Query 013176
Match_columns 448
No_of_seqs 220 out of 2398
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 05:37:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013176.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013176hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 1.1E-64 3.7E-69 492.1 46.2 390 12-404 41-433 (434)
2 2i4i_A ATP-dependent RNA helic 100.0 6.6E-61 2.2E-65 465.6 44.7 394 14-408 2-412 (417)
3 2j0s_A ATP-dependent RNA helic 100.0 6.6E-58 2.2E-62 443.4 36.6 373 19-398 29-402 (410)
4 1s2m_A Putative ATP-dependent 100.0 1.7E-56 5.9E-61 432.0 38.3 370 23-400 17-386 (400)
5 3eiq_A Eukaryotic initiation f 100.0 5.1E-57 1.7E-61 437.8 33.3 380 19-404 32-412 (414)
6 1xti_A Probable ATP-dependent 100.0 1.5E-55 5E-60 424.3 39.8 360 27-392 8-371 (391)
7 1hv8_A Putative ATP-dependent 100.0 2.2E-54 7.5E-59 412.5 40.6 355 26-394 5-360 (367)
8 1fuu_A Yeast initiation factor 100.0 1.2E-56 4.1E-61 432.4 23.1 376 20-402 14-389 (394)
9 3pey_A ATP-dependent RNA helic 100.0 3.6E-54 1.2E-58 415.1 39.4 356 25-391 3-369 (395)
10 3fht_A ATP-dependent RNA helic 100.0 3.7E-54 1.3E-58 417.5 39.1 364 23-396 21-397 (412)
11 3sqw_A ATP-dependent RNA helic 100.0 1.3E-53 4.4E-58 429.5 37.2 367 23-390 13-409 (579)
12 3i5x_A ATP-dependent RNA helic 100.0 1.5E-53 5E-58 429.1 35.8 357 34-391 79-461 (563)
13 2z0m_A 337AA long hypothetical 100.0 3.6E-52 1.2E-56 392.5 36.9 334 34-391 1-334 (337)
14 3fmp_B ATP-dependent RNA helic 100.0 2.9E-54 9.9E-59 425.5 22.7 373 13-394 75-462 (479)
15 2v1x_A ATP-dependent DNA helic 100.0 2.3E-52 7.9E-57 416.6 33.0 348 22-387 14-382 (591)
16 1oyw_A RECQ helicase, ATP-depe 100.0 4.9E-51 1.7E-55 403.4 35.2 342 26-389 1-353 (523)
17 3fho_A ATP-dependent RNA helic 100.0 7.9E-53 2.7E-57 416.4 20.8 383 5-397 96-489 (508)
18 3oiy_A Reverse gyrase helicase 100.0 2.6E-48 8.8E-53 376.2 29.6 326 37-392 9-376 (414)
19 2va8_A SSO2462, SKI2-type heli 100.0 9.4E-46 3.2E-50 381.6 34.0 339 24-380 5-409 (715)
20 2zj8_A DNA helicase, putative 100.0 2.4E-46 8.3E-51 385.7 28.8 332 28-380 2-388 (720)
21 2ykg_A Probable ATP-dependent 100.0 2.1E-46 7E-51 386.5 26.3 340 39-383 3-520 (696)
22 4a2p_A RIG-I, retinoic acid in 100.0 6E-46 2.1E-50 373.8 29.0 330 48-382 6-511 (556)
23 2p6r_A Afuhel308 helicase; pro 100.0 3.1E-46 1.1E-50 383.8 26.1 336 28-381 2-390 (702)
24 3tbk_A RIG-I helicase domain; 100.0 2.6E-45 8.8E-50 369.1 30.5 333 49-387 4-515 (555)
25 4a2q_A RIG-I, retinoic acid in 100.0 1.8E-44 6E-49 375.3 31.1 334 44-382 243-752 (797)
26 1wp9_A ATP-dependent RNA helic 100.0 7.7E-44 2.6E-48 352.7 33.9 323 49-382 9-478 (494)
27 3l9o_A ATP-dependent RNA helic 100.0 8.3E-45 2.8E-49 384.0 27.9 329 28-379 163-597 (1108)
28 2xgj_A ATP-dependent RNA helic 100.0 5.8E-43 2E-47 366.9 37.6 313 43-379 81-499 (1010)
29 4ddu_A Reverse gyrase; topoiso 100.0 5.1E-44 1.7E-48 377.9 29.2 325 40-392 69-503 (1104)
30 1gm5_A RECG; helicase, replica 100.0 3.5E-44 1.2E-48 364.9 24.5 346 36-407 356-724 (780)
31 4a2w_A RIG-I, retinoic acid in 100.0 1.6E-43 5.4E-48 371.7 29.6 333 44-381 243-751 (936)
32 1tf5_A Preprotein translocase 100.0 1.5E-42 5.2E-47 345.9 31.9 323 44-381 79-547 (844)
33 4gl2_A Interferon-induced heli 100.0 6.3E-44 2.2E-48 368.1 21.8 326 49-379 7-519 (699)
34 2eyq_A TRCF, transcription-rep 100.0 5.6E-42 1.9E-46 364.7 34.2 322 33-379 587-922 (1151)
35 1gku_B Reverse gyrase, TOP-RG; 100.0 1.5E-43 5E-48 374.8 21.3 324 40-393 48-468 (1054)
36 4a4z_A Antiviral helicase SKI2 100.0 4.3E-42 1.5E-46 360.4 28.3 309 44-376 35-489 (997)
37 2oca_A DAR protein, ATP-depend 100.0 1.1E-41 3.8E-46 338.5 21.1 311 49-377 113-453 (510)
38 4f92_B U5 small nuclear ribonu 100.0 3.6E-40 1.2E-44 360.2 31.8 342 34-387 911-1316(1724)
39 3fe2_A Probable ATP-dependent 100.0 3E-40 1E-44 295.3 25.7 237 1-237 3-239 (242)
40 2fsf_A Preprotein translocase 100.0 8.2E-40 2.8E-44 325.3 29.4 324 44-382 70-586 (853)
41 4f92_B U5 small nuclear ribonu 100.0 1.8E-40 6.3E-45 362.5 26.3 347 33-387 65-481 (1724)
42 1nkt_A Preprotein translocase 100.0 5.5E-39 1.9E-43 319.7 33.2 336 44-394 107-636 (922)
43 2fwr_A DNA repair protein RAD2 100.0 1.1E-40 3.8E-45 328.1 14.9 293 49-379 93-454 (472)
44 2whx_A Serine protease/ntpase/ 100.0 2.8E-40 9.6E-45 330.5 13.5 318 32-395 155-497 (618)
45 2jlq_A Serine protease subunit 100.0 9.1E-40 3.1E-44 317.7 15.3 287 46-378 1-310 (451)
46 1yks_A Genome polyprotein [con 100.0 4.7E-40 1.6E-44 318.3 9.3 286 60-398 4-321 (440)
47 2wv9_A Flavivirin protease NS2 100.0 4.2E-39 1.4E-43 323.9 13.5 304 42-391 203-548 (673)
48 3h1t_A Type I site-specific re 100.0 1.2E-37 4.2E-42 314.3 22.9 314 49-377 178-556 (590)
49 2xau_A PRE-mRNA-splicing facto 100.0 7.4E-38 2.5E-42 320.7 21.0 336 24-381 69-445 (773)
50 3o8b_A HCV NS3 protease/helica 100.0 6.4E-38 2.2E-42 310.4 15.0 279 49-383 217-518 (666)
51 3iuy_A Probable ATP-dependent 100.0 3.9E-36 1.3E-40 266.3 22.4 215 19-234 11-227 (228)
52 2v6i_A RNA helicase; membrane, 100.0 9.3E-37 3.2E-41 294.6 19.8 269 63-376 1-288 (431)
53 3dmq_A RNA polymerase-associat 100.0 2.2E-36 7.4E-41 318.0 22.8 333 49-393 153-627 (968)
54 2z83_A Helicase/nucleoside tri 100.0 2.1E-37 7.2E-42 301.6 14.0 280 55-379 12-313 (459)
55 1wrb_A DJVLGB; RNA helicase, D 100.0 7.8E-36 2.7E-40 268.7 22.2 227 12-238 6-242 (253)
56 3bor_A Human initiation factor 100.0 1.3E-35 4.4E-40 264.2 22.4 214 17-235 20-234 (237)
57 1vec_A ATP-dependent RNA helic 100.0 6.9E-35 2.4E-39 254.3 25.0 202 27-233 3-205 (206)
58 3ber_A Probable ATP-dependent 100.0 4.7E-35 1.6E-39 262.1 23.5 207 24-235 40-247 (249)
59 1z63_A Helicase of the SNF2/RA 100.0 4.8E-35 1.7E-39 290.0 26.0 327 49-396 37-468 (500)
60 1q0u_A Bstdead; DEAD protein, 100.0 2.1E-35 7.3E-40 259.8 20.6 208 25-237 2-213 (219)
61 2oxc_A Probable ATP-dependent 100.0 6.1E-35 2.1E-39 258.8 22.8 211 18-234 15-227 (230)
62 1qde_A EIF4A, translation init 100.0 8.2E-35 2.8E-39 257.2 23.2 211 20-236 7-217 (224)
63 3dkp_A Probable ATP-dependent 100.0 4.6E-35 1.6E-39 262.4 21.5 229 5-237 3-242 (245)
64 2pl3_A Probable ATP-dependent 100.0 2.3E-34 7.9E-39 256.3 25.5 226 3-235 6-232 (236)
65 3fmo_B ATP-dependent RNA helic 100.0 2.7E-34 9.1E-39 263.9 23.9 217 12-236 74-298 (300)
66 2gxq_A Heat resistant RNA depe 100.0 7.4E-34 2.5E-38 248.0 25.1 204 28-235 2-205 (207)
67 3rc3_A ATP-dependent RNA helic 100.0 7.7E-34 2.7E-38 284.7 26.4 274 58-376 149-442 (677)
68 1t6n_A Probable ATP-dependent 100.0 6.7E-34 2.3E-38 250.6 21.8 211 19-234 6-219 (220)
69 3ly5_A ATP-dependent RNA helic 100.0 9.8E-34 3.3E-38 255.5 23.0 205 27-232 52-259 (262)
70 1z3i_X Similar to RAD54-like; 100.0 5.3E-32 1.8E-36 274.0 35.5 319 49-375 55-522 (644)
71 3jux_A Protein translocase sub 100.0 7E-32 2.4E-36 263.1 33.2 322 44-383 71-591 (822)
72 3mwy_W Chromo domain-containin 100.0 1.5E-32 5.1E-37 284.9 29.5 335 49-396 236-699 (800)
73 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 6.2E-32 2.1E-36 281.9 27.5 323 36-376 251-706 (1038)
74 2ipc_A Preprotein translocase 100.0 7.6E-28 2.6E-32 239.1 31.5 320 44-382 75-701 (997)
75 1c4o_A DNA nucleotide excision 100.0 3.2E-27 1.1E-31 238.7 29.5 174 205-388 380-559 (664)
76 2jgn_A DBX, DDX3, ATP-dependen 100.0 7.9E-28 2.7E-32 204.5 18.3 166 242-407 16-181 (185)
77 2p6n_A ATP-dependent RNA helic 100.0 1.6E-27 5.6E-32 203.4 18.3 178 226-406 11-189 (191)
78 2d7d_A Uvrabc system protein B 100.0 1.3E-26 4.4E-31 234.1 26.6 174 204-387 385-564 (661)
79 2hjv_A ATP-dependent RNA helic 99.9 7E-26 2.4E-30 188.8 19.9 148 243-391 7-154 (163)
80 1fuk_A Eukaryotic initiation f 99.9 3.8E-26 1.3E-30 191.0 16.2 153 246-399 4-157 (165)
81 1t5i_A C_terminal domain of A 99.9 5.7E-26 2E-30 190.8 14.1 158 244-402 4-162 (172)
82 2rb4_A ATP-dependent RNA helic 99.9 2.6E-25 8.9E-30 187.7 16.3 148 244-392 6-160 (175)
83 3eaq_A Heat resistant RNA depe 99.9 1.4E-24 4.7E-29 188.8 18.2 146 246-392 6-151 (212)
84 2vl7_A XPD; helicase, unknown 99.9 8.6E-25 2.9E-29 216.7 18.2 303 44-379 3-521 (540)
85 3b6e_A Interferon-induced heli 99.9 6.6E-25 2.3E-29 192.5 12.3 165 47-214 31-216 (216)
86 3i32_A Heat resistant RNA depe 99.9 6.2E-24 2.1E-28 193.2 18.1 144 246-390 3-146 (300)
87 3crv_A XPD/RAD3 related DNA he 99.9 2.7E-22 9.3E-27 199.6 30.1 314 46-379 1-531 (551)
88 1rif_A DAR protein, DNA helica 99.9 3E-24 1E-28 196.0 8.6 194 5-219 67-266 (282)
89 2yjt_D ATP-dependent RNA helic 99.8 2E-25 6.7E-30 187.5 0.0 146 247-393 5-151 (170)
90 4a15_A XPD helicase, ATP-depen 99.9 1.7E-20 5.7E-25 188.0 22.3 315 49-379 3-584 (620)
91 3llm_A ATP-dependent RNA helic 99.8 2.4E-20 8.3E-25 165.1 16.8 168 49-230 61-231 (235)
92 2fz4_A DNA repair protein RAD2 99.8 3.6E-20 1.2E-24 163.8 15.7 138 49-218 93-231 (237)
93 1z5z_A Helicase of the SNF2/RA 99.8 6.3E-19 2.2E-23 158.3 14.2 126 254-379 93-224 (271)
94 1w36_D RECD, exodeoxyribonucle 98.9 4.2E-09 1.4E-13 105.5 9.1 146 51-214 151-298 (608)
95 3upu_A ATP-dependent DNA helic 98.6 2.1E-06 7.2E-11 83.2 19.8 69 45-120 21-94 (459)
96 4b3f_X DNA-binding protein smu 98.6 2.4E-07 8.2E-12 93.9 11.8 67 49-123 189-256 (646)
97 2gk6_A Regulator of nonsense t 98.5 1.3E-06 4.5E-11 87.9 16.0 70 47-123 178-247 (624)
98 3e1s_A Exodeoxyribonuclease V, 98.5 3.3E-07 1.1E-11 90.9 11.1 124 46-213 187-314 (574)
99 3lfu_A DNA helicase II; SF1 he 98.5 1.2E-05 3.9E-10 81.8 22.3 72 48-125 8-79 (647)
100 2xzl_A ATP-dependent helicase 98.5 1.7E-06 5.9E-11 89.0 14.7 70 47-123 358-427 (802)
101 2wjy_A Regulator of nonsense t 98.4 3.5E-06 1.2E-10 86.7 15.0 69 48-123 355-423 (800)
102 3hgt_A HDA1 complex subunit 3; 98.0 9.3E-05 3.2E-09 66.5 12.8 123 255-382 107-240 (328)
103 2o0j_A Terminase, DNA packagin 97.6 0.00032 1.1E-08 65.4 11.0 71 49-125 163-233 (385)
104 3cpe_A Terminase, DNA packagin 97.5 0.0018 6E-08 64.7 15.1 73 49-127 163-235 (592)
105 3ec2_A DNA replication protein 97.4 0.00094 3.2E-08 55.4 10.0 31 51-81 16-55 (180)
106 3vkw_A Replicase large subunit 97.4 0.00068 2.3E-08 64.0 9.4 107 66-214 163-269 (446)
107 1xx6_A Thymidine kinase; NESG, 97.2 0.00059 2E-08 57.1 6.7 38 65-110 9-46 (191)
108 1pjr_A PCRA; DNA repair, DNA r 97.2 0.00096 3.3E-08 68.3 9.3 71 48-124 10-80 (724)
109 2j9r_A Thymidine kinase; TK1, 97.1 0.0007 2.4E-08 57.2 5.6 37 67-111 31-67 (214)
110 2orw_A Thymidine kinase; TMTK, 97.0 0.00086 2.9E-08 55.9 5.4 39 64-110 3-41 (184)
111 2b8t_A Thymidine kinase; deoxy 97.0 0.00099 3.4E-08 57.1 5.7 90 65-187 13-102 (223)
112 3u4q_A ATP-dependent helicase/ 96.9 0.0032 1.1E-07 68.4 10.7 126 49-184 10-137 (1232)
113 1l8q_A Chromosomal replication 96.9 0.012 4E-07 53.9 13.0 17 65-81 38-54 (324)
114 1uaa_A REP helicase, protein ( 96.8 0.0021 7.1E-08 65.4 7.6 71 49-125 2-72 (673)
115 3te6_A Regulatory protein SIR3 96.8 0.014 4.9E-07 52.8 12.1 26 64-90 45-70 (318)
116 2orv_A Thymidine kinase; TP4A 96.7 0.0021 7.2E-08 54.8 5.7 38 65-110 20-57 (234)
117 2kjq_A DNAA-related protein; s 96.7 0.00094 3.2E-08 53.5 3.2 18 63-80 35-52 (149)
118 2zpa_A Uncharacterized protein 96.6 0.014 4.7E-07 58.1 11.7 113 49-216 175-289 (671)
119 3e2i_A Thymidine kinase; Zn-bi 96.6 0.003 1E-07 53.2 5.7 38 65-110 29-66 (219)
120 1w4r_A Thymidine kinase; type 96.4 0.0026 8.9E-08 52.8 4.3 37 65-109 21-57 (195)
121 2p65_A Hypothetical protein PF 96.4 0.03 1E-06 46.0 10.8 19 64-82 43-61 (187)
122 2z4s_A Chromosomal replication 96.3 0.028 9.5E-07 53.7 11.6 18 65-82 131-148 (440)
123 1d2n_A N-ethylmaleimide-sensit 96.3 0.038 1.3E-06 49.0 11.6 18 65-82 65-82 (272)
124 1a5t_A Delta prime, HOLB; zinc 96.2 0.015 5.1E-07 53.4 8.6 40 50-90 3-49 (334)
125 3bos_A Putative DNA replicatio 96.2 0.017 5.8E-07 50.0 8.6 19 63-81 51-69 (242)
126 2chg_A Replication factor C sm 96.1 0.048 1.6E-06 46.3 11.1 40 173-213 101-140 (226)
127 1gm5_A RECG; helicase, replica 96.1 0.024 8.1E-07 58.1 10.3 84 265-348 410-498 (780)
128 3kl4_A SRP54, signal recogniti 96.1 0.046 1.6E-06 51.7 11.3 54 173-226 178-234 (433)
129 2w58_A DNAI, primosome compone 95.9 0.044 1.5E-06 46.0 9.7 17 65-81 55-71 (202)
130 2v1u_A Cell division control p 95.9 0.079 2.7E-06 49.4 12.2 18 64-81 44-61 (387)
131 1jbk_A CLPB protein; beta barr 95.8 0.15 5.3E-06 41.8 12.5 17 65-81 44-60 (195)
132 3h4m_A Proteasome-activating n 95.8 0.045 1.5E-06 48.8 9.6 56 24-81 11-68 (285)
133 3eie_A Vacuolar protein sortin 95.7 0.018 6.2E-07 52.6 7.0 56 24-82 12-69 (322)
134 2qgz_A Helicase loader, putati 95.7 0.013 4.6E-07 53.0 5.9 19 64-82 152-170 (308)
135 1g5t_A COB(I)alamin adenosyltr 95.7 0.15 5E-06 42.3 11.6 34 65-106 29-62 (196)
136 3u61_B DNA polymerase accessor 95.7 0.022 7.6E-07 52.0 7.5 37 174-211 105-142 (324)
137 2qby_B CDC6 homolog 3, cell di 95.4 0.061 2.1E-06 50.2 9.5 17 65-81 46-62 (384)
138 1fnn_A CDC6P, cell division co 95.3 0.036 1.2E-06 51.9 7.6 16 66-81 46-61 (389)
139 3dm5_A SRP54, signal recogniti 95.3 0.094 3.2E-06 49.6 10.2 129 66-225 102-234 (443)
140 4b4t_J 26S protease regulatory 95.2 0.17 5.8E-06 47.1 11.5 54 25-81 143-199 (405)
141 1iqp_A RFCS; clamp loader, ext 94.9 0.083 2.8E-06 48.0 8.5 39 173-212 109-147 (327)
142 3syl_A Protein CBBX; photosynt 94.8 0.053 1.8E-06 49.0 7.0 18 65-82 68-85 (309)
143 3pfi_A Holliday junction ATP-d 94.8 0.095 3.2E-06 48.0 8.6 17 65-81 56-72 (338)
144 2qby_A CDC6 homolog 1, cell di 94.7 0.079 2.7E-06 49.4 8.1 18 64-81 45-62 (386)
145 1njg_A DNA polymerase III subu 94.7 0.48 1.6E-05 40.4 12.7 16 66-81 47-62 (250)
146 3oiy_A Reverse gyrase helicase 94.6 0.14 4.7E-06 48.4 9.5 79 270-348 62-147 (414)
147 3uk6_A RUVB-like 2; hexameric 94.5 0.57 1.9E-05 43.3 13.5 18 65-82 71-88 (368)
148 3pvs_A Replication-associated 94.4 0.089 3E-06 50.3 7.6 18 65-82 51-68 (447)
149 2dr3_A UPF0273 protein PH0284; 94.3 0.21 7E-06 43.2 9.3 51 63-122 22-72 (247)
150 1sxj_D Activator 1 41 kDa subu 94.2 0.15 5.3E-06 46.8 8.8 39 173-212 132-170 (353)
151 1sxj_E Activator 1 40 kDa subu 94.2 0.26 8.8E-06 45.4 10.2 42 173-215 133-174 (354)
152 2q6t_A DNAB replication FORK h 94.1 0.32 1.1E-05 46.5 11.0 116 63-189 199-325 (444)
153 2eyq_A TRCF, transcription-rep 94.1 0.22 7.7E-06 53.5 10.8 78 268-345 648-730 (1151)
154 3vfd_A Spastin; ATPase, microt 94.1 0.32 1.1E-05 45.5 10.8 19 64-82 148-166 (389)
155 2r6a_A DNAB helicase, replicat 93.9 0.48 1.6E-05 45.4 11.8 39 63-108 202-240 (454)
156 1jr3_A DNA polymerase III subu 93.7 0.41 1.4E-05 44.3 10.6 16 66-81 40-55 (373)
157 2qp9_X Vacuolar protein sortin 93.5 0.22 7.6E-06 46.0 8.3 18 65-82 85-102 (355)
158 2w0m_A SSO2452; RECA, SSPF, un 93.5 0.27 9.2E-06 42.0 8.5 21 62-82 21-41 (235)
159 1sxj_A Activator 1 95 kDa subu 93.5 0.17 5.8E-06 49.4 7.8 41 173-215 147-189 (516)
160 1sxj_C Activator 1 40 kDa subu 93.4 0.22 7.6E-06 45.6 8.2 39 173-212 109-147 (340)
161 3hjh_A Transcription-repair-co 93.4 0.39 1.3E-05 46.2 10.0 76 259-348 371-446 (483)
162 2gno_A DNA polymerase III, gam 93.4 0.26 8.9E-06 44.3 8.3 39 173-212 81-119 (305)
163 2zan_A Vacuolar protein sortin 93.3 0.094 3.2E-06 50.1 5.6 18 64-81 167-184 (444)
164 1sxj_B Activator 1 37 kDa subu 92.7 0.22 7.5E-06 45.0 7.0 38 174-212 107-144 (323)
165 2fna_A Conserved hypothetical 92.5 4.7 0.00016 36.5 16.0 29 51-80 18-46 (357)
166 1hqc_A RUVB; extended AAA-ATPa 92.5 0.18 6.1E-06 45.8 6.1 17 65-81 39-55 (324)
167 4ddu_A Reverse gyrase; topoiso 92.5 0.4 1.4E-05 51.3 9.4 79 270-348 119-204 (1104)
168 4a1f_A DNAB helicase, replicat 92.4 0.16 5.5E-06 46.3 5.5 117 61-188 43-170 (338)
169 2l82_A Designed protein OR32; 92.1 1 3.5E-05 32.3 8.2 51 275-325 5-55 (162)
170 3hu3_A Transitional endoplasmi 91.8 0.28 9.7E-06 47.3 6.8 18 64-81 238-255 (489)
171 4b4t_M 26S protease regulatory 91.7 0.16 5.5E-06 48.0 4.8 55 24-81 175-232 (434)
172 2l8b_A Protein TRAI, DNA helic 91.6 0.2 6.7E-06 40.8 4.5 122 50-214 35-158 (189)
173 1w5s_A Origin recognition comp 91.5 0.41 1.4E-05 44.9 7.5 17 65-81 51-69 (412)
174 3cf2_A TER ATPase, transitiona 91.4 0.41 1.4E-05 49.0 7.6 57 21-80 468-527 (806)
175 3cmu_A Protein RECA, recombina 91.3 0.43 1.5E-05 53.6 8.2 38 64-109 1427-1464(2050)
176 1oyw_A RECQ helicase, ATP-depe 91.3 0.87 3E-05 44.4 9.8 60 271-330 64-123 (523)
177 3m6a_A ATP-dependent protease 91.3 0.35 1.2E-05 47.5 6.9 18 64-81 108-125 (543)
178 3n70_A Transport activator; si 90.9 0.21 7E-06 39.3 4.0 21 62-82 22-42 (145)
179 2p6n_A ATP-dependent RNA helic 90.7 3 0.0001 34.3 11.2 73 100-182 54-130 (191)
180 3ber_A Probable ATP-dependent 90.6 2.1 7E-05 37.0 10.7 73 272-348 111-194 (249)
181 1t6n_A Probable ATP-dependent 90.6 1.2 4.1E-05 37.5 9.0 74 272-348 82-166 (220)
182 2zr9_A Protein RECA, recombina 90.5 0.24 8.3E-06 45.5 4.6 38 63-108 60-97 (349)
183 1n0w_A DNA repair protein RAD5 90.5 1.3 4.5E-05 37.8 9.3 21 63-83 23-43 (243)
184 3co5_A Putative two-component 90.4 0.19 6.5E-06 39.4 3.4 19 62-80 25-43 (143)
185 2v1x_A ATP-dependent DNA helic 90.2 0.98 3.3E-05 44.8 9.0 60 271-330 83-144 (591)
186 1ls1_A Signal recognition part 90.1 4.3 0.00015 36.1 12.5 45 173-217 179-224 (295)
187 1nlf_A Regulatory protein REPA 89.9 1.8 6.1E-05 38.2 9.7 24 60-83 26-49 (279)
188 3bgw_A DNAB-like replicative h 89.8 0.75 2.6E-05 43.8 7.5 51 62-121 195-245 (444)
189 2hjv_A ATP-dependent RNA helic 89.8 2.2 7.7E-05 33.9 9.5 74 100-183 35-112 (163)
190 2ehv_A Hypothetical protein PH 89.8 0.49 1.7E-05 40.9 5.9 22 61-82 27-48 (251)
191 1qvr_A CLPB protein; coiled co 89.5 1.2 4E-05 46.4 9.5 18 65-82 192-209 (854)
192 2rb4_A ATP-dependent RNA helic 89.5 2.6 8.8E-05 34.0 9.8 73 100-182 34-110 (175)
193 1xp8_A RECA protein, recombina 89.4 0.9 3.1E-05 41.9 7.5 38 64-109 74-111 (366)
194 3bh0_A DNAB-like replicative h 88.9 0.79 2.7E-05 41.4 6.7 53 61-122 65-117 (315)
195 2z43_A DNA repair and recombin 88.9 0.72 2.4E-05 41.9 6.5 57 65-123 108-165 (324)
196 4b4t_H 26S protease regulatory 88.2 0.49 1.7E-05 44.8 4.9 53 24-81 203-260 (467)
197 3u4q_B ATP-dependent helicase/ 88.1 0.84 2.9E-05 49.4 7.4 88 67-184 4-91 (1166)
198 1fuk_A Eukaryotic initiation f 88.0 3 0.0001 33.2 9.1 74 100-183 30-107 (165)
199 4b4t_L 26S protease subunit RP 87.9 0.4 1.4E-05 45.3 4.1 55 24-81 175-232 (437)
200 3hr8_A Protein RECA; alpha and 87.7 0.43 1.5E-05 43.8 4.1 38 64-109 61-98 (356)
201 3io5_A Recombination and repai 87.6 1 3.5E-05 40.4 6.3 90 66-187 30-124 (333)
202 4b4t_K 26S protease regulatory 87.1 0.54 1.8E-05 44.3 4.5 55 24-81 166-223 (428)
203 3eaq_A Heat resistant RNA depe 87.1 3.1 0.00011 34.9 9.0 71 100-180 31-105 (212)
204 2i1q_A DNA repair and recombin 87.0 0.78 2.7E-05 41.6 5.4 21 65-85 99-119 (322)
205 3cf2_A TER ATPase, transitiona 86.9 1.1 3.6E-05 46.0 6.8 16 65-80 239-254 (806)
206 1t5i_A C_terminal domain of A 86.7 7.6 0.00026 31.1 10.8 74 100-183 31-108 (172)
207 1r6b_X CLPA protein; AAA+, N-t 86.6 4.1 0.00014 41.7 11.2 19 64-82 207-225 (758)
208 2oxc_A Probable ATP-dependent 86.6 1.5 5.1E-05 37.3 6.8 71 272-347 92-173 (230)
209 1v5w_A DMC1, meiotic recombina 86.5 1.1 3.8E-05 41.0 6.2 57 65-123 123-180 (343)
210 3fe2_A Probable ATP-dependent 86.4 3.2 0.00011 35.5 9.0 73 272-348 102-184 (242)
211 2l6f_A Focal adhesion kinase 1 86.4 0.14 4.7E-06 41.8 0.0 13 424-436 187-199 (215)
212 1p9r_A General secretion pathw 86.3 1 3.6E-05 42.3 6.0 37 52-89 153-191 (418)
213 2oap_1 GSPE-2, type II secreti 86.1 1.7 5.8E-05 42.1 7.5 39 40-80 237-276 (511)
214 4b4t_I 26S protease regulatory 86.1 1.2 4.2E-05 41.7 6.2 55 24-81 176-233 (437)
215 1xti_A Probable ATP-dependent 86.1 2.7 9.3E-05 38.8 8.9 72 272-346 76-158 (391)
216 2jgn_A DBX, DDX3, ATP-dependen 85.8 4 0.00014 33.3 8.8 71 100-180 46-120 (185)
217 1e9r_A Conjugal transfer prote 85.6 0.78 2.7E-05 43.6 4.9 43 64-114 53-95 (437)
218 3e70_C DPA, signal recognition 85.5 6.4 0.00022 35.5 10.7 53 174-226 211-264 (328)
219 2j37_W Signal recognition part 84.6 5.4 0.00019 38.4 10.2 17 66-82 103-119 (504)
220 4akg_A Glutathione S-transfera 84.6 0.71 2.4E-05 53.7 4.6 49 34-83 890-942 (2695)
221 3b85_A Phosphate starvation-in 84.3 1 3.6E-05 37.8 4.5 31 50-80 8-38 (208)
222 2eyu_A Twitching motility prot 84.1 0.79 2.7E-05 40.1 3.8 20 61-80 22-41 (261)
223 3i5x_A ATP-dependent RNA helic 84.0 14 0.00046 36.2 13.3 77 100-183 339-419 (563)
224 3bor_A Human initiation factor 83.9 2.4 8.2E-05 36.2 6.9 74 271-347 97-180 (237)
225 3gk5_A Uncharacterized rhodane 83.3 1.2 4.1E-05 32.8 4.0 46 262-307 45-90 (108)
226 1tue_A Replication protein E1; 83.1 1.6 5.5E-05 36.4 5.0 49 37-88 29-81 (212)
227 3g5j_A Putative ATP/GTP bindin 83.0 2 6.8E-05 32.8 5.4 48 261-308 77-126 (134)
228 1vec_A ATP-dependent RNA helic 83.0 4.9 0.00017 33.1 8.4 72 272-347 71-153 (206)
229 3cf0_A Transitional endoplasmi 82.9 0.58 2E-05 42.0 2.5 55 24-81 9-66 (301)
230 3hws_A ATP-dependent CLP prote 82.9 2 7E-05 39.5 6.4 20 63-82 50-69 (363)
231 4ag6_A VIRB4 ATPase, type IV s 82.8 1.4 4.7E-05 41.2 5.2 41 63-111 34-74 (392)
232 3iuy_A Probable ATP-dependent 82.8 3.5 0.00012 34.8 7.4 74 271-348 93-175 (228)
233 2gxq_A Heat resistant RNA depe 82.7 5.1 0.00017 33.0 8.3 73 272-348 72-152 (207)
234 1xwi_A SKD1 protein; VPS4B, AA 82.5 0.5 1.7E-05 42.9 2.0 55 24-81 6-62 (322)
235 2i4i_A ATP-dependent RNA helic 82.4 7.1 0.00024 36.3 10.1 71 100-180 276-350 (417)
236 1gku_B Reverse gyrase, TOP-RG; 81.9 4 0.00014 43.5 8.8 74 271-346 98-181 (1054)
237 3ly5_A ATP-dependent RNA helic 81.9 6.2 0.00021 34.2 8.8 74 271-348 125-209 (262)
238 1ixz_A ATP-dependent metallopr 81.9 1.7 5.7E-05 37.7 5.1 55 23-80 9-65 (254)
239 3sqw_A ATP-dependent RNA helic 81.4 21 0.00074 34.9 13.6 78 100-184 288-369 (579)
240 1u0j_A DNA replication protein 81.4 2.8 9.6E-05 36.5 6.2 44 36-82 73-122 (267)
241 2r44_A Uncharacterized protein 81.2 1.1 3.9E-05 40.6 3.9 25 57-81 39-63 (331)
242 3jvv_A Twitching mobility prot 81.0 1.8 6E-05 39.8 5.0 26 63-89 122-147 (356)
243 2bjv_A PSP operon transcriptio 80.9 1.3 4.4E-05 38.7 4.0 19 63-81 28-46 (265)
244 2x8a_A Nuclear valosin-contain 80.5 0.51 1.7E-05 41.7 1.2 55 23-80 3-60 (274)
245 2ffh_A Protein (FFH); SRP54, s 80.4 14 0.00048 34.6 11.1 18 66-83 100-117 (425)
246 3cmw_A Protein RECA, recombina 80.4 2.5 8.4E-05 47.0 6.7 90 65-188 1432-1523(1706)
247 3i32_A Heat resistant RNA depe 80.2 6.8 0.00023 34.8 8.6 74 100-183 28-105 (300)
248 1w36_B RECB, exodeoxyribonucle 80.2 3.6 0.00012 44.5 7.8 59 65-123 17-79 (1180)
249 1wp9_A ATP-dependent RNA helic 79.9 6.1 0.00021 37.4 8.9 72 271-347 51-132 (494)
250 3nbx_X ATPase RAVA; AAA+ ATPas 79.6 1.1 3.6E-05 43.4 3.2 27 54-80 31-57 (500)
251 2zts_A Putative uncharacterize 79.6 1.4 4.9E-05 37.8 3.8 52 63-122 29-80 (251)
252 1yks_A Genome polyprotein [con 79.1 4.5 0.00015 38.3 7.4 68 100-179 177-245 (440)
253 3vkg_A Dynein heavy chain, cyt 78.7 4.5 0.00015 47.9 8.3 49 34-83 873-925 (3245)
254 3vaa_A Shikimate kinase, SK; s 78.5 1.4 4.7E-05 36.6 3.3 20 63-82 24-43 (199)
255 2pl3_A Probable ATP-dependent 78.3 4.8 0.00017 34.1 6.8 73 271-348 96-179 (236)
256 2r8r_A Sensor protein; KDPD, P 78.2 2.4 8.3E-05 35.9 4.6 22 66-87 8-29 (228)
257 2px0_A Flagellar biosynthesis 78.1 2.4 8.2E-05 37.8 4.9 20 64-83 105-124 (296)
258 2qz4_A Paraplegin; AAA+, SPG7, 78.1 2.3 7.7E-05 36.8 4.7 19 64-82 39-57 (262)
259 1kgd_A CASK, peripheral plasma 78.0 1.5 5.1E-05 35.7 3.3 18 63-80 4-21 (180)
260 1ofh_A ATP-dependent HSL prote 77.9 5.4 0.00018 35.4 7.3 19 64-82 50-68 (310)
261 2pne_A 6.5 kDa glycine-rich an 77.9 2.7 9.3E-05 26.5 3.5 16 428-444 59-74 (81)
262 1qde_A EIF4A, translation init 77.6 3 0.0001 35.1 5.2 73 271-348 81-163 (224)
263 3a8t_A Adenylate isopentenyltr 77.4 1.3 4.5E-05 40.1 2.9 17 66-82 42-58 (339)
264 2qmh_A HPR kinase/phosphorylas 77.3 1.3 4.3E-05 36.8 2.5 17 64-80 34-50 (205)
265 1iy2_A ATP-dependent metallopr 77.1 2.7 9.1E-05 37.0 4.9 53 25-80 35-89 (278)
266 2gza_A Type IV secretion syste 76.6 1.6 5.4E-05 40.2 3.4 21 60-80 171-191 (361)
267 1lvg_A Guanylate kinase, GMP k 76.5 1.7 5.7E-05 36.1 3.2 18 63-80 3-20 (198)
268 3iij_A Coilin-interacting nucl 76.4 1.5 5.3E-05 35.5 2.9 20 63-82 10-29 (180)
269 1ojl_A Transcriptional regulat 76.2 2 6.7E-05 38.5 3.8 19 63-81 24-42 (304)
270 3trf_A Shikimate kinase, SK; a 75.8 1.8 6.1E-05 35.3 3.2 19 64-82 5-23 (185)
271 1c9k_A COBU, adenosylcobinamid 75.8 1.9 6.5E-05 35.1 3.2 45 67-123 2-46 (180)
272 1sky_E F1-ATPase, F1-ATP synth 75.6 28 0.00094 33.1 11.5 26 57-82 144-169 (473)
273 3exa_A TRNA delta(2)-isopenten 75.3 1.6 5.6E-05 39.0 2.9 17 66-82 5-21 (322)
274 2d7d_A Uvrabc system protein B 75.2 59 0.002 32.5 14.6 77 100-186 445-525 (661)
275 2qor_A Guanylate kinase; phosp 74.9 1.9 6.6E-05 35.8 3.2 21 61-81 9-29 (204)
276 3foz_A TRNA delta(2)-isopenten 74.9 1.7 5.8E-05 38.8 2.9 17 66-82 12-28 (316)
277 3tau_A Guanylate kinase, GMP k 74.5 2.1 7E-05 35.8 3.3 18 63-80 7-24 (208)
278 2ze6_A Isopentenyl transferase 74.5 1.8 6.1E-05 37.6 3.0 16 67-82 4-19 (253)
279 1lv7_A FTSH; alpha/beta domain 74.5 1.8 6.2E-05 37.5 3.0 55 24-81 6-62 (257)
280 3pey_A ATP-dependent RNA helic 74.4 46 0.0016 30.2 13.1 76 100-185 243-322 (395)
281 1hv8_A Putative ATP-dependent 74.3 11 0.00037 34.2 8.5 73 100-182 238-314 (367)
282 4f4c_A Multidrug resistance pr 74.3 1.4 4.7E-05 48.3 2.6 27 61-89 1102-1128(1321)
283 3lw7_A Adenylate kinase relate 74.2 1.5 5E-05 35.2 2.2 17 66-82 3-19 (179)
284 3t15_A Ribulose bisphosphate c 74.1 1.7 5.8E-05 38.7 2.8 18 65-82 37-54 (293)
285 1gmx_A GLPE protein; transfera 74.1 3.7 0.00013 29.9 4.3 46 262-307 48-94 (108)
286 3b9p_A CG5977-PA, isoform A; A 74.0 1.8 6.3E-05 38.4 3.0 55 24-81 15-71 (297)
287 1qhx_A CPT, protein (chloramph 74.0 1.7 5.8E-05 35.1 2.6 17 65-81 4-20 (178)
288 2cvh_A DNA repair and recombin 73.9 3.3 0.00011 34.6 4.5 21 63-83 19-39 (220)
289 3tr0_A Guanylate kinase, GMP k 73.8 2.1 7.3E-05 35.4 3.2 18 63-80 6-23 (205)
290 1zp6_A Hypothetical protein AT 73.6 1.6 5.5E-05 35.7 2.3 19 62-80 7-25 (191)
291 3nwn_A Kinesin-like protein KI 73.4 2.3 8E-05 38.9 3.5 24 58-81 97-122 (359)
292 2pt7_A CAG-ALFA; ATPase, prote 73.3 1.6 5.4E-05 39.7 2.4 19 61-79 168-186 (330)
293 1kag_A SKI, shikimate kinase I 73.3 2.5 8.5E-05 33.9 3.4 18 64-81 4-21 (173)
294 3flh_A Uncharacterized protein 73.1 2.1 7.1E-05 32.4 2.7 46 262-307 61-108 (124)
295 1u94_A RECA protein, recombina 72.9 3.5 0.00012 37.8 4.6 38 63-108 62-99 (356)
296 3fht_A ATP-dependent RNA helic 72.8 14 0.00048 34.1 9.0 72 100-181 266-341 (412)
297 2j41_A Guanylate kinase; GMP, 72.6 2.3 8E-05 35.2 3.2 20 62-81 4-23 (207)
298 1y63_A LMAJ004144AAA protein; 72.5 2.5 8.4E-05 34.5 3.2 19 64-82 10-28 (184)
299 2jtq_A Phage shock protein E; 72.4 8.4 0.00029 26.4 5.6 44 263-307 30-76 (85)
300 1cr0_A DNA primase/helicase; R 72.0 4 0.00014 36.1 4.8 22 61-82 32-53 (296)
301 1um8_A ATP-dependent CLP prote 71.4 2.6 8.9E-05 39.0 3.4 19 64-82 72-90 (376)
302 2ewv_A Twitching motility prot 71.3 2 6.8E-05 39.7 2.6 19 62-80 134-152 (372)
303 3crm_A TRNA delta(2)-isopenten 71.3 2.3 7.9E-05 38.3 2.9 17 66-82 7-23 (323)
304 3ney_A 55 kDa erythrocyte memb 71.2 2.9 9.8E-05 34.7 3.3 18 63-80 18-35 (197)
305 2ius_A DNA translocase FTSK; n 70.9 6.7 0.00023 37.8 6.2 20 63-82 166-185 (512)
306 3d8b_A Fidgetin-like protein 1 70.8 4 0.00014 37.4 4.6 19 64-82 117-135 (357)
307 3foj_A Uncharacterized protein 70.8 2.5 8.5E-05 30.4 2.5 38 270-307 54-91 (100)
308 2r2a_A Uncharacterized protein 70.6 3 0.0001 34.6 3.3 22 66-87 7-28 (199)
309 1bg2_A Kinesin; motor protein, 70.6 3.2 0.00011 37.4 3.7 24 58-81 70-95 (325)
310 1c4o_A DNA nucleotide excision 70.5 85 0.0029 31.4 14.5 77 100-186 439-519 (664)
311 3t0q_A AGR253WP; kinesin, alph 70.5 3.3 0.00011 37.8 3.8 25 57-81 77-103 (349)
312 1wrb_A DJVLGB; RNA helicase, D 70.4 11 0.00036 32.3 7.1 73 272-348 100-182 (253)
313 2j0s_A ATP-dependent RNA helic 70.4 17 0.00058 33.6 9.0 72 100-181 276-351 (410)
314 3ipz_A Monothiol glutaredoxin- 70.2 20 0.00068 26.0 7.5 56 262-317 7-68 (109)
315 4gp7_A Metallophosphoesterase; 70.1 1.7 5.9E-05 35.0 1.7 18 63-80 8-25 (171)
316 1f9v_A Kinesin-like protein KA 70.1 3.4 0.00011 37.7 3.8 25 57-81 76-102 (347)
317 1s2m_A Putative ATP-dependent 70.0 17 0.00059 33.4 8.9 72 100-181 258-333 (400)
318 1z6g_A Guanylate kinase; struc 69.9 3.2 0.00011 35.0 3.4 20 61-80 20-39 (218)
319 2db3_A ATP-dependent RNA helic 69.9 18 0.00063 33.9 9.1 69 102-180 302-374 (434)
320 2v6i_A RNA helicase; membrane, 69.8 6.8 0.00023 36.9 6.0 67 100-178 171-238 (431)
321 4etp_A Kinesin-like protein KA 69.6 3.6 0.00012 38.4 3.9 25 57-81 132-158 (403)
322 3kb2_A SPBC2 prophage-derived 69.5 2.8 9.5E-05 33.4 2.8 17 66-82 3-19 (173)
323 1vma_A Cell division protein F 69.5 5 0.00017 35.9 4.7 17 66-82 106-122 (306)
324 2c9o_A RUVB-like 1; hexameric 69.2 2.8 9.5E-05 40.0 3.2 19 64-82 63-81 (456)
325 1v8k_A Kinesin-like protein KI 69.1 3.3 0.00011 38.5 3.6 23 59-81 148-172 (410)
326 3cm0_A Adenylate kinase; ATP-b 69.1 2.3 7.7E-05 34.6 2.2 19 64-82 4-22 (186)
327 3dc4_A Kinesin-like protein NO 69.0 3.2 0.00011 37.8 3.3 23 59-81 88-112 (344)
328 1zuh_A Shikimate kinase; alpha 69.0 3.1 0.00011 33.1 3.1 19 65-83 8-26 (168)
329 2iut_A DNA translocase FTSK; n 69.0 7.8 0.00027 37.8 6.2 42 64-109 214-255 (574)
330 3lre_A Kinesin-like protein KI 68.9 3.7 0.00013 37.6 3.8 23 59-81 99-123 (355)
331 2h58_A Kinesin-like protein KI 68.9 3.6 0.00012 37.2 3.7 25 57-81 72-98 (330)
332 4a14_A Kinesin, kinesin-like p 68.8 3.7 0.00012 37.4 3.7 23 59-81 77-101 (344)
333 2y65_A Kinesin, kinesin heavy 68.6 3.7 0.00013 37.7 3.7 22 59-80 78-101 (365)
334 1ly1_A Polynucleotide kinase; 68.6 3.1 0.0001 33.5 3.0 16 66-81 4-19 (181)
335 2vvg_A Kinesin-2; motor protei 68.6 3.7 0.00013 37.4 3.7 23 59-81 83-107 (350)
336 4fcw_A Chaperone protein CLPB; 68.6 2.7 9.3E-05 37.5 2.9 17 66-82 49-65 (311)
337 2nr8_A Kinesin-like protein KI 68.4 3.5 0.00012 37.7 3.5 23 58-80 96-120 (358)
338 3gbj_A KIF13B protein; kinesin 68.4 3.6 0.00012 37.6 3.6 25 57-81 84-110 (354)
339 3b6u_A Kinesin-like protein KI 68.3 3.6 0.00012 37.9 3.5 22 59-80 95-118 (372)
340 1goj_A Kinesin, kinesin heavy 68.1 3.8 0.00013 37.4 3.7 21 60-80 75-97 (355)
341 2fsf_A Preprotein translocase 68.1 19 0.00066 36.8 9.0 55 270-330 113-171 (853)
342 3a00_A Guanylate kinase, GMP k 68.0 3.6 0.00012 33.6 3.2 15 66-80 3-17 (186)
343 2zfi_A Kinesin-like protein KI 67.9 3.9 0.00013 37.6 3.7 23 58-80 82-106 (366)
344 3d3q_A TRNA delta(2)-isopenten 67.9 3 0.0001 37.8 2.9 17 66-82 9-25 (340)
345 1xjc_A MOBB protein homolog; s 67.8 6.2 0.00021 31.7 4.5 25 66-91 6-30 (169)
346 1x88_A Kinesin-like protein KI 67.6 3.6 0.00012 37.7 3.4 23 58-80 81-105 (359)
347 1kht_A Adenylate kinase; phosp 67.6 3.5 0.00012 33.5 3.2 18 64-81 3-20 (192)
348 4eun_A Thermoresistant glucoki 67.6 3.7 0.00013 33.9 3.3 19 63-81 28-46 (200)
349 3eme_A Rhodanese-like domain p 67.5 2.8 9.4E-05 30.4 2.2 38 270-307 54-91 (103)
350 2r62_A Cell division protease 67.5 1.6 5.4E-05 38.1 1.0 19 64-82 44-62 (268)
351 1t5c_A CENP-E protein, centrom 67.4 3.8 0.00013 37.3 3.5 23 59-81 71-95 (349)
352 3lda_A DNA repair protein RAD5 66.9 19 0.00065 33.4 8.3 29 20-48 77-105 (400)
353 2c95_A Adenylate kinase 1; tra 66.7 4.3 0.00015 33.2 3.5 21 62-82 7-27 (196)
354 4f4c_A Multidrug resistance pr 66.7 4.7 0.00016 44.1 4.7 33 172-204 570-602 (1321)
355 1in4_A RUVB, holliday junction 66.7 3.4 0.00012 37.4 3.1 17 65-81 52-68 (334)
356 2heh_A KIF2C protein; kinesin, 66.7 4.1 0.00014 37.6 3.6 23 59-81 128-152 (387)
357 1zu4_A FTSY; GTPase, signal re 66.7 5.7 0.00019 35.8 4.5 17 66-82 107-123 (320)
358 1znw_A Guanylate kinase, GMP k 66.6 3.9 0.00013 34.0 3.3 21 60-80 16-36 (207)
359 3bfn_A Kinesin-like protein KI 66.3 3.7 0.00013 38.0 3.2 32 50-81 75-116 (388)
360 3nwj_A ATSK2; P loop, shikimat 66.2 4.2 0.00014 35.2 3.4 20 63-82 47-66 (250)
361 1knq_A Gluconate kinase; ALFA/ 66.1 3.3 0.00011 33.2 2.6 18 64-81 8-25 (175)
362 3iwh_A Rhodanese-like domain p 66.0 3.1 0.00011 30.2 2.2 38 269-306 53-90 (103)
363 2wbe_C Bipolar kinesin KRP-130 65.9 3.9 0.00013 37.6 3.3 22 59-80 94-117 (373)
364 1via_A Shikimate kinase; struc 65.7 4.1 0.00014 32.7 3.1 17 66-82 6-22 (175)
365 3u06_A Protein claret segregat 65.5 4.1 0.00014 38.0 3.4 25 57-81 130-156 (412)
366 3dr5_A Putative O-methyltransf 65.4 45 0.0015 27.8 9.8 75 38-123 25-104 (221)
367 2xau_A PRE-mRNA-splicing facto 65.4 17 0.00057 37.3 8.2 75 100-180 303-393 (773)
368 3zyw_A Glutaredoxin-3; metal b 65.4 26 0.0009 25.5 7.3 56 262-317 5-66 (111)
369 2wv9_A Flavivirin protease NS2 65.4 11 0.00037 37.9 6.7 68 100-179 410-478 (673)
370 3eph_A TRNA isopentenyltransfe 65.3 3.3 0.00011 38.5 2.7 16 67-82 5-20 (409)
371 3cob_A Kinesin heavy chain-lik 65.3 3.9 0.00013 37.6 3.2 25 57-81 71-97 (369)
372 1ex7_A Guanylate kinase; subst 65.3 3.4 0.00012 33.9 2.5 16 65-80 2-17 (186)
373 2pne_A 6.5 kDa glycine-rich an 64.8 9.9 0.00034 24.0 3.9 10 428-437 47-56 (81)
374 3uie_A Adenylyl-sulfate kinase 64.8 3.7 0.00013 33.9 2.7 31 50-81 12-42 (200)
375 1q0u_A Bstdead; DEAD protein, 64.7 4.9 0.00017 33.6 3.6 71 272-346 72-156 (219)
376 1s96_A Guanylate kinase, GMP k 64.7 4.5 0.00015 34.1 3.3 20 61-80 13-32 (219)
377 2owm_A Nckin3-434, related to 64.4 4.9 0.00017 38.0 3.7 23 59-81 130-154 (443)
378 2rep_A Kinesin-like protein KI 64.4 4.9 0.00017 37.0 3.7 23 58-80 108-132 (376)
379 3hix_A ALR3790 protein; rhodan 64.4 7.1 0.00024 28.3 4.0 40 268-307 48-88 (106)
380 1rj9_A FTSY, signal recognitio 64.1 7.9 0.00027 34.5 4.9 17 64-80 102-118 (304)
381 1tf5_A Preprotein translocase 64.1 29 0.00099 35.5 9.4 55 270-330 122-180 (844)
382 3o8b_A HCV NS3 protease/helica 64.0 11 0.00038 37.6 6.3 66 100-179 396-461 (666)
383 2v54_A DTMP kinase, thymidylat 63.9 4.4 0.00015 33.3 3.1 19 63-81 3-21 (204)
384 1wv9_A Rhodanese homolog TT165 63.8 6.2 0.00021 27.8 3.5 35 273-307 54-88 (94)
385 3t61_A Gluconokinase; PSI-biol 63.8 4.1 0.00014 33.6 2.9 18 65-82 19-36 (202)
386 1f2t_A RAD50 ABC-ATPase; DNA d 63.7 5.5 0.00019 31.1 3.4 15 66-80 25-39 (149)
387 2bdt_A BH3686; alpha-beta prot 63.5 4.3 0.00015 33.0 2.9 16 66-81 4-19 (189)
388 3f9v_A Minichromosome maintena 63.4 3.9 0.00013 40.5 3.0 15 66-80 329-343 (595)
389 3pgw_S U1-70K; protein-RNA com 63.1 7.6 0.00026 36.7 4.8 11 341-351 102-112 (437)
390 1ye8_A Protein THEP1, hypothet 62.9 4.9 0.00017 32.6 3.1 15 66-80 2-16 (178)
391 2yan_A Glutaredoxin-3; oxidore 62.6 30 0.001 24.7 7.2 55 264-318 8-68 (105)
392 3lnc_A Guanylate kinase, GMP k 62.6 2.4 8.4E-05 36.0 1.2 20 61-80 24-43 (231)
393 1ak2_A Adenylate kinase isoenz 62.6 5 0.00017 34.0 3.3 19 64-82 16-34 (233)
394 3tbk_A RIG-I helicase domain; 62.6 15 0.00051 35.6 7.1 72 272-347 52-134 (555)
395 2iyv_A Shikimate kinase, SK; t 62.5 5.3 0.00018 32.3 3.3 17 66-82 4-20 (184)
396 3b9q_A Chloroplast SRP recepto 62.4 7.7 0.00026 34.5 4.5 16 65-80 101-116 (302)
397 2yvu_A Probable adenylyl-sulfa 62.4 8.6 0.00029 31.1 4.6 19 64-82 13-31 (186)
398 1fuu_A Yeast initiation factor 62.4 15 0.00052 33.6 6.8 70 271-345 88-167 (394)
399 2bwj_A Adenylate kinase 5; pho 62.2 5.3 0.00018 32.6 3.3 19 64-82 12-30 (199)
400 3tlx_A Adenylate kinase 2; str 62.1 5.7 0.00019 34.1 3.5 19 64-82 29-47 (243)
401 2rhm_A Putative kinase; P-loop 62.1 4.4 0.00015 33.0 2.7 18 65-82 6-23 (193)
402 1e6c_A Shikimate kinase; phosp 62.1 5.3 0.00018 31.8 3.2 17 66-82 4-20 (173)
403 3pxg_A Negative regulator of g 62.0 6.1 0.00021 37.8 4.0 19 64-82 201-219 (468)
404 2jlq_A Serine protease subunit 62.0 15 0.00052 34.7 6.8 68 100-179 188-256 (451)
405 3fb4_A Adenylate kinase; psych 62.0 4.7 0.00016 33.7 2.9 17 66-82 2-18 (216)
406 4a2q_A RIG-I, retinoic acid in 61.9 22 0.00075 36.6 8.4 71 272-346 296-377 (797)
407 2v9p_A Replication protein E1; 61.9 4.8 0.00016 35.9 3.0 20 61-80 123-142 (305)
408 1tev_A UMP-CMP kinase; ploop, 61.9 4.9 0.00017 32.7 3.0 17 66-82 5-21 (196)
409 1g8p_A Magnesium-chelatase 38 61.8 3 0.0001 37.9 1.7 18 64-81 45-62 (350)
410 1ry6_A Internal kinesin; kines 61.8 5.5 0.00019 36.5 3.5 18 64-81 83-102 (360)
411 3dl0_A Adenylate kinase; phosp 61.7 4.7 0.00016 33.7 2.9 17 66-82 2-18 (216)
412 3lay_A Zinc resistance-associa 61.1 2.5 8.5E-05 34.1 0.9 17 378-394 109-125 (175)
413 4a2p_A RIG-I, retinoic acid in 61.0 18 0.00061 35.0 7.4 73 272-348 55-138 (556)
414 1zd8_A GTP:AMP phosphotransfer 61.0 5.2 0.00018 33.8 3.0 17 65-81 8-24 (227)
415 3sr0_A Adenylate kinase; phosp 61.0 5.3 0.00018 33.3 3.0 18 66-83 2-19 (206)
416 2k0z_A Uncharacterized protein 60.8 15 0.0005 26.8 5.1 38 270-307 54-91 (110)
417 1cke_A CK, MSSA, protein (cyti 60.8 5.1 0.00017 33.7 3.0 18 65-82 6-23 (227)
418 4a74_A DNA repair and recombin 60.7 3.9 0.00013 34.5 2.2 19 63-81 24-42 (231)
419 3k1j_A LON protease, ATP-depen 60.7 7.3 0.00025 38.6 4.4 25 57-81 53-77 (604)
420 3kta_A Chromosome segregation 60.6 5.3 0.00018 32.2 2.9 15 66-80 28-42 (182)
421 1gvn_B Zeta; postsegregational 60.6 3.5 0.00012 36.5 1.9 16 66-81 35-50 (287)
422 1aky_A Adenylate kinase; ATP:A 60.5 5.9 0.0002 33.2 3.3 18 65-82 5-22 (220)
423 2qt1_A Nicotinamide riboside k 60.5 2.8 9.4E-05 34.9 1.2 19 62-80 19-37 (207)
424 1nij_A Hypothetical protein YJ 60.4 6.2 0.00021 35.4 3.6 15 66-80 6-20 (318)
425 2chq_A Replication factor C sm 60.3 8.5 0.00029 34.2 4.5 16 66-81 40-55 (319)
426 1m7g_A Adenylylsulfate kinase; 60.2 6.8 0.00023 32.6 3.6 32 50-82 12-43 (211)
427 1nks_A Adenylate kinase; therm 60.0 5.1 0.00017 32.5 2.7 16 66-81 3-18 (194)
428 1zak_A Adenylate kinase; ATP:A 59.9 5.7 0.0002 33.3 3.1 18 65-82 6-23 (222)
429 1qf9_A UMP/CMP kinase, protein 59.7 5.1 0.00018 32.5 2.7 17 66-82 8-24 (194)
430 4e22_A Cytidylate kinase; P-lo 59.7 5.6 0.00019 34.3 3.0 19 63-81 26-44 (252)
431 3tif_A Uncharacterized ABC tra 59.7 4.3 0.00015 34.7 2.3 18 62-79 29-46 (235)
432 1np6_A Molybdopterin-guanine d 59.5 10 0.00036 30.5 4.4 23 66-89 8-30 (174)
433 2pt5_A Shikimate kinase, SK; a 59.5 6 0.0002 31.3 3.0 17 66-82 2-18 (168)
434 3c8u_A Fructokinase; YP_612366 59.3 4.7 0.00016 33.5 2.4 17 64-80 22-38 (208)
435 2i3b_A HCR-ntpase, human cance 59.3 6.7 0.00023 32.1 3.3 41 172-215 103-145 (189)
436 1g41_A Heat shock protein HSLU 59.2 5.7 0.0002 37.5 3.2 18 64-81 50-67 (444)
437 3umf_A Adenylate kinase; rossm 59.1 5.7 0.0002 33.4 2.9 18 65-82 30-47 (217)
438 2cdn_A Adenylate kinase; phosp 59.1 5.8 0.0002 32.6 3.0 18 65-82 21-38 (201)
439 2plr_A DTMP kinase, probable t 59.1 5.3 0.00018 33.0 2.8 19 64-82 4-22 (213)
440 2yjt_D ATP-dependent RNA helic 63.5 2 6.8E-05 34.5 0.0 73 100-182 30-106 (170)
441 2ipc_A Preprotein translocase 58.9 32 0.0011 35.6 8.5 55 270-330 118-176 (997)
442 2v3c_C SRP54, signal recogniti 58.8 6.4 0.00022 37.1 3.5 18 66-83 101-118 (432)
443 2oca_A DAR protein, ATP-depend 58.7 1.2E+02 0.0041 28.8 12.8 74 102-184 349-426 (510)
444 3qf7_A RAD50; ABC-ATPase, ATPa 58.5 6.2 0.00021 36.3 3.3 16 66-81 25-40 (365)
445 2ce7_A Cell division protein F 58.4 5.6 0.00019 38.0 3.0 53 24-81 10-66 (476)
446 1q57_A DNA primase/helicase; d 58.3 8.1 0.00028 37.3 4.2 51 62-120 240-290 (503)
447 1tq1_A AT5G66040, senescence-a 58.2 6.1 0.00021 29.9 2.7 38 270-307 80-118 (129)
448 3fmo_B ATP-dependent RNA helic 58.1 8.9 0.0003 34.1 4.2 69 273-348 163-243 (300)
449 1jjv_A Dephospho-COA kinase; P 57.9 6 0.00021 32.7 2.9 15 67-81 5-19 (206)
450 2whx_A Serine protease/ntpase/ 57.9 23 0.00079 35.1 7.5 68 100-179 355-423 (618)
451 1nkt_A Preprotein translocase 57.8 35 0.0012 35.2 8.7 55 270-330 150-208 (922)
452 2pez_A Bifunctional 3'-phospho 57.7 6.1 0.00021 31.8 2.8 18 64-81 5-22 (179)
453 2jaq_A Deoxyguanosine kinase; 57.6 6.2 0.00021 32.4 2.9 16 66-81 2-17 (205)
454 2og2_A Putative signal recogni 57.4 10 0.00035 34.7 4.5 16 66-81 159-174 (359)
455 2cbz_A Multidrug resistance-as 57.2 5 0.00017 34.3 2.3 18 62-79 29-46 (237)
456 2f1r_A Molybdopterin-guanine d 57.1 4.4 0.00015 32.6 1.8 16 66-81 4-19 (171)
457 3gx8_A Monothiol glutaredoxin- 56.9 48 0.0016 24.6 7.5 55 262-316 5-68 (121)
458 3asz_A Uridine kinase; cytidin 56.8 5.7 0.0002 32.9 2.6 17 65-81 7-23 (211)
459 1ukz_A Uridylate kinase; trans 56.5 6.7 0.00023 32.3 2.9 16 66-81 17-32 (203)
460 1e4v_A Adenylate kinase; trans 56.5 6.1 0.00021 32.9 2.7 17 66-82 2-18 (214)
461 3auy_A DNA double-strand break 56.4 4.7 0.00016 37.2 2.1 15 66-80 27-41 (371)
462 1sgw_A Putative ABC transporte 56.3 5.6 0.00019 33.4 2.4 19 62-80 33-51 (214)
463 2if2_A Dephospho-COA kinase; a 56.2 6.5 0.00022 32.4 2.8 16 66-81 3-18 (204)
464 3l9o_A ATP-dependent RNA helic 56.1 16 0.00056 39.1 6.4 67 269-346 224-296 (1108)
465 3dkp_A Probable ATP-dependent 56.0 11 0.00038 32.0 4.4 74 272-348 98-183 (245)
466 1qxn_A SUD, sulfide dehydrogen 56.0 8.9 0.0003 29.4 3.3 40 268-307 78-118 (137)
467 1j8m_F SRP54, signal recogniti 55.8 9.9 0.00034 33.7 4.0 18 66-83 100-117 (297)
468 3be4_A Adenylate kinase; malar 55.7 7.3 0.00025 32.6 3.1 18 65-82 6-23 (217)
469 2wwf_A Thymidilate kinase, put 55.6 6.8 0.00023 32.4 2.8 20 63-82 9-28 (212)
470 1uf9_A TT1252 protein; P-loop, 55.4 6.7 0.00023 32.2 2.7 16 66-81 10-25 (203)
471 3p32_A Probable GTPase RV1496/ 55.4 1.2E+02 0.0041 27.4 12.9 16 66-81 81-96 (355)
472 1nn5_A Similar to deoxythymidy 55.1 7.5 0.00026 32.2 3.0 19 64-82 9-27 (215)
473 3nh6_A ATP-binding cassette SU 55.1 5.8 0.0002 35.4 2.4 18 63-80 79-96 (306)
474 2vli_A Antibiotic resistance p 54.8 6.3 0.00021 31.7 2.4 19 64-82 5-23 (183)
475 2pbr_A DTMP kinase, thymidylat 54.6 7.4 0.00025 31.6 2.9 16 67-82 3-18 (195)
476 2z0m_A 337AA long hypothetical 54.6 37 0.0013 30.0 7.9 70 272-346 56-135 (337)
477 2pze_A Cystic fibrosis transme 54.6 5.9 0.0002 33.6 2.2 19 62-80 32-50 (229)
478 2fsx_A RV0390, COG0607: rhodan 54.5 13 0.00046 28.8 4.2 37 271-307 79-116 (148)
479 3qks_A DNA double-strand break 54.5 9.2 0.00031 31.7 3.4 16 66-81 25-40 (203)
480 3a4m_A L-seryl-tRNA(SEC) kinas 54.4 5.8 0.0002 34.4 2.3 17 66-82 6-22 (260)
481 3gfo_A Cobalt import ATP-bindi 54.2 5.8 0.0002 34.8 2.2 19 62-80 32-50 (275)
482 2ff7_A Alpha-hemolysin translo 54.0 5.9 0.0002 34.1 2.2 19 62-80 33-51 (247)
483 2ghi_A Transport protein; mult 53.9 6.1 0.00021 34.3 2.3 19 62-80 44-62 (260)
484 2xb4_A Adenylate kinase; ATP-b 53.8 7.8 0.00027 32.6 2.9 17 66-82 2-18 (223)
485 2xxa_A Signal recognition part 53.6 14 0.00047 34.9 4.8 18 66-83 102-119 (433)
486 4anj_A Unconventional myosin-V 53.6 13 0.00044 39.3 5.0 74 9-83 81-163 (1052)
487 3eiq_A Eukaryotic initiation f 53.5 31 0.0011 31.7 7.4 72 271-345 107-188 (414)
488 1htw_A HI0065; nucleotide-bind 53.4 7.5 0.00026 30.8 2.6 19 62-80 31-49 (158)
489 2vhj_A Ntpase P4, P4; non- hyd 53.4 6.7 0.00023 35.2 2.5 21 63-83 122-142 (331)
490 2z0h_A DTMP kinase, thymidylat 53.4 8.1 0.00028 31.5 2.9 16 67-82 3-18 (197)
491 2bbw_A Adenylate kinase 4, AK4 53.3 8 0.00027 33.1 3.0 17 64-80 27-43 (246)
492 3tqf_A HPR(Ser) kinase; transf 53.1 7.3 0.00025 31.4 2.4 20 63-82 15-34 (181)
493 4gl2_A Interferon-induced heli 53.0 3.1 0.00011 42.0 0.3 70 273-346 57-142 (699)
494 4g1u_C Hemin import ATP-bindin 53.0 6.2 0.00021 34.4 2.2 18 63-80 36-53 (266)
495 2grj_A Dephospho-COA kinase; T 52.9 8.5 0.00029 31.6 2.9 19 67-85 15-33 (192)
496 3pxi_A Negative regulator of g 52.2 10 0.00035 38.7 4.0 31 55-85 190-222 (758)
497 2pcj_A ABC transporter, lipopr 52.2 6.2 0.00021 33.3 2.0 21 61-81 27-47 (224)
498 3nhv_A BH2092 protein; alpha-b 52.0 9.5 0.00033 29.5 2.9 36 271-306 71-108 (144)
499 1g6h_A High-affinity branched- 52.0 6.6 0.00023 34.0 2.2 21 61-81 30-50 (257)
500 3cmu_A Protein RECA, recombina 51.8 13 0.00043 42.3 4.8 39 61-107 1078-1116(2050)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=1.1e-64 Score=492.11 Aligned_cols=390 Identities=42% Similarity=0.714 Sum_probs=353.7
Q ss_pred cCCeEEecCCCCCcccccccCCCCHHHHHHHHHCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhc
Q 013176 12 RREITVEGHDVPRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSA 91 (448)
Q Consensus 12 ~~~~~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~ 91 (448)
...+.+.|.+.|.|+.+|+++++++.+.+.++.+||..|+|+|+++++.+++++++++++|||||||++|++|++..+..
T Consensus 41 ~~~~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~ 120 (434)
T 2db3_A 41 NIPVKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLE 120 (434)
T ss_dssp GSCEEEESSSCCCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred CceeEecCCCCCCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHh
Confidence 34688899999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccC
Q 013176 92 QPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTN 171 (448)
Q Consensus 92 ~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~ 171 (448)
........++++||++||++|+.|+.++++++....++++..++|+.....+...+..+++|+|+||++|.+++.+....
T Consensus 121 ~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~ 200 (434)
T 2db3_A 121 DPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFIT 200 (434)
T ss_dssp SCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCC
T ss_pred cccccccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcc
Confidence 54333345788999999999999999999999888888999999999888888888889999999999999999988888
Q ss_pred CCCccEEEEecccccccCCCHHHHHHHHHHc--CCCcceEEEeccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceE
Q 013176 172 LRRVTYLVLDEADRMLDMGFEPQIRKIVTQI--RPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQV 249 (448)
Q Consensus 172 ~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~--~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (448)
+.+++++|+||||++.+++|...+..++..+ .+..|++++|||++..+..++..++.++..+...... .....+.+.
T Consensus 201 l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~-~~~~~i~~~ 279 (434)
T 2db3_A 201 FEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVG-GACSDVKQT 279 (434)
T ss_dssp CTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTT-CCCTTEEEE
T ss_pred cccCCeEEEccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEecccc-ccccccceE
Confidence 8999999999999999999999999998875 5778999999999999999999988888877765543 334456667
Q ss_pred EEEecchhHHHHHHHHHHhhhcCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEe
Q 013176 250 VEVVTEAEKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTAT 329 (448)
Q Consensus 250 ~~~~~~~~~~~~l~~~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T 329 (448)
+.......+...+.+++.+. ..++||||++++.|+.+++.|++.++++..+||++++.+|..+++.|++|+.+|||||
T Consensus 280 ~~~~~~~~k~~~l~~~l~~~--~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT 357 (434)
T 2db3_A 280 IYEVNKYAKRSKLIEILSEQ--ADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIAT 357 (434)
T ss_dssp EEECCGGGHHHHHHHHHHHC--CTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEEC
T ss_pred EEEeCcHHHHHHHHHHHHhC--CCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEc
Confidence 77777888888898888774 3459999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCccEEEEcCCCCChhhhhhcccccCCCCCCceEEEEec-CCChHHHHHHHHHHHHhCCCCcHHHHh
Q 013176 330 DVAARGLDVKDIKCVVNYDFPTSLEDYVHRIGRTGRAGARGTAFTFFT-HSNAKFARDLIKILQEAGQIVSPALSG 404 (448)
Q Consensus 330 ~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~l~~ 404 (448)
+++++|+|+|++++||++|+|.++.+|+||+||+||.|+.|.+++|++ ..+......+.+.+.+.++.++++|.+
T Consensus 358 ~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~~~~~~vp~~l~~ 433 (434)
T 2db3_A 358 SVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVPDFLRT 433 (434)
T ss_dssp GGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHHHTTCCCCGGGC-
T ss_pred hhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHHHHcCCCCCHHHHh
Confidence 999999999999999999999999999999999999999999999998 457788999999999999999998754
No 2
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=6.6e-61 Score=465.58 Aligned_cols=394 Identities=45% Similarity=0.732 Sum_probs=349.3
Q ss_pred CeEEecCCCCCcccccccCCCCHHHHHHHHHCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCC
Q 013176 14 EITVEGHDVPRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQP 93 (448)
Q Consensus 14 ~~~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~ 93 (448)
.+.+.|...|.|..+|+++++++.+.+.+..+||..|+|+|.++++.++.++++++.+|||+|||++|++|++..+....
T Consensus 2 ~~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~ 81 (417)
T 2i4i_A 2 MVEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDG 81 (417)
T ss_dssp CEEEESTTCCCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHC
T ss_pred CcccCCCcCCcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhcc
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999998875432
Q ss_pred Cc-------------cCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHH
Q 013176 94 RL-------------VQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGR 160 (448)
Q Consensus 94 ~~-------------~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~ 160 (448)
.. .....++++|++||++|+.|+.+.++++....++++..++|+.........+..+++|+|+||++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~ 161 (417)
T 2i4i_A 82 PGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGR 161 (417)
T ss_dssp CCHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHH
T ss_pred ccchhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHH
Confidence 10 11224689999999999999999999998888899999999988888888888889999999999
Q ss_pred HHHHHHccccCCCCccEEEEecccccccCCCHHHHHHHHHHc--CC--CcceEEEeccCchHHHHHHHHHcCCCeEEEeC
Q 013176 161 LIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQI--RP--DRQTLYWSATWPREVETLARQFLRNPYKVIIG 236 (448)
Q Consensus 161 l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~--~~--~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~ 236 (448)
|.+.+......+.++++||+||+|++.++++...+..+.... ++ ..+++++|||+++.+..+...++.++......
T Consensus 162 l~~~l~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 241 (417)
T 2i4i_A 162 LVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVG 241 (417)
T ss_dssp HHHHHHTTSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC
T ss_pred HHHHHHcCCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeC
Confidence 999998887788899999999999999999999998888743 22 57899999999999888888888888766654
Q ss_pred CcccccccCcceEEEEecchhHHHHHHHHHHhhhcCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHH
Q 013176 237 SLELKANQSINQVVEVVTEAEKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLA 316 (448)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~ 316 (448)
... .....+.+.+.......+...+.++++....++++||||++++.++.+++.|++.++.+..+|++++.++|.++++
T Consensus 242 ~~~-~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~ 320 (417)
T 2i4i_A 242 RVG-STSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALH 320 (417)
T ss_dssp -----CCSSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH
T ss_pred CCC-CCccCceEEEEEeccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHH
Confidence 433 3334456666667778888888898888666789999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCEEEEeccccCCCCCCCccEEEEcCCCCChhhhhhcccccCCCCCCceEEEEecCCChHHHHHHHHHHHHhCC
Q 013176 317 EFRSGRSPIMTATDVAARGLDVKDIKCVVNYDFPTSLEDYVHRIGRTGRAGARGTAFTFFTHSNAKFARDLIKILQEAGQ 396 (448)
Q Consensus 317 ~f~~g~~~vLv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~ 396 (448)
.|++|+.+|||||+++++|+|+|++++||++++|.++.+|+||+||+||.|+.|.+++++++.+....+.+.+.+.+..+
T Consensus 321 ~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~ 400 (417)
T 2i4i_A 321 QFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQ 400 (417)
T ss_dssp HHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHHHHTTC
T ss_pred HHHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHhhhhh
Q 013176 397 IVSPALSGLARS 408 (448)
Q Consensus 397 ~~~~~l~~~~~~ 408 (448)
.++..+..++..
T Consensus 401 ~~~~~l~~~~~~ 412 (417)
T 2i4i_A 401 EVPSWLENMAYE 412 (417)
T ss_dssp CCCHHHHHHHTC
T ss_pred cCCHHHHHHHHh
Confidence 999999888753
No 3
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=6.6e-58 Score=443.37 Aligned_cols=373 Identities=34% Similarity=0.570 Sum_probs=326.3
Q ss_pred cCCCCCcccccccCCCCHHHHHHHHHCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCC
Q 013176 19 GHDVPRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQG 98 (448)
Q Consensus 19 ~~~~~~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~ 98 (448)
...-+.+..+|+++++++.+.+.++.+||..|+|+|+++++.+++++++++.+|||+|||++|+++++..+....
T Consensus 29 ~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~----- 103 (410)
T 2j0s_A 29 TSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQV----- 103 (410)
T ss_dssp CCTTCCCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTS-----
T ss_pred CCCCccCCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhcc-----
Confidence 344456678999999999999999999999999999999999999999999999999999999999998765321
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEE
Q 013176 99 EGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYL 178 (448)
Q Consensus 99 ~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~i 178 (448)
.+.++||++|+++|+.|+.+.+++++...++.+...+++.........+..+++|+|+||++|.+.+......+.++++|
T Consensus 104 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~v 183 (410)
T 2j0s_A 104 RETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKML 183 (410)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEE
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEE
Confidence 26789999999999999999999999888899999999988878777777889999999999999998887788899999
Q ss_pred EEecccccccCCCHHHHHHHHHHcCCCcceEEEeccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceEEEEec-chh
Q 013176 179 VLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVT-EAE 257 (448)
Q Consensus 179 IvDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 257 (448)
|+||+|++.++++...+..+...+++..+++++|||+++....+...++.++..+....... ....+.+.+.... ...
T Consensus 184 ViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 262 (410)
T 2j0s_A 184 VLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDEL-TLEGIKQFFVAVEREEW 262 (410)
T ss_dssp EEETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGC-SCTTEEEEEEEESSTTH
T ss_pred EEccHHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccc-cCCCceEEEEEeCcHHh
Confidence 99999999999999999999998888999999999999988877777887777665544332 2233444444443 444
Q ss_pred HHHHHHHHHHhhhcCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCC
Q 013176 258 KYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLD 337 (448)
Q Consensus 258 ~~~~l~~~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gid 337 (448)
+...+.+++... ...++||||++++.++.+++.|++.++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|
T Consensus 263 k~~~l~~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gid 341 (410)
T 2j0s_A 263 KFDTLCDLYDTL-TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLD 341 (410)
T ss_dssp HHHHHHHHHHHH-TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCC
T ss_pred HHHHHHHHHHhc-CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCC
Confidence 777788877664 3458999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccEEEEcCCCCChhhhhhcccccCCCCCCceEEEEecCCChHHHHHHHHHHHHhCCCC
Q 013176 338 VKDIKCVVNYDFPTSLEDYVHRIGRTGRAGARGTAFTFFTHSNAKFARDLIKILQEAGQIV 398 (448)
Q Consensus 338 i~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 398 (448)
+|++++||++++|++..+|+||+||+||.|+.|.+++++.+.+...++.+.+++......+
T Consensus 342 i~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 402 (410)
T 2j0s_A 342 VPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEM 402 (410)
T ss_dssp CTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEEC
T ss_pred cccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCCCceec
Confidence 9999999999999999999999999999999999999999999988888877765444333
No 4
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=1.7e-56 Score=432.03 Aligned_cols=370 Identities=28% Similarity=0.511 Sum_probs=321.9
Q ss_pred CCcccccccCCCCHHHHHHHHHCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCce
Q 013176 23 PRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPI 102 (448)
Q Consensus 23 ~~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~ 102 (448)
+.+..+|+++++++.+.+.+..+||..|+|+|.++++.+++++++++.+|||+|||++|+++++..+.... .+.+
T Consensus 17 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~-----~~~~ 91 (400)
T 1s2m_A 17 NTKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKL-----NKIQ 91 (400)
T ss_dssp ----CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTS-----CSCC
T ss_pred ccccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhcc-----CCcc
Confidence 34567899999999999999999999999999999999999999999999999999999999998865431 2567
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEec
Q 013176 103 VLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDE 182 (448)
Q Consensus 103 vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE 182 (448)
++|++|+++|+.|+.+.++++....++++...+++.........+...++|+|+||++|.+.+......+.++++||+||
T Consensus 92 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE 171 (400)
T 1s2m_A 92 ALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDE 171 (400)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEES
T ss_pred EEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeC
Confidence 99999999999999999999988888999999998877777677778899999999999998888777888999999999
Q ss_pred ccccccCCCHHHHHHHHHHcCCCcceEEEeccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceEEEEecchhHHHHH
Q 013176 183 ADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRL 262 (448)
Q Consensus 183 ~h~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 262 (448)
||++.+..+...+..+...+++..+++++|||++..........+..+........ .....+.+.........+...+
T Consensus 172 aH~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~~~l 249 (400)
T 1s2m_A 172 ADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEE--LTLKGITQYYAFVEERQKLHCL 249 (400)
T ss_dssp HHHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSS--CBCTTEEEEEEECCGGGHHHHH
T ss_pred chHhhhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccc--cccCCceeEEEEechhhHHHHH
Confidence 99998877788888888888888999999999999988888888887766543322 2333455666666677787777
Q ss_pred HHHHHhhhcCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCCCcc
Q 013176 263 IKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVKDIK 342 (448)
Q Consensus 263 ~~~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~ 342 (448)
..++... ..+++||||++++.++.+++.|++.++.+..+|++++.++|..+++.|++|+.+|||||+++++|+|+|+++
T Consensus 250 ~~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~ 328 (400)
T 1s2m_A 250 NTLFSKL-QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVN 328 (400)
T ss_dssp HHHHHHS-CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEE
T ss_pred HHHHhhc-CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCC
Confidence 7777653 567999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCChhhhhhcccccCCCCCCceEEEEecCCChHHHHHHHHHHHHhCCCCcH
Q 013176 343 CVVNYDFPTSLEDYVHRIGRTGRAGARGTAFTFFTHSNAKFARDLIKILQEAGQIVSP 400 (448)
Q Consensus 343 ~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 400 (448)
+||++++|+++.+|+||+||+||.|+.|.+++++++.+...++.+.+.+...-..++.
T Consensus 329 ~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~ 386 (400)
T 1s2m_A 329 VVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPA 386 (400)
T ss_dssp EEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEECCS
T ss_pred EEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCCcccccc
Confidence 9999999999999999999999999999999999999988888877766544444443
No 5
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=5.1e-57 Score=437.83 Aligned_cols=380 Identities=31% Similarity=0.546 Sum_probs=315.4
Q ss_pred cCCCCCcccccccCCCCHHHHHHHHHCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCC
Q 013176 19 GHDVPRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQG 98 (448)
Q Consensus 19 ~~~~~~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~ 98 (448)
....+.+..+|+++++++.+.+.++.+||..|+++|+++++.++.++++++.+|||+|||++|+++++..+....
T Consensus 32 ~~~~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~----- 106 (414)
T 3eiq_A 32 ESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDL----- 106 (414)
T ss_dssp CCCCCCCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTS-----
T ss_pred CCCccchhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcC-----
Confidence 345556678999999999999999999999999999999999999999999999999999999999998875532
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHHHHh-cCCcEEEEccHHHHHHHHccccCCCCccE
Q 013176 99 EGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLR-RGVEIVIATPGRLIDMLEAQHTNLRRVTY 177 (448)
Q Consensus 99 ~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~~~ 177 (448)
.+.+++|++|+++|+.|+.+.++++....+..+....++.........+. ..++|+|+||++|.+.+......+.++++
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~ 186 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKM 186 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCE
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcE
Confidence 26679999999999999999999998888889998898887777766665 67899999999999999888778888999
Q ss_pred EEEecccccccCCCHHHHHHHHHHcCCCcceEEEeccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceEEEEecchh
Q 013176 178 LVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAE 257 (448)
Q Consensus 178 iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (448)
||+||||++.++++...+..++..+++..+++++|||++.........++.++..+...............+........
T Consensus 187 vViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (414)
T 3eiq_A 187 FVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEW 266 (414)
T ss_dssp EEECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTT
T ss_pred EEEECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHh
Confidence 99999999999999999999999998999999999999999888888888888776655444333333333333334455
Q ss_pred HHHHHHHHHHhhhcCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCC
Q 013176 258 KYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLD 337 (448)
Q Consensus 258 ~~~~l~~~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gid 337 (448)
+...+.+++... ..+++||||++++.++.+++.|++.++.+..+|++++.++|..+++.|++|+.+|||||+++++|+|
T Consensus 267 ~~~~l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gid 345 (414)
T 3eiq_A 267 KLDTLCDLYETL-TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGID 345 (414)
T ss_dssp HHHHHHHHHHSS-CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CC
T ss_pred HHHHHHHHHHhC-CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCC
Confidence 777777777664 4568999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccEEEEcCCCCChhhhhhcccccCCCCCCceEEEEecCCChHHHHHHHHHHHHhCCCCcHHHHh
Q 013176 338 VKDIKCVVNYDFPTSLEDYVHRIGRTGRAGARGTAFTFFTHSNAKFARDLIKILQEAGQIVSPALSG 404 (448)
Q Consensus 338 i~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~ 404 (448)
+|++++||++++|.+..+|+||+||+||.|+.|.+++++++.+...++.+.+++......++..+.+
T Consensus 346 ip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (414)
T 3eiq_A 346 VQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVAD 412 (414)
T ss_dssp GGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCCCEECCC----
T ss_pred ccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCCccccChhhhh
Confidence 9999999999999999999999999999999999999999999999998888877666666655543
No 6
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=1.5e-55 Score=424.34 Aligned_cols=360 Identities=27% Similarity=0.499 Sum_probs=313.7
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEE
Q 013176 27 RIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVL 106 (448)
Q Consensus 27 ~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil 106 (448)
.+|+++++++.+.+++..+||..|+|+|.++++.++.++++++.+|||+|||++|+++++..+.... .+.+++|+
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~-----~~~~~lil 82 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVT-----GQVSVLVM 82 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCT-----TCCCEEEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccC-----CCeeEEEE
Confidence 5699999999999999999999999999999999999999999999999999999999998865432 25689999
Q ss_pred cCcHHHHHHHHHHHHHhhcCC-CceEEEEEcCCCchHhHHHHhc-CCcEEEEccHHHHHHHHccccCCCCccEEEEeccc
Q 013176 107 APTRELAVQIQEEALKFGSRA-GIRSTCIYGGAPKGPQIRDLRR-GVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEAD 184 (448)
Q Consensus 107 ~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h 184 (448)
+|+++|+.|+.+.++++.... ++++..++|+.........+.. .++|+|+||++|...+......+.++++||+||||
T Consensus 83 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH 162 (391)
T 1xti_A 83 CHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECD 162 (391)
T ss_dssp CSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHH
T ss_pred CCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHH
Confidence 999999999999999987765 7888889988876666555544 47999999999999988877788899999999999
Q ss_pred ccccC-CCHHHHHHHHHHcCCCcceEEEeccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceEEEEecchhHHHHHH
Q 013176 185 RMLDM-GFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLI 263 (448)
Q Consensus 185 ~~~~~-~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 263 (448)
++.++ ++...+..++...++..+++++|||+++........++.++..+............+.+.+.......+...+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 242 (391)
T 1xti_A 163 KMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLF 242 (391)
T ss_dssp HHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHHHHHH
T ss_pred HHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHHHHHH
Confidence 99874 56777888888888889999999999999888999999888877765544344455666666677788888888
Q ss_pred HHHHhhhcCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCCCccE
Q 013176 264 KLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVKDIKC 343 (448)
Q Consensus 264 ~~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~ 343 (448)
+++... .++++||||++++.++.+++.|++.++.+..+|++++.++|..+++.|++|+.+|||||+++++|+|+|++++
T Consensus 243 ~~l~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~ 321 (391)
T 1xti_A 243 DLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNI 321 (391)
T ss_dssp HHHHHS-CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEE
T ss_pred HHHHhc-CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCE
Confidence 888764 5679999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCChhhhhhcccccCCCCCCceEEEEecCCCh-HHHHHHHHHHH
Q 013176 344 VVNYDFPTSLEDYVHRIGRTGRAGARGTAFTFFTHSNA-KFARDLIKILQ 392 (448)
Q Consensus 344 Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~-~~~~~l~~~~~ 392 (448)
||++++|+++.+|+||+||++|.|+.|.+++++.+.+. ...+.+.+.+.
