Query 013178
Match_columns 448
No_of_seqs 214 out of 2011
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 01:11:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013178.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013178hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02676 polyamine oxidase 100.0 1.8E-54 4E-59 424.5 45.0 424 22-448 21-445 (487)
2 PLN02268 probable polyamine ox 100.0 9.7E-47 2.1E-51 370.0 41.3 391 28-448 1-406 (435)
3 PLN03000 amine oxidase 100.0 1.3E-46 2.9E-51 377.7 40.0 399 24-448 181-595 (881)
4 PLN02568 polyamine oxidase 100.0 5.7E-46 1.2E-50 366.6 41.8 410 25-448 3-507 (539)
5 COG1231 Monoamine oxidase [Ami 100.0 1.8E-47 3.9E-52 351.3 26.4 406 22-448 2-419 (450)
6 KOG0685 Flavin-containing amin 100.0 1.5E-46 3.2E-51 344.5 29.3 416 19-447 13-462 (498)
7 PLN02529 lysine-specific histo 100.0 2.2E-45 4.7E-50 368.5 40.2 399 24-448 157-570 (738)
8 PLN02328 lysine-specific histo 100.0 7.1E-45 1.5E-49 366.0 39.8 400 25-448 236-651 (808)
9 PLN02976 amine oxidase 100.0 2.8E-43 6E-48 361.8 40.9 401 25-448 691-1158(1713)
10 KOG0029 Amine oxidase [Seconda 100.0 6.8E-42 1.5E-46 331.3 30.2 402 22-448 10-431 (501)
11 TIGR00562 proto_IX_ox protopor 100.0 1.5E-38 3.3E-43 314.9 31.6 392 27-448 2-435 (462)
12 PRK12416 protoporphyrinogen ox 100.0 1.5E-37 3.2E-42 307.3 32.7 391 28-448 2-436 (463)
13 PRK11883 protoporphyrinogen ox 100.0 6.4E-36 1.4E-40 295.7 31.0 389 28-448 1-427 (451)
14 PLN02576 protoporphyrinogen ox 100.0 3.1E-35 6.7E-40 293.5 32.0 394 24-448 9-462 (496)
15 COG1232 HemY Protoporphyrinoge 100.0 8.4E-36 1.8E-40 281.9 24.6 385 28-448 1-421 (444)
16 PRK07233 hypothetical protein; 100.0 7.8E-35 1.7E-39 286.7 23.2 386 29-448 1-403 (434)
17 PF01593 Amino_oxidase: Flavin 100.0 5.4E-35 1.2E-39 288.5 16.4 392 37-448 1-425 (450)
18 PRK07208 hypothetical protein; 100.0 5.4E-32 1.2E-36 269.0 33.1 389 25-447 2-433 (479)
19 TIGR02731 phytoene_desat phyto 100.0 3.6E-32 7.9E-37 268.2 30.9 388 29-448 1-428 (453)
20 PLN02612 phytoene desaturase 100.0 3E-31 6.5E-36 265.4 27.3 400 22-448 88-520 (567)
21 TIGR02732 zeta_caro_desat caro 100.0 1.6E-27 3.4E-32 234.3 25.1 386 29-447 1-448 (474)
22 TIGR03467 HpnE squalene-associ 100.0 3.7E-27 8E-32 231.1 27.7 373 41-448 1-393 (419)
23 PLN02487 zeta-carotene desatur 100.0 6.1E-27 1.3E-31 231.5 27.6 390 26-447 74-524 (569)
24 TIGR02733 desat_CrtD C-3',4' d 100.0 7.8E-26 1.7E-30 225.3 30.8 354 27-397 1-409 (492)
25 KOG1276 Protoporphyrinogen oxi 99.9 1.5E-25 3.2E-30 203.1 23.2 398 23-448 7-468 (491)
26 COG3380 Predicted NAD/FAD-depe 99.9 4.9E-26 1.1E-30 194.2 16.0 278 28-412 2-280 (331)
27 TIGR02734 crtI_fam phytoene de 99.9 7.7E-23 1.7E-27 204.4 26.9 274 30-324 1-312 (502)
28 TIGR02730 carot_isom carotene 99.9 3.7E-22 8E-27 198.6 31.2 283 28-327 1-325 (493)
29 COG2907 Predicted NAD/FAD-bind 99.9 2E-22 4.3E-27 178.0 18.5 277 22-324 3-305 (447)
30 COG1233 Phytoene dehydrogenase 99.9 1E-20 2.2E-25 186.7 20.0 246 26-290 2-283 (487)
31 COG3349 Uncharacterized conser 99.8 4.6E-19 1E-23 167.4 10.1 392 28-448 1-435 (485)
32 PTZ00363 rab-GDP dissociation 99.7 4.1E-17 9E-22 157.4 16.2 248 24-284 1-286 (443)
33 KOG4254 Phytoene desaturase [C 99.7 1.4E-16 2.9E-21 145.9 17.9 85 219-313 257-343 (561)
34 TIGR00031 UDP-GALP_mutase UDP- 99.7 3.4E-16 7.3E-21 147.5 13.4 233 27-289 1-248 (377)
35 PF13450 NAD_binding_8: NAD(P) 99.7 1.1E-16 2.5E-21 112.1 5.3 68 32-101 1-68 (68)
36 COG2081 Predicted flavoprotein 99.6 1.2E-14 2.7E-19 132.8 12.0 57 223-285 108-164 (408)
37 PRK13977 myosin-cross-reactive 99.5 9.2E-14 2E-18 135.5 15.0 75 23-102 18-98 (576)
38 PF03486 HI0933_like: HI0933-l 99.5 5.3E-14 1.2E-18 134.5 12.9 56 224-285 107-163 (409)
39 COG0579 Predicted dehydrogenas 99.5 1.1E-13 2.3E-18 131.0 11.8 197 26-289 2-212 (429)
40 COG0562 Glf UDP-galactopyranos 99.5 8.3E-14 1.8E-18 122.8 9.2 71 27-101 1-74 (374)
41 PF01266 DAO: FAD dependent ox 99.4 5.9E-13 1.3E-17 127.6 10.2 57 225-288 146-203 (358)
42 PRK11728 hydroxyglutarate oxid 99.4 9.8E-13 2.1E-17 127.5 11.6 56 225-287 148-203 (393)
43 COG1635 THI4 Ribulose 1,5-bisp 99.4 9.9E-12 2.1E-16 104.0 12.3 68 26-105 29-96 (262)
44 TIGR01377 soxA_mon sarcosine o 99.3 8.1E-12 1.7E-16 120.9 12.5 54 226-286 145-198 (380)
45 PTZ00383 malate:quinone oxidor 99.3 5E-11 1.1E-15 117.1 16.7 63 225-288 210-273 (497)
46 PRK07236 hypothetical protein; 99.3 5.8E-11 1.3E-15 114.9 16.6 57 225-289 99-155 (386)
47 PRK08773 2-octaprenyl-3-methyl 99.3 8.1E-11 1.8E-15 114.2 17.3 57 226-288 113-169 (392)
48 PRK12409 D-amino acid dehydrog 99.3 2.7E-11 5.9E-16 118.3 13.1 56 226-287 197-257 (410)
49 PRK11259 solA N-methyltryptoph 99.3 7.6E-11 1.6E-15 113.9 14.9 55 226-287 149-203 (376)
50 PRK06847 hypothetical protein; 99.3 9.9E-11 2.1E-15 113.0 15.5 56 227-288 108-163 (375)
51 PRK07364 2-octaprenyl-6-methox 99.3 1.3E-10 2.8E-15 113.8 15.8 38 25-63 16-53 (415)
52 PRK12266 glpD glycerol-3-phosp 99.3 7.5E-10 1.6E-14 110.4 21.2 45 22-67 1-45 (508)
53 PRK13339 malate:quinone oxidor 99.2 3.3E-10 7.1E-15 111.0 17.6 46 24-70 3-50 (497)
54 TIGR00292 thiazole biosynthesi 99.2 2.7E-10 5.8E-15 102.4 15.4 41 26-67 20-60 (254)
55 TIGR03329 Phn_aa_oxid putative 99.2 1.4E-10 3.1E-15 114.6 14.9 54 225-286 182-235 (460)
56 PRK04176 ribulose-1,5-biphosph 99.2 1.7E-10 3.7E-15 104.1 14.0 41 26-67 24-64 (257)
57 PRK05257 malate:quinone oxidor 99.2 3.3E-10 7.2E-15 111.8 16.8 44 25-69 3-48 (494)
58 TIGR01988 Ubi-OHases Ubiquinon 99.2 1.8E-10 4E-15 111.6 14.8 55 227-287 107-162 (385)
59 PRK05714 2-octaprenyl-3-methyl 99.2 1.6E-10 3.4E-15 112.7 14.2 57 227-289 113-169 (405)
60 PRK07494 2-octaprenyl-6-methox 99.2 1.2E-09 2.7E-14 105.8 20.4 55 227-287 112-166 (388)
61 TIGR01373 soxB sarcosine oxida 99.2 5E-11 1.1E-15 116.3 10.5 51 14-65 18-69 (407)
62 PRK07333 2-octaprenyl-6-methox 99.2 3.6E-10 7.9E-15 110.2 15.9 56 226-287 111-166 (403)
63 PRK07588 hypothetical protein; 99.2 2.4E-10 5.2E-15 110.9 14.4 45 246-290 116-160 (391)
64 TIGR03364 HpnW_proposed FAD de 99.2 1.3E-10 2.9E-15 111.6 12.1 34 28-62 1-34 (365)
65 TIGR01320 mal_quin_oxido malat 99.2 4.7E-10 1E-14 110.7 16.0 57 225-287 177-239 (483)
66 PRK08163 salicylate hydroxylas 99.2 3E-10 6.5E-15 110.5 14.2 57 228-289 111-167 (396)
67 PLN02172 flavin-containing mon 99.2 6E-10 1.3E-14 109.1 16.2 45 24-69 7-51 (461)
68 PRK00711 D-amino acid dehydrog 99.2 2.7E-10 5.9E-15 111.5 14.0 56 225-287 200-256 (416)
69 COG0654 UbiH 2-polyprenyl-6-me 99.2 5.5E-10 1.2E-14 108.0 15.4 61 225-290 103-164 (387)
70 PRK09126 hypothetical protein; 99.2 2.9E-10 6.4E-15 110.4 13.4 44 245-288 124-167 (392)
71 TIGR01984 UbiH 2-polyprenyl-6- 99.2 7.2E-10 1.6E-14 107.3 16.0 58 226-288 105-162 (382)
72 PRK07190 hypothetical protein; 99.2 5.1E-10 1.1E-14 110.8 15.0 45 245-289 122-166 (487)
73 PRK01747 mnmC bifunctional tRN 99.2 6.3E-10 1.4E-14 114.9 15.8 56 226-288 408-463 (662)
74 PRK08274 tricarballylate dehyd 99.2 8.9E-10 1.9E-14 109.4 16.1 43 24-67 1-45 (466)
75 PRK06184 hypothetical protein; 99.2 6.6E-10 1.4E-14 111.2 15.2 60 26-106 2-63 (502)
76 PRK13369 glycerol-3-phosphate 99.2 2E-09 4.3E-14 107.5 18.5 44 23-67 2-45 (502)
77 PRK06753 hypothetical protein; 99.2 6.6E-10 1.4E-14 107.2 14.7 55 227-289 99-153 (373)
78 PRK07045 putative monooxygenas 99.1 8.1E-10 1.8E-14 107.1 15.1 58 227-289 107-166 (388)
79 PRK10157 putative oxidoreducta 99.1 6.6E-10 1.4E-14 108.6 14.3 39 26-65 4-42 (428)
80 PRK07608 ubiquinone biosynthes 99.1 1.2E-09 2.5E-14 106.1 15.7 54 227-287 112-166 (388)
81 PRK08013 oxidoreductase; Provi 99.1 1.2E-09 2.6E-14 106.2 15.7 57 228-289 113-169 (400)
82 PRK06834 hypothetical protein; 99.1 8.6E-10 1.9E-14 109.4 14.7 55 228-288 102-156 (488)
83 PRK08849 2-octaprenyl-3-methyl 99.1 1.8E-09 3.9E-14 104.4 16.7 45 245-289 124-168 (384)
84 COG0644 FixC Dehydrogenases (f 99.1 7.2E-10 1.6E-14 107.4 13.9 43 26-69 2-44 (396)
85 PRK08244 hypothetical protein; 99.1 1.1E-09 2.4E-14 109.4 15.5 58 27-105 2-61 (493)
86 PRK08850 2-octaprenyl-6-methox 99.1 1.4E-09 3E-14 106.0 15.7 44 245-288 125-168 (405)
87 PRK05868 hypothetical protein; 99.1 1.2E-09 2.6E-14 104.9 14.9 45 245-289 117-161 (372)
88 PF13738 Pyr_redox_3: Pyridine 99.1 1.5E-09 3.3E-14 95.1 13.9 42 245-286 95-136 (203)
89 PRK05732 2-octaprenyl-6-methox 99.1 1.7E-09 3.7E-14 105.2 15.3 43 245-287 126-168 (395)
90 PRK06617 2-octaprenyl-6-methox 99.1 2.3E-09 4.9E-14 103.3 15.8 58 226-289 104-161 (374)
91 PRK06481 fumarate reductase fl 99.1 1.6E-09 3.4E-14 108.1 15.0 41 26-67 60-100 (506)
92 PRK08020 ubiF 2-octaprenyl-3-m 99.1 3.1E-09 6.7E-14 103.2 16.3 56 228-288 114-169 (391)
93 PF00890 FAD_binding_2: FAD bi 99.1 6.4E-09 1.4E-13 101.9 18.1 56 224-285 139-200 (417)
94 PRK08132 FAD-dependent oxidore 99.1 3.9E-09 8.5E-14 106.8 17.1 66 20-106 16-83 (547)
95 PRK11101 glpA sn-glycerol-3-ph 99.1 4.1E-09 9E-14 106.0 16.3 40 25-65 4-43 (546)
96 PF01946 Thi4: Thi4 family; PD 99.1 4.8E-11 1E-15 100.7 1.6 70 26-107 16-85 (230)
97 TIGR00275 flavoprotein, HI0933 99.0 1.8E-09 3.9E-14 104.5 12.4 56 224-286 103-158 (400)
98 TIGR02032 GG-red-SF geranylger 99.0 3.9E-09 8.4E-14 98.3 14.3 37 28-65 1-37 (295)
99 PRK06183 mhpA 3-(3-hydroxyphen 99.0 4E-09 8.7E-14 106.5 15.3 63 25-106 8-70 (538)
100 PRK10015 oxidoreductase; Provi 99.0 5E-09 1.1E-13 102.4 15.3 38 26-64 4-41 (429)
101 PLN02463 lycopene beta cyclase 99.0 4E-09 8.7E-14 102.7 14.4 53 228-287 116-168 (447)
102 PLN02464 glycerol-3-phosphate 99.0 2E-08 4.3E-13 102.4 20.0 41 25-66 69-109 (627)
103 PLN02661 Putative thiazole syn 99.0 5.8E-09 1.3E-13 96.4 14.3 42 26-68 91-133 (357)
104 TIGR03219 salicylate_mono sali 99.0 4.2E-09 9.1E-14 103.0 14.0 56 226-289 105-160 (414)
105 PRK06475 salicylate hydroxylas 99.0 6.5E-09 1.4E-13 101.1 15.1 60 227-291 108-170 (400)
106 PRK08243 4-hydroxybenzoate 3-m 99.0 6.7E-09 1.5E-13 100.7 15.2 62 27-107 2-65 (392)
107 PRK06185 hypothetical protein; 99.0 6.2E-09 1.3E-13 101.7 14.9 39 22-61 1-39 (407)
108 COG0665 DadA Glycine/D-amino a 99.0 3.7E-09 8.1E-14 102.5 13.0 55 226-287 156-211 (387)
109 PRK07538 hypothetical protein; 99.0 7.1E-09 1.5E-13 101.3 14.5 60 28-106 1-60 (413)
110 KOG2820 FAD-dependent oxidored 99.0 2.8E-09 6E-14 95.2 10.2 43 245-287 166-211 (399)
111 COG0578 GlpA Glycerol-3-phosph 99.0 3.5E-08 7.5E-13 95.9 18.5 43 26-69 11-53 (532)
112 PRK06126 hypothetical protein; 99.0 8.5E-09 1.8E-13 104.5 15.0 66 23-107 3-68 (545)
113 TIGR02360 pbenz_hydroxyl 4-hyd 99.0 9.5E-09 2.1E-13 99.4 14.6 62 27-107 2-65 (390)
114 TIGR01813 flavo_cyto_c flavocy 99.0 6E-09 1.3E-13 102.7 13.3 38 29-67 1-39 (439)
115 PRK05249 soluble pyridine nucl 99.0 1.3E-08 2.8E-13 101.0 15.4 45 25-70 3-47 (461)
116 PRK09897 hypothetical protein; 99.0 1.4E-08 3.1E-13 100.4 15.3 44 27-70 1-46 (534)
117 PF05834 Lycopene_cycl: Lycope 99.0 2.9E-07 6.4E-12 88.4 24.0 54 227-287 88-141 (374)
118 PRK07121 hypothetical protein; 98.9 1.8E-08 3.8E-13 100.7 15.5 42 25-67 18-59 (492)
119 PF00996 GDI: GDP dissociation 98.9 2.1E-08 4.5E-13 96.1 15.0 241 24-283 1-284 (438)
120 TIGR01989 COQ6 Ubiquinone bios 98.9 1.4E-08 3.1E-13 99.8 14.4 44 246-289 134-184 (437)
121 TIGR02023 BchP-ChlP geranylger 98.9 1.3E-08 2.9E-13 98.5 13.9 32 28-60 1-32 (388)
122 PRK06134 putative FAD-binding 98.9 2.8E-08 6.1E-13 100.8 16.7 47 22-69 7-53 (581)
123 PRK12844 3-ketosteroid-delta-1 98.9 1.7E-08 3.7E-13 101.8 15.0 43 25-68 4-46 (557)
124 COG2072 TrkA Predicted flavopr 98.9 6.2E-09 1.3E-13 101.6 11.4 48 23-71 4-52 (443)
125 PF01494 FAD_binding_3: FAD bi 98.9 2.8E-09 6.1E-14 102.0 8.6 61 28-107 2-62 (356)
126 PRK06175 L-aspartate oxidase; 98.9 4.4E-08 9.5E-13 95.8 16.8 39 26-66 3-41 (433)
127 PRK11445 putative oxidoreducta 98.9 2E-08 4.4E-13 95.7 14.2 45 245-289 111-158 (351)
128 TIGR01292 TRX_reduct thioredox 98.9 1.3E-08 2.8E-13 95.1 12.4 41 245-286 70-110 (300)
129 TIGR01424 gluta_reduc_2 glutat 98.9 2.5E-08 5.3E-13 98.3 14.9 42 27-70 2-43 (446)
130 KOG1399 Flavin-containing mono 98.9 1.5E-08 3.2E-13 97.7 12.6 45 24-69 3-47 (448)
131 PRK12845 3-ketosteroid-delta-1 98.9 3.6E-08 7.9E-13 99.2 16.0 42 25-68 14-55 (564)
132 PRK05192 tRNA uridine 5-carbox 98.9 2.2E-08 4.7E-13 99.3 13.7 40 25-65 2-42 (618)
133 PRK12842 putative succinate de 98.9 3.1E-08 6.6E-13 100.6 14.8 46 23-69 5-50 (574)
134 PLN00093 geranylgeranyl diphos 98.9 3.1E-08 6.8E-13 97.0 14.2 40 21-61 33-72 (450)
135 PLN02927 antheraxanthin epoxid 98.9 3.2E-08 6.9E-13 99.9 14.4 55 227-289 195-249 (668)
136 PRK06996 hypothetical protein; 98.9 3.2E-08 6.9E-13 96.2 14.1 53 227-285 116-171 (398)
137 PLN02697 lycopene epsilon cycl 98.9 4.2E-08 9.1E-13 97.2 14.5 55 227-288 193-248 (529)
138 PRK07573 sdhA succinate dehydr 98.9 8.1E-08 1.8E-12 98.2 16.9 40 25-65 33-72 (640)
139 TIGR01790 carotene-cycl lycope 98.9 3.8E-08 8.3E-13 95.5 13.6 55 227-288 86-141 (388)
140 PF00743 FMO-like: Flavin-bind 98.8 2.4E-08 5.2E-13 99.3 12.0 37 28-65 2-38 (531)
141 PRK07803 sdhA succinate dehydr 98.8 1.3E-07 2.9E-12 96.6 17.7 39 26-65 7-45 (626)
142 PRK07804 L-aspartate oxidase; 98.8 1.6E-07 3.4E-12 94.6 18.0 41 24-65 13-53 (541)
143 TIGR01812 sdhA_frdA_Gneg succi 98.8 1.6E-07 3.4E-12 95.5 18.0 37 29-66 1-37 (566)
144 PRK05945 sdhA succinate dehydr 98.8 3.5E-08 7.5E-13 100.1 13.0 39 26-65 2-42 (575)
145 PF13454 NAD_binding_9: FAD-NA 98.8 8.3E-08 1.8E-12 79.9 13.1 35 251-285 120-154 (156)
146 PTZ00139 Succinate dehydrogena 98.8 1.5E-07 3.3E-12 95.9 17.6 41 25-66 27-67 (617)
147 PLN00128 Succinate dehydrogena 98.8 9.9E-08 2.2E-12 97.3 16.1 40 25-65 48-87 (635)
148 PRK12839 hypothetical protein; 98.8 1.1E-07 2.5E-12 95.9 16.3 46 23-69 4-49 (572)
149 PRK15317 alkyl hydroperoxide r 98.8 1.2E-07 2.6E-12 95.2 16.2 43 245-287 279-321 (517)
150 TIGR03140 AhpF alkyl hydropero 98.8 5.9E-08 1.3E-12 97.2 13.8 43 245-287 280-322 (515)
151 PRK06452 sdhA succinate dehydr 98.8 2E-07 4.3E-12 94.3 17.6 39 26-65 4-42 (566)
152 TIGR02485 CobZ_N-term precorri 98.8 6.8E-08 1.5E-12 94.9 13.9 57 223-285 120-180 (432)
153 KOG2844 Dimethylglycine dehydr 98.8 2E-08 4.3E-13 97.3 9.3 53 226-285 187-240 (856)
154 COG1249 Lpd Pyruvate/2-oxoglut 98.8 6.1E-08 1.3E-12 93.8 12.8 45 25-70 2-46 (454)
155 PRK12835 3-ketosteroid-delta-1 98.8 1.2E-07 2.7E-12 96.0 15.5 42 24-66 8-49 (584)
156 PRK06467 dihydrolipoamide dehy 98.8 7.5E-08 1.6E-12 95.5 13.2 44 25-69 2-45 (471)
157 PRK08401 L-aspartate oxidase; 98.8 2.2E-07 4.7E-12 92.0 16.3 34 27-61 1-34 (466)
158 PRK06069 sdhA succinate dehydr 98.8 3.1E-07 6.8E-12 93.3 17.8 41 25-66 3-46 (577)
159 PRK09078 sdhA succinate dehydr 98.8 2.6E-07 5.7E-12 94.0 16.9 40 26-66 11-50 (598)
160 PRK07395 L-aspartate oxidase; 98.8 3E-07 6.5E-12 92.5 16.9 42 23-66 5-46 (553)
161 PRK08294 phenol 2-monooxygenas 98.8 2.3E-07 5E-12 94.9 16.2 64 23-107 28-94 (634)
162 PRK08958 sdhA succinate dehydr 98.8 2.7E-07 5.8E-12 93.6 16.6 40 26-66 6-45 (588)
163 PLN02507 glutathione reductase 98.8 2E-07 4.2E-12 92.9 15.2 53 227-285 245-297 (499)
164 TIGR00551 nadB L-aspartate oxi 98.7 4.7E-07 1E-11 90.2 17.7 38 27-66 2-39 (488)
165 PRK06263 sdhA succinate dehydr 98.7 4.5E-07 9.9E-12 91.5 17.6 40 25-66 5-45 (543)
166 PRK12837 3-ketosteroid-delta-1 98.7 4E-07 8.8E-12 91.2 16.9 41 25-67 5-45 (513)
167 COG0492 TrxB Thioredoxin reduc 98.7 8.5E-08 1.8E-12 88.3 11.0 41 245-287 74-114 (305)
168 PLN02985 squalene monooxygenas 98.7 3.5E-07 7.6E-12 91.2 16.0 66 23-107 39-104 (514)
169 PF06039 Mqo: Malate:quinone o 98.7 7.4E-07 1.6E-11 84.2 16.9 59 224-287 179-243 (488)
170 PRK07843 3-ketosteroid-delta-1 98.7 1.5E-07 3.2E-12 95.1 13.3 43 25-68 5-47 (557)
171 PRK12843 putative FAD-binding 98.7 3.4E-07 7.3E-12 93.0 15.6 45 24-69 13-57 (578)
172 PRK08071 L-aspartate oxidase; 98.7 6.1E-07 1.3E-11 89.7 17.0 39 26-66 2-40 (510)
173 TIGR01176 fum_red_Fp fumarate 98.7 8.5E-07 1.8E-11 89.8 18.0 41 26-67 2-44 (580)
174 PRK08626 fumarate reductase fl 98.7 8.3E-07 1.8E-11 91.0 18.1 39 26-65 4-42 (657)
175 PRK09231 fumarate reductase fl 98.7 7.6E-07 1.6E-11 90.4 17.6 39 26-65 3-43 (582)
176 PRK07057 sdhA succinate dehydr 98.7 8.5E-07 1.8E-11 90.2 17.8 41 25-66 10-50 (591)
177 PRK06854 adenylylsulfate reduc 98.7 5.4E-07 1.2E-11 91.8 16.3 38 26-64 10-49 (608)
178 PF01134 GIDA: Glucose inhibit 98.7 4.9E-08 1.1E-12 91.8 8.0 41 245-286 109-150 (392)
179 PF06100 Strep_67kDa_ant: Stre 98.7 5E-07 1.1E-11 86.2 14.8 71 27-102 2-78 (500)
180 KOG2404 Fumarate reductase, fl 98.7 2.2E-07 4.8E-12 82.6 11.4 40 29-69 11-50 (477)
181 PLN02815 L-aspartate oxidase 98.7 1.1E-06 2.3E-11 89.0 17.9 40 25-66 27-66 (594)
182 TIGR02028 ChlP geranylgeranyl 98.7 2.6E-07 5.7E-12 89.5 12.9 36 28-64 1-36 (398)
183 PRK08275 putative oxidoreducta 98.7 4.5E-07 9.8E-12 91.7 15.0 40 25-65 7-48 (554)
184 PRK08205 sdhA succinate dehydr 98.7 8.4E-07 1.8E-11 90.2 16.8 38 26-65 4-41 (583)
185 KOG2665 Predicted FAD-dependen 98.6 2.3E-07 5.1E-12 82.2 10.5 77 24-104 45-130 (453)
186 PRK05329 anaerobic glycerol-3- 98.6 7E-07 1.5E-11 86.1 14.3 54 227-286 260-316 (422)
187 PRK07512 L-aspartate oxidase; 98.6 9.8E-07 2.1E-11 88.3 15.8 34 26-62 8-41 (513)
188 PTZ00306 NADH-dependent fumara 98.6 6.5E-07 1.4E-11 97.7 15.4 43 24-67 406-448 (1167)
189 PTZ00367 squalene epoxidase; P 98.6 6.6E-07 1.4E-11 89.8 14.2 37 24-61 30-66 (567)
190 TIGR01811 sdhA_Bsu succinate d 98.6 1.2E-06 2.6E-11 89.1 16.1 35 30-65 1-35 (603)
191 KOG2614 Kynurenine 3-monooxyge 98.6 6.8E-07 1.5E-11 82.8 12.3 37 26-63 1-37 (420)
192 PRK08641 sdhA succinate dehydr 98.6 2.6E-06 5.6E-11 86.6 17.4 40 26-66 2-41 (589)
193 PRK09077 L-aspartate oxidase; 98.6 3.5E-06 7.5E-11 84.9 18.0 40 25-66 6-45 (536)
194 PRK07845 flavoprotein disulfid 98.5 1.4E-06 3.1E-11 86.3 12.8 42 27-70 1-42 (466)
195 PRK06115 dihydrolipoamide dehy 98.5 1.8E-07 4E-12 92.6 5.5 44 26-70 2-45 (466)
196 KOG2415 Electron transfer flav 98.5 2.3E-07 5.1E-12 85.2 5.7 49 22-70 71-124 (621)
197 PRK12779 putative bifunctional 98.4 2.5E-07 5.3E-12 98.2 6.4 45 24-69 303-347 (944)
198 TIGR01350 lipoamide_DH dihydro 98.4 2.3E-07 5E-12 92.1 5.8 42 27-70 1-42 (461)
199 TIGR03315 Se_ygfK putative sel 98.4 2.8E-07 6E-12 97.0 6.6 44 25-69 535-578 (1012)
200 TIGR01421 gluta_reduc_1 glutat 98.4 2.5E-07 5.3E-12 91.2 5.2 43 26-70 1-43 (450)
201 PRK12831 putative oxidoreducta 98.4 3.8E-07 8.2E-12 90.0 6.4 46 22-68 135-180 (464)
202 PRK05976 dihydrolipoamide dehy 98.4 3E-07 6.5E-12 91.4 5.7 45 24-70 1-45 (472)
203 PRK06116 glutathione reductase 98.4 2.4E-07 5.2E-12 91.6 5.0 43 25-69 2-44 (450)
204 PRK07251 pyridine nucleotide-d 98.4 3.2E-07 7E-12 90.3 5.8 44 26-70 2-46 (438)
205 PLN02852 ferredoxin-NADP+ redu 98.4 5.2E-07 1.1E-11 88.5 7.1 46 23-69 22-69 (491)
206 PRK14727 putative mercuric red 98.4 4.3E-07 9.2E-12 90.4 6.5 54 16-70 5-58 (479)
207 PRK08010 pyridine nucleotide-d 98.4 3.9E-07 8.4E-12 89.9 6.1 44 26-70 2-46 (441)
208 KOG1335 Dihydrolipoamide dehyd 98.4 9.4E-06 2E-10 74.2 13.8 44 26-70 38-81 (506)
209 TIGR03378 glycerol3P_GlpB glyc 98.4 2.4E-06 5.2E-11 81.5 10.6 56 226-287 263-321 (419)
210 PRK14694 putative mercuric red 98.4 5E-07 1.1E-11 89.7 6.0 46 22-69 1-46 (468)
211 TIGR03143 AhpF_homolog putativ 98.4 5.7E-07 1.2E-11 90.9 6.4 43 25-69 2-44 (555)
212 TIGR00136 gidA glucose-inhibit 98.4 7.7E-06 1.7E-10 81.4 13.8 37 28-65 1-37 (617)
213 PRK06370 mercuric reductase; V 98.4 5.1E-07 1.1E-11 89.6 5.7 45 24-70 2-46 (463)
214 PRK06416 dihydrolipoamide dehy 98.3 5.3E-07 1.2E-11 89.5 5.7 43 26-70 3-45 (462)
215 PRK06292 dihydrolipoamide dehy 98.3 5.1E-07 1.1E-11 89.6 5.5 42 26-69 2-43 (460)
216 PF04820 Trp_halogenase: Trypt 98.3 1.8E-05 4E-10 77.8 15.8 58 222-289 153-212 (454)
217 PRK09853 putative selenate red 98.3 7.3E-07 1.6E-11 93.5 6.1 44 25-69 537-580 (1019)
218 PRK10262 thioredoxin reductase 98.3 8E-07 1.7E-11 83.8 5.9 46 22-69 1-46 (321)
219 COG1148 HdrA Heterodisulfide r 98.3 7.1E-07 1.5E-11 83.8 5.3 47 23-70 120-166 (622)
220 PRK07818 dihydrolipoamide dehy 98.3 7.4E-07 1.6E-11 88.5 5.8 43 26-70 3-45 (466)
221 PTZ00188 adrenodoxin reductase 98.3 1.2E-06 2.5E-11 84.8 6.7 51 19-70 31-82 (506)
222 TIGR02061 aprA adenosine phosp 98.3 9.2E-06 2E-10 82.4 13.1 33 29-62 1-37 (614)
223 PF12831 FAD_oxidored: FAD dep 98.3 7.1E-07 1.5E-11 87.3 4.9 38 29-67 1-38 (428)
224 PTZ00058 glutathione reductase 98.3 1.2E-06 2.5E-11 88.0 6.2 43 26-70 47-89 (561)
225 PRK12834 putative FAD-binding 98.3 1.2E-06 2.5E-11 88.7 6.0 43 25-68 2-46 (549)
226 TIGR01316 gltA glutamate synth 98.3 1.5E-06 3.1E-11 85.7 6.5 45 23-68 129-173 (449)
227 PRK06327 dihydrolipoamide dehy 98.2 1.2E-06 2.6E-11 87.1 5.3 44 25-69 2-51 (475)
228 PRK12775 putative trifunctiona 98.2 1.5E-06 3.3E-11 93.1 6.1 44 25-69 428-471 (1006)
229 TIGR02053 MerA mercuric reduct 98.2 1.3E-06 2.8E-11 86.7 5.3 40 28-69 1-40 (463)
230 KOG1439 RAB proteins geranylge 98.2 2.1E-05 4.5E-10 72.5 12.4 96 25-126 2-118 (440)
231 PRK12769 putative oxidoreducta 98.2 1.8E-06 3.9E-11 89.2 6.4 44 25-69 325-368 (654)
232 PRK12810 gltD glutamate syntha 98.2 2.1E-06 4.6E-11 85.1 6.4 46 23-69 139-184 (471)
233 PRK13748 putative mercuric red 98.2 1.4E-06 3.1E-11 88.7 5.3 43 26-70 97-139 (561)
234 PTZ00052 thioredoxin reductase 98.2 1.7E-06 3.8E-11 86.2 5.7 52 228-285 224-275 (499)
235 PRK12778 putative bifunctional 98.2 2.3E-06 5E-11 89.8 6.5 44 24-68 428-471 (752)
236 PRK13800 putative oxidoreducta 98.2 4.3E-05 9.3E-10 81.8 15.6 37 25-62 11-47 (897)
237 PRK11749 dihydropyrimidine deh 98.2 3E-06 6.5E-11 83.9 6.3 44 24-68 137-180 (457)
238 PRK12814 putative NADPH-depend 98.2 3.2E-06 6.9E-11 87.1 6.5 45 24-69 190-234 (652)
239 COG0493 GltD NADPH-dependent g 98.2 2.8E-06 6.1E-11 82.5 5.8 46 24-70 120-165 (457)
240 PRK06567 putative bifunctional 98.1 2.6E-06 5.6E-11 88.5 5.6 44 22-66 378-421 (1028)
241 TIGR01789 lycopene_cycl lycope 98.1 2.5E-06 5.4E-11 81.7 5.1 36 29-65 1-38 (370)
242 TIGR01423 trypano_reduc trypan 98.1 3.2E-06 6.9E-11 83.9 5.8 44 26-70 2-54 (486)
243 COG2509 Uncharacterized FAD-de 98.1 5.2E-05 1.1E-09 71.3 13.2 57 223-285 170-227 (486)
244 TIGR01318 gltD_gamma_fam gluta 98.1 8.2E-06 1.8E-10 80.8 8.3 44 25-69 139-182 (467)
245 KOG0399 Glutamate synthase [Am 98.1 3.4E-06 7.5E-11 86.4 5.6 44 25-69 1783-1826(2142)
246 PRK05335 tRNA (uracil-5-)-meth 98.1 3.5E-06 7.6E-11 80.3 5.4 37 27-64 2-38 (436)
247 PRK12809 putative oxidoreducta 98.1 4.2E-06 9.2E-11 86.1 6.5 44 25-69 308-351 (639)
248 PRK09564 coenzyme A disulfide 98.1 2.8E-05 6E-10 76.9 11.6 43 245-287 69-114 (444)
249 TIGR01372 soxA sarcosine oxida 98.1 3.9E-06 8.4E-11 90.4 6.0 43 26-69 162-204 (985)
250 COG5044 MRS6 RAB proteins gera 98.1 5.4E-05 1.2E-09 69.1 12.0 98 23-126 2-119 (434)
251 COG3573 Predicted oxidoreducta 98.1 5.7E-06 1.2E-10 74.2 5.4 42 25-67 3-46 (552)
252 PLN02546 glutathione reductase 98.0 5E-06 1.1E-10 83.5 5.3 43 27-70 79-130 (558)
253 TIGR01317 GOGAT_sm_gam glutama 98.0 7.5E-06 1.6E-10 81.4 6.3 44 25-69 141-184 (485)
254 COG4529 Uncharacterized protei 98.0 9.4E-05 2E-09 70.5 13.0 39 27-65 1-41 (474)
255 KOG1298 Squalene monooxygenase 98.0 6.3E-06 1.4E-10 75.4 4.7 35 25-60 43-77 (509)
256 COG3075 GlpB Anaerobic glycero 98.0 7.1E-06 1.5E-10 73.5 4.7 54 227-286 259-315 (421)
257 COG0029 NadB Aspartate oxidase 98.0 0.00011 2.4E-09 70.1 12.8 59 227-290 134-199 (518)
258 TIGR00137 gid_trmFO tRNA:m(5)U 98.0 7.1E-06 1.5E-10 78.7 5.1 37 28-65 1-37 (433)
259 PTZ00153 lipoamide dehydrogena 98.0 8.7E-06 1.9E-10 83.0 5.4 43 27-70 116-159 (659)
260 PF00732 GMC_oxred_N: GMC oxid 98.0 5.3E-06 1.1E-10 77.3 3.4 35 28-63 1-36 (296)
261 PRK12770 putative glutamate sy 98.0 1.6E-05 3.4E-10 75.9 6.7 47 22-69 13-59 (352)
262 PRK12771 putative glutamate sy 97.9 1.5E-05 3.2E-10 81.1 6.5 44 24-68 134-177 (564)
263 KOG2960 Protein involved in th 97.9 3.4E-06 7.3E-11 70.6 1.4 68 27-105 76-144 (328)
264 PF00070 Pyr_redox: Pyridine n 97.9 2.3E-05 4.9E-10 57.1 5.3 35 29-64 1-35 (80)
265 PRK09754 phenylpropionate diox 97.9 0.00014 3.1E-09 70.7 12.3 40 245-285 199-238 (396)
266 PF07992 Pyr_redox_2: Pyridine 97.9 1.4E-05 3E-10 69.8 4.7 32 29-61 1-32 (201)
267 TIGR01438 TGR thioredoxin and 97.9 1.5E-05 3.2E-10 79.3 5.2 42 27-69 2-51 (484)
268 TIGR03197 MnmC_Cterm tRNA U-34 97.9 4E-05 8.6E-10 74.1 8.0 56 226-288 135-190 (381)
269 TIGR02462 pyranose_ox pyranose 97.9 1.6E-05 3.6E-10 78.9 5.2 37 28-65 1-37 (544)
270 TIGR02352 thiamin_ThiO glycine 97.9 0.0022 4.7E-08 60.9 19.6 57 225-288 136-193 (337)
271 TIGR01350 lipoamide_DH dihydro 97.9 0.00023 4.9E-09 70.8 13.2 41 245-285 224-266 (461)
272 KOG0042 Glycerol-3-phosphate d 97.9 4.1E-05 8.9E-10 73.2 7.3 42 26-68 66-107 (680)
273 PRK04965 NADH:flavorubredoxin 97.8 0.00021 4.6E-09 69.0 12.5 42 245-286 196-237 (377)
274 PRK13984 putative oxidoreducta 97.8 2.6E-05 5.7E-10 80.0 6.4 44 24-68 280-323 (604)
275 PF13434 K_oxygenase: L-lysine 97.8 8.6E-05 1.9E-09 70.1 9.2 36 27-63 2-38 (341)
276 PRK02106 choline dehydrogenase 97.8 2.1E-05 4.5E-10 80.0 5.2 37 25-62 3-40 (560)
277 KOG2853 Possible oxidoreductas 97.8 2.7E-05 6E-10 70.1 4.7 38 25-63 84-125 (509)
278 COG0445 GidA Flavin-dependent 97.8 0.00019 4.1E-09 69.2 10.4 34 25-59 2-35 (621)
279 PRK06912 acoL dihydrolipoamide 97.8 2.8E-05 6E-10 77.1 4.9 40 29-70 2-41 (458)
280 PRK06416 dihydrolipoamide dehy 97.8 0.00036 7.9E-09 69.3 12.8 41 245-285 226-269 (462)
281 PRK14989 nitrite reductase sub 97.7 0.00037 7.9E-09 73.7 13.0 41 245-285 200-242 (847)
282 COG1053 SdhA Succinate dehydro 97.7 3.6E-05 7.7E-10 77.0 5.1 43 24-67 3-45 (562)
283 PRK08255 salicylyl-CoA 5-hydro 97.7 3.8E-05 8.2E-10 80.7 5.1 34 28-62 1-36 (765)
284 PRK06116 glutathione reductase 97.7 0.00074 1.6E-08 66.9 13.3 41 245-285 221-262 (450)
285 PRK07845 flavoprotein disulfid 97.6 0.00084 1.8E-08 66.7 13.4 41 245-285 231-271 (466)
286 PRK07251 pyridine nucleotide-d 97.6 0.00094 2E-08 65.9 13.2 34 27-61 157-190 (438)
287 COG2303 BetA Choline dehydroge 97.6 6E-05 1.3E-09 75.8 4.7 38 23-61 3-40 (542)
288 PRK07846 mycothione reductase; 97.6 0.0008 1.7E-08 66.5 12.6 40 246-285 220-259 (451)
289 TIGR01421 gluta_reduc_1 glutat 97.6 0.001 2.2E-08 65.8 13.1 41 245-285 220-262 (450)
290 TIGR03452 mycothione_red mycot 97.6 9E-05 2E-09 73.2 5.6 41 245-285 222-262 (452)
291 PRK07818 dihydrolipoamide dehy 97.6 0.001 2.3E-08 66.1 12.6 34 27-61 172-205 (466)
292 PRK07846 mycothione reductase; 97.6 8.5E-05 1.8E-09 73.3 4.8 40 27-70 1-40 (451)
293 PRK06327 dihydrolipoamide dehy 97.5 0.0011 2.5E-08 66.0 12.6 34 27-61 183-216 (475)
294 TIGR02374 nitri_red_nirB nitri 97.5 0.00042 9.1E-09 73.1 9.5 40 245-286 67-106 (785)
295 PRK05976 dihydrolipoamide dehy 97.5 0.0016 3.5E-08 64.9 13.1 34 27-61 180-213 (472)
296 PRK08010 pyridine nucleotide-d 97.5 0.0019 4.1E-08 63.8 13.3 40 245-285 212-251 (441)
297 TIGR02053 MerA mercuric reduct 97.5 0.0017 3.7E-08 64.5 13.0 34 27-61 166-199 (463)
298 KOG2852 Possible oxidoreductas 97.5 4.8E-05 1E-09 67.1 1.7 41 25-66 8-54 (380)
299 TIGR03452 mycothione_red mycot 97.5 0.0018 3.9E-08 64.0 13.0 36 27-63 169-204 (452)
300 KOG1800 Ferredoxin/adrenodoxin 97.5 0.0002 4.4E-09 65.7 5.6 44 26-70 19-64 (468)
301 PRK06912 acoL dihydrolipoamide 97.5 0.002 4.3E-08 63.9 13.3 34 27-61 170-203 (458)
302 PRK06370 mercuric reductase; V 97.5 0.0018 4E-08 64.3 13.0 34 27-61 171-204 (463)
303 PLN02785 Protein HOTHEAD 97.4 0.00018 3.8E-09 73.0 5.3 35 25-61 53-87 (587)
304 PRK06115 dihydrolipoamide dehy 97.4 0.0021 4.6E-08 63.8 12.9 35 26-61 173-207 (466)
305 KOG0405 Pyridine nucleotide-di 97.4 0.00056 1.2E-08 62.1 7.7 81 17-105 10-90 (478)
306 PRK14727 putative mercuric red 97.4 0.0027 5.8E-08 63.4 13.1 41 245-286 241-281 (479)
307 TIGR02374 nitri_red_nirB nitri 97.4 0.0015 3.3E-08 69.0 11.7 41 245-285 195-235 (785)
308 TIGR01810 betA choline dehydro 97.4 0.00015 3.2E-09 73.4 4.0 32 29-61 1-33 (532)
309 COG4716 Myosin-crossreactive a 97.4 0.0012 2.6E-08 60.6 9.2 70 26-100 21-96 (587)
310 PRK09754 phenylpropionate diox 97.3 0.00027 5.9E-09 68.7 5.4 38 26-63 2-40 (396)
311 TIGR03385 CoA_CoA_reduc CoA-di 97.3 0.0025 5.4E-08 62.7 12.2 34 27-61 137-170 (427)
312 PRK09564 coenzyme A disulfide 97.3 0.0026 5.6E-08 62.9 12.3 34 27-61 149-182 (444)
313 PRK13512 coenzyme A disulfide 97.3 0.00028 6.1E-09 69.5 5.3 37 28-64 2-39 (438)
314 PRK14694 putative mercuric red 97.3 0.0035 7.6E-08 62.4 13.0 40 245-285 231-270 (468)
315 TIGR03862 flavo_PP4765 unchara 97.3 0.0017 3.7E-08 61.7 10.0 56 222-285 82-138 (376)
316 PTZ00052 thioredoxin reductase 97.3 0.0041 8.8E-08 62.3 13.0 33 27-60 182-214 (499)
317 PRK13748 putative mercuric red 97.3 0.0036 7.8E-08 63.9 12.8 40 245-285 323-362 (561)
318 TIGR01423 trypano_reduc trypan 97.3 0.0044 9.6E-08 61.7 13.0 41 245-285 244-285 (486)
319 COG3634 AhpF Alkyl hydroperoxi 97.2 0.00027 5.8E-09 64.1 3.4 46 21-69 205-250 (520)
320 COG1206 Gid NAD(FAD)-utilizing 97.2 0.00035 7.6E-09 62.9 4.0 38 26-64 2-39 (439)
321 PTZ00318 NADH dehydrogenase-li 97.2 0.00046 9.9E-09 67.7 5.0 38 24-62 7-44 (424)
322 PRK04965 NADH:flavorubredoxin 97.1 0.00079 1.7E-08 65.0 5.5 35 27-61 2-37 (377)
323 TIGR01438 TGR thioredoxin and 97.1 0.0091 2E-07 59.6 13.0 41 245-285 233-276 (484)
324 TIGR03377 glycerol3P_GlpA glyc 97.1 0.11 2.3E-06 52.6 20.7 56 226-287 128-189 (516)
325 PTZ00058 glutathione reductase 97.1 0.0085 1.8E-07 60.6 12.7 34 27-61 237-270 (561)
326 KOG4716 Thioredoxin reductase 97.0 0.0013 2.9E-08 59.5 5.5 34 25-59 17-50 (503)
327 COG0446 HcaD Uncharacterized N 97.0 0.00083 1.8E-08 65.6 4.7 60 27-105 136-195 (415)
328 PLN02546 glutathione reductase 96.8 0.02 4.3E-07 58.0 12.8 35 26-61 251-285 (558)
329 PF07156 Prenylcys_lyase: Pren 96.7 0.0077 1.7E-07 57.2 8.9 61 219-289 121-188 (368)
330 PTZ00318 NADH dehydrogenase-li 96.7 0.019 4.1E-07 56.4 11.9 37 245-285 241-277 (424)
331 KOG3855 Monooxygenase involved 96.7 0.0035 7.6E-08 58.5 6.0 35 25-60 34-72 (481)
332 COG1252 Ndh NADH dehydrogenase 96.6 0.0031 6.8E-08 60.1 5.1 36 26-62 2-39 (405)
333 TIGR03169 Nterm_to_SelD pyridi 96.4 0.0034 7.4E-08 60.3 4.1 37 245-285 204-240 (364)
334 PF01210 NAD_Gly3P_dh_N: NAD-d 96.2 0.0053 1.2E-07 51.0 3.9 31 29-60 1-31 (157)
335 PF13434 K_oxygenase: L-lysine 96.2 0.11 2.5E-06 49.1 13.3 41 246-286 293-339 (341)
336 KOG0404 Thioredoxin reductase 96.2 0.012 2.5E-07 50.4 5.6 44 27-71 8-55 (322)
337 KOG2311 NAD/FAD-utilizing prot 96.2 0.0073 1.6E-07 57.5 4.8 36 23-59 24-59 (679)
338 KOG3923 D-aspartate oxidase [A 96.1 0.0052 1.1E-07 54.9 3.4 34 26-59 2-41 (342)
339 PRK01438 murD UDP-N-acetylmura 96.0 0.0088 1.9E-07 59.8 5.1 36 26-62 15-50 (480)
340 KOG1238 Glucose dehydrogenase/ 95.9 0.0088 1.9E-07 59.4 4.4 39 24-63 54-93 (623)
341 PF02737 3HCDH_N: 3-hydroxyacy 95.9 0.011 2.3E-07 50.4 4.5 31 29-60 1-31 (180)
342 COG1249 Lpd Pyruvate/2-oxoglut 95.8 0.014 3.1E-07 57.0 5.2 38 25-63 171-208 (454)
343 PF03721 UDPG_MGDP_dh_N: UDP-g 95.7 0.012 2.6E-07 50.2 3.9 32 28-60 1-32 (185)
344 PRK02705 murD UDP-N-acetylmura 95.6 0.015 3.1E-07 57.9 4.5 34 29-63 2-35 (459)
345 PF02558 ApbA: Ketopantoate re 95.4 0.025 5.3E-07 46.7 4.8 30 30-60 1-30 (151)
346 PRK06467 dihydrolipoamide dehy 95.4 0.023 4.9E-07 56.6 5.2 37 27-64 174-210 (471)
347 PRK07066 3-hydroxybutyryl-CoA 95.4 0.027 5.9E-07 52.5 5.2 34 27-61 7-40 (321)
348 PRK06129 3-hydroxyacyl-CoA deh 95.3 0.023 5.1E-07 53.1 4.7 33 28-61 3-35 (308)
349 PRK06292 dihydrolipoamide dehy 95.3 0.027 5.8E-07 56.0 5.4 39 26-65 168-206 (460)
350 PRK13512 coenzyme A disulfide 95.2 0.026 5.7E-07 55.6 5.0 37 27-64 148-184 (438)
351 PRK05249 soluble pyridine nucl 95.2 0.028 6.1E-07 55.9 5.2 37 27-64 175-211 (461)
352 PF01488 Shikimate_DH: Shikima 95.2 0.044 9.6E-07 44.2 5.3 36 25-60 10-45 (135)
353 COG0569 TrkA K+ transport syst 95.2 0.027 5.9E-07 49.8 4.4 33 28-61 1-33 (225)
354 COG0686 Ald Alanine dehydrogen 95.1 0.029 6.2E-07 50.6 4.1 44 26-70 167-218 (371)
355 PF01262 AlaDh_PNT_C: Alanine 95.0 0.04 8.7E-07 46.3 4.8 36 24-60 17-52 (168)
356 KOG2755 Oxidoreductase [Genera 95.0 0.018 3.8E-07 50.6 2.5 35 29-63 1-36 (334)
357 PRK06249 2-dehydropantoate 2-r 94.9 0.041 8.9E-07 51.6 5.2 34 26-60 4-37 (313)
358 PRK07530 3-hydroxybutyryl-CoA 94.9 0.044 9.6E-07 50.8 5.2 33 27-60 4-36 (292)
359 PRK08293 3-hydroxybutyryl-CoA 94.8 0.035 7.6E-07 51.3 4.4 32 28-60 4-35 (287)
360 KOG3851 Sulfide:quinone oxidor 94.8 0.029 6.3E-07 50.8 3.5 39 23-61 35-74 (446)
361 PF13738 Pyr_redox_3: Pyridine 94.8 0.035 7.5E-07 48.3 4.1 35 26-61 166-200 (203)
362 PRK14106 murD UDP-N-acetylmura 94.8 0.04 8.7E-07 54.6 5.0 35 26-61 4-38 (450)
363 COG3486 IucD Lysine/ornithine 94.7 0.13 2.7E-06 48.6 7.6 37 24-61 2-39 (436)
364 TIGR03140 AhpF alkyl hydropero 94.7 0.044 9.6E-07 55.2 5.0 35 26-61 351-385 (515)
365 PRK07819 3-hydroxybutyryl-CoA 94.6 0.045 9.8E-07 50.4 4.6 33 28-61 6-38 (286)
366 TIGR02354 thiF_fam2 thiamine b 94.6 0.057 1.2E-06 46.8 4.9 36 25-60 19-54 (200)
367 PRK09260 3-hydroxybutyryl-CoA 94.6 0.048 1E-06 50.5 4.6 32 28-60 2-33 (288)
368 PF00899 ThiF: ThiF family; I 94.6 0.054 1.2E-06 43.7 4.4 34 27-60 2-35 (135)
369 PTZ00153 lipoamide dehydrogena 94.5 0.051 1.1E-06 56.0 5.1 37 27-64 312-348 (659)
370 PRK08229 2-dehydropantoate 2-r 94.5 0.048 1E-06 51.9 4.6 32 28-60 3-34 (341)
371 PRK05675 sdhA succinate dehydr 94.5 0.79 1.7E-05 46.8 13.5 54 226-285 126-186 (570)
372 KOG4405 GDP dissociation inhib 94.5 0.054 1.2E-06 50.7 4.5 50 23-73 4-53 (547)
373 TIGR01470 cysG_Nterm siroheme 94.5 0.065 1.4E-06 46.6 4.9 34 26-60 8-41 (205)
374 PRK05708 2-dehydropantoate 2-r 94.4 0.059 1.3E-06 50.2 4.9 33 27-60 2-34 (305)
375 PLN02545 3-hydroxybutyryl-CoA 94.4 0.064 1.4E-06 49.8 5.1 33 27-60 4-36 (295)
376 TIGR01424 gluta_reduc_2 glutat 94.4 0.061 1.3E-06 53.2 5.2 36 27-63 166-201 (446)
377 PRK14989 nitrite reductase sub 94.3 0.056 1.2E-06 57.6 5.0 37 27-64 145-181 (847)
378 cd01080 NAD_bind_m-THF_DH_Cycl 94.3 0.079 1.7E-06 44.3 4.8 36 24-60 41-77 (168)
379 PLN02507 glutathione reductase 94.2 0.069 1.5E-06 53.6 5.1 36 27-63 203-238 (499)
380 PRK15317 alkyl hydroperoxide r 94.2 0.067 1.5E-06 54.0 5.1 35 26-61 350-384 (517)
381 COG1004 Ugd Predicted UDP-gluc 94.1 0.064 1.4E-06 50.4 4.3 32 28-60 1-32 (414)
382 PRK10262 thioredoxin reductase 94.1 0.081 1.7E-06 49.8 5.1 35 26-61 145-179 (321)
383 TIGR01316 gltA glutamate synth 94.1 0.081 1.8E-06 52.3 5.3 35 26-61 271-305 (449)
384 PRK06522 2-dehydropantoate 2-r 94.0 0.071 1.5E-06 49.7 4.6 31 29-60 2-32 (304)
385 TIGR03143 AhpF_homolog putativ 94.0 0.073 1.6E-06 54.2 4.9 37 26-63 142-178 (555)
386 PRK06130 3-hydroxybutyryl-CoA 94.0 0.09 2E-06 49.2 5.1 33 27-60 4-36 (311)
387 PRK08268 3-hydroxy-acyl-CoA de 93.9 0.094 2E-06 52.5 5.4 36 25-61 5-40 (507)
388 PRK06035 3-hydroxyacyl-CoA deh 93.9 0.08 1.7E-06 49.0 4.6 32 28-60 4-35 (291)
389 TIGR00518 alaDH alanine dehydr 93.9 0.14 3.1E-06 49.0 6.4 34 26-60 166-199 (370)
390 cd05292 LDH_2 A subgroup of L- 93.9 0.085 1.8E-06 49.2 4.7 33 29-61 2-35 (308)
391 PRK05808 3-hydroxybutyryl-CoA 93.9 0.092 2E-06 48.4 5.0 32 28-60 4-35 (282)
392 PRK14618 NAD(P)H-dependent gly 93.9 0.096 2.1E-06 49.5 5.2 33 27-60 4-36 (328)
393 PRK15116 sulfur acceptor prote 93.9 0.11 2.3E-06 47.1 5.1 37 25-61 28-64 (268)
394 PRK06718 precorrin-2 dehydroge 93.9 0.1 2.2E-06 45.3 4.9 34 26-60 9-42 (202)
395 PRK11064 wecC UDP-N-acetyl-D-m 93.8 0.076 1.7E-06 51.8 4.5 34 27-61 3-36 (415)
396 PRK04148 hypothetical protein; 93.8 0.07 1.5E-06 42.5 3.4 34 26-61 16-49 (134)
397 PTZ00082 L-lactate dehydrogena 93.8 0.12 2.7E-06 48.3 5.6 40 23-62 2-41 (321)
398 PRK12921 2-dehydropantoate 2-r 93.7 0.086 1.9E-06 49.2 4.6 30 29-59 2-31 (305)
399 PF13241 NAD_binding_7: Putati 93.7 0.055 1.2E-06 41.3 2.7 34 26-60 6-39 (103)
400 PRK12831 putative oxidoreducta 93.7 0.1 2.2E-06 51.8 5.3 36 25-61 279-314 (464)
401 PRK12549 shikimate 5-dehydroge 93.7 0.1 2.3E-06 47.9 4.9 35 26-60 126-160 (284)
402 cd05311 NAD_bind_2_malic_enz N 93.7 0.11 2.4E-06 46.0 4.8 36 25-60 23-60 (226)
403 PRK04690 murD UDP-N-acetylmura 93.6 0.092 2E-06 52.2 4.6 34 27-61 8-41 (468)
404 COG0771 MurD UDP-N-acetylmuram 93.6 0.092 2E-06 51.0 4.4 80 26-106 6-97 (448)
405 TIGR01292 TRX_reduct thioredox 93.5 0.12 2.5E-06 48.0 5.0 35 26-61 140-174 (300)
406 PRK12770 putative glutamate sy 93.5 0.11 2.4E-06 49.7 4.9 35 27-61 172-206 (352)
407 PF00070 Pyr_redox: Pyridine n 93.5 0.17 3.8E-06 36.4 4.9 40 227-272 41-80 (80)
408 PRK14619 NAD(P)H-dependent gly 93.5 0.13 2.8E-06 48.1 5.2 35 26-61 3-37 (308)
409 PRK06719 precorrin-2 dehydroge 93.4 0.14 2.9E-06 42.5 4.7 32 26-58 12-43 (157)
410 PF03446 NAD_binding_2: NAD bi 93.3 0.13 2.7E-06 43.1 4.5 33 27-60 1-33 (163)
411 PRK01368 murD UDP-N-acetylmura 93.2 0.11 2.4E-06 51.3 4.6 34 25-60 4-37 (454)
412 PRK08644 thiamine biosynthesis 93.2 0.16 3.5E-06 44.4 5.1 35 26-60 27-61 (212)
413 TIGR01763 MalateDH_bact malate 93.2 0.15 3.2E-06 47.5 5.0 34 28-61 2-35 (305)
414 COG3634 AhpF Alkyl hydroperoxi 93.1 0.085 1.9E-06 48.4 3.2 36 25-61 352-387 (520)
415 cd05293 LDH_1 A subgroup of L- 93.1 0.16 3.5E-06 47.3 5.3 36 26-61 2-38 (312)
416 cd01487 E1_ThiF_like E1_ThiF_l 93.1 0.17 3.6E-06 42.8 4.9 32 29-60 1-32 (174)
417 TIGR03026 NDP-sugDHase nucleot 93.0 0.12 2.6E-06 50.5 4.4 32 29-61 2-33 (411)
418 PRK00094 gpsA NAD(P)H-dependen 93.0 0.15 3.2E-06 48.1 4.8 32 28-60 2-33 (325)
419 TIGR02356 adenyl_thiF thiazole 92.9 0.19 4.1E-06 43.7 5.0 36 25-60 19-54 (202)
420 TIGR02355 moeB molybdopterin s 92.8 0.19 4E-06 45.0 5.0 35 26-60 23-57 (240)
421 PF00056 Ldh_1_N: lactate/mala 92.8 0.22 4.8E-06 40.4 5.0 33 28-60 1-35 (141)
422 PRK00421 murC UDP-N-acetylmura 92.8 0.13 2.8E-06 51.1 4.4 39 22-61 2-41 (461)
423 COG1748 LYS9 Saccharopine dehy 92.7 0.2 4.4E-06 47.6 5.3 45 27-72 1-54 (389)
424 PRK09424 pntA NAD(P) transhydr 92.7 0.2 4.2E-06 49.8 5.4 35 25-60 163-197 (509)
425 PRK12475 thiamine/molybdopteri 92.7 0.19 4E-06 47.5 5.0 35 26-60 23-57 (338)
426 PRK07531 bifunctional 3-hydrox 92.6 0.18 3.8E-06 50.5 5.1 32 28-60 5-36 (495)
427 cd01483 E1_enzyme_family Super 92.6 0.22 4.7E-06 40.6 4.7 32 29-60 1-32 (143)
428 KOG2304 3-hydroxyacyl-CoA dehy 92.6 0.15 3.2E-06 43.9 3.7 36 24-60 8-43 (298)
429 PRK14620 NAD(P)H-dependent gly 92.5 0.17 3.7E-06 47.7 4.7 31 29-60 2-32 (326)
430 PRK07688 thiamine/molybdopteri 92.5 0.21 4.6E-06 47.1 5.1 35 26-60 23-57 (339)
431 PRK05690 molybdopterin biosynt 92.5 0.21 4.5E-06 44.8 4.9 35 26-60 31-65 (245)
432 PRK11749 dihydropyrimidine deh 92.5 0.2 4.3E-06 49.8 5.2 35 26-60 272-306 (457)
433 TIGR02279 PaaC-3OHAcCoADH 3-hy 92.5 0.17 3.7E-06 50.6 4.6 33 27-60 5-37 (503)
434 PF02254 TrkA_N: TrkA-N domain 92.4 0.26 5.5E-06 38.4 4.7 31 30-61 1-31 (116)
435 PLN02602 lactate dehydrogenase 92.3 0.3 6.5E-06 46.2 5.9 36 26-61 36-72 (350)
436 PRK08328 hypothetical protein; 92.2 0.24 5.2E-06 44.0 4.9 35 26-60 26-60 (231)
437 PRK00066 ldh L-lactate dehydro 92.2 0.29 6.2E-06 45.8 5.6 36 25-60 4-40 (315)
438 PRK03369 murD UDP-N-acetylmura 92.2 0.2 4.3E-06 50.2 4.8 33 27-60 12-44 (488)
439 cd05191 NAD_bind_amino_acid_DH 92.1 0.32 7E-06 35.6 4.7 34 25-59 21-55 (86)
440 cd00757 ThiF_MoeB_HesA_family 92.0 0.26 5.6E-06 43.8 4.9 35 26-60 20-54 (228)
441 PRK07417 arogenate dehydrogena 92.0 0.2 4.3E-06 46.1 4.3 31 29-60 2-32 (279)
442 PRK01710 murD UDP-N-acetylmura 92.0 0.2 4.4E-06 49.7 4.7 33 28-61 15-47 (458)
443 TIGR01809 Shik-DH-AROM shikima 92.0 0.26 5.5E-06 45.4 5.0 35 26-60 124-158 (282)
444 PRK02472 murD UDP-N-acetylmura 91.9 0.22 4.7E-06 49.3 4.7 34 27-61 5-38 (447)
445 COG1893 ApbA Ketopantoate redu 91.9 0.22 4.8E-06 46.3 4.4 32 28-60 1-32 (307)
446 PRK08306 dipicolinate synthase 91.9 0.27 5.9E-06 45.5 5.0 34 26-60 151-184 (296)
447 PRK04308 murD UDP-N-acetylmura 91.8 0.26 5.6E-06 48.8 5.1 35 27-62 5-39 (445)
448 TIGR00561 pntA NAD(P) transhyd 91.8 0.55 1.2E-05 46.6 7.2 34 26-60 163-196 (511)
449 PLN02353 probable UDP-glucose 91.7 0.25 5.4E-06 48.9 4.7 32 28-60 2-35 (473)
450 PRK14027 quinate/shikimate deh 91.6 0.3 6.4E-06 44.9 4.9 34 27-60 127-160 (283)
451 cd01075 NAD_bind_Leu_Phe_Val_D 91.6 0.31 6.8E-06 42.2 4.8 34 26-60 27-60 (200)
452 KOG1335 Dihydrolipoamide dehyd 91.6 0.11 2.3E-06 48.5 1.9 40 26-66 210-249 (506)
453 COG0281 SfcA Malic enzyme [Ene 91.6 0.3 6.4E-06 46.3 4.8 38 23-60 195-234 (432)
454 PRK12778 putative bifunctional 91.5 0.3 6.4E-06 51.8 5.4 36 26-61 569-604 (752)
455 COG1250 FadB 3-hydroxyacyl-CoA 91.4 0.27 5.8E-06 45.3 4.3 33 27-60 3-35 (307)
456 PRK15057 UDP-glucose 6-dehydro 91.4 0.26 5.7E-06 47.5 4.6 30 29-60 2-31 (388)
457 cd00401 AdoHcyase S-adenosyl-L 91.4 0.3 6.5E-06 47.2 4.9 34 26-60 201-234 (413)
458 TIGR02437 FadB fatty oxidation 91.3 0.29 6.3E-06 51.2 5.0 36 25-61 311-346 (714)
459 PRK11730 fadB multifunctional 91.2 0.29 6.3E-06 51.3 5.0 34 27-61 313-346 (715)
460 PRK12814 putative NADPH-depend 91.2 0.35 7.5E-06 50.3 5.5 37 25-61 321-357 (652)
461 cd01485 E1-1_like Ubiquitin ac 91.0 0.39 8.4E-06 41.6 4.8 35 26-60 18-52 (198)
462 cd01492 Aos1_SUMO Ubiquitin ac 91.0 0.38 8.2E-06 41.6 4.7 35 26-60 20-54 (197)
463 cd05291 HicDH_like L-2-hydroxy 91.0 0.34 7.4E-06 45.2 4.8 33 29-61 2-35 (306)
464 PRK07502 cyclohexadienyl dehyd 90.9 0.36 7.8E-06 45.1 4.9 35 26-60 5-40 (307)
465 PRK12548 shikimate 5-dehydroge 90.9 0.4 8.7E-06 44.3 5.1 35 26-60 125-159 (289)
466 PRK08223 hypothetical protein; 90.9 0.41 8.8E-06 43.7 4.9 35 26-60 26-60 (287)
467 PRK11199 tyrA bifunctional cho 90.9 0.35 7.6E-06 46.5 4.8 35 25-60 96-131 (374)
468 PRK12550 shikimate 5-dehydroge 90.8 0.44 9.6E-06 43.4 5.2 33 28-60 123-155 (272)
469 TIGR02853 spore_dpaA dipicolin 90.6 0.41 8.8E-06 44.1 4.8 35 26-61 150-184 (287)
470 PTZ00117 malate dehydrogenase; 90.6 0.44 9.4E-06 44.7 5.0 36 26-61 4-39 (319)
471 TIGR01915 npdG NADPH-dependent 90.5 0.4 8.7E-06 42.3 4.5 31 29-60 2-33 (219)
472 TIGR02441 fa_ox_alpha_mit fatt 90.4 0.38 8.2E-06 50.6 4.9 35 26-61 334-368 (737)
473 PLN02172 flavin-containing mon 90.4 0.34 7.4E-06 48.0 4.4 35 26-61 203-237 (461)
474 PRK06223 malate dehydrogenase; 90.4 0.44 9.5E-06 44.5 4.9 34 28-61 3-36 (307)
475 TIGR01317 GOGAT_sm_gam glutama 90.3 0.48 1E-05 47.4 5.4 37 26-62 282-318 (485)
476 cd00755 YgdL_like Family of ac 90.3 0.51 1.1E-05 41.8 4.9 35 26-60 10-44 (231)
477 PRK00141 murD UDP-N-acetylmura 90.2 0.46 9.9E-06 47.4 5.1 33 27-60 15-47 (473)
478 TIGR00507 aroE shikimate 5-deh 90.0 0.48 1.1E-05 43.3 4.8 34 26-60 116-149 (270)
479 PRK02006 murD UDP-N-acetylmura 90.0 0.4 8.6E-06 48.2 4.6 34 27-61 7-40 (498)
480 PRK06153 hypothetical protein; 90.0 0.4 8.6E-06 45.5 4.2 35 26-60 175-209 (393)
481 cd05290 LDH_3 A subgroup of L- 89.9 0.51 1.1E-05 43.9 4.9 32 29-60 1-33 (307)
482 PRK00683 murD UDP-N-acetylmura 89.9 0.4 8.7E-06 47.0 4.4 33 28-61 4-36 (418)
483 PRK05600 thiamine biosynthesis 89.9 0.54 1.2E-05 45.0 5.2 35 26-60 40-74 (370)
484 cd05312 NAD_bind_1_malic_enz N 89.8 0.58 1.2E-05 42.4 4.9 38 24-61 22-69 (279)
485 cd01078 NAD_bind_H4MPT_DH NADP 89.8 0.56 1.2E-05 40.4 4.8 34 26-60 27-61 (194)
486 PRK12779 putative bifunctional 89.8 0.45 9.8E-06 51.4 5.0 35 26-61 446-480 (944)
487 COG1063 Tdh Threonine dehydrog 89.8 0.51 1.1E-05 45.0 4.9 32 29-60 171-202 (350)
488 TIGR01505 tartro_sem_red 2-hyd 89.7 0.41 8.8E-06 44.3 4.1 31 29-60 1-31 (291)
489 PRK12749 quinate/shikimate deh 89.7 0.59 1.3E-05 43.0 5.1 35 26-60 123-157 (288)
490 TIGR02440 FadJ fatty oxidation 89.7 0.5 1.1E-05 49.4 5.1 35 26-61 303-338 (699)
491 PRK12810 gltD glutamate syntha 89.7 0.53 1.2E-05 46.9 5.1 35 26-60 280-314 (471)
492 COG0287 TyrA Prephenate dehydr 89.5 0.64 1.4E-05 42.5 5.1 34 26-60 2-35 (279)
493 cd01484 E1-2_like Ubiquitin ac 89.5 0.62 1.4E-05 41.3 4.9 32 29-60 1-32 (234)
494 COG0169 AroE Shikimate 5-dehyd 89.4 0.65 1.4E-05 42.4 5.0 35 26-60 125-159 (283)
495 PRK08762 molybdopterin biosynt 89.4 0.56 1.2E-05 45.2 4.9 36 25-60 133-168 (376)
496 PRK11154 fadJ multifunctional 89.3 0.52 1.1E-05 49.4 5.0 34 26-60 308-342 (708)
497 PRK11559 garR tartronate semia 89.3 0.55 1.2E-05 43.6 4.7 32 28-60 3-34 (296)
498 PRK05597 molybdopterin biosynt 89.2 0.61 1.3E-05 44.5 4.9 36 25-60 26-61 (355)
499 TIGR01318 gltD_gamma_fam gluta 89.2 0.61 1.3E-05 46.4 5.1 36 26-61 281-316 (467)
500 TIGR00936 ahcY adenosylhomocys 89.1 0.6 1.3E-05 45.0 4.8 36 25-61 193-228 (406)
No 1
>PLN02676 polyamine oxidase
Probab=100.00 E-value=1.8e-54 Score=424.49 Aligned_cols=424 Identities=64% Similarity=1.077 Sum_probs=325.5
Q ss_pred CCCCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEEceeCCceeeecceeccCC-CCCCCHHHHHHHH
Q 013178 22 PTSPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNIGGHTIELGANWVNSG-GPKSSPSLQIAKK 100 (448)
Q Consensus 22 ~~~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~-~~~~~~~~~l~~~ 100 (448)
|..+..+||+|||||++||+||++|++.|.++|+|||+++++|||+.+.+.+|..+|+|++|++.. +...+++++++++
T Consensus 21 ~~~~~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~~~l~~~ 100 (487)
T PLN02676 21 MDAKPSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANFAGVSVELGANWVEGVGGPESNPIWELANK 100 (487)
T ss_pred hcccCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeecCCCeEEecCCEEEEcccCcccChHHHHHHh
Confidence 556678999999999999999999999997349999999999999999988999999999999753 2467889999999
Q ss_pred cCCceeecccccccceEEecCCccccHHHHHHHHHHHHHhHHHHHHHhhhccCCCCCCCcccHHHHHHhhcCCCCChHHH
Q 013178 101 IKLKTFYSDYANLTSNIYKQDGGLYQKHVVESAVRIAKTRDAFCTNLSKMLSSETTRDDDTSILGSQRLLKEVPMTPLEM 180 (448)
Q Consensus 101 lgl~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (448)
+|+.............+|..+|+.++..........+..+.++...+..... .. ..++.+..+...+.++......+.
