHRFNK----AQQDALLPWV-ENGTITLIGATTEN 147 (725)
T ss_pred CceEEEEeChhhCCH----HHHHHHHHHh-cCceEEEEEecCCC
Confidence 356899999998743 2233334333 34567777777543
No 310
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=95.79 E-value=0.032 Score=46.25 Aligned_cols=42 Identities=12% Similarity=0.225 Sum_probs=28.8
Q ss_pred CCccEEEEecccccccCCCHHHHHHHHHHcCCCcceEEEeccC
Q 013176 173 RRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATW 215 (448)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~ 215 (448)
....++|+||+|.|.... ...+.++++.-+.+..++++|..+
T Consensus 101 ~~~KviiI~~ad~l~~~a-~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEEA-QNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp SSSEEEEEETGGGS-HHH-HHHHHHHHHSTTTTEEEEEEES-G
T ss_pred CCceEEEeehHhhhhHHH-HHHHHHHhcCCCCCEEEEEEECCh
Confidence 457899999999986543 556666777666666666666554
No 311
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.78 E-value=0.12 Score=49.88 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=18.2
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhh
Q 013176 65 RDLIGIAETGSGKTLSYLLPAFVHVS 90 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~l~~l~~~~ 90 (448)
.++++.||+|+|||.. +-.++..+.
T Consensus 56 ~~~lI~G~~GtGKT~l-~~~v~~~l~ 80 (394)
T PRK00411 56 LNVLIYGPPGTGKTTT-VKKVFEELE 80 (394)
T ss_pred CeEEEECCCCCCHHHH-HHHHHHHHH
Confidence 5799999999999976 444444443
No 312
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.75 E-value=0.085 Score=53.12 Aligned_cols=40 Identities=15% Similarity=0.193 Sum_probs=23.7
Q ss_pred CCccEEEEecccccccCCCHHHHHHHHHHcCCCcceEEEecc
Q 013176 173 RRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSAT 214 (448)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT 214 (448)
...+++||||+|++.... ...+.+++...+....+|+ ++|
T Consensus 117 gk~KV~IIDEVh~LS~~A-~NALLKtLEEPP~~v~FIL-aTt 156 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHS-FNALLKTLEEPPEHVKFLF-ATT 156 (702)
T ss_pred CCcEEEEEechHhcCHHH-HHHHHHHHhcCCCCcEEEE-EEC
Confidence 346799999999886543 3344445554444444444 334
No 313
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.70 E-value=0.15 Score=44.96 Aligned_cols=52 Identities=27% Similarity=0.330 Sum_probs=30.6
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013176 63 KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (448)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~ 123 (448)
.+..+++.+++|+|||..+.-.+...+.. +..++++.. ....+++.+..+.+
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~--------g~~~~~is~-e~~~~~i~~~~~~~ 70 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRD--------GDPVIYVTT-EESRESIIRQAAQF 70 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhc--------CCeEEEEEc-cCCHHHHHHHHHHh
Confidence 45678889999999997544333333322 345666654 33445555554444
No 314
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=95.70 E-value=0.01 Score=59.28 Aligned_cols=156 Identities=15% Similarity=0.161 Sum_probs=91.3
Q ss_pred CCCcHHHHhHHHHhhcC----------CcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHH
Q 013176 48 VEPTPIQAQGWPMALKG----------RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQ 117 (448)
Q Consensus 48 ~~~~~~Q~~~i~~~~~~----------~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~ 117 (448)
..+...|.+++-...+. -.+||-...|.||-.+..-.++....+ ..+++|++.-+..|--+..
T Consensus 263 g~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLk-------GRKrAlW~SVSsDLKfDAE 335 (1300)
T KOG1513|consen 263 GHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLK-------GRKRALWFSVSSDLKFDAE 335 (1300)
T ss_pred cchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhc-------ccceeEEEEeccccccchh
Confidence 35788899988766542 146666555555543322223333333 2567999999999988877
Q ss_pred HHHHHhhcCCCceEEEEEc----CCCchHhHHHHhcCCcEEEEccHHHHHHHHcccc------------CCCCc-cEEEE
Q 013176 118 EEALKFGSRAGIRSTCIYG----GAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHT------------NLRRV-TYLVL 180 (448)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~------------~~~~~-~~iIv 180 (448)
+.++..+.. ++.|..+.- ..+.++. .. -.-.|+++|+..|..--..... .-.+| ++|||
T Consensus 336 RDL~DigA~-~I~V~alnK~KYakIss~en-~n--~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvf 411 (1300)
T KOG1513|consen 336 RDLRDIGAT-GIAVHALNKFKYAKISSKEN-TN--TKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVF 411 (1300)
T ss_pred hchhhcCCC-Cccceehhhccccccccccc-CC--ccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEe
Confidence 888876554 455544321 1111000 01 1236999999877432221000 00112 58999
Q ss_pred ecccccccC---------CCHHHHHHHHHHcCCCcceEEEeccC
Q 013176 181 DEADRMLDM---------GFEPQIRKIVTQIRPDRQTLYWSATW 215 (448)
Q Consensus 181 DE~h~~~~~---------~~~~~~~~~~~~~~~~~~~v~~SAT~ 215 (448)
||||.-.+. ..+..+..+...+ ++.++++-|||-
T Consensus 412 DECHkAKNL~p~~~~k~TKtG~tVLdLQk~L-P~ARVVYASATG 454 (1300)
T KOG1513|consen 412 DECHKAKNLVPTAGAKSTKTGKTVLDLQKKL-PNARVVYASATG 454 (1300)
T ss_pred hhhhhhcccccccCCCcCcccHhHHHHHHhC-CCceEEEeeccC
Confidence 999975431 1456666776666 678899999994
No 315
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.69 E-value=0.11 Score=52.17 Aligned_cols=40 Identities=13% Similarity=0.205 Sum_probs=23.4
Q ss_pred CCccEEEEecccccccCCCHHHHHHHHHHcCCCcceEEEec
Q 013176 173 RRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSA 213 (448)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~SA 213 (448)
..++++||||+|+|....+ +.+.++++.-+.+..+|+.|-
T Consensus 123 gr~KViIIDEah~Ls~~Aa-NALLKTLEEPP~~v~FILaTt 162 (700)
T PRK12323 123 GRFKVYMIDEVHMLTNHAF-NAMLKTLEEPPEHVKFILATT 162 (700)
T ss_pred CCceEEEEEChHhcCHHHH-HHHHHhhccCCCCceEEEEeC
Confidence 4578999999999865432 333344444334444444443
No 316
>PRK13342 recombination factor protein RarA; Reviewed
Probab=95.67 E-value=0.099 Score=50.72 Aligned_cols=18 Identities=28% Similarity=0.254 Sum_probs=14.9
Q ss_pred CcEEEEcCCCChHHHHHH
Q 013176 65 RDLIGIAETGSGKTLSYL 82 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~ 82 (448)
.++++.||+|+|||..+.
T Consensus 37 ~~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 37 SSMILWGPPGTGKTTLAR 54 (413)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 378999999999997643
No 317
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=95.66 E-value=0.082 Score=49.39 Aligned_cols=36 Identities=22% Similarity=0.133 Sum_probs=26.2
Q ss_pred CcHHHHhHHHHhhcC-----CcEEEEcCCCChHHHHHHHHH
Q 013176 50 PTPIQAQGWPMALKG-----RDLIGIAETGSGKTLSYLLPA 85 (448)
Q Consensus 50 ~~~~Q~~~i~~~~~~-----~~~lv~~~tGsGKT~~~~l~~ 85 (448)
++|||...+..+..- ...++.||.|.||+..+...+
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A 42 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLA 42 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHH
Confidence 368888888776642 357889999999997654433
No 318
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=95.65 E-value=0.13 Score=54.03 Aligned_cols=39 Identities=21% Similarity=0.278 Sum_probs=25.5
Q ss_pred CCccEEEEecccccccCCCHHHHHHHHHHcCCCcceEEEe
Q 013176 173 RRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWS 212 (448)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~S 212 (448)
..++++||||+|+|.... .+.+.++++..+....+|+.|
T Consensus 119 ~~~KV~IIDEad~lt~~a-~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQG-FNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred CCceEEEEechhhcCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 457899999999986543 344555555555555555544
No 319
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=95.64 E-value=0.078 Score=52.87 Aligned_cols=89 Identities=17% Similarity=0.227 Sum_probs=73.1
Q ss_pred HHHHHHHHHHhhhcCCcEEEEecchhHHHHHHHH----HHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEecc-c
Q 013176 258 KYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQ----LRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDV-A 332 (448)
Q Consensus 258 ~~~~l~~~l~~~~~~~k~lVf~~~~~~~~~l~~~----L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~-~ 332 (448)
..-.++.++.....|.++...++|.--|++-++. |...++.+.++.|.+....|.++++...+|+++++|.|.+ +
T Consensus 297 TvVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALi 376 (677)
T COG1200 297 TVVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALI 376 (677)
T ss_pred HHHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhh
Confidence 3445566666777788999999997766655554 5556899999999999999999999999999999999955 4
Q ss_pred cCCCCCCCccEEEE
Q 013176 333 ARGLDVKDIKCVVN 346 (448)
Q Consensus 333 ~~Gidi~~~~~Vi~ 346 (448)
...+++.++..||.
T Consensus 377 Qd~V~F~~LgLVIi 390 (677)
T COG1200 377 QDKVEFHNLGLVII 390 (677)
T ss_pred hcceeecceeEEEE
Confidence 78999999888873
No 320
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.64 E-value=0.16 Score=45.98 Aligned_cols=54 Identities=26% Similarity=0.383 Sum_probs=32.6
Q ss_pred CCccEEEEecccccccCC-CHHHHHHHHHHcC------CCcceEEEeccCchHHHHHHHHH
Q 013176 173 RRVTYLVLDEADRMLDMG-FEPQIRKIVTQIR------PDRQTLYWSATWPREVETLARQF 226 (448)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~-~~~~~~~~~~~~~------~~~~~v~~SAT~~~~~~~~~~~~ 226 (448)
.++++|++|=+-+..... ....+..+.+... +...++.++||...+....+..+
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f 213 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVF 213 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHH
Confidence 457899999988754321 2234555554444 55667888998765544444433
No 321
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.63 E-value=0.061 Score=52.21 Aligned_cols=17 Identities=29% Similarity=0.253 Sum_probs=14.4
Q ss_pred EEEEcCCCChHHHHHHH
Q 013176 67 LIGIAETGSGKTLSYLL 83 (448)
Q Consensus 67 ~lv~~~tGsGKT~~~~l 83 (448)
.+++||.|+|||.++.+
T Consensus 43 ~Lf~GP~GtGKTTlAri 59 (484)
T PRK14956 43 YIFFGPRGVGKTTIARI 59 (484)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68999999999987544
No 322
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.61 E-value=0.034 Score=51.52 Aligned_cols=66 Identities=26% Similarity=0.282 Sum_probs=42.3
Q ss_pred HHHHHHCCCCCCcHHHHhHHHHh-hcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHH
Q 013176 39 LEVIAKLGFVEPTPIQAQGWPMA-LKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTREL 112 (448)
Q Consensus 39 ~~~~~~~~~~~~~~~Q~~~i~~~-~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L 112 (448)
.+.+...|+ +.+.|.+.+..+ ..+.++++.++||||||.. +-+++..+... +...+++++-.+.+|
T Consensus 124 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~aL~~~~~~~-----~~~~rivtIEd~~El 190 (319)
T PRK13894 124 LDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTTL-VNAIINEMVIQ-----DPTERVFIIEDTGEI 190 (319)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHhhhhc-----CCCceEEEEcCCCcc
Confidence 344445555 567888888754 4567899999999999953 44455443211 124467777776665
No 323
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=95.60 E-value=0.067 Score=56.61 Aligned_cols=81 Identities=17% Similarity=0.270 Sum_probs=69.8
Q ss_pred HHHhhhcCCcEEEEecchhHHHHHHHHHHhC----CCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEe-ccccCCCCCC
Q 013176 265 LLKEVMDGSRILIFTETKKGCDQVTRQLRMD----GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTAT-DVAARGLDVK 339 (448)
Q Consensus 265 ~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T-~~~~~Gidi~ 339 (448)
..+....+++|.|+++|.--|++-++.++++ .+++..++.-.+.++..++++..++|+++|+|.| ..+..+|-+.
T Consensus 636 AFkAV~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~Fk 715 (1139)
T COG1197 636 AFKAVMDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFK 715 (1139)
T ss_pred HHHHhcCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEEe
Confidence 3444556889999999998888888888765 5668888888999999999999999999999999 7778899999
Q ss_pred CccEEE
Q 013176 340 DIKCVV 345 (448)
Q Consensus 340 ~~~~Vi 345 (448)
++-.+|
T Consensus 716 dLGLlI 721 (1139)
T COG1197 716 DLGLLI 721 (1139)
T ss_pred cCCeEE
Confidence 998877
No 324
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.57 E-value=0.15 Score=50.66 Aligned_cols=39 Identities=10% Similarity=0.099 Sum_probs=24.6
Q ss_pred CCccEEEEecccccccCCCHHHHHHHHHHcCCCcceEEEe
Q 013176 173 RRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWS 212 (448)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~S 212 (448)
.+++++||||+|.+.... .+.+.+++...++...+|+.|
T Consensus 118 ~~~kV~iIDE~~~ls~~a-~naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHS-FNALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHH-HHHHHHHHhccCCCeEEEEEE
Confidence 357899999999886543 334445555544555555544
No 325
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.56 E-value=0.061 Score=49.47 Aligned_cols=65 Identities=23% Similarity=0.295 Sum_probs=40.9
Q ss_pred HHHHHCCCCCCcHHHHhHHHHhh-cCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHH
Q 013176 40 EVIAKLGFVEPTPIQAQGWPMAL-KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTREL 112 (448)
Q Consensus 40 ~~~~~~~~~~~~~~Q~~~i~~~~-~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L 112 (448)
+.+...|. +.+.|.+.+..+. .+.+++++++||||||.. +-+++..+.... ...+++++-.+.++
T Consensus 109 ~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~al~~~i~~~~-----~~~ri~tiEd~~El 174 (299)
T TIGR02782 109 DDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTTL-ANALLAEIAKND-----PTDRVVIIEDTREL 174 (299)
T ss_pred HHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHhhccC-----CCceEEEECCchhh
Confidence 33444444 4566666665544 456899999999999964 444555443321 14568888777776
No 326
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.52 E-value=0.085 Score=46.88 Aligned_cols=52 Identities=19% Similarity=0.236 Sum_probs=35.4
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhh
Q 013176 64 GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (448)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~ 124 (448)
+..+++.+++|+|||..++-.+...+.. +.+++|++- .+-..|+.+.+..++
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~~--------ge~~lyvs~-ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQM--------GEPGIYVAL-EEHPVQVRRNMAQFG 72 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHc--------CCcEEEEEe-eCCHHHHHHHHHHhC
Confidence 4578889999999997654444444432 556788764 556667777777654
No 327
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=95.49 E-value=0.15 Score=47.26 Aligned_cols=41 Identities=15% Similarity=0.216 Sum_probs=26.4
Q ss_pred CCccEEEEecccccccCCCHHHHHHHHHHcCCCcceEEEecc
Q 013176 173 RRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSAT 214 (448)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT 214 (448)
...+++|||++|.|.... .+.+.++++.-+++..++++|..
T Consensus 106 g~~KV~iI~~a~~m~~~A-aNaLLKtLEEPp~~~~fiL~t~~ 146 (325)
T PRK06871 106 GGNKVVYIQGAERLTEAA-ANALLKTLEEPRPNTYFLLQADL 146 (325)
T ss_pred CCceEEEEechhhhCHHH-HHHHHHHhcCCCCCeEEEEEECC
Confidence 457899999999986543 45555666654455555554443
No 328
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.48 E-value=0.16 Score=41.66 Aligned_cols=53 Identities=17% Similarity=0.202 Sum_probs=37.3
Q ss_pred CCCccEEEEecccccccCC--CHHHHHHHHHHcCCCcceEEEeccCchHHHHHHH
Q 013176 172 LRRVTYLVLDEADRMLDMG--FEPQIRKIVTQIRPDRQTLYWSATWPREVETLAR 224 (448)
Q Consensus 172 ~~~~~~iIvDE~h~~~~~~--~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~ 224 (448)
...++++|+||+-.....+ -...+..+++..+....+|+.+-.+|+.+...+.
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD 147 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAAD 147 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCc
Confidence 4568999999999876665 3456666777666666777777777776655443
No 329
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=95.47 E-value=0.11 Score=50.63 Aligned_cols=152 Identities=14% Similarity=0.096 Sum_probs=83.6
Q ss_pred CCCCCCcHHHHhHHHHhhc------C----CcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHH
Q 013176 45 LGFVEPTPIQAQGWPMALK------G----RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAV 114 (448)
Q Consensus 45 ~~~~~~~~~Q~~~i~~~~~------~----~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~ 114 (448)
.+| .+-|||.-++.+++- + +..+|..|-+-|||..+...++..+.-.. ..+..+.|++|+.+-+.
T Consensus 58 ~p~-~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~----~~~~~~~i~A~s~~qa~ 132 (546)
T COG4626 58 FPE-SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW----RSGAGIYILAPSVEQAA 132 (546)
T ss_pred Ccc-ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh----hcCCcEEEEeccHHHHH
Confidence 345 789999999999882 1 35788899999999654422222222111 23677999999988888
Q ss_pred HHHHHHHHhhcCCCceEEEEEcCCCchHhHHHHhcC-CcEEEEccHHHHHHHHc--cccCCCCccEEEEecccccccCCC
Q 013176 115 QIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRG-VEIVIATPGRLIDMLEA--QHTNLRRVTYLVLDEADRMLDMGF 191 (448)
Q Consensus 115 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~iiv~T~~~l~~~~~~--~~~~~~~~~~iIvDE~h~~~~~~~ 191 (448)
+....++....... + . .....+... ..|...--......+.+ ...+-.+..+.||||.|.+...+
T Consensus 133 ~~F~~ar~mv~~~~--------~--l-~~~~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~- 200 (546)
T COG4626 133 NSFNPARDMVKRDD--------D--L-RDLCNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE- 200 (546)
T ss_pred HhhHHHHHHHHhCc--------c--h-hhhhccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH-
Confidence 87777776544322 0 0 000000000 01111111111122211 12233456799999999875532
Q ss_pred HHHHHHHHHHc--CCCcceEEEecc
Q 013176 192 EPQIRKIVTQI--RPDRQTLYWSAT 214 (448)
Q Consensus 192 ~~~~~~~~~~~--~~~~~~v~~SAT 214 (448)
..+..+..-+ .++.++++.|..
T Consensus 201 -~~~~~~~~g~~ar~~~l~~~ITT~ 224 (546)
T COG4626 201 -DMYSEAKGGLGARPEGLVVYITTS 224 (546)
T ss_pred -HHHHHHHhhhccCcCceEEEEecC
Confidence 3444444433 355667776653
No 330
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.44 E-value=0.055 Score=50.07 Aligned_cols=80 Identities=19% Similarity=0.288 Sum_probs=44.3
Q ss_pred ccccccCCCCHHHHHHHHHC--------------CCCCCcHHHHhHH------HHhhcC-----CcEEEEcCCCChHHHH
Q 013176 26 IRIFQEANFPDYCLEVIAKL--------------GFVEPTPIQAQGW------PMALKG-----RDLIGIAETGSGKTLS 80 (448)
Q Consensus 26 ~~~~~~~~l~~~l~~~~~~~--------------~~~~~~~~Q~~~i------~~~~~~-----~~~lv~~~tGsGKT~~ 80 (448)
...|+..+....|.+.++.- |..+.-..=+||+ |.+++| +.++.++|+|+|||+.
T Consensus 182 ~~~f~~~~~d~~Lve~lerdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlL 261 (491)
T KOG0738|consen 182 DKKFDSLGYDADLVEALERDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLL 261 (491)
T ss_pred cCCCCcccchHHHHHHHHHHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHH
Confidence 35577777777888777641 1111111122222 334444 5899999999999974
Q ss_pred HHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHH
Q 013176 81 YLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQ 117 (448)
Q Consensus 81 ~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~ 117 (448)
+- +++. .....++=+.+..|+..|.
T Consensus 262 AK--AvAT----------Ec~tTFFNVSsstltSKwR 286 (491)
T KOG0738|consen 262 AK--AVAT----------ECGTTFFNVSSSTLTSKWR 286 (491)
T ss_pred HH--HHHH----------hhcCeEEEechhhhhhhhc
Confidence 32 1111 1234566666666655443
No 331
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.42 E-value=0.045 Score=52.75 Aligned_cols=41 Identities=27% Similarity=0.361 Sum_probs=31.1
Q ss_pred cHHHHhHHHHhhcCC-c-EEEEcCCCChHHHHHHHHHHHHhhcC
Q 013176 51 TPIQAQGWPMALKGR-D-LIGIAETGSGKTLSYLLPAFVHVSAQ 92 (448)
Q Consensus 51 ~~~Q~~~i~~~~~~~-~-~lv~~~tGsGKT~~~~l~~l~~~~~~ 92 (448)
.+.|.+.+..++... . +++.+|||||||.+ ++.++..+...
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~~ 285 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNTP 285 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcCC
Confidence 777888887777654 3 56669999999976 77788777664
No 332
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.42 E-value=0.2 Score=47.75 Aligned_cols=18 Identities=28% Similarity=0.191 Sum_probs=14.3
Q ss_pred cEEEEcCCCChHHHHHHH
Q 013176 66 DLIGIAETGSGKTLSYLL 83 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~~~l 83 (448)
.+++.||.|+|||..+..