T Consensus 322 Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~ 371 (391)
T 1xti_A 322 AFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFE 371 (391)
T ss_dssp EEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTT
T ss_pred EEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhc
Confidence 99999999999999999999999999999999987643 44555555443
No 7
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.2e-54 Score=412.54 Aligned_cols=355 Identities=37% Similarity=0.616 Sum_probs=313.1
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHhHHHHhhcC-CcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEE
Q 013176 26 IRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKG-RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVL 104 (448)
Q Consensus 26 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~~~-~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vl 104 (448)
..+|+++++++.+.+.++++||..|+|+|+++++.++++ +++++.+|||+|||++++++++..+... .+.+++
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~------~~~~~l 78 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN------NGIEAI 78 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS------SSCCEE
T ss_pred cCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhccc------CCCcEE
Confidence 357999999999999999999999999999999999988 6999999999999999999998876542 366899
Q ss_pred EEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEeccc
Q 013176 105 VLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEAD 184 (448)
Q Consensus 105 il~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h 184 (448)
|++|+++|+.|+.+.++++....++.+...+++.........+. .++|+|+||++|.+.+......+.+++++|+||+|
T Consensus 79 il~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah 157 (367)
T 1hv8_A 79 ILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFILDEAD 157 (367)
T ss_dssp EECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHH
T ss_pred EEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcccccCCEEEEeCch
Confidence 99999999999999999998877888988988887665555544 68999999999999988877778899999999999
Q ss_pred ccccCCCHHHHHHHHHHcCCCcceEEEeccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceEEEEecchhHHHHHHH
Q 013176 185 RMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIK 264 (448)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 264 (448)
.+.++++...+..++..+++..+++++|||+++........++.++....... ...+.+........++...+..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~ 232 (367)
T 1hv8_A 158 EMLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKI-----NANIEQSYVEVNENERFEALCR 232 (367)
T ss_dssp HHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCS-----SSSSEEEEEECCGGGHHHHHHH
T ss_pred HhhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecC-----CCCceEEEEEeChHHHHHHHHH
Confidence 99999889999999988888999999999999988888888777655544322 2245555666677788888887
Q ss_pred HHHhhhcCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCCCccEE
Q 013176 265 LLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVKDIKCV 344 (448)
Q Consensus 265 ~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~V 344 (448)
+++ ..+.++||||++++.++.+++.|++.++.+..+|++++.++|.++++.|++|+.+|||||+++++|+|+|++++|
T Consensus 233 ~l~--~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~V 310 (367)
T 1hv8_A 233 LLK--NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCV 310 (367)
T ss_dssp HHC--STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEE
T ss_pred HHh--cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEE
Confidence 776 356789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCChhhhhhcccccCCCCCCceEEEEecCCChHHHHHHHHHHHHh
Q 013176 345 VNYDFPTSLEDYVHRIGRTGRAGARGTAFTFFTHSNAKFARDLIKILQEA 394 (448)
Q Consensus 345 i~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~ 394 (448)
|++++|+++.+|.||+||++|.|+.|.+++++++.+....+.+.+.+...
T Consensus 311 i~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~ 360 (367)
T 1hv8_A 311 INYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLK 360 (367)
T ss_dssp EESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCC
T ss_pred EEecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999998888877665433
No 8
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=1.2e-56 Score=432.38 Aligned_cols=376 Identities=33% Similarity=0.555 Sum_probs=188.1
Q ss_pred CCCCCcccccccCCCCHHHHHHHHHCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCC
Q 013176 20 HDVPRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGE 99 (448)
Q Consensus 20 ~~~~~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~ 99 (448)
.....+..+|+++++++.+.+.+..+||..|+|+|+++++.+..++++++.+|||+|||++|+++++..+.... .
T Consensus 14 ~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~-----~ 88 (394)
T 1fuu_A 14 TNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSV-----K 88 (394)
T ss_dssp ESSCCCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTC-----C
T ss_pred hhcccccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccC-----C
Confidence 44567778899999999999999999999999999999999999999999999999999999999998875532 2
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEE
Q 013176 100 GPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLV 179 (448)
Q Consensus 100 ~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iI 179 (448)
+++++|++|+++|+.|+.+.+.++....++++..++|+.........+. .++|+|+||++|.+.+......+.+++++|
T Consensus 89 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~vI 167 (394)
T 1fuu_A 89 APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFI 167 (394)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCCTTCCEEE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcchhhCcEEE
Confidence 6689999999999999999999998888899999998877655544443 679999999999999888777788999999
Q ss_pred EecccccccCCCHHHHHHHHHHcCCCcceEEEeccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceEEEEecchhHH
Q 013176 180 LDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKY 259 (448)
Q Consensus 180 vDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (448)
+||+|++.++++...+..+...+++..+++++|||+++........++..+..+...............+........+.
T Consensus 168 iDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (394)
T 1fuu_A 168 LDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKY 247 (394)
T ss_dssp EETHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC----------------------
T ss_pred EEChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhhHH
Confidence 99999999988999999999999899999999999999988888888888887766544322222222222222223355
Q ss_pred HHHHHHHHhhhcCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCC
Q 013176 260 NRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVK 339 (448)
Q Consensus 260 ~~l~~~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~ 339 (448)
..+.++++.. ..+++||||++++.++.+++.|++.++.+..+|++++.++|..+++.|++|+.+|||||+++++|+|+|
T Consensus 248 ~~l~~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~ 326 (394)
T 1fuu_A 248 ECLTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQ 326 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhcC-CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcc
Confidence 5555555543 456899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEcCCCCChhhhhhcccccCCCCCCceEEEEecCCChHHHHHHHHHHHHhCCCCcHHH
Q 013176 340 DIKCVVNYDFPTSLEDYVHRIGRTGRAGARGTAFTFFTHSNAKFARDLIKILQEAGQIVSPAL 402 (448)
Q Consensus 340 ~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l 402 (448)
++++||++++|+++.+|+||+||++|.|+.|.+++++.+.+....+.+.+.+......++..+
T Consensus 327 ~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 389 (394)
T 1fuu_A 327 QVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDI 389 (394)
T ss_dssp ---------------------------------------------------------------
T ss_pred cCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCCcccccCcch
Confidence 999999999999999999999999999999999999999998888888777766655555443
No 9
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=3.6e-54 Score=415.14 Aligned_cols=356 Identities=31% Similarity=0.533 Sum_probs=301.6
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHHhHHHHhhcC--CcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCce
Q 013176 25 PIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKG--RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPI 102 (448)
Q Consensus 25 p~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~~~--~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~ 102 (448)
...+|+++++++.+.+.+..+||..|+|+|.++++.++.+ +++++.+|||+|||++|+++++..+.... .+++
T Consensus 3 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~-----~~~~ 77 (395)
T 3pey_A 3 MAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPED-----ASPQ 77 (395)
T ss_dssp -CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTC-----CSCC
T ss_pred cccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCC-----CCcc
Confidence 4578999999999999999999999999999999999998 89999999999999999999998875532 3668
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEec
Q 013176 103 VLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDE 182 (448)
Q Consensus 103 vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE 182 (448)
++|++|+++|+.|+.+.++++....++.+....++...... ..+++|+|+||++|.+.+......+.++++||+||
T Consensus 78 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDE 153 (395)
T 3pey_A 78 AICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDE 153 (395)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTS----CBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEET
T ss_pred EEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhc----cCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEC
Confidence 99999999999999999999988778888877776543222 23689999999999999988877889999999999
Q ss_pred cccccc-CCCHHHHHHHHHHcCCCcceEEEeccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceEEEEe-cchhHHH
Q 013176 183 ADRMLD-MGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVV-TEAEKYN 260 (448)
Q Consensus 183 ~h~~~~-~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 260 (448)
||++.+ .++...+..+...+++..+++++|||+++.+..+...++.++............ ..+.+..... ....+..
T Consensus 154 ah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 232 (395)
T 3pey_A 154 ADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNV-DAIKQLYMDCKNEADKFD 232 (395)
T ss_dssp HHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSC-TTEEEEEEECSSHHHHHH
T ss_pred hhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEcccccccc-ccccEEEEEcCchHHHHH
Confidence 999887 567788888888888899999999999999999988888887776655444332 2333333333 4445555
Q ss_pred HHHHHHHhhhcCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCCC
Q 013176 261 RLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVKD 340 (448)
Q Consensus 261 ~l~~~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~ 340 (448)
.+..++.. ..++++||||++++.++.+++.|++.++.+..+|++++.++|.++++.|++|+.+|||||+++++|+|+|+
T Consensus 233 ~l~~~~~~-~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~ 311 (395)
T 3pey_A 233 VLTELYGL-MTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPT 311 (395)
T ss_dssp HHHHHHTT-TTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTT
T ss_pred HHHHHHHh-ccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCccc
Confidence 55555544 35679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEcCCCC------ChhhhhhcccccCCCCCCceEEEEecCCCh-HHHHHHHHHH
Q 013176 341 IKCVVNYDFPT------SLEDYVHRIGRTGRAGARGTAFTFFTHSNA-KFARDLIKIL 391 (448)
Q Consensus 341 ~~~Vi~~~~p~------s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~-~~~~~l~~~~ 391 (448)
+++||++++|+ ++.+|+||+||++|.|+.|.+++++...+. ...+.+.+.+
T Consensus 312 ~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~ 369 (395)
T 3pey_A 312 VSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYF 369 (395)
T ss_dssp EEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHT
T ss_pred CCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHh
Confidence 99999999998 999999999999999999999999986543 3444444433
No 10
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=3.7e-54 Score=417.49 Aligned_cols=364 Identities=27% Similarity=0.455 Sum_probs=305.2
Q ss_pred CCcccccccCCCCHHHHHHHHHCCCCCCcHHHHhHHHHhhcC--CcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCC
Q 013176 23 PRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKG--RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEG 100 (448)
Q Consensus 23 ~~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~~~--~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~ 100 (448)
+.+..+|+++++++.+.+.++.+||..|+|+|.++++.++.+ +++++.+|||+|||++|+++++..+.... .+
T Consensus 21 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~-----~~ 95 (412)
T 3fht_A 21 LYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN-----KY 95 (412)
T ss_dssp TCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTS-----CS
T ss_pred ccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcC-----CC
Confidence 355789999999999999999999999999999999999987 89999999999999999999998876532 25
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhhcCC-CceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHc-cccCCCCccEE
Q 013176 101 PIVLVLAPTRELAVQIQEEALKFGSRA-GIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEA-QHTNLRRVTYL 178 (448)
Q Consensus 101 ~~vlil~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~-~~~~~~~~~~i 178 (448)
++++|++|+++|+.|+.+.++++.... ++.+....++...... ....++|+|+||++|.+.+.. ....+.++++|
T Consensus 96 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~i 172 (412)
T 3fht_A 96 PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVF 172 (412)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEE
T ss_pred CCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh---hcCCCCEEEECchHHHHHHHhcCCcChhhCcEE
Confidence 689999999999999999999987654 5677777766544322 134579999999999998865 45567889999
Q ss_pred EEeccccccc-CCCHHHHHHHHHHcCCCcceEEEeccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceEEEE-ecch
Q 013176 179 VLDEADRMLD-MGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEV-VTEA 256 (448)
Q Consensus 179 IvDE~h~~~~-~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 256 (448)
|+||||++.+ .++...+..+...+++..+++++|||+++....+...++.++..+.......... .+.+.... ....
T Consensus 173 ViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 251 (412)
T 3fht_A 173 VLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLD-TIKQYYVLCSSRD 251 (412)
T ss_dssp EEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCT-TEEEEEEECSSHH
T ss_pred EEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeecccccccc-CceEEEEEcCChH
Confidence 9999999887 5678888888888888999999999999999999999988887766554443333 33333333 3445
Q ss_pred hHHHHHHHHHHhhhcCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCC
Q 013176 257 EKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGL 336 (448)
Q Consensus 257 ~~~~~l~~~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gi 336 (448)
.+...+..++... .+.++||||++++.++.+++.|.+.++.+..+|++++.++|..+++.|++|+.+|||||+++++|+
T Consensus 252 ~~~~~l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gi 330 (412)
T 3fht_A 252 EKFQALCNLYGAI-TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGI 330 (412)
T ss_dssp HHHHHHHHHHHHH-SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSC
T ss_pred HHHHHHHHHHhhc-CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCC
Confidence 6777777776653 456899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEcCCCC------ChhhhhhcccccCCCCCCceEEEEecCCC-hHHHHHHHHHHHHhCC
Q 013176 337 DVKDIKCVVNYDFPT------SLEDYVHRIGRTGRAGARGTAFTFFTHSN-AKFARDLIKILQEAGQ 396 (448)
Q Consensus 337 di~~~~~Vi~~~~p~------s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~-~~~~~~l~~~~~~~~~ 396 (448)
|+|++++||++++|+ +..+|+||+||+||.|+.|.+++++++.+ ...++.+.+.+.....
T Consensus 331 dip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~ 397 (412)
T 3fht_A 331 DVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIE 397 (412)
T ss_dssp CCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCCE
T ss_pred CccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCccc
Confidence 999999999999994 67899999999999999999999998764 5566666665544333
No 11
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=1.3e-53 Score=429.54 Aligned_cols=367 Identities=30% Similarity=0.477 Sum_probs=299.4
Q ss_pred CCcccccccCC----CCHHHHHHHHHCCCCCCcHHHHhHHHHhh--cCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCcc
Q 013176 23 PRPIRIFQEAN----FPDYCLEVIAKLGFVEPTPIQAQGWPMAL--KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLV 96 (448)
Q Consensus 23 ~~p~~~~~~~~----l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~--~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~ 96 (448)
+.+..+|+++. +++.+.+++..+||..|+|+|.++++.++ .++++++.+|||+|||++|++|++..+......
T Consensus 13 ~~~~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~- 91 (579)
T 3sqw_A 13 NSKEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD- 91 (579)
T ss_dssp SCCCCCHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS-
T ss_pred CCCCcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhcccc-
Confidence 33444555543 99999999999999999999999999999 678999999999999999999999988764321
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHHHHhhc----CCCceEEEEEcCCCchHhHHHHh-cCCcEEEEccHHHHHHHHcc-cc
Q 013176 97 QGEGPIVLVLAPTRELAVQIQEEALKFGS----RAGIRSTCIYGGAPKGPQIRDLR-RGVEIVIATPGRLIDMLEAQ-HT 170 (448)
Q Consensus 97 ~~~~~~vlil~P~~~L~~q~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~iiv~T~~~l~~~~~~~-~~ 170 (448)
...++++||++||++|+.|+.+.++++.. ...+.+..+.++.........+. ..++|+|+||++|.+++... ..
T Consensus 92 ~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~ 171 (579)
T 3sqw_A 92 SQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNK 171 (579)
T ss_dssp STTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHH
T ss_pred ccCCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhcccc
Confidence 22357899999999999999999998753 23467888888887777766664 47899999999999888764 34
Q ss_pred CCCCccEEEEecccccccCCCHHHHHHHHHHcC-------CCcceEEEeccCchHHHHHHHHHcCCCeEEEeCCcccc--
Q 013176 171 NLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIR-------PDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELK-- 241 (448)
Q Consensus 171 ~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~-------~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 241 (448)
.+..+++||+||||++++++|...+..+...++ +..+++++|||+++.+..++..++..+...........
T Consensus 172 ~~~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~ 251 (579)
T 3sqw_A 172 FFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEP 251 (579)
T ss_dssp HCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSC
T ss_pred ccccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCcccc
Confidence 678899999999999999999998888876653 26689999999999988888888888776655432222
Q ss_pred -cccCcceEEEEecc-hhHH----HHHHHHHHhhhcCCcEEEEecchhHHHHHHHHHHhC---CCCeEEEcCCCCHHHHH
Q 013176 242 -ANQSINQVVEVVTE-AEKY----NRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMD---GWPALSIHGDKNQSERD 312 (448)
Q Consensus 242 -~~~~~~~~~~~~~~-~~~~----~~l~~~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~r~ 312 (448)
....+.+....... .... ..+...+.....+.++||||+++..++.+++.|++. ++.+..+|++++..+|.
T Consensus 252 ~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~ 331 (579)
T 3sqw_A 252 EAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRT 331 (579)
T ss_dssp SSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHH
T ss_pred ccccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHH
Confidence 12223333333322 2222 233333433345779999999999999999999886 88999999999999999
Q ss_pred HHHHHHhcCCCCEEEEeccccCCCCCCCccEEEEcCCCCChhhhhhcccccCCCCCCceEEEEecCCChHHHHHHHHH
Q 013176 313 WVLAEFRSGRSPIMTATDVAARGLDVKDIKCVVNYDFPTSLEDYVHRIGRTGRAGARGTAFTFFTHSNAKFARDLIKI 390 (448)
Q Consensus 313 ~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~ 390 (448)
.+++.|++|+.+|||||+++++|+|+|++++||++++|.++.+|+||+||+||.|+.|.+++++.+.+...++.+.+.
T Consensus 332 ~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~ 409 (579)
T 3sqw_A 332 SLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDA 409 (579)
T ss_dssp HHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHH
T ss_pred HHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999887777666543
No 12
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=1.5e-53 Score=429.10 Aligned_cols=357 Identities=31% Similarity=0.496 Sum_probs=294.3
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHhHHHHhh--cCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHH
Q 013176 34 FPDYCLEVIAKLGFVEPTPIQAQGWPMAL--KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRE 111 (448)
Q Consensus 34 l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~--~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~ 111 (448)
+++.+.+.+..+||..|+|+|.++++.++ .++++++++|||+|||++|++|++..+...... ...++++||++||++
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~-~~~~~~~lil~Ptr~ 157 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD-SQYMVKAVIVAPTRD 157 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS-STTSCCEEEECSSHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhcccc-ccCCeeEEEEcCcHH
Confidence 99999999999999999999999999999 668999999999999999999999998765321 123568999999999
Q ss_pred HHHHHHHHHHHhhcC----CCceEEEEEcCCCchHhHHHH-hcCCcEEEEccHHHHHHHHcc-ccCCCCccEEEEecccc
Q 013176 112 LAVQIQEEALKFGSR----AGIRSTCIYGGAPKGPQIRDL-RRGVEIVIATPGRLIDMLEAQ-HTNLRRVTYLVLDEADR 185 (448)
Q Consensus 112 L~~q~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~T~~~l~~~~~~~-~~~~~~~~~iIvDE~h~ 185 (448)
|+.|+.+.++++... ....+..++++.........+ ...++|+|+||++|.+++.+. ...+..+++||+||||+
T Consensus 158 La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~ 237 (563)
T 3i5x_A 158 LALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADR 237 (563)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHH
T ss_pred HHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHH
Confidence 999999999987432 246678888888776666665 447899999999999888764 33577899999999999
Q ss_pred cccCCCHHHHHHHHHHcC-------CCcceEEEeccCchHHHHHHHHHcCCCeEEEeCCccccc---ccCcceEEEEecc
Q 013176 186 MLDMGFEPQIRKIVTQIR-------PDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKA---NQSINQVVEVVTE 255 (448)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~-------~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 255 (448)
+++++|...+..+...++ +..|++++|||+++.+..++..++..+............ ...+.+.......
T Consensus 238 l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (563)
T 3i5x_A 238 LLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEK 317 (563)
T ss_dssp HTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESS
T ss_pred HhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECch
Confidence 999999998888876653 367899999999998888888888887766654332221 2223333333322
Q ss_pred -hhHH----HHHHHHHHhhhcCCcEEEEecchhHHHHHHHHHHhC---CCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEE
Q 013176 256 -AEKY----NRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMD---GWPALSIHGDKNQSERDWVLAEFRSGRSPIMT 327 (448)
Q Consensus 256 -~~~~----~~l~~~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv 327 (448)
..+. ..+...+.....+.++||||+++..++.+++.|++. ++.+..+|++++..+|..+++.|++|+.+|||
T Consensus 318 ~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLv 397 (563)
T 3i5x_A 318 FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILV 397 (563)
T ss_dssp TTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEE
T ss_pred hHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEE
Confidence 2222 223333333345779999999999999999999886 88999999999999999999999999999999
Q ss_pred EeccccCCCCCCCccEEEEcCCCCChhhhhhcccccCCCCCCceEEEEecCCChHHHHHHHHHH
Q 013176 328 ATDVAARGLDVKDIKCVVNYDFPTSLEDYVHRIGRTGRAGARGTAFTFFTHSNAKFARDLIKIL 391 (448)
Q Consensus 328 ~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~ 391 (448)
||+++++|+|+|++++||++++|.++.+|+||+||+||.|+.|.+++++.+.+...++.+.+..
T Consensus 398 aT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~ 461 (563)
T 3i5x_A 398 CTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAK 461 (563)
T ss_dssp ECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHH
T ss_pred EcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999998888777776553
No 13
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=3.6e-52 Score=392.47 Aligned_cols=334 Identities=32% Similarity=0.547 Sum_probs=283.5
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHH
Q 013176 34 FPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELA 113 (448)
Q Consensus 34 l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~ 113 (448)
+++.+.++++.+||..|+|+|+++++.+.+++++++.+|||+|||++|+++++.. +.+++|++|+++|+
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~-----------~~~~liv~P~~~L~ 69 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL-----------GMKSLVVTPTRELT 69 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH-----------TCCEEEECSSHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh-----------cCCEEEEeCCHHHH
Confidence 5789999999999999999999999999999999999999999999999988874 55699999999999
Q ss_pred HHHHHHHHHhhcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCCCHH
Q 013176 114 VQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEP 193 (448)
Q Consensus 114 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~ 193 (448)
.|+.+.++++....+.++..++++.........+. .++|+|+||++|.+.+......+.++++||+||+|++.++++..
T Consensus 70 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~ 148 (337)
T 2z0m_A 70 RQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVR-NADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFID 148 (337)
T ss_dssp HHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHT-TCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHH
T ss_pred HHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcC-CCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHH
Confidence 99999999998888889999998887766555544 48999999999999888777778889999999999999999999
Q ss_pred HHHHHHHHcCCCcceEEEeccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceEEEEecchhHHHHHHHHHHhhhcCC
Q 013176 194 QIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKEVMDGS 273 (448)
Q Consensus 194 ~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 273 (448)
.+..++...+...+++++|||+++........++.++..+.... ........+....... ......+.. ..++
T Consensus 149 ~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~ 221 (337)
T 2z0m_A 149 DIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEACI----GLANVEHKFVHVKDDW--RSKVQALRE-NKDK 221 (337)
T ss_dssp HHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECSG----GGGGEEEEEEECSSSS--HHHHHHHHT-CCCS
T ss_pred HHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeeccc----ccCCceEEEEEeChHH--HHHHHHHHh-CCCC
Confidence 99999998888889999999999998888888887776653321 1112222222222221 222333433 3567
Q ss_pred cEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCCCccEEEEcCCCCCh
Q 013176 274 RILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVKDIKCVVNYDFPTSL 353 (448)
Q Consensus 274 k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~Vi~~~~p~s~ 353 (448)
++||||+++++++.+++.|+ .+..+|++++..+|.++++.|++|+.+|||||+++++|+|+|++++||++++|+++
T Consensus 222 ~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~ 297 (337)
T 2z0m_A 222 GVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDL 297 (337)
T ss_dssp SEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSH
T ss_pred cEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCH
Confidence 89999999999999998886 57899999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcccccCCCCCCceEEEEecCCChHHHHHHHHHH
Q 013176 354 EDYVHRIGRTGRAGARGTAFTFFTHSNAKFARDLIKIL 391 (448)
Q Consensus 354 ~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~ 391 (448)
.+|+||+||++|.|+.|.+++++. .+....+.+.+.+
T Consensus 298 ~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~ 334 (337)
T 2z0m_A 298 RTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVS 334 (337)
T ss_dssp HHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC---
T ss_pred HHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHh
Confidence 999999999999999999999999 7877777776654
No 14
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=2.9e-54 Score=425.52 Aligned_cols=373 Identities=27% Similarity=0.452 Sum_probs=179.8
Q ss_pred CCeEEecCCCCCc---ccccccCCCCHHHHHHHHHCCCCCCcHHHHhHHHHhhcC--CcEEEEcCCCChHHHHHHHHHHH
Q 013176 13 REITVEGHDVPRP---IRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKG--RDLIGIAETGSGKTLSYLLPAFV 87 (448)
Q Consensus 13 ~~~~~~~~~~~~p---~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~~~--~~~lv~~~tGsGKT~~~~l~~l~ 87 (448)
..+.+.+.+.+.| ..+|+++++++.+.+.++.+||..|+|+|.++++.++.+ +++++.+|||||||++|+++++.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~ 154 (479)
T 3fmp_B 75 NQVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLS 154 (479)
T ss_dssp SCEEEECSSTTSCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHT
T ss_pred ccceecCCCCCCCccCcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHH
Confidence 3455666666665 678999999999999999999999999999999999987 89999999999999999999998
Q ss_pred HhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCC-CceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHH
Q 013176 88 HVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRA-GIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLE 166 (448)
Q Consensus 88 ~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~ 166 (448)
.+.... .++++||++|+++|+.|+.+.++++.... ++.+....++...... ....++|+|+||++|.+++.
T Consensus 155 ~l~~~~-----~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~l~ 226 (479)
T 3fmp_B 155 QVEPAN-----KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCS 226 (479)
T ss_dssp TCCTTS-----CSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHT
T ss_pred HHhhcC-----CCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchHHHHHHH
Confidence 875532 25589999999999999999999987653 4666666665543222 13357899999999999886
Q ss_pred c-cccCCCCccEEEEeccccccc-CCCHHHHHHHHHHcCCCcceEEEeccCchHHHHHHHHHcCCCeEEEeCCccccccc
Q 013176 167 A-QHTNLRRVTYLVLDEADRMLD-MGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQ 244 (448)
Q Consensus 167 ~-~~~~~~~~~~iIvDE~h~~~~-~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (448)
+ ....+.++++||+||+|++.+ .++...+..+...+++..+++++|||++.....+...++.++..+...........
T Consensus 227 ~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 306 (479)
T 3fmp_B 227 KLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDT 306 (479)
T ss_dssp TSCCCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC--------
T ss_pred hcCCcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCC
Confidence 5 345678899999999999987 56777888888888889999999999999999999999888877766554433322
Q ss_pred CcceEEEEecchhHHHHHHHHHHhhhcCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCC
Q 013176 245 SINQVVEVVTEAEKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSP 324 (448)
Q Consensus 245 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 324 (448)
....+........+...+..++... ...++||||+++..++.+++.|.+.++.+..+||+++..+|..+++.|++|+.+
T Consensus 307 ~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~ 385 (479)
T 3fmp_B 307 IKQYYVLCSSRDEKFQALCNLYGAI-TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEK 385 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceEEEEEeCCHHHHHHHHHHHHhhc-cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCc
Confidence 2222222223345556666655543 356899999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccccCCCCCCCccEEEEcCCCC------ChhhhhhcccccCCCCCCceEEEEecCCC-hHHHHHHHHHHHHh
Q 013176 325 IMTATDVAARGLDVKDIKCVVNYDFPT------SLEDYVHRIGRTGRAGARGTAFTFFTHSN-AKFARDLIKILQEA 394 (448)
Q Consensus 325 vLv~T~~~~~Gidi~~~~~Vi~~~~p~------s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~-~~~~~~l~~~~~~~ 394 (448)
|||||+++++|+|+|++++||++|+|. +..+|+||+||+||.|+.|.+++++++.+ ...++.+.+.+...
T Consensus 386 iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~ 462 (479)
T 3fmp_B 386 VLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKK 462 (479)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred EEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhCCC
Confidence 999999999999999999999999994 66899999999999999999999998665 55666666655444
No 15
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=2.3e-52 Score=416.65 Aligned_cols=348 Identities=19% Similarity=0.304 Sum_probs=279.2
Q ss_pred CCCcccccc--cCCCCHHHHHHHHH-CCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCC
Q 013176 22 VPRPIRIFQ--EANFPDYCLEVIAK-LGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQG 98 (448)
Q Consensus 22 ~~~p~~~~~--~~~l~~~l~~~~~~-~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~ 98 (448)
.+.....|+ ++++++.+.+.++. +||..|+|+|.++++.++.++++++.+|||+|||++|++|++..
T Consensus 14 ~~~~~~~w~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~---------- 83 (591)
T 2v1x_A 14 YDSSPAAWNKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS---------- 83 (591)
T ss_dssp --CCGGGGCCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS----------
T ss_pred CCcchhccccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc----------
Confidence 344445555 47888999999998 79999999999999999999999999999999999999999863
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHH---HH---hcCCcEEEEccHHHH------HHHH
Q 013176 99 EGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIR---DL---RRGVEIVIATPGRLI------DMLE 166 (448)
Q Consensus 99 ~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~iiv~T~~~l~------~~~~ 166 (448)
..++||++|+++|+.|+.+.+.++ ++.+..+.++....+... .+ ...++|+|+||++|. +.+.
T Consensus 84 -~g~~lVisP~~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~ 158 (591)
T 2v1x_A 84 -DGFTLVICPLISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLE 158 (591)
T ss_dssp -SSEEEEECSCHHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHH
T ss_pred -CCcEEEEeCHHHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHH
Confidence 457999999999999999999986 677888888776544322 22 356899999999874 2222
Q ss_pred ccccCCCCccEEEEecccccccCC--CHHHHHH--HHHHcCCCcceEEEeccCchHHHHHHHHHcCCCeEEEeCCccccc
Q 013176 167 AQHTNLRRVTYLVLDEADRMLDMG--FEPQIRK--IVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKA 242 (448)
Q Consensus 167 ~~~~~~~~~~~iIvDE~h~~~~~~--~~~~~~~--~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (448)
....+.++++|||||||++++++ |...+.. .+....+..+++++|||+++.+...+...+..+..........
T Consensus 159 -~~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~~-- 235 (591)
T 2v1x_A 159 -KAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASFN-- 235 (591)
T ss_dssp -HHHHTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCCC--
T ss_pred -hhhhccCCcEEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCCC--
Confidence 23346789999999999999987 6665544 3333446789999999999988887777776654443332221
Q ss_pred ccCcceEEEEec--chhHHHHHHHHHHhhhcCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhc
Q 013176 243 NQSINQVVEVVT--EAEKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRS 320 (448)
Q Consensus 243 ~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 320 (448)
...+...+.... ...+...+.+++.....+.++||||++++.++.+++.|++.++.+..+|++|+.++|..+++.|++
T Consensus 236 r~nl~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~ 315 (591)
T 2v1x_A 236 RPNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSA 315 (591)
T ss_dssp CTTEEEEEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT
T ss_pred CcccEEEEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHc
Confidence 122222222221 234556667777655567899999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEeccccCCCCCCCccEEEEcCCCCChhhhhhcccccCCCCCCceEEEEecCCChHHHHHH
Q 013176 321 GRSPIMTATDVAARGLDVKDIKCVVNYDFPTSLEDYVHRIGRTGRAGARGTAFTFFTHSNAKFARDL 387 (448)
Q Consensus 321 g~~~vLv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l 387 (448)
|+.+|||||+++++|||+|++++||++++|.|++.|+|++||+||.|+++.|++++.+.+....+.+
T Consensus 316 g~~~VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~ 382 (591)
T 2v1x_A 316 NEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSM 382 (591)
T ss_dssp TSSSEEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHH
T ss_pred CCCeEEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999987766555443
No 16
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=4.9e-51 Score=403.35 Aligned_cols=342 Identities=20% Similarity=0.354 Sum_probs=276.5
Q ss_pred ccccccCCCCHHHHHHHHH-CCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEE
Q 013176 26 IRIFQEANFPDYCLEVIAK-LGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVL 104 (448)
Q Consensus 26 ~~~~~~~~l~~~l~~~~~~-~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vl 104 (448)
+.+|+++++++.+.+.++. +||..|+|+|.++++.+++++++++.+|||+|||++|++|++.. ...++
T Consensus 1 ~~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~-----------~g~~l 69 (523)
T 1oyw_A 1 MAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL-----------NGLTV 69 (523)
T ss_dssp CCCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS-----------SSEEE
T ss_pred CCChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh-----------CCCEE
Confidence 3579999999999999998 89999999999999999999999999999999999999999854 45699
Q ss_pred EEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhH---HHH-hcCCcEEEEccHHHHHHHHccccCCCCccEEEE
Q 013176 105 VLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQI---RDL-RRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVL 180 (448)
Q Consensus 105 il~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIv 180 (448)
|++|+++|+.|+.+.++.+ ++.+..+.++....+.. ..+ ...++|+|+||++|............++++|||
T Consensus 70 vi~P~~aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vVi 145 (523)
T 1oyw_A 70 VVSPLISLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAV 145 (523)
T ss_dssp EECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEE
T ss_pred EECChHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEE
Confidence 9999999999999999885 66777777776554332 222 346899999999995332222334467899999
Q ss_pred ecccccccCC--CHHHHHHH---HHHcCCCcceEEEeccCchHHHHHHHHHcC-CCeEEEeCCcccccccCcceEEEEec
Q 013176 181 DEADRMLDMG--FEPQIRKI---VTQIRPDRQTLYWSATWPREVETLARQFLR-NPYKVIIGSLELKANQSINQVVEVVT 254 (448)
Q Consensus 181 DE~h~~~~~~--~~~~~~~~---~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (448)
||||++.+++ |...+..+ ...+ +..+++++|||+++.....+...+. ........... ... ..+....
T Consensus 146 DEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~---r~~--l~~~v~~ 219 (523)
T 1oyw_A 146 DEAHCISQWGHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFD---RPN--IRYMLME 219 (523)
T ss_dssp SSGGGGCTTSSCCCHHHHGGGGHHHHC-TTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECCCC---CTT--EEEEEEE
T ss_pred eCccccCcCCCccHHHHHHHHHHHHhC-CCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCCCC---CCc--eEEEEEe
Confidence 9999999887 66555543 3333 5688999999999877655444443 22222222211 112 2233334
Q ss_pred chhHHHHHHHHHHhhhcCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccC
Q 013176 255 EAEKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAAR 334 (448)
Q Consensus 255 ~~~~~~~l~~~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~ 334 (448)
...+...+.+++... .++++||||++++.++.+++.|++.++.+..+|++++.++|..+++.|++|+.+|||||+++++
T Consensus 220 ~~~~~~~l~~~l~~~-~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~ 298 (523)
T 1oyw_A 220 KFKPLDQLMRYVQEQ-RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGM 298 (523)
T ss_dssp CSSHHHHHHHHHHHT-TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCT
T ss_pred CCCHHHHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhC
Confidence 456677788877764 5678999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccEEEEcCCCCChhhhhhcccccCCCCCCceEEEEecCCChHHHHHHHH
Q 013176 335 GLDVKDIKCVVNYDFPTSLEDYVHRIGRTGRAGARGTAFTFFTHSNAKFARDLIK 389 (448)
Q Consensus 335 Gidi~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~ 389 (448)
|+|+|++++||++++|.|+.+|+|++||+||.|.++.+++++++.+....+.+++
T Consensus 299 GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~~ 353 (523)
T 1oyw_A 299 GINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLE 353 (523)
T ss_dssp TTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHH
T ss_pred CCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999998877665555443
No 17
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.9e-53 Score=416.40 Aligned_cols=383 Identities=26% Similarity=0.441 Sum_probs=256.2
Q ss_pred HHHHHHhcCCeE-EecCCCCCcccccccCCCCHHHHHHHHHCCCCCCcHHHHhHHHHhhcC--CcEEEEcCCCChHHHHH
Q 013176 5 EVKMYRARREIT-VEGHDVPRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKG--RDLIGIAETGSGKTLSY 81 (448)
Q Consensus 5 ~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~~~--~~~lv~~~tGsGKT~~~ 81 (448)
+.+.|.+..+.. +...+.|.++..+...++++.+.+.+...||..|+++|.++++.++++ +++++.+|||+|||++|
T Consensus 96 ~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~ 175 (508)
T 3fho_A 96 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAF 175 (508)
T ss_dssp -------------------------------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHH
Confidence 344444444433 344555666777888899999999999999999999999999999998 89999999999999999
Q ss_pred HHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHH
Q 013176 82 LLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRL 161 (448)
Q Consensus 82 ~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l 161 (448)
+++++..+.... .+++++|++|+++|+.|+.+.++++....++.+....++.... .....++|+|+||++|
T Consensus 176 ~~~il~~l~~~~-----~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Ivv~T~~~l 246 (508)
T 3fho_A 176 ALTMLSRVDASV-----PKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPK----GAKIDAQIVIGTPGTV 246 (508)
T ss_dssp HHHHHHHSCTTC-----CSCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC--------------CCCCSEEEECHHHH
T ss_pred HHHHHHHHHhCC-----CCceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCcccc----cccCCCCEEEECHHHH
Confidence 999998876532 2568999999999999999999999876666665555443221 2233689999999999
Q ss_pred HHHHHccccCCCCccEEEEeccccccc-CCCHHHHHHHHHHcCCCcceEEEeccCchHHHHHHHHHcCCCeEEEeCCccc
Q 013176 162 IDMLEAQHTNLRRVTYLVLDEADRMLD-MGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLEL 240 (448)
Q Consensus 162 ~~~~~~~~~~~~~~~~iIvDE~h~~~~-~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (448)
.+.+......+.++++||+||||++.+ .++...+..+...+++..+++++|||+++....+...+..++..+.......
T Consensus 247 ~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~ 326 (508)
T 3fho_A 247 MDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEEL 326 (508)
T ss_dssp HHHHHTTCSCCTTCCEEEECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC-
T ss_pred HHHHHcCCccccCCCEEEEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccC
Confidence 999888777888999999999999887 5688889999999988999999999999989999998888887765554443
Q ss_pred ccccCcceEEEEecchhHHHHHHHHHHhhhcCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhc
Q 013176 241 KANQSINQVVEVVTEAEKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRS 320 (448)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 320 (448)
.................+...+..++... .++++||||+++++++.+++.|.+.+..+..+|++++..+|..+++.|++
T Consensus 327 ~~~~~~~~~~~~~~~~~k~~~l~~ll~~~-~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~ 405 (508)
T 3fho_A 327 SVEGIKQLYMDCQSEEHKYNVLVELYGLL-TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRV 405 (508)
T ss_dssp ---CCCCEEEEC--CHHHHHHHHHHHC----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHS
T ss_pred CcccceEEEEECCchHHHHHHHHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHC
Confidence 33332333333334555666666666543 46789999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEeccccCCCCCCCccEEEEcCCC------CChhhhhhcccccCCCCCCceEEEEecC-CChHHHHHHHHHHHH
Q 013176 321 GRSPIMTATDVAARGLDVKDIKCVVNYDFP------TSLEDYVHRIGRTGRAGARGTAFTFFTH-SNAKFARDLIKILQE 393 (448)
Q Consensus 321 g~~~vLv~T~~~~~Gidi~~~~~Vi~~~~p------~s~~~~~Q~~GR~~R~g~~g~~~~~~~~-~~~~~~~~l~~~~~~ 393 (448)
|+.+|||||+++++|+|+|++++||++++| .++.+|+||+||+||.|+.|.+++++.+ .+....+.+.+.+..
T Consensus 406 g~~~VLVaT~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~ 485 (508)
T 3fho_A 406 GTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQR 485 (508)
T ss_dssp SSCCCCEECC-----CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCC
T ss_pred CCCeEEEeCChhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCC
Confidence 999999999999999999999999999999 7899999999999999999999999874 455666666666544
Q ss_pred hCCC
Q 013176 394 AGQI 397 (448)
Q Consensus 394 ~~~~ 397 (448)
....
T Consensus 486 ~i~~ 489 (508)
T 3fho_A 486 PITR 489 (508)
T ss_dssp CCC-
T ss_pred Cccc
Confidence 4333
No 18
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=2.6e-48 Score=376.18 Aligned_cols=326 Identities=22% Similarity=0.307 Sum_probs=258.6
Q ss_pred HHHHHHHH-CCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHH
Q 013176 37 YCLEVIAK-LGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQ 115 (448)
Q Consensus 37 ~l~~~~~~-~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q 115 (448)
.+.+.++. +|| .|+|+|.++++.+++++++++.+|||+|||++|+++++..+.. +++++|++||++|+.|
T Consensus 9 ~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~~--------~~~~lil~Pt~~L~~q 79 (414)
T 3oiy_A 9 DFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARK--------GKKSALVFPTVTLVKQ 79 (414)
T ss_dssp HHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHTT--------TCCEEEEESSHHHHHH
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhcC--------CCEEEEEECCHHHHHH
Confidence 44555654 678 8999999999999999999999999999999999888876532 6789999999999999
Q ss_pred HHHHHHHhhcCCCceEEEEEcCCCc---hHhHHHHhcC-CcEEEEccHHHHHHHHccccCCCCccEEEEeccccccc---
Q 013176 116 IQEEALKFGSRAGIRSTCIYGGAPK---GPQIRDLRRG-VEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLD--- 188 (448)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~--- 188 (448)
+.+.+++++. .++++..++|+.+. ......+..+ ++|+|+||++|.+.+.. ..+.++++||+||||++.+
T Consensus 80 ~~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~~~~~ 156 (414)
T 3oiy_A 80 TLERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASR 156 (414)
T ss_dssp HHHHHHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHHHCHH
T ss_pred HHHHHHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhhhccc
Confidence 9999999987 78899999999877 4455556555 99999999999877764 5567899999999997654
Q ss_pred --------CCCHHH-HHHHHHHcC-----------CCcceEEEecc-CchHHH-HHHHHHcCCCeEEEeCCcccccccCc
Q 013176 189 --------MGFEPQ-IRKIVTQIR-----------PDRQTLYWSAT-WPREVE-TLARQFLRNPYKVIIGSLELKANQSI 246 (448)
Q Consensus 189 --------~~~~~~-~~~~~~~~~-----------~~~~~v~~SAT-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (448)
.+|... +..++..++ +..+++++||| .+..+. .+...+..-. ... .......+
T Consensus 157 ~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~i 231 (414)
T 3oiy_A 157 NIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFT----VGR-LVSVARNI 231 (414)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHSCC----SSC-CCCCCCSE
T ss_pred hhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhccC----cCc-cccccccc
Confidence 556666 777777765 78899999999 454333 2233332211 011 11112223
Q ss_pred ceEEEEecchhHHHHHHHHHHhhhcCCcEEEEecchhHHHHHHHHHHhCCCCeE-EEcCCCCHHHHHHHHHHHhcCCCCE
Q 013176 247 NQVVEVVTEAEKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPAL-SIHGDKNQSERDWVLAEFRSGRSPI 325 (448)
Q Consensus 247 ~~~~~~~~~~~~~~~l~~~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~~~r~~~~~~f~~g~~~v 325 (448)
.+.+. ..++...+.++++. .+.++||||+++..++.+++.|++.++.+. .+|+. +|. ++.|++|+.+|
T Consensus 232 ~~~~~---~~~~~~~l~~~l~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~v 300 (414)
T 3oiy_A 232 THVRI---SSRSKEKLVELLEI--FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINI 300 (414)
T ss_dssp EEEEE---SSCCHHHHHHHHHH--HCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSE
T ss_pred hheee---ccCHHHHHHHHHHH--cCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeE
Confidence 33332 22456667777776 457899999999999999999999999998 88884 344 99999999999
Q ss_pred EEE----eccccCCCCCCC-ccEEEEcCCC--CChhhhhhcccccCCCC----CCceEEEEecCCChHHHHHHHHHHH
Q 013176 326 MTA----TDVAARGLDVKD-IKCVVNYDFP--TSLEDYVHRIGRTGRAG----ARGTAFTFFTHSNAKFARDLIKILQ 392 (448)
Q Consensus 326 Lv~----T~~~~~Gidi~~-~~~Vi~~~~p--~s~~~~~Q~~GR~~R~g----~~g~~~~~~~~~~~~~~~~l~~~~~ 392 (448)
||| |+++++|+|+|+ +++||++++| .++.+|+||+||+||.| ..|.+++++ .+....+.+.+.+.
T Consensus 301 Lvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 301 LIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLL 376 (414)
T ss_dssp EEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHHH
T ss_pred EEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHhc
Confidence 999 999999999999 9999999999 99999999999999987 478888888 66777777777766
No 19
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=9.4e-46 Score=381.58 Aligned_cols=339 Identities=19% Similarity=0.250 Sum_probs=262.0
Q ss_pred CcccccccCCCCHHHHHHHHHCCCCCCcHHHHhHHHH-hhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCce
Q 013176 24 RPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPM-ALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPI 102 (448)
Q Consensus 24 ~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~i~~-~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~ 102 (448)
.+..+|+++++++.+.+.++.+||..|+|+|.++++. +.+++++++++|||||||+++.++++..+... +.+
T Consensus 5 ~~~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-------~~~ 77 (715)
T 2va8_A 5 LEWMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN-------GGK 77 (715)
T ss_dssp -CCCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS-------CSE
T ss_pred cccCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC-------CCe
Confidence 3446799999999999999999999999999999999 77889999999999999999999999887642 568
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEec
Q 013176 103 VLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDE 182 (448)
Q Consensus 103 vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE 182 (448)
++|++|+++|+.|+.+.++.+. ..++++..++|+...... ....++|+|+||++|...+.+....+.++++||+||
T Consensus 78 il~i~P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE 153 (715)
T 2va8_A 78 AIYVTPLRALTNEKYLTFKDWE-LIGFKVAMTSGDYDTDDA---WLKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDE 153 (715)
T ss_dssp EEEECSCHHHHHHHHHHHGGGG-GGTCCEEECCSCSSSCCG---GGGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECS
T ss_pred EEEEeCcHHHHHHHHHHHHHhh-cCCCEEEEEeCCCCCchh---hcCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEec
Confidence 9999999999999999996554 347888888887655443 123689999999999998887666688999999999
Q ss_pred ccccccCCCHHHHHHHHHHcCCCcceEEEeccCchHHHHHHHHHcCCCeEEEeCCcccccc--------cCcceEEEEec
Q 013176 183 ADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKAN--------QSINQVVEVVT 254 (448)
Q Consensus 183 ~h~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~ 254 (448)
+|.+.+..+...+..++..++ +.++++||||+++ ...+...+ ..+. +.......... ...........
T Consensus 154 ~H~l~~~~~~~~l~~i~~~~~-~~~ii~lSATl~n-~~~~~~~l-~~~~-~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~ 229 (715)
T 2va8_A 154 LHYLNDPERGPVVESVTIRAK-RRNLLALSATISN-YKQIAKWL-GAEP-VATNWRPVPLIEGVIYPERKKKEYNVIFKD 229 (715)
T ss_dssp GGGGGCTTTHHHHHHHHHHHH-TSEEEEEESCCTT-HHHHHHHH-TCEE-EECCCCSSCEEEEEEEECSSTTEEEEEETT
T ss_pred hhhcCCcccchHHHHHHHhcc-cCcEEEEcCCCCC-HHHHHHHh-CCCc-cCCCCCCCCceEEEEecCCcccceeeecCc
Confidence 999988778888888877775 7899999999975 34444433 3211 11000000000 00000011110
Q ss_pred --------chhHHHHHHHHHHhhhcCCcEEEEecchhHHHHHHHHHHhCC------------------------------
Q 013176 255 --------EAEKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDG------------------------------ 296 (448)
Q Consensus 255 --------~~~~~~~l~~~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~~------------------------------ 296 (448)
.......+.+.+ ..++++||||++++.++.+++.|.+..
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~---~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 306 (715)
T 2va8_A 230 NTTKKVHGDDAIIAYTLDSL---SKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKEL 306 (715)
T ss_dssp SCEEEEESSSHHHHHHHHHH---TTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHH
T ss_pred chhhhcccchHHHHHHHHHH---hcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHH
Confidence 122333333333 356899999999999999999997642
Q ss_pred ------CCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCCCccEEEE----cC-------CCCChhhhhhc
Q 013176 297 ------WPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVKDIKCVVN----YD-------FPTSLEDYVHR 359 (448)
Q Consensus 297 ------~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~Vi~----~~-------~p~s~~~~~Q~ 359 (448)
..+..+|++++.++|..+++.|++|..+|||||+++++|+|+|++++||+ || .|.|..+|.||
T Consensus 307 l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr 386 (715)
T 2va8_A 307 LKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQM 386 (715)
T ss_dssp HHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHH
T ss_pred HHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHH
Confidence 24889999999999999999999999999999999999999999999998 88 78899999999
Q ss_pred ccccCCCCC--CceEEEEecCCC
Q 013176 360 IGRTGRAGA--RGTAFTFFTHSN 380 (448)
Q Consensus 360 ~GR~~R~g~--~g~~~~~~~~~~ 380 (448)
+||+||.|. .|.|++++.+.+
T Consensus 387 ~GRaGR~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 387 SGRAGRPGFDQIGESIVVVRDKE 409 (715)
T ss_dssp HTTBCCTTTCSCEEEEEECSCGG
T ss_pred hhhcCCCCCCCCceEEEEeCCch
Confidence 999999874 688998887665
No 20
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=2.4e-46 Score=385.72 Aligned_cols=332 Identities=20% Similarity=0.235 Sum_probs=265.8
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHhHHHH-hhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEE
Q 013176 28 IFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPM-ALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVL 106 (448)
Q Consensus 28 ~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~i~~-~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil 106 (448)
+|+++++++.+.+.++.+||..|+|+|.++++. +..++++++++|||||||+++.++++..+... +.+++|+
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-------~~~~l~i 74 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ-------GGKAVYI 74 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH-------CSEEEEE
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC-------CCEEEEE
Confidence 689999999999999999999999999999998 88899999999999999999999999887642 5689999
Q ss_pred cCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEeccccc
Q 013176 107 APTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRM 186 (448)
Q Consensus 107 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~ 186 (448)
+|+++|+.|+.+.++++.. .++++..++|+...... ....++|+|+||+++...+.+....+.++++||+||+|.+
T Consensus 75 ~P~raLa~q~~~~~~~l~~-~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l 150 (720)
T 2zj8_A 75 VPLKALAEEKFQEFQDWEK-IGLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLI 150 (720)
T ss_dssp CSSGGGHHHHHHHTGGGGG-GTCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGG
T ss_pred cCcHHHHHHHHHHHHHHHh-cCCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCccc
Confidence 9999999999999976544 47889999987655432 2346899999999999888776666888999999999999
Q ss_pred ccCCCHHHHHHHHHHcCCCcceEEEeccCchHHHHHHHHHcCCCeEEEeCCcccccccCcce------EEEEec-----c
Q 013176 187 LDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQ------VVEVVT-----E 255 (448)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~-----~ 255 (448)
.++.+...+..++..+....+++++|||+++ ...+.. ++..+. ..... .+..+.. ...... .
T Consensus 151 ~~~~r~~~~~~ll~~l~~~~~ii~lSATl~n-~~~~~~-~l~~~~--~~~~~---rp~~l~~~~~~~~~~~~~~~~~~~~ 223 (720)
T 2zj8_A 151 GSRDRGATLEVILAHMLGKAQIIGLSATIGN-PEELAE-WLNAEL--IVSDW---RPVKLRRGVFYQGFVTWEDGSIDRF 223 (720)
T ss_dssp GCTTTHHHHHHHHHHHBTTBEEEEEECCCSC-HHHHHH-HTTEEE--EECCC---CSSEEEEEEEETTEEEETTSCEEEC
T ss_pred CCCcccHHHHHHHHHhhcCCeEEEEcCCcCC-HHHHHH-HhCCcc--cCCCC---CCCcceEEEEeCCeeeccccchhhh
Confidence 9888888999988888778999999999975 334444 333211 11000 0000010 011111 1
Q ss_pred hhHHHHHHHHHHhhhcCCcEEEEecchhHHHHHHHHHHhC---------------------------------CCCeEEE
Q 013176 256 AEKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMD---------------------------------GWPALSI 302 (448)
Q Consensus 256 ~~~~~~l~~~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~---------------------------------~~~~~~~ 302 (448)
......+.+.+ ..++++||||++++.++.++..|.+. ...+..+
T Consensus 224 ~~~~~~~~~~~---~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~ 300 (720)
T 2zj8_A 224 SSWEELVYDAI---RKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFH 300 (720)
T ss_dssp SSTTHHHHHHH---HTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEE
T ss_pred hHHHHHHHHHH---hCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeee
Confidence 22333333333 35689999999999999999998753 1248899
Q ss_pred cCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCCCccEEEE----cC----CCCChhhhhhcccccCCCCC--CceE
Q 013176 303 HGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVKDIKCVVN----YD----FPTSLEDYVHRIGRTGRAGA--RGTA 372 (448)
Q Consensus 303 ~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~Vi~----~~----~p~s~~~~~Q~~GR~~R~g~--~g~~ 372 (448)
|++++.++|..+++.|++|..+|||||+++++|+|+|++++||+ || .|.+..+|.||+||+||.|. .|.|
T Consensus 301 h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~ 380 (720)
T 2zj8_A 301 HAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEG 380 (720)
T ss_dssp CTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEE
T ss_pred cCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceE
Confidence 99999999999999999999999999999999999999999998 66 58899999999999999884 6888
Q ss_pred EEEecCCC
Q 013176 373 FTFFTHSN 380 (448)
Q Consensus 373 ~~~~~~~~ 380 (448)
++++.+.+
T Consensus 381 ~~l~~~~~ 388 (720)
T 2zj8_A 381 IIVSTSDD 388 (720)
T ss_dssp EEECSSSC
T ss_pred EEEecCcc
Confidence 98888776
No 21
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=2.1e-46 Score=386.53 Aligned_cols=340 Identities=21% Similarity=0.270 Sum_probs=224.5
Q ss_pred HHHHHHCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHH
Q 013176 39 LEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQE 118 (448)
Q Consensus 39 ~~~~~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~ 118 (448)
.+.+..+||..|+++|.++++.++.++++++++|||+|||++|+++++..+..... ..+.++||++||++|+.|+.+
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~---~~~~~~lvl~Pt~~L~~Q~~~ 79 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQ---GQKGKVVFFANQIPVYEQNKS 79 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCT---TCCCCEEEECSSHHHHHHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCcc---CCCCeEEEEECCHHHHHHHHH
Confidence 34566789999999999999999999999999999999999999999988765421 123689999999999999999
Q ss_pred HHHHhhcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHcccc-CCCCccEEEEecccccccCC-CHHHHH
Q 013176 119 EALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHT-NLRRVTYLVLDEADRMLDMG-FEPQIR 196 (448)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~-~~~~~~~iIvDE~h~~~~~~-~~~~~~ 196 (448)
.++++....++++..++|+.........+...++|+|+||+.|.+.+..... .+.++++|||||||++.+.. +...+.
T Consensus 80 ~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~ 159 (696)
T 2ykg_A 80 VFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMF 159 (696)
T ss_dssp HHHHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHH
T ss_pred HHHHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHH
Confidence 9999987778999999998877666666667899999999999999887766 68889999999999988654 222222
Q ss_pred HHHHH-----cCCCcceEEEeccCc-------hH-HHHHHHH---------------------HcCCCeEEEeCCccccc
Q 013176 197 KIVTQ-----IRPDRQTLYWSATWP-------RE-VETLARQ---------------------FLRNPYKVIIGSLELKA 242 (448)
Q Consensus 197 ~~~~~-----~~~~~~~v~~SAT~~-------~~-~~~~~~~---------------------~~~~~~~~~~~~~~~~~ 242 (448)
.++.. ..+..++++||||+. .. ...+... +...|............
T Consensus 160 ~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~ 239 (696)
T 2ykg_A 160 NYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRIS 239 (696)
T ss_dssp HHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSC
T ss_pred HHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccC
Confidence 22222 136689999999986 11 1111111 11112111100000000
Q ss_pred ------------------------c-------------------------------------------------------
Q 013176 243 ------------------------N------------------------------------------------------- 243 (448)
Q Consensus 243 ------------------------~------------------------------------------------------- 243 (448)
.
T Consensus 240 ~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 319 (696)
T 2ykg_A 240 DKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKY 319 (696)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHH
Confidence 0
Q ss_pred -------------------------------cCcceEEE----------------EecchhHHHHHHHHHHhhh---cCC
Q 013176 244 -------------------------------QSINQVVE----------------VVTEAEKYNRLIKLLKEVM---DGS 273 (448)
Q Consensus 244 -------------------------------~~~~~~~~----------------~~~~~~~~~~l~~~l~~~~---~~~ 273 (448)
..+.+.+. ......+...+.+++.+.. .+.
T Consensus 320 ~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~ 399 (696)
T 2ykg_A 320 NDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPET 399 (696)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTC
T ss_pred hHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCC
Confidence 00000000 0013456667777777653 467
Q ss_pred cEEEEecchhHHHHHHHHHHhCC----CCeEEE--------cCCCCHHHHHHHHHHHhc-CCCCEEEEeccccCCCCCCC
Q 013176 274 RILIFTETKKGCDQVTRQLRMDG----WPALSI--------HGDKNQSERDWVLAEFRS-GRSPIMTATDVAARGLDVKD 340 (448)
Q Consensus 274 k~lVf~~~~~~~~~l~~~L~~~~----~~~~~~--------~~~~~~~~r~~~~~~f~~-g~~~vLv~T~~~~~Gidi~~ 340 (448)
++||||+++..++.+++.|++.+ +++..+ |++++.++|.++++.|++ |+.+|||||+++++|||+|+
T Consensus 400 ~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~ 479 (696)
T 2ykg_A 400 ITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQ 479 (696)
T ss_dssp CEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC---CC
T ss_pred cEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCcc
Confidence 89999999999999999999987 788888 559999999999999998 99999999999999999999
Q ss_pred ccEEEEcCCCCChhhhhhcccccCCCCCCceEEEEecCCChHH
Q 013176 341 IKCVVNYDFPTSLEDYVHRIGRTGRAGARGTAFTFFTHSNAKF 383 (448)
Q Consensus 341 ~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 383 (448)
+++||+||+|+++.+|+||+|| ||. +.|.+++++...+...
T Consensus 480 v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~ 520 (696)
T 2ykg_A 480 CNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIE 520 (696)
T ss_dssp CSEEEEESCC--CCCC-----------CCCEEEEEESCHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHH
Confidence 9999999999999999999999 998 7899998888766533
No 22
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=6e-46 Score=373.78 Aligned_cols=330 Identities=20% Similarity=0.246 Sum_probs=204.9
Q ss_pred CCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCC
Q 013176 48 VEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRA 127 (448)
Q Consensus 48 ~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~ 127 (448)
..|+|+|.++++.++.++++++.+|||+|||++|+++++..+..... ..++++||++|+++|+.|+.+.++++....
T Consensus 6 ~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~---~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 82 (556)
T 4a2p_A 6 KKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA---GRKAKVVFLATKVPVYEQQKNVFKHHFERQ 82 (556)
T ss_dssp --CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS---SCCCCEEEECSSHHHHHHHHHHHHHHHGGG
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcc---cCCCeEEEEeCCHHHHHHHHHHHHHHhccc
Confidence 38999999999999999999999999999999999999988876432 226679999999999999999999998877
Q ss_pred CceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHcccc-CCCCccEEEEecccccccCCCHHHH-HHHHHH-c--
Q 013176 128 GIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHT-NLRRVTYLVLDEADRMLDMGFEPQI-RKIVTQ-I-- 202 (448)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~-~~~~~~~iIvDE~h~~~~~~~~~~~-~~~~~~-~-- 202 (448)
++++..++|+.........+..+++|+|+||++|.+.+..... .+.++++||+||||++.+++....+ ..++.. +
T Consensus 83 ~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~ 162 (556)
T 4a2p_A 83 GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNS 162 (556)
T ss_dssp TCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHHHCC
T ss_pred CceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHhhhcc
Confidence 8999999999877777777777799999999999999988776 7889999999999999887633222 222221 1
Q ss_pred -CCCcceEEEeccCch-----------HHHHHHHHH------------------cCCCeEEEeCCccccccc--------
Q 013176 203 -RPDRQTLYWSATWPR-----------EVETLARQF------------------LRNPYKVIIGSLELKANQ-------- 244 (448)
Q Consensus 203 -~~~~~~v~~SAT~~~-----------~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~-------- 244 (448)
.+..+++++|||+.. .+..+...+ ...+..............
T Consensus 163 ~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (556)
T 4a2p_A 163 ASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNL 242 (556)
T ss_dssp ---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHHHHH
T ss_pred cCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHHHHHH
Confidence 356789999999843 111111111 111111111000000000
Q ss_pred ------C----c--ceEE--------------------------------------------------------------
Q 013176 245 ------S----I--NQVV-------------------------------------------------------------- 250 (448)
Q Consensus 245 ------~----~--~~~~-------------------------------------------------------------- 250 (448)
. . ....
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 322 (556)
T 4a2p_A 243 MSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDAR 322 (556)
T ss_dssp HHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 0 0 0000
Q ss_pred -------------------------------------------EEecchhHHHHHHHHHHhh---hcCCcEEEEecchhH
Q 013176 251 -------------------------------------------EVVTEAEKYNRLIKLLKEV---MDGSRILIFTETKKG 284 (448)
Q Consensus 251 -------------------------------------------~~~~~~~~~~~l~~~l~~~---~~~~k~lVf~~~~~~ 284 (448)
.......|...+.+++.+. ..+.++||||+++..
T Consensus 323 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~ 402 (556)
T 4a2p_A 323 IIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRAL 402 (556)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccHHH
Confidence 0000134556666666554 346799999999999
Q ss_pred HHHHHHHHHhC------------CCCeEEEcCCCCHHHHHHHHHHHhc-CCCCEEEEeccccCCCCCCCccEEEEcCCCC
Q 013176 285 CDQVTRQLRMD------------GWPALSIHGDKNQSERDWVLAEFRS-GRSPIMTATDVAARGLDVKDIKCVVNYDFPT 351 (448)
Q Consensus 285 ~~~l~~~L~~~------------~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~vLv~T~~~~~Gidi~~~~~Vi~~~~p~ 351 (448)
++.+++.|++. |.....+|++++.++|.++++.|++ |+.+|||||+++++|+|+|++++||+||+|+
T Consensus 403 ~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~ 482 (556)
T 4a2p_A 403 VSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSG 482 (556)
T ss_dssp HHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEEEETCCS
T ss_pred HHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeCCCC
Confidence 99999999875 4445566778999999999999999 9999999999999999999999999999999
Q ss_pred ChhhhhhcccccCCCCCCceEEEEecCCChH
Q 013176 352 SLEDYVHRIGRTGRAGARGTAFTFFTHSNAK 382 (448)
Q Consensus 352 s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~ 382 (448)
|+.+|+||+|| ||. +.|.+++++...+.+
T Consensus 483 s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~ 511 (556)
T 4a2p_A 483 NVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 511 (556)
T ss_dssp CHHHHHHC----------CCEEEEESCHHHH
T ss_pred CHHHHHHhcCC-CCC-CCceEEEEEeCcchH
Confidence 99999999999 998 889999999876553
No 23
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=3.1e-46 Score=383.84 Aligned_cols=336 Identities=21% Similarity=0.298 Sum_probs=259.8
Q ss_pred ccccCC--CCHHHHHHHHHCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEE
Q 013176 28 IFQEAN--FPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLV 105 (448)
Q Consensus 28 ~~~~~~--l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vli 105 (448)
+|++++ +++.+.+.++.+||..|+|+|.++++.+.+++++++++|||+|||+++.++++..+.. +.+++|
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~--------~~~~l~ 73 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK--------GGKSLY 73 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT--------TCCEEE
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh--------CCcEEE
Confidence 577888 9999999999999999999999999999999999999999999999999999988664 457999
Q ss_pred EcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccc
Q 013176 106 LAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADR 185 (448)
Q Consensus 106 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~ 185 (448)
++|+++|+.|+.+.++.+. ..++++..++|+...... ....++|+|+||+++...+.+....+.++++||+||+|.
T Consensus 74 i~P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~ 149 (702)
T 2p6r_A 74 VVPLRALAGEKYESFKKWE-KIGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHL 149 (702)
T ss_dssp EESSHHHHHHHHHHHTTTT-TTTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGG
T ss_pred EeCcHHHHHHHHHHHHHHH-hcCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeee
Confidence 9999999999999996554 347888888887655332 224689999999999998887666688899999999999
Q ss_pred cccCCCHHHHHHHHHHc---CCCcceEEEeccCchHHHHHHHHHcCCCeEEEeCCccccccc--CcceEEEEecch----
Q 013176 186 MLDMGFEPQIRKIVTQI---RPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQ--SINQVVEVVTEA---- 256 (448)
Q Consensus 186 ~~~~~~~~~~~~~~~~~---~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~---- 256 (448)
+.++++...+..++..+ .++.++++||||+++ ...+.. ++..+. +........... ............
T Consensus 150 l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~-~l~~~~-~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~ 226 (702)
T 2p6r_A 150 LDSEKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAE-WLDADY-YVSDWRPVPLVEGVLCEGTLELFDGAFSTS 226 (702)
T ss_dssp GGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHH-HTTCEE-EECCCCSSCEEEEEECSSEEEEEETTEEEE
T ss_pred cCCCCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHH-HhCCCc-ccCCCCCccceEEEeeCCeeeccCcchhhh
Confidence 99887777777766555 578999999999975 344444 443221 111100000000 000001111111
Q ss_pred ---hHHHHHHHHHHhhhcCCcEEEEecchhHHHHHHHHHHhC------------------------------CCCeEEEc
Q 013176 257 ---EKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMD------------------------------GWPALSIH 303 (448)
Q Consensus 257 ---~~~~~l~~~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~------------------------------~~~~~~~~ 303 (448)
.....+.+.+ ..++++||||++++.++.+++.|.+. ...+..+|
T Consensus 227 ~~~~~~~~~~~~~---~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h 303 (702)
T 2p6r_A 227 RRVKFEELVEECV---AENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHH 303 (702)
T ss_dssp EECCHHHHHHHHH---HTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEEC
T ss_pred hhhhHHHHHHHHH---hcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEec
Confidence 1333343333 35789999999999999999988753 13578899
Q ss_pred CCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCCCccEEEE----cC---CCCChhhhhhcccccCCCCC--CceEEE
Q 013176 304 GDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVKDIKCVVN----YD---FPTSLEDYVHRIGRTGRAGA--RGTAFT 374 (448)
Q Consensus 304 ~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~Vi~----~~---~p~s~~~~~Q~~GR~~R~g~--~g~~~~ 374 (448)
++++.++|..+++.|++|..+|||||+++++|+|+|++++||+ || .|.+..+|.||+||+||.|. .|.|++
T Consensus 304 ~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~ 383 (702)
T 2p6r_A 304 AGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAII 383 (702)
T ss_dssp TTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEE
T ss_pred CCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEE
Confidence 9999999999999999999999999999999999999999998 65 68899999999999999884 688898
Q ss_pred EecCCCh
Q 013176 375 FFTHSNA 381 (448)
Q Consensus 375 ~~~~~~~ 381 (448)
++.+.+.
T Consensus 384 l~~~~~~ 390 (702)
T 2p6r_A 384 IVGKRDR 390 (702)
T ss_dssp ECCGGGH
T ss_pred EecCccH
Confidence 8887653
No 24
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=2.6e-45 Score=369.14 Aligned_cols=333 Identities=20% Similarity=0.258 Sum_probs=232.4
Q ss_pred CCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCC
Q 013176 49 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAG 128 (448)
Q Consensus 49 ~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~ 128 (448)
.|+|+|.++++.++.++++++.+|||+|||++|+++++..+..... ..+.++||++|+++|+.|+.+.++++....+
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~---~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 80 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPC---GQKGKVVFFANQIPVYEQQATVFSRYFERLG 80 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS---SCCCCEEEECSSHHHHHHHHHHHHHHHHTTT
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhccc---CCCCEEEEEeCCHHHHHHHHHHHHHHhccCC
Confidence 7999999999999999999999999999999999999998876432 2366799999999999999999999988788
Q ss_pred ceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHcccc-CCCCccEEEEecccccccCC-CHHHHHHHHHHc----
Q 013176 129 IRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHT-NLRRVTYLVLDEADRMLDMG-FEPQIRKIVTQI---- 202 (448)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~-~~~~~~~iIvDE~h~~~~~~-~~~~~~~~~~~~---- 202 (448)
+++..++|+.........+..+++|+|+||++|...+..... .+.++++|||||||++.+.+ +...+..++...
T Consensus 81 ~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~ 160 (555)
T 3tbk_A 81 YNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGES 160 (555)
T ss_dssp CCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSSC
T ss_pred cEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhccc
Confidence 999999999877777677777799999999999999887766 68889999999999998765 223333333322
Q ss_pred -CCCcceEEEeccCchH--------HHHHH--HHHcCCCeEEEeCCcc-c----ccccCcceEEEE--------------
Q 013176 203 -RPDRQTLYWSATWPRE--------VETLA--RQFLRNPYKVIIGSLE-L----KANQSINQVVEV-------------- 252 (448)
Q Consensus 203 -~~~~~~v~~SAT~~~~--------~~~~~--~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~-------------- 252 (448)
.+..+++++|||+... ...+. ...+.... +...... . ............
T Consensus 161 ~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (555)
T 3tbk_A 161 RDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASV-IATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIISQ 239 (555)
T ss_dssp CSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSE-EECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHHHH
T ss_pred cCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCee-eeccccCHHHHHhhcCCCceEEEEecCcccChHHHHHHH
Confidence 2457899999998542 11111 11111111 1100000 0 000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 013176 253 -------------------------------------------------------------------------------- 252 (448)
Q Consensus 253 -------------------------------------------------------------------------------- 252 (448)
T Consensus 240 ~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 319 (555)
T 3tbk_A 240 LMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISED 319 (555)
T ss_dssp HHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence
Q ss_pred -----------------------------------------------ecchhHHHHHHHHHHhhh---cCCcEEEEecch
Q 013176 253 -----------------------------------------------VTEAEKYNRLIKLLKEVM---DGSRILIFTETK 282 (448)
Q Consensus 253 -----------------------------------------------~~~~~~~~~l~~~l~~~~---~~~k~lVf~~~~ 282 (448)
.....|...+.+++.+.. .+.++||||+++
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~ 399 (555)
T 3tbk_A 320 AQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTR 399 (555)
T ss_dssp SCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSSH
T ss_pred hhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCcH
Confidence 001345566666665542 357999999999
Q ss_pred hHHHHHHHHHHhCC----C--------CeEEEcCCCCHHHHHHHHHHHhc-CCCCEEEEeccccCCCCCCCccEEEEcCC
Q 013176 283 KGCDQVTRQLRMDG----W--------PALSIHGDKNQSERDWVLAEFRS-GRSPIMTATDVAARGLDVKDIKCVVNYDF 349 (448)
Q Consensus 283 ~~~~~l~~~L~~~~----~--------~~~~~~~~~~~~~r~~~~~~f~~-g~~~vLv~T~~~~~Gidi~~~~~Vi~~~~ 349 (448)
.+++.+++.|+..+ + ....+||+|+.++|.++++.|++ |+.+|||||+++++|+|+|++++||+||+
T Consensus 400 ~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~ 479 (555)
T 3tbk_A 400 ALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEY 479 (555)
T ss_dssp HHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEEESC
T ss_pred HHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeCC
Confidence 99999999998763 3 34455669999999999999999 99999999999999999999999999999
Q ss_pred CCChhhhhhcccccCCCCCCceEEEEecCCChHHHHHH
Q 013176 350 PTSLEDYVHRIGRTGRAGARGTAFTFFTHSNAKFARDL 387 (448)
Q Consensus 350 p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l 387 (448)
|+|+.+|+||+|| ||. ..|.+++++.+.+......+
T Consensus 480 p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~~~ 515 (555)
T 3tbk_A 480 VGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKEKA 515 (555)
T ss_dssp CSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHHHHH
T ss_pred CCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHHHH
Confidence 9999999999999 998 88999999988766544433
No 25
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=1.8e-44 Score=375.35 Aligned_cols=334 Identities=20% Similarity=0.235 Sum_probs=211.6
Q ss_pred HCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013176 44 KLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (448)
Q Consensus 44 ~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~ 123 (448)
.+|+..|+|+|.++++.++.++++++++|||+|||++|+++++..+..... ..+.++||++|+++|+.|+.+.++++
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~---~~~~~~Lvl~Pt~~L~~Q~~~~~~~~ 319 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA---GRKAKVVFLATKVPVYEQQKNVFKHH 319 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS---SCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccc---cCCCeEEEEeCCHHHHHHHHHHHHHh
Confidence 457889999999999999999999999999999999999999998876421 22668999999999999999999999
Q ss_pred hcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHcccc-CCCCccEEEEecccccccCCCH-HHHHHHHHH
Q 013176 124 GSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHT-NLRRVTYLVLDEADRMLDMGFE-PQIRKIVTQ 201 (448)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~-~~~~~~~iIvDE~h~~~~~~~~-~~~~~~~~~ 201 (448)
....++++..++|+.........+..+++|+|+||++|.+.+..... .+.++++|||||||++...+.. ..+..+...
T Consensus 320 ~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~ 399 (797)
T 4a2q_A 320 FERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQ 399 (797)
T ss_dssp HGGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHH
T ss_pred cccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHHHH
Confidence 88778999999999877777777778899999999999999887766 6888999999999998876532 222233322
Q ss_pred c----CCCcceEEEeccCch-----------HHHHHHHH------------------HcCCCeEEEeCCccccccc----
Q 013176 202 I----RPDRQTLYWSATWPR-----------EVETLARQ------------------FLRNPYKVIIGSLELKANQ---- 244 (448)
Q Consensus 202 ~----~~~~~~v~~SAT~~~-----------~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~---- 244 (448)
. .+..+++++|||+.. .+..+... +...+..............
T Consensus 400 ~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (797)
T 4a2q_A 400 KFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAI 479 (797)
T ss_dssp HHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHH
T ss_pred hhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHH
Confidence 1 456789999999852 12111111 1111111111000000000
Q ss_pred ----------Ccce---------EEE------------------------------------------------------
Q 013176 245 ----------SINQ---------VVE------------------------------------------------------ 251 (448)
Q Consensus 245 ----------~~~~---------~~~------------------------------------------------------ 251 (448)
.... ...
T Consensus 480 ~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 559 (797)
T 4a2q_A 480 ISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIIS 559 (797)
T ss_dssp HHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 0000 000
Q ss_pred ------------------------------------------------EecchhHHHHHHHHHHhh---hcCCcEEEEec
Q 013176 252 ------------------------------------------------VVTEAEKYNRLIKLLKEV---MDGSRILIFTE 280 (448)
Q Consensus 252 ------------------------------------------------~~~~~~~~~~l~~~l~~~---~~~~k~lVf~~ 280 (448)
......|...|.+++.+. ..+.++||||+
T Consensus 560 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~ 639 (797)
T 4a2q_A 560 EDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAK 639 (797)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEES
T ss_pred ccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEEC
Confidence 000133555566666543 34679999999
Q ss_pred chhHHHHHHHHHHhC------------CCCeEEEcCCCCHHHHHHHHHHHhc-CCCCEEEEeccccCCCCCCCccEEEEc
Q 013176 281 TKKGCDQVTRQLRMD------------GWPALSIHGDKNQSERDWVLAEFRS-GRSPIMTATDVAARGLDVKDIKCVVNY 347 (448)
Q Consensus 281 ~~~~~~~l~~~L~~~------------~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~vLv~T~~~~~Gidi~~~~~Vi~~ 347 (448)
++..+..+++.|++. |.....+|++++..+|..+++.|++ |+.+|||||+++++|||+|++++||+|
T Consensus 640 ~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~y 719 (797)
T 4a2q_A 640 TRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLY 719 (797)
T ss_dssp SHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEEEE
T ss_pred cHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEe
Confidence 999999999999873 4455667888999999999999999 999999999999999999999999999
Q ss_pred CCCCChhhhhhcccccCCCCCCceEEEEecCCChH
Q 013176 348 DFPTSLEDYVHRIGRTGRAGARGTAFTFFTHSNAK 382 (448)
Q Consensus 348 ~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~ 382 (448)
|+|+|+.+|+||+|| ||. +.|.+++++...+..
T Consensus 720 d~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~e 752 (797)
T 4a2q_A 720 EYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (797)
T ss_dssp SCCSCHHHHHTC---------CCCEEEEECCHHHH
T ss_pred CCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcHH
Confidence 999999999999999 999 889999999876543
No 26
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=7.7e-44 Score=352.73 Aligned_cols=323 Identities=23% Similarity=0.287 Sum_probs=249.3
Q ss_pred CCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCC
Q 013176 49 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAG 128 (448)
Q Consensus 49 ~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~ 128 (448)
.|+|+|.++++.+..+ ++++.+|||+|||++++++++..+.. .+.++||++|+++|+.||.+++.++.....
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~-------~~~~~liv~P~~~L~~q~~~~~~~~~~~~~ 80 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK-------YGGKVLMLAPTKPLVLQHAESFRRLFNLPP 80 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH-------SCSCEEEECSSHHHHHHHHHHHHHHBCSCG
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc-------CCCeEEEEECCHHHHHHHHHHHHHHhCcch
Confidence 7999999999999998 99999999999999999998887652 256799999999999999999999865445
Q ss_pred ceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCCCHHHHHHHHHHcCCCcce
Q 013176 129 IRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQT 208 (448)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~ 208 (448)
.++..++|+..... .......++|+|+||+.|...+......+.++++||+||||++.+......+...+....+..++
T Consensus 81 ~~v~~~~g~~~~~~-~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~ 159 (494)
T 1wp9_A 81 EKIVALTGEKSPEE-RSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLV 159 (494)
T ss_dssp GGEEEECSCSCHHH-HHHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCE
T ss_pred hheEEeeCCcchhh-hhhhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeE
Confidence 57888888766543 33334468999999999999888777788899999999999998665444455555555678899
Q ss_pred EEEeccCchHHH---HHHHHHcCCCeEEEeCCcccccccC---cc-eEEEE-----------------------------
Q 013176 209 LYWSATWPREVE---TLARQFLRNPYKVIIGSLELKANQS---IN-QVVEV----------------------------- 252 (448)
Q Consensus 209 v~~SAT~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~----------------------------- 252 (448)
+++|||+..+.. .+...+........ .......... .. .....
T Consensus 160 l~lTaTp~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (494)
T 1wp9_A 160 IGLTASPGSTPEKIMEVINNLGIEHIEYR-SENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGL 238 (494)
T ss_dssp EEEESCSCSSHHHHHHHHHHTTCCEEEEC-CTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred EEEecCCCCCcHHHHHHHHhcChheeecc-CCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999974332 33332221111110 0000000000 00 00000
Q ss_pred --------------------------------------------------------------------------------
Q 013176 253 -------------------------------------------------------------------------------- 252 (448)
Q Consensus 253 -------------------------------------------------------------------------------- 252 (448)
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 318 (494)
T 1wp9_A 239 LESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKE 318 (494)
T ss_dssp SSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred ccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhh
Confidence
Q ss_pred --------------------ecchhHHHHHHHHHHhhh---cCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcC-----
Q 013176 253 --------------------VTEAEKYNRLIKLLKEVM---DGSRILIFTETKKGCDQVTRQLRMDGWPALSIHG----- 304 (448)
Q Consensus 253 --------------------~~~~~~~~~l~~~l~~~~---~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~----- 304 (448)
.....|...+.+++.+.. .+.++||||+++..+..+++.|++.++.+..+||
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~ 398 (494)
T 1wp9_A 319 IFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKE 398 (494)
T ss_dssp HHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-
T ss_pred hhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEecccccc
Confidence 022335566667776653 5779999999999999999999999999999999
Q ss_pred ---CCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCCCccEEEEcCCCCChhhhhhcccccCCCCCCceEEEEecCCCh
Q 013176 305 ---DKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVKDIKCVVNYDFPTSLEDYVHRIGRTGRAGARGTAFTFFTHSNA 381 (448)
Q Consensus 305 ---~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 381 (448)
+++.++|.++++.|++|+.+|||+|+++++|+|+|++++||++|+|+++..|.||+||++|.|+ |.++.++.+.+.
T Consensus 399 ~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t~ 477 (494)
T 1wp9_A 399 NDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGTR 477 (494)
T ss_dssp ------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTSH
T ss_pred ccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCCH
Confidence 9999999999999999999999999999999999999999999999999999999999999988 999999988754
Q ss_pred H
Q 013176 382 K 382 (448)
Q Consensus 382 ~ 382 (448)
+
T Consensus 478 e 478 (494)
T 1wp9_A 478 D 478 (494)
T ss_dssp H
T ss_pred H
Confidence 3
No 27
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.3e-45 Score=384.04 Aligned_cols=329 Identities=17% Similarity=0.204 Sum_probs=253.8
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEc
Q 013176 28 IFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLA 107 (448)
Q Consensus 28 ~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~ 107 (448)
.|+..++++.+...+....+..|+|+|.++++.+..++++++++|||||||++|.++++..+.. +.+++|++
T Consensus 163 ~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~--------g~rvlvl~ 234 (1108)
T 3l9o_A 163 NYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN--------KQRVIYTS 234 (1108)
T ss_dssp CCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHT--------TCEEEEEE
T ss_pred CcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhc--------CCeEEEEc
Confidence 4555666665555554444448999999999999999999999999999999999999988754 67899999
Q ss_pred CcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccc
Q 013176 108 PTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRML 187 (448)
Q Consensus 108 P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~ 187 (448)
|+++|+.|+++.+.++.. .+..++|+... ...++|+|+||+.|.+.+.+....+.++++|||||||++.
T Consensus 235 PtraLa~Q~~~~l~~~~~----~VglltGd~~~-------~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~ 303 (1108)
T 3l9o_A 235 PIKALSNQKYRELLAEFG----DVGLMTGDITI-------NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMR 303 (1108)
T ss_dssp SSHHHHHHHHHHHHHHTS----SEEEECSSCBC-------CCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTT
T ss_pred CcHHHHHHHHHHHHHHhC----CccEEeCcccc-------CCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhcc
Confidence 999999999999998754 46667776653 2458999999999999988877778889999999999999
Q ss_pred cCCCHHHHHHHHHHcCCCcceEEEeccCchH--HHHHHHHHcCCCeEEEeCCcccccccCcceEEE---------Eecc-
Q 013176 188 DMGFEPQIRKIVTQIRPDRQTLYWSATWPRE--VETLARQFLRNPYKVIIGSLELKANQSINQVVE---------VVTE- 255 (448)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~- 255 (448)
++++...+..++..+++..++++||||+++. +..........+..+........ .+..++. ....
T Consensus 304 d~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~---pl~~~~~~~~~~~~~~~vd~~ 380 (1108)
T 3l9o_A 304 DKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPT---PLQHYLFPAHGDGIYLVVDEK 380 (1108)
T ss_dssp SHHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSS---CEEEEEEETTSSCCEEEEETT
T ss_pred ccchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcc---cceEEEeecCCcceeeeeccc
Confidence 9888999999999999999999999998764 33444555555544443221111 1111110 0000
Q ss_pred ---------------------------------------------hhHHHHHHHHHHhhhcCCcEEEEecchhHHHHHHH
Q 013176 256 ---------------------------------------------AEKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTR 290 (448)
Q Consensus 256 ---------------------------------------------~~~~~~l~~~l~~~~~~~k~lVf~~~~~~~~~l~~ 290 (448)
......++..+.. ....++||||+++..|+.++.
T Consensus 381 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~-~~~~~vIVF~~sr~~~e~la~ 459 (1108)
T 3l9o_A 381 STFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWK-KKYNPVIVFSFSKRDCEELAL 459 (1108)
T ss_dssp TEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHH-TTCCCEEEEESCHHHHHHHHH
T ss_pred cchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHh-cCCCCEEEEeCcHHHHHHHHH
Confidence 2222233333333 234589999999999999999
Q ss_pred HHHhCCCC---------------------------------------eEEEcCCCCHHHHHHHHHHHhcCCCCEEEEecc
Q 013176 291 QLRMDGWP---------------------------------------ALSIHGDKNQSERDWVLAEFRSGRSPIMTATDV 331 (448)
Q Consensus 291 ~L~~~~~~---------------------------------------~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~ 331 (448)
.|...++. +..+|++|++.+|..+++.|++|.++|||||++
T Consensus 460 ~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~v 539 (1108)
T 3l9o_A 460 KMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATET 539 (1108)
T ss_dssp HTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESC
T ss_pred HHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcH
Confidence 98653221 789999999999999999999999999999999
Q ss_pred ccCCCCCCCccEEEEcCCCC--------ChhhhhhcccccCCCC--CCceEEEEecCC
Q 013176 332 AARGLDVKDIKCVVNYDFPT--------SLEDYVHRIGRTGRAG--ARGTAFTFFTHS 379 (448)
Q Consensus 332 ~~~Gidi~~~~~Vi~~~~p~--------s~~~~~Q~~GR~~R~g--~~g~~~~~~~~~ 379 (448)
+++|||+|++++||+++.|+ ++.+|+||+||+||.| ..|.+++++.+.
T Consensus 540 la~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~ 597 (1108)
T 3l9o_A 540 FSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 597 (1108)
T ss_dssp CCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCC
T ss_pred HhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCC
Confidence 99999999999999877643 6667999999999999 578888887765
No 28
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.8e-43 Score=366.94 Aligned_cols=313 Identities=18% Similarity=0.245 Sum_probs=248.3
Q ss_pred HHCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013176 43 AKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALK 122 (448)
Q Consensus 43 ~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~ 122 (448)
..++| .|+++|.++++.+..++++++++|||+|||++|.++++..+.. +.+++|++|+++|+.|+.+.+.+
T Consensus 81 ~~~~f-~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~--------g~rvL~l~PtkaLa~Q~~~~l~~ 151 (1010)
T 2xgj_A 81 RTYPF-TLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN--------KQRVIYTSPIKALSNQKYRELLA 151 (1010)
T ss_dssp CCCSS-CCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHT--------TCEEEEEESSHHHHHHHHHHHHH
T ss_pred HhCCC-CCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhcc--------CCeEEEECChHHHHHHHHHHHHH
Confidence 45678 6999999999999999999999999999999999988887654 67899999999999999999998
Q ss_pred hhcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCCCHHHHHHHHHHc
Q 013176 123 FGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQI 202 (448)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~ 202 (448)
+.. ++..++|+.... ..++|+|+||+.|.+.+.+....+.++++|||||+|++.++.++..+..++..+
T Consensus 152 ~~~----~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l 220 (1010)
T 2xgj_A 152 EFG----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILL 220 (1010)
T ss_dssp HHS----CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHS
T ss_pred HhC----CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhc
Confidence 764 566677766543 257899999999998888777778899999999999999998899999999999
Q ss_pred CCCcceEEEeccCchHHH--HHHHHHcCCCeEEEeCCcccccccCcceEEEE---------ecc----------------
Q 013176 203 RPDRQTLYWSATWPREVE--TLARQFLRNPYKVIIGSLELKANQSINQVVEV---------VTE---------------- 255 (448)
Q Consensus 203 ~~~~~~v~~SAT~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~---------------- 255 (448)
++..+++++|||+++..+ ..+......+..+....... ..+.+++.. ...
T Consensus 221 ~~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp---~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 297 (1010)
T 2xgj_A 221 PDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRP---TPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASI 297 (1010)
T ss_dssp CTTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCCS---SCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTC
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCc---ccceEEEEecCCcceeeeeccccccchHHHHHHHHHH
Confidence 999999999999976432 22222334444443322111 111111110 000
Q ss_pred ------------------------------hhHHHHHHHHHHhhhcCCcEEEEecchhHHHHHHHHHHhCCCC-------
Q 013176 256 ------------------------------AEKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWP------- 298 (448)
Q Consensus 256 ------------------------------~~~~~~l~~~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~~~~------- 298 (448)
......+...+.. ....++||||+++..|+.+++.|...++.