T Consensus 101 ~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~s~~~~~~~~~~~~~~~~~~ 178 (487)
T PLN02676 101 LKLRTFYSDFDNLSSNIYKQDGGLYPKKVVQKSMKVADASDEFGENLSISLS-AK-KAVDISILTAQRLFGQVPKTPLEM 178 (487)
T ss_pred cCCceeecCccccceeEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc-cc-CCCCccHHHHHHHHhhCCCCHHHH
Confidence 9998776544433345666677776643333333333333333333322211 11 225666665555655543344444
Q ss_pred HHHHHhhccccCCCcccccccccCCCcccccCCCCeeeeeCCCchHHHHHHHHHhhhcccccccCCCceecCceeEEEEe
Q 013178 181 AIDYFFNDYEDAEPPRITSLKTTYPRNQLVDFGEDSYFVADPRGFESVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISY 260 (448)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~ 260 (448)
...++.....++.++...|+........+...+....+...++|+++|++.|++.+.+...+.+.+.+|++|++|++|+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~S~~~~~~~~~~~~~g~~~~~~~~~~G~~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~ 258 (487)
T PLN02676 179 VIDYYNYDYEFAEPPRVTSLKNTEPNPTFVDFGEDEYFVADPRGYESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISY 258 (487)
T ss_pred HHHHHhccceeccCccccchhhcCcccccccCCCceEEeecCCCHHHHHHHHHhhcccccccccCCCceecCCEeeEEEE
Confidence 44444433446777777777654433334445555555555789999999999987542111112367999999999999
Q ss_pred cCCcEEEEeCCCcEEEeCEEEEeechhhccCCCccccCCCCHHHHHHHhhcCCcceeEEEEEcCCCCCCCCCCcceEEEe
Q 013178 261 SKDKVTVKTEDGSVYQANYAIVSVSIGVLQSDFIEFTPNLPLWKKLAINNFNMAIYTKIFMKFPYKFWPTGPGTEFFIYA 340 (448)
Q Consensus 261 ~~~~v~V~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~p~l~~~~~~~~~~~~~~~~~~v~l~~~~~~w~~~~~~~~~~~~ 340 (448)
++++|.|++.+|++++||+||+|+|+++|++..+.|.|+||+.++++++++.++.+.|+++.|+++||+++....++++.
T Consensus 259 ~~~gV~V~~~~G~~~~a~~VIvtvPl~vLk~~~I~F~P~LP~~k~~ai~~l~~g~~~Kv~l~f~~~FW~~~~~~~~~~~~ 338 (487)
T PLN02676 259 SKNGVTVKTEDGSVYRAKYVIVSVSLGVLQSDLIKFKPPLPDWKIEAIYQFDMAVYTKIFLKFPYKFWPSGPGTEFFLYA 338 (487)
T ss_pred cCCcEEEEECCCCEEEeCEEEEccChHHhccCceEEeCCCCHHHHHHHHhCCceeeEEEEEEeCCCCCCCCCCceeeeee
Confidence 99999999999989999999999999999875689999999999999999999999999999999999975444555555
Q ss_pred cccCCcccccccccccCCCCcEEEEEecchhhhhhhcCChHHHHHHHHHHHHHHHhCCCCCCCceEeeccCCCCCCCCcc
Q 013178 341 HERRGYFPIWQHLENEMPGSNILFVTVTDEESRRVERQSDEKTKAEIMNNVLRKLFGNKIPEPQSIFVPRWWSNRFFNGS 420 (448)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~e~~~~~~~~~L~~~~g~~~~~~~~~~~~~W~~~~~~~g~ 420 (448)
+.+.+++++|.......++..+|++++.++.+..+..++++++++.++ ++|+++||...++|.++..++|..+||++|+
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~a~~~~~~s~e~~~~~vl-~~L~~~~g~~~~~p~~~~~~~W~~dp~s~Gs 417 (487)
T PLN02676 339 HERRGYYPFWQHLENEYPGSNVLFVTVTDEESRRIEQQPDSETKAEIM-EVLRKMFGPNIPEATDILVPRWWSNRFFKGS 417 (487)
T ss_pred ccccccchhhhhcccCCCCCCEEEEEechHHHHHHHhCCHHHHHHHHH-HHHHHHhCCCCCCcceEEecccCCCCCCCcc
Confidence 554455666755443445667888999888899999999999999999 9999999977778999999999999999999
Q ss_pred cCCCCCCCCHHHHHHHhcccCceEEccC
Q 013178 421 YSNWPNGFTQQSYKELKVSICKLHVGLT 448 (448)
Q Consensus 421 ~~~~~~g~~~~~~~~~~~p~~~i~fAG~ 448 (448)
|++++||+.....+.+++|.+||||||+
T Consensus 418 ys~~~pG~~~~~~~~L~~P~gri~FAGe 445 (487)
T PLN02676 418 YSNWPIGVSRYEFDQIRAPVGRVYFTGE 445 (487)
T ss_pred cCCCCCCCChhHHHHHhCCCCceEEecc
Confidence 9999999988888999999999999995
No 2
>PLN02268 probable polyamine oxidase
Probab=100.00 E-value=9.7e-47 Score=370.03 Aligned_cols=391 Identities=26% Similarity=0.416 Sum_probs=276.3
Q ss_pred CcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEEceeCCceeeecceeccCCCCCCCHHHHHHHHcCCceee
Q 013178 28 NSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNIGGHTIELGANWVNSGGPKSSPSLQIAKKIKLKTFY 107 (448)
Q Consensus 28 ~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~l~~~lgl~~~~ 107 (448)
.+|+|||||+|||+||+.|+++|+ +|+||||++|+|||++|.+..|+.+|+|++|++.. ..++++.++++++|++...
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~-~v~vlEa~~r~GGri~t~~~~g~~~d~G~~~i~~~-~~~~~~~~l~~~lgl~~~~ 78 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASF-KVTLLESRDRIGGRVHTDYSFGFPVDMGASWLHGV-CNENPLAPLIGRLGLPLYR 78 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCCCCCceeeecCcCCcccCCCCeeEecc-CCCchHHHHHHHhCCceEe
Confidence 489999999999999999999999 89999999999999999887889999999999861 1356799999999998654
Q ss_pred cccccc-------c-ceEEecCCccccHHHHHHHHHHHHHhHHHHHHHhhhccCCCCCCCcccHHHHHH-hhcC---CC-
Q 013178 108 SDYANL-------T-SNIYKQDGGLYQKHVVESAVRIAKTRDAFCTNLSKMLSSETTRDDDTSILGSQR-LLKE---VP- 174 (448)
Q Consensus 108 ~~~~~~-------~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~- 174 (448)
...... . ...+...+..++......+...+..+......... . ..++.++.++.+ +... +.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~s~~~~~~~~~~~~~~~~~ 152 (435)
T PLN02268 79 TSGDNSVLYDHDLESYALFDMDGNQVPQELVTKVGETFERILEETEKVRD---E---HEEDMSLLQAISIVLERHPELRL 152 (435)
T ss_pred ccCCccccccccccccceecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHh---c---cCCCcCHHHHHHHHhhhCccccc
Confidence 321110 0 01122223334433333332222222221111110 0 114566655421 1111 11
Q ss_pred CChHHHHHHHHhhcc--ccCCCcccccccccCCCcccccCCCCeeeeeCCCchHHHHHHHHHhhhcccccccCCCceecC
Q 013178 175 MTPLEMAIDYFFNDY--EDAEPPRITSLKTTYPRNQLVDFGEDSYFVADPRGFESVVHSVAKQFLSHRHQVIRDPRLKLN 252 (448)
Q Consensus 175 ~~~~~~~~~~~~~~~--~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~l~~~~~~~~~g~~i~~~ 252 (448)
....+.+..++.... .++.+++.+|+....... . ..+. .. ...+|++.++++|++. .+|++|
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~-~-~~g~-~~--~~~~G~~~l~~~l~~~-----------~~i~~~ 216 (435)
T PLN02268 153 EGLAHEVLQWYLCRMEGWFAADADTISLKSWDQEE-L-LEGG-HG--LMVRGYDPVINTLAKG-----------LDIRLN 216 (435)
T ss_pred chHHHHHHHHHHHHHHHHhCCChHhCchhhcCCcc-c-cCCC-ce--eecCCHHHHHHHHhcc-----------CceeCC
Confidence 112333333332211 256667776665421111 0 0121 11 2468999999999765 369999
Q ss_pred ceeEEEEecCCcEEEEeCCCcEEEeCEEEEeechhhccCCCccccCCCCHHHHHHHhhcCCcceeEEEEEcCCCCCCCCC
Q 013178 253 KVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSIGVLQSDFIEFTPNLPLWKKLAINNFNMAIYTKIFMKFPYKFWPTGP 332 (448)
Q Consensus 253 ~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~p~l~~~~~~~~~~~~~~~~~~v~l~~~~~~w~~~~ 332 (448)
++|++|+.++++|.|++.+|+++.||+||+|+|++++++..+.|.|+||+.+.+++++++|++..|+++.|+++||++.
T Consensus 217 ~~V~~i~~~~~~v~v~~~~g~~~~ad~VIva~P~~~l~~~~i~f~p~lp~~~~~ai~~~~~g~~~Kv~l~f~~~fw~~~- 295 (435)
T PLN02268 217 HRVTKIVRRYNGVKVTVEDGTTFVADAAIIAVPLGVLKANIIKFEPELPEWKEEAISDLGVGIENKIALHFDSVFWPNV- 295 (435)
T ss_pred CeeEEEEEcCCcEEEEECCCcEEEcCEEEEecCHHHHhcCcceecCCCCHHHHHHHHhCCccceeEEEEEeCCCCCCCC-
Confidence 9999999999999999999988999999999999999865578999999999999999999999999999999999861
Q ss_pred CcceEEEecccCCcccccccccccCCCCcEEEEEecchhhhhhhcCChHHHHHHHHHHHHHHHhCCCCCCCceEeeccCC
Q 013178 333 GTEFFIYAHERRGYFPIWQHLENEMPGSNILFVTVTDEESRRVERQSDEKTKAEIMNNVLRKLFGNKIPEPQSIFVPRWW 412 (448)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~e~~~~~~~~~L~~~~g~~~~~~~~~~~~~W~ 412 (448)
.++...... .....|.......++..+|++++.++.+..+.+++++++++.++ ++|+++||. .+.|..+..++|.
T Consensus 296 --~~~g~~~~~-~~~~~~~~~~~~~~g~~~l~~~~~g~~a~~~~~~~~~e~~~~v~-~~L~~~~~~-~~~p~~~~~~~W~ 370 (435)
T PLN02268 296 --EFLGVVAPT-SYGCSYFLNLHKATGHPVLVYMPAGRLARDIEKLSDEAAANFAM-SQLKKMLPD-ATEPVQYLVSRWG 370 (435)
T ss_pred --ceeeccCCC-CCCceEEEecccCCCCCEEEEEeccHHHHHHHhCCHHHHHHHHH-HHHHHHcCC-CCCccEEEecccC
Confidence 111111111 11112222112224567888888999999999999999999999 999999964 4568888999999
Q ss_pred CCCCCCcccCCCCCCCCHHHHHHHhcccCceEEccC
Q 013178 413 SNRFFNGSYSNWPNGFTQQSYKELKVSICKLHVGLT 448 (448)
Q Consensus 413 ~~~~~~g~~~~~~~g~~~~~~~~~~~p~~~i~fAG~ 448 (448)
.+||+.|+|++++||+....++.+++|.+||||||+
T Consensus 371 ~dp~~~G~~~~~~~g~~~~~~~~l~~p~~~l~FAGe 406 (435)
T PLN02268 371 SDPNSLGCYSYDLVGKPHDLYERLRAPVDNLFFAGE 406 (435)
T ss_pred CCCCCCccCCCCCCCCCHHHHHHHhCCCCCeEEeec
Confidence 999999999999999888888999999999999996
No 3
>PLN03000 amine oxidase
Probab=100.00 E-value=1.3e-46 Score=377.67 Aligned_cols=399 Identities=24% Similarity=0.390 Sum_probs=279.9
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEEceeC----CceeeecceeccCCCCCCCHHHHHHH
Q 013178 24 SPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNIG----GHTIELGANWVNSGGPKSSPSLQIAK 99 (448)
Q Consensus 24 ~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~~~~----g~~~d~G~~~~~~~~~~~~~~~~l~~ 99 (448)
.....+|+|||||++||+||+.|++.|+ +|+|+|+++++|||+.|.+.. +..+|+|++|++. ...+++..+++
T Consensus 181 ~~~~~~VvIIGaG~aGL~aA~~L~~~G~-~V~VlE~~~riGGRi~T~~~~g~~~~~~~DlGas~i~g--~~~npl~~L~~ 257 (881)
T PLN03000 181 QSSKSSVVIVGAGLSGLAAARQLMRFGF-KVTVLEGRKRPGGRVYTKKMEANRVGAAADLGGSVLTG--TLGNPLGIIAR 257 (881)
T ss_pred cCCCCCEEEECccHHHHHHHHHHHHCCC-cEEEEEccCcCCCCcceecccCCCCceEeecCCeEEeC--CCccHHHHHHH
Confidence 4567999999999999999999999999 799999999999999998864 4779999999999 35667788899
Q ss_pred HcCCceeecccccccceEEecCCccccHHHHHHHHHHHHHhHHHHHHHhhhccCCCCCCCcccHHHH-HHhhcCCCC--C
Q 013178 100 KIKLKTFYSDYANLTSNIYKQDGGLYQKHVVESAVRIAKTRDAFCTNLSKMLSSETTRDDDTSILGS-QRLLKEVPM--T 176 (448)
Q Consensus 100 ~lgl~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~ 176 (448)
++|++...... ...+|..+|+.++..........+..+.+....+........ .+.++... ..+.++... .
T Consensus 258 qlgl~l~~~~~---~~~ly~~~Gk~v~~~~~~~ve~~fn~lLd~~~~lr~l~~~~~---~D~SLg~aLe~~~~~~g~~~t 331 (881)
T PLN03000 258 QLGSSLYKVRD---KCPLYRVDGKPVDPDVDLKVEVAFNQLLDKASKLRQLMGDVS---MDVSLGAALETFRQVSGNDVA 331 (881)
T ss_pred HcCCceeecCC---CCeEEEeCCcCCchhhhhhHHHHHHHHHHHHHHHHHHhcccC---cCCcHHHHHHHHHHHHcccCC
Confidence 99998654321 234566688877643222211112222222222211111111 34444322 111111111 1
Q ss_pred -hHHHHHHHHhhccc--cCCCcccccccccCCCcccccCCCCeeeeeCCCchHHHHHHHHHhhhcccccccCCCceecCc
Q 013178 177 -PLEMAIDYFFNDYE--DAEPPRITSLKTTYPRNQLVDFGEDSYFVADPRGFESVVHSVAKQFLSHRHQVIRDPRLKLNK 253 (448)
Q Consensus 177 -~~~~~~~~~~~~~~--~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~l~~~~~~~~~g~~i~~~~ 253 (448)
....+..+.....+ .+.....+++....... ...+++... ..++|++.|+++|++.+ .|++|+
T Consensus 332 ~e~~~Ll~w~lanLE~~~as~ls~LSl~~wdqd~-~~e~~G~~~--~v~GG~~~LieaLa~~L-----------~I~Ln~ 397 (881)
T PLN03000 332 TEEMGLFNWHLANLEYANAGLVSKLSLAFWDQDD-PYDMGGDHC--FLPGGNGRLVQALAENV-----------PILYEK 397 (881)
T ss_pred HHHHHHHHHHHHHHhcccccCHHHHHHHHhhhcc-cccCCCceE--EeCCCHHHHHHHHHhhC-----------CcccCC
Confidence 11122233322222 22222222221111000 011223333 35799999999999985 399999
Q ss_pred eeEEEEecCCcEEEEeCCCcEEEeCEEEEeechhhccCCCccccCCCCHHHHHHHhhcCCcceeEEEEEcCCCCCCCCCC
Q 013178 254 VVRNISYSKDKVTVKTEDGSVYQANYAIVSVSIGVLQSDFIEFTPNLPLWKKLAINNFNMAIYTKIFMKFPYKFWPTGPG 333 (448)
Q Consensus 254 ~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~p~l~~~~~~~~~~~~~~~~~~v~l~~~~~~w~~~~~ 333 (448)
+|++|+.++++|.|++.++ +++||+||+|+|+++|++..+.|.|+||+.+.++++++.|+.+.||++.|+++||+...+
T Consensus 398 ~Vt~I~~~~dgV~V~~~~~-~~~AD~VIvTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~~G~l~KViL~Fd~~FW~~d~~ 476 (881)
T PLN03000 398 TVQTIRYGSNGVKVIAGNQ-VYEGDMVLCTVPLGVLKNGSIKFVPELPQRKLDCIKRLGFGLLNKVAMLFPYVFWSTDLD 476 (881)
T ss_pred cEEEEEECCCeEEEEECCc-EEEeceEEEcCCHHHHhhCceeeCCCCCHHHHHHHHcCCCcceEEEEEEeCCccccCCCC
Confidence 9999999999999987654 899999999999999995558999999999999999999999999999999999987322
Q ss_pred cceEEEec-ccCCcccccccccccCCCCcEEEEEecchhhhhhhcCChHHHHHHHHHHHHHHHhCC---CCCCCceEeec
Q 013178 334 TEFFIYAH-ERRGYFPIWQHLENEMPGSNILFVTVTDEESRRVERQSDEKTKAEIMNNVLRKLFGN---KIPEPQSIFVP 409 (448)
Q Consensus 334 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~e~~~~~~~~~L~~~~g~---~~~~~~~~~~~ 409 (448)
.-..+..+ ..++.+..|++.. ...+..+|++++.|+.+..+..++++|+++.++ ++|+++||+ ..++|..+.++
T Consensus 477 ~FG~l~~~~~~rg~~~~f~s~s-p~~G~pVLvafv~Gd~A~~le~lSdeE~ve~vl-~~Lrkifg~~~~~vp~Pv~~ivt 554 (881)
T PLN03000 477 TFGHLTEDPNYRGEFFLFYSYA-PVAGGPLLIALVAGEAAHKFETMPPTDAVTRVL-HILRGIYEPQGINVPDPLQTVCT 554 (881)
T ss_pred ceeEEecCCCCCceeEEEeCCC-CCCCCcEEEEEecCchhHHhhcCCHHHHHHHHH-HHHHHHhCccccccCCceEEEEc
Confidence 21122222 1122223333321 123556899999999999999999999999999 999999974 34678899999
Q ss_pred cCCCCCCCCcccCCCCCCCCHHHHHHHhccc--CceEEccC
Q 013178 410 RWWSNRFFNGSYSNWPNGFTQQSYKELKVSI--CKLHVGLT 448 (448)
Q Consensus 410 ~W~~~~~~~g~~~~~~~g~~~~~~~~~~~p~--~~i~fAG~ 448 (448)
+|..|||++|+|++++||+....++.+++|+ +||||||.
T Consensus 555 rW~~DPysrGSYS~~~pG~~~~~~d~LaePv~~GRIfFAGE 595 (881)
T PLN03000 555 RWGGDPFSLGSYSNVAVGASGDDYDILAESVGDGRLFFAGE 595 (881)
T ss_pred cCCCCCCCCccccCCCCCCchHHHHHHhCcCCCCcEEEeeh
Confidence 9999999999999999999888899999995 79999994
No 4
>PLN02568 polyamine oxidase
Probab=100.00 E-value=5.7e-46 Score=366.59 Aligned_cols=410 Identities=20% Similarity=0.295 Sum_probs=277.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcC-----CCcEEEEecCCCCCceEEEceeCCceeeecceeccCCCCCCCHHHHHHH
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAG-----YKDFIILEASSRVGGRLHKGNIGGHTIELGANWVNSGGPKSSPSLQIAK 99 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G-----~~~V~vlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~l~~ 99 (448)
.+.+||+|||||++||+||+.|++.| + +|+|||+++++|||+.+.+..|+.+|.|++|+++ ...+++.++++
T Consensus 3 ~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~-~v~v~E~~~~~GGr~~t~~~~g~~~d~G~~~~~g--~~~~~~~~l~~ 79 (539)
T PLN02568 3 AKKPRIVIIGAGMAGLTAANKLYTSSAANDMF-ELTVVEGGDRIGGRINTSEFGGERIEMGATWIHG--IGGSPVYKIAQ 79 (539)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhcccccCCc-eEEEEeCCCCcCCeEEEEEeCCeEEecCCceeCC--CCCCHHHHHHH
Confidence 34589999999999999999999988 7 7999999999999999999999999999999998 35788999999
Q ss_pred HcCCceeecccc-----cccceEEecCCccccHHHHHHHHHHHHHhHHHHHHHh---------------hhccCCCCCCC
Q 013178 100 KIKLKTFYSDYA-----NLTSNIYKQDGGLYQKHVVESAVRIAKTRDAFCTNLS---------------KMLSSETTRDD 159 (448)
Q Consensus 100 ~lgl~~~~~~~~-----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~ 159 (448)
++|+.....+.. ......+..+|..++..........+..+.+...... ...........
T Consensus 80 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 159 (539)
T PLN02568 80 EAGSLESDEPWECMDGFPDRPKTVAEGGFEVDPSIVESISTLFRGLMDDAQGKLIEPSEVDEVDFVKLAAKAARVCESGG 159 (539)
T ss_pred HhCCccccCcceecccccccceEEccCCcCCCHHHHHHHHHHHHHHHHHhhcccccccccccccccccchhccchhccCC
Confidence 999865432211 0112345567777664444433333332222211000 00000000001
Q ss_pred cccHHHHHH--hhcC---CCC---------ChH----HHHHHHHhhccccCCCcccccccccCCCcccccCCCCeeeeeC
Q 013178 160 DTSILGSQR--LLKE---VPM---------TPL----EMAIDYFFNDYEDAEPPRITSLKTTYPRNQLVDFGEDSYFVAD 221 (448)
Q Consensus 160 ~~~~~~~~~--~~~~---~~~---------~~~----~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 221 (448)
+.++.++.+ +.+. ... ... +.+..++............++.........+....+. ...+
T Consensus 160 ~~Sl~~fl~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ls~ls~~~~~~~~~~~g~--~~~i 237 (539)
T PLN02568 160 GGSVGSFLRRGLDAYWDSVSADEQIKGYGGWSRKLLEEAIFTMHENTQRTYTSADDLSTLDLAAESEYRMFPGE--EITI 237 (539)
T ss_pred CCcHHHHHHHHHHHHHhhcccchhhccccchhHHHHHHHHHHHHHHhhccccccccHhhccccccCcceecCCC--eEEE
Confidence 223333211 1111 100 011 1111222110001111121111111111111122222 2345
Q ss_pred CCchHHHHHHHHHhhhcccccccCCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeechhhccCCC----cccc
Q 013178 222 PRGFESVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSIGVLQSDF----IEFT 297 (448)
Q Consensus 222 ~~G~~~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~l~~~~----~~~~ 297 (448)
++|++.|+++|++.+. +..|++|++|++|+.++++|.|++.+|++++||+||+|+|+.+|++.. +.|.
T Consensus 238 ~gG~~~Li~~La~~L~--------~~~I~ln~~V~~I~~~~~~v~V~~~dG~~~~aD~VIvTvPl~vL~~~~~~~~i~F~ 309 (539)
T PLN02568 238 AKGYLSVIEALASVLP--------PGTIQLGRKVTRIEWQDEPVKLHFADGSTMTADHVIVTVSLGVLKAGIGEDSGLFS 309 (539)
T ss_pred CCcHHHHHHHHHhhCC--------CCEEEeCCeEEEEEEeCCeEEEEEcCCCEEEcCEEEEcCCHHHHhhccccccceec
Confidence 8999999999999983 457999999999999999999999999899999999999999998532 5799
Q ss_pred CCCCHHHHHHHhhcCCcceeEEEEEcCCCCCCCC-----CCcceEEEecccC----Cccccccc----ccccCCCCcEEE
Q 013178 298 PNLPLWKKLAINNFNMAIYTKIFMKFPYKFWPTG-----PGTEFFIYAHERR----GYFPIWQH----LENEMPGSNILF 364 (448)
Q Consensus 298 p~l~~~~~~~~~~~~~~~~~~v~l~~~~~~w~~~-----~~~~~~~~~~~~~----~~~~~~~~----~~~~~~~~~~l~ 364 (448)
|+||+.++++++++.|+.+.|+++.|+++||... .....+++...+. .....|.. ......+.++|+
T Consensus 310 P~LP~~k~~Ai~~l~~g~~~Ki~l~f~~~fW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~ 389 (539)
T PLN02568 310 PPLPDFKTDAISRLGFGVVNKLFVELSPRPDGSPEDVAKFPFLQMAFHRSDSEARHDKIPWWMRRTASICPIHKNSSVLL 389 (539)
T ss_pred CCCCHHHHHHHHhcCCceeeEEEEEecCCCCCcccccccccceeeeecccchhhhcccccchhhccccccccCCCCCEEE
Confidence 9999999999999999999999999999998641 1111122221110 01111211 111123567999
Q ss_pred EEecchhhhhhhcCChHHHHHHHHHHHHHHHhCCCC----------------------CCCceEeeccCCCCCCCCcccC
Q 013178 365 VTVTDEESRRVERQSDEKTKAEIMNNVLRKLFGNKI----------------------PEPQSIFVPRWWSNRFFNGSYS 422 (448)
Q Consensus 365 ~~~~~~~a~~~~~~~~~e~~~~~~~~~L~~~~g~~~----------------------~~~~~~~~~~W~~~~~~~g~~~ 422 (448)
+++.|+.|..+..++++++++.++ +.|+++||... +.|..+..++|..|||++|+|+
T Consensus 390 ~~~~G~~A~~~e~l~~~~~~~~~~-~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~t~W~~dp~~~GsYs 468 (539)
T PLN02568 390 SWFAGKEALELEKLSDEEIIRGVQ-TTLSSFLKRRVAGLGSQSHPLCNGGASSNDGSRWKFVKVLKSKWGTDPLFLGSYS 468 (539)
T ss_pred EEeccHHHHHHHcCCHHHHHHHHH-HHHHHHcCCcccCcccccccccccccccccccCCCCceEEeCCCCCCCccCCccC
Confidence 999999999999999999999999 99999997432 3578889999999999999999
Q ss_pred CCCCCCCHHHHHHHhcccC-------------ceEEccC
Q 013178 423 NWPNGFTQQSYKELKVSIC-------------KLHVGLT 448 (448)
Q Consensus 423 ~~~~g~~~~~~~~~~~p~~-------------~i~fAG~ 448 (448)
+.+||.....++.+++|++ +|||||.
T Consensus 469 ~~~~g~~~~~~~~La~P~~~~~~~~~~~~~~~~l~FAGE 507 (539)
T PLN02568 469 YVAVGSSGDDLDRMAEPLPRISDHDQAGGPPLQLLFAGE 507 (539)
T ss_pred CCcCCCChhHHHHHhCccccccccccccCCCccEEEeec
Confidence 9999998877899999974 7999994
No 5
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-47 Score=351.33 Aligned_cols=406 Identities=23% Similarity=0.278 Sum_probs=273.3
Q ss_pred CCCCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEEceeCCceeeecceeccCCCCCCCHHHHHHHHc
Q 013178 22 PTSPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNIGGHTIELGANWVNSGGPKSSPSLQIAKKI 101 (448)
Q Consensus 22 ~~~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~l~~~l 101 (448)
+.+++..||||||||+|||++|++|+++|+ +|+|||+++|+|||+.+.+..+.+.|+|++++.. .++.+.++++++
T Consensus 2 ~~p~~~~~viivGaGlaGL~AA~eL~kaG~-~v~ilEar~r~GGR~~t~r~~~~~~d~gG~~i~p---~~~~~l~~~k~~ 77 (450)
T COG1231 2 TLPPKTADVIIVGAGLAGLSAAYELKKAGY-QVQILEARDRVGGRSLTARAGGEYTDLGGQYINP---THDALLAYAKEF 77 (450)
T ss_pred CCCCCCCcEEEECCchHHHHHHHHHhhcCc-EEEEEeccCCcCceeEEEeccceeeccCCcccCc---cchhhhhhHHhc
Confidence 345789999999999999999999999999 7999999999999999988889999999999987 899999999999
Q ss_pred CCceeecccccccceEEecCCccccHHHHHHHHHHHHHhHHHHHHHhhhccCCCC-CCCcccHHHHHHhhcCCCCChHHH
Q 013178 102 KLKTFYSDYANLTSNIYKQDGGLYQKHVVESAVRIAKTRDAFCTNLSKMLSSETT-RDDDTSILGSQRLLKEVPMTPLEM 180 (448)
Q Consensus 102 gl~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 180 (448)
|++..+..........|...-+..+ .................+..+.......+ ...+....+.+.+..| .....+.
T Consensus 78 gv~~~~fi~~g~~~~~~~~~~~~~p-~~~~~~~~d~~~~~~~~~~~a~~~~~~~~~~t~~~~e~~~~~~~~W-~~~~~~~ 155 (450)
T COG1231 78 GVPLEPFIRDGDNVIGYVGSSKSTP-KRSLTAAADVRGLVAELEAKARSAGELDPGLTPEDRELDLESLAAW-KTSSLRG 155 (450)
T ss_pred CCCCCceeccCcccccccccccccc-hhccchhhhhcchhhhhhhhhhcccccCcccCcchhhhhhHHHHhh-hhccccc
Confidence 9987653332111111110001111 00000000000000000000000000000 0001111111222222 0000000
Q ss_pred HHHHHhhccccC-CCccccc-ccccCCCcc------cccCCCCeeeeeCCCchHHHHHHHHHhhhcccccccCCCceecC
Q 013178 181 AIDYFFNDYEDA-EPPRITS-LKTTYPRNQ------LVDFGEDSYFVADPRGFESVVHSVAKQFLSHRHQVIRDPRLKLN 252 (448)
Q Consensus 181 ~~~~~~~~~~~~-~~~~~~s-~~~~~~~~~------~~~~~~~~~~~~~~~G~~~l~~~l~~~l~~~~~~~~~g~~i~~~ 252 (448)
+..........+ .+....+ +........ ..............||++.+.+++++++ +..|.++
T Consensus 156 ~~~~~~a~~~~g~~~~~~~~~~~d~~~~~~~~~~~~~~~~e~~~~~~~~~GGmd~la~Afa~ql---------~~~I~~~ 226 (450)
T COG1231 156 LSRDPGARVSPGPIEPGDVSLLHDALPLRSASVVDRGIGGEIRTQMLQRLGGMDQLAEAFAKQL---------GTRILLN 226 (450)
T ss_pred cccCccceeccCCCCcccccchhhhhhhhhhhhccccccccccchhhccCccHHHHHHHHHHHh---------hceEEec
Confidence 000000000011 1111111 111111110 1111111222233499999999999996 7789999
Q ss_pred ceeEEEEecCCcEEEEeCCCcEEEeCEEEEeechhhccCCCccccCCCCHHHHHHHhhcCCcceeEEEEEcCCCCCCCCC
Q 013178 253 KVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSIGVLQSDFIEFTPNLPLWKKLAINNFNMAIYTKIFMKFPYKFWPTGP 332 (448)
Q Consensus 253 ~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~p~l~~~~~~~~~~~~~~~~~~v~l~~~~~~w~~~~ 332 (448)
++|++|.+++++|+|++.+..++.+|+||||+|+.++.+ +.|+|.+|+..+++++.++|.+..|+.+.|+++||++..
T Consensus 227 ~~V~rI~q~~~gV~Vt~~~~~~~~ad~~i~tiPl~~l~q--I~f~P~l~~~~~~a~~~~~y~~~~K~~v~f~rpFWee~~ 304 (450)
T COG1231 227 EPVRRIDQDGDGVTVTADDVGQYVADYVLVTIPLAILGQ--IDFAPLLPAEYKQAAKGVPYGSATKIGVAFSRPFWEEAG 304 (450)
T ss_pred CceeeEEEcCCeEEEEeCCcceEEecEEEEecCHHHHhh--cccCCCCCHHHHHHhcCcCcchheeeeeecCchhhhhcc
Confidence 999999999999999999955999999999999999997 899999999999999999999999999999999999822
Q ss_pred -CcceEEEecccCCcccccccccccCCCCcEEEEEe-cchhhhhhhcCChHHHHHHHHHHHHHHHhCCCCCCCceE-eec
Q 013178 333 -GTEFFIYAHERRGYFPIWQHLENEMPGSNILFVTV-TDEESRRVERQSDEKTKAEIMNNVLRKLFGNKIPEPQSI-FVP 409 (448)
Q Consensus 333 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~a~~~~~~~~~e~~~~~~~~~L~~~~g~~~~~~~~~-~~~ 409 (448)
.++. ++.+ ....-+++++.....+..||++++ .++.+..|..++++++++.++ ..+.++||....++.+. ...
T Consensus 305 ~l~G~-~~tD--~~~~~i~~~s~~~~~G~gVl~g~~~~g~~A~~~~~~~~~~r~~~vl-~~l~~~~g~~a~~~f~~~~~~ 380 (450)
T COG1231 305 ILGGE-SLTD--LGLGFISYPSAPFADGPGVLLGSYAFGDDALVIDALPEAERRQKVL-ARLAKLFGDEAADPFDYGASV 380 (450)
T ss_pred cCCce-Eeec--CCcceEecCccccCCCceEEEeeeeccccceeEecCCHHHHHHHHH-HhHhhhCChhhccccccceee
Confidence 2222 2222 233334444333345678888865 599999999999999999999 99999999777777666 899
Q ss_pred cCCCCCCCCcccCCCCCCCCHHHHHHHhcccCceEEccC
Q 013178 410 RWWSNRFFNGSYSNWPNGFTQQSYKELKVSICKLHVGLT 448 (448)
Q Consensus 410 ~W~~~~~~~g~~~~~~~g~~~~~~~~~~~p~~~i~fAG~ 448 (448)
+|+.+||+.|++..+.||+..++++.+.+|++|||||||
T Consensus 381 ~W~~dpwt~G~~aa~~~g~~~~~~~~l~~p~gRIh~Agt 419 (450)
T COG1231 381 DWSKDPWTLGGTAAYPPGQRTKLYPTLPAPHGRIHFAGT 419 (450)
T ss_pred ecccCCcCCccccccCCcccccccccccCCCCceEEeee
Confidence 999999999999999999999999999999999999995
No 6
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=100.00 E-value=1.5e-46 Score=344.51 Aligned_cols=416 Identities=25% Similarity=0.431 Sum_probs=292.0
Q ss_pred CCCCCCCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEEceeCCceeeecceeccCCCCCCCHHHHHH
Q 013178 19 VIAPTSPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNIGGHTIELGANWVNSGGPKSSPSLQIA 98 (448)
Q Consensus 19 ~~~~~~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~l~ 98 (448)
.+........+|+|||||+|||+||.+|-+.|..+|+|||+++|+|||+.|..+.+..+|+||+|+|+ ...+++++++
T Consensus 13 ~~~~~~~~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ti~~~d~~ielGAqwihG--~~gNpVY~la 90 (498)
T KOG0685|consen 13 GSGLKARGNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHTIPFADGVIELGAQWIHG--EEGNPVYELA 90 (498)
T ss_pred chhhhccCCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEeeEEcCCCeEeecceeecC--CCCChHHHHH
Confidence 34455667789999999999999999999887769999999999999999999998899999999999 6889999999
Q ss_pred HHcC-Cceeecccc-cccceEEecCCccccHHHHHHHHHHHHHhHHHHHHHhhhccCCCCCCCcccHHHHH--HhhcC--
Q 013178 99 KKIK-LKTFYSDYA-NLTSNIYKQDGGLYQKHVVESAVRIAKTRDAFCTNLSKMLSSETTRDDDTSILGSQ--RLLKE-- 172 (448)
Q Consensus 99 ~~lg-l~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-- 172 (448)
+++| +........ ......+..+|+.++......+...........+. .......-++..+. .+.+.
T Consensus 91 ~~~g~~~~~~~tg~~~~~~~~~~~~g~~V~~~~~~~~~~~~~~~~~~~r~-------~~~~~~~~SvG~~ln~~~~~~~~ 163 (498)
T KOG0685|consen 91 KEYGDLKLLEVTGPAYVDNFHTRSNGEVVPEELLDELNEITVTLSDKLRE-------AEIAHDEGSVGEYLNSEFWDELR 163 (498)
T ss_pred HHhCccceeccCCccccceeEEEecCccCcHHHHHHHHHHHHhhhhhccc-------ccccCccccHHHHHHHHHHHHhc
Confidence 9998 332222111 11122334577777755544443333211111111 00001222222221 11111
Q ss_pred CCCC------hHHHHHHH-Hhhcc--ccCCCcccccccccCCCcccccCCCCeeeeeCCCchHHHHHHHHHhhhcccccc
Q 013178 173 VPMT------PLEMAIDY-FFNDY--EDAEPPRITSLKTTYPRNQLVDFGEDSYFVADPRGFESVVHSVAKQFLSHRHQV 243 (448)
Q Consensus 173 ~~~~------~~~~~~~~-~~~~~--~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~l~~~~~~~ 243 (448)
.++. ..+.++.. +.... ..+.+.+++|+.... .|...++.......+.|+..+.+.|.+.+.+...+-
T Consensus 164 ~~e~~~~~k~l~~~~~~~~~k~e~~~~~~d~l~evs~~~~~---ey~~~~ge~~~~~~~kGy~~iL~~l~~~~p~~~i~~ 240 (498)
T KOG0685|consen 164 GPENPEIDKTLAEEILNVYFKVECSITGADNLSEVSLRALL---EYTECPGEELLIWNKKGYKRILKLLMAVIPAQNIEL 240 (498)
T ss_pred cccccchhhHHHHHHHHHHHHHheeeeccCchhhhhhhhcc---ceeecCchhhheechhHHHHHHHHHhccCCCcchhc
Confidence 1111 11222222 22222 234445555554332 233444434455568899999999999876532221
Q ss_pred cCCCceecCceeEEEEecC-CcEEEEeCCCcEEEeCEEEEeechhhccCCC-ccccCCCCHHHHHHHhhcCCcceeEEEE
Q 013178 244 IRDPRLKLNKVVRNISYSK-DKVTVKTEDGSVYQANYAIVSVSIGVLQSDF-IEFTPNLPLWKKLAINNFNMAIYTKIFM 321 (448)
Q Consensus 244 ~~g~~i~~~~~V~~I~~~~-~~v~V~~~~g~~~~ad~VI~a~p~~~l~~~~-~~~~p~l~~~~~~~~~~~~~~~~~~v~l 321 (448)
..-.+++++++|.+|...+ +.|.|++.||+.+.|||||||+|+.+|++.. ..|.|+||.+++++|+++.++.+.|++|
T Consensus 241 ~~~~~~~~~~rv~~I~~~~~~~v~l~c~dg~v~~adhVIvTvsLGvLk~~h~~lF~P~LP~~K~~AIe~lgfGtv~KiFL 320 (498)
T KOG0685|consen 241 GLWKRIHLNTRVENINWKNTGEVKLRCSDGEVFHADHVIVTVSLGVLKEQHHKLFVPPLPAEKQRAIERLGFGTVNKIFL 320 (498)
T ss_pred CchhhhcccccceeeccCCCCcEEEEEeCCcEEeccEEEEEeechhhhhhhhhhcCCCCCHHHHHHHHhccCCccceEEE
Confidence 1235677779999999886 5699999999999999999999999998632 3589999999999999999999999999
Q ss_pred EcCCCCCCCCCCcceEEEeccc----CCccccccc----ccccCCCCcEEEEEecchhhhhhhcCChHHHHHHHHHHHHH
Q 013178 322 KFPYKFWPTGPGTEFFIYAHER----RGYFPIWQH----LENEMPGSNILFVTVTDEESRRVERQSDEKTKAEIMNNVLR 393 (448)
Q Consensus 322 ~~~~~~w~~~~~~~~~~~~~~~----~~~~~~~~~----~~~~~~~~~~l~~~~~~~~a~~~~~~~~~e~~~~~~~~~L~ 393 (448)
.|+++||+.+..+-.+++.+++ +..-..|.. +.......++|++++.|..++.+.+++|||+.+.+. ..|+
T Consensus 321 E~E~pfwp~~~~~i~~lw~~e~l~e~r~~~~~w~~~~~~f~~v~~~~~vL~gWiaG~~~~~me~lsdEev~e~~~-~~lr 399 (498)
T KOG0685|consen 321 EFEEPFWPSDWNGIQLLWLDEDLEELRSTLDAWEEDIMGFQPVSWAPNVLLGWIAGREARHMETLSDEEVLEGLT-KLLR 399 (498)
T ss_pred EccCCCCCCCCceeEEEEecCcHHHHhhhhHHHHhhceEEEEcCcchhhhheeccCCcceehhhCCHHHHHHHHH-HHHH
Confidence 9999999986555455565544 000012221 112223348999999999999999999999999999 9999
Q ss_pred HHhC-CCCCCCceEeeccCCCCCCCCcccCCCCCCCCHHHHHHHhccc--------CceEEcc
Q 013178 394 KLFG-NKIPEPQSIFVPRWWSNRFFNGSYSNWPNGFTQQSYKELKVSI--------CKLHVGL 447 (448)
Q Consensus 394 ~~~g-~~~~~~~~~~~~~W~~~~~~~g~~~~~~~g~~~~~~~~~~~p~--------~~i~fAG 447 (448)
++++ ..+|+|+.+..+.|..+||++|+|++.++|.....-..+..|. ..|.|||
T Consensus 400 ~fl~n~~iP~p~kilRs~W~snp~frGSYSY~svgs~~~d~~~~a~p~p~~~~~~~p~I~FAG 462 (498)
T KOG0685|consen 400 KFLKNPEIPKPKKILRSQWISNPFFRGSYSYRSVGSDGSDTGALALPLPLTLVTGRPQILFAG 462 (498)
T ss_pred HhcCCCCCCCchhhhhhcccCCCccCceeeEeeccccccccchhhccCCccccCCCceEEEcc
Confidence 9998 7789999999999999999999999999997655455555554 3799998
No 7
>PLN02529 lysine-specific histone demethylase 1
Probab=100.00 E-value=2.2e-45 Score=368.54 Aligned_cols=399 Identities=25% Similarity=0.384 Sum_probs=282.8
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEEceeC--C--ceeeecceeccCCCCCCCHHHHHHH
Q 013178 24 SPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNIG--G--HTIELGANWVNSGGPKSSPSLQIAK 99 (448)
Q Consensus 24 ~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~~~~--g--~~~d~G~~~~~~~~~~~~~~~~l~~ 99 (448)
....+||+|||||++||+||..|+++|+ +|+|||+++++|||+.|...+ | ..+|+|++|+++ ...+++..+++
T Consensus 157 ~~~~~~v~viGaG~aGl~aA~~l~~~g~-~v~v~E~~~~~GG~~~t~~~~~~g~~~~~DlGaswi~g--~~~npl~~la~ 233 (738)
T PLN02529 157 EGTEGSVIIVGAGLAGLAAARQLLSFGF-KVVVLEGRNRPGGRVYTQKMGRKGQFAAVDLGGSVITG--IHANPLGVLAR 233 (738)
T ss_pred ccCCCCEEEECcCHHHHHHHHHHHHcCC-cEEEEecCccCcCceeeecccCCCCceEEecCCeeccc--cccchHHHHHH
Confidence 4567899999999999999999999999 799999999999999998874 3 378999999999 45667899999
Q ss_pred HcCCceeecccccccceEEecCCccccHHHHHHHHHHHHHhHHHHHHHhhhccCCCCCCCcccHHHHHH-hhcCCC--C-
Q 013178 100 KIKLKTFYSDYANLTSNIYKQDGGLYQKHVVESAVRIAKTRDAFCTNLSKMLSSETTRDDDTSILGSQR-LLKEVP--M- 175 (448)
Q Consensus 100 ~lgl~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~- 175 (448)
++|++..... ....+|..+|..++..........+..+.+....+....... .+++++.++.. +.+... .
T Consensus 234 ~lgl~~~~~~---~~~~~~~~~G~~v~~~~~~~~~~~~~~~l~~~~~l~~~~~~~---~~d~Sl~~~le~~~~~~~~~~t 307 (738)
T PLN02529 234 QLSIPLHKVR---DNCPLYKPDGALVDKEIDSNIEFIFNKLLDKVTELRQIMGGF---ANDISLGSVLERLRQLYGVARS 307 (738)
T ss_pred HhCCCccccC---CCceEEeCCCcCcchhhhhhHHHHHHHHHHHHHHHHHhcccC---ccCCCHHHHHHHHHhhhccCCC
Confidence 9999865432 223466668877653322221112222222222222222211 25666666532 221111 1
Q ss_pred ChHHHHHHHHhhccc--cCCCcccccccccCCCcccccCCCCeeeeeCCCchHHHHHHHHHhhhcccccccCCCceecCc
Q 013178 176 TPLEMAIDYFFNDYE--DAEPPRITSLKTTYPRNQLVDFGEDSYFVADPRGFESVVHSVAKQFLSHRHQVIRDPRLKLNK 253 (448)
Q Consensus 176 ~~~~~~~~~~~~~~~--~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~l~~~~~~~~~g~~i~~~~ 253 (448)
.....++.++..... .+.....+|+....... ...+++.. ..+.+|++.|+++|++.+ .|++|+
T Consensus 308 ~~e~~ll~~~~~~le~a~~~~~s~LSl~~~~~~~-~~e~~G~~--~~i~GG~~~Li~aLA~~L-----------~IrLnt 373 (738)
T PLN02529 308 TEERQLLDWHLANLEYANAGCLSDLSAAYWDQDD-PYEMGGDH--CFLAGGNWRLINALCEGV-----------PIFYGK 373 (738)
T ss_pred HHHHHHHHHHHHHhceecCCChHHhhhhHhhhcc-ccccCCce--EEECCcHHHHHHHHHhcC-----------CEEcCC
Confidence 122234444433222 33333334433221111 11223333 335899999999999864 599999
Q ss_pred eeEEEEecCCcEEEEeCCCcEEEeCEEEEeechhhccCCCccccCCCCHHHHHHHhhcCCcceeEEEEEcCCCCCCCCCC
Q 013178 254 VVRNISYSKDKVTVKTEDGSVYQANYAIVSVSIGVLQSDFIEFTPNLPLWKKLAINNFNMAIYTKIFMKFPYKFWPTGPG 333 (448)
Q Consensus 254 ~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~p~l~~~~~~~~~~~~~~~~~~v~l~~~~~~w~~~~~ 333 (448)
+|++|+.++++|+|++. +++++||+||+|+|+++|++..+.|.|+||+.+.++++++.|+++.||++.|+++||+...+
T Consensus 374 ~V~~I~~~~dGVtV~t~-~~~~~AD~VIVTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~yG~v~KV~L~F~~~FW~~~~~ 452 (738)
T PLN02529 374 TVDTIKYGNDGVEVIAG-SQVFQADMVLCTVPLGVLKKRTIRFEPELPRRKLAAIDRLGFGLLNKVAMVFPSVFWGEELD 452 (738)
T ss_pred ceeEEEEcCCeEEEEEC-CEEEEcCEEEECCCHHHHHhccccCCCCCCHHHHHHHHcCCCceeEEEEEEeCCccccCCCC
Confidence 99999999999999864 44899999999999999986558899999999999999999999999999999999986322
Q ss_pred cceEEEe-cccCCcccccccccccCCCCcEEEEEecchhhhhhhcCChHHHHHHHHHHHHHHHhCC---CCCCCceEeec
Q 013178 334 TEFFIYA-HERRGYFPIWQHLENEMPGSNILFVTVTDEESRRVERQSDEKTKAEIMNNVLRKLFGN---KIPEPQSIFVP 409 (448)
Q Consensus 334 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~e~~~~~~~~~L~~~~g~---~~~~~~~~~~~ 409 (448)
.-.++.. ....+.+..|++. ...++..+|++++.|+.+..+..++++++++.++ ++|+++||+ ..++|..+..+
T Consensus 453 ~fG~l~~~~~~~g~~~~~~~~-~~~~ggpvLvafv~G~~A~~le~lsdeeii~~vl-~~L~~ifgp~~~~vp~Pi~~v~t 530 (738)
T PLN02529 453 TFGCLNESSNKRGEFFLFYGY-HTVSGGPALVALVAGEAAQRFENTDPSTLLHRVL-SVLRGIYNPKGINVPDPIQTICT 530 (738)
T ss_pred ceEEEeccCCCCceEEEEecC-CCCCCCCEEEEEECchhhHHHhcCCHHHHHHHHH-HHHHHHhCccccccCCceEEEEc
Confidence 1111111 1122222233322 1223557899999999999999999999999999 999999974 34678889999
Q ss_pred cCCCCCCCCcccCCCCCCCCHHHHHHHhccc-CceEEccC
Q 013178 410 RWWSNRFFNGSYSNWPNGFTQQSYKELKVSI-CKLHVGLT 448 (448)
Q Consensus 410 ~W~~~~~~~g~~~~~~~g~~~~~~~~~~~p~-~~i~fAG~ 448 (448)
+|..+||++|+|++++||.....++.+++|. +||||||+
T Consensus 531 ~W~~DP~s~GsYS~~~~g~~~~d~~~La~pv~grL~FAGE 570 (738)
T PLN02529 531 RWGSDPLSYGSYSHVRVQSSGSDYDILAESVSGRLFFAGE 570 (738)
T ss_pred cCCcCCCCCCCcccCCCCCchhHHHHHhCCCCCCEEEEEH
Confidence 9999999999999999887665568888885 99999995
No 8
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=100.00 E-value=7.1e-45 Score=366.03 Aligned_cols=400 Identities=23% Similarity=0.395 Sum_probs=279.7
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEEceeCCc----eeeecceeccCCCCCCCHHHHHHHH
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNIGGH----TIELGANWVNSGGPKSSPSLQIAKK 100 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~~~~g~----~~d~G~~~~~~~~~~~~~~~~l~~~ 100 (448)
.+..+|+|||||++||+||+.|++.|+ +|+|+|+++++|||+.+....|. .+|+|++|+++ ...+++..++++
T Consensus 236 ~~~~~v~IiGaG~aGl~aA~~L~~~g~-~v~v~E~~~r~GGr~~t~~~~g~~~~~~~d~Gas~i~g--~~~npl~~l~~~ 312 (808)
T PLN02328 236 VEPANVVVVGAGLAGLVAARQLLSMGF-KVVVLEGRARPGGRVKTMKMKGDGVVAAADLGGSVLTG--INGNPLGVLARQ 312 (808)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCC-cEEEEeccccCCCcccccccCCCCcceeccCCceeecC--CCccHHHHHHHH
Confidence 357899999999999999999999999 79999999999999999887643 68999999998 355678899999
Q ss_pred cCCceeecccccccceEEecCCccccHHHHHHHHHHHHHhHHHHHHHhhhccCCCCCCCcccHHHHHHhhc-C--CCCCh
Q 013178 101 IKLKTFYSDYANLTSNIYKQDGGLYQKHVVESAVRIAKTRDAFCTNLSKMLSSETTRDDDTSILGSQRLLK-E--VPMTP 177 (448)
Q Consensus 101 lgl~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~ 177 (448)
+|++...... ...+|..+|+.++..........+..+.+....+...+.... ...+.++..+.+... . .....
T Consensus 313 lgl~~~~~~~---~~~~~~~dG~~~~~~~~~~v~~~f~~lL~~~~klr~~~~~~~-~~~D~SLg~~le~~~~~~~~~~~~ 388 (808)
T PLN02328 313 LGLPLHKVRD---ICPLYLPDGKAVDAEIDSKIEASFNKLLDRVCKLRQAMIEEV-KSVDVNLGTALEAFRHVYKVAEDP 388 (808)
T ss_pred cCCceEecCC---CceEEeCCCcCcchhhhhhHHHHHHHHHHHHHHHHHhhhhcc-cccCcCHHHHHHHHhhhhccCCCH
Confidence 9998654321 233555678766533222221222222222222221111111 113455555433211 1 11122
Q ss_pred H-HHHHHHHhhccc--cCCCcccccccccCCCcccccCCCCeeeeeCCCchHHHHHHHHHhhhcccccccCCCceecCce
Q 013178 178 L-EMAIDYFFNDYE--DAEPPRITSLKTTYPRNQLVDFGEDSYFVADPRGFESVVHSVAKQFLSHRHQVIRDPRLKLNKV 254 (448)
Q Consensus 178 ~-~~~~~~~~~~~~--~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~l~~~~~~~~~g~~i~~~~~ 254 (448)
. ..+..+.....+ .+.....+++...... .....++. ...+++|++.|+++|++.+ .|++|++
T Consensus 389 ~e~~Ll~w~lanlE~~~gs~ls~LSl~~w~qd-~~~e~~G~--~~~v~GG~~~Li~aLa~~L-----------~I~ln~~ 454 (808)
T PLN02328 389 QERMLLNWHLANLEYANASLMSNLSMAYWDQD-DPYEMGGD--HCFIPGGNDTFVRELAKDL-----------PIFYERT 454 (808)
T ss_pred HHHHHHHHHHHHHhccchhhHHHHHhhhhhcc-ccccCCCe--EEEECCcHHHHHHHHHhhC-----------CcccCCe
Confidence 2 233334332222 2222333332211110 01112222 2345899999999999985 3999999
Q ss_pred eEEEEecCCcEEEEeCCCcEEEeCEEEEeechhhccCCCccccCCCCHHHHHHHhhcCCcceeEEEEEcCCCCCCCCCCc
Q 013178 255 VRNISYSKDKVTVKTEDGSVYQANYAIVSVSIGVLQSDFIEFTPNLPLWKKLAINNFNMAIYTKIFMKFPYKFWPTGPGT 334 (448)
Q Consensus 255 V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~p~l~~~~~~~~~~~~~~~~~~v~l~~~~~~w~~~~~~ 334 (448)
|++|...+++|.| +.+|++++||+||+|+|+++|++..+.|.|+||+.+.++++++.|+++.||++.|+++||+...+.
T Consensus 455 V~~I~~~~dgV~V-~~~G~~~~AD~VIvTvPl~vLk~~~I~F~P~LP~~K~~AI~~l~yG~~~KV~L~F~~~FW~~~~d~ 533 (808)
T PLN02328 455 VESIRYGVDGVIV-YAGGQEFHGDMVLCTVPLGVLKKGSIEFYPELPQRKKDAIQRLGYGLLNKVALLFPYNFWGGEIDT 533 (808)
T ss_pred eEEEEEcCCeEEE-EeCCeEEEcCEEEECCCHHHHhhcccccCCCCCHHHHHHHHcCCCcceEEEEEEeCCccccCCCCc
Confidence 9999999888888 456779999999999999999865578999999999999999999999999999999999863221
Q ss_pred ceEEEec-ccCCcccccccccccCCCCcEEEEEecchhhhhhhcCChHHHHHHHHHHHHHHHhCC---CCCCCceEeecc
Q 013178 335 EFFIYAH-ERRGYFPIWQHLENEMPGSNILFVTVTDEESRRVERQSDEKTKAEIMNNVLRKLFGN---KIPEPQSIFVPR 410 (448)
Q Consensus 335 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~e~~~~~~~~~L~~~~g~---~~~~~~~~~~~~ 410 (448)
-..+..+ ...+.+..|++.. ...+..+|+++++|+.+..+.+++++++++.++ ++|+++||+ ..++|....+++
T Consensus 534 fG~l~~d~s~rG~~~lf~s~s-~~~G~~vLvafv~G~~A~~~e~lsdeE~v~~vL-~~Lr~ifgp~~~~vp~P~~~~vtr 611 (808)
T PLN02328 534 FGHLTEDPSMRGEFFLFYSYS-SVSGGPLLIALVAGDAAVKFETLSPVESVKRVL-QILRGIFHPKGIVVPDPVQAVCTR 611 (808)
T ss_pred eEEEeecCCCCceEEEEecCC-CCCCCcEEEEEecChhhHHHhcCCHHHHHHHHH-HHHHHHhCcccccccCcceEEEec
Confidence 1122221 1122222232221 124567999999999999999999999999999 999999975 246788999999
Q ss_pred CCCCCCCCcccCCCCCCCCHHHHHHHhccc--CceEEccC
Q 013178 411 WWSNRFFNGSYSNWPNGFTQQSYKELKVSI--CKLHVGLT 448 (448)
Q Consensus 411 W~~~~~~~g~~~~~~~g~~~~~~~~~~~p~--~~i~fAG~ 448 (448)
|..+||++|+|++++||+....++.+++|. +||||||+
T Consensus 612 W~~DP~s~GSYS~~~pG~~~~~~~~LaePv~~GRL~FAGE 651 (808)
T PLN02328 612 WGKDCFTYGSYSYVAVGSSGDDYDILAESVGDGRVFFAGE 651 (808)
T ss_pred CCCCCCcCCCCCCCCCCCchhHHHHHhccCCCCCEEEEEh
Confidence 999999999999999998877789999985 79999995
No 9
>PLN02976 amine oxidase
Probab=100.00 E-value=2.8e-43 Score=361.82 Aligned_cols=401 Identities=24% Similarity=0.373 Sum_probs=278.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEEcee-CCceeeecceeccCCC------CCCCHHHHH
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNI-GGHTIELGANWVNSGG------PKSSPSLQI 97 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~~~-~g~~~d~G~~~~~~~~------~~~~~~~~l 97 (448)
...++|+|||||++|+++|+.|++.|+ +|+|||+++++||++.+... .++.+|+|++|+++.. ...+++..+
T Consensus 691 ~~~~dV~IIGAG~AGLaAA~~L~~~G~-~V~VlEa~~~vGGri~t~~~~~g~pvDlGas~i~G~~~nv~~~r~~np~~~l 769 (1713)
T PLN02976 691 VDRKKIIVVGAGPAGLTAARHLQRQGF-SVTVLEARSRIGGRVYTDRSSLSVPVDLGASIITGVEADVATERRPDPSSLI 769 (1713)
T ss_pred CCCCcEEEECchHHHHHHHHHHHHCCC-cEEEEeeccCCCCceeeccccCCceeccCcEEEecccccccccccccHHHHH
Confidence 346899999999999999999999999 79999999999999999764 5889999999998731 012445557
Q ss_pred HHHcCCceeecccccccceEEe-cCCccccHHHHHHHHHHHHHhHHHHHHHhhhccCCCCCCCcccHHHHHHh-------
Q 013178 98 AKKIKLKTFYSDYANLTSNIYK-QDGGLYQKHVVESAVRIAKTRDAFCTNLSKMLSSETTRDDDTSILGSQRL------- 169 (448)
Q Consensus 98 ~~~lgl~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 169 (448)
++++|+......... ..|. ..|..++......+...+..+.+............ ..+.++.++...
T Consensus 770 a~qlGl~l~~~~~~~---~~yd~~~G~~V~~e~~~~v~~~fn~lld~~~~~~~~~g~~---a~d~SLgd~Le~~~~~~~~ 843 (1713)
T PLN02976 770 CAQLGLELTVLNSDC---PLYDVVTGEKVPADLDEALEAEYNSLLDDMVLLVAQKGEH---AMKMSLEDGLEYALKRRRM 843 (1713)
T ss_pred HHhcCCccccccCCC---ceeEccCCcCCCHHHHHHHHHHHHHHHHHHHHHHhhcccC---ccCCCHHHHHHHHHhhhhc
Confidence 999999865433221 1233 46777765544443333333222221111000000 012222221110
Q ss_pred -------------------h--------c-CCCC--------ChHHHHHHHHhhcc--ccCCCcccccccccCCCccccc
Q 013178 170 -------------------L--------K-EVPM--------TPLEMAIDYFFNDY--EDAEPPRITSLKTTYPRNQLVD 211 (448)
Q Consensus 170 -------------------~--------~-~~~~--------~~~~~~~~~~~~~~--~~~~~~~~~s~~~~~~~~~~~~ 211 (448)
. . ...+ .....++.+..... .++.++...|+........+..
T Consensus 844 ~~~~~~~~~~~~~~~~~~l~~~~~~~v~G~~~er~s~~~~Ls~~er~lL~w~~~~lE~~~aa~L~eVSl~~~~qd~~y~~ 923 (1713)
T PLN02976 844 PRPGVDIDETELGNAADDLYDSASTGVDGGHCEKESKEDVLSPLERRVMNWHFAHLEYGCAALLKEVSLPYWNQDDVYGG 923 (1713)
T ss_pred cccccccchhhcccchhhhhhhhhhcccccchhhhhHHHhhCHHHHHHHHHHHHhhcccccCCHHHhhhhhhhccccccc
Confidence 0 0 0000 00111223333222 2355566666543222222333
Q ss_pred CCCCeeeeeCCCchHHHHHHHHHhhhcccccccCCCceecCceeEEEEec----------CCcEEEEeCCCcEEEeCEEE
Q 013178 212 FGEDSYFVADPRGFESVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYS----------KDKVTVKTEDGSVYQANYAI 281 (448)
Q Consensus 212 ~~~~~~~~~~~~G~~~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~----------~~~v~V~~~~g~~~~ad~VI 281 (448)
+++..+ .+++|++.|+++|++.+ .|++|++|++|... +++|.|++.+|++++||+||
T Consensus 924 fgG~~~--rIkGGYqqLIeALAe~L-----------~IrLNtpVtrId~s~~d~~~~~s~~dGVtVtTsDGetftADaVI 990 (1713)
T PLN02976 924 FGGAHC--MIKGGYSNVVESLAEGL-----------DIHLNHVVTDVSYGSKDAGASGSSRKKVKVSTSNGSEFLGDAVL 990 (1713)
T ss_pred CCCceE--EeCCCHHHHHHHHHhhC-----------CeecCCeEEEEEecCCcccccccCCCcEEEEECCCCEEEeceEE
Confidence 443333 35899999999999885 49999999999984 35799999999899999999
Q ss_pred EeechhhccCCCccccCCCCHHHHHHHhhcCCcceeEEEEEcCCCCCCCCCCcceEEEecc-cCC-cccccccccccCCC
Q 013178 282 VSVSIGVLQSDFIEFTPNLPLWKKLAINNFNMAIYTKIFMKFPYKFWPTGPGTEFFIYAHE-RRG-YFPIWQHLENEMPG 359 (448)
Q Consensus 282 ~a~p~~~l~~~~~~~~p~l~~~~~~~~~~~~~~~~~~v~l~~~~~~w~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~ 359 (448)
+|+|+++|+...+.|.|+||..+..+|.++.|+.+.|+++.|+++||+.....-...+.+. ..+ ++..|... .+.+
T Consensus 991 VTVPLGVLKag~I~FsPPLPe~KqaAIqrLgfG~lnKV~LeFdrpFW~~d~d~FG~s~edtdlrG~~~~~wnlr--~psG 1068 (1713)
T PLN02976 991 ITVPLGCLKAETIKFSPPLPDWKYSSIQRLGFGVLNKVVLEFPEVFWDDSVDYFGATAEETDLRGQCFMFWNVK--KTVG 1068 (1713)
T ss_pred EeCCHHHhhhcccccCCcccHHHHHHHHhhccccceEEEEEeCCccccCCCCccccccccCCCCceEEEeccCC--CCCC
Confidence 9999999985447899999999999999999999999999999999987321111111110 111 12333221 1235
Q ss_pred CcEEEEEecchhhhhhhcCChHHHHHHHHHHHHHHHhCCC-CCCCceEeeccCCCCCCCCcccCCCCCCCCHHHHHHHhc
Q 013178 360 SNILFVTVTDEESRRVERQSDEKTKAEIMNNVLRKLFGNK-IPEPQSIFVPRWWSNRFFNGSYSNWPNGFTQQSYKELKV 438 (448)
Q Consensus 360 ~~~l~~~~~~~~a~~~~~~~~~e~~~~~~~~~L~~~~g~~-~~~~~~~~~~~W~~~~~~~g~~~~~~~g~~~~~~~~~~~ 438 (448)
.++|++++.|..+..+..++++++++.++ .+|+++||.. .++|..+..++|..+||++|+|++++||+....+..+++
T Consensus 1069 ~pVLVafv~G~aAreiEsLSDEE~Ve~AL-e~LrKlFG~~~iPdPv~~vvTrWssDPySrGSYSy~~PGs~~~d~d~LAe 1147 (1713)
T PLN02976 1069 APVLIALVVGKAAIDGQSMSSSDHVNHAL-MVLRKLFGEALVPDPVASVVTDWGRDPFSYGAYSYVAIGASGEDYDILGR 1147 (1713)
T ss_pred CCEEEEEeccHhHHHHhhCCHHHHHHHHH-HHHHHHcCcccccCcceeEEecCCCCCCcCccccCCCCCCCchHHHHHhC
Confidence 57999999999999999999999999999 9999999854 578999999999999999999999999998878899999
Q ss_pred ccC-ceEEccC
Q 013178 439 SIC-KLHVGLT 448 (448)
Q Consensus 439 p~~-~i~fAG~ 448 (448)
|++ ||||||.
T Consensus 1148 PVggRLFFAGE 1158 (1713)
T PLN02976 1148 PVENCLFFAGE 1158 (1713)
T ss_pred CCCCcEEEEeh
Confidence 985 5999995
No 10
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=6.8e-42 Score=331.32 Aligned_cols=402 Identities=28% Similarity=0.468 Sum_probs=267.0
Q ss_pred CCCCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEEceeCCc-eeeecceeccCCCCCCCHHHHHHHH
Q 013178 22 PTSPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNIGGH-TIELGANWVNSGGPKSSPSLQIAKK 100 (448)
Q Consensus 22 ~~~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~~~~g~-~~d~G~~~~~~~~~~~~~~~~l~~~ 100 (448)
+...++++|||||||+|||+||++|++.|. +|+|||+++|+|||++|.+..+. ++|+|++++++ ...+++.-++++
T Consensus 10 ~~~~~~~~VIVIGAGiaGLsAArqL~~~G~-~V~VLEARdRvGGRI~t~~~~~~~~vd~Gas~~~g--~~~npl~~l~~q 86 (501)
T KOG0029|consen 10 PEAGKKKKVIVIGAGLAGLSAARQLQDFGF-DVLVLEARDRVGGRIYTFKSEGGDHVDLGASVLTG--VYNNPLALLSKQ 86 (501)
T ss_pred ccccCCCcEEEECCcHHHHHHHHHHHHcCC-ceEEEeccCCcCceeEEEecCCCCeeecCCceecC--cCccHHHHHHHH
Confidence 456678899999999999999999999999 79999999999999999987654 59999999999 355699999999
Q ss_pred cCCceeecccccccceEEecCCcccc-------HHHHHHHHHHHHHhHHHHHHHhhhccCCCCCCCcccH-HHHHHhhcC
Q 013178 101 IKLKTFYSDYANLTSNIYKQDGGLYQ-------KHVVESAVRIAKTRDAFCTNLSKMLSSETTRDDDTSI-LGSQRLLKE 172 (448)
Q Consensus 101 lgl~~~~~~~~~~~~~~~~~~g~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 172 (448)
+|++........ .+|...+.... ......++................+.... ..+..+. ....++...
T Consensus 87 lgl~~~~~~~~~---~l~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~ 162 (501)
T KOG0029|consen 87 LGLELYKVRDTC---PLFNENGGESDKVFDDFVEQEFNRLLDDASNLEQRLDNEIIGISDDS-FGEALEAFLSASRLMKT 162 (501)
T ss_pred hCcccceecccc---cccccCCcccccccccchhhhhHHHHHHHhhhhhhhhhccccccccc-HHHHHHhHHHHHHHHHh
Confidence 999976543222 13332222111 00001111111100000000000000000 0000000 000111000
Q ss_pred ---CC-CChHHHHHHHHhhccc--cCCCcccccccccCCCcccccCCCCeeeeeCCCchHHHHHHHHHhhhcccccccCC
Q 013178 173 ---VP-MTPLEMAIDYFFNDYE--DAEPPRITSLKTTYPRNQLVDFGEDSYFVADPRGFESVVHSVAKQFLSHRHQVIRD 246 (448)
Q Consensus 173 ---~~-~~~~~~~~~~~~~~~~--~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~l~~~~~~~~~g 246 (448)
.. +........|+..... ........+.........+...+ ......+|+..++..+++.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~~~~G~~~v~~~la~~----------- 228 (501)
T KOG0029|consen 163 LLELLLEGEADKVLQWHLVNLELTFIAHLENASARLWDQDELFGGGG---IHLLMKGGYEPVVNSLAEG----------- 228 (501)
T ss_pred hHHHhhhhhhhHHHHHHHHHHHHHhhccHhHhhHHhhhhhhhccccc---chhHhhCCccHHHhhcCCC-----------
Confidence 00 0011112222221111 11111111111111111111111 1233478999988888765
Q ss_pred CceecCceeEEEEecCCc-EEEEeCCCcEEEeCEEEEeechhhccCCCccccCCCCHHHHHHHhhcCCcceeEEEEEcCC
Q 013178 247 PRLKLNKVVRNISYSKDK-VTVKTEDGSVYQANYAIVSVSIGVLQSDFIEFTPNLPLWKKLAINNFNMAIYTKIFMKFPY 325 (448)
Q Consensus 247 ~~i~~~~~V~~I~~~~~~-v~V~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~p~l~~~~~~~~~~~~~~~~~~v~l~~~~ 325 (448)
..|++++.|.+|...+++ +.+++.++..+++|+||+|+|+.+|+...+.|.|+||..+.++|+++.++.+.||.+.|+.
T Consensus 229 l~I~~~~~v~~i~~~~~~~~~~~~~~~~~~~~d~vvvt~pl~vLk~~~i~F~P~Lp~~k~~aI~~lg~g~~~Kv~l~F~~ 308 (501)
T KOG0029|consen 229 LDIHLNKRVRKIKYGDDGAVKVTVETGDGYEADAVVVTVPLGVLKSGLIEFSPPLPRWKQEAIDRLGFGLVNKVILEFPR 308 (501)
T ss_pred cceeeceeeEEEEEecCCceEEEEECCCeeEeeEEEEEccHHHhccCceeeCCCCcHHHHHHHHhcCCCceeEEEEEecc
Confidence 479999999999988766 4555566656999999999999999987799999999999999999999999999999999
Q ss_pred CCCCCCCCcceEEEecccCCccc--ccccccccCCCCcEEEEEecchhhhhhhcCChHHHHHHHHHHHHHHHhC-CCCCC
Q 013178 326 KFWPTGPGTEFFIYAHERRGYFP--IWQHLENEMPGSNILFVTVTDEESRRVERQSDEKTKAEIMNNVLRKLFG-NKIPE 402 (448)
Q Consensus 326 ~~w~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~e~~~~~~~~~L~~~~g-~~~~~ 402 (448)
.||+. +..++...+....... .++... ...+.++++..+.+..+..+.+++++++++.++ ..|+++|+ ...++
T Consensus 309 ~fW~~--~~d~fg~~~~~~~~~~~~~f~~~~-~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~-~~l~k~f~~~~~~~ 384 (501)
T KOG0029|consen 309 VFWDQ--DIDFFGIVPETSVLRGLFTFYDCK-PVAGHPVLMSVVVGEAAERVETLSDSEIVKKAM-KLLRKVFGSEEVPD 384 (501)
T ss_pred ccCCC--CcCeEEEccccccccchhhhhhcC-ccCCCCeEEEEehhhhhHHHhcCCHHHHHHHHH-HHHHHHhccCcCCC
Confidence 99975 3345555543333322 222211 123445888888888899999999999999999 99999997 46789
Q ss_pred CceEeeccCCCCCCCCcccCCCCCCCCHHHHHHHhcccCc-eEEccC
Q 013178 403 PQSIFVPRWWSNRFFNGSYSNWPNGFTQQSYKELKVSICK-LHVGLT 448 (448)
Q Consensus 403 ~~~~~~~~W~~~~~~~g~~~~~~~g~~~~~~~~~~~p~~~-i~fAG~ 448 (448)
|.+..+.+|..++++.|+|++.+++.....++.+++|..+ +||||.
T Consensus 385 p~~~~vt~w~~d~~~~gsys~~~~~~~~~~y~~l~~pi~~~~ffage 431 (501)
T KOG0029|consen 385 PLDALVTRWGTDPLSGGSYSYVAVGSDGDDYDRLAEPIKNRVFFAGE 431 (501)
T ss_pred ccceeeeeecccccCCccccccCCCCChhHHHHHhccccCcEEecch
Confidence 9999999999999999999999999877778999999965 999994
No 11
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=100.00 E-value=1.5e-38 Score=314.94 Aligned_cols=392 Identities=17% Similarity=0.208 Sum_probs=260.9
Q ss_pred CCcEEEECCChHHHHHHHHHHHc----CCCcEEEEecCCCCCceEEEceeCCceeeecceeccCCCCCCCHHHHHHHHcC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEA----GYKDFIILEASSRVGGRLHKGNIGGHTIELGANWVNSGGPKSSPSLQIAKKIK 102 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~----G~~~V~vlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~l~~~lg 102 (448)
++||+|||||+|||+||++|+++ |+ +|+|||+++++|||++|.+.+|+.+|.|+|+++. .+..++++++++|
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~-~v~vlE~~~r~GG~~~t~~~~g~~~e~G~~~~~~---~~~~~~~l~~~lg 77 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPV-ELTLVEASDRVGGKIQTVKEDGYLIERGPDSFLE---RKKSAPDLVKDLG 77 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCC-cEEEEEcCCcCcceEEEEeeCCEEEecCcccccc---CChHHHHHHHHcC
Confidence 46999999999999999999999 99 8999999999999999999999999999999998 6778999999999
Q ss_pred CceeecccccccceEEecCCccccH--HHHHHHHHHHHHhHHHHHHHhhhccCCCCCCCcccHHHHHHhhcCCCCChHHH
Q 013178 103 LKTFYSDYANLTSNIYKQDGGLYQK--HVVESAVRIAKTRDAFCTNLSKMLSSETTRDDDTSILGSQRLLKEVPMTPLEM 180 (448)
Q Consensus 103 l~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (448)
+.............++..+|+.++. .....+......+...+......+.... ...+.++.++.+-. ......+.