T Consensus 40 ~~L~~Gp~G~GKTtla~~ 57 (363)
T PRK14961 40 AWLLSGTRGVGKTTIARL 57 (363)
T ss_pred EEEEecCCCCCHHHHHHH
Confidence 358999999999976443
No 333
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.41 E-value=0.08 Score=51.68 Aligned_cols=21 Identities=29% Similarity=0.175 Sum_probs=16.0
Q ss_pred CcEEEEcCCCChHHHHHHHHH
Q 013176 65 RDLIGIAETGSGKTLSYLLPA 85 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~l~~ 85 (448)
.-++++||||+|||.+....+
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA 277 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLA 277 (484)
T ss_pred cEEEEECCCCccHHHHHHHHH
Confidence 357788999999998755433
No 334
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.40 E-value=0.14 Score=47.90 Aligned_cols=40 Identities=13% Similarity=0.238 Sum_probs=25.6
Q ss_pred CCccEEEEecccccccCCCHHHHHHHHHHcCCCcceEEEec
Q 013176 173 RRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSA 213 (448)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~SA 213 (448)
....++|+|||+.|.... ...+..++..-+.+..+++.+-
T Consensus 108 ~~~kviiidead~mt~~A-~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 108 GGYKVVIIDEADKLTEDA-ANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred CCceEEEeCcHHHHhHHH-HHHHHHHhccCCCCeEEEEEcC
Confidence 567899999999986532 4455555555445555555443
No 335
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.35 E-value=0.097 Score=46.15 Aligned_cols=53 Identities=26% Similarity=0.271 Sum_probs=32.2
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhh
Q 013176 64 GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (448)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~ 124 (448)
+..+++.+++|+|||...+-.+.+.+.+. +.++++++- .+-.+++.+.++.++
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~-------ge~vlyvs~-ee~~~~l~~~~~s~g 71 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKNF-------GEKVLYVSF-EEPPEELIENMKSFG 71 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHH-------T--EEEEES-SS-HHHHHHHHHTTT
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhhc-------CCcEEEEEe-cCCHHHHHHHHHHcC
Confidence 45788999999999976544444444431 234777764 344566666766653
No 336
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.33 E-value=0.56 Score=42.06 Aligned_cols=110 Identities=19% Similarity=0.251 Sum_probs=63.7
Q ss_pred HHhhcCC-----cEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEE
Q 013176 59 PMALKGR-----DLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTC 133 (448)
Q Consensus 59 ~~~~~~~-----~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~ 133 (448)
|.++.++ .+++.+|+|+||+..+ -+.+. . ..-.++-+.+..|+..|.-+-.++.+.
T Consensus 156 PqlFtGkR~PwrgiLLyGPPGTGKSYLA--KAVAT---E-------AnSTFFSvSSSDLvSKWmGESEkLVkn------- 216 (439)
T KOG0739|consen 156 PQLFTGKRKPWRGILLYGPPGTGKSYLA--KAVAT---E-------ANSTFFSVSSSDLVSKWMGESEKLVKN------- 216 (439)
T ss_pred hhhhcCCCCcceeEEEeCCCCCcHHHHH--HHHHh---h-------cCCceEEeehHHHHHHHhccHHHHHHH-------
Confidence 4455553 5899999999999642 22222 0 124678888888887766555554211
Q ss_pred EEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCC---CHHHHHHHHHHc--------
Q 013176 134 IYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMG---FEPQIRKIVTQI-------- 202 (448)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~---~~~~~~~~~~~~-------- 202 (448)
|+.+... ...++|+|||++.+.... -....++|...+
T Consensus 217 ---------------------------LFemARe-----~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG 264 (439)
T KOG0739|consen 217 ---------------------------LFEMARE-----NKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVG 264 (439)
T ss_pred ---------------------------HHHHHHh-----cCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccc
Confidence 1122221 236789999999876532 122333333222
Q ss_pred CCCcceEEEeccCchHH
Q 013176 203 RPDRQTLYWSATWPREV 219 (448)
Q Consensus 203 ~~~~~~v~~SAT~~~~~ 219 (448)
..+-.++.+.||-.+.+
T Consensus 265 ~d~~gvLVLgATNiPw~ 281 (439)
T KOG0739|consen 265 NDNDGVLVLGATNIPWV 281 (439)
T ss_pred cCCCceEEEecCCCchh
Confidence 13446788899865544
No 337
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.33 E-value=0.14 Score=47.70 Aligned_cols=35 Identities=17% Similarity=0.211 Sum_probs=26.0
Q ss_pred CcHHHHhHHHHhhcC-----CcEEEEcCCCChHHHHHHHH
Q 013176 50 PTPIQAQGWPMALKG-----RDLIGIAETGSGKTLSYLLP 84 (448)
Q Consensus 50 ~~~~Q~~~i~~~~~~-----~~~lv~~~tGsGKT~~~~l~ 84 (448)
.+|||...+..+... ...++.+|.|.|||..+...
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~ 41 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFA 41 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHH
Confidence 368888888777643 25789999999999765443
No 338
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=95.28 E-value=0.31 Score=46.02 Aligned_cols=109 Identities=14% Similarity=0.173 Sum_probs=58.3
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHh
Q 013176 64 GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQ 143 (448)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (448)
.+.+.+.|+.|.|||+. +-++.....-. .+.++ +..+.+.++.+.+.++.. ..
T Consensus 62 ~~GlYl~G~vG~GKT~L--md~f~~~lp~~-----~k~R~----HFh~Fm~~vh~~l~~~~~-----------~~----- 114 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTML--MDLFYDSLPIK-----RKRRV----HFHEFMLDVHSRLHQLRG-----------QD----- 114 (362)
T ss_pred CceEEEECCCCCchhHH--HHHHHHhCCcc-----ccccc----cccHHHHHHHHHHHHHhC-----------CC-----
Confidence 36799999999999985 33333322211 12233 335667777777777531 00
Q ss_pred HHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCCCHHHHHHHHHHc-CCCcceEEEeccCchH
Q 013176 144 IRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQI-RPDRQTLYWSATWPRE 218 (448)
Q Consensus 144 ~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~-~~~~~~v~~SAT~~~~ 218 (448)
+-+..... .......+|+|||.| +.+.+-.-.+..++..+ ....-+|+.|-++|.+
T Consensus 115 ---------------~~l~~va~---~l~~~~~lLcfDEF~-V~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~ 171 (362)
T PF03969_consen 115 ---------------DPLPQVAD---ELAKESRLLCFDEFQ-VTDIADAMILKRLFEALFKRGVVLVATSNRPPED 171 (362)
T ss_pred ---------------ccHHHHHH---HHHhcCCEEEEeeee-ccchhHHHHHHHHHHHHHHCCCEEEecCCCChHH
Confidence 00111110 012235689999999 44443333444444433 4556667777777654
No 339
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.28 E-value=0.11 Score=47.86 Aligned_cols=27 Identities=15% Similarity=0.128 Sum_probs=19.1
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhc
Q 013176 64 GRDLIGIAETGSGKTLSYLLPAFVHVSA 91 (448)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~l~~l~~~~~ 91 (448)
++++++.|++|+|||..+. ++...+..
T Consensus 156 ~~gl~L~G~~G~GKThLa~-Aia~~l~~ 182 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLA-AIANELAK 182 (306)
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHHH
Confidence 3579999999999998643 44444443
No 340
>PHA00729 NTP-binding motif containing protein
Probab=95.28 E-value=0.53 Score=40.97 Aligned_cols=17 Identities=35% Similarity=0.399 Sum_probs=14.5
Q ss_pred cEEEEcCCCChHHHHHH
Q 013176 66 DLIGIAETGSGKTLSYL 82 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~~~ 82 (448)
++++.|++|+|||..+.
T Consensus 19 nIlItG~pGvGKT~LA~ 35 (226)
T PHA00729 19 SAVIFGKQGSGKTTYAL 35 (226)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 78999999999997543
No 341
>PRK06904 replicative DNA helicase; Validated
Probab=95.26 E-value=0.32 Score=47.85 Aligned_cols=118 Identities=19% Similarity=0.104 Sum_probs=59.5
Q ss_pred hhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcC-CC
Q 013176 61 ALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGG-AP 139 (448)
Q Consensus 61 ~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~-~~ 139 (448)
+..+.=+++.|.||.|||.. .+-++..+... .+..++|++. ..-..|+..++-.... ++....+..+ .-
T Consensus 218 l~~G~LiiIaarPg~GKTaf-alnia~~~a~~------~g~~Vl~fSl-EMs~~ql~~Rlla~~s--~v~~~~i~~g~~l 287 (472)
T PRK06904 218 LQPSDLIIVAARPSMGKTTF-AMNLCENAAMA------SEKPVLVFSL-EMPAEQIMMRMLASLS--RVDQTKIRTGQNL 287 (472)
T ss_pred cCCCcEEEEEeCCCCChHHH-HHHHHHHHHHh------cCCeEEEEec-cCCHHHHHHHHHHhhC--CCCHHHhccCCCC
Confidence 33344566779999999964 44444433211 1445777654 4455666666544322 2222222222 22
Q ss_pred chHhHHH-------HhcCCcEEEE-----ccHHHHHHHHccccCCCCccEEEEeccccccc
Q 013176 140 KGPQIRD-------LRRGVEIVIA-----TPGRLIDMLEAQHTNLRRVTYLVLDEADRMLD 188 (448)
Q Consensus 140 ~~~~~~~-------~~~~~~iiv~-----T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~ 188 (448)
..+++.+ +...+++.|- |++.+.............+++||||=.|.+..
T Consensus 288 ~~~e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~ 348 (472)
T PRK06904 288 DQQDWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMRA 348 (472)
T ss_pred CHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCC
Confidence 2233322 2234446663 44555443332222223578999999997753
No 342
>PRK06620 hypothetical protein; Validated
Probab=95.25 E-value=0.069 Score=46.52 Aligned_cols=17 Identities=29% Similarity=0.186 Sum_probs=14.4
Q ss_pred CcEEEEcCCCChHHHHH
Q 013176 65 RDLIGIAETGSGKTLSY 81 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~ 81 (448)
+.++++||+|+|||...
T Consensus 45 ~~l~l~Gp~G~GKThLl 61 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLT 61 (214)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45899999999999853
No 343
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.21 E-value=0.21 Score=49.44 Aligned_cols=18 Identities=28% Similarity=0.237 Sum_probs=15.3
Q ss_pred cEEEEcCCCChHHHHHHH
Q 013176 66 DLIGIAETGSGKTLSYLL 83 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~~~l 83 (448)
..+++||.|+|||.++.+
T Consensus 45 a~Lf~Gp~G~GKTT~Ari 62 (507)
T PRK06645 45 GYLLTGIRGVGKTTSARI 62 (507)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 689999999999987554
No 344
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=95.20 E-value=0.34 Score=43.93 Aligned_cols=33 Identities=18% Similarity=0.165 Sum_probs=22.9
Q ss_pred CCcHHHHhHHHHhh----cCC-cEEEEcCCCChHHHHH
Q 013176 49 EPTPIQAQGWPMAL----KGR-DLIGIAETGSGKTLSY 81 (448)
Q Consensus 49 ~~~~~Q~~~i~~~~----~~~-~~lv~~~tGsGKT~~~ 81 (448)
.+++.+.+++..+. .+. .+++.||+|+|||...
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~ 60 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLI 60 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH
Confidence 45666666666543 223 5788999999999753
No 345
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.19 E-value=0.11 Score=54.11 Aligned_cols=37 Identities=14% Similarity=0.121 Sum_probs=21.2
Q ss_pred CCccEEEEecccccccCCCHHHHHHHHHHcCCCcceEE
Q 013176 173 RRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLY 210 (448)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~ 210 (448)
..+.++||||+|+|.... ...+.+++..-+....+|+
T Consensus 118 gk~KViIIDEAh~LT~eA-qNALLKtLEEPP~~vrFIL 154 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSS-FNALLKTLEEPPEHVKFLL 154 (944)
T ss_pred CCcEEEEEechHhcCHHH-HHHHHHHHhccCCCeEEEE
Confidence 357899999999985432 2333444444333444444
No 346
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=95.17 E-value=0.23 Score=50.44 Aligned_cols=39 Identities=8% Similarity=0.076 Sum_probs=23.0
Q ss_pred CCccEEEEecccccccCCCHHHHHHHHHHcCCCcceEEEe
Q 013176 173 RRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWS 212 (448)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~S 212 (448)
...+++||||+|.+.... ...+.+++...+....+|+.|
T Consensus 118 gk~KVIIIDEad~Ls~~A-~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKSA-FNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred CCcEEEEEECccccCHHH-HHHHHHHHHhCCCCcEEEEEe
Confidence 456899999999875432 233444444444445555444
No 347
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.16 E-value=0.29 Score=43.40 Aligned_cols=52 Identities=12% Similarity=0.118 Sum_probs=32.6
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhh
Q 013176 64 GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (448)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~ 124 (448)
+.-+++.+++|+|||..+...+...+.. +.+++|+.-. +-..++.+.+..++
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~~--------g~~~~y~~~e-~~~~~~~~~~~~~g 76 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALKQ--------GKKVYVITTE-NTSKSYLKQMESVK 76 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHhC--------CCEEEEEEcC-CCHHHHHHHHHHCC
Confidence 3567888999999997644433333332 5567777653 33456666666653
No 348
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.15 E-value=0.18 Score=47.87 Aligned_cols=51 Identities=24% Similarity=0.273 Sum_probs=31.6
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013176 64 GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (448)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~ 123 (448)
+.-+++.+++|+|||...+ .++..+... +.+++|+... +-..|+.....++
T Consensus 82 GslvLI~G~pG~GKStLll-q~a~~~a~~-------g~~VlYvs~E-Es~~qi~~Ra~rl 132 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLL-QVAARLAKR-------GGKVLYVSGE-ESPEQIKLRADRL 132 (372)
T ss_pred CeEEEEEeCCCCCHHHHHH-HHHHHHHhc-------CCeEEEEECC-cCHHHHHHHHHHc
Confidence 3567888999999997543 333333331 4568887653 3456666666554
No 349
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.15 E-value=0.16 Score=49.59 Aligned_cols=52 Identities=29% Similarity=0.341 Sum_probs=33.0
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhh
Q 013176 64 GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (448)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~ 124 (448)
+.-+++.+++|+|||...+ .++..+... +.+++|+.- .+-..|+....++++
T Consensus 80 Gs~~lI~G~pG~GKTtL~l-q~a~~~a~~-------g~~vlYvs~-Ees~~qi~~ra~rlg 131 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLL-QVAARLAAA-------GGKVLYVSG-EESASQIKLRAERLG 131 (446)
T ss_pred CEEEEEECCCCCCHHHHHH-HHHHHHHhc-------CCeEEEEEc-cccHHHHHHHHHHcC
Confidence 3467888999999997543 333333221 456888875 445567766666653
No 350
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=95.15 E-value=0.093 Score=49.08 Aligned_cols=42 Identities=12% Similarity=0.071 Sum_probs=26.7
Q ss_pred CCCccEEEEecccccccCCCHHHHHHHHHHcCCCcceEEEecc
Q 013176 172 LRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSAT 214 (448)
Q Consensus 172 ~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT 214 (448)
....+++|||++|.|.... .+.+.++++.-+++..++++|..
T Consensus 106 ~g~~kV~iI~~ae~m~~~A-aNaLLKtLEEPp~~t~fiL~t~~ 147 (334)
T PRK07993 106 LGGAKVVWLPDAALLTDAA-ANALLKTLEEPPENTWFFLACRE 147 (334)
T ss_pred cCCceEEEEcchHhhCHHH-HHHHHHHhcCCCCCeEEEEEECC
Confidence 3457899999999986543 45555555554444555555544
No 351
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=95.14 E-value=0.083 Score=54.88 Aligned_cols=62 Identities=24% Similarity=0.274 Sum_probs=53.2
Q ss_pred cCCcEEEEecchhHHHHHHHHHHhCC-----CCeEE-EcCCCCHHHHHHHHHHHhcCCCCEEEEeccc
Q 013176 271 DGSRILIFTETKKGCDQVTRQLRMDG-----WPALS-IHGDKNQSERDWVLAEFRSGRSPIMTATDVA 332 (448)
Q Consensus 271 ~~~k~lVf~~~~~~~~~l~~~L~~~~-----~~~~~-~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~ 332 (448)
.++++++.+||..-+.+.++.|++.. ..+.. ||+.++..++.+.+++|.+|+.+|||+|+.+
T Consensus 124 kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~F 191 (1187)
T COG1110 124 KGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQF 191 (1187)
T ss_pred cCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHH
Confidence 56899999999999999999887642 44333 9999999999999999999999999999654
No 352
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=95.13 E-value=0.12 Score=47.83 Aligned_cols=42 Identities=19% Similarity=0.247 Sum_probs=27.3
Q ss_pred CCCccEEEEecccccccCCCHHHHHHHHHHcCCCcceEEEecc
Q 013176 172 LRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSAT 214 (448)
Q Consensus 172 ~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT 214 (448)
....+++|||++|.|.... .+.+.++++.-+++..++++|..
T Consensus 106 ~~~~kV~iI~~ae~m~~~A-aNaLLKtLEEPp~~t~fiL~t~~ 147 (319)
T PRK06090 106 LNGYRLFVIEPADAMNESA-SNALLKTLEEPAPNCLFLLVTHN 147 (319)
T ss_pred cCCceEEEecchhhhCHHH-HHHHHHHhcCCCCCeEEEEEECC
Confidence 3457899999999986543 45566666655555555555554
No 353
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=95.10 E-value=0.019 Score=48.37 Aligned_cols=45 Identities=24% Similarity=0.291 Sum_probs=30.2
Q ss_pred HHHhcCCcEEEEccHHHHHHHHccccC--CCCccEEEEecccccccC
Q 013176 145 RDLRRGVEIVIATPGRLIDMLEAQHTN--LRRVTYLVLDEADRMLDM 189 (448)
Q Consensus 145 ~~~~~~~~iiv~T~~~l~~~~~~~~~~--~~~~~~iIvDE~h~~~~~ 189 (448)
+.....++|||+++..|++-....... ...-.+|||||||.+.+.
T Consensus 114 r~~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~~ 160 (174)
T PF06733_consen 114 RELAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLEDA 160 (174)
T ss_dssp HHCGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGGG
T ss_pred HHhcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHHH
Confidence 444567899999999987654433332 233468999999998653
No 354
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=95.09 E-value=0.11 Score=51.95 Aligned_cols=132 Identities=18% Similarity=0.149 Sum_probs=75.7
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCC--CceEEEEEcCCCch
Q 013176 64 GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRA--GIRSTCIYGGAPKG 141 (448)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~--~~~~~~~~~~~~~~ 141 (448)
.+-.++..|=-.|||+... +++..+.... .+.++++.+|.+..++...+++..+.... +-.+..+.| .
T Consensus 254 qk~tVflVPRR~GKTwivv-~iI~~ll~s~-----~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e--- 323 (738)
T PHA03368 254 QRATVFLVPRRHGKTWFLV-PLIALALATF-----RGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-E--- 323 (738)
T ss_pred ccceEEEecccCCchhhHH-HHHHHHHHhC-----CCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-c---
Confidence 3567788899999999755 4444333211 16789999999999999998888764421 111111222 1
Q ss_pred HhHHHHhcC--CcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCCCHHHHHHHHHHc-CCCcceEEEeccC
Q 013176 142 PQIRDLRRG--VEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQI-RPDRQTLYWSATW 215 (448)
Q Consensus 142 ~~~~~~~~~--~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~-~~~~~~v~~SAT~ 215 (448)
.....+..+ ..|.+.|. ...+...-..++++|||||+.+.... +..++-.+ ..+.+++++|.|-
T Consensus 324 ~I~i~f~nG~kstI~FaSa------rntNsiRGqtfDLLIVDEAqFIk~~a----l~~ilp~l~~~n~k~I~ISS~N 390 (738)
T PHA03368 324 TISFSFPDGSRSTIVFASS------HNTNGIRGQDFNLLFVDEANFIRPDA----VQTIMGFLNQTNCKIIFVSSTN 390 (738)
T ss_pred EEEEEecCCCccEEEEEec------cCCCCccCCcccEEEEechhhCCHHH----HHHHHHHHhccCccEEEEecCC
Confidence 000011112 24555531 11111223468999999999875533 33333222 3578889998874
No 355
>CHL00181 cbbX CbbX; Provisional
Probab=95.04 E-value=0.43 Score=43.66 Aligned_cols=19 Identities=26% Similarity=0.212 Sum_probs=15.6
Q ss_pred CcEEEEcCCCChHHHHHHH
Q 013176 65 RDLIGIAETGSGKTLSYLL 83 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~l 83 (448)
.++++.||+|+|||.++-.