T Consensus 298 ~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~-~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~ 376 (1010)
T 2xgj_A 298 SNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWK-KKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEA 376 (1010)
T ss_dssp C------------------------------CHHHHHHHHHHH-HTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHH
T ss_pred hhhhcccccccccccccccccccccccccchHHHHHHHHHHHh-cCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHH
Confidence 1112223333332 13458999999999999999998764332
Q ss_pred --------------------------------eEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCCCccEEEE
Q 013176 299 --------------------------------ALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVKDIKCVVN 346 (448)
Q Consensus 299 --------------------------------~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~Vi~ 346 (448)
+..+||++++.+|..+++.|++|.++|||||+++++|||+|++++||+
T Consensus 377 i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~ 456 (1010)
T 2xgj_A 377 LTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFT 456 (1010)
T ss_dssp HHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEES
T ss_pred HHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEe
Confidence 788999999999999999999999999999999999999999999999
Q ss_pred ----cCC----CCChhhhhhcccccCCCCC--CceEEEEecCC
Q 013176 347 ----YDF----PTSLEDYVHRIGRTGRAGA--RGTAFTFFTHS 379 (448)
Q Consensus 347 ----~~~----p~s~~~~~Q~~GR~~R~g~--~g~~~~~~~~~ 379 (448)
||. |.++.+|+||+||+||.|. .|.+++++.+.
T Consensus 457 ~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~ 499 (1010)
T 2xgj_A 457 SVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 499 (1010)
T ss_dssp CSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSC
T ss_pred CCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCC
Confidence 998 8899999999999999987 48999998765
No 29
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=5.1e-44 Score=377.92 Aligned_cols=325 Identities=21% Similarity=0.293 Sum_probs=256.6
Q ss_pred HHHH-HCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHH
Q 013176 40 EVIA-KLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQE 118 (448)
Q Consensus 40 ~~~~-~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~ 118 (448)
+.+. .+|| .|+|+|.++++.++.++++++++|||||||++|+++++..+.. +++++|++||++|+.|+.+
T Consensus 69 ~~~~~~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~~--------~~~~Lil~PtreLa~Q~~~ 139 (1104)
T 4ddu_A 69 SFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARK--------GKKSALVFPTVTLVKQTLE 139 (1104)
T ss_dssp HHHHHHSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHTT--------TCCEEEEESSHHHHHHHHH
T ss_pred HHHHHhcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHhc--------CCeEEEEechHHHHHHHHH
Confidence 3443 4799 7999999999999999999999999999999888888776633 6789999999999999999
Q ss_pred HHHHhhcCCCceEEEEEcCCCc---hHhHHHHhcC-CcEEEEccHHHHHHHHccccCCCCccEEEEeccccccc------
Q 013176 119 EALKFGSRAGIRSTCIYGGAPK---GPQIRDLRRG-VEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLD------ 188 (448)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~------ 188 (448)
.+++++ ..++++..++|+.+. ..+...+..+ ++|+|+||++|.+++.. ..+.++++|||||||++..
T Consensus 140 ~l~~l~-~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~D 216 (1104)
T 4ddu_A 140 RLQKLA-DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNID 216 (1104)
T ss_dssp HHHTTS-CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHH
T ss_pred HHHHhh-CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccch
Confidence 999987 668899999999887 5556667665 99999999999887764 5567899999999987654
Q ss_pred -----CCCHHH-HHHHHHHcC-----------CCcceEEEeccC-chHHH-HHHHHHcCCCeEEEeCCcccccccCcceE
Q 013176 189 -----MGFEPQ-IRKIVTQIR-----------PDRQTLYWSATW-PREVE-TLARQFLRNPYKVIIGSLELKANQSINQV 249 (448)
Q Consensus 189 -----~~~~~~-~~~~~~~~~-----------~~~~~v~~SAT~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (448)
++|... +..++..++ +..|++++|||+ +..+. .+....+. +.+... ......+.+.
T Consensus 217 r~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~~-~~~~~~i~~~ 291 (1104)
T 4ddu_A 217 TLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRL-VSVARNITHV 291 (1104)
T ss_dssp HHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCBC-CCCCCCEEEE
T ss_pred hhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEeccC-CCCcCCceeE
Confidence 667666 788887776 788999999994 44333 22233322 111111 1122233333
Q ss_pred EEEecchhHHHHHHHHHHhhhcCCcEEEEecchhHHHHHHHHHHhCCCCeE-EEcCCCCHHHHHHHHHHHhcCCCCEEEE
Q 013176 250 VEVVTEAEKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPAL-SIHGDKNQSERDWVLAEFRSGRSPIMTA 328 (448)
Q Consensus 250 ~~~~~~~~~~~~l~~~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~~~r~~~~~~f~~g~~~vLv~ 328 (448)
+... ++...+.+++.. .+.++||||++++.++.+++.|++.++++. .+|| +|.+ ++.|++|+.+||||
T Consensus 292 ~~~~---~k~~~L~~ll~~--~~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg-----~rr~-l~~F~~G~~~VLVa 360 (1104)
T 4ddu_A 292 RISS---RSKEKLVELLEI--FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSE-----FEKN-FEDFKVGKINILIG 360 (1104)
T ss_dssp EESC---CCHHHHHHHHHH--HCSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-----HHHH-HHHHHHTSCSEEEE
T ss_pred EEec---CHHHHHHHHHHh--cCCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-----cHHH-HHHHHCCCCCEEEE
Confidence 3222 456667777776 357899999999999999999999999998 9998 2555 99999999999999
Q ss_pred ----eccccCCCCCCC-ccEEEEcCCCC----------------------------------------------------
Q 013176 329 ----TDVAARGLDVKD-IKCVVNYDFPT---------------------------------------------------- 351 (448)
Q Consensus 329 ----T~~~~~Gidi~~-~~~Vi~~~~p~---------------------------------------------------- 351 (448)
|+++++|+|+|+ +++||++|+|.
T Consensus 361 tas~TdvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~ 440 (1104)
T 4ddu_A 361 VQAYYGKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEK 440 (1104)
T ss_dssp ETTTHHHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHH
T ss_pred ecCCCCeeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 999999999999 99999999998
Q ss_pred --------------------ChhhhhhcccccCCCCCCc--eEEEEecCCChHHHHHHHHHHH
Q 013176 352 --------------------SLEDYVHRIGRTGRAGARG--TAFTFFTHSNAKFARDLIKILQ 392 (448)
Q Consensus 352 --------------------s~~~~~Q~~GR~~R~g~~g--~~~~~~~~~~~~~~~~l~~~~~ 392 (448)
++.+|+||+||+||.+..| .++.++..++.+.++.|.+.+.
T Consensus 441 i~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~~d~~~~~~l~~~~~ 503 (1104)
T 4ddu_A 441 VKEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRLL 503 (1104)
T ss_dssp HHHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECCCHHHHHHHHHHHH
T ss_pred HhhccceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEEecHHHHHHHHHHHh
Confidence 7789999999999975433 3444444577888888777765
No 30
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=3.5e-44 Score=364.89 Aligned_cols=346 Identities=21% Similarity=0.261 Sum_probs=255.3
Q ss_pred HHHHHHHHHCCCCCCcHHHHhHHHHhhcC------CcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCc
Q 013176 36 DYCLEVIAKLGFVEPTPIQAQGWPMALKG------RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPT 109 (448)
Q Consensus 36 ~~l~~~~~~~~~~~~~~~Q~~~i~~~~~~------~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~ 109 (448)
+.+.+.++.++| .|+++|+++++.+..+ +++++++|||||||++|+++++..+.. +.+++|++||
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~--------g~qvlvlaPt 426 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA--------GFQTAFMVPT 426 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH--------TSCEEEECSC
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc--------CCeEEEEeCc
Confidence 566677789999 9999999999998875 589999999999999999999988765 5679999999
Q ss_pred HHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHh---HHHHhc-CCcEEEEccHHHHHHHHccccCCCCccEEEEecccc
Q 013176 110 RELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQ---IRDLRR-GVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADR 185 (448)
Q Consensus 110 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~ 185 (448)
++|+.|+.+.+.++....++++..++|+.+..+. +..+.. .++|+|+||+.|.+ ...+.++++||+||+|+
T Consensus 427 r~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVIDEaHr 501 (780)
T 1gm5_A 427 SILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIIDEQHR 501 (780)
T ss_dssp HHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEESCCC
T ss_pred HHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEecccch
Confidence 9999999999999988888999999998876543 333444 48999999987743 45678899999999999
Q ss_pred cccCCCHHHHHHHHHHcCCCcceEEEeccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceEEEEecchhHHHHHHHH
Q 013176 186 MLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKL 265 (448)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 265 (448)
+.... ...+.......++++||||+.+....+. ..++.....+...... ...+. ...........+.+.
T Consensus 502 ~g~~q-----r~~l~~~~~~~~vL~mSATp~p~tl~~~--~~g~~~~s~i~~~p~~-r~~i~---~~~~~~~~~~~l~~~ 570 (780)
T 1gm5_A 502 FGVKQ-----REALMNKGKMVDTLVMSATPIPRSMALA--FYGDLDVTVIDEMPPG-RKEVQ---TMLVPMDRVNEVYEF 570 (780)
T ss_dssp C----------CCCCSSSSCCCEEEEESSCCCHHHHHH--HTCCSSCEEECCCCSS-CCCCE---ECCCCSSTHHHHHHH
T ss_pred hhHHH-----HHHHHHhCCCCCEEEEeCCCCHHHHHHH--HhCCcceeeeeccCCC-CcceE---EEEeccchHHHHHHH
Confidence 63221 1122222356899999999877544332 3333322222211111 11111 111222334445555
Q ss_pred HHh-hhcCCcEEEEecchh--------HHHHHHHHHHh---CCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEecccc
Q 013176 266 LKE-VMDGSRILIFTETKK--------GCDQVTRQLRM---DGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAA 333 (448)
Q Consensus 266 l~~-~~~~~k~lVf~~~~~--------~~~~l~~~L~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~ 333 (448)
+.+ ...+.+++|||++++ .+..+++.|++ .+..+..+||+|+.++|..+++.|++|+.+|||||++++
T Consensus 571 i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie 650 (780)
T 1gm5_A 571 VRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIE 650 (780)
T ss_dssp HHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCC
T ss_pred HHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCC
Confidence 543 345779999999764 57888888988 467899999999999999999999999999999999999
Q ss_pred CCCCCCCccEEEEcCCCC-ChhhhhhcccccCCCCCCceEEEEecCCChHHHHHHHHHHHHhCCCCcHHHHhhhh
Q 013176 334 RGLDVKDIKCVVNYDFPT-SLEDYVHRIGRTGRAGARGTAFTFFTHSNAKFARDLIKILQEAGQIVSPALSGLAR 407 (448)
Q Consensus 334 ~Gidi~~~~~Vi~~~~p~-s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~ 407 (448)
+|+|+|++++||++++|. +..+|.|++||+||.|+.|.|++++.+.+... ....+.+.+....+.....++..
T Consensus 651 ~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~~~~-~~rl~~l~~~~dgf~iae~dL~~ 724 (780)
T 1gm5_A 651 VGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEEA-MERLRFFTLNTDGFKIAEYDLKT 724 (780)
T ss_dssp SCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHHH-HHHHHHHHTCCCSHHHHHHHHHS
T ss_pred ccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCCChHH-HHHHHHHHhhhccchhhHhhHhc
Confidence 999999999999999986 78999999999999999999999988444443 33445555554444433344443
No 31
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=1.6e-43 Score=371.73 Aligned_cols=333 Identities=20% Similarity=0.257 Sum_probs=210.4
Q ss_pred HCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013176 44 KLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (448)
Q Consensus 44 ~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~ 123 (448)
-.|+..|+|+|.++++.++.++++++.+|||+|||++|+++++..+..... ..+.++||++|+++|+.|+.+.++++
T Consensus 243 l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~---~~~~~vLvl~Pt~~L~~Q~~~~~~~~ 319 (936)
T 4a2w_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA---GRKAKVVFLATKVPVYEQQKNVFKHH 319 (936)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCS---SCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccc---cCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 345779999999999999999999999999999999999999888766421 22567999999999999999999999
Q ss_pred hcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHcccc-CCCCccEEEEecccccccCC-CHHHHHHHHHH
Q 013176 124 GSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHT-NLRRVTYLVLDEADRMLDMG-FEPQIRKIVTQ 201 (448)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~-~~~~~~~iIvDE~h~~~~~~-~~~~~~~~~~~ 201 (448)
....++++..++|+.........+...++|+|+||++|.+.+..... .+.++++||+||||++...+ +...+..+...
T Consensus 320 ~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~ 399 (936)
T 4a2w_A 320 FERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQ 399 (936)
T ss_dssp HHTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHH
T ss_pred hcccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHHHH
Confidence 88778999999999876666666666789999999999999887766 67889999999999988765 22223233322
Q ss_pred c----CCCcceEEEeccCch-----------HHHHHHH------------------HHcCCCeEEEeCCccccccc----
Q 013176 202 I----RPDRQTLYWSATWPR-----------EVETLAR------------------QFLRNPYKVIIGSLELKANQ---- 244 (448)
Q Consensus 202 ~----~~~~~~v~~SAT~~~-----------~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~---- 244 (448)
. .+..+++++|||+.. .+..+.. .+...+..............
T Consensus 400 ~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~ 479 (936)
T 4a2w_A 400 KFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAI 479 (936)
T ss_dssp HHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHH
T ss_pred hhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHHH
Confidence 1 455789999999842 1111111 11122221111100000000
Q ss_pred ----------Ccc---------eEEE------------------------------------------------------
Q 013176 245 ----------SIN---------QVVE------------------------------------------------------ 251 (448)
Q Consensus 245 ----------~~~---------~~~~------------------------------------------------------ 251 (448)
... ....
T Consensus 480 l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~ 559 (936)
T 4a2w_A 480 ISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIIS 559 (936)
T ss_dssp HHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 000 0000
Q ss_pred ------------------------------------------------EecchhHHHHHHHHHHhhh---cCCcEEEEec
Q 013176 252 ------------------------------------------------VVTEAEKYNRLIKLLKEVM---DGSRILIFTE 280 (448)
Q Consensus 252 ------------------------------------------------~~~~~~~~~~l~~~l~~~~---~~~k~lVf~~ 280 (448)
......|...+.+++.+.. .+.++||||+
T Consensus 560 ~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~ 639 (936)
T 4a2w_A 560 EDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAK 639 (936)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEES
T ss_pred cchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeC
Confidence 0001334555666666542 4679999999
Q ss_pred chhHHHHHHHHHHhC------------CCCeEEEcCCCCHHHHHHHHHHHhc-CCCCEEEEeccccCCCCCCCccEEEEc
Q 013176 281 TKKGCDQVTRQLRMD------------GWPALSIHGDKNQSERDWVLAEFRS-GRSPIMTATDVAARGLDVKDIKCVVNY 347 (448)
Q Consensus 281 ~~~~~~~l~~~L~~~------------~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~vLv~T~~~~~Gidi~~~~~Vi~~ 347 (448)
++..++.+++.|++. |.....+|++|+..+|.++++.|++ |+.+|||||+++++|||+|++++||+|
T Consensus 640 t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~y 719 (936)
T 4a2w_A 640 TRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLY 719 (936)
T ss_dssp SHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEEEE
T ss_pred CHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEEe
Confidence 999999999999876 4445566888999999999999998 999999999999999999999999999
Q ss_pred CCCCChhhhhhcccccCCCCCCceEEEEecCCCh
Q 013176 348 DFPTSLEDYVHRIGRTGRAGARGTAFTFFTHSNA 381 (448)
Q Consensus 348 ~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 381 (448)
|+|+|+.+|+||+|| ||. ..|.+++++...+.
T Consensus 720 D~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~ 751 (936)
T 4a2w_A 720 EYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (936)
T ss_dssp SCCSCSHHHHCC---------CCCEEEEESCHHH
T ss_pred CCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCH
Confidence 999999999999999 998 78999999876544
No 32
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=1.5e-42 Score=345.93 Aligned_cols=323 Identities=20% Similarity=0.253 Sum_probs=250.8
Q ss_pred HCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013176 44 KLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (448)
Q Consensus 44 ~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~ 123 (448)
.+|| .|+|+|..+++.+++|+ +..++||+|||++|.+|++..... ++.++|++||++||.|..+++..+
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~--------g~~vlVltptreLA~qd~e~~~~l 147 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALT--------GKGVHVVTVNEYLASRDAEQMGKI 147 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTT--------SSCEEEEESSHHHHHHHHHHHHHH
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHc--------CCCEEEEeCCHHHHHHHHHHHHHH
Confidence 5899 99999999999999998 889999999999999999854332 457999999999999999999999
Q ss_pred hcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHH-HHHHHcc------ccCCCCccEEEEecccccc-cCC-----
Q 013176 124 GSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRL-IDMLEAQ------HTNLRRVTYLVLDEADRML-DMG----- 190 (448)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~~~~~------~~~~~~~~~iIvDE~h~~~-~~~----- 190 (448)
...+++++.+++|+.+... +....+++|+|+||+.| ++++... ...++.+.++|+||||.++ +.+
T Consensus 148 ~~~lgl~v~~i~gg~~~~~--r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplI 225 (844)
T 1tf5_A 148 FEFLGLTVGLNLNSMSKDE--KREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLI 225 (844)
T ss_dssp HHHTTCCEEECCTTSCHHH--HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEE
T ss_pred HhhcCCeEEEEeCCCCHHH--HHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchh
Confidence 9999999999999976543 33344689999999999 6665533 3457889999999999987 553
Q ss_pred ----------CHHHHHHHHHHcCC---------CcceE-----------------EEeccCch---HHHHHH--HHHcC-
Q 013176 191 ----------FEPQIRKIVTQIRP---------DRQTL-----------------YWSATWPR---EVETLA--RQFLR- 228 (448)
Q Consensus 191 ----------~~~~~~~~~~~~~~---------~~~~v-----------------~~SAT~~~---~~~~~~--~~~~~- 228 (448)
+...+..+...+++ .++++ ++|||.+. .+...+ ..++.
T Consensus 226 isg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~ 305 (844)
T 1tf5_A 226 ISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQK 305 (844)
T ss_dssp EEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCB
T ss_pred hcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhc
Confidence 45677788887763 56666 78999753 222221 11221
Q ss_pred CCeEEE------eCC------------------------------c----------------------------------
Q 013176 229 NPYKVI------IGS------------------------------L---------------------------------- 238 (448)
Q Consensus 229 ~~~~~~------~~~------------------------------~---------------------------------- 238 (448)
+...+. +.. .
T Consensus 306 d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~ 385 (844)
T 1tf5_A 306 DVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFR 385 (844)
T ss_dssp TTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHH
T ss_pred CCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHH
Confidence 111110 000 0
Q ss_pred ----------ccccccCc--ceEEEEecchhHHHHHHHHHHhh-hcCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCC
Q 013176 239 ----------ELKANQSI--NQVVEVVTEAEKYNRLIKLLKEV-MDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGD 305 (448)
Q Consensus 239 ----------~~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~~-~~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~ 305 (448)
+...+... ...........|+..+.+.+.+. ..+.++||||+|++.++.+++.|++.++++.++|++
T Consensus 386 ~iY~l~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~ 465 (844)
T 1tf5_A 386 NIYNMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAK 465 (844)
T ss_dssp HHHCCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSS
T ss_pred HHhCCceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCC
Confidence 00000000 01133446678888888888764 457789999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCC--------CccEEEEcCCCCChhhhhhcccccCCCCCCceEEEEec
Q 013176 306 KNQSERDWVLAEFRSGRSPIMTATDVAARGLDVK--------DIKCVVNYDFPTSLEDYVHRIGRTGRAGARGTAFTFFT 377 (448)
Q Consensus 306 ~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~--------~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~ 377 (448)
+.+.++..+.+.|+.| .|+|||+++++|+|++ +..+||+++.|.|...|.||+||+||.|.+|.+++|++
T Consensus 466 ~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs 543 (844)
T 1tf5_A 466 NHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLS 543 (844)
T ss_dssp CHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEE
T ss_pred ccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEec
Confidence 9888877666666554 6999999999999999 78899999999999999999999999999999999998
Q ss_pred CCCh
Q 013176 378 HSNA 381 (448)
Q Consensus 378 ~~~~ 381 (448)
..+.
T Consensus 544 ~eD~ 547 (844)
T 1tf5_A 544 MEDE 547 (844)
T ss_dssp TTSS
T ss_pred HHHH
Confidence 7765
No 33
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=6.3e-44 Score=368.13 Aligned_cols=326 Identities=24% Similarity=0.296 Sum_probs=225.7
Q ss_pred CCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHH-HHHHHHhhcCC
Q 013176 49 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQI-QEEALKFGSRA 127 (448)
Q Consensus 49 ~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~-~~~~~~~~~~~ 127 (448)
.|+|+|.++++.++.++++++.+|||+|||++|+++++..+..... .+.+.++||++|+++|+.|+ .++++++...
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~--~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~- 83 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKK--ASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK- 83 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHH--HTCCCCBCCEESCSHHHHHHHHHTHHHHHTT-
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccc--cCCCCeEEEEECCHHHHHHHHHHHHHHHcCc-
Confidence 7999999999999999999999999999999999999887755311 11236799999999999999 9999998765
Q ss_pred CceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHH------HccccCCCCccEEEEecccccccCC-CHHHHHHHHH
Q 013176 128 GIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDML------EAQHTNLRRVTYLVLDEADRMLDMG-FEPQIRKIVT 200 (448)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~------~~~~~~~~~~~~iIvDE~h~~~~~~-~~~~~~~~~~ 200 (448)
.+++..++|+.........+...++|+|+||+.|.+.+ ......+.++++|||||||++.... +...+..++.
T Consensus 84 ~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l~ 163 (699)
T 4gl2_A 84 WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLM 163 (699)
T ss_dssp TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHHH
T ss_pred CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHHH
Confidence 48889999988777766777778999999999999887 3444567889999999999886543 3333332222
Q ss_pred H----cC---------CCcceEEEeccCchH-----------HHHHHHHHc------------------CCCeEEEeCCc
Q 013176 201 Q----IR---------PDRQTLYWSATWPRE-----------VETLARQFL------------------RNPYKVIIGSL 238 (448)
Q Consensus 201 ~----~~---------~~~~~v~~SAT~~~~-----------~~~~~~~~~------------------~~~~~~~~~~~ 238 (448)
. .. +..+++++|||+... +..+...+- ..|........
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~ 243 (699)
T 4gl2_A 164 QKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIAD 243 (699)
T ss_dssp HHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEEEC
T ss_pred hhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEEcc
Confidence 1 11 567899999999862 111211111 11111110000
Q ss_pred cccc----------------------ccCcc-----e-------------------------------------------
Q 013176 239 ELKA----------------------NQSIN-----Q------------------------------------------- 248 (448)
Q Consensus 239 ~~~~----------------------~~~~~-----~------------------------------------------- 248 (448)
.... ..... .
T Consensus 244 ~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 323 (699)
T 4gl2_A 244 ATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDAY 323 (699)
T ss_dssp -----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred cccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 00000 0
Q ss_pred ------------------------EEEEec-------------------------chhHHHHHHHHHHhhh---c-CCcE
Q 013176 249 ------------------------VVEVVT-------------------------EAEKYNRLIKLLKEVM---D-GSRI 275 (448)
Q Consensus 249 ------------------------~~~~~~-------------------------~~~~~~~l~~~l~~~~---~-~~k~ 275 (448)
...... ...+...+.+++.+.. . +.++
T Consensus 324 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~~ 403 (699)
T 4gl2_A 324 THLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESARG 403 (699)
T ss_dssp HHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCCE
T ss_pred HHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCcE
Confidence 000000 0111222333343322 1 6799
Q ss_pred EEEecchhHHHHHHHHHHhC------CCCeEEEcCC--------CCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCCCc
Q 013176 276 LIFTETKKGCDQVTRQLRMD------GWPALSIHGD--------KNQSERDWVLAEFRSGRSPIMTATDVAARGLDVKDI 341 (448)
Q Consensus 276 lVf~~~~~~~~~l~~~L~~~------~~~~~~~~~~--------~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~ 341 (448)
||||+++..++.+++.|++. ++++..+||+ |+..+|.++++.|++|+.+|||||+++++|||+|++
T Consensus 404 IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~v 483 (699)
T 4gl2_A 404 IIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKEC 483 (699)
T ss_dssp EEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCSC
T ss_pred EEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCccccC
Confidence 99999999999999999987 8999999999 999999999999999999999999999999999999
Q ss_pred cEEEEcCCCCChhhhhhcccccCCCCCCceEEEEecCC
Q 013176 342 KCVVNYDFPTSLEDYVHRIGRTGRAGARGTAFTFFTHS 379 (448)
Q Consensus 342 ~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 379 (448)
++||+||+|+|+.+|+||+||++|.| +.++++....
T Consensus 484 ~~VI~~d~p~s~~~~~Qr~GRArr~g--~~~~l~~~~~ 519 (699)
T 4gl2_A 484 NIVIRYGLVTNEIAMVQARGRARADE--STYVLVAHSG 519 (699)
T ss_dssp CCCEEESCCCCHHHHHHHHTTSCSSS--CEEEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHcCCCCCCC--ceEEEEEeCC
Confidence 99999999999999999999986654 3334444433
No 34
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=5.6e-42 Score=364.66 Aligned_cols=322 Identities=20% Similarity=0.235 Sum_probs=250.5
Q ss_pred CCCHHHHHHH-HHCCCCCCcHHHHhHHHHhhc----CC--cEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEE
Q 013176 33 NFPDYCLEVI-AKLGFVEPTPIQAQGWPMALK----GR--DLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLV 105 (448)
Q Consensus 33 ~l~~~l~~~~-~~~~~~~~~~~Q~~~i~~~~~----~~--~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vli 105 (448)
..++...+.+ ..++| +++|+|.++++.++. ++ ++++++|||+|||++++++++..+.. +++++|
T Consensus 587 ~~~~~~~~~~~~~f~~-~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~--------g~~vlv 657 (1151)
T 2eyq_A 587 KHDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN--------HKQVAV 657 (1151)
T ss_dssp CCCHHHHHHHHHTCCS-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT--------TCEEEE
T ss_pred CCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh--------CCeEEE
Confidence 3444444444 56899 689999999999886 54 89999999999999999888876544 568999
Q ss_pred EcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHh---HHHHhc-CCcEEEEccHHHHHHHHccccCCCCccEEEEe
Q 013176 106 LAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQ---IRDLRR-GVEIVIATPGRLIDMLEAQHTNLRRVTYLVLD 181 (448)
Q Consensus 106 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvD 181 (448)
++||++|+.|+.+.+.++....++++..+++.....+. +..+.. .++|+|+||+.+. ....+.++++||||
T Consensus 658 lvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~l~lvIiD 732 (1151)
T 2eyq_A 658 LVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLGLLIVD 732 (1151)
T ss_dssp ECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEEEEEEE
T ss_pred EechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCccccccceEEEe
Confidence 99999999999999998877778888888776554333 333444 5899999997662 34567889999999
Q ss_pred cccccccCCCHHHHHHHHHHcCCCcceEEEeccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceEEEEecchhHHHH
Q 013176 182 EADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNR 261 (448)
Q Consensus 182 E~h~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (448)
|+|++ .......+..+.+..++++||||+.+....+....+.+.. .+.. .......+...+.... ....
T Consensus 733 EaH~~-----g~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~--~i~~-~~~~r~~i~~~~~~~~---~~~i 801 (1151)
T 2eyq_A 733 EEHRF-----GVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLS--IIAT-PPARRLAVKTFVREYD---SMVV 801 (1151)
T ss_dssp SGGGS-----CHHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEE--ECCC-CCCBCBCEEEEEEECC---HHHH
T ss_pred chHhc-----ChHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCce--EEec-CCCCccccEEEEecCC---HHHH
Confidence 99994 4445566666667889999999998776555544333222 2211 1111222233332222 2233
Q ss_pred HHHHHHhhhcCCcEEEEecchhHHHHHHHHHHhC--CCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCC
Q 013176 262 LIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMD--GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVK 339 (448)
Q Consensus 262 l~~~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~ 339 (448)
...++.+...+++++|||+++++++.+++.|++. +..+..+||+|+..+|.++++.|++|+.+|||||+++++|+|+|
T Consensus 802 ~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip 881 (1151)
T 2eyq_A 802 REAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIP 881 (1151)
T ss_dssp HHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCT
T ss_pred HHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeeccc
Confidence 3344555567889999999999999999999887 78899999999999999999999999999999999999999999
Q ss_pred CccEEEEcCC-CCChhhhhhcccccCCCCCCceEEEEecCC
Q 013176 340 DIKCVVNYDF-PTSLEDYVHRIGRTGRAGARGTAFTFFTHS 379 (448)
Q Consensus 340 ~~~~Vi~~~~-p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 379 (448)
++++||+++. ++++.+|.|++||+||.|+.|.|++++.+.
T Consensus 882 ~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 882 TANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp TEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred CCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 9999999998 569999999999999999999999988754
No 35
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=1.5e-43 Score=374.84 Aligned_cols=324 Identities=21% Similarity=0.314 Sum_probs=251.4
Q ss_pred HHH-HHCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHH
Q 013176 40 EVI-AKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQE 118 (448)
Q Consensus 40 ~~~-~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~ 118 (448)
+.+ +.+||. | ++|.++++.+++++++++++|||||||+ |.++++..+... +++++|++||++|+.|+.+
T Consensus 48 ~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~~-------~~~~lil~PtreLa~Q~~~ 117 (1054)
T 1gku_B 48 EFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLALK-------GKRCYVIFPTSLLVIQAAE 117 (1054)
T ss_dssp HHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHTT-------SCCEEEEESCHHHHHHHHH
T ss_pred HHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhhc-------CCeEEEEeccHHHHHHHHH
Confidence 444 348998 9 9999999999999999999999999998 888888876552 6789999999999999999
Q ss_pred HHHHhhcCCCc----eEEEEEcCCCchHh---HHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCCC
Q 013176 119 EALKFGSRAGI----RSTCIYGGAPKGPQ---IRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGF 191 (448)
Q Consensus 119 ~~~~~~~~~~~----~~~~~~~~~~~~~~---~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~ 191 (448)
.+++++...++ ++..++|+.+.... ...+.. ++|+|+||++|.+++.+ +.++++||+||||++++ +
T Consensus 118 ~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~--~ 190 (1054)
T 1gku_B 118 TIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILK--A 190 (1054)
T ss_dssp HHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHT--S
T ss_pred HHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhh--c
Confidence 99999888788 89999999877663 334445 99999999999887654 56899999999999988 4
Q ss_pred HHHHHHHHHHc-----------CCCcceEEEeccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceEEEEecchhHHH
Q 013176 192 EPQIRKIVTQI-----------RPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYN 260 (448)
Q Consensus 192 ~~~~~~~~~~~-----------~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (448)
...+..++..+ +...+.+++|||+++. ..+...++.++..+.+.... .....+.+.+. ..++..
T Consensus 191 ~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~-~~~~~i~~~~~---~~~k~~ 265 (1054)
T 1gku_B 191 SKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSR-ITVRNVEDVAV---NDESIS 265 (1054)
T ss_dssp THHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCE-ECCCCEEEEEE---SCCCTT
T ss_pred cccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcc-cCcCCceEEEe---chhHHH
Confidence 56777776665 3467899999999876 43332332222222111111 11122233222 344555
Q ss_pred HHHHHHHhhhcCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEE----eccccCCC
Q 013176 261 RLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTA----TDVAARGL 336 (448)
Q Consensus 261 ~l~~~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~----T~~~~~Gi 336 (448)
.+.++++.. +.++||||++++.|+.+++.|++. +++..+|+++. .+++.|++|+.+|||| |+++++|+
T Consensus 266 ~L~~ll~~~--~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~~-----~~l~~F~~G~~~VLVaTas~Tdv~~rGI 337 (1054)
T 1gku_B 266 TLSSILEKL--GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATKK-----GDYEKFVEGEIDHLIGTAHYYGTLVRGL 337 (1054)
T ss_dssp TTHHHHTTS--CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSSS-----HHHHHHHHTSCSEEEEECC------CCS
T ss_pred HHHHHHhhc--CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccHH-----HHHHHHHcCCCcEEEEecCCCCeeEecc
Confidence 666666553 578999999999999999999988 99999999983 6889999999999999 89999999
Q ss_pred CCCCc-cEEEEcCCC-----------------------------------------------------------------
Q 013176 337 DVKDI-KCVVNYDFP----------------------------------------------------------------- 350 (448)
Q Consensus 337 di~~~-~~Vi~~~~p----------------------------------------------------------------- 350 (448)
|+|++ ++||++|+|
T Consensus 338 Dip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 417 (1054)
T 1gku_B 338 DLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVR 417 (1054)
T ss_dssp CCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEE
T ss_pred ccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEe
Confidence 99995 999999999
Q ss_pred ------CChhhhhhcccccCCCCCCc--eEEEEecCCChHHHHHHHHHHHH
Q 013176 351 ------TSLEDYVHRIGRTGRAGARG--TAFTFFTHSNAKFARDLIKILQE 393 (448)
Q Consensus 351 ------~s~~~~~Q~~GR~~R~g~~g--~~~~~~~~~~~~~~~~l~~~~~~ 393 (448)
.+..+|+||+||+||.|..| .+++++...+....+.+.+.+..
T Consensus 418 ~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 418 EGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp TTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHHT
T ss_pred ecceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHhh
Confidence 78999999999999987765 47888888888888887777663
No 36
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=4.3e-42 Score=360.40 Aligned_cols=309 Identities=17% Similarity=0.201 Sum_probs=241.9
Q ss_pred HCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013176 44 KLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (448)
Q Consensus 44 ~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~ 123 (448)
.++| .|+++|.++++.+.+++++++.+|||+|||++|++++...+.. +.+++|++|+++|+.|+.+.++++
T Consensus 35 ~~~f-~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~--------g~~vlvl~PtraLa~Q~~~~l~~~ 105 (997)
T 4a4z_A 35 SWPF-ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRN--------MTKTIYTSPIKALSNQKFRDFKET 105 (997)
T ss_dssp CCSS-CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHT--------TCEEEEEESCGGGHHHHHHHHHTT
T ss_pred hCCC-CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhc--------CCeEEEEeCCHHHHHHHHHHHHHH
Confidence 4678 7999999999999999999999999999999999988876544 678999999999999999999986
Q ss_pred hcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCCCHHHHHHHHHHcC
Q 013176 124 GSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIR 203 (448)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~ 203 (448)
.. ++++..++|+.... ..++|+|+||+.|.+.+......+.++++|||||+|++.++++...+..++..++
T Consensus 106 ~~--~~~v~~l~G~~~~~-------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~ 176 (997)
T 4a4z_A 106 FD--DVNIGLITGDVQIN-------PDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLP 176 (997)
T ss_dssp C----CCEEEECSSCEEC-------TTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSC
T ss_pred cC--CCeEEEEeCCCccC-------CCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcc
Confidence 43 56788888876532 3478999999999998887777788999999999999999998888999999999
Q ss_pred CCcceEEEeccCchHHHHHHHHHc---CCCeEEEeCCcccccccCcceE-------------------------------
Q 013176 204 PDRQTLYWSATWPREVETLARQFL---RNPYKVIIGSLELKANQSINQV------------------------------- 249 (448)
Q Consensus 204 ~~~~~v~~SAT~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~------------------------------- 249 (448)
+..+++++|||+++.. .+...+. ..+..+...... +..+...
T Consensus 177 ~~v~iIlLSAT~~n~~-ef~~~l~~~~~~~~~vi~~~~r---~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 252 (997)
T 4a4z_A 177 QHVKFILLSATVPNTY-EFANWIGRTKQKNIYVISTPKR---PVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNG 252 (997)
T ss_dssp TTCEEEEEECCCTTHH-HHHHHHHHHHTCCEEEEECSSC---SSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC-
T ss_pred cCCCEEEEcCCCCChH-HHHHHHhcccCCceEEEecCCC---CccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhc
Confidence 9999999999987543 3333322 122221111100 0000000
Q ss_pred --------------------------------------------------------------EEEecchhHHHHHHHHHH
Q 013176 250 --------------------------------------------------------------VEVVTEAEKYNRLIKLLK 267 (448)
Q Consensus 250 --------------------------------------------------------------~~~~~~~~~~~~l~~~l~ 267 (448)
........+...+...+.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~ 332 (997)
T 4a4z_A 253 ESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLR 332 (997)
T ss_dssp ----------------------------------------------------------------CCCCTTHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHH
Confidence 000012234455666665
Q ss_pred hhhcCCcEEEEecchhHHHHHHHHHHhCCC---------------------------------------CeEEEcCCCCH
Q 013176 268 EVMDGSRILIFTETKKGCDQVTRQLRMDGW---------------------------------------PALSIHGDKNQ 308 (448)
Q Consensus 268 ~~~~~~k~lVf~~~~~~~~~l~~~L~~~~~---------------------------------------~~~~~~~~~~~ 308 (448)
.. ...++||||++++.|+.++..|.+.++ .+..+|+++++
T Consensus 333 ~~-~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~ 411 (997)
T 4a4z_A 333 KR-ELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLP 411 (997)
T ss_dssp HT-TCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCH
T ss_pred hC-CCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCH
Confidence 43 346899999999999999999976554 47899999999
Q ss_pred HHHHHHHHHHhcCCCCEEEEeccccCCCCCCCccEEEEcCCCC---------ChhhhhhcccccCCCCC--CceEEEEe
Q 013176 309 SERDWVLAEFRSGRSPIMTATDVAARGLDVKDIKCVVNYDFPT---------SLEDYVHRIGRTGRAGA--RGTAFTFF 376 (448)
Q Consensus 309 ~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~Vi~~~~p~---------s~~~~~Q~~GR~~R~g~--~g~~~~~~ 376 (448)
.+|..+++.|++|..+|||||+++++|+|+|+ ..||+.+.+. ++.+|+|++||+||.|. .|.+++++
T Consensus 412 ~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~ 489 (997)
T 4a4z_A 412 IVKELIEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMA 489 (997)
T ss_dssp HHHHHHHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEEC
T ss_pred HHHHHHHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEec
Confidence 99999999999999999999999999999999 6666666555 99999999999999984 56677766
No 37
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=1.1e-41 Score=338.46 Aligned_cols=311 Identities=17% Similarity=0.165 Sum_probs=232.7
Q ss_pred CCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCC
Q 013176 49 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAG 128 (448)
Q Consensus 49 ~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~ 128 (448)
.|+|+|.++++.++.++++++++|||+|||++++.++...+... +.+++|++|+++|+.|+.+.++++....+
T Consensus 113 ~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~-------~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~ 185 (510)
T 2oca_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY-------EGKILIIVPTTALTTQMADDFVDYRLFSH 185 (510)
T ss_dssp CCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHC-------SSEEEEEESSHHHHHHHHHHHHHTTSSCG
T ss_pred CCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCC-------CCeEEEEECcHHHHHHHHHHHHHhhcCCc
Confidence 89999999999999999999999999999999998888776542 44899999999999999999999876666
Q ss_pred ceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCCCHHHHHHHHHHcCCCcce
Q 013176 129 IRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQT 208 (448)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~ 208 (448)
..+..++++.+.... ....++|+|+||+.+.. .....+.++++|||||+|++.. ..+..++..+.+..++
T Consensus 186 ~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~---~~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~~~~~ 255 (510)
T 2oca_A 186 AMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVK---QPKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMFK 255 (510)
T ss_dssp GGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTT---SCGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTTCCEE
T ss_pred cceEEEecCCccccc---cccCCcEEEEeHHHHhh---chhhhhhcCCEEEEECCcCCCc----ccHHHHHHhcccCcEE
Confidence 788888887765544 45678999999997644 2334567899999999999854 5567777777778899
Q ss_pred EEEeccCchHHHHHHH-HHcCCCeEEEeCCccc-----ccccCcceEEEEe---------------------cchhHHHH
Q 013176 209 LYWSATWPREVETLAR-QFLRNPYKVIIGSLEL-----KANQSINQVVEVV---------------------TEAEKYNR 261 (448)
Q Consensus 209 v~~SAT~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~---------------------~~~~~~~~ 261 (448)
+++|||+++....... ..+..+.......... ..+..+....... ....+...
T Consensus 256 l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (510)
T 2oca_A 256 FGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKW 335 (510)
T ss_dssp EEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHH
T ss_pred EEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHHH
Confidence 9999999665322111 1111222111111000 0000000000000 01123333
Q ss_pred HHHHHHhhhc--CCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEe-ccccCCCCC
Q 013176 262 LIKLLKEVMD--GSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTAT-DVAARGLDV 338 (448)
Q Consensus 262 l~~~l~~~~~--~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T-~~~~~Gidi 338 (448)
+.+++..... +.+++|||+ .+++..+++.|.+.+.++..+||+++..+|.++++.|++|+.+||||| +++++|+|+
T Consensus 336 l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDi 414 (510)
T 2oca_A 336 IAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISV 414 (510)
T ss_dssp HHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCC
T ss_pred HHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhccccc
Confidence 4455544332 335556665 899999999999988899999999999999999999999999999999 999999999
Q ss_pred CCccEEEEcCCCCChhhhhhcccccCCCCCCceEEEEec
Q 013176 339 KDIKCVVNYDFPTSLEDYVHRIGRTGRAGARGTAFTFFT 377 (448)
Q Consensus 339 ~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~ 377 (448)
|++++||++++|+++.+|.|++||+||.|+.+.++++++
T Consensus 415 p~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 415 KNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp CSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred ccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 999999999999999999999999999998774544444
No 38
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=3.6e-40 Score=360.15 Aligned_cols=342 Identities=16% Similarity=0.187 Sum_probs=257.0
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHhHHHHhhcC-CcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHH
Q 013176 34 FPDYCLEVIAKLGFVEPTPIQAQGWPMALKG-RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTREL 112 (448)
Q Consensus 34 l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~~~-~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L 112 (448)
+.+...+.+...+|..++|+|.++++.++.+ +++++++|||||||++|.++++..+.+. .+.+++|++|+++|
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~------~~~kavyi~P~raL 984 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQS------SEGRCVYITPMEAL 984 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHC------TTCCEEEECSCHHH
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhC------CCCEEEEEcChHHH
Confidence 4455667777778999999999999999765 6899999999999999999999998764 25679999999999
Q ss_pred HHHHHHHHHH-hhcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccc--cCCCCccEEEEecccccccC
Q 013176 113 AVQIQEEALK-FGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQH--TNLRRVTYLVLDEADRMLDM 189 (448)
Q Consensus 113 ~~q~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~--~~~~~~~~iIvDE~h~~~~~ 189 (448)
+.|..+.+++ +....++++..++|+...+.. ....++|+||||+++..++.+.. ..+.++++||+||+|.+.+.
T Consensus 985 a~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~---~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~ 1061 (1724)
T 4f92_B 985 AEQVYMDWYEKFQDRLNKKVVLLTGETSTDLK---LLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGE 1061 (1724)
T ss_dssp HHHHHHHHHHHHTTTSCCCEEECCSCHHHHHH---HHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGST
T ss_pred HHHHHHHHHHHhchhcCCEEEEEECCCCcchh---hcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCC
Confidence 9999999875 666678999988887643222 33457999999999977665432 24678999999999988764
Q ss_pred CCHHHHHHHHH-------HcCCCcceEEEeccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceEEEEecchhH----
Q 013176 190 GFEPQIRKIVT-------QIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEK---- 258 (448)
Q Consensus 190 ~~~~~~~~~~~-------~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 258 (448)
.+..+..++. ..+++.|++++|||+++ ...++..+............. ..+..+...+........
T Consensus 1062 -rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N-~~dla~WL~~~~~~~~~~~~~-~RPvpL~~~i~~~~~~~~~~~~ 1138 (1724)
T 4f92_B 1062 -NGPVLEVICSRMRYISSQIERPIRIVALSSSLSN-AKDVAHWLGCSATSTFNFHPN-VRPVPLELHIQGFNISHTQTRL 1138 (1724)
T ss_dssp -THHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTT-HHHHHHHHTCCSTTEEECCGG-GCSSCEEEEEEEECCCSHHHHH
T ss_pred -CCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCC-HHHHHHHhCCCCCCeEEeCCC-CCCCCeEEEEEeccCCCchhhh
Confidence 4655554443 34567899999999975 445555544333222222221 223333333333322211
Q ss_pred ---HHHHHHHHHhhhcCCcEEEEecchhHHHHHHHHHHhC----------------------------------CCCeEE
Q 013176 259 ---YNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMD----------------------------------GWPALS 301 (448)
Q Consensus 259 ---~~~l~~~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~----------------------------------~~~~~~ 301 (448)
...+...+.....++++||||+++..|+.++..|... ...+..
T Consensus 1139 ~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~ 1218 (1724)
T 4f92_B 1139 LSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGY 1218 (1724)
T ss_dssp HTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEE
T ss_pred hhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEE
Confidence 2233445556667889999999999999888766321 124789
Q ss_pred EcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCCCccEEEE----cC------CCCChhhhhhcccccCCCCC--C
Q 013176 302 IHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVKDIKCVVN----YD------FPTSLEDYVHRIGRTGRAGA--R 369 (448)
Q Consensus 302 ~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~Vi~----~~------~p~s~~~~~Q~~GR~~R~g~--~ 369 (448)
+|++++.++|..+++.|++|.++|||||+++++|||+|...+||. |+ .|.++.+|.|++|||||.|. .
T Consensus 1219 hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~ 1298 (1724)
T 4f92_B 1219 LHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDE 1298 (1724)
T ss_dssp ECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSC
T ss_pred ECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCc
Confidence 999999999999999999999999999999999999998888873 22 35688999999999999987 5
Q ss_pred ceEEEEecCCChHHHHHH
Q 013176 370 GTAFTFFTHSNAKFARDL 387 (448)
Q Consensus 370 g~~~~~~~~~~~~~~~~l 387 (448)
|.+++++.+.+...++.+
T Consensus 1299 G~avll~~~~~~~~~~~l 1316 (1724)
T 4f92_B 1299 GRCVIMCQGSKKDFFKKF 1316 (1724)
T ss_dssp EEEEEEEEGGGHHHHHHH
T ss_pred eEEEEEecchHHHHHHHH
Confidence 888999888777666554
No 39
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=3e-40 Score=295.34 Aligned_cols=237 Identities=67% Similarity=1.100 Sum_probs=218.2
Q ss_pred CCHHHHHHHHhcCCeEEecCCCCCcccccccCCCCHHHHHHHHHCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHH
Q 013176 1 MTETEVKMYRARREITVEGHDVPRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLS 80 (448)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~ 80 (448)
++.++++.|.....+.+.|...|.|..+|+++++++.+.+.+..+||..|+++|.++++.+++++++++.+|||+|||++
T Consensus 3 ~~~~~~~~~~~~~~i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~ 82 (242)
T 3fe2_A 3 RTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLS 82 (242)
T ss_dssp ---CHHHHHHHHHTEEEESSCCCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHH
T ss_pred CCHHHHHHHHhcCceEEeCCCCCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHH
Q 013176 81 YLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGR 160 (448)
Q Consensus 81 ~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~ 160 (448)
|++|++..+..........+++++|++||++|+.|+.+.++++....++++..++|+.........+..+++|+|+||++
T Consensus 83 ~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~ 162 (242)
T 3fe2_A 83 YLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 162 (242)
T ss_dssp HHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHH
T ss_pred HHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHH
Confidence 99999999876554444457889999999999999999999998888899999999998888888888889999999999
Q ss_pred HHHHHHccccCCCCccEEEEecccccccCCCHHHHHHHHHHcCCCcceEEEeccCchHHHHHHHHHcCCCeEEEeCC
Q 013176 161 LIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGS 237 (448)
Q Consensus 161 l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 237 (448)
|.+.+......+.+++++|+||||++.+++|...+..++..+++..|++++|||+++.+..++..++.+|..+.+..
T Consensus 163 l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~ 239 (242)
T 3fe2_A 163 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGA 239 (242)
T ss_dssp HHHHHHHTSCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC
T ss_pred HHHHHHcCCCCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEecC
Confidence 99999888888899999999999999999999999999999999999999999999999999999999998887654
No 40
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=8.2e-40 Score=325.34 Aligned_cols=324 Identities=22% Similarity=0.235 Sum_probs=231.3
Q ss_pred HCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013176 44 KLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (448)
Q Consensus 44 ~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~ 123 (448)
.+|+ .|+++|..+++.+++|+ +..++||+|||++|++|++..... ++.++|++||++||.|..+++..+
T Consensus 70 ~lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~--------g~~vlVltPTreLA~Q~~e~~~~l 138 (853)
T 2fsf_A 70 VFGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALT--------GKGVHVVTVNDYLAQRDAENNRPL 138 (853)
T ss_dssp HHSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTT--------SSCCEEEESSHHHHHHHHHHHHHH
T ss_pred HcCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHc--------CCcEEEEcCCHHHHHHHHHHHHHH
Confidence 3677 89999999999999987 889999999999999999865433 457999999999999999999999
Q ss_pred hcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHH-HHHHHccc------cCCCCccEEEEecccccc-cCC-----
Q 013176 124 GSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRL-IDMLEAQH------TNLRRVTYLVLDEADRML-DMG----- 190 (448)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~~~~~~------~~~~~~~~iIvDE~h~~~-~~~----- 190 (448)
...+++++.+++|+.+.. .+....+++|+|+||+.| ++++.... ..++++.++|+||||.++ +.+
T Consensus 139 ~~~lgl~v~~i~GG~~~~--~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLI 216 (853)
T 2fsf_A 139 FEFLGLTVGINLPGMPAP--AKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLI 216 (853)
T ss_dssp HHHTTCCEEECCTTCCHH--HHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEE
T ss_pred HHhcCCeEEEEeCCCCHH--HHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCccccc
Confidence 999999999999997653 334445689999999999 68776442 456889999999999988 432
Q ss_pred ----------CHHHHHHHHHHcCC--------------------CcceE------------------------EEeccCc
Q 013176 191 ----------FEPQIRKIVTQIRP--------------------DRQTL------------------------YWSATWP 216 (448)
Q Consensus 191 ----------~~~~~~~~~~~~~~--------------------~~~~v------------------------~~SAT~~ 216 (448)
+...+..++..+++ .++++ ++|||.+
T Consensus 217 iSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~ 296 (853)
T 2fsf_A 217 ISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANI 296 (853)
T ss_dssp EEEC----------------------------------------------------------------------------
T ss_pred ccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccc
Confidence 33455556555543 33432 6788854
Q ss_pred h---HHHHHH--HHHcCC---------------------------------C----eEEEeCCcc---------------
Q 013176 217 R---EVETLA--RQFLRN---------------------------------P----YKVIIGSLE--------------- 239 (448)
Q Consensus 217 ~---~~~~~~--~~~~~~---------------------------------~----~~~~~~~~~--------------- 239 (448)
. .+...+ ..++.. + ..+.+....
T Consensus 297 ~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y 376 (853)
T 2fsf_A 297 MLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLY 376 (853)
T ss_dssp ------------------------------------------------------------CCCCCEEEEEEEHHHHHTTS
T ss_pred hHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhh
Confidence 3 111100 000000 0 000000000
Q ss_pred -----------------------------cccccCc--ceEEEEecchhHHHHHHHHHHhhh-cCCcEEEEecchhHHHH
Q 013176 240 -----------------------------LKANQSI--NQVVEVVTEAEKYNRLIKLLKEVM-DGSRILIFTETKKGCDQ 287 (448)
Q Consensus 240 -----------------------------~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~-~~~k~lVf~~~~~~~~~ 287 (448)
...+... ...........|+..+.+.+.+.. .+.++||||+|++.++.
T Consensus 377 ~kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~ 456 (853)
T 2fsf_A 377 EKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSEL 456 (853)
T ss_dssp SEEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHH
T ss_pred hhhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHH
Confidence 0000000 111334567788999988887653 57789999999999999
Q ss_pred HHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCCCc--------------------------
Q 013176 288 VTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVKDI-------------------------- 341 (448)
Q Consensus 288 l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~-------------------------- 341 (448)
+++.|++.++++.++|++....++..+.+.|+.| .|+|||+++++|+|++..
T Consensus 457 Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~ 534 (853)
T 2fsf_A 457 VSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQ 534 (853)
T ss_dssp HHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHH
T ss_pred HHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhh
Confidence 9999999999999999999888888888888877 699999999999999863
Q ss_pred -----------cEEEEcCCCCChhhhhhcccccCCCCCCceEEEEecCCChH
Q 013176 342 -----------KCVVNYDFPTSLEDYVHRIGRTGRAGARGTAFTFFTHSNAK 382 (448)
Q Consensus 342 -----------~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~ 382 (448)
.+||+++.|.|...|.|++||+||.|.+|.+++|++..+..
T Consensus 535 ~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD~l 586 (853)
T 2fsf_A 535 VRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDAL 586 (853)
T ss_dssp HHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSGG
T ss_pred hhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccHHH
Confidence 59999999999999999999999999999999999877654
No 41
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.8e-40 Score=362.47 Aligned_cols=347 Identities=20% Similarity=0.268 Sum_probs=251.4
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHhHHHHhhc-CCcEEEEcCCCChHHHHHHHHHHHHhhcCCC---ccCCCCceEEEEcC
Q 013176 33 NFPDYCLEVIAKLGFVEPTPIQAQGWPMALK-GRDLIGIAETGSGKTLSYLLPAFVHVSAQPR---LVQGEGPIVLVLAP 108 (448)
Q Consensus 33 ~l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~~-~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~---~~~~~~~~vlil~P 108 (448)
.||++....+ .||..++++|.++++.++. ++|++++||||||||++|.++++..+.+... .....+.+++|++|
T Consensus 65 ~Lp~~~~~~f--~g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP 142 (1724)
T 4f92_B 65 KLPKYAQAGF--EGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAP 142 (1724)
T ss_dssp TSCGGGSTTC--TTCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECS
T ss_pred hcCHHHHHhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECC
Confidence 3555544433 2688999999999998875 6799999999999999999999998865322 12234778999999
Q ss_pred cHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccc--cCCCCccEEEEeccccc
Q 013176 109 TRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQH--TNLRRVTYLVLDEADRM 186 (448)
Q Consensus 109 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~--~~~~~~~~iIvDE~h~~ 186 (448)
+++|+.|..+.+++.....+++|..++|+...... ....++|+|||||++..++.+.. ..+.++++|||||+|.+
T Consensus 143 ~kALa~e~~~~l~~~~~~~gi~V~~~tGd~~~~~~---~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l 219 (1724)
T 4f92_B 143 MRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKE---EISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLL 219 (1724)
T ss_dssp SHHHHHHHHHHHHHHHTTTTCCEEECCSSCSSCCT---TGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGG
T ss_pred HHHHHHHHHHHHHHHHhhCCCEEEEEECCCCCCcc---ccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhc
Confidence 99999999999998888889999999998765332 23468999999999855554332 23678999999999977
Q ss_pred ccCCCHHHHHHHHH-------HcCCCcceEEEeccCchHHHHHHHHHcCCCe-EEEeCCcccccccCcceEEEEecch--
Q 013176 187 LDMGFEPQIRKIVT-------QIRPDRQTLYWSATWPREVETLARQFLRNPY-KVIIGSLELKANQSINQVVEVVTEA-- 256 (448)
Q Consensus 187 ~~~~~~~~~~~~~~-------~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-- 256 (448)
.+ ..+..+..++. ..+++.|+|++|||+++ .+.++..+...+. ........ ..+..+.+.+......
T Consensus 220 ~d-~RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl~N-~~dvA~wL~~~~~~~~~~~~~~-~RPvpL~~~~~~~~~~~~ 296 (1724)
T 4f92_B 220 HD-DRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPN-YEDVATFLRVDPAKGLFYFDNS-FRPVPLEQTYVGITEKKA 296 (1724)
T ss_dssp GS-TTHHHHHHHHHHHHHHHHHHTCCCEEEEEECSCTT-HHHHHHHTTCCHHHHEEECCGG-GCSSCEEEECCEECCCCH
T ss_pred CC-ccHHHHHHHHHHHHHHHHhCCCCCcEEEEecccCC-HHHHHHHhCCCCCCCeEEECCC-CccCccEEEEeccCCcch
Confidence 65 46666555443 34678899999999975 4445543322211 11111111 1222233322222211
Q ss_pred -hHHHH----HHHHHHhhhcCCcEEEEecchhHHHHHHHHHHhC------------------------------------
Q 013176 257 -EKYNR----LIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMD------------------------------------ 295 (448)
Q Consensus 257 -~~~~~----l~~~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~------------------------------------ 295 (448)
..... +.+.+.+...++++||||++++.|+.+++.|.+.
T Consensus 297 ~~~~~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 376 (1724)
T 4f92_B 297 IKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDL 376 (1724)
T ss_dssp HHHHHHHHHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHH
Confidence 11222 2233334445678999999999999888877531
Q ss_pred -CCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCCCccEEEE----cCC------CCChhhhhhcccccC
Q 013176 296 -GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVKDIKCVVN----YDF------PTSLEDYVHRIGRTG 364 (448)
Q Consensus 296 -~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~Vi~----~~~------p~s~~~~~Q~~GR~~ 364 (448)
...++++|++|+.++|..+++.|++|.++|||||++++.|||+|..++||. |++ |.++.+|.||+||||
T Consensus 377 l~~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAG 456 (1724)
T 4f92_B 377 LPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAG 456 (1724)
T ss_dssp TTTTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBS
T ss_pred hhcCEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhcc
Confidence 123789999999999999999999999999999999999999999988884 443 458999999999999
Q ss_pred CCCC--CceEEEEecCCChHHHHHH
Q 013176 365 RAGA--RGTAFTFFTHSNAKFARDL 387 (448)
Q Consensus 365 R~g~--~g~~~~~~~~~~~~~~~~l 387 (448)
|.|. .|.++++....+......+
T Consensus 457 R~g~d~~G~~ii~~~~~~~~~~~~l 481 (1724)
T 4f92_B 457 RPQYDTKGEGILITSHGELQYYLSL 481 (1724)
T ss_dssp CTTTCSCEEEEEEEESTTCCHHHHH
T ss_pred CCCCCCccEEEEEecchhHHHHHHH
Confidence 9875 5888888887766555443
No 42
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=5.5e-39 Score=319.75 Aligned_cols=336 Identities=20% Similarity=0.256 Sum_probs=258.0
Q ss_pred HCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013176 44 KLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (448)
Q Consensus 44 ~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~ 123 (448)
.+|+ .|+++|..+++.+++|+ +..++||+|||++|.+|++..... +..++|++||++||.|..+++..+
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~--------g~~v~VvTpTreLA~Qdae~m~~l 175 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA--------GNGVHIVTVNDYLAKRDSEWMGRV 175 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT--------TSCEEEEESSHHHHHHHHHHHHHH
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh--------CCCeEEEeCCHHHHHHHHHHHHHH
Confidence 4799 99999999999999986 899999999999999999755433 446999999999999999999999
Q ss_pred hcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHH-HHHHHcc------ccCCCCccEEEEecccccc-cC------
Q 013176 124 GSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRL-IDMLEAQ------HTNLRRVTYLVLDEADRML-DM------ 189 (448)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~~~~~------~~~~~~~~~iIvDE~h~~~-~~------ 189 (448)
...+++++.+++|+.+... +....+++|+|+||+.| ++++... ...++.+.++|+||||.++ +.
T Consensus 176 ~~~lGLsv~~i~gg~~~~~--r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLi 253 (922)
T 1nkt_A 176 HRFLGLQVGVILATMTPDE--RRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLI 253 (922)
T ss_dssp HHHTTCCEEECCTTCCHHH--HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEE
T ss_pred HhhcCCeEEEEeCCCCHHH--HHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCcccee
Confidence 9999999999999876433 33334689999999999 7777644 3557789999999999988 32
Q ss_pred ---------CCHHHHHHHHHHcC---------CCcceE-----------------EEeccCch---HHHHHH--HHHcCC
Q 013176 190 ---------GFEPQIRKIVTQIR---------PDRQTL-----------------YWSATWPR---EVETLA--RQFLRN 229 (448)
Q Consensus 190 ---------~~~~~~~~~~~~~~---------~~~~~v-----------------~~SAT~~~---~~~~~~--~~~~~~ 229 (448)
++...+..+...++ +.++++ ++|||.+. .+...+ ..++..
T Consensus 254 iSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~ 333 (922)
T 1nkt_A 254 ISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSR 333 (922)
T ss_dssp EEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCB
T ss_pred ecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhc
Confidence 35577888888886 567777 78999764 222221 112211
Q ss_pred CeEEE--------eCCc---------------------------------------------------------------
Q 013176 230 PYKVI--------IGSL--------------------------------------------------------------- 238 (448)
Q Consensus 230 ~~~~~--------~~~~--------------------------------------------------------------- 238 (448)
...+. +...
T Consensus 334 d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~ 413 (922)
T 1nkt_A 334 DKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELH 413 (922)
T ss_dssp TTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHH
T ss_pred ccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHH
Confidence 10000 0000
Q ss_pred ----------ccccccCc--ceEEEEecchhHHHHHHHHHHhh-hcCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCC
Q 013176 239 ----------ELKANQSI--NQVVEVVTEAEKYNRLIKLLKEV-MDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGD 305 (448)
Q Consensus 239 ----------~~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~~-~~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~ 305 (448)
+...+... ...........|+..+.+.+.+. ..+.++||||+|++.++.+++.|++.++++.++|++
T Consensus 414 ~iY~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak 493 (922)
T 1nkt_A 414 EIYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAK 493 (922)
T ss_dssp HHHCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSS
T ss_pred HHhCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCC
Confidence 00000000 01133445677888888888664 356789999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCCCc--------------------------------------------
Q 013176 306 KNQSERDWVLAEFRSGRSPIMTATDVAARGLDVKDI-------------------------------------------- 341 (448)
Q Consensus 306 ~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~-------------------------------------------- 341 (448)
....++..+.+.|+.| .|+|||+++++|+||+..
T Consensus 494 ~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (922)
T 1nkt_A 494 YHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEA 571 (922)
T ss_dssp CHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred hhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhh
Confidence 8877777777788776 699999999999999964
Q ss_pred --------cEEEEcCCCCChhhhhhcccccCCCCCCceEEEEecCCChHHH----HHHHHHHHHh
Q 013176 342 --------KCVVNYDFPTSLEDYVHRIGRTGRAGARGTAFTFFTHSNAKFA----RDLIKILQEA 394 (448)
Q Consensus 342 --------~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~----~~l~~~~~~~ 394 (448)
.+||+++.|.|...|.|++||+||.|.+|.+++|++..+.-+. +.+...+...
T Consensus 572 ~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~l~r~f~~~~~~~~~~~~ 636 (922)
T 1nkt_A 572 KEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDELMRRFNGAALETLLTRL 636 (922)
T ss_dssp HHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSHHHHHTTHHHHHHHHHHT
T ss_pred hHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHHHHHHhhhHHHHHHHHHh
Confidence 4999999999999999999999999999999999998876543 3344444443
No 43
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=1.1e-40 Score=328.06 Aligned_cols=293 Identities=22% Similarity=0.242 Sum_probs=218.4
Q ss_pred CCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCC
Q 013176 49 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAG 128 (448)
Q Consensus 49 ~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~ 128 (448)
.|+|+|.++++.+..++++++++|||+|||++|+.++... +.++||++|+++|+.||.+++.++ +
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~-----------~~~~Lvl~P~~~L~~Q~~~~~~~~----~ 157 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-----------STPTLIVVPTLALAEQWKERLGIF----G 157 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH-----------CSCEEEEESSHHHHHHHHHHGGGG----C
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc-----------CCCEEEEECCHHHHHHHHHHHHhC----C
Confidence 7999999999999999999999999999999998887765 456999999999999999999884 5
Q ss_pred ce-EEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCCCHHHHHHHHHHcCCCcc
Q 013176 129 IR-STCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQ 207 (448)
Q Consensus 129 ~~-~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~ 207 (448)
++ +..++|+... ..+|+|+||+.+...+... ..++++|||||+|++.+..+.. +...+ +..+
T Consensus 158 ~~~v~~~~g~~~~---------~~~Ivv~T~~~l~~~~~~~---~~~~~liIvDEaH~~~~~~~~~----~~~~~-~~~~ 220 (472)
T 2fwr_A 158 EEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPAESYVQ----IAQMS-IAPF 220 (472)
T ss_dssp GGGEEEBSSSCBC---------CCSEEEEEHHHHHHTHHHH---TTTCSEEEEETGGGTTSTTTHH----HHHTC-CCSE
T ss_pred CcceEEECCCcCC---------cCCEEEEEcHHHHHHHHHh---cCCCCEEEEECCcCCCChHHHH----HHHhc-CCCe
Confidence 66 7777766543 4689999999987665421 2458999999999998877654 33334 5678
Q ss_pred eEEEeccCchH-------------------HHHHHHHHcCCCeEE--EeCCcccc-----------------------cc
Q 013176 208 TLYWSATWPRE-------------------VETLARQFLRNPYKV--IIGSLELK-----------------------AN 243 (448)
Q Consensus 208 ~v~~SAT~~~~-------------------~~~~~~~~~~~~~~~--~~~~~~~~-----------------------~~ 243 (448)
++++|||+.+. ...+...++..+... ........ ..
T Consensus 221 ~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 300 (472)
T 2fwr_A 221 RLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRA 300 (472)
T ss_dssp EEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCC
T ss_pred EEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccch
Confidence 89999998631 111111111111110 00000000 00
Q ss_pred cCcceEE---------------------EEecchhHHHHHHHHHHhhhcCCcEEEEecchhHHHHHHHHHHhCCCCeEEE
Q 013176 244 QSINQVV---------------------EVVTEAEKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSI 302 (448)
Q Consensus 244 ~~~~~~~---------------------~~~~~~~~~~~l~~~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~ 302 (448)
..+...+ .......+...+.+++.+ ..+.++||||++++.++.+++.|. +..+
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~ 374 (472)
T 2fwr_A 301 EDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILER-HRKDKIIIFTRHNELVYRISKVFL-----IPAI 374 (472)
T ss_dssp SSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHH-TSSSCBCCBCSCHHHHHHHHHHTT-----CCBC
T ss_pred hhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHh-CCCCcEEEEECCHHHHHHHHHHhC-----ccee
Confidence 0000000 001223456677777776 457799999999999999999884 5578
Q ss_pred cCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCCCccEEEEcCCCCChhhhhhcccccCCCCCC-ceEEE--EecCC
Q 013176 303 HGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVKDIKCVVNYDFPTSLEDYVHRIGRTGRAGAR-GTAFT--FFTHS 379 (448)
Q Consensus 303 ~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~-g~~~~--~~~~~ 379 (448)
|++++..+|.++++.|++|+.+|||+|+++++|+|+|++++||++++|+++.+|.|++||++|.|+. +.+++ ++...
T Consensus 375 ~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~ 454 (472)
T 2fwr_A 375 THRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRG 454 (472)
T ss_dssp CSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECS
T ss_pred eCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999865 45543 44433
No 44
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=2.8e-40 Score=330.50 Aligned_cols=318 Identities=17% Similarity=0.149 Sum_probs=229.4
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHH
Q 013176 32 ANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRE 111 (448)
Q Consensus 32 ~~l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~ 111 (448)
+++++.+.+.+... ...++|+|+.+++.+.+++++++.+|||||||++|+++++..+... +.++||++||++
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~-------~~~vLvl~Ptre 226 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKR-------RLRTLILAPTRV 226 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT-------TCCEEEEESSHH
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhC-------CCeEEEEcChHH
Confidence 33444444444332 4678899888899999999999999999999999999999887652 568999999999
Q ss_pred HHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCCC
Q 013176 112 LAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGF 191 (448)
Q Consensus 112 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~ 191 (448)
|+.|+.+.++.+ .+. ....... .....+..+.++|.+.+...+... ..+.++++||+||||++ +.++
T Consensus 227 La~Qi~~~l~~~------~v~-~~~~~l~----~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~ 293 (618)
T 2whx_A 227 VAAEMEEALRGL------PIR-YQTPAVK----SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCS 293 (618)
T ss_dssp HHHHHHHHTTTS------CEE-ECCTTSS----CCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC-SHHH
T ss_pred HHHHHHHHhcCC------cee-Eecccce----eccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC-CccH
Confidence 999999887632 222 1111100 001112456678888887655543 45788999999999997 5455
Q ss_pred HHHHHHHHHHcC-CCcceEEEeccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceEEEEecchhHHHHHHHHHHhhh
Q 013176 192 EPQIRKIVTQIR-PDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKEVM 270 (448)
Q Consensus 192 ~~~~~~~~~~~~-~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 270 (448)
...+..+...+. +..|+++||||++.....+.. .++..+.+.... + ......+...+.+
T Consensus 294 ~~~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~~--------------~-~~~~~~ll~~l~~-- 353 (618)
T 2whx_A 294 VAARGYISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIEREI--------------P-ERSWNTGFDWITD-- 353 (618)
T ss_dssp HHHHHHHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECCC--------------C-SSCCSSSCHHHHH--
T ss_pred HHHHHHHHHHhcccCccEEEEECCCchhhhhhhc---cCCceeeecccC--------------C-HHHHHHHHHHHHh--
Confidence 666666666654 678999999999775432211 122222111100 0 0111122333333
Q ss_pred cCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCCCccEE------
Q 013176 271 DGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVKDIKCV------ 344 (448)
Q Consensus 271 ~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~V------ 344 (448)
..+++||||++++.++.+++.|++.++++..+|++ +|.++++.|++|+.+|||||+++++|+|+| +++|
T Consensus 354 ~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~ 428 (618)
T 2whx_A 354 YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRC 428 (618)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEE
T ss_pred CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcce
Confidence 36789999999999999999999999999999984 678899999999999999999999999997 8888
Q ss_pred --------------EEcCCCCChhhhhhcccccCCCCC-CceEEEEec---CCChHHHHHHHHHHHHhC
Q 013176 345 --------------VNYDFPTSLEDYVHRIGRTGRAGA-RGTAFTFFT---HSNAKFARDLIKILQEAG 395 (448)
Q Consensus 345 --------------i~~~~p~s~~~~~Q~~GR~~R~g~-~g~~~~~~~---~~~~~~~~~l~~~~~~~~ 395 (448)
|+++.|.+.++|+||+||+||.|. .|.+++|+. +.+...+..+...+....
T Consensus 429 ~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i~l~~ 497 (618)
T 2whx_A 429 LKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKMLLDN 497 (618)
T ss_dssp EEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHHHHTT
T ss_pred ecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHhcccc
Confidence 777779999999999999999965 899999997 677777777766654433
No 45
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=9.1e-40 Score=317.74 Aligned_cols=287 Identities=18% Similarity=0.165 Sum_probs=210.3
Q ss_pred CCCCCcHHHHhHHHHhhcCCcE-EEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhh
Q 013176 46 GFVEPTPIQAQGWPMALKGRDL-IGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (448)
Q Consensus 46 ~~~~~~~~Q~~~i~~~~~~~~~-lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~ 124 (448)
|+.+++|+|+ +++.+++++++ ++++|||||||++|+++++..+... +.+++|++||++|+.|+.+.+..+
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~-------~~~~lvl~Ptr~La~Q~~~~l~g~- 71 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLR-------RLRTLILAPTRVVAAEMEEALRGL- 71 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHT-------TCCEEEEESSHHHHHHHHHHTTTS-
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhc-------CCcEEEECCCHHHHHHHHHHhcCc-
Confidence 6778999984 79999988877 8889999999999999998876553 568999999999999999887532
Q ss_pred cCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCCCHHHHHHHHH-HcC
Q 013176 125 SRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVT-QIR 203 (448)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~-~~~ 203 (448)
.+......... ....+..|.++|++.+.+.+.+. ..+.++++||+||||++ +..+......+.. ...
T Consensus 72 -----~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~ 139 (451)
T 2jlq_A 72 -----PIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEM 139 (451)
T ss_dssp -----CEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHT
T ss_pred -----eeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcC
Confidence 22211111110 11234568899999998777643 55788999999999976 3222222222222 234
Q ss_pred CCcceEEEeccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceEEEEecchhHHHHHHHHHHhhhcCCcEEEEecchh
Q 013176 204 PDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKEVMDGSRILIFTETKK 283 (448)
Q Consensus 204 ~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~k~lVf~~~~~ 283 (448)
++.++++||||++.....+ ...++..+...... +.... ..+...+.+ ..+++||||++++
T Consensus 140 ~~~~~i~~SAT~~~~~~~~---~~~~~~~~~~~~~~--p~~~~-------------~~~~~~l~~--~~~~~lVF~~s~~ 199 (451)
T 2jlq_A 140 GEAAAIFMTATPPGSTDPF---PQSNSPIEDIEREI--PERSW-------------NTGFDWITD--YQGKTVWFVPSIK 199 (451)
T ss_dssp TSCEEEEECSSCTTCCCSS---CCCSSCEEEEECCC--CSSCC-------------SSSCHHHHH--CCSCEEEECSSHH
T ss_pred CCceEEEEccCCCccchhh---hcCCCceEecCccC--Cchhh-------------HHHHHHHHh--CCCCEEEEcCCHH
Confidence 6789999999997643221 12222222221100 00000 011223333 3568999999999
Q ss_pred HHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCCCccEEEEcC---------------
Q 013176 284 GCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVKDIKCVVNYD--------------- 348 (448)
Q Consensus 284 ~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~Vi~~~--------------- 348 (448)
.++.+++.|++.++.+..+|+++. .++++.|++|+.+|||||+++++|+|+|+ ++||++|
T Consensus 200 ~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l 274 (451)
T 2jlq_A 200 AGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERV 274 (451)
T ss_dssp HHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEE
T ss_pred HHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCccccccccccccee
Confidence 999999999999999999999764 46899999999999999999999999999 9999998
Q ss_pred -----CCCChhhhhhcccccCCCCC-CceEEEEecC
Q 013176 349 -----FPTSLEDYVHRIGRTGRAGA-RGTAFTFFTH 378 (448)
Q Consensus 349 -----~p~s~~~~~Q~~GR~~R~g~-~g~~~~~~~~ 378 (448)
.|.+..+|+||+||+||.|. .|.++++...
T Consensus 275 ~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 275 ILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp EEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred eecccccCCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 89999999999999999998 7888777643
No 46
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=4.7e-40 Score=318.26 Aligned_cols=286 Identities=17% Similarity=0.209 Sum_probs=195.0
Q ss_pred HhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCC
Q 013176 60 MALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAP 139 (448)
Q Consensus 60 ~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~ 139 (448)
.+.+++++++++|||||||++|+++++..+... +.+++|++||++|+.|+.+.++.+ ++. ...+...
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~-------~~~~lil~Ptr~La~Q~~~~l~~~----~v~--~~~~~~~ 70 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARR-------RLRTLVLAPTRVVLSEMKEAFHGL----DVK--FHTQAFS 70 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT-------TCCEEEEESSHHHHHHHHHHTTTS----CEE--EESSCCC
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc-------CCeEEEEcchHHHHHHHHHHHhcC----CeE--Eecccce
Confidence 456789999999999999999999999877653 568999999999999999988754 221 1111100
Q ss_pred chHhHHHHhcCCcEEEEccHHHHHHH--------HccccCCCCccEEEEecccccccCCCHHHHHHHHHHc-CCCcceEE
Q 013176 140 KGPQIRDLRRGVEIVIATPGRLIDML--------EAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQI-RPDRQTLY 210 (448)
Q Consensus 140 ~~~~~~~~~~~~~iiv~T~~~l~~~~--------~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~-~~~~~~v~ 210 (448)
.++||+.+.+.+ ......+.+++++|+||+|++ +..+...+..+.... .+..++++
T Consensus 71 --------------~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l~ 135 (440)
T 1yks_A 71 --------------AHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATIL 135 (440)
T ss_dssp --------------CCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEEE
T ss_pred --------------eccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEEE
Confidence 255554432211 112234788999999999997 322222223332222 36789999
Q ss_pred EeccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceEEEEecchhHHHHHHHHHHhhhcCCcEEEEecchhHHHHHHH
Q 013176 211 WSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTR 290 (448)
Q Consensus 211 ~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~k~lVf~~~~~~~~~l~~ 290 (448)
||||+++.+..+... ..+...... ...... ...+...+.+ .++++||||++++.++.+++
T Consensus 136 ~SAT~~~~~~~~~~~--~~~~~~~~~---------------~~~~~~-~~~~~~~l~~--~~~~~lVF~~s~~~a~~l~~ 195 (440)
T 1yks_A 136 MTATPPGTSDEFPHS--NGEIEDVQT---------------DIPSEP-WNTGHDWILA--DKRPTAWFLPSIRAANVMAA 195 (440)
T ss_dssp ECSSCTTCCCSSCCC--SSCEEEEEC---------------CCCSSC-CSSSCHHHHH--CCSCEEEECSCHHHHHHHHH
T ss_pred EeCCCCchhhhhhhc--CCCeeEeee---------------ccChHH-HHHHHHHHHh--cCCCEEEEeCCHHHHHHHHH
Confidence 999997653322110 011111000 000000 1112222322 36799999999999999999
Q ss_pred HHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCCCccEEEE-------------------cCCCC
Q 013176 291 QLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVKDIKCVVN-------------------YDFPT 351 (448)
Q Consensus 291 ~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~Vi~-------------------~~~p~ 351 (448)
.|++.++++..+|| ++|.++++.|++|+.+|||||+++++|+|+| +++||+ ++.|.
T Consensus 196 ~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~ 270 (440)
T 1yks_A 196 SLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRI 270 (440)
T ss_dssp HHHHTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEEC
T ss_pred HHHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeecccccc
Confidence 99999999999999 3678899999999999999999999999999 999986 88899
Q ss_pred ChhhhhhcccccCCC-CCCceEEEEe---cCCChHHHHHHHHHHHHhCCCC
Q 013176 352 SLEDYVHRIGRTGRA-GARGTAFTFF---THSNAKFARDLIKILQEAGQIV 398 (448)
Q Consensus 352 s~~~~~Q~~GR~~R~-g~~g~~~~~~---~~~~~~~~~~l~~~~~~~~~~~ 398 (448)
+..+|+||+||+||. +++|.|++++ ++.+...+..+...+......+
T Consensus 271 ~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~l 321 (440)
T 1yks_A 271 SASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASMLLDNMEV 321 (440)
T ss_dssp CHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHHHHTTSCC
T ss_pred CHHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHHhccccccc
Confidence 999999999999998 6899999996 5667777777766654444433
No 47
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=4.2e-39 Score=323.87 Aligned_cols=304 Identities=16% Similarity=0.213 Sum_probs=212.4
Q ss_pred HHHCCCC-----CCcHHHH-----hHHHHhh------cCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEE
Q 013176 42 IAKLGFV-----EPTPIQA-----QGWPMAL------KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLV 105 (448)
Q Consensus 42 ~~~~~~~-----~~~~~Q~-----~~i~~~~------~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vli 105 (448)
+..+||. .|+++|+ ++++.++ +++++++++|||||||++|+++++..+... +.+++|
T Consensus 203 l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~-------~~~~li 275 (673)
T 2wv9_A 203 LYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQK-------RLRTAV 275 (673)
T ss_dssp EEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHT-------TCCEEE
T ss_pred eeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhC-------CCcEEE
Confidence 3445666 7999999 9999888 889999999999999999999999886653 578999
Q ss_pred EcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHHHHhc-CCcEEEEccHHHHHHHHccccCCCCccEEEEeccc
Q 013176 106 LAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRR-GVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEAD 184 (448)
Q Consensus 106 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h 184 (448)
++||++|+.|+.+.++.+ ++.. ..+. ...... +.-+-+.+...+...+... ..+.++++||+||+|
T Consensus 276 laPTr~La~Q~~~~l~~~----~i~~--~~~~------l~~v~tp~~ll~~l~~~~l~~~l~~~-~~l~~l~lvViDEaH 342 (673)
T 2wv9_A 276 LAPTRVVAAEMAEALRGL----PVRY--LTPA------VQREHSGNEIVDVMCHATLTHRLMSP-LRVPNYNLFVMDEAH 342 (673)
T ss_dssp EESSHHHHHHHHHHTTTS----CCEE--CCC---------CCCCSCCCEEEEEHHHHHHHHHSS-SCCCCCSEEEEESTT
T ss_pred EccHHHHHHHHHHHHhcC----Ceee--eccc------ccccCCHHHHHHHHHhhhhHHHHhcc-cccccceEEEEeCCc
Confidence 999999999999988764 2221 0000 000111 1123344555554444432 467889999999999
Q ss_pred ccccCCCHHHHHHHHHHc-CCCcceEEEeccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceEEEEecchhHHHHHH
Q 013176 185 RMLDMGFEPQIRKIVTQI-RPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLI 263 (448)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~-~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 263 (448)
++ +..+...+..+...+ .+..++++||||+++.+..+... ..+...... .... .....+.
T Consensus 343 ~~-~~~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~~--~~~i~~v~~---------------~~~~-~~~~~~l 403 (673)
T 2wv9_A 343 FT-DPASIAARGYIATRVEAGEAAAIFMTATPPGTSDPFPDT--NSPVHDVSS---------------EIPD-RAWSSGF 403 (673)
T ss_dssp CC-CHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCC--SSCEEEEEC---------------CCCS-SCCSSCC
T ss_pred cc-CccHHHHHHHHHHhccccCCcEEEEcCCCChhhhhhccc--CCceEEEee---------------ecCH-HHHHHHH
Confidence 97 211122333333333 26789999999997653221110 011111000 0000 1111122
Q ss_pred HHHHhhhcCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCCCccE
Q 013176 264 KLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVKDIKC 343 (448)
Q Consensus 264 ~~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~ 343 (448)
..+.+ .++++||||++++.++.+++.|++.++++..+|+. +|.++++.|++|+.+|||||+++++|+|+| +++
T Consensus 404 ~~l~~--~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~ 476 (673)
T 2wv9_A 404 EWITD--YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASR 476 (673)
T ss_dssp HHHHS--CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSE
T ss_pred HHHHh--CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcE
Confidence 23332 46799999999999999999999999999999993 788999999999999999999999999999 999
Q ss_pred EEE--------------------cCCCCChhhhhhcccccCCC-CCCceEEEEe---cCCChHHHHHHHHHH
Q 013176 344 VVN--------------------YDFPTSLEDYVHRIGRTGRA-GARGTAFTFF---THSNAKFARDLIKIL 391 (448)
Q Consensus 344 Vi~--------------------~~~p~s~~~~~Q~~GR~~R~-g~~g~~~~~~---~~~~~~~~~~l~~~~ 391 (448)
||+ ++.|.+.++|+||+||+||. ++.|.+++|+ ++.+...+..+...+
T Consensus 477 VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~ 548 (673)
T 2wv9_A 477 VIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKI 548 (673)
T ss_dssp EEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred EEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHHH
Confidence 997 56889999999999999999 7899999996 456655555554443
No 48
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=1.2e-37 Score=314.34 Aligned_cols=314 Identities=19% Similarity=0.194 Sum_probs=192.0
Q ss_pred CCcHHHHhHHHHhhc----C-CcEEEEcCCCChHHHHHHHHHHHHhhcCC-CccCCCCceEEEEcCcHHHHHHHH-HHHH
Q 013176 49 EPTPIQAQGWPMALK----G-RDLIGIAETGSGKTLSYLLPAFVHVSAQP-RLVQGEGPIVLVLAPTRELAVQIQ-EEAL 121 (448)
Q Consensus 49 ~~~~~Q~~~i~~~~~----~-~~~lv~~~tGsGKT~~~~l~~l~~~~~~~-~~~~~~~~~vlil~P~~~L~~q~~-~~~~ 121 (448)
.|+|+|.++++.+.+ + +++++++|||+|||++++..+...+.... ......++++||++|+++|+.|+. +.++
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~~ 257 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTFT 257 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CCT
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 699999999998876 3 67899999999999996655544433321 111113678999999999999999 7777
Q ss_pred HhhcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHH----ccccCCCCccEEEEecccccccCCCHHHHHH
Q 013176 122 KFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLE----AQHTNLRRVTYLVLDEADRMLDMGFEPQIRK 197 (448)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~----~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~ 197 (448)
.+.. .+..+.++ ......+|+|+||++|..... ........+++||+||||++.... ...+..
T Consensus 258 ~~~~----~~~~~~~~--------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~~ 324 (590)
T 3h1t_A 258 PFGD----ARHKIEGG--------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWRE 324 (590)
T ss_dssp TTCS----SEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CHH
T ss_pred hcch----hhhhhhcc--------CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHHHH
Confidence 6543 22222222 123467999999999987654 223345678999999999987643 245566
Q ss_pred HHHHcCCCcceEEEeccCchHHHHHHHHHcCCCeEEE-----------------eCCccccccc-------------Ccc
Q 013176 198 IVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVI-----------------IGSLELKANQ-------------SIN 247 (448)
Q Consensus 198 ~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~-------------~~~ 247 (448)
++..++ ..++++||||+..........+++.+.... .......... .+.
T Consensus 325 il~~~~-~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (590)
T 3h1t_A 325 ILEYFE-PAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIP 403 (590)
T ss_dssp HHHHST-TSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC------------------
T ss_pred HHHhCC-cceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeeccccccccccccccccccc
Confidence 666664 567899999987543322333333322211 1000000000 000
Q ss_pred eEEEEecc-------hhHHH----HHHHHHHhhhcCCcEEEEecchhHHHHHHHHHHhCCC--------CeEEEcCCCCH
Q 013176 248 QVVEVVTE-------AEKYN----RLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGW--------PALSIHGDKNQ 308 (448)
Q Consensus 248 ~~~~~~~~-------~~~~~----~l~~~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~~~--------~~~~~~~~~~~ 308 (448)
........ ..+.. .+.+++.....+.++||||+++++|+.+++.|++.+. .+..+||+++.
T Consensus 404 ~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~ 483 (590)
T 3h1t_A 404 DGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK 483 (590)
T ss_dssp -----CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH
T ss_pred cccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH
Confidence 00000000 01112 2333444444467999999999999999999977543 26788888764
Q ss_pred HHHHHHHHHHhcCCCC---EEEEeccccCCCCCCCccEEEEcCCCCChhhhhhcccccCCCCC--CceEEEEec
Q 013176 309 SERDWVLAEFRSGRSP---IMTATDVAARGLDVKDIKCVVNYDFPTSLEDYVHRIGRTGRAGA--RGTAFTFFT 377 (448)
Q Consensus 309 ~~r~~~~~~f~~g~~~---vLv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~--~g~~~~~~~ 377 (448)
+|.++++.|++++.+ |||+|+++++|+|+|++++||++++|+|+..|+|++||++|.+. .+..+++++
T Consensus 484 -~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~D 556 (590)
T 3h1t_A 484 -IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNIID 556 (590)
T ss_dssp -HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEEE
T ss_pred -HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEEEe
Confidence 699999999998765 88889999999999999999999999999999999999999875 333344443
No 49
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=7.4e-38 Score=320.69 Aligned_cols=336 Identities=19% Similarity=0.287 Sum_probs=240.5
Q ss_pred CcccccccCCCCHHHHHHHHHCCCCCCcHHHHhHHHHhhcC-CcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCce
Q 013176 24 RPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKG-RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPI 102 (448)
Q Consensus 24 ~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~~~-~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~ 102 (448)
.|..+|+++++++.+.+.++..+ ..|.+.|+++++.++.+ +++++++|||+|||+ +++++....... .+.+.+
T Consensus 69 ~~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~~---~~~g~~ 142 (773)
T 2xau_A 69 GKINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEMP---HLENTQ 142 (773)
T ss_dssp SSBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHCG---GGGTCE
T ss_pred CCCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhccc---cCCCce
Confidence 45678999999999999999887 58999999999887754 679999999999998 344442211110 112567
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhc-CCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEe
Q 013176 103 VLVLAPTRELAVQIQEEALKFGS-RAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLD 181 (448)
Q Consensus 103 vlil~P~~~L~~q~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvD 181 (448)
+++++|+++|+.|+.+.+..... ..+..+........ ......+|+++||+++.+.+... ..+.++++||+|
T Consensus 143 ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~------~~~~~~~I~v~T~G~l~r~l~~~-~~l~~~~~lIlD 215 (773)
T 2xau_A 143 VACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFEN------KTSNKTILKYMTDGMLLREAMED-HDLSRYSCIILD 215 (773)
T ss_dssp EEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEE------ECCTTCSEEEEEHHHHHHHHHHS-TTCTTEEEEEEC
T ss_pred EEecCchHHHHHHHHHHHHHHhCCchhheecceecccc------ccCCCCCEEEECHHHHHHHHhhC-ccccCCCEEEec
Confidence 99999999999999988765432 22222221111110 01235789999999998877653 458889999999
Q ss_pred cccc-cccCC-CHHHHHHHHHHcCCCcceEEEeccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceEEEEecchhHH
Q 013176 182 EADR-MLDMG-FEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKY 259 (448)
Q Consensus 182 E~h~-~~~~~-~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (448)
|+|. .++.. ....+..+.. ..+..+++++|||++.. .+. .++.....+.+.... ..+...+......+..
