BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013178
(448 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1B37|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1H81|A Chain A, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|B Chain B, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|C Chain C, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H82|A Chain A, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|B Chain B, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|C Chain C, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H83|A Chain A, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|B Chain B, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|C Chain C, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H84|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H86|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
Length = 472
Score = 443 bits (1140), Expect = e-125, Method: Compositional matrix adjust.
Identities = 222/423 (52%), Positives = 287/423 (67%), Gaps = 11/423 (2%)
Query: 30 VIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNIGGHTIELGANWVNS-GG 88
VI+VGAGMSG AAK L EAG D +ILEA+ +GGR+HK N G +ELGANWV G
Sbjct: 7 VIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGINVELGANWVEGVNG 66
Query: 89 PKSSPSLQIAKK-IKLKTFYSDYANLTSNIYKQDGGLYQKHVVESAVRIAKTRDAFCTNL 147
K +P I +KL+ F SD+ L N+YK+DGG+Y + V+ + +A + + L
Sbjct: 67 GKMNPIWPIVNSTLKLRNFRSDFDYLAQNVYKEDGGVYDEDYVQKRIELADSVEEMGEKL 126
Query: 148 SKMLSSETTRDDDTSILGSQRLLKEVP---MTPLEMAIDYFFNDYEDAEPPRITSLKTTY 204
S L + DD SIL QRL + P TP++M +DY+ DYE AEPPR+TSL+ T
Sbjct: 127 SATLHASGR--DDMSILAMQRLNEHQPNGPATPVDMVVDYYKFDYEFAEPPRVTSLQNTV 184
Query: 205 PRNQLVDFGEDSYFVADPRGFESVVHSVAKQFL--SHRHQVIRDPRLKLNKVVRNISYSK 262
P DFG+D YFVAD RG+E+VV+ +A Q+L + I DPRL+LNKVVR I YS
Sbjct: 185 PLATFSDFGDDVYFVADQRGYEAVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYSP 244
Query: 263 DKVTVKTEDGSVYQANYAIVSVSIGVLQSDFIEFTPNLPLWKKLAINNFNMAIYTKIFMK 322
VTVKTED SVY A+Y +VS S+GVLQSD I+F P LP WK AI F+MA+YTKIF+K
Sbjct: 245 GGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFDMAVYTKIFLK 304
Query: 323 FPYKFWPTGPGTEFFIYAHERRGYFPIWQHLENEMPGSNILFVTVTDEESRRVERQSDEK 382
FP KFWP G G EFF+YA RRGY+ +WQ E + P +N+L VTVTDEESRR+E+QSDE+
Sbjct: 305 FPRKFWPEGKGREFFLYASSRRGYYGVWQEFEKQYPDANVLLVTVTDEESRRIEQQSDEQ 364
Query: 383 TKAEIMNNVLRKLF-GNKIPEPQSIFVPRWWSNRFFNGSYSNWPNGFTQQSYKELKVSIC 441
TKAEIM VLRK+F G +P+ I VPRWWS+RF+ G++SNWP G + Y +L+ +
Sbjct: 365 TKAEIMQ-VLRKMFPGKDVPDATDILVPRWWSDRFYKGTFSNWPVGVNRYEYDQLRAPVG 423
Query: 442 KLH 444
+++
Sbjct: 424 RVY 426
>pdb|3KPF|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KPF|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KU9|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3KU9|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3L1R|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
pdb|3L1R|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
Length = 478
Score = 441 bits (1135), Expect = e-124, Method: Compositional matrix adjust.
Identities = 221/423 (52%), Positives = 286/423 (67%), Gaps = 11/423 (2%)
Query: 30 VIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNIGGHTIELGANWVNS-GG 88
VI+VGAGMSG AAK L EAG D +ILEA+ +GGR+HK N G +ELGANWV G
Sbjct: 7 VIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGINVELGANWVEGVNG 66
Query: 89 PKSSPSLQIAKK-IKLKTFYSDYANLTSNIYKQDGGLYQKHVVESAVRIAKTRDAFCTNL 147
K +P I +KL+ F SD+ L N+YK+DGG+Y + V+ + +A + + L
Sbjct: 67 GKMNPIWPIVNSTLKLRNFRSDFDYLAQNVYKEDGGVYDEDYVQKRIELADSVEEMGEKL 126
Query: 148 SKMLSSETTRDDDTSILGSQRLLKEVP---MTPLEMAIDYFFNDYEDAEPPRITSLKTTY 204
S L + DD SIL QRL + P TP++M +DY+ DYE AEPPR+TSL+ T
Sbjct: 127 SATLHASGR--DDMSILAMQRLNEHQPNGPATPVDMVVDYYKFDYEFAEPPRVTSLQNTV 184
Query: 205 PRNQLVDFGEDSYFVADPRGFESVVHSVAKQFL--SHRHQVIRDPRLKLNKVVRNISYSK 262
P DFG+D YFVAD RG+E+VV+ +A Q+L + I DPRL+LNKVVR I YS
Sbjct: 185 PLATFSDFGDDVYFVADQRGYEAVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYSP 244
Query: 263 DKVTVKTEDGSVYQANYAIVSVSIGVLQSDFIEFTPNLPLWKKLAINNFNMAIYTKIFMK 322
VTVKTED SVY A+Y +VS S+GVLQSD I+F P LP WK AI F+MA+YT IF+K
Sbjct: 245 GGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFDMAVYTMIFLK 304
Query: 323 FPYKFWPTGPGTEFFIYAHERRGYFPIWQHLENEMPGSNILFVTVTDEESRRVERQSDEK 382
FP KFWP G G EFF+YA RRGY+ +WQ E + P +N+L VTVTDEESRR+E+QSDE+
Sbjct: 305 FPRKFWPEGKGREFFLYASSRRGYYGVWQEFEKQYPDANVLLVTVTDEESRRIEQQSDEQ 364
Query: 383 TKAEIMNNVLRKLF-GNKIPEPQSIFVPRWWSNRFFNGSYSNWPNGFTQQSYKELKVSIC 441
TKAEIM VLRK+F G +P+ I VPRWWS+RF+ G++SNWP G + Y +L+ +
Sbjct: 365 TKAEIMQ-VLRKMFPGKDVPDATDILVPRWWSDRFYKGTFSNWPVGVNRYEYDQLRAPVG 423
Query: 442 KLH 444
+++
Sbjct: 424 RVY 426
>pdb|4FWE|A Chain A, Native Structure Of Lsd2 /aof1/kdm1b In Spacegroup Of
C2221 At 2.13a
pdb|4FWF|A Chain A, Complex Structure Of Lsd2/aof1/kdm1b With H3k4 Mimic
pdb|4FWJ|A Chain A, Native Structure Of Lsd2/aof1/kdm1b In Spacegroup Of I222
At 2.9a
pdb|4FWJ|B Chain B, Native Structure Of Lsd2/aof1/kdm1b In Spacegroup Of I222
At 2.9a
Length = 796
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 99/190 (52%), Gaps = 7/190 (3%)
Query: 249 LKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSIGVLQSDFIEFTPNLPLWKKLAI 308
++L V+ I YS D+V V T DG+ Y A +V+V + +LQ I+F P L K AI
Sbjct: 566 IQLKSPVQCIDYSGDEVQVTTTDGTGYSAQKVLVTVPLALLQKGAIQFNPPLSEKKMKAI 625
Query: 309 NNFNMAIYTKIFMKFPYKFWPTG-PGTEFFIY---AHERRGYFPIWQHLENEMPGSNILF 364
N+ I KI ++FPY+FW + G +FF + + +RG F ++ ++ + S +L
Sbjct: 626 NSLGAGIIEKIALQFPYRFWDSKVQGADFFGHVPPSASKRGLFAVFYDMDPQKKHS-VLM 684
Query: 365 VTVTDEESRRVERQSDEKTKAEIMNNVLRKLFGNK-IPEPQSIFVPRWWSNRFFNGSYSN 423
+ E V D++ + M LR+LF + +P+P FV RW ++ + +YS
Sbjct: 685 SVIAGEAVASVRTLDDKQVLQQCMAT-LRELFKEQEVPDPTKYFVTRWSTDPWIQMAYSF 743
Query: 424 WPNGFTQQSY 433
G + ++Y
Sbjct: 744 VKTGGSGEAY 753
>pdb|4GUR|A Chain A, Crystal Structure Of Lsd2-npac With H3 In Space Group P21
pdb|4GUS|A Chain A, Crystal Structure Of Lsd2-npac With H3 In Space Group
P3221
pdb|4GUT|A Chain A, Crystal Structure Of Lsd2-npac
pdb|4GUU|A Chain A, Crystal Structure Of Lsd2-npac With Tranylcypromine
pdb|4GU0|A Chain A, Crystal Structure Of Lsd2 With H3
pdb|4GU0|B Chain B, Crystal Structure Of Lsd2 With H3
pdb|4GU0|C Chain C, Crystal Structure Of Lsd2 With H3
pdb|4GU0|D Chain D, Crystal Structure Of Lsd2 With H3
pdb|4HSU|A Chain A, Crystal Structure Of Lsd2-npac With H3(1-26)in Space Group
P21
Length = 776
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 99/190 (52%), Gaps = 7/190 (3%)
Query: 249 LKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSIGVLQSDFIEFTPNLPLWKKLAI 308
++L V+ I YS D+V V T DG+ Y A +V+V + +LQ I+F P L K AI
Sbjct: 546 IQLKSPVQCIDYSGDEVQVTTTDGTGYSAQKVLVTVPLALLQKGAIQFNPPLSEKKMKAI 605
Query: 309 NNFNMAIYTKIFMKFPYKFWPTG-PGTEFFIY---AHERRGYFPIWQHLENEMPGSNILF 364
N+ I KI ++FPY+FW + G +FF + + +RG F ++ ++ + S +L
Sbjct: 606 NSLGAGIIEKIALQFPYRFWDSKVQGADFFGHVPPSASKRGLFAVFYDMDPQKKHS-VLM 664
Query: 365 VTVTDEESRRVERQSDEKTKAEIMNNVLRKLFGNK-IPEPQSIFVPRWWSNRFFNGSYSN 423
+ E V D++ + M LR+LF + +P+P FV RW ++ + +YS
Sbjct: 665 SVIAGEAVASVRTLDDKQVLQQCMAT-LRELFKEQEVPDPTKYFVTRWSTDPWIQMAYSF 723
Query: 424 WPNGFTQQSY 433
G + ++Y
Sbjct: 724 VKTGGSGEAY 733
>pdb|4GU1|A Chain A, Crystal Structure Of Lsd2
pdb|4GU1|B Chain B, Crystal Structure Of Lsd2
Length = 784
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 99/190 (52%), Gaps = 7/190 (3%)
Query: 249 LKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSIGVLQSDFIEFTPNLPLWKKLAI 308
++L V+ I YS D+V V T DG+ Y A +V+V + +LQ I+F P L K AI
Sbjct: 554 IQLKSPVQCIDYSGDEVQVTTTDGTGYSAQKVLVTVPLALLQKGAIQFNPPLSEKKMKAI 613
Query: 309 NNFNMAIYTKIFMKFPYKFWPTG-PGTEFFIY---AHERRGYFPIWQHLENEMPGSNILF 364
N+ I KI ++FPY+FW + G +FF + + +RG F ++ ++ + S +L
Sbjct: 614 NSLGAGIIEKIALQFPYRFWDSKVQGADFFGHVPPSASKRGLFAVFYDMDPQKKHS-VLM 672
Query: 365 VTVTDEESRRVERQSDEKTKAEIMNNVLRKLFGNK-IPEPQSIFVPRWWSNRFFNGSYSN 423
+ E V D++ + M LR+LF + +P+P FV RW ++ + +YS
Sbjct: 673 SVIAGEAVASVRTLDDKQVLQQCMAT-LRELFKEQEVPDPTKYFVTRWSTDPWIQMAYSF 731
Query: 424 WPNGFTQQSY 433
G + ++Y
Sbjct: 732 VKTGGSGEAY 741
>pdb|4GDP|A Chain A, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|B Chain B, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|C Chain C, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|D Chain D, Yeast Polyamine Oxidase Fms1, N195a Mutant
Length = 516
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 90/378 (23%), Positives = 155/378 (41%), Gaps = 52/378 (13%)
Query: 23 TSPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHK-GNIGGHTIELGA 81
SP VII+GAG++G AA TL + G +D ++LEA RVGGRL G ++GA
Sbjct: 4 VSPAKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKYDIGA 63
Query: 82 NWVNSGGPKSSPSLQIAKKIKLKTFYSDYANLTSNIYKQDGGLYQKHVVESAVRIAKTRD 141
+W + ++P ++ L + + ++ D +Y + E R+ ++
Sbjct: 64 SWHHD--TLTNPLFLEEAQLSLNDGRTRF------VFDDDNFIY---IDEERGRVDHDKE 112
Query: 142 AFCTNLSKMLSSETTRDDDTSILGSQRLLKEVPMTPLEMAIDYFFNDYEDAEPPRITSLK 201
+ +S + + S ++ M L + ND P L+
Sbjct: 113 LLLEIVDNEMSKFAELEFHQHLGVSDCSFFQLVMKYLLQRRQFLTNDQIRYLPQLCRYLE 172
Query: 202 TTYPRNQLVDFGEDSYFVADPRG-----FESVVHSVAKQFLSHRHQVIRDPR--LKLNKV 254
+ + + +D+YF R ++SVV +A+ F P+ LKL+
Sbjct: 173 LWHGLDWKLLSAKDTYFGHQGRAAFALNYDSVVQRIAQSF----------PQNWLKLSCE 222
Query: 255 VRNISYSKDK-VTVKTEDGSVYQANYAIVSVSIGVLQSDF---------IEFTPNLPLWK 304
V++I+ K VTV EDG+VY A+Y I++V VL IEF P L
Sbjct: 223 VKSITREPSKNVTVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVI 282
Query: 305 KLAINNFNMAIYTKIFMKFPYKFWPTGPGTEFFIYAHERRGYFPIWQHLENEMPGSNILF 364
+ A + + K+ +F W + ++ A+ + I ++ EN
Sbjct: 283 QDAFDKIHFGALGKVIFEFEECCW-SNESSKIVTLANSTNEFVEIVRNAEN--------- 332
Query: 365 VTVTDEESRRVERQSDEK 382
DE +ER+ +K
Sbjct: 333 ---LDELDSMLEREDSQK 347
>pdb|1YY5|A Chain A, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1YY5|B Chain B, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|A Chain A, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|B Chain B, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|C Chain C, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|D Chain D, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
Length = 513
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 90/378 (23%), Positives = 155/378 (41%), Gaps = 52/378 (13%)
Query: 23 TSPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHK-GNIGGHTIELGA 81
SP VII+GAG++G AA TL + G +D ++LEA RVGGRL G ++GA
Sbjct: 4 VSPAKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKYDIGA 63
Query: 82 NWVNSGGPKSSPSLQIAKKIKLKTFYSDYANLTSNIYKQDGGLYQKHVVESAVRIAKTRD 141
+W + ++P ++ L + + ++ D +Y + E R+ ++
Sbjct: 64 SWHHD--TLTNPLFLEEAQLSLNDGRTRF------VFDDDNFIY---IDEERGRVDHDKE 112
Query: 142 AFCTNLSKMLSSETTRDDDTSILGSQRLLKEVPMTPLEMAIDYFFNDYEDAEPPRITSLK 201
+ +S + + S ++ M L + ND P L+
Sbjct: 113 LLLEIVDNEMSKFAELEFHQHLGVSDCSFFQLVMKYLLQRRQFLTNDQIRYLPQLCRYLE 172
Query: 202 TTYPRNQLVDFGEDSYFVADPR-----GFESVVHSVAKQFLSHRHQVIRDPR--LKLNKV 254
+ + + +D+YF R ++SVV +A+ F P+ LKL+
Sbjct: 173 LWHGLDWKLLSAKDTYFGHQGRNAFALNYDSVVQRIAQSF----------PQNWLKLSCE 222