T Consensus 60 ~~ill~G~pGtGKT~lAr~ 78 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALK 78 (287)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 3589999999999987554
No 356
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=95.03 E-value=0.18 Score=48.21 Aligned_cols=42 Identities=24% Similarity=0.354 Sum_probs=24.4
Q ss_pred CCccEEEEecccccccCCCHHHHHHHHHHcCCCcceEEEeccCc
Q 013176 173 RRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWP 216 (448)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~ 216 (448)
....++||||+|.+.... ...+.++++.-+++. ++++++|-+
T Consensus 116 ~~~kViiIDead~m~~~a-anaLLk~LEep~~~~-~fIL~a~~~ 157 (394)
T PRK07940 116 GRWRIVVIEDADRLTERA-ANALLKAVEEPPPRT-VWLLCAPSP 157 (394)
T ss_pred CCcEEEEEechhhcCHHH-HHHHHHHhhcCCCCC-eEEEEECCh
Confidence 456799999999986543 234444554433343 444455433
No 357
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=95.02 E-value=0.084 Score=48.35 Aligned_cols=58 Identities=28% Similarity=0.180 Sum_probs=42.3
Q ss_pred CCCCCcHHHHhHHHHhhcCC-cEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHH
Q 013176 46 GFVEPTPIQAQGWPMALKGR-DLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTREL 112 (448)
Q Consensus 46 ~~~~~~~~Q~~~i~~~~~~~-~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L 112 (448)
.|...++.|.+.+..+...+ ++++++.||||||.. +-++..... ...+++.+--|.+|
T Consensus 154 ~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl--LNal~~~i~-------~~eRvItiEDtaEL 212 (355)
T COG4962 154 IFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL--LNALSGFID-------SDERVITIEDTAEL 212 (355)
T ss_pred HcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH--HHHHHhcCC-------CcccEEEEeehhhh
Confidence 36678999999998877765 999999999999963 333332222 13478998887777
No 358
>PRK04841 transcriptional regulator MalT; Provisional
Probab=95.02 E-value=0.34 Score=52.43 Aligned_cols=44 Identities=16% Similarity=0.255 Sum_probs=33.2
Q ss_pred CCccEEEEecccccccCCCHHHHHHHHHHcCCCcceEEEeccCc
Q 013176 173 RRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWP 216 (448)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~ 216 (448)
...-+||+|++|.+.+......+..++...+++.++|+.|-+.+
T Consensus 120 ~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~ 163 (903)
T PRK04841 120 HQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLP 163 (903)
T ss_pred CCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCC
Confidence 34558999999988655445677788888888888888887743
No 359
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=94.98 E-value=0.25 Score=48.10 Aligned_cols=122 Identities=20% Similarity=0.113 Sum_probs=58.7
Q ss_pred HHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEc
Q 013176 57 GWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYG 136 (448)
Q Consensus 57 ~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~ 136 (448)
.+.-+..+.-+++.|++|+|||..++-.+....... +..++|++. ..-..|+..++-... .++....+..
T Consensus 187 ~~~G~~~g~liviag~pg~GKT~~al~ia~~~a~~~-------g~~v~~fSl-Em~~~~l~~Rl~~~~--~~v~~~~~~~ 256 (421)
T TIGR03600 187 LTNGLVKGDLIVIGARPSMGKTTLALNIAENVALRE-------GKPVLFFSL-EMSAEQLGERLLASK--SGINTGNIRT 256 (421)
T ss_pred HhcCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhC-------CCcEEEEEC-CCCHHHHHHHHHHHH--cCCCHHHHhc
Confidence 333344455677789999999965443333333232 445777753 333455554443321 1222222222
Q ss_pred CCCchHhHHHH------hcCCcEEEEc-----cHHHHHHHHccccCCCCccEEEEeccccccc
Q 013176 137 GAPKGPQIRDL------RRGVEIVIAT-----PGRLIDMLEAQHTNLRRVTYLVLDEADRMLD 188 (448)
Q Consensus 137 ~~~~~~~~~~~------~~~~~iiv~T-----~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~ 188 (448)
+.-...++..+ ..+.++.|.. .+.+.............+++||||=.|.+..
T Consensus 257 ~~l~~~~~~~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDyLql~~~ 319 (421)
T TIGR03600 257 GRFNDSDFNRLLNAVDRLSEKDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMAP 319 (421)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEecccccCC
Confidence 22222222221 1233455543 3334333332222223588999999998753
No 360
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=94.95 E-value=0.53 Score=44.64 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=18.4
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhc
Q 013176 65 RDLIGIAETGSGKTLSYLLPAFVHVSA 91 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~l~~l~~~~~ 91 (448)
.++++.|+||+|||.+.- -++..+..
T Consensus 43 ~n~~iyG~~GTGKT~~~~-~v~~~l~~ 68 (366)
T COG1474 43 SNIIIYGPTGTGKTATVK-FVMEELEE 68 (366)
T ss_pred ccEEEECCCCCCHhHHHH-HHHHHHHh
Confidence 368999999999997633 34444444
No 361
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=94.89 E-value=0.067 Score=50.45 Aligned_cols=27 Identities=22% Similarity=0.223 Sum_probs=19.6
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhh
Q 013176 63 KGRDLIGIAETGSGKTLSYLLPAFVHVS 90 (448)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~~l~~l~~~~ 90 (448)
.+..+++++|||||||.. +.+++..+.
T Consensus 133 ~~glilI~GpTGSGKTTt-L~aLl~~i~ 159 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTL-LAAIIRELA 159 (358)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHh
Confidence 456789999999999975 455555543
No 362
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.87 E-value=0.24 Score=50.17 Aligned_cols=39 Identities=13% Similarity=0.224 Sum_probs=23.6
Q ss_pred CCccEEEEecccccccCCCHHHHHHHHHHcCCCcceEEEe
Q 013176 173 RRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWS 212 (448)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~S 212 (448)
.+++++||||+|.+.... .+.+.+++...++...+|+.|
T Consensus 118 ~~~KVvIIdev~~Lt~~a-~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 118 SRYKIFIIDEVHMLSTNA-FNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred CCceEEEEEChhhCCHHH-HHHHHHHHHcCCCCeEEEEEe
Confidence 457899999999876433 334445555444444444444
No 363
>PRK10436 hypothetical protein; Provisional
Probab=94.87 E-value=0.1 Score=50.93 Aligned_cols=45 Identities=33% Similarity=0.478 Sum_probs=29.5
Q ss_pred HHCCCCCCcHHHHhHHHHhhc--CCcEEEEcCCCChHHHHHHHHHHHHhhc
Q 013176 43 AKLGFVEPTPIQAQGWPMALK--GRDLIGIAETGSGKTLSYLLPAFVHVSA 91 (448)
Q Consensus 43 ~~~~~~~~~~~Q~~~i~~~~~--~~~~lv~~~tGsGKT~~~~l~~l~~~~~ 91 (448)
..+|| .+.|.+.+..+.. +.-+++++|||||||.+ +.+++..+..
T Consensus 198 ~~LG~---~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTt-L~a~l~~~~~ 244 (462)
T PRK10436 198 ETLGM---TPAQLAQFRQALQQPQGLILVTGPTGSGKTVT-LYSALQTLNT 244 (462)
T ss_pred HHcCc---CHHHHHHHHHHHHhcCCeEEEECCCCCChHHH-HHHHHHhhCC
Confidence 44554 5556666665543 34578889999999976 4566666543
No 364
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.87 E-value=0.25 Score=41.70 Aligned_cols=145 Identities=18% Similarity=0.090 Sum_probs=70.7
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchH
Q 013176 63 KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGP 142 (448)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (448)
....+.+..++|.|||.+++-.++..+.. +.+|+++-=.+.-. -..+...+....++.....-.+.....
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~--------G~~V~ivQFlKg~~--~~GE~~~l~~l~~v~~~~~g~~~~~~~ 90 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGH--------GKKVGVVQFIKGAW--STGERNLLEFGGGVEFHVMGTGFTWET 90 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHC--------CCeEEEEEEecCCC--ccCHHHHHhcCCCcEEEECCCCCcccC
Confidence 45688899999999999877666665544 56677763222110 011111111111232222111100000
Q ss_pred hHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCCC--HHHHHHHHHHcCCCcceEEEeccCchHHH
Q 013176 143 QIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGF--EPQIRKIVTQIRPDRQTLYWSATWPREVE 220 (448)
Q Consensus 143 ~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~--~~~~~~~~~~~~~~~~~v~~SAT~~~~~~ 220 (448)
...+--.......+..... ...-..+++||+||+-...+.++ ...+..++..-++...+|+.--.+|+.+.
T Consensus 91 ------~~~~e~~~~~~~~~~~a~~-~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Li 163 (191)
T PRK05986 91 ------QDRERDIAAAREGWEEAKR-MLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELI 163 (191)
T ss_pred ------CCcHHHHHHHHHHHHHHHH-HHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHH
Confidence 0000000001111122111 12235689999999998877763 45566666665555566655555666555
Q ss_pred HHHH
Q 013176 221 TLAR 224 (448)
Q Consensus 221 ~~~~ 224 (448)
..+.
T Consensus 164 e~AD 167 (191)
T PRK05986 164 EAAD 167 (191)
T ss_pred HhCc
Confidence 5443
No 365
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=94.87 E-value=0.26 Score=43.95 Aligned_cols=40 Identities=30% Similarity=0.138 Sum_probs=25.7
Q ss_pred hcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcC
Q 013176 62 LKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAP 108 (448)
Q Consensus 62 ~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P 108 (448)
..+.-+++.|++|+|||...+-.+...+... +..+++++.
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~-------g~~vly~s~ 50 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKKQ-------GKPVLFFSL 50 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhC-------CCceEEEeC
Confidence 4456688899999999965443333333331 456788864
No 366
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=94.87 E-value=0.16 Score=51.39 Aligned_cols=40 Identities=13% Similarity=0.190 Sum_probs=24.9
Q ss_pred CCCccEEEEecccccccCCCHHHHHHHHHHcCCCcceEEEe
Q 013176 172 LRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWS 212 (448)
Q Consensus 172 ~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~S 212 (448)
....+++||||+|.+.... .+.+.+.+...++...+|+.+
T Consensus 130 ~a~~KVvIIDEad~Ls~~a-~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTAA-FNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCHHH-HHHHHHHHHhCCCCeEEEEEe
Confidence 3457899999999986533 334444455544555555544
No 367
>PRK10689 transcription-repair coupling factor; Provisional
Probab=94.85 E-value=0.16 Score=55.38 Aligned_cols=76 Identities=16% Similarity=0.176 Sum_probs=63.0
Q ss_pred hcCCcEEEEecchhHHHHHHHHHHhC----CCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEec-cccCCCCCCCccEE
Q 013176 270 MDGSRILIFTETKKGCDQVTRQLRMD----GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD-VAARGLDVKDIKCV 344 (448)
Q Consensus 270 ~~~~k~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-~~~~Gidi~~~~~V 344 (448)
..+.+++|.++|..-|.+.++.+++. ++.+..+++..+..++..+++.+++|..+|+|+|. .+...+++.++.++
T Consensus 647 ~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lL 726 (1147)
T PRK10689 647 ENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLL 726 (1147)
T ss_pred HcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEE
Confidence 35779999999999999999888753 45677899999999999999999999999999994 44555667777776
Q ss_pred E
Q 013176 345 V 345 (448)
Q Consensus 345 i 345 (448)
|
T Consensus 727 V 727 (1147)
T PRK10689 727 I 727 (1147)
T ss_pred E
Confidence 6
No 368
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.83 E-value=0.54 Score=47.39 Aligned_cols=39 Identities=21% Similarity=0.247 Sum_probs=23.9
Q ss_pred CCccEEEEecccccccCCCHHHHHHHHHHcCCCcceEEEe
Q 013176 173 RRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWS 212 (448)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~S 212 (448)
....++||||+|.+.... .+.+.+++...+....+|+.|
T Consensus 117 ~~~KVvIIDEah~Lt~~A-~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTAG-FNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred CCceEEEEECCCcCCHHH-HHHHHHHHhcCCCCeEEEEEe
Confidence 457899999999986543 334444455444444445444
No 369
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=94.77 E-value=0.045 Score=46.96 Aligned_cols=37 Identities=22% Similarity=0.269 Sum_probs=25.2
Q ss_pred CCccEEEEecccccccCCCHHHHHHHHHHcCCCcceEE
Q 013176 173 RRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLY 210 (448)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~ 210 (448)
.+.+.||+||||.|.+. ....+++......+..++.+
T Consensus 112 grhKIiILDEADSMT~g-AQQAlRRtMEiyS~ttRFal 148 (333)
T KOG0991|consen 112 GRHKIIILDEADSMTAG-AQQALRRTMEIYSNTTRFAL 148 (333)
T ss_pred CceeEEEeeccchhhhH-HHHHHHHHHHHHcccchhhh
Confidence 55789999999988653 34566666666655555543
No 370
>PRK10867 signal recognition particle protein; Provisional
Probab=94.76 E-value=0.36 Score=46.67 Aligned_cols=20 Identities=25% Similarity=0.190 Sum_probs=15.0
Q ss_pred cEEEEcCCCChHHHHHHHHH
Q 013176 66 DLIGIAETGSGKTLSYLLPA 85 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~~~l~~ 85 (448)
-+++++++|+|||.+..-.+
T Consensus 102 vI~~vG~~GsGKTTtaakLA 121 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLA 121 (433)
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 36778999999998755433
No 371
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.74 E-value=0.32 Score=47.82 Aligned_cols=18 Identities=28% Similarity=0.261 Sum_probs=14.7
Q ss_pred cEEEEcCCCChHHHHHHH
Q 013176 66 DLIGIAETGSGKTLSYLL 83 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~~~l 83 (448)
.++++||+|+|||..+.+
T Consensus 38 ~~Lf~GPpGtGKTTlA~~ 55 (472)
T PRK14962 38 AYIFAGPRGTGKTTVARI 55 (472)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 368999999999986544
No 372
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=94.72 E-value=0.15 Score=48.66 Aligned_cols=25 Identities=20% Similarity=0.240 Sum_probs=18.3
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhh
Q 013176 65 RDLIGIAETGSGKTLSYLLPAFVHVS 90 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~l~~l~~~~ 90 (448)
.++++.||+|+|||.+ +-.++..+.
T Consensus 41 ~~i~I~G~~GtGKT~l-~~~~~~~l~ 65 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAV-TKYVMKELE 65 (365)
T ss_pred CcEEEECCCCCCHHHH-HHHHHHHHH
Confidence 5799999999999976 344444443
No 373
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.70 E-value=0.59 Score=42.80 Aligned_cols=131 Identities=23% Similarity=0.314 Sum_probs=69.4
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEE-cCCCchHhH
Q 013176 66 DLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIY-GGAPKGPQI 144 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 144 (448)
-+++++-.|+|||.+ +--+.+++.++ +.+|++.+- ..-..--.++++.|+...+..++... |+.+..
T Consensus 141 Vil~vGVNG~GKTTT-IaKLA~~l~~~-------g~~VllaA~-DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAa--- 208 (340)
T COG0552 141 VILFVGVNGVGKTTT-IAKLAKYLKQQ-------GKSVLLAAG-DTFRAAAIEQLEVWGERLGVPVISGKEGADPAA--- 208 (340)
T ss_pred EEEEEecCCCchHhH-HHHHHHHHHHC-------CCeEEEEec-chHHHHHHHHHHHHHHHhCCeEEccCCCCCcHH---
Confidence 367779999999976 33344444442 555665544 22222223444444444566665422 222111
Q ss_pred HHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCC-CHHHHHHHHHHcCCCc------ceEEEeccCch
Q 013176 145 RDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMG-FEPQIRKIVTQIRPDR------QTLYWSATWPR 217 (448)
Q Consensus 145 ~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~-~~~~~~~~~~~~~~~~------~~v~~SAT~~~ 217 (448)
|+ ++.+.+. ..++++++++|-|-++-+.. .-..+.++.+.+.+.. -++.+-||...
T Consensus 209 --------Va-------fDAi~~A--kar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGq 271 (340)
T COG0552 209 --------VA-------FDAIQAA--KARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQ 271 (340)
T ss_pred --------HH-------HHHHHHH--HHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccCh
Confidence 11 1222221 23568899999999886643 3345555555554332 34555788766
Q ss_pred HHHHHHHH
Q 013176 218 EVETLARQ 225 (448)
Q Consensus 218 ~~~~~~~~ 225 (448)
+-..-++.
T Consensus 272 nal~QAk~ 279 (340)
T COG0552 272 NALSQAKI 279 (340)
T ss_pred hHHHHHHH
Confidence 54444443
No 374
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.63 E-value=0.16 Score=51.42 Aligned_cols=17 Identities=24% Similarity=0.227 Sum_probs=14.3
Q ss_pred EEEEcCCCChHHHHHHH
Q 013176 67 LIGIAETGSGKTLSYLL 83 (448)
Q Consensus 67 ~lv~~~tGsGKT~~~~l 83 (448)
.|++||.|+|||.++.+
T Consensus 41 ~Lf~Gp~GvGKTtlAr~ 57 (618)
T PRK14951 41 YLFTGTRGVGKTTVSRI 57 (618)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 58899999999987554
No 375
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.61 E-value=0.35 Score=48.37 Aligned_cols=39 Identities=10% Similarity=0.103 Sum_probs=23.4
Q ss_pred CCccEEEEecccccccCCCHHHHHHHHHHcCCCcceEEEe
Q 013176 173 RRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWS 212 (448)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~S 212 (448)
.+..++||||+|.+.... .+.+.+.+...+....+|+.|
T Consensus 118 ~~~kVvIIDEad~ls~~a-~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 118 GRFKVYIIDEVHMLSKSA-FNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred CCceEEEEcCcccCCHHH-HHHHHHHHhCCCCCEEEEEEe
Confidence 457899999999886543 233444444444445555544
No 376
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=94.59 E-value=0.56 Score=43.71 Aligned_cols=38 Identities=16% Similarity=0.281 Sum_probs=22.9
Q ss_pred CccEEEEecccccccCCCHHHHHHHHHHcCCCcceEEEe
Q 013176 174 RVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWS 212 (448)
Q Consensus 174 ~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~S 212 (448)
...+|++||+|.+.... ...+..++...++...+++.+
T Consensus 102 ~~~vviiDe~~~l~~~~-~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 102 PFKIIFLDEADNLTSDA-QQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred CceEEEEeCcccCCHHH-HHHHHHHHhcCCCCCeEEEEe
Confidence 35699999999875432 334455555544555555543
No 377
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.58 E-value=0.36 Score=48.16 Aligned_cols=39 Identities=10% Similarity=0.060 Sum_probs=23.4
Q ss_pred CCccEEEEecccccccCCCHHHHHHHHHHcCCCcceEEEe
Q 013176 173 RRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWS 212 (448)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~S 212 (448)
....++||||+|++.... ...+.+.+...+....+++.|
T Consensus 118 g~~kViIIDEa~~ls~~a-~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 118 GRYKVYLIDEVHMLSKQS-FNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred CCcEEEEEechhhccHHH-HHHHHHHHhcCCCCceEEEEE
Confidence 456799999999986543 234444444444444455444
No 378
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=94.53 E-value=0.43 Score=48.11 Aligned_cols=20 Identities=25% Similarity=0.199 Sum_probs=15.5
Q ss_pred cEEEEcCCCChHHHHHHHHH
Q 013176 66 DLIGIAETGSGKTLSYLLPA 85 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~~~l~~ 85 (448)
..|++||.|+|||.++-..+
T Consensus 40 ayLf~Gp~GtGKTt~Ak~lA 59 (559)
T PRK05563 40 AYLFSGPRGTGKTSAAKIFA 59 (559)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46889999999998755433
No 379
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.50 E-value=0.28 Score=47.28 Aligned_cols=19 Identities=26% Similarity=0.106 Sum_probs=15.3
Q ss_pred cEEEEcCCCChHHHHHHHH
Q 013176 66 DLIGIAETGSGKTLSYLLP 84 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~~~l~ 84 (448)
..+++||.|+|||.++...
T Consensus 40 a~lf~Gp~G~GKtt~A~~~ 58 (397)
T PRK14955 40 GYIFSGLRGVGKTTAARVF 58 (397)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 4788999999999875543
No 380
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=94.46 E-value=0.12 Score=48.89 Aligned_cols=27 Identities=26% Similarity=0.234 Sum_probs=19.8
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhc
Q 013176 64 GRDLIGIAETGSGKTLSYLLPAFVHVSA 91 (448)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~l~~l~~~~~ 91 (448)
+..+++++|||||||.. +.+++.++..
T Consensus 149 ~GlilI~G~TGSGKTT~-l~al~~~i~~ 175 (372)
T TIGR02525 149 AGLGLICGETGSGKSTL-AASIYQHCGE 175 (372)
T ss_pred CCEEEEECCCCCCHHHH-HHHHHHHHHh
Confidence 44688999999999965 5556665543
No 381
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=94.45 E-value=0.43 Score=41.90 Aligned_cols=30 Identities=27% Similarity=0.290 Sum_probs=20.1
Q ss_pred HhhcCC-cEEEEcCCCChHHHHHHHHHHHHhh
Q 013176 60 MALKGR-DLIGIAETGSGKTLSYLLPAFVHVS 90 (448)
Q Consensus 60 ~~~~~~-~~lv~~~tGsGKT~~~~l~~l~~~~ 90 (448)
.+..++ -+.++++.|||||...- +++....
T Consensus 46 ~i~d~qg~~~vtGevGsGKTv~~R-al~~s~~ 76 (269)
T COG3267 46 AIADGQGILAVTGEVGSGKTVLRR-ALLASLN 76 (269)
T ss_pred HHhcCCceEEEEecCCCchhHHHH-HHHHhcC
Confidence 344555 56778999999998755 4444433
No 382
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.43 E-value=0.45 Score=46.03 Aligned_cols=20 Identities=30% Similarity=0.242 Sum_probs=15.3
Q ss_pred cEEEEcCCCChHHHHHHHHH
Q 013176 66 DLIGIAETGSGKTLSYLLPA 85 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~~~l~~ 85 (448)
-+++++++|+|||.++.-.+
T Consensus 101 vi~~vG~~GsGKTTtaakLA 120 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLA 120 (428)
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 46788999999998755433
No 383
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=94.42 E-value=0.61 Score=48.66 Aligned_cols=19 Identities=26% Similarity=0.226 Sum_probs=16.0
Q ss_pred CcEEEEcCCCChHHHHHHH
Q 013176 65 RDLIGIAETGSGKTLSYLL 83 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~l 83 (448)
.++++.||+|+|||..+-.