T Consensus 78 l~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~s~~e~l~~~--~g~~~~~~ 154 (462)
T TIGR00562 78 LEHVLVSDATGQRYVLVNRGKLMPVPTKIAPFVKTGLFSLGGKLRAGMDFIRPAS-PGKDESVEEFVRRR--FGDEVVEN 154 (462)
T ss_pred CCcccccCCCCceEEEECCCceecCCCChHHHhcCCCCCchhhHHhhhhhccCCC-CCCCcCHHHHHHHh--cCHHHHHH
Confidence 9866543222223444433665432 1111100000000011111111111111 12345665553311 11112222
Q ss_pred HHHHHhhccccCCCcccccccccCCCc---------------------------ccccCCCCeeeeeCCCchHHHHHHHH
Q 013178 181 AIDYFFNDYEDAEPPRITSLKTTYPRN---------------------------QLVDFGEDSYFVADPRGFESVVHSVA 233 (448)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~s~~~~~~~~---------------------------~~~~~~~~~~~~~~~~G~~~l~~~l~ 233 (448)
+...+.. ..++.+++..|+..+++.. .+. .+....+..+.+|++.++++|+
T Consensus 155 ~~~p~~~-~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~gG~~~l~~~l~ 232 (462)
T TIGR00562 155 LIEPLLS-GIYAGDPSKLSLKSTFPKFYQTEQKHGSLILGMKKTRNLPQGSGLQLTA-KKQGQDFQTLATGLETLPEEIE 232 (462)
T ss_pred HHHHHhc-ccccCCHHHhhHHHHhHHHHHHHHhcCcHHHHHHhhcccCccccccccc-cccCCceEecchhHHHHHHHHH
Confidence 2222221 1244555544443222110 000 0111224556899999999999
Q ss_pred HhhhcccccccCCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeechhhccCCCccccCCCCHHHHHHHhhcCC
Q 013178 234 KQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSIGVLQSDFIEFTPNLPLWKKLAINNFNM 313 (448)
Q Consensus 234 ~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~p~l~~~~~~~~~~~~~ 313 (448)
+.+. .++|++|++|++|+.+++++.|++.+|++++||+||+|+|++.+..+ .|++++...+++.+++|
T Consensus 233 ~~l~--------~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~~~~~l----l~~~~~~~~~~l~~l~~ 300 (462)
T TIGR00562 233 KRLK--------LTKVYKGTKVTKLSHRGSNYTLELDNGVTVETDSVVVTAPHKAAAGL----LSELSNSASSHLDKIHS 300 (462)
T ss_pred HHhc--------cCeEEcCCeEEEEEecCCcEEEEECCCcEEEcCEEEECCCHHHHHHH----hcccCHHHHHHHhcCCC
Confidence 9972 36899999999999998889999888888999999999999988752 36678888899999999
Q ss_pred cceeEEEEEcCCCCCCCCCCcceEEEeccc-C-Ccccccccc---cccCCCCcEEEEEecchhhhhhhcCChHHHHHHHH
Q 013178 314 AIYTKIFMKFPYKFWPTGPGTEFFIYAHER-R-GYFPIWQHL---ENEMPGSNILFVTVTDEESRRVERQSDEKTKAEIM 388 (448)
Q Consensus 314 ~~~~~v~l~~~~~~w~~~~~~~~~~~~~~~-~-~~~~~~~~~---~~~~~~~~~l~~~~~~~~a~~~~~~~~~e~~~~~~ 388 (448)
.++.++.+.|++++|+....+..++..... . ....+|.+. ...+++..++++++.+..+..+.+++++|+++.++
T Consensus 301 ~~~~~v~l~~~~~~~~~~~~~~g~l~~~~~~~~~~~~i~~s~~~p~~~p~g~~~l~~~~~g~~~~~~~~~~~ee~~~~v~ 380 (462)
T TIGR00562 301 PPVANVNLGFPEGSVDGELEGFGFLISRSSKFAILGCIFTSKLFPNRAPPGKTLLTAYIGGATDESIVDLSENEIINIVL 380 (462)
T ss_pred CceEEEEEEEchHHcCCCCCceEEEccCCCCCceEEEEEEccccCCcCCCCcEEEEEEeCCCCCccccCCCHHHHHHHHH
Confidence 999999999999988753332222222111 1 112233221 12233456788888777777788899999999999
Q ss_pred HHHHHHHhCCCCCCCceEeeccCCCCCCCCcccCCCCCCCCHHHHHH----HhcccCceEEccC
Q 013178 389 NNVLRKLFGNKIPEPQSIFVPRWWSNRFFNGSYSNWPNGFTQQSYKE----LKVSICKLHVGLT 448 (448)
Q Consensus 389 ~~~L~~~~g~~~~~~~~~~~~~W~~~~~~~g~~~~~~~g~~~~~~~~----~~~p~~~i~fAG~ 448 (448)
++|++++|.. .+|....+++|. .+++.+.+|+... .+. +..+.++|++||.
T Consensus 381 -~~L~~~~gi~-~~p~~~~v~rw~------~a~P~~~~g~~~~-~~~i~~~l~~~~~~l~l~G~ 435 (462)
T TIGR00562 381 -RDLKKVLNIN-NEPEMLCVTRWH------RAIPQYHVGHDQR-LKEARELLESAYPGVFLTGN 435 (462)
T ss_pred -HHHHHHhCCC-CCCcEEEEeEcc------ccCCCCCCChHHH-HHHHHHHHHhhCCCEEEecc
Confidence 9999999753 247888999999 7899999997432 343 4455579999984
No 12
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=100.00 E-value=1.5e-37 Score=307.30 Aligned_cols=391 Identities=15% Similarity=0.202 Sum_probs=254.7
Q ss_pred CcEEEECCChHHHHHHHHHHHc------CCCcEEEEecCCCCCceEEEceeCCceeeecceeccCCCCCCCHHHHHHHHc
Q 013178 28 NSVIIVGAGMSGFMAAKTLEEA------GYKDFIILEASSRVGGRLHKGNIGGHTIELGANWVNSGGPKSSPSLQIAKKI 101 (448)
Q Consensus 28 ~dViIIGaGiaGL~aA~~L~~~------G~~~V~vlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~l~~~l 101 (448)
++|+|||||+|||+||++|+++ |. +|+|||+++|+|||++|.+.+|+.+|+|+++++. .++.+.++++++
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~-~V~vlEa~~r~GGr~~T~~~~g~~~e~G~~~i~~---~~~~~~~l~~~l 77 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDL-NLILVEKEEYLGGKIHSVEEKDFIMESGADSIVA---RNEHVMPLVKDL 77 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCc-cEEEEecCCCccceEEEEeeCCEEEecCcHHHhc---CCHHHHHHHHHc
Confidence 4799999999999999999986 36 7999999999999999999999999999999988 678899999999
Q ss_pred CCceeecccccccceEEecCCcccc--HHH-------HHHHHHH-HHHhHHHHHHHhhhccCCCCCCCcccHHHHHHhhc
Q 013178 102 KLKTFYSDYANLTSNIYKQDGGLYQ--KHV-------VESAVRI-AKTRDAFCTNLSKMLSSETTRDDDTSILGSQRLLK 171 (448)
Q Consensus 102 gl~~~~~~~~~~~~~~~~~~g~~~~--~~~-------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (448)
|++............+|. +++..+ ... ....... ..........+...+.......++.++.++.+-
T Consensus 78 gl~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~~l~~-- 154 (463)
T PRK12416 78 NLEEEMVYNETGISYIYS-DNTLHPIPSDTIFGIPMSVESLFSSTLVSTKGKIVALKDFITKNKEFTKDTSLALFLES-- 154 (463)
T ss_pred CCccceecCCCCceEEEE-CCeEEECCCCCeecCCCChHHhhcCCcCCHHHHHHhhhhhccCCCCCCCCCCHHHHHHH--
Confidence 998765433332334444 444322 110 0000000 000001112222222221112246666665331
Q ss_pred CCCCChHHHHHHHHhhccccCCCcccccccccCCCcc--------c--------c--cCCCCeeeeeCCCchHHHHHHHH
Q 013178 172 EVPMTPLEMAIDYFFNDYEDAEPPRITSLKTTYPRNQ--------L--------V--DFGEDSYFVADPRGFESVVHSVA 233 (448)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~--------~--------~--~~~~~~~~~~~~~G~~~l~~~l~ 233 (448)
.......+.+...+.. ..++.+++..|+...++... + . .......+..+++|++.|+++|+
T Consensus 155 ~~~~~~~~~~~~p~~~-~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~ 233 (463)
T PRK12416 155 FLGKELVERQIAPVLS-GVYSGKLNELTMASTLPYLLDYKNKYGSIIKGFEENKKQFQSAGNKKFVSFKGGLSTIIDRLE 233 (463)
T ss_pred hcCHHHHHHHHHHHhc-ccccCCcccccHHHhhHHHHHHHHhcCcHHHHHHHhhhccCCCCCCceEeeCCCHHHHHHHHH
Confidence 1222233333333332 23666777766543222110 0 0 00112234556999999999999
Q ss_pred HhhhcccccccCCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeechhhccCCCccccCCCCHHHHHHHhhcCC
Q 013178 234 KQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSIGVLQSDFIEFTPNLPLWKKLAINNFNM 313 (448)
Q Consensus 234 ~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~p~l~~~~~~~~~~~~~ 313 (448)
+.+. .++|++|++|++|+.+++++.|.+.+|+++.||+||+|+|++.+.. +.+.|.++ ..+.++.+
T Consensus 234 ~~l~--------~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~a~p~~~~~~--ll~~~~l~----~~~~~~~~ 299 (463)
T PRK12416 234 EVLT--------ETVVKKGAVTTAVSKQGDRYEISFANHESIQADYVVLAAPHDIAET--LLQSNELN----EQFHTFKN 299 (463)
T ss_pred Hhcc--------cccEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEECCCHHHHHh--hcCCcchh----HHHhcCCC
Confidence 9973 3579999999999999889999988888899999999999998876 33445554 45678889
Q ss_pred cceeEEEEEcCCCCCCCCCCcceEEEecc-cCCcc-ccccc--ccccCCCCcEEEEEe-c--chhhhhhhcCChHHHHHH
Q 013178 314 AIYTKIFMKFPYKFWPTGPGTEFFIYAHE-RRGYF-PIWQH--LENEMPGSNILFVTV-T--DEESRRVERQSDEKTKAE 386 (448)
Q Consensus 314 ~~~~~v~l~~~~~~w~~~~~~~~~~~~~~-~~~~~-~~~~~--~~~~~~~~~~l~~~~-~--~~~a~~~~~~~~~e~~~~ 386 (448)
.++.++++.|++++|........++..+. ...+- ..|.+ .....++..+++..+ . ++.++.+.+++++|+.+.
T Consensus 300 ~~~~~v~l~~~~~~~~~~~~g~G~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~dee~~~~ 379 (463)
T PRK12416 300 SSLISIYLGFDILDEQLPADGTGFIVTENSDLHCDACTWTSRKWKHTSGKQKLLVRMFYKSTNPVYETIKNYSEEELVRV 379 (463)
T ss_pred CceEEEEEEechhhcCCCCCceEEEeeCCCCCeEEEEEeecCCCCCcCCCCeEEEEEEeCCCCCCchhhhcCCHHHHHHH
Confidence 99999999999887753222212222221 11111 12221 112234455666544 3 456777889999999999
Q ss_pred HHHHHHHHHhCCCCCCCceEeeccCCCCCCCCcccCCCCCCCCHH---HHHHHhcccCceEEccC
Q 013178 387 IMNNVLRKLFGNKIPEPQSIFVPRWWSNRFFNGSYSNWPNGFTQQ---SYKELKVSICKLHVGLT 448 (448)
Q Consensus 387 ~~~~~L~~~~g~~~~~~~~~~~~~W~~~~~~~g~~~~~~~g~~~~---~~~~~~~p~~~i~fAG~ 448 (448)
++ ++|+++||.. .+|....+++|. .+++.+.+|+... ..+.+..+.++|||||+
T Consensus 380 ~~-~~L~~~lG~~-~~p~~~~v~~W~------~a~P~y~~~~~~~~~~~~~~l~~~~~~l~~aG~ 436 (463)
T PRK12416 380 AL-YDIEKSLGIK-GEPEVVEVTNWK------DLMPKYHLEHNQAVQSLQEKMMNLYPNIYLAGA 436 (463)
T ss_pred HH-HHHHHHhCCC-CCceEEEEEEcc------ccCCCcCcCHHHHHHHHHHHHHhhCCCeEEecc
Confidence 99 9999999854 467788999998 5778778886433 12455566789999995
No 13
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=100.00 E-value=6.4e-36 Score=295.71 Aligned_cols=389 Identities=21% Similarity=0.242 Sum_probs=245.5
Q ss_pred CcEEEECCChHHHHHHHHHHHcC--CCcEEEEecCCCCCceEEEceeCCceeeecceeccCCCCCCCHHHHHHHHcCCce
Q 013178 28 NSVIIVGAGMSGFMAAKTLEEAG--YKDFIILEASSRVGGRLHKGNIGGHTIELGANWVNSGGPKSSPSLQIAKKIKLKT 105 (448)
Q Consensus 28 ~dViIIGaGiaGL~aA~~L~~~G--~~~V~vlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~l~~~lgl~~ 105 (448)
++|+|||||+|||+||+.|+++| + +|+|||+++++|||++|.+.+|+.+|.|+|+++. .++++.++++++|+..
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~-~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~---~~~~~~~l~~~lgl~~ 76 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDA-DITLLEASDRLGGKIQTVRKDGFPIELGPESFLA---RKPSAPALVKELGLED 76 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCC-CEEEEEcCCCCcceEEEEeeCCeEEecChHHhcC---CcHHHHHHHHHcCCcc
Confidence 47999999999999999999988 7 7999999999999999999999999999999888 6777999999999986
Q ss_pred eecccccccceEEecCCccccHH--HHHH----HHHHH-HHhHHHHHHH---hhhccCCCCCCCcccHHHHHHhhcCCCC
Q 013178 106 FYSDYANLTSNIYKQDGGLYQKH--VVES----AVRIA-KTRDAFCTNL---SKMLSSETTRDDDTSILGSQRLLKEVPM 175 (448)
Q Consensus 106 ~~~~~~~~~~~~~~~~g~~~~~~--~~~~----~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (448)
...........++. +|+.++.+ .... ..... .........+ ...........++.++.++.+. ....
T Consensus 77 ~~~~~~~~~~~~~~-~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~l~~--~~~~ 153 (451)
T PRK11883 77 ELVANTTGQSYIYV-NGKLHPIPPGTVMGIPTSIAPFLFAGLVSPIGKLRAAADLRPPRWKPGQDQSVGAFFRR--RFGD 153 (451)
T ss_pred ceecCCCCcceEEE-CCeEEECCCCCeeccCCCchhhhcCCCCCHHHHHHhhCcccCCCCCCCCCcCHHHHHHH--hccH
Confidence 54332212223333 55543211 0000 00000 0001111111 1111000001245566555331 1222
Q ss_pred ChHHHHHHHHhhccccCCCcccccccccCCCcc-------------cccC-----CCCeeeeeCCCchHHHHHHHHHhhh
Q 013178 176 TPLEMAIDYFFNDYEDAEPPRITSLKTTYPRNQ-------------LVDF-----GEDSYFVADPRGFESVVHSVAKQFL 237 (448)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~-------------~~~~-----~~~~~~~~~~~G~~~l~~~l~~~l~ 237 (448)
...+.++..+.. ..++.+++..|+...++... .... .....+..+++|++.++++|++.+.
T Consensus 154 ~~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~l~ 232 (451)
T PRK11883 154 EVVENLIEPLLS-GIYAGDIDTLSLRATFPQLAQAEDKYGSLLRGMRKALPKEKKKTKGVFGTLKGGLQSLIEALEEKLP 232 (451)
T ss_pred HHHHHHHHHhhc-eeecCChHHccHHHhHHHHHHHHHhcCcHHHHHHhhccccCCCCCCceEeeccHHHHHHHHHHHhCc
Confidence 222222222221 12555666665443221100 0000 0122345668999999999999973
Q ss_pred cccccccCCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeechhhccCCCccccCCCCHHHHHHHhhcCCccee
Q 013178 238 SHRHQVIRDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSIGVLQSDFIEFTPNLPLWKKLAINNFNMAIYT 317 (448)
Q Consensus 238 ~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~p~l~~~~~~~~~~~~~~~~~ 317 (448)
. .+|++|++|++|+.+++++.|.+.+|++++||+||+|+|++.+.+++ . ++...+++++++|.++.
T Consensus 233 ~--------~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~vI~a~p~~~~~~l~--~----~~~~~~~~~~~~~~~~~ 298 (451)
T PRK11883 233 A--------GTIHKGTPVTKIDKSGDGYEIVLSNGGEIEADAVIVAVPHPVLPSLF--V----APPAFALFKTIPSTSVA 298 (451)
T ss_pred C--------CeEEeCCEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCHHHHHHhc--c----ChhHHHHHhCCCCCceE
Confidence 2 17999999999999988899999899899999999999999998732 2 22346778899999999
Q ss_pred EEEEEcCCCCCCCCCCcceEEEe-cccCCcccc-cccc--cc-cCCCCcEEEEEecchhhhhhhcCChHHHHHHHHHHHH
Q 013178 318 KIFMKFPYKFWPTGPGTEFFIYA-HERRGYFPI-WQHL--EN-EMPGSNILFVTVTDEESRRVERQSDEKTKAEIMNNVL 392 (448)
Q Consensus 318 ~v~l~~~~~~w~~~~~~~~~~~~-~~~~~~~~~-~~~~--~~-~~~~~~~l~~~~~~~~a~~~~~~~~~e~~~~~~~~~L 392 (448)
++++.|+++++... ....++.. +.+..+..+ |.+. +. .+++..++..++.........+++++++++.++ ++|
T Consensus 299 ~v~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L 376 (451)
T PRK11883 299 TVALAFPESATNLP-DGTGFLVARNSDYTITACTWTSKKWPHTTPEGKVLLRLYVGRPGDEAVVDATDEELVAFVL-ADL 376 (451)
T ss_pred EEEEEeccccCCCC-CceEEEecCCCCCcEEEEEeEcCcCCCCCCCCcEEEEEecCCCCCchhccCCHHHHHHHHH-HHH
Confidence 99999999863321 21222222 222222233 3221 12 222334444444333333456789999999999 999
Q ss_pred HHHhCCCCCCCceEeeccCCCCCCCCcccCCCCCCCCHHHHHHHhcc---cCceEEccC
Q 013178 393 RKLFGNKIPEPQSIFVPRWWSNRFFNGSYSNWPNGFTQQSYKELKVS---ICKLHVGLT 448 (448)
Q Consensus 393 ~~~~g~~~~~~~~~~~~~W~~~~~~~g~~~~~~~g~~~~~~~~~~~p---~~~i~fAG~ 448 (448)
+++||.. .++....+++|. .+|+.+.||.. ...+.++.+ .++|||||.
T Consensus 377 ~~~~g~~-~~~~~~~~~rw~------~a~p~~~~~~~-~~~~~l~~~l~~~~~l~~aG~ 427 (451)
T PRK11883 377 SKVMGIT-GDPEFTIVQRWK------EAMPQYGVGHI-ERVAELRAGLPHYPGLYVAGA 427 (451)
T ss_pred HHHhCCC-CCceEEEEeecC------ccCCCCCccHH-HHHHHHHHhhhhCCCEEEECc
Confidence 9999753 356788999999 67888888873 334545444 469999994
No 14
>PLN02576 protoporphyrinogen oxidase
Probab=100.00 E-value=3.1e-35 Score=293.46 Aligned_cols=394 Identities=17% Similarity=0.168 Sum_probs=251.1
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHc-CCCcEEEEecCCCCCceEEEceeCCceeeecceeccCCCCCCCHHHHHHHHcC
Q 013178 24 SPPSNSVIIVGAGMSGFMAAKTLEEA-GYKDFIILEASSRVGGRLHKGNIGGHTIELGANWVNSGGPKSSPSLQIAKKIK 102 (448)
Q Consensus 24 ~~~~~dViIIGaGiaGL~aA~~L~~~-G~~~V~vlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~l~~~lg 102 (448)
.+.++||+|||||+|||+||++|+++ |+ +|+|||+++++|||++|.+.+|+.+|.|+|++.. .+..+..++++ |
T Consensus 9 ~~~~~~v~IIGaGisGL~aA~~L~~~~g~-~v~vlEa~~rvGGr~~t~~~~g~~~d~G~~~~~~---~~~~~~~l~~~-g 83 (496)
T PLN02576 9 AASSKDVAVVGAGVSGLAAAYALASKHGV-NVLVTEARDRVGGNITSVSEDGFIWEEGPNSFQP---SDPELTSAVDS-G 83 (496)
T ss_pred ccCCCCEEEECcCHHHHHHHHHHHHhcCC-CEEEEecCCCCCCceeEeccCCeEEecCCchhcc---CcHHHHHHHHc-C
Confidence 35567999999999999999999999 99 7999999999999999999999999999999987 66667777777 8
Q ss_pred Cceeecccc-cccceEEecCCccccH--HHHHHHHHHHHHhHHHHHHHhhhc---cCCCCCCCcccHHHHHHhhcCCCCC
Q 013178 103 LKTFYSDYA-NLTSNIYKQDGGLYQK--HVVESAVRIAKTRDAFCTNLSKML---SSETTRDDDTSILGSQRLLKEVPMT 176 (448)
Q Consensus 103 l~~~~~~~~-~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (448)
+........ .....++. +|+.++. .........+......+......+ .... ..++.++.++.+-. +...
T Consensus 84 l~~~~~~~~~~~~~~~~~-~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~sv~~~l~~~--~g~~ 159 (496)
T PLN02576 84 LRDDLVFPDPQAPRYVVW-NGKLRPLPSNPIDLPTFDLLSAPGKIRAGLGAFGWKRPPP-PGREESVGEFVRRH--LGDE 159 (496)
T ss_pred ChhheecCCCCceEEEEE-CCEEEEcCCChHHhcCcCcCChhHHHHHhHHHhhccCCCC-CCCCCcHHHHHHHh--cCHH
Confidence 875543222 12233443 6665432 111100000000001111111111 1111 22566666664321 2222
Q ss_pred hHHHHHHHHhhccccCCCcccccccccCCCccc-------------ccC------------------CCCeeeeeCCCch
Q 013178 177 PLEMAIDYFFNDYEDAEPPRITSLKTTYPRNQL-------------VDF------------------GEDSYFVADPRGF 225 (448)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~-------------~~~------------------~~~~~~~~~~~G~ 225 (448)
..+.+...+.. ..++.+++..|+...++.... ... .....+..+++|+
T Consensus 160 ~~~~~~~p~~~-~~~~~~~~~lS~~~~~~~~~~~e~~~gs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~ 238 (496)
T PLN02576 160 VFERLIDPFVS-GVYAGDPSSLSMKAAFPKLWNLEKRGGSIIGGAIKAIQEAKKNPKPEPRDPRLPKPKGQTVGSFRGGL 238 (496)
T ss_pred HHHHHHHHHhC-ceecCCHHHHhHHHHhHHHHHHHHhcCcHHHHHHHhhhhhcccccccccccccccccCCeeEeccchH
Confidence 23333333321 235555665555433221000 000 0112244568999
Q ss_pred HHHHHHHHHhhhcccccccCC-CceecCceeEEEEecCCc-EEEEe--CCC-cEEEeCEEEEeechhhccCCCccccCCC
Q 013178 226 ESVVHSVAKQFLSHRHQVIRD-PRLKLNKVVRNISYSKDK-VTVKT--EDG-SVYQANYAIVSVSIGVLQSDFIEFTPNL 300 (448)
Q Consensus 226 ~~l~~~l~~~l~~~~~~~~~g-~~i~~~~~V~~I~~~~~~-v~V~~--~~g-~~~~ad~VI~a~p~~~l~~~~~~~~p~l 300 (448)
+.|+++|++.+ + .+|++|++|++|+.++++ +.|++ .+| ++++||+||+|+|++.+..++ +++
T Consensus 239 ~~L~~~la~~l---------~~~~i~l~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~P~~~l~~ll----~~~ 305 (496)
T PLN02576 239 QTLPDALAKRL---------GKDKVKLNWKVLSLSKNDDGGYSLTYDTPEGKVNVTAKAVVMTAPLYVVSEML----RPK 305 (496)
T ss_pred HHHHHHHHHhh---------CcCcEEcCCEEEEEEECCCCcEEEEEecCCCceeEEeCEEEECCCHHHHHHHh----ccc
Confidence 99999999986 3 589999999999998876 55543 355 369999999999999998733 335
Q ss_pred CHHHHHHHhhcCCcceeEEEEEcCCCCCCC------CCCcceEEEec-cc-CCccccccc--cccc-CCCCcEEEEEecc
Q 013178 301 PLWKKLAINNFNMAIYTKIFMKFPYKFWPT------GPGTEFFIYAH-ER-RGYFPIWQH--LENE-MPGSNILFVTVTD 369 (448)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~v~l~~~~~~w~~------~~~~~~~~~~~-~~-~~~~~~~~~--~~~~-~~~~~~l~~~~~~ 369 (448)
+++..+++.+++|.+..++++.|++++|.. ...+-...... .. .....+|.+ .++. +++..+++.++.+
T Consensus 306 ~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~lg~~~~s~~~p~~~~~~~~~l~~~~~~ 385 (496)
T PLN02576 306 SPAAADALPEFYYPPVAAVTTSYPKEAVKRERLIDGPLEGFGQLHPRKQGVKTLGTIYSSSLFPDRAPEGRVLLLNYIGG 385 (496)
T ss_pred CHHHHHHhccCCCCceEEEEEEEchHHcccccccCCCCCceEEEccCCCCCceEEEEeecCcCCCCCCCCCEEEEEEECC
Confidence 666788899999999999999999999875 11111111111 11 111123322 1122 2334466677777
Q ss_pred hhhhhhhcCChHHHHHHHHHHHHHHHhCCCC-CCCceEeeccCCCCCCCCcccCCCCCCCCHHHHHHHhcc---c--Cce
Q 013178 370 EESRRVERQSDEKTKAEIMNNVLRKLFGNKI-PEPQSIFVPRWWSNRFFNGSYSNWPNGFTQQSYKELKVS---I--CKL 443 (448)
Q Consensus 370 ~~a~~~~~~~~~e~~~~~~~~~L~~~~g~~~-~~~~~~~~~~W~~~~~~~g~~~~~~~g~~~~~~~~~~~p---~--~~i 443 (448)
..+..+.+++++++++.++ ++|++++|... +.+....+++|. .+++.+.+|+... .+.+.+. . ++|
T Consensus 386 ~~~~~~~~~s~ee~~~~~~-~~L~~~~g~~~~~~p~~~~~~~w~------~a~P~~~~g~~~~-~~~~~~~l~~~~~~~l 457 (496)
T PLN02576 386 SRNTGIASASEEELVEAVD-RDLRKLLLKPGAPPPKVVGVRVWP------KAIPQYLLGHLDV-LEAAEKMEKDLGLPGL 457 (496)
T ss_pred CCCcccccCCHHHHHHHHH-HHHHHHhCCCCCCCCcEEEEeEcC------cccCCCCcCHHHH-HHHHHHHHHhcCCCCE
Confidence 7778888999999999999 99999998542 356666788998 6888888987533 4444442 2 699
Q ss_pred EEccC
Q 013178 444 HVGLT 448 (448)
Q Consensus 444 ~fAG~ 448 (448)
+|||.
T Consensus 458 ~~aG~ 462 (496)
T PLN02576 458 FLGGN 462 (496)
T ss_pred EEecc
Confidence 99983
No 15
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=100.00 E-value=8.4e-36 Score=281.87 Aligned_cols=385 Identities=19% Similarity=0.227 Sum_probs=258.5
Q ss_pred CcEEEECCChHHHHHHHHHHHcC--CCcEEEEecCCCCCceEEEceeCCceeeecceeccCCCCCCCHHHHHHHHcCCce
Q 013178 28 NSVIIVGAGMSGFMAAKTLEEAG--YKDFIILEASSRVGGRLHKGNIGGHTIELGANWVNSGGPKSSPSLQIAKKIKLKT 105 (448)
Q Consensus 28 ~dViIIGaGiaGL~aA~~L~~~G--~~~V~vlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~l~~~lgl~~ 105 (448)
++|+|||||+|||+|||+|+|++ . +|+|||+++++||.++|...+|+.+|.|++.+.. ....+.++++++|++.
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~-~i~lfE~~~r~GG~l~T~~~~G~~~e~G~~~f~~---~~~~~l~li~eLGled 76 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDV-EVTLFEADDRVGGLLRTVKIDGFLFERGPHHFLA---RKEEILDLIKELGLED 76 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCC-cEEEEecCCCCCceEEEEeeCCEEEeechhheec---chHHHHHHHHHhCcHH
Confidence 36999999999999999999999 7 8999999999999999999999999999999988 4578899999999998
Q ss_pred eecccccccceEEecCCccccHHHHHHH-HHHH-----HHhHHHHHHHhhhccCCCCCCCcccHHHH--HHhhcCCCCCh
Q 013178 106 FYSDYANLTSNIYKQDGGLYQKHVVESA-VRIA-----KTRDAFCTNLSKMLSSETTRDDDTSILGS--QRLLKEVPMTP 177 (448)
Q Consensus 106 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 177 (448)
...+.......+|. +|+.++.+...-+ .... .........+..... .. ..++.++.++ .++.+.+.
T Consensus 77 ~l~~~~~~~~~i~~-~gkl~p~P~~~i~~ip~~~~~~~~~~~~~~~~~~~~~~-~~-~~~d~sv~~f~r~~fG~ev~--- 150 (444)
T COG1232 77 KLLWNSTARKYIYY-DGKLHPIPTPTILGIPLLLLSSEAGLARALQEFIRPKS-WE-PKQDISVGEFIRRRFGEEVV--- 150 (444)
T ss_pred hhccCCcccceEee-CCcEEECCccceeecCCccccchhHHHHHHHhhhcccC-CC-CCCCcCHHHHHHHHHhHHHH---
Confidence 87755444344554 8887663221100 0000 000111111111110 11 2356666655 33333221
Q ss_pred HHHHHHHHhhccccCCCcccccccccCCCcccc--cCC----------------CCeeeeeCCCchHHHHHHHHHhhhcc
Q 013178 178 LEMAIDYFFNDYEDAEPPRITSLKTTYPRNQLV--DFG----------------EDSYFVADPRGFESVVHSVAKQFLSH 239 (448)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~--~~~----------------~~~~~~~~~~G~~~l~~~l~~~l~~~ 239 (448)
+.+...+. ...|+.+.+.+|+....+..... .++ ....+...++|+++++++|++.+.
T Consensus 151 -~~~~~pll-~giy~~~~~~LS~~~~~p~~~~~e~~~~s~~~g~~~~~~~~~~~~~~~~~~~~gG~~~l~~al~~~l~-- 226 (444)
T COG1232 151 -ERFIEPLL-EGIYAGDADKLSAAAAFPILARAERKYGSLLRGAKKEGLPKQSLKKEKFGYLRGGLQSLIEALAEKLE-- 226 (444)
T ss_pred -HHHHHHHh-hchhcCCHHHhhHHHhcchhhhhhhhhcchhhhhhhccCcccccccccccccCccHHHHHHHHHHHhh--
Confidence 21222211 12367777777776433322110 000 123677889999999999999974
Q ss_pred cccccCCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeechhhccCCCccccCCCCHHHHHHHhhcCCcceeEE
Q 013178 240 RHQVIRDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSIGVLQSDFIEFTPNLPLWKKLAINNFNMAIYTKI 319 (448)
Q Consensus 240 ~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~p~l~~~~~~~~~~~~~~~~~~v 319 (448)
.+|+++++|++|.++..++.+.+.+|.++.||.||+|+|+..+.+++ +. ....+..+++.+.++.++
T Consensus 227 -------~~i~~~~~V~~i~~~~~~~~~~~~~g~~~~~D~VI~t~p~~~l~~ll----~~--~~~~~~~~~~~~~s~~~v 293 (444)
T COG1232 227 -------AKIRTGTEVTKIDKKGAGKTIVDVGGEKITADGVISTAPLPELARLL----GD--EAVSKAAKELQYTSVVTV 293 (444)
T ss_pred -------hceeecceeeEEEEcCCccEEEEcCCceEEcceEEEcCCHHHHHHHc----CC--cchhhhhhhccccceEEE
Confidence 45999999999999988888888899899999999999999987632 22 334577899999999999
Q ss_pred EEEcCCCCCCCCCCcceEEEecccCCc-ccccccc--cccCC-CCcEEEEEecchhhhhhhcCChHHHHHHHHHHHHHHH
Q 013178 320 FMKFPYKFWPTGPGTEFFIYAHERRGY-FPIWQHL--ENEMP-GSNILFVTVTDEESRRVERQSDEKTKAEIMNNVLRKL 395 (448)
Q Consensus 320 ~l~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~-~~~~l~~~~~~~~a~~~~~~~~~e~~~~~~~~~L~~~ 395 (448)
.+.++++--..-+++.++...+.+..+ ..+|.+. +...| +..++.+++....-+....++|||+++.++ ++|.++
T Consensus 294 v~~~~~~~~~~~~~~~g~~iad~~~~~~a~~~~S~~~p~~~p~g~~ll~~~~~~~g~~~~~~~~dee~~~~~l-~~L~~~ 372 (444)
T COG1232 294 VVGLDEKDNPALPDGYGLLIADDDPYILAITFHSNKWPHEAPEGKTLLRVEFGGPGDESVSTMSDEELVAAVL-DDLKKL 372 (444)
T ss_pred EEEeccccccCCCCceEEEEecCCCcceeEEEecccCCCCCCCCcEEEEEEeecCCCcchhccCHHHHHHHHH-HHHHHH
Confidence 999988611111233233333333212 2344432 23334 455777766555444566789999999999 999999
Q ss_pred hCCCCCCCceEeeccCCCCCCCCcccCCCCCCCCHHHHHHHhccc----CceEEccC
Q 013178 396 FGNKIPEPQSIFVPRWWSNRFFNGSYSNWPNGFTQQSYKELKVSI----CKLHVGLT 448 (448)
Q Consensus 396 ~g~~~~~~~~~~~~~W~~~~~~~g~~~~~~~g~~~~~~~~~~~p~----~~i~fAG~ 448 (448)
++... ++....++||. .+++.+.+|+.+. .+.++... ++|+.+|.
T Consensus 373 ~~~~~-~~~~~~v~r~~------~~~PqY~vG~~~~-~~~ir~~l~~~y~gi~~~G~ 421 (444)
T COG1232 373 GGING-DPVFVEVTRWK------YAMPQYEVGHLDR-LEPIRAALKGAYPGIKSVGR 421 (444)
T ss_pred cCcCc-chhheeeeecc------ccCCccchhHHHH-HHHHHHhhccccCCeEEecc
Confidence 96543 44478899999 7999999998654 34443332 68888874
No 16
>PRK07233 hypothetical protein; Provisional
Probab=100.00 E-value=7.8e-35 Score=286.67 Aligned_cols=386 Identities=15% Similarity=0.153 Sum_probs=240.3
Q ss_pred cEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEEceeCCceeeecceeccCCCCCCCHHHHHHHHcCCceeec
Q 013178 29 SVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNIGGHTIELGANWVNSGGPKSSPSLQIAKKIKLKTFYS 108 (448)
Q Consensus 29 dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~l~~~lgl~~~~~ 108 (448)
+|+|||||++||+||+.|+++|+ +|+|||+++++||++.+...+|+.+|.|+|+++. .++++.++++++|+.....
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~-~v~vlE~~~~~GG~~~s~~~~g~~~d~g~~~~~~---~~~~~~~l~~~lg~~~~~~ 76 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGH-EVTVFEADDQLGGLAASFEFGGLPIERFYHHIFK---SDEALLELLDELGLEDKLR 76 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-cEEEEEeCCCCCCceeeeccCCcchhhhhhhhcc---ccHHHHHHHHHcCCCCcee
Confidence 69999999999999999999999 8999999999999999999999999999999988 7889999999999875543
Q ss_pred ccccccceEEecCCccccHHHHHHHH-----HHHHHhHHHHHHHhhhc-cCCCCCCCcccHHHHHHhhcCCCCChHHHHH
Q 013178 109 DYANLTSNIYKQDGGLYQKHVVESAV-----RIAKTRDAFCTNLSKML-SSETTRDDDTSILGSQRLLKEVPMTPLEMAI 182 (448)
Q Consensus 109 ~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (448)
..... ..++. +|+.++........ ............+.... .... ..++.++.++..-. ......+.+.
T Consensus 77 ~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~l~~~--~~~~~~~~~~ 151 (434)
T PRK07233 77 WRETK-TGYYV-DGKLYPLGTPLELLRFPHLSLIDKFRLGLLTLLARRIKDWR-ALDKVPAEEWLRRW--SGEGVYEVFW 151 (434)
T ss_pred eccCc-eEEEE-CCeEecCCCHHHHHcCCCCCHHHHHHhHHHHHhhhhccccc-ccccccHHHHHHHh--cCHHHHHHHH
Confidence 32221 12333 44443311000000 00000000000000000 1111 11344554443221 1112222233
Q ss_pred HHHhhccccCCCcccccccccCCCccc---ccCC-CCeeeeeCCCchHHHHHHHHHhhhcccccccCCCceecCceeEEE
Q 013178 183 DYFFNDYEDAEPPRITSLKTTYPRNQL---VDFG-EDSYFVADPRGFESVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNI 258 (448)
Q Consensus 183 ~~~~~~~~~~~~~~~~s~~~~~~~~~~---~~~~-~~~~~~~~~~G~~~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I 258 (448)
+.+.. ..++.+++..|+..++..... .... ....+..+++|++.++++|++.+.+ .|++|++|++|++|
T Consensus 152 ~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~------~g~~v~~~~~V~~i 224 (434)
T PRK07233 152 EPLLE-SKFGDYADDVSAAWLWSRIKRRGNRRYSLFGEKLGYLEGGFATLIDALAEAIEA------RGGEIRLGTPVTSV 224 (434)
T ss_pred HHHHh-cccCCCccccCHHHHHHHHhhhhccccccCCceEeccCCCHHHHHHHHHHHHHh------cCceEEeCCCeeEE
Confidence 33221 125566666665433221111 0000 0112445689999999999999876 58899999999999
Q ss_pred EecCCcEEEEeCCCcEEEeCEEEEeechhhccCCCccccCCCCHHHHHHHhhcCCcceeEEEEEcCCCCCCCCCCcceEE
Q 013178 259 SYSKDKVTVKTEDGSVYQANYAIVSVSIGVLQSDFIEFTPNLPLWKKLAINNFNMAIYTKIFMKFPYKFWPTGPGTEFFI 338 (448)
Q Consensus 259 ~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~p~l~~~~~~~~~~~~~~~~~~v~l~~~~~~w~~~~~~~~~~ 338 (448)
+.+++++.+.+.++++++||+||+|+|+..+.+++ |++++...+.++++.+.+..++++.|+++.++. .+..
T Consensus 225 ~~~~~~~~~~~~~~~~~~ad~vI~a~p~~~~~~ll----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~ 296 (434)
T PRK07233 225 VIDGGGVTGVEVDGEEEDFDAVISTAPPPILARLV----PDLPADVLARLRRIDYQGVVCMVLKLRRPLTDY----YWLN 296 (434)
T ss_pred EEcCCceEEEEeCCceEECCEEEECCCHHHHHhhc----CCCcHHHHhhhcccCccceEEEEEEecCCCCCC----ceee
Confidence 99888877656677799999999999999887632 566777777888999999999999999885431 1111
Q ss_pred EecccCCcccccccc---c-ccCCCCcEE--EEEecchhhhhhhcCChHHHHHHHHHHHHHHHhCCC-CCCCceEeeccC
Q 013178 339 YAHERRGYFPIWQHL---E-NEMPGSNIL--FVTVTDEESRRVERQSDEKTKAEIMNNVLRKLFGNK-IPEPQSIFVPRW 411 (448)
Q Consensus 339 ~~~~~~~~~~~~~~~---~-~~~~~~~~l--~~~~~~~~a~~~~~~~~~e~~~~~~~~~L~~~~g~~-~~~~~~~~~~~W 411 (448)
..+++..+..++..+ . ..+++..++ .+++.++. .+..++++++++.++ ++|+++++.. ..++.+..+.+|
T Consensus 297 ~~~~~~~~~~~~~~s~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~L~~~~p~~~~~~~~~~~~~r~ 373 (434)
T PRK07233 297 INDPGAPFGGVIEHTNLVPPERYGGEHLVYLPKYLPGDH--PLWQMSDEELLDRFL-SYLRKMFPDFDRDDVRAVRISRA 373 (434)
T ss_pred ecCCCCCcceEEEecccCCccccCCceEEEEeeecCCCC--hhhcCCHHHHHHHHH-HHHHHhCCCCChhheeeEEEEEe
Confidence 111112222221111 1 112344443 23444333 355789999999999 9999999632 223444444444
Q ss_pred CCCCCCCcccCCCCCCCCHHHHHHHhcccCceEEccC
Q 013178 412 WSNRFFNGSYSNWPNGFTQQSYKELKVSICKLHVGLT 448 (448)
Q Consensus 412 ~~~~~~~g~~~~~~~g~~~~~~~~~~~p~~~i~fAG~ 448 (448)
+++ ++.+.||. .+..+.+++|.+||||||+
T Consensus 374 ---~~a---~~~~~~g~-~~~~~~~~~~~~~l~~aG~ 403 (434)
T PRK07233 374 ---PYA---QPIYEPGY-LDKIPPYDTPIEGLYLAGM 403 (434)
T ss_pred ---ccc---cccccCch-hhcCCCcccCcCCEEEeCC
Confidence 444 44556774 3556778889999999995
No 17
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=100.00 E-value=5.4e-35 Score=288.51 Aligned_cols=392 Identities=24% Similarity=0.298 Sum_probs=239.2
Q ss_pred hHHHHHHHHHHHcCCCcEEEEecCCCCCceEEEceeC--CceeeecceeccCCCCCCCHHHHHHHHcCCceeeccccc-c
Q 013178 37 MSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNIG--GHTIELGANWVNSGGPKSSPSLQIAKKIKLKTFYSDYAN-L 113 (448)
Q Consensus 37 iaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~~~~--g~~~d~G~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~~-~ 113 (448)
+|||+||++|+++|+ +|+|||+++|+|||+.|.+.+ |+.+|.|+++++. .+..+..++.++++......... .
T Consensus 1 iaGL~aA~~L~~~G~-~v~vlEa~~r~GGr~~t~~~~~~g~~~e~G~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~ 76 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGY-DVTVLEASDRVGGRIRTFRFDNPGFTFELGAHRFFG---MYPNLLNLIDELGLELSLETFPFPQ 76 (450)
T ss_dssp HHHHHHHHHHHHTTT-EEEEEESSSSSBTTS-EEEETTTTEEEESSS-EEET---TSHHHHHHHHHHTHHTTEEEEEESS
T ss_pred ChHHHHHHHHHhCCC-CEEEEEcCCCCCcceEEecCCccceeecCCcccccc---cchhhHHHHHHhhhccccccccccc
Confidence 699999999999999 899999999999999999998 9999999999997 66779999999998532221111 1
Q ss_pred cceEEecCCcc-c--c---HHHH-------------HHHHHHHHHhHHHHHHHhhhccCCCCCCCcccHHHHH---Hhhc
Q 013178 114 TSNIYKQDGGL-Y--Q---KHVV-------------ESAVRIAKTRDAFCTNLSKMLSSETTRDDDTSILGSQ---RLLK 171 (448)
Q Consensus 114 ~~~~~~~~g~~-~--~---~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 171 (448)
....+...+.. . . .... ..................................+.. .+.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (450)
T PF01593_consen 77 IPFVYWPFGDGRPPWPPSQLPRNLNEFAALISLARFFRLLERLNKLRQMLDPFFNKAEPEFLEDDLESFLEFLDSQSFSE 156 (450)
T ss_dssp EEEEEEEEEEEEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeeeccccccccccccccccccccchhhhhhccccccccccccchhccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhh
Confidence 11111111110 0 0 0000 0000000000000000000000000000000000000 0000
Q ss_pred CCCCChHHHHHHHHhhccccCCCcccccccccCCCc----ccccCCCCeeeeeCCCchHHHHHHHHHhhhcccccccCCC
Q 013178 172 EVPMTPLEMAIDYFFNDYEDAEPPRITSLKTTYPRN----QLVDFGEDSYFVADPRGFESVVHSVAKQFLSHRHQVIRDP 247 (448)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~----~~~~~~~~~~~~~~~~G~~~l~~~l~~~l~~~~~~~~~g~ 247 (448)
......................... ......... ......... +....+++..+...+.+.. |.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~---------g~ 224 (450)
T PF01593_consen 157 IFRESLFRPFFFGAFGFLPDESSAA--LALLSFPHFDLQDNGGYFPFGG-LTVGMGGLSLALALAAEEL---------GG 224 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTHH--HHHHHHHHCHHHHHHHHTTSST-EEEETTTTHHHHHHHHHHH---------GG
T ss_pred hhHHHHHHhhhhhhhccccchhhhh--HHHhhhhhcccccccccccccc-eeecccchhHHHHHHHhhc---------Cc
Confidence 0000000000000000000000000 000000000 000011111 1122456666666666653 66
Q ss_pred ceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeechhhccCCCccccCCCCHHHHHHHhhcCCcceeEEEEEcCCCC
Q 013178 248 RLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSIGVLQSDFIEFTPNLPLWKKLAINNFNMAIYTKIFMKFPYKF 327 (448)
Q Consensus 248 ~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~p~l~~~~~~~~~~~~~~~~~~v~l~~~~~~ 327 (448)
+|++|++|++|+.++++|.|.+.+|++++||+||+|+|++.+.+ +.+.|++|..+.++++++++.++.++++.|+.+|
T Consensus 225 ~i~l~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~--i~~~p~l~~~~~~a~~~~~~~~~~~v~l~~~~~~ 302 (450)
T PF01593_consen 225 EIRLNTPVTRIEREDGGVTVTTEDGETIEADAVISAVPPSVLKN--ILLLPPLPEDKRRAIENLPYSSVSKVFLGFDRPF 302 (450)
T ss_dssp GEESSEEEEEEEEESSEEEEEETTSSEEEESEEEE-S-HHHHHT--SEEESTSHHHHHHHHHTEEEEEEEEEEEEESSGG
T ss_pred eeecCCcceeccccccccccccccceEEecceeeecCchhhhhh--hhhcccccccccccccccccCcceeEEEeeeccc
Confidence 99999999999999999999999999999999999999999986 6788999998899999999999999999999999
Q ss_pred CCCCCCcceEEEecccCCccccccccc--ccCCCCcEEEEEecchhhhhhhcCChHHHHHHHHHHHHHHHhCC-CCCCCc
Q 013178 328 WPTGPGTEFFIYAHERRGYFPIWQHLE--NEMPGSNILFVTVTDEESRRVERQSDEKTKAEIMNNVLRKLFGN-KIPEPQ 404 (448)
Q Consensus 328 w~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~a~~~~~~~~~e~~~~~~~~~L~~~~g~-~~~~~~ 404 (448)
|+........++.+.......++.... .. ++..++..++.++.+..+.+++++++++.++ ++|+++++. ..+++.
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~-~~L~~~~~~~~~~~~~ 380 (450)
T PF01593_consen 303 WPPDIDFFGILYSDGFSPIGYVSDPSKFPGR-PGGGVLTSYVGGPDAPEWDDLSDEEILERVL-DDLRKILPGASIPDPI 380 (450)
T ss_dssp GGSTTTESEEEEESSTSSEEEEEEECCTTSC-TTSEEEEEEEEHHHHHHHTTSCHHHHHHHHH-HHHHHHHTTGGGGEES
T ss_pred ccccccccceecccCccccccccccccCccc-ccCCcceeeeeccccchhcccchhhhHHHHH-HHhhhccccccccccc
Confidence 998432233344433112222222221 11 3567888888888778899999999999999 999999974 456777
Q ss_pred eEeeccCCCCCCCCcccCCCCCCCCHHHHHHHhccc-CceEEccC
Q 013178 405 SIFVPRWWSNRFFNGSYSNWPNGFTQQSYKELKVSI-CKLHVGLT 448 (448)
Q Consensus 405 ~~~~~~W~~~~~~~g~~~~~~~g~~~~~~~~~~~p~-~~i~fAG~ 448 (448)
++.+++|.++++.+|+|++++++.....++.+++|. +||||||.
T Consensus 381 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~ 425 (450)
T PF01593_consen 381 DITVTRWSRDPYPRGSYSYFPPGQSSQFRPALRTPIDPGLYFAGD 425 (450)
T ss_dssp EEEEEECTTSTTTSSSCECHCTTHHHHHHHHHHSCBTTTEEE-SG
T ss_pred cccccccccccccccccccccccccccccccccCCcceEEEEeec
Confidence 889999999999999999999998656889999999 59999994
No 18
>PRK07208 hypothetical protein; Provisional
Probab=100.00 E-value=5.4e-32 Score=268.99 Aligned_cols=389 Identities=18% Similarity=0.133 Sum_probs=244.2
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEEceeCCceeeecceeccCCCCCCCHHHHHHHHcCCc
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNIGGHTIELGANWVNSGGPKSSPSLQIAKKIKLK 104 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~l~~~lgl~ 104 (448)
.+++||+|||||+|||+||+.|+++|+ +|+|+|+++++||++.|...+|+.+|.|+|++.. .+..+.+++++++..
T Consensus 2 ~~~~~vvIiGaGisGL~aA~~L~~~g~-~v~v~E~~~~~GG~~~s~~~~g~~~d~G~h~~~~---~~~~~~~l~~~l~~~ 77 (479)
T PRK07208 2 TNKKSVVIIGAGPAGLTAAYELLKRGY-PVTVLEADPVVGGISRTVTYKGNRFDIGGHRFFS---KSPEVMDLWNEILPD 77 (479)
T ss_pred CCCCcEEEECcCHHHHHHHHHHHHCCC-cEEEEecCCCCCceeeeeccCCceEccCCceecc---CCHHHHHHHHHhcCC
Confidence 567899999999999999999999999 7999999999999999999999999999999988 788999999999863
Q ss_pred eeecccccccceEEecCCcccc--HHHHHHH--HHHHHHhHHHHHHHhhhccCCCCCCCcccHHHHHHhhcCCCCChHHH
Q 013178 105 TFYSDYANLTSNIYKQDGGLYQ--KHVVESA--VRIAKTRDAFCTNLSKMLSSETTRDDDTSILGSQRLLKEVPMTPLEM 180 (448)
Q Consensus 105 ~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (448)
...... .....++. +|+.++ ......+ ...........+.+....... .++.++.++.+- .+.....+.
T Consensus 78 ~~~~~~-~~~~~~~~-~g~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~s~~e~l~~--~~g~~~~~~ 150 (479)
T PRK07208 78 DDFLLR-PRLSRIYY-RGKFFDYPLKAFDALKNLGLWRTAKCGASYLKARLRPR---KEEDSFEDWVIN--RFGRRLYST 150 (479)
T ss_pred Cccccc-cccceEEE-CCEEecCCcchhHHHHhCCHhHHHHHHHHHHHHhcCCC---CCCCCHHHHHHH--hhCHHHHHH
Confidence 322211 11223343 555533 2211111 000000000011111111111 145666665432 122222333
Q ss_pred HHHHHhhccccCCCcccccccccCCCccc-----------cc-----------CC-CCeeeeeCCCchHHHHHHHHHhhh
Q 013178 181 AIDYFFNDYEDAEPPRITSLKTTYPRNQL-----------VD-----------FG-EDSYFVADPRGFESVVHSVAKQFL 237 (448)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~-----------~~-----------~~-~~~~~~~~~~G~~~l~~~l~~~l~ 237 (448)
+...+.. ..++.+++..|+...+..... .. .. ....+..+++|++.++++|++.+.
T Consensus 151 ~~~p~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gG~~~l~~~L~~~l~ 229 (479)
T PRK07208 151 FFKGYTE-KVWGVPCDEISADWAAQRIKGLSLGKAIRNALRRSLGLKRRNKEVETSLIEEFRYPKLGPGQLWETAAEKLE 229 (479)
T ss_pred HHHHhhh-hhhCCChHHCCChHHhCcccCCCHHHHHHHHhhhcccccccCCCccccceeEEeCCCCCcchHHHHHHHHHH
Confidence 3333322 125666776666532221100 00 00 112455678999999999999987
Q ss_pred cccccccCCCceecCceeEEEEecCCcE-E-EEe--CCCc--EEEeCEEEEeechhhccCCCccccCCCCHHHHHHHhhc
Q 013178 238 SHRHQVIRDPRLKLNKVVRNISYSKDKV-T-VKT--EDGS--VYQANYAIVSVSIGVLQSDFIEFTPNLPLWKKLAINNF 311 (448)
Q Consensus 238 ~~~~~~~~g~~i~~~~~V~~I~~~~~~v-~-V~~--~~g~--~~~ad~VI~a~p~~~l~~~~~~~~p~l~~~~~~~~~~~ 311 (448)
+ .|++|++|++|++|..+++++ . +.. .+|+ ++.||+||+|+|+..+.++ +.|++++...++++.+
T Consensus 230 ~------~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~~l~~~---l~~~~~~~~~~~~~~l 300 (479)
T PRK07208 230 A------LGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLRELVAA---LDPPPPPEVRAAAAGL 300 (479)
T ss_pred H------cCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHHHHHHh---cCCCCCHHHHHHHhCC
Confidence 6 589999999999999987763 3 332 2353 6899999999999988753 2356777888888999
Q ss_pred CCcceeEEEEEcCCCCCCCCCCcceEEEecccCCc-----ccccccccccCCCCc-EEE-EEecchhhhhhhcCChHHHH
Q 013178 312 NMAIYTKIFMKFPYKFWPTGPGTEFFIYAHERRGY-----FPIWQHLENEMPGSN-ILF-VTVTDEESRRVERQSDEKTK 384 (448)
Q Consensus 312 ~~~~~~~v~l~~~~~~w~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~l~-~~~~~~~a~~~~~~~~~e~~ 384 (448)
++.++.++++.|+++.+.. . .+....+....+ +..|.+ ...+++.. ++. .++.... ..+.+++++|++
T Consensus 301 ~~~~~~~v~l~~~~~~~~~--~-~~~~~~~~~~~~~r~~~~~~~~~-~~~p~g~~~~l~~~~~~~~~-~~~~~~~deel~ 375 (479)
T PRK07208 301 RYRDFITVGLLVKELNLFP--D-NWIYIHDPDVKVGRLQNFNNWSP-YLVPDGRDTWLGLEYFCFEG-DDLWNMSDEDLI 375 (479)
T ss_pred CcceeEEEEEEecCCCCCC--C-ceEEecCCCCccceecccccCCc-ccCCCCCceEEEEEEEccCC-CccccCCHHHHH
Confidence 9999999999999875433 1 121111111111 111221 11233332 232 2322222 245588999999
Q ss_pred HHHHHHHHHHHhCCCCCCCceEeeccCCCCCCCCcccCCCCCCCCHHHHHH---HhcccCceEEcc
Q 013178 385 AEIMNNVLRKLFGNKIPEPQSIFVPRWWSNRFFNGSYSNWPNGFTQQSYKE---LKVSICKLHVGL 447 (448)
Q Consensus 385 ~~~~~~~L~~~~g~~~~~~~~~~~~~W~~~~~~~g~~~~~~~g~~~~~~~~---~~~p~~~i~fAG 447 (448)
+.++ ++|+++......++....+.+|. .+++.+.+|+... .+. +.++.+||++||
T Consensus 376 ~~~~-~~L~~l~~~~~~~~~~~~v~r~~------~a~P~y~~~~~~~-~~~~~~~~~~~~~l~laG 433 (479)
T PRK07208 376 ALAI-QELARLGLIRPADVEDGFVVRVP------KAYPVYDGTYERN-VEIIRDLLDHFPNLHLVG 433 (479)
T ss_pred HHHH-HHHHHcCCCChhheeEEEEEEec------CcccCCCchHHHH-HHHHHHHHHhcCCceeec
Confidence 9999 99999732223456777888887 7888888887533 343 346678999998
No 19
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=100.00 E-value=3.6e-32 Score=268.16 Aligned_cols=388 Identities=19% Similarity=0.180 Sum_probs=236.1
Q ss_pred cEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEEce-eCCceeeecceeccCCCCCCCHHHHHHHHcCCceee
Q 013178 29 SVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGN-IGGHTIELGANWVNSGGPKSSPSLQIAKKIKLKTFY 107 (448)
Q Consensus 29 dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~~-~~g~~~d~G~~~~~~~~~~~~~~~~l~~~lgl~~~~ 107 (448)
+|+|||||++||+||+.|+++|+ +|+|||+++++||++.|.. .+|+.+|.|+|++.. .++++.++++++|+....
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~-~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~---~~~~~~~l~~~lg~~~~~ 76 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGH-TPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFG---AYPNMLQLLKELNIEDRL 76 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-cEEEEecCCCCCCCcceeECCCCCEEEcCcceecc---CCchHHHHHHHcCCccce
Confidence 58999999999999999999999 7999999999999999974 578999999999998 788999999999987544
Q ss_pred cccccccceEEec---CCcc-------c--cHHHHHHHHHHH-----HHhHHHHHHHhhh----ccCCCCCCCcccHHHH
Q 013178 108 SDYANLTSNIYKQ---DGGL-------Y--QKHVVESAVRIA-----KTRDAFCTNLSKM----LSSETTRDDDTSILGS 166 (448)
Q Consensus 108 ~~~~~~~~~~~~~---~g~~-------~--~~~~~~~~~~~~-----~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 166 (448)
...... .++.. .+.. + +...+....... .........+... .+... ..++.++.++
T Consensus 77 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~ 153 (453)
T TIGR02731 77 QWKSHS--MIFNQPDKPGTFSRFDFPDIPAPFNGVAAILRNNDMLTWPEKIKFAIGLLPAIVRGQKYVE-EQDKYTVTEW 153 (453)
T ss_pred eecCCc--eEEecCCCCcceeeccCCCCCCCHHHHHHHhcCcCCCCHHHHHHHHHHhHHHHhcCccchh-hhccCCHHHH
Confidence 322211 12211 1111 1 111111111000 0000000001100 00000 1134555554
Q ss_pred HHhhcCCCCChHHHHHHHHhhccccCCCcccccccccCCCcc-cc--cCCCCeeeeeCCCc-hHHHHHHHHHhhhccccc
Q 013178 167 QRLLKEVPMTPLEMAIDYFFNDYEDAEPPRITSLKTTYPRNQ-LV--DFGEDSYFVADPRG-FESVVHSVAKQFLSHRHQ 242 (448)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~-~~--~~~~~~~~~~~~~G-~~~l~~~l~~~l~~~~~~ 242 (448)
.+-.. ..+...+.+...+... .++.+++..|+...+.... +. ..+.... ...++ .+.++++|.+.+.+
T Consensus 154 l~~~~-~~~~~~~~~~~pl~~~-~~~~~p~~~S~~~~~~~l~~~~~~~~g~~~~--~~~g~~~~~l~~~l~~~l~~---- 225 (453)
T TIGR02731 154 LRKQG-VPERVNDEVFIAMSKA-LNFINPDELSMTVVLTALNRFLQERHGSKMA--FLDGAPPERLCQPIVDYITS---- 225 (453)
T ss_pred HHHcC-CCHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHhcCCCCeeE--eecCCChHHHHHHHHHHHHh----
Confidence 33211 1112222233332221 1344555556544332111 01 1111111 11233 46788888888865
Q ss_pred ccCCCceecCceeEEEEecCCc-E-EEEeCCCc-----EEEeCEEEEeechhhccCCCccccCCCC-HHHHHHHhhcCCc
Q 013178 243 VIRDPRLKLNKVVRNISYSKDK-V-TVKTEDGS-----VYQANYAIVSVSIGVLQSDFIEFTPNLP-LWKKLAINNFNMA 314 (448)
Q Consensus 243 ~~~g~~i~~~~~V~~I~~~~~~-v-~V~~~~g~-----~~~ad~VI~a~p~~~l~~~~~~~~p~l~-~~~~~~~~~~~~~ 314 (448)
.|++|++|++|++|..++++ + .|.+.+|+ ++.||+||+|+|++.+.+++ .+.++ ....+.++++++.
T Consensus 226 --~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~~~~lL---~~~~~~~~~~~~~~~~~~~ 300 (453)
T TIGR02731 226 --RGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVDIFKLLL---PQPWKQMPFFQKLNGLEGV 300 (453)
T ss_pred --cCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCHHHHHhhC---chhhhcCHHHHHhhcCCCC
Confidence 58999999999999875443 4 46665554 78999999999999887632 11222 2345566778888
Q ss_pred ceeEEEEEcCCCCCCCCCCcceEEEecccCCccccccc----ccccCCCCcEEEEEecchhhhhhhcCChHHHHHHHHHH
Q 013178 315 IYTKIFMKFPYKFWPTGPGTEFFIYAHERRGYFPIWQH----LENEMPGSNILFVTVTDEESRRVERQSDEKTKAEIMNN 390 (448)
Q Consensus 315 ~~~~v~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~a~~~~~~~~~e~~~~~~~~ 390 (448)
++.++++.|++++|.. . .+ ++.... .....+.. .+..+++..++.+++.. +..+.+++++|+++.++ +
T Consensus 301 ~~~~v~l~~~~~~~~~--~-~~-~~~~~~-~~~~~~~~s~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~ee~~~~v~-~ 372 (453)
T TIGR02731 301 PVINVHIWFDRKLTTV--D-HL-LFSRSP-LLSVYADMSETCKEYADPDKSMLELVFAP--AADWIGRSDEEIIDATM-A 372 (453)
T ss_pred cEEEEEEEEccccCCC--C-ce-eeeCCC-cceeecchhhhChhhcCCCCeEEEEEecC--hhhhhcCCHHHHHHHHH-H
Confidence 9999999999998864 1 22 222211 11000110 11223444444444332 34678899999999999 9
Q ss_pred HHHHHhCCCC--CCCceEeeccCCCCCCCCcccCCCCCCCCHHHHHHHhcccCceEEccC
Q 013178 391 VLRKLFGNKI--PEPQSIFVPRWWSNRFFNGSYSNWPNGFTQQSYKELKVSICKLHVGLT 448 (448)
Q Consensus 391 ~L~~~~g~~~--~~~~~~~~~~W~~~~~~~g~~~~~~~g~~~~~~~~~~~p~~~i~fAG~ 448 (448)
+|+++||... .++.+...++|..+||+. | ..+||. .+..+.+++|++||||||+
T Consensus 373 ~L~~~~~~~~~~~~~~~~~~~~~~~~p~a~--~-~~~pg~-~~~~~~~~~p~~~l~~AG~ 428 (453)
T TIGR02731 373 ELAKLFPNHIKADSPAKILKYKVVKTPRSV--Y-KTTPGR-QQYRPHQKTPIPNFFLAGD 428 (453)
T ss_pred HHHHhCCcccCCCCCceEEEEEEEECCCce--e-ccCCCC-hhhCccccCccCCEEEeeh
Confidence 9999997532 246667888999999994 4 356784 5678999999999999994
No 20
>PLN02612 phytoene desaturase
Probab=100.00 E-value=3e-31 Score=265.40 Aligned_cols=400 Identities=15% Similarity=0.132 Sum_probs=236.1
Q ss_pred CCCCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEEce-eCCceeeecceeccCCCCCCCHHHHHHHH
Q 013178 22 PTSPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGN-IGGHTIELGANWVNSGGPKSSPSLQIAKK 100 (448)
Q Consensus 22 ~~~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~~-~~g~~~d~G~~~~~~~~~~~~~~~~l~~~ 100 (448)
+......+|+|||||++||+||++|+++|+ +|+|+|+++++||++.++. .+|+.+|.|+|++.. .++++.+++++
T Consensus 88 ~~~~~~~~v~iiG~G~~Gl~~a~~l~~~g~-~~~~~e~~~~~gG~~~s~~~~~G~~~D~G~h~~~g---~~~~~~~ll~e 163 (567)
T PLN02612 88 PRPAKPLKVVIAGAGLAGLSTAKYLADAGH-KPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFG---AYPNVQNLFGE 163 (567)
T ss_pred CCCCCCCCEEEECCCHHHHHHHHHHHhcCC-eEEEEecCCCCCCcceeeEcCCCCEEcCCceEEeC---CCchHHHHHHH
Confidence 445567899999999999999999999999 7999999999999999976 478999999999998 78889999999
Q ss_pred cCCceeecccccccceEEec-CCcc--------ccHHHHHHHHHHHHH--hHHHHHHHh------hhcc---CCCCCCCc
Q 013178 101 IKLKTFYSDYANLTSNIYKQ-DGGL--------YQKHVVESAVRIAKT--RDAFCTNLS------KMLS---SETTRDDD 160 (448)
Q Consensus 101 lgl~~~~~~~~~~~~~~~~~-~g~~--------~~~~~~~~~~~~~~~--~~~~~~~~~------~~~~---~~~~~~~~ 160 (448)
+|+..............+.. .++. .+ ..+......+.. ...+.+.+. .... ......++
T Consensus 164 lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~P-~~l~~~~~~l~~~~~ls~~~kl~~~~~~~~~~~~~~~~~~~~d~ 242 (567)
T PLN02612 164 LGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLP-APLNGIWAILRNNEMLTWPEKIKFAIGLLPAIVGGQAYVEAQDG 242 (567)
T ss_pred hCCcccceecccceEEEecCCCCceeeCcCchhcC-ChhhhhHHHHhcCccCCHHHHHHHHHhhhHHhcccchhhhhcCc
Confidence 99976543222111111110 1111 11 111111111110 001111110 0000 00001134
Q ss_pred ccHHHHHHhhcCCCCChHHHHHHHHhhccccCCCcccccccccCCCc-ccccCCCCeeeeeCCCch-HHHHHHHHHhhhc
Q 013178 161 TSILGSQRLLKEVPMTPLEMAIDYFFNDYEDAEPPRITSLKTTYPRN-QLVDFGEDSYFVADPRGF-ESVVHSVAKQFLS 238 (448)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~-~~~~~~~~~~~~~~~~G~-~~l~~~l~~~l~~ 238 (448)
.++.++.+-... .....+.++..+... .+..+++..|+..++... .+.............++. ..+.++|++.+.+
T Consensus 243 ~Sv~e~l~~~~~-~~~~~~~~~~~l~~~-~~~~~p~~~S~~~~l~~l~~~l~~~~gs~~~~~~G~~~~~l~~~l~~~l~~ 320 (567)
T PLN02612 243 LSVKEWMRKQGV-PDRVNDEVFIAMSKA-LNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCMPIVDHFQS 320 (567)
T ss_pred CcHHHHHHhcCC-CHHHHHHHHHHHHHH-hcCCCHHHhhHHHHHHHHHHHHhccCCceEeeecCCchHHHHHHHHHHHHh
Confidence 555554333221 111222233332211 134455556655443211 111111111222224444 6788999888866
Q ss_pred ccccccCCCceecCceeEEEEecCCc--EEEEeCCCcEEEeCEEEEeechhhccCCCccccCCCCHHHHHHHhhcCCcce
Q 013178 239 HRHQVIRDPRLKLNKVVRNISYSKDK--VTVKTEDGSVYQANYAIVSVSIGVLQSDFIEFTPNLPLWKKLAINNFNMAIY 316 (448)
Q Consensus 239 ~~~~~~~g~~i~~~~~V~~I~~~~~~--v~V~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~p~l~~~~~~~~~~~~~~~~ 316 (448)
.|++|++|++|++|+.++++ +.|.+.+|++++||+||+|+|+..+++++... ..+....+.++++.+.++
T Consensus 321 ------~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~~~l~~Ll~~~--~~~~~~~~~l~~l~~~~v 392 (567)
T PLN02612 321 ------LGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPVDILKLLLPDQ--WKEIPYFKKLDKLVGVPV 392 (567)
T ss_pred ------cCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCHHHHHHhCcch--hcCcHHHHHHHhcCCCCe
Confidence 58999999999999986555 34777788889999999999999888633211 112233455677888999
Q ss_pred eEEEEEcCCCCCCCCCCcceEEEecccCCccccccc-c----cccCCCCcEEEEEecchhhhhhhcCChHHHHHHHHHHH
Q 013178 317 TKIFMKFPYKFWPTGPGTEFFIYAHERRGYFPIWQH-L----ENEMPGSNILFVTVTDEESRRVERQSDEKTKAEIMNNV 391 (448)
Q Consensus 317 ~~v~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~l~~~~~~~~a~~~~~~~~~e~~~~~~~~~ 391 (448)
+++++.|++++|.. .. .++..... ...++.. + +..+++..++...+. .+..|.+++++|+++.++ ++
T Consensus 393 ~~v~l~~dr~~~~~--~~-~~~~~~~~--~~~~~~d~S~~~~~~~~~~~~ll~~~~~--~a~~~~~~sdeei~e~vl-~~ 464 (567)
T PLN02612 393 INVHIWFDRKLKNT--YD-HLLFSRSP--LLSVYADMSTTCKEYYDPNKSMLELVFA--PAEEWISRSDEDIIDATM-KE 464 (567)
T ss_pred EEEEEEECcccCCC--CC-ceeecCCC--CceeehhhhhcchhhcCCCCeEEEEEEE--cChhhhcCCHHHHHHHHH-HH
Confidence 99999999999864 11 22232211 1111111 0 011234444444332 456899999999999999 99
Q ss_pred HHHHhCCCCC-C--CceEeeccCCCCCCCCcccCCCCCCCCHHHHHHHhcccCceEEccC
Q 013178 392 LRKLFGNKIP-E--PQSIFVPRWWSNRFFNGSYSNWPNGFTQQSYKELKVSICKLHVGLT 448 (448)
Q Consensus 392 L~~~~g~~~~-~--~~~~~~~~W~~~~~~~g~~~~~~~g~~~~~~~~~~~p~~~i~fAG~ 448 (448)
|+++||.... + ...+....|...|++. |. ..||.. ..+|..++|.+||||||.
T Consensus 465 L~~lfp~~~~~~~~~~~i~~~~~v~~P~a~--~~-~~pg~~-~~rp~~~tPi~~l~lAGd 520 (567)
T PLN02612 465 LAKLFPDEISADQSKAKILKYHVVKTPRSV--YK-TVPNCE-PCRPLQRSPIEGFYLAGD 520 (567)
T ss_pred HHHHCCcccccccCCceEEEEEEeccCCce--EE-eCCCCc-ccCccccCccCCEEEeec
Confidence 9999976422 2 2233444455556542 22 234532 346777899999999993
No 21
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=99.96 E-value=1.6e-27 Score=234.34 Aligned_cols=386 Identities=16% Similarity=0.131 Sum_probs=224.7
Q ss_pred cEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEEce-eCCceeeecceeccCCCCCCCHHHHHHHHcCCceee
Q 013178 29 SVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGN-IGGHTIELGANWVNSGGPKSSPSLQIAKKIKLKTFY 107 (448)
Q Consensus 29 dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~~-~~g~~~d~G~~~~~~~~~~~~~~~~l~~~lgl~~~~ 107 (448)
+|+|||||++||+||+.|+++|+ +|+|+|+++++||++.++. ..|+.+|.|+|+++. .+.++.++++++|+....
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~-~v~v~E~~~~~GG~~~~~~~~~g~~~d~G~~~~~~---~~~~~~~~~~~lg~~~~~ 76 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGH-EVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFFG---CYANLFRLMKKVGAEDNL 76 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-cEEEEEecCCCCceeeeeecCCCceEeeceEEecC---chHHHHHHHHHcCCcccc
Confidence 58999999999999999999999 7999999999999999974 679999999999998 678899999999998654
Q ss_pred cccccccceEEe-cCCcc----------ccHHHHHHHHHHHHHhHHHHHHH-----------hhhc---c----CCCCCC
Q 013178 108 SDYANLTSNIYK-QDGGL----------YQKHVVESAVRIAKTRDAFCTNL-----------SKML---S----SETTRD 158 (448)
Q Consensus 108 ~~~~~~~~~~~~-~~g~~----------~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~---~----~~~~~~ 158 (448)
...... ..|. .+++. .|......++.. ....+..++ ...+ . ... ..