Query: 255 VRNISYSKDK-VTVKTEDGSVYQANYAIVSVSIGVLQSDF---------IEFTPNLPLWK 304
V++I+ K VTV EDG+VY A+Y I++V VL IEF P L
Sbjct: 223 VKSITREPSKNVTVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVI 282
Query: 305 KLAINNFNMAIYTKIFMKFPYKFWPTGPGTEFFIYAHERRGYFPIWQHLENEMPGSNILF 364
+ A + + K+ +F W + ++ A+ + I ++ EN
Sbjct: 283 QDAFDKIHFGALGKVIFEFEECCW-SNESSKIVTLANSTNEFVEIVRNAEN--------- 332
Query: 365 VTVTDEESRRVERQSDEK 382
DE +ER+ +K
Sbjct: 333 ---LDELDSMLEREDSQK 347
>pdb|1Z6L|A Chain A, Crystal Structure Of Fms1 In Complex With Its Substrate
pdb|1Z6L|B Chain B, Crystal Structure Of Fms1 In Complex With Its Substrate
pdb|3BI2|A Chain A, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI2|B Chain B, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI4|A Chain A, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI4|B Chain B, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI5|A Chain A, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI5|B Chain B, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BNM|B Chain B, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3r,3'r)-
Methylated Spermine
pdb|3BNM|A Chain A, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3r,3'r)-
Methylated Spermine
pdb|3BNU|B Chain B, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3s,3's)-
Methylated Spermine
pdb|3BNU|A Chain A, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3s,3's)-
Methylated Spermine
pdb|3CN8|B Chain B, Crystal Structure Of Fms1 In Complex With Spermidine
pdb|3CN8|A Chain A, Crystal Structure Of Fms1 In Complex With Spermidine
pdb|3CND|B Chain B, Crystal Structure Of Fms1 In Complex With N1-Acspermine
pdb|3CND|A Chain A, Crystal Structure Of Fms1 In Complex With N1-Acspermine
pdb|3CNP|B Chain B, Crystal Structure Of Fms1 In Complex With
S-n1-acmespermidine
pdb|3CNP|A Chain A, Crystal Structure Of Fms1 In Complex With
S-n1-acmespermidine
pdb|3CNS|A Chain A, Crystal Structure Of Fms1 In Complex With
S-Bz-Mespermidine
pdb|3CNS|B Chain B, Crystal Structure Of Fms1 In Complex With
S-Bz-Mespermidine
pdb|3CNT|B Chain B, Crystal Structure Of Fms1 In Complex With
R-Bz-Mespermidine
pdb|3CNT|A Chain A, Crystal Structure Of Fms1 In Complex With
R-Bz-Mespermidine
Length = 516
Score = 78.6 bits (192), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 90/378 (23%), Positives = 155/378 (41%), Gaps = 52/378 (13%)
Query: 23 TSPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHK-GNIGGHTIELGA 81
SP VII+GAG++G AA TL + G +D ++LEA RVGGRL G ++GA
Sbjct: 4 VSPAKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKYDIGA 63
Query: 82 NWVNSGGPKSSPSLQIAKKIKLKTFYSDYANLTSNIYKQDGGLYQKHVVESAVRIAKTRD 141
+W + ++P ++ L + + ++ D +Y + E R+ ++
Sbjct: 64 SWHHD--TLTNPLFLEEAQLSLNDGRTRF------VFDDDNFIY---IDEERGRVDHDKE 112
Query: 142 AFCTNLSKMLSSETTRDDDTSILGSQRLLKEVPMTPLEMAIDYFFNDYEDAEPPRITSLK 201
+ +S + + S ++ M L + ND P L+
Sbjct: 113 LLLEIVDNEMSKFAELEFHQHLGVSDCSFFQLVMKYLLQRRQFLTNDQIRYLPQLCRYLE 172
Query: 202 TTYPRNQLVDFGEDSYFVADPR-----GFESVVHSVAKQFLSHRHQVIRDPR--LKLNKV 254
+ + + +D+YF R ++SVV +A+ F P+ LKL+
Sbjct: 173 LWHGLDWKLLSAKDTYFGHQGRNAFALNYDSVVQRIAQSF----------PQNWLKLSCE 222
Query: 255 VRNISYSKDK-VTVKTEDGSVYQANYAIVSVSIGVLQSDF---------IEFTPNLPLWK 304
V++I+ K VTV EDG+VY A+Y I++V VL IEF P L
Sbjct: 223 VKSITREPSKNVTVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVI 282
Query: 305 KLAINNFNMAIYTKIFMKFPYKFWPTGPGTEFFIYAHERRGYFPIWQHLENEMPGSNILF 364
+ A + + K+ +F W + ++ A+ + I ++ EN
Sbjct: 283 QDAFDKIHFGALGKVIFEFEECCW-SNESSKIVTLANSTNEFVEIVRNAEN--------- 332
Query: 365 VTVTDEESRRVERQSDEK 382
DE +ER+ +K
Sbjct: 333 ---LDELDSMLEREDSQK 347
>pdb|4ECH|A Chain A, Yeast Polyamine Oxidase Fms1, H67q Mutant
pdb|4ECH|B Chain B, Yeast Polyamine Oxidase Fms1, H67q Mutant
Length = 516
Score = 78.2 bits (191), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 90/378 (23%), Positives = 154/378 (40%), Gaps = 52/378 (13%)
Query: 23 TSPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHK-GNIGGHTIELGA 81
SP VII+GAG++G AA TL + G +D ++LEA RVGGRL G ++GA
Sbjct: 4 VSPAKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKYDIGA 63
Query: 82 NWVNSGGPKSSPSLQIAKKIKLKTFYSDYANLTSNIYKQDGGLYQKHVVESAVRIAKTRD 141
+W ++P ++ L + + ++ D +Y + E R+ ++
Sbjct: 64 SW--HQDTLTNPLFLEEAQLSLNDGRTRF------VFDDDNFIY---IDEERGRVDHDKE 112
Query: 142 AFCTNLSKMLSSETTRDDDTSILGSQRLLKEVPMTPLEMAIDYFFNDYEDAEPPRITSLK 201
+ +S + + S ++ M L + ND P L+
Sbjct: 113 LLLEIVDNEMSKFAELEFHQHLGVSDCSFFQLVMKYLLQRRQFLTNDQIRYLPQLCRYLE 172
Query: 202 TTYPRNQLVDFGEDSYFVADPR-----GFESVVHSVAKQFLSHRHQVIRDPR--LKLNKV 254
+ + + +D+YF R ++SVV +A+ F P+ LKL+
Sbjct: 173 LWHGLDWKLLSAKDTYFGHQGRNAFALNYDSVVQRIAQSF----------PQNWLKLSCE 222
Query: 255 VRNISYSKDK-VTVKTEDGSVYQANYAIVSVSIGVLQSDF---------IEFTPNLPLWK 304
V++I+ K VTV EDG+VY A+Y I++V VL IEF P L
Sbjct: 223 VKSITREPSKNVTVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVI 282
Query: 305 KLAINNFNMAIYTKIFMKFPYKFWPTGPGTEFFIYAHERRGYFPIWQHLENEMPGSNILF 364
+ A + + K+ +F W + ++ A+ + I ++ EN
Sbjct: 283 QDAFDKIHFGALGKVIFEFEECCW-SNESSKIVTLANSTNEFVEIVRNAEN--------- 332
Query: 365 VTVTDEESRRVERQSDEK 382
DE +ER+ +K
Sbjct: 333 ---LDELDSMLEREDSQK 347
>pdb|2YG6|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: P15i-A394c Double Mutant
pdb|2YG6|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: P15i-A394c Double Mutant
Length = 453
Score = 75.1 bits (183), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 105/424 (24%), Positives = 168/424 (39%), Gaps = 66/424 (15%)
Query: 30 VIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNIGGHTIELGANWVNSGGP 89
V IVGAG+SG AA L +AG ++EA RVGGR I G +E+G WV+ P
Sbjct: 8 VAIVGAGISGLAAATALRKAGLS-VAVIEARDRVGGRTWTDTIDGAVLEIGGQWVS---P 63
Query: 90 KSSPSLQIAKKIKLKTFYSDYANLTSNIYKQDGGLYQKHVVESAVRIAKTRDAFCTNLSK 149
+ + + ++ LKTF Y++ +Y + + R T D+F TN
Sbjct: 64 DQTALISLLDELGLKTFER---------YREGESVY---ISSAGERTRYTGDSFPTN--- 108
Query: 150 MLSSETTRD------DDTSILGSQRLLKEVPMTPLEMAID------YFFNDYEDAEPPR- 196
ETT+ D+ L +Q +E PL +D + N +DAE
Sbjct: 109 ----ETTKKEMDRLIDEMDDLAAQIGAEEPWAHPLARDLDTVSFKQWLINQSDDAEARDN 164
Query: 197 ----ITSLKTTYPRNQLVDFGEDSYFVADPRGFESVVHS---VAKQFLSHRHQV-IR--- 245
I T P + + A F +V + K+ + QV IR
Sbjct: 165 IGLFIAGGMLTKPAHSFSAL-QAVLMAASAGSFSHLVDEDFILDKRVIGGMQQVSIRMAE 223
Query: 246 --DPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSIGVLQSDFIEFTPNLPLW 303
+ LN VR + +++ TV + +A+ I++V + I + P LP
Sbjct: 224 ALGDDVFLNAPVRTVKWNESGATVLADGDIRVEASRVILAVPPNLYSR--ISYDPPLPRR 281
Query: 304 KKLAINNFNMAIYTKIFMKFPYKFWPTG--PGTEFFIYAHERRGYFPIWQHL---ENEMP 358
+ + ++ + K+ + FW GT F G + Q + N
Sbjct: 282 QHQMHQHQSLGLVIKVHAVYETPFWREDGLSGTGF--------GASEVVQEVYDNTNHED 333
Query: 359 GSNILFVTVTDEESRRVERQSDEKTKAEIMNNVLRKLFGNKIPEPQSIFVPRWWSNRFFN 418
L V+DE++ + S E+ KA I+ ++ R L G K EP + W S +
Sbjct: 334 DRGTLVAFVSDEKADAMFELSAEERKATILASLARYL-GPKAEEPVVYYESDWGSEEWTR 392
Query: 419 GSYS 422
G Y+
Sbjct: 393 GCYA 396
>pdb|1RSG|A Chain A, Crystal Structure Of The Polyamine Oxidase Fms1 From Yeast
pdb|1RSG|B Chain B, Crystal Structure Of The Polyamine Oxidase Fms1 From Yeast
Length = 516
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 89/378 (23%), Positives = 153/378 (40%), Gaps = 52/378 (13%)
Query: 23 TSPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHK-GNIGGHTIELGA 81
SP VII+GAG++G AA TL + G +D ++LEA RVGGRL G ++GA
Sbjct: 4 VSPAKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKYDIGA 63
Query: 82 NWVNSGGPKSSPSLQIAKKIKLKTFYSDYANLTSNIYKQDGGLYQKHVVESAVRIAKTRD 141
+W + ++P ++ L + + ++ D +Y + E R+ ++
Sbjct: 64 SWHHD--TLTNPLFLEEAQLSLNDGRTRF------VFDDDNFIY---IDEERGRVDHDKE 112
Query: 142 AFCTNLSKMLSSETTRDDDTSILGSQRLLKEVPMTPLEMAIDYFFNDYEDAEPPRITSLK 201
+ S + + S ++ L + ND P L+
Sbjct: 113 LLLEIVDNEXSKFAELEFHQHLGVSDCSFFQLVXKYLLQRRQFLTNDQIRYLPQLCRYLE 172
Query: 202 TTYPRNQLVDFGEDSYFVADPR-----GFESVVHSVAKQFLSHRHQVIRDPR--LKLNKV 254
+ + + +D+YF R ++SVV +A+ F P+ LKL+
Sbjct: 173 LWHGLDWKLLSAKDTYFGHQGRNAFALNYDSVVQRIAQSF----------PQNWLKLSCE 222
Query: 255 VRNISYSKDK-VTVKTEDGSVYQANYAIVSVSIGVLQSDF---------IEFTPNLPLWK 304
V++I+ K VTV EDG+VY A+Y I++V VL IEF P L
Sbjct: 223 VKSITREPSKNVTVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVI 282
Query: 305 KLAINNFNMAIYTKIFMKFPYKFWPTGPGTEFFIYAHERRGYFPIWQHLENEMPGSNILF 364
+ A + + K+ +F W + ++ A+ + I ++ EN
Sbjct: 283 QDAFDKIHFGALGKVIFEFEECCW-SNESSKIVTLANSTNEFVEIVRNAEN--------- 332
Query: 365 VTVTDEESRRVERQSDEK 382
DE +ER+ +K
Sbjct: 333 ---LDELDSXLEREDSQK 347
>pdb|2YG3|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Enzyme
pdb|2YG3|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Enzyme
pdb|2YG4|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Bound To Putrescine
pdb|2YG4|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Bound To Putrescine
Length = 453
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 105/424 (24%), Positives = 168/424 (39%), Gaps = 66/424 (15%)
Query: 30 VIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNIGGHTIELGANWVNSGGP 89
V IVGAG SG AA L +AG ++EA RVGGR I G +E+G WV+ P
Sbjct: 8 VAIVGAGPSGLAAATALRKAGLS-VAVIEARDRVGGRTWTDTIDGAVLEIGGQWVS---P 63
Query: 90 KSSPSLQIAKKIKLKTFYSDYANLTSNIYKQDGGLYQKHVVESAVRIAKTRDAFCTNLSK 149
+ + + ++ LKTF Y++ +Y + + R T D+F TN
Sbjct: 64 DQTALISLLDELGLKTFER---------YREGESVY---ISSAGERTRYTGDSFPTN--- 108
Query: 150 MLSSETTRD------DDTSILGSQRLLKEVPMTPLEMAID------YFFNDYEDAEPPR- 196
ETT+ D+ L +Q +E PL +D + N +DAE
Sbjct: 109 ----ETTKKEMDRLIDEMDDLAAQIGAEEPWAHPLARDLDTVSFKQWLINQSDDAEARDN 164
Query: 197 ----ITSLKTTYPRNQLVDFGEDSYFVADPRGFESVVHS---VAKQFLSHRHQV-IR--- 245
I T P + + A F +V + K+ + QV IR
Sbjct: 165 IGLFIAGGMLTKPAHSFSAL-QAVLMAASAGSFSHLVDEDFILDKRVIGGMQQVSIRMAE 223
Query: 246 --DPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSIGVLQSDFIEFTPNLPLW 303
+ LN VR + +++ TV + +A+ I++V + I + P LP
Sbjct: 224 ALGDDVFLNAPVRTVKWNESGATVLADGDIRVEASRVILAVPPNLYSR--ISYDPPLPRR 281
Query: 304 KKLAINNFNMAIYTKIFMKFPYKFWPTG--PGTEFFIYAHERRGYFPIWQHL---ENEMP 358
+ + ++ + K+ + FW GT F G + Q + N
Sbjct: 282 QHQMHQHQSLGLVIKVHAVYETPFWREDGLSGTGF--------GASEVVQEVYDNTNHED 333
Query: 359 GSNILFVTVTDEESRRVERQSDEKTKAEIMNNVLRKLFGNKIPEPQSIFVPRWWSNRFFN 418
L V+DE++ + S E+ KA I+ ++ R L G K EP + W S +
Sbjct: 334 DRGTLVAFVSDEKADAMFELSAEERKATILASLARYL-GPKAEEPVVYYESDWGSEEWTR 392
Query: 419 GSYS 422
G+Y+
Sbjct: 393 GAYA 396
>pdb|2YG5|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c Mutant
Length = 453
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 105/424 (24%), Positives = 167/424 (39%), Gaps = 66/424 (15%)
Query: 30 VIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNIGGHTIELGANWVNSGGP 89
V IVGAG SG AA L +AG ++EA RVGGR I G +E+G WV+ P
Sbjct: 8 VAIVGAGPSGLAAATALRKAGLS-VAVIEARDRVGGRTWTDTIDGAVLEIGGQWVS---P 63
Query: 90 KSSPSLQIAKKIKLKTFYSDYANLTSNIYKQDGGLYQKHVVESAVRIAKTRDAFCTNLSK 149
+ + + ++ LKTF Y++ +Y + + R T D+F TN
Sbjct: 64 DQTALISLLDELGLKTFER---------YREGESVY---ISSAGERTRYTGDSFPTN--- 108
Query: 150 MLSSETTRD------DDTSILGSQRLLKEVPMTPLEMAID------YFFNDYEDAEPPR- 196