T Consensus 208 ~n~LLvGppGvGKT~lae~ 226 (758)
T PRK11034 208 NNPLLVGESGVGKTAIAEG 226 (758)
T ss_pred CCeEEECCCCCCHHHHHHH
Confidence 5899999999999986443
No 384
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=94.40 E-value=0.071 Score=49.87 Aligned_cols=43 Identities=21% Similarity=0.211 Sum_probs=29.3
Q ss_pred hhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHH
Q 013176 61 ALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTREL 112 (448)
Q Consensus 61 ~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L 112 (448)
+..+.+++++|+||||||.. +-+++..+.. ..+++.+-.+.+|
T Consensus 159 v~~~~nilI~G~tGSGKTTl-l~aLl~~i~~--------~~rivtiEd~~El 201 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTM-SKTLISAIPP--------QERLITIEDTLEL 201 (344)
T ss_pred HHcCCeEEEECCCCccHHHH-HHHHHcccCC--------CCCEEEECCCccc
Confidence 44567999999999999964 4444443322 3457777777666
No 385
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=94.39 E-value=0.45 Score=39.55 Aligned_cols=53 Identities=15% Similarity=0.260 Sum_probs=35.8
Q ss_pred CCCccEEEEecccccccCCC--HHHHHHHHHHcCCCcceEEEeccCchHHHHHHH
Q 013176 172 LRRVTYLVLDEADRMLDMGF--EPQIRKIVTQIRPDRQTLYWSATWPREVETLAR 224 (448)
Q Consensus 172 ~~~~~~iIvDE~h~~~~~~~--~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~ 224 (448)
-..+++||+||+-...+.++ ...+..++...++...+|+..-.+|+.+...+.
T Consensus 95 ~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD 149 (173)
T TIGR00708 95 DPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELAD 149 (173)
T ss_pred cCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCc
Confidence 35689999999998777663 355666666666666666666666665555443
No 386
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=94.39 E-value=0.71 Score=42.23 Aligned_cols=18 Identities=28% Similarity=0.276 Sum_probs=15.4
Q ss_pred CcEEEEcCCCChHHHHHH
Q 013176 65 RDLIGIAETGSGKTLSYL 82 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~ 82 (448)
.++++.||+|+|||.++.
T Consensus 59 ~~vll~G~pGTGKT~lA~ 76 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVAL 76 (284)
T ss_pred ceEEEEcCCCCCHHHHHH
Confidence 479999999999998753
No 387
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=94.39 E-value=0.48 Score=40.32 Aligned_cols=24 Identities=21% Similarity=0.112 Sum_probs=16.7
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhh
Q 013176 66 DLIGIAETGSGKTLSYLLPAFVHVS 90 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~~~l~~l~~~~ 90 (448)
..++.+|.|+|||..+.. +...+.
T Consensus 16 ~~L~~G~~G~gkt~~a~~-~~~~l~ 39 (188)
T TIGR00678 16 AYLFAGPEGVGKELLALA-LAKALL 39 (188)
T ss_pred EEEEECCCCCCHHHHHHH-HHHHHc
Confidence 578899999999976433 334433
No 388
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=94.34 E-value=0.15 Score=51.51 Aligned_cols=45 Identities=38% Similarity=0.453 Sum_probs=30.3
Q ss_pred HHHCCCCCCcHHHHhHHHHhhcC--CcEEEEcCCCChHHHHHHHHHHHHhh
Q 013176 42 IAKLGFVEPTPIQAQGWPMALKG--RDLIGIAETGSGKTLSYLLPAFVHVS 90 (448)
Q Consensus 42 ~~~~~~~~~~~~Q~~~i~~~~~~--~~~lv~~~tGsGKT~~~~l~~l~~~~ 90 (448)
+..+|| .+.|.+.+..+... .-+++++|||||||.+ +.+++..+.
T Consensus 295 l~~lg~---~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTt-l~a~l~~~~ 341 (564)
T TIGR02538 295 IDKLGF---EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVS-LYTALNILN 341 (564)
T ss_pred HHHcCC---CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHH-HHHHHHhhC
Confidence 445565 56666676665543 3577889999999976 456666553
No 389
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=94.32 E-value=0.34 Score=45.95 Aligned_cols=43 Identities=16% Similarity=0.076 Sum_probs=25.5
Q ss_pred CCCccEEEEecccccccCCCHHHHHHHHHHcCCCcceEEEeccC
Q 013176 172 LRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATW 215 (448)
Q Consensus 172 ~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~ 215 (448)
.....++||||+|.+.... .+.+.++++..+....++++|..+
T Consensus 139 ~~~~kVviIDead~m~~~a-anaLLK~LEepp~~~~~IL~t~~~ 181 (365)
T PRK07471 139 EGGWRVVIVDTADEMNANA-ANALLKVLEEPPARSLFLLVSHAP 181 (365)
T ss_pred cCCCEEEEEechHhcCHHH-HHHHHHHHhcCCCCeEEEEEECCc
Confidence 3457899999999875432 334445555443444455555443
No 390
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=94.30 E-value=0.054 Score=45.44 Aligned_cols=35 Identities=26% Similarity=0.261 Sum_probs=24.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCc
Q 013176 67 LIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPT 109 (448)
Q Consensus 67 ~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~ 109 (448)
.++.+|++||||.- ++..+..+... +.+++++-|.
T Consensus 4 ~~i~GpM~sGKS~e-Li~~~~~~~~~-------~~~v~~~kp~ 38 (176)
T PF00265_consen 4 EFITGPMFSGKSTE-LIRRIHRYEIA-------GKKVLVFKPA 38 (176)
T ss_dssp EEEEESTTSSHHHH-HHHHHHHHHHT-------T-EEEEEEES
T ss_pred EEEECCcCChhHHH-HHHHHHHHHhC-------CCeEEEEEec
Confidence 46789999999975 44444444442 6678888884
No 391
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=94.27 E-value=0.93 Score=46.71 Aligned_cols=43 Identities=21% Similarity=0.283 Sum_probs=37.4
Q ss_pred CccEEEEecccccccCCCHHHHHHHHHHcCCCcceEEEeccCc
Q 013176 174 RVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWP 216 (448)
Q Consensus 174 ~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~ 216 (448)
..=++|+|..|.+.+......+..+++..+++...++.|-+-|
T Consensus 129 ~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP 171 (894)
T COG2909 129 GPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRP 171 (894)
T ss_pred CceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCC
Confidence 3458999999999998888899999999999999999888754
No 392
>PHA02535 P terminase ATPase subunit; Provisional
Probab=94.27 E-value=1.3 Score=44.07 Aligned_cols=93 Identities=14% Similarity=0.074 Sum_probs=66.7
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEE
Q 013176 26 IRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLV 105 (448)
Q Consensus 26 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vli 105 (448)
.+...+..+++.-.+.+...-...+.+||+..+..-...+.-++.-.==.|||+.+..-++..+... +...++
T Consensus 115 ~~~~~kn~~s~~~~~~l~~~~~~~l~~YQ~~W~~~~~~~r~r~ilKSRQiG~T~~fA~EA~~dal~~-------G~nqif 187 (581)
T PHA02535 115 KRKPVKNDISDEQTEKLIEAFLDSLFDYQKHWYRAGLHHRTRNILKSRQIGATYYFAREALEDALLT-------GRNQIF 187 (581)
T ss_pred ccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCccccceeeEeeecccchHHHHHHHHHHHHHhc-------CCceEE
Confidence 4445556678777777766544589999999986632234445555567799999887777665542 446899
Q ss_pred EcCcHHHHHHHHHHHHHhhc
Q 013176 106 LAPTRELAVQIQEEALKFGS 125 (448)
Q Consensus 106 l~P~~~L~~q~~~~~~~~~~ 125 (448)
+.|+++.+.+..+.+..+..
T Consensus 188 lSas~~QA~~f~~yi~~~a~ 207 (581)
T PHA02535 188 LSASKAQAHVFKQYIIAFAR 207 (581)
T ss_pred ECCCHHHHHHHHHHHHHHHH
Confidence 99999999998888887754
No 393
>PRK08840 replicative DNA helicase; Provisional
Probab=94.20 E-value=0.78 Score=45.09 Aligned_cols=121 Identities=17% Similarity=0.070 Sum_probs=58.7
Q ss_pred hHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHh-hcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEE
Q 013176 56 QGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHV-SAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCI 134 (448)
Q Consensus 56 ~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~-~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~ 134 (448)
+.+.-+..++=+++.|.+|.|||.-+ +-+...+ ..+ +..++|+.. ..-..|+..++-.... ++....+
T Consensus 209 ~~~~G~~~g~LiviaarPg~GKTafa-lnia~~~a~~~-------~~~v~~fSl-EMs~~ql~~Rlla~~s--~v~~~~i 277 (464)
T PRK08840 209 KKTAGLQGSDLIIVAARPSMGKTTFA-MNLCENAAMDQ-------DKPVLIFSL-EMPAEQLMMRMLASLS--RVDQTKI 277 (464)
T ss_pred HhhcCCCCCceEEEEeCCCCchHHHH-HHHHHHHHHhC-------CCeEEEEec-cCCHHHHHHHHHHhhC--CCCHHHH
Confidence 33444444455677799999999654 3333333 221 445766654 3445566655543221 2222112
Q ss_pred EcCCCchHhHHH-------HhcCCcEEEE-----ccHHHHHHHHccccCCCCccEEEEecccccc
Q 013176 135 YGGAPKGPQIRD-------LRRGVEIVIA-----TPGRLIDMLEAQHTNLRRVTYLVLDEADRML 187 (448)
Q Consensus 135 ~~~~~~~~~~~~-------~~~~~~iiv~-----T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~ 187 (448)
..+.-...++.. +....++.|- |...+.....+.......+++||||=.|.+.
T Consensus 278 ~~~~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~~~~~~~~lvvIDYLql~~ 342 (464)
T PRK08840 278 RTGQLDDEDWARISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIAREHGGLSMIMVDYLQLMR 342 (464)
T ss_pred hcCCCCHHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHhcC
Confidence 222222233322 2223345553 2334433332222222347899999999874
No 394
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.11 E-value=0.25 Score=49.74 Aligned_cols=20 Identities=25% Similarity=0.127 Sum_probs=15.9
Q ss_pred cEEEEcCCCChHHHHHHHHH
Q 013176 66 DLIGIAETGSGKTLSYLLPA 85 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~~~l~~ 85 (448)
.+|+.+|.|+|||.++.+.+
T Consensus 40 a~Lf~GPpG~GKTtiArilA 59 (624)
T PRK14959 40 AYLFSGTRGVGKTTIARIFA 59 (624)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 57889999999998765433
No 395
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=94.07 E-value=0.76 Score=48.24 Aligned_cols=18 Identities=28% Similarity=0.294 Sum_probs=15.5
Q ss_pred CcEEEEcCCCChHHHHHH
Q 013176 65 RDLIGIAETGSGKTLSYL 82 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~ 82 (448)
.+.++.||+|+|||..+-
T Consensus 204 ~n~lL~G~pG~GKT~l~~ 221 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIAE 221 (731)
T ss_pred CceEEECCCCCCHHHHHH
Confidence 589999999999997643
No 396
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.07 E-value=0.4 Score=48.73 Aligned_cols=19 Identities=26% Similarity=0.106 Sum_probs=15.4
Q ss_pred cEEEEcCCCChHHHHHHHH
Q 013176 66 DLIGIAETGSGKTLSYLLP 84 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~~~l~ 84 (448)
..|++||.|+|||.++.+.
T Consensus 40 a~Lf~Gp~GvGKttlA~~l 58 (620)
T PRK14954 40 GYIFSGLRGVGKTTAARVF 58 (620)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 4789999999999875543
No 397
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.06 E-value=1.7 Score=36.37 Aligned_cols=17 Identities=24% Similarity=0.288 Sum_probs=13.7
Q ss_pred EEEEcCCCChHHHHHHH
Q 013176 67 LIGIAETGSGKTLSYLL 83 (448)
Q Consensus 67 ~lv~~~tGsGKT~~~~l 83 (448)
+++.+++|+|||.....
T Consensus 3 ~~~~G~~G~GKTt~~~~ 19 (173)
T cd03115 3 ILLVGLQGVGKTTTAAK 19 (173)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 57789999999987543
No 398
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.06 E-value=0.11 Score=47.56 Aligned_cols=19 Identities=26% Similarity=0.249 Sum_probs=15.0
Q ss_pred CcEEEEcCCCChHHHHHHH
Q 013176 65 RDLIGIAETGSGKTLSYLL 83 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~l 83 (448)
+.+++++|||+|||.+..-
T Consensus 195 ~vi~~vGptGvGKTTt~~k 213 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAK 213 (282)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3577889999999976543
No 399
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.05 E-value=1.5 Score=40.74 Aligned_cols=53 Identities=25% Similarity=0.344 Sum_probs=30.6
Q ss_pred CCccEEEEecccccccCC-CHHHHHHHHHHc------CCCcceEEEeccCchHHHHHHHH
Q 013176 173 RRVTYLVLDEADRMLDMG-FEPQIRKIVTQI------RPDRQTLYWSATWPREVETLARQ 225 (448)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~-~~~~~~~~~~~~------~~~~~~v~~SAT~~~~~~~~~~~ 225 (448)
.++++||||=+-++.... .-..+..+.+.+ .+...++.++||...+....+..
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~ 254 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKA 254 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHH
Confidence 557899999998765332 223444444332 23445788899965543333333
No 400
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=94.01 E-value=0.078 Score=46.96 Aligned_cols=14 Identities=29% Similarity=0.378 Sum_probs=11.9
Q ss_pred EEEEcCCCChHHHH
Q 013176 67 LIGIAETGSGKTLS 80 (448)
Q Consensus 67 ~lv~~~tGsGKT~~ 80 (448)
++|.|+.|+|||..
T Consensus 1 ~vv~G~pGsGKSt~ 14 (234)
T PF01443_consen 1 IVVHGVPGSGKSTL 14 (234)
T ss_pred CEEEcCCCCCHHHH
Confidence 36889999999974
No 401
>PRK08506 replicative DNA helicase; Provisional
Probab=94.01 E-value=0.62 Score=45.98 Aligned_cols=115 Identities=17% Similarity=0.099 Sum_probs=57.5
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchH
Q 013176 63 KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGP 142 (448)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (448)
.+.-+++.|.||.|||..+ +-++..+..+ +..++|++. ..-..|+..++-.... ++....+..+.-...
T Consensus 191 ~G~LivIaarpg~GKT~fa-l~ia~~~~~~-------g~~V~~fSl-EMs~~ql~~Rlla~~s--~v~~~~i~~~~l~~~ 259 (472)
T PRK08506 191 KGDLIIIAARPSMGKTTLC-LNMALKALNQ-------DKGVAFFSL-EMPAEQLMLRMLSAKT--SIPLQNLRTGDLDDD 259 (472)
T ss_pred CCceEEEEcCCCCChHHHH-HHHHHHHHhc-------CCcEEEEeC-cCCHHHHHHHHHHHhc--CCCHHHHhcCCCCHH
Confidence 3445677799999999654 4444443332 445777654 4455666666544222 222211111221222
Q ss_pred hHHHH------hcCCcEEEE-----ccHHHHHHHHccccCCCCccEEEEeccccccc
Q 013176 143 QIRDL------RRGVEIVIA-----TPGRLIDMLEAQHTNLRRVTYLVLDEADRMLD 188 (448)
Q Consensus 143 ~~~~~------~~~~~iiv~-----T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~ 188 (448)
.+..+ ..+..+.|- |++.+...+.+.......+++||||=.|.+..
T Consensus 260 e~~~~~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~~ 316 (472)
T PRK08506 260 EWERLSDACDELSKKKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMSG 316 (472)
T ss_pred HHHHHHHHHHHHHcCCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhccC
Confidence 22221 122345543 34445444333222223578999999997753
No 402
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=94.00 E-value=0.25 Score=48.77 Aligned_cols=17 Identities=29% Similarity=0.432 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCChHHHH
Q 013176 64 GRDLIGIAETGSGKTLS 80 (448)
Q Consensus 64 ~~~~lv~~~tGsGKT~~ 80 (448)
.+.+++.+|+|+|||+.
T Consensus 216 p~GILLyGPPGTGKT~L 232 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLI 232 (512)
T ss_pred CcceEEECCCCCcHHHH
Confidence 46799999999999975
No 403
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.99 E-value=0.91 Score=40.90 Aligned_cols=37 Identities=22% Similarity=0.111 Sum_probs=24.1
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEc
Q 013176 63 KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLA 107 (448)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~ 107 (448)
.+.-++|.+++|+|||...+-.+.+.+.. +.+++|+.
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~--------Ge~vlyis 71 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASR--------GNPVLFVT 71 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhC--------CCcEEEEE
Confidence 34568889999999997544333333322 45677776
No 404
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=93.94 E-value=1.2 Score=42.29 Aligned_cols=146 Identities=16% Similarity=0.096 Sum_probs=61.6
Q ss_pred EEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHH---HHHHHHHhhcCCCceEEEEEcCCCchHhH
Q 013176 68 IGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQ---IQEEALKFGSRAGIRSTCIYGGAPKGPQI 144 (448)
Q Consensus 68 lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (448)
++.++.|+|||......++..+...+. ...++++..+..+... ....+..+... .+.+...........
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~-----~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-- 72 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPP-----GRRVIIASTYRQARDIFGRFWKGIIELLPS-WFEIKFNEWNDRKII-- 72 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS-------EEEEEESSHHHHHHHHHHHHHHHHTS-T-TTS--EEEE-SSEEE--
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCC-----CcEEEEecCHHHHHHHHHHhHHHHHHHHHH-hcCcccccCCCCcEE--
Confidence 467899999999988777777666421 2455666444444444 23333343333 222221100000000
Q ss_pred HHHhcCCcEEEEccHH---HHHHHHccccCCCCccEEEEecccccccCCCHHHHHHHHHHcCCCcceEEEeccC--chHH
Q 013176 145 RDLRRGVEIVIATPGR---LIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATW--PREV 219 (448)
Q Consensus 145 ~~~~~~~~iiv~T~~~---l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~--~~~~ 219 (448)
+..+..|.+.+.+. ...+ . -..++++++||+-.+.+..+...+....... .....++.|.|+ ....
T Consensus 73 --~~nG~~i~~~~~~~~~~~~~~-~-----G~~~~~i~iDE~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~p~~~~~~~ 143 (384)
T PF03237_consen 73 --LPNGSRIQFRGADSPDSGDNI-R-----GFEYDLIIIDEAAKVPDDAFSELIRRLRATW-GGSIRMYISTPPNPGGWF 143 (384)
T ss_dssp --ETTS-EEEEES-----SHHHH-H-----TS--SEEEEESGGGSTTHHHHHHHHHHHHCS-TT--EEEEEE---SSSHH
T ss_pred --ecCceEEEEeccccccccccc-c-----ccccceeeeeecccCchHHHHHHHHhhhhcc-cCcceEEeecCCCCCCce
Confidence 03344555555321 1111 1 1457899999988775543333333332222 222222444433 3344
Q ss_pred HHHHHHHcCCC
Q 013176 220 ETLARQFLRNP 230 (448)
Q Consensus 220 ~~~~~~~~~~~ 230 (448)
..+........
T Consensus 144 ~~~~~~~~~~~ 154 (384)
T PF03237_consen 144 YEIFQRNLDDD 154 (384)
T ss_dssp HHHHHHHHCTS
T ss_pred eeeeehhhcCC
Confidence 45555554444
No 405
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.86 E-value=0.87 Score=46.38 Aligned_cols=18 Identities=22% Similarity=0.228 Sum_probs=14.5
Q ss_pred cEEEEcCCCChHHHHHHH
Q 013176 66 DLIGIAETGSGKTLSYLL 83 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~~~l 83 (448)
..|+.||.|+|||.++..
T Consensus 40 a~Lf~Gp~G~GKTtlA~~ 57 (585)
T PRK14950 40 AYLFTGPRGVGKTSTARI 57 (585)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 358999999999986543
No 406
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=93.79 E-value=0.21 Score=45.07 Aligned_cols=44 Identities=30% Similarity=0.416 Sum_probs=29.0
Q ss_pred HHHCCCCCCcHHHHhHHHHhhc-C-CcEEEEcCCCChHHHHHHHHHHHHh
Q 013176 42 IAKLGFVEPTPIQAQGWPMALK-G-RDLIGIAETGSGKTLSYLLPAFVHV 89 (448)
Q Consensus 42 ~~~~~~~~~~~~Q~~~i~~~~~-~-~~~lv~~~tGsGKT~~~~l~~l~~~ 89 (448)
+..+|| .+.|.+.+..+.. . ..+++.++||||||.. +.+++..+
T Consensus 59 l~~lg~---~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~-l~all~~i 104 (264)
T cd01129 59 LEKLGL---KPENLEIFRKLLEKPHGIILVTGPTGSGKTTT-LYSALSEL 104 (264)
T ss_pred HHHcCC---CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHH-HHHHHhhh
Confidence 445555 5667777766554 3 3578889999999975 44455554
No 407
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.75 E-value=0.38 Score=47.77 Aligned_cols=23 Identities=26% Similarity=0.223 Sum_probs=16.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhh
Q 013176 67 LIGIAETGSGKTLSYLLPAFVHVS 90 (448)
Q Consensus 67 ~lv~~~tGsGKT~~~~l~~l~~~~ 90 (448)
.++.||.|+|||.++.. +...+.
T Consensus 39 ~Lf~GppGtGKTTlA~~-lA~~l~ 61 (504)
T PRK14963 39 YLFSGPRGVGKTTTARL-IAMAVN 61 (504)
T ss_pred EEEECCCCCCHHHHHHH-HHHHHh
Confidence 48999999999987543 344443
No 408
>PRK13764 ATPase; Provisional
Probab=93.74 E-value=0.16 Score=50.97 Aligned_cols=28 Identities=11% Similarity=0.135 Sum_probs=20.2
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhc
Q 013176 63 KGRDLIGIAETGSGKTLSYLLPAFVHVSA 91 (448)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~~l~~l~~~~~ 91 (448)
.+.++++++|||||||.. +.+++..+..