T Consensus 216 Eah~R~ld~d~~~~~l~~l~~-~~~~~~iIl~SAT~~~~--~l~-~~~~~~~vi~v~gr~----~pv~~~~~~~~~~~~~ 287 (773)
T 2xau_A 216 EAHERTLATDILMGLLKQVVK-RRPDLKIIIMSATLDAE--KFQ-RYFNDAPLLAVPGRT----YPVELYYTPEFQRDYL 287 (773)
T ss_dssp SGGGCCHHHHHHHHHHHHHHH-HCTTCEEEEEESCSCCH--HHH-HHTTSCCEEECCCCC----CCEEEECCSSCCSCHH
T ss_pred CccccccchHHHHHHHHHHHH-hCCCceEEEEeccccHH--HHH-HHhcCCCcccccCcc----cceEEEEecCCchhHH
Confidence 9995 44422 1223334433 34678999999999643 333 344443333332211 1122222222233333
Q ss_pred HHHHHHHHhh---hcCCcEEEEecchhHHHHHHHHHHh-----------CCCCeEEEcCCCCHHHHHHHHHHHh-----c
Q 013176 260 NRLIKLLKEV---MDGSRILIFTETKKGCDQVTRQLRM-----------DGWPALSIHGDKNQSERDWVLAEFR-----S 320 (448)
Q Consensus 260 ~~l~~~l~~~---~~~~k~lVf~~~~~~~~~l~~~L~~-----------~~~~~~~~~~~~~~~~r~~~~~~f~-----~ 320 (448)
......+... ..++++||||+++++++.+++.|.+ .++.+..+|++++.++|..+++.|+ +
T Consensus 288 ~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~ 367 (773)
T 2xau_A 288 DSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGR 367 (773)
T ss_dssp HHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSS
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCC
Confidence 3333322221 2467999999999999999999975 4678999999999999999999999 9
Q ss_pred CCCCEEEEeccccCCCCCCCccEEEEcCC------------------CCChhhhhhcccccCCCCCCceEEEEecCCCh
Q 013176 321 GRSPIMTATDVAARGLDVKDIKCVVNYDF------------------PTSLEDYVHRIGRTGRAGARGTAFTFFTHSNA 381 (448)
Q Consensus 321 g~~~vLv~T~~~~~Gidi~~~~~Vi~~~~------------------p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 381 (448)
|..+|||||+++++|||+|++++||+++. |.|..+|.||+||+||. ..|.|+.++++.+.
T Consensus 368 g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 368 PGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp CCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHHH
T ss_pred CceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHHh
Confidence 99999999999999999999999999887 88999999999999999 88999999875443
No 50
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=6.4e-38 Score=310.38 Aligned_cols=279 Identities=22% Similarity=0.246 Sum_probs=208.1
Q ss_pred CCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCC
Q 013176 49 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAG 128 (448)
Q Consensus 49 ~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~ 128 (448)
.++++|+++++.+..++++++++|||||||.+|.++++.. +.+++|++||++|+.|+.+.+.+.. +
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~-----------g~~vLVl~PTReLA~Qia~~l~~~~---g 282 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ-----------GYKVLVLNPSVAATLGFGAYMSKAH---G 282 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT-----------TCCEEEEESCHHHHHHHHHHHHHHH---S
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC-----------CCeEEEEcchHHHHHHHHHHHHHHh---C
Confidence 3466777777777788899999999999999988887763 5579999999999999999887653 3
Q ss_pred ceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCCCHHHHHHHHHHcCCCcc-
Q 013176 129 IRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQ- 207 (448)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~- 207 (448)
..+....++.. ...+.+|+|+||++| +......+.++++||+||+|.+ +.++...+..++..++...+
T Consensus 283 ~~vg~~vG~~~-------~~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH~l-~~~~~~~l~~Il~~l~~~~~~ 351 (666)
T 3o8b_A 283 IDPNIRTGVRT-------ITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECHST-DSTTILGIGTVLDQAETAGAR 351 (666)
T ss_dssp CCCEEECSSCE-------ECCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTTCC-SHHHHHHHHHHHHHTTTTTCS
T ss_pred CCeeEEECcEe-------ccCCCCEEEECcHHH---HhCCCcccCcccEEEEccchhc-CccHHHHHHHHHHhhhhcCCc
Confidence 34444555532 345689999999998 3455667888999999999854 44566778888888876666
Q ss_pred -eEEEeccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceEEEEecchhHHHHHHHHHHhhhcCCcEEEEecchhHHH
Q 013176 208 -TLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKEVMDGSRILIFTETKKGCD 286 (448)
Q Consensus 208 -~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~k~lVf~~~~~~~~ 286 (448)
++++|||++..+. ...+......... ... ......... + +...++++||||++++.++
T Consensus 352 llil~SAT~~~~i~------~~~p~i~~v~~~~---~~~----i~~~~~~~~-------l-~~~~~~~vLVFv~Tr~~ae 410 (666)
T 3o8b_A 352 LVVLATATPPGSVT------VPHPNIEEVALSN---TGE----IPFYGKAIP-------I-EAIRGGRHLIFCHSKKKCD 410 (666)
T ss_dssp EEEEEESSCTTCCC------CCCTTEEEEECBS---CSS----EEETTEEEC-------G-GGSSSSEEEEECSCHHHHH
T ss_pred eEEEECCCCCcccc------cCCcceEEEeecc---cch----hHHHHhhhh-------h-hhccCCcEEEEeCCHHHHH
Confidence 6778999986311 1111111110000 000 000000000 0 1225779999999999999
Q ss_pred HHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCCCccEEE----------EcC--------
Q 013176 287 QVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVKDIKCVV----------NYD-------- 348 (448)
Q Consensus 287 ~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~Vi----------~~~-------- 348 (448)
.+++.|++.++++..+||++++++ |+++..+|||||+++++|||+| +++|| +||
T Consensus 411 ~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~ 482 (666)
T 3o8b_A 411 ELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIE 482 (666)
T ss_dssp HHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEE
T ss_pred HHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccc
Confidence 999999999999999999999874 4556679999999999999997 99988 566
Q ss_pred ---CCCChhhhhhcccccCCCCCCceEEEEecCCChHH
Q 013176 349 ---FPTSLEDYVHRIGRTGRAGARGTAFTFFTHSNAKF 383 (448)
Q Consensus 349 ---~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 383 (448)
.|.+.++|+||+||+|| ++.|. +.|+.+.+...
T Consensus 483 ~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~ 518 (666)
T 3o8b_A 483 TTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERPS 518 (666)
T ss_dssp EEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBCS
T ss_pred cccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhhc
Confidence 88999999999999999 89999 88888765543
No 51
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=3.9e-36 Score=266.34 Aligned_cols=215 Identities=51% Similarity=0.882 Sum_probs=186.5
Q ss_pred cCCCCCccccccc-CCCCHHHHHHHHHCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCC-cc
Q 013176 19 GHDVPRPIRIFQE-ANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPR-LV 96 (448)
Q Consensus 19 ~~~~~~p~~~~~~-~~l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~-~~ 96 (448)
.+..|.|..+|++ +++++.+.+.+.++||..|+++|.++++.+++++++++.+|||+|||++|+++++..+..... ..
T Consensus 11 ~~~~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~ 90 (228)
T 3iuy_A 11 KRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISRE 90 (228)
T ss_dssp CCCCCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC-------
T ss_pred cCcCCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhh
Confidence 5788999999999 799999999999999999999999999999999999999999999999999999988764321 11
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCcc
Q 013176 97 QGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVT 176 (448)
Q Consensus 97 ~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~ 176 (448)
...+++++|++||++|+.|+.+.++++. ..++++..++++.........+..+++|+|+||++|.+.+......+.+++
T Consensus 91 ~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~ 169 (228)
T 3iuy_A 91 QRNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSIT 169 (228)
T ss_dssp --CCCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCC
T ss_pred ccCCCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccce
Confidence 2247789999999999999999999986 447888999999888778888888999999999999999888878889999
Q ss_pred EEEEecccccccCCCHHHHHHHHHHcCCCcceEEEeccCchHHHHHHHHHcCCCeEEE
Q 013176 177 YLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVI 234 (448)
Q Consensus 177 ~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~ 234 (448)
++|+||||++.+++|...+..++..++++.|++++|||+++.+..++..++.+|..+.
T Consensus 170 ~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~ 227 (228)
T 3iuy_A 170 YLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVY 227 (228)
T ss_dssp EEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEE
T ss_pred EEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 9999999999999999999999999999999999999999999999999998887654
No 52
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=9.3e-37 Score=294.61 Aligned_cols=269 Identities=17% Similarity=0.165 Sum_probs=188.4
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchH
Q 013176 63 KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGP 142 (448)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (448)
+++++++++|||||||++|+++++..+... +.+++|++||++|+.|+.+.+. ++.+....+....
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~-------g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~-- 65 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKK-------RLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQS-- 65 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHT-------TCCEEEEESSHHHHHHHHHHTT------TSCEEEC--------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhC-------CCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCccc--
Confidence 367899999999999999999998666542 5689999999999999888775 2344433332111
Q ss_pred hHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCCCHHHHHHHHHHc-CCCcceEEEeccCchHHHH
Q 013176 143 QIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQI-RPDRQTLYWSATWPREVET 221 (448)
Q Consensus 143 ~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~-~~~~~~v~~SAT~~~~~~~ 221 (448)
.-..+..+.+.|.+.+...+.. ...+.++++||+||+|++ ...+......+.... ++..++++||||+++.+..
T Consensus 66 ---~~~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~ 140 (431)
T 2v6i_A 66 ---ERTGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGTTEA 140 (431)
T ss_dssp ------CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCS
T ss_pred ---cCCCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhh
Confidence 1112345667788888666555 456888999999999997 322223333333332 4678999999999864221
Q ss_pred HHHHHcCCCeEEEeCCcccccccCcceEEEEecchhHHHHHHHHHHhhhcCCcEEEEecchhHHHHHHHHHHhCCCCeEE
Q 013176 222 LARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALS 301 (448)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~ 301 (448)
+... ..+...... .. .......+.+.+.+ .++++||||++++.++.+++.|++.+.++..
T Consensus 141 ~~~~--~~~i~~~~~---------------~~-~~~~~~~~~~~l~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~ 200 (431)
T 2v6i_A 141 FPPS--NSPIIDEET---------------RI-PDKAWNSGYEWITE--FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLY 200 (431)
T ss_dssp SCCC--SSCCEEEEC---------------CC-CSSCCSSCCHHHHS--CSSCEEEECSSHHHHHHHHHHHHHTTCCEEE
T ss_pred hcCC--CCceeeccc---------------cC-CHHHHHHHHHHHHc--CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEE
Confidence 1100 011110000 00 01111222334443 3568999999999999999999999999999
Q ss_pred EcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCCCccE-----------------EEEcCCCCChhhhhhcccccC
Q 013176 302 IHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVKDIKC-----------------VVNYDFPTSLEDYVHRIGRTG 364 (448)
Q Consensus 302 ~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~-----------------Vi~~~~p~s~~~~~Q~~GR~~ 364 (448)
+||+ +|.++++.|++|+.+|||||+++++|+|+| +.+ ||+++.|.+..+|+||+||+|
T Consensus 201 lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~G 275 (431)
T 2v6i_A 201 LNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIG 275 (431)
T ss_dssp ESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSS
T ss_pred eCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccC
Confidence 9997 577899999999999999999999999999 554 578889999999999999999
Q ss_pred CCCCCceE-EEEe
Q 013176 365 RAGARGTA-FTFF 376 (448)
Q Consensus 365 R~g~~g~~-~~~~ 376 (448)
|.|..+.+ +++.
T Consensus 276 R~g~~~~~~~~~~ 288 (431)
T 2v6i_A 276 RNPEKLGDIYAYS 288 (431)
T ss_dssp CCTTCCCCEEEEC
T ss_pred CCCCCCCeEEEEc
Confidence 99864444 4444
No 53
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=2.2e-36 Score=317.97 Aligned_cols=333 Identities=17% Similarity=0.123 Sum_probs=228.2
Q ss_pred CCcHHHHhHHHHhhcC--CcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcC
Q 013176 49 EPTPIQAQGWPMALKG--RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSR 126 (448)
Q Consensus 49 ~~~~~Q~~~i~~~~~~--~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~ 126 (448)
.|+|||.+++..+... .++++.++||+|||++++..+...+... ...++||+||+ .|+.||.+++.+..
T Consensus 153 ~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g------~~~rvLIVvP~-sLl~Qw~~E~~~~f-- 223 (968)
T 3dmq_A 153 SLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSG------AAERVLIIVPE-TLQHQWLVEMLRRF-- 223 (968)
T ss_dssp CCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTS------SCCCEEEECCT-TTHHHHHHHHHHHS--
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhC------CCCeEEEEeCH-HHHHHHHHHHHHHh--
Confidence 7999999999988874 4889999999999999877766655432 24579999999 99999999997654
Q ss_pred CCceEEEEEcCCCchHhHH---HHhcCCcEEEEccHHHHHHHHc-cccCCCCccEEEEecccccccCCCH--HHHHHHHH
Q 013176 127 AGIRSTCIYGGAPKGPQIR---DLRRGVEIVIATPGRLIDMLEA-QHTNLRRVTYLVLDEADRMLDMGFE--PQIRKIVT 200 (448)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~---~~~~~~~iiv~T~~~l~~~~~~-~~~~~~~~~~iIvDE~h~~~~~~~~--~~~~~~~~ 200 (448)
++++..+.++... .... ......+|+|+|++.+...... ......++++|||||||++.+.... ..+..+..
T Consensus 224 -~l~v~v~~~~~~~-~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~ 301 (968)
T 3dmq_A 224 -NLRFALFDDERYA-EAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQ 301 (968)
T ss_dssp -CCCCEECCHHHHH-HHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHH
T ss_pred -CCCEEEEccchhh-hhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHH
Confidence 4555444432211 1111 1112478999999888542111 1123457899999999999764421 22333333
Q ss_pred HcCCCcceEEEeccCch----HHHHHHHHHcCC---------------------------C-------------------
Q 013176 201 QIRPDRQTLYWSATWPR----EVETLARQFLRN---------------------------P------------------- 230 (448)
Q Consensus 201 ~~~~~~~~v~~SAT~~~----~~~~~~~~~~~~---------------------------~------------------- 230 (448)
......+++++||||.. ++..+...+... .
T Consensus 302 L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~ 381 (968)
T 3dmq_A 302 LAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQD 381 (968)
T ss_dssp HHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTC
T ss_pred HhhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchh
Confidence 33355679999999843 111111000000 0
Q ss_pred ----------------------------------eEEEeCCcccc-c-ccCcceEE------------------------
Q 013176 231 ----------------------------------YKVIIGSLELK-A-NQSINQVV------------------------ 250 (448)
Q Consensus 231 ----------------------------------~~~~~~~~~~~-~-~~~~~~~~------------------------ 250 (448)
..+........ . ........
T Consensus 382 ~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 461 (968)
T 3dmq_A 382 IEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAE 461 (968)
T ss_dssp SSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGG
T ss_pred hHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhH
Confidence 00000000000 0 00000000
Q ss_pred ---------------------EEecchhHHHHHHHHHHhhhcCCcEEEEecchhHHHHHHHHHHh-CCCCeEEEcCCCCH
Q 013176 251 ---------------------EVVTEAEKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRM-DGWPALSIHGDKNQ 308 (448)
Q Consensus 251 ---------------------~~~~~~~~~~~l~~~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~ 308 (448)
.......|...+.+++.. ..+.++||||+++..+..+++.|++ .++++..+||+++.
T Consensus 462 ~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~-~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~ 540 (968)
T 3dmq_A 462 DRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTS-HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSI 540 (968)
T ss_dssp GGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHH-TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCT
T ss_pred HHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHh-CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 011233467777777776 4577999999999999999999995 59999999999999
Q ss_pred HHHHHHHHHHhcCC--CCEEEEeccccCCCCCCCccEEEEcCCCCChhhhhhcccccCCCCCCceEEEEecCCChHHHHH
Q 013176 309 SERDWVLAEFRSGR--SPIMTATDVAARGLDVKDIKCVVNYDFPTSLEDYVHRIGRTGRAGARGTAFTFFTHSNAKFARD 386 (448)
Q Consensus 309 ~~r~~~~~~f~~g~--~~vLv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~ 386 (448)
.+|..+++.|++|+ ++|||||+++++|+|+|++++||++|+|+++..|.|++||++|.|+.+.++++....+....+.
T Consensus 541 ~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~ 620 (968)
T 3dmq_A 541 IERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSV 620 (968)
T ss_dssp THHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHH
T ss_pred HHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChHHHH
Confidence 99999999999998 9999999999999999999999999999999999999999999999987766655444444445
Q ss_pred HHHHHHH
Q 013176 387 LIKILQE 393 (448)
Q Consensus 387 l~~~~~~ 393 (448)
+.+.+.+
T Consensus 621 i~~~~~~ 627 (968)
T 3dmq_A 621 LVRWYHE 627 (968)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5554433
No 54
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=2.1e-37 Score=301.55 Aligned_cols=280 Identities=17% Similarity=0.183 Sum_probs=193.3
Q ss_pred HhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEE
Q 013176 55 AQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCI 134 (448)
Q Consensus 55 ~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~ 134 (448)
......+.+++++++++|||||||++|+++++..+... +.+++|++||++|+.|+.+.+..+ .+...
T Consensus 12 ~~~~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~-------~~~~lvl~Ptr~La~Q~~~~l~g~------~v~~~ 78 (459)
T 2z83_A 12 RGSPNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQ-------RLRTAVLAPTRVVAAEMAEALRGL------PVRYQ 78 (459)
T ss_dssp ---CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHT-------TCCEEEEECSHHHHHHHHHHTTTS------CEEEC
T ss_pred HHHHHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhC-------CCcEEEECchHHHHHHHHHHhcCc------eEeEE
Confidence 33344566678999999999999999999999887653 568999999999999999988732 22111
Q ss_pred EcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCCCHHHHHHHHH-HcCCCcceEEEec
Q 013176 135 YGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVT-QIRPDRQTLYWSA 213 (448)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~-~~~~~~~~v~~SA 213 (448)
.+.... ....+..+.++|...+...+... ..+.++++||+||||.+... +...+..+.. ...+..++++|||
T Consensus 79 ~~~~~~-----~~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~~-~~~~~~~~~~~~~~~~~~~il~SA 151 (459)
T 2z83_A 79 TSAVQR-----EHQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDPA-SIAARGYIATKVELGEAAAIFMTA 151 (459)
T ss_dssp C-------------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSHH-HHHHHHHHHHHHHTTSCEEEEECS
T ss_pred eccccc-----CCCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCCch-hhHHHHHHHHHhccCCccEEEEEc
Confidence 111100 01123446788888877665543 45788999999999984110 0111111111 1236789999999
Q ss_pred cCchHHHHHHHHHcCCCeEEEeCCcccccccCcceEEEEecchhHHHHHHHHHHhhhcCCcEEEEecchhHHHHHHHHHH
Q 013176 214 TWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLR 293 (448)
Q Consensus 214 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~k~lVf~~~~~~~~~l~~~L~ 293 (448)
|++..+..+... ..+........ . ......+...+.+ .++++||||++++.++.+++.|+
T Consensus 152 T~~~~~~~~~~~--~~pi~~~~~~~---------------~-~~~~~~~~~~l~~--~~~~~LVF~~s~~~~~~l~~~L~ 211 (459)
T 2z83_A 152 TPPGTTDPFPDS--NAPIHDLQDEI---------------P-DRAWSSGYEWITE--YAGKTVWFVASVKMGNEIAMCLQ 211 (459)
T ss_dssp SCTTCCCSSCCC--SSCEEEEECCC---------------C-SSCCSSCCHHHHH--CCSCEEEECSCHHHHHHHHHHHH
T ss_pred CCCcchhhhccC--CCCeEEecccC---------------C-cchhHHHHHHHHh--cCCCEEEEeCChHHHHHHHHHHH
Confidence 998653222110 11221111000 0 0001111223333 36789999999999999999999
Q ss_pred hCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCCCccEEEE--------------------cCCCCCh
Q 013176 294 MDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVKDIKCVVN--------------------YDFPTSL 353 (448)
Q Consensus 294 ~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~Vi~--------------------~~~p~s~ 353 (448)
+.++.+..+|++ +|..+++.|++|+.+|||||+++++|+|+|+ ++||+ ++.|.+.
T Consensus 212 ~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~ 286 (459)
T 2z83_A 212 RAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITS 286 (459)
T ss_dssp HTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCH
T ss_pred hcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCH
Confidence 999999999985 5777899999999999999999999999999 99998 6799999
Q ss_pred hhhhhcccccCCCCC-CceEEEEecCC
Q 013176 354 EDYVHRIGRTGRAGA-RGTAFTFFTHS 379 (448)
Q Consensus 354 ~~~~Q~~GR~~R~g~-~g~~~~~~~~~ 379 (448)
.+|+||+||+||.|. .|.+++|+...
T Consensus 287 ~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 287 ASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp HHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred HHHHHhccccCCCCCCCCeEEEEEccc
Confidence 999999999999997 89999999875
No 55
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=7.8e-36 Score=268.69 Aligned_cols=227 Identities=43% Similarity=0.681 Sum_probs=198.7
Q ss_pred cCCeEEecCCCCC--cccccccCCCCHHHHHHHHHCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHh
Q 013176 12 RREITVEGHDVPR--PIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHV 89 (448)
Q Consensus 12 ~~~~~~~~~~~~~--p~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~ 89 (448)
..++.+.|...|. |..+|+++++++.+.+.+..+||..|+++|.++++.+++++++++++|||+|||++|+++++..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l 85 (253)
T 1wrb_A 6 SIPVSVTGPDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHL 85 (253)
T ss_dssp CCCCCEECCSSSCCSCCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHH
T ss_pred hCceeeeCCCCCCCCccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHH
Confidence 4456778888887 89999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hcCCCc----cCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHH
Q 013176 90 SAQPRL----VQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDML 165 (448)
Q Consensus 90 ~~~~~~----~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~ 165 (448)
...... ....++++||++||++|+.|+.+.++++....++.+..++|+.........+..+++|+|+||++|.+.+
T Consensus 86 ~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l 165 (253)
T 1wrb_A 86 VCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFI 165 (253)
T ss_dssp HTTCC------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHH
T ss_pred HhhccccccccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHH
Confidence 653211 1123568999999999999999999999888888999999998888888888888999999999999999
Q ss_pred HccccCCCCccEEEEecccccccCCCHHHHHHHHHHc--CC--CcceEEEeccCchHHHHHHHHHcCCCeEEEeCCc
Q 013176 166 EAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQI--RP--DRQTLYWSATWPREVETLARQFLRNPYKVIIGSL 238 (448)
Q Consensus 166 ~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~--~~--~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 238 (448)
......+.+++++|+||||++.+++|...+..++..+ +. ..|++++|||+++.+..++..++.++..+.+...
T Consensus 166 ~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 242 (253)
T 1wrb_A 166 EKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRV 242 (253)
T ss_dssp HTTSBCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC--
T ss_pred HcCCCChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCC
Confidence 8887788899999999999999999999999998853 33 6789999999999999999999998887766543
No 56
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=1.3e-35 Score=264.24 Aligned_cols=214 Identities=32% Similarity=0.527 Sum_probs=177.9
Q ss_pred EecCCCCCcccccccCCCCHHHHHHHHHCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCcc
Q 013176 17 VEGHDVPRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLV 96 (448)
Q Consensus 17 ~~~~~~~~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~ 96 (448)
+...+.|.+..+|+++++++.+.+.+..+||..|+++|.++++.+++++++++.+|||+|||++|+++++..+....
T Consensus 20 ~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~--- 96 (237)
T 3bor_A 20 VIESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEF--- 96 (237)
T ss_dssp -------CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTS---
T ss_pred cccCCCCCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcC---
Confidence 34567788899999999999999999999999999999999999999999999999999999999999998875432
Q ss_pred CCCCceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHHHHhcC-CcEEEEccHHHHHHHHccccCCCCc
Q 013176 97 QGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRG-VEIVIATPGRLIDMLEAQHTNLRRV 175 (448)
Q Consensus 97 ~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~iiv~T~~~l~~~~~~~~~~~~~~ 175 (448)
.+.+++|++|+++|+.|+.+.++++....++.+...+++.........+..+ ++|+|+||++|.+.+......+.++
T Consensus 97 --~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~ 174 (237)
T 3bor_A 97 --KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWI 174 (237)
T ss_dssp --CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTC
T ss_pred --CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccC
Confidence 2568999999999999999999999887788888888888776666666555 8999999999999998877788889
Q ss_pred cEEEEecccccccCCCHHHHHHHHHHcCCCcceEEEeccCchHHHHHHHHHcCCCeEEEe
Q 013176 176 TYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVII 235 (448)
Q Consensus 176 ~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~ 235 (448)
++||+||||++.++++...+..++..+++..+++++|||+++++..++..++.+|..+.+
T Consensus 175 ~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v 234 (237)
T 3bor_A 175 KMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILV 234 (237)
T ss_dssp CEEEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC-
T ss_pred cEEEECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEe
Confidence 999999999999999999999999999889999999999999999999999988876643
No 57
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=6.9e-35 Score=254.28 Aligned_cols=202 Identities=32% Similarity=0.587 Sum_probs=183.3
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEE
Q 013176 27 RIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVL 106 (448)
Q Consensus 27 ~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil 106 (448)
++|+++++++.+.+.+..+||..|+++|.++++.+++++++++.+|||+|||++|+++++..+.... .+++++|+
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~-----~~~~~lil 77 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKK-----DNIQAMVI 77 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTS-----CSCCEEEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccC-----CCeeEEEE
Confidence 4799999999999999999999999999999999999999999999999999999999998865432 35689999
Q ss_pred cCcHHHHHHHHHHHHHhhcCC-CceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccc
Q 013176 107 APTRELAVQIQEEALKFGSRA-GIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADR 185 (448)
Q Consensus 107 ~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~ 185 (448)
+|+++|+.|+.+.++++.... ++++..++|+.........+..+++|+|+||+++.+.+......+.+++++|+||||+
T Consensus 78 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~ 157 (206)
T 1vec_A 78 VPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADK 157 (206)
T ss_dssp CSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHH
T ss_pred eCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHH
Confidence 999999999999999988766 7888889988887777777778899999999999999888777888999999999999
Q ss_pred cccCCCHHHHHHHHHHcCCCcceEEEeccCchHHHHHHHHHcCCCeEE
Q 013176 186 MLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKV 233 (448)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~ 233 (448)
+.+.++...+..+...+++..+++++|||+++++..++..++.+|..+
T Consensus 158 ~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 158 LLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp HTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred hHhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 999889999999999998899999999999999999999999888654
No 58
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=4.7e-35 Score=262.14 Aligned_cols=207 Identities=44% Similarity=0.693 Sum_probs=188.0
Q ss_pred CcccccccCCCCHHHHHHHHHCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceE
Q 013176 24 RPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIV 103 (448)
Q Consensus 24 ~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~v 103 (448)
.+..+|+++++++.+.+.++.+||..|+++|.++++.++.++++++.+|||+|||++|+++++..+.... .+.++
T Consensus 40 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~-----~~~~~ 114 (249)
T 3ber_A 40 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP-----QRLFA 114 (249)
T ss_dssp HHHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSC-----CSSCE
T ss_pred cccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCC-----CCceE
Confidence 4468899999999999999999999999999999999999999999999999999999999998876642 25679
Q ss_pred EEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHc-cccCCCCccEEEEec
Q 013176 104 LVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEA-QHTNLRRVTYLVLDE 182 (448)
Q Consensus 104 lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~-~~~~~~~~~~iIvDE 182 (448)
+|++|+++|+.|+.+.++++....++++..++|+.........+..+++|+|+||++|.+.+.. ....+.++++||+||
T Consensus 115 lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDE 194 (249)
T 3ber_A 115 LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDE 194 (249)
T ss_dssp EEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECS
T ss_pred EEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcC
Confidence 9999999999999999999988888999999999887777777788899999999999998876 445688899999999
Q ss_pred ccccccCCCHHHHHHHHHHcCCCcceEEEeccCchHHHHHHHHHcCCCeEEEe
Q 013176 183 ADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVII 235 (448)
Q Consensus 183 ~h~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~ 235 (448)
||++.++++...+..++..+++..+++++|||+++.+..++..++.+|..+.+
T Consensus 195 ah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v 247 (249)
T 3ber_A 195 ADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAV 247 (249)
T ss_dssp HHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEEC
T ss_pred hhhhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEe
Confidence 99999999999999999999889999999999999999999999999887654
No 59
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=4.8e-35 Score=289.99 Aligned_cols=327 Identities=17% Similarity=0.207 Sum_probs=219.4
Q ss_pred CCcHHHHhHHHHhh----cCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhh
Q 013176 49 EPTPIQAQGWPMAL----KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (448)
Q Consensus 49 ~~~~~Q~~~i~~~~----~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~ 124 (448)
.|+|||.++++.+. .+.+.++..+||+|||++++..+.. +... +...++||+|| ..|+.||.++++++.
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~-~~~~-----~~~~~~LIv~P-~~l~~qw~~e~~~~~ 109 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSD-AKKE-----NELTPSLVICP-LSVLKNWEEELSKFA 109 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHH-HHHT-----TCCSSEEEEEC-STTHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHH-HHhc-----CCCCCEEEEcc-HHHHHHHHHHHHHHC
Confidence 79999999998763 4678999999999999986554444 3322 12457999999 468899999999986
Q ss_pred cCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCCCHHHHHHHHHHcCC
Q 013176 125 SRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRP 204 (448)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~ 204 (448)
. +.++..++++... .....++|+|+||+.+..... .....+++||+||||++.+... .....+..+ +
T Consensus 110 ~--~~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~~--~~~~~l~~l-~ 176 (500)
T 1z63_A 110 P--HLRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQT--KIFKAVKEL-K 176 (500)
T ss_dssp T--TSCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTTS--HHHHHHHTS-C
T ss_pred C--CceEEEEecCchh-----ccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHhH--HHHHHHHhh-c
Confidence 5 3455555554422 112457899999999865432 2334689999999999976542 233344444 3
Q ss_pred CcceEEEeccCchH----HHHHHH---------------------------------HHcCCCeEEEeCCcc----cccc
Q 013176 205 DRQTLYWSATWPRE----VETLAR---------------------------------QFLRNPYKVIIGSLE----LKAN 243 (448)
Q Consensus 205 ~~~~v~~SAT~~~~----~~~~~~---------------------------------~~~~~~~~~~~~~~~----~~~~ 243 (448)
..+.+++||||..+ +..+.. ..+ .+......... ...+
T Consensus 177 ~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l-~~~~lrr~k~~~~~~~~lp 255 (500)
T 1z63_A 177 SKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAII-SPFILRRTKYDKAIINDLP 255 (500)
T ss_dssp EEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHH-TTTEECCCTTCHHHHTTSC
T ss_pred cCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHH-hhHeeeecccccchhhcCC
Confidence 46779999998432 111111 111 11111100000 0001
Q ss_pred cCcceEEEEe--------------------------------------------------------cchhHHHHHHHHHH
Q 013176 244 QSINQVVEVV--------------------------------------------------------TEAEKYNRLIKLLK 267 (448)
Q Consensus 244 ~~~~~~~~~~--------------------------------------------------------~~~~~~~~l~~~l~ 267 (448)
......+... ....|...+.+++.
T Consensus 256 ~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~ 335 (500)
T 1z63_A 256 DKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIE 335 (500)
T ss_dssp SEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHHH
Confidence 1111111110 11234455556666
Q ss_pred hhh-cCCcEEEEecchhHHHHHHHHHHhC-CCCeEEEcCCCCHHHHHHHHHHHhcC-CCC-EEEEeccccCCCCCCCccE
Q 013176 268 EVM-DGSRILIFTETKKGCDQVTRQLRMD-GWPALSIHGDKNQSERDWVLAEFRSG-RSP-IMTATDVAARGLDVKDIKC 343 (448)
Q Consensus 268 ~~~-~~~k~lVf~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~-vLv~T~~~~~Gidi~~~~~ 343 (448)
+.. .+.++||||++...+..+++.|++. ++.+..+||+++.++|.++++.|+++ ..+ +|++|+++++|+|+|.+++
T Consensus 336 ~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~ 415 (500)
T 1z63_A 336 EALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANR 415 (500)
T ss_dssp HHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSE
T ss_pred HHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCE
Confidence 543 4679999999999999999999885 89999999999999999999999988 555 7889999999999999999
Q ss_pred EEEcCCCCChhhhhhcccccCCCCCCceEEEEecCCChHHHHHHHHHHHHhCC
Q 013176 344 VVNYDFPTSLEDYVHRIGRTGRAGARGTAFTFFTHSNAKFARDLIKILQEAGQ 396 (448)
Q Consensus 344 Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~ 396 (448)
||++|+|+++..|.|++||++|.|+.+.+.++..-......+.+.+.+.....
T Consensus 416 vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tiee~i~~~~~~K~~ 468 (500)
T 1z63_A 416 VIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRS 468 (500)
T ss_dssp EEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHHHHTHHHHTTCSS
T ss_pred EEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999998877444332222333444444443333
No 60
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=2.1e-35 Score=259.84 Aligned_cols=208 Identities=36% Similarity=0.569 Sum_probs=183.4
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEE
Q 013176 25 PIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVL 104 (448)
Q Consensus 25 p~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vl 104 (448)
|..+|+++++++.+.+.++.+||..|+++|.++++.+++++++++.+|||+|||++|+++++..+.... .+.+++
T Consensus 2 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~-----~~~~~l 76 (219)
T 1q0u_A 2 AETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPER-----AEVQAV 76 (219)
T ss_dssp --CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTS-----CSCCEE
T ss_pred CCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCc-----CCceEE
Confidence 457899999999999999999999999999999999999999999999999999999999998876432 256899
Q ss_pred EEcCcHHHHHHHHHHHHHhhcCC----CceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEE
Q 013176 105 VLAPTRELAVQIQEEALKFGSRA----GIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVL 180 (448)
Q Consensus 105 il~P~~~L~~q~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIv 180 (448)
|++||++|+.|+.+.++++.... ++.+..++|+.........+..+++|+|+||+++.+.+......+.+++++|+
T Consensus 77 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lVi 156 (219)
T 1q0u_A 77 ITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVV 156 (219)
T ss_dssp EECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEE
T ss_pred EEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEE
Confidence 99999999999999999987765 67888888887655554445567899999999999998887777888999999
Q ss_pred ecccccccCCCHHHHHHHHHHcCCCcceEEEeccCchHHHHHHHHHcCCCeEEEeCC
Q 013176 181 DEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGS 237 (448)
Q Consensus 181 DE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 237 (448)
||||++.++++...+..+...+++..+++++|||+++++..++..++.+|..+....
T Consensus 157 DEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~ 213 (219)
T 1q0u_A 157 DEADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVLE 213 (219)
T ss_dssp CSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC-
T ss_pred cCchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEeec
Confidence 999999999999999999999988899999999999999999999999998776543
No 61
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=6.1e-35 Score=258.75 Aligned_cols=211 Identities=30% Similarity=0.477 Sum_probs=179.6
Q ss_pred ecCCCCCcccccccCCCCHHHHHHHHHCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccC
Q 013176 18 EGHDVPRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQ 97 (448)
Q Consensus 18 ~~~~~~~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~ 97 (448)
.+...|.+..+|+++++++.+.+.++.+||..|+++|.++++.+.+++++++.+|||+|||++|+++++..+....
T Consensus 15 ~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~---- 90 (230)
T 2oxc_A 15 TGDVLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLEN---- 90 (230)
T ss_dssp ---------CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTS----
T ss_pred cCCCCCCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcC----
Confidence 3567778889999999999999999999999999999999999999999999999999999999999998875432
Q ss_pred CCCceEEEEcCcHHHHHHHHHHHHHhhcCC-CceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCcc
Q 013176 98 GEGPIVLVLAPTRELAVQIQEEALKFGSRA-GIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVT 176 (448)
Q Consensus 98 ~~~~~vlil~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~ 176 (448)
.+.+++|++|+++|+.|+.+.++++.... ++++..++|+.........+ .+++|+|+||++|.+.+......+.+++
T Consensus 91 -~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~ 168 (230)
T 2oxc_A 91 -LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELDYLNPGSIR 168 (230)
T ss_dssp -CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHTTSSCGGGCC
T ss_pred -CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhcCCcccccCC
Confidence 25789999999999999999999987654 78888888887665544443 5789999999999999887777788899
Q ss_pred EEEEecccccccCC-CHHHHHHHHHHcCCCcceEEEeccCchHHHHHHHHHcCCCeEEE
Q 013176 177 YLVLDEADRMLDMG-FEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVI 234 (448)
Q Consensus 177 ~iIvDE~h~~~~~~-~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~ 234 (448)
++|+||||++.+++ |...+..++..+++..|++++|||+++.+..++..++.+|..+.
T Consensus 169 ~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~ 227 (230)
T 2oxc_A 169 LFILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVR 227 (230)
T ss_dssp EEEESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEEC
T ss_pred EEEeCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEE
Confidence 99999999999987 99999999999988899999999999998888888888877653
No 62
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=8.2e-35 Score=257.23 Aligned_cols=211 Identities=31% Similarity=0.547 Sum_probs=181.5
Q ss_pred CCCCCcccccccCCCCHHHHHHHHHCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCC
Q 013176 20 HDVPRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGE 99 (448)
Q Consensus 20 ~~~~~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~ 99 (448)
...|.+..+|+++++++.+.+.+..+||..|+++|.++++.+.+++++++.+|||+|||++|+++++..+.... .
T Consensus 7 ~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~-----~ 81 (224)
T 1qde_A 7 TNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSV-----K 81 (224)
T ss_dssp BSCCCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTC-----C
T ss_pred cccCcccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccC-----C
Confidence 45677889999999999999999999999999999999999999999999999999999999999998875532 2
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEE
Q 013176 100 GPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLV 179 (448)
Q Consensus 100 ~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iI 179 (448)
+++++|++|+++|+.|+.+.++++....++++..++|+.........+. .++|+|+||++|.+.+......+.+++++|
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iV 160 (224)
T 1qde_A 82 APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFI 160 (224)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CT-TCSEEEECHHHHHHHHHTTSSCCTTCCEEE
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCC-CCCEEEECHHHHHHHHHhCCcchhhCcEEE
Confidence 5689999999999999999999998888889988888876655544443 389999999999999888777888999999
Q ss_pred EecccccccCCCHHHHHHHHHHcCCCcceEEEeccCchHHHHHHHHHcCCCeEEEeC
Q 013176 180 LDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIG 236 (448)
Q Consensus 180 vDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~ 236 (448)
+||||++.++++...+..+...+++..+++++|||+++++..++..++.+|..+.+.
T Consensus 161 iDEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~ 217 (224)
T 1qde_A 161 LDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVK 217 (224)
T ss_dssp EETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC--
T ss_pred EcChhHHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEec
Confidence 999999999999999999999998899999999999999999999999988776543
No 63
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.6e-35 Score=262.43 Aligned_cols=229 Identities=34% Similarity=0.574 Sum_probs=194.5
Q ss_pred HHHHHHhcCCeEEecCCCCCcccccccC----CCCHHHHHHHHHCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHH
Q 013176 5 EVKMYRARREITVEGHDVPRPIRIFQEA----NFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLS 80 (448)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~----~l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~ 80 (448)
+++.|....++.+.|...|.|+.+|+++ ++++.+.+.+..+||..|+++|.++++.+++++++++.+|||+|||++
T Consensus 3 ~~~~~~~~~~i~~~~~~~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~ 82 (245)
T 3dkp_A 3 KINFLRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLA 82 (245)
T ss_dssp HHHHHHHHTTEEEESSSCCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHH
T ss_pred hHHHHHHhCceEecCCCCCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHH
Confidence 4678888999999999999999999997 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhH-HHHhcCCcEEEEccH
Q 013176 81 YLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQI-RDLRRGVEIVIATPG 159 (448)
Q Consensus 81 ~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~iiv~T~~ 159 (448)
|+++++..+.... ..+.+++|++||++|+.|+.+.++++....++++..++++....... .....+++|+|+||+
T Consensus 83 ~~l~~l~~l~~~~----~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~ 158 (245)
T 3dkp_A 83 FSIPILMQLKQPA----NKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPN 158 (245)
T ss_dssp HHHHHHHHHCSCC----SSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHH
T ss_pred HHHHHHHHHhhcc----cCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHH
Confidence 9999998876432 23668999999999999999999999887788877766544322221 122346899999999
Q ss_pred HHHHHHHcc--ccCCCCccEEEEeccccccc---CCCHHHHHHHHHHcC-CCcceEEEeccCchHHHHHHHHHcCCCeEE
Q 013176 160 RLIDMLEAQ--HTNLRRVTYLVLDEADRMLD---MGFEPQIRKIVTQIR-PDRQTLYWSATWPREVETLARQFLRNPYKV 233 (448)
Q Consensus 160 ~l~~~~~~~--~~~~~~~~~iIvDE~h~~~~---~~~~~~~~~~~~~~~-~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~ 233 (448)
+|.+.+... ...+.+++++|+||||++.+ .++...+..++..+. +..++++||||+++++..++..++.+|..+
T Consensus 159 ~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i 238 (245)
T 3dkp_A 159 RLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISV 238 (245)
T ss_dssp HHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEE
T ss_pred HHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEE
Confidence 999988776 35678899999999999987 457778888776653 577999999999999999999999999887
Q ss_pred EeCC
Q 013176 234 IIGS 237 (448)
Q Consensus 234 ~~~~ 237 (448)
.+..
T Consensus 239 ~~~~ 242 (245)
T 3dkp_A 239 SIGA 242 (245)
T ss_dssp EECC
T ss_pred EeCC
Confidence 7654
No 64
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=2.3e-34 Score=256.33 Aligned_cols=226 Identities=32% Similarity=0.481 Sum_probs=191.1
Q ss_pred HHHHHHHHhcCCeEEecCCCCCcccccccCCCCHHHHHHHHHCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHH
Q 013176 3 ETEVKMYRARREITVEGHDVPRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYL 82 (448)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~ 82 (448)
+++++.+..+-. ...+.+..+|+++++++.+.+.++.+||..|+++|.++++.++.++++++.+|||+|||++|+
T Consensus 6 ~~~~~~~~~~~~-----~~~~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~ 80 (236)
T 2pl3_A 6 RESISRLMQNYE-----KINVNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFL 80 (236)
T ss_dssp HHHHHHHHHTTT-----TCCGGGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred HhHHHHHHhccc-----cCCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHH
Confidence 445555555433 233567889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHH
Q 013176 83 LPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLI 162 (448)
Q Consensus 83 l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~ 162 (448)
++++..+..... ....+++++|++|+++|+.|+.+.++++....++++..++|+.........+ .+++|+|+||++|.
T Consensus 81 ~~~l~~l~~~~~-~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~ 158 (236)
T 2pl3_A 81 VPVLEALYRLQW-TSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLL 158 (236)
T ss_dssp HHHHHHHHHTTC-CGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHH
T ss_pred HHHHHHHHhhcc-cccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHH
Confidence 999988755321 1123678999999999999999999999887788999999988776555544 57899999999999
Q ss_pred HHHHcc-ccCCCCccEEEEecccccccCCCHHHHHHHHHHcCCCcceEEEeccCchHHHHHHHHHcCCCeEEEe
Q 013176 163 DMLEAQ-HTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVII 235 (448)
Q Consensus 163 ~~~~~~-~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~ 235 (448)
+.+... ...+.+++++|+||||++.++++...+..++..+++..+++++|||+++.+..++..++.+|..+.+
T Consensus 159 ~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~ 232 (236)
T 2pl3_A 159 QHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWV 232 (236)
T ss_dssp HHHHHCSSCCCTTCCEEEETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEEC
T ss_pred HHHHhcCCcccccccEEEEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEe
Confidence 887654 4567889999999999999999999999999999889999999999999999999999988877654
No 65
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=2.7e-34 Score=263.87 Aligned_cols=217 Identities=26% Similarity=0.424 Sum_probs=187.4
Q ss_pred cCCeEEecCCCCCc---ccccccCCCCHHHHHHHHHCCCCCCcHHHHhHHHHhhcC--CcEEEEcCCCChHHHHHHHHHH
Q 013176 12 RREITVEGHDVPRP---IRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKG--RDLIGIAETGSGKTLSYLLPAF 86 (448)
Q Consensus 12 ~~~~~~~~~~~~~p---~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~~~--~~~lv~~~tGsGKT~~~~l~~l 86 (448)
..++.+.+.+.+.| ..+|+++++++.+.+.+..+||..|+++|.++++.++.+ +++++++|||||||++|++|++
T Consensus 74 ~~~v~v~~~~~~~p~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l 153 (300)
T 3fmo_B 74 TNQVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAML 153 (300)
T ss_dssp CSCEEEECSSTTCCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHH
T ss_pred cccceeccCCCCCCcCCcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHH
Confidence 34566777776665 578999999999999999999999999999999999987 8999999999999999999999
Q ss_pred HHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCC-CceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHH
Q 013176 87 VHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRA-GIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDML 165 (448)
Q Consensus 87 ~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~ 165 (448)
..+.... .++++||++||++|+.|+.+.++.+.... ++.+....++....... ...++|+|+||++|++++
T Consensus 154 ~~l~~~~-----~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l 225 (300)
T 3fmo_B 154 SQVEPAN-----KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWC 225 (300)
T ss_dssp HHCCTTS-----CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHH
T ss_pred HhhhccC-----CCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh---cCCCCEEEECHHHHHHHH
Confidence 9876542 35689999999999999999999988754 57788887776543322 456899999999999998
Q ss_pred Hc-cccCCCCccEEEEeccccccc-CCCHHHHHHHHHHcCCCcceEEEeccCchHHHHHHHHHcCCCeEEEeC
Q 013176 166 EA-QHTNLRRVTYLVLDEADRMLD-MGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIG 236 (448)
Q Consensus 166 ~~-~~~~~~~~~~iIvDE~h~~~~-~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~ 236 (448)
.+ ....+.++++||+||||++.+ .++...+..+...+++..|++++|||+++.+..++..++.+|..+.+.
T Consensus 226 ~~~~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 226 SKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp TTTCCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEEC
T ss_pred HhcCCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEec
Confidence 65 455788999999999999997 678889999999998999999999999999999999999999877653
No 66
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=7.4e-34 Score=247.98 Aligned_cols=204 Identities=41% Similarity=0.683 Sum_probs=182.7
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEc
Q 013176 28 IFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLA 107 (448)
Q Consensus 28 ~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~ 107 (448)
+|+++++++.+.+.++.+||..|+|+|.++++.+.+++++++.+|||+|||++|+++++..+..... ...+++++|++
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~--~~~~~~~lil~ 79 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQE--RGRKPRALVLT 79 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCC--TTCCCSEEEEC
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccc--cCCCCcEEEEE
Confidence 6899999999999999999999999999999999999999999999999999999999988764321 22367899999
Q ss_pred CcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccc
Q 013176 108 PTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRML 187 (448)
Q Consensus 108 P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~ 187 (448)
|+++|+.|+.+.++++... +++..++++.........+..+++|+|+||+++.+.+......+.+++++|+||||++.
T Consensus 80 P~~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~ 157 (207)
T 2gxq_A 80 PTRELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEML 157 (207)
T ss_dssp SSHHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhh
Confidence 9999999999999998654 67788888888777777777889999999999999988877788899999999999999
Q ss_pred cCCCHHHHHHHHHHcCCCcceEEEeccCchHHHHHHHHHcCCCeEEEe
Q 013176 188 DMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVII 235 (448)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~ 235 (448)
+.++...+..++..+++..+++++|||+++.+..++..++.+|..+.+
T Consensus 158 ~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 158 SMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp HTTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred ccchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 999999999999988889999999999999999999999998876543
No 67
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=7.7e-34 Score=284.71 Aligned_cols=274 Identities=18% Similarity=0.145 Sum_probs=201.1
Q ss_pred HHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcC
Q 013176 58 WPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGG 137 (448)
Q Consensus 58 i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~ 137 (448)
....+++++++++||||||||+.++ ..+.. ....+|++||++|+.|+++.+++. ++.+..++|+
T Consensus 149 ~ar~l~rk~vlv~apTGSGKT~~al----~~l~~--------~~~gl~l~PtR~LA~Qi~~~l~~~----g~~v~lltG~ 212 (677)
T 3rc3_A 149 DARAMQRKIIFHSGPTNSGKTYHAI----QKYFS--------AKSGVYCGPLKLLAHEIFEKSNAA----GVPCDLVTGE 212 (677)
T ss_dssp HHHTSCCEEEEEECCTTSSHHHHHH----HHHHH--------SSSEEEEESSHHHHHHHHHHHHHT----TCCEEEECSS
T ss_pred HHHhcCCCEEEEEcCCCCCHHHHHH----HHHHh--------cCCeEEEeCHHHHHHHHHHHHHhc----CCcEEEEECC
Confidence 3445678899999999999998433 33322 123599999999999999999885 6677788877
Q ss_pred CCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCCCHHHHHHHHHHcC-CCcceEEEeccCc
Q 013176 138 APKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIR-PDRQTLYWSATWP 216 (448)
Q Consensus 138 ~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~-~~~~~v~~SAT~~ 216 (448)
..... ..-....+++++|++.+. ....++++||||+|++.+.+++..+..++..++ ...+++++|||.
T Consensus 213 ~~~iv--~TpGr~~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~- 281 (677)
T 3rc3_A 213 ERVTV--QPNGKQASHVSCTVEMCS--------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAI- 281 (677)
T ss_dssp CEECC--STTCCCCSEEEEEGGGCC--------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGGH-
T ss_pred eeEEe--cCCCcccceeEecHhHhh--------hcccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccchH-
Confidence 54410 000113678999975542 245679999999999999889999998888887 678899999994
Q ss_pred hHHHHHHHHHcCCCeEEEeCCcccccccCcceEEEEecchhHHHHHHHHHHhhhcCCcEEEEecchhHHHHHHHHHHhCC
Q 013176 217 REVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDG 296 (448)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~~ 296 (448)
+.+..+.... .....+...... ..... ... . +..+... ....+|||++++.++.+++.|++.+
T Consensus 282 ~~i~~l~~~~-~~~~~v~~~~r~------~~l~~--~~~--~----l~~l~~~--~~g~iIf~~s~~~ie~la~~L~~~g 344 (677)
T 3rc3_A 282 DLVMELMYTT-GEEVEVRDYKRL------TPISV--LDH--A----LESLDNL--RPGDCIVCFSKNDIYSVSRQIEIRG 344 (677)
T ss_dssp HHHHHHHHHH-TCCEEEEECCCS------SCEEE--CSS--C----CCSGGGC--CTTEEEECSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhc-CCceEEEEeeec------chHHH--HHH--H----HHHHHhc--CCCCEEEEcCHHHHHHHHHHHHhcC
Confidence 3444444433 333333211100 00000 000 0 0011111 2345889999999999999999999
Q ss_pred CCeEEEcCCCCHHHHHHHHHHHhc--CCCCEEEEeccccCCCCCCCccEEEEcCC--------------CCChhhhhhcc
Q 013176 297 WPALSIHGDKNQSERDWVLAEFRS--GRSPIMTATDVAARGLDVKDIKCVVNYDF--------------PTSLEDYVHRI 360 (448)
Q Consensus 297 ~~~~~~~~~~~~~~r~~~~~~f~~--g~~~vLv~T~~~~~Gidi~~~~~Vi~~~~--------------p~s~~~~~Q~~ 360 (448)
+.+..+||++++++|..+++.|++ |..+|||||+++++|+|+ ++++||+++. |.+..+|+||+
T Consensus 345 ~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~ 423 (677)
T 3rc3_A 345 LESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIA 423 (677)
T ss_dssp CCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHH
T ss_pred CCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHh
Confidence 999999999999999999999998 889999999999999999 8999999998 77999999999
Q ss_pred cccCCCCCC---ceEEEEe
Q 013176 361 GRTGRAGAR---GTAFTFF 376 (448)
Q Consensus 361 GR~~R~g~~---g~~~~~~ 376 (448)
||+||.|.. |.|+.+.
T Consensus 424 GRAGR~g~~g~~G~v~~l~ 442 (677)
T 3rc3_A 424 GRAGRFSSRFKEGEVTTMN 442 (677)
T ss_dssp TTBTCTTSSCSSEEEEESS
T ss_pred cCCCCCCCCCCCEEEEEEe
Confidence 999999865 4444443
No 68
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=6.7e-34 Score=250.60 Aligned_cols=211 Identities=27% Similarity=0.493 Sum_probs=178.7
Q ss_pred cCCCCCcccccccCCCCHHHHHHHHHCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCC
Q 013176 19 GHDVPRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQG 98 (448)
Q Consensus 19 ~~~~~~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~ 98 (448)
+.-.+.+..+|+++++++.+.+.+..+||..|+++|.++++.+++++++++.+|||+|||++|+++++..+....
T Consensus 6 ~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~----- 80 (220)
T 1t6n_A 6 GSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVT----- 80 (220)
T ss_dssp --------CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCT-----
T ss_pred CCcccccCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccC-----
Confidence 333444556799999999999999999999999999999999999999999999999999999999998865431
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHhhcCC-CceEEEEEcCCCchHhHHHHhc-CCcEEEEccHHHHHHHHccccCCCCcc
Q 013176 99 EGPIVLVLAPTRELAVQIQEEALKFGSRA-GIRSTCIYGGAPKGPQIRDLRR-GVEIVIATPGRLIDMLEAQHTNLRRVT 176 (448)
Q Consensus 99 ~~~~vlil~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~ 176 (448)
.+.+++|++|+++|+.|+.+.++++.... ++++..++|+.........+.. .++|+|+||+++...+......+.+++
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 160 (220)
T 1t6n_A 81 GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIK 160 (220)
T ss_dssp TCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCC
T ss_pred CCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCC
Confidence 24589999999999999999999987765 7888888888876666555554 579999999999999888777888999
Q ss_pred EEEEeccccccc-CCCHHHHHHHHHHcCCCcceEEEeccCchHHHHHHHHHcCCCeEEE
Q 013176 177 YLVLDEADRMLD-MGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYKVI 234 (448)
Q Consensus 177 ~iIvDE~h~~~~-~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~ 234 (448)
++|+||||++.+ .++...+..++..+++..+++++|||+++.+..++..++.+|..+.
T Consensus 161 ~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 161 HFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp EEEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred EEEEcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 999999999987 3677888888888888899999999999999999999998887653
No 69
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=9.8e-34 Score=255.55 Aligned_cols=205 Identities=36% Similarity=0.550 Sum_probs=179.1
Q ss_pred cccccCC--CCHHHHHHHHHCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEE
Q 013176 27 RIFQEAN--FPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVL 104 (448)
Q Consensus 27 ~~~~~~~--l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vl 104 (448)
.+|++++ +++.+.+.++.+||..|+++|.++++.++.++++++++|||+|||++|+++++..+...... ...+.+++
T Consensus 52 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~-~~~~~~~l 130 (262)
T 3ly5_A 52 TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFM-PRNGTGVL 130 (262)
T ss_dssp GCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCC-GGGCCCEE
T ss_pred CChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhcccc-ccCCceEE
Confidence 4566665 99999999999999999999999999999999999999999999999999999987653221 12367899
Q ss_pred EEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccc-cCCCCccEEEEecc
Q 013176 105 VLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQH-TNLRRVTYLVLDEA 183 (448)
Q Consensus 105 il~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~-~~~~~~~~iIvDE~ 183 (448)
|++||++|+.|+.+.++++....+..+..++|+.........+..+++|+|+||+++.+.+.... ..+.++++||+|||
T Consensus 131 il~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEa 210 (262)
T 3ly5_A 131 ILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEA 210 (262)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSH
T ss_pred EEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcCh
Confidence 99999999999999999998888889999999988877777787889999999999998877653 56788999999999
Q ss_pred cccccCCCHHHHHHHHHHcCCCcceEEEeccCchHHHHHHHHHcCCCeE
Q 013176 184 DRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQFLRNPYK 232 (448)
Q Consensus 184 h~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~ 232 (448)
|++.+++|...+..++..+++..|++++|||+++.+..++...+.++..
T Consensus 211 h~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~~ 259 (262)
T 3ly5_A 211 DRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPL 259 (262)
T ss_dssp HHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCCE
T ss_pred HHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCCe
Confidence 9999999999999999999999999999999999999999888776543
No 70
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=5.3e-32 Score=274.00 Aligned_cols=319 Identities=18% Similarity=0.204 Sum_probs=217.1
Q ss_pred CCcHHHHhHHHHhh---------cCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHH
Q 013176 49 EPTPIQAQGWPMAL---------KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEE 119 (448)
Q Consensus 49 ~~~~~Q~~~i~~~~---------~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~ 119 (448)
.|+|||.+++..+. .+.+.|+..+||+|||+.++..+...+...+. ..+...++||++|+ +|+.||.++
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~-~~p~~~~~LiV~P~-sll~qW~~E 132 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPD-CKPEIDKVIVVSPS-SLVRNWYNE 132 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTT-SSCSCSCEEEEECH-HHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCcc-ccCCCCcEEEEecH-HHHHHHHHH
Confidence 68999999998874 34578999999999999876666555443321 22234579999995 899999999
Q ss_pred HHHhhcCCCceEEEEEcCCCchH--hHHHHhc------CCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCCC
Q 013176 120 ALKFGSRAGIRSTCIYGGAPKGP--QIRDLRR------GVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGF 191 (448)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~------~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~ 191 (448)
+.++... .+.+..++++..... ....... ..+|+|+|++.+..... .+....+++||+||+|++.+..
T Consensus 133 ~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~--~l~~~~~~~vI~DEaH~ikn~~- 208 (644)
T 1z3i_X 133 VGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE--VLHKGKVGLVICDEGHRLKNSD- 208 (644)
T ss_dssp HHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT--TTTTSCCCEEEETTGGGCCTTC-
T ss_pred HHHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHH--HhhcCCccEEEEECceecCChh-
Confidence 9998754 456666666543321 1222211 47899999999865432 2334568999999999987654
Q ss_pred HHHHHHHHHHcCCCcceEEEeccCchHH----H---------------HHHHHHc-------------------------
Q 013176 192 EPQIRKIVTQIRPDRQTLYWSATWPREV----E---------------TLARQFL------------------------- 227 (448)
Q Consensus 192 ~~~~~~~~~~~~~~~~~v~~SAT~~~~~----~---------------~~~~~~~------------------------- 227 (448)
.... ..+..+ ...+.+++||||..+- . .+...+.
T Consensus 209 ~~~~-~al~~l-~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~ 286 (644)
T 1z3i_X 209 NQTY-LALNSM-NAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQE 286 (644)
T ss_dssp HHHH-HHHHHH-CCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHH
T ss_pred hHHH-HHHHhc-ccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHHH
Confidence 2233 333344 3457799999984320 0 0000000
Q ss_pred ----CCCeEEEeCCccc--ccccCcceEEEE-------------------------------------------------
Q 013176 228 ----RNPYKVIIGSLEL--KANQSINQVVEV------------------------------------------------- 252 (448)
Q Consensus 228 ----~~~~~~~~~~~~~--~~~~~~~~~~~~------------------------------------------------- 252 (448)
-.+.......... ..+......+..
T Consensus 287 L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~l~ 366 (644)
T 1z3i_X 287 LISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALI 366 (644)
T ss_dssp HHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHHH
T ss_pred HHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCHHHH
Confidence 0000000000000 000000000000
Q ss_pred ----------------------------ecchhHHHHHHHHHHhhh--cCCcEEEEecchhHHHHHHHHHHhCCCCeEEE
Q 013176 253 ----------------------------VTEAEKYNRLIKLLKEVM--DGSRILIFTETKKGCDQVTRQLRMDGWPALSI 302 (448)
Q Consensus 253 ----------------------------~~~~~~~~~l~~~l~~~~--~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~ 302 (448)
.....|...+..++.... .+.++||||+....+..+.+.|...++.+..+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l 446 (644)
T 1z3i_X 367 YEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRL 446 (644)
T ss_dssp HHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEE
Confidence 001233444444444432 46799999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHhcCCCC---EEEEeccccCCCCCCCccEEEEcCCCCChhhhhhcccccCCCCCCceEEEE
Q 013176 303 HGDKNQSERDWVLAEFRSGRSP---IMTATDVAARGLDVKDIKCVVNYDFPTSLEDYVHRIGRTGRAGARGTAFTF 375 (448)
Q Consensus 303 ~~~~~~~~r~~~~~~f~~g~~~---vLv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~ 375 (448)
||+++.++|.++++.|+++... +|++|++.++|+|++.+++||++|+||++..+.|++||++|.|+...+.++
T Consensus 447 ~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~ 522 (644)
T 1z3i_X 447 DGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIY 522 (644)
T ss_dssp CSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEE
T ss_pred eCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEE
Confidence 9999999999999999998654 888999999999999999999999999999999999999999998766443
No 71
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=100.00 E-value=7e-32 Score=263.12 Aligned_cols=322 Identities=20% Similarity=0.256 Sum_probs=237.6
Q ss_pred HCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013176 44 KLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (448)
Q Consensus 44 ~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~ 123 (448)
.+|+ .|++.|.-..-.+.+|+ +..+.||+|||+++.+|++..+.. +..+.|++|+..||.|-.+++..+
T Consensus 71 ~lg~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~--------G~~vhVvT~ndyLA~rdae~m~~l 139 (822)
T 3jux_A 71 TLGM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALI--------GKGVHLVTVNDYLARRDALWMGPV 139 (822)
T ss_dssp HTSC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTT--------SSCEEEEESSHHHHHHHHHHHHHH
T ss_pred HhCC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhc--------CCceEEEeccHHHHHhHHHHHHHH
Confidence 4788 89999988887777764 889999999999999999866544 556999999999999999999999
Q ss_pred hcCCCceEEEEEcC--------------------------------------------------CCchHhHHHHhcCCcE
Q 013176 124 GSRAGIRSTCIYGG--------------------------------------------------APKGPQIRDLRRGVEI 153 (448)
Q Consensus 124 ~~~~~~~~~~~~~~--------------------------------------------------~~~~~~~~~~~~~~~i 153 (448)
...+++++.++... .+..+ ++-.-.|||
T Consensus 140 ~~~Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~e--rr~aY~~DI 217 (822)
T 3jux_A 140 YLFLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEIT--RKEAYLCDV 217 (822)
T ss_dssp HHHTTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCC--HHHHHHSSE
T ss_pred HHHhCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHH--HHHHhcCCC
Confidence 99999999999872 11111 111224799
Q ss_pred EEEccHHH-HHHHHcc------ccCCCCccEEEEecccccccC-------------CCH---------------------
Q 013176 154 VIATPGRL-IDMLEAQ------HTNLRRVTYLVLDEADRMLDM-------------GFE--------------------- 192 (448)
Q Consensus 154 iv~T~~~l-~~~~~~~------~~~~~~~~~iIvDE~h~~~~~-------------~~~--------------------- 192 (448)
+++|...| ++++..+ ....+.+.+.||||+|.++-. ...
T Consensus 218 tYgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~v 297 (822)
T 3jux_A 218 TYGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTV 297 (822)
T ss_dssp EEEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEE
T ss_pred EEccCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEE
Confidence 99999887 3555432 123466899999999964300 000
Q ss_pred --------------------------------HHHHHHHHHc------CC------------------------------
Q 013176 193 --------------------------------PQIRKIVTQI------RP------------------------------ 204 (448)
Q Consensus 193 --------------------------------~~~~~~~~~~------~~------------------------------ 204 (448)
..+..+...+ ..
T Consensus 298 dek~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~G 377 (822)
T 3jux_A 298 DEKARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGG 377 (822)
T ss_dssp CCSSSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGG
T ss_pred EcccCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchH
Confidence 0000000000 00
Q ss_pred -------------------------------CcceEEEeccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceEEEEe
Q 013176 205 -------------------------------DRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVV 253 (448)
Q Consensus 205 -------------------------------~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (448)
..++.+||+|+......+...+ +-. .+.++........ ........
T Consensus 378 LHQaiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY-~l~-vv~IPtnkp~~R~-d~~d~vy~ 454 (822)
T 3jux_A 378 LHQAIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVY-GME-VVVIPTHKPMIRK-DHDDLVFR 454 (822)
T ss_dssp HHHHHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHS-CCC-EEECCCSSCCCCE-ECCCEEES
T ss_pred HHHHHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHh-CCe-EEEECCCCCccee-ecCcEEEe
Confidence 1278899999987766665544 333 2233322211111 12223456
Q ss_pred cchhHHHHHHHHHHhhh-cCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccc
Q 013176 254 TEAEKYNRLIKLLKEVM-DGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVA 332 (448)
Q Consensus 254 ~~~~~~~~l~~~l~~~~-~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~ 332 (448)
+...|...+.+.+.+.. .+.++||||+|++.++.+++.|++.++++.++|++....++..+.+.++.| .|+|||+++
T Consensus 455 t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmA 532 (822)
T 3jux_A 455 TQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMA 532 (822)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTT
T ss_pred cHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchh
Confidence 77889999998887653 578999999999999999999999999999999997666666666666655 699999999
Q ss_pred cCCCCCC--------CccEEEEcCCCCChhhhhhcccccCCCCCCceEEEEecCCChHH
Q 013176 333 ARGLDVK--------DIKCVVNYDFPTSLEDYVHRIGRTGRAGARGTAFTFFTHSNAKF 383 (448)
Q Consensus 333 ~~Gidi~--------~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 383 (448)
++|+|++ +..+||+++.|.+...|.||+||+||.|.+|.+++|++..|..+
T Consensus 533 gRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~l~ 591 (822)
T 3jux_A 533 GRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDDLL 591 (822)
T ss_dssp TTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSHHH
T ss_pred hCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHHHH
Confidence 9999998 56699999999999999999999999999999999999887543
No 72
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-32 Score=284.89 Aligned_cols=335 Identities=16% Similarity=0.236 Sum_probs=230.3
Q ss_pred CCcHHHHhHHHHhh----cCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhh
Q 013176 49 EPTPIQAQGWPMAL----KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (448)
Q Consensus 49 ~~~~~Q~~~i~~~~----~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~ 124 (448)
.|+|||.+++..+. .+.+.++..+||+|||+.++..+...+.... ....+||+|| .+|+.||.+++.++.
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~-----~~~~~LIV~P-~sll~qW~~E~~~~~ 309 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARR-----QNGPHIIVVP-LSTMPAWLDTFEKWA 309 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHS-----CCSCEEEECC-TTTHHHHHHHHHHHS
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcC-----CCCCEEEEEC-chHHHHHHHHHHHHC
Confidence 79999999998665 6789999999999999986665544432221 2456899999 678899999999986
Q ss_pred cCCCceEEEEEcCCCchHhHHHH------------hcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCCCH
Q 013176 125 SRAGIRSTCIYGGAPKGPQIRDL------------RRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFE 192 (448)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~ 192 (448)
. ++++...+|........... ...++|+|+|++.+...... +....+++||+||||++.+..
T Consensus 310 p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~--l~~~~w~~vIvDEaH~lkn~~-- 383 (800)
T 3mwy_W 310 P--DLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE--LGSIKWQFMAVDEAHRLKNAE-- 383 (800)
T ss_dssp T--TCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH--HHTSEEEEEEETTGGGGCCSS--
T ss_pred C--CceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH--HhcCCcceeehhhhhhhcCch--
Confidence 4 46677777765544333322 23578999999999664322 223358899999999986643
Q ss_pred HHHHHHHHHcCCCcceEEEeccCch----HHHHHHHHHcCC-----------------------------CeEEEeCCcc
Q 013176 193 PQIRKIVTQIRPDRQTLYWSATWPR----EVETLARQFLRN-----------------------------PYKVIIGSLE 239 (448)
Q Consensus 193 ~~~~~~~~~~~~~~~~v~~SAT~~~----~~~~~~~~~~~~-----------------------------~~~~~~~~~~ 239 (448)
......+..+ ...+.+++||||.. ++..++..+... +.........
T Consensus 384 s~~~~~l~~l-~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~d 462 (800)
T 3mwy_W 384 SSLYESLNSF-KVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKD 462 (800)
T ss_dssp SHHHHHHTTS-EEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGG
T ss_pred hHHHHHHHHh-hhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHh
Confidence 2333344444 45567899999832 222222221111 0000000000
Q ss_pred cc--cccCcceEEEE-----------------------------------------------------------------
Q 013176 240 LK--ANQSINQVVEV----------------------------------------------------------------- 252 (448)
Q Consensus 240 ~~--~~~~~~~~~~~----------------------------------------------------------------- 252 (448)
.. .+......+..
T Consensus 463 v~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~ 542 (800)
T 3mwy_W 463 VEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKM 542 (800)
T ss_dssp GTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----C
T ss_pred hhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccc
Confidence 00 00000000000
Q ss_pred ---------ecchhHHHHHHHHHHhhh-cCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCC
Q 013176 253 ---------VTEAEKYNRLIKLLKEVM-DGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGR 322 (448)
Q Consensus 253 ---------~~~~~~~~~l~~~l~~~~-~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 322 (448)
.....|+..+..++.... .+.++||||.....+..+.+.|...++++..++|+++..+|.++++.|+++.
T Consensus 543 ~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~ 622 (800)
T 3mwy_W 543 TRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPD 622 (800)
T ss_dssp CSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTT
T ss_pred cHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCC
Confidence 001335555666666654 3679999999999999999999999999999999999999999999999865
Q ss_pred C---CEEEEeccccCCCCCCCccEEEEcCCCCChhhhhhcccccCCCCCCceEEEEecCCChHHHHHHHHHHHHhCC
Q 013176 323 S---PIMTATDVAARGLDVKDIKCVVNYDFPTSLEDYVHRIGRTGRAGARGTAFTFFTHSNAKFARDLIKILQEAGQ 396 (448)
Q Consensus 323 ~---~vLv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~ 396 (448)
. .+|++|.++++|+|++.+++||++|+||++..+.|++||+.|.|+...+.++..-.....-+.+.+.......
T Consensus 623 ~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~~ 699 (800)
T 3mwy_W 623 SNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMI 699 (800)
T ss_dssp CSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHTT
T ss_pred CCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHHHHH
Confidence 4 4899999999999999999999999999999999999999999998777554433333334455555444433
No 73
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=100.00 E-value=6.2e-32 Score=281.88 Aligned_cols=323 Identities=13% Similarity=0.128 Sum_probs=212.3
Q ss_pred HHHHHHHHHCC-------CCCCcHHHHhHHHHhhc--------------CCcEEEEcCCCChHHHHHHHHHHHHhhcCCC
Q 013176 36 DYCLEVIAKLG-------FVEPTPIQAQGWPMALK--------------GRDLIGIAETGSGKTLSYLLPAFVHVSAQPR 94 (448)
Q Consensus 36 ~~l~~~~~~~~-------~~~~~~~Q~~~i~~~~~--------------~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~ 94 (448)
+.+.+.+..+- ...|||+|.+|++.++. +++.+++++||||||+++ ++++..+...
T Consensus 251 ~~ll~~l~~f~~~~~~~~~~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~-- 327 (1038)
T 2w00_A 251 HTLLNVLVNYSVFDSSQTLLVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATEL-- 327 (1038)
T ss_dssp HHHHHHHHHSEEECTTCCEEECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTC--
T ss_pred HHHHHHHHhheeeccccccccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhc--
Confidence 44555555532 12599999999999875 257999999999999997 5555544332
Q ss_pred ccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHHHHh-cCCcEEEEccHHHHHHHHccc--cC
Q 013176 95 LVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLR-RGVEIVIATPGRLIDMLEAQH--TN 171 (448)
Q Consensus 95 ~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iiv~T~~~l~~~~~~~~--~~ 171 (448)
+...++|||+|+++|+.|+.+.+..+.... +.++.+.......+. ..++|+|+||++|...+.... ..
T Consensus 328 ---~~~~rvLvlvpr~eL~~Q~~~~f~~f~~~~------v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~ 398 (1038)
T 2w00_A 328 ---DFIDKVFFVVDRKDLDYQTMKEYQRFSPDS------VNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPV 398 (1038)
T ss_dssp ---TTCCEEEEEECGGGCCHHHHHHHHTTSTTC------SSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGG
T ss_pred ---CCCceEEEEeCcHHHHHHHHHHHHHhcccc------cccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhc
Confidence 124689999999999999999999876431 223344444444453 468999999999988765432 23
Q ss_pred CCCccEEEEecccccccCCCHHHHHHHHHHcCCCcceEEEeccCchHHH----HHHHHHcCC-----------------C
Q 013176 172 LRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREVE----TLARQFLRN-----------------P 230 (448)
Q Consensus 172 ~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~----~~~~~~~~~-----------------~ 230 (448)
+..+.+||+||||++.. ...+..+...+ ++.++++|||||..... .....+++. |
T Consensus 399 ~~~~~lvIiDEAHrs~~---~~~~~~I~~~~-p~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p 474 (1038)
T 2w00_A 399 YNQQVVFIFDECHRSQF---GEAQKNLKKKF-KRYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLK 474 (1038)
T ss_dssp GGSCEEEEEESCCTTHH---HHHHHHHHHHC-SSEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCC
T ss_pred cccccEEEEEccchhcc---hHHHHHHHHhC-CcccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCC
Confidence 45678999999999653 33455666666 46789999999864321 011122222 2
Q ss_pred eEEEeCCccccc-----ccC------cceEEEEecchhHHHHHHHHH-H---hhh-------cCCcEEEEecchhHHHHH
Q 013176 231 YKVIIGSLELKA-----NQS------INQVVEVVTEAEKYNRLIKLL-K---EVM-------DGSRILIFTETKKGCDQV 288 (448)
Q Consensus 231 ~~~~~~~~~~~~-----~~~------~~~~~~~~~~~~~~~~l~~~l-~---~~~-------~~~k~lVf~~~~~~~~~l 288 (448)
..+......... ... .... .....+.+...+...+ . ... .+.++||||+++..|..+
T Consensus 475 ~~v~y~~v~~~~~~~~~e~d~~~~~~i~~~-~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~ 553 (1038)
T 2w00_A 475 FKVDYNDVRPQFKSLETETDEKKLSAAENQ-QAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAY 553 (1038)
T ss_dssp EEEEECCCCGGGHHHHTCCCHHHHHHTCST-TTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHH
T ss_pred eEEEEEeccchhhhccccccHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHH
Confidence 221111100000 000 0000 0001122233333322 2 111 245899999999999999
Q ss_pred HHHHHhCC------------CCeE-EEcCC----------C----------CH---------------------------
Q 013176 289 TRQLRMDG------------WPAL-SIHGD----------K----------NQ--------------------------- 308 (448)
Q Consensus 289 ~~~L~~~~------------~~~~-~~~~~----------~----------~~--------------------------- 308 (448)
++.|++.+ .++. ++|++ + +.
T Consensus 554 ~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~ 633 (1038)
T 2w00_A 554 YATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNG 633 (1038)
T ss_dssp HHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHH
T ss_pred HHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchh
Confidence 99997643 4554 44432 2 21
Q ss_pred --HHHHHHHHHHhcCCCCEEEEeccccCCCCCCCccEEEEcCCCCChhhhhhcccccCCCCCC----ceEEEEe
Q 013176 309 --SERDWVLAEFRSGRSPIMTATDVAARGLDVKDIKCVVNYDFPTSLEDYVHRIGRTGRAGAR----GTAFTFF 376 (448)
Q Consensus 309 --~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~----g~~~~~~ 376 (448)
.+|..++++|++|+++|||+|+++.+|+|+|.+ +++++|.|.+...|+|++||++|.+.. |.++.|+
T Consensus 634 ~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~ 706 (1038)
T 2w00_A 634 FQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFR 706 (1038)
T ss_dssp HHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESS
T ss_pred hhHHHHHHHHHHHcCCCeEEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEcc
Confidence 147789999999999999999999999999999 678899999999999999999998753 4444444
No 74
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.97 E-value=7.6e-28 Score=239.13 Aligned_cols=320 Identities=20% Similarity=0.234 Sum_probs=234.6
Q ss_pred HCCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013176 44 KLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (448)
Q Consensus 44 ~~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~ 123 (448)
.+|| .|+++|..+++.+++|+ +..+.||+|||++|.+|++..... +..++|++||+.||.|.++++..+
T Consensus 75 ~lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~--------G~qv~VvTPTreLA~Qdae~m~~l 143 (997)
T 2ipc_A 75 YLGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALT--------GKGVHVVTVNDYLARRDAEWMGPV 143 (997)
T ss_dssp HTCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTT--------CSCCEEEESSHHHHHHHHHHHHHH
T ss_pred HhCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHh--------CCCEEEEeCCHHHHHHHHHHHHHH
Confidence 3899 99999999999999997 889999999999999999654433 456999999999999999999999
Q ss_pred hcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHH-HHHHHccc------cCCC---CccEEEEeccccccc-CCC-
Q 013176 124 GSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRL-IDMLEAQH------TNLR---RVTYLVLDEADRMLD-MGF- 191 (448)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~~~~~~------~~~~---~~~~iIvDE~h~~~~-~~~- 191 (448)
...+++++.+++|+.+.. .+.....++|+|+||..| ++++.... ..++ ++.++|+||+|.++. .+.
T Consensus 144 ~~~lGLsv~~i~Gg~~~~--~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLiDeart 221 (997)
T 2ipc_A 144 YRGLGLSVGVIQHASTPA--ERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILIDEART 221 (997)
T ss_dssp HHTTTCCEEECCTTCCHH--HHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTTSSTTS
T ss_pred HHhcCCeEEEEeCCCCHH--HHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHHhCCCC
Confidence 999999999999987643 333445689999999999 78877653 3566 899999999998762 110
Q ss_pred --------------HHHHHHHHHHcCC-----------------------------------------------------
Q 013176 192 --------------EPQIRKIVTQIRP----------------------------------------------------- 204 (448)
Q Consensus 192 --------------~~~~~~~~~~~~~----------------------------------------------------- 204 (448)
...+..+...++.
T Consensus 222 PLIISgp~~~~~~lY~~~~~~i~~L~~~~~~~~~~~~~~~~dy~vdek~r~v~LTe~G~~~~E~~l~i~~Ly~~~n~~l~ 301 (997)
T 2ipc_A 222 PLIISGPAEKATDLYYKMAEIAKKLERGLPAEPGVRKEPTGDYTVEEKNRSVHLTLQGIAKAEKLLGIEGLFSPENMELA 301 (997)
T ss_dssp CEEEEESCSSCHHHHHHHHHHHHHSCCCCCCCSSSCCCSSCCCCCTTSCCCCCCCHHHHHHHHHHHSCHHHHTTTCHHHH
T ss_pred CeeeeCCCccchHHHHHHHHHHHHhhhccccccccccCCCCCeEEecCcceEEEchHHHHHHHHHcCCccccCchhHHHH
Confidence 0011111111110
Q ss_pred ----------------------------------------------------------------------------Ccce
Q 013176 205 ----------------------------------------------------------------------------DRQT 208 (448)
Q Consensus 205 ----------------------------------------------------------------------------~~~~ 208 (448)
..++
T Consensus 302 ~~i~~ALrA~~lf~rd~dYiV~dgeV~IVDe~TGR~m~grrwsdGLHQAiEAKEgv~I~~e~~TlAsIT~QnyFr~Y~kL 381 (997)
T 2ipc_A 302 HMLIQAIRAKELYHRDRDYIVQDGQVIIVDEFTGRLMPGRRYGEGLHQAIEAKEGVRIERENQTLATITYQNFFRLYEKR 381 (997)
T ss_dssp HHHHHHHHHHHSSCHHHHEEECSSCEEEEETTTTEECTTCCCGGGHHHHHHHHTTCCCCCSCEEEEEECHHHHHTTSSEE
T ss_pred HHHHHHHHHHHHHhcCCCeEEECCEEEEEECCCCeeCCCCcccHHHHHHHHHHhCCCCCCCceeeeeeeHHHHHHhChHh
Confidence 0156
Q ss_pred EEEeccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceEEEEecchhHHHHHHHHHHhh-hcCCcEEEEecchhHHHH
Q 013176 209 LYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKEV-MDGSRILIFTETKKGCDQ 287 (448)
Q Consensus 209 v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~k~lVf~~~~~~~~~ 287 (448)
.+||+|.......+...+ +-.+ +.++.......... ....+.+...|+..+.+.+.+. ..+.++||+|.+++..+.
T Consensus 382 sGMTGTA~tE~~Ef~~iY-~l~V-v~IPTn~p~~R~D~-~d~vy~t~~~K~~AIv~eI~~~~~~GqPVLVgT~SIe~SE~ 458 (997)
T 2ipc_A 382 AGMTGTAKTEEKEFQEIY-GMDV-VVVPTNRPVIRKDF-PDVVYRTEKGKFYAVVEEIAEKYERGQPVLVGTISIEKSER 458 (997)
T ss_dssp EEEESSCGGGHHHHHHHH-CCCE-EECCCSSCCCCEEE-EEEEESSHHHHHHHHHHHHHHHHHHTCCEEEECSSHHHHHH
T ss_pred eecCCCchHHHHHHHHHh-CCCE-EEcCCCCCcccccC-CCeEEcCHHHHHHHHHHHHHHHHHCCCCEEEEeCCHHHHHH
Confidence 788888876655554443 3333 33333322222222 2233456677888877666654 458899999999999999
Q ss_pred HHHHHH--------------------------------------------------------------------------
Q 013176 288 VTRQLR-------------------------------------------------------------------------- 293 (448)
Q Consensus 288 l~~~L~-------------------------------------------------------------------------- 293 (448)
+++.|+
T Consensus 459 LS~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (997)
T 2ipc_A 459 LSQMLKEPRLYLPRLEMRLELFKKASQKQQGPEWERLRKLLERPAQLKDEDLAPFEGLIPPKGNLRTAWEGLKRAVHTLA 538 (997)
T ss_dssp HHHHHHCGGGGHHHHHHHHHHHHHHHTTCCSHHHHHHHHHTSSSTTCSHHHHSGGGGGCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhccccchhhhhhhhhhhhhhhhccccchhhhhhhhhccccccccccccccccccccccccccccccchhhhhhH
Confidence 999998
Q ss_pred --hCCCCeEEEcCCCCHHHHHHHHHHHhcC-CCCEEEEeccccCCCCCCCc-------------------c---------
Q 013176 294 --MDGWPALSIHGDKNQSERDWVLAEFRSG-RSPIMTATDVAARGLDVKDI-------------------K--------- 342 (448)
Q Consensus 294 --~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~vLv~T~~~~~Gidi~~~-------------------~--------- 342 (448)
+.+++..++++.....+. +++.+ .| .-.|-|||+++++|.||.=- .
T Consensus 539 ~~~~gI~H~VLNAK~he~EA-eIIAq--AG~~GaVTIATNMAGRGTDIkLggn~e~~~~~~~~~~~~~~~~~~~~~~~~~ 615 (997)
T 2ipc_A 539 VLRQGIPHQVLNAKHHAREA-EIVAQ--AGRSKTVTIATNMAGRGTDIKLGGNPEYLAAALLEKEGFDRYEWKVELFIKK 615 (997)
T ss_dssp HHHHCCCCCEECSSSHHHHH-HHHHT--TTSTTCEEEECSSTTTTSCCCSSCCHHHHHHHTTSSSCSSTTHHHHHHHHHH
T ss_pred HHHcCCCeeeccccchHHHH-HHHHh--cCCCCeEEEEecccCCCcCeecCCCHHHHHHHHHHhhccccccccccccccc
Confidence 567788888876543332 33322 33 34599999999999998521 1
Q ss_pred ----------------------------------------------EEEEcCCCCChhhhhhcccccCCCCCCceEEEEe
Q 013176 343 ----------------------------------------------CVVNYDFPTSLEDYVHRIGRTGRAGARGTAFTFF 376 (448)
Q Consensus 343 ----------------------------------------------~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~ 376 (448)
+||-...+.|..--.|..||+||.|.+|.+.+|+
T Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~V~e~GGLhVIGTeRhESrRIDnQLRGRaGRQGDPGsSrF~L 695 (997)
T 2ipc_A 616 MVAGKEEEARALAQELGIREELLERIREIREECKQDEERVRALGGLFIIGTERHESRRIDNQLRGRAGRQGDPGGSRFYV 695 (997)
T ss_dssp HHHTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCEEESSCCSSHHHHHHHHHTSSCSSCCCEEEEEE
T ss_pred ccccchhhccccchhhhhhhhHHHHHHHhhhhhhhhhhHHHhcCCeEEEeccCCchHHHHHHHhcccccCCCCCCeEEEE
Confidence 7888888999999999999999999999998888
Q ss_pred cCCChH
Q 013176 377 THSNAK 382 (448)
Q Consensus 377 ~~~~~~ 382 (448)
+-.|.-
T Consensus 696 SLeDdL 701 (997)
T 2ipc_A 696 SFDDDL 701 (997)
T ss_dssp ESSSHH
T ss_pred ECChHH
Confidence 876543
No 75
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.96 E-value=3.2e-27 Score=238.74 Aligned_cols=174 Identities=20% Similarity=0.232 Sum_probs=133.7
Q ss_pred CcceEEEeccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceEEEEecchhHHHHHHHHHHhhh-cCCcEEEEecchh
Q 013176 205 DRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKEVM-DGSRILIFTETKK 283 (448)
Q Consensus 205 ~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~k~lVf~~~~~ 283 (448)
..+++++|||+++..... .. ........ ........+.......+...+...+.... .+.++||||+++.
T Consensus 380 ~~q~i~~SAT~~~~~~~~----~~--~~~~~~~r---~~~l~~p~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~ 450 (664)
T 1c4o_A 380 VSQVVFVSATPGPFELAH----SG--RVVEQIIR---PTGLLDPLVRVKPTENQILDLMEGIRERAARGERTLVTVLTVR 450 (664)
T ss_dssp CSEEEEEESSCCHHHHHH----CS--EEEEECSC---TTCCCCCEEEEECSTTHHHHHHHHHHHHHHTTCEEEEECSSHH
T ss_pred cCCEEEEecCCCHHHHHh----hh--Ceeeeeec---cCCCCCCeEEEecccchHHHHHHHHHHHHhcCCEEEEEECCHH
Confidence 567899999987643211 11 11111110 00011112223334455566665555443 5779999999999
Q ss_pred HHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCCCccEEEEcCC-----CCChhhhhh
Q 013176 284 GCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVKDIKCVVNYDF-----PTSLEDYVH 358 (448)
Q Consensus 284 ~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~Vi~~~~-----p~s~~~~~Q 358 (448)
.++.+++.|.+.++++..+|++++..+|.++++.|++|+.+|||||+++++|+|+|++++||+++. |.+..+|+|
T Consensus 451 ~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQ 530 (664)
T 1c4o_A 451 MAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQ 530 (664)
T ss_dssp HHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHH
T ss_pred HHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999997 889999999
Q ss_pred cccccCCCCCCceEEEEecCCChHHHHHHH
Q 013176 359 RIGRTGRAGARGTAFTFFTHSNAKFARDLI 388 (448)
Q Consensus 359 ~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~ 388 (448)
|+||+||. ..|.++++++..+..+.+.+.