ETT+ D+ L +Q +E PL +D + N +DAE
Sbjct: 109 ----ETTKKEMDRLIDEMDDLAAQIGAEEPWAHPLARDLDTVSFKQWLINQSDDAEARDN 164
Query: 197 ----ITSLKTTYPRNQLVDFGEDSYFVADPRGFESVVHS---VAKQFLSHRHQV-IR--- 245
I T P + + A F +V + K+ + QV IR
Sbjct: 165 IGLFIAGGMLTKPAHSFSAL-QAVLMAASAGSFSHLVDEDFILDKRVIGGMQQVSIRMAE 223
Query: 246 --DPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSIGVLQSDFIEFTPNLPLW 303
+ LN VR + +++ TV + +A+ I++V + I + P LP
Sbjct: 224 ALGDDVFLNAPVRTVKWNESGATVLADGDIRVEASRVILAVPPNLYSR--ISYDPPLPRR 281
Query: 304 KKLAINNFNMAIYTKIFMKFPYKFWPTG--PGTEFFIYAHERRGYFPIWQHL---ENEMP 358
+ + ++ + K+ + FW GT F G + Q + N
Sbjct: 282 QHQMHQHQSLGLVIKVHAVYETPFWREDGLSGTGF--------GASEVVQEVYDNTNHED 333
Query: 359 GSNILFVTVTDEESRRVERQSDEKTKAEIMNNVLRKLFGNKIPEPQSIFVPRWWSNRFFN 418
L V+DE++ + S E+ KA I+ ++ R L G K EP + W S +
Sbjct: 334 DRGTLVAFVSDEKADAMFELSAEERKATILASLARYL-GPKAEEPVVYYESDWGSEEWTR 392
Query: 419 GSYS 422
G Y+
Sbjct: 393 GCYA 396
>pdb|2YG7|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c-A396t-Q431g Triple Mutant
pdb|2YG7|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c-A396t-Q431g Triple Mutant
Length = 453
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 105/424 (24%), Positives = 167/424 (39%), Gaps = 66/424 (15%)
Query: 30 VIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNIGGHTIELGANWVNSGGP 89
V IVGAG SG AA L +AG ++EA RVGGR I G +E+G WV+ P
Sbjct: 8 VAIVGAGPSGLAAATALRKAGLS-VAVIEARDRVGGRTWTDTIDGAVLEIGGQWVS---P 63
Query: 90 KSSPSLQIAKKIKLKTFYSDYANLTSNIYKQDGGLYQKHVVESAVRIAKTRDAFCTNLSK 149
+ + + ++ LKTF Y++ +Y + + R T D+F TN
Sbjct: 64 DQTALISLLDELGLKTFER---------YREGESVY---ISSAGERTRYTGDSFPTN--- 108
Query: 150 MLSSETTRD------DDTSILGSQRLLKEVPMTPLEMAID------YFFNDYEDAEPPR- 196
ETT+ D+ L +Q +E PL +D + N +DAE
Sbjct: 109 ----ETTKKEMDRLIDEMDDLAAQIGAEEPWAHPLARDLDTVSFKQWLINQSDDAEARDN 164
Query: 197 ----ITSLKTTYPRNQLVDFGEDSYFVADPRGFESVVHS---VAKQFLSHRHQV-IR--- 245
I T P + + A F +V + K+ + QV IR
Sbjct: 165 IGLFIAGGMLTKPAHSFSAL-QAVLMAASAGSFSHLVDEDFILDKRVIGGMQQVSIRMAE 223
Query: 246 --DPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSIGVLQSDFIEFTPNLPLW 303
+ LN VR + +++ TV + +A+ I++V + I + P LP
Sbjct: 224 ALGDDVFLNAPVRTVKWNESGATVLADGDIRVEASRVILAVPPNLYSR--ISYDPPLPRR 281
Query: 304 KKLAINNFNMAIYTKIFMKFPYKFWPTG--PGTEFFIYAHERRGYFPIWQHL---ENEMP 358
+ + ++ + K+ + FW GT F G + Q + N
Sbjct: 282 QHQMHQHQSLGLVIKVHAVYETPFWREDGLSGTGF--------GASEVVQEVYDNTNHED 333
Query: 359 GSNILFVTVTDEESRRVERQSDEKTKAEIMNNVLRKLFGNKIPEPQSIFVPRWWSNRFFN 418
L V+DE++ + S E+ KA I+ ++ R L G K EP + W S +
Sbjct: 334 DRGTLVAFVSDEKADAMFELSAEERKATILASLARYL-GPKAEEPVVYYESDWGSEEWTR 392
Query: 419 GSYS 422
G Y+
Sbjct: 393 GCYT 396
>pdb|2XAF|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (+)-Cis-2-Phenylcyclopropyl-1-Amine
pdb|2XAG|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (-)-Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAH|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With (+)-
Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAJ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
(-)-Trans- 2-Phenylcyclopropyl-1-Amine
pdb|2XAQ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2584, 13b)
pdb|2XAS|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2580, 14e)
Length = 852
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 86/198 (43%), Gaps = 21/198 (10%)
Query: 249 LKLNKVVRNISYSK---DKVTVKTEDGS---VYQANYAIVSVSIGVL--QSDFIEFTPNL 300
+KLN VR + Y+ + + V T S +Y+ + + ++ +GVL Q ++F P L
Sbjct: 584 IKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPL 643
Query: 301 PLWKKLAINNFNMAIYTKIFMKFPYKFWPTGPGTEFFIY----AHERRGYFPIWQHLENE 356
P WK A+ K+ + F FW P F + R F W +
Sbjct: 644 PEWKTSAVQRMGFGNLNKVVLCFDRVFW--DPSVNLFGHVGSTTASRGELFLFWNLYK-- 699
Query: 357 MPGSNILFVTVTDEESRRVERQSDEKTKAEIMNNVLRKLFGNK-IPEPQSIFVPRWWSNR 415
+ IL V E + +E SD+ + +L+ +FG+ +P+P+ V RW ++
Sbjct: 700 ---APILLALVAGEAAGIMENISDDVIVGRCL-AILKGIFGSSAVPQPKETVVSRWRADP 755
Query: 416 FFNGSYSNWPNGFTQQSY 433
+ GSYS G + Y
Sbjct: 756 WARGSYSYVAAGSSGNDY 773
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNIGGHTIELGANWVNS 86
+ VII+G+G+SG AA+ L+ G D +LEA RVGGR+ G + +LGA V
Sbjct: 278 TGKVIIIGSGVSGLAAARQLQSFGM-DVTLLEARDRVGGRVATFRKGNYVADLGAMVVTG 336
Query: 87 GGPKSSPSLQIAKKIKLK 104
G +P ++K++ ++
Sbjct: 337 LG--GNPMAVVSKQVNME 352
>pdb|2HKO|A Chain A, Crystal Structure Of Lsd1
Length = 664
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 86/198 (43%), Gaps = 21/198 (10%)
Query: 249 LKLNKVVRNISYSK---DKVTVKTEDGS---VYQANYAIVSVSIGVL--QSDFIEFTPNL 300
+KLN VR + Y+ + + V T S +Y+ + + ++ +GVL Q ++F P L
Sbjct: 413 IKLNTAVRQVQYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPL 472
Query: 301 PLWKKLAINNFNMAIYTKIFMKFPYKFWPTGPGTEFFIYA----HERRGYFPIWQHLENE 356
P WK A+ K+ + F FW P F + R F W
Sbjct: 473 PEWKTSAVQRMGFGNLNKVVLCFDRVFW--DPSVNLFGHVGSTTASRGELFLFWN----- 525
Query: 357 MPGSNILFVTVTDEESRRVERQSDEKTKAEIMNNVLRKLFGNK-IPEPQSIFVPRWWSNR 415
+ + IL V E + +E SD+ + +L+ +FG+ +P+P+ V RW ++
Sbjct: 526 LYKAPILLALVAGEAAGIMENISDDVIVGRCL-AILKGIFGSSAVPQPKETVVSRWRADP 584
Query: 416 FFNGSYSNWPNGFTQQSY 433
+ GSYS G + Y
Sbjct: 585 WARGSYSYVAAGSSGNDY 602
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNIGGHTIELGANWVNS 86
+ VII+G+G+SG AA+ L+ G D +LEA RVGGR+ G + +LGA V
Sbjct: 107 TGKVIIIGSGVSGLAAARQLQSFGM-DVTLLEARDRVGGRVATFRKGNYVADLGAMVVTG 165
Query: 87 GGPKSSPSLQIAKKIKLK 104
G +P ++K++ ++
Sbjct: 166 LG--GNPMAVVSKQVNME 181
>pdb|2V1D|A Chain A, Structural Basis Of Lsd1-Corest Selectivity In Histone H3
Recognition
pdb|2Y48|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A N-
Terminal Snail Peptide
Length = 730
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 86/198 (43%), Gaps = 21/198 (10%)
Query: 249 LKLNKVVRNISYSK---DKVTVKTEDGS---VYQANYAIVSVSIGVL--QSDFIEFTPNL 300
+KLN VR + Y+ + + V T S +Y+ + + ++ +GVL Q ++F P L
Sbjct: 462 IKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPL 521
Query: 301 PLWKKLAINNFNMAIYTKIFMKFPYKFWPTGPGTEFFIYA----HERRGYFPIWQHLENE 356
P WK A+ K+ + F FW P F + R F W
Sbjct: 522 PEWKTSAVQRMGFGNLNKVVLCFDRVFW--DPSVNLFGHVGSTTASRGELFLFWN----- 574
Query: 357 MPGSNILFVTVTDEESRRVERQSDEKTKAEIMNNVLRKLFGNK-IPEPQSIFVPRWWSNR 415
+ + IL V E + +E SD+ + +L+ +FG+ +P+P+ V RW ++
Sbjct: 575 LYKAPILLALVAGEAAGIMENISDDVIVGRCL-AILKGIFGSSAVPQPKETVVSRWRADP 633
Query: 416 FFNGSYSNWPNGFTQQSY 433
+ GSYS G + Y
Sbjct: 634 WARGSYSYVAAGSSGNDY 651
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNIGGHTIELGANWVNS 86
+ VII+G+G+SG AA+ L+ G D +LEA RVGGR+ G + +LGA V
Sbjct: 156 TGKVIIIGSGVSGLAAARQLQSFGM-DVTLLEARDRVGGRVATFRKGNYVADLGAMVVTG 214
Query: 87 GGPKSSPSLQIAKKIKLK 104
G +P ++K++ ++
Sbjct: 215 LG--GNPMAVVSKQVNME 230
>pdb|2H94|A Chain A, Crystal Structure And Mechanism Of Human Lysine-Specific
Demethylase-1
Length = 664
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 86/198 (43%), Gaps = 21/198 (10%)
Query: 249 LKLNKVVRNISYSK---DKVTVKTEDGS---VYQANYAIVSVSIGVL--QSDFIEFTPNL 300
+KLN VR + Y+ + + V T S +Y+ + + ++ +GVL Q ++F P L
Sbjct: 413 IKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPL 472
Query: 301 PLWKKLAINNFNMAIYTKIFMKFPYKFWPTGPGTEFFIYA----HERRGYFPIWQHLENE 356
P WK A+ K+ + F FW P F + R F W
Sbjct: 473 PEWKTSAVQRMGFGNLNKVVLCFDRVFW--DPSVNLFGHVGSTTASRGELFLFWN----- 525
Query: 357 MPGSNILFVTVTDEESRRVERQSDEKTKAEIMNNVLRKLFGNK-IPEPQSIFVPRWWSNR 415
+ + IL V E + +E SD+ + +L+ +FG+ +P+P+ V RW ++
Sbjct: 526 LYKAPILLALVAGEAAGIMENISDDVIVGRCL-AILKGIFGSSAVPQPKETVVSRWRADP 584
Query: 416 FFNGSYSNWPNGFTQQSY 433
+ GSYS G + Y
Sbjct: 585 WARGSYSYVAAGSSGNDY 602
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNIGGHTIELGANWVNS 86
+ VII+G+G+SG AA+ L+ G D +LEA RVGGR+ G + +LGA V
Sbjct: 107 TGKVIIIGSGVSGLAAARQLQSFGM-DVTLLEARDRVGGRVATFRKGNYVADLGAMVVTG 165
Query: 87 GGPKSSPSLQIAKKIKLK 104
G +P ++K++ ++
Sbjct: 166 LG--GNPMAVVSKQVNME 181
>pdb|2EJR|A Chain A, Lsd1-Tranylcypromine Complex
pdb|2Z3Y|A Chain A, Crystal Structure Of Lysine-Specific Demethylase1
pdb|2Z5U|A Chain A, Crystal Structure Of Lysine-Specific Histone Demethylase 1
pdb|3ABT|A Chain A, Crystal Structure Of Lsd1 In Complex With Trans-2-
Pentafluorophenylcyclopropylamine
pdb|3ABU|A Chain A, Crystal Structure Of Lsd1 In Complex With A 2-Pcpa
Derivative, S1201
Length = 662
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 86/198 (43%), Gaps = 21/198 (10%)
Query: 249 LKLNKVVRNISYSK---DKVTVKTEDGS---VYQANYAIVSVSIGVL--QSDFIEFTPNL 300
+KLN VR + Y+ + + V T S +Y+ + + ++ +GVL Q ++F P L
Sbjct: 413 IKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPL 472
Query: 301 PLWKKLAINNFNMAIYTKIFMKFPYKFWPTGPGTEFFIYA----HERRGYFPIWQHLENE 356
P WK A+ K+ + F FW P F + R F W
Sbjct: 473 PEWKTSAVQRMGFGNLNKVVLCFDRVFW--DPSVNLFGHVGSTTASRGELFLFWN----- 525
Query: 357 MPGSNILFVTVTDEESRRVERQSDEKTKAEIMNNVLRKLFGNK-IPEPQSIFVPRWWSNR 415
+ + IL V E + +E SD+ + +L+ +FG+ +P+P+ V RW ++
Sbjct: 526 LYKAPILLALVAGEAAGIMENISDDVIVGRCL-AILKGIFGSSAVPQPKETVVSRWRADP 584
Query: 416 FFNGSYSNWPNGFTQQSY 433
+ GSYS G + Y
Sbjct: 585 WARGSYSYVAAGSSGNDY 602
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNIGGHTIELGANWVNS 86
+ VII+G+G+SG AA+ L+ G D +LEA RVGGR+ G + +LGA V
Sbjct: 107 TGKVIIIGSGVSGLAAARQLQSFGM-DVTLLEARDRVGGRVATFRKGNYVADLGAMVVTG 165
Query: 87 GGPKSSPSLQIAKKIKLK 104
G +P ++K++ ++
Sbjct: 166 LG--GNPMAVVSKQVNME 181
>pdb|2X0L|A Chain A, Crystal Structure Of A Neuro-Specific Splicing Variant Of
Human Histone Lysine Demethylase Lsd1
Length = 734
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 86/198 (43%), Gaps = 21/198 (10%)
Query: 249 LKLNKVVRNISYSK---DKVTVKTEDGS---VYQANYAIVSVSIGVL--QSDFIEFTPNL 300
+KLN VR + Y+ + + V T S +Y+ + + ++ +GVL Q ++F P L
Sbjct: 466 IKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPL 525
Query: 301 PLWKKLAINNFNMAIYTKIFMKFPYKFWPTGPGTEFFIYA----HERRGYFPIWQHLENE 356
P WK A+ K+ + F FW P F + R F W
Sbjct: 526 PEWKTSAVQRMGFGNLNKVVLCFDRVFW--DPSVNLFGHVGSTTASRGELFLFWN----- 578
Query: 357 MPGSNILFVTVTDEESRRVERQSDEKTKAEIMNNVLRKLFGNK-IPEPQSIFVPRWWSNR 415
+ + IL V E + +E SD+ + +L+ +FG+ +P+P+ V RW ++
Sbjct: 579 LYKAPILLALVAGEAAGIMENISDDVIVGRCL-AILKGIFGSSAVPQPKETVVSRWRADP 637
Query: 416 FFNGSYSNWPNGFTQQSY 433
+ GSYS G + Y
Sbjct: 638 WARGSYSYVAAGSSGNDY 655
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 13/115 (11%)
Query: 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNIGGHTIELGANWVNS 86
+ VII+G+G+SG AA+ L+ G D +LEA RVGGR+ G + +LGA V
Sbjct: 156 TGKVIIIGSGVSGLAAARQLQSFGM-DVTLLEARDRVGGRVATFRKGNYVADLGAMVVTG 214
Query: 87 GGPKSSPSLQIAKKIKLKTFYSDYANLTSNIYKQDGGLYQKHVVESAVRIAKTRD 141
G +P ++K++ N+ KQ LY+ + V++ K +D
Sbjct: 215 LG--GNPMAVVSKQV----------NMELAKIKQKCPLYEANGQADTVKVPKEKD 257
>pdb|2DW4|A Chain A, Crystal Structure Of Human Lsd1 At 2.3 A Resolution
Length = 660
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 86/198 (43%), Gaps = 21/198 (10%)
Query: 249 LKLNKVVRNISYSK---DKVTVKTEDGS---VYQANYAIVSVSIGVL--QSDFIEFTPNL 300
+KLN VR + Y+ + + V T S +Y+ + + ++ +GVL Q ++F P L
Sbjct: 413 IKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPL 472