T Consensus 256 ~~~~ILIsG~TGSGKTTl-l~AL~~~i~~ 283 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTF-AQALAEFYAD 283 (602)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHhh
Confidence 356899999999999964 4455555543
No 409
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=93.68 E-value=0.84 Score=45.92 Aligned_cols=18 Identities=28% Similarity=0.154 Sum_probs=14.8
Q ss_pred cEEEEcCCCChHHHHHHH
Q 013176 66 DLIGIAETGSGKTLSYLL 83 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~~~l 83 (448)
..|+.||.|+|||..+..
T Consensus 40 A~Lf~GP~GvGKTTlA~~ 57 (605)
T PRK05896 40 AYIFSGPRGIGKTSIAKI 57 (605)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 578999999999976544
No 410
>PRK04328 hypothetical protein; Provisional
Probab=93.67 E-value=0.58 Score=41.89 Aligned_cols=52 Identities=19% Similarity=0.230 Sum_probs=33.0
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhh
Q 013176 64 GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (448)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~ 124 (448)
+..+++.+++|+|||...+-.+...+.+ +..++|+. +.+-..++.+.++.++
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~~~--------ge~~lyis-~ee~~~~i~~~~~~~g 74 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGLQM--------GEPGVYVA-LEEHPVQVRRNMRQFG 74 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhc--------CCcEEEEE-eeCCHHHHHHHHHHcC
Confidence 4568889999999997544334443333 44577765 4445566666666654
No 411
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=93.61 E-value=0.17 Score=49.98 Aligned_cols=45 Identities=24% Similarity=0.415 Sum_probs=29.9
Q ss_pred HHHCCCCCCcHHHHhHHHHhhcC-C-cEEEEcCCCChHHHHHHHHHHHHhh
Q 013176 42 IAKLGFVEPTPIQAQGWPMALKG-R-DLIGIAETGSGKTLSYLLPAFVHVS 90 (448)
Q Consensus 42 ~~~~~~~~~~~~Q~~~i~~~~~~-~-~~lv~~~tGsGKT~~~~l~~l~~~~ 90 (448)
+..+|| .+.|.+.+..+... + -+++.+|||||||.. +.+++..+.
T Consensus 221 l~~Lg~---~~~~~~~l~~~~~~~~GlilitGptGSGKTTt-L~a~L~~l~ 267 (486)
T TIGR02533 221 LETLGM---SPELLSRFERLIRRPHGIILVTGPTGSGKTTT-LYAALSRLN 267 (486)
T ss_pred HHHcCC---CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHH-HHHHHhccC
Confidence 344555 56677777666654 3 367889999999975 444555543
No 412
>PRK08006 replicative DNA helicase; Provisional
Probab=93.60 E-value=1.2 Score=43.77 Aligned_cols=115 Identities=18% Similarity=0.100 Sum_probs=57.5
Q ss_pred hcCCcEEEEcCCCChHHHHHHHHHHHHh-hcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCc
Q 013176 62 LKGRDLIGIAETGSGKTLSYLLPAFVHV-SAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPK 140 (448)
Q Consensus 62 ~~~~~~lv~~~tGsGKT~~~~l~~l~~~-~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (448)
..+.=+++.|.+|.|||.- .+-++..+ ..+ +..|+|+.. ..-.+|+..++-.... ++....+..+.-.
T Consensus 222 ~~G~LiiIaarPgmGKTaf-alnia~~~a~~~-------g~~V~~fSl-EM~~~ql~~Rlla~~~--~v~~~~i~~~~l~ 290 (471)
T PRK08006 222 QPSDLIIVAARPSMGKTTF-AMNLCENAAMLQ-------DKPVLIFSL-EMPGEQIMMRMLASLS--RVDQTRIRTGQLD 290 (471)
T ss_pred CCCcEEEEEeCCCCCHHHH-HHHHHHHHHHhc-------CCeEEEEec-cCCHHHHHHHHHHHhc--CCCHHHhhcCCCC
Confidence 3344566679999999964 44443333 221 445777654 3445566655543322 2222222222222
Q ss_pred hHhHHH-------HhcCCcEEEE-----ccHHHHHHHHccccCCCCccEEEEecccccc
Q 013176 141 GPQIRD-------LRRGVEIVIA-----TPGRLIDMLEAQHTNLRRVTYLVLDEADRML 187 (448)
Q Consensus 141 ~~~~~~-------~~~~~~iiv~-----T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~ 187 (448)
.+++.+ +....++.|- |++.+.....+.......+++||||=.|.+.
T Consensus 291 ~~e~~~~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~ 349 (471)
T PRK08006 291 DEDWARISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMR 349 (471)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHcc
Confidence 233322 2133455554 3444444333222222357899999999875
No 413
>PRK10865 protein disaggregation chaperone; Provisional
Probab=93.55 E-value=0.69 Score=49.30 Aligned_cols=18 Identities=33% Similarity=0.337 Sum_probs=15.4
Q ss_pred CcEEEEcCCCChHHHHHH
Q 013176 65 RDLIGIAETGSGKTLSYL 82 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~ 82 (448)
.+.++.||+|+|||..+-
T Consensus 200 ~n~lL~G~pGvGKT~l~~ 217 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIVE 217 (857)
T ss_pred CceEEECCCCCCHHHHHH
Confidence 489999999999997643
No 414
>PRK05748 replicative DNA helicase; Provisional
Probab=93.49 E-value=1 Score=44.34 Aligned_cols=115 Identities=14% Similarity=0.058 Sum_probs=56.6
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchH
Q 013176 63 KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGP 142 (448)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (448)
.+.-++|.|+||.|||.- .+.++..+... .+..+++++. ..-..|+..++-.... ++....+..+.-...
T Consensus 202 ~G~livIaarpg~GKT~~-al~ia~~~a~~------~g~~v~~fSl-Ems~~~l~~R~l~~~~--~v~~~~i~~~~l~~~ 271 (448)
T PRK05748 202 PNDLIIVAARPSVGKTAF-ALNIAQNVATK------TDKNVAIFSL-EMGAESLVMRMLCAEG--NIDAQRLRTGQLTDD 271 (448)
T ss_pred CCceEEEEeCCCCCchHH-HHHHHHHHHHh------CCCeEEEEeC-CCCHHHHHHHHHHHhc--CCCHHHhhcCCCCHH
Confidence 345577789999999964 44444443211 1445666654 4445566666532211 221111112222223
Q ss_pred hHHHH------hcCCcEEEE-----ccHHHHHHHHccccCCCCccEEEEecccccc
Q 013176 143 QIRDL------RRGVEIVIA-----TPGRLIDMLEAQHTNLRRVTYLVLDEADRML 187 (448)
Q Consensus 143 ~~~~~------~~~~~iiv~-----T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~ 187 (448)
++..+ ..+.++.|. |++.+...+.+.......+++||||=.|.+.
T Consensus 272 e~~~~~~a~~~l~~~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~ 327 (448)
T PRK05748 272 DWPKLTIAMGSLSDAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQ 327 (448)
T ss_pred HHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcC
Confidence 33221 123445553 3444544333222111257899999999875
No 415
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=93.49 E-value=0.4 Score=43.93 Aligned_cols=56 Identities=21% Similarity=0.198 Sum_probs=42.7
Q ss_pred CCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcC
Q 013176 47 FVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAP 108 (448)
Q Consensus 47 ~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P 108 (448)
+.-.++-|..-+.++.++.-++..+|-|+|||+.+...+..++... .-.++|.-=|
T Consensus 126 I~~kt~~Q~~y~eai~~~di~fGiGpAGTGKTyLava~av~al~~~------~v~rIiLtRP 181 (348)
T COG1702 126 IIPKTPGQNMYPEAIEEHDIVFGIGPAGTGKTYLAVAKAVDALGAG------QVRRIILTRP 181 (348)
T ss_pred eEecChhHHHHHHHHHhcCeeeeecccccCChhhhHHhHhhhhhhc------ccceeeecCc
Confidence 3356889999999999998889999999999988777777666553 1334555555
No 416
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=93.47 E-value=0.11 Score=48.46 Aligned_cols=43 Identities=21% Similarity=0.268 Sum_probs=28.4
Q ss_pred hhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHH
Q 013176 61 ALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTREL 112 (448)
Q Consensus 61 ~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L 112 (448)
+..+.+++++|+||||||.. +-+++..+.. ..+++.+--+.+|
T Consensus 157 v~~~~nili~G~tgSGKTTl-l~aL~~~ip~--------~~ri~tiEd~~El 199 (332)
T PRK13900 157 VISKKNIIISGGTSTGKTTF-TNAALREIPA--------IERLITVEDAREI 199 (332)
T ss_pred HHcCCcEEEECCCCCCHHHH-HHHHHhhCCC--------CCeEEEecCCCcc
Confidence 33567999999999999964 4455554433 3457766555554
No 417
>PRK07004 replicative DNA helicase; Provisional
Probab=93.45 E-value=0.55 Score=46.15 Aligned_cols=116 Identities=16% Similarity=0.090 Sum_probs=56.6
Q ss_pred hcCCcEEEEcCCCChHHHHHHHHHHHHh-hcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCc
Q 013176 62 LKGRDLIGIAETGSGKTLSYLLPAFVHV-SAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPK 140 (448)
Q Consensus 62 ~~~~~~lv~~~tGsGKT~~~~l~~l~~~-~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (448)
..+.=+++.|.+|+|||.. .+-+...+ ... +..+++++. ..-..|+..++-... .++....+..+.-.
T Consensus 211 ~~g~liviaarpg~GKT~~-al~ia~~~a~~~-------~~~v~~fSl-EM~~~ql~~R~la~~--~~v~~~~i~~g~l~ 279 (460)
T PRK07004 211 HGGELIIVAGRPSMGKTAF-SMNIGEYVAVEY-------GLPVAVFSM-EMPGTQLAMRMLGSV--GRLDQHRMRTGRLT 279 (460)
T ss_pred CCCceEEEEeCCCCCccHH-HHHHHHHHHHHc-------CCeEEEEeC-CCCHHHHHHHHHHhh--cCCCHHHHhcCCCC
Confidence 3344567789999999965 44343332 221 445666644 334455555543221 12222212222222
Q ss_pred hHhHHHH------hcCCcEEEE-----ccHHHHHHHHccccCCCCccEEEEeccccccc
Q 013176 141 GPQIRDL------RRGVEIVIA-----TPGRLIDMLEAQHTNLRRVTYLVLDEADRMLD 188 (448)
Q Consensus 141 ~~~~~~~------~~~~~iiv~-----T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~ 188 (448)
.+++..+ ....++.|. |+..+.....+.......+++||||=.|.+..
T Consensus 280 ~~e~~~~~~a~~~l~~~~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~~ 338 (460)
T PRK07004 280 DEDWPKLTHAVQKMSEAQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYLQLMSG 338 (460)
T ss_pred HHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEChhhhccC
Confidence 3333221 123456653 34444333322222223478999999998753
No 418
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=93.43 E-value=0.64 Score=46.24 Aligned_cols=39 Identities=10% Similarity=0.112 Sum_probs=24.9
Q ss_pred CCccEEEEecccccccCCCHHHHHHHHHHcCCCcceEEEe
Q 013176 173 RRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWS 212 (448)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~S 212 (448)
....++||||+|.+.... ...+.+.+...++...+++.+
T Consensus 116 ~~~KVvIIDEad~Lt~~A-~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 116 ARFKIFIIDEVHMLTKEA-FNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred CCeEEEEEECcccCCHHH-HHHHHHHHhhcCCceEEEEEE
Confidence 467899999999986543 334455555545555555544
No 419
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.37 E-value=0.86 Score=45.48 Aligned_cols=67 Identities=15% Similarity=0.111 Sum_probs=42.9
Q ss_pred cCCeEEecCCCCCcccccccCCCCHHHHHHHHH---CCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHH
Q 013176 12 RREITVEGHDVPRPIRIFQEANFPDYCLEVIAK---LGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSY 81 (448)
Q Consensus 12 ~~~~~~~~~~~~~p~~~~~~~~l~~~l~~~~~~---~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~ 81 (448)
.+...++....+.|..+|++.+=-+++.+.|+. ++..+|-.+.+-- +..-+.+|+.+|+|+|||+++
T Consensus 416 i~psa~Re~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~G---i~ppkGVLlyGPPGC~KT~lA 485 (693)
T KOG0730|consen 416 IRPSALREILVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFG---ISPPKGVLLYGPPGCGKTLLA 485 (693)
T ss_pred CCchhhhheeccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhc---CCCCceEEEECCCCcchHHHH
Confidence 334444556678889999999866666666653 3333333333222 223468999999999999863
No 420
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.30 E-value=0.15 Score=47.69 Aligned_cols=16 Identities=31% Similarity=0.565 Sum_probs=14.5
Q ss_pred CcEEEEcCCCChHHHH
Q 013176 65 RDLIGIAETGSGKTLS 80 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~ 80 (448)
+|+++.+|+|+|||+.
T Consensus 385 RNilfyGPPGTGKTm~ 400 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMF 400 (630)
T ss_pred hheeeeCCCCCCchHH
Confidence 5899999999999975
No 421
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=93.25 E-value=0.8 Score=48.91 Aligned_cols=18 Identities=33% Similarity=0.337 Sum_probs=15.4
Q ss_pred CcEEEEcCCCChHHHHHH
Q 013176 65 RDLIGIAETGSGKTLSYL 82 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~ 82 (448)
.+.+++||+|+|||..+-
T Consensus 195 ~n~lL~G~pGvGKT~l~~ 212 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIVE 212 (852)
T ss_pred CceEEEcCCCCCHHHHHH
Confidence 589999999999997644
No 422
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.20 E-value=0.087 Score=50.80 Aligned_cols=60 Identities=13% Similarity=0.182 Sum_probs=33.3
Q ss_pred cCCCCCcccccccC---CCCHHHHHHHHHCCCCCCcHHHHhHHHHhh--cCCcEEEEcCCCChHHHH
Q 013176 19 GHDVPRPIRIFQEA---NFPDYCLEVIAKLGFVEPTPIQAQGWPMAL--KGRDLIGIAETGSGKTLS 80 (448)
Q Consensus 19 ~~~~~~p~~~~~~~---~l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~--~~~~~lv~~~tGsGKT~~ 80 (448)
.+.+..|--.|+++ +|+.+....++.. | .-|-+--+.++.+- .=+.+++.+|+|+|||+.
T Consensus 208 ~n~ii~Pdf~Fe~mGIGGLd~EFs~IFRRA-F-AsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLi 272 (744)
T KOG0741|consen 208 SNSIINPDFNFESMGIGGLDKEFSDIFRRA-F-ASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLI 272 (744)
T ss_pred hccccCCCCChhhcccccchHHHHHHHHHH-H-HhhcCCHHHHHHcCccceeeEEEECCCCCChhHH
Confidence 35566777778886 4555555554321 1 01111112222211 115789999999999986
No 423
>CHL00095 clpC Clp protease ATP binding subunit
Probab=93.20 E-value=1 Score=47.85 Aligned_cols=19 Identities=37% Similarity=0.239 Sum_probs=16.0
Q ss_pred CcEEEEcCCCChHHHHHHH
Q 013176 65 RDLIGIAETGSGKTLSYLL 83 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~l 83 (448)
++.++.||+|+|||..+-.
T Consensus 201 ~n~lL~G~pGvGKTal~~~ 219 (821)
T CHL00095 201 NNPILIGEPGVGKTAIAEG 219 (821)
T ss_pred CCeEEECCCCCCHHHHHHH
Confidence 5899999999999976543
No 424
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=93.18 E-value=0.98 Score=44.25 Aligned_cols=112 Identities=20% Similarity=0.127 Sum_probs=55.4
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHH-hhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCch
Q 013176 63 KGRDLIGIAETGSGKTLSYLLPAFVH-VSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKG 141 (448)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~~l~~l~~-~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (448)
.+.-+++.|++|+|||.. ++-++.. +... +..+++++. ..-..|+.+++...... +....+..+.-..
T Consensus 194 ~G~l~vi~g~pg~GKT~~-~l~~a~~~a~~~-------g~~vl~~Sl-Em~~~~i~~R~~~~~~~--v~~~~~~~g~l~~ 262 (434)
T TIGR00665 194 PSDLIILAARPSMGKTAF-ALNIAENAAIKE-------GKPVAFFSL-EMSAEQLAMRMLSSESR--VDSQKLRTGKLSD 262 (434)
T ss_pred CCeEEEEEeCCCCChHHH-HHHHHHHHHHhC-------CCeEEEEeC-cCCHHHHHHHHHHHhcC--CCHHHhccCCCCH
Confidence 344567789999999964 4444443 3221 445777754 34455555555443222 2211111221122
Q ss_pred HhHH-------HHhcCCcEEEE-----ccHHHHHHHHccccCCCCccEEEEecccccc
Q 013176 142 PQIR-------DLRRGVEIVIA-----TPGRLIDMLEAQHTNLRRVTYLVLDEADRML 187 (448)
Q Consensus 142 ~~~~-------~~~~~~~iiv~-----T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~ 187 (448)
.++. .+.. ..+.|. |++.+...+...... ..+++||||=.+.+.
T Consensus 263 ~~~~~~~~a~~~l~~-~~l~i~d~~~~~~~~i~~~i~~~~~~-~~~~~vvID~l~~i~ 318 (434)
T TIGR00665 263 EDWEKLTSAAGKLSE-APLYIDDTPGLTITELRAKARRLKRE-HGLGLIVIDYLQLMS 318 (434)
T ss_pred HHHHHHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHHHh-cCCCEEEEcchHhcC
Confidence 2221 2222 344542 344454433322221 247899999998774
No 425
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.17 E-value=0.31 Score=45.92 Aligned_cols=42 Identities=17% Similarity=0.218 Sum_probs=26.1
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHH
Q 013176 64 GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTREL 112 (448)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L 112 (448)
+..+++++|||||||.. +..++..+... .+.+++.+-...++
T Consensus 122 ~g~ili~G~tGSGKTT~-l~al~~~i~~~------~~~~i~tiEdp~E~ 163 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTT-LASMIDYINKN------AAGHIITIEDPIEY 163 (343)
T ss_pred CcEEEEECCCCCCHHHH-HHHHHHhhCcC------CCCEEEEEcCChhh
Confidence 45788999999999975 44455444321 13456666544443
No 426
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=93.16 E-value=0.64 Score=43.83 Aligned_cols=40 Identities=18% Similarity=0.127 Sum_probs=25.0
Q ss_pred CCccEEEEecccccccCCCHHHHHHHHHHcCCCcceEEEec
Q 013176 173 RRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSA 213 (448)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~SA 213 (448)
....++||||+|.+.... .+.+.++++..++...++++|.
T Consensus 140 g~~rVviIDeAd~l~~~a-anaLLk~LEEpp~~~~fiLit~ 179 (351)
T PRK09112 140 GNWRIVIIDPADDMNRNA-ANAILKTLEEPPARALFILISH 179 (351)
T ss_pred CCceEEEEEchhhcCHHH-HHHHHHHHhcCCCCceEEEEEC
Confidence 457799999999985543 3445555555444455555553
No 427
>PF05729 NACHT: NACHT domain
Probab=93.12 E-value=0.75 Score=37.90 Aligned_cols=24 Identities=25% Similarity=0.184 Sum_probs=16.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhhc
Q 013176 67 LIGIAETGSGKTLSYLLPAFVHVSA 91 (448)
Q Consensus 67 ~lv~~~tGsGKT~~~~l~~l~~~~~ 91 (448)
++|.|+.|+|||... ..+...+..
T Consensus 3 l~I~G~~G~GKStll-~~~~~~~~~ 26 (166)
T PF05729_consen 3 LWISGEPGSGKSTLL-RKLAQQLAE 26 (166)
T ss_pred EEEECCCCCChHHHH-HHHHHHHHh
Confidence 678899999999753 344444443
No 428
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=93.11 E-value=0.22 Score=46.21 Aligned_cols=17 Identities=29% Similarity=0.258 Sum_probs=14.4
Q ss_pred CcEEEEcCCCChHHHHH
Q 013176 65 RDLIGIAETGSGKTLSY 81 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~ 81 (448)
.++++.||+|+|||..+
T Consensus 31 ~~~ll~Gp~G~GKT~la 47 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLA 47 (305)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 46899999999999753
No 429
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.04 E-value=1.1 Score=45.69 Aligned_cols=41 Identities=10% Similarity=0.105 Sum_probs=23.8
Q ss_pred CCCccEEEEecccccccCCCHHHHHHHHHHcCCCcceEEEecc
Q 013176 172 LRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSAT 214 (448)
Q Consensus 172 ~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT 214 (448)
.....++||||+|.+.... ...+.+++...+....+| +++|
T Consensus 119 ~~~~KVvIIdea~~Ls~~a-~naLLK~LEepp~~tifI-L~tt 159 (614)
T PRK14971 119 IGKYKIYIIDEVHMLSQAA-FNAFLKTLEEPPSYAIFI-LATT 159 (614)
T ss_pred cCCcEEEEEECcccCCHHH-HHHHHHHHhCCCCCeEEE-EEeC
Confidence 4467899999999985432 334444444433334333 4444
No 430
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=93.02 E-value=0.67 Score=45.98 Aligned_cols=60 Identities=20% Similarity=0.170 Sum_probs=40.5
Q ss_pred hHHHHhhcC-----CcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhh
Q 013176 56 QGWPMALKG-----RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (448)
Q Consensus 56 ~~i~~~~~~-----~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~ 124 (448)
.-++.++.+ .-+++.+|+|+|||...+-.+...+.. +.+++|++ ..+-..|+...++.++
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~--------ge~~~y~s-~eEs~~~i~~~~~~lg 314 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACAN--------KERAILFA-YEESRAQLLRNAYSWG 314 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHC--------CCeEEEEE-eeCCHHHHHHHHHHcC
Confidence 445555544 468888999999997644433333322 55688876 5777788888888764
No 431
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.02 E-value=0.73 Score=47.01 Aligned_cols=19 Identities=26% Similarity=0.256 Sum_probs=15.2
Q ss_pred CcEEEEcCCCChHHHHHHH
Q 013176 65 RDLIGIAETGSGKTLSYLL 83 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~l 83 (448)
...|+.||.|+|||..+..