T Consensus 531 r~GRagR~-~~G~~i~~~~~~~~~~~~~i~ 559 (664)
T 1c4o_A 531 TIGRAARN-ARGEVWLYADRVSEAMQRAIE 559 (664)
T ss_dssp HHGGGTTS-TTCEEEEECSSCCHHHHHHHH
T ss_pred HHCccCcC-CCCEEEEEEcCCCHHHHHHHH
Confidence 99999998 489999999888776554443
No 76
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.96 E-value=7.9e-28 Score=204.50 Aligned_cols=166 Identities=45% Similarity=0.727 Sum_probs=142.3
Q ss_pred cccCcceEEEEecchhHHHHHHHHHHhhhcCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcC
Q 013176 242 ANQSINQVVEVVTEAEKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSG 321 (448)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g 321 (448)
....+.+.+..+...+|...|.++++....+.++||||+++..+..+++.|+..++.+..+||+++..+|..+++.|++|
T Consensus 16 ~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g 95 (185)
T 2jgn_A 16 TSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSG 95 (185)
T ss_dssp CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHT
T ss_pred CCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcC
Confidence 44567888888888999999999998866678999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeccccCCCCCCCccEEEEcCCCCChhhhhhcccccCCCCCCceEEEEecCCChHHHHHHHHHHHHhCCCCcHH
Q 013176 322 RSPIMTATDVAARGLDVKDIKCVVNYDFPTSLEDYVHRIGRTGRAGARGTAFTFFTHSNAKFARDLIKILQEAGQIVSPA 401 (448)
Q Consensus 322 ~~~vLv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 401 (448)
+.+|||||+++++|+|+|++++||++|+|+++.+|+||+||++|.|+.|.+++++.+.+....+.+.+.+....+.+++.
T Consensus 96 ~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 175 (185)
T 2jgn_A 96 KSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSW 175 (185)
T ss_dssp SSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHHTTCCCCHH
T ss_pred CCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHhccCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhh
Q 013176 402 LSGLAR 407 (448)
Q Consensus 402 l~~~~~ 407 (448)
+.+++.
T Consensus 176 l~~~a~ 181 (185)
T 2jgn_A 176 LENMAY 181 (185)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 988764
No 77
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.95 E-value=1.6e-27 Score=203.36 Aligned_cols=178 Identities=38% Similarity=0.579 Sum_probs=147.1
Q ss_pred HcCCCeEEEeCCcccccccCcceEEEEecchhHHHHHHHHHHhhhcCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCC
Q 013176 226 FLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGD 305 (448)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~ 305 (448)
++.+|..+.+.... .....+.+.+.......|...|.+++.. .+.++||||+++..++.+++.|++.++.+..+||+
T Consensus 11 ~~~~p~~i~v~~~~-~~~~~i~q~~~~~~~~~K~~~L~~~l~~--~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~ 87 (191)
T 2p6n_A 11 VDLGTENLYFQSMG-AASLDVIQEVEYVKEEAKMVYLLECLQK--TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGG 87 (191)
T ss_dssp ------------------CCSEEEEEECCGGGHHHHHHHHHTT--SCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTT
T ss_pred ccCCCEEEEECCCC-CCCcCceEEEEEcChHHHHHHHHHHHHh--CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCC
Confidence 44555555544333 3445677888888888999999988876 35689999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCCCccEEEEcCCCCChhhhhhcccccCCCCCCceEEEEecCC-ChHHH
Q 013176 306 KNQSERDWVLAEFRSGRSPIMTATDVAARGLDVKDIKCVVNYDFPTSLEDYVHRIGRTGRAGARGTAFTFFTHS-NAKFA 384 (448)
Q Consensus 306 ~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~-~~~~~ 384 (448)
+++.+|..+++.|++|+.+|||||+++++|+|+|++++||++|+|+++.+|+||+||++|.|+.|.+++|+.+. +....
T Consensus 88 ~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~~~ 167 (191)
T 2p6n_A 88 KDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDESVL 167 (191)
T ss_dssp SCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHHHH
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999876 77888
Q ss_pred HHHHHHHHHhCCCCcHHHHhhh
Q 013176 385 RDLIKILQEAGQIVSPALSGLA 406 (448)
Q Consensus 385 ~~l~~~~~~~~~~~~~~l~~~~ 406 (448)
..+.+.+....+.+++.+..+.
T Consensus 168 ~~l~~~l~~~~~~~p~~l~~~~ 189 (191)
T 2p6n_A 168 MDLKALLLEAKQKVPPVLQVLH 189 (191)
T ss_dssp HHHHHHHHHTTCCCCHHHHSTT
T ss_pred HHHHHHHHHccCcCCHHHHhhc
Confidence 9999999999999999987764
No 78
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.95 E-value=1.3e-26 Score=234.13 Aligned_cols=174 Identities=20% Similarity=0.263 Sum_probs=134.8
Q ss_pred CCcceEEEeccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceEEEEecchhHHHHHHHHHHhhh-cCCcEEEEecch
Q 013176 204 PDRQTLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEVVTEAEKYNRLIKLLKEVM-DGSRILIFTETK 282 (448)
Q Consensus 204 ~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~k~lVf~~~~ 282 (448)
...|++++|||+++..... ............ ......+.......+...+...+.... .+.++||||+++
T Consensus 385 ~~~q~i~~SAT~~~~~~~~----~~~~~~~~~r~~-----~l~~p~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~ 455 (661)
T 2d7d_A 385 HMHNIVYVSATPGPYEIEH----TDEMVEQIIRPT-----GLLDPLIDVRPIEGQIDDLIGEIQARIERNERVLVTTLTK 455 (661)
T ss_dssp TCSEEEEECSSCCHHHHHH----CSSCEEECCCTT-----CCCCCEEEEECSTTHHHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred cCCCEEEEecCCChhHHHh----hhCeeeeeeccc-----CCCCCeEEEecccchHHHHHHHHHHHHhcCCeEEEEECCH
Confidence 3567899999987543221 111111111100 001111223344455566666565544 567999999999
Q ss_pred hHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCCCCccEEEEcCC-----CCChhhhh
Q 013176 283 KGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDVKDIKCVVNYDF-----PTSLEDYV 357 (448)
Q Consensus 283 ~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi~~~~~Vi~~~~-----p~s~~~~~ 357 (448)
..++.+++.|++.++++..+|++++..+|..+++.|++|+.+|||||+++++|+|+|++++||+++. |.+..+|+
T Consensus 456 ~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~i 535 (661)
T 2d7d_A 456 KMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLI 535 (661)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHH
T ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999997 89999999
Q ss_pred hcccccCCCCCCceEEEEecCCChHHHHHH
Q 013176 358 HRIGRTGRAGARGTAFTFFTHSNAKFARDL 387 (448)
Q Consensus 358 Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l 387 (448)
||+||+||. ..|.+++++++.+..+...+
T Consensus 536 Qr~GRagR~-~~G~~i~~~~~~~~~~~~~i 564 (661)
T 2d7d_A 536 QTIGRAARN-AEGRVIMYADKITKSMEIAI 564 (661)
T ss_dssp HHHHTTTTS-TTCEEEEECSSCCHHHHHHH
T ss_pred HHhCcccCC-CCCEEEEEEeCCCHHHHHHH
Confidence 999999998 78999999998877655443
No 79
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.94 E-value=7e-26 Score=188.81 Aligned_cols=148 Identities=39% Similarity=0.627 Sum_probs=137.4
Q ss_pred ccCcceEEEEecchhHHHHHHHHHHhhhcCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCC
Q 013176 243 NQSINQVVEVVTEAEKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGR 322 (448)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 322 (448)
...+.+.+.......|...|.+++... .++++||||+++..+..+++.|++.++.+..+||+++..+|..+++.|++|+
T Consensus 7 ~~~i~~~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~ 85 (163)
T 2hjv_A 7 TRNIEHAVIQVREENKFSLLKDVLMTE-NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGE 85 (163)
T ss_dssp CCCEEEEEEECCGGGHHHHHHHHHHHH-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred cccceEEEEECChHHHHHHHHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCC
Confidence 445777888888899999999988774 5668999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeccccCCCCCCCccEEEEcCCCCChhhhhhcccccCCCCCCceEEEEecCCChHHHHHHHHHH
Q 013176 323 SPIMTATDVAARGLDVKDIKCVVNYDFPTSLEDYVHRIGRTGRAGARGTAFTFFTHSNAKFARDLIKIL 391 (448)
Q Consensus 323 ~~vLv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~ 391 (448)
.+|||||+++++|+|+|++++||++++|+++.+|+||+||++|.|+.|.+++++.+.+...++.+.+.+
T Consensus 86 ~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~ 154 (163)
T 2hjv_A 86 YRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYI 154 (163)
T ss_dssp CSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHH
T ss_pred CeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999988888877665
No 80
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.94 E-value=3.8e-26 Score=190.97 Aligned_cols=153 Identities=38% Similarity=0.627 Sum_probs=131.7
Q ss_pred cceEEEEecchh-HHHHHHHHHHhhhcCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCC
Q 013176 246 INQVVEVVTEAE-KYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSP 324 (448)
Q Consensus 246 ~~~~~~~~~~~~-~~~~l~~~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 324 (448)
+.+.+......+ |...+.++++.. .++++||||++++.++.+++.|++.++.+..+|++++..+|..+++.|++|+.+
T Consensus 4 i~~~~~~~~~~~~K~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 82 (165)
T 1fuk_A 4 IKQFYVNVEEEEYKYECLTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSR 82 (165)
T ss_dssp CEEEEEEEESGGGHHHHHHHHHHHT-TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS
T ss_pred cEEEEEECCcchhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCE
Confidence 455555556555 999999988874 567899999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccccCCCCCCCccEEEEcCCCCChhhhhhcccccCCCCCCceEEEEecCCChHHHHHHHHHHHHhCCCCc
Q 013176 325 IMTATDVAARGLDVKDIKCVVNYDFPTSLEDYVHRIGRTGRAGARGTAFTFFTHSNAKFARDLIKILQEAGQIVS 399 (448)
Q Consensus 325 vLv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 399 (448)
|||||+++++|+|+|++++||++|+|+++.+|.||+||++|.|+.|.+++++.+.+......+.+.+....+.++
T Consensus 83 vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (165)
T 1fuk_A 83 ILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELP 157 (165)
T ss_dssp EEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCEECC
T ss_pred EEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccCccccC
Confidence 999999999999999999999999999999999999999999999999999999998888888776654444333
No 81
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.93 E-value=5.7e-26 Score=190.83 Aligned_cols=158 Identities=27% Similarity=0.495 Sum_probs=136.5
Q ss_pred cCcceEEEEecchhHHHHHHHHHHhhhcCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCC
Q 013176 244 QSINQVVEVVTEAEKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRS 323 (448)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 323 (448)
..+.+.+......+|...|.++++.. .+.++||||+++..++.+++.|.+.++.+..+||++++.+|..+++.|++|+.
T Consensus 4 ~~i~q~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~ 82 (172)
T 1t5i_A 4 HGLQQYYVKLKDNEKNRKLFDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQR 82 (172)
T ss_dssp -CCEEEEEECCGGGHHHHHHHHHHHS-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred CCeEEEEEECChHHHHHHHHHHHHhC-CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCC
Confidence 35667777788889999999988864 56789999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeccccCCCCCCCccEEEEcCCCCChhhhhhcccccCCCCCCceEEEEecCC-ChHHHHHHHHHHHHhCCCCcHHH
Q 013176 324 PIMTATDVAARGLDVKDIKCVVNYDFPTSLEDYVHRIGRTGRAGARGTAFTFFTHS-NAKFARDLIKILQEAGQIVSPAL 402 (448)
Q Consensus 324 ~vLv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~l 402 (448)
+|||||+++++|+|+|++++||++|+|+++.+|+||+||++|.|+.|.+++++.+. +....+.+.+.+......++..+
T Consensus 83 ~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 162 (172)
T 1t5i_A 83 RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEI 162 (172)
T ss_dssp SEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC---
T ss_pred cEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhhCChhh
Confidence 99999999999999999999999999999999999999999999999999999875 44556666665544444444433
No 82
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.93 E-value=2.6e-25 Score=187.75 Aligned_cols=148 Identities=29% Similarity=0.544 Sum_probs=129.3
Q ss_pred cCcceEEEEecchh-HHHHHHHHHHhhhcCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCC
Q 013176 244 QSINQVVEVVTEAE-KYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGR 322 (448)
Q Consensus 244 ~~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 322 (448)
..+.+.+..+.... |...|.++++.. ..+++||||+++..+..+++.|.+.++.+..+||+++..+|..+++.|++|+
T Consensus 6 ~~i~q~~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~ 84 (175)
T 2rb4_A 6 NNIRQYYVLCEHRKDKYQALCNIYGSI-TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGK 84 (175)
T ss_dssp CCEEEEEEECSSHHHHHHHHHHHHTTS-CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTS
T ss_pred CCceEEEEEcCChHhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCC
Confidence 45666666666554 888888888764 4679999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeccccCCCCCCCccEEEEcCCC------CChhhhhhcccccCCCCCCceEEEEecCCChHHHHHHHHHHH
Q 013176 323 SPIMTATDVAARGLDVKDIKCVVNYDFP------TSLEDYVHRIGRTGRAGARGTAFTFFTHSNAKFARDLIKILQ 392 (448)
Q Consensus 323 ~~vLv~T~~~~~Gidi~~~~~Vi~~~~p------~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~ 392 (448)
.+|||||+++++|+|+|++++||++|+| .+..+|+||+||+||.|+.|.+++++.+.+...+..+.+.+.
T Consensus 85 ~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~ 160 (175)
T 2rb4_A 85 EKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFN 160 (175)
T ss_dssp CSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHT
T ss_pred CeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhc
Confidence 9999999999999999999999999999 899999999999999999999999999988877777766653
No 83
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.93 E-value=1.4e-24 Score=188.84 Aligned_cols=146 Identities=34% Similarity=0.543 Sum_probs=131.1
Q ss_pred cceEEEEecchhHHHHHHHHHHhhhcCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCE
Q 013176 246 INQVVEVVTEAEKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPI 325 (448)
Q Consensus 246 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~v 325 (448)
+.+.........|...+.+++... .++++||||+++..++.+++.|.+.++.+..+||+++..+|..+++.|++|+.+|
T Consensus 6 ~~~~~~~~~~~~k~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~v 84 (212)
T 3eaq_A 6 YEEEAVPAPVRGRLEVLSDLLYVA-SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRV 84 (212)
T ss_dssp BCCEEEECCTTSHHHHHHHHHHHH-CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCE
T ss_pred eeeeEEeCCHHHHHHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeE
Confidence 344555567788999999988754 4679999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccccCCCCCCCccEEEEcCCCCChhhhhhcccccCCCCCCceEEEEecCCChHHHHHHHHHHH
Q 013176 326 MTATDVAARGLDVKDIKCVVNYDFPTSLEDYVHRIGRTGRAGARGTAFTFFTHSNAKFARDLIKILQ 392 (448)
Q Consensus 326 Lv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~ 392 (448)
||||+++++|+|+|++++||++++|+++.+|.||+||+||.|+.|.+++++++.+....+.+.+.+.
T Consensus 85 lvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~ 151 (212)
T 3eaq_A 85 LVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVG 151 (212)
T ss_dssp EEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHS
T ss_pred EEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999998888777766654
No 84
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.92 E-value=8.6e-25 Score=216.72 Aligned_cols=303 Identities=17% Similarity=0.218 Sum_probs=169.7
Q ss_pred HCCCCCCcHHHHhHHHH----hhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHH
Q 013176 44 KLGFVEPTPIQAQGWPM----ALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEE 119 (448)
Q Consensus 44 ~~~~~~~~~~Q~~~i~~----~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~ 119 (448)
-.|| +|||+|.+++.. +..++++++.+|||+|||++|++|++.. +.+++|++||++|+.|+.++
T Consensus 3 ~~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~-----------~~~~~~~~~t~~l~~q~~~~ 70 (540)
T 2vl7_A 3 VLKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL-----------KKKVLIFTRTHSQLDSIYKN 70 (540)
T ss_dssp -------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH-----------TCEEEEEESCHHHHHHHHHH
T ss_pred CCCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC-----------CCcEEEEcCCHHHHHHHHHH
Confidence 4578 899999998754 4577899999999999999999998765 56799999999999999988
Q ss_pred HHHhhcCCCceEEEEEcCCC--------c------------------------hHhHH---------------HHhcCCc
Q 013176 120 ALKFGSRAGIRSTCIYGGAP--------K------------------------GPQIR---------------DLRRGVE 152 (448)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~--------~------------------------~~~~~---------------~~~~~~~ 152 (448)
+..+ ++++..+.|... . .+.+. .....++
T Consensus 71 ~~~l----~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~ad 146 (540)
T 2vl7_A 71 AKLL----GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKD 146 (540)
T ss_dssp HGGG----TCCEEEC---------------------------------------------------------CTTGGGCS
T ss_pred HHhc----CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCC
Confidence 8774 333333332210 0 00011 1124579
Q ss_pred EEEEccHHHHHHHHcccc-------CCCCccEEEEecccccccCC-------CHHHHHH----HH---------------
Q 013176 153 IVIATPGRLIDMLEAQHT-------NLRRVTYLVLDEADRMLDMG-------FEPQIRK----IV--------------- 199 (448)
Q Consensus 153 iiv~T~~~l~~~~~~~~~-------~~~~~~~iIvDE~h~~~~~~-------~~~~~~~----~~--------------- 199 (448)
|||+|++.|++....... .+...+++||||||++.+.. ....+.. +.
T Consensus 147 iVV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~~a~~~~s~~ls~~~l~~~~~~l~~~~~~~~~~~~~l~~ 226 (540)
T 2vl7_A 147 VIAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLLEADKWFTRKISRKMLERALKEIEIVERLNRIDAKKVKD 226 (540)
T ss_dssp EEEEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGGGGGGGGCEEECHHHHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred EEEEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHHHHHHHhccccCHHHHHHHHHHHHHHHhcchhhHHHHHH
Confidence 999999999875443322 24567899999999874310 0000000 00
Q ss_pred ------HHc--------------------------------------------------------------------CCC
Q 013176 200 ------TQI--------------------------------------------------------------------RPD 205 (448)
Q Consensus 200 ------~~~--------------------------------------------------------------------~~~ 205 (448)
..+ .|.
T Consensus 227 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~P~ 306 (540)
T 2vl7_A 227 YINLLIDYMSKLIKDGRCHELSLMPLPDRETNGELIVVTRAYLNIDEGPVKKSSLKSLLKFVEMKGDLYNCNGSLVKVPS 306 (540)
T ss_dssp HHHHHHHHHHTSCCSSSEEEESCCCCCCHHHHHHHHHHHHHHHTTCCSSSCCCHHHHHHHHHHSCCEEEEETTEEEEECS
T ss_pred HHHHHHHHHHHhhccccccchhhcccccHHHHHHHHHHHHHHHHhhccCccHHHHHHHHHHHHhCCCEEEECCeEEEehH
Confidence 000 000
Q ss_pred ---------cc----eEEEeccCchHHHHHHHHHcCCCeEEEeCCcccccccCcceEEEE----ecchh---HHHHHHHH
Q 013176 206 ---------RQ----TLYWSATWPREVETLARQFLRNPYKVIIGSLELKANQSINQVVEV----VTEAE---KYNRLIKL 265 (448)
Q Consensus 206 ---------~~----~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~---~~~~l~~~ 265 (448)
.. .|++|||+.+... +........... ......... .+... ....+.+.
T Consensus 307 ~~~~~l~~~~~~~~~~IltSATL~p~~~------~~~~f~~~~~~~-----~g~~~~~~~~~l~s~f~~r~~~~~~~~~~ 375 (540)
T 2vl7_A 307 DVNQLIEDALNVKTFKVLMSGTLPESLT------LTNSYKIVVNES-----YGRGEYYYCPNVTSELRKRNSNIPIYSIL 375 (540)
T ss_dssp CHHHHHHHHTCCSSCEEEEESSCCTTCC------CTTEEEEECCCC------CCCEEEECTTCCCCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHhcCccCCeEEEcccCCCCcc------cchhcCCchhhe-----ecCCcceeccccCCCcccccCHHHHHHHH
Confidence 01 2556666554100 000000000000 000000000 00111 11344444
Q ss_pred HHhhh--cCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEE--EeccccCCCCCCC-
Q 013176 266 LKEVM--DGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMT--ATDVAARGLDVKD- 340 (448)
Q Consensus 266 l~~~~--~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv--~T~~~~~Gidi~~- 340 (448)
+.+.. ..+++|||++|...++.+++.|+. .+ ...++.. .++.++++.|+++. .||+ +|..+++|||+|+
T Consensus 376 l~~~~~~~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~ 449 (540)
T 2vl7_A 376 LKRIYENSSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREK 449 (540)
T ss_dssp HHHHHHTCSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC-------------
T ss_pred HHHHHHhCCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCC
Confidence 44433 356899999999999999988865 23 3455554 46888999998854 6777 7899999999997
Q ss_pred ---ccEEEEcCCCC-Ch-----------------------------hhhhhcccccCCCCCCceEEEEecCC
Q 013176 341 ---IKCVVNYDFPT-SL-----------------------------EDYVHRIGRTGRAGARGTAFTFFTHS 379 (448)
Q Consensus 341 ---~~~Vi~~~~p~-s~-----------------------------~~~~Q~~GR~~R~g~~g~~~~~~~~~ 379 (448)
+++||++++|. ++ ..+.|.+||+.|...+..++++++..
T Consensus 450 ~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD~R 521 (540)
T 2vl7_A 450 ENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCDSR 521 (540)
T ss_dssp --CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEESGG
T ss_pred cccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEEccc
Confidence 89999999884 12 23669999999986666666676643
No 85
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.92 E-value=6.6e-25 Score=192.46 Aligned_cols=165 Identities=24% Similarity=0.237 Sum_probs=120.2
Q ss_pred CCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHH-HHHHHHHhhc
Q 013176 47 FVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQ-IQEEALKFGS 125 (448)
Q Consensus 47 ~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q-~~~~~~~~~~ 125 (448)
...|+++|.++++.+.+++++++.+|||+|||++++++++..+..... ...+.+++|++|+++|+.| +.+.+..+..
T Consensus 31 ~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~--~~~~~~~lil~p~~~L~~q~~~~~~~~~~~ 108 (216)
T 3b6e_A 31 ELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKK--ASEPGKVIVLVNKVLLVEQLFRKEFQPFLK 108 (216)
T ss_dssp CCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHH--TTCCCCEEEEESSHHHHHHHHHHTHHHHHT
T ss_pred CCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhccc--ccCCCcEEEEECHHHHHHHHHHHHHHHHhc
Confidence 348999999999999999999999999999999999998877654211 1125679999999999999 7788888866
Q ss_pred CCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccc------cCCCCccEEEEecccccccCCCHHHH-HHH
Q 013176 126 RAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQH------TNLRRVTYLVLDEADRMLDMGFEPQI-RKI 198 (448)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~------~~~~~~~~iIvDE~h~~~~~~~~~~~-~~~ 198 (448)
. ++++..+.++.............++|+|+||+.|...+.... ..+.++++||+||||++...++...+ ..+
T Consensus 109 ~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~ 187 (216)
T 3b6e_A 109 K-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHY 187 (216)
T ss_dssp T-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHHHH
T ss_pred c-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHHHH
Confidence 5 678888888776655555555678999999999998887643 45678899999999999876544433 333
Q ss_pred HHHc-------------CCCcceEEEecc
Q 013176 199 VTQI-------------RPDRQTLYWSAT 214 (448)
Q Consensus 199 ~~~~-------------~~~~~~v~~SAT 214 (448)
+... .+..++++||||
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 188 LMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHhcccccccccccCCCCcceEEEeecC
Confidence 2211 156789999998
No 86
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.92 E-value=6.2e-24 Score=193.16 Aligned_cols=144 Identities=34% Similarity=0.543 Sum_probs=126.5
Q ss_pred cceEEEEecchhHHHHHHHHHHhhhcCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCE
Q 013176 246 INQVVEVVTEAEKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPI 325 (448)
Q Consensus 246 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~v 325 (448)
+.++........|...+.++++... ++++||||++++.++.+++.|.+.++.+..+||++++.+|..+++.|++|+.+|
T Consensus 3 v~~~~i~~~~~~K~~~L~~ll~~~~-~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~v 81 (300)
T 3i32_A 3 YEEEAVPAPVRGRLEVLSDLLYVAS-PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRV 81 (300)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHC-CSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCE
T ss_pred eEEEEEECCHHHHHHHHHHHHHhcC-CCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceE
Confidence 4556666778889999999887754 779999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccccCCCCCCCccEEEEcCCCCChhhhhhcccccCCCCCCceEEEEecCCChHHHHHHHHH
Q 013176 326 MTATDVAARGLDVKDIKCVVNYDFPTSLEDYVHRIGRTGRAGARGTAFTFFTHSNAKFARDLIKI 390 (448)
Q Consensus 326 Lv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~ 390 (448)
||||+++++|+|+|++++||++++|++..+|+||+||+||.|+.|.+++|+++.+....+.+.+.
T Consensus 82 LVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~ 146 (300)
T 3i32_A 82 LVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERA 146 (300)
T ss_dssp EEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHH
T ss_pred EEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998886666554443
No 87
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.91 E-value=2.7e-22 Score=199.61 Aligned_cols=314 Identities=17% Similarity=0.136 Sum_probs=201.4
Q ss_pred CCCCCcHHHHhHHHHh----hcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHH
Q 013176 46 GFVEPTPIQAQGWPMA----LKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEAL 121 (448)
Q Consensus 46 ~~~~~~~~Q~~~i~~~----~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~ 121 (448)
|| ++||+|.+++..+ ..++++++.+|||+|||++|++|++.. +.+++|++||++|+.|+.+++.
T Consensus 1 ~~-~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~-----------~~~v~i~~pt~~l~~q~~~~~~ 68 (551)
T 3crv_A 1 MV-KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV-----------KPKVLFVVRTHNEFYPIYRDLT 68 (551)
T ss_dssp CC-SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH-----------CSEEEEEESSGGGHHHHHHHHT
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC-----------CCeEEEEcCCHHHHHHHHHHHH
Confidence 46 7999999987654 467899999999999999999999983 6689999999999999999999
Q ss_pred HhhcCCCceEEEEEcCCCc---------------------------------hHhH------------------HHHhcC
Q 013176 122 KFGSRAGIRSTCIYGGAPK---------------------------------GPQI------------------RDLRRG 150 (448)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~---------------------------------~~~~------------------~~~~~~ 150 (448)
.+....++++..+.|.... .... +.....
T Consensus 69 ~l~~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~ 148 (551)
T 3crv_A 69 KIREKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYK 148 (551)
T ss_dssp TCCCSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGG
T ss_pred HHhhhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhc
Confidence 9877667888877663210 0111 223356
Q ss_pred CcEEEEccHHHHHHHHccccCC-CCccEEEEecccccccCC---------------------------------------
Q 013176 151 VEIVIATPGRLIDMLEAQHTNL-RRVTYLVLDEADRMLDMG--------------------------------------- 190 (448)
Q Consensus 151 ~~iiv~T~~~l~~~~~~~~~~~-~~~~~iIvDE~h~~~~~~--------------------------------------- 190 (448)
++|||+||..|++...+....+ ....++||||||++.+ .
T Consensus 149 adIVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~~ 227 (551)
T 3crv_A 149 ADVIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLREV 227 (551)
T ss_dssp CSEEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTTS
T ss_pred CCEEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999988754443322 4567999999998764 1
Q ss_pred ----------------CHHHHHH----------------------------HHH--------------------------
Q 013176 191 ----------------FEPQIRK----------------------------IVT-------------------------- 200 (448)
Q Consensus 191 ----------------~~~~~~~----------------------------~~~-------------------------- 200 (448)
+...+.. ++.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~~ 307 (551)
T 3crv_A 228 VLPDEKYIKVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISYY 307 (551)
T ss_dssp CCSCSSCEECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHHH
T ss_pred hhccccccccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHHH
Confidence 0000000 000
Q ss_pred --HcCCC-cceEEEeccCchHHHHHHHHHcCC-CeEEEeCCcc-ccc-ccCcceEEEE-ecc------hhHHHHHHHHHH
Q 013176 201 --QIRPD-RQTLYWSATWPREVETLARQFLRN-PYKVIIGSLE-LKA-NQSINQVVEV-VTE------AEKYNRLIKLLK 267 (448)
Q Consensus 201 --~~~~~-~~~v~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~-~~~~~~~~~~-~~~------~~~~~~l~~~l~ 267 (448)
.+... ..+|++|||+.+ ...+...+... +......... ..+ ......++.. .+. ......+.+.+.
T Consensus 308 l~~~~~~~~svIltSaTL~~-~~~~~~~lGl~~~~~~~~~~~~~~spf~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~i~ 386 (551)
T 3crv_A 308 LNLLNDNELSIILMSGTLPP-REYMEKVWGIKRNMLYLDVEREIQKRVSGSYECYIGVDVTSKYDMRSDNMWKRYADYLL 386 (551)
T ss_dssp HGGGGCTTCEEEEEESSCCC-HHHHHHTSCCCSCEEEEEHHHHTTSCCSCEEEEEEECSCCCCTTTCCHHHHHHHHHHHH
T ss_pred HHHHhccCceEEEEeeCCCc-HHHHHHHhCCCCccccccceeecCCcCCCceEEEEeCCCCCccccCCHHHHHHHHHHHH
Confidence 01122 578899999976 33444433333 2211000000 001 1111111110 110 222455555555
Q ss_pred hhhc--CCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEe--ccccCCCCCC----
Q 013176 268 EVMD--GSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTAT--DVAARGLDVK---- 339 (448)
Q Consensus 268 ~~~~--~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T--~~~~~Gidi~---- 339 (448)
+... .++++||+++....+.+++. .+.++..-..+++ +.+.++.|+...-.||++| ..+++|||+|
T Consensus 387 ~l~~~~~g~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~---~~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g 460 (551)
T 3crv_A 387 KIYFQAKANVLVVFPSYEIMDRVMSR---ISLPKYVESEDSS---VEDLYSAISANNKVLIGSVGKGKLAEGIELRNNDR 460 (551)
T ss_dssp HHHHHCSSEEEEEESCHHHHHHHHTT---CCSSEEECCSSCC---HHHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTE
T ss_pred HHHHhCCCCEEEEecCHHHHHHHHHh---cCCcEEEcCCCCC---HHHHHHHHHhcCCeEEEEEecceecccccccccCC
Confidence 4433 56899999999999998873 3444443333445 4557888854444799998 6999999999
Q ss_pred -CccEEEEcCCCCC------------------------------hhhhhhcccccCCCCCCceEEEEecCC
Q 013176 340 -DIKCVVNYDFPTS------------------------------LEDYVHRIGRTGRAGARGTAFTFFTHS 379 (448)
Q Consensus 340 -~~~~Vi~~~~p~s------------------------------~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 379 (448)
.+++||+..+|.. +..+.|.+||+.|..++..++++++..
T Consensus 461 ~~l~~viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~R 531 (551)
T 3crv_A 461 SLISDVVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLDKR 531 (551)
T ss_dssp ESEEEEEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEESGG
T ss_pred cceeEEEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEeehh
Confidence 3889998887641 112459999999987776667777654
No 88
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.90 E-value=3e-24 Score=196.01 Aligned_cols=194 Identities=16% Similarity=0.134 Sum_probs=140.8
Q ss_pred HHHHHHhcCCeEEecCCCCCcccccccCCCCHHHHHHHHHCCC------CCCcHHHHhHHHHhhcCCcEEEEcCCCChHH
Q 013176 5 EVKMYRARREITVEGHDVPRPIRIFQEANFPDYCLEVIAKLGF------VEPTPIQAQGWPMALKGRDLIGIAETGSGKT 78 (448)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~~~------~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT 78 (448)
++..+.....+.++..+.+.+...++. ..+.+++....+ ..|+++|.++++.++.+++.++++|||+|||
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~f~~~~~~~~~~~~~~~~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT 142 (282)
T 1rif_A 67 QIKKFCDNFGYKAWIDPQINEKEELSR----KDFDEWLSKLEIYSGNKRIEPHWYQKDAVFEGLVNRRRILNLPTSAGRS 142 (282)
T ss_dssp GHHHHHHHTTCCEEECGGGGCCCCCCH----HHHHHHHHTCCCEETTEECCCCHHHHHHHHHHHHHSEEEECCCTTSCHH
T ss_pred HHHHHHHhcCCeeEecCccCCCCCCCH----HHHHhHHhHHHHhcCCCccCccHHHHHHHHHHHhcCCeEEEcCCCCCcH
Confidence 445555556666654333322222221 233334433333 2799999999999998888999999999999
Q ss_pred HHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEcc
Q 013176 79 LSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATP 158 (448)
Q Consensus 79 ~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~ 158 (448)
+++++++...+... ..+++|++|+++|+.|+.++++++.......+..++++..... ......+|+|+||
T Consensus 143 ~~~~~~~~~~~~~~-------~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~I~v~T~ 212 (282)
T 1rif_A 143 LIQALLARYYLENY-------EGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDD---KYKNDAPVVVGTW 212 (282)
T ss_dssp HHHHHHHHHHHHHC-------SSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECSTTCSSTT---CCCTTCSEEEECH
T ss_pred HHHHHHHHHHHHcC-------CCeEEEEECCHHHHHHHHHHHHHhcccccceEEEEeCCCcchh---hhccCCcEEEEch
Confidence 99988777665442 3479999999999999999999997766677788877765433 2234679999999
Q ss_pred HHHHHHHHccccCCCCccEEEEecccccccCCCHHHHHHHHHHcCCCcceEEEeccCchHH
Q 013176 159 GRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATWPREV 219 (448)
Q Consensus 159 ~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~ 219 (448)
+.+... ....+.++++||+||||++.+ ..+..++..+.+..+++++|||+++..
T Consensus 213 ~~l~~~---~~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~~~~~~~l~lSATp~~~~ 266 (282)
T 1rif_A 213 QTVVKQ---PKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMFKFGLSGSLRDGK 266 (282)
T ss_dssp HHHTTS---CGGGGGGEEEEEEETGGGCCH----HHHHHHTTTCTTCCEEEEECSSCCTTS
T ss_pred HHHHhh---HHHHHhhCCEEEEECCccCCc----ccHHHHHHHhhcCCeEEEEeCCCCCcc
Confidence 887543 223467789999999999863 467777777777899999999997653
No 89
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.83 E-value=2e-25 Score=187.49 Aligned_cols=146 Identities=31% Similarity=0.533 Sum_probs=129.4
Q ss_pred ceEEEEecc-hhHHHHHHHHHHhhhcCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCE
Q 013176 247 NQVVEVVTE-AEKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPI 325 (448)
Q Consensus 247 ~~~~~~~~~-~~~~~~l~~~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~v 325 (448)
.+.+..... ..|...|.++++. ..+.++||||+++..++.+++.|++.++.+..+||+++..+|..+++.|++|+.+|
T Consensus 5 ~~~~~~~~~~~~k~~~l~~ll~~-~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~v 83 (170)
T 2yjt_D 5 HQWYYRADDLEHKTALLVHLLKQ-PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 83 (170)
Confidence 344444444 6777778777765 34568999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccccCCCCCCCccEEEEcCCCCChhhhhhcccccCCCCCCceEEEEecCCChHHHHHHHHHHHH
Q 013176 326 MTATDVAARGLDVKDIKCVVNYDFPTSLEDYVHRIGRTGRAGARGTAFTFFTHSNAKFARDLIKILQE 393 (448)
Q Consensus 326 Lv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~ 393 (448)
||||+++++|+|+|++++||++|+|+++.+|+||+||++|.|+.|.+++++...+...+..+.+.+..
T Consensus 84 LvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~ 151 (170)
T 2yjt_D 84 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEE 151 (170)
Confidence 99999999999999999999999999999999999999999999999999998888877777665543
No 90
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.86 E-value=1.7e-20 Score=188.01 Aligned_cols=315 Identities=17% Similarity=0.178 Sum_probs=193.0
Q ss_pred CCcHHHHhHHHH----hhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhh
Q 013176 49 EPTPIQAQGWPM----ALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (448)
Q Consensus 49 ~~~~~Q~~~i~~----~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~ 124 (448)
+|||.|.+++.. +..++++++.+|||+|||++|++|++.++... +.+++|++||++|+.|+.+++..+.
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~-------~~kvli~t~T~~l~~Qi~~el~~l~ 75 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER-------KLKVLYLVRTNSQEEQVIKELRSLS 75 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH-------TCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc-------CCeEEEECCCHHHHHHHHHHHHHHh
Confidence 789999999864 45678999999999999999999999987652 5689999999999999999999886
Q ss_pred cCCCceEEEEEcCCC-----c-----------------h------------------------Hh---------------
Q 013176 125 SRAGIRSTCIYGGAP-----K-----------------G------------------------PQ--------------- 143 (448)
Q Consensus 125 ~~~~~~~~~~~~~~~-----~-----------------~------------------------~~--------------- 143 (448)
...++++..+.|..+ . . ..
T Consensus 76 ~~~~~~~~~l~gr~~lC~~~~~~~~~~~~~~~~~~~~C~~l~~~~~~~~~~~C~~~~~~~~~gd~~~~l~~~~~die~l~ 155 (620)
T 4a15_A 76 STMKIRAIPMQGRVNMCILYRMVDDLHEINAESLAKFCNMKKREVMAGNEAACPYFNFKIRSDETKRFLFDELPTAEEFY 155 (620)
T ss_dssp HHSCCCEEECCCHHHHCSSHHHHCCCSSCCHHHHHHHHHHHHHHHHTTCTTSSTTCSGGGGCHHHHHHHHHHCCCHHHHH
T ss_pred hccCeEEEEEECCCcccccChhhhhcccchhhhHHHHHHHHHhccccCCCCCCCcccccCcccchhHHhccCCCCHHHHH
Confidence 655566655443211 0 0 00
Q ss_pred -------------HHHHhcCCcEEEEccHHHHHHHHccc----c-CCCCccEEEEecccccccC----------------
Q 013176 144 -------------IRDLRRGVEIVIATPGRLIDMLEAQH----T-NLRRVTYLVLDEADRMLDM---------------- 189 (448)
Q Consensus 144 -------------~~~~~~~~~iiv~T~~~l~~~~~~~~----~-~~~~~~~iIvDE~h~~~~~---------------- 189 (448)
.+.....++|||+++..|++...+.. . ....-.++||||||++.+.
T Consensus 156 ~~~~~~~~CPy~~aR~~~~~ADvVV~ny~ylld~~~r~~~~~~~~i~p~~~ivI~DEAHNL~d~a~~~~S~~ls~~~l~~ 235 (620)
T 4a15_A 156 DYGERNNVCPYESMKAALPDADIVIAPYAYFLNRSVAEKFLSHWGVSRNQIVIILDEAHNLPDIGRSIGSFRISVESLNR 235 (620)
T ss_dssp HHHHHTTCCHHHHHHHHGGGCSEEEEEHHHHTCHHHHHHHHHHHTCCGGGEEEEETTGGGHHHHHHHHHCEEEEHHHHHH
T ss_pred HHhhhcCCCccHHHHHHhhcCCEEEeCchhhcCHHHHHHHHHhhccCcCCeEEEEECCCchHHHHHHhhcceeCHHHHHH
Confidence 01112348999999988765442221 1 1233469999999974310
Q ss_pred ----------CC------H-HH-------HH-----------------------------------HH-------HH---
Q 013176 190 ----------GF------E-PQ-------IR-----------------------------------KI-------VT--- 200 (448)
Q Consensus 190 ----------~~------~-~~-------~~-----------------------------------~~-------~~--- 200 (448)
.. . .. +. .+ ..
T Consensus 236 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 315 (620)
T 4a15_A 236 ADREAQAYGDPELSQKIHVSDLIEMIRSALQSMVSERCGKGDVRIRFQEFMEYMRIMNKRSEREIRSLLNYLYLFGEYVE 315 (620)
T ss_dssp HHHHHHHTTCCEEETTEEHHHHHHHHHHHHHHHHHHHCSSSCEEECTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHH
Confidence 00 0 00 00 00 00
Q ss_pred ----------------------H---cC------------------------------CCcceEEEeccCchHHHHHHHH
Q 013176 201 ----------------------Q---IR------------------------------PDRQTLYWSATWPREVETLARQ 225 (448)
Q Consensus 201 ----------------------~---~~------------------------------~~~~~v~~SAT~~~~~~~~~~~ 225 (448)
. .. ....+|++|||+.+ ...+...
T Consensus 316 ~~~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~l~~~~~~~~il~SaTL~p-~~~~~~~ 394 (620)
T 4a15_A 316 NEKEKVGKVPFSYCSSVASRIIAFSDQDEEKYAAILSPEDGGYMQAACLDPSGILEVLKESKTIHMSGTLDP-FDFYSDI 394 (620)
T ss_dssp HHHHHTTSCCCCHHHHHHHHHHHHHTSCTTTEEEEEECGGGCEEEEEECCTHHHHGGGGGSEEEEEESSCCS-HHHHHHH
T ss_pred hhccccccccccHHHHHHHHHHHHhhcCCCCEEEEEEeCCCcEEEEEECCHHHHHHHHhCCeEEEEccCCCc-HHHHHHH
Confidence 0 00 01134789999986 4445554
Q ss_pred HcCCCeEEEeCCcccccccCcceEEEEec---------chhHHHHHHHHHHhhh--cCCcEEEEecchhHHHHHHHHHHh
Q 013176 226 FLRNPYKVIIGSLELKANQSINQVVEVVT---------EAEKYNRLIKLLKEVM--DGSRILIFTETKKGCDQVTRQLRM 294 (448)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~~~l~~~~--~~~k~lVf~~~~~~~~~l~~~L~~ 294 (448)
+..+.......... .. . ++...... .......+.+.+.+.. .+++++||+++....+.+++.|+.
T Consensus 395 lGl~~~~~~~~spf-~~-~--~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~l~~ 470 (620)
T 4a15_A 395 TGFEIPFKKIGEIF-PP-E--NRYIAYYDGVSSKYDTLDEKELDRMATVIEDIILKVKKNTIVYFPSYSLMDRVENRVSF 470 (620)
T ss_dssp HCCCCCEEECCCCS-CG-G--GEEEEEECCC-------CHHHHHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHTSSCCS
T ss_pred hCCCceeeecCCCC-CH-H--HeEEEEeCCCCCcCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHh
Confidence 44432222222221 11 1 11111111 1122334444444333 256799999999999999988872
Q ss_pred CCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEe--ccccCCCCCCC--ccEEEEcCCCCCh-----------------
Q 013176 295 DGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTAT--DVAARGLDVKD--IKCVVNYDFPTSL----------------- 353 (448)
Q Consensus 295 ~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T--~~~~~Gidi~~--~~~Vi~~~~p~s~----------------- 353 (448)
.... ...+++..++..+++.|+ ++-.||+++ ..+++|||+|+ +++||+..+|...
T Consensus 471 --~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~lPfp~~~p~~~ar~~~~~~~~g 546 (620)
T 4a15_A 471 --EHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIILAGLPFPRPDAINRSLFDYYERKYG 546 (620)
T ss_dssp --CCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEESSCCCCCCCHHHHHHHHHHHHHHS
T ss_pred --cchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEEEcCCCCCCCHHHHHHHHHHHHhhC
Confidence 2222 445566678999999999 888899998 48999999996 8899999987411
Q ss_pred ------------hhhhhcccccCCCCCCceEEEEecCC
Q 013176 354 ------------EDYVHRIGRTGRAGARGTAFTFFTHS 379 (448)
Q Consensus 354 ------------~~~~Q~~GR~~R~g~~g~~~~~~~~~ 379 (448)
..+.|.+||+.|...+..++++++..
T Consensus 547 ~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~R 584 (620)
T 4a15_A 547 KGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDKR 584 (620)
T ss_dssp CHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEECGG
T ss_pred CCchHHhHHHHHHHHHHHhCccccCCCceEEEEEEccc
Confidence 12469999999987777777777654
No 91
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.85 E-value=2.4e-20 Score=165.12 Aligned_cols=168 Identities=20% Similarity=0.214 Sum_probs=121.4
Q ss_pred CCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhc-CC
Q 013176 49 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGS-RA 127 (448)
Q Consensus 49 ~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~-~~ 127 (448)
.++++|.++++.+..++++++.+|||||||.++.++++........ ....++++++|+++++.|+.+.+..... ..
T Consensus 61 p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~---~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~ 137 (235)
T 3llm_A 61 PVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR---AAECNIVVTQPRRISAVSVAERVAFERGEEP 137 (235)
T ss_dssp GGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC---GGGCEEEEEESSHHHHHHHHHHHHHTTTCCT
T ss_pred ChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC---CCceEEEEeccchHHHHHHHHHHHHHhcccc
Confidence 5799999999999999999999999999999888888776654321 1245899999999999999988876533 23
Q ss_pred CceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEeccccc-ccCCCH-HHHHHHHHHcCCC
Q 013176 128 GIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRM-LDMGFE-PQIRKIVTQIRPD 205 (448)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~-~~~~~~-~~~~~~~~~~~~~ 205 (448)
+..+..-..... ......++|+|+||+++.+.+.. .+.++++||+||+|.+ .+.++. ..++.+.... ++
T Consensus 138 ~~~~g~~~~~~~-----~~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~-~~ 208 (235)
T 3llm_A 138 GKSCGYSVRFES-----ILPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAY-PE 208 (235)
T ss_dssp TSSEEEEETTEE-----ECCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHC-TT
T ss_pred CceEEEeechhh-----ccCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhC-CC
Confidence 333332211110 00113578999999999998875 4788999999999985 554444 3455555544 67
Q ss_pred cceEEEeccCchHHHHHHHHHcCCC
Q 013176 206 RQTLYWSATWPREVETLARQFLRNP 230 (448)
Q Consensus 206 ~~~v~~SAT~~~~~~~~~~~~~~~~ 230 (448)
.|++++|||++.+. +...+...|
T Consensus 209 ~~~il~SAT~~~~~--~~~~~~~~p 231 (235)
T 3llm_A 209 VRIVLMSATIDTSM--FCEYFFNCP 231 (235)
T ss_dssp SEEEEEECSSCCHH--HHHHTTSCC
T ss_pred CeEEEEecCCCHHH--HHHHcCCCC
Confidence 89999999998764 444444433
No 92
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.84 E-value=3.6e-20 Score=163.76 Aligned_cols=138 Identities=22% Similarity=0.144 Sum_probs=108.2
Q ss_pred CCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCC
Q 013176 49 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAG 128 (448)
Q Consensus 49 ~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~ 128 (448)
.|+++|.+++..+.+++++++++|||+|||.+++.++... +.+++|++|+++|+.|+.+.+.++ +
T Consensus 93 ~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~-----------~~~~liv~P~~~L~~q~~~~~~~~----~ 157 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-----------STPTLIVVPTLALAEQWKERLGIF----G 157 (237)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS-----------CSCEEEEESSHHHHHHHHHHHGGG----C
T ss_pred CcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc-----------CCCEEEEeCCHHHHHHHHHHHHhC----C
Confidence 7999999999999999899999999999999987766553 456999999999999999998884 5
Q ss_pred ce-EEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCCCHHHHHHHHHHcCCCcc
Q 013176 129 IR-STCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQ 207 (448)
Q Consensus 129 ~~-~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~ 207 (448)
+. +..+.++... ..+|+|+|++.+....... ...+++|||||+|++.+..+. .+...+ +..+
T Consensus 158 ~~~v~~~~g~~~~---------~~~i~v~T~~~l~~~~~~~---~~~~~llIiDEaH~l~~~~~~----~i~~~~-~~~~ 220 (237)
T 2fz4_A 158 EEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPAESYV----QIAQMS-IAPF 220 (237)
T ss_dssp GGGEEEESSSCBC---------CCSEEEEEHHHHHHTHHHH---TTTCSEEEEECSSCCCTTTHH----HHHHTC-CCSE
T ss_pred CCeEEEEeCCCCC---------cCCEEEEeHHHHHhhHHHh---cccCCEEEEECCccCCChHHH----HHHHhc-cCCE
Confidence 66 6666665432 4689999999987655421 245899999999999776533 344444 4677
Q ss_pred eEEEeccCchH
Q 013176 208 TLYWSATWPRE 218 (448)
Q Consensus 208 ~v~~SAT~~~~ 218 (448)
++++|||+.+.
T Consensus 221 ~l~LSATp~r~ 231 (237)
T 2fz4_A 221 RLGLTATFERE 231 (237)
T ss_dssp EEEEEESCC--
T ss_pred EEEEecCCCCC
Confidence 89999998754
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.79 E-value=6.3e-19 Score=158.33 Aligned_cols=126 Identities=16% Similarity=0.263 Sum_probs=98.7
Q ss_pred cchhHHHHHHHHHHhhh-cCCcEEEEecchhHHHHHHHHHHhC-CCCeEEEcCCCCHHHHHHHHHHHhcC-CCC-EEEEe
Q 013176 254 TEAEKYNRLIKLLKEVM-DGSRILIFTETKKGCDQVTRQLRMD-GWPALSIHGDKNQSERDWVLAEFRSG-RSP-IMTAT 329 (448)
Q Consensus 254 ~~~~~~~~l~~~l~~~~-~~~k~lVf~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~-vLv~T 329 (448)
....|+..+.+++.+.. .+.++||||++...+..+.+.|.+. ++++..+||+++..+|.++++.|+++ ..+ +|++|
T Consensus 93 ~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st 172 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSV 172 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEEC
T ss_pred ccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEeh
Confidence 45678888888887764 5779999999999999999999885 99999999999999999999999988 677 78899
Q ss_pred ccccCCCCCCCccEEEEcCCCCChhhhhhcccccCCCCCCceEE--EEecCC
Q 013176 330 DVAARGLDVKDIKCVVNYDFPTSLEDYVHRIGRTGRAGARGTAF--TFFTHS 379 (448)
Q Consensus 330 ~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~~--~~~~~~ 379 (448)
+++++|+|++.+++||++|+||++..|.|++||++|.|+.+.+. .++...
T Consensus 173 ~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 173 KAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 224 (271)
T ss_dssp CTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETT
T ss_pred hhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCC
Confidence 99999999999999999999999999999999999999987764 344443
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.87 E-value=4.2e-09 Score=105.50 Aligned_cols=146 Identities=23% Similarity=0.287 Sum_probs=87.9
Q ss_pred cHHHHhHHHHhhcCCcEEEEcCCCChHHH--HHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCC
Q 013176 51 TPIQAQGWPMALKGRDLIGIAETGSGKTL--SYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAG 128 (448)
Q Consensus 51 ~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~--~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~ 128 (448)
.+.|+++++.++.++.+++.|++|+|||. +++++.+..+.. ..+.++++++||..++.++.+.+.......+
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~------~~~~~vll~APTg~AA~~L~e~~~~~~~~l~ 224 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD------GERCRIRLAAPTGKAAARLTESLGKALRQLP 224 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS------SCCCCEEEEBSSHHHHHHHHHHHTHHHHHSS
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh------cCCCeEEEEeCChhHHHHHHHHHHHHHhcCC
Confidence 68999999999999999999999999994 444555544321 1256799999999999999888776544333
Q ss_pred ceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCCCHHHHHHHHHHcCCCcce
Q 013176 129 IRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQT 208 (448)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~ 208 (448)
+..... ..... ....+ ..++-.+|+.. .+.........++++||||++++ + ...+..++..++...++
T Consensus 225 l~~~~~-~~~~~--~~~Ti---h~ll~~~~~~~--~~~~~~~~~l~~d~lIIDEAsml-~---~~~~~~Ll~~l~~~~~l 292 (608)
T 1w36_D 225 LTDEQK-KRIPE--DASTL---HRLLGAQPGSQ--RLRHHAGNPLHLDVLVVDEASMI-D---LPMMSRLIDALPDHARV 292 (608)
T ss_dssp CCSCCC-CSCSC--CCBTT---TSCC-------------CTTSCCSCSEEEECSGGGC-B---HHHHHHHHHTCCTTCEE
T ss_pred CCHHHH-hccch--hhhhh---HhhhccCCCch--HHHhccCCCCCCCEEEEechhhC-C---HHHHHHHHHhCCCCCEE
Confidence 211000 00000 00000 11121222211 01111222236899999999955 3 45677788888888888
Q ss_pred EEEecc
Q 013176 209 LYWSAT 214 (448)
Q Consensus 209 v~~SAT 214 (448)
+++.-.
T Consensus 293 iLvGD~ 298 (608)
T 1w36_D 293 IFLGDR 298 (608)
T ss_dssp EEEECT
T ss_pred EEEcch
Confidence 877544
No 95
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.64 E-value=2.1e-06 Score=83.21 Aligned_cols=69 Identities=14% Similarity=0.141 Sum_probs=50.9
Q ss_pred CCCCCCcHHHHhHHHHhhcC-----CcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHH
Q 013176 45 LGFVEPTPIQAQGWPMALKG-----RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEE 119 (448)
Q Consensus 45 ~~~~~~~~~Q~~~i~~~~~~-----~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~ 119 (448)
+.|..|++.|++++..+... ..+++.|+.|+|||.+. ..++..+.... ...+++++||...+..+.+.
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~~------~~~il~~a~T~~Aa~~l~~~ 93 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALISTG------ETGIILAAPTHAAKKILSKL 93 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHTT------CCCEEEEESSHHHHHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhcC------CceEEEecCcHHHHHHHHhh
Confidence 55888999999999976542 38899999999999763 44455554431 23699999998887766655
Q ss_pred H
Q 013176 120 A 120 (448)
Q Consensus 120 ~ 120 (448)
+
T Consensus 94 ~ 94 (459)
T 3upu_A 94 S 94 (459)
T ss_dssp H
T ss_pred h
Confidence 4
No 96
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.58 E-value=2.4e-07 Score=93.85 Aligned_cols=67 Identities=22% Similarity=0.142 Sum_probs=53.4
Q ss_pred CCcHHHHhHHHHhhcCC-cEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013176 49 EPTPIQAQGWPMALKGR-DLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (448)
Q Consensus 49 ~~~~~Q~~~i~~~~~~~-~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~ 123 (448)
.+++.|.+|+..++..+ -.+|.||+|+|||.+.+-.+. ++..+ +.++|+++||..-++++.+.+...
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~-~l~~~-------~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIIL-QAVKQ-------GLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHH-HHHHT-------TCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHH-HHHhC-------CCeEEEEcCchHHHHHHHHHHHhc
Confidence 68999999999988655 468889999999987554444 43332 567999999999999999888764
No 97
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.55 E-value=1.3e-06 Score=87.91 Aligned_cols=70 Identities=21% Similarity=0.177 Sum_probs=55.5
Q ss_pred CCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013176 47 FVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (448)
Q Consensus 47 ~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~ 123 (448)
+..+++.|.+|+..++.+.-.+|.||+|+|||.+.. .++..+... .+.++++++||...+.++.+.+.+.
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~-~~i~~l~~~------~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA-TIVYHLARQ------GNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHH-HHHHHHHTS------SSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHH-HHHHHHHHc------CCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 346899999999998887788999999999998744 344444331 2567999999999999999888764
No 98
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.54 E-value=3.3e-07 Score=90.87 Aligned_cols=124 Identities=19% Similarity=0.152 Sum_probs=81.6
Q ss_pred CCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhc
Q 013176 46 GFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGS 125 (448)
Q Consensus 46 ~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~ 125 (448)
++ .+++.|++++..+..++.+++.|++|+|||.+ +..++..+... +.++++++||...+..+.+.+.
T Consensus 187 ~~-~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~-i~~l~~~l~~~-------g~~Vl~~ApT~~Aa~~L~e~~~---- 253 (574)
T 3e1s_A 187 RK-GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTT-TKAVADLAESL-------GLEVGLCAPTGKAARRLGEVTG---- 253 (574)
T ss_dssp TT-TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHH-HHHHHHHHHHT-------TCCEEEEESSHHHHHHHHHHHT----
T ss_pred cC-CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHH-HHHHHHHHHhc-------CCeEEEecCcHHHHHHhHhhhc----
Confidence 44 68999999999999988999999999999976 33444444442 5679999999988877665432
Q ss_pred CCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHH----HHccccCCCCccEEEEecccccccCCCHHHHHHHHHH
Q 013176 126 RAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDM----LEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQ 201 (448)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~----~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~ 201 (448)
.. ..|.++++.. +.........+++|||||++.+. ...+..++..
T Consensus 254 ---~~------------------------a~Tih~ll~~~~~~~~~~~~~~~~~dvlIIDEasml~----~~~~~~Ll~~ 302 (574)
T 3e1s_A 254 ---RT------------------------ASTVHRLLGYGPQGFRHNHLEPAPYDLLIVDEVSMMG----DALMLSLLAA 302 (574)
T ss_dssp ---SC------------------------EEEHHHHTTEETTEESCSSSSCCSCSEEEECCGGGCC----HHHHHHHHTT
T ss_pred ---cc------------------------HHHHHHHHcCCcchhhhhhcccccCCEEEEcCccCCC----HHHHHHHHHh
Confidence 11 1111111110 11112233457899999999763 4566677777
Q ss_pred cCCCcceEEEec
Q 013176 202 IRPDRQTLYWSA 213 (448)
Q Consensus 202 ~~~~~~~v~~SA 213 (448)
++...+++++.-
T Consensus 303 ~~~~~~lilvGD 314 (574)
T 3e1s_A 303 VPPGARVLLVGD 314 (574)
T ss_dssp SCTTCEEEEEEC
T ss_pred CcCCCEEEEEec
Confidence 766666666543
No 99
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=98.52 E-value=1.2e-05 Score=81.82 Aligned_cols=72 Identities=15% Similarity=0.095 Sum_probs=55.5
Q ss_pred CCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhc
Q 013176 48 VEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGS 125 (448)
Q Consensus 48 ~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~ 125 (448)
..+++.|.+++.. ....++|.|+.|||||.+.+--+...+..... ...+++++++|+..+.++.+.+.++..
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~----~~~~iL~ltft~~aa~e~~~rl~~~~~ 79 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENC----SPYSIMAVTFTNKAAAEMRHRIGQLMG 79 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCC----CGGGEEEEESSHHHHHHHHHHHHHHHC
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCC----ChhhEEEEeccHHHHHHHHHHHHHHhc
Confidence 3689999999983 35679999999999998866555554443211 245799999999999999999987643
No 100
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.47 E-value=1.7e-06 Score=89.02 Aligned_cols=70 Identities=19% Similarity=0.191 Sum_probs=55.3
Q ss_pred CCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013176 47 FVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (448)
Q Consensus 47 ~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~ 123 (448)
+..+++.|.+|+..++.+.-.+|.||+|+|||.+..-. +.++... .+.++++++||...+.++.+.+.+.
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~-i~~l~~~------~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATI-VYHLSKI------HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHH-HHHHHHH------HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHH-HHHHHhC------CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 34689999999999988777899999999999875433 3333221 1557999999999999999998875
No 101
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=98.41 E-value=3.5e-06 Score=86.67 Aligned_cols=69 Identities=22% Similarity=0.170 Sum_probs=55.0
Q ss_pred CCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013176 48 VEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (448)
Q Consensus 48 ~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~ 123 (448)
..+++.|.+|+..++.+.-.+|.||+|+|||.+.. .++..+... .+.++++++||...+.++.+.+...
T Consensus 355 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~-~~i~~l~~~------~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA-TIVYHLARQ------GNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp CCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHH-HHHHHHHTT------CSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHH-HHHHHHHHc------CCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 36899999999999887788999999999998743 444444432 2567999999999999998888764
No 102
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=97.97 E-value=9.3e-05 Score=66.54 Aligned_cols=123 Identities=9% Similarity=0.041 Sum_probs=86.8
Q ss_pred chhHHHHHHHHHHhhhc-CCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEecccc
Q 013176 255 EAEKYNRLIKLLKEVMD-GSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAA 333 (448)
Q Consensus 255 ~~~~~~~l~~~l~~~~~-~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~ 333 (448)
.+.|+..|..++..... +.+++||++..+...-+.+.+...+++...+.|.....+ .+ -.+....+.+.|....
T Consensus 107 ~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~-~k----~~~~~~~i~Lltsag~ 181 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSA-AA----ANDFSCTVHLFSSEGI 181 (328)
T ss_dssp TCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCC
T ss_pred cCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhh-hh----cccCCceEEEEECCCC
Confidence 46677777777766554 669999999999999999999999999999999855432 11 1244555655576666
Q ss_pred CCCC-----CCCccEEEEcCCCCChhhh-hhcccccCCCC--CC--ceEEEEecCCChH
Q 013176 334 RGLD-----VKDIKCVVNYDFPTSLEDY-VHRIGRTGRAG--AR--GTAFTFFTHSNAK 382 (448)
Q Consensus 334 ~Gid-----i~~~~~Vi~~~~p~s~~~~-~Q~~GR~~R~g--~~--g~~~~~~~~~~~~ 382 (448)
-|+| +...+.||.||..|++..= +|++-|+.|.+ +. -.++.++..+.-+
T Consensus 182 ~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiE 240 (328)
T 3hgt_A 182 NFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSID 240 (328)
T ss_dssp CTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHH
T ss_pred CCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHH
Confidence 6776 5679999999999999985 99999998873 33 3446666655443
No 103
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.63 E-value=0.00032 Score=65.37 Aligned_cols=71 Identities=13% Similarity=0.014 Sum_probs=55.6
Q ss_pred CCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhc
Q 013176 49 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGS 125 (448)
Q Consensus 49 ~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~ 125 (448)
.|+|+|++++..+...+-+++..+-+.|||.+....++..+... .+..++++.|+...+..+.+.++.+..
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~------~g~~v~~vA~t~~qA~~vf~~i~~mi~ 233 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN------KDKAVGILAHKGSMSAEVLDRTKQAIE 233 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSS------SSCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhC------CCCeEEEEeCCHHHHHHHHHHHHHHHH
Confidence 78999999998876556688889999999988766665544432 256799999999999888877776654
No 104
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.50 E-value=0.0018 Score=64.69 Aligned_cols=73 Identities=12% Similarity=-0.002 Sum_probs=57.3
Q ss_pred CCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCC
Q 013176 49 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRA 127 (448)
Q Consensus 49 ~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~ 127 (448)
.|+|+|+.++..+...+.+++..+-++|||.+....++..+... .+..++++.|+...+.++.+.++.+....
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~------~~~~i~~va~t~~qA~~~~~~i~~~i~~~ 235 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN------KDKAVGILAHKGSMSAEVLDRTKQAIELL 235 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTS------SSCEEEEEESSHHHHHHHHHHHHHHHTTS
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhC------CCCeEEEEECCHHHHHHHHHHHHHHHHhC
Confidence 58999999998875556788899999999988665555554432 24579999999999999888888776544
No 105
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.40 E-value=0.00094 Score=55.42 Aligned_cols=31 Identities=23% Similarity=0.207 Sum_probs=22.7
Q ss_pred cHHHHhHHHHhh---------cCCcEEEEcCCCChHHHHH
Q 013176 51 TPIQAQGWPMAL---------KGRDLIGIAETGSGKTLSY 81 (448)
Q Consensus 51 ~~~Q~~~i~~~~---------~~~~~lv~~~tGsGKT~~~ 81 (448)
.+.|++++..+. .++.+++.||+|+|||..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHH
Confidence 456666665543 3578999999999999753
No 106
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=97.35 E-value=0.00068 Score=63.99 Aligned_cols=107 Identities=19% Similarity=0.113 Sum_probs=62.7
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHH
Q 013176 66 DLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIR 145 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (448)
-.++.|+.|+|||.... +.+.. ...+|++||++++.++.+.+.+.+..
T Consensus 163 v~~I~G~aGsGKTt~I~----~~~~~---------~~~lVlTpT~~aa~~l~~kl~~~~~~------------------- 210 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEIL----SRVNF---------EEDLILVPGRQAAEMIRRRANASGII------------------- 210 (446)
T ss_dssp EEEEEECTTSCHHHHHH----HHCCT---------TTCEEEESCHHHHHHHHHHHTTTSCC-------------------
T ss_pred EEEEEcCCCCCHHHHHH----HHhcc---------CCeEEEeCCHHHHHHHHHHhhhcCcc-------------------
Confidence 35778999999997532 22111 23699999999999888887542110
Q ss_pred HHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCCCHHHHHHHHHHcCCCcceEEEecc
Q 013176 146 DLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSAT 214 (448)
Q Consensus 146 ~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT 214 (448)
.....-|.|.++++-. ......-..+++||||+-.+ . ...+..++...+. .+++++.-+
T Consensus 211 ---~~~~~~V~T~dsfL~~--~~~~~~~~~d~liiDE~sm~-~---~~~l~~l~~~~~~-~~vilvGD~ 269 (446)
T 3vkw_A 211 ---VATKDNVRTVDSFLMN--YGKGARCQFKRLFIDEGLML-H---TGCVNFLVEMSLC-DIAYVYGDT 269 (446)
T ss_dssp ---CCCTTTEEEHHHHHHT--TTSSCCCCCSEEEEETGGGS-C---HHHHHHHHHHTTC-SEEEEEECT
T ss_pred ---ccccceEEEeHHhhcC--CCCCCCCcCCEEEEeCcccC-C---HHHHHHHHHhCCC-CEEEEecCc
Confidence 0012347787776431 11112224789999999965 2 2334444444433 555555444
No 107
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.22 E-value=0.00059 Score=57.07 Aligned_cols=38 Identities=13% Similarity=0.081 Sum_probs=25.8
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcH
Q 013176 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTR 110 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~ 110 (448)
+=.++.+|+|+|||...+ -++..+..+ +.+++++.|..
T Consensus 9 ~i~v~~G~mgsGKTT~ll-~~a~r~~~~-------g~kV~v~k~~~ 46 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELI-RRIRRAKIA-------KQKIQVFKPEI 46 (191)
T ss_dssp EEEEEECSTTSSHHHHHH-HHHHHHHHT-------TCCEEEEEEC-
T ss_pred EEEEEECCCCCcHHHHHH-HHHHHHHHC-------CCEEEEEEecc
Confidence 345778999999997644 444444332 66799998863
No 108
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=97.19 E-value=0.00096 Score=68.33 Aligned_cols=71 Identities=17% Similarity=0.077 Sum_probs=55.4
Q ss_pred CCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhh
Q 013176 48 VEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFG 124 (448)
Q Consensus 48 ~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~ 124 (448)
..+++-|++++.. ....++|.|+.|||||.+.+--+...+..... ....+++++.|+..+.++.+++.++.
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~----~p~~IL~vTFTnkAA~Em~~Rl~~~l 80 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHV----APWNILAITFTNKAAREMRERVQSLL 80 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCC----CGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCC----CHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 3689999999986 34689999999999998866555555543211 24579999999999999999998764
No 109
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.07 E-value=0.0007 Score=57.19 Aligned_cols=37 Identities=14% Similarity=0.081 Sum_probs=24.6
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHH
Q 013176 67 LIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRE 111 (448)
Q Consensus 67 ~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~ 111 (448)
.++.+++|+|||..++- .+..+... +.+++++.|...
T Consensus 31 ~vitG~MgsGKTT~lL~-~a~r~~~~-------g~kVli~k~~~d 67 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIR-RVRRTQFA-------KQHAIVFKPCID 67 (214)
T ss_dssp EEEECSTTSCHHHHHHH-HHHHHHHT-------TCCEEEEECC--
T ss_pred EEEECCCCCcHHHHHHH-HHHHHHHC-------CCEEEEEEeccC
Confidence 45789999999976444 44443332 667999998653
No 110
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.98 E-value=0.00086 Score=55.88 Aligned_cols=39 Identities=23% Similarity=0.125 Sum_probs=25.5
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcH
Q 013176 64 GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTR 110 (448)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~ 110 (448)
+.-.++.+|+|+|||..++ -++..+... +.+++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~ll-~~~~~~~~~-------g~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELL-SFVEIYKLG-------KKKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHH-HHHHHHHHT-------TCEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHH-HHHHHHHHC-------CCeEEEEeecc
Confidence 3456788999999997643 333333332 45688888873
No 111
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.96 E-value=0.00099 Score=57.13 Aligned_cols=90 Identities=12% Similarity=0.112 Sum_probs=49.2
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhH
Q 013176 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQI 144 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (448)
.-.++.+++|+|||... +.++..+..+ +.+++++.|...- . -........++..
T Consensus 13 ~i~litG~mGsGKTT~l-l~~~~r~~~~-------g~kVli~~~~~d~----r-~~~~i~srlG~~~------------- 66 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAEL-IRRLHRLEYA-------DVKYLVFKPKIDT----R-SIRNIQSRTGTSL------------- 66 (223)
T ss_dssp EEEEEECSTTSCHHHHH-HHHHHHHHHT-------TCCEEEEEECCCG----G-GCSSCCCCCCCSS-------------
T ss_pred EEEEEECCCCCcHHHHH-HHHHHHHHhc-------CCEEEEEEeccCc----h-HHHHHHHhcCCCc-------------
Confidence 34677799999999764 4444444432 5568888774310 0 0001111111110
Q ss_pred HHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccc
Q 013176 145 RDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRML 187 (448)
Q Consensus 145 ~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~ 187 (448)
..+-+.+.+.++..+.... .-..+++|||||+|.+.
T Consensus 67 ------~~~~~~~~~~i~~~i~~~~-~~~~~dvViIDEaQ~l~ 102 (223)
T 2b8t_A 67 ------PSVEVESAPEILNYIMSNS-FNDETKVIGIDEVQFFD 102 (223)
T ss_dssp ------CCEEESSTHHHHHHHHSTT-SCTTCCEEEECSGGGSC
T ss_pred ------cccccCCHHHHHHHHHHHh-hCCCCCEEEEecCccCc
Confidence 1233455666666555432 22457899999999753
No 112
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=96.93 E-value=0.0032 Score=68.44 Aligned_cols=126 Identities=17% Similarity=0.081 Sum_probs=79.2
Q ss_pred CCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCC
Q 013176 49 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAG 128 (448)
Q Consensus 49 ~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~ 128 (448)
.+++-|.+++..- +++++|.|+.|||||.+.+--++..+..... .-...+++++++|++.+.++.+.+........
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~--~~~~~~il~~Tft~~aa~e~~~ri~~~l~~~~ 85 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEEN--PIDVDRLLVVTFTNASAAEMKHRIAEALEKEL 85 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSS--CCCGGGEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCC--CCCccceEEEeccHHHHHHHHHHHHHHHHHHh
Confidence 6899999999864 7799999999999999866656665554211 11245799999999999999999876432100
Q ss_pred ceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCC--CCccEEEEeccc
Q 013176 129 IRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNL--RRVTYLVLDEAD 184 (448)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~--~~~~~iIvDE~h 184 (448)
.. ..........+..-..+-|+|.++|...+.+..... -..++-++||..
T Consensus 86 ~~------~~~~~~~~~~~~~~~~~~i~T~hsf~~~~l~~~~~~~~~~~~f~~~d~~~ 137 (1232)
T 3u4q_A 86 VQ------RPGSLHIRRQLSLLNRASISTLHSFCLQVLKKYYYLIDLDPGFRIADQTE 137 (1232)
T ss_dssp HH------STTCHHHHHHHHHTTTSEEECHHHHHHHHHHHHGGGTTCCTTCEECCHHH
T ss_pred hc------CcchHHHHHHHhccCCCeEEeHHHHHHHHHHhhHHhcCCCCCCeeCCHHH
Confidence 00 000111222222234578999999976554432211 112344778765
No 113
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.91 E-value=0.012 Score=53.86 Aligned_cols=17 Identities=24% Similarity=0.302 Sum_probs=14.9
Q ss_pred CcEEEEcCCCChHHHHH
Q 013176 65 RDLIGIAETGSGKTLSY 81 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~ 81 (448)
..+++.||+|+|||..+
T Consensus 38 ~~lll~G~~GtGKT~la 54 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLL 54 (324)
T ss_dssp SSEEEECSSSSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 57999999999999763
No 114
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=96.80 E-value=0.0021 Score=65.40 Aligned_cols=71 Identities=17% Similarity=0.062 Sum_probs=55.0
Q ss_pred CCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhc
Q 013176 49 EPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGS 125 (448)
Q Consensus 49 ~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~ 125 (448)
.+++-|++++... ...++|.|+.|||||.+.+--+...+..... ...++++++.|+..+.++.+++.+...
T Consensus 2 ~L~~~Q~~av~~~--~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~----~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCGY----QARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp CCCHHHHHHHHCC--SSEEEECCCTTSCHHHHHHHHHHHHHHHHCC----CGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHhCC--CCCEEEEeCCCCChHHHHHHHHHHHHHhcCC----CHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 5789999999863 5688999999999998866555555443111 245799999999999999999987644
No 115
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.77 E-value=0.014 Score=52.75 Aligned_cols=26 Identities=8% Similarity=-0.152 Sum_probs=18.9
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhh
Q 013176 64 GRDLIGIAETGSGKTLSYLLPAFVHVS 90 (448)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~l~~l~~~~ 90 (448)
+.++++.||+|+|||.+. -.++..+.
T Consensus 45 ~~~lli~GpPGTGKT~~v-~~v~~~L~ 70 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLV-NDVMDELI 70 (318)
T ss_dssp CCEEEEECCCSHHHHHHH-HHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHHH
Confidence 358999999999999763 34444444
No 116
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.71 E-value=0.0021 Score=54.80 Aligned_cols=38 Identities=13% Similarity=0.041 Sum_probs=25.6
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcH
Q 013176 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTR 110 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~ 110 (448)
.-.++.+++|+|||...+-.+. .+... +.+++++-|..
T Consensus 20 ~l~v~~G~MgsGKTT~lL~~~~-r~~~~-------g~kvli~kp~~ 57 (234)
T 2orv_A 20 QIQVILGPMFSGKSTELMRRVR-RFQIA-------QYKCLVIKYAK 57 (234)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-HHHTT-------TCCEEEEEETT
T ss_pred EEEEEECCCCCcHHHHHHHHHH-HHHHC-------CCeEEEEeecC
Confidence 3457789999999976444443 33332 66789888854
No 117
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.68 E-value=0.00094 Score=53.48 Aligned_cols=18 Identities=28% Similarity=0.375 Sum_probs=15.9
Q ss_pred cCCcEEEEcCCCChHHHH
Q 013176 63 KGRDLIGIAETGSGKTLS 80 (448)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~ 80 (448)
.++.+++.+|+|+|||..
T Consensus 35 ~g~~~~l~G~~G~GKTtL 52 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHL 52 (149)
T ss_dssp CCSEEEEESSSTTTTCHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 677899999999999975
No 118
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=96.63 E-value=0.014 Score=58.08 Aligned_cols=113 Identities=19% Similarity=0.215 Sum_probs=71.5
Q ss_pred CCcHHHHhHHHHhhc--CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcC
Q 013176 49 EPTPIQAQGWPMALK--GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSR 126 (448)
Q Consensus 49 ~~~~~Q~~~i~~~~~--~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~ 126 (448)
.++..|.+++..+.. ....++.|+-|.|||.+.-+.+ ..+.. .++|.+|+.+-+..+.+...+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~-a~~~~----------~~~vtAP~~~a~~~l~~~~~~---- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLI-SRIAG----------RAIVTAPAKASTDVLAQFAGE---- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHH-HHSSS----------CEEEECSSCCSCHHHHHHHGG----
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHH-HHHHh----------CcEEECCCHHHHHHHHHHhhC----
Confidence 689999999998886 3456888999999996544433 33322 269999987665433332211
Q ss_pred CCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCCCHHHHHHHHHHcCCCc
Q 013176 127 AGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDR 206 (448)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~ 206 (448)
.|-+..|+.+.. .....+++|||||=.+ -.+.+..++.. .
T Consensus 240 -------------------------~i~~~~Pd~~~~-------~~~~~dlliVDEAAaI----p~pll~~ll~~----~ 279 (671)
T 2zpa_A 240 -------------------------KFRFIAPDALLA-------SDEQADWLVVDEAAAI----PAPLLHQLVSR----F 279 (671)
T ss_dssp -------------------------GCCBCCHHHHHH-------SCCCCSEEEEETGGGS----CHHHHHHHHTT----S
T ss_pred -------------------------CeEEeCchhhhh-------CcccCCEEEEEchhcC----CHHHHHHHHhh----C
Confidence 133446655432 2335789999999986 35556555542 2
Q ss_pred ceEEEeccCc
Q 013176 207 QTLYWSATWP 216 (448)
Q Consensus 207 ~~v~~SAT~~ 216 (448)
..++||.|..
T Consensus 280 ~~v~~~tTv~ 289 (671)
T 2zpa_A 280 PRTLLTTTVQ 289 (671)
T ss_dssp SEEEEEEEBS
T ss_pred CeEEEEecCC
Confidence 3466777753
No 119
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.59 E-value=0.003 Score=53.24 Aligned_cols=38 Identities=16% Similarity=-0.023 Sum_probs=25.2
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcH
Q 013176 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTR 110 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~ 110 (448)
.-.++.+++|+|||...+- .+..+... +.+++++.|..
T Consensus 29 ~I~vitG~M~sGKTT~Llr-~~~r~~~~-------g~kvli~kp~~ 66 (219)
T 3e2i_A 29 WIECITGSMFSGKSEELIR-RLRRGIYA-------KQKVVVFKPAI 66 (219)
T ss_dssp EEEEEEECTTSCHHHHHHH-HHHHHHHT-------TCCEEEEEEC-
T ss_pred eEEEEECCCCCCHHHHHHH-HHHHHHHc-------CCceEEEEecc
Confidence 3457789999999976443 34444432 55689998864
No 120
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.42 E-value=0.0026 Score=52.80 Aligned_cols=37 Identities=16% Similarity=0.079 Sum_probs=24.9
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCc
Q 013176 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPT 109 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~ 109 (448)
+=.++.+|+|+|||.- ++-++...... +.+++++.|.
T Consensus 21 ~l~fiyG~MgsGKTt~-Ll~~i~n~~~~-------~~kvl~~kp~ 57 (195)
T 1w4r_A 21 QIQVILGPMFSGKSTE-LMRRVRRFQIA-------QYKCLVIKYA 57 (195)
T ss_dssp EEEEEEECTTSCHHHH-HHHHHHHHHHT-------TCCEEEEEET
T ss_pred EEEEEECCCCCcHHHH-HHHHHHHHHHc-------CCeEEEEccc
Confidence 3467789999999955 44444443332 5668888875
No 121
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.36 E-value=0.03 Score=46.05 Aligned_cols=19 Identities=26% Similarity=0.279 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 013176 64 GRDLIGIAETGSGKTLSYL 82 (448)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~ 82 (448)
..++++.||+|+|||..+.
T Consensus 43 ~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp SCEEEEESCGGGCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 3579999999999997643
No 122
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.33 E-value=0.028 Score=53.74 Aligned_cols=18 Identities=28% Similarity=0.193 Sum_probs=15.2
Q ss_pred CcEEEEcCCCChHHHHHH
Q 013176 65 RDLIGIAETGSGKTLSYL 82 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~ 82 (448)
..+++.||+|+|||..+.
T Consensus 131 ~~lll~Gp~G~GKTtLa~ 148 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQ 148 (440)
T ss_dssp CCEEEECSSSSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 579999999999997643
No 123
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.28 E-value=0.038 Score=48.98 Aligned_cols=18 Identities=22% Similarity=0.049 Sum_probs=15.2
Q ss_pred CcEEEEcCCCChHHHHHH
Q 013176 65 RDLIGIAETGSGKTLSYL 82 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~ 82 (448)
.++++.||+|+|||..+.
T Consensus 65 ~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 479999999999997643
No 124
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.18 E-value=0.015 Score=53.42 Aligned_cols=40 Identities=18% Similarity=0.071 Sum_probs=26.9
Q ss_pred CcHHHHhHHHHhh----cCC---cEEEEcCCCChHHHHHHHHHHHHhh
Q 013176 50 PTPIQAQGWPMAL----KGR---DLIGIAETGSGKTLSYLLPAFVHVS 90 (448)
Q Consensus 50 ~~~~Q~~~i~~~~----~~~---~~lv~~~tGsGKT~~~~l~~l~~~~ 90 (448)
++|||.+++..+. .++ ..++.||.|+|||..+.. +...+.
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~-la~~l~ 49 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYA-LSRYLL 49 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHH-HHHHHT
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHH-HHHHHh
Confidence 4688888776554 332 488899999999976443 333443
No 125
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.18 E-value=0.017 Score=50.00 Aligned_cols=19 Identities=16% Similarity=0.018 Sum_probs=15.9
Q ss_pred cCCcEEEEcCCCChHHHHH
Q 013176 63 KGRDLIGIAETGSGKTLSY 81 (448)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~ 81 (448)
.+..+++.||+|+|||..+
T Consensus 51 ~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp SCSEEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3568999999999999753
No 126
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.13 E-value=0.048 Score=46.27 Aligned_cols=40 Identities=15% Similarity=0.216 Sum_probs=23.5
Q ss_pred CCccEEEEecccccccCCCHHHHHHHHHHcCCCcceEEEec
Q 013176 173 RRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSA 213 (448)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~SA 213 (448)
....+||+||+|.+.... ...+..++........+++.|.
T Consensus 101 ~~~~vliiDe~~~l~~~~-~~~l~~~l~~~~~~~~~i~~~~ 140 (226)
T 2chg_A 101 APFKIIFLDEADALTADA-QAALRRTMEMYSKSCRFILSCN 140 (226)
T ss_dssp CSCEEEEEETGGGSCHHH-HHHHHHHHHHTTTTEEEEEEES
T ss_pred cCceEEEEeChhhcCHHH-HHHHHHHHHhcCCCCeEEEEeC
Confidence 346799999999875432 3344445554444455554443
No 127
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=96.11 E-value=0.024 Score=58.10 Aligned_cols=84 Identities=15% Similarity=0.190 Sum_probs=68.4
Q ss_pred HHHhhhcCCcEEEEecchhHHHHHHHHHHhC----CCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEec-cccCCCCCC
Q 013176 265 LLKEVMDGSRILIFTETKKGCDQVTRQLRMD----GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD-VAARGLDVK 339 (448)
Q Consensus 265 ~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-~~~~Gidi~ 339 (448)
++.....+.+++|.++++.-|.+.++.+++. ++++..++|+++..++...++.+.+|+.+|+|+|. .+...+++.
T Consensus 410 il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~ 489 (780)
T 1gm5_A 410 ILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFK 489 (780)
T ss_dssp HHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCS
T ss_pred HHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhcc
Confidence 3333345789999999999998888877653 78999999999999999999999999999999994 445667888
Q ss_pred CccEEEEcC
Q 013176 340 DIKCVVNYD 348 (448)
Q Consensus 340 ~~~~Vi~~~ 348 (448)
++.+||.=.
T Consensus 490 ~l~lVVIDE 498 (780)
T 1gm5_A 490 NLGLVIIDE 498 (780)
T ss_dssp CCCEEEEES
T ss_pred CCceEEecc
Confidence 888877433
No 128
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.06 E-value=0.046 Score=51.71 Aligned_cols=54 Identities=19% Similarity=0.357 Sum_probs=35.7
Q ss_pred CCccEEEEecccccc--c-CCCHHHHHHHHHHcCCCcceEEEeccCchHHHHHHHHH
Q 013176 173 RRVTYLVLDEADRML--D-MGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQF 226 (448)
Q Consensus 173 ~~~~~iIvDE~h~~~--~-~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~ 226 (448)
..++++|+|++-+.. . ..+...+..+.....+..-++.++|+...+....+..+
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f 234 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRF 234 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHH
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHH
Confidence 468899999998654 2 22445666666677677777888888655544444443
No 129
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.91 E-value=0.044 Score=46.00 Aligned_cols=17 Identities=29% Similarity=0.272 Sum_probs=15.0
Q ss_pred CcEEEEcCCCChHHHHH
Q 013176 65 RDLIGIAETGSGKTLSY 81 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~ 81 (448)
.++++.||+|+|||..+
T Consensus 55 ~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 68999999999999764
No 130
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.85 E-value=0.079 Score=49.42 Aligned_cols=18 Identities=28% Similarity=0.244 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCChHHHHH
Q 013176 64 GRDLIGIAETGSGKTLSY 81 (448)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~ 81 (448)
...+++.||+|+|||..+
T Consensus 44 ~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCEEECBCTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 357999999999999753
No 131
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.78 E-value=0.15 Score=41.81 Aligned_cols=17 Identities=35% Similarity=0.411 Sum_probs=14.8
Q ss_pred CcEEEEcCCCChHHHHH
Q 013176 65 RDLIGIAETGSGKTLSY 81 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~ 81 (448)
..+++.||+|+|||..+
T Consensus 44 ~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CceEEECCCCCCHHHHH
Confidence 57999999999999764
No 132
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.78 E-value=0.045 Score=48.85 Aligned_cols=56 Identities=16% Similarity=0.153 Sum_probs=31.7
Q ss_pred CcccccccCCCCHHHHHHHHHCCCCCCcHHHHhHHHH--hhcCCcEEEEcCCCChHHHHH
Q 013176 24 RPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPM--ALKGRDLIGIAETGSGKTLSY 81 (448)
Q Consensus 24 ~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~i~~--~~~~~~~lv~~~tGsGKT~~~ 81 (448)
.|..+|+++.-.+...+.+...=- .+ ....+.+.. +....++++.||+|+|||..+
T Consensus 11 ~~~~~~~~i~G~~~~~~~l~~~~~-~~-~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 11 RPNVRYEDIGGLEKQMQEIREVVE-LP-LKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTH-HH-HHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHH-HH-hhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 445568887666666665554210 00 011122222 234568999999999999754
No 133
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.75 E-value=0.018 Score=52.56 Aligned_cols=56 Identities=11% Similarity=0.112 Sum_probs=31.4
Q ss_pred CcccccccCCCCHHHHHHHHHCCCCCCcHHHHh-HHH-HhhcCCcEEEEcCCCChHHHHHH
Q 013176 24 RPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQ-GWP-MALKGRDLIGIAETGSGKTLSYL 82 (448)
Q Consensus 24 ~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~-~i~-~~~~~~~~lv~~~tGsGKT~~~~ 82 (448)
.|..+|+++.-.+...+.+...=. .|.... .+. ......++++.||+|+|||..+-
T Consensus 12 ~~~~~~~di~G~~~~~~~l~~~i~---~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~ 69 (322)
T 3eie_A 12 KPNVKWEDVAGLEGAKEALKEAVI---LPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAK 69 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHTH---HHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHH
T ss_pred CCCCCHHHhcChHHHHHHHHHHHH---HHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHH
Confidence 556678887666666666654210 111100 000 01123579999999999997643
No 134
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.73 E-value=0.013 Score=53.01 Aligned_cols=19 Identities=21% Similarity=0.272 Sum_probs=16.2
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 013176 64 GRDLIGIAETGSGKTLSYL 82 (448)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~ 82 (448)
+.++++.||+|+|||..+.
T Consensus 152 ~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4789999999999998644
No 135
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.72 E-value=0.15 Score=42.33 Aligned_cols=34 Identities=29% Similarity=0.218 Sum_probs=26.7
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEE
Q 013176 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVL 106 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil 106 (448)
..+++..++|.|||.+++-.++..+.. +.+|+|+
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~--------G~rV~~v 62 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGH--------GKNVGVV 62 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHT--------TCCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHC--------CCeEEEE
Confidence 478888999999999877666666555 6678887
No 136
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.72 E-value=0.022 Score=51.96 Aligned_cols=37 Identities=19% Similarity=0.230 Sum_probs=22.7
Q ss_pred CccEEEEecccccc-cCCCHHHHHHHHHHcCCCcceEEE
Q 013176 174 RVTYLVLDEADRML-DMGFEPQIRKIVTQIRPDRQTLYW 211 (448)
Q Consensus 174 ~~~~iIvDE~h~~~-~~~~~~~~~~~~~~~~~~~~~v~~ 211 (448)
...++++||+|.+. .. ....+..++...+....+++.