Query: 301 PLWKKLAINNFNMAIYTKIFMKFPYKFWPTGPGTEFFIYA----HERRGYFPIWQHLENE 356
P WK A+ K+ + F FW P F + R F W
Sbjct: 473 PEWKTSAVQRMGFGNLNKVVLCFDRVFW--DPSVNLFGHVGSTTASRGELFLFWN----- 525
Query: 357 MPGSNILFVTVTDEESRRVERQSDEKTKAEIMNNVLRKLFGNK-IPEPQSIFVPRWWSNR 415
+ + IL V E + +E SD+ + +L+ +FG+ +P+P+ V RW ++
Sbjct: 526 LYKAPILLALVAGEAAGIMENISDDVIVGRCL-AILKGIFGSSAVPQPKETVVSRWRADP 584
Query: 416 FFNGSYSNWPNGFTQQSY 433
+ GSYS G + Y
Sbjct: 585 WARGSYSYVAAGSSGNDY 602
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNIGGHTIELGANWVNS 86
+ VII+G+G+SG AA+ L+ G D +LEA RVGGR+ G + +LGA V
Sbjct: 107 TGKVIIIGSGVSGLAAARQLQSFGM-DVTLLEARDRVGGRVATFRKGNYVADLGAMVVTG 165
Query: 87 GGPKSSPSLQIAKKIKLK 104
G +P ++K++ ++
Sbjct: 166 LG--GNPMAVVSKQVNME 181
>pdb|2IW5|A Chain A, Structural Basis For Corest-dependent Demethylation Of
Nucleosomes By The Human Lsd1 Histone Demethylase
pdb|2UXN|A Chain A, Structural Basis Of Histone Demethylation By Lsd1 Revealed
By Suicide Inactivation
pdb|2UXX|A Chain A, Human Lsd1 Histone Demethylase-Corest In Complex With An
Fad-Tranylcypromine Adduct
Length = 666
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 86/198 (43%), Gaps = 21/198 (10%)
Query: 249 LKLNKVVRNISYSK---DKVTVKTEDGS---VYQANYAIVSVSIGVL--QSDFIEFTPNL 300
+KLN VR + Y+ + + V T S +Y+ + + ++ +GVL Q ++F P L
Sbjct: 414 IKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPL 473
Query: 301 PLWKKLAINNFNMAIYTKIFMKFPYKFWPTGPGTEFFIYA----HERRGYFPIWQHLENE 356
P WK A+ K+ + F FW P F + R F W
Sbjct: 474 PEWKTSAVQRMGFGNLNKVVLCFDRVFW--DPSVNLFGHVGSTTASRGELFLFWN----- 526
Query: 357 MPGSNILFVTVTDEESRRVERQSDEKTKAEIMNNVLRKLFGNK-IPEPQSIFVPRWWSNR 415
+ + IL V E + +E SD+ + +L+ +FG+ +P+P+ V RW ++
Sbjct: 527 LYKAPILLALVAGEAAGIMENISDDVIVGRCL-AILKGIFGSSAVPQPKETVVSRWRADP 585
Query: 416 FFNGSYSNWPNGFTQQSY 433
+ GSYS G + Y
Sbjct: 586 WARGSYSYVAAGSSGNDY 603
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNIGGHTIELGANWVNS 86
+ VII+G+G+SG AA+ L+ G D +LEA RVGGR+ G + +LGA V
Sbjct: 108 TGKVIIIGSGVSGLAAARQLQSFGM-DVTLLEARDRVGGRVATFRKGNYVADLGAMVVTG 166
Query: 87 GGPKSSPSLQIAKKIKLK 104
G +P ++K++ ++
Sbjct: 167 LG--GNPMAVVSKQVNME 182
>pdb|2Z5Y|A Chain A, Crystal Structure Of Human Monoamine Oxidase A (G110a)
With Harmine
Length = 513
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 90/417 (21%), Positives = 159/417 (38%), Gaps = 29/417 (6%)
Query: 30 VIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHK-GNIGGHTIELGANWVNSGG 88
V+++G G+SG AAK L E G ++LEA RVGGR + N +++G +V G
Sbjct: 5 VVVIGGGISGLSAAKLLTEYGV-SVLVLEARDRVGGRTYTIRNEHVDYVDVGGAYV---G 60
Query: 89 PKSSPSLQIAKKIKLKTFYSDYANLTSNIYKQDGGLYQKHVVESAV----------RIAK 138
P + L+++K++ ++T+ + + K G Y V + +
Sbjct: 61 PTQNRILRLSKELGIETYKVNVSERLVQYVK--GKTYPFRAAFPPVWNPIAYLDYNNLWR 118
Query: 139 TRDAFCTNLSKMLSSETTRDDDTSILGSQRLLKEVPMTPLEMAIDYFF-NDYEDAEPPRI 197
T D + E D + + L+ ++ T Y F N +EP +
Sbjct: 119 TIDNMGKEIPTDAPWEAQHADKWDKMTMKELIDKICWTKTARRFAYLFVNINVTSEPHEV 178
Query: 198 TSLKTTYPRNQLVDFGEDSYFVADPRGFESVVHSVAKQFLSHRHQVIRDPRLKLNKVVRN 257
++L + Q G F G E + Q +S R + ++KLN V +
Sbjct: 179 SALWFLWYVKQC--GGTTRIFSVTNGGQERKFVGGSGQ-VSERIMDLLGDQVKLNHPVTH 235
Query: 258 ISYSKDKVTVKTEDGSVYQANYAIVSVSIGVLQSDFIEFTPNLPLWKKLAINNFNMAIYT 317
+ S D + ++T + Y+ Y I ++ + I F P LP + I M
Sbjct: 236 VDQSSDNIIIETLNHEHYECKYVINAIPPTLTAK--IHFRPELPAERNQLIQRLPMGAVI 293
Query: 318 KIFMKFPYKFWPTGPGTEFFIYAHERRGYFPIWQHLENEMPGSNILFVT--VTDEESRRV 375
K M + FW I E PI L++ P ++ + + ++ R+
Sbjct: 294 KCMMYYKEAFWKKKDYCGCMIIEDEDA---PISITLDDTKPDGSLPAIMGFILARKADRL 350
Query: 376 ERQSDEKTKAEIMNNVLRKLFGNKIPEPQSIFVPRWWSNRFFNGSYSNW-PNGFTQQ 431
+ E K +I + L + P W ++ G Y+ + P G Q
Sbjct: 351 AKLHKEIRKKKICELYAKVLGSQEALHPVHYEEKNWCEEQYSGGCYTAYFPPGIMTQ 407
>pdb|2Z5X|A Chain A, Crystal Structure Of Human Monoamine Oxidase A With
Harmine
Length = 513
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 88/415 (21%), Positives = 160/415 (38%), Gaps = 25/415 (6%)
Query: 30 VIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHK-GNIGGHTIELGANWVNSGG 88
V+++G G+SG AAK L E G ++LEA RVGGR + N +++G +V G
Sbjct: 5 VVVIGGGISGLSAAKLLTEYGV-SVLVLEARDRVGGRTYTIRNEHVDYVDVGGAYV---G 60
Query: 89 PKSSPSLQIAKKIKLKTFYSDYAN-----LTSNIYKQDGG---LYQKHVVESAVRIAKTR 140
P + L+++K++ ++T+ + + + Y G ++ + +T
Sbjct: 61 PTQNRILRLSKELGIETYKVNVSERLVQYVKGKTYPFRGAFPPVWNPIAYLDYNNLWRTI 120
Query: 141 DAFCTNLSKMLSSETTRDDDTSILGSQRLLKEVPMTPLEMAIDYFF-NDYEDAEPPRITS 199
D + E D + + L+ ++ T Y F N +EP +++
Sbjct: 121 DNMGKEIPTDAPWEAQHADKWDKMTMKELIDKICWTKTARRFAYLFVNINVTSEPHEVSA 180
Query: 200 LKTTYPRNQLVDFGEDSYFVADPRGFESVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNIS 259
L + Q G F G E + Q +S R + ++KLN V ++
Sbjct: 181 LWFLWYVKQC--GGTTRIFSVTNGGQERKFVGGSGQ-VSERIMDLLGDQVKLNHPVTHVD 237
Query: 260 YSKDKVTVKTEDGSVYQANYAIVSVSIGVLQSDFIEFTPNLPLWKKLAINNFNMAIYTKI 319
S D + ++T + Y+ Y I ++ + I F P LP + I M K
Sbjct: 238 QSSDNIIIETLNHEHYECKYVINAIPPTLTAK--IHFRPELPAERNQLIQRLPMGAVIKC 295
Query: 320 FMKFPYKFWPTGPGTEFFIYAHERRGYFPIWQHLENEMPGSNILFVT--VTDEESRRVER 377
M + FW I E PI L++ P ++ + + ++ R+ +
Sbjct: 296 MMYYKEAFWKKKDYCGCMIIEDEDA---PISITLDDTKPDGSLPAIMGFILARKADRLAK 352
Query: 378 QSDEKTKAEIMNNVLRKLFGNKIPEPQSIFVPRWWSNRFFNGSYSNW-PNGFTQQ 431
E K +I + L + P W ++ G Y+ + P G Q
Sbjct: 353 LHKEIRKKKICELYAKVLGSQEALHPVHYEEKNWCEEQYSGGCYTAYFPPGIMTQ 407
>pdb|2BXR|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form A
pdb|2BXR|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form A
pdb|2BXS|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form B
pdb|2BXS|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form B
Length = 527
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 88/415 (21%), Positives = 160/415 (38%), Gaps = 25/415 (6%)
Query: 30 VIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHK-GNIGGHTIELGANWVNSGG 88
V+++G G+SG AAK L E G ++LEA RVGGR + N +++G +V G
Sbjct: 16 VVVIGGGISGLSAAKLLTEYGV-SVLVLEARDRVGGRTYTIRNEHVDYVDVGGAYV---G 71
Query: 89 PKSSPSLQIAKKIKLKTFYSDYAN-----LTSNIYKQDGG---LYQKHVVESAVRIAKTR 140
P + L+++K++ ++T+ + + + Y G ++ + +T
Sbjct: 72 PTQNRILRLSKELGIETYKVNVSERLVQYVKGKTYPFRGAFPPVWNPIAYLDYNNLWRTI 131
Query: 141 DAFCTNLSKMLSSETTRDDDTSILGSQRLLKEVPMTPLEMAIDYFF-NDYEDAEPPRITS 199
D + E D + + L+ ++ T Y F N +EP +++
Sbjct: 132 DNMGKEIPTDAPWEAQHADKWDKMTMKELIDKICWTKTARRFAYLFVNINVTSEPHEVSA 191
Query: 200 LKTTYPRNQLVDFGEDSYFVADPRGFESVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNIS 259
L + Q G F G E + Q +S R + ++KLN V ++
Sbjct: 192 LWFLWYVKQC--GGTTRIFSVTNGGQERKFVGGSGQ-VSERIMDLLGDQVKLNHPVTHVD 248
Query: 260 YSKDKVTVKTEDGSVYQANYAIVSVSIGVLQSDFIEFTPNLPLWKKLAINNFNMAIYTKI 319
S D + ++T + Y+ Y I ++ + I F P LP + I M K
Sbjct: 249 QSSDNIIIETLNHEHYECKYVINAIPPTLTAK--IHFRPELPAERNQLIQRLPMGAVIKC 306
Query: 320 FMKFPYKFWPTGPGTEFFIYAHERRGYFPIWQHLENEMPGSNILFVT--VTDEESRRVER 377
M + FW I E PI L++ P ++ + + ++ R+ +
Sbjct: 307 MMYYKEAFWKKKDYCGCMIIEDEDA---PISITLDDTKPDGSLPAIMGFILARKADRLAK 363
Query: 378 QSDEKTKAEIMNNVLRKLFGNKIPEPQSIFVPRWWSNRFFNGSYSNW-PNGFTQQ 431
E K +I + L + P W ++ G Y+ + P G Q
Sbjct: 364 LHKEIRKKKICELYAKVLGSQEALHPVHYEEKNWCEEQYSGGCYTAYFPPGIMTQ 418
>pdb|3KVE|A Chain A, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
pdb|3KVE|B Chain B, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
pdb|3KVE|C Chain C, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
pdb|3KVE|D Chain D, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
Length = 486
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 95/344 (27%), Positives = 149/344 (43%), Gaps = 69/344 (20%)
Query: 20 IAPTSPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRL--HKGNIGGHTI 77
+ TS P + V++VGAGMSG AA L AG+K +LEAS R GGR+ H+ + G
Sbjct: 27 LKKTSNPKH-VVVVGAGMSGLSAAYVLAGAGHK-VTVLEASERAGGRVRTHRNSKEG--- 81
Query: 78 ELGANWVNSGGPKSSPSL-QIAKK------IKLKTFYSDYAN---LTSNIYK------QD 121
W + GP P +I ++ + L F + N NI K +D
Sbjct: 82 -----WYANLGPMRIPEKHRIVREYIRKFGLNLNEFSQENDNAWYFIKNIRKRVGEVNKD 136
Query: 122 GGLYQKHVV-----ESAVRI------AKTRDAFCTNLSKMLSSETTRDDDTSILGSQRLL 170
GL + V +SA ++ + +D TN S +L+ T + L+
Sbjct: 137 PGLLKYPVKPSEEGKSAGQLYEESLGSAVKDLKRTNCSYILNKYDTYST------KEYLI 190
Query: 171 KEVPMTP--LEMAIDYFFNDYEDAEPPRITSLKTTYPRNQLVDFGEDSYFVADPRGFESV 228
KE ++P ++M D N+ I SLK D F + R F+ +
Sbjct: 191 KEGNLSPGAVDMIGD-LLNEDSGYYVSFIESLK------------HDDIFAYEKR-FDEI 236
Query: 229 VHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVTVKTE----DGSVYQANYAIVSV 284
V + Q + ++ I + ++K N V I + ++VTV + D S A+Y IV
Sbjct: 237 VGGM-DQLPTSMYRAIEE-KVKFNARVIKIQQNANQVTVTYQTPEKDTSSNTADYVIVCT 294
Query: 285 SIGVLQSDFIEFTPNLPLWKKLAINNFNMAIYTKIFMKFPYKFW 328
+ + I+F P LP K+ A+ + + TKIF+ KFW
Sbjct: 295 TSRAARR--IQFEPPLPPKKQHALRSVHYRSGTKIFLTCSSKFW 336
>pdb|3RHA|A Chain A, The Crystal Structure Of Oxidoreductase From Arthrobacter
Aurescens
pdb|3RHA|B Chain B, The Crystal Structure Of Oxidoreductase From Arthrobacter
Aurescens
Length = 482
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 51/93 (54%), Gaps = 5/93 (5%)
Query: 30 VIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNIGGHTIELGANWVNSGGP 89
V+IVGAG SG AA+ L++AG +LEA RVGGR I G +E+G WV+ P
Sbjct: 10 VVIVGAGPSGLTAARELKKAGLS-VAVLEARDRVGGRTWTDTIDGAMLEIGGQWVS---P 65
Query: 90 KSSPSLQIAKKIKLKTFYSDYANLTSNIYKQDG 122
+ +++ ++ LK YS Y + S DG
Sbjct: 66 DQTVLMELLDELGLK-MYSRYRDGESVYIGADG 97
>pdb|1REO|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys Pallas
pdb|1TDK|A Chain A, L-amino Acid Oxidase From Agkistrodon Halys In Complex
With Suicide Substrate L-vinylglycine
pdb|1TDN|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys In Complex
With L-Leucine
pdb|1TDO|A Chain A, L-Amino Acid Oxidae From Agkistrodon Halys In Complex With
L- Phenylalanine
Length = 486
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 89/338 (26%), Positives = 144/338 (42%), Gaps = 57/338 (16%)
Query: 20 IAPTSPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNIGGHTIEL 79
+ TS P + V++VGAGMSG AA L AG++ +LEAS R GGR+
Sbjct: 27 LKATSNPKH-VVVVGAGMSGLSAAYVLSGAGHQ-VTVLEASERAGGRVRTYRNDKE---- 80
Query: 80 GANWVNSGGPKSSPS-LQIAKK------IKLKTFYSDYAN---LTSNIYKQDGGLYQ--- 126
+W + GP P +I ++ ++L F + N NI K+ G + +
Sbjct: 81 --DWYANLGPMRLPEKHRIVREYIRKFGLQLNEFSQENDNAWYFIKNIRKRVGEVKKDPG 138
Query: 127 --KHVVESAVRIAKTRDAFCTNLSKMLSSETTRDDDTSILG-------SQRLLKEVPMTP 177
K+ V+ + + +L K++ E R + + IL + LLKE ++P
Sbjct: 139 VLKYPVKPSEEGKSAGQLYEESLGKVV-EELKRTNCSYILNKYDTYSTKEYLLKEGNLSP 197
Query: 178 --LEMAIDYFFNDYEDAEPPRITSLKTTYPRNQLVDFGEDSYFVADPRGFESVVHSVAKQ 235
++M D D + ++P + D F + R F+ +V + K
Sbjct: 198 GAVDMIGDLMNED---------SGYYVSFPES----LRHDDIFAYEKR-FDEIVGGMDKL 243
Query: 236 FLSHRHQVIRDPRLKLNKVVRNISYSKDKVTV-----KTEDGSVYQANYAIVSVSIGVLQ 290
S + + ++ LN V I + +KVTV E SV A+Y IV + +
Sbjct: 244 PTSMYRAI--EEKVHLNAQVIKIQKNAEKVTVVYQTPAKEMASV-TADYVIVCTTSRATR 300
Query: 291 SDFIEFTPNLPLWKKLAINNFNMAIYTKIFMKFPYKFW 328
I+F P LP K A+ + + TKIF+ KFW
Sbjct: 301 R--IKFEPPLPPKKAHALRSVHYRSGTKIFLTCTKKFW 336
>pdb|2VVL|A Chain A, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger.