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~ 57 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARI 57 (620)
T ss_pred ceEEEECCCCCChHHHHHH
Confidence 3578999999999976543
No 432
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=92.99 E-value=2.2 Score=42.66 Aligned_cols=62 Identities=13% Similarity=0.042 Sum_probs=33.3
Q ss_pred cCCCCCcccccccCCCCHHHHHHHHH---CCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHH
Q 013176 19 GHDVPRPIRIFQEANFPDYCLEVIAK---LGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLL 83 (448)
Q Consensus 19 ~~~~~~p~~~~~~~~l~~~l~~~~~~---~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l 83 (448)
+-....|...|.+.+=.+...+.++. ..+..+..++. ..+.....+|+.||+|+|||+.+-.
T Consensus 231 ~~~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~---~~~~~~~giLl~GpPGtGKT~lAka 295 (494)
T COG0464 231 GVLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRK---LGLRPPKGVLLYGPPGTGKTLLAKA 295 (494)
T ss_pred ccccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHh---cCCCCCCeeEEECCCCCCHHHHHHH
Confidence 34455677778876533333333332 22222222222 0122234799999999999986543
No 433
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=92.98 E-value=0.13 Score=50.44 Aligned_cols=40 Identities=20% Similarity=0.324 Sum_probs=24.0
Q ss_pred CCCccEEEEecccccccCCCHHHHHHHHHHcCCCcceEEEecc
Q 013176 172 LRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSAT 214 (448)
Q Consensus 172 ~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT 214 (448)
..++++.||||+|++....|. .+.+.+.. |..+++++=||
T Consensus 117 ~~ryKVyiIDEvHMLS~~afN-ALLKTLEE--PP~hV~FIlAT 156 (515)
T COG2812 117 EGRYKVYIIDEVHMLSKQAFN-ALLKTLEE--PPSHVKFILAT 156 (515)
T ss_pred cccceEEEEecHHhhhHHHHH-HHhccccc--CccCeEEEEec
Confidence 456889999999987554433 22223222 44555555565
No 434
>COG4907 Predicted membrane protein [Function unknown]
Probab=92.98 E-value=0.077 Score=49.68 Aligned_cols=9 Identities=11% Similarity=-0.009 Sum_probs=6.2
Q ss_pred cCCCChHHH
Q 013176 71 AETGSGKTL 79 (448)
Q Consensus 71 ~~tGsGKT~ 79 (448)
.|++.||+-
T Consensus 178 hp~~~~ev~ 186 (595)
T COG4907 178 HPPLTGEVD 186 (595)
T ss_pred cCCccceee
Confidence 677777764
No 435
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=92.95 E-value=0.87 Score=41.05 Aligned_cols=117 Identities=18% Similarity=0.130 Sum_probs=56.6
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchH
Q 013176 63 KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGP 142 (448)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (448)
.+.=+++.|.+|.|||..++-.+...+... +..|+|++.- .-.+++..++-.... ++....+..+.-...
T Consensus 18 ~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~-------~~~vly~SlE-m~~~~l~~R~la~~s--~v~~~~i~~g~l~~~ 87 (259)
T PF03796_consen 18 PGELTVIAARPGVGKTAFALQIALNAALNG-------GYPVLYFSLE-MSEEELAARLLARLS--GVPYNKIRSGDLSDE 87 (259)
T ss_dssp TT-EEEEEESTTSSHHHHHHHHHHHHHHTT-------SSEEEEEESS-S-HHHHHHHHHHHHH--TSTHHHHHCCGCHHH
T ss_pred cCcEEEEEecccCCchHHHHHHHHHHHHhc-------CCeEEEEcCC-CCHHHHHHHHHHHhh--cchhhhhhccccCHH
Confidence 334567779999999975444444444332 4568888762 222333433332211 111111111211122
Q ss_pred hHHHH------hcCCcEEE-Ec----cHHHHHHHHccccCCCCccEEEEecccccccC
Q 013176 143 QIRDL------RRGVEIVI-AT----PGRLIDMLEAQHTNLRRVTYLVLDEADRMLDM 189 (448)
Q Consensus 143 ~~~~~------~~~~~iiv-~T----~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~ 189 (448)
++..+ .....++| .+ ++.+...+.........+++||||=.|.+...
T Consensus 88 e~~~~~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~ 145 (259)
T PF03796_consen 88 EFERLQAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSE 145 (259)
T ss_dssp HHHHHHHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTS
T ss_pred HHHHHHHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCC
Confidence 22221 12233443 33 33454444433333367889999999988763
No 436
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=92.95 E-value=0.65 Score=41.42 Aligned_cols=20 Identities=30% Similarity=0.230 Sum_probs=17.1
Q ss_pred hhcCCcEEEEcCCCChHHHH
Q 013176 61 ALKGRDLIGIAETGSGKTLS 80 (448)
Q Consensus 61 ~~~~~~~lv~~~tGsGKT~~ 80 (448)
+..|+.+++.+|.|+|||..
T Consensus 13 i~~Gqr~~I~G~~G~GKTTL 32 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTTL 32 (249)
T ss_pred cCCCCEEEEECCCCCCHHHH
Confidence 45788999999999999963
No 437
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=92.92 E-value=0.35 Score=44.68 Aligned_cols=42 Identities=24% Similarity=0.158 Sum_probs=26.7
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHH
Q 013176 64 GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELA 113 (448)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~ 113 (448)
+.-+.+.+|+|+|||..++-.+...... +.+++|+..-..+-
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~~~~~~--------g~~v~yId~E~~~~ 96 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIAEAQKA--------GGTAAFIDAEHALD 96 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--------CCcEEEEcccchhH
Confidence 3567888999999997654433333222 55678876544443
No 438
>PRK08760 replicative DNA helicase; Provisional
Probab=92.88 E-value=1.7 Score=43.04 Aligned_cols=112 Identities=18% Similarity=0.091 Sum_probs=56.6
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHh-hcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchH
Q 013176 64 GRDLIGIAETGSGKTLSYLLPAFVHV-SAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGP 142 (448)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~l~~l~~~-~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (448)
+.=++|.|.+|.|||..+ +-++..+ ... +..++|++. ..-..|+..++......... ..+..+.-...
T Consensus 229 G~LivIaarPg~GKTafa-l~iA~~~a~~~-------g~~V~~fSl-EMs~~ql~~Rl~a~~s~i~~--~~i~~g~l~~~ 297 (476)
T PRK08760 229 TDLIILAARPAMGKTTFA-LNIAEYAAIKS-------KKGVAVFSM-EMSASQLAMRLISSNGRINA--QRLRTGALEDE 297 (476)
T ss_pred CceEEEEeCCCCChhHHH-HHHHHHHHHhc-------CCceEEEec-cCCHHHHHHHHHHhhCCCcH--HHHhcCCCCHH
Confidence 345677799999999654 4444333 221 345777654 34445666666554322221 11222222223
Q ss_pred hHHHH------hcCCcEEEE-----ccHHHHHHHHccccCCCCccEEEEecccccc
Q 013176 143 QIRDL------RRGVEIVIA-----TPGRLIDMLEAQHTNLRRVTYLVLDEADRML 187 (448)
Q Consensus 143 ~~~~~------~~~~~iiv~-----T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~ 187 (448)
++..+ .....+.|. |++.+......... ...+++||||=.+.+.
T Consensus 298 e~~~~~~a~~~l~~~~l~I~d~~~~t~~~I~~~~r~l~~-~~~~~lVvIDyLql~~ 352 (476)
T PRK08760 298 DWARVTGAIKMLKETKIFIDDTPGVSPEVLRSKCRRLKR-EHDLGLIVIDYLQLMS 352 (476)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEecHHhcC
Confidence 32221 122445554 34455443332221 2347899999999774
No 439
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=92.81 E-value=0.3 Score=46.09 Aligned_cols=87 Identities=17% Similarity=0.126 Sum_probs=49.4
Q ss_pred CCHHHHHHHHhcCCeEEecCCCC-Cccccccc-------CCCCHHHHHHHHHCCCC---CCcHHHHhHHHH---------
Q 013176 1 MTETEVKMYRARREITVEGHDVP-RPIRIFQE-------ANFPDYCLEVIAKLGFV---EPTPIQAQGWPM--------- 60 (448)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~-------~~l~~~l~~~~~~~~~~---~~~~~Q~~~i~~--------- 60 (448)
++..+++.|.=+....+.|...| ++-..|.. .+.+++-... ...|. .++|..+..+..
T Consensus 81 vs~~~ir~~~lr~gd~v~g~~r~~~~~e~~~~l~~v~~vng~~~~~~~~--r~~f~~l~p~~p~~R~~le~~~~~~~~~r 158 (416)
T PRK09376 81 VSPSQIRRFNLRTGDTVEGKIRPPKEGERYFALLKVETVNGEDPEKARN--RPLFENLTPLYPNERLRLETGNPEDLSTR 158 (416)
T ss_pred eCHHHHHhcCCCCCCEEEEEeeCCCCCCCccceEEEeeeCCCCHHHhcC--CCCcccCCCCChhhcccccCCCCccccee
Confidence 35678999999999999986544 32222111 2444433322 22333 234444444332
Q ss_pred -------hhcCCcEEEEcCCCChHHHHHHHHHHHHhh
Q 013176 61 -------ALKGRDLIGIAETGSGKTLSYLLPAFVHVS 90 (448)
Q Consensus 61 -------~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~ 90 (448)
+-.|+..+|.+|.|+|||.. +-.+...+.
T Consensus 159 vID~l~PIGkGQR~lIvgppGvGKTTL-aK~Ian~I~ 194 (416)
T PRK09376 159 IIDLIAPIGKGQRGLIVAPPKAGKTVL-LQNIANSIT 194 (416)
T ss_pred eeeeecccccCceEEEeCCCCCChhHH-HHHHHHHHH
Confidence 22468899999999999964 333444433
No 440
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=92.76 E-value=0.23 Score=46.59 Aligned_cols=63 Identities=22% Similarity=0.207 Sum_probs=39.5
Q ss_pred HHHHHHCCCCCCcHHHHhHHHHhhc-CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHH
Q 013176 39 LEVIAKLGFVEPTPIQAQGWPMALK-GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTREL 112 (448)
Q Consensus 39 ~~~~~~~~~~~~~~~Q~~~i~~~~~-~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L 112 (448)
.+.+...|+ +.+.+.+.+..+.+ +.++++.++||+|||.. +-+++..+.. ..+++++-.+.+|
T Consensus 154 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTl-l~al~~~i~~--------~~riv~iEd~~El 217 (340)
T TIGR03819 154 LDELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTTL-LSALLALVAP--------DERIVLVEDAAEL 217 (340)
T ss_pred HHHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHH-HHHHHccCCC--------CCcEEEECCccee
Confidence 344445555 45677777766555 46899999999999964 3333333221 3456777666665
No 441
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=92.67 E-value=0.83 Score=40.12 Aligned_cols=52 Identities=25% Similarity=0.259 Sum_probs=33.4
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhh
Q 013176 64 GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (448)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~ 124 (448)
+..+++.+++|+|||..++-.+...+.. +..++|+.. .+-.+|+.+.+..++
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~~--------g~~~~y~s~-e~~~~~l~~~~~~~~ 67 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLKN--------GEKAMYISL-EEREERILGYAKSKG 67 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC--------CCeEEEEEC-CCCHHHHHHHHHHcC
Confidence 4567888999999996544333333322 456777755 445677777777653
No 442
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=92.64 E-value=3.1 Score=34.64 Aligned_cols=52 Identities=17% Similarity=0.268 Sum_probs=30.2
Q ss_pred CCCccEEEEecccccccCCC--HHHHHHHHHHcCCCcceEEEeccCchHHHHHH
Q 013176 172 LRRVTYLVLDEADRMLDMGF--EPQIRKIVTQIRPDRQTLYWSATWPREVETLA 223 (448)
Q Consensus 172 ~~~~~~iIvDE~h~~~~~~~--~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~ 223 (448)
-..+++||+||+-...+.++ ...+..++..-++...+|+.--.+|+.+...+
T Consensus 94 ~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~A 147 (172)
T PF02572_consen 94 SGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEAA 147 (172)
T ss_dssp -TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH-
T ss_pred CCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHhC
Confidence 45689999999998777663 35566666655566666665555665554443
No 443
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=92.61 E-value=0.31 Score=43.87 Aligned_cols=83 Identities=19% Similarity=0.247 Sum_probs=45.4
Q ss_pred CCCCCcccccccCC-------CCHHHHHHHHHCCCCCCcHHHHhHHHHhhc-C---------C--cEEEEcCCCChHHHH
Q 013176 20 HDVPRPIRIFQEAN-------FPDYCLEVIAKLGFVEPTPIQAQGWPMALK-G---------R--DLIGIAETGSGKTLS 80 (448)
Q Consensus 20 ~~~~~p~~~~~~~~-------l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~~-~---------~--~~lv~~~tGsGKT~~ 80 (448)
.+.++|...|+.+. +..++.+...+ .+..+.++-+.+.. | + -.+|.||||+||+-.
T Consensus 29 a~~l~p~~~F~s~~e~~s~ggl~~~l~~~~~~-----~~~~~~~~~~~L~~dG~~~SLN~~~qP~I~~VYGPTG~GKSqL 103 (369)
T PF02456_consen 29 AIGLKPLKNFESFDELLSLGGLLNDLREIQRK-----VRKQMNEASPYLRPDGSCPSLNYGLQPFIGVVYGPTGSGKSQL 103 (369)
T ss_pred ccCCCcccccccHHHHhhhcchHHHHHHHHHH-----HHHHHHHHHHhcCcCCcccccccCCCceEEEEECCCCCCHHHH
Confidence 56667777777764 55555555443 12223333333333 1 1 246679999999952
Q ss_pred HHHHHHHHhhcCCCccCCCCceEEEEcCcHHHH
Q 013176 81 YLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELA 113 (448)
Q Consensus 81 ~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~ 113 (448)
+ ..+... ....+...+|++++|.+..+
T Consensus 104 -l----RNLis~-~lI~P~PETVfFItP~~~mI 130 (369)
T PF02456_consen 104 -L----RNLISC-QLIQPPPETVFFITPQKDMI 130 (369)
T ss_pred -H----HHhhhc-CcccCCCCceEEECCCCCCC
Confidence 2 222111 12223467899999976544
No 444
>PRK09087 hypothetical protein; Validated
Probab=92.58 E-value=0.57 Score=41.20 Aligned_cols=40 Identities=10% Similarity=0.086 Sum_probs=23.3
Q ss_pred cEEEEecccccccCCCHHHHHHHHHHcCCCcceEEEeccCch
Q 013176 176 TYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPR 217 (448)
Q Consensus 176 ~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~ 217 (448)
+++++|++|.+.. ....+..++..+......+++|++.++
T Consensus 89 ~~l~iDDi~~~~~--~~~~lf~l~n~~~~~g~~ilits~~~p 128 (226)
T PRK09087 89 GPVLIEDIDAGGF--DETGLFHLINSVRQAGTSLLMTSRLWP 128 (226)
T ss_pred CeEEEECCCCCCC--CHHHHHHHHHHHHhCCCeEEEECCCCh
Confidence 3799999997632 244555565555443344555555433
No 445
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=92.55 E-value=1.1 Score=42.61 Aligned_cols=20 Identities=30% Similarity=0.282 Sum_probs=16.9
Q ss_pred hhcCCcEEEEcCCCChHHHH
Q 013176 61 ALKGRDLIGIAETGSGKTLS 80 (448)
Q Consensus 61 ~~~~~~~lv~~~tGsGKT~~ 80 (448)
+-.|+.+++++|+|+|||..
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL 184 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVL 184 (415)
T ss_pred eCCCCEEEEECCCCCChhHH
Confidence 34678899999999999974
No 446
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=92.51 E-value=1.5 Score=42.94 Aligned_cols=18 Identities=22% Similarity=0.159 Sum_probs=14.8
Q ss_pred cEEEEcCCCChHHHHHHH
Q 013176 66 DLIGIAETGSGKTLSYLL 83 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~~~l 83 (448)
..++.||.|+|||.++..
T Consensus 41 a~Lf~Gp~G~GKtt~A~~ 58 (451)
T PRK06305 41 AYLFSGIRGTGKTTLARI 58 (451)
T ss_pred EEEEEcCCCCCHHHHHHH
Confidence 478899999999987544
No 447
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.46 E-value=0.1 Score=47.02 Aligned_cols=18 Identities=44% Similarity=0.536 Sum_probs=15.5
Q ss_pred CcEEEEcCCCChHHHHHH
Q 013176 65 RDLIGIAETGSGKTLSYL 82 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~ 82 (448)
.|+++.+|||||||+.+.
T Consensus 98 SNILLiGPTGsGKTlLAq 115 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQ 115 (408)
T ss_pred ccEEEECCCCCcHHHHHH
Confidence 589999999999998654
No 448
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=92.44 E-value=0.16 Score=50.32 Aligned_cols=49 Identities=29% Similarity=0.388 Sum_probs=38.4
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013176 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~ 123 (448)
.++++.||||||||..+++|.+... +.-++|.-|.-+|...+...+++.
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~~----------~~s~iV~D~KgEl~~~t~~~r~~~ 93 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLNY----------PGSMIVTDPKGELYEKTAGYRKKR 93 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHhc----------cCCEEEEECCCcHHHHHHHHHHHC
Confidence 4699999999999999988876542 224888889888888777766664
No 449
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=92.43 E-value=0.12 Score=49.69 Aligned_cols=47 Identities=26% Similarity=0.330 Sum_probs=36.3
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013176 66 DLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALK 122 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~ 122 (448)
++++.||||+|||.++++|-+..+ ...++|+-|.-++........+.
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~----------~~s~vv~D~Kge~~~~t~~~r~~ 47 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW----------PGSVVVLDPKGENFELTSEHRRA 47 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC----------CCCEEEEccchhHHHHHHHHHHH
Confidence 478999999999999887766542 33588899988888776666555
No 450
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=92.38 E-value=1.1 Score=47.21 Aligned_cols=18 Identities=28% Similarity=0.418 Sum_probs=15.4
Q ss_pred cCCcEEEEcCCCChHHHH
Q 013176 63 KGRDLIGIAETGSGKTLS 80 (448)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~ 80 (448)
..+.+++.||+|+|||..
T Consensus 211 ~~~giLL~GppGtGKT~l 228 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLL 228 (733)
T ss_pred CCceEEEECCCCCChHHH
Confidence 346899999999999975
No 451
>PRK05636 replicative DNA helicase; Provisional
Probab=92.37 E-value=0.99 Score=44.82 Aligned_cols=112 Identities=17% Similarity=0.095 Sum_probs=52.8
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhH
Q 013176 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQI 144 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (448)
.=+++.|.+|.|||.-++-.+...+.+. +..++|++. ..-..|+..++-... .++....+..+.-..+++
T Consensus 266 ~Liiiaarpg~GKT~~al~~a~~~a~~~-------g~~v~~fSl-EMs~~ql~~R~ls~~--s~v~~~~i~~g~l~~~e~ 335 (505)
T PRK05636 266 QMIIVAARPGVGKSTLALDFMRSASIKH-------NKASVIFSL-EMSKSEIVMRLLSAE--AEVRLSDMRGGKMDEDAW 335 (505)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHhC-------CCeEEEEEe-eCCHHHHHHHHHHHh--cCCCHHHHhcCCCCHHHH
Confidence 3456779999999965442222222221 345666633 333445554443321 122222222232233333
Q ss_pred HHHh------cCCcEEEE-----ccHHHHHHHHccccCCCCccEEEEecccccc
Q 013176 145 RDLR------RGVEIVIA-----TPGRLIDMLEAQHTNLRRVTYLVLDEADRML 187 (448)
Q Consensus 145 ~~~~------~~~~iiv~-----T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~ 187 (448)
.++. ....+.|. |.+.+.......+. ...+++||||=.|.+.