T Consensus 105 ~~~vliiDEi~~l~~~~-~~~~L~~~le~~~~~~~iI~~ 142 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAE-SQRHLRSFMEAYSSNCSIIIT 142 (324)
T ss_dssp CEEEEEEESCCCGGGHH-HHHHHHHHHHHHGGGCEEEEE
T ss_pred CCeEEEEECCcccCcHH-HHHHHHHHHHhCCCCcEEEEE
Confidence 57899999999986 32 234444555544445555543
No 137
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.41 E-value=0.061 Score=50.24 Aligned_cols=17 Identities=29% Similarity=0.284 Sum_probs=14.7
Q ss_pred CcEEEEcCCCChHHHHH
Q 013176 65 RDLIGIAETGSGKTLSY 81 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~ 81 (448)
..+++.||+|+|||..+
T Consensus 46 ~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 46999999999999764
No 138
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.32 E-value=0.036 Score=51.87 Aligned_cols=16 Identities=25% Similarity=0.439 Sum_probs=14.1
Q ss_pred cEEEEcCCCChHHHHH
Q 013176 66 DLIGIAETGSGKTLSY 81 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~~ 81 (448)
.+++.||+|+|||..+
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 6899999999999753
No 139
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.31 E-value=0.094 Score=49.64 Aligned_cols=129 Identities=19% Similarity=0.118 Sum_probs=60.9
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEc-C-cHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHh
Q 013176 66 DLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLA-P-TRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQ 143 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~-P-~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (448)
-+++++++|+|||.+..- +..++... +.+++++. . .+.-+ .++++.+....++.+.....+.
T Consensus 102 vIlivG~~G~GKTTt~~k-LA~~l~~~-------G~kVllv~~D~~R~aa---~eqL~~~~~~~gvpv~~~~~~~----- 165 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAK-LARYFQKR-------GYKVGVVCSDTWRPGA---YHQLRQLLDRYHIEVFGNPQEK----- 165 (443)
T ss_dssp EEEEECCTTSSHHHHHHH-HHHHHHTT-------TCCEEEEECCCSSTHH---HHHHHHHHGGGTCEEECCTTCC-----
T ss_pred EEEEECcCCCCHHHHHHH-HHHHHHHC-------CCeEEEEeCCCcchhH---HHHHHHHHHhcCCcEEecCCCC-----
Confidence 467789999999986443 33333332 44455544 2 33322 3444455444555443221111
Q ss_pred HHHHhcCCcEEEEccHHHH-HHHHccccCCCCccEEEEecccccccC-CCHHHHHHHHHHcCCCcceEEEeccCchHHHH
Q 013176 144 IRDLRRGVEIVIATPGRLI-DMLEAQHTNLRRVTYLVLDEADRMLDM-GFEPQIRKIVTQIRPDRQTLYWSATWPREVET 221 (448)
Q Consensus 144 ~~~~~~~~~iiv~T~~~l~-~~~~~~~~~~~~~~~iIvDE~h~~~~~-~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~ 221 (448)
.|..+. +.+... ....++++|||.+=+.... ..-..+..+.....+..-++.+.|+...+...
T Consensus 166 -------------dp~~i~~~al~~a--~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~ 230 (443)
T 3dm5_A 166 -------------DAIKLAKEGVDYF--KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYN 230 (443)
T ss_dssp -------------CHHHHHHHHHHHH--HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHH
T ss_pred -------------CHHHHHHHHHHHH--HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHH
Confidence 111111 111110 1123677888877543221 12233444455555555666677775544444
Q ss_pred HHHH
Q 013176 222 LARQ 225 (448)
Q Consensus 222 ~~~~ 225 (448)
.+..
T Consensus 231 ~a~~ 234 (443)
T 3dm5_A 231 QALA 234 (443)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 140
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.21 E-value=0.17 Score=47.15 Aligned_cols=54 Identities=17% Similarity=0.168 Sum_probs=31.4
Q ss_pred cccccccCCCCHHHHHHHHHC---CCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHH
Q 013176 25 PIRIFQEANFPDYCLEVIAKL---GFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSY 81 (448)
Q Consensus 25 p~~~~~~~~l~~~l~~~~~~~---~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~ 81 (448)
|-.+|++.+=-+...+.++.. ++..|--++.- .+...+.+|+.||+|+|||+.+
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~---gi~~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESL---GIAQPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHH---TCCCCCCEEEESCSSSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhC---CCCCCCceEEeCCCCCCHHHHH
Confidence 557888875445555555431 22222222211 1223468999999999999863
No 141
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=94.87 E-value=0.083 Score=47.99 Aligned_cols=39 Identities=15% Similarity=0.275 Sum_probs=23.3
Q ss_pred CCccEEEEecccccccCCCHHHHHHHHHHcCCCcceEEEe
Q 013176 173 RRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWS 212 (448)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~S 212 (448)
....++|+||+|.+.... ...+..++...+....+++.+
T Consensus 109 ~~~~vliiDe~~~l~~~~-~~~L~~~le~~~~~~~~i~~~ 147 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQDA-QQALRRTMEMFSSNVRFILSC 147 (327)
T ss_dssp CSCEEEEEETGGGSCHHH-HHHHHHHHHHTTTTEEEEEEE
T ss_pred CCCeEEEEeCCCcCCHHH-HHHHHHHHHhcCCCCeEEEEe
Confidence 346799999999875432 334445555544455555443
No 142
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.85 E-value=0.053 Score=48.99 Aligned_cols=18 Identities=28% Similarity=0.276 Sum_probs=15.2
Q ss_pred CcEEEEcCCCChHHHHHH
Q 013176 65 RDLIGIAETGSGKTLSYL 82 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~ 82 (448)
.++++.||+|+|||..+-
T Consensus 68 ~~vll~G~~GtGKT~la~ 85 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVAL 85 (309)
T ss_dssp CEEEEEECTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 469999999999997643
No 143
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.76 E-value=0.095 Score=48.02 Aligned_cols=17 Identities=24% Similarity=0.208 Sum_probs=14.9
Q ss_pred CcEEEEcCCCChHHHHH
Q 013176 65 RDLIGIAETGSGKTLSY 81 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~ 81 (448)
.++++.||+|+|||..+
T Consensus 56 ~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLA 72 (338)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 47999999999999764
No 144
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.69 E-value=0.079 Score=49.36 Aligned_cols=18 Identities=28% Similarity=0.313 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCChHHHHH
Q 013176 64 GRDLIGIAETGSGKTLSY 81 (448)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~ 81 (448)
+..+++.||+|+|||..+
T Consensus 45 ~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCEEEEECTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 457999999999999753
No 145
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.68 E-value=0.48 Score=40.43 Aligned_cols=16 Identities=25% Similarity=0.158 Sum_probs=13.8
Q ss_pred cEEEEcCCCChHHHHH
Q 013176 66 DLIGIAETGSGKTLSY 81 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~~ 81 (448)
.+++.||+|+|||..+
T Consensus 47 ~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIA 62 (250)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5889999999999753
No 146
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=94.59 E-value=0.14 Score=48.45 Aligned_cols=79 Identities=14% Similarity=0.139 Sum_probs=63.2
Q ss_pred hcCCcEEEEecchhHHHHHHHHHHh---CCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEecc-cc---CCCCCCCcc
Q 013176 270 MDGSRILIFTETKKGCDQVTRQLRM---DGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDV-AA---RGLDVKDIK 342 (448)
Q Consensus 270 ~~~~k~lVf~~~~~~~~~l~~~L~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~-~~---~Gidi~~~~ 342 (448)
..+.++||.++++.-+.++++.+++ .++++..++|+.+..++....+.+..++.+|+|+|.- +. .-++...++
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~ 141 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFD 141 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCS
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhcccccc
Confidence 4577999999999999999999988 5789999999999998888899999898999999932 21 114445667
Q ss_pred EEEEcC
Q 013176 343 CVVNYD 348 (448)
Q Consensus 343 ~Vi~~~ 348 (448)
+||.=.
T Consensus 142 ~iViDE 147 (414)
T 3oiy_A 142 FVFVDD 147 (414)
T ss_dssp EEEESC
T ss_pred EEEEeC
Confidence 766433
No 147
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.54 E-value=0.57 Score=43.27 Aligned_cols=18 Identities=28% Similarity=0.446 Sum_probs=15.3
Q ss_pred CcEEEEcCCCChHHHHHH
Q 013176 65 RDLIGIAETGSGKTLSYL 82 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~ 82 (448)
+.+++.||+|+|||..+.
T Consensus 71 ~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp CEEEEEESTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 579999999999997643
No 148
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=94.40 E-value=0.089 Score=50.25 Aligned_cols=18 Identities=28% Similarity=0.257 Sum_probs=15.0
Q ss_pred CcEEEEcCCCChHHHHHH
Q 013176 65 RDLIGIAETGSGKTLSYL 82 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~ 82 (448)
.+++++||+|+|||..+-
T Consensus 51 ~~vLL~GppGtGKTtlAr 68 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAE 68 (447)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 468999999999997643
No 149
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.27 E-value=0.21 Score=43.21 Aligned_cols=51 Identities=16% Similarity=0.150 Sum_probs=29.7
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013176 63 KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALK 122 (448)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~ 122 (448)
.+.-+++.+|+|+|||..++-.+...+.. +..++++.... -..++.+.+..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~--------~~~v~~~~~e~-~~~~~~~~~~~ 72 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKM--------GEPGIYVALEE-HPVQVRQNMAQ 72 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHT--------TCCEEEEESSS-CHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhc--------CCeEEEEEccC-CHHHHHHHHHH
Confidence 45678899999999997644333332222 34567765432 23455555544
No 150
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.23 E-value=0.15 Score=46.81 Aligned_cols=39 Identities=18% Similarity=0.218 Sum_probs=23.6
Q ss_pred CCccEEEEecccccccCCCHHHHHHHHHHcCCCcceEEEe
Q 013176 173 RRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWS 212 (448)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~S 212 (448)
....++++||+|.+.... ...+..++...+....+++.+
T Consensus 132 ~~~~vliiDE~~~l~~~~-~~~Ll~~le~~~~~~~~il~~ 170 (353)
T 1sxj_D 132 PPYKIIILDEADSMTADA-QSALRRTMETYSGVTRFCLIC 170 (353)
T ss_dssp CSCEEEEETTGGGSCHHH-HHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEECCCccCHHH-HHHHHHHHHhcCCCceEEEEe
Confidence 346799999999875432 334445555544455555544
No 151
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.19 E-value=0.26 Score=45.36 Aligned_cols=42 Identities=10% Similarity=0.272 Sum_probs=26.3
Q ss_pred CCccEEEEecccccccCCCHHHHHHHHHHcCCCcceEEEeccC
Q 013176 173 RRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWSATW 215 (448)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~ 215 (448)
.+..++|+||+|.+ +......+..++...++...+++.|-.+
T Consensus 133 ~~~~vlilDE~~~L-~~~~~~~L~~~le~~~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 133 HRYKCVIINEANSL-TKDAQAALRRTMEKYSKNIRLIMVCDSM 174 (354)
T ss_dssp -CCEEEEEECTTSS-CHHHHHHHHHHHHHSTTTEEEEEEESCS
T ss_pred CCCeEEEEeCcccc-CHHHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence 35779999999984 3333455666666655555566555443
No 152
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.14 E-value=0.32 Score=46.46 Aligned_cols=116 Identities=18% Similarity=0.049 Sum_probs=54.6
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchH
Q 013176 63 KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGP 142 (448)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (448)
.+.-+++.|++|+|||..++-.+....... +..++++..- .-..|+..++.......... .+..+.-...
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~~-------g~~vl~~slE-~~~~~l~~R~~~~~~~i~~~--~l~~g~l~~~ 268 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALKE-------GVGVGIYSLE-MPAAQLTLRMMCSEARIDMN--RVRLGQLTDR 268 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTT-------CCCEEEEESS-SCHHHHHHHHHHHHTTCCTT--TCCGGGCCHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhC-------CCeEEEEECC-CCHHHHHHHHHHHHcCCCHH--HHhCCCCCHH
Confidence 345678889999999965443333333221 3457776542 22344454443211111110 0111111222
Q ss_pred hHHHHh------cCCcEEEE-----ccHHHHHHHHccccCCCCccEEEEecccccccC
Q 013176 143 QIRDLR------RGVEIVIA-----TPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDM 189 (448)
Q Consensus 143 ~~~~~~------~~~~iiv~-----T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~ 189 (448)
++..+. ...++.+- |.+.+...+..... -..+++||||..+.+...
T Consensus 269 ~~~~~~~a~~~l~~~~l~i~d~~~~s~~~l~~~~~~l~~-~~~~~lIvID~l~~~~~~ 325 (444)
T 2q6t_A 269 DFSRLVDVASRLSEAPIYIDDTPDLTLMEVRARARRLVS-QNQVGLIIIDYLQLMSGP 325 (444)
T ss_dssp HHHHHHHHHHHHHTSCEEEECCTTCBHHHHHHHHHHHHH-HSCCCEEEEECGGGCBCC
T ss_pred HHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH-HcCCCEEEEcChhhcCCC
Confidence 222211 12346554 33444433332111 124789999999988643
No 153
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=94.14 E-value=0.22 Score=53.52 Aligned_cols=78 Identities=18% Similarity=0.209 Sum_probs=66.0
Q ss_pred hhhcCCcEEEEecchhHHHHHHHHHHhC----CCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEe-ccccCCCCCCCcc
Q 013176 268 EVMDGSRILIFTETKKGCDQVTRQLRMD----GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTAT-DVAARGLDVKDIK 342 (448)
Q Consensus 268 ~~~~~~k~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T-~~~~~Gidi~~~~ 342 (448)
....+.+++|.|++..-+.+.++.+++. ++++..+++..+..++...++.+.+|..+|+|+| ..+...+++.++.
T Consensus 648 ~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~ 727 (1151)
T 2eyq_A 648 AVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLG 727 (1151)
T ss_dssp HHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEE
T ss_pred HHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccc
Confidence 3445779999999999999888888653 5778999999999999999999999999999999 5566678888888
Q ss_pred EEE
Q 013176 343 CVV 345 (448)
Q Consensus 343 ~Vi 345 (448)
+||
T Consensus 728 lvI 730 (1151)
T 2eyq_A 728 LLI 730 (1151)
T ss_dssp EEE
T ss_pred eEE
Confidence 777
No 154
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.12 E-value=0.32 Score=45.53 Aligned_cols=19 Identities=32% Similarity=0.440 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 013176 64 GRDLIGIAETGSGKTLSYL 82 (448)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~ 82 (448)
..++++.||+|+|||..+-
T Consensus 148 ~~~vLL~GppGtGKT~la~ 166 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAK 166 (389)
T ss_dssp CSEEEEESSTTSCHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3689999999999997643
No 155
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.92 E-value=0.48 Score=45.35 Aligned_cols=39 Identities=21% Similarity=0.073 Sum_probs=24.0
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcC
Q 013176 63 KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAP 108 (448)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P 108 (448)
.+.-+++.|++|+|||..++-.+....... +..++|+..
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~-------g~~Vl~~s~ 240 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKT-------NENVAIFSL 240 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHS-------SCCEEEEES
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhC-------CCcEEEEEC
Confidence 445678889999999965443333333221 335777754
No 156
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=93.67 E-value=0.41 Score=44.31 Aligned_cols=16 Identities=25% Similarity=0.158 Sum_probs=13.7
Q ss_pred cEEEEcCCCChHHHHH
Q 013176 66 DLIGIAETGSGKTLSY 81 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~~ 81 (448)
.+++.||.|+|||..+
T Consensus 40 ~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIA 55 (373)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999764
No 157
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=93.52 E-value=0.22 Score=45.96 Aligned_cols=18 Identities=17% Similarity=0.252 Sum_probs=15.4
Q ss_pred CcEEEEcCCCChHHHHHH
Q 013176 65 RDLIGIAETGSGKTLSYL 82 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~ 82 (448)
+++++.||+|+|||+.+-
T Consensus 85 ~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp CCEEEECSTTSCHHHHHH
T ss_pred ceEEEECCCCCcHHHHHH
Confidence 579999999999998643
No 158
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=93.49 E-value=0.27 Score=41.96 Aligned_cols=21 Identities=33% Similarity=0.347 Sum_probs=16.2
Q ss_pred hcCCcEEEEcCCCChHHHHHH
Q 013176 62 LKGRDLIGIAETGSGKTLSYL 82 (448)
Q Consensus 62 ~~~~~~lv~~~tGsGKT~~~~ 82 (448)
..+.-+++.+|+|+|||..+.
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~ 41 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSL 41 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHH
Confidence 345678889999999996543
No 159
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.46 E-value=0.17 Score=49.39 Aligned_cols=41 Identities=12% Similarity=0.133 Sum_probs=25.1
Q ss_pred CCccEEEEecccccccCCC--HHHHHHHHHHcCCCcceEEEeccC
Q 013176 173 RRVTYLVLDEADRMLDMGF--EPQIRKIVTQIRPDRQTLYWSATW 215 (448)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~~--~~~~~~~~~~~~~~~~~v~~SAT~ 215 (448)
....+|++||+|.+..... ...+..++.. ....+++++++.
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~ 189 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNER 189 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcCC
Confidence 3457999999999866432 2344444433 345577777664
No 160
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.42 E-value=0.22 Score=45.60 Aligned_cols=39 Identities=18% Similarity=0.408 Sum_probs=24.5
Q ss_pred CCccEEEEecccccccCCCHHHHHHHHHHcCCCcceEEEe
Q 013176 173 RRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWS 212 (448)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~S 212 (448)
....++|+||+|.+.... ...+..++...+....+++.+
T Consensus 109 ~~~~viiiDe~~~l~~~~-~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNAA-QNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGGGSCHHH-HHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEeCCCCCCHHH-HHHHHHHHhcCCCCeEEEEEe
Confidence 347899999999875432 344555566555555555443
No 161
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=93.41 E-value=0.39 Score=46.16 Aligned_cols=76 Identities=12% Similarity=0.023 Sum_probs=51.3
Q ss_pred HHHHHHHHHhhhcCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEeccccCCCCC
Q 013176 259 YNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDVAARGLDV 338 (448)
Q Consensus 259 ~~~l~~~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi 338 (448)
+..+..+++. .+.++++.|.+...++.+.+.|.+.++.+...... . .+. ...|.++...+..|+.+
T Consensus 371 ~~~L~~~~~~--~~~rVvi~a~s~~r~erL~~~L~~~~i~~~~~~~~-~---------~~~--~g~v~i~~g~L~~GF~~ 436 (483)
T 3hjh_A 371 LDALRKFLET--FDGPVVFSVESEGRREALGELLARIKIAPQRIMRL-D---------EAS--DRGRYLMIGAAEHGFVD 436 (483)
T ss_dssp THHHHHHHHH--CCSCEEEEESCSSTTTTTHHHHGGGTCCCEECSCG-G---------GCC--TTCEEEEESCCCSCEEE
T ss_pred HHHHHHHHHh--CCCeEEEEeCChHHHHHHHHHHHHcCCCceecCch-h---------hcC--CCcEEEEEcccccCccc
Confidence 3445555532 35689999999999999999998887765443221 1 122 23577777788899998
Q ss_pred CCccEEEEcC
Q 013176 339 KDIKCVVNYD 348 (448)
Q Consensus 339 ~~~~~Vi~~~ 348 (448)
|..+.+|+.+
T Consensus 437 p~~klaVITE 446 (483)
T 3hjh_A 437 TVRNLALICE 446 (483)
T ss_dssp TTTTEEEEEH
T ss_pred CCCCEEEEEc
Confidence 8888877654
No 162
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=93.37 E-value=0.26 Score=44.32 Aligned_cols=39 Identities=10% Similarity=0.162 Sum_probs=23.2
Q ss_pred CCccEEEEecccccccCCCHHHHHHHHHHcCCCcceEEEe
Q 013176 173 RRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWS 212 (448)
Q Consensus 173 ~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~S 212 (448)
....++|+||+|.+.... .+.+.+.++..++...+++.|
T Consensus 81 ~~~kvviIdead~lt~~a-~naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 81 YTRKYVIVHDCERMTQQA-ANAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp SSSEEEEETTGGGBCHHH-HHHTHHHHHSCCTTEEEEEEE
T ss_pred CCceEEEeccHHHhCHHH-HHHHHHHHhCCCCCeEEEEEE
Confidence 457899999999985432 234444454433444444444
No 163
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=93.30 E-value=0.094 Score=50.12 Aligned_cols=18 Identities=22% Similarity=0.338 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCChHHHHH
Q 013176 64 GRDLIGIAETGSGKTLSY 81 (448)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~ 81 (448)
.+.+++.||+|+|||..+
T Consensus 167 ~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CSEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 367999999999999764
No 164
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.71 E-value=0.22 Score=45.02 Aligned_cols=38 Identities=18% Similarity=0.290 Sum_probs=22.5
Q ss_pred CccEEEEecccccccCCCHHHHHHHHHHcCCCcceEEEe
Q 013176 174 RVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQTLYWS 212 (448)
Q Consensus 174 ~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~S 212 (448)
...++|+||+|.+.... ...+..++...+....+++.|
T Consensus 107 ~~~viiiDe~~~l~~~~-~~~L~~~le~~~~~~~~il~~ 144 (323)
T 1sxj_B 107 KHKIVILDEADSMTAGA-QQALRRTMELYSNSTRFAFAC 144 (323)
T ss_dssp CCEEEEEESGGGSCHHH-HHTTHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEECcccCCHHH-HHHHHHHHhccCCCceEEEEe
Confidence 36799999999875432 233444444444455555544
No 165
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=92.52 E-value=4.7 Score=36.54 Aligned_cols=29 Identities=10% Similarity=0.035 Sum_probs=19.6
Q ss_pred cHHHHhHHHHhhcCCcEEEEcCCCChHHHH
Q 013176 51 TPIQAQGWPMALKGRDLIGIAETGSGKTLS 80 (448)
Q Consensus 51 ~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~ 80 (448)
|.-+.+.+.. +....++|.||.|+|||..
T Consensus 18 R~~el~~L~~-l~~~~v~i~G~~G~GKT~L 46 (357)
T 2fna_A 18 REKEIEKLKG-LRAPITLVLGLRRTGKSSI 46 (357)
T ss_dssp CHHHHHHHHH-TCSSEEEEEESTTSSHHHH
T ss_pred hHHHHHHHHH-hcCCcEEEECCCCCCHHHH
Confidence 4444444444 4335788899999999975
No 166
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=92.51 E-value=0.18 Score=45.76 Aligned_cols=17 Identities=29% Similarity=0.305 Sum_probs=14.9
Q ss_pred CcEEEEcCCCChHHHHH
Q 013176 65 RDLIGIAETGSGKTLSY 81 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~ 81 (448)
..+++.||+|+|||..+
T Consensus 39 ~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCEEECCTTCCCHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 67999999999999754
No 167
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=92.47 E-value=0.4 Score=51.30 Aligned_cols=79 Identities=14% Similarity=0.155 Sum_probs=64.1
Q ss_pred hcCCcEEEEecchhHHHHHHHHHHh---CCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEec-cccC---CCCCCCcc
Q 013176 270 MDGSRILIFTETKKGCDQVTRQLRM---DGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD-VAAR---GLDVKDIK 342 (448)
Q Consensus 270 ~~~~k~lVf~~~~~~~~~l~~~L~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-~~~~---Gidi~~~~ 342 (448)
..+.++||.+++++-|.++++.+++ .++.+..++|+.+..++...++.+.++..+|+|+|. .+.. -+++.+++
T Consensus 119 ~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~ 198 (1104)
T 4ddu_A 119 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFD 198 (1104)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCS
T ss_pred hcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcC
Confidence 4577899999999999999999988 467899999999998888999999999999999993 2211 14456777
Q ss_pred EEEEcC
Q 013176 343 CVVNYD 348 (448)
Q Consensus 343 ~Vi~~~ 348 (448)
+||.=.
T Consensus 199 ~lViDE 204 (1104)
T 4ddu_A 199 FVFVDD 204 (1104)
T ss_dssp EEEESC
T ss_pred EEEEeC
Confidence 777544
No 168
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=92.43 E-value=0.16 Score=46.32 Aligned_cols=117 Identities=16% Similarity=0.064 Sum_probs=55.9
Q ss_pred hhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCc
Q 013176 61 ALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPK 140 (448)
Q Consensus 61 ~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (448)
+..+.-+++.|++|+|||..+ +.++..+... +..++|+..- .-..|+..++.......+.. .+..+.-.
T Consensus 43 l~~G~LiiIaG~pG~GKTt~a-l~ia~~~a~~-------g~~Vl~fSlE-ms~~ql~~Rlls~~~~v~~~--~l~~g~Ls 111 (338)
T 4a1f_A 43 FNKGSLVIIGARPSMGKTSLM-MNMVLSALND-------DRGVAVFSLE-MSAEQLALRALSDLTSINMH--DLESGRLD 111 (338)
T ss_dssp BCTTCEEEEEECTTSCHHHHH-HHHHHHHHHT-------TCEEEEEESS-SCHHHHHHHHHHHHHCCCHH--HHHHTCCC
T ss_pred CCCCcEEEEEeCCCCCHHHHH-HHHHHHHHHc-------CCeEEEEeCC-CCHHHHHHHHHHHhhCCCHH--HHhcCCCC
Confidence 344556788899999999654 3343333332 5567777552 23445555543221111110 00111112
Q ss_pred hHhHHHHh------cCCcEEEE-c----cHHHHHHHHccccCCCCccEEEEeccccccc
Q 013176 141 GPQIRDLR------RGVEIVIA-T----PGRLIDMLEAQHTNLRRVTYLVLDEADRMLD 188 (448)
Q Consensus 141 ~~~~~~~~------~~~~iiv~-T----~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~ 188 (448)
..++.++. ...++.|- + ++.+...+.+.......+++||||-.+.+..
T Consensus 112 ~~e~~~l~~a~~~l~~~~l~I~d~~~~si~~i~~~ir~l~~~~gg~~lIVIDyLqlm~~ 170 (338)
T 4a1f_A 112 DDQWENLAKCFDHLSQKKLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFIDYLQLMSG 170 (338)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEECCTTCCHHHHHHHHHHHHHHCTTEEEEEEEEEECCCT
T ss_pred HHHHHHHHHHHHHHhcCCeEEeCCCCCcHHHHHHHHHHHHHhcCCCCEEEEechHHhcC
Confidence 22232221 12345553 3 3334333332211112588999999998753
No 169
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=92.14 E-value=1 Score=32.28 Aligned_cols=51 Identities=16% Similarity=0.346 Sum_probs=42.8
Q ss_pred EEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCE
Q 013176 275 ILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPI 325 (448)
Q Consensus 275 ~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~v 325 (448)
.+||.+..+-...+.+.++..|..+.+++++.+.+.|.+.++.|.....+|
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvdv 55 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVDV 55 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCEE
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCce
Confidence 357777778888889999999999999999999999999999998654443
No 170
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=91.82 E-value=0.28 Score=47.33 Aligned_cols=18 Identities=33% Similarity=0.449 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCChHHHHH
Q 013176 64 GRDLIGIAETGSGKTLSY 81 (448)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~ 81 (448)
..++++.||+|+|||+.+
T Consensus 238 ~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CCcEEEECcCCCCHHHHH
Confidence 357999999999999864
No 171
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.72 E-value=0.16 Score=47.97 Aligned_cols=55 Identities=16% Similarity=0.242 Sum_probs=35.4
Q ss_pred CcccccccCCCCHHHHHHHHHC---CCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHH
Q 013176 24 RPIRIFQEANFPDYCLEVIAKL---GFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSY 81 (448)
Q Consensus 24 ~p~~~~~~~~l~~~l~~~~~~~---~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~ 81 (448)
.|..+|++.+-.+...+.+... ++..|-.++..- +...+.+|+.||+|+|||+.+
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g---~~~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMG---IRAPKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHC---CCCCCEEEEESCTTSSHHHHH
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCeeEEECcCCCCHHHHH
Confidence 5677899987777777776542 222333333211 223468999999999999763
No 172
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=91.59 E-value=0.2 Score=40.76 Aligned_cols=122 Identities=13% Similarity=0.135 Sum_probs=70.9
Q ss_pred CcHHHHhHHHHhhcCC--cEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCC
Q 013176 50 PTPIQAQGWPMALKGR--DLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRA 127 (448)
Q Consensus 50 ~~~~Q~~~i~~~~~~~--~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~ 127 (448)
..+-|..++..++... -.++.+.-|++|+...+..++...... +..|.+|+|+..-...+.+....-.
T Consensus 35 ~~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~~-------Gr~V~vLAp~~~s~~~l~~~~~l~~--- 104 (189)
T 2l8b_A 35 RTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAREQ-------GREVQIIAADRRSQMNMKQDERLSG--- 104 (189)
T ss_dssp CHHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHHT-------TCCEEEECSTTHHHHHHSCTTTCSS---
T ss_pred cCccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHhc-------CeEEEEEcCchHHHHHHHhhcCcCc---
Confidence 3467889998887543 456669999999987555555544443 7789999998765443322221100
Q ss_pred CceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEEEecccccccCCCHHHHHHHHHHcCCCcc
Q 013176 128 GIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRPDRQ 207 (448)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~~~~ 207 (448)
+++ |- ..+......+..-+.+||||+-.+.. .+.+..+-.....+.|
T Consensus 105 ------------------------~t~--t~----~~ll~~~~~~tp~s~lIVD~AekLS~---kE~~~Lld~A~~~naq 151 (189)
T 2l8b_A 105 ------------------------ELI--TG----RRQLLEGMAFTPGSTVIVDQGEKLSL---KETLTLLDGAARHNVQ 151 (189)
T ss_dssp ------------------------CSS--ST----TTTTTTSCCCCCCCEEEEEESSSHHH---HHHHHHHHHHHHTTCC
T ss_pred ------------------------cee--eh----hhhhcCCCCCCCCCEEEEechhhcCH---HHHHHHHHHHHhcCCE
Confidence 001 11 11222223334556999999998753 2223333333346678
Q ss_pred eEEEecc
Q 013176 208 TLYWSAT 214 (448)
Q Consensus 208 ~v~~SAT 214 (448)
+|++--+
T Consensus 152 vvll~~~ 158 (189)
T 2l8b_A 152 VLITDSG 158 (189)
T ss_dssp EEEEESS
T ss_pred EEEeCCc
Confidence 8777544
No 173
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=91.47 E-value=0.41 Score=44.93 Aligned_cols=17 Identities=35% Similarity=0.382 Sum_probs=14.0
Q ss_pred CcEEE--EcCCCChHHHHH
Q 013176 65 RDLIG--IAETGSGKTLSY 81 (448)
Q Consensus 65 ~~~lv--~~~tGsGKT~~~ 81 (448)
..+++ .||.|+|||...
T Consensus 51 ~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp EEEEEECTTCCSSSHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHH
Confidence 46788 899999999753
No 174
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=91.38 E-value=0.41 Score=48.98 Aligned_cols=57 Identities=16% Similarity=0.134 Sum_probs=35.3
Q ss_pred CCCCcccccccCCCCHHHHHHHHHC---CCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHH
Q 013176 21 DVPRPIRIFQEANFPDYCLEVIAKL---GFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLS 80 (448)
Q Consensus 21 ~~~~p~~~~~~~~l~~~l~~~~~~~---~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~ 80 (448)
....|..+|++.+--+...+.++.. .+..|..++.- .+...+.+|+.+|+|+|||+.
T Consensus 468 ~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~---g~~~~~gvLl~GPPGtGKT~l 527 (806)
T 3cf2_A 468 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKF---GMTPSKGVLFYGPPGCGKTLL 527 (806)
T ss_dssp CCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSS---CCCCCSCCEEESSTTSSHHHH
T ss_pred cccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhc---CCCCCceEEEecCCCCCchHH
Confidence 3446778899988777777777652 22222211110 012235799999999999975
No 175
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.31 E-value=0.43 Score=53.59 Aligned_cols=38 Identities=21% Similarity=0.116 Sum_probs=27.1
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCc
Q 013176 64 GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPT 109 (448)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~ 109 (448)
++++++.+|+|+|||..+...+...... +.+++|+...
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ea~~~--------G~~v~Fi~~e 1464 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAAAQRE--------GKTCAFIDAE 1464 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHTT--------TCCEEEECTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--------CCcEEEEEcc
Confidence 5789999999999998765444433322 5568888764
No 176
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=91.31 E-value=0.87 Score=44.44 Aligned_cols=60 Identities=12% Similarity=0.163 Sum_probs=55.3
Q ss_pred cCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEec
Q 013176 271 DGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD 330 (448)
Q Consensus 271 ~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~ 330 (448)
..+++||+++++.-+....+.|++.++.+..+++..+..++..++..+..+..+++++|.
T Consensus 64 ~~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 64 LNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred hCCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 457899999999999999999999999999999999999999999999999999999993
No 177
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=91.30 E-value=0.35 Score=47.49 Aligned_cols=18 Identities=33% Similarity=0.209 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCChHHHHH
Q 013176 64 GRDLIGIAETGSGKTLSY 81 (448)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~ 81 (448)
+..+++.+|+|+|||..+
T Consensus 108 g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp SCEEEEESSSSSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 567999999999999753
No 178
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=90.90 E-value=0.21 Score=39.32 Aligned_cols=21 Identities=10% Similarity=0.029 Sum_probs=17.1
Q ss_pred hcCCcEEEEcCCCChHHHHHH
Q 013176 62 LKGRDLIGIAETGSGKTLSYL 82 (448)
Q Consensus 62 ~~~~~~lv~~~tGsGKT~~~~ 82 (448)
..+.++++.+|+|+|||..+-
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~ 42 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGAR 42 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHH
Confidence 355789999999999997643
No 179
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=90.68 E-value=3 Score=34.32 Aligned_cols=73 Identities=21% Similarity=0.340 Sum_probs=52.6
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHH---HHh-cCCcEEEEccHHHHHHHHccccCCCCc
Q 013176 100 GPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIR---DLR-RGVEIVIATPGRLIDMLEAQHTNLRRV 175 (448)
Q Consensus 100 ~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~ 175 (448)
+.++||.|+++.-+..+.+.++.. ++.+..++|+.+..+... .+. ....|+|+| +.+. ..+++.++
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT-----~~~~-~Gldi~~v 123 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT-----DVAS-KGLDFPAI 123 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC-----HHHH-TTCCCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEc-----Cchh-cCCCcccC
Confidence 346999999999999999988875 677888998876644432 222 357899999 3333 34577778
Q ss_pred cEEEEec
Q 013176 176 TYLVLDE 182 (448)
Q Consensus 176 ~~iIvDE 182 (448)
+++|.-+
T Consensus 124 ~~VI~~d 130 (191)
T 2p6n_A 124 QHVINYD 130 (191)
T ss_dssp SEEEESS
T ss_pred CEEEEeC
Confidence 8777633
No 180
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=90.65 E-value=2.1 Score=37.03 Aligned_cols=73 Identities=21% Similarity=0.283 Sum_probs=52.8
Q ss_pred CCcEEEEecchhHHHHHHHHHHhC----CCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEec-cc------cCCCCCCC
Q 013176 272 GSRILIFTETKKGCDQVTRQLRMD----GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD-VA------ARGLDVKD 340 (448)
Q Consensus 272 ~~k~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-~~------~~Gidi~~ 340 (448)
+.++||.+++++-+.++++.+++. ++.+..++|+.+.......+ .+..+|+|+|. .+ ...+++..
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~~ 186 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLRA 186 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCccc
Confidence 457999999999999888877654 78889999988865543332 24679999993 11 14567778
Q ss_pred ccEEEEcC
Q 013176 341 IKCVVNYD 348 (448)
Q Consensus 341 ~~~Vi~~~ 348 (448)
+++||.=.
T Consensus 187 ~~~lViDE 194 (249)
T 3ber_A 187 LKYLVMDE 194 (249)
T ss_dssp CCEEEECS
T ss_pred cCEEEEcC
Confidence 88777543
No 181
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=90.57 E-value=1.2 Score=37.50 Aligned_cols=74 Identities=14% Similarity=0.169 Sum_probs=53.9
Q ss_pred CCcEEEEecchhHHHHHHHHHHhC-----CCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEecc-c-----cCCCCCCC
Q 013176 272 GSRILIFTETKKGCDQVTRQLRMD-----GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDV-A-----ARGLDVKD 340 (448)
Q Consensus 272 ~~k~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~-~-----~~Gidi~~ 340 (448)
+.++||.+++++-+.++++.+++. +..+..++|+.+..+... .+.++..+|+|+|.- + ...+++..
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~ 158 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNLKH 158 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHH---HHhcCCCCEEEeCHHHHHHHHHhCCCCccc
Confidence 348999999999999988887664 678899999988665443 344567799999932 1 23456777
Q ss_pred ccEEEEcC
Q 013176 341 IKCVVNYD 348 (448)
Q Consensus 341 ~~~Vi~~~ 348 (448)
++++|.=.
T Consensus 159 ~~~lViDE 166 (220)
T 1t6n_A 159 IKHFILDE 166 (220)
T ss_dssp CCEEEEES
T ss_pred CCEEEEcC
Confidence 88777543
No 182
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=90.47 E-value=0.24 Score=45.49 Aligned_cols=38 Identities=26% Similarity=0.244 Sum_probs=24.0
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcC
Q 013176 63 KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAP 108 (448)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P 108 (448)
.+.-+++.+|+|+|||..++-.+.. +... +.+++|+..
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~-~~~~-------g~~vlyi~~ 97 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVAN-AQAA-------GGIAAFIDA 97 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH-HHHT-------TCCEEEEES
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH-HHhC-------CCeEEEEEC
Confidence 3456888899999999764433333 3221 445777754
No 183
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=90.46 E-value=1.3 Score=37.83 Aligned_cols=21 Identities=24% Similarity=0.063 Sum_probs=16.6
Q ss_pred cCCcEEEEcCCCChHHHHHHH
Q 013176 63 KGRDLIGIAETGSGKTLSYLL 83 (448)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~~l 83 (448)
.+.-+++.+|+|+|||..+..
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~ 43 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHT 43 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHH
Confidence 456788999999999976443
No 184
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=90.38 E-value=0.19 Score=39.42 Aligned_cols=19 Identities=16% Similarity=0.048 Sum_probs=16.2
Q ss_pred hcCCcEEEEcCCCChHHHH
Q 013176 62 LKGRDLIGIAETGSGKTLS 80 (448)
Q Consensus 62 ~~~~~~lv~~~tGsGKT~~ 80 (448)
....++++.+|+|+|||..
T Consensus 25 ~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp TCSSCEEEEEETTCCHHHH
T ss_pred CCCCcEEEECCCCccHHHH
Confidence 4457899999999999974
No 185
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=90.18 E-value=0.98 Score=44.78 Aligned_cols=60 Identities=15% Similarity=0.206 Sum_probs=54.2
Q ss_pred cCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHH--hcCCCCEEEEec
Q 013176 271 DGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEF--RSGRSPIMTATD 330 (448)
Q Consensus 271 ~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f--~~g~~~vLv~T~ 330 (448)
..+++||+++++.-+....+.|++.++.+..++++.+..++..++..+ ..+..+|+++|.
T Consensus 83 ~~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 83 SDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred cCCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 456899999999999999999999999999999999999998888888 467899999995
No 186
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=90.10 E-value=4.3 Score=36.06 Aligned_cols=45 Identities=16% Similarity=0.201 Sum_probs=24.2
Q ss_pred CCccEEEEeccccccc-CCCHHHHHHHHHHcCCCcceEEEeccCch
Q 013176 173 RRVTYLVLDEADRMLD-MGFEPQIRKIVTQIRPDRQTLYWSATWPR 217 (448)
Q Consensus 173 ~~~~~iIvDE~h~~~~-~~~~~~~~~~~~~~~~~~~~v~~SAT~~~ 217 (448)
.++++||+||.-.... ......+..+...+.+..-++.+.++...
T Consensus 179 ~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~~ 224 (295)
T 1ls1_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ 224 (295)
T ss_dssp HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTH
T ss_pred CCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCcH
Confidence 3578999999943322 11223344444444455445556666433
No 187
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=89.87 E-value=1.8 Score=38.17 Aligned_cols=24 Identities=21% Similarity=0.209 Sum_probs=18.8
Q ss_pred HhhcCCcEEEEcCCCChHHHHHHH
Q 013176 60 MALKGRDLIGIAETGSGKTLSYLL 83 (448)
Q Consensus 60 ~~~~~~~~lv~~~tGsGKT~~~~l 83 (448)
.+..+.-+++.+|+|+|||..+..
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~ 49 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQ 49 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHH
Confidence 455677889999999999976443
No 188
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=89.78 E-value=0.75 Score=43.78 Aligned_cols=51 Identities=14% Similarity=0.006 Sum_probs=29.9
Q ss_pred hcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHH
Q 013176 62 LKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEAL 121 (448)
Q Consensus 62 ~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~ 121 (448)
..+.-+++.|++|+|||..+ +-++..+..+ +..++|++.- .-..|+..++.
T Consensus 195 ~~G~liiIaG~pG~GKTtla-l~ia~~~a~~-------g~~vl~fSlE-ms~~ql~~R~~ 245 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFA-LKQAKNMSDN-------DDVVNLHSLE-MGKKENIKRLI 245 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHH-HHHHHHHHHT-------TCEEEEECSS-SCTTHHHHHHH
T ss_pred CCCcEEEEEeCCCCChHHHH-HHHHHHHHHc-------CCEEEEEECC-CCHHHHHHHHH
Confidence 34456788899999999654 4444443332 4467877542 23344454443
No 189
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=89.77 E-value=2.2 Score=33.93 Aligned_cols=74 Identities=16% Similarity=0.296 Sum_probs=52.8
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHH---HHh-cCCcEEEEccHHHHHHHHccccCCCCc
Q 013176 100 GPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIR---DLR-RGVEIVIATPGRLIDMLEAQHTNLRRV 175 (448)
Q Consensus 100 ~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~ 175 (448)
..++||.|+++.-+..+.+.+... ++.+..++|+.+..+... .+. ...+|+|+| +.+ ...+++.++
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~-~~Gld~~~~ 104 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVAT-----DVA-ARGIDIENI 104 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEC-----GGG-TTTCCCSCC
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEC-----Chh-hcCCchhcC
Confidence 456999999999999999988874 678888998876544332 233 357899999 322 235677778
Q ss_pred cEEEEecc
Q 013176 176 TYLVLDEA 183 (448)
Q Consensus 176 ~~iIvDE~ 183 (448)
+++|.-+.
T Consensus 105 ~~Vi~~~~ 112 (163)
T 2hjv_A 105 SLVINYDL 112 (163)
T ss_dssp SEEEESSC
T ss_pred CEEEEeCC
Confidence 88876443
No 190
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=89.77 E-value=0.49 Score=40.87 Aligned_cols=22 Identities=27% Similarity=0.270 Sum_probs=17.4
Q ss_pred hhcCCcEEEEcCCCChHHHHHH
Q 013176 61 ALKGRDLIGIAETGSGKTLSYL 82 (448)
Q Consensus 61 ~~~~~~~lv~~~tGsGKT~~~~ 82 (448)
+..+.-+.+.+|+|+|||....
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~ 48 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAA 48 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHH
Confidence 4456778899999999997543
No 191
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=89.54 E-value=1.2 Score=46.45 Aligned_cols=18 Identities=33% Similarity=0.337 Sum_probs=15.1
Q ss_pred CcEEEEcCCCChHHHHHH
Q 013176 65 RDLIGIAETGSGKTLSYL 82 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~ 82 (448)
.+++++||+|+|||..+-
T Consensus 192 ~~vlL~G~pG~GKT~la~ 209 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVE 209 (854)
T ss_dssp CCCEEEECTTSCHHHHHH
T ss_pred CceEEEcCCCCCHHHHHH
Confidence 479999999999997543
No 192
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=89.54 E-value=2.6 Score=34.04 Aligned_cols=73 Identities=18% Similarity=0.202 Sum_probs=52.2
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHH---HHh-cCCcEEEEccHHHHHHHHccccCCCCc
Q 013176 100 GPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIR---DLR-RGVEIVIATPGRLIDMLEAQHTNLRRV 175 (448)
Q Consensus 100 ~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~ 175 (448)
..++||.|+++..+..+.+.+... ++.+..++|+.+..+... .+. ...+|+|+|. . ....+++..+
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~-----~-~~~Gid~~~~ 103 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQD----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN-----V-CARGIDVKQV 103 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC-----S-CCTTTCCTTE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec-----c-hhcCCCcccC
Confidence 567999999999999888888763 678888998876654432 233 3578999992 2 2334577778
Q ss_pred cEEEEec
Q 013176 176 TYLVLDE 182 (448)
Q Consensus 176 ~~iIvDE 182 (448)
++||.-+
T Consensus 104 ~~Vi~~d 110 (175)
T 2rb4_A 104 TIVVNFD 110 (175)
T ss_dssp EEEEESS
T ss_pred CEEEEeC
Confidence 8887533
No 193
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=89.40 E-value=0.9 Score=41.93 Aligned_cols=38 Identities=18% Similarity=0.145 Sum_probs=23.9
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCc
Q 013176 64 GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPT 109 (448)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~ 109 (448)
+.-+++.+++|+|||..++ .++..+... +..++|+..-
T Consensus 74 G~li~I~G~pGsGKTtlal-~la~~~~~~-------g~~vlyi~~E 111 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLAL-AIVAQAQKA-------GGTCAFIDAE 111 (366)
T ss_dssp TSEEEEEESTTSSHHHHHH-HHHHHHHHT-------TCCEEEEESS
T ss_pred CcEEEEEcCCCCChHHHHH-HHHHHHHHC-------CCeEEEEECC
Confidence 3567888999999997544 333333332 3457777553
No 194
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=88.94 E-value=0.79 Score=41.40 Aligned_cols=53 Identities=13% Similarity=-0.019 Sum_probs=30.8
Q ss_pred hhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013176 61 ALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALK 122 (448)
Q Consensus 61 ~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~ 122 (448)
+..+.-+++.|++|+|||..++ .++..+..+ +..++++..- .-..|+..++..
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l-~ia~~~a~~-------g~~vl~~slE-~s~~~l~~R~~~ 117 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFAL-KQAKNMSDN-------DDVVNLHSLE-MGKKENIKRLIV 117 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHH-HHHHHHHTT-------TCEEEEEESS-SCHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHH-HHHHHHHHc-------CCeEEEEECC-CCHHHHHHHHHH
Confidence 3345568888999999996543 333333322 3467777642 334455555543
No 195
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=88.94 E-value=0.72 Score=41.86 Aligned_cols=57 Identities=16% Similarity=-0.003 Sum_probs=29.5
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHH-HHHHHHHHHHh
Q 013176 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTREL-AVQIQEEALKF 123 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L-~~q~~~~~~~~ 123 (448)
.-+++.+++|+|||..++-.+........ ..+.+..++|+.-...+ ..++.+.++.+
T Consensus 108 ~i~~i~G~~GsGKT~la~~la~~~~~~~~--~gg~~~~vlyi~~e~~~~~~~l~~~~~~~ 165 (324)
T 2z43_A 108 TMTEFFGEFGSGKTQLCHQLSVNVQLPPE--KGGLSGKAVYIDTEGTFRWERIENMAKAL 165 (324)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGG--GTCCSCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHhHHHHHHHHHHhcccc--cCCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 46788899999999754433332211100 00113467777654322 34444444443
No 196
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.23 E-value=0.49 Score=44.80 Aligned_cols=53 Identities=15% Similarity=0.266 Sum_probs=33.4
Q ss_pred CcccccccCCCCHHHHHHHHHC---CCCCCcHHHHhHHHH--hhcCCcEEEEcCCCChHHHHH
Q 013176 24 RPIRIFQEANFPDYCLEVIAKL---GFVEPTPIQAQGWPM--ALKGRDLIGIAETGSGKTLSY 81 (448)
Q Consensus 24 ~p~~~~~~~~l~~~l~~~~~~~---~~~~~~~~Q~~~i~~--~~~~~~~lv~~~tGsGKT~~~ 81 (448)
.|-.+|++.+=-+...+.++.. .+..| +.+.. +...+.+|+.||+|+|||+.+
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~pl~~p-----e~f~~~Gi~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVELPLLSP-----ERFATLGIDPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHHHHHCH-----HHHHHHTCCCCSEEEECSCTTSSHHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHhcCH-----HHHHHCCCCCCCceEeeCCCCCcHHHHH
Confidence 4567888887666666666542 11111 22222 223468999999999999753
No 197
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=88.14 E-value=0.84 Score=49.39 Aligned_cols=88 Identities=16% Similarity=0.145 Sum_probs=51.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHHH
Q 013176 67 LIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRD 146 (448)
Q Consensus 67 ~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (448)
-+|.|..|||||.+.+--+...+.... .+.+++++||... .-++.+.+... .+..
T Consensus 4 ~lV~agAGSGKT~~l~~ri~~ll~~~~-----~~~~il~lVP~q~-TFt~~~rl~~~---l~~~---------------- 58 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINSIQDELRRAP-----FGKPIIFLVPDQM-TFLMEYELAKT---PDMG---------------- 58 (1166)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHHCT-----TSSCEEEECCGGG-HHHHHHHHTCC---SSCS----------------
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCC-----CCCcEEEEecCcc-cHHHHHHHHHh---hhhc----------------
Confidence 378899999999986666655554422 2467999999753 22333333322 1110
Q ss_pred HhcCCcEEEEccHHHHHHHHccccCCCCccEEEEeccc
Q 013176 147 LRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEAD 184 (448)
Q Consensus 147 ~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIvDE~h 184 (448)
....+-|+|.++|...+.+... ....-++|+..
T Consensus 59 --~~~~~~V~TFhsla~~il~~~g---~~~~~ild~~~ 91 (1166)
T 3u4q_B 59 --GMIRAQVFSFSRLAWRVLQHTG---GMSRPFLTSTG 91 (1166)
T ss_dssp --EESSEEEECHHHHHHHHHHHHS---CTTSCEECHHH
T ss_pred --ceeeeEEecHHHHHHHHHHHcC---CCcccCcCHHH
Confidence 0135889998888655443322 12344667655
No 198
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=87.95 E-value=3 Score=33.21 Aligned_cols=74 Identities=18% Similarity=0.308 Sum_probs=52.3
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHH---HHh-cCCcEEEEccHHHHHHHHccccCCCCc
Q 013176 100 GPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIR---DLR-RGVEIVIATPGRLIDMLEAQHTNLRRV 175 (448)
Q Consensus 100 ~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~ 175 (448)
..++||.++++.-+..+.+.+... ++.+..++++.+..+... .+. ....|+|+| +.+ ....++..+
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~-~~G~d~~~~ 99 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILIST-----DLL-ARGIDVQQV 99 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEE-----GGG-TTTCCCCSC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEc-----Chh-hcCCCcccC
Confidence 456999999999999999888874 677888898876544432 233 357899999 222 234567778
Q ss_pred cEEEEecc
Q 013176 176 TYLVLDEA 183 (448)
Q Consensus 176 ~~iIvDE~ 183 (448)
+++|.-+.
T Consensus 100 ~~Vi~~~~ 107 (165)
T 1fuk_A 100 SLVINYDL 107 (165)
T ss_dssp SEEEESSC
T ss_pred CEEEEeCC
Confidence 87776443
No 199
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.94 E-value=0.4 Score=45.33 Aligned_cols=55 Identities=16% Similarity=0.105 Sum_probs=31.3
Q ss_pred CcccccccCCCCHHHHHHHHH---CCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHH
Q 013176 24 RPIRIFQEANFPDYCLEVIAK---LGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSY 81 (448)
Q Consensus 24 ~p~~~~~~~~l~~~l~~~~~~---~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~ 81 (448)
.|..+|++.+=-+...+.++. +++..|--++.- .+...+.+|+.||+|+|||+.+
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~---g~~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRV---GIKPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHH---CCCCCCEEEEESCTTSSHHHHH
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhC---CCCCCCeEEEECCCCCcHHHHH
Confidence 456678887644555555443 122222222211 1223468999999999999863
No 200
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=87.74 E-value=0.43 Score=43.84 Aligned_cols=38 Identities=24% Similarity=0.274 Sum_probs=24.3
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCc
Q 013176 64 GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPT 109 (448)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~ 109 (448)
+.-+++.+|+|+|||.. ++.++..+... +.+++|+..-
T Consensus 61 G~i~~I~GppGsGKSTL-al~la~~~~~~-------gg~VlyId~E 98 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTL-ALHAIAEAQKM-------GGVAAFIDAE 98 (356)
T ss_dssp TEEEEEEESTTSSHHHH-HHHHHHHHHHT-------TCCEEEEESS
T ss_pred CcEEEEECCCCCCHHHH-HHHHHHHHHhc-------CCeEEEEecc
Confidence 34678889999999965 34444433332 4457777654
No 201
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=87.57 E-value=1 Score=40.41 Aligned_cols=90 Identities=10% Similarity=-0.002 Sum_probs=49.1
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHH
Q 013176 66 DLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIR 145 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (448)
.+++.+|+|+|||...+-.+...... ..+.+++|+..-..+... .+++++-..
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~------g~g~~vlyId~E~s~~~~---ra~~lGvd~------------------ 82 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQ------YPDAVCLFYDSEFGITPA---YLRSMGVDP------------------ 82 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHH------CTTCEEEEEESSCCCCHH---HHHHTTCCG------------------
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhc------CCCceEEEEeccchhhHH---HHHHhCCCH------------------
Confidence 57888999999997644433333322 114578888765444321 344443211
Q ss_pred HHhcCCcEEEEccHHHHHH----HHcc-ccCCCCccEEEEecccccc
Q 013176 146 DLRRGVEIVIATPGRLIDM----LEAQ-HTNLRRVTYLVLDEADRML 187 (448)
Q Consensus 146 ~~~~~~~iiv~T~~~l~~~----~~~~-~~~~~~~~~iIvDE~h~~~ 187 (448)
.++++..|..+.+. +... ...-..+++||||-+..+.
T Consensus 83 -----d~llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 83 -----ERVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp -----GGEEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCB
T ss_pred -----HHeEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccccc
Confidence 12444444433222 2111 1223458999999999875
No 202
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.15 E-value=0.54 Score=44.34 Aligned_cols=55 Identities=16% Similarity=0.147 Sum_probs=31.0
Q ss_pred CcccccccCCCCHHHHHHHHHC---CCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHH
Q 013176 24 RPIRIFQEANFPDYCLEVIAKL---GFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSY 81 (448)
Q Consensus 24 ~p~~~~~~~~l~~~l~~~~~~~---~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~ 81 (448)
.|..+|++.+=-+...+.+... .+..|-.++.- .+...+.+|+.||+|+|||+.+
T Consensus 166 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~---g~~~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 166 KPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQI---GIDPPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHH---CCCCCCEEEEESCTTTTHHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhC---CCCCCceEEEECCCCCCHHHHH
Confidence 4556788876555555554431 11112222211 1223467999999999999763
No 203
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=87.10 E-value=3.1 Score=34.86 Aligned_cols=71 Identities=21% Similarity=0.370 Sum_probs=52.0
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHH---HHh-cCCcEEEEccHHHHHHHHccccCCCCc
Q 013176 100 GPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIR---DLR-RGVEIVIATPGRLIDMLEAQHTNLRRV 175 (448)
Q Consensus 100 ~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~ 175 (448)
+.++||.|+++.-++.+.+.+... ++.+..++|+.+..+... .+. ...+|+|+| +.+. ...++..+
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT-----~~~~-~Gidi~~v 100 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVAT-----DVAA-RGLDIPQV 100 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEEC-----TTTT-CSSSCCCB
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEec-----Chhh-cCCCCccC
Confidence 457999999999999999888874 678888999877655433 233 357899999 3333 34677788
Q ss_pred cEEEE
Q 013176 176 TYLVL 180 (448)
Q Consensus 176 ~~iIv 180 (448)
++||.
T Consensus 101 ~~Vi~ 105 (212)
T 3eaq_A 101 DLVVH 105 (212)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 87774
No 204
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=86.96 E-value=0.78 Score=41.55 Aligned_cols=21 Identities=24% Similarity=-0.026 Sum_probs=15.6
Q ss_pred CcEEEEcCCCChHHHHHHHHH
Q 013176 65 RDLIGIAETGSGKTLSYLLPA 85 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~l~~ 85 (448)
.-+++.+++|+|||..++-.+
T Consensus 99 ~i~~i~G~~gsGKT~la~~la 119 (322)
T 2i1q_A 99 SVTEFAGVFGSGKTQIMHQSC 119 (322)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 457888999999997644333
No 205
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=86.88 E-value=1.1 Score=45.96 Aligned_cols=16 Identities=38% Similarity=0.584 Sum_probs=14.5
Q ss_pred CcEEEEcCCCChHHHH
Q 013176 65 RDLIGIAETGSGKTLS 80 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~ 80 (448)
+.+|+.+|+|+|||+.
T Consensus 239 ~GILL~GPPGTGKT~L 254 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLI 254 (806)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 5799999999999975
No 206
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=86.66 E-value=7.6 Score=31.10 Aligned_cols=74 Identities=12% Similarity=0.205 Sum_probs=52.5
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHH---HHh-cCCcEEEEccHHHHHHHHccccCCCCc
Q 013176 100 GPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIR---DLR-RGVEIVIATPGRLIDMLEAQHTNLRRV 175 (448)
Q Consensus 100 ~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~ 175 (448)
..++||.|+++.-+..+.+.+... ++.+..++++.+..+... .+. ....|+|+|. . ....+++..+
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~-~~~Gldi~~~ 100 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-----L-FGRGMDIERV 100 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS-----C-CSTTCCGGGC
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECC-----c-hhcCcchhhC
Confidence 457999999999999999888874 677888898876654332 233 3578999993 2 2234567778
Q ss_pred cEEEEecc
Q 013176 176 TYLVLDEA 183 (448)
Q Consensus 176 ~~iIvDE~ 183 (448)
++||.-+.
T Consensus 101 ~~Vi~~d~ 108 (172)
T 1t5i_A 101 NIAFNYDM 108 (172)
T ss_dssp SEEEESSC
T ss_pred CEEEEECC
Confidence 88776443
No 207
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=86.59 E-value=4.1 Score=41.70 Aligned_cols=19 Identities=26% Similarity=0.284 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 013176 64 GRDLIGIAETGSGKTLSYL 82 (448)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~ 82 (448)
..++++.||+|+|||..+-
T Consensus 207 ~~~vlL~G~~GtGKT~la~ 225 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIAE 225 (758)
T ss_dssp SCEEEEECCTTSSHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHH
Confidence 3589999999999997643
No 208
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=86.57 E-value=1.5 Score=37.33 Aligned_cols=71 Identities=17% Similarity=0.141 Sum_probs=50.8
Q ss_pred CCcEEEEecchhHHHHHHHHHHhC-----CCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEecc-c-----cCCCCCCC
Q 013176 272 GSRILIFTETKKGCDQVTRQLRMD-----GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDV-A-----ARGLDVKD 340 (448)
Q Consensus 272 ~~k~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~-~-----~~Gidi~~ 340 (448)
+.++||.+++++-+.++++.+++. +..+..++|+.+..++...+ ...+|+|+|.- + ...+++..
T Consensus 92 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~~ 166 (230)
T 2oxc_A 92 STQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPGS 166 (230)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGGG
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCccccc
Confidence 468999999999999999888764 57788899988866544332 25789999942 2 13455666
Q ss_pred ccEEEEc
Q 013176 341 IKCVVNY 347 (448)
Q Consensus 341 ~~~Vi~~ 347 (448)
++++|.=
T Consensus 167 ~~~lViD 173 (230)
T 2oxc_A 167 IRLFILD 173 (230)
T ss_dssp CCEEEES
T ss_pred CCEEEeC
Confidence 7766643
No 209
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=86.49 E-value=1.1 Score=40.98 Aligned_cols=57 Identities=12% Similarity=0.053 Sum_probs=28.9
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHH-HHHHHHHHHHh
Q 013176 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTREL-AVQIQEEALKF 123 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L-~~q~~~~~~~~ 123 (448)
.-+++.+|+|+|||..++-.+........ ..+.+..++|+.....+ ..++.+.+..+
T Consensus 123 ~i~~I~G~~GsGKTtla~~la~~~~~~~~--~gg~~~~vlyi~~E~~~~~~~l~~~~~~~ 180 (343)
T 1v5w_A 123 AITEAFGEFRTGKTQLSHTLCVTAQLPGA--GGYPGGKIIFIDTENTFRPDRLRDIADRF 180 (343)
T ss_dssp EEEEEECCTTCTHHHHHHHHHHHTTSCBT--TTBCCCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhcccc--cCCCCCeEEEEECCCCCCHHHHHHHHHHc
Confidence 34788899999999754433332222100 00124567777653321 23444444443
No 210
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=86.43 E-value=3.2 Score=35.49 Aligned_cols=73 Identities=16% Similarity=0.124 Sum_probs=53.2
Q ss_pred CCcEEEEecchhHHHHHHHHHHh----CCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEec-----cc-cCCCCCCCc
Q 013176 272 GSRILIFTETKKGCDQVTRQLRM----DGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD-----VA-ARGLDVKDI 341 (448)
Q Consensus 272 ~~k~lVf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~-~~Gidi~~~ 341 (448)
+.++||.+++++-+.++++.+++ .++.+..++|+.+.......+.. ..+|+|+|. .+ ...+++.++
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~~ 177 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRT 177 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCTTC
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCcccc
Confidence 55799999999999988877765 37889999999887665544432 578999993 22 134567788
Q ss_pred cEEEEcC
Q 013176 342 KCVVNYD 348 (448)
Q Consensus 342 ~~Vi~~~ 348 (448)
+++|.=.
T Consensus 178 ~~lViDE 184 (242)
T 3fe2_A 178 TYLVLDE 184 (242)
T ss_dssp CEEEETT
T ss_pred cEEEEeC
Confidence 8877544
No 211
>2l6f_A Focal adhesion kinase 1, linker1, paxillin, linke paxillin; FAT, FAK, LD2, LD4, fusion protein, chimera protei transferase,cell adhesion; NMR {Gallus gallus} PDB: 2l6g_A 2l6h_A
Probab=86.41 E-value=0.14 Score=41.76 Aligned_cols=13 Identities=38% Similarity=0.644 Sum_probs=4.7
Q ss_pred CCCCCCCCCCCCC
Q 013176 424 GRGGFGIRSSMSG 436 (448)
Q Consensus 424 g~g~~g~~~~~~~ 436 (448)
|.||.|+.||.+|
T Consensus 187 ~~~~~~~~~~~~~ 199 (215)
T 2l6f_A 187 GSGGSGGSGGSGG 199 (215)
Confidence 3333333333333
No 212
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=86.28 E-value=1 Score=42.33 Aligned_cols=37 Identities=19% Similarity=0.280 Sum_probs=23.0
Q ss_pred HHHHhHHHHhhc--CCcEEEEcCCCChHHHHHHHHHHHHh
Q 013176 52 PIQAQGWPMALK--GRDLIGIAETGSGKTLSYLLPAFVHV 89 (448)
Q Consensus 52 ~~Q~~~i~~~~~--~~~~lv~~~tGsGKT~~~~l~~l~~~ 89 (448)
+.+..++..++. +.-+++.+|||||||.. +..++..+
T Consensus 153 ~~~~~~L~~l~~~~ggii~I~GpnGSGKTTl-L~allg~l 191 (418)
T 1p9r_A 153 AHNHDNFRRLIKRPHGIILVTGPTGSGKSTT-LYAGLQEL 191 (418)
T ss_dssp HHHHHHHHHHHTSSSEEEEEECSTTSCHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCeEEEECCCCCCHHHH-HHHHHhhc
Confidence 345555655443 34578889999999964 33344433
No 213
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=86.14 E-value=1.7 Score=42.13 Aligned_cols=39 Identities=21% Similarity=-0.011 Sum_probs=25.4
Q ss_pred HHHHHCCCCCCcHHHHhHHH-HhhcCCcEEEEcCCCChHHHH
Q 013176 40 EVIAKLGFVEPTPIQAQGWP-MALKGRDLIGIAETGSGKTLS 80 (448)
Q Consensus 40 ~~~~~~~~~~~~~~Q~~~i~-~~~~~~~~lv~~~tGsGKT~~ 80 (448)
..+...|. +.+.+.+.+. .+..+..+++.||||||||..
T Consensus 237 ~~l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 237 IDLIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHHHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred hhHHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 33445553 3444444443 345677899999999999964
No 214
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.12 E-value=1.2 Score=41.71 Aligned_cols=55 Identities=20% Similarity=0.286 Sum_probs=32.2
Q ss_pred CcccccccCCCCHHHHHHHHH---CCCCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHH
Q 013176 24 RPIRIFQEANFPDYCLEVIAK---LGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSY 81 (448)
Q Consensus 24 ~p~~~~~~~~l~~~l~~~~~~---~~~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~ 81 (448)
.|-.+|++.+=-+...+.++. +.+..|--++.-- +...+.+|+.+|+|+|||+.+
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~G---i~~prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMG---IKPPKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHT---CCCCSEEEEESSTTTTHHHHH
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCCCceECCCCchHHHHH
Confidence 466788887644455544443 2222333332211 122368999999999999853
No 215
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=86.09 E-value=2.7 Score=38.79 Aligned_cols=72 Identities=14% Similarity=0.180 Sum_probs=52.9
Q ss_pred CCcEEEEecchhHHHHHHHHHHhC-----CCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEec-cc-----cCCCCCCC
Q 013176 272 GSRILIFTETKKGCDQVTRQLRMD-----GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD-VA-----ARGLDVKD 340 (448)
Q Consensus 272 ~~k~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-~~-----~~Gidi~~ 340 (448)
+.++||.|+++.-+.++++.+++. +..+..++|+.+...... .+..+..+|+|+|. .+ ...+++..
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~ 152 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNLKH 152 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHH---HHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 458999999999999988887764 678999999988665443 34456789999993 22 23456667
Q ss_pred ccEEEE
Q 013176 341 IKCVVN 346 (448)
Q Consensus 341 ~~~Vi~ 346 (448)
+++||.
T Consensus 153 ~~~vVi 158 (391)
T 1xti_A 153 IKHFIL 158 (391)
T ss_dssp CSEEEE
T ss_pred cCEEEE
Confidence 777663
No 216
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=85.77 E-value=4 Score=33.32 Aligned_cols=71 Identities=18% Similarity=0.280 Sum_probs=43.6
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHh---HHHHh-cCCcEEEEccHHHHHHHHccccCCCCc
Q 013176 100 GPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQ---IRDLR-RGVEIVIATPGRLIDMLEAQHTNLRRV 175 (448)
Q Consensus 100 ~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~ 175 (448)
..++||.|+++.-+..+.+.++.. ++.+..++|+.+..+. ...+. ....|+|+|. .+. ..+++..+
T Consensus 46 ~~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~-~Gldi~~~ 115 (185)
T 2jgn_A 46 DSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAA-RGLDISNV 115 (185)
T ss_dssp CSCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHHHHHHHHTSSSEEEEEC------------CCCSB
T ss_pred CCeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcC-----hhh-cCCCcccC
Confidence 567999999999999998888874 6778888887654332 23333 3578999992 222 24567777
Q ss_pred cEEEE
Q 013176 176 TYLVL 180 (448)
Q Consensus 176 ~~iIv 180 (448)
++||.
T Consensus 116 ~~VI~ 120 (185)
T 2jgn_A 116 KHVIN 120 (185)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 87776
No 217
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=85.63 E-value=0.78 Score=43.58 Aligned_cols=43 Identities=19% Similarity=0.277 Sum_probs=30.8
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHH
Q 013176 64 GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAV 114 (448)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~ 114 (448)
..++++.|+||+|||... ..++..+... +..++|+=|.-++..
T Consensus 53 ~~h~~i~G~tGsGKs~~~-~~li~~~~~~-------g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLL-RELAYTGLLR-------GDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGCEEEEECTTSSHHHHH-HHHHHHHHHT-------TCEEEEEEETTHHHH
T ss_pred cceEEEECCCCCCHHHHH-HHHHHHHHHC-------CCcEEEEeCCCchhH
Confidence 468999999999999864 3344444332 557888888877753
No 218
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=85.54 E-value=6.4 Score=35.55 Aligned_cols=53 Identities=21% Similarity=0.272 Sum_probs=33.1
Q ss_pred CccEEEEeccccccc-CCCHHHHHHHHHHcCCCcceEEEeccCchHHHHHHHHH
Q 013176 174 RVTYLVLDEADRMLD-MGFEPQIRKIVTQIRPDRQTLYWSATWPREVETLARQF 226 (448)
Q Consensus 174 ~~~~iIvDE~h~~~~-~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~ 226 (448)
..+++++|.+-.... ......+..+.+.+.++..++.+.++...+....+..+
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~ 264 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQF 264 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHH
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHH
Confidence 356788998876432 22345555566666677777788887665555554443
No 219
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=84.64 E-value=5.4 Score=38.42 Aligned_cols=17 Identities=29% Similarity=0.329 Sum_probs=13.8
Q ss_pred cEEEEcCCCChHHHHHH
Q 013176 66 DLIGIAETGSGKTLSYL 82 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~~~ 82 (448)
.+++++++|+|||..+.
T Consensus 103 vI~ivG~~GvGKTTl~~ 119 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCS 119 (504)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47788999999997644
No 220
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=84.57 E-value=0.71 Score=53.69 Aligned_cols=49 Identities=20% Similarity=0.209 Sum_probs=35.6
Q ss_pred CCHHHHHHHHHCCCCCCcHHHH----hHHHHhhcCCcEEEEcCCCChHHHHHHH
Q 013176 34 FPDYCLEVIAKLGFVEPTPIQA----QGWPMALKGRDLIGIAETGSGKTLSYLL 83 (448)
Q Consensus 34 l~~~l~~~~~~~~~~~~~~~Q~----~~i~~~~~~~~~lv~~~tGsGKT~~~~l 83 (448)
+.+.+.+.+...++ .+.+.+. +..+.+..+..++++||||+|||.++-.
T Consensus 890 l~~~i~~~~~~~~l-~~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~ 942 (2695)
T 4akg_A 890 IVQCLKDAGQRSGF-SMSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKT 942 (2695)
T ss_dssp HHHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHH
T ss_pred HHHHHHHHHHHcCC-cccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHH
Confidence 34556777888888 6777663 3334455678899999999999987654
No 221
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=84.26 E-value=1 Score=37.75 Aligned_cols=31 Identities=26% Similarity=0.154 Sum_probs=25.9
Q ss_pred CcHHHHhHHHHhhcCCcEEEEcCCCChHHHH
Q 013176 50 PTPIQAQGWPMALKGRDLIGIAETGSGKTLS 80 (448)
Q Consensus 50 ~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~ 80 (448)
-+..|..++..+..+.-+.+.+|.|+|||..
T Consensus 8 k~~g~~~~l~~i~~Ge~~~liG~nGsGKSTL 38 (208)
T 3b85_A 8 KTLGQKHYVDAIDTNTIVFGLGPAGSGKTYL 38 (208)
T ss_dssp CSHHHHHHHHHHHHCSEEEEECCTTSSTTHH
T ss_pred CCHhHHHHHHhccCCCEEEEECCCCCCHHHH
Confidence 3455778888888888899999999999974
No 222
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=84.09 E-value=0.79 Score=40.08 Aligned_cols=20 Identities=30% Similarity=0.272 Sum_probs=16.3
Q ss_pred hhcCCcEEEEcCCCChHHHH
Q 013176 61 ALKGRDLIGIAETGSGKTLS 80 (448)
Q Consensus 61 ~~~~~~~lv~~~tGsGKT~~ 80 (448)
+..+.-+++.+|||||||..
T Consensus 22 i~~g~~v~i~Gp~GsGKSTl 41 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTT 41 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHH
T ss_pred hCCCCEEEEECCCCccHHHH
Confidence 44566788999999999974
No 223
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=84.05 E-value=14 Score=36.15 Aligned_cols=77 Identities=12% Similarity=0.089 Sum_probs=55.8
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHH---HHh-cCCcEEEEccHHHHHHHHccccCCCCc
Q 013176 100 GPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIR---DLR-RGVEIVIATPGRLIDMLEAQHTNLRRV 175 (448)
Q Consensus 100 ~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~ 175 (448)
+.++||.|+++.-++.+++.+..... .++.+..++++.+..+... .+. ...+|+|+| +.+ ...+++.++
T Consensus 339 ~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT-----~~~-~~GiDip~v 411 (563)
T 3i5x_A 339 NYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCT-----DVG-ARGMDFPNV 411 (563)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEEC-----GGG-TSSCCCTTC
T ss_pred CCcEEEEcCcHHHHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEc-----chh-hcCCCcccC
Confidence 66899999999999999999987643 2677888898876654432 222 457899999 333 345678888
Q ss_pred cEEEEecc
Q 013176 176 TYLVLDEA 183 (448)
Q Consensus 176 ~~iIvDE~ 183 (448)
++||.-..
T Consensus 412 ~~VI~~~~ 419 (563)
T 3i5x_A 412 HEVLQIGV 419 (563)
T ss_dssp CEEEEESC
T ss_pred CEEEEECC
Confidence 88876543
No 224
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=83.92 E-value=2.4 Score=36.20 Aligned_cols=74 Identities=19% Similarity=0.202 Sum_probs=44.8
Q ss_pred cCCcEEEEecchhHHHHHHHHHHhC----CCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEec-----cccC-CCCCCC
Q 013176 271 DGSRILIFTETKKGCDQVTRQLRMD----GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD-----VAAR-GLDVKD 340 (448)
Q Consensus 271 ~~~k~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~~~-Gidi~~ 340 (448)
.+.++||.+++++.+..+++.+++. +..+..++++.+... ..+.+..+..+|+|+|. .+.. .+++..
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 3458999999999999999888764 456777777655332 33445566789999992 2223 356667
Q ss_pred ccEEEEc
Q 013176 341 IKCVVNY 347 (448)
Q Consensus 341 ~~~Vi~~ 347 (448)
+++||.=
T Consensus 174 ~~~lViD 180 (237)
T 3bor_A 174 IKMFVLD 180 (237)
T ss_dssp CCEEEEE
T ss_pred CcEEEEC
Confidence 7777643
No 225
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=83.27 E-value=1.2 Score=32.75 Aligned_cols=46 Identities=11% Similarity=0.108 Sum_probs=36.8
Q ss_pred HHHHHHhhhcCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCC
Q 013176 262 LIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKN 307 (448)
Q Consensus 262 l~~~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 307 (448)
+.+.+.+...++++++||.+-..+...+..|++.|+++..+.|++.
T Consensus 45 l~~~~~~l~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 45 LREKWKILERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp HHHHGGGSCTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred HHHHHHhCCCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 3344444455778999999988899999999999999999988754
No 226
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=83.09 E-value=1.6 Score=36.39 Aligned_cols=49 Identities=14% Similarity=0.070 Sum_probs=29.0
Q ss_pred HHHHHHHHCCCCCCcHHHHhHHHHhhcC----CcEEEEcCCCChHHHHHHHHHHHH
Q 013176 37 YCLEVIAKLGFVEPTPIQAQGWPMALKG----RDLIGIAETGSGKTLSYLLPAFVH 88 (448)
Q Consensus 37 ~l~~~~~~~~~~~~~~~Q~~~i~~~~~~----~~~lv~~~tGsGKT~~~~l~~l~~ 88 (448)
.+.+.|+-.++ .+-.+ ...+..++.+ +.+++.+|+|+|||..+ .+++..
T Consensus 29 ~I~~~l~yq~~-~~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a-~ala~~ 81 (212)
T 1tue_A 29 PIVQFLRYQQI-EFITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG-MSFIHF 81 (212)
T ss_dssp HHHHHHHHTTC-CHHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH-HHHHHH
T ss_pred HHHHHHHHcCc-CHHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH-HHHHHH
Confidence 45566654444 34444 3444455444 35888999999999753 344443
No 227
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=83.02 E-value=2 Score=32.78 Aligned_cols=48 Identities=13% Similarity=0.148 Sum_probs=37.0
Q ss_pred HHHHHHHhhhcC-CcEEEEe-cchhHHHHHHHHHHhCCCCeEEEcCCCCH
Q 013176 261 RLIKLLKEVMDG-SRILIFT-ETKKGCDQVTRQLRMDGWPALSIHGDKNQ 308 (448)
Q Consensus 261 ~l~~~l~~~~~~-~k~lVf~-~~~~~~~~l~~~L~~~~~~~~~~~~~~~~ 308 (448)
.+...+.....+ ++++||| .+-..+...+..|+..|+++..+.|++..
T Consensus 77 ~~~~~~~~~~~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~ 126 (134)
T 3g5j_A 77 DIYLQAAELALNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKA 126 (134)
T ss_dssp HHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHH
T ss_pred HHHHHHHHhccCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHH
Confidence 444444445566 8999999 57777888999999999999999987653
No 228
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=83.01 E-value=4.9 Score=33.12 Aligned_cols=72 Identities=14% Similarity=0.135 Sum_probs=49.9
Q ss_pred CCcEEEEecchhHHHHHHHHHHhC-----CCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEec-c----ccC-CCCCCC
Q 013176 272 GSRILIFTETKKGCDQVTRQLRMD-----GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD-V----AAR-GLDVKD 340 (448)
Q Consensus 272 ~~k~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-~----~~~-Gidi~~ 340 (448)
+.++||.++++.-+.++++.+++. +..+..++++.+..+... .+ .+..+|+|+|. . +.. .+++..
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~-~~~~~i~v~T~~~l~~~~~~~~~~~~~ 146 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIM---RL-DDTVHVVIATPGRILDLIKKGVAKVDH 146 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHH---HT-TSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHH---hc-CCCCCEEEeCHHHHHHHHHcCCcCccc
Confidence 457999999999999988887653 567888888887654322 22 34678999994 2 222 345667
Q ss_pred ccEEEEc
Q 013176 341 IKCVVNY 347 (448)
Q Consensus 341 ~~~Vi~~ 347 (448)
++++|.=
T Consensus 147 ~~~lViD 153 (206)
T 1vec_A 147 VQMIVLD 153 (206)
T ss_dssp CCEEEEE
T ss_pred CCEEEEE
Confidence 7777643
No 229
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=82.91 E-value=0.58 Score=41.97 Aligned_cols=55 Identities=15% Similarity=0.207 Sum_probs=31.0
Q ss_pred CcccccccCCCCHHHHHHHHHCCCCCCcHHH-HhHHHH--hhcCCcEEEEcCCCChHHHHH
Q 013176 24 RPIRIFQEANFPDYCLEVIAKLGFVEPTPIQ-AQGWPM--ALKGRDLIGIAETGSGKTLSY 81 (448)
Q Consensus 24 ~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q-~~~i~~--~~~~~~~lv~~~tGsGKT~~~ 81 (448)
.|..+|+++.-.+...+.+... . -+|.. .+.+.. +..++.+++.||+|+|||+.+
T Consensus 9 ~~~~~~~di~G~~~~~~~l~~~-v--~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 9 VPQVTWEDIGGLEDVKRELQEL-V--QYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHH-H--HHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHH-H--HHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 4556788876555555555431 0 01100 011111 234567999999999999764
No 230
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=82.86 E-value=2 Score=39.46 Aligned_cols=20 Identities=40% Similarity=0.426 Sum_probs=16.3
Q ss_pred cCCcEEEEcCCCChHHHHHH
Q 013176 63 KGRDLIGIAETGSGKTLSYL 82 (448)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~~ 82 (448)
...++++.+|+|+|||..+-
T Consensus 50 ~~~~vll~GppGtGKT~la~ 69 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAE 69 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 34689999999999998643
No 231
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=82.84 E-value=1.4 Score=41.17 Aligned_cols=41 Identities=24% Similarity=0.471 Sum_probs=27.7
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHH
Q 013176 63 KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRE 111 (448)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~ 111 (448)
.+.++++.++||+|||...-. ++..+... +.+++++=|..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~-~~~~~~~~-------~~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKM-LLLREYMQ-------GSRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHH-HHHHHHTT-------TCCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHH-HHHHHHHC-------CCEEEEEeCCcC
Confidence 556899999999999976443 33333322 556888877643
No 232
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=82.78 E-value=3.5 Score=34.81 Aligned_cols=74 Identities=19% Similarity=0.252 Sum_probs=48.6
Q ss_pred cCCcEEEEecchhHHHHHHHHHHhC---CCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEec-cc-----cCCCCCCCc
Q 013176 271 DGSRILIFTETKKGCDQVTRQLRMD---GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD-VA-----ARGLDVKDI 341 (448)
Q Consensus 271 ~~~k~lVf~~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-~~-----~~Gidi~~~ 341 (448)
.+.++||.+++++-+.++++.+++. +..+..++++.+...+... +. ...+|+|+|. .+ ...+++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIED---IS-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHH---HH-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHH---hc-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 4568999999999999999988774 6778888887765543332 23 3578999993 11 235667778
Q ss_pred cEEEEcC
Q 013176 342 KCVVNYD 348 (448)
Q Consensus 342 ~~Vi~~~ 348 (448)
++||.=.
T Consensus 169 ~~lViDE 175 (228)
T 3iuy_A 169 TYLVIDE 175 (228)
T ss_dssp CEEEECC
T ss_pred eEEEEEC
Confidence 8777533
No 233
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=82.73 E-value=5.1 Score=33.04 Aligned_cols=73 Identities=19% Similarity=0.188 Sum_probs=51.6
Q ss_pred CCcEEEEecchhHHHHHHHHHHhC--CCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEec-c----c-cCCCCCCCccE
Q 013176 272 GSRILIFTETKKGCDQVTRQLRMD--GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD-V----A-ARGLDVKDIKC 343 (448)
Q Consensus 272 ~~k~lVf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-~----~-~~Gidi~~~~~ 343 (448)
+.+++|.++++..+..+++.+++. ...+..++++.+.......+. ...+|+|+|. . + ...+++..+++
T Consensus 72 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~~ 147 (207)
T 2gxq_A 72 KPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVEV 147 (207)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCSE
T ss_pred CCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhceE
Confidence 568999999999999999998876 467888888877554433332 2578999994 1 1 23456777887
Q ss_pred EEEcC
Q 013176 344 VVNYD 348 (448)
Q Consensus 344 Vi~~~ 348 (448)
||.=.
T Consensus 148 iViDE 152 (207)
T 2gxq_A 148 AVLDE 152 (207)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 77533
No 234
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=82.52 E-value=0.5 Score=42.87 Aligned_cols=55 Identities=16% Similarity=0.146 Sum_probs=30.5
Q ss_pred CcccccccCCCCHHHHHHHHHCCCCCCcHHHH-hHHHH-hhcCCcEEEEcCCCChHHHHH
Q 013176 24 RPIRIFQEANFPDYCLEVIAKLGFVEPTPIQA-QGWPM-ALKGRDLIGIAETGSGKTLSY 81 (448)
Q Consensus 24 ~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~-~~i~~-~~~~~~~lv~~~tGsGKT~~~ 81 (448)
.|..+|++..=.+...+.++..= ..|.+. +.+.. ....+.+++.||+|+|||..+
T Consensus 6 ~~~~~~~di~G~~~~k~~l~~~v---~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 6 RPNVKWSDVAGLEGAKEALKEAV---ILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHH---HHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCCCCHHHhcCHHHHHHHHHHHH---HHHHhCHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 45568888766666666554310 011110 00001 112357999999999999753
No 235
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=82.37 E-value=7.1 Score=36.31 Aligned_cols=71 Identities=18% Similarity=0.251 Sum_probs=52.5
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHH---HHh-cCCcEEEEccHHHHHHHHccccCCCCc
Q 013176 100 GPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIR---DLR-RGVEIVIATPGRLIDMLEAQHTNLRRV 175 (448)
Q Consensus 100 ~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~ 175 (448)
+.++||.++++.-++.+.+.+.+. ++.+..++++.+..+... .+. ...+|+|+| +.+. ..+++.++
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT-----~~~~-~Gidip~v 345 (417)
T 2i4i_A 276 DSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVAT-----AVAA-RGLDISNV 345 (417)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEEC-----HHHH-TTSCCCCE
T ss_pred CCeEEEEECCHHHHHHHHHHHHHC----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEEC-----Chhh-cCCCcccC
Confidence 667999999999999999888874 677888898877644432 222 357899999 4444 35677788
Q ss_pred cEEEE
Q 013176 176 TYLVL 180 (448)
Q Consensus 176 ~~iIv 180 (448)
++||.
T Consensus 346 ~~Vi~ 350 (417)
T 2i4i_A 346 KHVIN 350 (417)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 87775
No 236
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=81.95 E-value=4 Score=43.54 Aligned_cols=74 Identities=16% Similarity=0.187 Sum_probs=56.0
Q ss_pred cCCcEEEEecchhHHHHHHHHHHhC----CC----CeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEec-cccCCCC-CCC
Q 013176 271 DGSRILIFTETKKGCDQVTRQLRMD----GW----PALSIHGDKNQSERDWVLAEFRSGRSPIMTATD-VAARGLD-VKD 340 (448)
Q Consensus 271 ~~~k~lVf~~~~~~~~~l~~~L~~~----~~----~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-~~~~Gid-i~~ 340 (448)
.+.++||.+++++-|.++++.+++. ++ .+..++|+.+..++....+.+++ .+|+|+|. .+..-+. +..
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~ 175 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGH 175 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCC
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhcc
Confidence 4678999999999999988888653 55 78999999998888777777776 89999993 2221121 456
Q ss_pred ccEEEE
Q 013176 341 IKCVVN 346 (448)
Q Consensus 341 ~~~Vi~ 346 (448)
+++||.
T Consensus 176 l~~lVi 181 (1054)
T 1gku_B 176 FDFIFV 181 (1054)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 777764
No 237
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=81.92 E-value=6.2 Score=34.23 Aligned_cols=74 Identities=24% Similarity=0.304 Sum_probs=52.0
Q ss_pred cCCcEEEEecchhHHHHHHHHHHhC----CCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEec------cc-cCCCCCC
Q 013176 271 DGSRILIFTETKKGCDQVTRQLRMD----GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD------VA-ARGLDVK 339 (448)
Q Consensus 271 ~~~k~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~------~~-~~Gidi~ 339 (448)
.+.++||.+++++-+.++++.+++. +..+..+.|+......... +..+ .+|+|+|. +. ..++++.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---LGNG-INIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---HHHC-CSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---hcCC-CCEEEEcHHHHHHHHHccCCcccc
Confidence 3568999999999999998888763 5667788888776544333 3333 88999993 11 2356777
Q ss_pred CccEEEEcC
Q 013176 340 DIKCVVNYD 348 (448)
Q Consensus 340 ~~~~Vi~~~ 348 (448)
++++||.=.
T Consensus 201 ~l~~lViDE 209 (262)
T 3ly5_A 201 NLQCLVIDE 209 (262)
T ss_dssp TCCEEEECS
T ss_pred cCCEEEEcC
Confidence 888877533
No 238
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=81.86 E-value=1.7 Score=37.67 Aligned_cols=55 Identities=13% Similarity=0.075 Sum_probs=32.5
Q ss_pred CCcccccccCCCCHHHHHHHHHCCCCCCcHHHHhHHHHhh--cCCcEEEEcCCCChHHHH
Q 013176 23 PRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMAL--KGRDLIGIAETGSGKTLS 80 (448)
Q Consensus 23 ~~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~--~~~~~lv~~~tGsGKT~~ 80 (448)
..|..+|+++.-.+...+.++..-. .. -...++..+- -.+.+++.+|+|+|||..