T Consensus 77 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~P~~~~~~~l~~--~~ls~~dklr~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 151 (474)
T TIGR02732 77 LLKEHT--HTFVNKGGDIGELDFRFATGAPFNGLKAFFTT--SQLKWVDKLRNALALGTSPIVRGLVDYDGAMKTIR-DL 151 (474)
T ss_pred ccccce--eEEEcCCCcccccccCCCCCCchhhhHHHhcC--CCCCHHHHHHHHHHhhhhHHHhhccccchhhhhhh-hh
Confidence 332211 1222 12322 111111111100 001111110 0000 0 000 11
Q ss_pred CcccHHHHHHhhcCCCCChHHHHHHHHhhccccCCCcccccccccCCCc-ccccCCCCeeeeeCCCchHH-HHHHHHHhh
Q 013178 159 DDTSILGSQRLLKEVPMTPLEMAIDYFFNDYEDAEPPRITSLKTTYPRN-QLVDFGEDSYFVADPRGFES-VVHSVAKQF 236 (448)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~-~~~~~~~~~~~~~~~~G~~~-l~~~l~~~l 236 (448)
++.++.++.+-... .+...+.+++.+... .+..+++..|+..++... .+........+..+++|++. +.+.+.+.|
T Consensus 152 ~~~t~~~~l~~~~~-~~~~~~~~~~Pll~~-~~~~~~~~~Sa~~~~~~~~~~~~~~~~s~~~~~~g~~~~~l~~pl~~~L 229 (474)
T TIGR02732 152 DKISFAEWFLSHGG-SLGSIKRMWDPIAYA-LGFIDCENISARCMLTIFMLFAAKTEASKLRMLKGSPDKYLTKPILEYI 229 (474)
T ss_pred ccccHHHHHHHcCC-CHHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHhCCCcceeeeecCCcchhHHHHHHHHH
Confidence 33444444322211 111234444443321 245666777766553311 11111111123333566665 556688887
Q ss_pred hcccccccCCCceecCceeEEEEecC--Cc---EE-EEeCCC---cEEEeCEEEEeechhhccCCCccccCCCC--HHHH
Q 013178 237 LSHRHQVIRDPRLKLNKVVRNISYSK--DK---VT-VKTEDG---SVYQANYAIVSVSIGVLQSDFIEFTPNLP--LWKK 305 (448)
Q Consensus 237 ~~~~~~~~~g~~i~~~~~V~~I~~~~--~~---v~-V~~~~g---~~~~ad~VI~a~p~~~l~~~~~~~~p~l~--~~~~ 305 (448)
.+ .|++|+++++|++|+.++ ++ +. |.+.+| +++.+|+||+|+|+..+++++ |+++ ....
T Consensus 230 ~~------~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~~~~Ll----~~~~~~~~~~ 299 (474)
T TIGR02732 230 EA------RGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPGIKRLL----PQEWRQFEEF 299 (474)
T ss_pred HH------CCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChHHHHhhC----ChhhhcCHHH
Confidence 76 589999999999999754 22 32 445433 468999999999999888743 2221 1245
Q ss_pred HHHhhcCCcceeEEEEEcCCCCCCCCC-C----------cceEEEecccCCccccccc----cc-c-cCCCC-cEEEEEe
Q 013178 306 LAINNFNMAIYTKIFMKFPYKFWPTGP-G----------TEFFIYAHERRGYFPIWQH----LE-N-EMPGS-NILFVTV 367 (448)
Q Consensus 306 ~~~~~~~~~~~~~v~l~~~~~~w~~~~-~----------~~~~~~~~~~~~~~~~~~~----~~-~-~~~~~-~~l~~~~ 367 (448)
..+..+.+.++..+++.|+++.-.... . ...+++.. ..-+..+.. .. . ..++. .+|..++
T Consensus 300 ~~l~~l~~~pi~~v~l~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (474)
T TIGR02732 300 DNIYKLDAVPVATVQLRYDGWVTELQDLAKRKQLKRAAGLDNLLYTA--DADFSCFADLALTSPDDYYKEGQGSLLQCVL 377 (474)
T ss_pred hhHhcCCCCCeEEEEEEeccccccccchhhhhccccccccccccccc--CccceeeehhhccCHHHHhccCCCeEEEEEE
Confidence 677889999999999999864322100 0 00000000 000011000 00 0 11233 3344444
Q ss_pred cchhhhhhhcCChHHHHHHHHHHHHHHHhCCC-CCCCceEeeccCCCCCCCCcccCCCCCCCCHHHHHHHhcccCceEEc
Q 013178 368 TDEESRRVERQSDEKTKAEIMNNVLRKLFGNK-IPEPQSIFVPRWWSNRFFNGSYSNWPNGFTQQSYKELKVSICKLHVG 446 (448)
Q Consensus 368 ~~~~a~~~~~~~~~e~~~~~~~~~L~~~~g~~-~~~~~~~~~~~W~~~~~~~g~~~~~~~g~~~~~~~~~~~p~~~i~fA 446 (448)
... ..+.+++++|+++.++ ++|+++||.. ..++.+..+.+.. .+.....||.. ..+|..++|.+|+|+|
T Consensus 378 ~~~--~~~~~~~~~~l~~~~~-~~L~~~~p~~~~~~~~~~~v~~~~------~a~~~~~pg~~-~~~P~~~t~~~~l~lA 447 (474)
T TIGR02732 378 TPG--DPWMPESNEEIAKRVD-KQVRALFPSSKNLKLTWSSVVKLA------QSLYREAPGMD-PFRPDQKTPISNFFLA 447 (474)
T ss_pred eCh--hhhcCCCHHHHHHHHH-HHHHHhCccccCCceeEEEEEEec------CceeccCCCCc-ccCCCCCCCCCCeEEe
Confidence 432 3677899999999999 9999999742 2234444444444 22233458874 4468889999999999
Q ss_pred c
Q 013178 447 L 447 (448)
Q Consensus 447 G 447 (448)
|
T Consensus 448 G 448 (474)
T TIGR02732 448 G 448 (474)
T ss_pred c
Confidence 9
No 22
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=99.96 E-value=3.7e-27 Score=231.10 Aligned_cols=373 Identities=16% Similarity=0.132 Sum_probs=222.8
Q ss_pred HHHHHHHHcCCCcEEEEecCCCCCceEEEceeCCc--eeeecceeccCCCCCCCHHHHHHHHcCCceeecccccccceEE
Q 013178 41 MAAKTLEEAGYKDFIILEASSRVGGRLHKGNIGGH--TIELGANWVNSGGPKSSPSLQIAKKIKLKTFYSDYANLTSNIY 118 (448)
Q Consensus 41 ~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~~~~g~--~~d~G~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~ 118 (448)
+||+.|+++|+ +|+|||+++++||++.|.+.+|+ .+|.|+|+++. .+.++.++++++|+......... ....+
T Consensus 1 ~AA~~L~~~G~-~v~vlEa~~~~GG~~~t~~~~g~~~~~d~G~~~~~~---~~~~~~~l~~~lgl~~~~~~~~~-~~~~~ 75 (419)
T TIGR03467 1 SAAVELARAGA-RVTLFEARPRLGGRARSFEDGGLGQTIDNGQHVLLG---AYTNLLALLRRIGAEPRLQGPRL-PLPFY 75 (419)
T ss_pred ChHHHHHhCCC-ceEEEecCCCCCCceeEeecCCCCcceecCCEEEEc---ccHHHHHHHHHhCCchhhhcccC-Cccee
Confidence 58999999999 79999999999999999988755 49999999998 78889999999999865432111 11122
Q ss_pred ecCCcc-------c--cHHHHHHHHHH----HHHhHHHHHHHhhhccCCCCCCCcccHHHHHHhhcCCCCChHHHHHHHH
Q 013178 119 KQDGGL-------Y--QKHVVESAVRI----AKTRDAFCTNLSKMLSSETTRDDDTSILGSQRLLKEVPMTPLEMAIDYF 185 (448)
Q Consensus 119 ~~~g~~-------~--~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (448)
..++.. + |......+... .....+....+...........++.++.++.+-.. ..+...+.+...+
T Consensus 76 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~-~~~~~~~~~~~p~ 154 (419)
T TIGR03467 76 DPGGRLSRLRLSRLPAPLHLARGLLRAPGLSWADKLALARALLALRRTRFRALDDTTVGDWLQAAG-QSERLIERLWEPL 154 (419)
T ss_pred cCCCCceeecCCCCCCCHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhcCccccCCCCHHHHHHHcC-CCHHHHHHHHHHH
Confidence 212221 1 11111110000 00000111111110000000124566665543211 1112223233332
Q ss_pred hhccccCCCcccccccccCCCcc--cccCCCCeeeeeCCCchHHHHHH-HHHhhhcccccccCCCceecCceeEEEEecC
Q 013178 186 FNDYEDAEPPRITSLKTTYPRNQ--LVDFGEDSYFVADPRGFESVVHS-VAKQFLSHRHQVIRDPRLKLNKVVRNISYSK 262 (448)
Q Consensus 186 ~~~~~~~~~~~~~s~~~~~~~~~--~~~~~~~~~~~~~~~G~~~l~~~-l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~ 262 (448)
.. ..++.+++..|+........ +........+..+++|++.++.. |++.+++ .|++|++|++|++|+.++
T Consensus 155 ~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~l~~~l~~------~g~~i~~~~~V~~i~~~~ 227 (419)
T TIGR03467 155 LL-SALNTPPERASAALAAKVLRDSFLAGRAASDLLLPRVPLSELFPEPARRWLDS------RGGEVRLGTRVRSIEANA 227 (419)
T ss_pred HH-HHcCCCHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCHHHHHHHHHHHHHHH------cCCEEEcCCeeeEEEEcC
Confidence 21 12456666666543322110 11011112344557898877644 8888765 588999999999999998
Q ss_pred CcEEEEe-CCCcEEEeCEEEEeechhhccCCCccccCCCCHHHHHHHhhcCCcceeEEEEEcCCCCCCCCCCcceEEEec
Q 013178 263 DKVTVKT-EDGSVYQANYAIVSVSIGVLQSDFIEFTPNLPLWKKLAINNFNMAIYTKIFMKFPYKFWPTGPGTEFFIYAH 341 (448)
Q Consensus 263 ~~v~V~~-~~g~~~~ad~VI~a~p~~~l~~~~~~~~p~l~~~~~~~~~~~~~~~~~~v~l~~~~~~w~~~~~~~~~~~~~ 341 (448)
+++.+.. .+|+++.||+||+|+|+..+.+++ |. +.+.+++++++|.++.++++.|++++|.+.. +....+
T Consensus 228 ~~~~~~~~~~g~~~~~d~vi~a~p~~~~~~ll----~~--~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~---~~~~~~ 298 (419)
T TIGR03467 228 GGIRALVLSGGETLPADAVVLAVPPRHAASLL----PG--EDLGALLTALGYSPITTVHLRLDRAVRLPAP---MVGLVG 298 (419)
T ss_pred CcceEEEecCCccccCCEEEEcCCHHHHHHhC----CC--chHHHHHhhcCCcceEEEEEEeCCCcCCCCC---eeeecC
Confidence 8866543 467789999999999999998632 22 1456778999999999999999999986411 211111
Q ss_pred ccCCcccccccccccCCCCcEEEEEecchhhhhhhcCChHHHHHHHHHHHHHHHhCCCC-CCCceEeeccCCCCCCCCcc
Q 013178 342 ERRGYFPIWQHLENEMPGSNILFVTVTDEESRRVERQSDEKTKAEIMNNVLRKLFGNKI-PEPQSIFVPRWWSNRFFNGS 420 (448)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~e~~~~~~~~~L~~~~g~~~-~~~~~~~~~~W~~~~~~~g~ 420 (448)
. ....++... ...+...++..++.+ +..+..++++|+++.++ ++|+++||... ..+....+.+|... .
T Consensus 299 ~--~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~e~~~~~~l-~~l~~~~~~~~~~~~~~~~~~~~~~~-----~ 367 (419)
T TIGR03467 299 G--LAQWLFDRG-QLAGEPGYLAVVISA--ARDLVDLPREELADRIV-AELRRAFPRVAGAKPLWARVIKEKRA-----T 367 (419)
T ss_pred C--ceeEEEECC-cCCCCCCEEEEEEec--chhhccCCHHHHHHHHH-HHHHHhcCccccCCccceEEEEccCC-----c
Confidence 1 111112111 111223455555443 34677889999999999 99999997542 34555566777642 2
Q ss_pred cCCCCCCCCHHHHHHHhcccCceEEccC
Q 013178 421 YSNWPNGFTQQSYKELKVSICKLHVGLT 448 (448)
Q Consensus 421 ~~~~~~g~~~~~~~~~~~p~~~i~fAG~ 448 (448)
|. ..||.. ..++.+.+|.+||||||.
T Consensus 368 ~~-~~~g~~-~~~~~~~~~~~~l~~aGd 393 (419)
T TIGR03467 368 FA-ATPGLN-RLRPGARTPWPNLFLAGD 393 (419)
T ss_pred cc-cCCccc-ccCCCCCCCcCCEEEecc
Confidence 22 336643 445667789999999994
No 23
>PLN02487 zeta-carotene desaturase
Probab=99.96 E-value=6.1e-27 Score=231.46 Aligned_cols=390 Identities=15% Similarity=0.103 Sum_probs=236.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEEce-eCCceeeecceeccCCCCCCCHHHHHHHHcCCc
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGN-IGGHTIELGANWVNSGGPKSSPSLQIAKKIKLK 104 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~~-~~g~~~d~G~~~~~~~~~~~~~~~~l~~~lgl~ 104 (448)
++++|+|||||++||++|+.|+++|+ +|+|+|+++++||++.++. ..|+.+|.|.|++.+ .+++++++++++|+.
T Consensus 74 ~~~~v~iiG~G~~Gl~~a~~L~~~g~-~v~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~~---~~~~~~~ll~~LGl~ 149 (569)
T PLN02487 74 PKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFG---CYNNLFRLMKKVGAD 149 (569)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCC-eeEEEecCCCCCCceeeeeecCCcEEecceeEecC---CcHHHHHHHHhcCCc
Confidence 34699999999999999999999999 8999999999999999985 578999999999998 678999999999998
Q ss_pred eeecccccccceEEecCCcc------ccHHHHHHHHHHHH--HhHHHHHHHhhh-----------c-c------CCCCCC
Q 013178 105 TFYSDYANLTSNIYKQDGGL------YQKHVVESAVRIAK--TRDAFCTNLSKM-----------L-S------SETTRD 158 (448)
Q Consensus 105 ~~~~~~~~~~~~~~~~~g~~------~~~~~~~~~~~~~~--~~~~~~~~~~~~-----------~-~------~~~~~~ 158 (448)
......... ...+..+|.. ++.+.....+..+. ....+.+++... + . ... ..
T Consensus 150 ~~~~~~~~~-~~~~~~~g~~~~~~~~~p~~~pl~~~~~~l~~~~Ls~~dklr~~~~l~~~~~~~al~~~~~~~~~~~-~~ 227 (569)
T PLN02487 150 ENLLVKDHT-HTFVNKGGDVGELDFRFPVGAPLHGIKAFLTTNQLEPYDKARNALALATSPVVRALVDPDGAMRDIR-DL 227 (569)
T ss_pred ccccccccc-eeEEecCCEEeeeccCCCCCchhhhHHHHHcCCCCCHHHHHhhcccccccchhhhccCccccccccc-cc
Confidence 665432221 1112223332 12111000011110 001111111110 0 0 000 12
Q ss_pred CcccHHHHHHhhcCCCCChHHHHHHHHhhccccCCCcccccccccCCCccccc-CCCCeeeeeCCCchHH-HHHHHHHhh
Q 013178 159 DDTSILGSQRLLKEVPMTPLEMAIDYFFNDYEDAEPPRITSLKTTYPRNQLVD-FGEDSYFVADPRGFES-VVHSVAKQF 236 (448)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~-~~~~~~~~~~~~G~~~-l~~~l~~~l 236 (448)
++.++.++.+-... .....+.+++.+.. ..+..+++..|+........+.. ......+..+++|+.. +++.+++.|
T Consensus 228 d~~sv~~~l~r~~g-~~~~~~~l~dPll~-~~~~~~~d~~SA~~~~~vl~~~~~~~~~~~l~~~~Gg~~~~l~~pl~~~L 305 (569)
T PLN02487 228 DDISFSDWFTSHGG-TRMSIKRMWDPIAY-ALGFIDCDNISARCMLTIFSLFATKTEASLLRMLKGSPDVRLSGPIAKYI 305 (569)
T ss_pred cCCcHHHHHHHhCC-CHHHHHHHHHHHHH-HhhCCCHHHHHHHHHHHHHHHHhhcCCcceeeecCCCchHHHHHHHHHHH
Confidence 34555444322211 01123344444322 12566777777654433322211 1111224455899985 999999999
Q ss_pred hcccccccCCCceecCceeEEEEecC--Cc---E-EEEe---CCCcEEEeCEEEEeechhhccCCCccccCCCCH--HHH
Q 013178 237 LSHRHQVIRDPRLKLNKVVRNISYSK--DK---V-TVKT---EDGSVYQANYAIVSVSIGVLQSDFIEFTPNLPL--WKK 305 (448)
Q Consensus 237 ~~~~~~~~~g~~i~~~~~V~~I~~~~--~~---v-~V~~---~~g~~~~ad~VI~a~p~~~l~~~~~~~~p~l~~--~~~ 305 (448)
++ .|++|+++++|++|..++ ++ + .|.+ .++.++.+|.||+|+|+..+++++ |.... ...
T Consensus 306 ~~------~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~~~~~Ll----p~~~~~~~~~ 375 (569)
T PLN02487 306 TD------RGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVPGIKRLL----PEQWREYEFF 375 (569)
T ss_pred HH------cCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHHHHHHhC----CchhhccHHH
Confidence 87 699999999999999863 22 3 3555 234568999999999999888743 33211 135
Q ss_pred HHHhhcCCcceeEEEEEcCCCCCCCC-------------CCcceEEEecccCCccccccc-----cccc--CCCCcEEEE
Q 013178 306 LAINNFNMAIYTKIFMKFPYKFWPTG-------------PGTEFFIYAHERRGYFPIWQH-----LENE--MPGSNILFV 365 (448)
Q Consensus 306 ~~~~~~~~~~~~~v~l~~~~~~w~~~-------------~~~~~~~~~~~~~~~~~~~~~-----~~~~--~~~~~~l~~ 365 (448)
..+..+.+.+++.+++.|+++.-... .+. ++ +.. ..-+.++.. ..+. ...+.+|..
T Consensus 376 ~~l~~L~~~pi~tv~L~~d~~v~~~~~~~~~r~l~~~~g~~~-~~-~~~--~~~~~f~~di~l~~~~~~~~~~~g~~l~~ 451 (569)
T PLN02487 376 DNIYKLVGVPVVTVQLRYNGWVTEMQDLELSRQLRRAAGLDN-LL-YSA--DADFSCFADLALTSPEDYYKEGEGSLIQA 451 (569)
T ss_pred hHHhcCCCeeEEEEEEEecccccccccccccccccccccccc-cc-ccc--CCCcceEeeeecCCHHHHcccCCceEEEE
Confidence 66788888999999999987533210 000 00 000 000111000 0000 122356666
Q ss_pred EecchhhhhhhcCChHHHHHHHHHHHHHHHhCCCC-CCCceEeeccCCCCCCCCcccCCCCCCCCHHHHHHHhcccCceE
Q 013178 366 TVTDEESRRVERQSDEKTKAEIMNNVLRKLFGNKI-PEPQSIFVPRWWSNRFFNGSYSNWPNGFTQQSYKELKVSICKLH 444 (448)
Q Consensus 366 ~~~~~~a~~~~~~~~~e~~~~~~~~~L~~~~g~~~-~~~~~~~~~~W~~~~~~~g~~~~~~~g~~~~~~~~~~~p~~~i~ 444 (448)
++... ..+..++++|+++.++ ++|+++||... .++.+..+.+..+ +-....||+. ..+|..++|..|+|
T Consensus 452 vis~a--~~~~~~~~~ei~~~~~-~~L~~~~p~~~~~~v~~~~vv~~~~------at~~~~pg~~-~~RP~~~T~~~nl~ 521 (569)
T PLN02487 452 VLTPG--DPYMPLSNDKIVEKVH-KQVLELFPSSRGLEVTWSSVVKIGQ------SLYREAPGMD-PFRPDQKTPISNFF 521 (569)
T ss_pred EEcCC--ccccCCCHHHHHHHHH-HHHHHhCcccccCceEEEEEEEccC------ceeccCCCcc-ccCCCCCCCCCCEE
Confidence 66533 3688899999999999 99999996532 2344445555553 2223467764 45688999999999
Q ss_pred Ecc
Q 013178 445 VGL 447 (448)
Q Consensus 445 fAG 447 (448)
+||
T Consensus 522 LAG 524 (569)
T PLN02487 522 LAG 524 (569)
T ss_pred EeC
Confidence 999
No 24
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=99.95 E-value=7.8e-26 Score=225.26 Aligned_cols=354 Identities=14% Similarity=0.116 Sum_probs=191.2
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEEceeCCceeeecceeccCCCCCCCHHHHHHHHcCCcee
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNIGGHTIELGANWVNSGGPKSSPSLQIAKKIKLKTF 106 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~l~~~lgl~~~ 106 (448)
..||+|||||++||+||..|+++|+ +|+|||+++++||++.+++.+|+.+|.|++++..++ ....+..+++++|+...
T Consensus 1 ~~dvvIIGaG~~GL~aa~~La~~G~-~v~vlE~~~~~GG~~~t~~~~G~~fD~G~~~~~~~~-~~~~~~~~~~~lg~~~~ 78 (492)
T TIGR02733 1 ETSVVVIGAGIAGLTAAALLAKRGY-RVTLLEQHAQPGGCAGTFRRRGFTFDVGATQVAGLE-PGGIHARIFRELGIPLP 78 (492)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCC-eEEEEecCCCCCCccceeccCCEEEeecceEEEecC-cCCHHHHHHHHcCCCCc
Confidence 3689999999999999999999999 799999999999999999999999999999987621 23456788899998743
Q ss_pred -ecccccccceEEecCC-cccc----HHHH-HHHHHHHH-------HhHHHHHHHhhhccCCC---CC------------
Q 013178 107 -YSDYANLTSNIYKQDG-GLYQ----KHVV-ESAVRIAK-------TRDAFCTNLSKMLSSET---TR------------ 157 (448)
Q Consensus 107 -~~~~~~~~~~~~~~~g-~~~~----~~~~-~~~~~~~~-------~~~~~~~~~~~~~~~~~---~~------------ 157 (448)
....+. ...++..+| ..+. .... ..+...+. ...+..+.....+.... ..
T Consensus 79 ~~~~~d~-~~~~~~~dg~~~~~~~~d~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (492)
T TIGR02733 79 EAKILDP-ACAVDLPDGSEPIPLWHDPDRWQKERERQFPGSERFWQLCSQLHQSNWRFAGRDPVLPPRNYWDLLQLVSAL 157 (492)
T ss_pred ccccCCC-CcEEEECCCceEeeeecCHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhc
Confidence 111111 122333354 2221 1111 11111100 00000000000000000 00
Q ss_pred ---------CCcccHHHHHHhhcCCCCChHHHHHHHHhhccccCCCcccccccccCCCcccccCCCCeeeeeCCCchHHH
Q 013178 158 ---------DDDTSILGSQRLLKEVPMTPLEMAIDYFFNDYEDAEPPRITSLKTTYPRNQLVDFGEDSYFVADPRGFESV 228 (448)
Q Consensus 158 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~G~~~l 228 (448)
....++.++.+-........++.++......+ .+.++...+.........+... ......++||++.|
T Consensus 158 ~~~~~~~~~~~~~s~~~~l~~~~~~~~~~lr~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~G~~~~~GG~~~l 234 (492)
T TIGR02733 158 RPDTLLTGPLSLLTVADLLRLCGLGDDRRLRRFLDLQLKLY-SQEDADETAALYGATVLQMAQA--PHGLWHLHGSMQTL 234 (492)
T ss_pred ChhhhhhhhhhhhhHHHHHHHhCCCccHHHHHHHHHHHhhh-ccCChhhhhHHHHHHHhhcccc--CCCceeecCcHHHH
Confidence 00011111111000111122222222221111 1222322222111000011111 11123468999999
Q ss_pred HHHHHHhhhcccccccCCCceecCceeEEEEecCCcE-EEEeCCC-----cEEEeCEEEEeechhhccCCCccccCCCCH
Q 013178 229 VHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKV-TVKTEDG-----SVYQANYAIVSVSIGVLQSDFIEFTPNLPL 302 (448)
Q Consensus 229 ~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v-~V~~~~g-----~~~~ad~VI~a~p~~~l~~~~~~~~p~l~~ 302 (448)
+++|++.+++ .|++|+++++|++|..+++++ .|.+.+| ++++||+||+|+|+..+.+++ ..+.+++
T Consensus 235 ~~aL~~~~~~------~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~~~~~ll--~~~~~~~ 306 (492)
T TIGR02733 235 SDRLVEALKR------DGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQSLLELL--GPLGLPP 306 (492)
T ss_pred HHHHHHHHHh------cCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCHHHHHHhc--CcccCCH
Confidence 9999999977 589999999999999887653 2433333 578999999999999887632 3356777
Q ss_pred HHHHHHhhcCCcc-eeEEEEEcCCCCCCCCC-CcceEEEecccCCccccccc--ccccCCCCcEEEEEecchhh------
Q 013178 303 WKKLAINNFNMAI-YTKIFMKFPYKFWPTGP-GTEFFIYAHERRGYFPIWQH--LENEMPGSNILFVTVTDEES------ 372 (448)
Q Consensus 303 ~~~~~~~~~~~~~-~~~v~l~~~~~~w~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~a------ 372 (448)
...+.++++++.+ ..++++.+++..-+.+. .....++.. +..++..... ....+++..++...+..+..
T Consensus 307 ~~~~~~~~~~~s~~~~~v~l~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~d~~~aP~G~~~l~~~~~~~~~~~~~~~ 385 (492)
T TIGR02733 307 GYRKRLKKLPEPSGAFVFYLGVKRAALPVDCPPHLQFLSDH-QGSLFVSISQEGDGRAPQGEATLIASSFTDTNDWSSLD 385 (492)
T ss_pred HHHHHHhcCCCCCceEEEEEeecccccCCCCCcceeeccCC-CceEEEEeCCccccCCCCCceEEEEEcCCCHHHHcCCC
Confidence 7777788888876 55889999874211110 111112221 1111111111 11234456666544432211
Q ss_pred -hhhhcCChHHHHHHHHHHHHHHHhC
Q 013178 373 -RRVERQSDEKTKAEIMNNVLRKLFG 397 (448)
Q Consensus 373 -~~~~~~~~~e~~~~~~~~~L~~~~g 397 (448)
..|... .+++.+.++ +.|++.++
T Consensus 386 ~~~y~~~-k~~~~~~il-~~le~~~p 409 (492)
T TIGR02733 386 EEDYTAK-KKQYTQTII-ERLGHYFD 409 (492)
T ss_pred HHHHHHH-HHHHHHHHH-HHHHHHCC
Confidence 123222 345778888 99988875
No 25
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=99.94 E-value=1.5e-25 Score=203.12 Aligned_cols=398 Identities=20% Similarity=0.234 Sum_probs=246.4
Q ss_pred CCCCCCcEEEECCChHHHHHHHHHHHcCCC-cEEEEecCCCCCceEEE-ceeCCceeeecceeccCCCCCCCHHHHHHHH
Q 013178 23 TSPPSNSVIIVGAGMSGFMAAKTLEEAGYK-DFIILEASSRVGGRLHK-GNIGGHTIELGANWVNSGGPKSSPSLQIAKK 100 (448)
Q Consensus 23 ~~~~~~dViIIGaGiaGL~aA~~L~~~G~~-~V~vlE~~~~~GGr~~s-~~~~g~~~d~G~~~~~~~~~~~~~~~~l~~~ 100 (448)
......+|+|||||++||++||+|++.+.+ .|+|+|+++|+||.++| ..-.++.+|.|+..+...++....+..++.+
T Consensus 7 ~~~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~ng~ifE~GPrtlrpag~~g~~~l~lv~d 86 (491)
T KOG1276|consen 7 EAVSGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQNGFIFEEGPRTLRPAGPGGAETLDLVSD 86 (491)
T ss_pred cceecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCCCceeeccCCCccCcCCcchhHHHHHHHH
Confidence 345678999999999999999999999884 46779999999999999 4456899999999998854444578999999
Q ss_pred cCCceeecccc-----cccceEEecCCcccc--HHHHHHHHHH----HHH-hHHHHHHHhhh-ccCCCCCCCcccHHHH-
Q 013178 101 IKLKTFYSDYA-----NLTSNIYKQDGGLYQ--KHVVESAVRI----AKT-RDAFCTNLSKM-LSSETTRDDDTSILGS- 166 (448)
Q Consensus 101 lgl~~~~~~~~-----~~~~~~~~~~g~~~~--~~~~~~~~~~----~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~- 166 (448)
+|++......+ ...+.+|. .|++.+ .......... ..- +..+.....+. .... ..+.++..+
T Consensus 87 LGl~~e~~~i~~~~paaknr~l~~-~~~L~~vP~sl~~s~~~~l~p~~k~L~~a~l~e~fr~~~~~~---~~dESV~sF~ 162 (491)
T KOG1276|consen 87 LGLEDELQPIDISHPAAKNRFLYV-PGKLPTVPSSLVGSLKFSLQPFGKPLLEAFLRELFRKKVSDP---SADESVESFA 162 (491)
T ss_pred cCccceeeecCCCChhhhheeecc-CcccccCCcccccccccccCcccchhHHHHHhhhccccCCCC---CccccHHHHH
Confidence 99986654332 11233333 555432 1111101000 000 01111211111 1222 256666665
Q ss_pred -HHhhcCCCCChHHHHHHHHhhccccCCCcccccccccCCCcccc--cCC-----------------------------C
Q 013178 167 -QRLLKEVPMTPLEMAIDYFFNDYEDAEPPRITSLKTTYPRNQLV--DFG-----------------------------E 214 (448)
Q Consensus 167 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~--~~~-----------------------------~ 214 (448)
++|.+ +..+.+++.+.. ..|+.+++.+|+...+...... .+| +
T Consensus 163 ~RrfG~----eV~d~~isp~i~-GiyAgD~~~LSmk~~F~~l~~~Eqk~Gsi~~G~i~~~~~~~~~k~~e~~~~~~~~~e 237 (491)
T KOG1276|consen 163 RRRFGK----EVADRLISPFIR-GIYAGDPSELSMKSSFGKLWKVEQKHGSIILGTIRAKFARKRTKKAETALSAQAKKE 237 (491)
T ss_pred HHhhhH----HHHHHHHHHHhC-ccccCChHHhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhcCCCccchhhhhhccc
Confidence 33333 222333333322 2378888888887665442110 011 1
Q ss_pred CeeeeeCCCchHHHHHHHHHhhhcccccccCCCceecCceeEEEEecC-CcEE--EEeCCC-cEEEeCEEEEeechhhcc
Q 013178 215 DSYFVADPRGFESVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSK-DKVT--VKTEDG-SVYQANYAIVSVSIGVLQ 290 (448)
Q Consensus 215 ~~~~~~~~~G~~~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~-~~v~--V~~~~g-~~~~ad~VI~a~p~~~l~ 290 (448)
...+...++|++.+++++.+.|.. ..+.|.++-++..+.... +++. +...++ .....+++..|+|...+.
T Consensus 238 ~~~~~sl~gGle~lP~a~~~~L~~------~~v~i~~~~~~~~~sk~~~~~~~~tl~~~~~~~~~~~~~~~~t~~~~k~a 311 (491)
T KOG1276|consen 238 KWTMFSLKGGLETLPKALRKSLGE------REVSISLGLKLSGNSKSRSGNWSLTLVDHSGTQRVVVSYDAATLPAVKLA 311 (491)
T ss_pred ccchhhhhhhHhHhHHHHHHHhcc------cchhhhcccccccccccccCCceeEeEcCCCceeeeccccccccchHHhh
Confidence 223344578999999999999865 457889999998887653 3354 445555 346677777899999887
Q ss_pred CCCccccCCCCHHHHHHHhhcCCcceeEEEEEcCCCC-CCCCCCcceEEEeccc---CCccccccc--ccccCCCCcEEE
Q 013178 291 SDFIEFTPNLPLWKKLAINNFNMAIYTKIFMKFPYKF-WPTGPGTEFFIYAHER---RGYFPIWQH--LENEMPGSNILF 364 (448)
Q Consensus 291 ~~~~~~~p~l~~~~~~~~~~~~~~~~~~v~l~~~~~~-w~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~l~ 364 (448)
.++ +.+.+....++.+++|.++..|.+.|+++- -.+-.+.+.++..... ..+..+|.+ ++...+.+ .++
T Consensus 312 ~ll----~~~~~sls~~L~ei~y~~V~vVn~~yp~~~~~~pl~GFG~LvPs~~~~~~~~LG~ifdS~~Fp~~~~s~-~vt 386 (491)
T KOG1276|consen 312 KLL----RGLQNSLSNALSEIPYVPVAVVNTYYPKEKIDLPLQGFGLLVPSEPKNGFKTLGTIFDSMLFPDRSPSP-KVT 386 (491)
T ss_pred hhc----cccchhhhhhhhcCCCCceEEEEEeccCcccccccccceeeccCCCCCCCceeEEEeecccCCCCCCCc-eEE
Confidence 643 666677788899999999999999999742 1111133344432111 112223332 11222222 444
Q ss_pred EEecchhhh--hhhcCChHHHHHHHHHHHHHHHhCCCCCCCceEeeccCCCCCCCCcccCCCCCCCCHHH---HHHHhcc
Q 013178 365 VTVTDEESR--RVERQSDEKTKAEIMNNVLRKLFGNKIPEPQSIFVPRWWSNRFFNGSYSNWPNGFTQQS---YKELKVS 439 (448)
Q Consensus 365 ~~~~~~~a~--~~~~~~~~e~~~~~~~~~L~~~~g~~~~~~~~~~~~~W~~~~~~~g~~~~~~~g~~~~~---~~~~~~p 439 (448)
+++.+...+ .....++||+++.+. ++|+++++... .|....++-|. .|++++.+|+++.. ..-+.+-
T Consensus 387 vm~gg~~~~n~~~~~~S~ee~~~~v~-~alq~~Lgi~~-~P~~~~v~l~~------~ciPqy~vGh~~~le~a~~~l~~~ 458 (491)
T KOG1276|consen 387 VMMGGGGSTNTSLAVPSPEELVNAVT-SALQKMLGISN-KPVSVNVHLWK------NCIPQYTVGHDDVLEAAKSMLTDS 458 (491)
T ss_pred EEecccccccCcCCCCCHHHHHHHHH-HHHHHHhCCCC-Ccccccceehh------hcccceecchHHHHHHHHHHHHhC
Confidence 444333322 234569999999999 99999997532 46666777888 79999999987653 1122222
Q ss_pred -cCceEEccC
Q 013178 440 -ICKLHVGLT 448 (448)
Q Consensus 440 -~~~i~fAG~ 448 (448)
-.+++++|.
T Consensus 459 ~g~~l~l~G~ 468 (491)
T KOG1276|consen 459 PGLGLFLGGN 468 (491)
T ss_pred CCCceEeecc
Confidence 258888874
No 26
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.94 E-value=4.9e-26 Score=194.20 Aligned_cols=278 Identities=21% Similarity=0.333 Sum_probs=196.5
Q ss_pred CcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEEceeCCceeeecceeccCCCCCCCHHHHHHHHcCCceee
Q 013178 28 NSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNIGGHTIELGANWVNSGGPKSSPSLQIAKKIKLKTFY 107 (448)
Q Consensus 28 ~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~l~~~lgl~~~~ 107 (448)
.+|+|||+||+||+||+.|+.+|+ +|+||||+.-+|||..|.+..+..+|.|+++|.. .+..+.++.+.+.-..-.
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~-~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~---~~~~F~~~Ve~~~~~glV 77 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGR-EVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKP---RDELFLRAVEALRDDGLV 77 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCc-EEEEEEcCCCcccchheeccCCccccccceeecC---CchHHHHHHHHHHhCCce
Confidence 479999999999999999999999 8999999999999999999999999999999988 777777766654322111
Q ss_pred cccccccceEEecCCccccHHHHHHHHHHHHHhHHHHHHHhhhccCCCCCCCcccHHHHHHhhcCCCCChHHHHHHHHhh
Q 013178 108 SDYANLTSNIYKQDGGLYQKHVVESAVRIAKTRDAFCTNLSKMLSSETTRDDDTSILGSQRLLKEVPMTPLEMAIDYFFN 187 (448)
Q Consensus 108 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (448)
.... ..+|...|.-.+ ...
T Consensus 78 ~~W~---~~~~~~~~~~~~--------------------------~~~-------------------------------- 96 (331)
T COG3380 78 DVWT---PAVWTFTGDGSP--------------------------PRG-------------------------------- 96 (331)
T ss_pred eecc---ccccccccCCCC--------------------------CCC--------------------------------
Confidence 1000 001110000000 000
Q ss_pred ccccCCCcccccccccCCCcccccCCCCeeeeeCCCchHHHHHHHHHhhhcccccccCCCceecCceeEEEEecCCcEEE
Q 013178 188 DYEDAEPPRITSLKTTYPRNQLVDFGEDSYFVADPRGFESVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVTV 267 (448)
Q Consensus 188 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V 267 (448)
.... +..+-||+.|.+.|+..+ +|.++++|++|.+.++.+++
T Consensus 97 -------------------------d~~p--yvg~pgmsalak~LAtdL-----------~V~~~~rVt~v~~~~~~W~l 138 (331)
T COG3380 97 -------------------------DEDP--YVGEPGMSALAKFLATDL-----------TVVLETRVTEVARTDNDWTL 138 (331)
T ss_pred -------------------------CCCc--cccCcchHHHHHHHhccc-----------hhhhhhhhhhheecCCeeEE
Confidence 0000 112568999888877765 79999999999999989999
Q ss_pred EeCCC-cEEEeCEEEEeechhhccCCCccccCCCCHHHHHHHhhcCCcceeEEEEEcCCCCCCCCCCcceEEEecccCCc
Q 013178 268 KTEDG-SVYQANYAIVSVSIGVLQSDFIEFTPNLPLWKKLAINNFNMAIYTKIFMKFPYKFWPTGPGTEFFIYAHERRGY 346 (448)
Q Consensus 268 ~~~~g-~~~~ad~VI~a~p~~~l~~~~~~~~p~l~~~~~~~~~~~~~~~~~~v~l~~~~~~w~~~~~~~~~~~~~~~~~~ 346 (448)
.+++| ....+|.||+|+|.+.+..++......+|.+.+.++..+.|.+...+.+.|+.+.-...++ .++.++ ....
T Consensus 139 ~~~~g~~~~~~d~vvla~PAPQ~~~LLt~~~~~~p~~l~~~~a~V~y~Pc~s~~lg~~q~l~~P~~G--~~vdg~-~laW 215 (331)
T COG3380 139 HTDDGTRHTQFDDVVLAIPAPQTATLLTTDADDLPAALRAALADVVYAPCWSAVLGYPQPLDRPWPG--NFVDGH-PLAW 215 (331)
T ss_pred EecCCCcccccceEEEecCCCcchhhcCcccccchHHHHHhhccceehhHHHHHhcCCccCCCCCCC--cccCCC-eeee
Confidence 99766 5789999999999988776443223468888999999999999999999998654333111 222111 0011
Q ss_pred ccccccccccCCCCcEEEEEecchhhhhhhcCChHHHHHHHHHHHHHHHhCCCCCCCceEeeccCC
Q 013178 347 FPIWQHLENEMPGSNILFVTVTDEESRRVERQSDEKTKAEIMNNVLRKLFGNKIPEPQSIFVPRWW 412 (448)
Q Consensus 347 ~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~e~~~~~~~~~L~~~~g~~~~~~~~~~~~~W~ 412 (448)
..+-.+..+..+.+.+++.-...++++...+.++|+.++... .....+++...++|.-...++|.
T Consensus 216 la~d~sK~g~~p~~~~~vvqasp~wSr~h~~~~~e~~i~~l~-aA~~~~~~~~~~~p~~s~~H~Wr 280 (331)
T COG3380 216 LARDASKKGHVPDGEIWVVQASPDWSREHLDHPAEQVIVALR-AAAQELDGDRLPEPDWSDAHRWR 280 (331)
T ss_pred eeccccCCCCCCcCceEEEEeCchHHHHhhcCCHHHHHHHHH-HhhhhccCCCCCcchHHHhhccc
Confidence 111112223445555777777778888888899999888877 88888888777778777889996
No 27
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.92 E-value=7.7e-23 Score=204.43 Aligned_cols=274 Identities=14% Similarity=0.112 Sum_probs=156.9
Q ss_pred EEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEEceeCCceeeecceeccCCCCCCCHHHHHHHHcCCce--ee
Q 013178 30 VIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNIGGHTIELGANWVNSGGPKSSPSLQIAKKIKLKT--FY 107 (448)
Q Consensus 30 ViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~l~~~lgl~~--~~ 107 (448)
|||||||++||+||..|+++|+ +|+||||++++||+++|++.+|+.+|.|++++.. ...+.++++++|++. ..
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~-~V~VlE~~~~~GG~~~t~~~~G~~fD~G~~~~~~----~~~~~~l~~~lg~~l~~~l 75 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGI-PVTVVEQRDKPGGRAGVLEDDGFRFDTGPTVITM----PEALEELFALAGRDLADYV 75 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCC-cEEEEECCCCCcCceEEEecCCeEEecCCeEEcc----ccHHHHHHHHcCCChhheE
Confidence 6999999999999999999999 8999999999999999999999999999999865 256778888888532 11
Q ss_pred --cccccccceEEecCCccccH----HHHHH-HHH-------HHHHhHHHHHHHhh-----hccCCCCCCCcccHHHH--
Q 013178 108 --SDYANLTSNIYKQDGGLYQK----HVVES-AVR-------IAKTRDAFCTNLSK-----MLSSETTRDDDTSILGS-- 166 (448)
Q Consensus 108 --~~~~~~~~~~~~~~g~~~~~----~~~~~-~~~-------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-- 166 (448)
...+.. ..++..+|+.+.. ..... +.. .+..+.+..+.... .+.... . ........
T Consensus 76 ~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~ 152 (502)
T TIGR02734 76 ELVPLDPF-YRLCWEDGSQLDVDNDQEELEAQIARFNPGDVAGYRRFLDYAERVYREGYRKLGYVPF-L-SPRDLLRADL 152 (502)
T ss_pred EEEECCCc-eEEECCCCCEEEecCCHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHhhCCC-C-CHHHHHhHhh
Confidence 111111 1233334543331 11110 000 11111111111111 000000 0 00000000
Q ss_pred -HHhhcCCCCChH---------HHHHHHHhhc-cccCCCccccccc-ccCCCcccccCCCCeeeeeCCCchHHHHHHHHH
Q 013178 167 -QRLLKEVPMTPL---------EMAIDYFFND-YEDAEPPRITSLK-TTYPRNQLVDFGEDSYFVADPRGFESVVHSVAK 234 (448)
Q Consensus 167 -~~~~~~~~~~~~---------~~~~~~~~~~-~~~~~~~~~~s~~-~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~ 234 (448)
..+......... +.+...+... ..++.++...+.. .++ .+..+. .....+.+|++.++++|++
T Consensus 153 ~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~g~~p~~~~~~~~l~---~~~~~~--~g~~~~~gG~~~l~~al~~ 227 (502)
T TIGR02734 153 PQLLALLAWRSLYSKVARFFSDERLRQAFSFHALFLGGNPFRTPSIYALI---SALERE--WGVWFPRGGTGALVAAMAK 227 (502)
T ss_pred HhhhhccCcCCHHHHHHhhcCCHHHHHHhcccceeeccCcccchHHHHHH---HHHHhh--ceEEEcCCCHHHHHHHHHH
Confidence 000000001110 1111111111 1233444333321 111 111111 1223468999999999999
Q ss_pred hhhcccccccCCCceecCceeEEEEecCCc-EEEEeCCCcEEEeCEEEEeechhhccCCCccccCC-CCHHHHHHHhhcC
Q 013178 235 QFLSHRHQVIRDPRLKLNKVVRNISYSKDK-VTVKTEDGSVYQANYAIVSVSIGVLQSDFIEFTPN-LPLWKKLAINNFN 312 (448)
Q Consensus 235 ~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~-v~V~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~p~-l~~~~~~~~~~~~ 312 (448)
.+++ .|++|+++++|++|..++++ +.|.+.+|++++||+||+|+++..+...++ .+. .++...+.+++++
T Consensus 228 ~~~~------~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~--~~~~~~~~~~~~~~~~~ 299 (502)
T TIGR02734 228 LAED------LGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLHHTYRRLL--PNHPRRRYPAARLSRKR 299 (502)
T ss_pred HHHH------CCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHHHHHHHhc--CccccccccccccccCC
Confidence 9877 69999999999999988776 568888888899999999999865543222 222 2323344556666
Q ss_pred C-cceeEEEEEcC
Q 013178 313 M-AIYTKIFMKFP 324 (448)
Q Consensus 313 ~-~~~~~v~l~~~ 324 (448)
+ .+..++++.++
T Consensus 300 ~s~s~~~~~lgl~ 312 (502)
T TIGR02734 300 PSPSLFVLYFGLL 312 (502)
T ss_pred cCCeeeEEEEeec
Confidence 5 46788899988
No 28
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.92 E-value=3.7e-22 Score=198.55 Aligned_cols=283 Identities=15% Similarity=0.115 Sum_probs=155.8
Q ss_pred CcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEEceeCCceeeecceeccCCCC--CCCHHHHHHHHcCCce
Q 013178 28 NSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNIGGHTIELGANWVNSGGP--KSSPSLQIAKKIKLKT 105 (448)
Q Consensus 28 ~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~~~--~~~~~~~l~~~lgl~~ 105 (448)
+||+|||||++||+||..|+++|+ +|+||||++.+||++.+++.+|+.+|.|++++...+. ..+.+.+.+..+|...
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~-~V~vlE~~~~~GG~~~~~~~~G~~fd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGA-KVLVLERYLIPGGSAGYFEREGYRFDVGASMIFGFGDKGTTNLLTRALAAVGRKL 79 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCC-cEEEEECCCCCCCceeEeccCCEEEEecchhheecCCcccccHHHHHHHHcCCcc
Confidence 699999999999999999999999 7999999999999999999999999999999875311 2234556677666432
Q ss_pred eecccccccceEEecCCcccc----HHHH-HHHHH-------HHHHhHHHHHHHhhhcc---CCCCCCCcccHH------
Q 013178 106 FYSDYANLTSNIYKQDGGLYQ----KHVV-ESAVR-------IAKTRDAFCTNLSKMLS---SETTRDDDTSIL------ 164 (448)
Q Consensus 106 ~~~~~~~~~~~~~~~~g~~~~----~~~~-~~~~~-------~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~------ 164 (448)
....... .......+|..+. .... ..+.. .+..+.+........+. ... ......+.
T Consensus 80 ~~~~~~~-~~~~~~~~g~~~~~~~d~~~~~~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 157 (493)
T TIGR02730 80 ETIPDPV-QIHYHLPNGLNVKVHREYDDFIQELVAKFPHEKEGIRRFYDECWQVFNCLNSMELLS-LEEPRYLFRVFFKH 157 (493)
T ss_pred cccCCCc-cEEEECCCCeeEeeecCHHHHHHHHHHHCchhHHHHHHHHHHHHHHHHHHHhhhhcc-ccChHHHHHHHhhc
Confidence 2211111 1112222342221 1101 11100 11111111111111000 000 00000000
Q ss_pred -----HH-----H----HhhcCCCCChHHHHHHHHhhccccCCC-cccccc-cccCCCcccccCCCCeeeeeCCCchHHH
Q 013178 165 -----GS-----Q----RLLKEVPMTPLEMAIDYFFNDYEDAEP-PRITSL-KTTYPRNQLVDFGEDSYFVADPRGFESV 228 (448)
Q Consensus 165 -----~~-----~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~-~~~~~~~~~~~~~~~~~~~~~~~G~~~l 228 (448)
.. . .+.+++....+..++.... ..++.. ....+. ..... +.... ......+.+|++.+
T Consensus 158 ~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~--~~~~~~p~~~~p~~~~~~~---~~~~~-~~g~~~~~gG~~~l 231 (493)
T TIGR02730 158 PLACLGLAKYLPQNAGDIARRYIRDPGLLKFIDIEC--FCWSVVPADQTPMINAGMV---FSDRH-YGGINYPKGGVGQI 231 (493)
T ss_pred hhhhhHHHHHhhccHHHHHHHhcCCHHHHHHHHHHH--HhccCCCcccchhhhHHHh---hcccc-cceEecCCChHHHH
Confidence 00 0 0001111111222221111 112221 122211 11110 11111 11234568999999
Q ss_pred HHHHHHhhhcccccccCCCceecCceeEEEEecCCcE-EEEeCCCcEEEeCEEEEeechh-hccCCCccccCCCCHHHHH
Q 013178 229 VHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKV-TVKTEDGSVYQANYAIVSVSIG-VLQSDFIEFTPNLPLWKKL 306 (448)
Q Consensus 229 ~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v-~V~~~~g~~~~ad~VI~a~p~~-~l~~~~~~~~p~l~~~~~~ 306 (448)
+++|.+.+++ .|++|+++++|++|..+++++ .|.+.+|+++++|+||+|+.+. .+.++ +. ...+++....
T Consensus 232 ~~~L~~~~~~------~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~L-l~-~~~~~~~~~~ 303 (493)
T TIGR02730 232 AESLVKGLEK------HGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRWDTFGKL-LK-AENLPKKEKN 303 (493)
T ss_pred HHHHHHHHHH------CCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChHHHHHHh-CC-ccccchhhHH
Confidence 9999999987 699999999999999877664 5888888889999999988654 44332 11 1234444344
Q ss_pred HHhhcCCc-ceeEEEEEcCCCC
Q 013178 307 AINNFNMA-IYTKIFMKFPYKF 327 (448)
Q Consensus 307 ~~~~~~~~-~~~~v~l~~~~~~ 327 (448)
.++++++. +..++++.++...
T Consensus 304 ~~~~~~~s~s~~~~~l~l~~~~ 325 (493)
T TIGR02730 304 WQRNYVKSPSFLSLHLGVKADV 325 (493)
T ss_pred HHhhccCCCceEEEEEEecCcc
Confidence 45666654 5889999998754
No 29
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=99.90 E-value=2e-22 Score=177.96 Aligned_cols=277 Identities=15% Similarity=0.118 Sum_probs=176.8
Q ss_pred CCCCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEEce----eCCceeeecceeccCCCCCCCHHHHH
Q 013178 22 PTSPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGN----IGGHTIELGANWVNSGGPKSSPSLQI 97 (448)
Q Consensus 22 ~~~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~~----~~g~~~d~G~~~~~~~~~~~~~~~~l 97 (448)
+...+..+|+|||+|+|||+|||.|++.. +|+|||+++++||++.|.. .+|..+|.|...++. ..++++..|
T Consensus 3 ~~~~~r~~IAVIGsGisGLSAA~~Ls~rh--dVTLfEA~~rlGGha~Tv~~~~d~~g~~vDtGfiVyn~--~tYpnl~~L 78 (447)
T COG2907 3 NQPHPRRKIAVIGSGISGLSAAWLLSRRH--DVTLFEADRRLGGHANTVAGNTDGGGVFVDTGFIVYNE--RTYPNLTRL 78 (447)
T ss_pred CCCCCCcceEEEcccchhhhhHHhhhccc--ceEEEeccccccCccceeeccccCCceeecceeEEecC--CCcchHHHH
Confidence 45567899999999999999999999875 6999999999999999984 346789999999988 689999999
Q ss_pred HHHcCCceeecccccccceEEecCCccccH------------HH-HHHHHHHHHHhHHHHHHHhhhccCCCCCCCcccHH
Q 013178 98 AKKIKLKTFYSDYANLTSNIYKQDGGLYQK------------HV-VESAVRIAKTRDAFCTNLSKMLSSETTRDDDTSIL 164 (448)
Q Consensus 98 ~~~lgl~~~~~~~~~~~~~~~~~~g~~~~~------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (448)
++++|++......+.. ..++..|-.+.. +. -..++..+.++..+....... .......+.++.
T Consensus 79 f~~iGv~t~as~Msf~--v~~d~gglEy~g~tgl~~L~aqk~n~l~pRf~~mlaeiLrf~r~~~~~--~d~~~~~~~tl~ 154 (447)
T COG2907 79 FKTIGVDTKASFMSFS--VSLDMGGLEYSGLTGLAGLLAQKRNLLRPRFPCMLAEILRFYRSDLAP--SDNAGQGDTTLA 154 (447)
T ss_pred HHHcCCCCcccceeEE--EEecCCceeeccCCCccchhhccccccchhHHHHHHHHHHHhhhhccc--hhhhcCCCccHH
Confidence 9999999765433211 011111111110 00 112333333333333321111 111122455555
Q ss_pred HHHHhhcC---CCCChHHHHHHHHhhccccCCCccccccc------ccCCCcccccCCCCeeeeeCCCchHHHHHHHHHh
Q 013178 165 GSQRLLKE---VPMTPLEMAIDYFFNDYEDAEPPRITSLK------TTYPRNQLVDFGEDSYFVADPRGFESVVHSVAKQ 235 (448)
Q Consensus 165 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~s~~------~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~ 235 (448)
++..-.++ +.+.....+..-+ +..+..+.+.+ .+..+.......+...+.+..||....+++|+..
T Consensus 155 ~~L~~~~f~~af~e~~l~P~~aai-----wstp~~d~~~~pa~~~~~f~~nhGll~l~~rp~wrtV~ggS~~yvq~laa~ 229 (447)
T COG2907 155 QYLKQRNFGRAFVEDFLQPLVAAI-----WSTPLADASRYPACNFLVFTDNHGLLYLPKRPTWRTVAGGSRAYVQRLAAD 229 (447)
T ss_pred HHHHhcCccHHHHHHhHHHHHHHH-----hcCcHhhhhhhhHHHHHHHHhccCceecCCCCceeEcccchHHHHHHHhcc
Confidence 54333222 1111111111111 11222222211 1111122222334555567789999999999999
Q ss_pred hhcccccccCCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeechhhccCCCccccCCCCHHHHHHHhhcCCcc
Q 013178 236 FLSHRHQVIRDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSIGVLQSDFIEFTPNLPLWKKLAINNFNMAI 315 (448)
Q Consensus 236 l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~p~l~~~~~~~~~~~~~~~ 315 (448)
+ +.+|.++++|.+|.+-.++|.|+..+|++-++|+||+|+.+.....++ +.-+++.++.+..+.|..
T Consensus 230 ~---------~~~i~t~~~V~~l~rlPdGv~l~~~~G~s~rFD~vViAth~dqAl~mL----~e~sp~e~qll~a~~Ys~ 296 (447)
T COG2907 230 I---------RGRIETRTPVCRLRRLPDGVVLVNADGESRRFDAVVIATHPDQALALL----DEPSPEERQLLGALRYSA 296 (447)
T ss_pred c---------cceeecCCceeeeeeCCCceEEecCCCCccccceeeeecChHHHHHhc----CCCCHHHHHHHHhhhhhh
Confidence 6 568999999999999999999999999999999999999988665433 333555567999999998
Q ss_pred eeEEEEEcC
Q 013178 316 YTKIFMKFP 324 (448)
Q Consensus 316 ~~~v~l~~~ 324 (448)
...|.....
T Consensus 297 n~aVlhtd~ 305 (447)
T COG2907 297 NTAVLHTDA 305 (447)
T ss_pred ceeEEeecc
Confidence 777766654
No 30
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.87 E-value=1e-20 Score=186.67 Aligned_cols=246 Identities=20% Similarity=0.255 Sum_probs=141.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEEceeCCceeeecceeccCCCCCCCHHHHHHHHcC-Cc
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNIGGHTIELGANWVNSGGPKSSPSLQIAKKIK-LK 104 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~l~~~lg-l~ 104 (448)
+.+||||||||++||+||..|+++|+ +|+||||++++||++++.+.+|+.+|+|++++..+ . ...++++++ +.
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G~-~V~VlE~~~~~GG~a~t~e~~Gf~fd~G~~~~~~~--~---~~~~~~~l~~l~ 75 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAGL-KVTVLEKNDRVGGRARTFELDGFRFDTGPSWYLMP--D---PGPLFRELGNLD 75 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhCCC-EEEEEEecCCCCcceEEEeccceEeccCcceeecC--c---hHHHHHHhccCc
Confidence 57899999999999999999999999 89999999999999999999999999999888761 2 225555555 44
Q ss_pred eeec-ccc-cccceEEecCCcccc----HHHHHH------------HHHHHHHhHHHHHHHhhhccCCCCC--C-CcccH
Q 013178 105 TFYS-DYA-NLTSNIYKQDGGLYQ----KHVVES------------AVRIAKTRDAFCTNLSKMLSSETTR--D-DDTSI 163 (448)
Q Consensus 105 ~~~~-~~~-~~~~~~~~~~g~~~~----~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~ 163 (448)
.... ... ......+..+|..+. ...... +........+..+...+.+...... . .....
T Consensus 76 ~~~l~~~~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (487)
T COG1233 76 ADGLDLLPPDPAYRVFLPDGDAIDVYTDLEATAELLESLEPGDGEALARYLRLLARLYELLAALLLAPPRSELLLVPDTP 155 (487)
T ss_pred ccceeeeccCCceeeecCCCCEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHhhHHHHhhcCCCchhhhhhccccH
Confidence 3321 111 122233343444332 111110 1111111111111122211111100 0 00111
Q ss_pred HHHHHhhcCC------------CCChHHHHHHHHhhccccC-CCcccccccccCCCcccccCCCCeeeeeCCCchHHHHH
Q 013178 164 LGSQRLLKEV------------PMTPLEMAIDYFFNDYEDA-EPPRITSLKTTYPRNQLVDFGEDSYFVADPRGFESVVH 230 (448)
Q Consensus 164 ~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~ 230 (448)
.....+.... .....+..+.+. ..++ .++...+ .+........+.. ....++||++.|++
T Consensus 156 ~~~l~~~~~~~~~~~~~~~~~f~~~~~r~~~~~~---~~~~~~~p~~~~--a~~~~~~~~~~~~--G~~~p~GG~~al~~ 228 (487)
T COG1233 156 ERLLRLLGFSLTSALDFFRGRFGSELLRALLAYS---AVYGGAPPSTPP--ALYLLLSHLGLSG--GVFYPRGGMGALVD 228 (487)
T ss_pred HHHHHHHHHhhhhHHHHHHHHhcCHHHHHHHHHH---HHhcCCCCCchh--HHHHHHHHhcccC--CeeeeeCCHHHHHH
Confidence 1111111111 111111111111 1111 2222222 1111111222222 23345799999999
Q ss_pred HHHHhhhcccccccCCCceecCceeEEEEecCCc-EEEEeCCCcEEEeCEEEEeechhhcc
Q 013178 231 SVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDK-VTVKTEDGSVYQANYAIVSVSIGVLQ 290 (448)
Q Consensus 231 ~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~-v~V~~~~g~~~~ad~VI~a~p~~~l~ 290 (448)
+|++.+++ .|++|+++++|++|..++++ +.+.+.+|+.+++|.||+++.+....
T Consensus 229 aL~~~~~~------~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv~~~~~~~~~ 283 (487)
T COG1233 229 ALAELARE------HGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADPALLA 283 (487)
T ss_pred HHHHHHHH------cCCEEECCCceEEEEEeCCcceEEeccccceeccceeEecCchhhhh
Confidence 99999988 69999999999999998875 78888888789999999999874443
No 31
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=4.6e-19 Score=167.43 Aligned_cols=392 Identities=15% Similarity=0.084 Sum_probs=199.9
Q ss_pred CcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEEcee-CCceeeecceeccCCCCCCCHHHHHHHHcCCcee
Q 013178 28 NSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNI-GGHTIELGANWVNSGGPKSSPSLQIAKKIKLKTF 106 (448)
Q Consensus 28 ~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~~~-~g~~~d~G~~~~~~~~~~~~~~~~l~~~lgl~~~ 106 (448)
++|+|+|||+|||+||++|+++|+ +|+|+|+++++||.+.|++. +|.+.|+|-|.|++ .+.+++.++++++.+..
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~-~vt~~ea~~~~GGk~~s~~~~dg~~~E~glh~f~~---~Y~n~~~ll~~~~~~~~ 76 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGY-DVTLYEARDRLGGKVASWRDSDGNHVEHGLHVFFG---CYYNLLTLLKELPIEDR 76 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCC-ceEEEeccCccCceeeeeecCCCCeeeeeeEEech---hHHHHHHHhhhCCchhe
Confidence 479999999999999999999999 89999999999999999886 68999999999999 89999999999998865
Q ss_pred ecccccccceEEe----cCCc---------cccHHHHHHHHHHHHH-hHHHHHHHhhhccCCC-------CCCCcccHHH
Q 013178 107 YSDYANLTSNIYK----QDGG---------LYQKHVVESAVRIAKT-RDAFCTNLSKMLSSET-------TRDDDTSILG 165 (448)
Q Consensus 107 ~~~~~~~~~~~~~----~~g~---------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 165 (448)
........ +|. ..|. ..+.......+..-.. ..+.. .+.-.+.... ...+++++.+
T Consensus 77 ~~~~~~~~--~~~~~~~~~g~~~~~~~~~~p~p~~~~~~~l~~~~~~~~~~~-~~~~~l~~~~~g~~~~~~eld~~s~~d 153 (485)
T COG3349 77 LQLREHTK--TFVGSGTRPGAIGRFARPDAPQPTNGLKAFLRLPQLPRREKI-RFVLRLGDAPIGADRSLRELDKISFAD 153 (485)
T ss_pred eehHhhhh--hhcccCCCCCcccccccCCCCCcchhhhhhhhccccCHHHHh-HHhhccccccchhHHHHHHHhcccHHH
Confidence 54332211 110 0110 0111111111000000 00000 0000000000 0112333333
Q ss_pred HHHhhcCCCCChHHHHHHHHhhccccCCCcccccccccCCCcc---cccCCCCeeeeeCCCch-HHHHHHHHHhhhcccc
Q 013178 166 SQRLLKEVPMTPLEMAIDYFFNDYEDAEPPRITSLKTTYPRNQ---LVDFGEDSYFVADPRGF-ESVVHSVAKQFLSHRH 241 (448)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~---~~~~~~~~~~~~~~~G~-~~l~~~l~~~l~~~~~ 241 (448)
+.....--. ......+..+.....| .+++..|.......+. ....+. ......+++. ..+...+.+.+.+
T Consensus 154 ~l~~~g~~~-~~~k~~~~~~~~~l~f-~~~e~~sa~~~lt~~~~~~~~~~~~-~i~~~~~g~~~E~~~~p~~~yi~~--- 227 (485)
T COG3349 154 WLKEKGARE-GAYKAAFAPIALALTF-IDPEGCSARFFLTILNLFLIVTLEA-SILRNLRGSPDEVLLQPWTEYIPE--- 227 (485)
T ss_pred HHHHhCCCc-hhHHHHHHHHHHhhcc-cCcccCcchhHHHHHHHHHHhccCc-chhhhhcCCCcceeeehhhhhccc---
Confidence 322211111 1111122211111111 1222333321111111 111010 0111112332 2345556666655
Q ss_pred cccCCCceecCceeEEEEecCCc-----EEEEeCCCcE---EEeCEEEEeechhhccCCCccccCCCCHHHHHHHhhcCC
Q 013178 242 QVIRDPRLKLNKVVRNISYSKDK-----VTVKTEDGSV---YQANYAIVSVSIGVLQSDFIEFTPNLPLWKKLAINNFNM 313 (448)
Q Consensus 242 ~~~~g~~i~~~~~V~~I~~~~~~-----v~V~~~~g~~---~~ad~VI~a~p~~~l~~~~~~~~p~l~~~~~~~~~~~~~ 313 (448)
.|.+++.+.+|+.|.....+ ..+... +.. ..++.++.+.....+++.... +.-+.+....+..+..
T Consensus 228 ---~G~~v~~~~pv~~l~l~~~~~~~~~~g~~~~-~~~~e~~~~~~~~~~~~v~~~~~~~ps--~W~~~~~f~~ly~l~~ 301 (485)
T COG3349 228 ---RGRKVHADYPVKELDLDGARGLAKVTGGDVT-GPEQEQQAALAVVDAFAVQRFKRDLPS--EWPKWSNFDGLYGLRL 301 (485)
T ss_pred ---cCceeeccceeeeeeccccccccceEeeeec-CcceEeeehhhhhcccccchHhhcCcc--cccccccccccccccc
Confidence 59999999999999876521 233333 433 344555555555555542211 1111223344566778
Q ss_pred cceeEEEEEcCCCCCCCCC-CcceEEEe--ccc-CCcccccccccc----cCCCC-cEEEEEecchhhhhhhcCChHHHH
Q 013178 314 AIYTKIFMKFPYKFWPTGP-GTEFFIYA--HER-RGYFPIWQHLEN----EMPGS-NILFVTVTDEESRRVERQSDEKTK 384 (448)
Q Consensus 314 ~~~~~v~l~~~~~~w~~~~-~~~~~~~~--~~~-~~~~~~~~~~~~----~~~~~-~~l~~~~~~~~a~~~~~~~~~e~~ 384 (448)
.++.++++.|+...|.... ...+++.- ..+ ....++|..... ..++. ..+..... ....|...+++++.
T Consensus 302 ~p~~~~~l~~~~~~~~~~~~~~~~~~dn~~~s~~~l~~~~ad~~~~~~~y~e~g~~~~le~~~~--~~~~~~~~~~~~~~ 379 (485)
T COG3349 302 VPVITLHLRFDGWVTELTDRNQQFGIDNLLWSDDTLGGVVADLALTSPDYVEPGAGCYLEKVLA--PGWPFLFESDEAIV 379 (485)
T ss_pred cceeEEEEeecCccccccccchhhhhhccccccccCCceeeeccccchhhccccchhhhhhhhc--ccccccccchhhHH
Confidence 8999999999975444311 11111110 111 122223322111 01111 12222222 12356677899999
Q ss_pred HHHHHHHHHHHhCCCCCCCceEeeccCCCCCCCCcccCCCCCCCCHHHHHHHhcccCceEEccC
Q 013178 385 AEIMNNVLRKLFGNKIPEPQSIFVPRWWSNRFFNGSYSNWPNGFTQQSYKELKVSICKLHVGLT 448 (448)
Q Consensus 385 ~~~~~~~L~~~~g~~~~~~~~~~~~~W~~~~~~~g~~~~~~~g~~~~~~~~~~~p~~~i~fAG~ 448 (448)
..+. +.+...++...... -|.+.--..-+....+||.. .++|...+|..|+++||.
T Consensus 380 a~~e-~~~~~~vP~~~~a~------~~~~~i~~~q~~~~~~pgs~-~~rP~~~Tpv~N~~laGd 435 (485)
T COG3349 380 ATFE-KELYELVPSLAEAK------LKSSVLVNQQSLYGLAPGSY-HYRPEQKTPIPNLLLAGD 435 (485)
T ss_pred HHHH-HHhhhcCCchhccc------ccccceeccccccccCCCcc-ccCCCCCCCccchhhccc
Confidence 9999 99997775432222 12222222234445668875 458888999999999985
No 32
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=99.74 E-value=4.1e-17 Score=157.37 Aligned_cols=248 Identities=14% Similarity=0.201 Sum_probs=141.2
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEEceeC--------------------Cceeeeccee
Q 013178 24 SPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNIG--------------------GHTIELGANW 83 (448)
Q Consensus 24 ~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~~~~--------------------g~~~d~G~~~ 83 (448)
|+..+||||||+|++|+.+|..|+++|+ +|+++|+++..||+.+|.+.. .+.+|+.+++
T Consensus 1 m~~~~DViViGtGL~e~ilAa~Ls~~Gk-kVLhlD~n~~yGG~~as~~l~~l~~~f~~~~~~~~~~~~~r~~~iDL~Pk~ 79 (443)
T PTZ00363 1 MDETYDVIVCGTGLKECILSGLLSVNGK-KVLHMDRNPYYGGESASLNLTQLYKKFKPGETPPESLGRNRDWNVDLIPKF 79 (443)
T ss_pred CCCcceEEEECCChHHHHHHhhhhhCCC-EEEEecCCCCcCcccccccHHHHHHhhcccCCCchhcccccccccccCCee
Confidence 4568999999999999999999999999 799999999999999987432 2334556666
Q ss_pred ccCCCCCCCHHHHHHHHcCCceeecccccccceEEecCCcccc--HHHHHHH----HHHH--HHhHHHHHHHhhhccCCC
Q 013178 84 VNSGGPKSSPSLQIAKKIKLKTFYSDYANLTSNIYKQDGGLYQ--KHVVESA----VRIA--KTRDAFCTNLSKMLSSET 155 (448)
Q Consensus 84 ~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~----~~~~--~~~~~~~~~~~~~~~~~~ 155 (448)
+.. ...+..++.+.++..+.....-....+|..+|+... ......+ ...+ +.+.++.....+.-....
T Consensus 80 l~~----~G~lv~lL~~s~v~ryleF~~l~g~~v~~~~g~~~~vP~s~~~~~~s~ll~l~eKr~l~kfl~~v~~~~~~~~ 155 (443)
T PTZ00363 80 IMA----SGELVKILLHTDVTRYLEFKVIDGSYVYQKEGKIHKVPATDMEALSSPLMGFFEKNRCKNFLQYVSNYDENDP 155 (443)
T ss_pred eec----CChHHHHHhhcCccceeeeEEeceEEEEecCCeEEECCCCHHHHhhCCCcchhhHHHHHHHHHHHHhhccCCh
Confidence 654 467788889999887765433333344424665433 2111111 1111 112222222211111000
Q ss_pred -C---C-CCcccHHHHHHhhcCCCCChHHHHHHHHhhcc--ccCCCcccccccccC-CCcccccCCCCeeeeeCCCchHH
Q 013178 156 -T---R-DDDTSILGSQRLLKEVPMTPLEMAIDYFFNDY--EDAEPPRITSLKTTY-PRNQLVDFGEDSYFVADPRGFES 227 (448)
Q Consensus 156 -~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~~G~~~ 227 (448)
. . .+..++.++.+-... .....+.+...+.... .+...+...++..+. -...+..++... +..+.+|++.
T Consensus 156 ~~~~~~~~d~~T~~d~L~~~~l-s~~~~d~i~~~ial~~~~~~~~~pa~~tl~ri~~y~~S~~~~g~~p-~~yp~gG~g~ 233 (443)
T PTZ00363 156 ETHKGLNLKTMTMAQLYKKFGL-EDNTIDFVGHAVALYTNDDYLNKPAIETVMRIKLYMDSLSRYGKSP-FIYPLYGLGG 233 (443)
T ss_pred hhhcccCcccCCHHHHHHHhCC-CHHHHHHHHHHHHhhcccccccCCHHHHHHHHHHHHHHHhhccCCc-ceeeCCCHHH
Confidence 0 0 112344443222221 1111111111111100 011111111111100 001112333322 3445899999
Q ss_pred HHHHHHHhhhcccccccCCCceecCceeEEEEecCC-c-EEEEeCCCcEEEeCEEEEee
Q 013178 228 VVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKD-K-VTVKTEDGSVYQANYAIVSV 284 (448)
Q Consensus 228 l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~-~-v~V~~~~g~~~~ad~VI~a~ 284 (448)
|+++|++.+.. .|++++++++|++|..+++ + +.|++.+|++++|++||+..
T Consensus 234 L~qal~r~~a~------~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~ 286 (443)
T PTZ00363 234 LPQAFSRLCAI------YGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDP 286 (443)
T ss_pred HHHHHHHHHHH------cCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECc
Confidence 99999987765 6999999999999988754 3 56889999999999999854
No 33
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=99.74 E-value=1.4e-16 Score=145.93 Aligned_cols=85 Identities=15% Similarity=0.176 Sum_probs=65.1
Q ss_pred eeCCCchHHHHHHHHHhhhcccccccCCCceecCceeEEEEecCCc-EEEEeCCCcEEEeCEEEEeec-hhhccCCCccc
Q 013178 219 VADPRGFESVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDK-VTVKTEDGSVYQANYAIVSVS-IGVLQSDFIEF 296 (448)
Q Consensus 219 ~~~~~G~~~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~-v~V~~~~g~~~~ad~VI~a~p-~~~l~~~~~~~ 296 (448)
.++.||++.+..++++.+++ .|++|.++..|++|..++++ +-|..+||++++++.||+++. .....+++ -
T Consensus 257 ~Yp~GG~Gavs~aia~~~~~------~GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLl--p 328 (561)
T KOG4254|consen 257 GYPRGGMGAVSFAIAEGAKR------AGAEIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNATPWDTFEKLL--P 328 (561)
T ss_pred cCCCCChhHHHHHHHHHHHh------ccceeeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCCchHHHHHHhC--C
Confidence 35689999999999999988 69999999999999998876 559999999999999998654 44443322 1
Q ss_pred cCCCCHHHHHHHhhcCC
Q 013178 297 TPNLPLWKKLAINNFNM 313 (448)
Q Consensus 297 ~p~l~~~~~~~~~~~~~ 313 (448)
...||++. .++++.+
T Consensus 329 ~e~LPeef--~i~q~d~ 343 (561)
T KOG4254|consen 329 GEALPEEF--VIQQLDT 343 (561)
T ss_pred CccCCchh--hhhhccc
Confidence 12467664 4555544
No 34
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=99.68 E-value=3.4e-16 Score=147.53 Aligned_cols=233 Identities=12% Similarity=0.089 Sum_probs=133.5
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEEceeCCce-eeecceeccCCCCCCCHHHHHHHHcC-Cc
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNIGGHT-IELGANWVNSGGPKSSPSLQIAKKIK-LK 104 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~~~~g~~-~d~G~~~~~~~~~~~~~~~~l~~~lg-l~ 104 (448)
++||+|||||++||++|++|++.|. +|+|+|+++.+||++.+....+.. .+.|+|+++. ....+++++.++. ..