pdb|2VVL|B Chain B, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger.
pdb|2VVL|C Chain C, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger.
pdb|2VVL|D Chain D, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger.
pdb|2VVL|E Chain E, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger.
pdb|2VVL|F Chain F, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger.
pdb|2VVL|H Chain H, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger
Length = 495
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 11/72 (15%)
Query: 24 SPPSN----------SVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNIG 73
SPP+N VI++G G G A + L AG+K ++LEA R+GGR NI
Sbjct: 26 SPPTNIEDTDKDGPWDVIVIGGGYCGLTATRDLTVAGFKT-LLLEARDRIGGRSWSSNID 84
Query: 74 GHTIELGANWVN 85
G+ E+G WV+
Sbjct: 85 GYPYEMGGTWVH 96
>pdb|2VVM|A Chain A, The Structure Of Mao-N-D5, A Variant Of Monoamine
Oxidase From Aspergillus Niger.
pdb|2VVM|B Chain B, The Structure Of Mao-N-D5, A Variant Of Monoamine
Oxidase From Aspergillus Niger
Length = 495
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 11/72 (15%)
Query: 24 SPPSN----------SVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNIG 73
SPP+N VI++G G G A + L AG+K ++LEA R+GGR NI
Sbjct: 26 SPPTNIEDTDKDGPWDVIVIGGGYCGLTATRDLTVAGFKT-LLLEARDRIGGRSWSSNID 84
Query: 74 GHTIELGANWVN 85
G+ E+G WV+
Sbjct: 85 GYPYEMGGTWVH 96
>pdb|2VVL|G Chain G, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger
Length = 495
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 11/72 (15%)
Query: 24 SPPSN----------SVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNIG 73
SPP+N VI++G G G A + L AG+K ++LEA R+GGR NI
Sbjct: 26 SPPTNIEDTDKDGPWDVIVIGGGYCGLTATRDLTVAGFKT-LLLEARDRIGGRSWSSNID 84
Query: 74 GHTIELGANWVN 85
G+ E+G WV+
Sbjct: 85 GYPYEMGGTWVH 96
>pdb|4E0V|A Chain A, Structure Of L-Amino Acid Oxidase From The B. Jararacussu
Venom
pdb|4E0V|B Chain B, Structure Of L-Amino Acid Oxidase From The B. Jararacussu
Venom
Length = 497
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 93/351 (26%), Positives = 144/351 (41%), Gaps = 83/351 (23%)
Query: 20 IAPTSPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRL--HKGNIGGHTI 77
++ TS P V+IVGAGMSG AA L AG++ +LEAS R GG++ ++ G
Sbjct: 40 LSTTSNPKR-VVIVGAGMSGLSAAYVLANAGHQ-VTVLEASERAGGQVKTYRNEKEG--- 94
Query: 78 ELGANWVNSGGPKSSPSL-QIAKK------IKLKTFYS---------------------- 108
W + GP P +I ++ ++L F
Sbjct: 95 -----WYANLGPMRLPEKHRIVREYIRKFGLQLNEFSQENENAWYFIKNIRKRVGEVNKD 149
Query: 109 ----DYANLTSNIYKQDGGLYQKHVVESAVRIAKTRDAFCTNLSKMLSSETTRDDDTSIL 164
DY S + K G LY++ + ++ + + TN S ML+ T
Sbjct: 150 PGVLDYPVKPSEVGKSAGQLYEESLQKAVEELRR------TNCSYMLNKYDTYST----- 198
Query: 165 GSQRLLKEVPMTP--LEMAIDYFFNDYEDAEPPRITSLKTTYPRNQLVDFGEDSYFVADP 222
+ LLKE ++P ++M D N+ I SLK D F +
Sbjct: 199 -KEYLLKEGNLSPGAVDMIGD-LLNEDSGYYVSFIESLK------------HDDIFAYEK 244
Query: 223 RGFESVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVTV-----KTEDGSVYQA 277
R F+ +V + K + +Q I++ ++ LN V I +VTV + E SV A
Sbjct: 245 R-FDEIVGGMDK-LPTSMYQAIQE-KVHLNARVIKIQQDVKEVTVTYQTSEKETLSV-TA 300
Query: 278 NYAIVSVSIGVLQSDFIEFTPNLPLWKKLAINNFNMAIYTKIFMKFPYKFW 328
+Y IV + + I+F P LP K A+ + + TKIF+ KFW
Sbjct: 301 DYVIVCTTSRAARR--IKFEPPLPPKKAHALRSVHYRSGTKIFLTCTKKFW 349
>pdb|3K7T|A Chain A, Crystal Structure Of Apo-Form 6-Hydroxy-L-Nicotine
Oxidase, Crystal Form P3121
pdb|3K7T|B Chain B, Crystal Structure Of Apo-Form 6-Hydroxy-L-Nicotine
Oxidase, Crystal Form P3121
Length = 425
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 73/314 (23%), Positives = 122/314 (38%), Gaps = 51/314 (16%)
Query: 31 IIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLH---KGNIGGHTIELGANWVNS- 86
I+VG G SG AA+ L AG K ++LE R+GGR + N+ G +E+G +++
Sbjct: 5 IVVGGGFSGLKAARDLTNAG-KKVLLLEGGERLGGRAYSRESRNVPGLRVEIGGAYLHRK 63
Query: 87 ------------GGPKSSPSLQIAKKIKLKTFYSDYANLTSNIYKQDGGLYQKHVVESAV 134
G P ++ S + + +L D A + V A
Sbjct: 64 HHPRLAAELDRYGIPTAAASEFTSFRHRLGPTAVDQAFPIPG---------SEAVAVEAA 114
Query: 135 RIAKTRDAFCTNLSKMLSSETTRDDDTSILGSQRLLKEVPMTP------LEMAIDYFFND 188
RDA +L K L ++ D D + + ++ + P L A +
Sbjct: 115 TYTLLRDAHRIDLEKGLENQDLEDLDIPL---NEYVDKLDLPPVSRQFLLAWAWNMLGQP 171
Query: 189 YEDAEPPRITSLKTTYPRNQL-VDFGEDSYFVADPRGFESVVHSVAKQFLSHRHQVIRDP 247
+ A + L + + L V D F G +V +++++ P
Sbjct: 172 ADQASALWMLQLVAAHHYSILGVVLSLDEVF---SNGSADLVDAMSQEI----------P 218
Query: 248 RLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSIGVLQSDFIEFTPNLPLWKKLA 307
++L VV I S D V V +DG +QA+ IV+ + + I FTP LP ++
Sbjct: 219 EIRLQTVVTGIDQSGDVVNVTVKDGHAFQAHSVIVATPMNTWRR--IVFTPALPERRRSV 276
Query: 308 INNFNMAIYTKIFM 321
I + KI +
Sbjct: 277 IEEGHGGQGLKILI 290
>pdb|3K7M|X Chain X, Crystal Structure Of 6-Hydroxy-L-Nicotine Oxidase From
Arthrobacter Nicotinovorans
pdb|3K7Q|X Chain X, Crystal Structure Of Substrate-Bound 6-Hydroxy-L-Nicotine
Oxidase From Arthrobacter Nicotinovorans
pdb|3NG7|X Chain X, Complex Of Dithionite-Reduced 6-Hydroxy-L-Nicotine Oxidase
With Substrate Bound At Active Site And Inhibitor At
Exit Cavity
pdb|3NGC|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Intermediate
Methylmyosmine Product Formed During Catalytic Turnover
pdb|3NH3|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Final Ketone
Product Formed During Catalytic Turnover
pdb|3NHO|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Product Bound
At Active Site
pdb|3NK0|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Inhibitor
Bound At Active Site And Turnover Product At Exit Cavity
pdb|3NK1|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Serotonin
pdb|3NK2|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Dopamine
pdb|3NN6|X Chain X, Crystal Structure Of Inhibitor-Bound In Active Centre
6-Hydroxy-L- Nicotine Oxidase From Arthrobacter
Nicotinovorans
pdb|3NN0|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Nicotinamide
Length = 431
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 73/314 (23%), Positives = 122/314 (38%), Gaps = 51/314 (16%)
Query: 31 IIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLH---KGNIGGHTIELGANWVNS- 86
I+VG G SG AA+ L AG K ++LE R+GGR + N+ G +E+G +++
Sbjct: 5 IVVGGGFSGLKAARDLTNAG-KKVLLLEGGERLGGRAYSRESRNVPGLRVEIGGAYLHRK 63
Query: 87 ------------GGPKSSPSLQIAKKIKLKTFYSDYANLTSNIYKQDGGLYQKHVVESAV 134
G P ++ S + + +L D A + V A
Sbjct: 64 HHPRLAAELDRYGIPTAAASEFTSFRHRLGPTAVDQAFPIPG---------SEAVAVEAA 114
Query: 135 RIAKTRDAFCTNLSKMLSSETTRDDDTSILGSQRLLKEVPMTP------LEMAIDYFFND 188
RDA +L K L ++ D D + + ++ + P L A +
Sbjct: 115 TYTLLRDAHRIDLEKGLENQDLEDLDIPL---NEYVDKLDLPPVSRQFLLAWAWNMLGQP 171
Query: 189 YEDAEPPRITSLKTTYPRNQL-VDFGEDSYFVADPRGFESVVHSVAKQFLSHRHQVIRDP 247
+ A + L + + L V D F G +V +++++ P
Sbjct: 172 ADQASALWMLQLVAAHHYSILGVVLSLDEVF---SNGSADLVDAMSQEI----------P 218
Query: 248 RLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSIGVLQSDFIEFTPNLPLWKKLA 307
++L VV I S D V V +DG +QA+ IV+ + + I FTP LP ++
Sbjct: 219 EIRLQTVVTGIDQSGDVVNVTVKDGHAFQAHSVIVATPMNTWRR--IVFTPALPERRRSV 276
Query: 308 INNFNMAIYTKIFM 321
I + KI +
Sbjct: 277 IEEGHGGQGLKILI 290
>pdb|1O5W|A Chain A, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|B Chain B, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|C Chain C, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|D Chain D, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
Length = 534
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 84/432 (19%), Positives = 167/432 (38%), Gaps = 33/432 (7%)
Query: 30 VIIVGAGMSGFMAAKTLEEAGYK-DFIILEASSRVGGRLHKGNIGGHTIELGANWVNSGG 88
V+++G G+SG AAK L E YK + ++LEA RVGGR + + ++ WV+ GG
Sbjct: 24 VVVIGGGISGLAAAKLLSE--YKINVLVLEARDRVGGRTY--TVRNEHVK----WVDVGG 75
Query: 89 PKSSPS----LQIAKKIKLKTFYSDYAN-----LTSNIYKQDGG---LYQKHVVESAVRI 136
P+ L+++K++ ++T+ + + Y G ++ +
Sbjct: 76 AYVGPTQNRILRLSKELGIETYKVNVNERLVQYVKGKTYPFRGAFPPVWNPLAYLDYNNL 135
Query: 137 AKTRDAFCTNLSKMLSSETTRDDDTSILGSQRLLKEVPMTPLEMAIDYFF-NDYEDAEPP 195
+T D + + + + + L+ ++ T Y F N +EP
Sbjct: 136 WRTMDEMGKEIPVDAPWQARHAQEWDKMTMKDLIDKICWTKTAREFAYLFVNINVTSEPH 195
Query: 196 RITSLKTTYPRNQLVDFGEDSYFVADPRGFESVVHSVAKQFLSHRHQVIRDPRLKLNKVV 255
+++L + Q G F G E + Q ++ D ++KL+ V
Sbjct: 196 EVSALWFLWYVRQC--GGTARIFSVTNGGQERKFVGGSGQVSEQIMGLLGD-KVKLSSPV 252
Query: 256 RNISYSKDKVTVKTEDGSVYQANYAIVSVSIGVLQSDFIEFTPNLPLWKKLAINNFNMAI 315
I + D + V+T + Y+ Y I ++ + + I F P LP + I M
Sbjct: 253 TYIDQTDDNIIVETLNHEHYECKYVISAIP--PILTAKIHFKPELPPERNQLIQRLPMGA 310
Query: 316 YTKIFMKFPYKFWPTGPGTEFFIYAHERRGYFPIWQHLENEMPGSNILFVT--VTDEESR 373
K + + FW I E PI L++ P ++ + + ++
Sbjct: 311 VIKCMVYYKEAFWKKKDYCGCMIIEDEEA---PIAITLDDTKPDGSLPAIMGFILARKAD 367
Query: 374 RVERQSDEKTKAEIMNNVLRKLFGNKIPEPQSIFVPRWWSNRFFNGSYSNW-PNGFTQQS 432
R+ + + K +I + L + P W ++ G Y+ + P G Q
Sbjct: 368 RLAKLHKDIRKRKICELYAKVLGSQEALYPVHYEEKNWCEEQYSGGCYTAYFPPGIMTQY 427
Query: 433 YKELKVSICKLH 444
+ ++ + +++
Sbjct: 428 GRVIRQPVGRIY 439
>pdb|1F8R|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|B Chain B, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|C Chain C, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|D Chain D, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8S|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|B Chain B, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|C Chain C, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|D Chain D, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|E Chain E, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|F Chain F, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|G Chain G, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|H Chain H, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|2IID|A Chain A, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|B Chain B, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|C Chain C, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|D Chain D, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
Length = 498
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 92/338 (27%), Positives = 144/338 (42%), Gaps = 57/338 (16%)
Query: 20 IAPTSPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNIGGHTIEL 79
+ TS P + V+IVGAGM+G AA L AG++ +LEAS R GGR+
Sbjct: 27 LKATSNPKH-VVIVGAGMAGLSAAYVLAGAGHQ-VTVLEASERPGGRVRTYR------NE 78
Query: 80 GANWVNSGGPKSSPSL-QIAKK------IKLKTFYSDYAN---LTSNI------YKQDGG 123
A W + GP P +I ++ ++L F + N NI K+D G
Sbjct: 79 EAGWYANLGPMRLPEKHRIVREYIRKFDLRLNEFSQENDNAWYFIKNIRKKVGEVKKDPG 138
Query: 124 LYQKHVVESAVRIAKTRDAFCTNLSKMLSSETTRDDDTSILGS-------QRLLKEVPMT 176
L K+ V+ + + +L K++ E R + + IL + L+KE ++
Sbjct: 139 LL-KYPVKPSEAGKSAGQLYEESLGKVVE-ELKRTNCSYILNKYDTYSTKEYLIKEGDLS 196
Query: 177 P--LEMAIDYFFNDYEDAEPPRITSLKTTYPRNQLVDFGEDSYFVADPRGFESVVHSVAK 234
P ++M D N+ I SLK D F + R F+ +V + K
Sbjct: 197 PGAVDMIGD-LLNEDSGYYVSFIESLK------------HDDIFAYEKR-FDEIVDGMDK 242
Query: 235 QFLSHRHQVIRDPRLKLNKVVRNISYSKDKVTVKTEDGS----VYQANYAIVSVSIGVLQ 290
+ ++ I+D ++ N V I + KVTV E S A+Y IV + ++
Sbjct: 243 -LPTAMYRDIQD-KVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRAVR 300
Query: 291 SDFIEFTPNLPLWKKLAINNFNMAIYTKIFMKFPYKFW 328
I+F P L K A+ + + TKIF+ KFW
Sbjct: 301 --LIKFNPPLLPKKAHALRSVHYRSGTKIFLTCTTKFW 336
>pdb|3ZYX|A Chain A, Crystal Structure Of Human Monoamine Oxidase B In Complex
With Methylene Blue And Bearing The Double Mutation
I199a- Y326a
pdb|3ZYX|B Chain B, Crystal Structure Of Human Monoamine Oxidase B In Complex
With Methylene Blue And Bearing The Double Mutation
I199a- Y326a
Length = 519
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/213 (20%), Positives = 89/213 (41%), Gaps = 12/213 (5%)
Query: 237 LSHRHQVIRDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSV--SIGVLQSDFI 294
+S R + R+KL + V I +++ V V+T + +Y+A Y I ++ ++G+ I
Sbjct: 216 VSERIMDLLGDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTLGMK----I 271
Query: 295 EFTPNLPLWKKLAINNFNMAIYTKIFMKFPYKFWPTGPGTEFFIYAHERRGYFPIWQHLE 354
F P LP+ + I + K + + FW I E P+ L+
Sbjct: 272 HFNPPLPMMRNQMITRVPLGSVIKCIVYYKEPFWRKKDYCGTMIIDGEEA---PVAATLD 328
Query: 355 NEMPGSNILFVT--VTDEESRRVERQSDEKTKAEIMNNVLRKLFGNKIPEPQSIFVPRWW 412
+ P N + + ++R++ R + E+ ++ + L + EP W
Sbjct: 329 DTKPEGNYAAIMGFILAHKARKLARLTKEERLKKLCELYAKVLGSLEALEPVHYEEKNWC 388
Query: 413 SNRFFNGSYSNW-PNGFTQQSYKELKVSICKLH 444
++ G Y+ + P G Q + L+ + +++
Sbjct: 389 EEQYSGGCYTTYFPPGILTQYGRVLRQPVDRIY 421
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 5/72 (6%)
Query: 36 GMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHK-GNIGGHTIELGANWVNSGGPKSSPS 94
G+SG AAK L ++G + ++LEA RVGGR + N ++LG ++V GP +
Sbjct: 12 GISGMAAAKLLHDSGL-NVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYV---GPTQNRI 67
Query: 95 LQIAKKIKLKTF 106
L++AK++ L+T+
Sbjct: 68 LRLAKELGLETY 79
>pdb|2C75|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C75|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/213 (20%), Positives = 89/213 (41%), Gaps = 12/213 (5%)
Query: 237 LSHRHQVIRDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSV--SIGVLQSDFI 294
+S R + R+KL + V I +++ V V+T + +Y+A Y I ++ ++G+ I
Sbjct: 217 VSERIMDLLGDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTLGMK----I 272
Query: 295 EFTPNLPLWKKLAINNFNMAIYTKIFMKFPYKFWPTGPGTEFFIYAHERRGYFPIWQHLE 354
F P LP+ + I + K + + FW I E P+ L+
Sbjct: 273 HFNPPLPMMRNQMITRVPLGSVIKCIVYYKEPFWRKKDYCGTMIIDGEEA---PVAYTLD 329
Query: 355 NEMPGSNILFVT--VTDEESRRVERQSDEKTKAEIMNNVLRKLFGNKIPEPQSIFVPRWW 412
+ P N + + ++R++ R + E+ ++ + L + EP W
Sbjct: 330 DTKPEGNYAAIMGFILAHKARKLARLTKEERLKKLCELYAKVLGSLEALEPVHYEEKNWC 389
Query: 413 SNRFFNGSYSNW-PNGFTQQSYKELKVSICKLH 444
++ G Y+ + P G Q + L+ + +++
Sbjct: 390 EEQYSGGCYTTYFPPGILTQYGRVLRQPVDRIY 422
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 5/72 (6%)
Query: 36 GMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHK-GNIGGHTIELGANWVNSGGPKSSPS 94
G+SG AAK L ++G + ++LEA RVGGR + N ++LG ++V GP +
Sbjct: 13 GISGMAAAKLLHDSGL-NVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYV---GPTQNRI 68