T Consensus 9 ~~~~~~~~~i~g~~~~~~~l~~l~~--~~-~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl 65 (254)
T 1ixz_A 9 EAPKVTFKDVAGAEEAKEELKEIVE--FL-KNPSRFHEMGARIPKGVLLVGPPGVGKTHL 65 (254)
T ss_dssp CCCSCCGGGCCSCHHHHHHHHHHHH--HH-HCHHHHHHTTCCCCSEEEEECCTTSSHHHH
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHH--HH-HCHHHHHHcCCCCCCeEEEECCCCCCHHHH
Confidence 3566789988766666666554211 00 0112333321 124589999999999975
No 239
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=81.45 E-value=21 Score=34.94 Aligned_cols=78 Identities=12% Similarity=0.085 Sum_probs=56.4
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHH---HHh-cCCcEEEEccHHHHHHHHccccCCCCc
Q 013176 100 GPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIR---DLR-RGVEIVIATPGRLIDMLEAQHTNLRRV 175 (448)
Q Consensus 100 ~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~ 175 (448)
+.++||.|+++.-++.+++.+++... .++.+..++++.+..+... .+. ...+|+|+| +.+ ...+++.++
T Consensus 288 ~~~~iVF~~t~~~~~~l~~~L~~~~~-~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT-----~~~-~~GiDip~v 360 (579)
T 3sqw_A 288 NYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCT-----DVG-ARGMDFPNV 360 (579)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEEC-----GGG-TSSCCCTTC
T ss_pred CCcEEEECCcHHHHHHHHHHHHHhhc-CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEc-----chh-hcCCCcccC
Confidence 56899999999999999999987643 2677888898876654432 232 457899999 333 345678888
Q ss_pred cEEEEeccc
Q 013176 176 TYLVLDEAD 184 (448)
Q Consensus 176 ~~iIvDE~h 184 (448)
++||.-..-
T Consensus 361 ~~VI~~~~p 369 (579)
T 3sqw_A 361 HEVLQIGVP 369 (579)
T ss_dssp CEEEEESCC
T ss_pred CEEEEcCCC
Confidence 888865543
No 240
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=81.42 E-value=2.8 Score=36.53 Aligned_cols=44 Identities=14% Similarity=0.114 Sum_probs=30.4
Q ss_pred HHHHHHHHHCCCCCCcHHH-HhHHHHhhcCC-----cEEEEcCCCChHHHHHH
Q 013176 36 DYCLEVIAKLGFVEPTPIQ-AQGWPMALKGR-----DLIGIAETGSGKTLSYL 82 (448)
Q Consensus 36 ~~l~~~~~~~~~~~~~~~Q-~~~i~~~~~~~-----~~lv~~~tGsGKT~~~~ 82 (448)
..+.+.++-.|+ . |.+ ..++..+++++ .+++.||+|+|||+.+.
T Consensus 73 n~i~~~l~~qg~-~--~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 73 NRIYKILELNGY-D--PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp CHHHHHHHHTTC-C--HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHcCC-C--HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 467788888887 3 444 23355555543 58888999999997644
No 241
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=81.17 E-value=1.1 Score=40.55 Aligned_cols=25 Identities=24% Similarity=0.077 Sum_probs=19.5
Q ss_pred HHHHhhcCCcEEEEcCCCChHHHHH
Q 013176 57 GWPMALKGRDLIGIAETGSGKTLSY 81 (448)
Q Consensus 57 ~i~~~~~~~~~lv~~~tGsGKT~~~ 81 (448)
+...+..+.++++.||+|+|||..+
T Consensus 39 l~~~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 39 LLIGICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHHHHTCCEEEESCCCHHHHHHH
T ss_pred HHHHHHcCCeEEEECCCCCcHHHHH
Confidence 3344556789999999999999753
No 242
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=80.98 E-value=1.8 Score=39.80 Aligned_cols=26 Identities=23% Similarity=0.233 Sum_probs=17.7
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHh
Q 013176 63 KGRDLIGIAETGSGKTLSYLLPAFVHV 89 (448)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~~l~~l~~~ 89 (448)
.+..+++.||||||||.. +-.++..+
T Consensus 122 ~~g~i~I~GptGSGKTTl-L~~l~g~~ 147 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTT-LAAMLDYL 147 (356)
T ss_dssp SSEEEEEECSTTSCHHHH-HHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHH-HHHHHhcc
Confidence 345688899999999964 33344433
No 243
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=80.91 E-value=1.3 Score=38.66 Aligned_cols=19 Identities=32% Similarity=0.454 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCChHHHHH
Q 013176 63 KGRDLIGIAETGSGKTLSY 81 (448)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~ 81 (448)
.+.++++.||+|+|||..+
T Consensus 28 ~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp SCSCEEEECCTTSCHHHHH
T ss_pred CCCCEEEECCCCCcHHHHH
Confidence 4568999999999999753
No 244
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=80.46 E-value=0.51 Score=41.70 Aligned_cols=55 Identities=15% Similarity=0.167 Sum_probs=27.8
Q ss_pred CCcccccccCCCCHHHHHHHHHCCCCCCcHHH-HhHHHHhh--cCCcEEEEcCCCChHHHH
Q 013176 23 PRPIRIFQEANFPDYCLEVIAKLGFVEPTPIQ-AQGWPMAL--KGRDLIGIAETGSGKTLS 80 (448)
Q Consensus 23 ~~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q-~~~i~~~~--~~~~~lv~~~tGsGKT~~ 80 (448)
..|..+|++.+-.+.+.+.++.. + ..|+. .+++..+- -.+.+++.||+|+|||+.
T Consensus 3 ~~~~~~~~di~g~~~~~~~l~~~-i--~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtL 60 (274)
T 2x8a_A 3 TVPNVTWADIGALEDIREELTMA-I--LAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLL 60 (274)
T ss_dssp ---------CCHHHHHHHHHHHH-H--THHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHH
T ss_pred CCCCCCHHHhCCHHHHHHHHHHH-H--HHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHH
Confidence 35667899988777777776542 1 12221 23333322 234599999999999975
No 245
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=80.45 E-value=14 Score=34.62 Aligned_cols=18 Identities=28% Similarity=0.159 Sum_probs=13.8
Q ss_pred cEEEEcCCCChHHHHHHH
Q 013176 66 DLIGIAETGSGKTLSYLL 83 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~~~l 83 (448)
-+++.++.|+|||.....
T Consensus 100 vi~i~G~~GsGKTT~~~~ 117 (425)
T 2ffh_A 100 LWFLVGLQGSGKTTTAAK 117 (425)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 466779999999976443
No 246
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=80.42 E-value=2.5 Score=47.01 Aligned_cols=90 Identities=19% Similarity=0.174 Sum_probs=53.2
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhH
Q 013176 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQI 144 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (448)
+-+.+.+|.|||||..++- +++...+. +..++++.+-.+|-... +++++-...
T Consensus 1432 ~~iei~g~~~sGkttl~~~-~~a~~~~~-------g~~~~~i~~e~~~~~~~---~~~~Gv~~~---------------- 1484 (1706)
T 3cmw_A 1432 RIVEIYGPESSGKTTLTLQ-VIAAAQRE-------GKTCAFIDAEHALDPIY---ARKLGVDID---------------- 1484 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHH-HHHHHHHT-------TCCEEEECTTSCCCHHH---HHHTTCCGG----------------
T ss_pred CEEEEEcCCCCCHHHHHHH-HHHHHHhc-------CCeEEEEecCCCCCHHH---HHHcCCCHH----------------
Confidence 4588889999999987544 44333332 66788888865554443 555432221
Q ss_pred HHHhcCCcEEEEccHHHHHHHHcc--ccCCCCccEEEEeccccccc
Q 013176 145 RDLRRGVEIVIATPGRLIDMLEAQ--HTNLRRVTYLVLDEADRMLD 188 (448)
Q Consensus 145 ~~~~~~~~iiv~T~~~l~~~~~~~--~~~~~~~~~iIvDE~h~~~~ 188 (448)
+++++-|+.--+.+.-. ...-..+++||||.+-.+..
T Consensus 1485 -------~l~~~~p~~~e~~l~~~~~~~~s~~~~~vvvDsv~al~~ 1523 (1706)
T 3cmw_A 1485 -------NLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTP 1523 (1706)
T ss_dssp -------GCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCCC
T ss_pred -------HeEEeCCCcHHHHHHHHHHHHHcCCCCEEEEccHHhCCc
Confidence 25666664432222211 11223478999999987654
No 247
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=80.23 E-value=6.8 Score=34.85 Aligned_cols=74 Identities=20% Similarity=0.332 Sum_probs=53.0
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHHH---Hh-cCCcEEEEccHHHHHHHHccccCCCCc
Q 013176 100 GPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRD---LR-RGVEIVIATPGRLIDMLEAQHTNLRRV 175 (448)
Q Consensus 100 ~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~ 175 (448)
+.++||.|+++.-++.+.+.+... ++.+..++|+.+..+.... +. ...+|+|+| +.+. ...++..+
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT-----~va~-~Gidi~~v 97 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVAT-----DVAA-RGLDIPQV 97 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTT----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEEC-----STTT-CSTTCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEe-----chhh-cCccccce
Confidence 456999999999988888877663 6788899998876554333 22 357899999 3333 35677888
Q ss_pred cEEEEecc
Q 013176 176 TYLVLDEA 183 (448)
Q Consensus 176 ~~iIvDE~ 183 (448)
++||.=+.
T Consensus 98 ~~VI~~d~ 105 (300)
T 3i32_A 98 DLVVHYRM 105 (300)
T ss_dssp SEEEESSC
T ss_pred eEEEEcCC
Confidence 88875333
No 248
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=80.16 E-value=3.6 Score=44.54 Aligned_cols=59 Identities=14% Similarity=0.007 Sum_probs=43.0
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhcCC----CccCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013176 65 RDLIGIAETGSGKTLSYLLPAFVHVSAQP----RLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~l~~l~~~~~~~----~~~~~~~~~vlil~P~~~L~~q~~~~~~~~ 123 (448)
...+|.|+.|||||.+..--++..+.... ....-...++|+++=|+.-+.++.+++.+.
T Consensus 17 g~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~ 79 (1180)
T 1w36_B 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 (1180)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHH
Confidence 35699999999999987777777665321 000112457999999999999999988764
No 249
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=79.94 E-value=6.1 Score=37.42 Aligned_cols=72 Identities=22% Similarity=0.323 Sum_probs=53.0
Q ss_pred cCCcEEEEecchhHHHHHHHHHHhC-CC---CeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEe-cccc-----CCCCCCC
Q 013176 271 DGSRILIFTETKKGCDQVTRQLRMD-GW---PALSIHGDKNQSERDWVLAEFRSGRSPIMTAT-DVAA-----RGLDVKD 340 (448)
Q Consensus 271 ~~~k~lVf~~~~~~~~~l~~~L~~~-~~---~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T-~~~~-----~Gidi~~ 340 (448)
.+.++||.|+++.-+..+++.+++. +. .+..++|+....++..... ..+|+|+| +.+. ..++...
T Consensus 51 ~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-----~~~ivv~T~~~l~~~~~~~~~~~~~ 125 (494)
T 1wp9_A 51 YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-----RAKVIVATPQTIENDLLAGRISLED 125 (494)
T ss_dssp SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSCCTTS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-----CCCEEEecHHHHHHHHhcCCcchhh
Confidence 5779999999999999999988775 55 7899999998876654433 46799999 3322 1355666
Q ss_pred ccEEEEc
Q 013176 341 IKCVVNY 347 (448)
Q Consensus 341 ~~~Vi~~ 347 (448)
+++||.=
T Consensus 126 ~~~vIiD 132 (494)
T 1wp9_A 126 VSLIVFD 132 (494)
T ss_dssp CSEEEEE
T ss_pred ceEEEEE
Confidence 7777643
No 250
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=79.64 E-value=1.1 Score=43.38 Aligned_cols=27 Identities=22% Similarity=0.220 Sum_probs=21.4
Q ss_pred HHhHHHHhhcCCcEEEEcCCCChHHHH
Q 013176 54 QAQGWPMALKGRDLIGIAETGSGKTLS 80 (448)
Q Consensus 54 Q~~~i~~~~~~~~~lv~~~tGsGKT~~ 80 (448)
=..++..+..+.++++.||+|+|||..
T Consensus 31 i~~l~~al~~~~~VLL~GpPGtGKT~L 57 (500)
T 3nbx_X 31 IRLCLLAALSGESVFLLGPPGIAKSLI 57 (500)
T ss_dssp HHHHHHHHHHTCEEEEECCSSSSHHHH
T ss_pred HHHHHHHHhcCCeeEeecCchHHHHHH
Confidence 344555566788999999999999975
No 251
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=79.60 E-value=1.4 Score=37.80 Aligned_cols=52 Identities=19% Similarity=0.181 Sum_probs=29.1
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHH
Q 013176 63 KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALK 122 (448)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~ 122 (448)
.+.-+++.|++|+|||..++-.+.+.+... +..++|+.-. .-..++.+.+..
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~-------~~~v~~~s~E-~~~~~~~~~~~~ 80 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEY-------GEPGVFVTLE-ERARDLRREMAS 80 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHH-------CCCEEEEESS-SCHHHHHHHHHT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhc-------CCCceeeccc-CCHHHHHHHHHH
Confidence 345688889999999965433233323221 3446666542 224455555544
No 252
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=79.13 E-value=4.5 Score=38.32 Aligned_cols=68 Identities=16% Similarity=0.167 Sum_probs=46.0
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHHHHh-cCCcEEEEccHHHHHHHHccccCCCCccEE
Q 013176 100 GPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLR-RGVEIVIATPGRLIDMLEAQHTNLRRVTYL 178 (448)
Q Consensus 100 ~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~~~i 178 (448)
+.+++|+||++.-++++++.++.. ++++..++|.. .......+. ...+|+|+| +.+. ..+++. +++|
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~~-R~~~~~~F~~g~~~vLVaT-----~v~e-~GiDip-v~~V 244 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRKT-FEREYPTIKQKKPDFILAT-----DIAE-MGANLC-VERV 244 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSSS-CC--------CCCSEEEES-----SSTT-CCTTCC-CSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecchh-HHHHHhhhcCCCceEEEEC-----Chhh-eeeccC-ceEE
Confidence 567999999999999999998885 67788888843 323344444 357999999 3333 345677 7777
Q ss_pred E
Q 013176 179 V 179 (448)
Q Consensus 179 I 179 (448)
|
T Consensus 245 I 245 (440)
T 1yks_A 245 L 245 (440)
T ss_dssp E
T ss_pred E
Confidence 6
No 253
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=78.66 E-value=4.5 Score=47.91 Aligned_cols=49 Identities=12% Similarity=0.120 Sum_probs=35.8
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHh----HHHHhhcCCcEEEEcCCCChHHHHHHH
Q 013176 34 FPDYCLEVIAKLGFVEPTPIQAQ----GWPMALKGRDLIGIAETGSGKTLSYLL 83 (448)
Q Consensus 34 l~~~l~~~~~~~~~~~~~~~Q~~----~i~~~~~~~~~lv~~~tGsGKT~~~~l 83 (448)
|.+.+.+.+..+|+ .+.+.+.. ..+.+..+..++++||||+|||.++-.
T Consensus 873 l~~ai~~~~~~~~L-~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~ 925 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHL-VTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEV 925 (3245)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHH
T ss_pred HHHHHHHHHHHcCC-ccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHH
Confidence 33556677788898 77776643 334455677899999999999987653
No 254
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=78.50 E-value=1.4 Score=36.56 Aligned_cols=20 Identities=20% Similarity=0.008 Sum_probs=16.4
Q ss_pred cCCcEEEEcCCCChHHHHHH
Q 013176 63 KGRDLIGIAETGSGKTLSYL 82 (448)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~~ 82 (448)
.++.+++.|++|+|||..+-
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~ 43 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGK 43 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHH
Confidence 45678999999999998643
No 255
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=78.27 E-value=4.8 Score=34.12 Aligned_cols=73 Identities=22% Similarity=0.237 Sum_probs=49.8
Q ss_pred cCCcEEEEecchhHHHHHHHHHHhC----CCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEec-cc----cC--CCCCC
Q 013176 271 DGSRILIFTETKKGCDQVTRQLRMD----GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD-VA----AR--GLDVK 339 (448)
Q Consensus 271 ~~~k~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-~~----~~--Gidi~ 339 (448)
.+.++||.+++++-+..+++.+++. ++.+..++|+.+.......+ +..+|+|+|. .+ .. .+++.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~ 170 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHAT 170 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcccc
Confidence 3568999999999999999888764 46788888887655433322 3678999993 22 12 36666
Q ss_pred CccEEEEcC
Q 013176 340 DIKCVVNYD 348 (448)
Q Consensus 340 ~~~~Vi~~~ 348 (448)
++++||.=.
T Consensus 171 ~~~~lViDE 179 (236)
T 2pl3_A 171 DLQMLVLDE 179 (236)
T ss_dssp TCCEEEETT
T ss_pred cccEEEEeC
Confidence 777776433
No 256
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=78.24 E-value=2.4 Score=35.89 Aligned_cols=22 Identities=32% Similarity=0.317 Sum_probs=16.6
Q ss_pred cEEEEcCCCChHHHHHHHHHHH
Q 013176 66 DLIGIAETGSGKTLSYLLPAFV 87 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~~~l~~l~ 87 (448)
++++.++.|+|||..++-.+..
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~ 29 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHA 29 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 5788899999999875543333
No 257
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=78.14 E-value=2.4 Score=37.76 Aligned_cols=20 Identities=25% Similarity=0.383 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCChHHHHHHH
Q 013176 64 GRDLIGIAETGSGKTLSYLL 83 (448)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~l 83 (448)
++.+++++++|+|||.....
T Consensus 105 g~vi~lvG~~GsGKTTl~~~ 124 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAK 124 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 34678889999999976443
No 258
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=78.07 E-value=2.3 Score=36.85 Aligned_cols=19 Identities=26% Similarity=0.315 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 013176 64 GRDLIGIAETGSGKTLSYL 82 (448)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~ 82 (448)
...+++.||+|+|||..+-
T Consensus 39 ~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCEEEEESCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4579999999999997643
No 259
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=78.03 E-value=1.5 Score=35.70 Aligned_cols=18 Identities=17% Similarity=0.316 Sum_probs=14.9
Q ss_pred cCCcEEEEcCCCChHHHH
Q 013176 63 KGRDLIGIAETGSGKTLS 80 (448)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~ 80 (448)
.++-++++||+|+|||..
T Consensus 4 ~g~~i~i~GpsGsGKSTL 21 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHI 21 (180)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 455688899999999975
No 260
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=77.94 E-value=5.4 Score=35.38 Aligned_cols=19 Identities=32% Similarity=0.366 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 013176 64 GRDLIGIAETGSGKTLSYL 82 (448)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~ 82 (448)
..++++.||+|+|||..+-
T Consensus 50 ~~~vll~G~~GtGKT~la~ 68 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIAR 68 (310)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4689999999999997643
No 261
>2pne_A 6.5 kDa glycine-rich antifreeze protein; chemical protein synthesis, native chemical ligation; 0.98A {Synthetic} PDB: 3boi_A 3bog_A* 3bog_C*
Probab=77.87 E-value=2.7 Score=26.50 Aligned_cols=16 Identities=38% Similarity=0.563 Sum_probs=6.9
Q ss_pred CCCCCCCCCCCCccCCC
Q 013176 428 FGIRSSMSGSNTIPLGS 444 (448)
Q Consensus 428 ~g~~~~~~~~~~~~~~~ 444 (448)
.|+++|.+|+ ..|+|.
T Consensus 59 vggrggkggs-gtpkga 74 (81)
T 2pne_A 59 VGGRGGKGGS-GTPKGA 74 (81)
T ss_dssp CCCCCCCCCC-SSSCCC
T ss_pred ccCCCCCCCC-CCcCCC
Confidence 3444444443 345543
No 262
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=77.58 E-value=3 Score=35.05 Aligned_cols=73 Identities=15% Similarity=0.146 Sum_probs=45.2
Q ss_pred cCCcEEEEecchhHHHHHHHHHHhC----CCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEecc-c-----cCCCCCCC
Q 013176 271 DGSRILIFTETKKGCDQVTRQLRMD----GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDV-A-----ARGLDVKD 340 (448)
Q Consensus 271 ~~~k~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~-~-----~~Gidi~~ 340 (448)
.+.++||.++++..+.++++.+++. +..+..++|+.+..+... .+. ..+|+|+|.- + ...+++..
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~--~~~iiv~Tp~~l~~~~~~~~~~~~~ 155 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAE---GLR--DAQIVVGTPGRVFDNIQRRRFRTDK 155 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT--TCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHh---cCC--CCCEEEECHHHHHHHHHhCCcchhh
Confidence 3558999999999999988887653 677888888776544332 222 3789999932 1 23556667
Q ss_pred ccEEEEcC
Q 013176 341 IKCVVNYD 348 (448)
Q Consensus 341 ~~~Vi~~~ 348 (448)
+++||.=.
T Consensus 156 ~~~iViDE 163 (224)
T 1qde_A 156 IKMFILDE 163 (224)
T ss_dssp CCEEEEET
T ss_pred CcEEEEcC
Confidence 77777433
No 263
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=77.43 E-value=1.3 Score=40.12 Aligned_cols=17 Identities=29% Similarity=0.397 Sum_probs=14.0
Q ss_pred cEEEEcCCCChHHHHHH
Q 013176 66 DLIGIAETGSGKTLSYL 82 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~~~ 82 (448)
-++|.||||+|||..+.
T Consensus 42 lIvI~GPTgsGKTtLa~ 58 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSI 58 (339)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 57888999999997643
No 264
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=77.30 E-value=1.3 Score=36.79 Aligned_cols=17 Identities=24% Similarity=0.477 Sum_probs=14.2
Q ss_pred CCcEEEEcCCCChHHHH
Q 013176 64 GRDLIGIAETGSGKTLS 80 (448)
Q Consensus 64 ~~~~lv~~~tGsGKT~~ 80 (448)
++.+++.+|||+|||..
T Consensus 34 g~~ilI~GpsGsGKStL 50 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSET 50 (205)
T ss_dssp TEEEEEECCCTTTTHHH
T ss_pred CEEEEEECCCCCCHHHH
Confidence 35688999999999965
No 265
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=77.12 E-value=2.7 Score=36.96 Aligned_cols=53 Identities=13% Similarity=0.085 Sum_probs=31.6
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHHhHHHHhh--cCCcEEEEcCCCChHHHH
Q 013176 25 PIRIFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMAL--KGRDLIGIAETGSGKTLS 80 (448)
Q Consensus 25 p~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~i~~~~--~~~~~lv~~~tGsGKT~~ 80 (448)
|..+|+++.-.+...+.++..-. .. -....+..+- -.+.+++.+|+|+|||..
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~--~~-~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl 89 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVE--FL-KNPSRFHEMGARIPKGVLLVGPPGVGKTHL 89 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHH--HH-HCHHHHHHTTCCCCCEEEEECCTTSSHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHH--HH-HCHHHHHHcCCCCCCeEEEECCCcChHHHH
Confidence 66788888777777666654211 00 0112233221 124589999999999975
No 266
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=76.60 E-value=1.6 Score=40.22 Aligned_cols=21 Identities=38% Similarity=0.363 Sum_probs=17.5
Q ss_pred HhhcCCcEEEEcCCCChHHHH
Q 013176 60 MALKGRDLIGIAETGSGKTLS 80 (448)
Q Consensus 60 ~~~~~~~~lv~~~tGsGKT~~ 80 (448)
.+..+..+++++|||+|||..
T Consensus 171 ~i~~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 171 AVQLERVIVVAGETGSGKTTL 191 (361)
T ss_dssp HHHTTCCEEEEESSSSCHHHH
T ss_pred HHhcCCEEEEECCCCCCHHHH
Confidence 345678999999999999974
No 267
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=76.51 E-value=1.7 Score=36.09 Aligned_cols=18 Identities=22% Similarity=0.318 Sum_probs=14.2
Q ss_pred cCCcEEEEcCCCChHHHH
Q 013176 63 KGRDLIGIAETGSGKTLS 80 (448)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~ 80 (448)
.++-+.++||+|+|||..
T Consensus 3 ~g~~i~lvGpsGaGKSTL 20 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTL 20 (198)
T ss_dssp --CCEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 456789999999999975
No 268
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=76.36 E-value=1.5 Score=35.50 Aligned_cols=20 Identities=20% Similarity=0.074 Sum_probs=16.4
Q ss_pred cCCcEEEEcCCCChHHHHHH
Q 013176 63 KGRDLIGIAETGSGKTLSYL 82 (448)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~~ 82 (448)
....+++.|++|+|||..+-
T Consensus 10 ~~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHH
Confidence 45679999999999998643
No 269
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=76.19 E-value=2 Score=38.51 Aligned_cols=19 Identities=21% Similarity=0.366 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCChHHHHH
Q 013176 63 KGRDLIGIAETGSGKTLSY 81 (448)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~ 81 (448)
...++++.|++|+|||..+
T Consensus 24 ~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp TTSCEEEESCTTSCHHHHH
T ss_pred CCCcEEEECCCCchHHHHH
Confidence 3568999999999999753
No 270
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=75.82 E-value=1.8 Score=35.25 Aligned_cols=19 Identities=26% Similarity=0.128 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 013176 64 GRDLIGIAETGSGKTLSYL 82 (448)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~ 82 (448)
.+.+++.|++|||||..+-
T Consensus 5 ~~~i~l~G~~GsGKst~a~ 23 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGS 23 (185)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 3568899999999998644
No 271
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=75.80 E-value=1.9 Score=35.12 Aligned_cols=45 Identities=18% Similarity=0.224 Sum_probs=22.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHHHHh
Q 013176 67 LIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKF 123 (448)
Q Consensus 67 ~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~~~~ 123 (448)
++|.+++|||||.-+. .+. .. +..++++......-.++.+++..+
T Consensus 2 ilV~Gg~~SGKS~~A~-~la----~~-------~~~~~yiaT~~~~d~e~~~rI~~h 46 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAE-ALI----GD-------APQVLYIATSQILDDEMAARIQHH 46 (180)
T ss_dssp EEEEECTTSSHHHHHH-HHH----CS-------CSSEEEEECCCC------CHHHHH
T ss_pred EEEECCCCCcHHHHHH-HHH----hc-------CCCeEEEecCCCCCHHHHHHHHHH
Confidence 5889999999996432 221 11 123677766443334444444443
No 272
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=75.57 E-value=28 Score=33.07 Aligned_cols=26 Identities=23% Similarity=0.171 Sum_probs=19.9
Q ss_pred HHHHhhcCCcEEEEcCCCChHHHHHH
Q 013176 57 GWPMALKGRDLIGIAETGSGKTLSYL 82 (448)
Q Consensus 57 ~i~~~~~~~~~lv~~~tGsGKT~~~~ 82 (448)
.+..+.+++..++.++.|+|||..+.
T Consensus 144 ~L~pi~kGq~~~i~G~sGvGKTtL~~ 169 (473)
T 1sky_E 144 LLAPYIKGGKIGLFGGAGVGKTVLIQ 169 (473)
T ss_dssp HHSCEETTCEEEEECCSSSCHHHHHH
T ss_pred HHhhhccCCEEEEECCCCCCccHHHH
Confidence 33344568899999999999997544
No 273
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=75.30 E-value=1.6 Score=39.00 Aligned_cols=17 Identities=24% Similarity=0.182 Sum_probs=13.5
Q ss_pred cEEEEcCCCChHHHHHH
Q 013176 66 DLIGIAETGSGKTLSYL 82 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~~~ 82 (448)
-++|.||||+|||..+.
T Consensus 5 ~i~i~GptgsGKt~la~ 21 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSV 21 (322)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCcCCHHHHHH
Confidence 46778999999997643
No 274
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=75.18 E-value=59 Score=32.46 Aligned_cols=77 Identities=17% Similarity=0.286 Sum_probs=57.1
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHHH---Hh-cCCcEEEEccHHHHHHHHccccCCCCc
Q 013176 100 GPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRD---LR-RGVEIVIATPGRLIDMLEAQHTNLRRV 175 (448)
Q Consensus 100 ~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~ 175 (448)
+.++||.|+|+.-++.+.+.+... ++++..++++.+..+.... +. ...+|+|+|. .+ ...+++.++
T Consensus 445 ~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~-----~l-~~GlDip~v 514 (661)
T 2d7d_A 445 NERVLVTTLTKKMSEDLTDYLKEI----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN-----LL-REGLDIPEV 514 (661)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC-----CC-STTCCCTTE
T ss_pred CCeEEEEECCHHHHHHHHHHHHhc----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc-----hh-hCCcccCCC
Confidence 568999999999999998888874 6777888877655443322 33 3578999993 22 345678889
Q ss_pred cEEEEeccccc
Q 013176 176 TYLVLDEADRM 186 (448)
Q Consensus 176 ~~iIvDE~h~~ 186 (448)
+++|+-+++..
T Consensus 515 ~lVi~~d~d~~ 525 (661)
T 2d7d_A 515 SLVAILDADKE 525 (661)
T ss_dssp EEEEETTTTCC
T ss_pred CEEEEeCcccc
Confidence 99999988754
No 275
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=74.94 E-value=1.9 Score=35.83 Aligned_cols=21 Identities=19% Similarity=0.147 Sum_probs=17.1
Q ss_pred hhcCCcEEEEcCCCChHHHHH
Q 013176 61 ALKGRDLIGIAETGSGKTLSY 81 (448)
Q Consensus 61 ~~~~~~~lv~~~tGsGKT~~~ 81 (448)
+..+.-++++||+|+|||...
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHH
Confidence 456677899999999999753
No 276
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=74.92 E-value=1.7 Score=38.82 Aligned_cols=17 Identities=29% Similarity=0.323 Sum_probs=13.5
Q ss_pred cEEEEcCCCChHHHHHH
Q 013176 66 DLIGIAETGSGKTLSYL 82 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~~~ 82 (448)
-++|++|||+|||..+.
T Consensus 12 ~i~i~GptgsGKt~la~ 28 (316)
T 3foz_A 12 AIFLMGPTASGKTALAI 28 (316)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCccCHHHHHH
Confidence 36778999999997643
No 277
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=74.54 E-value=2.1 Score=35.83 Aligned_cols=18 Identities=22% Similarity=0.303 Sum_probs=14.6
Q ss_pred cCCcEEEEcCCCChHHHH
Q 013176 63 KGRDLIGIAETGSGKTLS 80 (448)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~ 80 (448)
.+.-+++.||+|+|||..
T Consensus 7 ~g~~i~l~GpsGsGKsTl 24 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTV 24 (208)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECcCCCCHHHH
Confidence 345678889999999975
No 278
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=74.53 E-value=1.8 Score=37.58 Aligned_cols=16 Identities=31% Similarity=0.125 Sum_probs=13.3
Q ss_pred EEEEcCCCChHHHHHH
Q 013176 67 LIGIAETGSGKTLSYL 82 (448)
Q Consensus 67 ~lv~~~tGsGKT~~~~ 82 (448)
+++.||+|||||..+.
T Consensus 4 i~I~G~~GSGKSTla~ 19 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAI 19 (253)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCCcCHHHHHH
Confidence 6788999999997543
No 279
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=74.46 E-value=1.8 Score=37.50 Aligned_cols=55 Identities=24% Similarity=0.234 Sum_probs=28.6
Q ss_pred CcccccccCCCCHHHHHHHHHCC--CCCCcHHHHhHHHHhhcCCcEEEEcCCCChHHHHH
Q 013176 24 RPIRIFQEANFPDYCLEVIAKLG--FVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSY 81 (448)
Q Consensus 24 ~p~~~~~~~~l~~~l~~~~~~~~--~~~~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~ 81 (448)
.|..+|+++.-.+...+.+...- +..+..++.- .....+.+++.||+|+|||..+
T Consensus 6 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 6 QIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKL---GGKIPKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp SSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC--------CCCCEEEEECCTTSCHHHHH
T ss_pred CCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHc---CCCCCCeEEEECcCCCCHHHHH
Confidence 34567888765555555544310 0001000000 0112357999999999999753
No 280
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=74.44 E-value=46 Score=30.16 Aligned_cols=76 Identities=14% Similarity=0.150 Sum_probs=55.0
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhH---HHHh-cCCcEEEEccHHHHHHHHccccCCCCc
Q 013176 100 GPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQI---RDLR-RGVEIVIATPGRLIDMLEAQHTNLRRV 175 (448)
Q Consensus 100 ~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~ 175 (448)
..++||.++++.-+..+.+.++.. +..+..++++.+..+.. ..+. ...+|+|+|. . ....+++.++
T Consensus 243 ~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~-~~~Gidip~~ 312 (395)
T 3pey_A 243 IGSSIIFVATKKTANVLYGKLKSE----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN-----V-LARGIDIPTV 312 (395)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG-----G-GSSSCCCTTE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhc----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC-----h-hhcCCCcccC
Confidence 568999999999999999888874 56778888887654433 2333 3578999993 3 2345678888
Q ss_pred cEEEEecccc
Q 013176 176 TYLVLDEADR 185 (448)
Q Consensus 176 ~~iIvDE~h~ 185 (448)
++||.-+...
T Consensus 313 ~~Vi~~~~p~ 322 (395)
T 3pey_A 313 SMVVNYDLPT 322 (395)
T ss_dssp EEEEESSCCB
T ss_pred CEEEEcCCCC
Confidence 9888765543
No 281
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=74.30 E-value=11 Score=34.15 Aligned_cols=73 Identities=14% Similarity=0.242 Sum_probs=51.7
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHH---HHh-cCCcEEEEccHHHHHHHHccccCCCCc
Q 013176 100 GPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIR---DLR-RGVEIVIATPGRLIDMLEAQHTNLRRV 175 (448)
Q Consensus 100 ~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~ 175 (448)
+.++||.++++.-+..+.+.+++. +..+..++++.+..+... .+. ...+|+|+|. .+. ...++.++
T Consensus 238 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~-~Gid~~~~ 307 (367)
T 1hv8_A 238 EFYGLVFCKTKRDTKELASMLRDI----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-----VMS-RGIDVNDL 307 (367)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-----THH-HHCCCSCC
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhh-cCCCcccC
Confidence 567999999999999999888874 667888888876544332 232 3578999993 222 24567778
Q ss_pred cEEEEec
Q 013176 176 TYLVLDE 182 (448)
Q Consensus 176 ~~iIvDE 182 (448)
+++|.-+
T Consensus 308 ~~Vi~~~ 314 (367)
T 1hv8_A 308 NCVINYH 314 (367)
T ss_dssp SEEEESS
T ss_pred CEEEEec
Confidence 8887543
No 282
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=74.29 E-value=1.4 Score=48.28 Aligned_cols=27 Identities=19% Similarity=0.318 Sum_probs=19.4
Q ss_pred hhcCCcEEEEcCCCChHHHHHHHHHHHHh
Q 013176 61 ALKGRDLIGIAETGSGKTLSYLLPAFVHV 89 (448)
Q Consensus 61 ~~~~~~~lv~~~tGsGKT~~~~l~~l~~~ 89 (448)
+..|+.+.++|+||+|||.. +.++..+
T Consensus 1102 I~~Ge~vaIVG~SGsGKSTL--~~lL~rl 1128 (1321)
T 4f4c_A 1102 VEPGQTLALVGPSGCGKSTV--VALLERF 1128 (1321)
T ss_dssp ECTTCEEEEECSTTSSTTSH--HHHHTTS
T ss_pred ECCCCEEEEECCCCChHHHH--HHHHhcC
Confidence 34577899999999999964 3344443
No 283
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=74.24 E-value=1.5 Score=35.18 Aligned_cols=17 Identities=24% Similarity=0.128 Sum_probs=13.7
Q ss_pred cEEEEcCCCChHHHHHH
Q 013176 66 DLIGIAETGSGKTLSYL 82 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~~~ 82 (448)
-+++.|++|||||..+-
T Consensus 3 ~I~l~G~~GsGKsT~a~ 19 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAK 19 (179)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36788999999998543
No 284
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=74.09 E-value=1.7 Score=38.66 Aligned_cols=18 Identities=22% Similarity=0.076 Sum_probs=14.8
Q ss_pred CcEEEEcCCCChHHHHHH
Q 013176 65 RDLIGIAETGSGKTLSYL 82 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~ 82 (448)
..+++.||+|+|||..+-
T Consensus 37 ~~lLl~GppGtGKT~la~ 54 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCE 54 (293)
T ss_dssp SEEEEEECTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468889999999997643
No 285
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=74.08 E-value=3.7 Score=29.92 Aligned_cols=46 Identities=13% Similarity=0.221 Sum_probs=35.8
Q ss_pred HHHHHHhhhcCCcEEEEecchhHHHHHHHHHHhCCCC-eEEEcCCCC
Q 013176 262 LIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWP-ALSIHGDKN 307 (448)
Q Consensus 262 l~~~l~~~~~~~k~lVf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~ 307 (448)
+...+.+...+++++|||.+-..+...+..|++.|+. +..+.|++.
T Consensus 48 l~~~~~~l~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T 1gmx_A 48 LGAFMRDNDFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFE 94 (108)
T ss_dssp HHHHHHHSCTTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred HHHHHHhcCCCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHH
Confidence 3344444456779999999988899999999999985 888888764
No 286
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=74.00 E-value=1.8 Score=38.37 Aligned_cols=55 Identities=15% Similarity=0.151 Sum_probs=29.9
Q ss_pred CcccccccCCCCHHHHHHHHHCCCCCCcHHH-HhHHHHh-hcCCcEEEEcCCCChHHHHH
Q 013176 24 RPIRIFQEANFPDYCLEVIAKLGFVEPTPIQ-AQGWPMA-LKGRDLIGIAETGSGKTLSY 81 (448)
Q Consensus 24 ~p~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q-~~~i~~~-~~~~~~lv~~~tGsGKT~~~ 81 (448)
.|..+|+++.=.+...+.+...=. .+.. .+.+..+ .....+++.||+|+|||..+
T Consensus 15 ~~~~~~~~i~G~~~~~~~l~~~i~---~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 15 GAKVEWTDIAGQDVAKQALQEMVI---LPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp SSCCCGGGSCCCHHHHHHHHHHTH---HHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred CCCCCHHHhCChHHHHHHHHHHHH---hhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 455678876555555555543200 0000 0000111 13468999999999999754
No 287
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=73.99 E-value=1.7 Score=35.06 Aligned_cols=17 Identities=24% Similarity=0.159 Sum_probs=14.1
Q ss_pred CcEEEEcCCCChHHHHH
Q 013176 65 RDLIGIAETGSGKTLSY 81 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~ 81 (448)
.-+++.|++|||||.++
T Consensus 4 ~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45788999999999764
No 288
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=73.89 E-value=3.3 Score=34.62 Aligned_cols=21 Identities=29% Similarity=0.045 Sum_probs=16.2
Q ss_pred cCCcEEEEcCCCChHHHHHHH
Q 013176 63 KGRDLIGIAETGSGKTLSYLL 83 (448)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~~l 83 (448)
.+.-+++.+|+|+|||..+..
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~ 39 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQ 39 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 445688899999999975443
No 289
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=73.83 E-value=2.1 Score=35.38 Aligned_cols=18 Identities=39% Similarity=0.351 Sum_probs=15.0
Q ss_pred cCCcEEEEcCCCChHHHH
Q 013176 63 KGRDLIGIAETGSGKTLS 80 (448)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~ 80 (448)
.+.-+.+.||+|+|||..
T Consensus 6 ~g~ii~l~Gp~GsGKSTl 23 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSL 23 (205)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECcCCCCHHHH
Confidence 456678889999999975
No 290
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=73.61 E-value=1.6 Score=35.73 Aligned_cols=19 Identities=37% Similarity=0.433 Sum_probs=15.5
Q ss_pred hcCCcEEEEcCCCChHHHH
Q 013176 62 LKGRDLIGIAETGSGKTLS 80 (448)
Q Consensus 62 ~~~~~~lv~~~tGsGKT~~ 80 (448)
..+.-+++.||+|+|||..
T Consensus 7 ~~g~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTI 25 (191)
T ss_dssp CTTEEEEEEECTTSCHHHH
T ss_pred CCCeEEEEECCCCCCHHHH
Confidence 3456688899999999974
No 291
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=73.41 E-value=2.3 Score=38.91 Aligned_cols=24 Identities=33% Similarity=0.547 Sum_probs=16.8
Q ss_pred HHHhhcCCc--EEEEcCCCChHHHHH
Q 013176 58 WPMALKGRD--LIGIAETGSGKTLSY 81 (448)
Q Consensus 58 i~~~~~~~~--~lv~~~tGsGKT~~~ 81 (448)
+..+++|.+ ++..+.||||||.+.
T Consensus 97 v~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 97 VSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 344556654 455599999999873
No 292
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=73.28 E-value=1.6 Score=39.69 Aligned_cols=19 Identities=42% Similarity=0.541 Sum_probs=16.6
Q ss_pred hhcCCcEEEEcCCCChHHH
Q 013176 61 ALKGRDLIGIAETGSGKTL 79 (448)
Q Consensus 61 ~~~~~~~lv~~~tGsGKT~ 79 (448)
+..+..+++.+|||||||.
T Consensus 168 i~~g~~v~i~G~~GsGKTT 186 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTT 186 (330)
T ss_dssp HHHTCCEEEEESTTSCHHH
T ss_pred ccCCCEEEEECCCCCCHHH
Confidence 4467899999999999997
No 293
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=73.28 E-value=2.5 Score=33.85 Aligned_cols=18 Identities=22% Similarity=0.364 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCChHHHHH
Q 013176 64 GRDLIGIAETGSGKTLSY 81 (448)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~ 81 (448)
+..+++.|+.|||||...
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 356889999999999753
No 294
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=73.14 E-value=2.1 Score=32.36 Aligned_cols=46 Identities=15% Similarity=0.163 Sum_probs=35.3
Q ss_pred HHHHHHhhhcCCcEEEEecchhH--HHHHHHHHHhCCCCeEEEcCCCC
Q 013176 262 LIKLLKEVMDGSRILIFTETKKG--CDQVTRQLRMDGWPALSIHGDKN 307 (448)
Q Consensus 262 l~~~l~~~~~~~k~lVf~~~~~~--~~~l~~~L~~~~~~~~~~~~~~~ 307 (448)
+...+.....+++++|||.+-.. +...+..|++.|+++..+.|++.
T Consensus 61 l~~~~~~l~~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~ 108 (124)
T 3flh_A 61 LATRIGELDPAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALE 108 (124)
T ss_dssp HHHHGGGSCTTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHH
T ss_pred HHHHHhcCCCCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHH
Confidence 33444444457789999998776 78899999999999888888654
No 295
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=72.88 E-value=3.5 Score=37.79 Aligned_cols=38 Identities=21% Similarity=0.139 Sum_probs=24.4
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcC
Q 013176 63 KGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAP 108 (448)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P 108 (448)
.+.-+++.+++|+|||..++-.+.. +... +..++|+..
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~-~~~~-------g~~vlyid~ 99 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAA-AQRE-------GKTCAFIDA 99 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHH-HHHT-------TCCEEEEES
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH-HHHC-------CCeEEEEeC
Confidence 3456888899999999765443333 3222 345777765
No 296
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=72.83 E-value=14 Score=34.13 Aligned_cols=72 Identities=15% Similarity=0.188 Sum_probs=52.6
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHH---HHh-cCCcEEEEccHHHHHHHHccccCCCCc
Q 013176 100 GPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIR---DLR-RGVEIVIATPGRLIDMLEAQHTNLRRV 175 (448)
Q Consensus 100 ~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~ 175 (448)
..++||.|+++.-+..+++.+.+. ++.+..++++.+..+... .+. ...+|+|+| +.+ ...+++.++
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~-~~Gidip~~ 335 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTT-----NVC-ARGIDVEQV 335 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEEC-----GGG-TSSCCCTTE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEc-----Ccc-ccCCCccCC
Confidence 457999999999999999998875 567788888876654432 233 357899999 333 345678888
Q ss_pred cEEEEe
Q 013176 176 TYLVLD 181 (448)
Q Consensus 176 ~~iIvD 181 (448)
++||.-
T Consensus 336 ~~Vi~~ 341 (412)
T 3fht_A 336 SVVINF 341 (412)
T ss_dssp EEEEES
T ss_pred CEEEEE
Confidence 888743
No 297
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=72.63 E-value=2.3 Score=35.18 Aligned_cols=20 Identities=25% Similarity=0.205 Sum_probs=15.8
Q ss_pred hcCCcEEEEcCCCChHHHHH
Q 013176 62 LKGRDLIGIAETGSGKTLSY 81 (448)
Q Consensus 62 ~~~~~~lv~~~tGsGKT~~~ 81 (448)
..+.-+.+.||+|||||..+
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 34566888999999999753
No 298
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=72.53 E-value=2.5 Score=34.49 Aligned_cols=19 Identities=26% Similarity=0.340 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 013176 64 GRDLIGIAETGSGKTLSYL 82 (448)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~ 82 (448)
+..+++.|++|||||.+.-
T Consensus 10 ~~~I~l~G~~GsGKSTv~~ 28 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAE 28 (184)
T ss_dssp SCEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4578999999999998643
No 299
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=72.44 E-value=8.4 Score=26.44 Aligned_cols=44 Identities=9% Similarity=0.171 Sum_probs=32.2
Q ss_pred HHHHHhh--hcCCcEEEEecchhHHHHHHHHHHhCCCC-eEEEcCCCC
Q 013176 263 IKLLKEV--MDGSRILIFTETKKGCDQVTRQLRMDGWP-ALSIHGDKN 307 (448)
Q Consensus 263 ~~~l~~~--~~~~k~lVf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~ 307 (448)
.+.+.+. ..+.+++++|.+-..+...+..|++.|++ +..+ |++.
T Consensus 30 ~~~~~~l~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~ 76 (85)
T 2jtq_A 30 KERIATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLK 76 (85)
T ss_dssp HHHHHHHCCCTTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETT
T ss_pred HHHHHHhCCCCCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHH
Confidence 3444444 45678999999988889999999999885 5555 5543
No 300
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=71.99 E-value=4 Score=36.14 Aligned_cols=22 Identities=23% Similarity=0.237 Sum_probs=17.0
Q ss_pred hhcCCcEEEEcCCCChHHHHHH
Q 013176 61 ALKGRDLIGIAETGSGKTLSYL 82 (448)
Q Consensus 61 ~~~~~~~lv~~~tGsGKT~~~~ 82 (448)
+..+.-+++.|++|+|||....
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~ 53 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVR 53 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHH
Confidence 3456678899999999997543
No 301
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=71.36 E-value=2.6 Score=38.96 Aligned_cols=19 Identities=42% Similarity=0.501 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 013176 64 GRDLIGIAETGSGKTLSYL 82 (448)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~ 82 (448)
..++++.||+|+|||..+-
T Consensus 72 ~~~ill~Gp~GtGKT~la~ 90 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQ 90 (376)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHH
Confidence 4579999999999997643
No 302
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=71.32 E-value=2 Score=39.73 Aligned_cols=19 Identities=32% Similarity=0.300 Sum_probs=15.7
Q ss_pred hcCCcEEEEcCCCChHHHH
Q 013176 62 LKGRDLIGIAETGSGKTLS 80 (448)
Q Consensus 62 ~~~~~~lv~~~tGsGKT~~ 80 (448)
..+..+++++|||||||..
T Consensus 134 ~~g~~i~ivG~~GsGKTTl 152 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTT 152 (372)
T ss_dssp SSSEEEEEECSSSSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 4556788999999999974
No 303
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=71.25 E-value=2.3 Score=38.28 Aligned_cols=17 Identities=24% Similarity=0.247 Sum_probs=14.1
Q ss_pred cEEEEcCCCChHHHHHH
Q 013176 66 DLIGIAETGSGKTLSYL 82 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~~~ 82 (448)
.++++||||+|||..+.
T Consensus 7 ~i~i~GptGsGKTtla~ 23 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAM 23 (323)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47889999999997644
No 304
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=71.19 E-value=2.9 Score=34.66 Aligned_cols=18 Identities=22% Similarity=0.409 Sum_probs=15.2
Q ss_pred cCCcEEEEcCCCChHHHH
Q 013176 63 KGRDLIGIAETGSGKTLS 80 (448)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~ 80 (448)
.++-++++||+|+|||..
T Consensus 18 ~g~~ivl~GPSGaGKsTL 35 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHI 35 (197)
T ss_dssp SCCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECcCCCCHHHH
Confidence 556788899999999975
No 305
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=70.91 E-value=6.7 Score=37.82 Aligned_cols=20 Identities=30% Similarity=0.325 Sum_probs=16.5
Q ss_pred cCCcEEEEcCCCChHHHHHH
Q 013176 63 KGRDLIGIAETGSGKTLSYL 82 (448)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~~ 82 (448)
++.+++|.++||||||.+.-
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~ 185 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVN 185 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHH
Confidence 35689999999999997643
No 306
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=70.83 E-value=4 Score=37.41 Aligned_cols=19 Identities=26% Similarity=0.352 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 013176 64 GRDLIGIAETGSGKTLSYL 82 (448)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~ 82 (448)
.+.+++.||+|+|||..+-
T Consensus 117 ~~~vLl~GppGtGKT~la~ 135 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGK 135 (357)
T ss_dssp CSEEEEESSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3579999999999997643
No 307
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=70.80 E-value=2.5 Score=30.43 Aligned_cols=38 Identities=21% Similarity=0.316 Sum_probs=32.6
Q ss_pred hcCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCC
Q 013176 270 MDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKN 307 (448)
Q Consensus 270 ~~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 307 (448)
..++++++||.+-..+...+..|++.|+++..+.|++.
T Consensus 54 ~~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 54 NDNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp CTTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 35678999999998999999999999998888888654
No 308
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=70.62 E-value=3 Score=34.64 Aligned_cols=22 Identities=27% Similarity=0.153 Sum_probs=16.0
Q ss_pred cEEEEcCCCChHHHHHHHHHHH
Q 013176 66 DLIGIAETGSGKTLSYLLPAFV 87 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~~~l~~l~ 87 (448)
-.++.|++|||||..++..+..
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 3688999999999865443333
No 309
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=70.60 E-value=3.2 Score=37.44 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=17.0
Q ss_pred HHHhhcCCc--EEEEcCCCChHHHHH
Q 013176 58 WPMALKGRD--LIGIAETGSGKTLSY 81 (448)
Q Consensus 58 i~~~~~~~~--~lv~~~tGsGKT~~~ 81 (448)
+..+++|.+ ++..|.||||||.+.
T Consensus 70 v~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 70 VKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCeEEEEEECCCCCCCceEe
Confidence 344556654 555699999999873
No 310
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=70.52 E-value=85 Score=31.35 Aligned_cols=77 Identities=18% Similarity=0.239 Sum_probs=56.0
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHHH---Hh-cCCcEEEEccHHHHHHHHccccCCCCc
Q 013176 100 GPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRD---LR-RGVEIVIATPGRLIDMLEAQHTNLRRV 175 (448)
Q Consensus 100 ~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~ 175 (448)
+.++||.|+|+.-++.+.+.+... ++++..++++.+..+.... +. ...+|+|+| +.+ ...+++.++
T Consensus 439 ~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT-----~~l-~~GlDip~v 508 (664)
T 1c4o_A 439 GERTLVTVLTVRMAEELTSFLVEH----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGI-----NLL-REGLDIPEV 508 (664)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEES-----CCC-CTTCCCTTE
T ss_pred CCEEEEEECCHHHHHHHHHHHHhc----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEcc-----Chh-hcCccCCCC
Confidence 568999999999999999888874 5677888877655443322 33 357899999 322 345677888
Q ss_pred cEEEEeccccc
Q 013176 176 TYLVLDEADRM 186 (448)
Q Consensus 176 ~~iIvDE~h~~ 186 (448)
+++|+=+++..
T Consensus 509 ~lVI~~d~d~~ 519 (664)
T 1c4o_A 509 SLVAILDADKE 519 (664)
T ss_dssp EEEEETTTTSC
T ss_pred CEEEEeCCccc
Confidence 98988887653
No 311
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=70.45 E-value=3.3 Score=37.81 Aligned_cols=25 Identities=32% Similarity=0.464 Sum_probs=18.5
Q ss_pred HHHHhhcCCc--EEEEcCCCChHHHHH
Q 013176 57 GWPMALKGRD--LIGIAETGSGKTLSY 81 (448)
Q Consensus 57 ~i~~~~~~~~--~lv~~~tGsGKT~~~ 81 (448)
.+..+++|.+ ++..+.||||||.+.
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 5556667765 455599999999874
No 312
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=70.44 E-value=11 Score=32.34 Aligned_cols=73 Identities=12% Similarity=0.059 Sum_probs=50.3
Q ss_pred CCcEEEEecchhHHHHHHHHHHhC----CCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEec-cc-----cCCCCCCCc
Q 013176 272 GSRILIFTETKKGCDQVTRQLRMD----GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD-VA-----ARGLDVKDI 341 (448)
Q Consensus 272 ~~k~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-~~-----~~Gidi~~~ 341 (448)
+.++||.+++++-+.++++.+++. +..+..++++.+....... + ....+|+|+|. .+ ...+++..+
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 175 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIRE---V-QMGCHLLVATPGRLVDFIEKNKISLEFC 175 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHH---H-SSCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHH---h-CCCCCEEEECHHHHHHHHHcCCCChhhC
Confidence 458999999999999988887653 5677888888775543322 2 34678999993 22 123566777
Q ss_pred cEEEEcC
Q 013176 342 KCVVNYD 348 (448)
Q Consensus 342 ~~Vi~~~ 348 (448)
++||.=.
T Consensus 176 ~~lViDE 182 (253)
T 1wrb_A 176 KYIVLDE 182 (253)
T ss_dssp CEEEEET
T ss_pred CEEEEeC
Confidence 7777433
No 313
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=70.43 E-value=17 Score=33.61 Aligned_cols=72 Identities=13% Similarity=0.224 Sum_probs=51.7
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHH---HHh-cCCcEEEEccHHHHHHHHccccCCCCc
Q 013176 100 GPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIR---DLR-RGVEIVIATPGRLIDMLEAQHTNLRRV 175 (448)
Q Consensus 100 ~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~ 175 (448)
..++||.|+++.-++.+.+.+... ++.+..++++.+..+... .+. ....|+|+|. .+ ...+++.++
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~Gidi~~v 345 (410)
T 2j0s_A 276 ITQAVIFCNTKRKVDWLTEKMREA----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD-----VW-ARGLDVPQV 345 (410)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG-----GG-SSSCCCTTE
T ss_pred CCcEEEEEcCHHHHHHHHHHHHhC----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC-----hh-hCcCCcccC
Confidence 347999999999999998888874 567788888876544332 222 3578999993 32 345678888
Q ss_pred cEEEEe
Q 013176 176 TYLVLD 181 (448)
Q Consensus 176 ~~iIvD 181 (448)
++||.-
T Consensus 346 ~~Vi~~ 351 (410)
T 2j0s_A 346 SLIINY 351 (410)
T ss_dssp EEEEES
T ss_pred CEEEEE
Confidence 887753
No 314
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=70.18 E-value=20 Score=26.03 Aligned_cols=56 Identities=14% Similarity=0.154 Sum_probs=40.3
Q ss_pred HHHHHHhhhcCCcEEEEec------chhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHH
Q 013176 262 LIKLLKEVMDGSRILIFTE------TKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAE 317 (448)
Q Consensus 262 l~~~l~~~~~~~k~lVf~~------~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~ 317 (448)
+.+.+++.....+++||.. .-..|....+.|.+.+++...++-...++.+..+.+.
T Consensus 7 ~~~~v~~~i~~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~ 68 (109)
T 3ipz_A 7 LKDTLEKLVNSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEY 68 (109)
T ss_dssp HHHHHHHHHTSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHccCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHH
Confidence 4455666667789999987 4788999999999998887776655555555544443
No 315
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=70.10 E-value=1.7 Score=35.00 Aligned_cols=18 Identities=28% Similarity=0.285 Sum_probs=14.7
Q ss_pred cCCcEEEEcCCCChHHHH
Q 013176 63 KGRDLIGIAETGSGKTLS 80 (448)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~ 80 (448)
++.-+.++||.|||||..
T Consensus 8 ~gei~~l~G~nGsGKSTl 25 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTF 25 (171)
T ss_dssp SSEEEEEECCTTSCHHHH
T ss_pred CCEEEEEECCCCCCHHHH
Confidence 455678899999999974
No 316
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=70.09 E-value=3.4 Score=37.69 Aligned_cols=25 Identities=32% Similarity=0.490 Sum_probs=17.9
Q ss_pred HHHHhhcCCc--EEEEcCCCChHHHHH
Q 013176 57 GWPMALKGRD--LIGIAETGSGKTLSY 81 (448)
Q Consensus 57 ~i~~~~~~~~--~lv~~~tGsGKT~~~ 81 (448)
.+..+++|.+ ++..+.||||||.+.
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEec
Confidence 4455566755 455699999999874
No 317
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=69.97 E-value=17 Score=33.41 Aligned_cols=72 Identities=6% Similarity=0.104 Sum_probs=51.5
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhH---HHHh-cCCcEEEEccHHHHHHHHccccCCCCc
Q 013176 100 GPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQI---RDLR-RGVEIVIATPGRLIDMLEAQHTNLRRV 175 (448)
Q Consensus 100 ~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~ 175 (448)
..++||.++++.-++.+.+.+... ++.+..++++.+..+.. ..+. ....|+|+|. . ....+++..+
T Consensus 258 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~-~~~Gidip~~ 327 (400)
T 1s2m_A 258 INQAIIFCNSTNRVELLAKKITDL----GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD-----L-LTRGIDIQAV 327 (400)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS-----C-SSSSCCCTTE
T ss_pred CCcEEEEEecHHHHHHHHHHHHhc----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-----c-cccCCCccCC
Confidence 468999999999999999988875 56778888887654433 2333 3578999993 2 2334677778
Q ss_pred cEEEEe
Q 013176 176 TYLVLD 181 (448)
Q Consensus 176 ~~iIvD 181 (448)
+++|.-
T Consensus 328 ~~Vi~~ 333 (400)
T 1s2m_A 328 NVVINF 333 (400)
T ss_dssp EEEEES
T ss_pred CEEEEe
Confidence 877753
No 318
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=69.87 E-value=3.2 Score=34.98 Aligned_cols=20 Identities=20% Similarity=0.069 Sum_probs=15.6
Q ss_pred hhcCCcEEEEcCCCChHHHH
Q 013176 61 ALKGRDLIGIAETGSGKTLS 80 (448)
Q Consensus 61 ~~~~~~~lv~~~tGsGKT~~ 80 (448)
+..++-+.++||+|+|||..
T Consensus 20 i~~G~~~~lvGpsGsGKSTL 39 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTL 39 (218)
T ss_dssp --CCCCEEEECSTTSSHHHH
T ss_pred cCCCCEEEEECCCCCCHHHH
Confidence 34567789999999999974
No 319
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=69.85 E-value=18 Score=33.90 Aligned_cols=69 Identities=14% Similarity=0.215 Sum_probs=51.0
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHH---HHh-cCCcEEEEccHHHHHHHHccccCCCCccE
Q 013176 102 IVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIR---DLR-RGVEIVIATPGRLIDMLEAQHTNLRRVTY 177 (448)
Q Consensus 102 ~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~~~ 177 (448)
.+||.|+++.-++.+.+.+.+. ++.+..++|+.+..+... .+. ...+|+|+|. . ....+++.++++
T Consensus 302 ~~lVF~~t~~~a~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----v-~~rGlDi~~v~~ 371 (434)
T 2db3_A 302 GTIVFVETKRGADFLASFLSEK----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS-----V-ASRGLDIKNIKH 371 (434)
T ss_dssp TEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG-----G-GTSSCCCTTCCE
T ss_pred CEEEEEeCcHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch-----h-hhCCCCcccCCE
Confidence 3999999999999998888874 677888998876654432 333 3578999993 3 334567888888
Q ss_pred EEE
Q 013176 178 LVL 180 (448)
Q Consensus 178 iIv 180 (448)
||.
T Consensus 372 VI~ 374 (434)
T 2db3_A 372 VIN 374 (434)
T ss_dssp EEE
T ss_pred EEE
Confidence 775
No 320
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=69.77 E-value=6.8 Score=36.94 Aligned_cols=67 Identities=13% Similarity=0.131 Sum_probs=46.0
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHHHHh-cCCcEEEEccHHHHHHHHccccCCCCccEE
Q 013176 100 GPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLR-RGVEIVIATPGRLIDMLEAQHTNLRRVTYL 178 (448)
Q Consensus 100 ~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~~~i 178 (448)
+.+++|+||++.-++.+++.+++. ++++..++++... .....+. ...+|+|+| +.+.. .+++. ...|
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~r~-~~~~~f~~g~~~vLVaT-----~v~e~-GiDip-~~~V 238 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRKTFE-SEYPKCKSEKWDFVITT-----DISEM-GANFK-ADRV 238 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTTHH-HHTTHHHHSCCSEEEEC-----GGGGT-SCCCC-CSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCccHH-HHHHhhcCCCCeEEEEC-----chHHc-CcccC-CcEE
Confidence 457999999999999999998885 6778888876322 2233333 468999999 44443 34554 4444
No 321
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=69.58 E-value=3.6 Score=38.36 Aligned_cols=25 Identities=32% Similarity=0.490 Sum_probs=18.2
Q ss_pred HHHHhhcCCc--EEEEcCCCChHHHHH
Q 013176 57 GWPMALKGRD--LIGIAETGSGKTLSY 81 (448)
Q Consensus 57 ~i~~~~~~~~--~lv~~~tGsGKT~~~ 81 (448)
.+..+++|.+ ++..|.||||||.+.
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 4455667765 455599999999874
No 322
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=69.52 E-value=2.8 Score=33.45 Aligned_cols=17 Identities=12% Similarity=-0.240 Sum_probs=13.8
Q ss_pred cEEEEcCCCChHHHHHH
Q 013176 66 DLIGIAETGSGKTLSYL 82 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~~~ 82 (448)
.+++.|+.|||||..+-
T Consensus 3 ~i~l~G~~GsGKsT~~~ 19 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAA 19 (173)
T ss_dssp EEEEECSSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36788999999997643
No 323
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=69.47 E-value=5 Score=35.85 Aligned_cols=17 Identities=29% Similarity=0.348 Sum_probs=13.6
Q ss_pred cEEEEcCCCChHHHHHH
Q 013176 66 DLIGIAETGSGKTLSYL 82 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~~~ 82 (448)
-+++.+++|+|||....
T Consensus 106 vi~ivG~~GsGKTTl~~ 122 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCG 122 (306)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEEcCCCChHHHHHH
Confidence 46788999999997644
No 324
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=69.20 E-value=2.8 Score=40.01 Aligned_cols=19 Identities=37% Similarity=0.517 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 013176 64 GRDLIGIAETGSGKTLSYL 82 (448)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~ 82 (448)
++++++.+|+|+|||..+.
T Consensus 63 ~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp TCEEEEECCTTSSHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHH
Confidence 3589999999999997643
No 325
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=69.10 E-value=3.3 Score=38.54 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=16.5
Q ss_pred HHhhcCCc--EEEEcCCCChHHHHH
Q 013176 59 PMALKGRD--LIGIAETGSGKTLSY 81 (448)
Q Consensus 59 ~~~~~~~~--~lv~~~tGsGKT~~~ 81 (448)
..+++|.+ ++..|.||||||.+.
T Consensus 148 ~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 148 QTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHHhcCCceeEEeecCCCCCCCeEe
Confidence 34556654 455699999999874
No 326
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=69.09 E-value=2.3 Score=34.61 Aligned_cols=19 Identities=26% Similarity=0.392 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 013176 64 GRDLIGIAETGSGKTLSYL 82 (448)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~ 82 (448)
+..+++.|++|||||..+-
T Consensus 4 g~~I~l~G~~GsGKST~~~ 22 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQAS 22 (186)
T ss_dssp EEEEEEECCTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3457888999999997643
No 327
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=69.02 E-value=3.2 Score=37.77 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=16.2
Q ss_pred HHhhcCCc--EEEEcCCCChHHHHH
Q 013176 59 PMALKGRD--LIGIAETGSGKTLSY 81 (448)
Q Consensus 59 ~~~~~~~~--~lv~~~tGsGKT~~~ 81 (448)
..+++|.+ ++..|.||||||.+.
T Consensus 88 ~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 88 DKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hHhhCCCceEEEEecCCCCCCCeEE
Confidence 33456654 455699999999873
No 328
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=68.97 E-value=3.1 Score=33.11 Aligned_cols=19 Identities=32% Similarity=0.246 Sum_probs=15.7
Q ss_pred CcEEEEcCCCChHHHHHHH
Q 013176 65 RDLIGIAETGSGKTLSYLL 83 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~l 83 (448)
+++++.++.|||||.++-.
T Consensus 8 ~~i~l~G~~GsGKSTva~~ 26 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQE 26 (168)
T ss_dssp CEEEEESCTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 5789999999999986543
No 329
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=68.96 E-value=7.8 Score=37.81 Aligned_cols=42 Identities=17% Similarity=0.199 Sum_probs=25.6
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCc
Q 013176 64 GRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPT 109 (448)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~ 109 (448)
..+++|.+.||||||.+.-..++..+.... +...+++++=|.
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~~s----P~ev~lilIDpK 255 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFKST----PSEARLIMIDPK 255 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTTCC----TTTEEEEEECSS
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHhCC----CcceEEEEeCCC
Confidence 468999999999999764433333333221 123456666664
No 330
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=68.94 E-value=3.7 Score=37.57 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=16.4
Q ss_pred HHhhcCCc--EEEEcCCCChHHHHH
Q 013176 59 PMALKGRD--LIGIAETGSGKTLSY 81 (448)
Q Consensus 59 ~~~~~~~~--~lv~~~tGsGKT~~~ 81 (448)
..+++|.+ ++..|.||||||.+.
T Consensus 99 ~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 99 RSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHhCCCceEEEEeCCCCCCceeee
Confidence 44556654 455699999999873
No 331
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=68.92 E-value=3.6 Score=37.16 Aligned_cols=25 Identities=24% Similarity=0.411 Sum_probs=18.2
Q ss_pred HHHHhhcCCc--EEEEcCCCChHHHHH
Q 013176 57 GWPMALKGRD--LIGIAETGSGKTLSY 81 (448)
Q Consensus 57 ~i~~~~~~~~--~lv~~~tGsGKT~~~ 81 (448)
.+..+++|.+ ++..+.||||||.+.
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 72 LVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 4555667765 455699999999873
No 332
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=68.77 E-value=3.7 Score=37.43 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=16.4
Q ss_pred HHhhcCCc--EEEEcCCCChHHHHH
Q 013176 59 PMALKGRD--LIGIAETGSGKTLSY 81 (448)
Q Consensus 59 ~~~~~~~~--~lv~~~tGsGKT~~~ 81 (448)
..+++|.+ ++..+.||||||.+.
T Consensus 77 ~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 77 EAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHhhcCeeEEEecccCCCceEee
Confidence 34556654 455699999999873
No 333
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=68.65 E-value=3.7 Score=37.71 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=16.0
Q ss_pred HHhhcCCc--EEEEcCCCChHHHH
Q 013176 59 PMALKGRD--LIGIAETGSGKTLS 80 (448)
Q Consensus 59 ~~~~~~~~--~lv~~~tGsGKT~~ 80 (448)
..+++|.+ ++..|.||||||.+
T Consensus 78 ~~~l~G~n~tifAYGqTGSGKTyT 101 (365)
T 2y65_A 78 TDVLAGYNGTIFAYGQTSSGKTHT 101 (365)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHhCCCceEEEeecCCCCCCceE
Confidence 34556654 45569999999987
No 334
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=68.64 E-value=3.1 Score=33.49 Aligned_cols=16 Identities=31% Similarity=0.326 Sum_probs=13.2
Q ss_pred cEEEEcCCCChHHHHH
Q 013176 66 DLIGIAETGSGKTLSY 81 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~~ 81 (448)
-+++.|++|||||..+
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 3678899999999753
No 335
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=68.64 E-value=3.7 Score=37.44 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=16.3
Q ss_pred HHhhcCCc--EEEEcCCCChHHHHH
Q 013176 59 PMALKGRD--LIGIAETGSGKTLSY 81 (448)
Q Consensus 59 ~~~~~~~~--~lv~~~tGsGKT~~~ 81 (448)
..+++|.+ ++..|.||||||.+.
T Consensus 83 ~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 83 DAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhCCCceeEEeecCCCCCCCEEe
Confidence 34556654 455699999999873
No 336
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=68.63 E-value=2.7 Score=37.48 Aligned_cols=17 Identities=29% Similarity=0.278 Sum_probs=14.6
Q ss_pred cEEEEcCCCChHHHHHH
Q 013176 66 DLIGIAETGSGKTLSYL 82 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~~~ 82 (448)
.+++.||+|+|||..+-
T Consensus 49 ~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAK 65 (311)
T ss_dssp EEEEESCSSSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHH
Confidence 68999999999997643
No 337
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=68.38 E-value=3.5 Score=37.70 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=16.4
Q ss_pred HHHhhcCCc--EEEEcCCCChHHHH
Q 013176 58 WPMALKGRD--LIGIAETGSGKTLS 80 (448)
Q Consensus 58 i~~~~~~~~--~lv~~~tGsGKT~~ 80 (448)
+..+++|.+ ++..+.||||||.+
T Consensus 96 v~~~l~G~N~tIfAYGqTGSGKTyT 120 (358)
T 2nr8_A 96 VSQALDGYNGTIMCYGQTGAGKTYT 120 (358)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHhCCCceEEEEECCCCCCCceE
Confidence 344556655 45559999999987
No 338
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=68.35 E-value=3.6 Score=37.61 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=17.7
Q ss_pred HHHHhhcCCc--EEEEcCCCChHHHHH
Q 013176 57 GWPMALKGRD--LIGIAETGSGKTLSY 81 (448)
Q Consensus 57 ~i~~~~~~~~--~lv~~~tGsGKT~~~ 81 (448)
++..+++|.+ ++..|.||||||.+.
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 3445567765 455599999999873
No 339
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=68.26 E-value=3.6 Score=37.87 Aligned_cols=22 Identities=32% Similarity=0.596 Sum_probs=16.0
Q ss_pred HHhhcCCc--EEEEcCCCChHHHH
Q 013176 59 PMALKGRD--LIGIAETGSGKTLS 80 (448)
Q Consensus 59 ~~~~~~~~--~lv~~~tGsGKT~~ 80 (448)
..+++|.+ ++..|.||||||.+
T Consensus 95 ~~~l~G~n~tifAYGqTGSGKTyT 118 (372)
T 3b6u_A 95 DSVLQGFNGTIFAYGQTGTGKTYT 118 (372)
T ss_dssp HHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHhCCCeeeEEeecCCCCCCCEe
Confidence 34556654 45569999999987
No 340
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=68.12 E-value=3.8 Score=37.42 Aligned_cols=21 Identities=29% Similarity=0.569 Sum_probs=15.7
Q ss_pred HhhcCCc--EEEEcCCCChHHHH
Q 013176 60 MALKGRD--LIGIAETGSGKTLS 80 (448)
Q Consensus 60 ~~~~~~~--~lv~~~tGsGKT~~ 80 (448)
.+++|.+ ++..|.||||||.+
T Consensus 75 ~~l~G~n~tifAYGqTGSGKTyT 97 (355)
T 1goj_A 75 DILNGYNGTVFAYGQTGAGKSYT 97 (355)
T ss_dssp HHTTTCCEEEEEECSTTSSHHHH
T ss_pred HHhCCCcceEEEECCCCCCcceE
Confidence 4556654 55569999999987
No 341
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=68.10 E-value=19 Score=36.77 Aligned_cols=55 Identities=11% Similarity=0.010 Sum_probs=42.7
Q ss_pred hcCCcEEEEecchhHHHHHHHHHHh----CCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEec
Q 013176 270 MDGSRILIFTETKKGCDQVTRQLRM----DGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD 330 (448)
Q Consensus 270 ~~~~k~lVf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~ 330 (448)
..+..++|.++|+.-|...++.+.. .++.+.++.|+++...+.... .++|+|+|+
T Consensus 113 l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTp 171 (853)
T 2fsf_A 113 LTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTN 171 (853)
T ss_dssp TTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEH
T ss_pred HcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECC
Confidence 4567899999999988877766643 489999999999976554432 378999994
No 342
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=67.98 E-value=3.6 Score=33.56 Aligned_cols=15 Identities=20% Similarity=0.366 Sum_probs=12.9
Q ss_pred cEEEEcCCCChHHHH
Q 013176 66 DLIGIAETGSGKTLS 80 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~ 80 (448)
-+.+.||+|+|||..
T Consensus 3 ii~l~GpsGaGKsTl 17 (186)
T 3a00_A 3 PIVISGPSGTGKSTL 17 (186)
T ss_dssp CEEEESSSSSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467899999999975
No 343
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=67.88 E-value=3.9 Score=37.60 Aligned_cols=23 Identities=26% Similarity=0.569 Sum_probs=16.5
Q ss_pred HHHhhcCCc--EEEEcCCCChHHHH
Q 013176 58 WPMALKGRD--LIGIAETGSGKTLS 80 (448)
Q Consensus 58 i~~~~~~~~--~lv~~~tGsGKT~~ 80 (448)
+..+++|.+ ++..|.||||||.+
T Consensus 82 v~~~l~G~N~tifAYGqTGSGKTyT 106 (366)
T 2zfi_A 82 LQHAFEGYNVCIFAYGQTGAGKSYT 106 (366)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHhcCCeeEEEEeCCCCCCCceE
Confidence 344556754 45569999999986
No 344
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=67.86 E-value=3 Score=37.84 Aligned_cols=17 Identities=29% Similarity=0.276 Sum_probs=13.9
Q ss_pred cEEEEcCCCChHHHHHH
Q 013176 66 DLIGIAETGSGKTLSYL 82 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~~~ 82 (448)
-++|.||||||||..+.
T Consensus 9 lI~I~GptgSGKTtla~ 25 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSI 25 (340)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred eEEEECCCcCcHHHHHH
Confidence 46788999999997644
No 345
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=67.76 E-value=6.2 Score=31.67 Aligned_cols=25 Identities=16% Similarity=-0.056 Sum_probs=16.6
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhc
Q 013176 66 DLIGIAETGSGKTLSYLLPAFVHVSA 91 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~~~l~~l~~~~~ 91 (448)
-+.+.++.|||||.. +..++..+..
T Consensus 6 ~i~i~G~sGsGKTTl-~~~L~~~l~~ 30 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTL-MEKWVAAAVR 30 (169)
T ss_dssp EEEEECCTTSSHHHH-HHHHHHHHHH
T ss_pred EEEEECCCCCCHHHH-HHHHHHhhHh
Confidence 367889999999964 3344444433
No 346
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=67.64 E-value=3.6 Score=37.68 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=16.6
Q ss_pred HHHhhcCCc--EEEEcCCCChHHHH
Q 013176 58 WPMALKGRD--LIGIAETGSGKTLS 80 (448)
Q Consensus 58 i~~~~~~~~--~lv~~~tGsGKT~~ 80 (448)
+..+++|.+ ++..|.||||||.+
T Consensus 81 v~~~l~G~n~tifAYGqTGSGKTyT 105 (359)
T 1x88_A 81 LDEVIMGYNCTIFAYGQTGTGKTFT 105 (359)
T ss_dssp HHHHHTTCEEEEEEEECTTSSHHHH
T ss_pred HHHHhCCCceEEEEeCCCCCCCceE
Confidence 344556754 45569999999987
No 347
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=67.60 E-value=3.5 Score=33.49 Aligned_cols=18 Identities=22% Similarity=0.255 Sum_probs=14.6
Q ss_pred CCcEEEEcCCCChHHHHH
Q 013176 64 GRDLIGIAETGSGKTLSY 81 (448)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~ 81 (448)
+..+++.|++|||||...
T Consensus 3 ~~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345788999999999753
No 348
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=67.56 E-value=3.7 Score=33.94 Aligned_cols=19 Identities=32% Similarity=0.412 Sum_probs=15.2
Q ss_pred cCCcEEEEcCCCChHHHHH
Q 013176 63 KGRDLIGIAETGSGKTLSY 81 (448)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~ 81 (448)
.+..+++.|+.|+|||..+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3456888999999999753
No 349
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=67.54 E-value=2.8 Score=30.35 Aligned_cols=38 Identities=16% Similarity=0.204 Sum_probs=32.3
Q ss_pred hcCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCC
Q 013176 270 MDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKN 307 (448)
Q Consensus 270 ~~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 307 (448)
..++++++||.+-..+...+..|++.|+++..+.|++.
T Consensus 54 ~~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (103)
T 3eme_A 54 NKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHH
Confidence 35678999999988899999999999998888888643
No 350
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=67.49 E-value=1.6 Score=38.12 Aligned_cols=19 Identities=26% Similarity=0.398 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 013176 64 GRDLIGIAETGSGKTLSYL 82 (448)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~ 82 (448)
.+.+++.||+|+|||..+-
T Consensus 44 ~~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 3568999999999997643
No 351
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=67.39 E-value=3.8 Score=37.35 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=16.4
Q ss_pred HHhhcCCc--EEEEcCCCChHHHHH
Q 013176 59 PMALKGRD--LIGIAETGSGKTLSY 81 (448)
Q Consensus 59 ~~~~~~~~--~lv~~~tGsGKT~~~ 81 (448)
..+++|.+ ++..|.||||||.+.
T Consensus 71 ~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 71 DSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHcCCccceeeecCCCCCCCeEE
Confidence 34556654 455699999999873
No 352
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=66.88 E-value=19 Score=33.44 Aligned_cols=29 Identities=14% Similarity=0.072 Sum_probs=23.1
Q ss_pred CCCCCcccccccCCCCHHHHHHHHHCCCC
Q 013176 20 HDVPRPIRIFQEANFPDYCLEVIAKLGFV 48 (448)
Q Consensus 20 ~~~~~p~~~~~~~~l~~~l~~~~~~~~~~ 48 (448)
...+.|+..++..++++..++.|++.||.
T Consensus 77 ~~~~~~~~~l~~~gi~~~~~~~L~~ag~~ 105 (400)
T 3lda_A 77 LGSFVPIEKLQVNGITMADVKKLRESGLH 105 (400)
T ss_dssp -CCSCBGGGGCCTTCCHHHHHHHHHTTCC
T ss_pred ccCccCHHHHHhCCCCHHHHHHHHHcCCC
Confidence 34456778888889999999999988875
No 353
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=66.73 E-value=4.3 Score=33.17 Aligned_cols=21 Identities=24% Similarity=0.208 Sum_probs=16.4
Q ss_pred hcCCcEEEEcCCCChHHHHHH
Q 013176 62 LKGRDLIGIAETGSGKTLSYL 82 (448)
Q Consensus 62 ~~~~~~lv~~~tGsGKT~~~~ 82 (448)
..+..+++.|++|||||..+-
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~ 27 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCE 27 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 345578889999999998643
No 354
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=66.73 E-value=4.7 Score=44.09 Aligned_cols=33 Identities=27% Similarity=0.356 Sum_probs=23.7
Q ss_pred CCCccEEEEecccccccCCCHHHHHHHHHHcCC
Q 013176 172 LRRVTYLVLDEADRMLDMGFEPQIRKIVTQIRP 204 (448)
Q Consensus 172 ~~~~~~iIvDE~h~~~~~~~~~~~~~~~~~~~~ 204 (448)
+++.+++|+||+=.-+|......+.+.+..+.+
T Consensus 570 ~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~ 602 (1321)
T 4f4c_A 570 VRNPKILLLDEATSALDAESEGIVQQALDKAAK 602 (1321)
T ss_dssp TTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHT
T ss_pred ccCCCEEEEecccccCCHHHHHHHHHHHHHHhC
Confidence 456789999999887776666666666655433
No 355
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=66.69 E-value=3.4 Score=37.44 Aligned_cols=17 Identities=24% Similarity=0.214 Sum_probs=14.7
Q ss_pred CcEEEEcCCCChHHHHH
Q 013176 65 RDLIGIAETGSGKTLSY 81 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~ 81 (448)
..+++.||+|+|||..+
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 57999999999999753
No 356
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=66.68 E-value=4.1 Score=37.62 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=16.6
Q ss_pred HHhhcCCc--EEEEcCCCChHHHHH
Q 013176 59 PMALKGRD--LIGIAETGSGKTLSY 81 (448)
Q Consensus 59 ~~~~~~~~--~lv~~~tGsGKT~~~ 81 (448)
..+++|.+ ++..+.||||||.+.
T Consensus 128 ~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 128 QTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHHhcCCceEEEEecCCCCCCCeEe
Confidence 34556654 555699999999874
No 357
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=66.68 E-value=5.7 Score=35.76 Aligned_cols=17 Identities=29% Similarity=0.366 Sum_probs=13.6
Q ss_pred cEEEEcCCCChHHHHHH
Q 013176 66 DLIGIAETGSGKTLSYL 82 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~~~ 82 (448)
-+++.++.|+|||....
T Consensus 107 vI~ivG~~G~GKTT~~~ 123 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSLA 123 (320)
T ss_dssp EEEEESSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46777999999997644
No 358
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=66.57 E-value=3.9 Score=34.01 Aligned_cols=21 Identities=24% Similarity=0.227 Sum_probs=15.9
Q ss_pred HhhcCCcEEEEcCCCChHHHH
Q 013176 60 MALKGRDLIGIAETGSGKTLS 80 (448)
Q Consensus 60 ~~~~~~~~lv~~~tGsGKT~~ 80 (448)
.+..++-+.+.+|.|+|||..
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTL 36 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTV 36 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHH
Confidence 566777888999999999974
No 359
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=66.30 E-value=3.7 Score=37.97 Aligned_cols=32 Identities=25% Similarity=0.413 Sum_probs=21.3
Q ss_pred CcHHHHhHHHH--------hhcCCc--EEEEcCCCChHHHHH
Q 013176 50 PTPIQAQGWPM--------ALKGRD--LIGIAETGSGKTLSY 81 (448)
Q Consensus 50 ~~~~Q~~~i~~--------~~~~~~--~lv~~~tGsGKT~~~ 81 (448)
+..-|.+++.. +++|.+ ++..|.||||||.+.
T Consensus 75 ~~~tQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 75 ERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp TTCCHHHHHHHHTGGGHHHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred CCCCHhHHHHHHHHHHHHHhhcCceeeEeeecCCCCCCCeEe
Confidence 34456666643 455654 455699999999873
No 360
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=66.22 E-value=4.2 Score=35.16 Aligned_cols=20 Identities=35% Similarity=0.401 Sum_probs=17.0
Q ss_pred cCCcEEEEcCCCChHHHHHH
Q 013176 63 KGRDLIGIAETGSGKTLSYL 82 (448)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~~ 82 (448)
.+..+++.+++|+|||...-
T Consensus 47 ~g~~i~l~G~~GsGKSTl~~ 66 (250)
T 3nwj_A 47 NGRSMYLVGMMGSGKTTVGK 66 (250)
T ss_dssp TTCCEEEECSTTSCHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 37899999999999998643
No 361
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=66.10 E-value=3.3 Score=33.23 Aligned_cols=18 Identities=22% Similarity=0.231 Sum_probs=14.5
Q ss_pred CCcEEEEcCCCChHHHHH
Q 013176 64 GRDLIGIAETGSGKTLSY 81 (448)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~ 81 (448)
+..+++.++.|||||..+
T Consensus 8 g~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp SEEEEEECSTTSCHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 345788899999999753
No 362
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=65.98 E-value=3.1 Score=30.22 Aligned_cols=38 Identities=16% Similarity=0.194 Sum_probs=31.8
Q ss_pred hhcCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCC
Q 013176 269 VMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDK 306 (448)
Q Consensus 269 ~~~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 306 (448)
...+++++++|.+-..+...+..|++.|+++..+.|++
T Consensus 53 l~~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 53 FNKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp CCTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred hcCCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 34567899999998888899999999999888777764
No 363
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=65.89 E-value=3.9 Score=37.64 Aligned_cols=22 Identities=32% Similarity=0.557 Sum_probs=15.9
Q ss_pred HHhhcCCc--EEEEcCCCChHHHH
Q 013176 59 PMALKGRD--LIGIAETGSGKTLS 80 (448)
Q Consensus 59 ~~~~~~~~--~lv~~~tGsGKT~~ 80 (448)
..+++|.+ ++..+.||||||.+
T Consensus 94 ~~~l~G~n~tifAYGqTGSGKTyT 117 (373)
T 2wbe_C 94 EEVLNGYNCTVFAYGQTGTGKTHT 117 (373)
T ss_dssp HHHHHTCCEEEEEECSTTSSHHHH
T ss_pred HHHhCCceEEEEeecCCCCCccee
Confidence 34556654 45569999999987
No 364
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=65.71 E-value=4.1 Score=32.69 Aligned_cols=17 Identities=29% Similarity=0.299 Sum_probs=14.4
Q ss_pred cEEEEcCCCChHHHHHH
Q 013176 66 DLIGIAETGSGKTLSYL 82 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~~~ 82 (448)
.+++.+++|||||..+-
T Consensus 6 ~i~i~G~~GsGKsTla~ 22 (175)
T 1via_A 6 NIVFIGFMGSGKSTLAR 22 (175)
T ss_dssp CEEEECCTTSCHHHHHH
T ss_pred EEEEEcCCCCCHHHHHH
Confidence 58899999999998644
No 365
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=65.52 E-value=4.1 Score=38.04 Aligned_cols=25 Identities=36% Similarity=0.492 Sum_probs=18.0
Q ss_pred HHHHhhcCCc--EEEEcCCCChHHHHH
Q 013176 57 GWPMALKGRD--LIGIAETGSGKTLSY 81 (448)
Q Consensus 57 ~i~~~~~~~~--~lv~~~tGsGKT~~~ 81 (448)
.+..+++|.+ ++..|.||||||.+.
T Consensus 130 lv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 130 LIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 4455667765 455599999999873
No 366
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=65.44 E-value=45 Score=27.78 Aligned_cols=75 Identities=15% Similarity=0.112 Sum_probs=49.1
Q ss_pred HHHHHHHCCCCCCcHHHHhHHHHhhcC--Cc---EEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHH
Q 013176 38 CLEVIAKLGFVEPTPIQAQGWPMALKG--RD---LIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTREL 112 (448)
Q Consensus 38 l~~~~~~~~~~~~~~~Q~~~i~~~~~~--~~---~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L 112 (448)
+.+.-...++..+.|.+.+.+..+... .. .++-..||+|-+..++. ..+. .+.+++-+=.....
T Consensus 25 ~~~~a~~~~~p~i~~~~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la---~~~~--------~~~~v~~vD~~~~~ 93 (221)
T 3dr5_A 25 AREDAAEFGLPAPDEMTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYIL---NGLA--------DNTTLTCIDPESEH 93 (221)
T ss_dssp HHHHHHHTTCCCCCHHHHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHH---HHSC--------TTSEEEEECSCHHH
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHH---HhCC--------CCCEEEEEECCHHH
Confidence 444555678888899998888776532 22 56688899997754332 2211 14567788777777
Q ss_pred HHHHHHHHHHh
Q 013176 113 AVQIQEEALKF 123 (448)
Q Consensus 113 ~~q~~~~~~~~ 123 (448)
+....+.++..