T Consensus 1 ~~DvvIIGaG~aGlsaA~~La~~G~-~V~viEk~~~iGG~~~~~~~~g~~~~~~G~h~f~t---~~~~v~~~~~~~~~~~ 76 (377)
T TIGR00031 1 MFDYIIVGAGLSGIVLANILAQLNK-RVLVVEKRNHIGGNCYDEVDETILFHQYGPHIFHT---NNQYVWDYISPFFELN 76 (377)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCC-eEEEEecCCCCCCceeeecCCCceEEeecceeEec---CcHHHHHHHHhhcccc
Confidence 3799999999999999999999999 899999999999999987666654 4899999998 6777888877753 22
Q ss_pred eeecccccccceEEecCCccccHHHH----HHHHH--HHHHhHHHHHHHhhhccCCCCCCCcccHHHHHHhhcCCCCChH
Q 013178 105 TFYSDYANLTSNIYKQDGGLYQKHVV----ESAVR--IAKTRDAFCTNLSKMLSSETTRDDDTSILGSQRLLKEVPMTPL 178 (448)
Q Consensus 105 ~~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (448)
.. .. ....+. +|+.++.+.- ..+.. ......+.+. ......... +...+.++. ++.....-
T Consensus 77 ~~----~~-~~~~~~-~g~~~~~P~~~~~i~~l~~~~~~~~~~~~l~---~~~~~~~~~-~~~~~~e~~---d~~~~~~G 143 (377)
T TIGR00031 77 NY----QH-RVLALY-NNLDLTLPFNFNQFRKLLGVKDAQELQNFFN---AQFKYGDHV-PLEELQEIA---DPDIQLLY 143 (377)
T ss_pred ce----eE-EEEEEE-CCeEEccCCCHHHHHHhcccchHHHHHHHHH---HHhhcccCC-CCCCHHHHH---HHHHHHHH
Confidence 11 11 112333 6776663322 12111 0111111111 111100000 001111110 00000111
Q ss_pred HHHHHHHhhcc---ccCCCcccccccccC--CC-cccc-cCCCCeeeeeCCCchHHHHHHHHHhhhcccccccCCCceec
Q 013178 179 EMAIDYFFNDY---EDAEPPRITSLKTTY--PR-NQLV-DFGEDSYFVADPRGFESVVHSVAKQFLSHRHQVIRDPRLKL 251 (448)
Q Consensus 179 ~~~~~~~~~~~---~~~~~~~~~s~~~~~--~~-~~~~-~~~~~~~~~~~~~G~~~l~~~l~~~l~~~~~~~~~g~~i~~ 251 (448)
+.+.+.+...+ .++.++.++++..+. +. .... .+..+.+...+++|++.++++|.+. .+++|++
T Consensus 144 ~~lye~ff~~Yt~K~Wg~~p~el~~~~~~RvP~~~~~d~~yf~d~~q~~P~~Gyt~~~~~ml~~---------~~i~v~l 214 (377)
T TIGR00031 144 QFLYQKVYKPYTVKQWGLPAEEIDPFVIGRVPVVLSEDSSYFPDRYQGLPKGGYTKLFEKMLDH---------PLIDVKL 214 (377)
T ss_pred HHHHHHhccccCceeeCCChHHCCHHHeEecceEecCCCCcccccccccccccHHHHHHHHHhc---------CCCEEEe
Confidence 12222221111 156666655543221 10 1111 1233445566789999999999987 6889999
Q ss_pred CceeEEEEecCCcEEEEeCCCcEEEeCEEEEeechhhc
Q 013178 252 NKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSIGVL 289 (448)
Q Consensus 252 ~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~l 289 (448)
|+.+..++..++++.+.. + .+. ++||.|.|++.+
T Consensus 215 ~~~~~~~~~~~~~~~~~~--~-~~~-~~vi~Tg~id~~ 248 (377)
T TIGR00031 215 NCHINLLKDKDSQLHFAN--K-AIR-KPVIYTGLIDQL 248 (377)
T ss_pred CCccceeeccccceeecc--c-ccc-CcEEEecCchHH
Confidence 998888886555455532 2 333 889999997766
No 35
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=99.66 E-value=1.1e-16 Score=112.12 Aligned_cols=68 Identities=32% Similarity=0.577 Sum_probs=60.1
Q ss_pred EECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEEceeCCceeeecceeccCCCCCCCHHHHHHHHc
Q 013178 32 IVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNIGGHTIELGANWVNSGGPKSSPSLQIAKKI 101 (448)
Q Consensus 32 IIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~l~~~l 101 (448)
|||||++||++|+.|+++|+ +|+|+|+++++||++.+...++..+|.|+++++.. ..++++.+++++|
T Consensus 1 IiGaG~sGl~aA~~L~~~g~-~v~v~E~~~~~GG~~~~~~~~g~~~d~g~~~~~~~-~~~~~~~~l~~~L 68 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGY-RVTVFEKNDRLGGRARSFRIPGYRFDLGAHYFFPP-DDYPNLFRLLREL 68 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTS-EEEEEESSSSSSGGGCEEEETTEEEETSS-SEEET-TSCHHHHHHHHTT
T ss_pred CEeeCHHHHHHHHHHHHCCC-cEEEEecCcccCcceeEEEECCEEEeeccEEEeCC-CCchHHHHHHcCC
Confidence 89999999999999999999 89999999999999999999999999999999872 1467788888875
No 36
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.59 E-value=1.2e-14 Score=132.83 Aligned_cols=57 Identities=11% Similarity=0.203 Sum_probs=53.1
Q ss_pred CchHHHHHHHHHhhhcccccccCCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeec
Q 013178 223 RGFESVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVS 285 (448)
Q Consensus 223 ~G~~~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p 285 (448)
...+.|+++|.+++++ .|++|+++++|.+|++++.+..|.+.+|.+++||.+|+|+.
T Consensus 108 dkA~~Iv~~ll~~~~~------~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lilAtG 164 (408)
T COG2081 108 DKASPIVDALLKELEA------LGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLILATG 164 (408)
T ss_pred cchHHHHHHHHHHHHH------cCcEEEecceEEeEEecCceEEEEcCCCCEEEccEEEEecC
Confidence 5678899999999988 79999999999999999989999999998999999999995
No 37
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=99.55 E-value=9.2e-14 Score=135.51 Aligned_cols=75 Identities=21% Similarity=0.275 Sum_probs=62.7
Q ss_pred CCCCCCcEEEECCChHHHHHHHHHHHc----CCCcEEEEecCCCCCceEEEce--eCCceeeecceeccCCCCCCCHHHH
Q 013178 23 TSPPSNSVIIVGAGMSGFMAAKTLEEA----GYKDFIILEASSRVGGRLHKGN--IGGHTIELGANWVNSGGPKSSPSLQ 96 (448)
Q Consensus 23 ~~~~~~dViIIGaGiaGL~aA~~L~~~----G~~~V~vlE~~~~~GGr~~s~~--~~g~~~d~G~~~~~~~~~~~~~~~~ 96 (448)
....+.+|+|||||+|||+||++|++. |. +|+|||+++.+||++.+.. .+|+.++.|.+. .. .+.++++
T Consensus 18 ~~~~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~-~VtIlEk~~~~GG~~~~~~~~~~Gy~~~~G~~~-~~---~y~~l~~ 92 (576)
T PRK13977 18 EGVDNKKAYIIGSGLASLAAAVFLIRDGQMPGE-NITILEELDVPGGSLDGAGNPEKGYVARGGREM-EN---HFECLWD 92 (576)
T ss_pred CCCCCCeEEEECCCHHHHHHHHHHHHccCCCCC-cEEEEeCCCCCCCCccCcccccCCEEEECCCCc-cc---hHHHHHH
Confidence 334568999999999999999999996 67 8999999999999998754 568888888664 44 6788999
Q ss_pred HHHHcC
Q 013178 97 IAKKIK 102 (448)
Q Consensus 97 l~~~lg 102 (448)
+++++.
T Consensus 93 ll~~ip 98 (576)
T PRK13977 93 LFRSIP 98 (576)
T ss_pred HHHhcc
Confidence 998863
No 38
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.54 E-value=5.3e-14 Score=134.51 Aligned_cols=56 Identities=25% Similarity=0.383 Sum_probs=42.0
Q ss_pred chHHHHHHHHHhhhcccccccCCCceecCceeEEEEecCCc-EEEEeCCCcEEEeCEEEEeec
Q 013178 224 GFESVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDK-VTVKTEDGSVYQANYAIVSVS 285 (448)
Q Consensus 224 G~~~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~-v~V~~~~g~~~~ad~VI~a~p 285 (448)
-..++++.|.+.+.+ .|++|+++++|++|+.++++ +.|.++++.++.||+||+|+.
T Consensus 107 ~a~~Vv~~L~~~l~~------~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vILAtG 163 (409)
T PF03486_consen 107 KASSVVDALLEELKR------LGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVILATG 163 (409)
T ss_dssp -HHHHHHHHHHHHHH------HT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEEEE---
T ss_pred cHHHHHHHHHHHHHH------cCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEEEEecC
Confidence 466788888888876 69999999999999998877 789886777999999999985
No 39
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.51 E-value=1.1e-13 Score=131.01 Aligned_cols=197 Identities=17% Similarity=0.166 Sum_probs=114.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcC--CCcEEEEecCCCCCceEEEcee----CCceeeec---ceeccCCCCCCCHHHH
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAG--YKDFIILEASSRVGGRLHKGNI----GGHTIELG---ANWVNSGGPKSSPSLQ 96 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G--~~~V~vlE~~~~~GGr~~s~~~----~g~~~d~G---~~~~~~~~~~~~~~~~ 96 (448)
+++||+|||||+.|+++|++|++.+ + +|.|+|+.+.+|-..++..- .|..+..| +.+... .....++
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~-~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~---g~~~~~~ 77 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDL-SVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVA---GNINEFA 77 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCc-eEEEEEccCccccccccCcccceeccccCCCcchhhHHHHH---HHHHHHH
Confidence 5789999999999999999999998 7 89999999999877766221 12222111 111111 1123366
Q ss_pred HHHHcCCceeecccccccceEEecCCccccHHHHHHHHHHHHHhHHHHHHHhhhccCCCCCCCcccHHHHHHhhcCCCCC
Q 013178 97 IAKKIKLKTFYSDYANLTSNIYKQDGGLYQKHVVESAVRIAKTRDAFCTNLSKMLSSETTRDDDTSILGSQRLLKEVPMT 176 (448)
Q Consensus 97 l~~~lgl~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (448)
++++++++.... ...++-.+. .. .+.++.+.+...... . .++...+..++.++.+.-
T Consensus 78 ~~kq~~~~f~~~-----g~l~vA~~e-----~e-----------~~~L~~l~~~~~~ng-v-~~~~~ld~~~i~~~eP~l 134 (429)
T COG0579 78 ICKQLGIPFINC-----GKLSVATGE-----EE-----------VERLEKLYERGKANG-V-FDLEILDKEEIKELEPLL 134 (429)
T ss_pred HHHHhCCccccc-----CeEEEEECh-----HH-----------HHHHHHHHHHHhhCC-C-cceeecCHHHHHhhCccc
Confidence 777777542221 011111010 00 111222222222222 1 122223333333332210
Q ss_pred hHHHHHHHHhhccccCCCcccccccccCCCcccccCCCCeeeeeC---CCchHHHHHHHHHhhhcccccccCCCceecCc
Q 013178 177 PLEMAIDYFFNDYEDAEPPRITSLKTTYPRNQLVDFGEDSYFVAD---PRGFESVVHSVAKQFLSHRHQVIRDPRLKLNK 253 (448)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~---~~G~~~l~~~l~~~l~~~~~~~~~g~~i~~~~ 253 (448)
... .......+ .-.+..+..+|++.+.+ .|++|++|+
T Consensus 135 ~~~----------------------------------~~aal~~p~~giV~~~~~t~~l~e~a~~------~g~~i~ln~ 174 (429)
T COG0579 135 NEG----------------------------------AVAALLVPSGGIVDPGELTRALAEEAQA------NGVELRLNT 174 (429)
T ss_pred ccc----------------------------------ceeeEEcCCCceEcHHHHHHHHHHHHHH------cCCEEEecC
Confidence 000 00000001 12366788999999887 699999999
Q ss_pred eeEEEEecCCc-EEEEeCCCcE-EEeCEEEEeechhhc
Q 013178 254 VVRNISYSKDK-VTVKTEDGSV-YQANYAIVSVSIGVL 289 (448)
Q Consensus 254 ~V~~I~~~~~~-v~V~~~~g~~-~~ad~VI~a~p~~~l 289 (448)
+|+.|++.+++ ..+.+.+|++ ++|+.||.|.+...+
T Consensus 175 eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad 212 (429)
T COG0579 175 EVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYAD 212 (429)
T ss_pred eeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhHH
Confidence 99999999885 5678888866 999999999987654
No 40
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=99.50 E-value=8.3e-14 Score=122.80 Aligned_cols=71 Identities=21% Similarity=0.348 Sum_probs=63.3
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEEcee--CCc-eeeecceeccCCCCCCCHHHHHHHHc
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNI--GGH-TIELGANWVNSGGPKSSPSLQIAKKI 101 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~~~--~g~-~~d~G~~~~~~~~~~~~~~~~l~~~l 101 (448)
++|.+|||||++|+.+|..|++.|+ +|+|+|+++.+||.|.+... .|. ..--|+|.||. ....+++++..+
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk-~VLIvekR~HIGGNaYde~d~~tGIlvHkYGpHIFHT---~~~~Vwdyv~~F 74 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGK-RVLIVEKRNHIGGNAYDEADDQTGILVHKYGPHIFHT---DNKRVWDYVNQF 74 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCC-EEEEEeccccCCCccccccCCCCCeEEeeccCceeec---CchHHHHHHhhh
Confidence 4799999999999999999999999 89999999999999999765 354 44679999999 889999998876
No 41
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.42 E-value=5.9e-13 Score=127.61 Aligned_cols=57 Identities=18% Similarity=0.272 Sum_probs=48.1
Q ss_pred hHHHHHHHHHhhhcccccccCCCceecCceeEEEEecCCcEE-EEeCCCcEEEeCEEEEeechhh
Q 013178 225 FESVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVT-VKTEDGSVYQANYAIVSVSIGV 288 (448)
Q Consensus 225 ~~~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~-V~~~~g~~~~ad~VI~a~p~~~ 288 (448)
...+.+.|.+.+.+ .|++|+.+++|++|..++++|. |.+++|+ ++||+||+|+.+..
T Consensus 146 ~~~l~~~l~~~~~~------~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s 203 (358)
T PF01266_consen 146 PRRLIQALAAEAQR------AGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWS 203 (358)
T ss_dssp HHHHHHHHHHHHHH------TT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGH
T ss_pred ccchhhhhHHHHHH------hhhhccccccccchhhcccccccccccccc-cccceeEecccccc
Confidence 67888888888877 6999999999999999999998 9999995 99999999997643
No 42
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.42 E-value=9.8e-13 Score=127.53 Aligned_cols=56 Identities=21% Similarity=0.354 Sum_probs=48.1
Q ss_pred hHHHHHHHHHhhhcccccccCCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeechh
Q 013178 225 FESVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSIG 287 (448)
Q Consensus 225 ~~~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~ 287 (448)
...+.++|.+.+.+ .|++|+++++|++|+.+++++.|.+.+| +++||+||+|+...
T Consensus 148 ~~~l~~aL~~~~~~------~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~vV~A~G~~ 203 (393)
T PRK11728 148 YRAVAEAMAELIQA------RGGEIRLGAEVTALDEHANGVVVRTTQG-EYEARTLINCAGLM 203 (393)
T ss_pred HHHHHHHHHHHHHh------CCCEEEcCCEEEEEEecCCeEEEEECCC-EEEeCEEEECCCcc
Confidence 46788888888766 5899999999999998888888888887 89999999998754
No 43
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.37 E-value=9.9e-12 Score=103.99 Aligned_cols=68 Identities=31% Similarity=0.388 Sum_probs=55.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEEceeCCceeeecceeccCCCCCCCHHHHHHHHcCCce
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNIGGHTIELGANWVNSGGPKSSPSLQIAKKIKLKT 105 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~l~~~lgl~~ 105 (448)
...||+|||||+|||+|||+|+++|. +|+|+|++-.+||-++. |++.|+.. .-..+..++++++|++.
T Consensus 29 ~esDViIVGaGPsGLtAAyyLAk~g~-kV~i~E~~ls~GGG~w~----------GGmlf~~i-Vv~~~a~~iL~e~gI~y 96 (262)
T COG1635 29 LESDVIIVGAGPSGLTAAYYLAKAGL-KVAIFERKLSFGGGIWG----------GGMLFNKI-VVREEADEILDEFGIRY 96 (262)
T ss_pred hhccEEEECcCcchHHHHHHHHhCCc-eEEEEEeecccCCcccc----------ccccccee-eecchHHHHHHHhCCcc
Confidence 35799999999999999999999999 79999999999986554 55666552 24566778888888873
No 44
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.34 E-value=8.1e-12 Score=120.85 Aligned_cols=54 Identities=26% Similarity=0.290 Sum_probs=44.3
Q ss_pred HHHHHHHHHhhhcccccccCCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeech
Q 013178 226 ESVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSI 286 (448)
Q Consensus 226 ~~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~ 286 (448)
..+...|.+.+.+ .|++++.+++|++|+.+++++.|.+.++ ++.+|+||+|+..
T Consensus 145 ~~~~~~l~~~~~~------~g~~~~~~~~V~~i~~~~~~~~v~~~~~-~i~a~~vV~aaG~ 198 (380)
T TIGR01377 145 EKALRALQELAEA------HGATVRDGTKVVEIEPTELLVTVKTTKG-SYQANKLVVTAGA 198 (380)
T ss_pred HHHHHHHHHHHHH------cCCEEECCCeEEEEEecCCeEEEEeCCC-EEEeCEEEEecCc
Confidence 3566666666554 5899999999999999888888888777 8999999999974
No 45
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.32 E-value=5e-11 Score=117.11 Aligned_cols=63 Identities=21% Similarity=0.200 Sum_probs=44.7
Q ss_pred hHHHHHHHHHhhhcccccccCCCceecCceeEEEEec-CCcEEEEeCCCcEEEeCEEEEeechhh
Q 013178 225 FESVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYS-KDKVTVKTEDGSVYQANYAIVSVSIGV 288 (448)
Q Consensus 225 ~~~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~-~~~v~V~~~~g~~~~ad~VI~a~p~~~ 288 (448)
+..+...+++.+.+...-.+.+++|+++++|++|+++ ++.+.|.|.+| +++||+||+|+....
T Consensus 210 ~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S 273 (497)
T PTZ00383 210 YQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGYS 273 (497)
T ss_pred HHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChhH
Confidence 4567777777764300000012689999999999988 44578989888 899999999997543
No 46
>PRK07236 hypothetical protein; Provisional
Probab=99.32 E-value=5.8e-11 Score=114.92 Aligned_cols=57 Identities=16% Similarity=0.213 Sum_probs=45.7
Q ss_pred hHHHHHHHHHhhhcccccccCCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeechhhc
Q 013178 225 FESVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSIGVL 289 (448)
Q Consensus 225 ~~~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~l 289 (448)
...+...|.+.+ .+.+|+++++|++|+.++++|+|++.+|+++++|.||.|=..+..
T Consensus 99 ~~~l~~~L~~~~--------~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~S~ 155 (386)
T PRK07236 99 WNVLYRALRAAF--------PAERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRST 155 (386)
T ss_pred HHHHHHHHHHhC--------CCcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCch
Confidence 344556666655 356899999999999988889999999999999999999765543
No 47
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.31 E-value=8.1e-11 Score=114.23 Aligned_cols=57 Identities=18% Similarity=0.233 Sum_probs=46.8
Q ss_pred HHHHHHHHHhhhcccccccCCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeechhh
Q 013178 226 ESVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSIGV 288 (448)
Q Consensus 226 ~~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~ 288 (448)
..+.+.|.+.+.+ .|++++.+++|++++.+++++.|++.+|+++++|.||.|.....
T Consensus 113 ~~l~~~L~~~~~~------~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~S 169 (392)
T PRK08773 113 DLLVDRLWAALHA------AGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALAIAADGAAS 169 (392)
T ss_pred HHHHHHHHHHHHh------CCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEEEEecCCCc
Confidence 3455666666654 58999999999999998888999988888999999999987643
No 48
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.29 E-value=2.7e-11 Score=118.27 Aligned_cols=56 Identities=11% Similarity=0.181 Sum_probs=43.8
Q ss_pred HHHHHHHHHhhhcccccccCCCceecCceeEEEEecCCcEEEEeCCC-----cEEEeCEEEEeechh
Q 013178 226 ESVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVTVKTEDG-----SVYQANYAIVSVSIG 287 (448)
Q Consensus 226 ~~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~g-----~~~~ad~VI~a~p~~ 287 (448)
..+...|.+.+.+ .|++|+.+++|++|+.+++++.+.+.++ .+++||+||+|+.+.
T Consensus 197 ~~~~~~l~~~a~~------~G~~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~ 257 (410)
T PRK12409 197 HKFTTGLAAACAR------LGVQFRYGQEVTSIKTDGGGVVLTVQPSAEHPSRTLEFDGVVVCAGVG 257 (410)
T ss_pred HHHHHHHHHHHHh------CCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCccceEecCEEEECCCcC
Confidence 4566777777665 6999999999999998887777654432 379999999999864
No 49
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.28 E-value=7.6e-11 Score=113.90 Aligned_cols=55 Identities=29% Similarity=0.318 Sum_probs=44.6
Q ss_pred HHHHHHHHHhhhcccccccCCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeechh
Q 013178 226 ESVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSIG 287 (448)
Q Consensus 226 ~~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~ 287 (448)
..+...+.+.+.+ .|++++++++|++|+.+++++.|.+++| ++++|+||+|+...
T Consensus 149 ~~~~~~~~~~~~~------~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~ 203 (376)
T PRK11259 149 ELAIKAHLRLARE------AGAELLFNEPVTAIEADGDGVTVTTADG-TYEAKKLVVSAGAW 203 (376)
T ss_pred HHHHHHHHHHHHH------CCCEEECCCEEEEEEeeCCeEEEEeCCC-EEEeeEEEEecCcc
Confidence 3455555555544 5899999999999999888888999888 89999999999754
No 50
>PRK06847 hypothetical protein; Provisional
Probab=99.27 E-value=9.9e-11 Score=113.03 Aligned_cols=56 Identities=18% Similarity=0.213 Sum_probs=45.5
Q ss_pred HHHHHHHHhhhcccccccCCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeechhh
Q 013178 227 SVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSIGV 288 (448)
Q Consensus 227 ~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~ 288 (448)
.+.+.|.+.+.+ .|++|+++++|++|+.+++++.|.+.+|+++++|.||.|.....
T Consensus 108 ~l~~~L~~~~~~------~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~s 163 (375)
T PRK06847 108 ALARILADAARA------AGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADGLYS 163 (375)
T ss_pred HHHHHHHHHHHH------hCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcCCCc
Confidence 345555555543 48899999999999998888999998998999999999998653
No 51
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.26 E-value=1.3e-10 Score=113.84 Aligned_cols=38 Identities=29% Similarity=0.514 Sum_probs=34.7
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCC
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRV 63 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~ 63 (448)
+.++||+|||||++||++|..|+++|+ +|+|+|+++..
T Consensus 16 ~~~~dV~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~~ 53 (415)
T PRK07364 16 SLTYDVAIVGGGIVGLTLAAALKDSGL-RIALIEAQPAE 53 (415)
T ss_pred ccccCEEEECcCHHHHHHHHHHhcCCC-EEEEEecCCcc
Confidence 457999999999999999999999999 89999998654
No 52
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.26 E-value=7.5e-10 Score=110.41 Aligned_cols=45 Identities=16% Similarity=0.290 Sum_probs=39.7
Q ss_pred CCCCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceE
Q 013178 22 PTSPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRL 67 (448)
Q Consensus 22 ~~~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~ 67 (448)
|.+.+.+||+|||||++|+++|+.|++.|. +|+|+|+++..+|..
T Consensus 1 ~~~~~~~DVvIIGGGi~G~~~A~~la~rGl-~V~LvEk~d~~~GtS 45 (508)
T PRK12266 1 MTMMETYDLLVIGGGINGAGIARDAAGRGL-SVLLCEQDDLASATS 45 (508)
T ss_pred CCCCCcCCEEEECcCHHHHHHHHHHHHCCC-eEEEEecCCCCCCcc
Confidence 345678999999999999999999999999 799999987766644
No 53
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=99.25 E-value=3.3e-10 Score=111.01 Aligned_cols=46 Identities=20% Similarity=0.260 Sum_probs=39.2
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHc--CCCcEEEEecCCCCCceEEEc
Q 013178 24 SPPSNSVIIVGAGMSGFMAAKTLEEA--GYKDFIILEASSRVGGRLHKG 70 (448)
Q Consensus 24 ~~~~~dViIIGaGiaGL~aA~~L~~~--G~~~V~vlE~~~~~GGr~~s~ 70 (448)
....+||+||||||+|+++|+.|++. |. +|+|+|+.+.+|-..+..
T Consensus 3 ~~~~~DvvIIGgGI~G~sla~~L~~~~~~~-~V~vlEr~~~~a~~sS~~ 50 (497)
T PRK13339 3 KSESKDVVLVGAGILSTTFGVLLKELDPDW-NIEVVERLDSPAIESSNE 50 (497)
T ss_pred CCccCCEEEECchHHHHHHHHHHHhCCCCC-eEEEEEcCCCcchhcCCC
Confidence 45678999999999999999999998 78 899999966777655543
No 54
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.24 E-value=2.7e-10 Score=102.42 Aligned_cols=41 Identities=44% Similarity=0.583 Sum_probs=38.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceE
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRL 67 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~ 67 (448)
..+||+|||||++||+||+.|++.|. +|+|+|++..+||.+
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~-~V~vlEk~~~~Ggg~ 60 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGL-KVCVLERSLAFGGGS 60 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCC-cEEEEecCCCCCccc
Confidence 47899999999999999999999999 799999999998754
No 55
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.24 E-value=1.4e-10 Score=114.61 Aligned_cols=54 Identities=15% Similarity=0.198 Sum_probs=43.6
Q ss_pred hHHHHHHHHHhhhcccccccCCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeech
Q 013178 225 FESVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSI 286 (448)
Q Consensus 225 ~~~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~ 286 (448)
...++..|++.+.+ .|++|+.+++|++|+. ++.+.|.+++| +++||+||+|+..
T Consensus 182 P~~l~~~L~~~a~~------~Gv~i~~~t~V~~i~~-~~~~~v~t~~g-~v~A~~VV~Atga 235 (460)
T TIGR03329 182 PGLLVRGLRRVALE------LGVEIHENTPMTGLEE-GQPAVVRTPDG-QVTADKVVLALNA 235 (460)
T ss_pred HHHHHHHHHHHHHH------cCCEEECCCeEEEEee-CCceEEEeCCc-EEECCEEEEcccc
Confidence 34577777777665 5999999999999986 45577888888 7999999999853
No 56
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.24 E-value=1.7e-10 Score=104.07 Aligned_cols=41 Identities=39% Similarity=0.532 Sum_probs=37.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceE
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRL 67 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~ 67 (448)
..+||+|||||+|||+||+.|+++|+ +|+|+|++..+||.+
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~G~-~V~liEk~~~~Ggg~ 64 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKAGL-KVAVFERKLSFGGGM 64 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhCCC-eEEEEecCCCCCCcc
Confidence 46899999999999999999999999 799999999888754
No 57
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.23 E-value=3.3e-10 Score=111.81 Aligned_cols=44 Identities=16% Similarity=0.296 Sum_probs=37.7
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHc--CCCcEEEEecCCCCCceEEE
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEA--GYKDFIILEASSRVGGRLHK 69 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~--G~~~V~vlE~~~~~GGr~~s 69 (448)
..++||+|||||+.|+++||+|++. |. +|+||||.+.+|+...+
T Consensus 3 ~~~~DVvIIGgGIiG~slA~~L~~~~~g~-~V~VlEk~~~~a~~sS~ 48 (494)
T PRK05257 3 ESKTDVVLIGGGIMSATLGTLLKELEPEW-SITMFERLDGVALESSN 48 (494)
T ss_pred CccceEEEECcHHHHHHHHHHHHHhCCCC-eEEEEEcCCchhhhcCC
Confidence 4568999999999999999999995 77 79999998877765543
No 58
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.23 E-value=1.8e-10 Score=111.60 Aligned_cols=55 Identities=13% Similarity=0.137 Sum_probs=44.8
Q ss_pred HHHHHHHHhhhcccccccCC-CceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeechh
Q 013178 227 SVVHSVAKQFLSHRHQVIRD-PRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSIG 287 (448)
Q Consensus 227 ~l~~~l~~~l~~~~~~~~~g-~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~ 287 (448)
.+.+.|.+.+.+ .| ++|+.+++|++|+.+++++.|++.+|+++++|.||.|....
T Consensus 107 ~l~~~L~~~~~~------~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~adG~~ 162 (385)
T TIGR01988 107 VLQQALWERLQE------YPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVGADGAN 162 (385)
T ss_pred HHHHHHHHHHHh------CCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEEeCCCC
Confidence 455556665544 34 89999999999999888899999999889999999988754
No 59
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.22 E-value=1.6e-10 Score=112.75 Aligned_cols=57 Identities=16% Similarity=0.163 Sum_probs=47.0
Q ss_pred HHHHHHHHhhhcccccccCCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeechhhc
Q 013178 227 SVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSIGVL 289 (448)
Q Consensus 227 ~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~l 289 (448)
.+.+.|.+.+.+ .|++|+.+++|++|+.+++++.|++.+|++++||.||.|...+..
T Consensus 113 ~l~~~L~~~~~~------~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vVgAdG~~S~ 169 (405)
T PRK05714 113 VVQDALLERLHD------SDIGLLANARLEQMRRSGDDWLLTLADGRQLRAPLVVAADGANSA 169 (405)
T ss_pred HHHHHHHHHHhc------CCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCch
Confidence 455566666654 488999999999999998889999999988999999999886543
No 60
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.22 E-value=1.2e-09 Score=105.84 Aligned_cols=55 Identities=13% Similarity=0.158 Sum_probs=43.0
Q ss_pred HHHHHHHHhhhcccccccCCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeechh
Q 013178 227 SVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSIG 287 (448)
Q Consensus 227 ~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~ 287 (448)
.+.+.|.+.+.+ .+...+++++|++++.+++++.|++++|+++++|.||.|....
T Consensus 112 ~l~~~L~~~~~~------~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~ 166 (388)
T PRK07494 112 LLNRALEARVAE------LPNITRFGDEAESVRPREDEVTVTLADGTTLSARLVVGADGRN 166 (388)
T ss_pred HHHHHHHHHHhc------CCCcEEECCeeEEEEEcCCeEEEEECCCCEEEEeEEEEecCCC
Confidence 455566665543 2333488999999999888999999889899999999998764
No 61
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.22 E-value=5e-11 Score=116.34 Aligned_cols=51 Identities=29% Similarity=0.380 Sum_probs=39.1
Q ss_pred cccccCCCCCCCCCCcEEEECCChHHHHHHHHHHHc-CCCcEEEEecCCCCCc
Q 013178 14 LPFTLVIAPTSPPSNSVIIVGAGMSGFMAAKTLEEA-GYKDFIILEASSRVGG 65 (448)
Q Consensus 14 ~~~~~~~~~~~~~~~dViIIGaGiaGL~aA~~L~~~-G~~~V~vlE~~~~~GG 65 (448)
...+.++.+. .+.+||+|||||++|+++|++|++. |.++|+|||++...+|
T Consensus 18 ~~~~~~~~~~-~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~~~g 69 (407)
T TIGR01373 18 WKPAWRSPEP-KPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLGGG 69 (407)
T ss_pred CCcccCCCCC-CccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccccCc
Confidence 4444555544 4579999999999999999999995 8427999999753333
No 62
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.21 E-value=3.6e-10 Score=110.21 Aligned_cols=56 Identities=20% Similarity=0.247 Sum_probs=46.4
Q ss_pred HHHHHHHHHhhhcccccccCCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeechh
Q 013178 226 ESVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSIG 287 (448)
Q Consensus 226 ~~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~ 287 (448)
..+.+.|.+.+.+ .|++|+.+++|++|+.+++++.|++.+|.++++|.||.|....
T Consensus 111 ~~l~~~L~~~~~~------~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI~AdG~~ 166 (403)
T PRK07333 111 RVLINALRKRAEA------LGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLVAADGAR 166 (403)
T ss_pred HHHHHHHHHHHHh------CCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEEcCCCC
Confidence 3456666666654 4899999999999999888899998898899999999998754
No 63
>PRK07588 hypothetical protein; Provisional
Probab=99.21 E-value=2.4e-10 Score=110.93 Aligned_cols=45 Identities=16% Similarity=0.152 Sum_probs=39.9
Q ss_pred CCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeechhhcc
Q 013178 246 DPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSIGVLQ 290 (448)
Q Consensus 246 g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~l~ 290 (448)
+++|+++++|++|+.++++|.|++++|+++++|.||.|-..+..-
T Consensus 116 ~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~S~v 160 (391)
T PRK07588 116 QVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLHSHV 160 (391)
T ss_pred CeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCCccc
Confidence 689999999999999988999999999889999999998865443
No 64
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.20 E-value=1.3e-10 Score=111.63 Aligned_cols=34 Identities=38% Similarity=0.584 Sum_probs=32.0
Q ss_pred CcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCC
Q 013178 28 NSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSR 62 (448)
Q Consensus 28 ~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~ 62 (448)
+||+|||||++|+++|++|++.|+ +|+|||++..
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~-~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGL-SVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCCC
Confidence 599999999999999999999999 7999999864
No 65
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.20 E-value=4.7e-10 Score=110.67 Aligned_cols=57 Identities=18% Similarity=0.359 Sum_probs=43.8
Q ss_pred hHHHHHHHHHhhhcccccccCCCceecCceeEEEEecCC-cEEEEe---CCC--cEEEeCEEEEeechh
Q 013178 225 FESVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKD-KVTVKT---EDG--SVYQANYAIVSVSIG 287 (448)
Q Consensus 225 ~~~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~-~v~V~~---~~g--~~~~ad~VI~a~p~~ 287 (448)
...+..+|.+.+.+ .|++|+++++|++|+.+++ ++.|.+ .+| .+++||+||+|+...
T Consensus 177 p~~l~~aL~~~a~~------~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~ 239 (483)
T TIGR01320 177 FGALTKQLLGYLVQ------NGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGG 239 (483)
T ss_pred HHHHHHHHHHHHHh------CCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcc
Confidence 46688888888766 5999999999999998654 566643 334 368999999998753
No 66
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.19 E-value=3e-10 Score=110.53 Aligned_cols=57 Identities=19% Similarity=0.210 Sum_probs=44.5
Q ss_pred HHHHHHHhhhcccccccCCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeechhhc
Q 013178 228 VVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSIGVL 289 (448)
Q Consensus 228 l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~l 289 (448)
+.+.|.+.+.+. .+++++.+++|++++.+++++.|.+.+|++++||.||.|......
T Consensus 111 l~~~L~~~~~~~-----~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~ 167 (396)
T PRK08163 111 IHLSLLEAVLDH-----PLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALIGCDGVKSV 167 (396)
T ss_pred HHHHHHHHHHhc-----CCcEEEeCCEEEEEecCCCceEEEEcCCCEEecCEEEECCCcChH
Confidence 444555554331 358999999999999888889999989988999999999876543
No 67
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.19 E-value=6e-10 Score=109.12 Aligned_cols=45 Identities=31% Similarity=0.548 Sum_probs=40.6
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEE
Q 013178 24 SPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHK 69 (448)
Q Consensus 24 ~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s 69 (448)
+...++|+|||||+|||+||++|.+.|+ +|+|||+++.+||....
T Consensus 7 ~~~~~~VaIIGAG~aGL~aA~~l~~~G~-~v~vfE~~~~vGG~W~~ 51 (461)
T PLN02172 7 PINSQHVAVIGAGAAGLVAARELRREGH-TVVVFEREKQVGGLWVY 51 (461)
T ss_pred CCCCCCEEEECCcHHHHHHHHHHHhcCC-eEEEEecCCCCcceeec
Confidence 4457899999999999999999999999 89999999999996643
No 68
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.19 E-value=2.7e-10 Score=111.55 Aligned_cols=56 Identities=18% Similarity=0.217 Sum_probs=45.2
Q ss_pred hHHHHHHHHHhhhcccccccCCCceecCceeEEEEecCCcEE-EEeCCCcEEEeCEEEEeechh
Q 013178 225 FESVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVT-VKTEDGSVYQANYAIVSVSIG 287 (448)
Q Consensus 225 ~~~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~-V~~~~g~~~~ad~VI~a~p~~ 287 (448)
...+...|.+.+.+ .|++|+++++|++|+.+++++. |.+.++ +++||+||+|+...
T Consensus 200 p~~~~~~l~~~~~~------~G~~i~~~~~V~~i~~~~~~~~~v~t~~~-~~~a~~VV~a~G~~ 256 (416)
T PRK00711 200 CQLFTQRLAAMAEQ------LGVKFRFNTPVDGLLVEGGRITGVQTGGG-VITADAYVVALGSY 256 (416)
T ss_pred HHHHHHHHHHHHHH------CCCEEEcCCEEEEEEecCCEEEEEEeCCc-EEeCCEEEECCCcc
Confidence 44677777777665 5999999999999998887764 777666 89999999999863
No 69
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.18 E-value=5.5e-10 Score=107.98 Aligned_cols=61 Identities=15% Similarity=0.178 Sum_probs=49.2
Q ss_pred hHHHHHHHHHhhhcccccccCCCceecCceeEEEEecCCcEEEEeC-CCcEEEeCEEEEeechhhcc
Q 013178 225 FESVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVTVKTE-DGSVYQANYAIVSVSIGVLQ 290 (448)
Q Consensus 225 ~~~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~-~g~~~~ad~VI~a~p~~~l~ 290 (448)
...+.+.|.+.+.+. .+++++.+++|+.++.+++.+.|+.. +|++++||.||-|=..+..-
T Consensus 103 ~~~l~~~L~~~~~~~-----~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgADG~~S~v 164 (387)
T COG0654 103 RSDLLNALLEAARAL-----PNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGADGANSAV 164 (387)
T ss_pred hHHHHHHHHHHHhhC-----CCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECCCCchHH
Confidence 455667777776542 45899999999999999999888888 99899999999998765443
No 70
>PRK09126 hypothetical protein; Provisional
Probab=99.18 E-value=2.9e-10 Score=110.42 Aligned_cols=44 Identities=16% Similarity=0.083 Sum_probs=39.4
Q ss_pred CCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeechhh
Q 013178 245 RDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSIGV 288 (448)
Q Consensus 245 ~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~ 288 (448)
.|++|+.+++|++++.+++.+.|++++|+++++|.||.|...+.
T Consensus 124 ~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S 167 (392)
T PRK09126 124 DGIELLTGTRVTAVRTDDDGAQVTLANGRRLTARLLVAADSRFS 167 (392)
T ss_pred CCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCEEEEeCCCCc
Confidence 48999999999999988888889888898999999999998653
No 71
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.17 E-value=7.2e-10 Score=107.33 Aligned_cols=58 Identities=14% Similarity=0.155 Sum_probs=46.6
Q ss_pred HHHHHHHHHhhhcccccccCCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeechhh
Q 013178 226 ESVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSIGV 288 (448)
Q Consensus 226 ~~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~ 288 (448)
..+.+.|.+.+.+. .|++++.+++|++|+.+++++.|.+.+|.+++||.||.|...+.
T Consensus 105 ~~l~~~L~~~~~~~-----~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S 162 (382)
T TIGR01984 105 ADLGQALLSRLALL-----TNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAADGANS 162 (382)
T ss_pred HHHHHHHHHHHHhC-----CCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEecCCCh
Confidence 34556666665431 38899999999999988888999988888899999999998653
No 72
>PRK07190 hypothetical protein; Provisional
Probab=99.17 E-value=5.1e-10 Score=110.80 Aligned_cols=45 Identities=20% Similarity=0.215 Sum_probs=39.9
Q ss_pred CCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeechhhc
Q 013178 245 RDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSIGVL 289 (448)
Q Consensus 245 ~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~l 289 (448)
.|++|+.+++|++|+.+++++.+.+.+|++++|++||.|......
T Consensus 122 ~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgADG~~S~ 166 (487)
T PRK07190 122 AGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGADGSRSF 166 (487)
T ss_pred CCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEECCCCCHH
Confidence 589999999999999998888888888889999999999986543
No 73
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.16 E-value=6.3e-10 Score=114.90 Aligned_cols=56 Identities=7% Similarity=0.095 Sum_probs=46.2
Q ss_pred HHHHHHHHHhhhcccccccCCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeechhh
Q 013178 226 ESVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSIGV 288 (448)
Q Consensus 226 ~~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~ 288 (448)
..+..+|.+.+.+ |++|+.+++|++|+.+++++.|.+.+|..+++|+||+|+....
T Consensus 408 ~~l~~aL~~~a~~-------Gv~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~~s 463 (662)
T PRK01747 408 AELCRALLALAGQ-------QLTIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGHDA 463 (662)
T ss_pred HHHHHHHHHhccc-------CcEEEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCCCCc
Confidence 4677777777632 6899999999999998888889998887788999999998654
No 74
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.16 E-value=8.9e-10 Score=109.38 Aligned_cols=43 Identities=33% Similarity=0.524 Sum_probs=37.7
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCC--CCceE
Q 013178 24 SPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSR--VGGRL 67 (448)
Q Consensus 24 ~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~--~GGr~ 67 (448)
++.++||+|||||++||+||+.|++.|. +|+||||... .||..
T Consensus 1 ~~~~~DVvVVG~G~aGl~AA~~aa~~G~-~V~vlEk~~~~~~GG~s 45 (466)
T PRK08274 1 MASMVDVLVIGGGNAALCAALAAREAGA-SVLLLEAAPREWRGGNS 45 (466)
T ss_pred CCccCCEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCCCcCCCccc
Confidence 3567899999999999999999999999 7999999874 67643
No 75
>PRK06184 hypothetical protein; Provisional
Probab=99.16 E-value=6.6e-10 Score=111.24 Aligned_cols=60 Identities=22% Similarity=0.309 Sum_probs=47.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCC--ceEEEceeCCceeeecceeccCCCCCCCHHHHHHHHcCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVG--GRLHKGNIGGHTIELGANWVNSGGPKSSPSLQIAKKIKL 103 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~G--Gr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~l~~~lgl 103 (448)
+++||+|||||++||++|..|++.|+ +|+|||+++.+. ++... .+++..++++++|+
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~Gi-~v~viE~~~~~~~~~ra~~--------------------l~~~~~e~l~~lGl 60 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARRGV-SFRLIEKAPEPFPGSRGKG--------------------IQPRTQEVFDDLGV 60 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEeCCCCCCcCcccee--------------------ecHHHHHHHHHcCc
Confidence 36899999999999999999999999 799999986542 11111 23567788899998
Q ss_pred cee
Q 013178 104 KTF 106 (448)
Q Consensus 104 ~~~ 106 (448)
...
T Consensus 61 ~~~ 63 (502)
T PRK06184 61 LDR 63 (502)
T ss_pred HHH
Confidence 643
No 76
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.16 E-value=2e-09 Score=107.53 Aligned_cols=44 Identities=18% Similarity=0.409 Sum_probs=38.6
Q ss_pred CCCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceE
Q 013178 23 TSPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRL 67 (448)
Q Consensus 23 ~~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~ 67 (448)
.++.++||+|||||++|+++|++|++.|. +|+|||+++..+|..
T Consensus 2 ~~~~~~DVvIIGGGi~G~~~A~~la~rG~-~V~LlEk~d~~~GtS 45 (502)
T PRK13369 2 AEPETYDLFVIGGGINGAGIARDAAGRGL-KVLLCEKDDLAQGTS 45 (502)
T ss_pred CCCcccCEEEECCCHHHHHHHHHHHhCCC-cEEEEECCCCCCCCc
Confidence 45777999999999999999999999999 799999997655533
No 77
>PRK06753 hypothetical protein; Provisional
Probab=99.16 E-value=6.6e-10 Score=107.19 Aligned_cols=55 Identities=20% Similarity=0.241 Sum_probs=44.2
Q ss_pred HHHHHHHHhhhcccccccCCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeechhhc
Q 013178 227 SVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSIGVL 289 (448)
Q Consensus 227 ~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~l 289 (448)
.+.+.|.+.+ .+.+|+++++|++|+.+++++.|++++|+++++|.||-|-..+..
T Consensus 99 ~l~~~L~~~~--------~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S~ 153 (373)
T PRK06753 99 TLIDIIKSYV--------KEDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHSK 153 (373)
T ss_pred HHHHHHHHhC--------CCceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcchH
Confidence 3555555555 245799999999999888889999999989999999999876543
No 78
>PRK07045 putative monooxygenase; Reviewed
Probab=99.15 E-value=8.1e-10 Score=107.10 Aligned_cols=58 Identities=12% Similarity=0.166 Sum_probs=43.7
Q ss_pred HHHHHHHHhhhcccccccCCCceecCceeEEEEecCCc--EEEEeCCCcEEEeCEEEEeechhhc
Q 013178 227 SVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDK--VTVKTEDGSVYQANYAIVSVSIGVL 289 (448)
Q Consensus 227 ~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~--v~V~~~~g~~~~ad~VI~a~p~~~l 289 (448)
.+.+.|.+.+... .|++++++++|++|+.++++ +.|++++|+++++|.||.|-.....
T Consensus 107 ~l~~~L~~~~~~~-----~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S~ 166 (388)
T PRK07045 107 QLRRLLLAKLDGL-----PNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARSM 166 (388)
T ss_pred HHHHHHHHHHhcC-----CCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCChH
Confidence 3445555554321 47899999999999987655 4688888989999999999886643
No 79
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.15 E-value=6.6e-10 Score=108.59 Aligned_cols=39 Identities=33% Similarity=0.546 Sum_probs=35.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCc
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGG 65 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GG 65 (448)
.++||+|||||+||++||+.|+++|+ +|+|||+.+.+|.
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G~-~V~llEr~~~~g~ 42 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREGA-QVLVIERGNSAGA 42 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCCC-eEEEEEcCCCCCC
Confidence 46999999999999999999999999 7999999877765
No 80
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.14 E-value=1.2e-09 Score=106.07 Aligned_cols=54 Identities=11% Similarity=0.095 Sum_probs=43.1
Q ss_pred HHHHHHHHhhhcccccccCC-CceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeechh
Q 013178 227 SVVHSVAKQFLSHRHQVIRD-PRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSIG 287 (448)
Q Consensus 227 ~l~~~l~~~l~~~~~~~~~g-~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~ 287 (448)
.+.+.|.+.+.+ .| ++++ ++.|++|+.+++++.|++.+|.+++||.||.|....
T Consensus 112 ~l~~~L~~~~~~------~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~adG~~ 166 (388)
T PRK07608 112 LIERALWAALRF------QPNLTWF-PARAQGLEVDPDAATLTLADGQVLRADLVVGADGAH 166 (388)
T ss_pred HHHHHHHHHHHh------CCCcEEE-cceeEEEEecCCeEEEEECCCCEEEeeEEEEeCCCC
Confidence 355556555544 34 7888 999999998888899999888889999999998864
No 81
>PRK08013 oxidoreductase; Provisional
Probab=99.14 E-value=1.2e-09 Score=106.20 Aligned_cols=57 Identities=11% Similarity=0.164 Sum_probs=45.2
Q ss_pred HHHHHHHhhhcccccccCCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeechhhc
Q 013178 228 VVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSIGVL 289 (448)
Q Consensus 228 l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~l 289 (448)
+-..|.+.+.+. .|++++.+++|++|+.+++.+.|+..+|++++||.||-|-..+..
T Consensus 113 l~~~L~~~~~~~-----~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~~S~ 169 (400)
T PRK08013 113 IHYALWQKAQQS-----SDITLLAPAELQQVAWGENEAFLTLKDGSMLTARLVVGADGANSW 169 (400)
T ss_pred HHHHHHHHHhcC-----CCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeEEEEeCCCCcH
Confidence 444555554331 378999999999999988889999889989999999999886643
No 82
>PRK06834 hypothetical protein; Provisional
Probab=99.14 E-value=8.6e-10 Score=109.35 Aligned_cols=55 Identities=15% Similarity=0.108 Sum_probs=44.7
Q ss_pred HHHHHHHhhhcccccccCCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeechhh
Q 013178 228 VVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSIGV 288 (448)
Q Consensus 228 l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~ 288 (448)
+-..|.+.+.+ .|++|+.+++|++|+.++++|.|++.+|.++++|+||.|.....
T Consensus 102 le~~L~~~l~~------~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S 156 (488)
T PRK06834 102 IERILAEWVGE------LGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRS 156 (488)
T ss_pred HHHHHHHHHHh------CCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCC
Confidence 44445555544 48999999999999999889999888888899999999987654
No 83
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.13 E-value=1.8e-09 Score=104.39 Aligned_cols=45 Identities=16% Similarity=0.208 Sum_probs=40.6
Q ss_pred CCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeechhhc
Q 013178 245 RDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSIGVL 289 (448)
Q Consensus 245 ~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~l 289 (448)
.+++|+.+++|++++.+++++.|++++|.++++|.||.|...+..
T Consensus 124 ~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lvIgADG~~S~ 168 (384)
T PRK08849 124 PNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWVIGADGANSQ 168 (384)
T ss_pred CCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEEEEecCCCch
Confidence 478999999999999998889999999999999999999987644
No 84
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.13 E-value=7.2e-10 Score=107.40 Aligned_cols=43 Identities=40% Similarity=0.555 Sum_probs=39.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEE
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHK 69 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s 69 (448)
+++||+|||||+||++||+.|+++|. +|+|||+++.+|-...+
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~-~VlvlEk~~~~G~k~~~ 44 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGL-DVLVLEKGSEPGAKPCC 44 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCC-eEEEEecCCCCCCCccc
Confidence 57999999999999999999999999 89999999988875444
No 85
>PRK08244 hypothetical protein; Provisional
Probab=99.13 E-value=1.1e-09 Score=109.44 Aligned_cols=58 Identities=26% Similarity=0.301 Sum_probs=45.6
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCC--CceEEEceeCCceeeecceeccCCCCCCCHHHHHHHHcCCc
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRV--GGRLHKGNIGGHTIELGANWVNSGGPKSSPSLQIAKKIKLK 104 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~--GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~l~~~lgl~ 104 (448)
++||+|||||++||++|..|++.|+ +|+|+|+.... .|+..+ .+.+..++++++|+.
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~-~v~viEr~~~~~~~~ra~~--------------------l~~~~~e~l~~lGl~ 60 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGV-KTCVIERLKETVPYSKALT--------------------LHPRTLEILDMRGLL 60 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCC-cEEEEecCCCCCCCcceeE--------------------ecHHHHHHHHhcCcH
Confidence 5899999999999999999999999 79999997543 121111 345677888998875
Q ss_pred e
Q 013178 105 T 105 (448)
Q Consensus 105 ~ 105 (448)
.
T Consensus 61 ~ 61 (493)
T PRK08244 61 E 61 (493)
T ss_pred H
Confidence 4
No 86
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.13 E-value=1.4e-09 Score=106.04 Aligned_cols=44 Identities=9% Similarity=0.156 Sum_probs=39.5
Q ss_pred CCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeechhh
Q 013178 245 RDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSIGV 288 (448)
Q Consensus 245 ~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~ 288 (448)
.|++|+++++|++|+.+++.+.|++.+|++++||.||.|-..+.
T Consensus 125 ~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvIgADG~~S 168 (405)
T PRK08850 125 DNVTLLMPARCQSIAVGESEAWLTLDNGQALTAKLVVGADGANS 168 (405)
T ss_pred CCeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEEEeCCCCC
Confidence 47899999999999998888999999998999999999998654
No 87
>PRK05868 hypothetical protein; Validated
Probab=99.13 E-value=1.2e-09 Score=104.94 Aligned_cols=45 Identities=11% Similarity=0.104 Sum_probs=39.8
Q ss_pred CCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeechhhc
Q 013178 245 RDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSIGVL 289 (448)
Q Consensus 245 ~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~l 289 (448)
.|++++++++|++|+.++++|.|++++|++++||.||-|=..+..
T Consensus 117 ~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG~~S~ 161 (372)
T PRK05868 117 PSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGLHSN 161 (372)
T ss_pred CCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCCCCch
Confidence 478999999999999888889999999989999999999876543
No 88
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.11 E-value=1.5e-09 Score=95.12 Aligned_cols=42 Identities=21% Similarity=0.307 Sum_probs=33.0
Q ss_pred CCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeech
Q 013178 245 RDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSI 286 (448)
Q Consensus 245 ~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~ 286 (448)
.+.+|+++++|++|++.++++.|++.++++++||+||+|+..
T Consensus 95 ~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~ 136 (203)
T PF13738_consen 95 FGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGH 136 (203)
T ss_dssp TTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---S
T ss_pred cCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeec
Confidence 367799999999999999999999999989999999999983
No 89
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.11 E-value=1.7e-09 Score=105.21 Aligned_cols=43 Identities=16% Similarity=0.204 Sum_probs=38.7
Q ss_pred CCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeechh
Q 013178 245 RDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSIG 287 (448)
Q Consensus 245 ~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~ 287 (448)
.|++++.+++|++|..+++++.|.+++|.++++|.||.|....
T Consensus 126 ~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~ 168 (395)
T PRK05732 126 PGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVAADGSH 168 (395)
T ss_pred CCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCC
Confidence 4789999999999998888899999888889999999998754
No 90
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.10 E-value=2.3e-09 Score=103.29 Aligned_cols=58 Identities=12% Similarity=0.068 Sum_probs=45.5
Q ss_pred HHHHHHHHHhhhcccccccCCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeechhhc
Q 013178 226 ESVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSIGVL 289 (448)
Q Consensus 226 ~~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~l 289 (448)
..|...|.+.+.+. .+++++.+++|++|..+++++.|.++++ +++||.||.|-..+..
T Consensus 104 ~~L~~~L~~~~~~~-----~~v~~~~~~~v~~i~~~~~~v~v~~~~~-~~~adlvIgADG~~S~ 161 (374)
T PRK06617 104 SDFKKILLSKITNN-----PLITLIDNNQYQEVISHNDYSIIKFDDK-QIKCNLLIICDGANSK 161 (374)
T ss_pred HHHHHHHHHHHhcC-----CCcEEECCCeEEEEEEcCCeEEEEEcCC-EEeeCEEEEeCCCCch
Confidence 44566666665442 3578999999999999888899988777 9999999999876643
No 91
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.10 E-value=1.6e-09 Score=108.15 Aligned_cols=41 Identities=37% Similarity=0.555 Sum_probs=38.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceE
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRL 67 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~ 67 (448)
.++||+|||||++||+||+.+++.|. +|+||||...+||..
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga-~VivlEK~~~~GG~s 100 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDAGM-NPVILEKMPVAGGNT 100 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCCCCCCcc
Confidence 46899999999999999999999999 799999999999854
No 92
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.09 E-value=3.1e-09 Score=103.19 Aligned_cols=56 Identities=14% Similarity=0.163 Sum_probs=44.2
Q ss_pred HHHHHHHhhhcccccccCCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeechhh
Q 013178 228 VVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSIGV 288 (448)
Q Consensus 228 l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~ 288 (448)
+.+.|.+.+.+. .|++++.+++|++++.+++++.|.+.+|.+++||.||.|.....
T Consensus 114 l~~~L~~~~~~~-----~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S 169 (391)
T PRK08020 114 LQLALWQALEAH-----PNVTLRCPASLQALQRDDDGWELTLADGEEIQAKLVIGADGANS 169 (391)
T ss_pred HHHHHHHHHHcC-----CCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeCEEEEeCCCCc
Confidence 444455544331 38899999999999988888889888888999999999998654
No 93
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.08 E-value=6.4e-09 Score=101.91 Aligned_cols=56 Identities=21% Similarity=0.324 Sum_probs=42.5
Q ss_pred chHHHHHHHHHhhhcccccccCCCceecCceeEEEEecCCcEE-EEe---CCCc--EEEeCEEEEeec
Q 013178 224 GFESVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVT-VKT---EDGS--VYQANYAIVSVS 285 (448)
Q Consensus 224 G~~~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~-V~~---~~g~--~~~ad~VI~a~p 285 (448)
+...++..|.+.+++ .|++|+++++|+++..++++|. |.. .+|+ ++.|+.||+|+.
T Consensus 139 ~g~~~~~~l~~~~~~------~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtG 200 (417)
T PF00890_consen 139 GGKALIEALAKAAEE------AGVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATG 200 (417)
T ss_dssp HHHHHHHHHHHHHHH------TTEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE---
T ss_pred cHHHHHHHHHHHHhh------cCeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccC
Confidence 566788888888877 6899999999999999888754 333 3454 578999999985
No 94
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.08 E-value=3.9e-09 Score=106.83 Aligned_cols=66 Identities=23% Similarity=0.356 Sum_probs=50.9
Q ss_pred CCCCCCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCC--ceEEEceeCCceeeecceeccCCCCCCCHHHHH
Q 013178 20 IAPTSPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVG--GRLHKGNIGGHTIELGANWVNSGGPKSSPSLQI 97 (448)
Q Consensus 20 ~~~~~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~G--Gr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~l 97 (448)
.+|..+.++||+|||||++||++|..|++.|+ +|+|+|+++.+. +|... ...+..++
T Consensus 16 ~~~~~~~~~dVlIVGaGpaGl~lA~~L~~~G~-~v~viE~~~~~~~~~ra~~--------------------l~~~~~~~ 74 (547)
T PRK08132 16 QDADDPARHPVVVVGAGPVGLALAIDLAQQGV-PVVLLDDDDTLSTGSRAIC--------------------FAKRSLEI 74 (547)
T ss_pred ccCCCCCcCCEEEECCCHHHHHHHHHHHhCCC-cEEEEeCCCCCCCCCeEEE--------------------EcHHHHHH
Confidence 34566688999999999999999999999999 799999987542 22222 23456788
Q ss_pred HHHcCCcee
Q 013178 98 AKKIKLKTF 106 (448)
Q Consensus 98 ~~~lgl~~~ 106 (448)
++++|+...
T Consensus 75 l~~lGl~~~ 83 (547)
T PRK08132 75 FDRLGCGER 83 (547)
T ss_pred HHHcCCcHH
Confidence 888887643
No 95
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.07 E-value=4.1e-09 Score=106.01 Aligned_cols=40 Identities=28% Similarity=0.428 Sum_probs=35.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCc
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGG 65 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GG 65 (448)
+..+||+|||||++|+++|++|++.|. +|+|||+++..+|
T Consensus 4 ~~~~DVvIIGGGi~G~~iA~~La~rG~-~V~LlEk~d~~~G 43 (546)
T PRK11101 4 SQETDVIIIGGGATGAGIARDCALRGL-RCILVERHDIATG 43 (546)
T ss_pred CccccEEEECcCHHHHHHHHHHHHcCC-eEEEEECCCCCCC
Confidence 346999999999999999999999999 7999999765444
No 96
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.06 E-value=4.8e-11 Score=100.72 Aligned_cols=70 Identities=26% Similarity=0.292 Sum_probs=46.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEEceeCCceeeecceeccCCCCCCCHHHHHHHHcCCce
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNIGGHTIELGANWVNSGGPKSSPSLQIAKKIKLKT 105 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~l~~~lgl~~ 105 (448)
.++||+|||||+|||+||++|++.|+ +|+|||++..+||..+. |++.|+.. .-+.+...+++++|++.
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~-kV~v~E~~~~~GGg~~~----------Gg~lf~~i-VVq~~a~~iL~elgi~y 83 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGL-KVAVIERKLSPGGGMWG----------GGMLFNKI-VVQEEADEILDELGIPY 83 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS--EEEEESSSS-BTTTTS-----------CTT---E-EEETTTHHHHHHHT---
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCC-eEEEEecCCCCCccccc----------cccccchh-hhhhhHHHHHHhCCcee
Confidence 46899999999999999999999999 79999999999885443 33333221 12344668899999975
Q ss_pred ee
Q 013178 106 FY 107 (448)
Q Consensus 106 ~~ 107 (448)
..
T Consensus 84 ~~ 85 (230)
T PF01946_consen 84 EE 85 (230)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 97
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=99.05 E-value=1.8e-09 Score=104.54 Aligned_cols=56 Identities=18% Similarity=0.265 Sum_probs=46.3
Q ss_pred chHHHHHHHHHhhhcccccccCCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeech
Q 013178 224 GFESVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSI 286 (448)
Q Consensus 224 G~~~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~ 286 (448)
....+.+.|.+.+.+ .|++|+++++|++|+.+++.+.|.+ +++++.+|+||+|+..
T Consensus 103 ~a~~v~~~L~~~l~~------~gv~i~~~~~V~~i~~~~~~~~v~~-~~~~i~ad~VIlAtG~ 158 (400)
T TIGR00275 103 SAADVLDALLNELKE------LGVEILTNSKVKSIKKDDNGFGVET-SGGEYEADKVILATGG 158 (400)
T ss_pred CHHHHHHHHHHHHHH------CCCEEEeCCEEEEEEecCCeEEEEE-CCcEEEcCEEEECCCC
Confidence 356678888887765 5899999999999988777777877 4558999999999985
No 98
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.05 E-value=3.9e-09 Score=98.28 Aligned_cols=37 Identities=35% Similarity=0.448 Sum_probs=33.9
Q ss_pred CcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCc
Q 013178 28 NSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGG 65 (448)
Q Consensus 28 ~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GG 65 (448)
+||+|||||++||++|+.|++.|. +|+|+|++...+.
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~-~v~vie~~~~~~~ 37 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGL-RVLLLEKKSFPRY 37 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCCCCc
Confidence 699999999999999999999999 8999999876643
No 99
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.05 E-value=4e-09 Score=106.47 Aligned_cols=63 Identities=24% Similarity=0.290 Sum_probs=47.8
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEEceeCCceeeecceeccCCCCCCCHHHHHHHHcCCc
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNIGGHTIELGANWVNSGGPKSSPSLQIAKKIKLK 104 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~l~~~lgl~ 104 (448)
..++||+|||||++||++|..|++.|+ +|+|||++..++...+.. . ......+.++++|+.
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~-~v~v~Er~~~~~~~~ra~---------------~---l~~~~~~~L~~lGl~ 68 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGV-RVLVLERWPTLYDLPRAV---------------G---IDDEALRVLQAIGLA 68 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCC-cEEEEecCCCCCCCCcee---------------e---eCHHHHHHHHHcCCh
Confidence 567999999999999999999999999 799999987553211110 1 234567788888876
Q ss_pred ee
Q 013178 105 TF 106 (448)
Q Consensus 105 ~~ 106 (448)
..
T Consensus 69 ~~ 70 (538)
T PRK06183 69 DE 70 (538)
T ss_pred hH
Confidence 43
No 100
>PRK10015 oxidoreductase; Provisional
Probab=99.04 E-value=5e-09 Score=102.35 Aligned_cols=38 Identities=34% Similarity=0.614 Sum_probs=35.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVG 64 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~G 64 (448)
.++||||||||+||++||+.|+++|. +|+|||+.+.+|
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G~-~VlliEr~~~~g 41 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGL-DVLVIERGDSAG 41 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCCC-eEEEEecCCCCC
Confidence 46999999999999999999999999 799999987654
No 101
>PLN02463 lycopene beta cyclase
Probab=99.04 E-value=4e-09 Score=102.75 Aligned_cols=53 Identities=13% Similarity=0.240 Sum_probs=42.3
Q ss_pred HHHHHHHhhhcccccccCCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeechh
Q 013178 228 VVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSIG 287 (448)
Q Consensus 228 l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~ 287 (448)
+-+.|.+.+.+ .|++++ +++|++|+..++++.|++++|.+++||.||.|...+
T Consensus 116 L~~~Ll~~~~~------~GV~~~-~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~ 168 (447)
T PLN02463 116 LKSKMLERCIA------NGVQFH-QAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFS 168 (447)
T ss_pred HHHHHHHHHhh------cCCEEE-eeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCC
Confidence 44555555543 478885 679999999988899999999899999999999754
No 102
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.04 E-value=2e-08 Score=102.36 Aligned_cols=41 Identities=22% Similarity=0.302 Sum_probs=36.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCce
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGR 66 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr 66 (448)
..++||+|||||+.|+++|++|++.|. +|+|+|+++..+|-
T Consensus 69 ~~~~DVvVIGGGi~Ga~~A~~lA~rGl-~V~LvE~~d~a~Gt 109 (627)
T PLN02464 69 AEPLDVLVVGGGATGAGVALDAATRGL-RVGLVEREDFSSGT 109 (627)
T ss_pred CCccCEEEECCCHHHHHHHHHHHhCCC-EEEEEeccccCCCc
Confidence 345999999999999999999999999 79999999766663
No 103
>PLN02661 Putative thiazole synthesis
Probab=99.03 E-value=5.8e-09 Score=96.39 Aligned_cols=42 Identities=33% Similarity=0.499 Sum_probs=37.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHHc-CCCcEEEEecCCCCCceEE
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEA-GYKDFIILEASSRVGGRLH 68 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~-G~~~V~vlE~~~~~GGr~~ 68 (448)
.++||+|||||++||+||+.|++. |. +|+|+|++..+||..+
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~~g~-kV~viEk~~~~GGG~~ 133 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKNPNV-KVAIIEQSVSPGGGAW 133 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHcCCC-eEEEEecCccccccee
Confidence 468999999999999999999986 88 7999999999988444
No 104
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=99.02 E-value=4.2e-09 Score=102.98 Aligned_cols=56 Identities=18% Similarity=0.238 Sum_probs=45.6
Q ss_pred HHHHHHHHHhhhcccccccCCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeechhhc
Q 013178 226 ESVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSIGVL 289 (448)
Q Consensus 226 ~~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~l 289 (448)
..+.+.|.+.+. +..++++++|++|+.+++++.|.+++|+++++|.||.|-..+..
T Consensus 105 ~~l~~~L~~~~~--------~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~ 160 (414)
T TIGR03219 105 ADFLDALLKHLP--------EGIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGIKSA 160 (414)
T ss_pred HHHHHHHHHhCC--------CceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCccHH
Confidence 346667777652 45689999999999988889999999989999999999876543
No 105
>PRK06475 salicylate hydroxylase; Provisional
Probab=99.02 E-value=6.5e-09 Score=101.14 Aligned_cols=60 Identities=10% Similarity=0.114 Sum_probs=43.5
Q ss_pred HHHHHHHHhhhcccccccCCCceecCceeEEEEecCCcEEEEe---CCCcEEEeCEEEEeechhhccC
Q 013178 227 SVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVTVKT---EDGSVYQANYAIVSVSIGVLQS 291 (448)
Q Consensus 227 ~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~---~~g~~~~ad~VI~a~p~~~l~~ 291 (448)
.|.+.|.+.+.+. .+++++++++|++++.+++++.|++ .+++++++|.||-|=..+..-+
T Consensus 108 ~l~~~L~~~~~~~-----~~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~~~~~adlvIgADG~~S~vR 170 (400)
T PRK06475 108 DLQSALLDACRNN-----PGIEIKLGAEMTSQRQTGNSITATIIRTNSVETVSAAYLIACDGVWSMLR 170 (400)
T ss_pred HHHHHHHHHHHhc-----CCcEEEECCEEEEEecCCCceEEEEEeCCCCcEEecCEEEECCCccHhHH
Confidence 3555555555321 4789999999999998888887765 3345799999999987765433
No 106
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=99.02 E-value=6.7e-09 Score=100.74 Aligned_cols=62 Identities=27% Similarity=0.449 Sum_probs=46.5
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCC--CceEEEceeCCceeeecceeccCCCCCCCHHHHHHHHcCCc
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRV--GGRLHKGNIGGHTIELGANWVNSGGPKSSPSLQIAKKIKLK 104 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~--GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~l~~~lgl~ 104 (448)
++||+|||||++||++|..|++.|+ +|+|+|+++.. .+. .++..+ .++..++++++|+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~-~v~v~E~~~~~~~~~~------------~~a~~l------~~~~~~~l~~lGl~ 62 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGI-DSVVLERRSREYVEGR------------IRAGVL------EQGTVDLLREAGVG 62 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCC-CEEEEEcCCccccccc------------cceeEE------CHhHHHHHHHcCCh
Confidence 6899999999999999999999999 79999998742 111 112222 23567888999986
Q ss_pred eee
Q 013178 105 TFY 107 (448)
Q Consensus 105 ~~~ 107 (448)
...
T Consensus 63 ~~l 65 (392)
T PRK08243 63 ERM 65 (392)
T ss_pred HHH
Confidence 443
No 107
>PRK06185 hypothetical protein; Provisional
Probab=99.02 E-value=6.2e-09 Score=101.67 Aligned_cols=39 Identities=31% Similarity=0.457 Sum_probs=35.6
Q ss_pred CCCCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 22 PTSPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 22 ~~~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
|.+.+++||+|||||++||++|..|+++|+ +|+|+|++.
T Consensus 1 ~~~~~~~dV~IvGgG~~Gl~~A~~La~~G~-~v~liE~~~ 39 (407)
T PRK06185 1 MAEVETTDCCIVGGGPAGMMLGLLLARAGV-DVTVLEKHA 39 (407)
T ss_pred CCccccccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Confidence 445678999999999999999999999999 799999975
No 108
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.01 E-value=3.7e-09 Score=102.54 Aligned_cols=55 Identities=13% Similarity=0.119 Sum_probs=43.5
Q ss_pred HHHHHHHHHhhhcccccccCC-CceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeechh
Q 013178 226 ESVVHSVAKQFLSHRHQVIRD-PRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSIG 287 (448)
Q Consensus 226 ~~l~~~l~~~l~~~~~~~~~g-~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~ 287 (448)
..++..+++.+.+ .| ..+..+++|+.++..++.+.|.|.+| +++||+||+|+...
T Consensus 156 ~~~~~~l~~~~~~------~G~~~~~~~~~~~~~~~~~~~~~v~t~~g-~i~a~~vv~a~G~~ 211 (387)
T COG0665 156 RLLTRALAAAAEE------LGVVIIEGGTPVTSLERDGRVVGVETDGG-TIEADKVVLAAGAW 211 (387)
T ss_pred HHHHHHHHHHHHh------cCCeEEEccceEEEEEecCcEEEEEeCCc-cEEeCEEEEcCchH
Confidence 5677778777765 46 67777999999998644477999999 59999999999744
No 109
>PRK07538 hypothetical protein; Provisional
Probab=99.00 E-value=7.1e-09 Score=101.30 Aligned_cols=60 Identities=23% Similarity=0.383 Sum_probs=44.3
Q ss_pred CcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEEceeCCceeeecceeccCCCCCCCHHHHHHHHcCCcee
Q 013178 28 NSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNIGGHTIELGANWVNSGGPKSSPSLQIAKKIKLKTF 106 (448)
Q Consensus 28 ~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~l~~~lgl~~~ 106 (448)
+||+|||||++||++|..|+++|+ +|+|+|++..++- .|.... ..++..+.++++|+...
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~-~v~v~E~~~~~~~-------------~g~gi~-----l~p~~~~~L~~lgl~~~ 60 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGI-EVVVFEAAPELRP-------------LGVGIN-----LLPHAVRELAELGLLDA 60 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCC-cEEEEEcCCcccc-------------cCccee-----eCchHHHHHHHCCCHHH
Confidence 489999999999999999999999 7999999864420 111111 23456777888887543
No 110
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.99 E-value=2.8e-09 Score=95.16 Aligned_cols=43 Identities=28% Similarity=0.388 Sum_probs=37.1
Q ss_pred CCCceecCceeEEEEec---CCcEEEEeCCCcEEEeCEEEEeechh
Q 013178 245 RDPRLKLNKVVRNISYS---KDKVTVKTEDGSVYQANYAIVSVSIG 287 (448)
Q Consensus 245 ~g~~i~~~~~V~~I~~~---~~~v~V~~~~g~~~~ad~VI~a~p~~ 287 (448)
.|+.++.+.+|+.++.. +..|.|.|.+|..+.|+.+|+|+.+=
T Consensus 166 ~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaW 211 (399)
T KOG2820|consen 166 LGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAW 211 (399)
T ss_pred cCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHH
Confidence 59999999999999854 34588999999889999999999753
No 111
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.99 E-value=3.5e-08 Score=95.90 Aligned_cols=43 Identities=21% Similarity=0.397 Sum_probs=39.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEE
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHK 69 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s 69 (448)
..+||+|||||++|+-+|+.++-+|+ +|+|+|++|.-.|....