Query: 95 LQIAKKIKLKTF 106
L++AK++ L+T+
Sbjct: 69 LRLAKELGLETY 80
>pdb|2C73|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C73|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/213 (20%), Positives = 89/213 (41%), Gaps = 12/213 (5%)
Query: 237 LSHRHQVIRDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSV--SIGVLQSDFI 294
+S R + R+KL + V I +++ V V+T + +Y+A Y I ++ ++G+ I
Sbjct: 217 VSERIMDLLGDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTLGMK----I 272
Query: 295 EFTPNLPLWKKLAINNFNMAIYTKIFMKFPYKFWPTGPGTEFFIYAHERRGYFPIWQHLE 354
F P LP+ + I + K + + FW I E P+ L+
Sbjct: 273 HFNPPLPMMRNQMITRVPLGSVIKCIVYYKEPFWRKKDYCGTMIIDGEEA---PVAYTLD 329
Query: 355 NEMPGSNILFVT--VTDEESRRVERQSDEKTKAEIMNNVLRKLFGNKIPEPQSIFVPRWW 412
+ P N + + ++R++ R + E+ ++ + L + EP W
Sbjct: 330 DTKPEGNYAAIMGFILAHKARKLARLTKEERLKKLCELYAKVLGSLEALEPVHYEEKNWC 389
Query: 413 SNRFFNGSYSNW-PNGFTQQSYKELKVSICKLH 444
++ G Y+ + P G Q + L+ + +++
Sbjct: 390 EEQYSGGCYTTYFPPGILTQYGRVLRQPVDRIY 422
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 5/72 (6%)
Query: 36 GMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHK-GNIGGHTIELGANWVNSGGPKSSPS 94
G+SG AAK L ++G + ++LEA RVGGR + N ++LG ++V GP +
Sbjct: 13 GISGMAAAKLLHDSGL-NVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYV---GPTQNRI 68
Query: 95 LQIAKKIKLKTF 106
L++AK++ L+T+
Sbjct: 69 LRLAKELGLETY 80
>pdb|2XFO|A Chain A, Tranylcypromine-Inhibited Human Monoamine Oxidase B
Ile199ala Mutant In Complex With 2-(2-Benzofuranyl)-2-
Imidazoline
pdb|2XFO|B Chain B, Tranylcypromine-Inhibited Human Monoamine Oxidase B
Ile199ala Mutant In Complex With 2-(2-Benzofuranyl)-2-
Imidazoline
Length = 520
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/213 (20%), Positives = 89/213 (41%), Gaps = 12/213 (5%)
Query: 237 LSHRHQVIRDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSV--SIGVLQSDFI 294
+S R + R+KL + V I +++ V V+T + +Y+A Y I ++ ++G+ I
Sbjct: 217 VSERIMDLLGDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTLGMK----I 272
Query: 295 EFTPNLPLWKKLAINNFNMAIYTKIFMKFPYKFWPTGPGTEFFIYAHERRGYFPIWQHLE 354
F P LP+ + I + K + + FW I E P+ L+
Sbjct: 273 HFNPPLPMMRNQMITRVPLGSVIKCIVYYKEPFWRKKDYCGTMIIDGEEA---PVAYTLD 329
Query: 355 NEMPGSNILFVT--VTDEESRRVERQSDEKTKAEIMNNVLRKLFGNKIPEPQSIFVPRWW 412
+ P N + + ++R++ R + E+ ++ + L + EP W
Sbjct: 330 DTKPEGNYAAIMGFILAHKARKLARLTKEERLKKLCELYAKVLGSLEALEPVHYEEKNWC 389
Query: 413 SNRFFNGSYSNW-PNGFTQQSYKELKVSICKLH 444
++ G Y+ + P G Q + L+ + +++
Sbjct: 390 EEQYSGGCYTTYFPPGILTQYGRVLRQPVDRIY 422
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 5/72 (6%)
Query: 36 GMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHK-GNIGGHTIELGANWVNSGGPKSSPS 94
G+SG AAK L ++G + ++LEA RVGGR + N ++LG ++V GP +
Sbjct: 13 GISGMAAAKLLHDSGL-NVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYV---GPTQNRI 68
Query: 95 LQIAKKIKLKTF 106
L++AK++ L+T+
Sbjct: 69 LRLAKELGLETY 80
>pdb|1GOS|A Chain A, Human Monoamine Oxidase B
pdb|1GOS|B Chain B, Human Monoamine Oxidase B
pdb|1OJ9|A Chain A, Human Monoamine Oxidase B In Complex With
1,4-Diphenyl-2-Butene
pdb|1OJ9|B Chain B, Human Monoamine Oxidase B In Complex With
1,4-Diphenyl-2-Butene
pdb|1OJA|A Chain A, Human Monoamine Oxidase B In Complex With Isatin
pdb|1OJA|B Chain B, Human Monoamine Oxidase B In Complex With Isatin
pdb|1OJC|A Chain A, Human Monoamine Oxidase B In Complex With
N-(2-Aminoethyl)-P-Chlorobenzamide
pdb|1OJC|B Chain B, Human Monoamine Oxidase B In Complex With
N-(2-Aminoethyl)-P-Chlorobenzamide
pdb|1OJD|A Chain A, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|B Chain B, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|C Chain C, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|D Chain D, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|E Chain E, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|F Chain F, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|G Chain G, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|H Chain H, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|I Chain I, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|L Chain L, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1S2Q|A Chain A, Crystal Structure Of Maob In Complex With
N-Propargyl-1(R)-Aminoindan (Rasagiline)
pdb|1S2Q|B Chain B, Crystal Structure Of Maob In Complex With
N-Propargyl-1(R)-Aminoindan (Rasagiline)
pdb|1S2Y|A Chain A, Crystal Structure Of Maob In Complex With
N-propargyl-1(s)- Aminoindan
pdb|1S2Y|B Chain B, Crystal Structure Of Maob In Complex With
N-propargyl-1(s)- Aminoindan
pdb|1S3B|A Chain A, Crystal Structure Of Maob In Complex With N-Methyl-N-
Propargyl-1(R)-Aminoindan
pdb|1S3B|B Chain B, Crystal Structure Of Maob In Complex With N-Methyl-N-
Propargyl-1(R)-Aminoindan
pdb|1S3E|A Chain A, Crystal Structure Of Maob In Complex With 6-Hydroxy-N-
Propargyl-1(R)-Aminoindan
pdb|1S3E|B Chain B, Crystal Structure Of Maob In Complex With 6-Hydroxy-N-
Propargyl-1(R)-Aminoindan
pdb|2BK3|A Chain A, Human Monoamine Oxidase B In Complex With Farnesol
pdb|2BK3|B Chain B, Human Monoamine Oxidase B In Complex With Farnesol
pdb|2BYB|A Chain A, Human Monoamine Oxidase B In Complex With Deprenyl
pdb|2BYB|B Chain B, Human Monoamine Oxidase B In Complex With Deprenyl
pdb|2C64|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C64|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C65|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C65|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C66|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C66|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C67|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C67|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C70|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C70|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2V5Z|A Chain A, Structure Of Human Mao B In Complex With The Selective
Inhibitor Safinamide
pdb|2V5Z|B Chain B, Structure Of Human Mao B In Complex With The Selective
Inhibitor Safinamide
pdb|2V60|A Chain A, Structure Of Human Mao B In Complex With The Selective
Inhibitor
7-(3-Chlorobenzyloxy)-4-Carboxaldehyde-Coumarin
pdb|2V60|B Chain B, Structure Of Human Mao B In Complex With The Selective
Inhibitor
7-(3-Chlorobenzyloxy)-4-Carboxaldehyde-Coumarin
pdb|2V61|A Chain A, Structure Of Human Mao B In Complex With The Selective
Inhibitor 7-(3-Chlorobenzyloxy)-4-(Methylamino)methyl-
Coumarin
pdb|2V61|B Chain B, Structure Of Human Mao B In Complex With The Selective
Inhibitor 7-(3-Chlorobenzyloxy)-4-(Methylamino)methyl-
Coumarin
pdb|2VRL|A Chain A, Structure Of Human Mao B In Complex With Benzylhydrazine
pdb|2VRL|B Chain B, Structure Of Human Mao B In Complex With Benzylhydrazine
pdb|2VRM|A Chain A, Structure Of Human Mao B In Complex With
Phenyethylhydrazine
pdb|2VRM|B Chain B, Structure Of Human Mao B In Complex With
Phenyethylhydrazine
pdb|2VZ2|A Chain A, Human Mao B In Complex With Mofegiline
pdb|2VZ2|B Chain B, Human Mao B In Complex With Mofegiline
pdb|2XCG|A Chain A, Tranylcypromine-Inhibited Human Monoamine Oxidase B In
Complex With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XCG|B Chain B, Tranylcypromine-Inhibited Human Monoamine Oxidase B In
Complex With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFN|A Chain A, Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl) -2-Imidazoline
pdb|2XFN|B Chain B, Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl) -2-Imidazoline
pdb|2XFP|A Chain A, Isatin-Inhibited Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFP|B Chain B, Isatin-Inhibited Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFQ|A Chain A, Rasagiline-Inhibited Human Monoamine Oxidase B In Complex
With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFQ|B Chain B, Rasagiline-Inhibited Human Monoamine Oxidase B In Complex
With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|3PO7|A Chain A, Human Monoamine Oxidase B In Complex With Zonisamide
pdb|3PO7|B Chain B, Human Monoamine Oxidase B In Complex With Zonisamide
pdb|4A79|A Chain A, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Pioglitazone
pdb|4A79|B Chain B, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Pioglitazone
pdb|4A7A|A Chain A, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Rosiglitazone
pdb|4A7A|B Chain B, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Rosiglitazone
Length = 520
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/213 (20%), Positives = 89/213 (41%), Gaps = 12/213 (5%)
Query: 237 LSHRHQVIRDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSV--SIGVLQSDFI 294
+S R + R+KL + V I +++ V V+T + +Y+A Y I ++ ++G+ I
Sbjct: 217 VSERIMDLLGDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTLGMK----I 272
Query: 295 EFTPNLPLWKKLAINNFNMAIYTKIFMKFPYKFWPTGPGTEFFIYAHERRGYFPIWQHLE 354
F P LP+ + I + K + + FW I E P+ L+
Sbjct: 273 HFNPPLPMMRNQMITRVPLGSVIKCIVYYKEPFWRKKDYCGTMIIDGEEA---PVAYTLD 329
Query: 355 NEMPGSNILFVT--VTDEESRRVERQSDEKTKAEIMNNVLRKLFGNKIPEPQSIFVPRWW 412
+ P N + + ++R++ R + E+ ++ + L + EP W
Sbjct: 330 DTKPEGNYAAIMGFILAHKARKLARLTKEERLKKLCELYAKVLGSLEALEPVHYEEKNWC 389
Query: 413 SNRFFNGSYSNW-PNGFTQQSYKELKVSICKLH 444
++ G Y+ + P G Q + L+ + +++
Sbjct: 390 EEQYSGGCYTTYFPPGILTQYGRVLRQPVDRIY 422
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 5/72 (6%)
Query: 36 GMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHK-GNIGGHTIELGANWVNSGGPKSSPS 94
G+SG AAK L ++G + ++LEA RVGGR + N ++LG ++V GP +
Sbjct: 13 GISGMAAAKLLHDSGL-NVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYV---GPTQNRI 68
Query: 95 LQIAKKIKLKTF 106
L++AK++ L+T+
Sbjct: 69 LRLAKELGLETY 80
>pdb|2BK4|A Chain A, Human Monoamine Oxidase B: I199f Mutant In Complex With
Rasagiline
pdb|2BK4|B Chain B, Human Monoamine Oxidase B: I199f Mutant In Complex With
Rasagiline
pdb|2BK5|A Chain A, Human Monoamine Oxidase B: I199f Mutant In Complex With
Isatin
pdb|2BK5|B Chain B, Human Monoamine Oxidase B: I199f Mutant In Complex With
Isatin
Length = 520
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/213 (20%), Positives = 89/213 (41%), Gaps = 12/213 (5%)
Query: 237 LSHRHQVIRDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSV--SIGVLQSDFI 294
+S R + R+KL + V I +++ V V+T + +Y+A Y I ++ ++G+ I
Sbjct: 217 VSERIMDLLGDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTLGMK----I 272
Query: 295 EFTPNLPLWKKLAINNFNMAIYTKIFMKFPYKFWPTGPGTEFFIYAHERRGYFPIWQHLE 354
F P LP+ + I + K + + FW I E P+ L+
Sbjct: 273 HFNPPLPMMRNQMITRVPLGSVIKCIVYYKEPFWRKKDYCGTMIIDGEEA---PVAYTLD 329
Query: 355 NEMPGSNILFVT--VTDEESRRVERQSDEKTKAEIMNNVLRKLFGNKIPEPQSIFVPRWW 412
+ P N + + ++R++ R + E+ ++ + L + EP W
Sbjct: 330 DTKPEGNYAAIMGFILAHKARKLARLTKEERLKKLCELYAKVLGSLEALEPVHYEEKNWC 389
Query: 413 SNRFFNGSYSNW-PNGFTQQSYKELKVSICKLH 444
++ G Y+ + P G Q + L+ + +++
Sbjct: 390 EEQYSGGCYTTYFPPGILTQYGRVLRQPVDRIY 422
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 5/72 (6%)
Query: 36 GMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHK-GNIGGHTIELGANWVNSGGPKSSPS 94
G+SG AAK L ++G + ++LEA RVGGR + N ++LG ++V GP +
Sbjct: 13 GISGMAAAKLLHDSGL-NVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYV---GPTQNRI 68
Query: 95 LQIAKKIKLKTF 106
L++AK++ L+T+
Sbjct: 69 LRLAKELGLETY 80
>pdb|2XFU|A Chain A, Human Monoamine Oxidase B With Tranylcypromine
pdb|2XFU|B Chain B, Human Monoamine Oxidase B With Tranylcypromine
Length = 519
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/213 (20%), Positives = 89/213 (41%), Gaps = 12/213 (5%)
Query: 237 LSHRHQVIRDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSV--SIGVLQSDFI 294
+S R + R+KL + V I +++ V V+T + +Y+A Y I ++ ++G+ I
Sbjct: 216 VSERIMDLLGDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTLGMK----I 271
Query: 295 EFTPNLPLWKKLAINNFNMAIYTKIFMKFPYKFWPTGPGTEFFIYAHERRGYFPIWQHLE 354
F P LP+ + I + K + + FW I E P+ L+
Sbjct: 272 HFNPPLPMMRNQMITRVPLGSVIKCIVYYKEPFWRKKDYCGTMIIDGEEA---PVAYTLD 328
Query: 355 NEMPGSNILFVT--VTDEESRRVERQSDEKTKAEIMNNVLRKLFGNKIPEPQSIFVPRWW 412
+ P N + + ++R++ R + E+ ++ + L + EP W
Sbjct: 329 DTKPEGNYAAIMGFILAHKARKLARLTKEERLKKLCELYAKVLGSLEALEPVHYEEKNWC 388
Query: 413 SNRFFNGSYSNW-PNGFTQQSYKELKVSICKLH 444
++ G Y+ + P G Q + L+ + +++
Sbjct: 389 EEQYSGGCYTTYFPPGILTQYGRVLRQPVDRIY 421
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 5/72 (6%)
Query: 36 GMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHK-GNIGGHTIELGANWVNSGGPKSSPS 94
G+SG AAK L ++G + ++LEA RVGGR + N ++LG ++V GP +
Sbjct: 12 GISGMAAAKLLHDSGL-NVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYV---GPTQNRI 67
Query: 95 LQIAKKIKLKTF 106
L++AK++ L+T+
Sbjct: 68 LRLAKELGLETY 79
>pdb|2C72|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C72|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/213 (20%), Positives = 89/213 (41%), Gaps = 12/213 (5%)
Query: 237 LSHRHQVIRDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSV--SIGVLQSDFI 294
+S R + R+KL + V I +++ V V+T + +Y+A Y I ++ ++G+ I
Sbjct: 217 VSERIMDLLGDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTLGMK----I 272
Query: 295 EFTPNLPLWKKLAINNFNMAIYTKIFMKFPYKFWPTGPGTEFFIYAHERRGYFPIWQHLE 354
F P LP+ + I + K + + FW I E P+ L+
Sbjct: 273 HFNPPLPMMRNQMITRVPLGSVIKCIVYYKEPFWRKKDYCGTMIIDGEEA---PVAYTLD 329
Query: 355 NEMPGSNILFVT--VTDEESRRVERQSDEKTKAEIMNNVLRKLFGNKIPEPQSIFVPRWW 412
+ P N + + ++R++ R + E+ ++ + L + EP W
Sbjct: 330 DTKPEGNYAAIMGFILAHKARKLARLTKEERLKKLCELYAKVLGSLEALEPVHYEEKNWC 389
Query: 413 SNRFFNGSYSNW-PNGFTQQSYKELKVSICKLH 444
++ G Y+ + P G Q + L+ + +++
Sbjct: 390 EEQYSGGCYTTYFPPGILTQYGRVLRQPVDRIY 422
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 5/72 (6%)
Query: 36 GMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHK-GNIGGHTIELGANWVNSGGPKSSPS 94
G+SG AAK L ++G + ++LEA RVGGR + N ++LG ++V GP +
Sbjct: 13 GISGMAAAKLLHDSGL-NVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYV---GPTQNRI 68