T Consensus 94 ~~~a~~~~~~~ 104 (221)
T 3dr5_A 94 QRQAKALFREA 104 (221)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHc
Confidence 77666666664
No 367
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=65.44 E-value=17 Score=37.25 Aligned_cols=75 Identities=19% Similarity=0.260 Sum_probs=52.4
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhh-------cCCCceEEEEEcCCCchHhHHHHh---------cCCcEEEEccHHHHH
Q 013176 100 GPIVLVLAPTRELAVQIQEEALKFG-------SRAGIRSTCIYGGAPKGPQIRDLR---------RGVEIVIATPGRLID 163 (448)
Q Consensus 100 ~~~vlil~P~~~L~~q~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~iiv~T~~~l~~ 163 (448)
...+||.+|++.-++++++.+.+.. ...++.+..++++.+..++...+. ....|+|+| +
T Consensus 303 ~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT-----~ 377 (773)
T 2xau_A 303 AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVIST-----N 377 (773)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEEC-----T
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeC-----c
Confidence 5689999999999999998887522 234678899999887655443332 235799999 4
Q ss_pred HHHccccCCCCccEEEE
Q 013176 164 MLEAQHTNLRRVTYLVL 180 (448)
Q Consensus 164 ~~~~~~~~~~~~~~iIv 180 (448)
.+.. .+++..+++||-
T Consensus 378 iae~-GidIp~v~~VId 393 (773)
T 2xau_A 378 IAET-SLTIDGIVYVVD 393 (773)
T ss_dssp HHHH-TCCCTTEEEEEE
T ss_pred HHHh-CcCcCCeEEEEe
Confidence 4443 456777776653
No 368
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=65.43 E-value=26 Score=25.53 Aligned_cols=56 Identities=16% Similarity=0.048 Sum_probs=40.1
Q ss_pred HHHHHHhhhcCCcEEEEe------cchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHH
Q 013176 262 LIKLLKEVMDGSRILIFT------ETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAE 317 (448)
Q Consensus 262 l~~~l~~~~~~~k~lVf~------~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~ 317 (448)
+...+++.....+++||. ++-..|....+.|.+.+++...++-..+++.+..+.+.
T Consensus 5 ~~~~v~~~i~~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~~ 66 (111)
T 3zyw_A 5 LNLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKAY 66 (111)
T ss_dssp HHHHHHHHHTSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHHH
Confidence 345566666778999998 46678999999999998887777655555555554443
No 369
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=65.41 E-value=11 Score=37.87 Aligned_cols=68 Identities=13% Similarity=0.176 Sum_probs=46.9
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHHHHh-cCCcEEEEccHHHHHHHHccccCCCCccEE
Q 013176 100 GPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLR-RGVEIVIATPGRLIDMLEAQHTNLRRVTYL 178 (448)
Q Consensus 100 ~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~~~i 178 (448)
+.++||+||++.-++.+++.+++. ++++..+++.. .......+. ...+|+|+| +.+.. .+++. +++|
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~----g~~v~~lHg~e-R~~v~~~F~~g~~~VLVaT-----dv~e~-GIDip-v~~V 477 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA----GKRVIQLNRKS-YDTEYPKCKNGDWDFVITT-----DISEM-GANFG-ASRV 477 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECSSS-HHHHGGGGGTCCCSEEEEC-----GGGGT-TCCCC-CSEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCeEEEeChHH-HHHHHHHHHCCCceEEEEC-----chhhc-ceeeC-CcEE
Confidence 567999999999999888888764 67888888842 222233333 357899999 44433 45666 6666
Q ss_pred E
Q 013176 179 V 179 (448)
Q Consensus 179 I 179 (448)
|
T Consensus 478 I 478 (673)
T 2wv9_A 478 I 478 (673)
T ss_dssp E
T ss_pred E
Confidence 5
No 370
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=65.32 E-value=3.3 Score=38.47 Aligned_cols=16 Identities=25% Similarity=0.368 Sum_probs=13.2
Q ss_pred EEEEcCCCChHHHHHH
Q 013176 67 LIGIAETGSGKTLSYL 82 (448)
Q Consensus 67 ~lv~~~tGsGKT~~~~ 82 (448)
++|.||||+|||..+.
T Consensus 5 i~i~GptgsGKttla~ 20 (409)
T 3eph_A 5 IVIAGTTGVGKSQLSI 20 (409)
T ss_dssp EEEEECSSSSHHHHHH
T ss_pred EEEECcchhhHHHHHH
Confidence 6788999999997644
No 371
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=65.28 E-value=3.9 Score=37.58 Aligned_cols=25 Identities=32% Similarity=0.472 Sum_probs=17.8
Q ss_pred HHHHhhcCCc--EEEEcCCCChHHHHH
Q 013176 57 GWPMALKGRD--LIGIAETGSGKTLSY 81 (448)
Q Consensus 57 ~i~~~~~~~~--~lv~~~tGsGKT~~~ 81 (448)
.+..+++|.+ ++..|.||||||.+.
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 4455667765 455599999999873
No 372
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=65.26 E-value=3.4 Score=33.88 Aligned_cols=16 Identities=25% Similarity=0.441 Sum_probs=13.6
Q ss_pred CcEEEEcCCCChHHHH
Q 013176 65 RDLIGIAETGSGKTLS 80 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~ 80 (448)
+-++++||.|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 3478999999999975
No 373
>2pne_A 6.5 kDa glycine-rich antifreeze protein; chemical protein synthesis, native chemical ligation; 0.98A {Synthetic} PDB: 3boi_A 3bog_A* 3bog_C*
Probab=64.78 E-value=9.9 Score=23.96 Aligned_cols=10 Identities=30% Similarity=0.365 Sum_probs=3.7
Q ss_pred CCCCCCCCCC
Q 013176 428 FGIRSSMSGS 437 (448)
Q Consensus 428 ~g~~~~~~~~ 437 (448)
.|+.+|.+|+
T Consensus 47 vggaggasgg 56 (81)
T 2pne_A 47 VGGAGGASGG 56 (81)
T ss_dssp CCCCCCCCSS
T ss_pred ccccccccCC
Confidence 3333333333
No 374
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=64.76 E-value=3.7 Score=33.91 Aligned_cols=31 Identities=23% Similarity=0.199 Sum_probs=19.7
Q ss_pred CcHHHHhHHHHhhcCCcEEEEcCCCChHHHHH
Q 013176 50 PTPIQAQGWPMALKGRDLIGIAETGSGKTLSY 81 (448)
Q Consensus 50 ~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~ 81 (448)
.+..+...+ ....+.-+.+.|+.|+|||..+
T Consensus 12 ~~~~~~~~~-~~~~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 12 VEKVDRQRL-LDQKGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CCHHHHHHH-HTSCCEEEEEECSTTSSHHHHH
T ss_pred cCHHHHHHh-cCCCCeEEEEECCCCCCHHHHH
Confidence 444444332 2234556788899999999754
No 375
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=64.75 E-value=4.9 Score=33.61 Aligned_cols=71 Identities=15% Similarity=0.127 Sum_probs=47.0
Q ss_pred CCcEEEEecchhHHHHHHHHHHhC--------CCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEec-----cccC-CCC
Q 013176 272 GSRILIFTETKKGCDQVTRQLRMD--------GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD-----VAAR-GLD 337 (448)
Q Consensus 272 ~~k~lVf~~~~~~~~~l~~~L~~~--------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~~~-Gid 337 (448)
+.++||.+++++-+.++++.+++. +..+..++|+.+..+.. +.+ ....+|+|+|. .+.. .++
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~-~~~~~Iiv~Tp~~l~~~l~~~~~~ 147 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKAL---EKL-NVQPHIVIGTPGRINDFIREQALD 147 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTT---CCC-SSCCSEEEECHHHHHHHHHTTCCC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHH---HHc-CCCCCEEEeCHHHHHHHHHcCCCC
Confidence 458999999999999888877653 56777888876543221 111 23678999993 2222 345
Q ss_pred CCCccEEEE
Q 013176 338 VKDIKCVVN 346 (448)
Q Consensus 338 i~~~~~Vi~ 346 (448)
+..++++|.
T Consensus 148 ~~~~~~lVi 156 (219)
T 1q0u_A 148 VHTAHILVV 156 (219)
T ss_dssp GGGCCEEEE
T ss_pred cCcceEEEE
Confidence 666777664
No 376
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=64.70 E-value=4.5 Score=34.12 Aligned_cols=20 Identities=30% Similarity=0.320 Sum_probs=15.3
Q ss_pred hhcCCcEEEEcCCCChHHHH
Q 013176 61 ALKGRDLIGIAETGSGKTLS 80 (448)
Q Consensus 61 ~~~~~~~lv~~~tGsGKT~~ 80 (448)
+..++-+.+.||.|+|||..
T Consensus 13 ~~~G~ii~l~GpsGsGKSTL 32 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSL 32 (219)
T ss_dssp --CCCEEEEECCTTSCHHHH
T ss_pred CCCCcEEEEECCCCCCHHHH
Confidence 44566788999999999974
No 377
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=64.39 E-value=4.9 Score=37.97 Aligned_cols=23 Identities=26% Similarity=0.520 Sum_probs=16.5
Q ss_pred HHhhcCCc--EEEEcCCCChHHHHH
Q 013176 59 PMALKGRD--LIGIAETGSGKTLSY 81 (448)
Q Consensus 59 ~~~~~~~~--~lv~~~tGsGKT~~~ 81 (448)
..+++|.+ ++..|.||||||.+.
T Consensus 130 ~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 130 DHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHhhcCCceEEEEeCCCCCCCCEEe
Confidence 34456754 455699999999873
No 378
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=64.39 E-value=4.9 Score=36.99 Aligned_cols=23 Identities=39% Similarity=0.576 Sum_probs=16.5
Q ss_pred HHHhhcCCc--EEEEcCCCChHHHH
Q 013176 58 WPMALKGRD--LIGIAETGSGKTLS 80 (448)
Q Consensus 58 i~~~~~~~~--~lv~~~tGsGKT~~ 80 (448)
+..+++|.+ ++..+.||||||.+
T Consensus 108 v~~~l~G~N~tifAYGqTGSGKTyT 132 (376)
T 2rep_A 108 VQSALDGYPVCIFAYGQTGSGKTFT 132 (376)
T ss_dssp HHGGGGTCCEEEEEECSTTSSHHHH
T ss_pred HHHhcCCCceEEEEeCCCCCCCceE
Confidence 344556654 45559999999987
No 379
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=64.36 E-value=7.1 Score=28.30 Aligned_cols=40 Identities=15% Similarity=0.295 Sum_probs=32.5
Q ss_pred hhhcCCcEEEEecchhHHHHHHHHHHhCCCC-eEEEcCCCC
Q 013176 268 EVMDGSRILIFTETKKGCDQVTRQLRMDGWP-ALSIHGDKN 307 (448)
Q Consensus 268 ~~~~~~k~lVf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~ 307 (448)
....+.+++|||.+-..+...+..|+..|+. +..+.|++.
T Consensus 48 ~l~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 88 (106)
T 3hix_A 48 SLEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 88 (106)
T ss_dssp HSCTTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHH
T ss_pred cCCCCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHH
Confidence 3345678999999988899999999999985 788887654
No 380
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=64.14 E-value=7.9 Score=34.51 Aligned_cols=17 Identities=35% Similarity=0.589 Sum_probs=13.9
Q ss_pred CCcEEEEcCCCChHHHH
Q 013176 64 GRDLIGIAETGSGKTLS 80 (448)
Q Consensus 64 ~~~~lv~~~tGsGKT~~ 80 (448)
+.-+.+++|+|+|||..
T Consensus 102 g~vi~lvG~nGsGKTTl 118 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTT 118 (304)
T ss_dssp SSEEEEECSTTSSHHHH
T ss_pred CeEEEEECCCCCcHHHH
Confidence 34677889999999975
No 381
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=64.08 E-value=29 Score=35.54 Aligned_cols=55 Identities=13% Similarity=0.091 Sum_probs=43.1
Q ss_pred hcCCcEEEEecchhHHHHHHHHHHh----CCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEec
Q 013176 270 MDGSRILIFTETKKGCDQVTRQLRM----DGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD 330 (448)
Q Consensus 270 ~~~~k~lVf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~ 330 (448)
..+..++|.++|+.-|...++.+.. .++.+.++.|+++..+|.... .++|+++|+
T Consensus 122 L~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTp 180 (844)
T 1tf5_A 122 LTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTN 180 (844)
T ss_dssp TTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEH
T ss_pred HcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECc
Confidence 4567899999999998877776643 589999999999987655432 368999994
No 382
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=63.98 E-value=11 Score=37.63 Aligned_cols=66 Identities=18% Similarity=0.231 Sum_probs=48.3
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHHHHhcCCcEEEEccHHHHHHHHccccCCCCccEEE
Q 013176 100 GPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLRRVTYLV 179 (448)
Q Consensus 100 ~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iI 179 (448)
+.++||.++++.-++++++.+++. ++++..++++.+..+. ...+.+|+|+| +.+... +++. +++||
T Consensus 396 ~~~vLVFv~Tr~~ae~la~~L~~~----g~~v~~lHG~l~q~er---~~~~~~VLVAT-----dVaerG-IDId-V~~VI 461 (666)
T 3o8b_A 396 GGRHLIFCHSKKKCDELAAKLSGL----GINAVAYYRGLDVSVI---PTIGDVVVVAT-----DALMTG-YTGD-FDSVI 461 (666)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECTTSCGGGS---CSSSCEEEEEC-----TTHHHH-CCCC-BSEEE
T ss_pred CCcEEEEeCCHHHHHHHHHHHHhC----CCcEEEecCCCCHHHH---HhCCCcEEEEC-----ChHHcc-CCCC-CcEEE
Confidence 568999999999999998888863 6788899998866542 23456899999 444433 3454 77666
No 383
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=63.89 E-value=4.4 Score=33.34 Aligned_cols=19 Identities=26% Similarity=0.216 Sum_probs=15.2
Q ss_pred cCCcEEEEcCCCChHHHHH
Q 013176 63 KGRDLIGIAETGSGKTLSY 81 (448)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~ 81 (448)
.+..+++.|+.|||||...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~ 21 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQC 21 (204)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 3456788999999999753
No 384
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=63.85 E-value=6.2 Score=27.81 Aligned_cols=35 Identities=20% Similarity=0.316 Sum_probs=30.6
Q ss_pred CcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCC
Q 013176 273 SRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKN 307 (448)
Q Consensus 273 ~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 307 (448)
+++++||.+-..+...+..|++.|+++..+.|++.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 78999999988899999999999988878888764
No 385
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=63.79 E-value=4.1 Score=33.61 Aligned_cols=18 Identities=22% Similarity=0.278 Sum_probs=14.7
Q ss_pred CcEEEEcCCCChHHHHHH
Q 013176 65 RDLIGIAETGSGKTLSYL 82 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~ 82 (448)
.-+++.|+.|||||..+-
T Consensus 19 ~~I~l~G~~GsGKSTla~ 36 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGE 36 (202)
T ss_dssp SCEEEECSTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 368899999999997543
No 386
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=63.66 E-value=5.5 Score=31.13 Aligned_cols=15 Identities=33% Similarity=0.315 Sum_probs=12.8
Q ss_pred cEEEEcCCCChHHHH
Q 013176 66 DLIGIAETGSGKTLS 80 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~ 80 (448)
-.++.+|+|+|||..
T Consensus 25 ~~~I~G~NGsGKSti 39 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 467889999999975
No 387
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=63.48 E-value=4.3 Score=33.03 Aligned_cols=16 Identities=25% Similarity=0.254 Sum_probs=13.1
Q ss_pred cEEEEcCCCChHHHHH
Q 013176 66 DLIGIAETGSGKTLSY 81 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~~ 81 (448)
-+++.+|+|+|||..+
T Consensus 4 ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 3678899999999753
No 388
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=63.43 E-value=3.9 Score=40.47 Aligned_cols=15 Identities=20% Similarity=0.426 Sum_probs=13.9
Q ss_pred cEEEEcCCCChHHHH
Q 013176 66 DLIGIAETGSGKTLS 80 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~ 80 (448)
++++.||+|+|||..
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 899999999999974
No 389
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=63.09 E-value=7.6 Score=36.67 Aligned_cols=11 Identities=9% Similarity=-0.052 Sum_probs=6.2
Q ss_pred ccEEEEcCCCC
Q 013176 341 IKCVVNYDFPT 351 (448)
Q Consensus 341 ~~~Vi~~~~p~ 351 (448)
...|++-++|.
T Consensus 102 ~~~lfV~nL~~ 112 (437)
T 3pgw_S 102 FKTLFVARVNY 112 (437)
T ss_pred CCEEEEeCCCC
Confidence 34566666665
No 390
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=62.92 E-value=4.9 Score=32.60 Aligned_cols=15 Identities=40% Similarity=0.465 Sum_probs=12.9
Q ss_pred cEEEEcCCCChHHHH
Q 013176 66 DLIGIAETGSGKTLS 80 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~ 80 (448)
.+.+.+|.|+|||..
T Consensus 2 ~i~l~G~nGsGKTTL 16 (178)
T 1ye8_A 2 KIIITGEPGVGKTTL 16 (178)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467899999999974
No 391
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=62.65 E-value=30 Score=24.72 Aligned_cols=55 Identities=15% Similarity=0.091 Sum_probs=37.7
Q ss_pred HHHHhhhcCCcEEEEe------cchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHH
Q 013176 264 KLLKEVMDGSRILIFT------ETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEF 318 (448)
Q Consensus 264 ~~l~~~~~~~k~lVf~------~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f 318 (448)
+.+.+.....+++||. +.-..|..+...|.+.++....+.-+..+..+....+.+
T Consensus 8 ~~~~~~i~~~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~ 68 (105)
T 2yan_A 8 ERLKVLTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYS 68 (105)
T ss_dssp HHHHHHHTSSSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHH
T ss_pred HHHHHHhccCCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHH
Confidence 3444444556788887 456789999999998888877776665655555555444
No 392
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=62.63 E-value=2.4 Score=35.97 Aligned_cols=20 Identities=30% Similarity=0.273 Sum_probs=12.0
Q ss_pred hhcCCcEEEEcCCCChHHHH
Q 013176 61 ALKGRDLIGIAETGSGKTLS 80 (448)
Q Consensus 61 ~~~~~~~lv~~~tGsGKT~~ 80 (448)
+..+.-+.+.||+|+|||..
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl 43 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTV 43 (231)
T ss_dssp EECCCEEEEECSCC----CH
T ss_pred cCCCCEEEEECCCCCCHHHH
Confidence 34566688899999999975
No 393
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=62.60 E-value=5 Score=34.04 Aligned_cols=19 Identities=21% Similarity=0.274 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 013176 64 GRDLIGIAETGSGKTLSYL 82 (448)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~ 82 (448)
...+++.|++|||||..+-
T Consensus 16 ~~~I~l~G~~GsGKsT~a~ 34 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAP 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3568889999999998644
No 394
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=62.57 E-value=15 Score=35.57 Aligned_cols=72 Identities=14% Similarity=0.193 Sum_probs=49.3
Q ss_pred CCcEEEEecchhHHHHHHHHHHhC----CCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEec-cc----cCC-C-CCCC
Q 013176 272 GSRILIFTETKKGCDQVTRQLRMD----GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD-VA----ARG-L-DVKD 340 (448)
Q Consensus 272 ~~k~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-~~----~~G-i-di~~ 340 (448)
+.++||+++++.-+..+++.+++. ++.+..++|+.+...+...+. ...+|+|+|. .+ ..+ + ++..
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDIIILTPQILVNNLNNGAIPSLSV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSEEEECHHHHHHHHHTSSSCCGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCEEEECHHHHHHHHhcCccccccc
Confidence 668999999999988888877664 889999999987654432222 1468999992 22 222 2 4555
Q ss_pred ccEEEEc
Q 013176 341 IKCVVNY 347 (448)
Q Consensus 341 ~~~Vi~~ 347 (448)
+++||.=
T Consensus 128 ~~~vViD 134 (555)
T 3tbk_A 128 FTLMIFD 134 (555)
T ss_dssp CSEEEET
T ss_pred CCEEEEE
Confidence 6766643
No 395
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=62.45 E-value=5.3 Score=32.26 Aligned_cols=17 Identities=24% Similarity=0.192 Sum_probs=14.3
Q ss_pred cEEEEcCCCChHHHHHH
Q 013176 66 DLIGIAETGSGKTLSYL 82 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~~~ 82 (448)
.+++.+++|||||..+-
T Consensus 4 ~I~l~G~~GsGKsT~a~ 20 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGR 20 (184)
T ss_dssp SEEEECSTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 57899999999998643
No 396
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=62.45 E-value=7.7 Score=34.54 Aligned_cols=16 Identities=31% Similarity=0.412 Sum_probs=13.3
Q ss_pred CcEEEEcCCCChHHHH
Q 013176 65 RDLIGIAETGSGKTLS 80 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~ 80 (448)
.-+.+++|+|+|||..
T Consensus 101 ~vi~lvG~nGsGKTTl 116 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTS 116 (302)
T ss_dssp EEEEEECCTTSCHHHH
T ss_pred cEEEEEcCCCCCHHHH
Confidence 3577889999999975
No 397
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=62.42 E-value=8.6 Score=31.09 Aligned_cols=19 Identities=32% Similarity=0.153 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 013176 64 GRDLIGIAETGSGKTLSYL 82 (448)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~ 82 (448)
+..+++.+++|+|||..+-
T Consensus 13 ~~~i~l~G~~GsGKsT~~~ 31 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIAT 31 (186)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 3457888999999997543
No 398
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=62.41 E-value=15 Score=33.62 Aligned_cols=70 Identities=16% Similarity=0.150 Sum_probs=49.4
Q ss_pred cCCcEEEEecchhHHHHHHHHHHh----CCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEec-cc-----cCCCCCCC
Q 013176 271 DGSRILIFTETKKGCDQVTRQLRM----DGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD-VA-----ARGLDVKD 340 (448)
Q Consensus 271 ~~~k~lVf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-~~-----~~Gidi~~ 340 (448)
.+.++||.++++.-+.++++.+++ .+..+..++|+.+..+....+. ..+|+|+|. .+ ...+++..
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~ 162 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDK 162 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhh
Confidence 356899999999999988887765 3678889999988765544443 467999992 21 12344556
Q ss_pred ccEEE
Q 013176 341 IKCVV 345 (448)
Q Consensus 341 ~~~Vi 345 (448)
+++||
T Consensus 163 ~~~vI 167 (394)
T 1fuu_A 163 IKMFI 167 (394)
T ss_dssp CCEEE
T ss_pred CcEEE
Confidence 67666
No 399
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=62.24 E-value=5.3 Score=32.65 Aligned_cols=19 Identities=26% Similarity=0.232 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 013176 64 GRDLIGIAETGSGKTLSYL 82 (448)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~ 82 (448)
..-+++.|++|||||..+-
T Consensus 12 ~~~I~l~G~~GsGKsT~a~ 30 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCE 30 (199)
T ss_dssp SCEEEEEECTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4568889999999997643
No 400
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=62.14 E-value=5.7 Score=34.05 Aligned_cols=19 Identities=32% Similarity=0.343 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 013176 64 GRDLIGIAETGSGKTLSYL 82 (448)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~ 82 (448)
...+++.|+.|||||..+-
T Consensus 29 ~~~I~l~G~~GsGKsT~a~ 47 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSL 47 (243)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3468889999999997643
No 401
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=62.14 E-value=4.4 Score=32.98 Aligned_cols=18 Identities=22% Similarity=0.126 Sum_probs=14.3
Q ss_pred CcEEEEcCCCChHHHHHH
Q 013176 65 RDLIGIAETGSGKTLSYL 82 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~ 82 (448)
.-+++.|++|||||..+-
T Consensus 6 ~~I~l~G~~GsGKST~~~ 23 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQ 23 (193)
T ss_dssp EEEEEEESTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 357888999999997543
No 402
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=62.10 E-value=5.3 Score=31.77 Aligned_cols=17 Identities=18% Similarity=0.176 Sum_probs=14.2
Q ss_pred cEEEEcCCCChHHHHHH
Q 013176 66 DLIGIAETGSGKTLSYL 82 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~~~ 82 (448)
.+++.+++|||||..+-
T Consensus 4 ~I~l~G~~GsGKsT~a~ 20 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGR 20 (173)
T ss_dssp CEEEESCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 57889999999998643
No 403
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=62.02 E-value=6.1 Score=37.77 Aligned_cols=19 Identities=32% Similarity=0.281 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 013176 64 GRDLIGIAETGSGKTLSYL 82 (448)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~ 82 (448)
..++++.||+|+|||..+-
T Consensus 201 ~~~~LL~G~pG~GKT~la~ 219 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAE 219 (468)
T ss_dssp SCEEEEESCTTTTTHHHHH
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 3589999999999997643
No 404
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=61.99 E-value=15 Score=34.74 Aligned_cols=68 Identities=16% Similarity=0.170 Sum_probs=46.7
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHHHHh-cCCcEEEEccHHHHHHHHccccCCCCccEE
Q 013176 100 GPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLR-RGVEIVIATPGRLIDMLEAQHTNLRRVTYL 178 (448)
Q Consensus 100 ~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~~~i 178 (448)
..++||.+|++.-++++++.+++. ++.+..+++.... .....+. ...+|+|+| +.+.. .+++.. ++|
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~----g~~~~~lh~~~~~-~~~~~f~~g~~~vLVaT-----~v~~~-GiDip~-~~V 255 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTFD-TEYPKTKLTDWDFVVTT-----DISEM-GANFRA-GRV 255 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECTTTHH-HHGGGGGSSCCSEEEEC-----GGGGS-SCCCCC-SEE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHc----CCeEEECCHHHHH-HHHHhhccCCceEEEEC-----CHHHh-CcCCCC-CEE
Confidence 457999999999999988888764 5677778776542 2223333 357999999 44443 456666 665
Q ss_pred E
Q 013176 179 V 179 (448)
Q Consensus 179 I 179 (448)
|
T Consensus 256 I 256 (451)
T 2jlq_A 256 I 256 (451)
T ss_dssp E
T ss_pred E
Confidence 5
No 405
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=61.95 E-value=4.7 Score=33.65 Aligned_cols=17 Identities=18% Similarity=0.282 Sum_probs=14.0
Q ss_pred cEEEEcCCCChHHHHHH
Q 013176 66 DLIGIAETGSGKTLSYL 82 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~~~ 82 (448)
.+++.|+.|||||..+-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47889999999998644
No 406
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=61.87 E-value=22 Score=36.55 Aligned_cols=71 Identities=13% Similarity=0.210 Sum_probs=46.5
Q ss_pred CCcEEEEecchhHHHHHHHHHHhC----CCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEec-cc----cCC-C-CCCC
Q 013176 272 GSRILIFTETKKGCDQVTRQLRMD----GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD-VA----ARG-L-DVKD 340 (448)
Q Consensus 272 ~~k~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-~~----~~G-i-di~~ 340 (448)
+.++||+|+++..+..+.+.+++. ++.+..++|+.+...+...+. +..+|+|+|. .+ ..+ + ++.+
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHHHhcccccccc
Confidence 678999999999999888877664 889999999987655433222 2578999992 22 222 2 4555
Q ss_pred ccEEEE
Q 013176 341 IKCVVN 346 (448)
Q Consensus 341 ~~~Vi~ 346 (448)
+++||.
T Consensus 372 ~~~iVi 377 (797)
T 4a2q_A 372 FTLMIF 377 (797)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 677664
No 407
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=61.87 E-value=4.8 Score=35.93 Aligned_cols=20 Identities=25% Similarity=0.203 Sum_probs=16.3
Q ss_pred hhcCCcEEEEcCCCChHHHH
Q 013176 61 ALKGRDLIGIAETGSGKTLS 80 (448)
Q Consensus 61 ~~~~~~~lv~~~tGsGKT~~ 80 (448)
+-.|+.+.+++|+|+|||..
T Consensus 123 i~~Ge~vaIvGpsGsGKSTL 142 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSML 142 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHH
T ss_pred ecCCCEEEEECCCCCcHHHH
Confidence 33567888999999999964
No 408
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=61.85 E-value=4.9 Score=32.71 Aligned_cols=17 Identities=18% Similarity=0.253 Sum_probs=14.0
Q ss_pred cEEEEcCCCChHHHHHH
Q 013176 66 DLIGIAETGSGKTLSYL 82 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~~~ 82 (448)
.+++.|++|||||..+-
T Consensus 5 ~I~l~G~~GsGKsT~a~ 21 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCA 21 (196)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47888999999997643
No 409
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=61.79 E-value=3 Score=37.94 Aligned_cols=18 Identities=17% Similarity=0.335 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCChHHHHH
Q 013176 64 GRDLIGIAETGSGKTLSY 81 (448)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~ 81 (448)
..++++.||+|+|||..+
T Consensus 45 ~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp GCCEEEECCGGGCTTHHH
T ss_pred CceEEEECCCCccHHHHH
Confidence 357999999999999754
No 410
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=61.78 E-value=5.5 Score=36.47 Aligned_cols=18 Identities=39% Similarity=0.517 Sum_probs=14.2
Q ss_pred CCc--EEEEcCCCChHHHHH
Q 013176 64 GRD--LIGIAETGSGKTLSY 81 (448)
Q Consensus 64 ~~~--~lv~~~tGsGKT~~~ 81 (448)
|.+ ++..|.||||||.+.
T Consensus 83 G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 83 GCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp CCEEEEEEECCTTSSHHHHH
T ss_pred CceeEEEeeCCCCCCCCEEE
Confidence 554 567799999999873
No 411
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=61.66 E-value=4.7 Score=33.67 Aligned_cols=17 Identities=24% Similarity=0.270 Sum_probs=14.0
Q ss_pred cEEEEcCCCChHHHHHH
Q 013176 66 DLIGIAETGSGKTLSYL 82 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~~~ 82 (448)
.+++.|+.|||||..+-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47889999999998643
No 412
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=61.09 E-value=2.5 Score=34.09 Aligned_cols=17 Identities=6% Similarity=0.071 Sum_probs=8.4
Q ss_pred CCChHHHHHHHHHHHHh
Q 013176 378 HSNAKFARDLIKILQEA 394 (448)
Q Consensus 378 ~~~~~~~~~l~~~~~~~ 394 (448)
+.|...++.+.+.+.+.
T Consensus 109 ~~DeakI~aL~~Ei~~L 125 (175)
T 3lay_A 109 SPDTAKINAVAKEMESL 125 (175)
T ss_dssp SCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 34555555555444443
No 413
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=61.02 E-value=18 Score=35.04 Aligned_cols=73 Identities=12% Similarity=0.204 Sum_probs=47.5
Q ss_pred CCcEEEEecchhHHHHHHHHHHhC----CCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEec-cc----cCC-C-CCCC
Q 013176 272 GSRILIFTETKKGCDQVTRQLRMD----GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD-VA----ARG-L-DVKD 340 (448)
Q Consensus 272 ~~k~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-~~----~~G-i-di~~ 340 (448)
+.++||.++++.-+..+++.+++. ++.+..++|+.+...+...+. ...+|+|+|. .+ ..+ + ++..
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccccccc
Confidence 668999999999999888887764 889999999987554432222 1468999992 22 222 3 5667
Q ss_pred ccEEEEcC
Q 013176 341 IKCVVNYD 348 (448)
Q Consensus 341 ~~~Vi~~~ 348 (448)
+++||.=.
T Consensus 131 ~~~vViDE 138 (556)
T 4a2p_A 131 FTLMIFDE 138 (556)
T ss_dssp CSEEEEET
T ss_pred CCEEEEEC
Confidence 77776433
No 414
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=61.00 E-value=5.2 Score=33.78 Aligned_cols=17 Identities=24% Similarity=0.223 Sum_probs=14.4
Q ss_pred CcEEEEcCCCChHHHHH
Q 013176 65 RDLIGIAETGSGKTLSY 81 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~ 81 (448)
..+++.|++|||||..+
T Consensus 8 ~~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVS 24 (227)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 46888999999999754
No 415
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=60.96 E-value=5.3 Score=33.30 Aligned_cols=18 Identities=22% Similarity=0.183 Sum_probs=14.1
Q ss_pred cEEEEcCCCChHHHHHHH
Q 013176 66 DLIGIAETGSGKTLSYLL 83 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~~~l 83 (448)
.+++.||+||||+..+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~ 19 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKR 19 (206)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 367889999999976443
No 416
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=60.79 E-value=15 Score=26.79 Aligned_cols=38 Identities=8% Similarity=0.260 Sum_probs=32.0
Q ss_pred hcCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCC
Q 013176 270 MDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKN 307 (448)
Q Consensus 270 ~~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 307 (448)
..+++++|||.+-..+...+..|++.|+....+.|++.
T Consensus 54 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 91 (110)
T 2k0z_A 54 HKDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVY 91 (110)
T ss_dssp CSSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGG
T ss_pred CCCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHH
Confidence 45678999999988899999999999886677888765
No 417
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=60.79 E-value=5.1 Score=33.68 Aligned_cols=18 Identities=17% Similarity=0.040 Sum_probs=14.5
Q ss_pred CcEEEEcCCCChHHHHHH
Q 013176 65 RDLIGIAETGSGKTLSYL 82 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~ 82 (448)
..+.+.|++|||||..+-
T Consensus 6 ~~i~i~G~~GsGKSTl~~ 23 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCK 23 (227)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457889999999997543
No 418
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=60.73 E-value=3.9 Score=34.45 Aligned_cols=19 Identities=32% Similarity=0.099 Sum_probs=15.3
Q ss_pred cCCcEEEEcCCCChHHHHH
Q 013176 63 KGRDLIGIAETGSGKTLSY 81 (448)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~ 81 (448)
.+.-+.+.+|+|+|||...
T Consensus 24 ~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp SSEEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4566888999999999753
No 419
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=60.66 E-value=7.3 Score=38.62 Aligned_cols=25 Identities=28% Similarity=0.279 Sum_probs=19.6
Q ss_pred HHHHhhcCCcEEEEcCCCChHHHHH
Q 013176 57 GWPMALKGRDLIGIAETGSGKTLSY 81 (448)
Q Consensus 57 ~i~~~~~~~~~lv~~~tGsGKT~~~ 81 (448)
+-..+..+..+++.+|+|+|||..+
T Consensus 53 l~~~i~~g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 53 IKTAANQKRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHHHHHTTCCEEEECCTTSSHHHHH
T ss_pred ccccccCCCEEEEEeCCCCCHHHHH
Confidence 3344556789999999999999753
No 420
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=60.64 E-value=5.3 Score=32.19 Aligned_cols=15 Identities=27% Similarity=0.186 Sum_probs=12.8
Q ss_pred cEEEEcCCCChHHHH
Q 013176 66 DLIGIAETGSGKTLS 80 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~ 80 (448)
-.++.+|+|+|||..
T Consensus 28 ~~~i~G~NGsGKStl 42 (182)
T 3kta_A 28 FTAIVGANGSGKSNI 42 (182)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred cEEEECCCCCCHHHH
Confidence 467889999999975
No 421
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=60.61 E-value=3.5 Score=36.50 Aligned_cols=16 Identities=31% Similarity=0.272 Sum_probs=13.3
Q ss_pred cEEEEcCCCChHHHHH
Q 013176 66 DLIGIAETGSGKTLSY 81 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~~ 81 (448)
-+++.||+|||||..+
T Consensus 35 livl~G~sGsGKSTla 50 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLR 50 (287)
T ss_dssp EEEEECCTTSCTHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778899999999753
No 422
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=60.53 E-value=5.9 Score=33.18 Aligned_cols=18 Identities=22% Similarity=0.255 Sum_probs=14.7
Q ss_pred CcEEEEcCCCChHHHHHH
Q 013176 65 RDLIGIAETGSGKTLSYL 82 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~ 82 (448)
..+++.|++|||||..+-
T Consensus 5 ~~I~l~G~~GsGKsT~a~ 22 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAP 22 (220)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 467889999999997643
No 423
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=60.45 E-value=2.8 Score=34.87 Aligned_cols=19 Identities=32% Similarity=-0.039 Sum_probs=14.8
Q ss_pred hcCCcEEEEcCCCChHHHH
Q 013176 62 LKGRDLIGIAETGSGKTLS 80 (448)
Q Consensus 62 ~~~~~~lv~~~tGsGKT~~ 80 (448)
..+.-+.+.|++|||||..
T Consensus 19 ~~~~~i~i~G~~GsGKSTl 37 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTL 37 (207)
T ss_dssp CCCEEEEEEESTTSSHHHH
T ss_pred CCCeEEEEECCCCCCHHHH
Confidence 3344577889999999975
No 424
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=60.42 E-value=6.2 Score=35.44 Aligned_cols=15 Identities=27% Similarity=0.124 Sum_probs=12.6
Q ss_pred cEEEEcCCCChHHHH
Q 013176 66 DLIGIAETGSGKTLS 80 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~ 80 (448)
-+++.++.|+|||..
T Consensus 6 v~~i~G~~GaGKTTl 20 (318)
T 1nij_A 6 VTLLTGFLGAGKTTL 20 (318)
T ss_dssp EEEEEESSSSSCHHH
T ss_pred EEEEEecCCCCHHHH
Confidence 367889999999974
No 425
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=60.27 E-value=8.5 Score=34.17 Aligned_cols=16 Identities=31% Similarity=0.393 Sum_probs=14.0
Q ss_pred cEEEEcCCCChHHHHH
Q 013176 66 DLIGIAETGSGKTLSY 81 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~~ 81 (448)
++++.||+|+|||..+
T Consensus 40 ~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 40 HLLFSGPPGTGKTATA 55 (319)
T ss_dssp CEEEESSSSSSHHHHH
T ss_pred eEEEECcCCcCHHHHH
Confidence 5999999999999753
No 426
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=60.16 E-value=6.8 Score=32.56 Aligned_cols=32 Identities=16% Similarity=0.048 Sum_probs=21.2
Q ss_pred CcHHHHhHHHHhhcCCcEEEEcCCCChHHHHHH
Q 013176 50 PTPIQAQGWPMALKGRDLIGIAETGSGKTLSYL 82 (448)
Q Consensus 50 ~~~~Q~~~i~~~~~~~~~lv~~~tGsGKT~~~~ 82 (448)
.++.+++. ..+..+.-+++.|++|+|||..+-
T Consensus 12 ~~~~~r~~-~~~~~~~~i~~~G~~GsGKsT~~~ 43 (211)
T 1m7g_A 12 LTRSERTE-LRNQRGLTIWLTGLSASGKSTLAV 43 (211)
T ss_dssp CCHHHHHH-HHTSSCEEEEEECSTTSSHHHHHH
T ss_pred cCHHHhhc-ccCCCCCEEEEECCCCCCHHHHHH
Confidence 34455554 234455667888999999997543
No 427
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=60.02 E-value=5.1 Score=32.54 Aligned_cols=16 Identities=25% Similarity=0.094 Sum_probs=13.2
Q ss_pred cEEEEcCCCChHHHHH
Q 013176 66 DLIGIAETGSGKTLSY 81 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~~ 81 (448)
.+++.|+.|||||..+
T Consensus 3 ~I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678899999999754
No 428
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=59.92 E-value=5.7 Score=33.32 Aligned_cols=18 Identities=17% Similarity=0.075 Sum_probs=14.9
Q ss_pred CcEEEEcCCCChHHHHHH
Q 013176 65 RDLIGIAETGSGKTLSYL 82 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~ 82 (448)
..+++.|++|||||..+-
T Consensus 6 ~~I~l~G~~GsGKsT~~~ 23 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCE 23 (222)
T ss_dssp CCEEEEESTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468899999999998644
No 429
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=59.73 E-value=5.1 Score=32.50 Aligned_cols=17 Identities=24% Similarity=0.274 Sum_probs=13.8
Q ss_pred cEEEEcCCCChHHHHHH
Q 013176 66 DLIGIAETGSGKTLSYL 82 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~~~ 82 (448)
.+++.|++|||||..+-
T Consensus 8 ~I~l~G~~GsGKsT~~~ 24 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCA 24 (194)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47788999999998643
No 430
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=59.67 E-value=5.6 Score=34.33 Aligned_cols=19 Identities=16% Similarity=0.067 Sum_probs=15.2
Q ss_pred cCCcEEEEcCCCChHHHHH
Q 013176 63 KGRDLIGIAETGSGKTLSY 81 (448)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~ 81 (448)
.+..+.+.+|+|||||..+
T Consensus 26 ~g~~I~I~G~~GsGKSTl~ 44 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLC 44 (252)
T ss_dssp TSCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3456888899999999753
No 431
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=59.65 E-value=4.3 Score=34.67 Aligned_cols=18 Identities=28% Similarity=0.370 Sum_probs=15.1
Q ss_pred hcCCcEEEEcCCCChHHH
Q 013176 62 LKGRDLIGIAETGSGKTL 79 (448)
Q Consensus 62 ~~~~~~lv~~~tGsGKT~ 79 (448)
..|+-+.+.+|.|+|||.
T Consensus 29 ~~Ge~~~iiG~nGsGKST 46 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKST 46 (235)
T ss_dssp CTTCEEEEECSTTSSHHH
T ss_pred cCCCEEEEECCCCCcHHH
Confidence 356678899999999996
No 432
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=59.55 E-value=10 Score=30.49 Aligned_cols=23 Identities=30% Similarity=0.148 Sum_probs=15.7
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHh
Q 013176 66 DLIGIAETGSGKTLSYLLPAFVHV 89 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~~~l~~l~~~ 89 (448)
-+++.++.|+|||.. +-.++..+
T Consensus 8 ~i~i~G~sGsGKTTl-~~~l~~~l 30 (174)
T 1np6_A 8 LLAFAAWSGTGKTTL-LKKLIPAL 30 (174)
T ss_dssp EEEEECCTTSCHHHH-HHHHHHHH
T ss_pred EEEEEeCCCCCHHHH-HHHHHHhc
Confidence 467889999999964 33344443
No 433
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=59.54 E-value=6 Score=31.33 Aligned_cols=17 Identities=24% Similarity=0.012 Sum_probs=13.9
Q ss_pred cEEEEcCCCChHHHHHH
Q 013176 66 DLIGIAETGSGKTLSYL 82 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~~~ 82 (448)
.+++.++.|||||..+-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGS 18 (168)
T ss_dssp EEEEESCTTSCHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 47889999999997643
No 434
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=59.33 E-value=4.7 Score=33.51 Aligned_cols=17 Identities=24% Similarity=0.171 Sum_probs=13.7
Q ss_pred CCcEEEEcCCCChHHHH
Q 013176 64 GRDLIGIAETGSGKTLS 80 (448)
Q Consensus 64 ~~~~lv~~~tGsGKT~~ 80 (448)
+.-+.|.+|+|||||..
T Consensus 22 g~~v~I~G~sGsGKSTl 38 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTL 38 (208)
T ss_dssp CEEEEEECCTTSCTHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 34577889999999964
No 435
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=59.30 E-value=6.7 Score=32.14 Aligned_cols=41 Identities=15% Similarity=0.073 Sum_probs=23.5
Q ss_pred CCCccEEEEeccccccc--CCCHHHHHHHHHHcCCCcceEEEeccC
Q 013176 172 LRRVTYLVLDEADRMLD--MGFEPQIRKIVTQIRPDRQTLYWSATW 215 (448)
Q Consensus 172 ~~~~~~iIvDE~h~~~~--~~~~~~~~~~~~~~~~~~~~v~~SAT~ 215 (448)
..+.+++|+||+..+.. ..+...+..++. ....+++-|.|.
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~---~~~~~ilgti~v 145 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLS---TPGTIILGTIPV 145 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHH---CSSCCEEEECCC
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHh---CCCcEEEEEeec
Confidence 56688999999866533 224444444443 333455445664
No 436
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=59.17 E-value=5.7 Score=37.49 Aligned_cols=18 Identities=33% Similarity=0.427 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCChHHHHH
Q 013176 64 GRDLIGIAETGSGKTLSY 81 (448)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~ 81 (448)
.+++++.+|+|+|||..+
T Consensus 50 ~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 368999999999999764
No 437
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=59.13 E-value=5.7 Score=33.41 Aligned_cols=18 Identities=22% Similarity=0.298 Sum_probs=14.1
Q ss_pred CcEEEEcCCCChHHHHHH
Q 013176 65 RDLIGIAETGSGKTLSYL 82 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~ 82 (448)
+-+++.+|+||||+..+.
T Consensus 30 kiI~llGpPGsGKgTqa~ 47 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCE 47 (217)
T ss_dssp EEEEEECCTTCCHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 456778999999997644
No 438
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=59.08 E-value=5.8 Score=32.64 Aligned_cols=18 Identities=17% Similarity=0.298 Sum_probs=14.5
Q ss_pred CcEEEEcCCCChHHHHHH
Q 013176 65 RDLIGIAETGSGKTLSYL 82 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~ 82 (448)
..+++.|++|||||..+-
T Consensus 21 ~~I~l~G~~GsGKST~a~ 38 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAV 38 (201)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 357888999999998643
No 439
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=59.07 E-value=5.3 Score=33.03 Aligned_cols=19 Identities=26% Similarity=0.128 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 013176 64 GRDLIGIAETGSGKTLSYL 82 (448)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~ 82 (448)
+.-+++.|+.|||||..+-
T Consensus 4 ~~~I~i~G~~GsGKsT~~~ 22 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQAT 22 (213)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHH
Confidence 3457888999999997543
No 440
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=63.46 E-value=2 Score=34.53 Aligned_cols=73 Identities=18% Similarity=0.254 Sum_probs=47.1
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhH---HHHh-cCCcEEEEccHHHHHHHHccccCCCCc
Q 013176 100 GPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQI---RDLR-RGVEIVIATPGRLIDMLEAQHTNLRRV 175 (448)
Q Consensus 100 ~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~ 175 (448)
..++||.|+++.-+..+.+.++.. ++.+..++|+.+..+.. ..+. ....|+|+| +.+. ...++..+
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT-----~~~~-~Gid~~~~ 99 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREA----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT-----DVAA-RGIDIPDV 99 (170)
Confidence 457899999999988888888764 56777788876543332 2222 246799999 2222 23456666
Q ss_pred cEEEEec
Q 013176 176 TYLVLDE 182 (448)
Q Consensus 176 ~~iIvDE 182 (448)
+++|.-+
T Consensus 100 ~~Vi~~~ 106 (170)
T 2yjt_D 100 SHVFNFD 106 (170)
Confidence 6666533
No 441
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=58.93 E-value=32 Score=35.63 Aligned_cols=55 Identities=13% Similarity=0.085 Sum_probs=43.5
Q ss_pred hcCCcEEEEecchhHHHHHHHHHH----hCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEec
Q 013176 270 MDGSRILIFTETKKGCDQVTRQLR----MDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD 330 (448)
Q Consensus 270 ~~~~k~lVf~~~~~~~~~l~~~L~----~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~ 330 (448)
..+..++|.++|..-|...++.+. ..++.+.++.|+++..+|.... .++|+++|+
T Consensus 118 L~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay------~~DIvyGTp 176 (997)
T 2ipc_A 118 LTGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAY------LADVTYVTN 176 (997)
T ss_dssp TTCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHH------TSSEEEEEH
T ss_pred HhCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECc
Confidence 457789999999998887776654 4589999999999977665543 379999994
No 442
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=58.82 E-value=6.4 Score=37.12 Aligned_cols=18 Identities=28% Similarity=0.279 Sum_probs=14.7
Q ss_pred cEEEEcCCCChHHHHHHH
Q 013176 66 DLIGIAETGSGKTLSYLL 83 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~~~l 83 (448)
.+++++++|+|||..+.-
T Consensus 101 vI~ivG~~GvGKTTla~~ 118 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAAK 118 (432)
T ss_dssp CEEEECCSSSSTTHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 688889999999976443
No 443
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=58.75 E-value=1.2e+02 Score=28.82 Aligned_cols=74 Identities=11% Similarity=0.007 Sum_probs=47.3
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhH---HHH-hcCCcEEEEccHHHHHHHHccccCCCCccE
Q 013176 102 IVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQI---RDL-RRGVEIVIATPGRLIDMLEAQHTNLRRVTY 177 (448)
Q Consensus 102 ~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~ 177 (448)
..++++.+..-+..+.+.+.+. +.++..++|+.+..+.. ..+ ....+|+|+|++.+.. .+++.++++
T Consensus 349 ~~~ivf~~~~~~~~l~~~L~~~----~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~-----GiDip~v~~ 419 (510)
T 2oca_A 349 NAFVMFKHVSHGKAIFDLIKNE----YDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFST-----GISVKNLHH 419 (510)
T ss_dssp EEEEEESSHHHHHHHHHHHHTT----CSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHH-----SCCCCSEEE
T ss_pred CeEEEEecHHHHHHHHHHHHHc----CCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhc-----ccccccCcE
Confidence 3444444465555566666553 34788888877654432 222 2457899999766533 567888999
Q ss_pred EEEeccc
Q 013176 178 LVLDEAD 184 (448)
Q Consensus 178 iIvDE~h 184 (448)
+|+....
T Consensus 420 vi~~~~~ 426 (510)
T 2oca_A 420 VVLAHGV 426 (510)
T ss_dssp EEESSCC
T ss_pred EEEeCCC
Confidence 9987776
No 444
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=58.53 E-value=6.2 Score=36.27 Aligned_cols=16 Identities=19% Similarity=0.260 Sum_probs=13.4
Q ss_pred cEEEEcCCCChHHHHH
Q 013176 66 DLIGIAETGSGKTLSY 81 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~~ 81 (448)
-+++.||+|+|||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4678999999999754
No 445
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=58.41 E-value=5.6 Score=38.04 Aligned_cols=53 Identities=15% Similarity=0.281 Sum_probs=29.2
Q ss_pred CcccccccCCCCHHHHHHHHHC-C-CCCCcHHHHhHHHHh--hcCCcEEEEcCCCChHHHHH
Q 013176 24 RPIRIFQEANFPDYCLEVIAKL-G-FVEPTPIQAQGWPMA--LKGRDLIGIAETGSGKTLSY 81 (448)
Q Consensus 24 ~p~~~~~~~~l~~~l~~~~~~~-~-~~~~~~~Q~~~i~~~--~~~~~~lv~~~tGsGKT~~~ 81 (448)
.+..+|++..=.+...+.++.. . +..+. .+..+ ...+.+++.+|+|+|||+.+
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~l~~~~-----~~~~~g~~~p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEFLKDPS-----KFNRIGARMPKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHHHHCTH-----HHHTTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHhhChH-----HHhhcCCCCCCeEEEECCCCCCHHHHH
Confidence 3556788875555555444431 0 11111 11111 12356999999999999753
No 446
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=58.28 E-value=8.1 Score=37.26 Aligned_cols=51 Identities=12% Similarity=0.010 Sum_probs=29.3
Q ss_pred hcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEcCcHHHHHHHHHHH
Q 013176 62 LKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEA 120 (448)
Q Consensus 62 ~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~P~~~L~~q~~~~~ 120 (448)
..+.-+++.|++|+|||..++ .++..+... .+..++++.-- .-..|+..++
T Consensus 240 ~~G~l~li~G~pG~GKT~lal-~~a~~~a~~------~g~~vl~~s~E-~s~~~l~~r~ 290 (503)
T 1q57_A 240 RGGEVIMVTSGSGMVMSTFVR-QQALQWGTA------MGKKVGLAMLE-ESVEETAEDL 290 (503)
T ss_dssp CTTCEEEEEESSCHHHHHHHH-HHHHHHTTT------SCCCEEEEESS-SCHHHHHHHH
T ss_pred CCCeEEEEeecCCCCchHHHH-HHHHHHHHh------cCCcEEEEecc-CCHHHHHHHH
Confidence 344567888999999996543 333333321 13457777542 2244555554
No 447
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=58.23 E-value=6.1 Score=29.90 Aligned_cols=38 Identities=16% Similarity=0.181 Sum_probs=32.0
Q ss_pred hcCCcEEEEecchhHHHHHHHHHHhCCCC-eEEEcCCCC
Q 013176 270 MDGSRILIFTETKKGCDQVTRQLRMDGWP-ALSIHGDKN 307 (448)
Q Consensus 270 ~~~~k~lVf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~ 307 (448)
..+++++|||.+-..+...+..|++.|+. +..+.|++.
T Consensus 80 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 118 (129)
T 1tq1_A 80 GQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYS 118 (129)
T ss_dssp CTTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHH
T ss_pred CCCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 35678999999988888999999998884 888888865
No 448
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=58.10 E-value=8.9 Score=34.05 Aligned_cols=69 Identities=14% Similarity=0.036 Sum_probs=46.8
Q ss_pred CcEEEEecchhHHHHHHHHHHhC-----CCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEecc-c-----c-CCCCCCC
Q 013176 273 SRILIFTETKKGCDQVTRQLRMD-----GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDV-A-----A-RGLDVKD 340 (448)
Q Consensus 273 ~k~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~-~-----~-~Gidi~~ 340 (448)
.++||.+++++-|.++++.++.. +..+..+.++...... .....+|+|+|.- + . ..+++..
T Consensus 163 ~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~TP~~l~~~l~~~~~~~l~~ 235 (300)
T 3fmo_B 163 PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWCSKLKFIDPKK 235 (300)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT-------CCCCCSEEEECHHHHHHHHTTTCCCCGGG
T ss_pred ceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh-------hcCCCCEEEECHHHHHHHHHhcCCCChhh
Confidence 37999999999999988877653 4566777766543211 1345689999932 1 1 3567778
Q ss_pred ccEEEEcC
Q 013176 341 IKCVVNYD 348 (448)
Q Consensus 341 ~~~Vi~~~ 348 (448)
++++|+=.
T Consensus 236 l~~lVlDE 243 (300)
T 3fmo_B 236 IKVFVLDE 243 (300)
T ss_dssp CSEEEETT
T ss_pred ceEEEEeC
Confidence 88877544
No 449
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=57.94 E-value=6 Score=32.68 Aligned_cols=15 Identities=33% Similarity=0.162 Sum_probs=12.7
Q ss_pred EEEEcCCCChHHHHH
Q 013176 67 LIGIAETGSGKTLSY 81 (448)
Q Consensus 67 ~lv~~~tGsGKT~~~ 81 (448)
+.+.|+.|||||...
T Consensus 5 i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEECSTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678899999999753
No 450
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=57.90 E-value=23 Score=35.11 Aligned_cols=68 Identities=16% Similarity=0.174 Sum_probs=46.6
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhhcCCCceEEEEEcCCCchHhHHHHh-cCCcEEEEccHHHHHHHHccccCCCCccEE
Q 013176 100 GPIVLVLAPTRELAVQIQEEALKFGSRAGIRSTCIYGGAPKGPQIRDLR-RGVEIVIATPGRLIDMLEAQHTNLRRVTYL 178 (448)
Q Consensus 100 ~~~vlil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~~~i 178 (448)
+.++||.|+++.-++.+++.+++. ++++..+++.... .....+. ...+|+|+| +.+.. .+++. +++|
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~R~-~~l~~F~~g~~~VLVaT-----dv~~r-GiDi~-v~~V 422 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTFD-TEYPKTKLTDWDFVVTT-----DISEM-GANFR-AGRV 422 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTTHH-HHTTHHHHSCCSEEEEC-----GGGGT-TCCCC-CSEE
T ss_pred CCCEEEEECChhHHHHHHHHHHHc----CCcEEEEChHHHH-HHHHhhcCCCcEEEEEC-----cHHHc-CcccC-ceEE
Confidence 457999999999999999999875 6678888875322 2233333 467899999 44443 34554 6665
Q ss_pred E
Q 013176 179 V 179 (448)
Q Consensus 179 I 179 (448)
|
T Consensus 423 I 423 (618)
T 2whx_A 423 I 423 (618)
T ss_dssp E
T ss_pred E
Confidence 4
No 451
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=57.82 E-value=35 Score=35.16 Aligned_cols=55 Identities=16% Similarity=0.141 Sum_probs=43.0
Q ss_pred hcCCcEEEEecchhHHHHHHHHHH----hCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEec
Q 013176 270 MDGSRILIFTETKKGCDQVTRQLR----MDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD 330 (448)
Q Consensus 270 ~~~~k~lVf~~~~~~~~~l~~~L~----~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~ 330 (448)
..+..++|.++|..-|...++.+. ..++.+.++.++++..+|.... .++|+++|+
T Consensus 150 L~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y------~~DIvygTp 208 (922)
T 1nkt_A 150 LAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY------NADITYGTN 208 (922)
T ss_dssp TTTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEH
T ss_pred HhCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECc
Confidence 456789999999998877776654 3589999999999977665433 368999994
No 452
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=57.72 E-value=6.1 Score=31.79 Aligned_cols=18 Identities=28% Similarity=0.268 Sum_probs=14.3
Q ss_pred CCcEEEEcCCCChHHHHH
Q 013176 64 GRDLIGIAETGSGKTLSY 81 (448)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~ 81 (448)
+..+.+.++.|||||..+
T Consensus 5 g~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 445778899999999753
No 453
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=57.62 E-value=6.2 Score=32.35 Aligned_cols=16 Identities=19% Similarity=0.281 Sum_probs=13.2
Q ss_pred cEEEEcCCCChHHHHH
Q 013176 66 DLIGIAETGSGKTLSY 81 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~~ 81 (448)
.+++.|++|||||...
T Consensus 2 ~I~i~G~~GsGKsT~~ 17 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTIS 17 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 3678899999999753
No 454
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=57.37 E-value=10 Score=34.68 Aligned_cols=16 Identities=31% Similarity=0.424 Sum_probs=13.3
Q ss_pred cEEEEcCCCChHHHHH
Q 013176 66 DLIGIAETGSGKTLSY 81 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~~ 81 (448)
-+.+++|+|+|||...
T Consensus 159 vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSL 174 (359)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCChHHHHH
Confidence 4778899999999753
No 455
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=57.25 E-value=5 Score=34.30 Aligned_cols=18 Identities=22% Similarity=0.368 Sum_probs=15.2
Q ss_pred hcCCcEEEEcCCCChHHH
Q 013176 62 LKGRDLIGIAETGSGKTL 79 (448)
Q Consensus 62 ~~~~~~lv~~~tGsGKT~ 79 (448)
..|+-+.+.+|.|+|||.
T Consensus 29 ~~Ge~~~i~G~nGsGKST 46 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSS 46 (237)
T ss_dssp CTTCEEEEECSTTSSHHH
T ss_pred CCCCEEEEECCCCCCHHH
Confidence 356678899999999996
No 456
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=57.12 E-value=4.4 Score=32.63 Aligned_cols=16 Identities=31% Similarity=0.198 Sum_probs=13.0
Q ss_pred cEEEEcCCCChHHHHH
Q 013176 66 DLIGIAETGSGKTLSY 81 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~~ 81 (448)
-+.+++++|+|||...
T Consensus 4 ~v~IvG~SGsGKSTL~ 19 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLI 19 (171)
T ss_dssp EEEEEESCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678899999999753
No 457
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=56.93 E-value=48 Score=24.56 Aligned_cols=55 Identities=9% Similarity=0.107 Sum_probs=38.6
Q ss_pred HHHHHHhhhcCCcEEEEecc------hhHHHHHHHHHHhCCCC---eEEEcCCCCHHHHHHHHH
Q 013176 262 LIKLLKEVMDGSRILIFTET------KKGCDQVTRQLRMDGWP---ALSIHGDKNQSERDWVLA 316 (448)
Q Consensus 262 l~~~l~~~~~~~k~lVf~~~------~~~~~~l~~~L~~~~~~---~~~~~~~~~~~~r~~~~~ 316 (448)
+.+.++......+++||..+ -..|....+.|.+.+++ ...+.-..+.+.+....+
T Consensus 5 ~~~~v~~~i~~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~~~~~~~~l~~ 68 (121)
T 3gx8_A 5 IRKAIEDAIESAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIKE 68 (121)
T ss_dssp HHHHHHHHHHSCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTTCHHHHHHHHH
T ss_pred HHHHHHHHhccCCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecCCHHHHHHHHH
Confidence 34555666667889999884 77899999999998877 555655555555554443
No 458
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=56.81 E-value=5.7 Score=32.93 Aligned_cols=17 Identities=29% Similarity=-0.027 Sum_probs=13.6
Q ss_pred CcEEEEcCCCChHHHHH
Q 013176 65 RDLIGIAETGSGKTLSY 81 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~ 81 (448)
.-+.+.||+|||||..+
T Consensus 7 ~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLA 23 (211)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 35678899999999753
No 459
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=56.51 E-value=6.7 Score=32.28 Aligned_cols=16 Identities=19% Similarity=0.314 Sum_probs=13.4
Q ss_pred cEEEEcCCCChHHHHH
Q 013176 66 DLIGIAETGSGKTLSY 81 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~~ 81 (448)
.+++.|+.|||||..+
T Consensus 17 ~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778899999999754
No 460
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=56.49 E-value=6.1 Score=32.95 Aligned_cols=17 Identities=18% Similarity=0.141 Sum_probs=13.9
Q ss_pred cEEEEcCCCChHHHHHH
Q 013176 66 DLIGIAETGSGKTLSYL 82 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~~~ 82 (448)
.+++.|++|||||..+-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQ 18 (214)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47889999999997643
No 461
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=56.35 E-value=4.7 Score=37.17 Aligned_cols=15 Identities=40% Similarity=0.390 Sum_probs=12.9
Q ss_pred cEEEEcCCCChHHHH
Q 013176 66 DLIGIAETGSGKTLS 80 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~ 80 (448)
-.++.|+||+|||..
T Consensus 27 l~vi~G~NGaGKT~i 41 (371)
T 3auy_A 27 IVAIIGENGSGKSSI 41 (371)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 467889999999975
No 462
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=56.27 E-value=5.6 Score=33.37 Aligned_cols=19 Identities=32% Similarity=0.181 Sum_probs=15.7
Q ss_pred hcCCcEEEEcCCCChHHHH
Q 013176 62 LKGRDLIGIAETGSGKTLS 80 (448)
Q Consensus 62 ~~~~~~lv~~~tGsGKT~~ 80 (448)
..|+-+.+.+|.|+|||..
T Consensus 33 ~~Ge~~~iiG~NGsGKSTL 51 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTL 51 (214)
T ss_dssp ETTCCEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3567788999999999973
No 463
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=56.17 E-value=6.5 Score=32.38 Aligned_cols=16 Identities=19% Similarity=0.154 Sum_probs=13.3
Q ss_pred cEEEEcCCCChHHHHH
Q 013176 66 DLIGIAETGSGKTLSY 81 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~~ 81 (448)
.+.+.|++|||||..+
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4778899999999753
No 464
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=56.12 E-value=16 Score=39.06 Aligned_cols=67 Identities=16% Similarity=0.164 Sum_probs=50.3
Q ss_pred hhcCCcEEEEecchhHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEe-----ccccCCC-CCCCcc
Q 013176 269 VMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQSERDWVLAEFRSGRSPIMTAT-----DVAARGL-DVKDIK 342 (448)
Q Consensus 269 ~~~~~k~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T-----~~~~~Gi-di~~~~ 342 (448)
...+.+++|.++++.-+.+.++.+++....+..++|+.+. ++..+|+|+| +.+..+- .+.++.
T Consensus 224 l~~g~rvlvl~PtraLa~Q~~~~l~~~~~~VglltGd~~~-----------~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~ 292 (1108)
T 3l9o_A 224 LKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDITI-----------NPDAGCLVMTTEILRSMLYRGSEVMREVA 292 (1108)
T ss_dssp HHTTCEEEEEESSHHHHHHHHHHHHHHTSSEEEECSSCBC-----------CCSCSEEEEEHHHHHHHHHHCSSHHHHEE
T ss_pred HhcCCeEEEEcCcHHHHHHHHHHHHHHhCCccEEeCcccc-----------CCCCCEEEeChHHHHHHHHcCccccccCC
Confidence 3457899999999999999999998876688899998772 3568899999 3333332 244566
Q ss_pred EEEE
Q 013176 343 CVVN 346 (448)
Q Consensus 343 ~Vi~ 346 (448)
+||+
T Consensus 293 lVVI 296 (1108)
T 3l9o_A 293 WVIF 296 (1108)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6664
No 465
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=56.02 E-value=11 Score=31.98 Aligned_cols=74 Identities=23% Similarity=0.290 Sum_probs=46.9
Q ss_pred CCcEEEEecchhHHHHHHHHHHhC----CCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEec-cc----cC---CCCCC
Q 013176 272 GSRILIFTETKKGCDQVTRQLRMD----GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD-VA----AR---GLDVK 339 (448)
Q Consensus 272 ~~k~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-~~----~~---Gidi~ 339 (448)
+.++||.+++++-+.++++.+++. +..+..++++.... ........+..+|+|+|. .+ .. .+++.
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~ 174 (245)
T 3dkp_A 98 GFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAA---KKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLA 174 (245)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHH---TTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHH---HHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccc
Confidence 457999999999999999888764 45555554432211 111122245678999992 11 12 47777
Q ss_pred CccEEEEcC
Q 013176 340 DIKCVVNYD 348 (448)
Q Consensus 340 ~~~~Vi~~~ 348 (448)
+++++|.=.
T Consensus 175 ~~~~lViDE 183 (245)
T 3dkp_A 175 SVEWLVVDE 183 (245)
T ss_dssp TCCEEEESS
T ss_pred cCcEEEEeC
Confidence 888877544
No 466
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=56.01 E-value=8.9 Score=29.39 Aligned_cols=40 Identities=15% Similarity=0.275 Sum_probs=33.2
Q ss_pred hhhcCCcEEEEecchhHHHHHHHHHHhCCC-CeEEEcCCCC
Q 013176 268 EVMDGSRILIFTETKKGCDQVTRQLRMDGW-PALSIHGDKN 307 (448)
Q Consensus 268 ~~~~~~k~lVf~~~~~~~~~l~~~L~~~~~-~~~~~~~~~~ 307 (448)
....+++++|||.+-..+...+..|++.|+ ++..+.|++.
T Consensus 78 ~l~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 118 (137)
T 1qxn_A 78 GLDPEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMD 118 (137)
T ss_dssp CCCTTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHH
T ss_pred cCCCCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcHH
Confidence 334577899999998888899999999998 5888988864
No 467
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=55.77 E-value=9.9 Score=33.73 Aligned_cols=18 Identities=22% Similarity=0.217 Sum_probs=13.8
Q ss_pred cEEEEcCCCChHHHHHHH
Q 013176 66 DLIGIAETGSGKTLSYLL 83 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~~~l 83 (448)
-+++.+++|+|||.....
T Consensus 100 vi~i~G~~G~GKTT~~~~ 117 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAGK 117 (297)
T ss_dssp EEEEECSSCSSTTHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 466779999999976443
No 468
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=55.74 E-value=7.3 Score=32.57 Aligned_cols=18 Identities=39% Similarity=0.447 Sum_probs=14.6
Q ss_pred CcEEEEcCCCChHHHHHH
Q 013176 65 RDLIGIAETGSGKTLSYL 82 (448)
Q Consensus 65 ~~~lv~~~tGsGKT~~~~ 82 (448)
..+++.+++|||||..+-
T Consensus 6 ~~I~l~G~~GsGKsT~a~ 23 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCE 23 (217)
T ss_dssp CEEEEEECTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457889999999997643
No 469
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=55.57 E-value=6.8 Score=32.40 Aligned_cols=20 Identities=25% Similarity=0.187 Sum_probs=15.7
Q ss_pred cCCcEEEEcCCCChHHHHHH
Q 013176 63 KGRDLIGIAETGSGKTLSYL 82 (448)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~~ 82 (448)
.+.-+++.|+.|||||...-
T Consensus 9 ~~~~I~l~G~~GsGKST~~~ 28 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSK 28 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHH
Confidence 34568888999999998643
No 470
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=55.43 E-value=6.7 Score=32.16 Aligned_cols=16 Identities=25% Similarity=0.123 Sum_probs=13.3
Q ss_pred cEEEEcCCCChHHHHH
Q 013176 66 DLIGIAETGSGKTLSY 81 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~~ 81 (448)
.+.+.+++|||||.++
T Consensus 10 ~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVA 25 (203)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678899999999754
No 471
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=55.41 E-value=1.2e+02 Score=27.36 Aligned_cols=16 Identities=19% Similarity=0.140 Sum_probs=13.4
Q ss_pred cEEEEcCCCChHHHHH
Q 013176 66 DLIGIAETGSGKTLSY 81 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~~ 81 (448)
.+.+++++|+|||..+
T Consensus 81 ~I~i~G~~G~GKSTl~ 96 (355)
T 3p32_A 81 RVGITGVPGVGKSTAI 96 (355)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788899999999753
No 472
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=55.11 E-value=7.5 Score=32.19 Aligned_cols=19 Identities=16% Similarity=0.100 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 013176 64 GRDLIGIAETGSGKTLSYL 82 (448)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~ 82 (448)
+.-+++.|+.|||||..+-
T Consensus 9 ~~~I~l~G~~GsGKsT~~~ 27 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSR 27 (215)
T ss_dssp CCEEEEEESTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4568888999999997643
No 473
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=55.08 E-value=5.8 Score=35.44 Aligned_cols=18 Identities=28% Similarity=0.497 Sum_probs=15.4
Q ss_pred cCCcEEEEcCCCChHHHH
Q 013176 63 KGRDLIGIAETGSGKTLS 80 (448)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~ 80 (448)
.|+-+.+++|+|+|||..
T Consensus 79 ~Ge~vaivG~sGsGKSTL 96 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTI 96 (306)
T ss_dssp TTCEEEEESSSCHHHHHH
T ss_pred CCCEEEEECCCCchHHHH
Confidence 567789999999999974
No 474
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=54.81 E-value=6.3 Score=31.71 Aligned_cols=19 Identities=21% Similarity=0.013 Sum_probs=11.0
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 013176 64 GRDLIGIAETGSGKTLSYL 82 (448)
Q Consensus 64 ~~~~lv~~~tGsGKT~~~~ 82 (448)
+.-+++.|+.|||||..+-
T Consensus 5 ~~~I~l~G~~GsGKST~a~ 23 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAH 23 (183)
T ss_dssp CCEEEEECCC----CHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3457889999999998643
No 475
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=54.65 E-value=7.4 Score=31.57 Aligned_cols=16 Identities=31% Similarity=0.160 Sum_probs=13.2
Q ss_pred EEEEcCCCChHHHHHH
Q 013176 67 LIGIAETGSGKTLSYL 82 (448)
Q Consensus 67 ~lv~~~tGsGKT~~~~ 82 (448)
+++.|+.|||||...-
T Consensus 3 I~l~G~~GsGKsT~~~ 18 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAK 18 (195)
T ss_dssp EEEECSTTSCHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6788999999997643
No 476
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=54.58 E-value=37 Score=30.01 Aligned_cols=70 Identities=20% Similarity=0.195 Sum_probs=49.0
Q ss_pred CCcEEEEecchhHHHHHHHHHHhC----CCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEecc-c----c-CCCCCCCc
Q 013176 272 GSRILIFTETKKGCDQVTRQLRMD----GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATDV-A----A-RGLDVKDI 341 (448)
Q Consensus 272 ~~k~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~-~----~-~Gidi~~~ 341 (448)
+.++||.++++.-+..+++.+++. +..+..++++.+..+... .+. ..+|+|+|.- + . ..+++..+
T Consensus 56 ~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (337)
T 2z0m_A 56 GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQIN---RVR--NADIVVATPGRLLDLWSKGVIDLSSF 130 (337)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHH---HHT--TCSEEEECHHHHHHHHHTTSCCGGGC
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHh---hcC--CCCEEEECHHHHHHHHHcCCcchhhC
Confidence 678999999999999999888753 577888999888655432 233 3789999932 1 1 23455566
Q ss_pred cEEEE
Q 013176 342 KCVVN 346 (448)
Q Consensus 342 ~~Vi~ 346 (448)
++||.
T Consensus 131 ~~iVi 135 (337)
T 2z0m_A 131 EIVII 135 (337)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 66663
No 477
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=54.56 E-value=5.9 Score=33.65 Aligned_cols=19 Identities=37% Similarity=0.389 Sum_probs=15.6
Q ss_pred hcCCcEEEEcCCCChHHHH
Q 013176 62 LKGRDLIGIAETGSGKTLS 80 (448)
Q Consensus 62 ~~~~~~lv~~~tGsGKT~~ 80 (448)
.+|+-+.+.+|.|+|||..
T Consensus 32 ~~Ge~~~i~G~nGsGKSTL 50 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSL 50 (229)
T ss_dssp ETTCEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3566788999999999963
No 478
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=54.53 E-value=13 Score=28.76 Aligned_cols=37 Identities=8% Similarity=0.123 Sum_probs=30.7
Q ss_pred cCCcEEEEecchhHHHHHHHHHHhCCC-CeEEEcCCCC
Q 013176 271 DGSRILIFTETKKGCDQVTRQLRMDGW-PALSIHGDKN 307 (448)
Q Consensus 271 ~~~k~lVf~~~~~~~~~l~~~L~~~~~-~~~~~~~~~~ 307 (448)
.+.+++|||.+-..+...+..|++.|+ ++..+.|++.
T Consensus 79 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 79 HERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp --CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 467899999998888889999999998 5889988875
No 479
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=54.53 E-value=9.2 Score=31.66 Aligned_cols=16 Identities=31% Similarity=0.295 Sum_probs=13.2
Q ss_pred cEEEEcCCCChHHHHH
Q 013176 66 DLIGIAETGSGKTLSY 81 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~~ 81 (448)
-.++.+|+|+|||...
T Consensus 25 ~~~I~G~NgsGKStil 40 (203)
T 3qks_A 25 INLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEEcCCCCCHHHHH
Confidence 4678899999999753
No 480
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=54.39 E-value=5.8 Score=34.37 Aligned_cols=17 Identities=24% Similarity=0.089 Sum_probs=13.9
Q ss_pred cEEEEcCCCChHHHHHH
Q 013176 66 DLIGIAETGSGKTLSYL 82 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~~~ 82 (448)
-++++|++|||||..+-
T Consensus 6 lIvl~G~pGSGKSTla~ 22 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFSK 22 (260)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEEcCCCCCHHHHHH
Confidence 47888999999997643
No 481
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=54.23 E-value=5.8 Score=34.81 Aligned_cols=19 Identities=21% Similarity=0.258 Sum_probs=15.4
Q ss_pred hcCCcEEEEcCCCChHHHH
Q 013176 62 LKGRDLIGIAETGSGKTLS 80 (448)
Q Consensus 62 ~~~~~~lv~~~tGsGKT~~ 80 (448)
..|.-+.+.+|.|+|||..
T Consensus 32 ~~Ge~~~iiGpnGsGKSTL 50 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTL 50 (275)
T ss_dssp ETTSEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3466788999999999973
No 482
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=54.03 E-value=5.9 Score=34.10 Aligned_cols=19 Identities=26% Similarity=0.343 Sum_probs=15.6
Q ss_pred hcCCcEEEEcCCCChHHHH
Q 013176 62 LKGRDLIGIAETGSGKTLS 80 (448)
Q Consensus 62 ~~~~~~lv~~~tGsGKT~~ 80 (448)
..|+-+.+.+|.|+|||..
T Consensus 33 ~~Ge~~~i~G~nGsGKSTL 51 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTL 51 (247)
T ss_dssp ETTCEEEEECSTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3566788999999999973
No 483
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=53.90 E-value=6.1 Score=34.34 Aligned_cols=19 Identities=32% Similarity=0.370 Sum_probs=15.7
Q ss_pred hcCCcEEEEcCCCChHHHH
Q 013176 62 LKGRDLIGIAETGSGKTLS 80 (448)
Q Consensus 62 ~~~~~~lv~~~tGsGKT~~ 80 (448)
..|+-+.+.+|.|+|||..
T Consensus 44 ~~Ge~~~i~G~nGsGKSTL 62 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTI 62 (260)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3567788999999999973
No 484
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=53.80 E-value=7.8 Score=32.60 Aligned_cols=17 Identities=24% Similarity=0.280 Sum_probs=13.8
Q ss_pred cEEEEcCCCChHHHHHH
Q 013176 66 DLIGIAETGSGKTLSYL 82 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~~~ 82 (448)
.+++.|+.|||||..+-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGN 18 (223)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36788999999997643
No 485
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=53.64 E-value=14 Score=34.86 Aligned_cols=18 Identities=28% Similarity=0.158 Sum_probs=14.1
Q ss_pred cEEEEcCCCChHHHHHHH
Q 013176 66 DLIGIAETGSGKTLSYLL 83 (448)
Q Consensus 66 ~~lv~~~tGsGKT~~~~l 83 (448)
.++++++.|+|||.+..-
T Consensus 102 vI~ivG~~GvGKTT~a~~ 119 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGK 119 (433)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 466779999999987543
No 486
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=53.58 E-value=13 Score=39.26 Aligned_cols=74 Identities=15% Similarity=0.206 Sum_probs=43.8
Q ss_pred HHhcCCeEEecCCCCCcccccccCC--CCHHHHHHHHHCCCCC--C--cHHHHhHHHHhhc---CCcEEEEcCCCChHHH
Q 013176 9 YRARREITVEGHDVPRPIRIFQEAN--FPDYCLEVIAKLGFVE--P--TPIQAQGWPMALK---GRDLIGIAETGSGKTL 79 (448)
Q Consensus 9 ~~~~~~~~~~~~~~~~p~~~~~~~~--l~~~l~~~~~~~~~~~--~--~~~Q~~~i~~~~~---~~~~lv~~~tGsGKT~ 79 (448)
|.+..-....|. +---+++|..++ .++...+..+.....+ | +.+=..|+..+.. ++.+++.|..|+|||.
T Consensus 81 y~~~~IYTy~G~-iLIaVNPyk~lp~iY~~~~~~~Y~g~~~~~lpPHIfaiA~~AY~~M~~~~~nQsIiiSGESGAGKTe 159 (1052)
T 4anj_A 81 YSKDRIYTYVAN-ILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTE 159 (1052)
T ss_dssp HHTTCCEEEETT-EEEEECCSSCCTTTTSHHHHHHHTTCCBTTBCSCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHH
T ss_pred HcCCCcEEeECC-EEEEECCCCCccccCCHHHHHHhcCCCCCCCCCcHHHHHHHHHHHHHHhCCCceEEEecCCCCCHHH
Confidence 433333344452 334456666664 3677777766544333 3 3334455555553 4689999999999998
Q ss_pred HHHH
Q 013176 80 SYLL 83 (448)
Q Consensus 80 ~~~l 83 (448)
+.-.
T Consensus 160 stK~ 163 (1052)
T 4anj_A 160 NTKF 163 (1052)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7644
No 487
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=53.48 E-value=31 Score=31.73 Aligned_cols=72 Identities=19% Similarity=0.233 Sum_probs=49.4
Q ss_pred cCCcEEEEecchhHHHHHHHHHHhC----CCCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEec-----cc-cCCCCCCC
Q 013176 271 DGSRILIFTETKKGCDQVTRQLRMD----GWPALSIHGDKNQSERDWVLAEFRSGRSPIMTATD-----VA-ARGLDVKD 340 (448)
Q Consensus 271 ~~~k~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~-~~Gidi~~ 340 (448)
.+.++||.++++.-+.++++.+++. +..+..+.++..... ..+.+..+..+|+|+|. .+ ...+++..
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~ 183 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRA---EVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKY 183 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHH---HHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTT
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHH---HHHHHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 4568999999999999888888664 566666677665433 34555667889999993 12 12345555
Q ss_pred ccEEE
Q 013176 341 IKCVV 345 (448)
Q Consensus 341 ~~~Vi 345 (448)
+++||
T Consensus 184 ~~~vV 188 (414)
T 3eiq_A 184 IKMFV 188 (414)
T ss_dssp CCEEE
T ss_pred CcEEE
Confidence 66665
No 488
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=53.44 E-value=7.5 Score=30.76 Aligned_cols=19 Identities=26% Similarity=0.141 Sum_probs=14.9
Q ss_pred hcCCcEEEEcCCCChHHHH
Q 013176 62 LKGRDLIGIAETGSGKTLS 80 (448)
Q Consensus 62 ~~~~~~lv~~~tGsGKT~~ 80 (448)
..+.-+.+.+|.|+|||..
T Consensus 31 ~~Ge~v~L~G~nGaGKTTL 49 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTL 49 (158)
T ss_dssp SSCEEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3455678889999999963
No 489
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=53.38 E-value=6.7 Score=35.24 Aligned_cols=21 Identities=24% Similarity=0.079 Sum_probs=15.8
Q ss_pred cCCcEEEEcCCCChHHHHHHH
Q 013176 63 KGRDLIGIAETGSGKTLSYLL 83 (448)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~~l 83 (448)
.+..+++.+|+|+|||..+.-
T Consensus 122 ~gsviLI~GpPGsGKTtLAlq 142 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHA 142 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHH
Confidence 344578899999999975443
No 490
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=53.36 E-value=8.1 Score=31.45 Aligned_cols=16 Identities=25% Similarity=0.185 Sum_probs=13.1
Q ss_pred EEEEcCCCChHHHHHH
Q 013176 67 LIGIAETGSGKTLSYL 82 (448)
Q Consensus 67 ~lv~~~tGsGKT~~~~ 82 (448)
+++.|+.|||||...-
T Consensus 3 I~l~G~~GsGKsT~~~ 18 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQ 18 (197)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 5778999999997643
No 491
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=53.34 E-value=8 Score=33.07 Aligned_cols=17 Identities=24% Similarity=0.171 Sum_probs=14.3
Q ss_pred CCcEEEEcCCCChHHHH
Q 013176 64 GRDLIGIAETGSGKTLS 80 (448)
Q Consensus 64 ~~~~lv~~~tGsGKT~~ 80 (448)
...+++.||.|||||..
T Consensus 27 ~~~i~l~G~~GsGKSTl 43 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTV 43 (246)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 35688899999999974
No 492
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=53.12 E-value=7.3 Score=31.43 Aligned_cols=20 Identities=20% Similarity=0.154 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCChHHHHHH
Q 013176 63 KGRDLIGIAETGSGKTLSYL 82 (448)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~~~ 82 (448)
.+..+++.++.|+|||..++
T Consensus 15 ~G~gvli~G~SGaGKStlal 34 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSL 34 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHH
Confidence 34678999999999997643
No 493
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=53.04 E-value=3.1 Score=42.05 Aligned_cols=70 Identities=10% Similarity=0.223 Sum_probs=46.4
Q ss_pred CcEEEEecchhHHHHH-HHHHHhCC---CCeEEEcCCCCHHHHHHHHHHHhcCCCCEEEEe-cccc-----------CCC
Q 013176 273 SRILIFTETKKGCDQV-TRQLRMDG---WPALSIHGDKNQSERDWVLAEFRSGRSPIMTAT-DVAA-----------RGL 336 (448)
Q Consensus 273 ~k~lVf~~~~~~~~~l-~~~L~~~~---~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T-~~~~-----------~Gi 336 (448)
.++||.++++.-+..+ ++.|++.. +.+..++|+.+..++...+. +..+|+|+| ..+. ..+
T Consensus 57 ~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~ 132 (699)
T 4gl2_A 57 GKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQILENSLLNLENGEDAGV 132 (699)
T ss_dssp CCBCCEESCSHHHHHHHHHTHHHHHTTTSCEEEEC----CCCCHHHHH----HSCSEEEEEHHHHHHHTC--------CC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHHcCcCceEEEEeCCcchhhHHHhhh----cCCCEEEECHHHHHHHHhccccccccce
Confidence 6899999999999888 88887652 78999999887654333222 468899999 3332 134
Q ss_pred CCCCccEEEE
Q 013176 337 DVKDIKCVVN 346 (448)
Q Consensus 337 di~~~~~Vi~ 346 (448)
.+..+++||.
T Consensus 133 ~~~~~~lvVi 142 (699)
T 4gl2_A 133 QLSDFSLIII 142 (699)
T ss_dssp CGGGCSEEEE
T ss_pred ecccCcEEEE
Confidence 5566777764
No 494
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=53.02 E-value=6.2 Score=34.40 Aligned_cols=18 Identities=28% Similarity=0.385 Sum_probs=15.1
Q ss_pred cCCcEEEEcCCCChHHHH
Q 013176 63 KGRDLIGIAETGSGKTLS 80 (448)
Q Consensus 63 ~~~~~lv~~~tGsGKT~~ 80 (448)
.|+-+.+.+|.|+|||..
T Consensus 36 ~Ge~~~liG~nGsGKSTL 53 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTL 53 (266)
T ss_dssp TTCEEEEECCTTSCHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 466788999999999973
No 495
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=52.90 E-value=8.5 Score=31.60 Aligned_cols=19 Identities=16% Similarity=0.167 Sum_probs=0.0
Q ss_pred EEEEcCCCChHHHHHHHHH
Q 013176 67 LIGIAETGSGKTLSYLLPA 85 (448)
Q Consensus 67 ~lv~~~tGsGKT~~~~l~~ 85 (448)
+.+.|++|||||.++-..+
T Consensus 15 IgltG~~GSGKSTva~~L~ 33 (192)
T 2grj_A 15 IGVTGKIGTGKSTVCEILK 33 (192)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
No 496
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=52.20 E-value=10 Score=38.73 Aligned_cols=31 Identities=23% Similarity=0.063 Sum_probs=0.0
Q ss_pred HhHHHHh--hcCCcEEEEcCCCChHHHHHHHHH
Q 013176 55 AQGWPMA--LKGRDLIGIAETGSGKTLSYLLPA 85 (448)
Q Consensus 55 ~~~i~~~--~~~~~~lv~~~tGsGKT~~~~l~~ 85 (448)
.+.+..+ ....++++.||+|+|||..+-..+
T Consensus 190 ~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la 222 (758)
T 3pxi_A 190 QRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLA 222 (758)
T ss_dssp HHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHH
T ss_pred HHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHH
No 497
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=52.17 E-value=6.2 Score=33.33 Aligned_cols=21 Identities=33% Similarity=0.349 Sum_probs=0.0
Q ss_pred hhcCCcEEEEcCCCChHHHHH
Q 013176 61 ALKGRDLIGIAETGSGKTLSY 81 (448)
Q Consensus 61 ~~~~~~~lv~~~tGsGKT~~~ 81 (448)
+..|+-+.+.+|.|+|||...
T Consensus 27 i~~Ge~~~iiG~nGsGKSTLl 47 (224)
T 2pcj_A 27 VKKGEFVSIIGASGSGKSTLL 47 (224)
T ss_dssp EETTCEEEEEECTTSCHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHH
No 498
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=52.05 E-value=9.5 Score=29.54 Aligned_cols=36 Identities=11% Similarity=0.212 Sum_probs=0.0
Q ss_pred cCCcEEEEecch--hHHHHHHHHHHhCCCCeEEEcCCC
Q 013176 271 DGSRILIFTETK--KGCDQVTRQLRMDGWPALSIHGDK 306 (448)
Q Consensus 271 ~~~k~lVf~~~~--~~~~~l~~~L~~~~~~~~~~~~~~ 306 (448)
.+++++|||.+- ..+...+..|+..|+++..+.|++
T Consensus 71 ~~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~ 108 (144)
T 3nhv_A 71 KEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGI 108 (144)
T ss_dssp TTSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CCCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcH
No 499
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=52.01 E-value=6.6 Score=34.01 Aligned_cols=21 Identities=33% Similarity=0.338 Sum_probs=0.0
Q ss_pred hhcCCcEEEEcCCCChHHHHH
Q 013176 61 ALKGRDLIGIAETGSGKTLSY 81 (448)
Q Consensus 61 ~~~~~~~lv~~~tGsGKT~~~ 81 (448)
+..|.-+.+.+|.|+|||...
T Consensus 30 i~~Ge~~~liG~nGsGKSTLl 50 (257)
T 1g6h_A 30 VNKGDVTLIIGPNGSGKSTLI 50 (257)
T ss_dssp EETTCEEEEECSTTSSHHHHH
T ss_pred EeCCCEEEEECCCCCCHHHHH
No 500
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=51.84 E-value=13 Score=42.27 Aligned_cols=39 Identities=21% Similarity=0.070 Sum_probs=0.0
Q ss_pred hhcCCcEEEEcCCCChHHHHHHHHHHHHhhcCCCccCCCCceEEEEc
Q 013176 61 ALKGRDLIGIAETGSGKTLSYLLPAFVHVSAQPRLVQGEGPIVLVLA 107 (448)
Q Consensus 61 ~~~~~~~lv~~~tGsGKT~~~~l~~l~~~~~~~~~~~~~~~~vlil~ 107 (448)
+..+.++++.+|+|+|||..+...+.+.... +.+++|+.
T Consensus 1078 i~~g~~vll~G~~GtGKT~la~~~~~ea~k~--------Ge~~~Fit 1116 (2050)
T 3cmu_A 1078 LPMGRIVEIYGPESSGKTTLTLQVIAAAQRE--------GKTCAFID 1116 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTT--------TCCEEEEC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHHHc--------CCeEEEEE
Done!