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~RGl-~v~LvE~~D~AsGTSsr 53 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAGRGL-KVALVEKGDLASGTSSR 53 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHhCCC-eEEEEecCcccCcccCc
Confidence 89999999999999999999999999 79999999988886543
No 112
>PRK06126 hypothetical protein; Provisional
Probab=98.99 E-value=8.5e-09 Score=104.47 Aligned_cols=66 Identities=23% Similarity=0.291 Sum_probs=48.2
Q ss_pred CCCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEEceeCCceeeecceeccCCCCCCCHHHHHHHHcC
Q 013178 23 TSPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNIGGHTIELGANWVNSGGPKSSPSLQIAKKIK 102 (448)
Q Consensus 23 ~~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~l~~~lg 102 (448)
..+..+||+|||||++||++|..|++.|+ +|+|+|++....- .+ .. .. ...+..++++++|
T Consensus 3 ~~~~~~~VlIVGaGpaGL~~Al~La~~G~-~v~viEr~~~~~~-------------~~-ra-~~---l~~r~~e~L~~lG 63 (545)
T PRK06126 3 ENTSETPVLIVGGGPVGLALALDLGRRGV-DSILVERKDGTAF-------------NP-KA-NT---TSARSMEHFRRLG 63 (545)
T ss_pred CCCccCCEEEECCCHHHHHHHHHHHHCCC-cEEEEeCCCCCCC-------------CC-cc-cc---CCHHHHHHHHhcC
Confidence 34567999999999999999999999999 7999998753210 00 00 11 3455678888888
Q ss_pred Cceee
Q 013178 103 LKTFY 107 (448)
Q Consensus 103 l~~~~ 107 (448)
+....
T Consensus 64 l~~~l 68 (545)
T PRK06126 64 IADEV 68 (545)
T ss_pred hHHHH
Confidence 76543
No 113
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.98 E-value=9.5e-09 Score=99.43 Aligned_cols=62 Identities=29% Similarity=0.444 Sum_probs=46.3
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCC--CceEEEceeCCceeeecceeccCCCCCCCHHHHHHHHcCCc
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRV--GGRLHKGNIGGHTIELGANWVNSGGPKSSPSLQIAKKIKLK 104 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~--GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~l~~~lgl~ 104 (448)
.+||+|||||++||++|..|+++|+ +|+|+|+.+.. .+ +.|+..+ ..+..++++++|+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~-~v~viE~~~~~~~~~------------~~~a~~l------~~~~~~~L~~lGl~ 62 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGI-DNVILERQSRDYVLG------------RIRAGVL------EQGTVDLLREAGVD 62 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCC-CEEEEECCCCcccCC------------ceeEeeE------CHHHHHHHHHCCCh
Confidence 5899999999999999999999999 79999998741 11 1122222 23467888999976
Q ss_pred eee
Q 013178 105 TFY 107 (448)
Q Consensus 105 ~~~ 107 (448)
...
T Consensus 63 ~~l 65 (390)
T TIGR02360 63 ERM 65 (390)
T ss_pred HHH
Confidence 443
No 114
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.98 E-value=6e-09 Score=102.68 Aligned_cols=38 Identities=34% Similarity=0.674 Sum_probs=35.8
Q ss_pred cEEEECCChHHHHHHHHHHHcC-CCcEEEEecCCCCCceE
Q 013178 29 SVIIVGAGMSGFMAAKTLEEAG-YKDFIILEASSRVGGRL 67 (448)
Q Consensus 29 dViIIGaGiaGL~aA~~L~~~G-~~~V~vlE~~~~~GGr~ 67 (448)
||+|||||++||+||+.++++| . +|+||||.+..||.+
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~-~V~vlEk~~~~gg~s 39 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAA-NVVLLEKMPVIGGNS 39 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCc-cEEEEecCCCCCCcc
Confidence 8999999999999999999999 9 799999999988854
No 115
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.97 E-value=1.3e-08 Score=101.00 Aligned_cols=45 Identities=22% Similarity=0.324 Sum_probs=41.0
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEEc
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKG 70 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~ 70 (448)
..+|||+|||||++|++||+.|++.|+ +|+|+|+++.+||.|...
T Consensus 3 ~~~yDvvVIGaGpaG~~aA~~la~~G~-~v~liE~~~~~GG~~~~~ 47 (461)
T PRK05249 3 MYDYDLVVIGSGPAGEGAAMQAAKLGK-RVAVIERYRNVGGGCTHT 47 (461)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCC-EEEEEecccccccccccc
Confidence 356999999999999999999999999 899999988999988654
No 116
>PRK09897 hypothetical protein; Provisional
Probab=98.97 E-value=1.4e-08 Score=100.45 Aligned_cols=44 Identities=25% Similarity=0.345 Sum_probs=37.0
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCC-cEEEEecCCCCC-ceEEEc
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYK-DFIILEASSRVG-GRLHKG 70 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~-~V~vlE~~~~~G-Gr~~s~ 70 (448)
+++|+|||||.+|+++|.+|.+.+.. +|+|||++..+| |.+++.
T Consensus 1 m~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~ 46 (534)
T PRK09897 1 MKKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSD 46 (534)
T ss_pred CCeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecC
Confidence 35899999999999999999986532 799999998888 666553
No 117
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.97 E-value=2.9e-07 Score=88.42 Aligned_cols=54 Identities=19% Similarity=0.179 Sum_probs=43.9
Q ss_pred HHHHHHHHhhhcccccccCCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeechh
Q 013178 227 SVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSIG 287 (448)
Q Consensus 227 ~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~ 287 (448)
.+-+.+.+.+.+ ++.+++++.|++|+.+++.+.|.+.+|++++|+.||-|.++.
T Consensus 88 ~f~~~l~~~~~~-------~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~ 141 (374)
T PF05834_consen 88 DFYEFLLERAAA-------GGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPS 141 (374)
T ss_pred HHHHHHHHHhhh-------CCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcc
Confidence 344555565542 457889999999999999889999999999999999999854
No 118
>PRK07121 hypothetical protein; Validated
Probab=98.95 E-value=1.8e-08 Score=100.65 Aligned_cols=42 Identities=31% Similarity=0.479 Sum_probs=38.8
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceE
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRL 67 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~ 67 (448)
...+||+|||||++||+||..++++|. +|+||||....||..
T Consensus 18 ~~~~DVvVVGaG~AGl~AA~~aae~G~-~VillEK~~~~gG~s 59 (492)
T PRK07121 18 DDEADVVVVGFGAAGACAAIEAAAAGA-RVLVLERAAGAGGAT 59 (492)
T ss_pred CCccCEEEECcCHHHHHHHHHHHHCCC-eEEEEeCCCCCCCcc
Confidence 457999999999999999999999999 799999999888854
No 119
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=98.95 E-value=2.1e-08 Score=96.07 Aligned_cols=241 Identities=17% Similarity=0.211 Sum_probs=127.0
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEEceeC---------------------Cceeeecce
Q 013178 24 SPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNIG---------------------GHTIELGAN 82 (448)
Q Consensus 24 ~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~~~~---------------------g~~~d~G~~ 82 (448)
|+.+|||||+|-|+.-...|..|++.|+ +|+.+|+++.-||...|..+. .+.+|+-+.
T Consensus 1 m~~~yDviI~GTGl~esila~als~~Gk-kVLhiD~n~yYGg~~asl~l~~l~~~~~~~~~~~~~~~~~sR~ynIDL~PK 79 (438)
T PF00996_consen 1 MDEEYDVIILGTGLTESILAAALSRSGK-KVLHIDRNDYYGGEWASLNLDQLYEWFRPKQWTPPESLGRSRDYNIDLIPK 79 (438)
T ss_dssp --SBESEEEE--SHHHHHHHHHHHHTT---EEEE-SSSSSCGGG-EE-HHHHHHHHCCTCCHHHHHHHTGGGC-EESS--
T ss_pred CCccceEEEECCCcHHHHHHHHHHhcCC-EEEecCCCCCcCCchhcccHHHHHHHhhccccccccccccccceeEecchH
Confidence 4678999999999999999999999999 799999999999999886421 377788888
Q ss_pred eccCCCCCCCHHHHHHHHcCCceeecccccccceEEecCCccccHH--HHHH----HHHHH--HHhHHHHHHHhhhc---
Q 013178 83 WVNSGGPKSSPSLQIAKKIKLKTFYSDYANLTSNIYKQDGGLYQKH--VVES----AVRIA--KTRDAFCTNLSKML--- 151 (448)
Q Consensus 83 ~~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~----~~~~~--~~~~~~~~~~~~~~--- 151 (448)
.+.. ...+.+++-+-++..+.+...-....+|. +++....+ ..+. .+... +.+.+|+......-
T Consensus 80 ll~a----~g~LV~lLi~S~V~rYLEFk~V~~~~v~~-~~~l~kVP~sr~dvf~s~~lsl~eKR~lmkFl~~v~~~~~~~ 154 (438)
T PF00996_consen 80 LLYA----RGPLVKLLISSGVTRYLEFKAVDGSYVYK-NGKLHKVPCSREDVFKSKLLSLFEKRRLMKFLKFVANYEEDD 154 (438)
T ss_dssp BEET----TSHHHHHHHHCTGGGGSEEEEESEEEEEE-TTEEEE--SSHHHHHC-TTS-HHHHHHHHHHHHHHHHGCTTB
T ss_pred hhhc----cCHHHHHHHhCCcccceEEEEcceeEEEe-CCEEeeCCCCHHHhhcCCCccHHHHHHHHHHHHHHhhcccCC
Confidence 8875 57889999999988776654433344554 66654311 1110 11111 11222222222111
Q ss_pred cCC--CCCCCcccHHHHHHhhcCCCCChHHHHHHHHhhccccCCCccc--ccccccCCC-----cccccCCCCeeeeeCC
Q 013178 152 SSE--TTRDDDTSILGSQRLLKEVPMTPLEMAIDYFFNDYEDAEPPRI--TSLKTTYPR-----NQLVDFGEDSYFVADP 222 (448)
Q Consensus 152 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~s~~~~~~~-----~~~~~~~~~~~~~~~~ 222 (448)
... .....+..+.+...-. ...+.+.+++........+... .++...+.+ ..+..+|.. .++.+.
T Consensus 155 ~~~~~~~~~~~~~~~e~~~~f-----~L~~~~~~~i~haiaL~~~~~~~~~p~~~~l~ri~~yl~SlgryG~s-PfLyP~ 228 (438)
T PF00996_consen 155 PSTHKGLDPEKKTFQELLKKF-----GLSENLIDFIGHAIALSLDDSYLTEPAREGLERIKLYLSSLGRYGKS-PFLYPL 228 (438)
T ss_dssp GGGSTTG-TTTSBHHHHHHHT-----TS-HHHHHHHHHHTS-SSSSGGGGSBSHHHHHHHHHHHHHHCCCSSS-SEEEET
T ss_pred cchhhccccccccHHHHHHhc-----CCCHHHHHHHHHhhhhccCcccccccHHHHHHHHHHHHHHHhccCCC-CEEEEc
Confidence 100 0000122333322111 1122333333322222221110 111111111 122345555 455566
Q ss_pred CchHHHHHHHHHhhhcccccccCCCceecCceeEEEEecC-CcEE-EEeCCCcEEEeCEEEEe
Q 013178 223 RGFESVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSK-DKVT-VKTEDGSVYQANYAIVS 283 (448)
Q Consensus 223 ~G~~~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~-~~v~-V~~~~g~~~~ad~VI~a 283 (448)
-|.+.|++.+.+..-= .|+...+|++|.+|..++ +++. |.. +|++++|++||..
T Consensus 229 YG~GELpQ~FcRl~AV------~GG~Y~L~~~i~~i~~~~~g~~~gV~s-~ge~v~~k~vI~d 284 (438)
T PF00996_consen 229 YGLGELPQAFCRLSAV------YGGTYMLNRPIDEIVVDEDGKVIGVKS-EGEVVKAKKVIGD 284 (438)
T ss_dssp T-TTHHHHHHHHHHHH------TT-EEESS--EEEEEEETTTEEEEEEE-TTEEEEESEEEEE
T ss_pred cCCccHHHHHHHHhhh------cCcEEEeCCccceeeeecCCeEEEEec-CCEEEEcCEEEEC
Confidence 7889999998776422 599999999999998854 4444 554 8889999999954
No 120
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.94 E-value=1.4e-08 Score=99.80 Aligned_cols=44 Identities=11% Similarity=0.104 Sum_probs=37.1
Q ss_pred CCceecCceeEEEEec-------CCcEEEEeCCCcEEEeCEEEEeechhhc
Q 013178 246 DPRLKLNKVVRNISYS-------KDKVTVKTEDGSVYQANYAIVSVSIGVL 289 (448)
Q Consensus 246 g~~i~~~~~V~~I~~~-------~~~v~V~~~~g~~~~ad~VI~a~p~~~l 289 (448)
+++++++++|++|+.+ +++++|++.+|++++||.||-|=..+..
T Consensus 134 ~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~ 184 (437)
T TIGR01989 134 NVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSN 184 (437)
T ss_pred CeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCCh
Confidence 4899999999999752 4568999999999999999999876644
No 121
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.94 E-value=1.3e-08 Score=98.50 Aligned_cols=32 Identities=44% Similarity=0.643 Sum_probs=30.9
Q ss_pred CcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 28 NSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 28 ~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
|||+|||||+||++||+.|++.|+ +|+|+|++
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~-~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGI-ETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCC-cEEEEECC
Confidence 799999999999999999999999 79999997
No 122
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.94 E-value=2.8e-08 Score=100.79 Aligned_cols=47 Identities=26% Similarity=0.374 Sum_probs=42.1
Q ss_pred CCCCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEE
Q 013178 22 PTSPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHK 69 (448)
Q Consensus 22 ~~~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s 69 (448)
+....++||+|||+|++|++||+.++++|. +|+|||++..+||.+..
T Consensus 7 ~~~~~~~dvvvvG~G~aG~~aa~~~~~~g~-~v~~iek~~~~gg~~~~ 53 (581)
T PRK06134 7 YPPDLECDVLVIGSGAAGLSAAVTAAWHGL-KVIVVEKDPVFGGTTAW 53 (581)
T ss_pred CCCCCccCEEEECcCHHHHHHHHHHHHCCC-eEEEEecCCCCCccccc
Confidence 445678999999999999999999999999 79999999999997654
No 123
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.94 E-value=1.7e-08 Score=101.76 Aligned_cols=43 Identities=30% Similarity=0.557 Sum_probs=39.1
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEE
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLH 68 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~ 68 (448)
..++||+|||+|++||+||..|+++|. +|+|||+....||.+.
T Consensus 4 d~~~DvvIiG~G~aGl~aA~~~a~~G~-~v~liEk~~~~gG~~~ 46 (557)
T PRK12844 4 DETYDVVVVGSGGGGMCAALAAADSGL-EPLIVEKQDKVGGSTA 46 (557)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCC-cEEEEecCCCCCceec
Confidence 357899999999999999999999999 7999999988898653
No 124
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.94 E-value=6.2e-09 Score=101.62 Aligned_cols=48 Identities=38% Similarity=0.592 Sum_probs=42.4
Q ss_pred CCCCCCcEEEECCChHHHHHHHHHHHcCCCc-EEEEecCCCCCceEEEce
Q 013178 23 TSPPSNSVIIVGAGMSGFMAAKTLEEAGYKD-FIILEASSRVGGRLHKGN 71 (448)
Q Consensus 23 ~~~~~~dViIIGaGiaGL~aA~~L~~~G~~~-V~vlE~~~~~GGr~~s~~ 71 (448)
....++||+|||||.+||++|++|+++|. . ++||||++++||.-+..+
T Consensus 4 ~~~~~~~v~IIGaG~sGlaaa~~L~~~g~-~~~~i~Ek~~~~Gg~W~~~r 52 (443)
T COG2072 4 GVATHTDVAIIGAGQSGLAAAYALKQAGV-PDFVIFEKRDDVGGTWRYNR 52 (443)
T ss_pred CcCCcccEEEECCCHHHHHHHHHHHHcCC-CcEEEEEccCCcCCcchhcc
Confidence 45678999999999999999999999999 6 999999999999544433
No 125
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.93 E-value=2.8e-09 Score=101.99 Aligned_cols=61 Identities=33% Similarity=0.335 Sum_probs=43.0
Q ss_pred CcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEEceeCCceeeecceeccCCCCCCCHHHHHHHHcCCceee
Q 013178 28 NSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNIGGHTIELGANWVNSGGPKSSPSLQIAKKIKLKTFY 107 (448)
Q Consensus 28 ~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~l~~~lgl~~~~ 107 (448)
+||+|||||++||++|..|+++|+ +|+|||++...--.. .+.. ...+..++++++|+....
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~-~v~i~E~~~~~~~~~------------~~~~------l~~~~~~~l~~lgl~~~~ 62 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGI-DVTIIERRPDPRPKG------------RGIG------LSPNSLRILQRLGLLDEI 62 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTC-EEEEEESSSSCCCSS------------SSEE------EEHHHHHHHHHTTEHHHH
T ss_pred ceEEEECCCHHHHHHHHHHHhccc-ccccchhcccccccc------------cccc------cccccccccccccchhhh
Confidence 799999999999999999999999 899999976442100 0111 123456788888876543
No 126
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.92 E-value=4.4e-08 Score=95.80 Aligned_cols=39 Identities=21% Similarity=0.369 Sum_probs=34.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCce
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGR 66 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr 66 (448)
..+||+|||+|.|||+||..++ .|. +|+|+||....||.
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~-~G~-~V~lleK~~~~gg~ 41 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR-KDL-KILMVSKGKLNECN 41 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc-cCC-CEEEEecCCCCCCc
Confidence 5789999999999999999985 698 79999999887773
No 127
>PRK11445 putative oxidoreductase; Provisional
Probab=98.92 E-value=2e-08 Score=95.74 Aligned_cols=45 Identities=20% Similarity=0.171 Sum_probs=37.0
Q ss_pred CCCceecCceeEEEEecCCcEEEEe-CCCc--EEEeCEEEEeechhhc
Q 013178 245 RDPRLKLNKVVRNISYSKDKVTVKT-EDGS--VYQANYAIVSVSIGVL 289 (448)
Q Consensus 245 ~g~~i~~~~~V~~I~~~~~~v~V~~-~~g~--~~~ad~VI~a~p~~~l 289 (448)
.|++++.++.|++++.+++++.|.+ .+|+ +++||.||.|...+..
T Consensus 111 ~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~S~ 158 (351)
T PRK11445 111 ASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADGANSM 158 (351)
T ss_pred cCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCCCCcH
Confidence 3789999999999999888888775 5664 6899999999986543
No 128
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.92 E-value=1.3e-08 Score=95.08 Aligned_cols=41 Identities=24% Similarity=0.323 Sum_probs=36.2
Q ss_pred CCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeech
Q 013178 245 RDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSI 286 (448)
Q Consensus 245 ~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~ 286 (448)
.|+++++ +.|++|+..++.+.|.+.+|.+++||+||+|+..
T Consensus 70 ~gv~~~~-~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~ 110 (300)
T TIGR01292 70 FGAEIIY-EEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGA 110 (300)
T ss_pred cCCeEEE-EEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCC
Confidence 4788888 8999999988888898888889999999999975
No 129
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.92 E-value=2.5e-08 Score=98.33 Aligned_cols=42 Identities=31% Similarity=0.468 Sum_probs=38.8
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEEc
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKG 70 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~ 70 (448)
+|||+|||||++|++||..+++.|+ +|+|+|+ +.+||.|...
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~-~V~lie~-~~~GG~c~~~ 43 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGA-KVAIAEE-PRVGGTCVIR 43 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCC-cEEEEec-CccCceeecC
Confidence 6999999999999999999999999 7999998 5899998753
No 130
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.91 E-value=1.5e-08 Score=97.69 Aligned_cols=45 Identities=29% Similarity=0.514 Sum_probs=40.3
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEE
Q 013178 24 SPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHK 69 (448)
Q Consensus 24 ~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s 69 (448)
+....+|+|||||+|||++|++|.+.|+ +|+||||++.+||.-..
T Consensus 3 ~~~~~~vaIIGAG~sGL~~ar~l~~~g~-~v~vfEr~~~iGGlW~y 47 (448)
T KOG1399|consen 3 MMMSKDVAVIGAGPAGLAAARELLREGH-EVVVFERTDDIGGLWKY 47 (448)
T ss_pred cCCCCceEEECcchHHHHHHHHHHHCCC-CceEEEecCCccceEee
Confidence 3457899999999999999999999999 79999999999995443
No 131
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.91 E-value=3.6e-08 Score=99.19 Aligned_cols=42 Identities=36% Similarity=0.591 Sum_probs=38.8
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEE
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLH 68 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~ 68 (448)
..++||+|||+| +|++||...++.|. +|+||||.+.+||.+.
T Consensus 14 d~e~DvvvvG~G-~G~~aA~~a~~~G~-~v~v~Ek~~~~GG~~~ 55 (564)
T PRK12845 14 DTTVDLLVVGSG-TGMAAALAAHELGL-SVLIVEKSSYVGGSTA 55 (564)
T ss_pred CceeCEEEECCc-HHHHHHHHHHHCCC-cEEEEecCCCCcCccc
Confidence 458999999999 89999999999999 7999999999999654
No 132
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.90 E-value=2.2e-08 Score=99.35 Aligned_cols=40 Identities=30% Similarity=0.507 Sum_probs=35.8
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC-CCCCc
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS-SRVGG 65 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~-~~~GG 65 (448)
..+|||+|||||+||+.||+.+++.|. +|+|+|++ +.+|+
T Consensus 2 ~~~yDVIVVGGGpAG~eAA~~aAR~G~-kV~LiE~~~d~iG~ 42 (618)
T PRK05192 2 PEEYDVIVVGGGHAGCEAALAAARMGA-KTLLLTHNLDTIGQ 42 (618)
T ss_pred CccceEEEECchHHHHHHHHHHHHcCC-cEEEEecccccccc
Confidence 457999999999999999999999999 79999997 46665
No 133
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.89 E-value=3.1e-08 Score=100.57 Aligned_cols=46 Identities=30% Similarity=0.507 Sum_probs=41.2
Q ss_pred CCCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEE
Q 013178 23 TSPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHK 69 (448)
Q Consensus 23 ~~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s 69 (448)
....++||+|||||++||+||+.++++|. +|+|+||....||....
T Consensus 5 ~~~~~~DVvVVG~G~aGl~AA~~aa~~G~-~v~llEk~~~~gG~~~~ 50 (574)
T PRK12842 5 TNELTCDVLVIGSGAGGLSAAITARKLGL-DVVVLEKEPVFGGTTAF 50 (574)
T ss_pred CcCCCCCEEEECcCHHHHHHHHHHHHcCC-eEEEEecCCCCCCccce
Confidence 44568999999999999999999999999 79999999999986643
No 134
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.88 E-value=3.1e-08 Score=97.01 Aligned_cols=40 Identities=28% Similarity=0.394 Sum_probs=35.5
Q ss_pred CCCCCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 21 APTSPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 21 ~~~~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
.....+++||+|||||++|++||+.|+++|+ +|+|+|++.
T Consensus 33 ~~~~~~~~DViIVGaGPAG~~aA~~LA~~G~-~VlllEr~~ 72 (450)
T PLN00093 33 KKLSGRKLRVAVIGGGPAGACAAETLAKGGI-ETFLIERKL 72 (450)
T ss_pred CCcCCCCCeEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Confidence 3344668999999999999999999999999 799999974
No 135
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.88 E-value=3.2e-08 Score=99.86 Aligned_cols=55 Identities=22% Similarity=0.239 Sum_probs=43.8
Q ss_pred HHHHHHHHhhhcccccccCCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeechhhc
Q 013178 227 SVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSIGVL 289 (448)
Q Consensus 227 ~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~l 289 (448)
.|.+.|.+.+. ...++.+++|++|+.++++|+|++.+|+++++|.||.|-.....
T Consensus 195 ~L~~~L~~alg--------~~~i~~g~~V~~I~~~~d~VtV~~~dG~ti~aDlVVGADG~~S~ 249 (668)
T PLN02927 195 TLQQILARAVG--------EDVIRNESNVVDFEDSGDKVTVVLENGQRYEGDLLVGADGIWSK 249 (668)
T ss_pred HHHHHHHhhCC--------CCEEEcCCEEEEEEEeCCEEEEEECCCCEEEcCEEEECCCCCcH
Confidence 46666666642 22478899999999999999999999989999999999876543
No 136
>PRK06996 hypothetical protein; Provisional
Probab=98.88 E-value=3.2e-08 Score=96.21 Aligned_cols=53 Identities=17% Similarity=0.147 Sum_probs=42.7
Q ss_pred HHHHHHHHhhhcccccccCCCceecCceeEEEEecCCcEEEEeCCC---cEEEeCEEEEeec
Q 013178 227 SVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVTVKTEDG---SVYQANYAIVSVS 285 (448)
Q Consensus 227 ~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~g---~~~~ad~VI~a~p 285 (448)
.+-+.|.+.+.+ .|++++.+++|++++.++++|+|+..+| ++++||.||-|-.
T Consensus 116 ~l~~~L~~~~~~------~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~lvIgADG 171 (398)
T PRK06996 116 SLVAALARAVRG------TPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARIAVQAEG 171 (398)
T ss_pred HHHHHHHHHHHh------CCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeEEEECCC
Confidence 455566666654 4789999999999999888999887754 5899999999966
No 137
>PLN02697 lycopene epsilon cyclase
Probab=98.87 E-value=4.2e-08 Score=97.21 Aligned_cols=55 Identities=20% Similarity=0.262 Sum_probs=41.6
Q ss_pred HHHHHHHHhhhcccccccCCCceecCceeEEEEecCCcEE-EEeCCCcEEEeCEEEEeechhh
Q 013178 227 SVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVT-VKTEDGSVYQANYAIVSVSIGV 288 (448)
Q Consensus 227 ~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~-V~~~~g~~~~ad~VI~a~p~~~ 288 (448)
.+.+.|.+.+.+ .|+++ ++++|++|..+++++. +.+.+|.+++|+.||.|.....
T Consensus 193 ~L~~~Ll~~a~~------~GV~~-~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 193 LLHEELLRRCVE------SGVSY-LSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred HHHHHHHHHHHh------cCCEE-EeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence 355566666544 47887 7889999998877765 4567788999999999998654
No 138
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.86 E-value=8.1e-08 Score=98.19 Aligned_cols=40 Identities=33% Similarity=0.453 Sum_probs=35.8
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCc
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGG 65 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GG 65 (448)
...+||+|||||+|||+||..+++.|. +|+|+|+...+|+
T Consensus 33 ~~~~DVlVVG~G~AGl~AAi~Aae~G~-~VilieK~~~~~~ 72 (640)
T PRK07573 33 KRKFDVIVVGTGLAGASAAATLGELGY-NVKVFCYQDSPRR 72 (640)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCC-cEEEEecCCCCCc
Confidence 357899999999999999999999999 7999999777653
No 139
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.85 E-value=3.8e-08 Score=95.46 Aligned_cols=55 Identities=13% Similarity=0.039 Sum_probs=41.4
Q ss_pred HHHHHHHHhhhcccccccCCCceecCceeEEEEec-CCcEEEEeCCCcEEEeCEEEEeechhh
Q 013178 227 SVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYS-KDKVTVKTEDGSVYQANYAIVSVSIGV 288 (448)
Q Consensus 227 ~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~-~~~v~V~~~~g~~~~ad~VI~a~p~~~ 288 (448)
.+.+.|.+.+.+ .|++++ .++|+++..+ ++.+.|++.+|.+++|+.||.|++...
T Consensus 86 ~l~~~l~~~~~~------~gv~~~-~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 86 RLHEELLQKCPE------GGVLWL-ERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred HHHHHHHHHHHh------cCcEEE-ccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 345555555544 477775 6689999887 566788888888999999999998765
No 140
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.85 E-value=2.4e-08 Score=99.31 Aligned_cols=37 Identities=43% Similarity=0.699 Sum_probs=32.3
Q ss_pred CcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCc
Q 013178 28 NSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGG 65 (448)
Q Consensus 28 ~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GG 65 (448)
++|+|||||+|||++|..|.+.|. ++++||+++.+||
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~-~~~~fE~~~~iGG 38 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGL-EVTCFEKSDDIGG 38 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT--EEEEEESSSSSSG
T ss_pred CEEEEECccHHHHHHHHHHHHCCC-CCeEEecCCCCCc
Confidence 689999999999999999999999 8999999999998
No 141
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.85 E-value=1.3e-07 Score=96.59 Aligned_cols=39 Identities=28% Similarity=0.325 Sum_probs=35.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCc
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGG 65 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GG 65 (448)
..+||+|||||+|||+||..++++|. +|+|+|+....||
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~G~-~V~lieK~~~~~g 45 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARERGL-RVAVVCKSLFGKA 45 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHCCC-CEEEEeccCCCCC
Confidence 46899999999999999999999999 7999999976665
No 142
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.84 E-value=1.6e-07 Score=94.56 Aligned_cols=41 Identities=24% Similarity=0.451 Sum_probs=37.5
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCc
Q 013178 24 SPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGG 65 (448)
Q Consensus 24 ~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GG 65 (448)
-...+||+|||||+|||+||..+++.|. +|+|+||....||
T Consensus 13 ~~~~~DVlVIG~G~AGl~AAi~aae~G~-~VilleK~~~~~g 53 (541)
T PRK07804 13 WRDAADVVVVGSGVAGLTAALAARRAGR-RVLVVTKAALDDG 53 (541)
T ss_pred cccccCEEEECccHHHHHHHHHHHHcCC-eEEEEEccCCCCC
Confidence 3567999999999999999999999999 7999999987776
No 143
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.84 E-value=1.6e-07 Score=95.49 Aligned_cols=37 Identities=30% Similarity=0.487 Sum_probs=34.3
Q ss_pred cEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCce
Q 013178 29 SVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGR 66 (448)
Q Consensus 29 dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr 66 (448)
||+|||||+|||+||..+++.|. +|+|+||....||.
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~-~V~lleK~~~~~g~ 37 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGL-NTAVISKVYPTRSH 37 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCC-cEEEEeccCCCCCc
Confidence 89999999999999999999999 79999998877664
No 144
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.84 E-value=3.5e-08 Score=100.12 Aligned_cols=39 Identities=23% Similarity=0.450 Sum_probs=34.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcC--CCcEEEEecCCCCCc
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAG--YKDFIILEASSRVGG 65 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G--~~~V~vlE~~~~~GG 65 (448)
..+||+|||||+|||+||..++++| . +|+|+||....||
T Consensus 2 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~-~V~vleK~~~~gg 42 (575)
T PRK05945 2 LEHDVVIVGGGLAGCRAALEIKRLDPSL-DVAVVAKTHPIRS 42 (575)
T ss_pred CcccEEEECccHHHHHHHHHHHHhcCCC-cEEEEeccCCCch
Confidence 4579999999999999999999875 7 7999999877666
No 145
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.83 E-value=8.3e-08 Score=79.94 Aligned_cols=35 Identities=23% Similarity=0.317 Sum_probs=32.1
Q ss_pred cCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeec
Q 013178 251 LNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVS 285 (448)
Q Consensus 251 ~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p 285 (448)
...+|++|+..++++.|.+.+|..+.||+||+|+.
T Consensus 120 ~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~G 154 (156)
T PF13454_consen 120 VRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATG 154 (156)
T ss_pred EeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCC
Confidence 56799999999999999999999999999999985
No 146
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.83 E-value=1.5e-07 Score=95.91 Aligned_cols=41 Identities=27% Similarity=0.345 Sum_probs=37.0
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCce
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGR 66 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr 66 (448)
..++||+|||||+|||+||..+++.|. +|+|+||....||.
T Consensus 27 ~~~~DVlVIG~G~AGl~AAi~Aa~~G~-~V~lveK~~~~~g~ 67 (617)
T PTZ00139 27 DHTYDAVVVGAGGAGLRAALGLVELGY-KTACISKLFPTRSH 67 (617)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCC-cEEEEeccCCCCCC
Confidence 457899999999999999999999999 79999998877663
No 147
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.83 E-value=9.9e-08 Score=97.25 Aligned_cols=40 Identities=25% Similarity=0.359 Sum_probs=36.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCc
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGG 65 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GG 65 (448)
...+||+|||||+|||+||..++++|. +|+|+||....||
T Consensus 48 ~~~~DVlVIG~G~AGl~AAl~Aae~G~-~VilveK~~~~~g 87 (635)
T PLN00128 48 DHTYDAVVVGAGGAGLRAAIGLSEHGF-NTACITKLFPTRS 87 (635)
T ss_pred eeecCEEEECccHHHHHHHHHHHhcCC-cEEEEEcCCCCCC
Confidence 356899999999999999999999999 7999999877766
No 148
>PRK12839 hypothetical protein; Provisional
Probab=98.82 E-value=1.1e-07 Score=95.89 Aligned_cols=46 Identities=26% Similarity=0.437 Sum_probs=41.4
Q ss_pred CCCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEE
Q 013178 23 TSPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHK 69 (448)
Q Consensus 23 ~~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s 69 (448)
..+.++||+|||+|++||+||+.|++.|. +|+|||+...+||.+..
T Consensus 4 ~~~~~~dv~ViG~G~aG~~aa~~~~~~g~-~v~~iek~~~~gg~~~~ 49 (572)
T PRK12839 4 SMTHTYDVVVVGSGAGGLSAAVAAAYGGA-KVLVVEKASTCGGATAW 49 (572)
T ss_pred CcCCcCCEEEECcCHHHHHHHHHHHHCCC-cEEEEecCCCCCccccc
Confidence 35668999999999999999999999999 79999999999997643
No 149
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.82 E-value=1.2e-07 Score=95.16 Aligned_cols=43 Identities=14% Similarity=0.180 Sum_probs=38.0
Q ss_pred CCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeechh
Q 013178 245 RDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSIG 287 (448)
Q Consensus 245 ~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~ 287 (448)
.|++++++++|++|...++.+.|.+.+|.+++||+||+|+...
T Consensus 279 ~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~ 321 (517)
T PRK15317 279 YDVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGAR 321 (517)
T ss_pred CCCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCC
Confidence 4788999999999999877788888888899999999999864
No 150
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.82 E-value=5.9e-08 Score=97.24 Aligned_cols=43 Identities=23% Similarity=0.249 Sum_probs=37.9
Q ss_pred CCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeechh
Q 013178 245 RDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSIG 287 (448)
Q Consensus 245 ~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~ 287 (448)
.|++++++++|++|..+++.+.|.+.+|..+.||++|+|+...
T Consensus 280 ~gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~ 322 (515)
T TIGR03140 280 YPIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGAR 322 (515)
T ss_pred hCCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCC
Confidence 4789999999999998877788888888889999999999854
No 151
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.81 E-value=2e-07 Score=94.32 Aligned_cols=39 Identities=18% Similarity=0.496 Sum_probs=35.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCc
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGG 65 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GG 65 (448)
..+||+|||||+|||+||..++++|. +|+|+||....||
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~G~-~V~lveK~~~~~g 42 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASAGF-KVAVISKVFPTRS 42 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHCCC-cEEEEEccCCCCC
Confidence 56899999999999999999999999 7999999877666
No 152
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.81 E-value=6.8e-08 Score=94.90 Aligned_cols=57 Identities=7% Similarity=0.025 Sum_probs=44.0
Q ss_pred CchHHHHHHHHHhhhcccccccCCCceecCceeEEEEec--CCcEE-EEeC-CCcEEEeCEEEEeec
Q 013178 223 RGFESVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYS--KDKVT-VKTE-DGSVYQANYAIVSVS 285 (448)
Q Consensus 223 ~G~~~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~--~~~v~-V~~~-~g~~~~ad~VI~a~p 285 (448)
++...+++.|.+.+++ .|++|+++++|++|..+ +++|. |... ++.++.++.||+|+.
T Consensus 120 ~~g~~l~~~L~~~a~~------~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtG 180 (432)
T TIGR02485 120 GGGKALTNALYSSAER------LGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAG 180 (432)
T ss_pred CCHHHHHHHHHHHHHH------cCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCC
Confidence 4566788888888776 69999999999999876 34443 4443 345899999999996
No 153
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=98.80 E-value=2e-08 Score=97.30 Aligned_cols=53 Identities=15% Similarity=0.166 Sum_probs=44.3
Q ss_pred HHHHHHHHHhhhcccccccCCCceecCceeEEEEecCCc-EEEEeCCCcEEEeCEEEEeec
Q 013178 226 ESVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDK-VTVKTEDGSVYQANYAIVSVS 285 (448)
Q Consensus 226 ~~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~-v~V~~~~g~~~~ad~VI~a~p 285 (448)
..+..+|+....+ .|+.|..||+|++|....++ ..|+|..| .+++.+||.|+.
T Consensus 187 ~~lC~ala~~A~~------~GA~viE~cpV~~i~~~~~~~~gVeT~~G-~iet~~~VNaaG 240 (856)
T KOG2844|consen 187 AGLCQALARAASA------LGALVIENCPVTGLHVETDKFGGVETPHG-SIETECVVNAAG 240 (856)
T ss_pred HHHHHHHHHHHHh------cCcEEEecCCcceEEeecCCccceeccCc-ceecceEEechh
Confidence 4566777777665 69999999999999987655 57999999 899999999985
No 154
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.80 E-value=6.1e-08 Score=93.85 Aligned_cols=45 Identities=27% Similarity=0.496 Sum_probs=41.8
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEEc
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKG 70 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~ 70 (448)
.++||++|||||.+|..||.++++.|. +|.|+|++..+||.|-..
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~-kvalvE~~~~lGGtCln~ 46 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGL-KVALVEKGERLGGTCLNV 46 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCC-CEEEEeecCCcCceEEee
Confidence 468999999999999999999999999 499999998999988875
No 155
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.80 E-value=1.2e-07 Score=95.96 Aligned_cols=42 Identities=33% Similarity=0.525 Sum_probs=38.5
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCce
Q 013178 24 SPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGR 66 (448)
Q Consensus 24 ~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr 66 (448)
...++||+|||+|++||+||..++++|. +|+||||....||.
T Consensus 8 ~~~~~DVvVVG~G~AGl~AA~~aae~G~-~VivlEk~~~~gG~ 49 (584)
T PRK12835 8 FDREVDVLVVGSGGGGMTAALTAAARGL-DTLVVEKSAHFGGS 49 (584)
T ss_pred ccCcCCEEEECccHHHHHHHHHHHHCCC-cEEEEEcCCCCCch
Confidence 4467999999999999999999999999 79999999988883
No 156
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.78 E-value=7.5e-08 Score=95.45 Aligned_cols=44 Identities=27% Similarity=0.453 Sum_probs=39.9
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEE
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHK 69 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s 69 (448)
..+|||+|||||.+|++||..|++.|. +|+|+|+.+.+||.|..
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~aa~~G~-~V~lie~~~~~GG~c~n 45 (471)
T PRK06467 2 EIKTQVVVLGAGPAGYSAAFRAADLGL-ETVCVERYSTLGGVCLN 45 (471)
T ss_pred CccceEEEECCCHHHHHHHHHHHHCCC-cEEEEecCCcccccccC
Confidence 457999999999999999999999999 79999998889997654
No 157
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.78 E-value=2.2e-07 Score=91.99 Aligned_cols=34 Identities=35% Similarity=0.571 Sum_probs=31.9
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
++||+|||||+|||+||..+++.|. +|+|+|+..
T Consensus 1 ~~DVvVVGaG~AGl~AAi~aae~G~-~V~liek~~ 34 (466)
T PRK08401 1 MMKVGIVGGGLAGLTAAISLAKKGF-DVTIIGPGI 34 (466)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCC-eEEEEeCCC
Confidence 3799999999999999999999999 799999974
No 158
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.78 E-value=3.1e-07 Score=93.32 Aligned_cols=41 Identities=22% Similarity=0.383 Sum_probs=36.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcC---CCcEEEEecCCCCCce
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAG---YKDFIILEASSRVGGR 66 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G---~~~V~vlE~~~~~GGr 66 (448)
..++||+|||||+|||+||..+++.| . +|+|+||....||.
T Consensus 3 ~~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~-~V~lleK~~~~~~~ 46 (577)
T PRK06069 3 VLKYDVVIVGSGLAGLRAAVAAAERSGGKL-SVAVVSKTQPMRSH 46 (577)
T ss_pred ceecCEEEECccHHHHHHHHHHHHhCCCCC-cEEEEEcccCCCCC
Confidence 34689999999999999999999998 8 79999999877764
No 159
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.77 E-value=2.6e-07 Score=93.97 Aligned_cols=40 Identities=25% Similarity=0.338 Sum_probs=36.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCce
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGR 66 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr 66 (448)
..+||+|||||+|||+||..+++.|. +|+|+||....||.
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~~G~-~V~lveK~~~~~g~ 50 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAEAGL-KTACITKVFPTRSH 50 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCC-cEEEEEccCCCCcc
Confidence 46899999999999999999999999 79999998766663
No 160
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.76 E-value=3e-07 Score=92.48 Aligned_cols=42 Identities=21% Similarity=0.329 Sum_probs=36.8
Q ss_pred CCCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCce
Q 013178 23 TSPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGR 66 (448)
Q Consensus 23 ~~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr 66 (448)
..+..+||+|||+|+|||+||..++ .|. +|+|+||....||.
T Consensus 5 ~~~~e~DVlVVG~G~AGl~AAi~A~-~G~-~V~lieK~~~~gg~ 46 (553)
T PRK07395 5 ILPSQFDVLVVGSGAAGLYAALCLP-SHL-RVGLITKDTLKTSA 46 (553)
T ss_pred cccccCCEEEECccHHHHHHHHHhh-cCC-CEEEEEccCCCCCc
Confidence 4466889999999999999999996 498 79999999887774
No 161
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.76 E-value=2.3e-07 Score=94.90 Aligned_cols=64 Identities=19% Similarity=0.254 Sum_probs=49.2
Q ss_pred CCCCCCcEEEECCChHHHHHHHHHHH-cCCCcEEEEecCCCC--CceEEEceeCCceeeecceeccCCCCCCCHHHHHHH
Q 013178 23 TSPPSNSVIIVGAGMSGFMAAKTLEE-AGYKDFIILEASSRV--GGRLHKGNIGGHTIELGANWVNSGGPKSSPSLQIAK 99 (448)
Q Consensus 23 ~~~~~~dViIIGaGiaGL~aA~~L~~-~G~~~V~vlE~~~~~--GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~l~~ 99 (448)
.+++++||+|||||++||++|..|++ .|+ +|+|||+++.. .|++.. .+.+..++++
T Consensus 28 ~~~~~~dVlIVGAGPaGL~lA~~Lar~~Gi-~v~IiE~~~~~~~~grA~g--------------------l~prtleiL~ 86 (634)
T PRK08294 28 DLPDEVDVLIVGCGPAGLTLAAQLSAFPDI-TTRIVERKPGRLELGQADG--------------------IACRTMEMFQ 86 (634)
T ss_pred cCCCCCCEEEECCCHHHHHHHHHHhcCCCC-cEEEEEcCCCCCCCCeeeE--------------------EChHHHHHHH
Confidence 34668999999999999999999999 599 79999997532 222211 3456788999
Q ss_pred HcCCceee
Q 013178 100 KIKLKTFY 107 (448)
Q Consensus 100 ~lgl~~~~ 107 (448)
++|+....
T Consensus 87 ~lGl~d~l 94 (634)
T PRK08294 87 AFGFAERI 94 (634)
T ss_pred hccchHHH
Confidence 99986543
No 162
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.76 E-value=2.7e-07 Score=93.62 Aligned_cols=40 Identities=20% Similarity=0.335 Sum_probs=36.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCce
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGR 66 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr 66 (448)
..+||+|||||+|||+||..+++.|. +|+|+||....||.
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~Aa~~G~-~V~lleK~~~~~g~ 45 (588)
T PRK08958 6 REFDAVVIGAGGAGMRAALQISQSGQ-SCALLSKVFPTRSH 45 (588)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCC-cEEEEEccCCCCCc
Confidence 46899999999999999999999999 79999998777763
No 163
>PLN02507 glutathione reductase
Probab=98.75 E-value=2e-07 Score=92.92 Aligned_cols=53 Identities=15% Similarity=0.270 Sum_probs=42.8
Q ss_pred HHHHHHHHhhhcccccccCCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeec
Q 013178 227 SVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVS 285 (448)
Q Consensus 227 ~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p 285 (448)
.+...+.+.+.+ .|++|++++.|++|+.+++++.|.+.+|+++.+|.||++++
T Consensus 245 ~~~~~l~~~l~~------~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G 297 (499)
T PLN02507 245 EMRAVVARNLEG------RGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATG 297 (499)
T ss_pred HHHHHHHHHHHh------CCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeec
Confidence 344555555554 59999999999999987777888888888899999999986
No 164
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.75 E-value=4.7e-07 Score=90.19 Aligned_cols=38 Identities=32% Similarity=0.586 Sum_probs=34.4
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCce
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGR 66 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr 66 (448)
.+||+|||||+|||+||..+++.|. |+|+||.+..||.
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~--V~lleK~~~~~g~ 39 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGR--VIVLSKAPVTEGN 39 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCC--EEEEEccCCCCCc
Confidence 4799999999999999999999985 9999999877774
No 165
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.74 E-value=4.5e-07 Score=91.51 Aligned_cols=40 Identities=28% Similarity=0.336 Sum_probs=34.5
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCC-CCce
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSR-VGGR 66 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~-~GGr 66 (448)
...+||+|||||.|||+||..+ +.|. +|+|+||... .||.
T Consensus 5 ~~~~DVlVVG~G~AGl~AAi~A-~~G~-~VilleK~~~~~gG~ 45 (543)
T PRK06263 5 IMITDVLIIGSGGAGARAAIEA-ERGK-NVVIVSKGLFGKSGC 45 (543)
T ss_pred eeccCEEEECccHHHHHHHHHH-hcCC-CEEEEEccCCCCCcc
Confidence 3568999999999999999999 9999 7999999764 4553
No 166
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.74 E-value=4e-07 Score=91.15 Aligned_cols=41 Identities=27% Similarity=0.516 Sum_probs=37.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceE
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRL 67 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~ 67 (448)
..++||+||||| +||+||+++++.|. +|+||||....||..
T Consensus 5 d~~~DVvVVG~G-aGl~aA~~aa~~G~-~V~vlEk~~~~Gg~t 45 (513)
T PRK12837 5 DEEVDVLVAGSG-GGVAGAYTAAREGL-SVALVEATDKFGGTT 45 (513)
T ss_pred CCccCEEEECch-HHHHHHHHHHHCCC-cEEEEecCCCCCcce
Confidence 358899999999 99999999999999 799999998888854
No 167
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=8.5e-08 Score=88.25 Aligned_cols=41 Identities=22% Similarity=0.363 Sum_probs=33.7
Q ss_pred CCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeechh
Q 013178 245 RDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSIG 287 (448)
Q Consensus 245 ~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~ 287 (448)
.++++.. ..|.+++..++.+.|.|++|. +++++||+|+...
T Consensus 74 ~~~~~~~-~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~ 114 (305)
T COG0492 74 FGVEIVE-DEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAG 114 (305)
T ss_pred cCeEEEE-EEEEEEeecCceEEEEECCCe-EEEeEEEECcCCc
Confidence 4666666 788888887767889999995 9999999999854
No 168
>PLN02985 squalene monooxygenase
Probab=98.73 E-value=3.5e-07 Score=91.16 Aligned_cols=66 Identities=26% Similarity=0.360 Sum_probs=47.7
Q ss_pred CCCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEEceeCCceeeecceeccCCCCCCCHHHHHHHHcC
Q 013178 23 TSPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNIGGHTIELGANWVNSGGPKSSPSLQIAKKIK 102 (448)
Q Consensus 23 ~~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~l~~~lg 102 (448)
....++||+|||||++|+++|..|+++|+ +|+|+|+......+.. | .. ..+.-.+.++++|
T Consensus 39 ~~~~~~DViIVGAG~aGlalA~aLa~~G~-~V~vlEr~~~~~~~~~-----------g-~~------L~p~g~~~L~~LG 99 (514)
T PLN02985 39 RKDGATDVIIVGAGVGGSALAYALAKDGR-RVHVIERDLREPERMM-----------G-EF------MQPGGRFMLSKLG 99 (514)
T ss_pred CcCCCceEEEECCCHHHHHHHHHHHHcCC-eEEEEECcCCCCcccc-----------c-cc------cCchHHHHHHHcC
Confidence 34567899999999999999999999999 8999999743211100 0 11 2334567888899
Q ss_pred Cceee
Q 013178 103 LKTFY 107 (448)
Q Consensus 103 l~~~~ 107 (448)
+....
T Consensus 100 l~d~l 104 (514)
T PLN02985 100 LEDCL 104 (514)
T ss_pred Ccchh
Confidence 86543
No 169
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.73 E-value=7.4e-07 Score=84.15 Aligned_cols=59 Identities=20% Similarity=0.317 Sum_probs=46.1
Q ss_pred chHHHHHHHHHhhhcccccccCCCceecCceeEEEEecCCc-EEEEeC-----CCcEEEeCEEEEeechh
Q 013178 224 GFESVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDK-VTVKTE-----DGSVYQANYAIVSVSIG 287 (448)
Q Consensus 224 G~~~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~-v~V~~~-----~g~~~~ad~VI~a~p~~ 287 (448)
-++.|.+.|.+.+.+. .|.++++|++|++|++.+++ +.|.+. +.++++|+.|++...-.
T Consensus 179 nFG~LTr~l~~~l~~~-----~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~ 243 (488)
T PF06039_consen 179 NFGALTRQLVEYLQKQ-----KGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGG 243 (488)
T ss_pred cHHHHHHHHHHHHHhC-----CCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchH
Confidence 3677888888887653 48999999999999998766 777653 23589999999987543
No 170
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.72 E-value=1.5e-07 Score=95.13 Aligned_cols=43 Identities=28% Similarity=0.517 Sum_probs=38.8
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEE
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLH 68 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~ 68 (448)
..++||+|||+|.+|++||..++++|. +|+|||+...+||.+.
T Consensus 5 ~~~~DvvVvG~G~aG~~aA~~aa~~G~-~v~llEk~~~~gG~~~ 47 (557)
T PRK07843 5 VQEYDVVVVGSGAAGMVAALTAAHRGL-STVVVEKAPHYGGSTA 47 (557)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCC-CEEEEeCCCCCCcccc
Confidence 347999999999999999999999999 7999999988888543
No 171
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.71 E-value=3.4e-07 Score=92.98 Aligned_cols=45 Identities=31% Similarity=0.454 Sum_probs=40.4
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEE
Q 013178 24 SPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHK 69 (448)
Q Consensus 24 ~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s 69 (448)
-..++||+|||+|.+|++||..++++|. +|+|||+.+.+||.+..
T Consensus 13 ~~~~~dvvvvG~G~aG~~aa~~~~~~g~-~v~l~ek~~~~gg~~~~ 57 (578)
T PRK12843 13 WDAEFDVIVIGAGAAGMSAALFAAIAGL-KVLLVERTEYVGGTTAT 57 (578)
T ss_pred CCCCCCEEEECcCHHHHHHHHHHHHCCC-cEEEEecCCCCCCcccc
Confidence 3457899999999999999999999999 79999999999996654
No 172
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.71 E-value=6.1e-07 Score=89.67 Aligned_cols=39 Identities=33% Similarity=0.635 Sum_probs=34.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCce
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGR 66 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr 66 (448)
.++||+|||+|+|||+||..+++ |. +|+|+||....||.
T Consensus 2 ~~~DVlVVG~G~AGl~AAl~a~~-g~-~V~lveK~~~~~g~ 40 (510)
T PRK08071 2 PSADVIIIGSGIAALTVAKELCH-EY-NVIIITKKTKRNSN 40 (510)
T ss_pred CccCEEEECccHHHHHHHHHhhc-CC-CEEEEeccCCCCCC
Confidence 36899999999999999999976 88 79999999887774
No 173
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.70 E-value=8.5e-07 Score=89.80 Aligned_cols=41 Identities=22% Similarity=0.354 Sum_probs=35.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHHc--CCCcEEEEecCCCCCceE
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEA--GYKDFIILEASSRVGGRL 67 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~--G~~~V~vlE~~~~~GGr~ 67 (448)
..+||+|||||+|||+||..++++ |. +|+|+||....||.+
T Consensus 2 ~~~DVlVIG~G~AGl~AAl~aa~~g~g~-~V~lveK~~~~~~~s 44 (580)
T TIGR01176 2 AQHDIAVIGAGGAGLRAAIAAAEANPHL-DVALISKVYPMRSHT 44 (580)
T ss_pred cceeEEEECccHHHHHHHHHHHHhCCCC-cEEEEEccCCCCCCc
Confidence 368999999999999999999987 57 799999998877743
No 174
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.70 E-value=8.3e-07 Score=91.03 Aligned_cols=39 Identities=23% Similarity=0.417 Sum_probs=35.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCc
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGG 65 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GG 65 (448)
..+||+|||||+|||+||..++++|. +|+|+|+....+|
T Consensus 4 ~~~DVlVIG~G~AGl~AAi~Aae~G~-~VivleK~~~~~s 42 (657)
T PRK08626 4 IYTDALVIGAGLAGLRVAIAAAQRGL-DTIVLSLVPAKRS 42 (657)
T ss_pred eeccEEEECccHHHHHHHHHHHHcCC-CEEEEeCCCCCCc
Confidence 46899999999999999999999999 7999999876665
No 175
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.70 E-value=7.6e-07 Score=90.36 Aligned_cols=39 Identities=23% Similarity=0.314 Sum_probs=35.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcC--CCcEEEEecCCCCCc
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAG--YKDFIILEASSRVGG 65 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G--~~~V~vlE~~~~~GG 65 (448)
..+||+|||||+|||+||..+++.| . +|+|+||....||
T Consensus 3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~g~-~V~lleK~~~~~g 43 (582)
T PRK09231 3 FQADLAIIGAGGAGLRAAIAAAEANPNL-KIALISKVYPMRS 43 (582)
T ss_pred eeeeEEEECccHHHHHHHHHHHHhCCCC-cEEEEEccCCCCC
Confidence 4689999999999999999999874 6 7999999987777
No 176
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.69 E-value=8.5e-07 Score=90.16 Aligned_cols=41 Identities=32% Similarity=0.385 Sum_probs=36.7
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCce
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGR 66 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr 66 (448)
...+||+|||||+|||+||..+++.|. +|+||||....+|.
T Consensus 10 ~~~~DVlVIG~G~AGl~AAi~Aa~~G~-~V~vleK~~~~~g~ 50 (591)
T PRK07057 10 RRKFDVVIVGAGGSGMRASLQLARAGL-SVAVLSKVFPTRSH 50 (591)
T ss_pred cccCCEEEECccHHHHHHHHHHHHCCC-cEEEEeccCCCCCC
Confidence 357899999999999999999999999 79999998776663
No 177
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.69 E-value=5.4e-07 Score=91.83 Aligned_cols=38 Identities=26% Similarity=0.395 Sum_probs=34.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHHc--CCCcEEEEecCCCCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEA--GYKDFIILEASSRVG 64 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~--G~~~V~vlE~~~~~G 64 (448)
..+||+|||||+|||+||..+++. |. +|+|+||....+
T Consensus 10 ~~~DVlVIG~G~AGl~AAi~Aae~~~G~-~V~lieK~~~~~ 49 (608)
T PRK06854 10 VDTDILIIGGGMAGCGAAFEAKEWAPDL-KVLIVEKANIKR 49 (608)
T ss_pred eEeCEEEECcCHHHHHHHHHHHHhCCCC-eEEEEECCCcCC
Confidence 468999999999999999999998 99 799999987543
No 178
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.69 E-value=4.9e-08 Score=91.81 Aligned_cols=41 Identities=20% Similarity=0.283 Sum_probs=33.7
Q ss_pred CCCceecCceeEEEEecCCcEE-EEeCCCcEEEeCEEEEeech
Q 013178 245 RDPRLKLNKVVRNISYSKDKVT-VKTEDGSVYQANYAIVSVSI 286 (448)
Q Consensus 245 ~g~~i~~~~~V~~I~~~~~~v~-V~~~~g~~~~ad~VI~a~p~ 286 (448)
.+.+|. ..+|++|..++++|. |.+.+|.++.+|.||+|+.+
T Consensus 109 ~nl~i~-~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 109 PNLTII-QGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp TTEEEE-ES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred CCeEEE-EcccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 467775 679999999888865 99999999999999999987
No 179
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=98.69 E-value=5e-07 Score=86.22 Aligned_cols=71 Identities=24% Similarity=0.299 Sum_probs=53.0
Q ss_pred CCcEEEECCChHHHHHHHHHHHcC----CCcEEEEecCCCCCceEEEcee--CCceeeecceeccCCCCCCCHHHHHHHH
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAG----YKDFIILEASSRVGGRLHKGNI--GGHTIELGANWVNSGGPKSSPSLQIAKK 100 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G----~~~V~vlE~~~~~GGr~~s~~~--~g~~~d~G~~~~~~~~~~~~~~~~l~~~ 100 (448)
+.++-|||+|+|+|+||.+|-+.| . +|.|||+.+..||.+.+... .|+..- |+.-+.. .+..+++|++.
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~-nIhIlE~~~~~GGsldg~g~~~~GYv~R-gGR~~~~---~~eclwdLls~ 76 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGE-NIHILEELDVPGGSLDGAGDPENGYVIR-GGRMMEF---HYECLWDLLSS 76 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCcc-ceEEEeCCCCCCCcccCCCCCCCCeeec-CCccccc---hhHHHHHHHHh
Confidence 467889999999999999999864 4 89999999999999887653 244443 3333332 56677777776
Q ss_pred cC
Q 013178 101 IK 102 (448)
Q Consensus 101 lg 102 (448)
.-
T Consensus 77 IP 78 (500)
T PF06100_consen 77 IP 78 (500)
T ss_pred CC
Confidence 43
No 180
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.68 E-value=2.2e-07 Score=82.55 Aligned_cols=40 Identities=30% Similarity=0.605 Sum_probs=37.2
Q ss_pred cEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEE
Q 013178 29 SVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHK 69 (448)
Q Consensus 29 dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s 69 (448)
.|+|||+|+|||+|+-.+-..|- .|+++|+...+||....
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg-~V~llek~~s~GGNSiK 50 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGG-IVILLEKAGSIGGNSIK 50 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCC-eEEEEeccCCcCCccee
Confidence 79999999999999999999998 79999999999997654
No 181
>PLN02815 L-aspartate oxidase
Probab=98.68 E-value=1.1e-06 Score=89.03 Aligned_cols=40 Identities=18% Similarity=0.336 Sum_probs=35.8
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCce
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGR 66 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr 66 (448)
...+||+|||+|+|||+||..+++.| + |+|+||....||.
T Consensus 27 ~~~~DVlVVG~G~AGl~AAl~Aae~G-~-VvlleK~~~~gg~ 66 (594)
T PLN02815 27 TKYFDFLVIGSGIAGLRYALEVAEYG-T-VAIITKDEPHESN 66 (594)
T ss_pred ccccCEEEECccHHHHHHHHHHhhCC-C-EEEEECCCCCCCc
Confidence 34689999999999999999999999 4 9999999888773
No 182
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.67 E-value=2.6e-07 Score=89.54 Aligned_cols=36 Identities=36% Similarity=0.466 Sum_probs=32.6
Q ss_pred CcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCC
Q 013178 28 NSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVG 64 (448)
Q Consensus 28 ~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~G 64 (448)
+||+|||||++|++||+.|+++|+ +|+|+|++...+
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~-~V~llE~~~~~~ 36 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGI-QTFLLERKPDNA 36 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCC-cEEEEecCCCCC
Confidence 589999999999999999999999 799999975443
No 183
>PRK08275 putative oxidoreductase; Provisional
Probab=98.67 E-value=4.5e-07 Score=91.71 Aligned_cols=40 Identities=23% Similarity=0.409 Sum_probs=34.5
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHc--CCCcEEEEecCCCCCc
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEA--GYKDFIILEASSRVGG 65 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~--G~~~V~vlE~~~~~GG 65 (448)
...+||+|||||+|||+||..+++. |. +|+|+||....+|
T Consensus 7 ~~~~DVlVIG~G~AGl~AAi~aa~~g~g~-~VilveK~~~~~~ 48 (554)
T PRK08275 7 EVETDILVIGGGTAGPMAAIKAKERNPAL-RVLLLEKANVKRS 48 (554)
T ss_pred eEecCEEEECcCHHHHHHHHHHHHhCCCC-eEEEEeCCCCCCC
Confidence 3568999999999999999999987 67 7999999876433
No 184
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.66 E-value=8.4e-07 Score=90.21 Aligned_cols=38 Identities=26% Similarity=0.234 Sum_probs=33.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCc
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGG 65 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GG 65 (448)
..+||+|||||+|||+||..+++. . +|+|+||....||
T Consensus 4 ~~~DVlVIG~G~AGl~AAl~aa~~-~-~VilleK~~~~~g 41 (583)
T PRK08205 4 HRYDVVIVGAGGAGMRAAIEAGPR-A-RTAVLTKLYPTRS 41 (583)
T ss_pred eeccEEEECccHHHHHHHHHHHhC-C-CEEEEeCCCCCCC
Confidence 568999999999999999999986 7 7999999876555
No 185
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=98.65 E-value=2.3e-07 Score=82.21 Aligned_cols=77 Identities=18% Similarity=0.254 Sum_probs=53.5
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHc--CCCcEEEEecCCCCCceEEEce----eCCceeeec---ceeccCCCCCCCHH
Q 013178 24 SPPSNSVIIVGAGMSGFMAAKTLEEA--GYKDFIILEASSRVGGRLHKGN----IGGHTIELG---ANWVNSGGPKSSPS 94 (448)
Q Consensus 24 ~~~~~dViIIGaGiaGL~aA~~L~~~--G~~~V~vlE~~~~~GGr~~s~~----~~g~~~d~G---~~~~~~~~~~~~~~ 94 (448)
....+|.+|||||+.||+.|++|.-. +. +|.|||+...++=...+.. ..|.++.-| +.++.. ....+
T Consensus 45 s~~~~D~VvvGgGiVGlAsARel~lrhp~l-~V~vleke~~la~hqSghNSgViHaGIYY~P~SLKAklCV~---G~~Ll 120 (453)
T KOG2665|consen 45 SKERYDLVVVGGGIVGLASARELSLRHPSL-KVAVLEKEKSLAVHQSGHNSGVIHAGIYYKPGSLKAKLCVE---GRELL 120 (453)
T ss_pred ccccccEEEECCceeehhhhHHHhhcCCCc-eEEeeehhhhhceeecccccceeeeeeeeCCcccchhhhhc---cHHHH
Confidence 35689999999999999999999877 77 7999999887765444332 124444333 333333 33456
Q ss_pred HHHHHHcCCc
Q 013178 95 LQIAKKIKLK 104 (448)
Q Consensus 95 ~~l~~~lgl~ 104 (448)
++++.+.+++
T Consensus 121 Y~yc~e~~Ip 130 (453)
T KOG2665|consen 121 YEYCDEKKIP 130 (453)
T ss_pred HHHhhhcCCC
Confidence 7788887775
No 186
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.63 E-value=7e-07 Score=86.14 Aligned_cols=54 Identities=13% Similarity=0.151 Sum_probs=43.1
Q ss_pred HHHHHHHHhhhcccccccCCCceecCceeEEEEecCCcEEE-EeCCC--cEEEeCEEEEeech
Q 013178 227 SVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVTV-KTEDG--SVYQANYAIVSVSI 286 (448)
Q Consensus 227 ~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V-~~~~g--~~~~ad~VI~a~p~ 286 (448)
.+.+.|.+.+.+ .|++|+++++|++++.+++++.+ .+.+| ..+++|.||+|+.-
T Consensus 260 rL~~aL~~~l~~------~Gv~I~~g~~V~~v~~~~~~V~~v~~~~g~~~~i~AD~VVLAtGr 316 (422)
T PRK05329 260 RLQNALRRAFER------LGGRIMPGDEVLGAEFEGGRVTAVWTRNHGDIPLRARHFVLATGS 316 (422)
T ss_pred HHHHHHHHHHHh------CCCEEEeCCEEEEEEEeCCEEEEEEeeCCceEEEECCEEEEeCCC
Confidence 677788888766 58999999999999988777664 34445 35899999999874
No 187
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.63 E-value=9.8e-07 Score=88.29 Aligned_cols=34 Identities=29% Similarity=0.505 Sum_probs=30.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSR 62 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~ 62 (448)
.++||+|||||+|||+||..++ |. +|+|+||...
T Consensus 8 ~~~DVlVIG~G~AGl~AAl~Aa--~~-~V~lleK~~~ 41 (513)
T PRK07512 8 LTGRPVIVGGGLAGLMAALKLA--PR-PVVVLSPAPL 41 (513)
T ss_pred CcCCEEEECchHHHHHHHHHhC--cC-CEEEEECCCC
Confidence 4789999999999999999996 66 7999999876
No 188
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.62 E-value=6.5e-07 Score=97.72 Aligned_cols=43 Identities=33% Similarity=0.567 Sum_probs=39.3
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceE
Q 013178 24 SPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRL 67 (448)
Q Consensus 24 ~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~ 67 (448)
...++||+|||+|.|||+||..+++.|. +|+|+||....||.+
T Consensus 406 ~t~~~DVvVVG~G~AGl~AAi~Aae~Ga-~VivlEK~~~~GG~s 448 (1167)
T PTZ00306 406 GSLPARVIVVGGGLAGCSAAIEAASCGA-QVILLEKEAKLGGNS 448 (1167)
T ss_pred cCCCCCEEEECCCHHHHHHHHHHHHCCC-cEEEEEccCCCCCch
Confidence 3467999999999999999999999999 799999999999854
No 189
>PTZ00367 squalene epoxidase; Provisional
Probab=98.62 E-value=6.6e-07 Score=89.79 Aligned_cols=37 Identities=32% Similarity=0.485 Sum_probs=33.8
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 24 SPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 24 ~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
...++||+|||||++|+++|..|+++|+ +|+|+|++.
T Consensus 30 ~~~~~dViIVGaGiaGlalA~aLar~G~-~V~VlEr~~ 66 (567)
T PTZ00367 30 TNYDYDVIIVGGSIAGPVLAKALSKQGR-KVLMLERDL 66 (567)
T ss_pred cccCccEEEECCCHHHHHHHHHHHhcCC-EEEEEcccc
Confidence 3467999999999999999999999999 899999964
No 190
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.61 E-value=1.2e-06 Score=89.14 Aligned_cols=35 Identities=37% Similarity=0.562 Sum_probs=31.9
Q ss_pred EEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCc
Q 013178 30 VIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGG 65 (448)
Q Consensus 30 ViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GG 65 (448)
|+|||||+|||+||..+++.|. +|+|+||...+||
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~-~VilleK~~~~~~ 35 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGY-HVKLFSYVDAPRR 35 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCC-CEEEEEecCCCCC
Confidence 7999999999999999999999 7999999885643
No 191
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=98.59 E-value=6.8e-07 Score=82.81 Aligned_cols=37 Identities=32% Similarity=0.588 Sum_probs=33.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRV 63 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~ 63 (448)
++.+|+|||||++||++|..|.++|+ +|+|+|++..+
T Consensus 1 ~~~~VvIvGgGI~Gla~A~~l~r~G~-~v~VlE~~e~~ 37 (420)
T KOG2614|consen 1 KEPKVVIVGGGIVGLATALALHRKGI-DVVVLESREDP 37 (420)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCC-eEEEEeecccc
Confidence 35799999999999999999999999 89999996533
No 192
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.58 E-value=2.6e-06 Score=86.64 Aligned_cols=40 Identities=28% Similarity=0.441 Sum_probs=36.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCce
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGR 66 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr 66 (448)
+++||+|||||+|||+||..++++|. +|+|+||....||.
T Consensus 2 ~~~DVlVVG~G~AGl~AAi~Aa~~G~-~V~lieK~~~~~g~ 41 (589)
T PRK08641 2 AKGKVIVVGGGLAGLMATIKAAEAGV-HVDLFSLVPVKRSH 41 (589)
T ss_pred CCccEEEECchHHHHHHHHHHHHcCC-cEEEEEccCCCCCc
Confidence 45699999999999999999999999 79999999877663
No 193
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.57 E-value=3.5e-06 Score=84.91 Aligned_cols=40 Identities=25% Similarity=0.380 Sum_probs=35.7
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCce
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGR 66 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr 66 (448)
...+||+|||+|+|||+||..+++. . +|+|+||....||.
T Consensus 6 ~~~~DVlVVG~G~AGl~AA~~aa~~-~-~VilveK~~~~~g~ 45 (536)
T PRK09077 6 EHQCDVLIIGSGAAGLSLALRLAEH-R-RVAVLSKGPLSEGS 45 (536)
T ss_pred cccCCEEEECchHHHHHHHHHHHHC-C-CEEEEeccCCCCCC
Confidence 4578999999999999999999986 7 79999999887773
No 194
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.50 E-value=1.4e-06 Score=86.28 Aligned_cols=42 Identities=26% Similarity=0.482 Sum_probs=37.3
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEEc
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKG 70 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~ 70 (448)
+.||+|||||.+|+.||..|++.|. +|+|+|++ .+||.|...
T Consensus 1 ~~~vvviG~G~~G~~~a~~~~~~g~-~v~~~e~~-~~gG~c~~~ 42 (466)
T PRK07845 1 MTRIVIIGGGPGGYEAALVAAQLGA-DVTVIERD-GLGGAAVLT 42 (466)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCC-eEEEEEcc-CCCCccccc
Confidence 3589999999999999999999999 79999986 589877653
No 195
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.46 E-value=1.8e-07 Score=92.62 Aligned_cols=44 Identities=30% Similarity=0.450 Sum_probs=40.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEEc
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKG 70 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~ 70 (448)
++|||+|||||++|++||..+++.|+ +|+|+|+++.+||.|...
T Consensus 2 ~~~DvvVIG~GpaG~~AA~~aa~~G~-~V~liE~~~~~GG~c~~~ 45 (466)
T PRK06115 2 ASYDVVIIGGGPGGYNAAIRAGQLGL-KVACVEGRSTLGGTCLNV 45 (466)
T ss_pred CcccEEEECCCHHHHHHHHHHHhCCC-eEEEEecCCceeeeeccC
Confidence 35999999999999999999999999 799999988999988654
No 196
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.46 E-value=2.3e-07 Score=85.23 Aligned_cols=49 Identities=31% Similarity=0.480 Sum_probs=41.2
Q ss_pred CCCCCCCcEEEECCChHHHHHHHHHHHc----CCC-cEEEEecCCCCCceEEEc
Q 013178 22 PTSPPSNSVIIVGAGMSGFMAAKTLEEA----GYK-DFIILEASSRVGGRLHKG 70 (448)
Q Consensus 22 ~~~~~~~dViIIGaGiaGL~aA~~L~~~----G~~-~V~vlE~~~~~GGr~~s~ 70 (448)
......+||+|||||+|||+||.+|.+. +.+ +|+|+|+...+||++-|-
T Consensus 71 ~R~~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSG 124 (621)
T KOG2415|consen 71 ERESEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSG 124 (621)
T ss_pred hhhhccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecc
Confidence 3345679999999999999999999873 333 899999999999998874
No 197
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.45 E-value=2.5e-07 Score=98.16 Aligned_cols=45 Identities=29% Similarity=0.503 Sum_probs=41.2
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEE
Q 013178 24 SPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHK 69 (448)
Q Consensus 24 ~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s 69 (448)
.+..++|+|||||+|||+||++|++.|+ +|+|||+.+++||.+..
T Consensus 303 ~~~gkkVaVIGsGPAGLsaA~~Lar~G~-~VtVfE~~~~~GG~l~y 347 (944)
T PRK12779 303 AAVKPPIAVVGSGPSGLINAYLLAVEGF-PVTVFEAFHDLGGVLRY 347 (944)
T ss_pred cCCCCeEEEECCCHHHHHHHHHHHHCCC-eEEEEeeCCCCCceEEc
Confidence 3457899999999999999999999999 89999999999998763
No 198
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.45 E-value=2.3e-07 Score=92.13 Aligned_cols=42 Identities=24% Similarity=0.487 Sum_probs=38.9
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEEc
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKG 70 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~ 70 (448)
.|||+|||||++|++||+.|++.|. +|+|+|+ +.+||.|...