Query: 95 LQIAKKIKLKTF 106
L++AK++ L+T+
Sbjct: 69 LRLAKELGLETY 80
>pdb|2C76|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C76|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/213 (20%), Positives = 89/213 (41%), Gaps = 12/213 (5%)
Query: 237 LSHRHQVIRDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSV--SIGVLQSDFI 294
+S R + R+KL + V I +++ V V+T + +Y+A Y I ++ ++G+ I
Sbjct: 217 VSERIMDLLGDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTLGMK----I 272
Query: 295 EFTPNLPLWKKLAINNFNMAIYTKIFMKFPYKFWPTGPGTEFFIYAHERRGYFPIWQHLE 354
F P LP+ + I + K + + FW I E P+ L+
Sbjct: 273 HFNPPLPMMRNQMITRVPLGSVIKCIVYYKEPFWRKKDYCGTMIIDGEEA---PVAYTLD 329
Query: 355 NEMPGSNILFVT--VTDEESRRVERQSDEKTKAEIMNNVLRKLFGNKIPEPQSIFVPRWW 412
+ P N + + ++R++ R + E+ ++ + L + EP W
Sbjct: 330 DTKPEGNYAAIMGFILAHKARKLARLTKEERLKKLCELYAKVLGSLEALEPVHYEEKNWC 389
Query: 413 SNRFFNGSYSNW-PNGFTQQSYKELKVSICKLH 444
++ G Y+ + P G Q + L+ + +++
Sbjct: 390 EEQYSGGCYTTYFPPGILTQYGRVLRQPVDRIY 422
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 5/72 (6%)
Query: 36 GMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHK-GNIGGHTIELGANWVNSGGPKSSPS 94
G+SG AAK L ++G + ++LEA RVGGR + N ++LG ++V GP +
Sbjct: 13 GISGMAAAKLLHDSGL-NVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYV---GPTQNRI 68
Query: 95 LQIAKKIKLKTF 106
L++AK++ L+T+
Sbjct: 69 LRLAKELGLETY 80
>pdb|2E1M|A Chain A, Crystal Structure Of L-Glutamate Oxidase From
Streptomyces Sp. X-119-6
Length = 376
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 33/49 (67%), Gaps = 3/49 (6%)
Query: 20 IAPTSPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEA-SSRVGGRL 67
+ P PP ++IVGAG++G +A L AG+ D ILEA ++RVGGR+
Sbjct: 38 LNPPGPPKR-ILIVGAGIAGLVAGDLLTRAGH-DVTILEANANRVGGRI 84
>pdb|2JAE|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In The Unbound State
pdb|2JAE|B Chain B, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In The Unbound State
pdb|2JB1|A Chain A, The L-Amino Acid Oxidase From Rhodococcus Opacus In
Complex With L-Alanine
pdb|2JB1|B Chain B, The L-Amino Acid Oxidase From Rhodococcus Opacus In
Complex With L-Alanine
pdb|2JB3|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With O-Aminobenzoate
pdb|2JB3|B Chain B, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With O-Aminobenzoate
pdb|2JB2|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With L-Phenylalanine.
pdb|2JB2|B Chain B, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With L-Phenylalanine
Length = 489
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 81/184 (44%), Gaps = 40/184 (21%)
Query: 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNIG------------- 73
S+SV+++G G +G +A L++AGYK +LEA +R GGR+ G
Sbjct: 11 SHSVVVLGGGPAGLCSAFELQKAGYK-VTVLEARTRPGGRVWTARGGSEETDLSGETQKC 69
Query: 74 ----GHTIELGANWVNSGGPKSSPSLQIAKK--IKLKTFYSDYANLTSNIYKQDGGLYQK 127
GH +GA + P+S +L ++ ++++ F + AN N Y+ D L +
Sbjct: 70 TFSEGHFYNVGATRI----PQSHITLDYCRELGVEIQGFGNQNANTFVN-YQSDTSLSGQ 124
Query: 128 HVVESAVRIAKTRDAFCTNLSKMLSSETTRDDDTSILGSQRLLKEVPMTPLEMAIDYFFN 187
V A + D F +S++L T Q L +V + A+ F +
Sbjct: 125 SVTYRAAKA----DTFGY-MSELLKKAT----------DQGALDQVLSREDKDALSEFLS 169
Query: 188 DYED 191
D+ D
Sbjct: 170 DFGD 173
>pdb|2B9W|A Chain A, Crystal Structure Of Cla-Producing Fatty Acid Isomerase
From P. Acnes
pdb|2B9X|A Chain A, Crystal Structure Of Cla-Producing Fatty Acid Isomerase
From P. Acnes
pdb|2B9Y|A Chain A, Crystal Structure Of Cla-Producing Fatty Acid Isomerase
From P. Acnes
pdb|2BA9|A Chain A, Crystal Structure Of Cla-Producing Fatty Acid Isomerase
From P. Acnes
pdb|2BAB|A Chain A, Crystal Structure Of Cla-Producing Fatty Acid Isomerase
From P. Acnes
pdb|2BAC|A Chain A, Crystal Structure Of Cla-Producing Fatty Acid Isomerase
From P. Acnes
Length = 424
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 46 LEEAGYKDFIILEASSRVGGRLHKGNIGGHTIELGA 81
LE+AG+ D+ ILE + VGG+ H N G E+GA
Sbjct: 25 LEQAGFHDYTILERTDHVGGKCHSPNYHGRRYEMGA 60
>pdb|2IVD|A Chain A, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus With Acifluorfen
pdb|2IVD|B Chain B, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus With Acifluorfen
pdb|2IVE|A Chain A, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus
pdb|2IVE|B Chain B, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus
Length = 478
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 30 VIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNIGGHTIELGAN 82
V +VG G+SG A L G D ++LE+S+R+GG + + G+ +E G N
Sbjct: 19 VAVVGGGISGLAVAHHLRSRG-TDAVLLESSARLGGAVGTHALAGYLVEQGPN 70
>pdb|3LOV|A Chain A, Crystal Structure Of Putative Protoporphyrinogen Oxidase
(Yp_001813199.1) From Exiguobacterium Sp. 255-15 At
2.06 A Resolution
Length = 475
Score = 35.8 bits (81), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDF--IILEASSRVGGRLHKGNIGGHTIELGAN 82
S ++IVG G++G AA E A + D +LEA R+GG++ G TIE G +
Sbjct: 4 SKRLVIVGGGITGLAAAYYAERA-FPDLNITLLEAGERLGGKVATYREDGFTIERGPD 60
>pdb|2TMD|A Chain A, Correlation Of X-Ray Deduced And Experimental Amino Acid
Sequences Of Trimethylamine Dehydrogenase
pdb|2TMD|B Chain B, Correlation Of X-Ray Deduced And Experimental Amino Acid
Sequences Of Trimethylamine Dehydrogenase
pdb|1DJN|A Chain A, Structural And Biochemical Characterization Of Recombinant
Wild Type Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|1DJN|B Chain B, Structural And Biochemical Characterization Of Recombinant
Wild Type Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|1O94|A Chain A, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O94|B Chain B, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O95|A Chain A, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O95|B Chain B, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
Length = 729
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 28 NSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHK 69
+SV+IVGAG SG AA+ L E+GY + + + ++GG L++
Sbjct: 390 DSVLIVGAGPSGSEAARVLMESGYT-VHLTDTAEKIGGHLNQ 430
>pdb|1DJQ|A Chain A, Structural And Biochemical Characterization Of Recombinant
C30a Mutant Of Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|1DJQ|B Chain B, Structural And Biochemical Characterization Of Recombinant
C30a Mutant Of Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
Length = 729
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 28 NSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHK 69
+SV+IVGAG SG AA+ L E+GY + + + ++GG L++
Sbjct: 390 DSVLIVGAGPSGSEAARVLMESGYT-VHLTDTAEKIGGHLNQ 430
>pdb|3K30|A Chain A, Histamine Dehydrogenase From Nocardiodes Simplex
pdb|3K30|B Chain B, Histamine Dehydrogenase From Nocardiodes Simplex
Length = 690
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 30 VIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRL 67
V++VGAG SG AA+ L GY D ++ EA +GGR+
Sbjct: 394 VLVVGAGPSGLEAARALGVRGY-DVVLAEAGRDLGGRV 430
>pdb|4DSG|A Chain A, Crystal Structure Of Oxidized Udp-Galactopyranose Mutase
pdb|4DSG|B Chain B, Crystal Structure Of Oxidized Udp-Galactopyranose Mutase
pdb|4DSH|A Chain A, Crystal Structure Of Reduced Udp-Galactopyranose Mutase
pdb|4DSH|B Chain B, Crystal Structure Of Reduced Udp-Galactopyranose Mutase
Length = 484
Score = 35.0 bits (79), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 8/56 (14%)
Query: 30 VIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHK--------GNIGGHTI 77
++I+GAG +G AA L E GYK++ + E + GG ++GGH I
Sbjct: 12 IVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGGLSRSFLDENGFTWDLGGHVI 67
>pdb|3KE6|A Chain A, The Crystal Structure Of The Rsbu And Rsbw Domains Of
Rv1364c From Mycobacterium Tuberculosis
pdb|3KE6|B Chain B, The Crystal Structure Of The Rsbu And Rsbw Domains Of
Rv1364c From Mycobacterium Tuberculosis
Length = 399
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 59/132 (44%), Gaps = 25/132 (18%)
Query: 103 LKTFYSDYANLTSNIYKQDGGLYQKHVVESAVRIAKTRDAFCTNLSKMLSSETTRDDDTS 162
L+ +++A+L ++I GG V+++ A+ D C++ ++L T +DD +
Sbjct: 198 LEASTAEFADLAASIASGSGGF----VLDAP---ARPIDRLCSDTLELLLRSTGYNDDVT 250
Query: 163 ILGSQRLLKEVPMTPLEMAIDYFFNDYEDAEPPRITSLKTTYPRNQLVDFGEDSYFVADP 222
+L QR P PL + +D N R + R L + G D +AD
Sbjct: 251 LLAMQR---RAPTPPLHITLDATIN------AARTVRAQL---REWLAEIGADHSDIAD- 297
Query: 223 RGFESVVHSVAK 234
+VH++++
Sbjct: 298 -----IVHAISE 304
>pdb|3I6D|A Chain A, Crystal Structure Of Ppo From Bacillus Subtilis With Af
pdb|3I6D|B Chain B, Crystal Structure Of Ppo From Bacillus Subtilis With Af
Length = 470
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Query: 30 VIIVGAGMSGFMAA----KTLEEAGYK-DFIILEASSRVGGRLHKGNIGGHTIELGAN 82
V+I+G G++G AA K ++E + ++EAS RVGG++ G+ IE G +
Sbjct: 8 VVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKIQTVKKDGYIIERGPD 65
>pdb|1SEZ|A Chain A, Crystal Structure Of Protoporphyrinogen Ix Oxidase
pdb|1SEZ|B Chain B, Crystal Structure Of Protoporphyrinogen Ix Oxidase
Length = 504
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 30 VIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNIGGHTIELGAN 82
V ++GAG+SG AA L+ G + + EA + GG+L + G + GAN
Sbjct: 16 VAVIGAGVSGLAAAYKLKIHGL-NVTVFEAEGKAGGKLRSVSQDGLIWDEGAN 67
>pdb|3UTE|A Chain A, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Sulfate Complex
pdb|3UTE|B Chain B, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Sulfate Complex
pdb|3UTE|C Chain C, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Sulfate Complex
pdb|3UTE|D Chain D, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Sulfate Complex
pdb|3UTF|A Chain A, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase In Reduced State
pdb|3UTF|B Chain B, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase In Reduced State
pdb|3UTF|C Chain C, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase In Reduced State
pdb|3UTF|D Chain D, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase In Reduced State
pdb|3UTG|A Chain A, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Complexed With Udp In Reduced
State
pdb|3UTG|B Chain B, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Complexed With Udp In Reduced
State
pdb|3UTG|C Chain C, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Complexed With Udp In Reduced
State
pdb|3UTG|D Chain D, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Complexed With Udp In Reduced
State
pdb|3UTH|A Chain A, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Complexed With Substrate
Udp-Galp In Reduced State
pdb|3UTH|B Chain B, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Complexed With Substrate
Udp-Galp In Reduced State
pdb|3UTH|C Chain C, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Complexed With Substrate
Udp-Galp In Reduced State
pdb|3UTH|D Chain D, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Complexed With Substrate
Udp-Galp In Reduced State
pdb|4GDC|A Chain A, Crystal Strucure Of Oxidized Aspergillus Fumigatus
Udp-Galactopyranose Mutase Complexed With Nadph
pdb|4GDC|B Chain B, Crystal Strucure Of Oxidized Aspergillus Fumigatus
Udp-Galactopyranose Mutase Complexed With Nadph
pdb|4GDC|C Chain C, Crystal Strucure Of Oxidized Aspergillus Fumigatus
Udp-Galactopyranose Mutase Complexed With Nadph
pdb|4GDC|D Chain D, Crystal Strucure Of Oxidized Aspergillus Fumigatus
Udp-Galactopyranose Mutase Complexed With Nadph
pdb|4GDD|A Chain A, Crystal Strucure Of Oxidized Aspergillus Fumigatus
Udp-Galactopyranose Mutase Complexed With Nadh
pdb|4GDD|B Chain B, Crystal Strucure Of Oxidized Aspergillus Fumigatus
Udp-Galactopyranose Mutase Complexed With Nadh
pdb|4GDD|C Chain C, Crystal Strucure Of Oxidized Aspergillus Fumigatus
Udp-Galactopyranose Mutase Complexed With Nadh
pdb|4GDD|D Chain D, Crystal Strucure Of Oxidized Aspergillus Fumigatus
Udp-Galactopyranose Mutase Complexed With Nadh
pdb|4GDE|A Chain A, Crystal Strucure Of Nadph-Reduced Aspergillus Fumigatus
Udp- Galactopyranose
pdb|4GDE|B Chain B, Crystal Strucure Of Nadph-Reduced Aspergillus Fumigatus
Udp- Galactopyranose
pdb|4GDE|C Chain C, Crystal Strucure Of Nadph-Reduced Aspergillus Fumigatus
Udp- Galactopyranose
pdb|4GDE|D Chain D, Crystal Strucure Of Nadph-Reduced Aspergillus Fumigatus
Udp- Galactopyranose
Length = 513
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 9/68 (13%)
Query: 19 VIAPTSPP-SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKG------- 70
IA T P S V+++GAG +G AAK L + ++I++++ GG
Sbjct: 1 AIAMTHPDISVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLASTDVTPEGFL 60
Query: 71 -NIGGHTI 77
++GGH I
Sbjct: 61 YDVGGHVI 68
>pdb|2RGJ|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase
Phzs
Length = 402
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 30 VIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRV 63
++I GAG+ G A L +AG +LE+SS +
Sbjct: 7 ILIAGAGIGGLSCALALHQAGIGKVTLLESSSEI 40
>pdb|3NKS|A Chain A, Structure Of Human Protoporphyrinogen Ix Oxidase
Length = 477
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 28 NSVIIVGAGMSGFMAAKTLEEAGYKDFIIL-EASSRVGG--RLHKGNIGGHTIELGANWV 84
+V+++G G+SG A+ L A ++L E+S R+GG R +G G ELG +
Sbjct: 3 RTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGGWIRSVRGP-NGAIFELGPRGI 61
Query: 85 NSGGPKSSPSLQIAKKIKLKT 105
G + +L + ++ L +
Sbjct: 62 RPAGALGARTLLLVSELGLDS 82
>pdb|3C96|A Chain A, Crystal Structure Of The Flavin-Containing Monooxygenase
Phzs From Pseudomonas Aeruginosa. Northeast Structural
Genomics Consortium Target Par240
Length = 410
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 30 VIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRV 63
++I GAG+ G A L +AG +LE+SS +
Sbjct: 7 ILIAGAGIGGLSCALALHQAGIGKVTLLESSSEI 40
>pdb|3UKP|A Chain A, Crystal Structure Of R327a Udp-Galactopyranose Mutase
From Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKP|B Chain B, Crystal Structure Of R327a Udp-Galactopyranose Mutase
From Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKP|C Chain C, Crystal Structure Of R327a Udp-Galactopyranose Mutase
From Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKP|D Chain D, Crystal Structure Of R327a Udp-Galactopyranose Mutase
From Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKP|E Chain E, Crystal Structure Of R327a Udp-Galactopyranose Mutase
From Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKP|F Chain F, Crystal Structure Of R327a Udp-Galactopyranose Mutase
From Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKP|G Chain G, Crystal Structure Of R327a Udp-Galactopyranose Mutase
From Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKP|H Chain H, Crystal Structure Of R327a Udp-Galactopyranose Mutase
From Aspergillus Fumigatus In Complex With Udpgalp
Length = 509
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
Query: 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKG--------NIGGHTI 77
S V+++GAG +G AAK L + ++I++++ GG ++GGH I
Sbjct: 6 SVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLASTDVTPEGFLYDVGGHVI 64
>pdb|3UKQ|A Chain A, Crystal Structure Of R327k Udp-Galactopyranose Mutase
From Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKQ|B Chain B, Crystal Structure Of R327k Udp-Galactopyranose Mutase
From Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKQ|C Chain C, Crystal Structure Of R327k Udp-Galactopyranose Mutase
From Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKQ|D Chain D, Crystal Structure Of R327k Udp-Galactopyranose Mutase
From Aspergillus Fumigatus In Complex With Udpgalp
Length = 510
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
Query: 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKG--------NIGGHTI 77
S V+++GAG +G AAK L + ++I++++ GG ++GGH I
Sbjct: 6 SVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLASTDVTPEGFLYDVGGHVI 64
>pdb|3UKL|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udp
pdb|3UKL|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udp
pdb|3UKL|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udp
pdb|3UKL|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udp
pdb|3UKL|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udp
pdb|3UKL|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udp
pdb|3UKL|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udp
pdb|3UKL|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udp
Length = 510
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
Query: 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKG--------NIGGHTI 77
S V+++GAG +G AAK L + ++I++++ GG ++GGH I
Sbjct: 6 SVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLASTDVTPEGFLYDVGGHVI 64
>pdb|3UKK|A Chain A, Crystal Structure Of R182k-Udp-Galactopuranose Mutase
From Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKK|B Chain B, Crystal Structure Of R182k-Udp-Galactopuranose Mutase
From Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKK|C Chain C, Crystal Structure Of R182k-Udp-Galactopuranose Mutase
From Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKK|D Chain D, Crystal Structure Of R182k-Udp-Galactopuranose Mutase
From Aspergillus Fumigatus In Complex With Udpgalp
Length = 517
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
Query: 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKG--------NIGGHTI 77
S V+++GAG +G AAK L + ++I++++ GG ++GGH I
Sbjct: 6 SVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLASTDVTPEGFLYDVGGHVI 64
>pdb|3UKH|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
(Non-Reduced)
pdb|3UKH|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
(Non-Reduced)
pdb|3UKH|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
(Non-Reduced)
pdb|3UKH|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
(Non-Reduced)
pdb|3UKH|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
(Non-Reduced)
pdb|3UKH|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
(Non-Reduced)
pdb|3UKH|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
(Non-Reduced)
pdb|3UKH|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
(Non-Reduced)
Length = 519
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
Query: 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKG--------NIGGHTI 77
S V+++GAG +G AAK L + ++I++++ GG ++GGH I
Sbjct: 6 SVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLASTDVTPEGFLYDVGGHVI 64
>pdb|1KDG|A Chain A, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
pdb|1KDG|B Chain B, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
Length = 546
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 31 IIVGAGMSGFMAAKTLEEAGYKDFIILE 58
IIVGAG G +AA L EAG K ++LE
Sbjct: 11 IIVGAGPGGIIAADRLSEAG-KKVLLLE 37
>pdb|1NAA|A Chain A, Cellobiose Dehydrogenase Flavoprotein Fragment In
Complex With Cellobionolactam
pdb|1NAA|B Chain B, Cellobiose Dehydrogenase Flavoprotein Fragment In
Complex With Cellobionolactam
Length = 541
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 31 IIVGAGMSGFMAAKTLEEAGYKDFIILE 58
IIVGAG G +AA L EAG K ++LE
Sbjct: 6 IIVGAGPGGIIAADRLSEAG-KKVLLLE 32
>pdb|4AOS|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
pdb|4AOX|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 15 PFTLVIAP---TSPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGG 65
P ++V AP T S V++VGAG++G A G EA+S VGG
Sbjct: 6 PRSVVTAPDATTGTTSYDVVVVGAGIAGLYAIHRFRSQGLT-VRAFEAASGVGG 58
>pdb|4AP3|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 15 PFTLVIAP---TSPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGG 65
P ++V AP T S V++VGAG++G A G EA+S VGG
Sbjct: 6 PRSVVTAPDATTGTTSYDVVVVGAGIAGLYAIHRFRSQGLT-VRAFEAASGVGG 58
>pdb|4AP1|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 15 PFTLVIAP---TSPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGG 65
P ++V AP T S V++VGAG++G A G EA+S VGG
Sbjct: 6 PRSVVTAPDATTGTTSYDVVVVGAGIAGLYAIHRFRSQGLT-VRAFEAASGVGG 58
>pdb|3UOV|A Chain A, Crystal Structure Of Otemo (Fad Bound Form 1)
pdb|3UOV|B Chain B, Crystal Structure Of Otemo (Fad Bound Form 1)
pdb|3UOX|A Chain A, Crystal Structure Of Otemo (Fad Bound Form 2)
pdb|3UOX|B Chain B, Crystal Structure Of Otemo (Fad Bound Form 2)
pdb|3UOY|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp
(Form 1)
pdb|3UOY|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp
(Form 1)
pdb|3UOZ|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp
(Form 2)
pdb|3UOZ|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp
(Form 2)
pdb|3UP4|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp
(Form 3)
pdb|3UP4|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp
(Form 3)
pdb|3UP5|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp
(Form 4)
pdb|3UP5|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp
(Form 4)
Length = 545
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGG 65
P+ +++GAG++G A + +AG K + +EA VGG
Sbjct: 8 PALDAVVIGAGVTGIYQAFLINQAGMK-VLGIEAGEDVGG 46
>pdb|2GMH|A Chain A, Structure Of Porcine Electron Transfer Flavoprotein-
Ubiquinone Oxidoreductase In Complexed With Ubiquinone
pdb|2GMH|B Chain B, Structure Of Porcine Electron Transfer Flavoprotein-
Ubiquinone Oxidoreductase In Complexed With Ubiquinone
pdb|2GMJ|A Chain A, Structure Of Porcine Electron Transfer Flavoprotein-
Ubiquinone Oxidoreductase
pdb|2GMJ|B Chain B, Structure Of Porcine Electron Transfer Flavoprotein-
Ubiquinone Oxidoreductase
Length = 584
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 15/75 (20%)
Query: 30 VIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNIGGHTI-----------E 78
V+IVGAG +G AA L++ + E RV +IG HT+ E
Sbjct: 38 VVIVGAGPAGLSAATRLKQLAAQH----EKDLRVCLVEKAAHIGAHTLSGACLDPRAFEE 93
Query: 79 LGANWVNSGGPKSSP 93
L +W G P ++P
Sbjct: 94 LFPDWKEKGAPLNTP 108
>pdb|3UKA|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus
pdb|3UKA|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus
pdb|3UKA|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus
pdb|3UKA|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus
pdb|3UKF|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp (Reduced)
pdb|3UKF|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp (Reduced)
pdb|3UKF|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp (Reduced)
pdb|3UKF|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp (Reduced)
pdb|3UKF|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp (Reduced)
pdb|3UKF|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp (Reduced)
pdb|3UKF|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp (Reduced)
pdb|3UKF|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp (Reduced)
Length = 509
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 8/59 (13%)
Query: 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKG--------NIGGHTI 77
S V+++GAG +G AAK L + + I++++ GG ++GGH I
Sbjct: 6 SVDVLVIGAGPTGLGAAKRLNQIDGPSWXIVDSNETPGGLASTDVTPEGFLYDVGGHVI 64
>pdb|1CJ3|A Chain A, Mutant Tyr38glu Of Para-Hydroxybenzoate Hydroxylase
Length = 392
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 28 NSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS--RVGGRLHKGNIGGHTIEL 79
V I+GAG SG + + L +AG D +ILE + V GR+ G + ++L
Sbjct: 3 TQVAIIGAGPSGLLLGQLLHKAGI-DNVILERQTPDEVLGRIRAGVLEQGMVDL 55
>pdb|1H7X|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
pdb|1H7X|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
pdb|1H7X|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
pdb|1H7X|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
Length = 1025
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 18/39 (46%)
Query: 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGG 65
S + ++GAG + A L GY D I E VGG
Sbjct: 187 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGG 225
>pdb|1H7W|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1GT8|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GTE|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTH|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
Length = 1025
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 18/39 (46%)
Query: 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGG 65
S + ++GAG + A L GY D I E VGG
Sbjct: 187 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGG 225
>pdb|1NHS|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox
Centre In Enterococcal Nadh Peroxidase To A Disulfide
Length = 447
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%)
Query: 23 TSPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNIGGHTIELGAN 82
P N+V+++G+G G AA+ +AG K +I +G L K T E+ AN
Sbjct: 145 VDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEAN 204
>pdb|1NHR|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox
Centre In Enterococcal Nadh Peroxidase To A Disulfide
Length = 447
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%)
Query: 23 TSPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNIGGHTIELGAN 82
P N+V+++G+G G AA+ +AG K +I +G L K T E+ AN
Sbjct: 145 VDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEAN 204
>pdb|1JOA|A Chain A, Nadh Peroxidase With Cysteine-Sulfenic Acid
pdb|1NPX|A Chain A, Structure Of Nadh Peroxidase From Streptococcus Faecalis
10c1 Refined At 2.16 Angstroms Resolution
pdb|2NPX|A Chain A, Nadh Binding Site And Catalysis Of Nadh Peroxidase
Length = 447
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%)
Query: 23 TSPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNIGGHTIELGAN 82
P N+V+++G+G G AA+ +AG K +I +G L K T E+ AN
Sbjct: 145 VDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEAN 204
>pdb|1NHP|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And
Cys42ser Mutants: Active Site Structure, Mechanistic
Implications, And An Unusual Environment Of Arg303
Length = 447
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%)
Query: 23 TSPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNIGGHTIELGAN 82
P N+V+++G+G G AA+ +AG K +I +G L K T E+ AN
Sbjct: 145 VDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEAN 204
>pdb|1NHQ|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And
Cys42ser Mutants: Active Site Structure, Mechanistic
Implications, And An Unusual Environment Of Arg303
Length = 447
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%)
Query: 23 TSPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNIGGHTIELGAN 82
P N+V+++G+G G AA+ +AG K +I +G L K T E+ AN
Sbjct: 145 VDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEAN 204
>pdb|1F8W|A Chain A, Crystal Structure Of Nadh Peroxidase Mutant: R303m
Length = 447
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%)
Query: 23 TSPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNIGGHTIELGAN 82
P N+V+++G+G G AA+ +AG K +I +G L K T E+ AN
Sbjct: 145 VDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEAN 204
>pdb|2CVJ|A Chain A, Crystal Structure Of Thioredoxin Reductase-Related
Protein Ttha0370 From Thermus Thermophilus Hb8
pdb|2YWL|A Chain A, Crystal Structure Of Thioredoxin Reductase-Related
Protein Ttha0370 From Thermus Thermophilus Hb8
pdb|2YWL|B Chain B, Crystal Structure Of Thioredoxin Reductase-Related
Protein Ttha0370 From Thermus Thermophilus Hb8
Length = 180
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%)
Query: 30 VIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGG 65
VI+VG G SG AA L AG K ++ S+V G
Sbjct: 4 VIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKVKG 39
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,451,669
Number of Sequences: 62578
Number of extensions: 570215
Number of successful extensions: 1696
Number of sequences better than 100.0: 109
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 1518
Number of HSP's gapped (non-prelim): 155
length of query: 448
length of database: 14,973,337
effective HSP length: 102
effective length of query: 346
effective length of database: 8,590,381
effective search space: 2972271826
effective search space used: 2972271826
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)