T Consensus 336 ~~~~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~-~~~~~lvvIDYLql~~ 388 (505)
T PRK05636 336 EKLVQRLGKIAQAPIFIDDSANLTMMEIRSKARRLKQ-KHDLKLIVVDYLQLMS 388 (505)
T ss_pred HHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHhcC
Confidence 3221 23445553 22333332222111 1347899999999875
No 452
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=92.34 E-value=0.77 Score=45.80 Aligned_cols=55 Identities=20% Similarity=0.276 Sum_probs=31.1
Q ss_pred CcccccccCCCCHHHHHHHHHC-C-CCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHH
Q 013176 24 RPIRIFQEANFPDYCLEVIAKL-G-FVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSY 81 (448)
Q Consensus 24 ~p~~~~~~~~l~~~l~~~~~~~-~-~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~ 81 (448)
.|..+|+++.-.+.+.+.+... . +..+..++.. .....+++++.+|+|+|||..+
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~---g~~~~~giLL~GppGtGKT~la 105 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKL---GAKIPKGVLLVGPPGTGKTLLA 105 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhc---CCCCCCcEEEECCCCCCHHHHH
Confidence 5567788876655555544331 0 1122222211 1122357999999999999753
No 453
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.31 E-value=1.1 Score=41.69 Aligned_cols=56 Identities=18% Similarity=0.338 Sum_probs=40.5
Q ss_pred CCCCccEEEEecccccccCC-CHHHHHHHHHHcCCCcceEEEeccCchHHHHHHHHH
Q 013176 171 NLRRVTYLVLDEADRMLDMG-FEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQF 226 (448)
Q Consensus 171 ~~~~~~~iIvDE~h~~~~~~-~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~ 226 (448)
...++++||+|-.-+.-... ....+..+...+.|+.-++.+-|+.....+..+..+
T Consensus 180 Kke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aF 236 (483)
T KOG0780|consen 180 KKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAF 236 (483)
T ss_pred HhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHH
Confidence 34568899999887765432 456677777888888888889999877666555543
No 454
>PRK09354 recA recombinase A; Provisional
Probab=92.27 E-value=0.46 Score=44.41 Aligned_cols=43 Identities=23% Similarity=0.132 Sum_probs=28.4
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHH
Q 013176 64 GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAV 114 (448)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~ 114 (448)
+.-+.+.+|+|+|||...+-.+...... +..++|+..-..+-.
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~~--------G~~~~yId~E~s~~~ 102 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQKA--------GGTAAFIDAEHALDP 102 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--------CCcEEEECCccchHH
Confidence 3467788999999997655444443322 566888876555543
No 455
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=92.25 E-value=0.37 Score=42.93 Aligned_cols=18 Identities=22% Similarity=0.200 Sum_probs=15.0
Q ss_pred CcEEEEcCCCChHHHHHH
Q 013176 65 RDLIGIAETGSGKTLSYL 82 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~ 82 (448)
.++++.+|+|.|||..+.
T Consensus 53 DHvLl~GPPGlGKTTLA~ 70 (332)
T COG2255 53 DHVLLFGPPGLGKTTLAH 70 (332)
T ss_pred CeEEeeCCCCCcHHHHHH
Confidence 479999999999997543
No 456
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=92.24 E-value=0.76 Score=48.31 Aligned_cols=18 Identities=28% Similarity=0.420 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCChHHHHH
Q 013176 64 GRDLIGIAETGSGKTLSY 81 (448)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~ 81 (448)
.+.+++.||+|+|||+.+
T Consensus 487 ~~giLL~GppGtGKT~la 504 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLA 504 (733)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 357899999999999753
No 457
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=92.24 E-value=0.19 Score=50.83 Aligned_cols=57 Identities=21% Similarity=0.168 Sum_probs=44.1
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEE
Q 013176 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIY 135 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~ 135 (448)
+++++.||||||||..+++|-+..+.. -++|+=|.-++...+....++. +.+|.++.
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~~~----------S~VV~DpKGEl~~~Ta~~R~~~----G~~V~vfd 215 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFWED----------SVVVHDIKLENYELTSGWREKQ----GQKVFVWE 215 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhCCC----------CEEEEeCcHHHHHHHHHHHHHC----CCeEEEEe
Confidence 478999999999999999998876433 3899999999988877777664 44554443
No 458
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=92.23 E-value=0.43 Score=40.57 Aligned_cols=31 Identities=32% Similarity=0.373 Sum_probs=24.6
Q ss_pred CcHHHHhHHHHhhc-CCcEEEEcCCCChHHHH
Q 013176 50 PTPIQAQGWPMALK-GRDLIGIAETGSGKTLS 80 (448)
Q Consensus 50 ~~~~Q~~~i~~~~~-~~~~lv~~~tGsGKT~~ 80 (448)
..+.|.+.+..... +..+++.+|||+|||..
T Consensus 10 ~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTl 41 (186)
T cd01130 10 FSPLQAAYLWLAVEARKNILISGGTGSGKTTL 41 (186)
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 56778777766554 57889999999999974
No 459
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=92.22 E-value=0.072 Score=53.82 Aligned_cols=75 Identities=25% Similarity=0.392 Sum_probs=59.4
Q ss_pred HHHHHHHHhhh-cCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhc---CCCCEEEEeccccCC
Q 013176 260 NRLIKLLKEVM-DGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRS---GRSPIMTATDVAARG 335 (448)
Q Consensus 260 ~~l~~~l~~~~-~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~---g~~~vLv~T~~~~~G 335 (448)
..|..++++.. .+.+++||..-+.....+...+...+ ....+.|..+..+|...+..|+. .....|.+|.+.+.|
T Consensus 618 ~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 618 TLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 33444444433 36799999999999999999998888 88899999999999999999983 356788899887654
No 460
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.18 E-value=0.96 Score=44.00 Aligned_cols=68 Identities=19% Similarity=0.166 Sum_probs=38.4
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHhHHH-------HhhcC-----CcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCC
Q 013176 32 ANFPDYCLEVIAKLGFVEPTPIQAQGWP-------MALKG-----RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGE 99 (448)
Q Consensus 32 ~~l~~~l~~~~~~~~~~~~~~~Q~~~i~-------~~~~~-----~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~ 99 (448)
++.+++-.+.+...|+-.-.+.=.+.+. .+... .++++.+|.|||||..+.-.++.. .
T Consensus 494 FG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~S----------~ 563 (744)
T KOG0741|consen 494 FGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIALSS----------D 563 (744)
T ss_pred cCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHHHHHhhc----------C
Confidence 5777777777776655433332222222 22211 268999999999995433222211 2
Q ss_pred CceEEEEcCc
Q 013176 100 GPIVLVLAPT 109 (448)
Q Consensus 100 ~~~vlil~P~ 109 (448)
-|.+=++.|.
T Consensus 564 FPFvKiiSpe 573 (744)
T KOG0741|consen 564 FPFVKIISPE 573 (744)
T ss_pred CCeEEEeChH
Confidence 5667777774
No 461
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=92.15 E-value=1 Score=45.49 Aligned_cols=64 Identities=23% Similarity=0.338 Sum_probs=37.6
Q ss_pred EcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCCCHHHHHHHHHHcC
Q 013176 135 YGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIR 203 (448)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~ 203 (448)
.||...+.+.+..+.. -|=+-|+++.+-+....... -++++||+|.|.....+.--..++..+.
T Consensus 383 LGGvrDEAEIRGHRRT--YIGamPGrIiQ~mkka~~~N---Pv~LLDEIDKm~ss~rGDPaSALLEVLD 446 (782)
T COG0466 383 LGGVRDEAEIRGHRRT--YIGAMPGKIIQGMKKAGVKN---PVFLLDEIDKMGSSFRGDPASALLEVLD 446 (782)
T ss_pred cCccccHHHhcccccc--ccccCChHHHHHHHHhCCcC---CeEEeechhhccCCCCCChHHHHHhhcC
Confidence 4455444444433322 23445889888877654432 3899999999987654444444444443
No 462
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=92.13 E-value=2.1 Score=45.71 Aligned_cols=30 Identities=20% Similarity=0.142 Sum_probs=21.2
Q ss_pred HHHhHHHHhh----c--CCcEEEEcCCCChHHHHHH
Q 013176 53 IQAQGWPMAL----K--GRDLIGIAETGSGKTLSYL 82 (448)
Q Consensus 53 ~Q~~~i~~~~----~--~~~~lv~~~tGsGKT~~~~ 82 (448)
.|...+..+. . ..+.+++||+|+|||..+-
T Consensus 191 Gr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~ 226 (852)
T TIGR03345 191 GRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVE 226 (852)
T ss_pred CCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHH
Confidence 3555555554 2 2589999999999997643
No 463
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=92.07 E-value=2.1 Score=35.87 Aligned_cols=53 Identities=17% Similarity=0.235 Sum_probs=35.5
Q ss_pred CCccEEEEecccccccCCC--HHHHHHHHHHcCCCcceEEEeccCchHHHHHHHH
Q 013176 173 RRVTYLVLDEADRMLDMGF--EPQIRKIVTQIRPDRQTLYWSATWPREVETLARQ 225 (448)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~~--~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~ 225 (448)
..+++||+||.-..+..++ ...+..++..-+....+|+..-..++.+.+.+..
T Consensus 121 ~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~ADl 175 (198)
T COG2109 121 GKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIELADL 175 (198)
T ss_pred CCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHHH
Confidence 3589999999998777663 3556666665556666665555566666655543
No 464
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=92.06 E-value=0.24 Score=52.31 Aligned_cols=54 Identities=15% Similarity=0.075 Sum_probs=35.9
Q ss_pred ccccccCCCCHHHHHHHHHCCCC-CCcHHHHhHHHHhhcCCcEEEEcCCCChHHHH
Q 013176 26 IRIFQEANFPDYCLEVIAKLGFV-EPTPIQAQGWPMALKGRDLIGIAETGSGKTLS 80 (448)
Q Consensus 26 ~~~~~~~~l~~~l~~~~~~~~~~-~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~ 80 (448)
...|+..+..+.++..|+.+-+. -++|-+.+- -.+..-+.++..+|.|+|||+.
T Consensus 261 ~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~-~~itpPrgvL~~GppGTGkTl~ 315 (1080)
T KOG0732|consen 261 SVGFDSVGGLENYINQLKEMVLLPLLYPEFFDN-FNITPPRGVLFHGPPGTGKTLM 315 (1080)
T ss_pred ccCccccccHHHHHHHHHHHHHhHhhhhhHhhh-cccCCCcceeecCCCCCchhHH
Confidence 46788888888888888876442 123322211 1233446799999999999975
No 465
>PF12846 AAA_10: AAA-like domain
Probab=92.01 E-value=0.28 Score=45.26 Aligned_cols=41 Identities=24% Similarity=0.420 Sum_probs=29.1
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHH
Q 013176 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELA 113 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~ 113 (448)
.++++.|+||+|||.... .++..+... +..++++=|..+..
T Consensus 2 ~h~~i~G~tGsGKT~~~~-~l~~~~~~~-------g~~~~i~D~~g~~~ 42 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLK-NLLEQLIRR-------GPRVVIFDPKGDYS 42 (304)
T ss_pred CeEEEECCCCCcHHHHHH-HHHHHHHHc-------CCCEEEEcCCchHH
Confidence 578999999999997755 444444442 56688887765444
No 466
>PRK06321 replicative DNA helicase; Provisional
Probab=91.99 E-value=2.2 Score=42.06 Aligned_cols=112 Identities=15% Similarity=0.093 Sum_probs=56.0
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhH
Q 013176 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQI 144 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (448)
.=+++.|.+|.|||.- .+-+...+... .+..++|++. ..-..|+..++-... .++....+..+.-...++
T Consensus 227 ~LiiiaarPgmGKTaf-al~ia~~~a~~------~g~~v~~fSL-EMs~~ql~~Rlla~~--s~v~~~~i~~~~l~~~e~ 296 (472)
T PRK06321 227 NLMILAARPAMGKTAL-ALNIAENFCFQ------NRLPVGIFSL-EMTVDQLIHRIICSR--SEVESKKISVGDLSGRDF 296 (472)
T ss_pred cEEEEEeCCCCChHHH-HHHHHHHHHHh------cCCeEEEEec-cCCHHHHHHHHHHhh--cCCCHHHhhcCCCCHHHH
Confidence 3456679999999964 44444443211 1445666644 334555555554322 122222222222222333
Q ss_pred HHH------hcCCcEEEE-----ccHHHHHHHHccccCCCCccEEEEecccccc
Q 013176 145 RDL------RRGVEIVIA-----TPGRLIDMLEAQHTNLRRVTYLVLDEADRML 187 (448)
Q Consensus 145 ~~~------~~~~~iiv~-----T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~ 187 (448)
.++ .....+.|- |.+.+......... -..+++||||=.|.+.
T Consensus 297 ~~~~~a~~~l~~~~~~idd~~~~ti~~i~~~~r~~~~-~~~~~lvvIDyLql~~ 349 (472)
T PRK06321 297 QRIVSVVNEMQEHTLLIDDQPGLKITDLRARARRMKE-SYDIQFLIIDYLQLLS 349 (472)
T ss_pred HHHHHHHHHHHcCCEEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHHcC
Confidence 221 123456664 34445444333222 2347899999999875
No 467
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=91.97 E-value=1.1 Score=43.99 Aligned_cols=51 Identities=22% Similarity=0.255 Sum_probs=32.6
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013176 64 GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (448)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~ 123 (448)
+.-+++.+++|+|||...+ .++..+... +.+++|+.. .+-..|+.....++
T Consensus 94 GsvilI~G~pGsGKTTL~l-q~a~~~a~~-------g~kvlYvs~-EEs~~qi~~ra~rl 144 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLL-QVACQLAKN-------QMKVLYVSG-EESLQQIKMRAIRL 144 (454)
T ss_pred CeEEEEEcCCCCCHHHHHH-HHHHHHHhc-------CCcEEEEEC-cCCHHHHHHHHHHc
Confidence 3467888999999997544 333333331 346888876 44556776666654
No 468
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=91.91 E-value=0.5 Score=44.29 Aligned_cols=18 Identities=22% Similarity=0.148 Sum_probs=15.2
Q ss_pred CcEEEEcCCCChHHHHHH
Q 013176 65 RDLIGIAETGSGKTLSYL 82 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~ 82 (448)
.++++.||+|+|||..+.
T Consensus 52 ~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CcEEEECCCCccHHHHHH
Confidence 478999999999997644
No 469
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=91.73 E-value=0.95 Score=36.81 Aligned_cols=116 Identities=16% Similarity=0.147 Sum_probs=57.0
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCce-EEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHh
Q 013176 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPI-VLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQ 143 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~-vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (448)
..+++.+++|+|||.. +.-+...+... +.+ .=|++| +++.-+...+++++.+..+....-.
T Consensus 6 mki~ITG~PGvGKtTl-~~ki~e~L~~~-------g~kvgGf~t~----------EVR~gGkR~GF~Ivdl~tg~~~~la 67 (179)
T COG1618 6 MKIFITGRPGVGKTTL-VLKIAEKLREK-------GYKVGGFITP----------EVREGGKRIGFKIVDLATGEEGILA 67 (179)
T ss_pred eEEEEeCCCCccHHHH-HHHHHHHHHhc-------CceeeeEEee----------eeecCCeEeeeEEEEccCCceEEEE
Confidence 3688999999999975 55555555553 222 234444 3445455567777776644322111
Q ss_pred HHHHhcCC--cEEEEccHHHHHHHHcc-ccCCCCccEEEEecccccccCC--CHHHHHHHH
Q 013176 144 IRDLRRGV--EIVIATPGRLIDMLEAQ-HTNLRRVTYLVLDEADRMLDMG--FEPQIRKIV 199 (448)
Q Consensus 144 ~~~~~~~~--~iiv~T~~~l~~~~~~~-~~~~~~~~~iIvDE~h~~~~~~--~~~~~~~~~ 199 (448)
.... ..+ .=+....+.|.+..... ...+..-|++|+||+--|--.. |...+..++
T Consensus 68 ~~~~-~~~rvGkY~V~v~~le~i~~~al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl 127 (179)
T COG1618 68 RVGF-SRPRVGKYGVNVEGLEEIAIPALRRALEEADVIIIDEIGPMELKSKKFREAVEEVL 127 (179)
T ss_pred EcCC-CCcccceEEeeHHHHHHHhHHHHHHHhhcCCEEEEecccchhhccHHHHHHHHHHh
Confidence 0000 110 11122222232221111 0112235899999999765432 455555544
No 470
>PHA00012 I assembly protein
Probab=91.69 E-value=6.9 Score=36.08 Aligned_cols=25 Identities=20% Similarity=0.187 Sum_probs=19.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhhc
Q 013176 67 LIGIAETGSGKTLSYLLPAFVHVSA 91 (448)
Q Consensus 67 ~lv~~~tGsGKT~~~~l~~l~~~~~ 91 (448)
.++.+-.|+|||+.++..+...+.+
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L~~ 28 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKLVK 28 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHc
Confidence 4788999999999887766665554
No 471
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=91.69 E-value=0.17 Score=45.62 Aligned_cols=29 Identities=17% Similarity=0.173 Sum_probs=21.2
Q ss_pred HHHHHHHHHCCCCCCcHHHHhHHHHhhcC
Q 013176 36 DYCLEVIAKLGFVEPTPIQAQGWPMALKG 64 (448)
Q Consensus 36 ~~l~~~~~~~~~~~~~~~Q~~~i~~~~~~ 64 (448)
-.+++.|++++|.-+-.-|...-.++.++
T Consensus 6 ~~lvdslk~l~~qg~~~k~~~lsral~ag 34 (465)
T KOG3973|consen 6 LYLVDSLKALSFQGHCQKQENLSRALMAG 34 (465)
T ss_pred HHHHHHHHHhccCCcccchhhHHHHHHcC
Confidence 46788899999977777776666666554
No 472
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=91.67 E-value=1.5 Score=39.70 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=17.9
Q ss_pred hHHHHhhcC---CcEEEEcCCCChHHHH
Q 013176 56 QGWPMALKG---RDLIGIAETGSGKTLS 80 (448)
Q Consensus 56 ~~i~~~~~~---~~~lv~~~tGsGKT~~ 80 (448)
..++.+.+. +++++.+|+|+|||..
T Consensus 100 ~~l~~l~~~~~~~~~~i~g~~g~GKttl 127 (270)
T TIGR02858 100 KLLPYLVRNNRVLNTLIISPPQCGKTTL 127 (270)
T ss_pred HHHHHHHhCCCeeEEEEEcCCCCCHHHH
Confidence 334444433 5789999999999963
No 473
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=91.62 E-value=9.3 Score=35.68 Aligned_cols=56 Identities=18% Similarity=0.237 Sum_probs=38.5
Q ss_pred cCCcEEEEecchhHHHHHHHHHHhCCCCeEEE-----cCCCCHHHHHHHHHHHhcCCCCEEEEe
Q 013176 271 DGSRILIFTETKKGCDQVTRQLRMDGWPALSI-----HGDKNQSERDWVLAEFRSGRSPIMTAT 329 (448)
Q Consensus 271 ~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~-----~~~~~~~~r~~~~~~f~~g~~~vLv~T 329 (448)
.+.+++.|| -+..-+.+.+.|++.|..+... |...+..+-..+....+... .||+|
T Consensus 226 ~~~~v~a~s-GIg~P~~F~~~L~~~G~~~~~~~~f~DHh~yt~~dl~~l~~~a~~~~--~iltT 286 (326)
T PF02606_consen 226 KGKPVLAFS-GIGNPERFFDTLESLGIEVVGTLAFPDHHRYTEQDLEKLEAEAKAAG--IILTT 286 (326)
T ss_pred cCCeeEEEE-EcCChHHHHHHHHHcCCeEEEeeECCCCCCCCHHHHHHHHHhhcccc--eEEec
Confidence 466776666 4555677778888887766522 56777777777777665444 78888
No 474
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=91.62 E-value=0.65 Score=46.76 Aligned_cols=18 Identities=33% Similarity=0.167 Sum_probs=14.6
Q ss_pred cEEEEcCCCChHHHHHHH
Q 013176 66 DLIGIAETGSGKTLSYLL 83 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~~~l 83 (448)
..++.||.|+|||.++..
T Consensus 40 ayLf~Gp~G~GKTt~Ar~ 57 (563)
T PRK06647 40 AYIFSGPRGVGKTSSARA 57 (563)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 378999999999986543
No 475
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=91.60 E-value=0.35 Score=48.76 Aligned_cols=20 Identities=25% Similarity=0.336 Sum_probs=16.6
Q ss_pred hhcCCcEEEEcCCCChHHHH
Q 013176 61 ALKGRDLIGIAETGSGKTLS 80 (448)
Q Consensus 61 ~~~~~~~lv~~~tGsGKT~~ 80 (448)
+.+|+.+.++||+|+|||..
T Consensus 358 i~~G~~vaIvG~SGsGKSTL 377 (529)
T TIGR02868 358 LPPGERVAILGPSGSGKSTL 377 (529)
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 34577899999999999963
No 476
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=91.52 E-value=1.2 Score=37.88 Aligned_cols=62 Identities=23% Similarity=0.167 Sum_probs=33.7
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCc--cCCCCceEEEEcCcHHHHHHHHHHHHHhhc
Q 013176 63 KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRL--VQGEGPIVLVLAPTRELAVQIQEEALKFGS 125 (448)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~--~~~~~~~vlil~P~~~L~~q~~~~~~~~~~ 125 (448)
.+.-+++.|++|+|||...+-.+...+...... ....+.+++++..-.. ..++.+++.....
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~~ 94 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRALLQ 94 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHHHHT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHHHhc
Confidence 455688889999999976444344333221111 0113567888866443 6677777777653
No 477
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=91.52 E-value=0.6 Score=47.54 Aligned_cols=34 Identities=32% Similarity=0.428 Sum_probs=21.9
Q ss_pred CCCccEEEEecccccccCCCHHHHHHHHHHcCCC
Q 013176 172 LRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPD 205 (448)
Q Consensus 172 ~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~ 205 (448)
+.+..++|+||+..-+|......+...+..+.++
T Consensus 481 l~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~ 514 (567)
T COG1132 481 LRNPPILILDEATSALDTETEALIQDALKKLLKG 514 (567)
T ss_pred hcCCCEEEEeccccccCHHhHHHHHHHHHHHhcC
Confidence 4455788888888777766566666655544433
No 478
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=91.42 E-value=0.17 Score=51.87 Aligned_cols=44 Identities=9% Similarity=-0.054 Sum_probs=35.1
Q ss_pred CCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcC
Q 013176 49 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQ 92 (448)
Q Consensus 49 ~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~ 92 (448)
..+.+-++.++.+.++.+.+....+++|||....+.++..+.++
T Consensus 406 k~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~e 449 (1282)
T KOG0921|consen 406 KSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANE 449 (1282)
T ss_pred chhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHh
Confidence 34677788889999888888889999999988777777776543
No 479
>PRK05595 replicative DNA helicase; Provisional
Probab=91.29 E-value=0.65 Score=45.56 Aligned_cols=113 Identities=13% Similarity=0.090 Sum_probs=55.0
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHH-hhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchH
Q 013176 64 GRDLIGIAETGSGKTLSYLLPAFVH-VSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGP 142 (448)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~l~~l~~-~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (448)
+.-+++.|.||.|||..+ +.+... ...+ +..++++.. ..-..|+..++-.... ++....+..+.-...