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~-~v~lie~-~~~GG~~~~~ 42 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGL-KVALVEK-EYLGGTCLNV 42 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCC-eEEEEec-CCCCCceeec
Confidence 4899999999999999999999999 8999999 8999988753
No 199
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.44 E-value=2.8e-07 Score=97.02 Aligned_cols=44 Identities=27% Similarity=0.501 Sum_probs=40.7
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEE
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHK 69 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s 69 (448)
...++|+|||||+|||+||+.|++.|+ +|+|+|+++.+||.+..
T Consensus 535 ~~~kkVaIIGGGPAGLSAA~~LAr~G~-~VTV~Ek~~~lGG~l~~ 578 (1012)
T TIGR03315 535 SSAHKVAVIGAGPAGLSAGYFLARAGH-PVTVFEKKEKPGGVVKN 578 (1012)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCC-eEEEEecccccCceeee
Confidence 356899999999999999999999999 89999999999999865
No 200
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.42 E-value=2.5e-07 Score=91.22 Aligned_cols=43 Identities=23% Similarity=0.474 Sum_probs=39.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEEc
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKG 70 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~ 70 (448)
++|||+|||||++|++||..|++.|+ +|+|+|+. .+||.|...
T Consensus 1 ~~yDvvVIG~GpaG~~aA~~aa~~G~-~V~liE~~-~~GG~c~~~ 43 (450)
T TIGR01421 1 KHYDYLVIGGGSGGIASARRAAEHGA-KALLVEAK-KLGGTCVNV 43 (450)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCC-cEEEeccc-ccccceecc
Confidence 47999999999999999999999999 79999985 799988653
No 201
>PRK12831 putative oxidoreductase; Provisional
Probab=98.42 E-value=3.8e-07 Score=90.05 Aligned_cols=46 Identities=33% Similarity=0.555 Sum_probs=41.9
Q ss_pred CCCCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEE
Q 013178 22 PTSPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLH 68 (448)
Q Consensus 22 ~~~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~ 68 (448)
+.....+||+|||||++||+||+.|++.|+ +|+|+|+.+.+||.+.
T Consensus 135 ~~~~~~~~V~IIG~GpAGl~aA~~l~~~G~-~V~v~e~~~~~GG~l~ 180 (464)
T PRK12831 135 TEEKKGKKVAVIGSGPAGLTCAGDLAKMGY-DVTIFEALHEPGGVLV 180 (464)
T ss_pred CcCCCCCEEEEECcCHHHHHHHHHHHhCCC-eEEEEecCCCCCCeee
Confidence 345678999999999999999999999999 8999999999999875
No 202
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.41 E-value=3e-07 Score=91.39 Aligned_cols=45 Identities=22% Similarity=0.457 Sum_probs=40.6
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEEc
Q 013178 24 SPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKG 70 (448)
Q Consensus 24 ~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~ 70 (448)
|...|||+|||||++|++||..|++.|+ +|+|+|+. .+||.|...
T Consensus 1 ~~~~ydvvVIG~GpaG~~aA~~aa~~G~-~v~lie~~-~~GG~c~~~ 45 (472)
T PRK05976 1 MAKEYDLVIIGGGPGGYVAAIRAGQLGL-KTALVEKG-KLGGTCLHK 45 (472)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCC-eEEEEEcc-CCCcceEcC
Confidence 3468999999999999999999999999 79999986 899988764
No 203
>PRK06116 glutathione reductase; Validated
Probab=98.41 E-value=2.4e-07 Score=91.57 Aligned_cols=43 Identities=26% Similarity=0.482 Sum_probs=39.0
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEE
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHK 69 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s 69 (448)
+.+|||+|||||++|++||..|++.|+ +|+|+|+. .+||.|..
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~~a~~G~-~V~liE~~-~~GG~c~n 44 (450)
T PRK06116 2 TKDYDLIVIGGGSGGIASANRAAMYGA-KVALIEAK-RLGGTCVN 44 (450)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCC-eEEEEecc-chhhhhhc
Confidence 357999999999999999999999999 79999985 89998754
No 204
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.41 E-value=3.2e-07 Score=90.34 Aligned_cols=44 Identities=27% Similarity=0.379 Sum_probs=39.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCC-CCceEEEc
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSR-VGGRLHKG 70 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~-~GGr~~s~ 70 (448)
++|||+|||||++|++||..|++.|+ +|+|+|+++. +||.|...
T Consensus 2 ~~~dvvVIG~GpaG~~aA~~l~~~g~-~V~liE~~~~~~GG~c~~~ 46 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLASAGK-KVALVEESKAMYGGTCINI 46 (438)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCC-EEEEEecCCcccceeeecC
Confidence 46999999999999999999999999 7999999864 79987653
No 205
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.41 E-value=5.2e-07 Score=88.48 Aligned_cols=46 Identities=26% Similarity=0.358 Sum_probs=41.1
Q ss_pred CCCCCCcEEEECCChHHHHHHHHHHH--cCCCcEEEEecCCCCCceEEE
Q 013178 23 TSPPSNSVIIVGAGMSGFMAAKTLEE--AGYKDFIILEASSRVGGRLHK 69 (448)
Q Consensus 23 ~~~~~~dViIIGaGiaGL~aA~~L~~--~G~~~V~vlE~~~~~GGr~~s 69 (448)
......+|+|||||+|||+||+.|++ .|+ +|+|||+.+.+||.++.
T Consensus 22 ~~~~~~~VaIVGaGPAGl~AA~~L~~~~~g~-~Vtv~E~~p~pgGlvr~ 69 (491)
T PLN02852 22 STSEPLHVCVVGSGPAGFYTADKLLKAHDGA-RVDIIERLPTPFGLVRS 69 (491)
T ss_pred CCCCCCcEEEECccHHHHHHHHHHHhhCCCC-eEEEEecCCCCcceEee
Confidence 34457899999999999999999997 799 79999999999998875
No 206
>PRK14727 putative mercuric reductase; Provisional
Probab=98.40 E-value=4.3e-07 Score=90.36 Aligned_cols=54 Identities=26% Similarity=0.270 Sum_probs=46.8
Q ss_pred cccCCCCCCCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEEc
Q 013178 16 FTLVIAPTSPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKG 70 (448)
Q Consensus 16 ~~~~~~~~~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~ 70 (448)
.++.++...+.++||+|||||.+|+++|..|++.|. +|+|+|+++.+||.|...
T Consensus 5 ~~~~~~~~~~~~~dvvvIG~G~aG~~~a~~~~~~g~-~v~~ie~~~~~GG~c~n~ 58 (479)
T PRK14727 5 GSSNCMTRSKLQLHVAIIGSGSAAFAAAIKAAEHGA-RVTIIEGADVIGGCCVNV 58 (479)
T ss_pred CCccccccCCCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEEccCcceeEeccc
Confidence 344555566678999999999999999999999999 799999988999998764
No 207
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.40 E-value=3.9e-07 Score=89.87 Aligned_cols=44 Identities=30% Similarity=0.424 Sum_probs=39.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC-CCCceEEEc
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS-RVGGRLHKG 70 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~-~~GGr~~s~ 70 (448)
++|||+|||||++|++||+.|++.|+ +|+|+|+.+ .+||.|...
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~~g~-~V~lie~~~~~~GG~~~~~ 46 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAKAGW-RVALIEQSNAMYGGTCINI 46 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHHCCC-eEEEEcCCCCccceeEeec
Confidence 46999999999999999999999999 799999976 489988653
No 208
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.38 E-value=9.4e-06 Score=74.23 Aligned_cols=44 Identities=23% Similarity=0.421 Sum_probs=41.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEEc
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKG 70 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~ 70 (448)
..+||+|||+|+.|..||...++.|. +.+.+|++..+||.|-..
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGl-kTacvEkr~~LGGTcLnv 81 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGL-KTACVEKRGTLGGTCLNV 81 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcc-eeEEEeccCccCceeeec
Confidence 68999999999999999999999999 799999999999988775
No 209
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.38 E-value=2.4e-06 Score=81.52 Aligned_cols=56 Identities=11% Similarity=0.108 Sum_probs=45.4
Q ss_pred HHHHHHHHHhhhcccccccCCCceecCceeEEEEecCCcEE-EEeCCC--cEEEeCEEEEeechh
Q 013178 226 ESVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVT-VKTEDG--SVYQANYAIVSVSIG 287 (448)
Q Consensus 226 ~~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~-V~~~~g--~~~~ad~VI~a~p~~ 287 (448)
..+.++|.+.+++ .|++|..+++|+++..+++++. |.+.++ .+++||+||+|+..-
T Consensus 263 ~RL~~aL~~~~~~------~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw 321 (419)
T TIGR03378 263 IRLEEALKHRFEQ------LGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSF 321 (419)
T ss_pred HHHHHHHHHHHHH------CCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCC
Confidence 4577778888776 6999999999999999888876 565665 489999999998643
No 210
>PRK14694 putative mercuric reductase; Provisional
Probab=98.37 E-value=5e-07 Score=89.67 Aligned_cols=46 Identities=24% Similarity=0.353 Sum_probs=41.3
Q ss_pred CCCCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEE
Q 013178 22 PTSPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHK 69 (448)
Q Consensus 22 ~~~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s 69 (448)
|....+|||+|||||++|++||..|++.|+ +|+|+|+. .+||.|..
T Consensus 1 ~~~~~~~dviVIGaG~aG~~aA~~l~~~g~-~v~lie~~-~~GGtc~n 46 (468)
T PRK14694 1 MMSDNNLHIAVIGSGGSAMAAALKATERGA-RVTLIERG-TIGGTCVN 46 (468)
T ss_pred CCCCCcCCEEEECCCHHHHHHHHHHHhCCC-cEEEEEcc-ccccceec
Confidence 345678999999999999999999999999 79999986 79998865
No 211
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.36 E-value=5.7e-07 Score=90.91 Aligned_cols=43 Identities=28% Similarity=0.451 Sum_probs=39.1
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEE
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHK 69 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s 69 (448)
...|||+|||||+|||+||..|++.|+ +|+|+|++ .+||.+..
T Consensus 2 ~~~yDVvIIGgGpAGL~AA~~lar~g~-~V~liE~~-~~GG~~~~ 44 (555)
T TIGR03143 2 EEIYDLIIIGGGPAGLSAGIYAGRAKL-DTLIIEKD-DFGGQITI 44 (555)
T ss_pred CCcCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecC-CCCceEEe
Confidence 456999999999999999999999999 89999995 79998764
No 212
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.36 E-value=7.7e-06 Score=81.41 Aligned_cols=37 Identities=27% Similarity=0.377 Sum_probs=32.9
Q ss_pred CcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCc
Q 013178 28 NSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGG 65 (448)
Q Consensus 28 ~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GG 65 (448)
|||+|||||++|+.+|..+++.|. +|+|+|++...+|
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~-~v~Lie~~~~~~g 37 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGA-KTLLLTLNLDTIG 37 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCC-CEEEEeccccccc
Confidence 699999999999999999999999 7999999744433
No 213
>PRK06370 mercuric reductase; Validated
Probab=98.35 E-value=5.1e-07 Score=89.55 Aligned_cols=45 Identities=22% Similarity=0.351 Sum_probs=39.3
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEEc
Q 013178 24 SPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKG 70 (448)
Q Consensus 24 ~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~ 70 (448)
|..+|||+|||||++|++||..|++.|+ +|+|+|+. .+||.|...
T Consensus 2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~-~v~lie~~-~~GG~c~~~ 46 (463)
T PRK06370 2 PAQRYDAIVIGAGQAGPPLAARAAGLGM-KVALIERG-LLGGTCVNT 46 (463)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCC-eEEEEecC-ccCCceecc
Confidence 3456999999999999999999999999 89999986 678877653
No 214
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.35 E-value=5.3e-07 Score=89.49 Aligned_cols=43 Identities=30% Similarity=0.502 Sum_probs=39.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEEc
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKG 70 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~ 70 (448)
..|||+|||||++|++||..|++.|+ +|+|+|+.. +||.|...
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~-~V~liE~~~-~GG~c~~~ 45 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGL-KVAIVEKEK-LGGTCLNR 45 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCC-cEEEEeccc-cccceeec
Confidence 46999999999999999999999999 799999976 99988654
No 215
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.35 E-value=5.1e-07 Score=89.61 Aligned_cols=42 Identities=29% Similarity=0.563 Sum_probs=38.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEE
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHK 69 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s 69 (448)
++|||+|||||++|++||..|++.|+ +|+|+|+ +.+||.|..
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~-~v~lie~-~~~GG~~~~ 43 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGK-KVALIEK-GPLGGTCLN 43 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCC-eEEEEeC-Cccccceec
Confidence 46999999999999999999999999 7999999 689997764
No 216
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.33 E-value=1.8e-05 Score=77.76 Aligned_cols=58 Identities=19% Similarity=0.334 Sum_probs=39.0
Q ss_pred CCchHHHHHHHHHhhhcccccccCCCceecCceeEEEEecCCc-E-EEEeCCCcEEEeCEEEEeechhhc
Q 013178 222 PRGFESVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDK-V-TVKTEDGSVYQANYAIVSVSIGVL 289 (448)
Q Consensus 222 ~~G~~~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~-v-~V~~~~g~~~~ad~VI~a~p~~~l 289 (448)
+.-+..+....++. .|++++.++ |.++..++++ | .|.+.+|++++||.||=|+....+
T Consensus 153 R~~fd~~L~~~A~~---------~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~ 212 (454)
T PF04820_consen 153 RAKFDQFLRRHAEE---------RGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSL 212 (454)
T ss_dssp HHHHHHHHHHHHHH---------TT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-C
T ss_pred HHHHHHHHHHHHhc---------CCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccch
Confidence 34455555555554 599998885 7788776554 4 589999999999999999987543
No 217
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.32 E-value=7.3e-07 Score=93.52 Aligned_cols=44 Identities=30% Similarity=0.488 Sum_probs=41.0
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEE
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHK 69 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s 69 (448)
...++|+|||||+|||+||+.|++.|+ +|+|+|+.+.+||.++.
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~-~VtV~Ek~~~~GG~lr~ 580 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGH-PVTVFEREENAGGVVKN 580 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCC-eEEEEecccccCcceee
Confidence 567899999999999999999999999 89999999999998764
No 218
>PRK10262 thioredoxin reductase; Provisional
Probab=98.32 E-value=8e-07 Score=83.79 Aligned_cols=46 Identities=22% Similarity=0.421 Sum_probs=40.5
Q ss_pred CCCCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEE
Q 013178 22 PTSPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHK 69 (448)
Q Consensus 22 ~~~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s 69 (448)
|...+.+||+|||||++||+||..|++.|+ +++|+|+. ..||.+..
T Consensus 1 ~~~~~~~~vvIIGgGpaGl~aA~~l~~~g~-~~~~ie~~-~~gg~~~~ 46 (321)
T PRK10262 1 MGTTKHSKLLILGSGPAGYTAAVYAARANL-QPVLITGM-EKGGQLTT 46 (321)
T ss_pred CCCCCcCCEEEECCCHHHHHHHHHHHHCCC-CeEEEEee-cCCCceec
Confidence 456789999999999999999999999999 79999965 67887754
No 219
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.32 E-value=7.1e-07 Score=83.78 Aligned_cols=47 Identities=32% Similarity=0.625 Sum_probs=41.9
Q ss_pred CCCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEEc
Q 013178 23 TSPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKG 70 (448)
Q Consensus 23 ~~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~ 70 (448)
......+++|||||+||++||..|++.|+ +|.|+|+++.+|||....
T Consensus 120 ~~~v~~svLVIGGGvAGitAAl~La~~G~-~v~LVEKepsiGGrmak~ 166 (622)
T COG1148 120 KVEVSKSVLVIGGGVAGITAALELADMGF-KVYLVEKEPSIGGRMAKL 166 (622)
T ss_pred HHhhccceEEEcCcHHHHHHHHHHHHcCC-eEEEEecCCcccccHHhh
Confidence 33456789999999999999999999999 799999999999997553
No 220
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.32 E-value=7.4e-07 Score=88.46 Aligned_cols=43 Identities=26% Similarity=0.407 Sum_probs=38.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEEc
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKG 70 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~ 70 (448)
++|||+|||||++|++||..|++.|. +|+|+|++ .+||.|...
T Consensus 3 ~~~DvvIIG~GpaG~~AA~~aa~~G~-~V~lie~~-~~GG~c~~~ 45 (466)
T PRK07818 3 THYDVVVLGAGPGGYVAAIRAAQLGL-KTAVVEKK-YWGGVCLNV 45 (466)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCC-eEEEEecC-CCCCceecC
Confidence 36999999999999999999999999 79999985 789988664
No 221
>PTZ00188 adrenodoxin reductase; Provisional
Probab=98.31 E-value=1.2e-06 Score=84.80 Aligned_cols=51 Identities=24% Similarity=0.229 Sum_probs=43.3
Q ss_pred CCCCCCCCCCcEEEECCChHHHHHHHHHH-HcCCCcEEEEecCCCCCceEEEc
Q 013178 19 VIAPTSPPSNSVIIVGAGMSGFMAAKTLE-EAGYKDFIILEASSRVGGRLHKG 70 (448)
Q Consensus 19 ~~~~~~~~~~dViIIGaGiaGL~aA~~L~-~~G~~~V~vlE~~~~~GGr~~s~ 70 (448)
|-++......+|+|||||+|||+||.+|. +.|+ +|+|+|+.+.+||.++..
T Consensus 31 ~~~~~~~~~krVAIVGaGPAGlyaA~~Ll~~~g~-~VtlfEk~p~pgGLvR~G 82 (506)
T PTZ00188 31 CFFTNEAKPFKVGIIGAGPSALYCCKHLLKHERV-KVDIFEKLPNPYGLIRYG 82 (506)
T ss_pred ccCCCCCCCCEEEEECCcHHHHHHHHHHHHhcCC-eEEEEecCCCCccEEEEe
Confidence 44455566789999999999999999765 6799 799999999999999863
No 222
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.29 E-value=9.2e-06 Score=82.37 Aligned_cols=33 Identities=30% Similarity=0.517 Sum_probs=30.6
Q ss_pred cEEEECCChHHHHHHHHHH----HcCCCcEEEEecCCC
Q 013178 29 SVIIVGAGMSGFMAAKTLE----EAGYKDFIILEASSR 62 (448)
Q Consensus 29 dViIIGaGiaGL~aA~~L~----~~G~~~V~vlE~~~~ 62 (448)
||+|||||+|||+||..++ ++|. +|+|+||...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~-~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGL-KIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCC-eEEEEEccCC
Confidence 8999999999999999998 7899 7999999865
No 223
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.29 E-value=7.1e-07 Score=87.31 Aligned_cols=38 Identities=32% Similarity=0.554 Sum_probs=32.3
Q ss_pred cEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceE
Q 013178 29 SVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRL 67 (448)
Q Consensus 29 dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~ 67 (448)
||||||||++|++||..+++.|. +|+|+|+.+.+||..
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~-~VlLiE~~~~lGG~~ 38 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGA-KVLLIEKGGFLGGMA 38 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS--EEEE-SSSSSTGGG
T ss_pred CEEEECccHHHHHHHHHHHHCCC-EEEEEECCccCCCcc
Confidence 89999999999999999999999 799999999999943
No 224
>PTZ00058 glutathione reductase; Provisional
Probab=98.27 E-value=1.2e-06 Score=88.00 Aligned_cols=43 Identities=21% Similarity=0.357 Sum_probs=39.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEEc
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKG 70 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~ 70 (448)
.+|||+|||||.+|++||..+++.|. +|+|+|++ .+||.|-..
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G~-~ValIEk~-~~GGtCln~ 89 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNKA-KVALVEKD-YLGGTCVNV 89 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCC-eEEEEecc-ccccccccc
Confidence 57999999999999999999999999 79999986 799988664
No 225
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.26 E-value=1.2e-06 Score=88.67 Aligned_cols=43 Identities=35% Similarity=0.687 Sum_probs=39.2
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC--CCCceEE
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS--RVGGRLH 68 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~--~~GGr~~ 68 (448)
..++||+|||+|.|||+||..++++|. +|+||||.+ ..||.+.
T Consensus 2 ~~~~DVvVVG~G~AGl~AAl~Aa~~G~-~VivlEK~~~~~~GG~s~ 46 (549)
T PRK12834 2 AMDADVIVVGAGLAGLVAAAELADAGK-RVLLLDQENEANLGGQAF 46 (549)
T ss_pred CccCCEEEECcCHHHHHHHHHHHHCCC-eEEEEeCCCCCCCCCcee
Confidence 367899999999999999999999999 799999999 7898654
No 226
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.26 E-value=1.5e-06 Score=85.71 Aligned_cols=45 Identities=29% Similarity=0.523 Sum_probs=40.7
Q ss_pred CCCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEE
Q 013178 23 TSPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLH 68 (448)
Q Consensus 23 ~~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~ 68 (448)
.+.+.++|+|||||++||+||+.|++.|+ +|+|+|+++.+||.+.
T Consensus 129 ~~~~~~~V~IIG~G~aGl~aA~~l~~~G~-~V~vie~~~~~GG~l~ 173 (449)
T TIGR01316 129 APSTHKKVAVIGAGPAGLACASELAKAGH-SVTVFEALHKPGGVVT 173 (449)
T ss_pred CCCCCCEEEEECcCHHHHHHHHHHHHCCC-cEEEEecCCCCCcEee
Confidence 34567899999999999999999999999 7999999999999764
No 227
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.24 E-value=1.2e-06 Score=87.14 Aligned_cols=44 Identities=27% Similarity=0.493 Sum_probs=38.8
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEec------CCCCCceEEE
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEA------SSRVGGRLHK 69 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~------~~~~GGr~~s 69 (448)
.+.|||+|||||++|++||..|++.|. +|+|+|+ ...+||.|..
T Consensus 2 ~~~~DviIIG~G~aG~~aA~~~~~~g~-~v~lie~~~~~~g~~~~Gg~c~n 51 (475)
T PRK06327 2 SKQFDVVVIGAGPGGYVAAIRAAQLGL-KVACIEAWKNPKGKPALGGTCLN 51 (475)
T ss_pred CcceeEEEECCCHHHHHHHHHHHhCCC-eEEEEecccCCCCCCCcCCcccc
Confidence 357999999999999999999999999 7999998 3578887754
No 228
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.23 E-value=1.5e-06 Score=93.13 Aligned_cols=44 Identities=36% Similarity=0.474 Sum_probs=40.2
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEE
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHK 69 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s 69 (448)
.+.++|+|||||+|||+||+.|++.|+ +|+|||+.+.+||.++.
T Consensus 428 ~~~~kVaIIG~GPAGLsaA~~La~~G~-~VtV~E~~~~~GG~l~~ 471 (1006)
T PRK12775 428 KKLGKVAICGSGPAGLAAAADLVKYGV-DVTVYEALHVVGGVLQY 471 (1006)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEecCCCCcceeec
Confidence 356899999999999999999999999 89999999999997653
No 229
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.23 E-value=1.3e-06 Score=86.74 Aligned_cols=40 Identities=28% Similarity=0.509 Sum_probs=36.6
Q ss_pred CcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEE
Q 013178 28 NSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHK 69 (448)
Q Consensus 28 ~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s 69 (448)
|||+|||||++|++||..|++.|+ +|+|+|+.. +||.|..
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~-~v~lie~~~-~GG~c~n 40 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGA-SVAMVERGP-LGGTCVN 40 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCc-ccCCeee
Confidence 799999999999999999999999 799999875 8887754
No 230
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=2.1e-05 Score=72.54 Aligned_cols=96 Identities=16% Similarity=0.301 Sum_probs=69.9
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEEceeC---------------------Cceeeeccee
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNIG---------------------GHTIELGANW 83 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~~~~---------------------g~~~d~G~~~ 83 (448)
...|||+|+|-|+.=...+-.|+..|. +|+.+|+++.-||-..|.+.. .+-+|+=+.+
T Consensus 2 deeyDvivlGTgl~ecilS~~Ls~~gk-kVLhiDrN~yYG~~sasltl~ql~~~f~~~~~~~~~~~~~~rd~nvDLiPK~ 80 (440)
T KOG1439|consen 2 DEEYDVIVLGTGLTECILSGALSVDGK-KVLHIDRNDYYGGESASLTLEQLYKKFKKVSEKPPEKLGRDRDWNVDLIPKF 80 (440)
T ss_pred CCceeEEEEcCCchhheeeeeeeecCc-EEEEEeCCCCCCccccceeHHHHHHHhccccccCccccccccccchhhchHh
Confidence 345999999999999999999999999 799999999999998875321 1333444444
Q ss_pred ccCCCCCCCHHHHHHHHcCCceeecccccccceEEecCCcccc
Q 013178 84 VNSGGPKSSPSLQIAKKIKLKTFYSDYANLTSNIYKQDGGLYQ 126 (448)
Q Consensus 84 ~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~g~~~~ 126 (448)
+. ....+..++-+.|+..+.....-....+|. .|+.+.
T Consensus 81 lm----An~~Lvk~Li~T~V~~YL~fk~i~gsfv~~-~~k~~K 118 (440)
T KOG1439|consen 81 LM----ANGELVKILIHTGVTRYLEFKSISGSFVYK-KGKIYK 118 (440)
T ss_pred hh----ccchHHHHHHHhchhhheEEEeecceEEEE-CCeEEE
Confidence 43 356677888888888776655444445565 556554
No 231
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.22 E-value=1.8e-06 Score=89.19 Aligned_cols=44 Identities=27% Similarity=0.496 Sum_probs=40.5
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEE
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHK 69 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s 69 (448)
.+.++|+|||||+|||+||+.|++.|+ +|+|+|+.+.+||.+..
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~-~V~V~E~~~~~GG~l~~ 368 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNGV-AVTVYDRHPEIGGLLTF 368 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCCCCceeee
Confidence 457899999999999999999999999 79999999999997654
No 232
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.21 E-value=2.1e-06 Score=85.15 Aligned_cols=46 Identities=33% Similarity=0.567 Sum_probs=41.0
Q ss_pred CCCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEE
Q 013178 23 TSPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHK 69 (448)
Q Consensus 23 ~~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s 69 (448)
.+...++|+|||||++||++|+.|++.|+ +|+|+|+.+.+||....
T Consensus 139 ~~~~~~~VvIIGaGpAGl~aA~~l~~~G~-~V~vie~~~~~GG~l~~ 184 (471)
T PRK12810 139 VKRTGKKVAVVGSGPAGLAAADQLARAGH-KVTVFERADRIGGLLRY 184 (471)
T ss_pred cCCCCCEEEEECcCHHHHHHHHHHHhCCC-cEEEEecCCCCCceeee
Confidence 34556899999999999999999999999 79999999999997643
No 233
>PRK13748 putative mercuric reductase; Provisional
Probab=98.21 E-value=1.4e-06 Score=88.70 Aligned_cols=43 Identities=23% Similarity=0.343 Sum_probs=39.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEEc
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKG 70 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~ 70 (448)
..|||+|||||++|++||..|++.|. +|+|+|++ .+||.|...
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~-~v~lie~~-~~GG~c~n~ 139 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGA-RVTLIERG-TIGGTCVNV 139 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCC-eEEEEecC-cceeecccc
Confidence 46999999999999999999999999 79999997 899988653
No 234
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.21 E-value=1.7e-06 Score=86.24 Aligned_cols=52 Identities=17% Similarity=0.142 Sum_probs=41.8
Q ss_pred HHHHHHHhhhcccccccCCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeec
Q 013178 228 VVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVS 285 (448)
Q Consensus 228 l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p 285 (448)
+.+.+.+.+++ .|+++++++.|++|+..++.+.|.+.+|+++.+|.||+++.
T Consensus 224 ~~~~l~~~l~~------~GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G 275 (499)
T PTZ00052 224 CSEKVVEYMKE------QGTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATG 275 (499)
T ss_pred HHHHHHHHHHH------cCCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeC
Confidence 44555555554 58999999999999887666778777888899999999985
No 235
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.19 E-value=2.3e-06 Score=89.83 Aligned_cols=44 Identities=32% Similarity=0.601 Sum_probs=40.4
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEE
Q 013178 24 SPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLH 68 (448)
Q Consensus 24 ~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~ 68 (448)
+...++|+|||||+|||+||+.|++.|+ +|+|+|+.+.+||.+.
T Consensus 428 ~~~~~~V~IIGaGpAGl~aA~~l~~~G~-~V~v~e~~~~~GG~l~ 471 (752)
T PRK12778 428 EKNGKKVAVIGSGPAGLSFAGDLAKRGY-DVTVFEALHEIGGVLK 471 (752)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCC-eEEEEecCCCCCCeee
Confidence 3567899999999999999999999999 8999999999999865
No 236
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.17 E-value=4.3e-05 Score=81.76 Aligned_cols=37 Identities=32% Similarity=0.510 Sum_probs=33.9
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCC
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSR 62 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~ 62 (448)
...+||+|||||.|||+||..+++.|. +|+|+||...
T Consensus 11 ~~~~DVlVVG~G~AGl~AAl~Aa~~G~-~V~lleK~~~ 47 (897)
T PRK13800 11 RLDCDVLVIGGGTAGTMAALTAAEHGA-NVLLLEKAHV 47 (897)
T ss_pred eeecCEEEECcCHHHHHHHHHHHHCCC-eEEEEecccc
Confidence 356899999999999999999999999 7999999864
No 237
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.16 E-value=3e-06 Score=83.87 Aligned_cols=44 Identities=39% Similarity=0.688 Sum_probs=40.2
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEE
Q 013178 24 SPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLH 68 (448)
Q Consensus 24 ~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~ 68 (448)
+...++|+|||||++||++|+.|++.|+ +|+|+|+++.+||...
T Consensus 137 ~~~~~~VvIIGgGpaGl~aA~~l~~~g~-~V~lie~~~~~gG~l~ 180 (457)
T PRK11749 137 PKTGKKVAVIGAGPAGLTAAHRLARKGY-DVTIFEARDKAGGLLR 180 (457)
T ss_pred ccCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEccCCCCCcEee
Confidence 4567899999999999999999999999 8999999999999754
No 238
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.16 E-value=3.2e-06 Score=87.07 Aligned_cols=45 Identities=33% Similarity=0.524 Sum_probs=40.7
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEE
Q 013178 24 SPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHK 69 (448)
Q Consensus 24 ~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s 69 (448)
....++|+|||||++||++|+.|++.|+ +|+|+|+++.+||.+..
T Consensus 190 ~~~~k~VaIIGaGpAGl~aA~~La~~G~-~Vtv~e~~~~~GG~l~~ 234 (652)
T PRK12814 190 PKSGKKVAIIGAGPAGLTAAYYLLRKGH-DVTIFDANEQAGGMMRY 234 (652)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC-cEEEEecCCCCCceeee
Confidence 3456899999999999999999999999 79999999999998753
No 239
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=98.16 E-value=2.8e-06 Score=82.52 Aligned_cols=46 Identities=37% Similarity=0.546 Sum_probs=42.0
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEEc
Q 013178 24 SPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKG 70 (448)
Q Consensus 24 ~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~ 70 (448)
.....+|+|||||++||+||+.|+++|+ +|+|+|+.+..||++...
T Consensus 120 ~~tg~~VaviGaGPAGl~~a~~L~~~G~-~Vtv~e~~~~~GGll~yG 165 (457)
T COG0493 120 SRTGKKVAVIGAGPAGLAAADDLSRAGH-DVTVFERVALDGGLLLYG 165 (457)
T ss_pred CCCCCEEEEECCCchHhhhHHHHHhCCC-eEEEeCCcCCCceeEEec
Confidence 3445899999999999999999999999 899999999999998763
No 240
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=98.15 E-value=2.6e-06 Score=88.46 Aligned_cols=44 Identities=18% Similarity=0.332 Sum_probs=38.4
Q ss_pred CCCCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCce
Q 013178 22 PTSPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGR 66 (448)
Q Consensus 22 ~~~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr 66 (448)
+.+...++|+|||||+|||+||++|++.|+ +|+|+|+.++.|+.
T Consensus 378 ~~~~tgKKVaVVGaGPAGLsAA~~La~~Gh-~Vtv~E~~~i~gl~ 421 (1028)
T PRK06567 378 PKEPTNYNILVTGLGPAGFSLSYYLLRSGH-NVTAIDGLKITLLP 421 (1028)
T ss_pred CCCCCCCeEEEECcCHHHHHHHHHHHhCCC-eEEEEccccccccc
Confidence 344578899999999999999999999999 89999998766554
No 241
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.14 E-value=2.5e-06 Score=81.73 Aligned_cols=36 Identities=36% Similarity=0.678 Sum_probs=33.6
Q ss_pred cEEEECCChHHHHHHHHHHHc--CCCcEEEEecCCCCCc
Q 013178 29 SVIIVGAGMSGFMAAKTLEEA--GYKDFIILEASSRVGG 65 (448)
Q Consensus 29 dViIIGaGiaGL~aA~~L~~~--G~~~V~vlE~~~~~GG 65 (448)
||+|||||+|||++|+.|+++ |+ +|+|+|+.+.+||
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~-~V~lle~~~~~~~ 38 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDF-RIRVIEAGRTIGG 38 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCC-eEEEEeCCCCCCC
Confidence 899999999999999999998 99 7999999887776
No 242
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.14 E-value=3.2e-06 Score=83.85 Aligned_cols=44 Identities=16% Similarity=0.317 Sum_probs=39.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHHc-CCCcEEEEecC--------CCCCceEEEc
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEA-GYKDFIILEAS--------SRVGGRLHKG 70 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~-G~~~V~vlE~~--------~~~GGr~~s~ 70 (448)
++|||+|||||.+|..||..+++. |. +|+|+|+. +.+||.|-..
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~-~V~lie~~~~~~~~~~~~~GGtCln~ 54 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKK-RVAVIDVQTHHGPPHYAALGGTCVNV 54 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCC-EEEEEecccCccccccCCccCeecCc
Confidence 579999999999999999999997 89 79999984 5799988765
No 243
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.13 E-value=5.2e-05 Score=71.35 Aligned_cols=57 Identities=21% Similarity=0.348 Sum_probs=49.1
Q ss_pred CchHHHHHHHHHhhhcccccccCCCceecCceeEEEEecCCcE-EEEeCCCcEEEeCEEEEeec
Q 013178 223 RGFESVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKV-TVKTEDGSVYQANYAIVSVS 285 (448)
Q Consensus 223 ~G~~~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v-~V~~~~g~~~~ad~VI~a~p 285 (448)
+.+..+++.+.+.|++ .|++|+++|+|..|+..++.+ .|.+.+|.++.+|+||+|..
T Consensus 170 D~l~~vvkni~~~l~~------~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~G 227 (486)
T COG2509 170 DILPKVVKNIREYLES------LGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPG 227 (486)
T ss_pred cchHHHHHHHHHHHHh------cCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccC
Confidence 3456678888888877 799999999999999988764 58888999999999999986
No 244
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=98.12 E-value=8.2e-06 Score=80.76 Aligned_cols=44 Identities=30% Similarity=0.616 Sum_probs=40.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEE
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHK 69 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s 69 (448)
++..+|+|||||++||+||+.|++.|+ +|+|+|+.+.+||.+..
T Consensus 139 ~~~~~V~IIG~GpaGl~aA~~l~~~G~-~V~i~e~~~~~gG~l~~ 182 (467)
T TIGR01318 139 PTGKRVAVIGAGPAGLACADILARAGV-QVVVFDRHPEIGGLLTF 182 (467)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCCceeee
Confidence 467899999999999999999999999 79999999999997753
No 245
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=98.12 E-value=3.4e-06 Score=86.37 Aligned_cols=44 Identities=39% Similarity=0.584 Sum_probs=40.9
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEE
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHK 69 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s 69 (448)
...++|+|||+|++||+||-+|.++|+ .|+|+|+++|+||....
T Consensus 1783 rtg~~vaiigsgpaglaaadqlnk~gh-~v~vyer~dr~ggll~y 1826 (2142)
T KOG0399|consen 1783 RTGKRVAIIGSGPAGLAAADQLNKAGH-TVTVYERSDRVGGLLMY 1826 (2142)
T ss_pred ccCcEEEEEccCchhhhHHHHHhhcCc-EEEEEEecCCcCceeee
Confidence 456899999999999999999999999 79999999999998765
No 246
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.12 E-value=3.5e-06 Score=80.25 Aligned_cols=37 Identities=27% Similarity=0.336 Sum_probs=33.6
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVG 64 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~G 64 (448)
+.||+|||||++|+.||+.|++.|+ +|+|+|+++...
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl-~V~LiE~rp~~~ 38 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGV-PVELYEMRPVKK 38 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCC-cEEEEEccCccC
Confidence 4699999999999999999999999 799999876554
No 247
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.12 E-value=4.2e-06 Score=86.08 Aligned_cols=44 Identities=32% Similarity=0.555 Sum_probs=40.5
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEE
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHK 69 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s 69 (448)
+...+|+|||||++||++|+.|++.|+ +|+|+|+.+.+||.+..
T Consensus 308 ~~~kkVaIIG~GpaGl~aA~~L~~~G~-~Vtv~e~~~~~GG~l~~ 351 (639)
T PRK12809 308 PRSEKVAVIGAGPAGLGCADILARAGV-QVDVFDRHPEIGGMLTF 351 (639)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHcCC-cEEEEeCCCCCCCeeec
Confidence 457899999999999999999999999 79999999999998653
No 248
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.10 E-value=2.8e-05 Score=76.93 Aligned_cols=43 Identities=16% Similarity=0.273 Sum_probs=34.6
Q ss_pred CCCceecCceeEEEEecCCcEEEEeC-CCcEEE--eCEEEEeechh
Q 013178 245 RDPRLKLNKVVRNISYSKDKVTVKTE-DGSVYQ--ANYAIVSVSIG 287 (448)
Q Consensus 245 ~g~~i~~~~~V~~I~~~~~~v~V~~~-~g~~~~--ad~VI~a~p~~ 287 (448)
.|+++++++.|++|..+++.|.+... +|++++ ||++|+|+...
T Consensus 69 ~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~ 114 (444)
T PRK09564 69 SGIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGAR 114 (444)
T ss_pred CCCeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCC
Confidence 37889999999999988888887653 355666 99999999743
No 249
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.10 E-value=3.9e-06 Score=90.40 Aligned_cols=43 Identities=33% Similarity=0.546 Sum_probs=40.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEE
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHK 69 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s 69 (448)
..+||+|||||+|||+||..|++.|. +|+|+|+++++||.+..
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~-~V~liD~~~~~GG~~~~ 204 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGA-RVILVDEQPEAGGSLLS 204 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCCCCCeeec
Confidence 46899999999999999999999999 79999999999998865
No 250
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=5.4e-05 Score=69.05 Aligned_cols=98 Identities=17% Similarity=0.264 Sum_probs=71.2
Q ss_pred CCCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEEceeC--------------------Cceeeecce
Q 013178 23 TSPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNIG--------------------GHTIELGAN 82 (448)
Q Consensus 23 ~~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~~~~--------------------g~~~d~G~~ 82 (448)
.....|||+|+|-|+.=...+..|+.+|. +|+.+|+++.-|+...|.+.. .+-+|+-+.
T Consensus 2 d~~~~yDvii~GTgl~esils~~Ls~~~k-~VlhiD~Nd~YG~~~asltl~ql~~~~~~~~~~p~k~~~drd~~iDL~PK 80 (434)
T COG5044 2 DEETLYDVIILGTGLRESILSAALSWDGK-NVLHIDKNDYYGSTSASLTLTQLEKYFDECEKRPSKGGGDRDLNIDLIPK 80 (434)
T ss_pred CccccccEEEecccHHHHHHHHHhhhcCc-eEEEEeCCCccCccccceeHHHHHHHhhhhhccccccccccccchhhchh
Confidence 34458999999999999999999999999 899999999999988775321 133444455
Q ss_pred eccCCCCCCCHHHHHHHHcCCceeecccccccceEEecCCcccc
Q 013178 83 WVNSGGPKSSPSLQIAKKIKLKTFYSDYANLTSNIYKQDGGLYQ 126 (448)
Q Consensus 83 ~~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~g~~~~ 126 (448)
.+.. ...+..++-+.|+..+.....-....+|. +++.++
T Consensus 81 ~l~A----~s~l~~iLi~t~v~~YLefk~i~~~~~~~-~~k~~k 119 (434)
T COG5044 81 FLFA----NSELLKILIETGVTEYLEFKQISGSFLYR-PGKIYK 119 (434)
T ss_pred hhcc----cchHHHHHHHhChHhheeeeeccccEEec-CCcEEE
Confidence 4443 56678888888888766554444445555 445543
No 251
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.07 E-value=5.7e-06 Score=74.22 Aligned_cols=42 Identities=38% Similarity=0.702 Sum_probs=36.7
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC--CCCCceE
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS--SRVGGRL 67 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~--~~~GGr~ 67 (448)
...+||||||||++||.||.+|+++|+ +|+|+|+. ..+||++
T Consensus 3 ~~~~dvivvgaglaglvaa~elA~aG~-~V~ildQEgeqnlGGQA 46 (552)
T COG3573 3 GLTADVIVVGAGLAGLVAAAELADAGK-RVLILDQEGEQNLGGQA 46 (552)
T ss_pred cccccEEEECccHHHHHHHHHHHhcCc-eEEEEccccccccccee
Confidence 357899999999999999999999999 79999984 4567755
No 252
>PLN02546 glutathione reductase
Probab=98.04 E-value=5e-06 Score=83.52 Aligned_cols=43 Identities=23% Similarity=0.291 Sum_probs=38.2
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEec---------CCCCCceEEEc
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEA---------SSRVGGRLHKG 70 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~---------~~~~GGr~~s~ 70 (448)
+|||+|||||.+|+.||..+++.|. +|+|+|+ .+.+||.|-..
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~~G~-~V~liE~~~~~~~~~~~~~~GGtC~n~ 130 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASNFGA-SAAVCELPFATISSDTLGGVGGTCVLR 130 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCC-eEEEEeccccccccccCCCccCcccCc
Confidence 5899999999999999999999999 7999996 25688877664
No 253
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=98.04 E-value=7.5e-06 Score=81.37 Aligned_cols=44 Identities=34% Similarity=0.550 Sum_probs=40.1
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEE
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHK 69 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s 69 (448)
...++|+|||||++||++|..|++.|+ +|+|+|+.+++||.+..
T Consensus 141 ~~~~~V~IIGaG~aGl~aA~~L~~~g~-~V~v~e~~~~~gG~l~~ 184 (485)
T TIGR01317 141 RTGKKVAVVGSGPAGLAAADQLNRAGH-TVTVFEREDRCGGLLMY 184 (485)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCC-eEEEEecCCCCCceeec
Confidence 445799999999999999999999999 79999999999997753
No 254
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.03 E-value=9.4e-05 Score=70.55 Aligned_cols=39 Identities=28% Similarity=0.360 Sum_probs=33.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCC--cEEEEecCCCCCc
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYK--DFIILEASSRVGG 65 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~--~V~vlE~~~~~GG 65 (448)
+++|+|||+|.+|++.|.+|.+.-.- .|.|+|.+..+|+
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~ 41 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQ 41 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCC
Confidence 47999999999999999999996321 4999999999886
No 255
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=98.01 E-value=6.3e-06 Score=75.37 Aligned_cols=35 Identities=34% Similarity=0.492 Sum_probs=32.9
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
...+||||||||++|.+.|+.|+|.|. +|.|+|++
T Consensus 43 ~~~~DvIIVGAGV~GsaLa~~L~kdGR-rVhVIERD 77 (509)
T KOG1298|consen 43 DGAADVIIVGAGVAGSALAYALAKDGR-RVHVIERD 77 (509)
T ss_pred CCcccEEEECCcchHHHHHHHHhhCCc-EEEEEecc
Confidence 567999999999999999999999999 89999995
No 256
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.00 E-value=7.1e-06 Score=73.54 Aligned_cols=54 Identities=13% Similarity=0.202 Sum_probs=44.1
Q ss_pred HHHHHHHHhhhcccccccCCCceecCceeEEEEecCCcEE-EEeCCCc--EEEeCEEEEeech
Q 013178 227 SVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVT-VKTEDGS--VYQANYAIVSVSI 286 (448)
Q Consensus 227 ~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~-V~~~~g~--~~~ad~VI~a~p~ 286 (448)
++-++|...+++ .|+.+..+.+|.+.+..+++|+ |-|.++. .+++|.+|+|+.-
T Consensus 259 Rl~~~L~~~f~~------~Gg~~m~Gd~V~~a~~~~~~v~~i~trn~~diP~~a~~~VLAsGs 315 (421)
T COG3075 259 RLHNQLQRQFEQ------LGGLWMPGDEVKKATCKGGRVTEIYTRNHADIPLRADFYVLASGS 315 (421)
T ss_pred hHHHHHHHHHHH------cCceEecCCceeeeeeeCCeEEEEEecccccCCCChhHeeeeccc
Confidence 356677777776 6999999999999999999986 7777763 4789999999863
No 257
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.00 E-value=0.00011 Score=70.07 Aligned_cols=59 Identities=12% Similarity=0.228 Sum_probs=41.5
Q ss_pred HHHHHHHHhhhcccccccCCCceecCceeEEEEecCC-cE---EEEeCCC--cEEEeCEEEEeec-hhhcc
Q 013178 227 SVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKD-KV---TVKTEDG--SVYQANYAIVSVS-IGVLQ 290 (448)
Q Consensus 227 ~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~-~v---~V~~~~g--~~~~ad~VI~a~p-~~~l~ 290 (448)
.+...|.+.+.+. ++++|..++.+.++..+++ .+ .+...++ .++.++.||+|+. ...+.
T Consensus 134 ~I~~~L~~~v~~~-----p~I~v~e~~~a~~li~~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG~g~ly 199 (518)
T COG0029 134 EIMTALLKKVRNR-----PNITVLEGAEALDLIIEDGIGVAGVLVLNRNGELGTFRAKAVVLATGGLGGLY 199 (518)
T ss_pred HHHHHHHHHHhcC-----CCcEEEecchhhhhhhcCCceEeEEEEecCCCeEEEEecCeEEEecCCCcccc
Confidence 4666777776543 5899999999999998887 34 3333333 4688999999985 44443
No 258
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.00 E-value=7.1e-06 Score=78.70 Aligned_cols=37 Identities=30% Similarity=0.408 Sum_probs=33.8
Q ss_pred CcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCc
Q 013178 28 NSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGG 65 (448)
Q Consensus 28 ~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GG 65 (448)
.||+|||||++|+.||+.|++.|+ +|+|+|+++..+-
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~-~V~LiE~rp~~~~ 37 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGV-PVILYEMRPEKLT 37 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCC-cEEEEeccccccC
Confidence 489999999999999999999999 7999999877654
No 259
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.97 E-value=8.7e-06 Score=83.04 Aligned_cols=43 Identities=30% Similarity=0.453 Sum_probs=39.0
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC-CCCCceEEEc
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS-SRVGGRLHKG 70 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~-~~~GGr~~s~ 70 (448)
+|||+|||||.+|.+||..+++.|. +|+|+|++ +.+||.|-..
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~-kV~lie~~~~~lGGtCvn~ 159 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGL-KVIIFTGDDDSIGGTCVNV 159 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCC-cEEEEeCCCCccccceeEe
Confidence 6899999999999999999999999 79999974 4799988764
No 260
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.96 E-value=5.3e-06 Score=77.28 Aligned_cols=35 Identities=43% Similarity=0.637 Sum_probs=29.8
Q ss_pred CcEEEECCChHHHHHHHHHHHcC-CCcEEEEecCCCC
Q 013178 28 NSVIIVGAGMSGFMAAKTLEEAG-YKDFIILEASSRV 63 (448)
Q Consensus 28 ~dViIIGaGiaGL~aA~~L~~~G-~~~V~vlE~~~~~ 63 (448)
||+||||+|.+|..+|.+|+++| . +|+|||+....
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~-~VlvlEaG~~~ 36 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNK-KVLVLEAGPRY 36 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS--EEEEESSBSC
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCC-cEEEEEccccC
Confidence 79999999999999999999997 5 79999997543
No 261
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.96 E-value=1.6e-05 Score=75.94 Aligned_cols=47 Identities=30% Similarity=0.485 Sum_probs=41.5
Q ss_pred CCCCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEE
Q 013178 22 PTSPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHK 69 (448)
Q Consensus 22 ~~~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s 69 (448)
..+....+|+|||||++|+++|..|++.|+ +|+|+|+.+.+||....
T Consensus 13 ~~~~~~~~VvIIG~G~aGl~aA~~l~~~g~-~v~lie~~~~~gg~~~~ 59 (352)
T PRK12770 13 KPPPTGKKVAIIGAGPAGLAAAGYLACLGY-EVHVYDKLPEPGGLMLF 59 (352)
T ss_pred CCCCCCCEEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCCCCCceeee
Confidence 344567799999999999999999999999 79999999999997653
No 262
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.94 E-value=1.5e-05 Score=81.09 Aligned_cols=44 Identities=30% Similarity=0.542 Sum_probs=40.3
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEE
Q 013178 24 SPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLH 68 (448)
Q Consensus 24 ~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~ 68 (448)
.....+|+|||||++||++|+.|++.|+ +|+|+|+.+.+||..+
T Consensus 134 ~~~g~~V~VIGaGpaGL~aA~~l~~~G~-~V~v~e~~~~~GG~l~ 177 (564)
T PRK12771 134 PDTGKRVAVIGGGPAGLSAAYHLRRMGH-AVTIFEAGPKLGGMMR 177 (564)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCCCCCeee
Confidence 4567899999999999999999999999 7999999999999764
No 263
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=97.93 E-value=3.4e-06 Score=70.63 Aligned_cols=68 Identities=25% Similarity=0.349 Sum_probs=48.4
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCC-cEEEEecCCCCCceEEEceeCCceeeecceeccCCCCCCCHHHHHHHHcCCce
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYK-DFIILEASSRVGGRLHKGNIGGHTIELGANWVNSGGPKSSPSLQIAKKIKLKT 105 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~-~V~vlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~l~~~lgl~~ 105 (448)
..||+|||||-+||+|||.+++.... +|+|+|++-.+||-++- |++.|... --..+.--++.|+|++.
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaWL----------GGQLFSAM-vvRKPAhLFL~EigvpY 144 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAWL----------GGQLFSAM-VVRKPAHLFLQEIGVPY 144 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcccc----------cchhhhhh-hhcChHHHHHHHhCCCc
Confidence 46999999999999999999976443 79999999888885443 33333221 12233444778888873
No 264
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=97.91 E-value=2.3e-05 Score=57.05 Aligned_cols=35 Identities=31% Similarity=0.583 Sum_probs=32.1
Q ss_pred cEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCC
Q 013178 29 SVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVG 64 (448)
Q Consensus 29 dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~G 64 (448)
+|+|||||..|+-+|..|++.|. +|+|+|+++++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~-~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGK-EVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS-EEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCc-EEEEEeccchhh
Confidence 58999999999999999999999 899999987653
No 265
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.90 E-value=0.00014 Score=70.65 Aligned_cols=40 Identities=23% Similarity=0.390 Sum_probs=34.8
Q ss_pred CCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeec
Q 013178 245 RDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVS 285 (448)
Q Consensus 245 ~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p 285 (448)
.|++|++++.|++|+. ++.+.|.+.+|+++.+|.||+++.
T Consensus 199 ~GV~i~~~~~V~~i~~-~~~~~v~l~~g~~i~aD~Vv~a~G 238 (396)
T PRK09754 199 AGVRILLNNAIEHVVD-GEKVELTLQSGETLQADVVIYGIG 238 (396)
T ss_pred CCCEEEeCCeeEEEEc-CCEEEEEECCCCEEECCEEEECCC
Confidence 4899999999999987 556778888898999999999886
No 266
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.89 E-value=1.4e-05 Score=69.79 Aligned_cols=32 Identities=38% Similarity=0.640 Sum_probs=29.8
Q ss_pred cEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 29 SVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 29 dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
||+|||||+||++||..|++.|. +|+|+|+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~-~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGA-KVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS-EEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcCCC-eEEEEeccc
Confidence 79999999999999999999999 899998753
No 267
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.88 E-value=1.5e-05 Score=79.28 Aligned_cols=42 Identities=26% Similarity=0.524 Sum_probs=36.9
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC-----C---CCCceEEE
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS-----S---RVGGRLHK 69 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~-----~---~~GGr~~s 69 (448)
+|||+|||||++|+.||..+++.|. +|+|+|+. . .+||.|..
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~-~v~lie~~~~~~~~~~~~~GGtc~n 51 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGA-KVMLLDFVTPTPLGTRWGIGGTCVN 51 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCCCCCCcceeccccccc
Confidence 5899999999999999999999999 79999973 1 57887655
No 268
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=97.88 E-value=4e-05 Score=74.14 Aligned_cols=56 Identities=9% Similarity=0.129 Sum_probs=47.2
Q ss_pred HHHHHHHHHhhhcccccccCCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeechhh
Q 013178 226 ESVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSIGV 288 (448)
Q Consensus 226 ~~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~ 288 (448)
..+...|.+.+.+ |++|+.+++|++|+.+++++.|.+.+|..++||+||+|+.+..
T Consensus 135 ~~~~~~l~~~~~~-------G~~i~~~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G~~~ 190 (381)
T TIGR03197 135 PQLCRALLAHAGI-------RLTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQA 190 (381)
T ss_pred HHHHHHHHhccCC-------CcEEEeCCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCCccc
Confidence 5677778777643 7899999999999998888999999997799999999987543
No 269
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.87 E-value=1.6e-05 Score=78.91 Aligned_cols=37 Identities=24% Similarity=0.298 Sum_probs=35.2
Q ss_pred CcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCc
Q 013178 28 NSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGG 65 (448)
Q Consensus 28 ~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GG 65 (448)
|||+|||+|++|+++|+.|+++|+ +|+|+|+....||
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~-~v~~~e~~~~~~~ 37 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGL-KVAMVEIGAADSF 37 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCC-eEEEEeccCccCC
Confidence 699999999999999999999999 7999999988886
No 270
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=97.87 E-value=0.0022 Score=60.86 Aligned_cols=57 Identities=18% Similarity=0.206 Sum_probs=46.9
Q ss_pred hHHHHHHHHHhhhcccccccCCCceecCceeEEEEecCCcEE-EEeCCCcEEEeCEEEEeechhh
Q 013178 225 FESVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVT-VKTEDGSVYQANYAIVSVSIGV 288 (448)
Q Consensus 225 ~~~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~-V~~~~g~~~~ad~VI~a~p~~~ 288 (448)
...+...|++.+.+ .|++++.+++|++|+.+++++. |.+.+| +++||+||+|+.+..
T Consensus 136 p~~l~~~l~~~~~~------~g~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~~ 193 (337)
T TIGR02352 136 PRALLKALEKALEK------LGVEIIEHTEVQHIEIRGEKVTAIVTPSG-DVQADQVVLAAGAWA 193 (337)
T ss_pred hHHHHHHHHHHHHH------cCCEEEccceEEEEEeeCCEEEEEEcCCC-EEECCEEEEcCChhh
Confidence 45677777777766 5999999999999998887764 777777 899999999998644
No 271
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.86 E-value=0.00023 Score=70.78 Aligned_cols=41 Identities=17% Similarity=0.323 Sum_probs=35.5
Q ss_pred CCCceecCceeEEEEecCCcEEEEeCCC--cEEEeCEEEEeec
Q 013178 245 RDPRLKLNKVVRNISYSKDKVTVKTEDG--SVYQANYAIVSVS 285 (448)
Q Consensus 245 ~g~~i~~~~~V~~I~~~~~~v~V~~~~g--~~~~ad~VI~a~p 285 (448)
.|+++++++.|++|+.+++++.+.+.+| +++.+|.||+|+.
T Consensus 224 ~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G 266 (461)
T TIGR01350 224 KGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVG 266 (461)
T ss_pred cCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecC
Confidence 4889999999999998887888877777 5799999999985
No 272
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.85 E-value=4.1e-05 Score=73.23 Aligned_cols=42 Identities=24% Similarity=0.327 Sum_probs=37.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEE
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLH 68 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~ 68 (448)
..+||+|||||.+|.-||...+-.|. +|.++|++|...|..+
T Consensus 66 ~~fDVLIIGGGAtGaGcALDA~TRGL-ktaLVE~~DF~SGTSS 107 (680)
T KOG0042|consen 66 HEFDVLIIGGGATGAGCALDAATRGL-KTALVEAGDFASGTSS 107 (680)
T ss_pred CcccEEEECCCccCcceeehhhcccc-eeEEEecccccCCccc
Confidence 35999999999999999999999999 7999999987777543
No 273
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.85 E-value=0.00021 Score=68.97 Aligned_cols=42 Identities=10% Similarity=0.229 Sum_probs=37.1
Q ss_pred CCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeech
Q 013178 245 RDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSI 286 (448)
Q Consensus 245 ~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~ 286 (448)
.|++++++++|++|+.+++.+.|.+.+|+++.+|.||+|+..
T Consensus 196 ~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~ 237 (377)
T PRK04965 196 MGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGL 237 (377)
T ss_pred CCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCC
Confidence 488999999999999877778888889989999999999863
No 274
>PRK13984 putative oxidoreductase; Provisional
Probab=97.84 E-value=2.6e-05 Score=80.04 Aligned_cols=44 Identities=34% Similarity=0.567 Sum_probs=40.4
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEE
Q 013178 24 SPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLH 68 (448)
Q Consensus 24 ~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~ 68 (448)
..+..+|+|||||++|+++|+.|++.|+ +|+|||+.+.+||...
T Consensus 280 ~~~~~~v~IIGaG~aGl~aA~~L~~~G~-~v~vie~~~~~gG~~~ 323 (604)
T PRK13984 280 EKKNKKVAIVGSGPAGLSAAYFLATMGY-EVTVYESLSKPGGVMR 323 (604)
T ss_pred ccCCCeEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCCCCceEe
Confidence 4567899999999999999999999999 8999999999999765
No 275
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.83 E-value=8.6e-05 Score=70.07 Aligned_cols=36 Identities=28% Similarity=0.316 Sum_probs=27.6
Q ss_pred CCcEEEECCChHHHHHHHHHHHcC-CCcEEEEecCCCC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAG-YKDFIILEASSRV 63 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G-~~~V~vlE~~~~~ 63 (448)
.+|+|+||.|+++|+.|..|.+.+ . +++.||+++.+
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~-~~~f~e~~~~f 38 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDL-KALFLERRPSF 38 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH----EEEEES-SS-
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCC-CEEEEecCCCC
Confidence 589999999999999999999987 7 79999997643
No 276
>PRK02106 choline dehydrogenase; Validated
Probab=97.82 E-value=2.1e-05 Score=79.97 Aligned_cols=37 Identities=32% Similarity=0.494 Sum_probs=33.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHHH-cCCCcEEEEecCCC
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEE-AGYKDFIILEASSR 62 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~-~G~~~V~vlE~~~~ 62 (448)
...+|+||||||.+|+.+|.+|++ .|+ +|+|||+...
T Consensus 3 ~~~~D~iIVG~G~aG~vvA~rLae~~g~-~VlvlEaG~~ 40 (560)
T PRK02106 3 TMEYDYIIIGAGSAGCVLANRLSEDPDV-SVLLLEAGGP 40 (560)
T ss_pred CCcCcEEEECCcHHHHHHHHHHHhCCCC-eEEEecCCCc
Confidence 456999999999999999999999 899 7999999753
No 277
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=97.79 E-value=2.7e-05 Score=70.12 Aligned_cols=38 Identities=32% Similarity=0.487 Sum_probs=33.3
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHc----CCCcEEEEecCCCC
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEA----GYKDFIILEASSRV 63 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~----G~~~V~vlE~~~~~ 63 (448)
+.+.||+|||||.+|++.||.|.+. |. +|+|+|+++..
T Consensus 84 ~~~~dVvIIGGG~~GsS~AfWLKer~rd~gl-~VvVVErddty 125 (509)
T KOG2853|consen 84 PYHCDVVIIGGGGSGSSTAFWLKERARDEGL-NVVVVERDDTY 125 (509)
T ss_pred ccccCEEEECCCccchhhHHHHHHHhhcCCc-eEEEEeccCcc
Confidence 3578999999999999999999974 68 89999998743
No 278
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.78 E-value=0.00019 Score=69.22 Aligned_cols=34 Identities=29% Similarity=0.500 Sum_probs=30.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEec
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEA 59 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~ 59 (448)
...|||||||||.||.-||...++.|. ++.++=-
T Consensus 2 ~~~~DVIVIGgGHAG~EAA~AaARmG~-ktlLlT~ 35 (621)
T COG0445 2 PKEYDVIVIGGGHAGVEAALAAARMGA-KTLLLTL 35 (621)
T ss_pred CCCCceEEECCCccchHHHHhhhccCC-eEEEEEc
Confidence 346999999999999999999999999 6888854
No 279
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.76 E-value=2.8e-05 Score=77.07 Aligned_cols=40 Identities=23% Similarity=0.576 Sum_probs=35.9
Q ss_pred cEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEEc
Q 013178 29 SVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKG 70 (448)
Q Consensus 29 dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~ 70 (448)
+|+|||||.+|++||..|++.|. +|+|+|++ .+||.|...
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~-~V~lie~~-~~GG~c~n~ 41 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGK-NVTLIDEA-DLGGTCLNE 41 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCC-cEEEEECC-cccccCCCC
Confidence 89999999999999999999999 79999986 578877553
No 280
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.76 E-value=0.00036 Score=69.32 Aligned_cols=41 Identities=32% Similarity=0.547 Sum_probs=35.1
Q ss_pred CCCceecCceeEEEEecCCcEEEEeCCC---cEEEeCEEEEeec
Q 013178 245 RDPRLKLNKVVRNISYSKDKVTVKTEDG---SVYQANYAIVSVS 285 (448)
Q Consensus 245 ~g~~i~~~~~V~~I~~~~~~v~V~~~~g---~~~~ad~VI~a~p 285 (448)
.|++++++++|++|+.+++++.+.+.+| +++.+|.||+|+.
T Consensus 226 ~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G 269 (462)
T PRK06416 226 RGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVG 269 (462)
T ss_pred cCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeC
Confidence 4899999999999998877787777665 6799999999975
No 281
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.74 E-value=0.00037 Score=73.71 Aligned_cols=41 Identities=20% Similarity=0.281 Sum_probs=34.9
Q ss_pred CCCceecCceeEEEEecC--CcEEEEeCCCcEEEeCEEEEeec
Q 013178 245 RDPRLKLNKVVRNISYSK--DKVTVKTEDGSVYQANYAIVSVS 285 (448)
Q Consensus 245 ~g~~i~~~~~V~~I~~~~--~~v~V~~~~g~~~~ad~VI~a~p 285 (448)
.|++|++++.|++|..++ ....|.+.+|+++.+|.||+|++
T Consensus 200 ~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G 242 (847)
T PRK14989 200 MGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTG 242 (847)
T ss_pred CCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCC
Confidence 599999999999998653 23567888999999999999986
No 282
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.73 E-value=3.6e-05 Score=77.04 Aligned_cols=43 Identities=26% Similarity=0.393 Sum_probs=38.2
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceE
Q 013178 24 SPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRL 67 (448)
Q Consensus 24 ~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~ 67 (448)
...++||+|||||.|||.||..++++|. +|+|+||....+|..
T Consensus 3 ~~~~~DvvVIG~G~AGl~AAi~aa~~g~-~V~l~~K~~~~rg~t 45 (562)
T COG1053 3 TIHEFDVVVIGGGGAGLRAAIEAAEAGL-KVALLSKAPPKRGHT 45 (562)
T ss_pred ccccCCEEEECCcHHHHHHHHHHHhcCC-cEEEEEccccCCCch
Confidence 3567999999999999999999999999 799999987777543
No 283
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.71 E-value=3.8e-05 Score=80.73 Aligned_cols=34 Identities=15% Similarity=0.310 Sum_probs=31.5
Q ss_pred CcEEEECCChHHHHHHHHHHHc--CCCcEEEEecCCC
Q 013178 28 NSVIIVGAGMSGFMAAKTLEEA--GYKDFIILEASSR 62 (448)
Q Consensus 28 ~dViIIGaGiaGL~aA~~L~~~--G~~~V~vlE~~~~ 62 (448)
++|+|||||++||+||..|++. |+ +|+|+|++..
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~-~V~vlEr~~~ 36 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAH-EVTVVERNRP 36 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCC-eEEEEecCCC
Confidence 4799999999999999999998 89 8999999875
No 284
>PRK06116 glutathione reductase; Validated
Probab=97.66 E-value=0.00074 Score=66.88 Aligned_cols=41 Identities=24% Similarity=0.387 Sum_probs=35.7
Q ss_pred CCCceecCceeEEEEecCCc-EEEEeCCCcEEEeCEEEEeec
Q 013178 245 RDPRLKLNKVVRNISYSKDK-VTVKTEDGSVYQANYAIVSVS 285 (448)
Q Consensus 245 ~g~~i~~~~~V~~I~~~~~~-v~V~~~~g~~~~ad~VI~a~p 285 (448)
.|++++++++|++|+.++++ +.|.+.+|+++.+|.||+|+.
T Consensus 221 ~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G 262 (450)
T PRK06116 221 KGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIG 262 (450)
T ss_pred CCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeC
Confidence 48999999999999987555 778888888899999999985
No 285
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.64 E-value=0.00084 Score=66.69 Aligned_cols=41 Identities=20% Similarity=0.272 Sum_probs=36.2
Q ss_pred CCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeec
Q 013178 245 RDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVS 285 (448)
Q Consensus 245 ~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p 285 (448)
.|++++++++|++|+.+++++.|.+.+|+++.+|.||+++.
T Consensus 231 ~gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G 271 (466)
T PRK07845 231 RGMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVG 271 (466)
T ss_pred CCcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeec
Confidence 48999999999999887777888888888999999999975
No 286
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.61 E-value=0.00094 Score=65.87 Aligned_cols=34 Identities=26% Similarity=0.399 Sum_probs=31.4
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
..+|+|||||.+|+.+|..|++.|. +|+|+|+++
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~-~Vtli~~~~ 190 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGS-KVTVLDAAS 190 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-eEEEEecCC
Confidence 4689999999999999999999999 799999864
No 287
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.61 E-value=6e-05 Score=75.82 Aligned_cols=38 Identities=32% Similarity=0.504 Sum_probs=34.7
Q ss_pred CCCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 23 TSPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 23 ~~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
.+..++|+||||+|.+|...|.+|++.|+ +|+|||+..
T Consensus 3 ~~~~~~D~vIVGsG~aG~~lA~rLs~~g~-~VllLEaG~ 40 (542)
T COG2303 3 EMKMEYDYVIVGSGSAGSVLAARLSDAGL-SVLVLEAGG 40 (542)
T ss_pred cccCCCCEEEECCCchhHHHHHHhcCCCC-eEEEEeCCC
Confidence 45678999999999999999999999999 899999963
No 288
>PRK07846 mycothione reductase; Reviewed
Probab=97.61 E-value=0.0008 Score=66.46 Aligned_cols=40 Identities=25% Similarity=0.367 Sum_probs=35.5
Q ss_pred CCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeec
Q 013178 246 DPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVS 285 (448)
Q Consensus 246 g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p 285 (448)
+++++++++|++|+.+++++.|.+.+|+++.+|.||+|+.
T Consensus 220 ~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G 259 (451)
T PRK07846 220 RWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATG 259 (451)
T ss_pred CeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEEC
Confidence 6789999999999987777888888888999999999986
No 289
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.60 E-value=0.001 Score=65.80 Aligned_cols=41 Identities=12% Similarity=0.161 Sum_probs=34.2
Q ss_pred CCCceecCceeEEEEecCCc-EEEEeCCC-cEEEeCEEEEeec
Q 013178 245 RDPRLKLNKVVRNISYSKDK-VTVKTEDG-SVYQANYAIVSVS 285 (448)
Q Consensus 245 ~g~~i~~~~~V~~I~~~~~~-v~V~~~~g-~~~~ad~VI~a~p 285 (448)
.|+++++++.|++|+.++++ +.|.+.+| .++.+|.||+++.
T Consensus 220 ~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G 262 (450)
T TIGR01421 220 EGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIG 262 (450)
T ss_pred cCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeC
Confidence 48999999999999876544 67777777 5799999999986
No 290
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.59 E-value=9e-05 Score=73.21 Aligned_cols=41 Identities=24% Similarity=0.387 Sum_probs=36.3
Q ss_pred CCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeec
Q 013178 245 RDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVS 285 (448)
Q Consensus 245 ~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p 285 (448)
.++++++++.|++|+.+++++.|++.+|+++.+|.||++++
T Consensus 222 ~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G 262 (452)
T TIGR03452 222 KKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATG 262 (452)
T ss_pred cCCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeec
Confidence 37899999999999987777888887888899999999996
No 291
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.55 E-value=0.001 Score=66.08 Aligned_cols=34 Identities=35% Similarity=0.492 Sum_probs=31.0
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
..+|+|||||.+|+-+|..|++.|. +|+|+|+.+
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~-~Vtlv~~~~ 205 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGV-DVTIVEFLD 205 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCC-eEEEEecCC
Confidence 4689999999999999999999999 799999753
No 292
>PRK07846 mycothione reductase; Reviewed
Probab=97.55 E-value=8.5e-05 Score=73.33 Aligned_cols=40 Identities=23% Similarity=0.310 Sum_probs=34.1
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEEc
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKG 70 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~ 70 (448)
+|||+|||||++|.+||.. +.|. +|+|+|+. .+||.|-..
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~-~V~lie~~-~~GGtC~n~ 40 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADK-RIAIVEKG-TFGGTCLNV 40 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCC-eEEEEeCC-CCCCcccCc
Confidence 4899999999999999876 4699 79999984 789987664
No 293
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.53 E-value=0.0011 Score=65.96 Aligned_cols=34 Identities=26% Similarity=0.469 Sum_probs=31.3
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
..+|+|||||.+|+-+|..|++.|. +|+|+|+++
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~-~Vtli~~~~ 216 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGA-EVTILEALP 216 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-eEEEEeCCC
Confidence 4699999999999999999999999 799999864
No 294
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.51 E-value=0.00042 Score=73.11 Aligned_cols=40 Identities=18% Similarity=0.184 Sum_probs=33.9
Q ss_pred CCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeech
Q 013178 245 RDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSI 286 (448)
Q Consensus 245 ~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~ 286 (448)
.|++++++++|++|+.+.. .|.+.+|.++.||++|+|+..
T Consensus 67 ~gv~~~~g~~V~~Id~~~k--~V~~~~g~~~~yD~LVlATGs 106 (785)
T TIGR02374 67 HGITLYTGETVIQIDTDQK--QVITDAGRTLSYDKLILATGS 106 (785)
T ss_pred CCCEEEcCCeEEEEECCCC--EEEECCCcEeeCCEEEECCCC
Confidence 4889999999999988754 466778889999999999964
No 295
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.50 E-value=0.0016 Score=64.90 Aligned_cols=34 Identities=32% Similarity=0.576 Sum_probs=31.4
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
..+|+|||||.+|+-+|..|++.|. +|+|+|+.+
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~-~Vtli~~~~ 213 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGV-EVTVVEAAD 213 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC-eEEEEEecC
Confidence 4689999999999999999999999 799999864
No 296
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.48 E-value=0.0019 Score=63.83 Aligned_cols=40 Identities=20% Similarity=0.297 Sum_probs=34.5
Q ss_pred CCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeec
Q 013178 245 RDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVS 285 (448)
Q Consensus 245 ~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p 285 (448)
.|+++++++.|++|+.+++++.+.+.++ ++.+|.||+|+.
T Consensus 212 ~gV~v~~~~~v~~i~~~~~~v~v~~~~g-~i~~D~vl~a~G 251 (441)
T PRK08010 212 QGVDIILNAHVERISHHENQVQVHSEHA-QLAVDALLIASG 251 (441)
T ss_pred CCCEEEeCCEEEEEEEcCCEEEEEEcCC-eEEeCEEEEeec
Confidence 4899999999999998777788877666 699999999975
No 297
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.48 E-value=0.0017 Score=64.53 Aligned_cols=34 Identities=26% Similarity=0.489 Sum_probs=31.4
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
..+|+|||||.+|+-+|..|++.|. +|+|+|+.+
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~-~Vtli~~~~ 199 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGS-EVTILQRSD 199 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-cEEEEEcCC
Confidence 4789999999999999999999999 799999864
No 298
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=97.47 E-value=4.8e-05 Score=67.07 Aligned_cols=41 Identities=34% Similarity=0.528 Sum_probs=36.1
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcC------CCcEEEEecCCCCCce
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAG------YKDFIILEASSRVGGR 66 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G------~~~V~vlE~~~~~GGr 66 (448)
...++|+|||||+.|.++||+|++.+ . .|+|+|++...||.