T Consensus 201 g~liviaarpg~GKT~~a-l~ia~~~a~~~-------g~~vl~fSl-Ems~~~l~~R~~a~~~--~v~~~~~~~~~l~~~ 269 (444)
T PRK05595 201 GDMILIAARPSMGKTTFA-LNIAEYAALRE-------GKSVAIFSL-EMSKEQLAYKLLCSEA--NVDMLRLRTGNLEDK 269 (444)
T ss_pred CcEEEEEecCCCChHHHH-HHHHHHHHHHc-------CCcEEEEec-CCCHHHHHHHHHHHhc--CCCHHHHhcCCCCHH
Confidence 345667799999999654 434333 2222 455777755 3344555555443322 222221222222222
Q ss_pred hHHHHh------cCCcEEEE-----ccHHHHHHHHccccCCCCccEEEEeccccccc
Q 013176 143 QIRDLR------RGVEIVIA-----TPGRLIDMLEAQHTNLRRVTYLVLDEADRMLD 188 (448)
Q Consensus 143 ~~~~~~------~~~~iiv~-----T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~ 188 (448)
++..+. ...++.|- |++.+......... -..+++||||=.|.+..
T Consensus 270 e~~~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~-~~~~~~vvIDylql~~~ 325 (444)
T PRK05595 270 DWENIARASGPLAAAKIFIDDTAGVSVMEMRSKCRRLKI-EHGIDMILIDYLQLMSG 325 (444)
T ss_pred HHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH-hcCCCEEEEeHHHhccC
Confidence 222221 12344443 23334333332211 13488999999998863
No 480
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=91.27 E-value=2.8 Score=38.90 Aligned_cols=40 Identities=10% Similarity=0.196 Sum_probs=25.4
Q ss_pred CCccEEEEecccccccCCCHHHHHHHHHHcCCCcceEEEecc
Q 013176 173 RRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSAT 214 (448)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT 214 (448)
...+++|||++|.|.... .+.+.+++...+ +..++++|..
T Consensus 123 ~~~kVvII~~ae~m~~~a-aNaLLK~LEEPp-~~~fILi~~~ 162 (314)
T PRK07399 123 APRKVVVIEDAETMNEAA-ANALLKTLEEPG-NGTLILIAPS 162 (314)
T ss_pred CCceEEEEEchhhcCHHH-HHHHHHHHhCCC-CCeEEEEECC
Confidence 467899999999985543 445555665544 5544444443
No 481
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=91.22 E-value=0.94 Score=46.62 Aligned_cols=18 Identities=22% Similarity=0.207 Sum_probs=14.6
Q ss_pred cEEEEcCCCChHHHHHHH
Q 013176 66 DLIGIAETGSGKTLSYLL 83 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~~~l 83 (448)
..|+.||.|+|||.++..
T Consensus 42 AYLF~GP~GtGKTt~Ari 59 (725)
T PRK07133 42 AYLFSGPRGTGKTSVAKI 59 (725)
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 368899999999987544
No 482
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=91.22 E-value=0.63 Score=48.31 Aligned_cols=71 Identities=23% Similarity=0.203 Sum_probs=54.6
Q ss_pred CCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhc
Q 013176 49 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGS 125 (448)
Q Consensus 49 ~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~ 125 (448)
.+++-|++++... ...++|.+..|||||.+..--+.+.+..... ....++.++=|+-.|.++.+++.++..
T Consensus 2 ~Ln~~Q~~av~~~--~gp~lV~AGaGsGKT~vlt~Ria~li~~~~v----~p~~Il~vTFTnkAA~em~~Rl~~~~~ 72 (655)
T COG0210 2 KLNPEQREAVLHP--DGPLLVLAGAGSGKTRVLTERIAYLIAAGGV----DPEQILAITFTNKAAAEMRERLLKLLG 72 (655)
T ss_pred CCCHHHHHHHhcC--CCCeEEEECCCCCchhhHHHHHHHHHHcCCc----ChHHeeeeechHHHHHHHHHHHHHHhC
Confidence 5789999998886 5578899999999999866666655554322 133488888888888999999988765
No 483
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=91.20 E-value=0.83 Score=38.13 Aligned_cols=47 Identities=17% Similarity=0.116 Sum_probs=28.2
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013176 66 DLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~ 123 (448)
.+++.+++|||||..+...+ ... +..++++......-.++.+++...
T Consensus 3 ~ili~G~~~sGKS~~a~~l~-~~~----------~~~~~~iat~~~~~~e~~~ri~~h 49 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLA-AQS----------GLQVLYIATAQPFDDEMAARIAHH 49 (170)
T ss_pred EEEEECCCCccHHHHHHHHH-HHc----------CCCcEeCcCCCCChHHHHHHHHHH
Confidence 47889999999997544322 221 223566665555555555665543
No 484
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.18 E-value=1.4 Score=43.65 Aligned_cols=60 Identities=17% Similarity=0.312 Sum_probs=54.7
Q ss_pred cCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEec
Q 013176 271 DGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD 330 (448)
Q Consensus 271 ~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~ 330 (448)
.++.+||++|+++-+....+.|+..++.+..+++..+..++..++.....++.+++++|+
T Consensus 50 ~~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TP 109 (470)
T TIGR00614 50 SDGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTP 109 (470)
T ss_pred cCCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 456799999999999999999999999999999999999999999999999999999994
No 485
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=91.17 E-value=0.28 Score=44.58 Aligned_cols=52 Identities=21% Similarity=0.176 Sum_probs=32.1
Q ss_pred HHHhHHHHh-hcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHH
Q 013176 53 IQAQGWPMA-LKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTREL 112 (448)
Q Consensus 53 ~Q~~~i~~~-~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L 112 (448)
...+.+... ..+.++++.|+||||||.. +.+++..+... ..+++++-.+.++
T Consensus 115 ~~~~~l~~~v~~~~~ili~G~tGSGKTT~-l~all~~i~~~-------~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 115 EIAEFLRSAVRGRGNILISGPTGSGKTTL-LNALLEEIPPE-------DERIVTIEDPPEL 167 (270)
T ss_dssp HHHHHHHHCHHTTEEEEEEESTTSSHHHH-HHHHHHHCHTT-------TSEEEEEESSS-S
T ss_pred HHHHHHhhccccceEEEEECCCccccchH-HHHHhhhcccc-------ccceEEeccccce
Confidence 334444433 3456899999999999965 45555554442 2467777655554
No 486
>COG1485 Predicted ATPase [General function prediction only]
Probab=91.12 E-value=2.5 Score=39.10 Aligned_cols=109 Identities=15% Similarity=0.172 Sum_probs=61.4
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhH
Q 013176 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQI 144 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (448)
+.+.++|+.|.|||+ ++-++.....-.+ + .-++...-+.++.+++..+... .
T Consensus 66 ~GlYl~GgVGrGKT~--LMD~Fy~~lp~~~-----k----~R~HFh~FM~~vH~~l~~l~g~-----------~------ 117 (367)
T COG1485 66 RGLYLWGGVGRGKTM--LMDLFYESLPGER-----K----RRLHFHRFMARVHQRLHTLQGQ-----------T------ 117 (367)
T ss_pred ceEEEECCCCccHHH--HHHHHHhhCCccc-----c----ccccHHHHHHHHHHHHHHHcCC-----------C------
Confidence 578999999999997 4444443222111 1 2235566777777777775311 1
Q ss_pred HHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCCCHHHHHHHHH-HcCCCcceEEEeccCchHH
Q 013176 145 RDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVT-QIRPDRQTLYWSATWPREV 219 (448)
Q Consensus 145 ~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~-~~~~~~~~v~~SAT~~~~~ 219 (448)
+.+-.. ..++ ..+..+++|||.| +.+.+-.-.+..+++ .+.....++..|-|.|.++
T Consensus 118 -------dpl~~i---A~~~-------~~~~~vLCfDEF~-VtDI~DAMiL~rL~~~Lf~~GV~lvaTSN~~P~~L 175 (367)
T COG1485 118 -------DPLPPI---ADEL-------AAETRVLCFDEFE-VTDIADAMILGRLLEALFARGVVLVATSNTAPDNL 175 (367)
T ss_pred -------CccHHH---HHHH-------HhcCCEEEeeeee-ecChHHHHHHHHHHHHHHHCCcEEEEeCCCChHHh
Confidence 111000 0011 2346799999999 455442223333333 3456778888888887654
No 487
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=91.06 E-value=0.39 Score=51.27 Aligned_cols=96 Identities=16% Similarity=0.164 Sum_probs=69.9
Q ss_pred CCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCC-EEEEeccccCCCCCCCccEEEEcCCC
Q 013176 272 GSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSP-IMTATDVAARGLDVKDIKCVVNYDFP 350 (448)
Q Consensus 272 ~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~-vLv~T~~~~~Gidi~~~~~Vi~~~~p 350 (448)
..++|||+.-...-..+...+...++....-.+ .++....+..|++ ++ +|+-++..+-|+|+-+..||+..++-
T Consensus 1221 qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~---t~d~~dc~~~fk~--I~clll~~~~~~~GLNL~eA~Hvfl~ePi 1295 (1394)
T KOG0298|consen 1221 QEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGE---TEDFDDCIICFKS--IDCLLLFVSKGSKGLNLIEATHVFLVEPI 1295 (1394)
T ss_pred CceEEEEEehHHHHHHHHHHHHhhhhHhhhccC---Ccchhhhhhhccc--ceEEEEEeccCcccccHHhhhhhheeccc
Confidence 458999988777666666666544443322222 2334456666764 44 55566778899999999999999999
Q ss_pred CChhhhhhcccccCCCCCCceE
Q 013176 351 TSLEDYVHRIGRTGRAGARGTA 372 (448)
Q Consensus 351 ~s~~~~~Q~~GR~~R~g~~g~~ 372 (448)
.++..-.|.+||+.|.|++...
T Consensus 1296 LN~~~E~QAigRvhRiGQ~~pT 1317 (1394)
T KOG0298|consen 1296 LNPGDEAQAIGRVHRIGQKRPT 1317 (1394)
T ss_pred cCchHHHhhhhhhhhcccccch
Confidence 9999999999999999987654
No 488
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=91.05 E-value=1.4 Score=42.89 Aligned_cols=44 Identities=11% Similarity=0.162 Sum_probs=27.5
Q ss_pred CccEEEEecccccccCC-------CHHHHHHHHHHc---CCCcceEEEeccCch
Q 013176 174 RVTYLVLDEADRMLDMG-------FEPQIRKIVTQI---RPDRQTLYWSATWPR 217 (448)
Q Consensus 174 ~~~~iIvDE~h~~~~~~-------~~~~~~~~~~~~---~~~~~~v~~SAT~~~ 217 (448)
...+|+|||+|.+...- ....+..++..+ .++.-+|.+.||--+
T Consensus 396 APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfp 449 (752)
T KOG0734|consen 396 APCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFP 449 (752)
T ss_pred CCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCCh
Confidence 35689999999876532 122333444333 456678999999433
No 489
>COG4907 Predicted membrane protein [Function unknown]
Probab=91.03 E-value=0.2 Score=47.11 Aligned_cols=10 Identities=10% Similarity=0.361 Sum_probs=3.8
Q ss_pred ccEEEEcCCC
Q 013176 341 IKCVVNYDFP 350 (448)
Q Consensus 341 ~~~Vi~~~~p 350 (448)
+..+.++..|
T Consensus 452 v~~L~iffV~ 461 (595)
T COG4907 452 VNTLFIFFVP 461 (595)
T ss_pred cceeeehhhh
Confidence 3333333333
No 490
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=90.98 E-value=2.3 Score=38.89 Aligned_cols=27 Identities=15% Similarity=0.273 Sum_probs=22.3
Q ss_pred cchhHHHHHHHHHHhCCCCeEEEcCCCC
Q 013176 280 ETKKGCDQVTRQLRMDGWPALSIHGDKN 307 (448)
Q Consensus 280 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 307 (448)
.++..|+.+++.|+ .++.+.+.|-++.
T Consensus 258 RSV~~~e~l~~~l~-~~~~v~~~Hrd~~ 284 (288)
T PRK05416 258 RSVAIAERLAERLS-KGYNVQVRHRDLE 284 (288)
T ss_pred cHHHHHHHHHHHHh-CCCcEEEEeCccc
Confidence 56788999999994 5788988888875
No 491
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.97 E-value=0.92 Score=44.89 Aligned_cols=17 Identities=29% Similarity=0.266 Sum_probs=13.8
Q ss_pred EEEEcCCCChHHHHHHH
Q 013176 67 LIGIAETGSGKTLSYLL 83 (448)
Q Consensus 67 ~lv~~~tGsGKT~~~~l 83 (448)
.++.||.|+|||.++.+
T Consensus 41 yLf~Gp~G~GKTtlAr~ 57 (486)
T PRK14953 41 YIFAGPRGTGKTTIARI 57 (486)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 57899999999976554
No 492
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=90.96 E-value=1.1 Score=42.02 Aligned_cols=41 Identities=10% Similarity=0.184 Sum_probs=25.0
Q ss_pred CCCccEEEEecccccccCCCHHHHHHHHHHcCCCcceEEEec
Q 013176 172 LRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSA 213 (448)
Q Consensus 172 ~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~SA 213 (448)
.....++||||+|.+.... .+.+.++++.-++...+++.|.
T Consensus 108 ~~~~kvviI~~a~~~~~~a-~NaLLK~LEEPp~~~~~Il~t~ 148 (329)
T PRK08058 108 ESNKKVYIIEHADKMTASA-ANSLLKFLEEPSGGTTAILLTE 148 (329)
T ss_pred ccCceEEEeehHhhhCHHH-HHHHHHHhcCCCCCceEEEEeC
Confidence 3456899999999985543 3445555555444455555443
No 493
>PRK14701 reverse gyrase; Provisional
Probab=90.96 E-value=1.1 Score=50.88 Aligned_cols=61 Identities=16% Similarity=0.198 Sum_probs=53.4
Q ss_pred cCCcEEEEecchhHHHHHHHHHHhC------CCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEecc
Q 013176 271 DGSRILIFTETKKGCDQVTRQLRMD------GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDV 331 (448)
Q Consensus 271 ~~~k~lVf~~~~~~~~~l~~~L~~~------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~ 331 (448)
.+.+++|++||++-+.++++.|+.. +..+..+||+++..++.+.++.+++|+.+|||+|+-
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 4668999999999999999988763 456788999999999999999999999999999954
No 494
>PHA00350 putative assembly protein
Probab=90.90 E-value=1.4 Score=41.96 Aligned_cols=23 Identities=13% Similarity=0.121 Sum_probs=16.6
Q ss_pred EEEEcCCCChHHHHHHH-HHHHHh
Q 013176 67 LIGIAETGSGKTLSYLL-PAFVHV 89 (448)
Q Consensus 67 ~lv~~~tGsGKT~~~~l-~~l~~~ 89 (448)
.++.+..|||||+.++- .++..+
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~pal 27 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPAL 27 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHH
Confidence 47889999999987764 244343
No 495
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=90.78 E-value=0.51 Score=42.63 Aligned_cols=27 Identities=19% Similarity=0.151 Sum_probs=21.4
Q ss_pred hHHHHhhcCCcEEEEcCCCChHHHHHH
Q 013176 56 QGWPMALKGRDLIGIAETGSGKTLSYL 82 (448)
Q Consensus 56 ~~i~~~~~~~~~lv~~~tGsGKT~~~~ 82 (448)
+++..+..+.++++.||+|+|||..+.
T Consensus 13 ~~l~~l~~g~~vLL~G~~GtGKT~lA~ 39 (262)
T TIGR02640 13 RALRYLKSGYPVHLRGPAGTGKTTLAM 39 (262)
T ss_pred HHHHHHhcCCeEEEEcCCCCCHHHHHH
Confidence 444556677899999999999998754
No 496
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=90.64 E-value=2.3 Score=37.76 Aligned_cols=58 Identities=17% Similarity=0.111 Sum_probs=32.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhhcCCCc----cCCCCceEEEEcCcHHHHHHHHHHHHHhhc
Q 013176 67 LIGIAETGSGKTLSYLLPAFVHVSAQPRL----VQGEGPIVLVLAPTRELAVQIQEEALKFGS 125 (448)
Q Consensus 67 ~lv~~~tGsGKT~~~~l~~l~~~~~~~~~----~~~~~~~vlil~P~~~L~~q~~~~~~~~~~ 125 (448)
.++.+|.|+|||+.++-.+++.....+.. ....+.+|+|+.- ..=..++.+++..+..
T Consensus 4 ~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~-Ed~~~~i~~Rl~~i~~ 65 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSA-EDPREEIHRRLEAILQ 65 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEEC-CCCHHHHHHHHHHHHh
Confidence 57899999999987665544433222111 1123567888873 2222344555555443
No 497
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=90.63 E-value=0.41 Score=40.33 Aligned_cols=41 Identities=20% Similarity=0.330 Sum_probs=26.8
Q ss_pred CCccEEEEecccccccCCCHHHHHHHHHHcCCC-cceEEEec
Q 013176 173 RRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPD-RQTLYWSA 213 (448)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~-~~~v~~SA 213 (448)
.+.+++++||...-++......+..++..+... ..+++.|-
T Consensus 115 ~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH 156 (178)
T cd03239 115 KPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITL 156 (178)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 567899999999888766555555555554333 45555444
No 498
>PRK12608 transcription termination factor Rho; Provisional
Probab=90.62 E-value=1.6 Score=41.15 Aligned_cols=39 Identities=23% Similarity=0.221 Sum_probs=26.1
Q ss_pred HHHHhHHHHhh---cCCcEEEEcCCCChHHHHHHHHHHHHhhc
Q 013176 52 PIQAQGWPMAL---KGRDLIGIAETGSGKTLSYLLPAFVHVSA 91 (448)
Q Consensus 52 ~~Q~~~i~~~~---~~~~~lv~~~tGsGKT~~~~l~~l~~~~~ 91 (448)
+.-.++++.+. .|++.+|.+|.|+|||.. +..++..+..
T Consensus 118 ~~~~RvID~l~PiGkGQR~LIvG~pGtGKTTL-l~~la~~i~~ 159 (380)
T PRK12608 118 DLSMRVVDLVAPIGKGQRGLIVAPPRAGKTVL-LQQIAAAVAA 159 (380)
T ss_pred chhHhhhhheeecCCCceEEEECCCCCCHHHH-HHHHHHHHHh
Confidence 34445666655 578999999999999975 3333444433
No 499
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=90.48 E-value=1.2 Score=39.07 Aligned_cols=23 Identities=26% Similarity=0.254 Sum_probs=16.6
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHH
Q 013176 65 RDLIGIAETGSGKTLSYLLPAFVH 88 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~l~~l~~ 88 (448)
+.+++.||-|+|||.. +-.++..
T Consensus 21 ~~~~l~G~rg~GKTsL-l~~~~~~ 43 (234)
T PF01637_consen 21 QHILLYGPRGSGKTSL-LKEFINE 43 (234)
T ss_dssp SEEEEEESTTSSHHHH-HHHHHHH
T ss_pred cEEEEEcCCcCCHHHH-HHHHHHH
Confidence 5788889999999974 3334433
No 500
>PRK09165 replicative DNA helicase; Provisional
Probab=90.39 E-value=3.1 Score=41.43 Aligned_cols=121 Identities=20% Similarity=0.109 Sum_probs=58.8
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCc-------cCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEc
Q 013176 64 GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRL-------VQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYG 136 (448)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~-------~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~ 136 (448)
+.-+++.|.||.|||..++-.+.+........ ....+..++|++. ..-..|+..++-.... ++....+..
T Consensus 217 g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSl-EMs~~ql~~R~la~~s--~v~~~~i~~ 293 (497)
T PRK09165 217 SDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSL-EMSAEQLATRILSEQS--EISSSKIRR 293 (497)
T ss_pred CceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeC-cCCHHHHHHHHHHHhc--CCCHHHHhc
Confidence 34567789999999965443333332221100 0012456777744 4455666666544322 222212222
Q ss_pred CCCchHhHHHHh------cCCcEEEE-----ccHHHHHHHHccccCCCCccEEEEeccccccc
Q 013176 137 GAPKGPQIRDLR------RGVEIVIA-----TPGRLIDMLEAQHTNLRRVTYLVLDEADRMLD 188 (448)
Q Consensus 137 ~~~~~~~~~~~~------~~~~iiv~-----T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~ 188 (448)
+.-...++..+. ...++.|- |++.+...+.+... -..+++||||=.|.+..
T Consensus 294 ~~l~~~e~~~l~~a~~~l~~~~l~I~d~~~~ti~~i~~~ir~l~~-~~~~~lvvIDyLqli~~ 355 (497)
T PRK09165 294 GKISEEDFEKLVDASQELQKLPLYIDDTPALSISQLRARARRLKR-QHGLDLLVVDYLQLIRG 355 (497)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHhccC
Confidence 222223332221 23345554 34445444432221 13478999999997753
Done!