T Consensus 8 ~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~-~ItifEs~~IA~ga 54 (380)
T KOG2852|consen 8 GNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGEL-DITIFESKEIAGGA 54 (380)
T ss_pred CCceEEEEECCCceeeeeehhhhcCCccCCCce-eEEEEeeccccccc
Confidence 34589999999999999999999987 5 79999998877773
No 299
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.47 E-value=0.0018 Score=64.02 Aligned_cols=36 Identities=25% Similarity=0.405 Sum_probs=32.5
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRV 63 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~ 63 (448)
..+|+|||||..|+-.|..|++.|. +|+|+|+.+++
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~-~Vtli~~~~~l 204 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGT-RVTIVNRSTKL 204 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCC-cEEEEEccCcc
Confidence 4689999999999999999999999 79999987544
No 300
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=97.47 E-value=0.0002 Score=65.73 Aligned_cols=44 Identities=30% Similarity=0.362 Sum_probs=39.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHHc--CCCcEEEEecCCCCCceEEEc
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEA--GYKDFIILEASSRVGGRLHKG 70 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~--G~~~V~vlE~~~~~GGr~~s~ 70 (448)
..+.|+|||+|+||+.+|+.|.++ +. +|.|+|+...++|.++..
T Consensus 19 ~~p~vcIVGsGPAGfYtA~~LLk~~~~~-~Vdi~Ek~PvPFGLvRyG 64 (468)
T KOG1800|consen 19 STPRVCIVGSGPAGFYTAQHLLKRHPNA-HVDIFEKLPVPFGLVRYG 64 (468)
T ss_pred CCceEEEECCCchHHHHHHHHHhcCCCC-eeEeeecCCcccceeeec
Confidence 344999999999999999999995 56 799999999999988764
No 301
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.47 E-value=0.002 Score=63.92 Aligned_cols=34 Identities=29% Similarity=0.459 Sum_probs=31.1
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
..+|+|||||.+|+-+|..|++.|. +|+|+|+.+
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~-~Vtli~~~~ 203 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGT-KVTIVEMAP 203 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCC-eEEEEecCC
Confidence 4689999999999999999999999 799999864
No 302
>PRK06370 mercuric reductase; Validated
Probab=97.46 E-value=0.0018 Score=64.31 Aligned_cols=34 Identities=21% Similarity=0.486 Sum_probs=31.5
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
..+|+|||||.+|+-+|..|++.|. +|+|+|+.+
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~-~Vtli~~~~ 204 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGS-EVTVIERGP 204 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC-eEEEEEcCC
Confidence 4789999999999999999999999 799999864
No 303
>PLN02785 Protein HOTHEAD
Probab=97.43 E-value=0.00018 Score=72.99 Aligned_cols=35 Identities=29% Similarity=0.530 Sum_probs=31.7
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
...||+||||||.+|+.+|.+|++ +. +|+|||+..
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~-~~-~VLllE~G~ 87 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ-NF-SVLLLERGG 87 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc-CC-cEEEEecCC
Confidence 447999999999999999999999 57 799999964
No 304
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.43 E-value=0.0021 Score=63.83 Aligned_cols=35 Identities=17% Similarity=0.383 Sum_probs=31.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
...+|+|||||..|+-.|..|++.|. +|+|+|+.+
T Consensus 173 ~~~~vvIIGgG~ig~E~A~~l~~~G~-~Vtlie~~~ 207 (466)
T PRK06115 173 VPKHLVVIGAGVIGLELGSVWRRLGA-QVTVVEYLD 207 (466)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC-eEEEEeCCC
Confidence 35789999999999999999999999 799999864
No 305
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.42 E-value=0.00056 Score=62.11 Aligned_cols=81 Identities=15% Similarity=0.213 Sum_probs=59.9
Q ss_pred ccCCCCCCCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEEceeCCceeeecceeccCCCCCCCHHHH
Q 013178 17 TLVIAPTSPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNIGGHTIELGANWVNSGGPKSSPSLQ 96 (448)
Q Consensus 17 ~~~~~~~~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~ 96 (448)
.+..++...+.+|..|||||-.|+++|++.++.|. +|.|+|..-++||.|-....=... .+|+.. .+....+
T Consensus 10 ~~~~~a~~~k~fDylvIGgGSGGvasARrAa~~GA-kv~l~E~~f~lGGTCVn~GCVPKK----vm~~~a---~~~~~~~ 81 (478)
T KOG0405|consen 10 EIDKMAADVKDFDYLVIGGGSGGVASARRAASHGA-KVALCELPFGLGGTCVNVGCVPKK----VMWYAA---DYSEEME 81 (478)
T ss_pred CCCcccccccccceEEEcCCcchhHHhHHHHhcCc-eEEEEecCCCcCceEEeeccccce----eEEehh---hhhHHhh
Confidence 34455566779999999999999999999999999 799999998999998775321111 134433 4455556
Q ss_pred HHHHcCCce
Q 013178 97 IAKKIKLKT 105 (448)
Q Consensus 97 l~~~lgl~~ 105 (448)
-.+++|++.
T Consensus 82 da~~yG~~~ 90 (478)
T KOG0405|consen 82 DAKDYGFPI 90 (478)
T ss_pred hhhhcCCcc
Confidence 667777764
No 306
>PRK14727 putative mercuric reductase; Provisional
Probab=97.39 E-value=0.0027 Score=63.39 Aligned_cols=41 Identities=12% Similarity=0.115 Sum_probs=35.0
Q ss_pred CCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeech
Q 013178 245 RDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSI 286 (448)
Q Consensus 245 ~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~ 286 (448)
.|++++++++|++|+.+++++.|.+.++ ++.+|.||+|++.
T Consensus 241 ~GV~i~~~~~V~~i~~~~~~~~v~~~~g-~i~aD~VlvA~G~ 281 (479)
T PRK14727 241 EGIEVLNNTQASLVEHDDNGFVLTTGHG-ELRAEKLLISTGR 281 (479)
T ss_pred CCCEEEcCcEEEEEEEeCCEEEEEEcCC-eEEeCEEEEccCC
Confidence 4889999999999998777787877666 7999999999863
No 307
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.38 E-value=0.0015 Score=69.01 Aligned_cols=41 Identities=17% Similarity=0.250 Sum_probs=35.4
Q ss_pred CCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeec
Q 013178 245 RDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVS 285 (448)
Q Consensus 245 ~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p 285 (448)
.|++|++++.|++|..++....|.+.+|+++.+|.||++++
T Consensus 195 ~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G 235 (785)
T TIGR02374 195 KGLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAG 235 (785)
T ss_pred cCCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCC
Confidence 48999999999999876555668888998999999999986
No 308
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=97.37 E-value=0.00015 Score=73.35 Aligned_cols=32 Identities=34% Similarity=0.514 Sum_probs=30.2
Q ss_pred cEEEECCChHHHHHHHHHHHcC-CCcEEEEecCC
Q 013178 29 SVIIVGAGMSGFMAAKTLEEAG-YKDFIILEASS 61 (448)
Q Consensus 29 dViIIGaGiaGL~aA~~L~~~G-~~~V~vlE~~~ 61 (448)
|+||||||.+|+.+|.+|+++| . +|+|||+..
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~-~VlvlEaG~ 33 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSN-SVLVLEAGG 33 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCC-eEEEEecCC
Confidence 8999999999999999999998 7 799999975
No 309
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=97.36 E-value=0.0012 Score=60.60 Aligned_cols=70 Identities=24% Similarity=0.315 Sum_probs=49.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHHc----CCCcEEEEecCCCCCceEEEcee--CCceeeecceeccCCCCCCCHHHHHHH
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEA----GYKDFIILEASSRVGGRLHKGNI--GGHTIELGANWVNSGGPKSSPSLQIAK 99 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~----G~~~V~vlE~~~~~GGr~~s~~~--~g~~~d~G~~~~~~~~~~~~~~~~l~~ 99 (448)
..+.+-|||+|+|||++|..|-+. |. ++-|+|--...||....... .|+.. .|++-+-. ....+|.+++
T Consensus 21 dqKsaY~vG~GlAsLA~AvfLIRDg~m~G~-~IHilEelpl~GGSlDG~~~p~~GfV~-RGGRemEn---hfEc~WDlfr 95 (587)
T COG4716 21 DQKSAYIVGGGLASLAAAVFLIRDGQMDGK-RIHILEELPLAGGSLDGAGSPHHGFVV-RGGREMEN---HFECLWDLFR 95 (587)
T ss_pred ccceeEEEccchHhhhheeEEEeccccCCc-eeEeeecCcccCCCCCCCCCcccceee-cCcHHHHH---HHHHHHHHHh
Confidence 356799999999999999999885 55 89999999999997765432 23333 34333322 3455666665
Q ss_pred H
Q 013178 100 K 100 (448)
Q Consensus 100 ~ 100 (448)
.
T Consensus 96 s 96 (587)
T COG4716 96 S 96 (587)
T ss_pred c
Confidence 5
No 310
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.35 E-value=0.00027 Score=68.66 Aligned_cols=38 Identities=26% Similarity=0.579 Sum_probs=33.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCC-cEEEEecCCCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYK-DFIILEASSRV 63 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~-~V~vlE~~~~~ 63 (448)
++.+|+|||||+||++||..|++.|.+ +|+|+++.+..
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~ 40 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHL 40 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCC
Confidence 346899999999999999999999875 79999997654
No 311
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=97.34 E-value=0.0025 Score=62.69 Aligned_cols=34 Identities=29% Similarity=0.556 Sum_probs=30.9
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
..+|+|||||.+|+-+|..|++.|. +|+++++.+
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~~g~-~Vtli~~~~ 170 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRERGK-NVTLIHRSE 170 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCC-cEEEEECCc
Confidence 4689999999999999999999999 799999753
No 312
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.34 E-value=0.0026 Score=62.94 Aligned_cols=34 Identities=24% Similarity=0.502 Sum_probs=30.8
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
..+|+|||||.+|+-+|..|++.|. +|+++|+.+
T Consensus 149 ~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtli~~~~ 182 (444)
T PRK09564 149 IKNIVIIGAGFIGLEAVEAAKHLGK-NVRIIQLED 182 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCC-cEEEEeCCc
Confidence 4689999999999999999999999 799998753
No 313
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.32 E-value=0.00028 Score=69.46 Aligned_cols=37 Identities=27% Similarity=0.428 Sum_probs=31.8
Q ss_pred CcEEEECCChHHHHHHHHHHHcCCC-cEEEEecCCCCC
Q 013178 28 NSVIIVGAGMSGFMAAKTLEEAGYK-DFIILEASSRVG 64 (448)
Q Consensus 28 ~dViIIGaGiaGL~aA~~L~~~G~~-~V~vlE~~~~~G 64 (448)
.+|+|||||.+|++||..|++.+.+ +|+|+|+++.++
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~ 39 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS 39 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc
Confidence 4899999999999999999987432 799999987654
No 314
>PRK14694 putative mercuric reductase; Provisional
Probab=97.32 E-value=0.0035 Score=62.38 Aligned_cols=40 Identities=13% Similarity=0.251 Sum_probs=33.7
Q ss_pred CCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeec
Q 013178 245 RDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVS 285 (448)
Q Consensus 245 ~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p 285 (448)
.|+++++++.|++|+.+++.+.+.+.++ ++.+|.||+|+.
T Consensus 231 ~GI~v~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G 270 (468)
T PRK14694 231 EGIEVLKQTQASEVDYNGREFILETNAG-TLRAEQLLVATG 270 (468)
T ss_pred CCCEEEeCCEEEEEEEcCCEEEEEECCC-EEEeCEEEEccC
Confidence 4899999999999988776677776655 799999999985
No 315
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=97.30 E-value=0.0017 Score=61.69 Aligned_cols=56 Identities=11% Similarity=0.160 Sum_probs=45.5
Q ss_pred CCchHHHHHHHHHhhhcccccccCCCceecCceeEEEEecCCcEEEEeCCC-cEEEeCEEEEeec
Q 013178 222 PRGFESVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVTVKTEDG-SVYQANYAIVSVS 285 (448)
Q Consensus 222 ~~G~~~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~g-~~~~ad~VI~a~p 285 (448)
..-.+++++.|...+.+ .|++|+++++|++| +++++.|.+.++ ..++||+||+|+.
T Consensus 82 S~~A~sVv~~L~~~l~~------~gV~i~~~~~V~~i--~~~~~~v~~~~~~~~~~a~~vIlAtG 138 (376)
T TIGR03862 82 EMKAAPLLRAWLKRLAE------QGVQFHTRHRWIGW--QGGTLRFETPDGQSTIEADAVVLALG 138 (376)
T ss_pred CCCHHHHHHHHHHHHHH------CCCEEEeCCEEEEE--eCCcEEEEECCCceEEecCEEEEcCC
Confidence 45677899999998877 69999999999999 334577776543 4799999999995
No 316
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.28 E-value=0.0041 Score=62.31 Aligned_cols=33 Identities=33% Similarity=0.502 Sum_probs=30.1
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
..+|+|||||..|+-.|..|++.|. +|+|++++
T Consensus 182 ~~~vvIIGgG~iG~E~A~~l~~~G~-~Vtli~~~ 214 (499)
T PTZ00052 182 PGKTLIVGASYIGLETAGFLNELGF-DVTVAVRS 214 (499)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-cEEEEEcC
Confidence 3589999999999999999999999 79999863
No 317
>PRK13748 putative mercuric reductase; Provisional
Probab=97.27 E-value=0.0036 Score=63.95 Aligned_cols=40 Identities=10% Similarity=0.150 Sum_probs=34.3
Q ss_pred CCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeec
Q 013178 245 RDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVS 285 (448)
Q Consensus 245 ~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p 285 (448)
.|++|++++.|++|+.+++.+.+.+.++ ++.+|.||+|+.
T Consensus 323 ~gI~i~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G 362 (561)
T PRK13748 323 EGIEVLEHTQASQVAHVDGEFVLTTGHG-ELRADKLLVATG 362 (561)
T ss_pred CCCEEEcCCEEEEEEecCCEEEEEecCC-eEEeCEEEEccC
Confidence 4899999999999998777777777666 799999999985
No 318
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.27 E-value=0.0044 Score=61.67 Aligned_cols=41 Identities=12% Similarity=0.238 Sum_probs=34.3
Q ss_pred CCCceecCceeEEEEecCCc-EEEEeCCCcEEEeCEEEEeec
Q 013178 245 RDPRLKLNKVVRNISYSKDK-VTVKTEDGSVYQANYAIVSVS 285 (448)
Q Consensus 245 ~g~~i~~~~~V~~I~~~~~~-v~V~~~~g~~~~ad~VI~a~p 285 (448)
.|+++++++.|++|+.++++ +.|.+.+|+++.+|.||+++.
T Consensus 244 ~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G 285 (486)
T TIGR01423 244 NGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIG 285 (486)
T ss_pred cCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeC
Confidence 48999999999999876544 567777787899999999885
No 319
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.00027 Score=64.09 Aligned_cols=46 Identities=24% Similarity=0.361 Sum_probs=38.0
Q ss_pred CCCCCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEE
Q 013178 21 APTSPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHK 69 (448)
Q Consensus 21 ~~~~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s 69 (448)
.-..+..|||+|||||++|-+||.+.+++|. +.-|+ ..|+||++.-
T Consensus 205 ~~~~k~~yDVLvVGgGPAgaaAAiYaARKGi-RTGl~--aerfGGQvld 250 (520)
T COG3634 205 EFNAKDAYDVLVVGGGPAGAAAAIYAARKGI-RTGLV--AERFGGQVLD 250 (520)
T ss_pred HhhccCCceEEEEcCCcchhHHHHHHHhhcc-hhhhh--hhhhCCeecc
Confidence 3445678999999999999999999999999 66665 3589998753
No 320
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.20 E-value=0.00035 Score=62.93 Aligned_cols=38 Identities=26% Similarity=0.432 Sum_probs=33.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVG 64 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~G 64 (448)
+...|.|||||+||.-|||+++++|+ .|.++|.+..-+
T Consensus 2 ~~~~i~VIGaGLAGSEAAwqiA~~Gv-~V~L~EMRp~k~ 39 (439)
T COG1206 2 MQQPINVIGAGLAGSEAAWQIAKRGV-PVILYEMRPVKG 39 (439)
T ss_pred CCCceEEEcccccccHHHHHHHHcCC-cEEEEEcccccC
Confidence 34579999999999999999999999 799999976444
No 321
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.18 E-value=0.00046 Score=67.69 Aligned_cols=38 Identities=16% Similarity=0.441 Sum_probs=33.1
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCC
Q 013178 24 SPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSR 62 (448)
Q Consensus 24 ~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~ 62 (448)
..++++|+|||||.+|+.+|..|.+.+. +|+|+|+++.
T Consensus 7 ~~~~~~vVIvGgG~aGl~~a~~L~~~~~-~ItlI~~~~~ 44 (424)
T PTZ00318 7 RLKKPNVVVLGTGWAGAYFVRNLDPKKY-NITVISPRNH 44 (424)
T ss_pred CCCCCeEEEECCCHHHHHHHHHhCcCCC-eEEEEcCCCC
Confidence 3456799999999999999999987778 7999998764
No 322
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.08 E-value=0.00079 Score=65.02 Aligned_cols=35 Identities=23% Similarity=0.464 Sum_probs=30.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCC-cEEEEecCC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYK-DFIILEASS 61 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~-~V~vlE~~~ 61 (448)
+++|+|||||+||+++|..|++.+.+ +|+|+++++
T Consensus 2 ~~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~ 37 (377)
T PRK04965 2 SNGIVIIGSGFAARQLVKNIRKQDAHIPITLITADS 37 (377)
T ss_pred CCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCC
Confidence 35999999999999999999987654 799999876
No 323
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.07 E-value=0.0091 Score=59.56 Aligned_cols=41 Identities=15% Similarity=0.152 Sum_probs=33.5
Q ss_pred CCCceecCceeEEEEecCCcEEEEeCCC---cEEEeCEEEEeec
Q 013178 245 RDPRLKLNKVVRNISYSKDKVTVKTEDG---SVYQANYAIVSVS 285 (448)
Q Consensus 245 ~g~~i~~~~~V~~I~~~~~~v~V~~~~g---~~~~ad~VI~a~p 285 (448)
.|++|++++.+++|+..++++.|+..++ +++.+|.||+|+.
T Consensus 233 ~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G 276 (484)
T TIGR01438 233 HGVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIG 276 (484)
T ss_pred cCCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEec
Confidence 4899999999999988766666665554 3799999999986
No 324
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.05 E-value=0.11 Score=52.59 Aligned_cols=56 Identities=20% Similarity=0.151 Sum_probs=41.9
Q ss_pred HHHHHHHHHhhhcccccccCCCceecCceeEEEEecCCcEE-EEe---CCC--cEEEeCEEEEeechh
Q 013178 226 ESVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVT-VKT---EDG--SVYQANYAIVSVSIG 287 (448)
Q Consensus 226 ~~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~-V~~---~~g--~~~~ad~VI~a~p~~ 287 (448)
..++.++++.+.+ .|++|+++++|++|..+++++. |.+ .+| .+++|+.||+|+.+-
T Consensus 128 ~~l~~al~~~A~~------~Ga~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~w 189 (516)
T TIGR03377 128 FRLVAANVLDAQE------HGARIFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQVVINAAGIW 189 (516)
T ss_pred HHHHHHHHHHHHH------cCCEEEcCcEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcc
Confidence 4566667776655 6999999999999998877643 443 234 378999999999753
No 325
>PTZ00058 glutathione reductase; Provisional
Probab=97.05 E-value=0.0085 Score=60.57 Aligned_cols=34 Identities=15% Similarity=0.260 Sum_probs=31.4
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
..+|+|||||..|+-.|..|++.|. +|+|+|+++
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~-~Vtli~~~~ 270 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGA-ESYIFARGN 270 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCC-cEEEEEecc
Confidence 5789999999999999999999999 799999864
No 326
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.0013 Score=59.50 Aligned_cols=34 Identities=24% Similarity=0.426 Sum_probs=32.1
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEec
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEA 59 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~ 59 (448)
...||.||||||-+||+||.+.+..|. +|.+||.
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~~G~-kV~~lDf 50 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAADLGA-KVACLDF 50 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHhcCC-cEEEEee
Confidence 568999999999999999999999999 7999997
No 327
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=96.98 E-value=0.00083 Score=65.65 Aligned_cols=60 Identities=27% Similarity=0.462 Sum_probs=48.3
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEEceeCCceeeecceeccCCCCCCCHHHHHHHHcCCce
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNIGGHTIELGANWVNSGGPKSSPSLQIAKKIKLKT 105 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~l~~~lgl~~ 105 (448)
..+|+|||+|..||.+|..|++.|+ +|+++|+.+++||+... .. ....+.+++++.|++.
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~-~v~l~e~~~~~~~~~~~---------------~~---~~~~~~~~l~~~gi~~ 195 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGK-KVTLIEAADRLGGQLLD---------------PE---VAEELAELLEKYGVEL 195 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCC-eEEEEEcccccchhhhh---------------HH---HHHHHHHHHHHCCcEE
Confidence 5799999999999999999999999 89999999999985542 11 2345667777777554
No 328
>PLN02546 glutathione reductase
Probab=96.79 E-value=0.02 Score=57.96 Aligned_cols=35 Identities=17% Similarity=0.227 Sum_probs=31.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
...+|+|||||..|+-.|..|++.|. +|+|+|+.+
T Consensus 251 ~~k~V~VIGgG~iGvE~A~~L~~~g~-~Vtlv~~~~ 285 (558)
T PLN02546 251 KPEKIAIVGGGYIALEFAGIFNGLKS-DVHVFIRQK 285 (558)
T ss_pred cCCeEEEECCCHHHHHHHHHHHhcCC-eEEEEEecc
Confidence 34699999999999999999999999 799999764
No 329
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=96.75 E-value=0.0077 Score=57.20 Aligned_cols=61 Identities=15% Similarity=0.185 Sum_probs=46.0
Q ss_pred eeCCCchHHHHHHHHHhhhcccccccCCCceecCceeEEE-EecCCc---EEEEeCC--C-cEEEeCEEEEeechhhc
Q 013178 219 VADPRGFESVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNI-SYSKDK---VTVKTED--G-SVYQANYAIVSVSIGVL 289 (448)
Q Consensus 219 ~~~~~G~~~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I-~~~~~~---v~V~~~~--g-~~~~ad~VI~a~p~~~l 289 (448)
...+||..++++.|.+. .++++ +|+.|++| ...+++ +.|.+.+ + ..-.+|.||+|+|++.-
T Consensus 121 ~sV~GGN~qI~~~ll~~---------S~A~v-l~~~Vt~I~~~~~~~~~~y~v~~~~~~~~~~~~yD~VVIAtPl~~~ 188 (368)
T PF07156_consen 121 WSVEGGNWQIFEGLLEA---------SGANV-LNTTVTSITRRSSDGYSLYEVTYKSSSGTESDEYDIVVIATPLQQS 188 (368)
T ss_pred eEecCCHHHHHHHHHHH---------ccCcE-ecceeEEEEeccCCCceeEEEEEecCCCCccccCCEEEECCCcccc
Confidence 34589999999999998 58899 99999999 444433 4565544 2 23467999999999643
No 330
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=96.73 E-value=0.019 Score=56.40 Aligned_cols=37 Identities=16% Similarity=0.236 Sum_probs=31.1
Q ss_pred CCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeec
Q 013178 245 RDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVS 285 (448)
Q Consensus 245 ~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p 285 (448)
.|++|+++++|++|..+ .|.+++|+++.+|.||.+++
T Consensus 241 ~gV~v~~~~~v~~v~~~----~v~~~~g~~i~~d~vi~~~G 277 (424)
T PTZ00318 241 LGVDIRTKTAVKEVLDK----EVVLKDGEVIPTGLVVWSTG 277 (424)
T ss_pred CCCEEEeCCeEEEEeCC----EEEECCCCEEEccEEEEccC
Confidence 48999999999999753 35577888999999999976
No 331
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=96.70 E-value=0.0035 Score=58.54 Aligned_cols=35 Identities=29% Similarity=0.476 Sum_probs=30.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHc----CCCcEEEEecC
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEA----GYKDFIILEAS 60 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~----G~~~V~vlE~~ 60 (448)
+..+||+|||||+.|++.|..|... .+ +|.|+|..
T Consensus 34 ~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~-kv~Lld~~ 72 (481)
T KOG3855|consen 34 TAKYDVVIVGGGPVGLALAAALGSNPPFQDK-KVLLLDAG 72 (481)
T ss_pred cccCCEEEECCchHHHHHHHHhccCCccchh-eeeEEecc
Confidence 4589999999999999999999964 34 79999997
No 332
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=96.58 E-value=0.0031 Score=60.10 Aligned_cols=36 Identities=22% Similarity=0.444 Sum_probs=32.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcC--CCcEEEEecCCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAG--YKDFIILEASSR 62 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G--~~~V~vlE~~~~ 62 (448)
++++|+|||||.+||.+|..|.++- . +|+++|+++.
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~-~itLVd~~~~ 39 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKLPDV-EITLVDRRDY 39 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcCCCC-cEEEEeCCCc
Confidence 4679999999999999999999974 7 8999999864
No 333
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=96.37 E-value=0.0034 Score=60.28 Aligned_cols=37 Identities=14% Similarity=0.098 Sum_probs=31.4
Q ss_pred CCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeec
Q 013178 245 RDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVS 285 (448)
Q Consensus 245 ~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p 285 (448)
.|+++++++.|++|+.+ .|.+.+|.++.+|.||+|++
T Consensus 204 ~gV~v~~~~~v~~i~~~----~v~~~~g~~i~~D~vi~a~G 240 (364)
T TIGR03169 204 RGIEVHEGAPVTRGPDG----ALILADGRTLPADAILWATG 240 (364)
T ss_pred CCCEEEeCCeeEEEcCC----eEEeCCCCEEecCEEEEccC
Confidence 59999999999998643 46667888999999999987
No 334
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=96.23 E-value=0.0053 Score=51.04 Aligned_cols=31 Identities=23% Similarity=0.389 Sum_probs=29.1
Q ss_pred cEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 29 SVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 29 dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
+|+|||||-.|.++|..|++.|+ +|+|+.++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~-~V~l~~~~ 31 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGH-EVTLWGRD 31 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTE-EEEEETSC
T ss_pred CEEEECcCHHHHHHHHHHHHcCC-EEEEEecc
Confidence 58999999999999999999999 89999875
No 335
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=96.22 E-value=0.11 Score=49.05 Aligned_cols=41 Identities=20% Similarity=0.233 Sum_probs=30.1
Q ss_pred CCceecCceeEEEEecCC-cEEEEeCC---C--cEEEeCEEEEeech
Q 013178 246 DPRLKLNKVVRNISYSKD-KVTVKTED---G--SVYQANYAIVSVSI 286 (448)
Q Consensus 246 g~~i~~~~~V~~I~~~~~-~v~V~~~~---g--~~~~ad~VI~a~p~ 286 (448)
..+|+.+++|++++..++ ++.+.+.+ | .++++|.||+||..
T Consensus 293 ~~~l~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~D~VilATGy 339 (341)
T PF13434_consen 293 RLRLLPNTEVTSAEQDGDGGVRLTLRHRQTGEEETLEVDAVILATGY 339 (341)
T ss_dssp -SEEETTEEEEEEEEES-SSEEEEEEETTT--EEEEEESEEEE---E
T ss_pred CeEEeCCCEEEEEEECCCCEEEEEEEECCCCCeEEEecCEEEEcCCc
Confidence 578999999999999884 78877765 2 46899999999964
No 336
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=0.012 Score=50.38 Aligned_cols=44 Identities=25% Similarity=0.404 Sum_probs=37.6
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEec----CCCCCceEEEce
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEA----SSRVGGRLHKGN 71 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~----~~~~GGr~~s~~ 71 (448)
+.+|+|||+|+++-+||.+++++.. +.+|||- +--.||++.+..
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaarael-kPllfEG~~~~~i~pGGQLtTTT 55 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAEL-KPLLFEGMMANGIAPGGQLTTTT 55 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhccc-CceEEeeeeccCcCCCceeeeee
Confidence 4589999999999999999999999 6999996 334589988753
No 337
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.16 E-value=0.0073 Score=57.47 Aligned_cols=36 Identities=25% Similarity=0.449 Sum_probs=31.8
Q ss_pred CCCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEec
Q 013178 23 TSPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEA 59 (448)
Q Consensus 23 ~~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~ 59 (448)
.....|||||||||.||.-||...++.|. +.+++-.
T Consensus 24 s~~~~~dVvVIGgGHAG~EAAaAaaR~Ga-~TlLlT~ 59 (679)
T KOG2311|consen 24 SSTSTYDVVVIGGGHAGCEAAAAAARLGA-RTLLLTH 59 (679)
T ss_pred cCCCcccEEEECCCccchHHHHHHHhcCC-ceEEeec
Confidence 33778999999999999999999999999 6777765
No 338
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=96.11 E-value=0.0052 Score=54.89 Aligned_cols=34 Identities=18% Similarity=0.322 Sum_probs=27.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCC----C--cEEEEec
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGY----K--DFIILEA 59 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~----~--~V~vlE~ 59 (448)
++.+|+|||+|+.||++|..+.+.+. . +|+|++-
T Consensus 2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~D 41 (342)
T KOG3923|consen 2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISD 41 (342)
T ss_pred CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecC
Confidence 46799999999999999999998542 1 6777763
No 339
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.02 E-value=0.0088 Score=59.77 Aligned_cols=36 Identities=31% Similarity=0.523 Sum_probs=32.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSR 62 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~ 62 (448)
...+|+|||+|.+|+++|..|++.|. +|+++|+++.
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~-~V~~~d~~~~ 50 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGA-RVTVVDDGDD 50 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCch
Confidence 34589999999999999999999999 7999997653
No 340
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=95.93 E-value=0.0088 Score=59.45 Aligned_cols=39 Identities=31% Similarity=0.491 Sum_probs=33.8
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHc-CCCcEEEEecCCCC
Q 013178 24 SPPSNSVIIVGAGMSGFMAAKTLEEA-GYKDFIILEASSRV 63 (448)
Q Consensus 24 ~~~~~dViIIGaGiaGL~aA~~L~~~-G~~~V~vlE~~~~~ 63 (448)
....||.||||||-||...|.+|++. .. +|+|||+....
T Consensus 54 ~~~~yDyIVVGgGtAGcvlAarLSEn~~~-~VLLLEaGg~~ 93 (623)
T KOG1238|consen 54 LDSSYDYIVVGGGTAGCVLAARLSENPNW-SVLLLEAGGDP 93 (623)
T ss_pred cccCCCEEEECCCchhHHHHHhhccCCCc-eEEEEecCCCC
Confidence 45689999999999999999999996 45 79999996543
No 341
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=95.92 E-value=0.011 Score=50.38 Aligned_cols=31 Identities=32% Similarity=0.547 Sum_probs=27.4
Q ss_pred cEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 29 SVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 29 dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
+|+|||||..|..-|..++..|+ +|+++|.+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~ 31 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY-EVTLYDRS 31 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS-EEEEE-SS
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC-cEEEEECC
Confidence 48999999999999999999999 89999985
No 342
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=95.77 E-value=0.014 Score=56.99 Aligned_cols=38 Identities=26% Similarity=0.470 Sum_probs=34.5
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCC
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRV 63 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~ 63 (448)
..+.+++|||||+.|+=.|..+++.|. +|+|+|+.+++
T Consensus 171 ~lP~~lvIiGgG~IGlE~a~~~~~LG~-~VTiie~~~~i 208 (454)
T COG1249 171 ELPKSLVIVGGGYIGLEFASVFAALGS-KVTVVERGDRI 208 (454)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEecCCCC
Confidence 456789999999999999999999999 79999998755
No 343
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=95.70 E-value=0.012 Score=50.25 Aligned_cols=32 Identities=25% Similarity=0.429 Sum_probs=26.0
Q ss_pred CcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 28 NSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 28 ~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
++|+|||.|..||..|..|+++|+ +|+.+|.+
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~-~V~g~D~~ 32 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGH-QVIGVDID 32 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTS-EEEEE-S-
T ss_pred CEEEEECCCcchHHHHHHHHhCCC-EEEEEeCC
Confidence 479999999999999999999999 89999975
No 344
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.56 E-value=0.015 Score=57.88 Aligned_cols=34 Identities=24% Similarity=0.511 Sum_probs=31.0
Q ss_pred cEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCC
Q 013178 29 SVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRV 63 (448)
Q Consensus 29 dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~ 63 (448)
+|+|||.|.+|+++|+.|.+.|+ +|+++|++...
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~-~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGW-EVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCC-EEEEECCCCch
Confidence 58999999999999999999999 89999987543
No 345
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=95.43 E-value=0.025 Score=46.67 Aligned_cols=30 Identities=37% Similarity=0.616 Sum_probs=27.9
Q ss_pred EEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 30 VIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 30 ViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
|+|||+|..|+..|+.|+++|+ +|.++-++
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~-~V~l~~r~ 30 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGH-DVTLVSRS 30 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTC-EEEEEESH
T ss_pred CEEECcCHHHHHHHHHHHHCCC-ceEEEEcc
Confidence 6899999999999999999999 89999764
No 346
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=95.40 E-value=0.023 Score=56.64 Aligned_cols=37 Identities=16% Similarity=0.365 Sum_probs=33.6
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVG 64 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~G 64 (448)
..+|+|||||..|+-.|..|++.|. +|+|+|+.+++.
T Consensus 174 ~~~vvIiGgG~iG~E~A~~l~~~G~-~Vtlv~~~~~il 210 (471)
T PRK06467 174 PKRLLVMGGGIIGLEMGTVYHRLGS-EVDVVEMFDQVI 210 (471)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-CEEEEecCCCCC
Confidence 4689999999999999999999999 799999987653
No 347
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.35 E-value=0.027 Score=52.47 Aligned_cols=34 Identities=15% Similarity=0.248 Sum_probs=31.0
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
-.+|+|||+|..|..-|..++.+|+ +|+++|.+.
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~ 40 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAP 40 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCH
Confidence 4579999999999999999999999 899999763
No 348
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.32 E-value=0.023 Score=53.06 Aligned_cols=33 Identities=33% Similarity=0.466 Sum_probs=30.5
Q ss_pred CcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 28 NSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 28 ~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
.+|.|||+|..|.+.|..|+++|+ +|++++++.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~-~V~v~d~~~ 35 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGH-EVRLWDADP 35 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCC-eeEEEeCCH
Confidence 379999999999999999999999 899999864
No 349
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=95.29 E-value=0.027 Score=56.01 Aligned_cols=39 Identities=21% Similarity=0.424 Sum_probs=34.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCc
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGG 65 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GG 65 (448)
...+|+|||||.+|+-.|..|++.|. +|+|+|+.+++..
T Consensus 168 ~~k~v~VIGgG~~g~E~A~~l~~~g~-~Vtli~~~~~~l~ 206 (460)
T PRK06292 168 LPKSLAVIGGGVIGLELGQALSRLGV-KVTVFERGDRILP 206 (460)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCC-cEEEEecCCCcCc
Confidence 35789999999999999999999999 7999999877653
No 350
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=95.22 E-value=0.026 Score=55.64 Aligned_cols=37 Identities=22% Similarity=0.420 Sum_probs=33.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVG 64 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~G 64 (448)
..+|+|||||..|+-+|..|++.|. +|+|+|+.+++.
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~~g~-~Vtli~~~~~l~ 184 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYERGL-HPTLIHRSDKIN 184 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC-cEEEEecccccc
Confidence 3689999999999999999999999 799999987664
No 351
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=95.20 E-value=0.028 Score=55.91 Aligned_cols=37 Identities=27% Similarity=0.418 Sum_probs=33.8
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVG 64 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~G 64 (448)
..+|+|||||.+|+-+|..|++.|. +|+|+|+++++.
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~-~Vtli~~~~~~l 211 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGV-KVTLINTRDRLL 211 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCcC
Confidence 4789999999999999999999999 799999987664
No 352
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=95.15 E-value=0.044 Score=44.19 Aligned_cols=36 Identities=25% Similarity=0.409 Sum_probs=31.9
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
-+..+|+|||+|=+|-++++.|.+.|.++|+|+-|+
T Consensus 10 l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 10 LKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp GTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 356899999999999999999999999569999764
No 353
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.15 E-value=0.027 Score=49.83 Aligned_cols=33 Identities=30% Similarity=0.587 Sum_probs=30.7
Q ss_pred CcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 28 NSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 28 ~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
++++|||+|--|.+.|..|.+.|+ +|+++|+++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~-~Vv~Id~d~ 33 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGH-NVVLIDRDE 33 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCC-ceEEEEcCH
Confidence 479999999999999999999999 899999864
No 354
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=95.06 E-value=0.029 Score=50.64 Aligned_cols=44 Identities=34% Similarity=0.502 Sum_probs=38.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC--------CCCCceEEEc
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS--------SRVGGRLHKG 70 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~--------~~~GGr~~s~ 70 (448)
.+-+|+|||||+.|.-+|.-..-.|- +|+++|.+ +.+|||+.+.
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA-~Vtild~n~~rl~~ldd~f~~rv~~~ 218 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGA-DVTILDLNIDRLRQLDDLFGGRVHTL 218 (371)
T ss_pred CCccEEEECCccccchHHHHHhccCC-eeEEEecCHHHHhhhhHhhCceeEEE
Confidence 46789999999999999999999999 89999986 4668887664
No 355
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=94.99 E-value=0.04 Score=46.34 Aligned_cols=36 Identities=25% Similarity=0.431 Sum_probs=30.0
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 24 SPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 24 ~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
.-++.+|+|+|+|.+|+.||..|...|. +|+++|..
T Consensus 17 ~~~p~~vvv~G~G~vg~gA~~~~~~lGa-~v~~~d~~ 52 (168)
T PF01262_consen 17 GVPPAKVVVTGAGRVGQGAAEIAKGLGA-EVVVPDER 52 (168)
T ss_dssp EE-T-EEEEESTSHHHHHHHHHHHHTT--EEEEEESS
T ss_pred CCCCeEEEEECCCHHHHHHHHHHhHCCC-EEEeccCC
Confidence 3456899999999999999999999999 89999864
No 356
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=94.97 E-value=0.018 Score=50.62 Aligned_cols=35 Identities=31% Similarity=0.545 Sum_probs=28.9
Q ss_pred cEEEECCChHHHHHHHHHHHcCCC-cEEEEecCCCC
Q 013178 29 SVIIVGAGMSGFMAAKTLEEAGYK-DFIILEASSRV 63 (448)
Q Consensus 29 dViIIGaGiaGL~aA~~L~~~G~~-~V~vlE~~~~~ 63 (448)
+.+||||||||.+||-.|+..-.. +|+++-+++.+
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~v 36 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFV 36 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHH
Confidence 358999999999999999997544 79999887543
No 357
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=94.94 E-value=0.041 Score=51.56 Aligned_cols=34 Identities=29% Similarity=0.414 Sum_probs=30.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
+..+|+|||+|..|.+.|..|+++|+ +|+++-++
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g~-~V~~~~r~ 37 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAGF-DVHFLLRS 37 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCCC-eEEEEEeC
Confidence 34579999999999999999999999 89999874
No 358
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.86 E-value=0.044 Score=50.78 Aligned_cols=33 Identities=33% Similarity=0.451 Sum_probs=30.5
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
..+|+|||+|..|...|..|+++|+ +|++++.+
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~ 36 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVS 36 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCC
Confidence 3579999999999999999999999 89999975
No 359
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.85 E-value=0.035 Score=51.30 Aligned_cols=32 Identities=31% Similarity=0.437 Sum_probs=30.0
Q ss_pred CcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 28 NSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 28 ~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
.+|+|||+|..|.+.|..|+++|+ +|++++.+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~ 35 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDIS 35 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCC
Confidence 579999999999999999999999 89999975
No 360
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=94.82 E-value=0.029 Score=50.76 Aligned_cols=39 Identities=23% Similarity=0.302 Sum_probs=32.8
Q ss_pred CCCCCCcEEEECCChHHHHHHHHHHHc-CCCcEEEEecCC
Q 013178 23 TSPPSNSVIIVGAGMSGFMAAKTLEEA-GYKDFIILEASS 61 (448)
Q Consensus 23 ~~~~~~dViIIGaGiaGL~aA~~L~~~-G~~~V~vlE~~~ 61 (448)
..+++++|+|||||-+|++.|..+.++ |..+|.|+|-.+
T Consensus 35 ~~~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e 74 (446)
T KOG3851|consen 35 FARKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAE 74 (446)
T ss_pred hcccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchh
Confidence 346899999999999999999999875 433799999865
No 361
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=94.79 E-value=0.035 Score=48.26 Aligned_cols=35 Identities=29% Similarity=0.415 Sum_probs=29.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
+..+|+|||+|.|+.-+|..|++.|. +|+++=+++
T Consensus 166 ~~k~V~VVG~G~SA~d~a~~l~~~g~-~V~~~~R~~ 200 (203)
T PF13738_consen 166 KGKRVVVVGGGNSAVDIAYALAKAGK-SVTLVTRSP 200 (203)
T ss_dssp TTSEEEEE--SHHHHHHHHHHTTTCS-EEEEEESS-
T ss_pred CCCcEEEEcChHHHHHHHHHHHhhCC-EEEEEecCC
Confidence 46899999999999999999999997 899997753
No 362
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.79 E-value=0.04 Score=54.59 Aligned_cols=35 Identities=34% Similarity=0.587 Sum_probs=32.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
+..+|+|||+|.+|+++|..|++.|+ +|+++|++.
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~-~V~~~d~~~ 38 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGA-KVILTDEKE 38 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence 45789999999999999999999999 899999864
No 363
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.74 E-value=0.13 Score=48.56 Aligned_cols=37 Identities=24% Similarity=0.243 Sum_probs=33.1
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHcC-CCcEEEEecCC
Q 013178 24 SPPSNSVIIVGAGMSGFMAAKTLEEAG-YKDFIILEASS 61 (448)
Q Consensus 24 ~~~~~dViIIGaGiaGL~aA~~L~~~G-~~~V~vlE~~~ 61 (448)
+.+.+|+|.||-|++-|+.|..|...+ + +++.||+..
T Consensus 2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~-~~lFLerkp 39 (436)
T COG3486 2 MAEVLDLIGIGIGPFNLSLAALLEEHSGL-KSLFLERKP 39 (436)
T ss_pred CCcceeeEEEccCchHHHHHHHhccccCc-ceEEEecCC
Confidence 456899999999999999999999986 6 799999975
No 364
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=94.69 E-value=0.044 Score=55.23 Aligned_cols=35 Identities=29% Similarity=0.374 Sum_probs=31.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
...+|+|||||.+|+-+|..|++.|. +|+|+|+.+
T Consensus 351 ~~k~VvViGgG~~g~E~A~~L~~~g~-~Vtli~~~~ 385 (515)
T TIGR03140 351 KGKDVAVIGGGNSGIEAAIDLAGIVR-HVTVLEFAD 385 (515)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhcCc-EEEEEEeCC
Confidence 35699999999999999999999999 899999754
No 365
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.65 E-value=0.045 Score=50.43 Aligned_cols=33 Identities=33% Similarity=0.487 Sum_probs=30.5
Q ss_pred CcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 28 NSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 28 ~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
.+|+|||+|..|...|..|+++|+ +|+++|.++
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~ 38 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV-DVLVFETTE 38 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC-EEEEEECCH
Confidence 479999999999999999999999 899999863
No 366
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=94.62 E-value=0.057 Score=46.76 Aligned_cols=36 Identities=28% Similarity=0.350 Sum_probs=32.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
-+..+|+|||+|-.|...|..|++.|..+++|+|.+
T Consensus 19 L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 19 LEQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 356889999999999999999999999669999975
No 367
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.59 E-value=0.048 Score=50.46 Aligned_cols=32 Identities=22% Similarity=0.472 Sum_probs=29.8
Q ss_pred CcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 28 NSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 28 ~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
.+|+|||+|..|...|..|+++|+ +|++++.+
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~ 33 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIK 33 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCC-cEEEEeCC
Confidence 369999999999999999999999 89999975
No 368
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=94.57 E-value=0.054 Score=43.70 Aligned_cols=34 Identities=29% Similarity=0.513 Sum_probs=30.8
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
+.+|+|||+|-.|...|..|++.|..+++|+|.+
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d 35 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD 35 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence 5689999999999999999999999789999975
No 369
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=94.54 E-value=0.051 Score=55.97 Aligned_cols=37 Identities=24% Similarity=0.323 Sum_probs=33.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVG 64 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~G 64 (448)
..+|+|||||..|+-.|..|++.|. +|+|+|+.+++.
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~-eVTLIe~~~~ll 348 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGS-EVVSFEYSPQLL 348 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCC-eEEEEeccCccc
Confidence 4589999999999999999999999 899999988764
No 370
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=94.52 E-value=0.048 Score=51.86 Aligned_cols=32 Identities=25% Similarity=0.446 Sum_probs=29.9
Q ss_pred CcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 28 NSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 28 ~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
.+|+|||+|..|.+.|..|+++|+ +|++++++
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~-~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGA-DVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCC-cEEEEecH
Confidence 579999999999999999999999 89999874
No 371
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.48 E-value=0.79 Score=46.85 Aligned_cols=54 Identities=11% Similarity=0.182 Sum_probs=40.2
Q ss_pred HHHHHHHHHhhhcccccccCCCceecCceeEEEEec-CCcEE-EE---eCCCc--EEEeCEEEEeec
Q 013178 226 ESVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYS-KDKVT-VK---TEDGS--VYQANYAIVSVS 285 (448)
Q Consensus 226 ~~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~-~~~v~-V~---~~~g~--~~~ad~VI~a~p 285 (448)
..+...|.+.+.+ .|++|+.++.++++..+ +++|. |. ..+|+ .+.|+.||+|+.
T Consensus 126 ~~i~~~L~~~~~~------~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATG 186 (570)
T PRK05675 126 HALLHTLYQGNLK------NGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATG 186 (570)
T ss_pred HHHHHHHHHHHhc------cCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCC
Confidence 4577778777655 58999999999999875 45543 32 34563 578999999996
No 372
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.47 E-value=0.054 Score=50.68 Aligned_cols=50 Identities=18% Similarity=0.367 Sum_probs=45.6
Q ss_pred CCCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEEceeC
Q 013178 23 TSPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNIG 73 (448)
Q Consensus 23 ~~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~~~~ 73 (448)
..+..+||||||-|+.=...|...++.|. +|+=+|.+..-||...|+...
T Consensus 4 ~lP~~fDvVViGTGlpESilAAAcSrsG~-sVLHlDsn~yYGg~waSfSms 53 (547)
T KOG4405|consen 4 ILPEEFDVVVIGTGLPESILAAACSRSGS-SVLHLDSNEYYGGNWASFSMS 53 (547)
T ss_pred CCchhccEEEEcCCCcHHHHHHHhhhcCC-ceEeccCccccCCcccceeec
Confidence 35789999999999999999999999999 899999999999999887654
No 373
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=94.46 E-value=0.065 Score=46.61 Aligned_cols=34 Identities=24% Similarity=0.430 Sum_probs=30.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
+..+|+|||||-+|+..+..|.+.|. +|+|+..+
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga-~VtVvsp~ 41 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGA-QLRVIAEE 41 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence 34699999999999999999999999 89999764
No 374
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=94.44 E-value=0.059 Score=50.23 Aligned_cols=33 Identities=30% Similarity=0.306 Sum_probs=30.5
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
.++|+|||+|..|...|..|+++|. +|+++.++
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGL-PVRLILRD 34 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCC-CeEEEEec
Confidence 4579999999999999999999999 89999885
No 375
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=94.42 E-value=0.064 Score=49.78 Aligned_cols=33 Identities=33% Similarity=0.420 Sum_probs=30.4
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
..+|.|||+|..|...|..|+++|+ +|+++|.+
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~G~-~V~~~d~~ 36 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAAGM-DVWLLDSD 36 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCC
Confidence 3579999999999999999999999 89999975
No 376
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=94.39 E-value=0.061 Score=53.20 Aligned_cols=36 Identities=17% Similarity=0.291 Sum_probs=32.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRV 63 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~ 63 (448)
..+|+|||||.+|+-+|..|++.|. +|+|+|+.+++
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~G~-~Vtli~~~~~~ 201 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGLGV-QVTLIYRGELI 201 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCC-eEEEEEeCCCC
Confidence 4689999999999999999999999 79999987654
No 377
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=94.34 E-value=0.056 Score=57.56 Aligned_cols=37 Identities=27% Similarity=0.402 Sum_probs=33.4
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVG 64 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~G 64 (448)
..+++|||||..|+-+|..|++.|. +|+|+|..+++-
T Consensus 145 ~k~vvVIGgG~iGlE~A~~L~~~G~-~VtvVe~~~~ll 181 (847)
T PRK14989 145 SKRGAVVGGGLLGLEAAGALKNLGV-ETHVIEFAPMLM 181 (847)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-eEEEEeccccch
Confidence 3579999999999999999999999 799999987653
No 378
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=94.27 E-value=0.079 Score=44.34 Aligned_cols=36 Identities=17% Similarity=0.176 Sum_probs=31.5
Q ss_pred CCCCCcEEEECCCh-HHHHHHHHHHHcCCCcEEEEecC
Q 013178 24 SPPSNSVIIVGAGM-SGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 24 ~~~~~dViIIGaGi-aGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
.-..++|+|||+|- .|..+|..|.+.|. +|+|..++
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r~ 77 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHSK 77 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEECC
Confidence 34678999999995 69999999999999 79999874
No 379
>PLN02507 glutathione reductase
Probab=94.21 E-value=0.069 Score=53.56 Aligned_cols=36 Identities=11% Similarity=0.136 Sum_probs=32.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRV 63 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~ 63 (448)
..+|+|||||..|+-.|..|++.|. +|+|+|+.+++
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~-~Vtli~~~~~~ 238 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGA-TVDLFFRKELP 238 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCC-eEEEEEecCCc
Confidence 4689999999999999999999999 89999987654
No 380
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=94.20 E-value=0.067 Score=53.97 Aligned_cols=35 Identities=29% Similarity=0.355 Sum_probs=31.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
...+|+|||||.+|+-+|..|++.+. +|+|+++.+
T Consensus 350 ~gk~VvVVGgG~~g~e~A~~L~~~~~-~Vtlv~~~~ 384 (517)
T PRK15317 350 KGKRVAVIGGGNSGVEAAIDLAGIVK-HVTVLEFAP 384 (517)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCC-EEEEEEECc
Confidence 45699999999999999999999999 899998764
No 381
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=94.12 E-value=0.064 Score=50.35 Aligned_cols=32 Identities=19% Similarity=0.515 Sum_probs=29.7
Q ss_pred CcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 28 NSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 28 ~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
++|.|||.|..||+.|..|++.|+ +|+.+|..
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GH-eVv~vDid 32 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGH-EVVCVDID 32 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCC-eEEEEeCC
Confidence 479999999999999999999999 89999974
No 382
>PRK10262 thioredoxin reductase; Provisional
Probab=94.09 E-value=0.081 Score=49.81 Aligned_cols=35 Identities=14% Similarity=0.276 Sum_probs=31.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
...+|+|||+|.+|+-.|..|++.|. +|+++++.+
T Consensus 145 ~g~~vvVvGgG~~g~e~A~~l~~~~~-~Vtlv~~~~ 179 (321)
T PRK10262 145 RNQKVAVIGGGNTAVEEALYLSNIAS-EVHLIHRRD 179 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhhCC-EEEEEEECC
Confidence 35689999999999999999999999 799999864
No 383
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=94.08 E-value=0.081 Score=52.32 Aligned_cols=35 Identities=23% Similarity=0.352 Sum_probs=31.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
...+|+|||||..|+-+|..|.+.|. +|+|+++++
T Consensus 271 ~gk~VvVIGgG~~a~d~A~~l~~~G~-~Vtlv~~~~ 305 (449)
T TIGR01316 271 AGKSVVVIGGGNTAVDSARTALRLGA-EVHCLYRRT 305 (449)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC-EEEEEeecC
Confidence 45689999999999999999999999 799999864
No 384
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=94.01 E-value=0.071 Score=49.70 Aligned_cols=31 Identities=29% Similarity=0.478 Sum_probs=29.1
Q ss_pred cEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 29 SVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 29 dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
+|+|||+|..|...|..|+++|+ +|+++.++
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGH-DVTLVARR 32 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence 69999999999999999999999 89999874
No 385
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=94.00 E-value=0.073 Score=54.17 Aligned_cols=37 Identities=14% Similarity=0.227 Sum_probs=33.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRV 63 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~ 63 (448)
...+|+|||||.+|+-.|..|++.|. +|+++++.+++
T Consensus 142 ~g~~VvVIGgG~~g~E~A~~L~~~g~-~Vtli~~~~~~ 178 (555)
T TIGR03143 142 TGMDVFVIGGGFAAAEEAVFLTRYAS-KVTVIVREPDF 178 (555)
T ss_pred CCCEEEEECCCHHHHHHHHHHHccCC-EEEEEEeCCcc
Confidence 35789999999999999999999999 89999987753
No 386
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.96 E-value=0.09 Score=49.23 Aligned_cols=33 Identities=21% Similarity=0.419 Sum_probs=30.3
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
..+|.|||+|..|.+.|..|++.|+ +|++++.+
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~~ 36 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARKGL-QVVLIDVM 36 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence 4579999999999999999999999 79999975
No 387
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=93.93 E-value=0.094 Score=52.48 Aligned_cols=36 Identities=28% Similarity=0.488 Sum_probs=31.9
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
+.-.+|.|||+|..|...|..|+++|+ +|+++|.+.
T Consensus 5 ~~i~~V~VIGaG~MG~gIA~~la~aG~-~V~l~D~~~ 40 (507)
T PRK08268 5 PSIATVAVIGAGAMGAGIAQVAAQAGH-TVLLYDARA 40 (507)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCH
Confidence 345679999999999999999999999 899999744
No 388
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=93.91 E-value=0.08 Score=49.04 Aligned_cols=32 Identities=31% Similarity=0.578 Sum_probs=30.0
Q ss_pred CcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 28 NSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 28 ~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
.+|+|||+|..|...|..|+++|+ +|+++|.+
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~ 35 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVS 35 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCC
Confidence 579999999999999999999999 89999975
No 389
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=93.88 E-value=0.14 Score=48.97 Aligned_cols=34 Identities=32% Similarity=0.462 Sum_probs=31.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
...+|+|||+|.+|+.+|..|...|. +|++++++
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~ 199 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDIN 199 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECC
Confidence 45679999999999999999999999 79999875
No 390
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.88 E-value=0.085 Score=49.22 Aligned_cols=33 Identities=30% Similarity=0.504 Sum_probs=29.3
Q ss_pred cEEEECCChHHHHHHHHHHHcCC-CcEEEEecCC
Q 013178 29 SVIIVGAGMSGFMAAKTLEEAGY-KDFIILEASS 61 (448)
Q Consensus 29 dViIIGaGiaGL~aA~~L~~~G~-~~V~vlE~~~ 61 (448)
+|.|||+|..|.++|+.|+..|. .+|+++|.+.
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~ 35 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK 35 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence 69999999999999999999994 2799999853
No 391
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.87 E-value=0.092 Score=48.39 Aligned_cols=32 Identities=31% Similarity=0.542 Sum_probs=29.8
Q ss_pred CcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 28 NSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 28 ~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
.+|+|||+|..|.+.|..|+++|+ +|+++|.+
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~ 35 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGY-DVVMVDIS 35 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCC-ceEEEeCC
Confidence 479999999999999999999999 89999875
No 392
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.87 E-value=0.096 Score=49.47 Aligned_cols=33 Identities=21% Similarity=0.218 Sum_probs=30.4
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
.++|.|||+|..|.+.|..|+++|+ +|++++++
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~-~V~~~~r~ 36 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGV-PVRLWARR 36 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCC-eEEEEeCC
Confidence 3479999999999999999999999 89999985
No 393
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=93.86 E-value=0.11 Score=47.08 Aligned_cols=37 Identities=22% Similarity=0.369 Sum_probs=33.1
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
-+...|+|||+|-.|..+|..|++.|..+++|+|.+.
T Consensus 28 L~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~ 64 (268)
T PRK15116 28 FADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD 64 (268)
T ss_pred hcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 3567999999999999999999999976899999763
No 394
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=93.86 E-value=0.1 Score=45.30 Aligned_cols=34 Identities=26% Similarity=0.380 Sum_probs=30.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
+..+|+|||||-.|...|..|.+.|. +|+|++..
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga-~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGA-HIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEcCC
Confidence 45799999999999999999999999 79999753
No 395
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=93.84 E-value=0.076 Score=51.77 Aligned_cols=34 Identities=15% Similarity=0.299 Sum_probs=30.9
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
.++|.|||.|..|+..|..|+++|+ +|++++.+.
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~G~-~V~~~D~~~ 36 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASRQK-QVIGVDINQ 36 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhCCC-EEEEEeCCH
Confidence 3579999999999999999999999 899999754
No 396
>PRK04148 hypothetical protein; Provisional
Probab=93.79 E-value=0.07 Score=42.47 Aligned_cols=34 Identities=29% Similarity=0.616 Sum_probs=30.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
+..++++||.| .|...|..|++.|+ +|+.+|-+.
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~-~ViaIDi~~ 49 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGF-DVIVIDINE 49 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCC-EEEEEECCH
Confidence 34689999999 99999999999999 899999754
No 397
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=93.76 E-value=0.12 Score=48.31 Aligned_cols=40 Identities=15% Similarity=0.234 Sum_probs=33.4
Q ss_pred CCCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCC
Q 013178 23 TSPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSR 62 (448)
Q Consensus 23 ~~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~ 62 (448)
.+-+..+|+|||||-.|.+.|+.|+..|..+|+|+|.+..
T Consensus 2 ~~~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~ 41 (321)
T PTZ00082 2 TMIKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN 41 (321)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 3445579999999999999999999999536999997653
No 398
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=93.74 E-value=0.086 Score=49.19 Aligned_cols=30 Identities=37% Similarity=0.433 Sum_probs=28.4
Q ss_pred cEEEECCChHHHHHHHHHHHcCCCcEEEEec
Q 013178 29 SVIIVGAGMSGFMAAKTLEEAGYKDFIILEA 59 (448)
Q Consensus 29 dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~ 59 (448)
+|+|||+|..|.+.|..|+++|+ +|+++.+
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~-~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGR-DVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCC-ceEEEec
Confidence 69999999999999999999999 8999976
No 399
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=93.73 E-value=0.055 Score=41.29 Aligned_cols=34 Identities=26% Similarity=0.408 Sum_probs=30.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
+..+|+|||||-.|..-+..|.+.|. +|+|+-..
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA-~v~vis~~ 39 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGA-KVTVISPE 39 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTB-EEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCc
Confidence 56789999999999999999999999 89999876
No 400
>PRK12831 putative oxidoreductase; Provisional
Probab=93.70 E-value=0.1 Score=51.78 Aligned_cols=36 Identities=28% Similarity=0.301 Sum_probs=32.2
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
....+|+|||||.+|+-+|..|.+.|. +|+|+++++
T Consensus 279 ~~gk~VvVIGgG~va~d~A~~l~r~Ga-~Vtlv~r~~ 314 (464)
T PRK12831 279 KVGKKVAVVGGGNVAMDAARTALRLGA-EVHIVYRRS 314 (464)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHcCC-EEEEEeecC
Confidence 345799999999999999999999999 799998754
No 401
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=93.69 E-value=0.1 Score=47.95 Aligned_cols=35 Identities=26% Similarity=0.410 Sum_probs=31.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
...+|+|||+|-+|-++|+.|++.|.++|+|++++
T Consensus 126 ~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~ 160 (284)
T PRK12549 126 SLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD 160 (284)
T ss_pred cCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC
Confidence 34789999999999999999999998679999875
No 402
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=93.67 E-value=0.11 Score=46.00 Aligned_cols=36 Identities=28% Similarity=0.512 Sum_probs=32.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCC--cEEEEecC
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYK--DFIILEAS 60 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~--~V~vlE~~ 60 (448)
-+..+|+|+|||-+|..+|+.|.+.|.+ +|.|++++
T Consensus 23 l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 23 IEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 4557899999999999999999999985 69999986
No 403
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.56 E-value=0.092 Score=52.19 Aligned_cols=34 Identities=18% Similarity=0.075 Sum_probs=31.0
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
..+|+|+|.|.+|.++|..|.+.|. +|++.|.++
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~~g~-~v~~~d~~~ 41 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRAHLP-AQALTLFCN 41 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHHcCC-EEEEEcCCC
Confidence 4579999999999999999999999 799999754
No 404
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=93.56 E-value=0.092 Score=50.96 Aligned_cols=80 Identities=25% Similarity=0.379 Sum_probs=51.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEE-ceeCCceeeecce----------eccCC-CCCCCH
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHK-GNIGGHTIELGAN----------WVNSG-GPKSSP 93 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s-~~~~g~~~d~G~~----------~~~~~-~~~~~~ 93 (448)
..++|+|+|-|.+|++||..|.+.|. +|++.|.+...=+.... ....+..+..|.+ .+.++ -+..++
T Consensus 6 ~~~kv~V~GLG~sG~a~a~~L~~~G~-~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPGi~~~~p 84 (448)
T COG0771 6 QGKKVLVLGLGKSGLAAARFLLKLGA-EVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPGIPPTHP 84 (448)
T ss_pred cCCEEEEEecccccHHHHHHHHHCCC-eEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEECCCCCCCCH
Confidence 37899999999999999999999999 89999976544111111 0112333333321 11111 134567
Q ss_pred HHHHHHHcCCcee
Q 013178 94 SLQIAKKIKLKTF 106 (448)
Q Consensus 94 ~~~l~~~lgl~~~ 106 (448)
+...++..|++..
T Consensus 85 ~v~~A~~~gi~i~ 97 (448)
T COG0771 85 LVEAAKAAGIEII 97 (448)
T ss_pred HHHHHHHcCCcEE
Confidence 8888888888753
No 405
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=93.52 E-value=0.12 Score=48.03 Aligned_cols=35 Identities=20% Similarity=0.266 Sum_probs=31.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
...+|+|||+|.+|+-+|..|++.+. +|+++++.+
T Consensus 140 ~~~~v~ViG~G~~~~e~a~~l~~~~~-~V~~v~~~~ 174 (300)
T TIGR01292 140 KNKEVAVVGGGDSAIEEALYLTRIAK-KVTLVHRRD 174 (300)
T ss_pred CCCEEEEECCChHHHHHHHHHHhhcC-EEEEEEeCc
Confidence 34689999999999999999999998 899999853
No 406
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=93.51 E-value=0.11 Score=49.66 Aligned_cols=35 Identities=23% Similarity=0.310 Sum_probs=30.3
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
..+|+|||+|..|+-+|..|.+.|.++|+|+++++
T Consensus 172 g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 172 GKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 46899999999999999999999982399998753
No 407
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=93.49 E-value=0.17 Score=36.39 Aligned_cols=40 Identities=25% Similarity=0.334 Sum_probs=31.0
Q ss_pred HHHHHHHHhhhcccccccCCCceecCceeEEEEecCCcEEEEeCCC
Q 013178 227 SVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVTVKTEDG 272 (448)
Q Consensus 227 ~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~g 272 (448)
.+...+.+.+++ .|+++++|+.|++|+.++++++|+++||
T Consensus 41 ~~~~~~~~~l~~------~gV~v~~~~~v~~i~~~~~~~~V~~~~g 80 (80)
T PF00070_consen 41 DAAKILEEYLRK------RGVEVHTNTKVKEIEKDGDGVEVTLEDG 80 (80)
T ss_dssp HHHHHHHHHHHH------TTEEEEESEEEEEEEEETTSEEEEEETS
T ss_pred HHHHHHHHHHHH------CCCEEEeCCEEEEEEEeCCEEEEEEecC
Confidence 344445555554 5999999999999999988877888776
No 408
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.48 E-value=0.13 Score=48.13 Aligned_cols=35 Identities=23% Similarity=0.275 Sum_probs=31.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
+.++|.|||+|..|.+.|..|+++|+ +|+++.++.
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~-~V~~~~r~~ 37 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGH-RVRVWSRRS 37 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCC-EEEEEeCCC
Confidence 34579999999999999999999999 899999864
No 409
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=93.40 E-value=0.14 Score=42.51 Aligned_cols=32 Identities=22% Similarity=0.434 Sum_probs=29.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEe
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILE 58 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE 58 (448)
+..+|+|||||-.|+.-|..|.+.|. +|+|+.
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga-~V~VIs 43 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGA-FVTVVS 43 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEc
Confidence 46789999999999999999999999 899994
No 410
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=93.33 E-value=0.13 Score=43.07 Aligned_cols=33 Identities=27% Similarity=0.478 Sum_probs=28.2
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
+.+|.|||-|..|...|.+|.++|+ +|.+++++
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~-~v~~~d~~ 33 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGY-EVTVYDRS 33 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTT-EEEEEESS
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCC-eEEeeccc
Confidence 3589999999999999999999999 89999975
No 411
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.21 E-value=0.11 Score=51.30 Aligned_cols=34 Identities=21% Similarity=0.437 Sum_probs=29.8
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
....+|+|+|.|.+|.++|..|.+ |. +|+|.|.+
T Consensus 4 ~~~~~v~v~G~G~sG~a~~~~L~~-g~-~v~v~D~~ 37 (454)
T PRK01368 4 HTKQKIGVFGLGKTGISVYEELQN-KY-DVIVYDDL 37 (454)
T ss_pred CCCCEEEEEeecHHHHHHHHHHhC-CC-EEEEECCC
Confidence 345689999999999999999995 99 89999954
No 412
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=93.19 E-value=0.16 Score=44.43 Aligned_cols=35 Identities=26% Similarity=0.305 Sum_probs=32.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
+..+|+|||+|-.|...|..|++.|..+++|+|.+
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 56789999999999999999999999679999975
No 413
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=93.18 E-value=0.15 Score=47.51 Aligned_cols=34 Identities=26% Similarity=0.515 Sum_probs=29.6
Q ss_pred CcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 28 NSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 28 ~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
.+|+|||+|..|+..|+.|+..|+.+|+++|...
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~ 35 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVE 35 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 5799999999999999999998852599999743
No 414
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.14 E-value=0.085 Score=48.42 Aligned_cols=36 Identities=28% Similarity=0.302 Sum_probs=30.3
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
-+.+||+|||||-+|.-||..|+--=. .|+|||-.+
T Consensus 352 F~gK~VAVIGGGNSGvEAAIDLAGiv~-hVtllEF~~ 387 (520)
T COG3634 352 FKGKRVAVIGGGNSGVEAAIDLAGIVE-HVTLLEFAP 387 (520)
T ss_pred cCCceEEEECCCcchHHHHHhHHhhhh-eeeeeecch
Confidence 357899999999999999999987544 699999653
No 415
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.13 E-value=0.16 Score=47.30 Aligned_cols=36 Identities=25% Similarity=0.574 Sum_probs=31.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCC-cEEEEecCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYK-DFIILEASS 61 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~-~V~vlE~~~ 61 (448)
++.+|+|||+|-.|.++|+.|...|.. +++|+|.+.
T Consensus 2 ~~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~ 38 (312)
T cd05293 2 PRNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE 38 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 467999999999999999999998875 799999753
No 416
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=93.10 E-value=0.17 Score=42.83 Aligned_cols=32 Identities=28% Similarity=0.322 Sum_probs=29.6
Q ss_pred cEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 29 SVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 29 dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
+|+|||+|-.|...|..|++.|..+++|+|.+
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 58999999999999999999999679999985
No 417
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=93.02 E-value=0.12 Score=50.47 Aligned_cols=32 Identities=19% Similarity=0.388 Sum_probs=30.0
Q ss_pred cEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 29 SVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 29 dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
+|.|||.|..|+..|..|+++|+ +|++++.+.
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~-~V~~~d~~~ 33 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGH-EVTGVDIDQ 33 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCC-eEEEEECCH
Confidence 69999999999999999999999 899999864
No 418
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=92.97 E-value=0.15 Score=48.12 Aligned_cols=32 Identities=25% Similarity=0.350 Sum_probs=29.8
Q ss_pred CcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 28 NSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 28 ~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
++|.|||+|..|...|..|++.|+ +|++++++
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~-~V~~~~r~ 33 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGH-DVTLWARD 33 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-EEEEEECC
Confidence 479999999999999999999999 89999875
No 419
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=92.87 E-value=0.19 Score=43.67 Aligned_cols=36 Identities=33% Similarity=0.421 Sum_probs=32.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
-.+.+|+|||.|-.|..+|..|++.|..+++|+|.+
T Consensus 19 l~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 19 LLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 357899999999999999999999998789999875
No 420
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=92.82 E-value=0.19 Score=44.97 Aligned_cols=35 Identities=31% Similarity=0.491 Sum_probs=32.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
+..+|+|||+|-.|..+|..|++.|..+++|+|.+
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 57 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFD 57 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 46899999999999999999999998889999875
No 421
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=92.81 E-value=0.22 Score=40.41 Aligned_cols=33 Identities=27% Similarity=0.485 Sum_probs=29.7
Q ss_pred CcEEEECC-ChHHHHHHHHHHHcCCC-cEEEEecC
Q 013178 28 NSVIIVGA-GMSGFMAAKTLEEAGYK-DFIILEAS 60 (448)
Q Consensus 28 ~dViIIGa-GiaGL~aA~~L~~~G~~-~V~vlE~~ 60 (448)
.+|+|||+ |-.|.+.|+.|...+.- ++++++.+
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~ 35 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDIN 35 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccC
Confidence 47999999 99999999999998764 79999986
No 422
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=92.79 E-value=0.13 Score=51.10 Aligned_cols=39 Identities=23% Similarity=0.286 Sum_probs=33.7
Q ss_pred CCCCCCCcEEEECCChHHHH-HHHHHHHcCCCcEEEEecCC
Q 013178 22 PTSPPSNSVIIVGAGMSGFM-AAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 22 ~~~~~~~dViIIGaGiaGL~-aA~~L~~~G~~~V~vlE~~~ 61 (448)
|...+..+|.|||.|-+|++ +|..|.+.|. +|++.|.+.
T Consensus 2 ~~~~~~~~v~viG~G~sG~s~~a~~L~~~G~-~V~~~D~~~ 41 (461)
T PRK00421 2 PELRRIKRIHFVGIGGIGMSGLAEVLLNLGY-KVSGSDLKE 41 (461)
T ss_pred CCcCCCCEEEEEEEchhhHHHHHHHHHhCCC-eEEEECCCC
Confidence 44556678999999999999 6999999999 799999754
No 423
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=92.72 E-value=0.2 Score=47.63 Aligned_cols=45 Identities=24% Similarity=0.474 Sum_probs=37.4
Q ss_pred CCcEEEECCChHHHHHHHHHHHcC-CCcEEEEecC--------CCCCceEEEcee
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAG-YKDFIILEAS--------SRVGGRLHKGNI 72 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G-~~~V~vlE~~--------~~~GGr~~s~~~ 72 (448)
+.+|+|||+|-.|.++|+.|++.| . +|+|-+++ ...++++.+...
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~-~V~iAdRs~~~~~~i~~~~~~~v~~~~v 54 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDG-EVTIADRSKEKCARIAELIGGKVEALQV 54 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHhhccccceeEEe
Confidence 468999999999999999999998 6 89999986 455666666544
No 424
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=92.72 E-value=0.2 Score=49.81 Aligned_cols=35 Identities=23% Similarity=0.433 Sum_probs=31.9
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
....+|+|||+|.+||.|+..+...|. +|+++|.+
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~ 197 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTR 197 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 457899999999999999999999999 79999864
No 425
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=92.65 E-value=0.19 Score=47.49 Aligned_cols=35 Identities=34% Similarity=0.485 Sum_probs=32.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
+..+|+|||+|-.|..+|..|+++|..+++|+|.+
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D 57 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRD 57 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 46789999999999999999999998679999985
No 426
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=92.61 E-value=0.18 Score=50.52 Aligned_cols=32 Identities=22% Similarity=0.266 Sum_probs=29.8
Q ss_pred CcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 28 NSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 28 ~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
.+|.|||+|..|...|..|+++|+ +|+|++.+
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~-~V~v~D~~ 36 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGI-DVAVFDPH 36 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCC
Confidence 369999999999999999999999 89999975
No 427
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=92.60 E-value=0.22 Score=40.61 Aligned_cols=32 Identities=25% Similarity=0.394 Sum_probs=29.6
Q ss_pred cEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 29 SVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 29 dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
+|+|||+|-.|...|..|++.|.++++|++.+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 58999999999999999999998779999975
No 428
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=92.59 E-value=0.15 Score=43.88 Aligned_cols=36 Identities=28% Similarity=0.394 Sum_probs=32.9
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 24 SPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 24 ~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
+.....|.|||||..|.-.|-..+..|+ +|.|++++
T Consensus 8 ~~~~~~V~ivGaG~MGSGIAQv~a~sg~-~V~l~d~~ 43 (298)
T KOG2304|consen 8 MAEIKNVAIVGAGQMGSGIAQVAATSGL-NVWLVDAN 43 (298)
T ss_pred cccccceEEEcccccchhHHHHHHhcCC-ceEEecCC
Confidence 4566799999999999999999999999 89999986
No 429
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=92.54 E-value=0.17 Score=47.69 Aligned_cols=31 Identities=23% Similarity=0.260 Sum_probs=29.1
Q ss_pred cEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 29 SVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 29 dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
+|.|||+|.-|.+.|..|+++|+ +|+++.++
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~-~V~l~~r~ 32 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKI-SVNLWGRN 32 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCC-eEEEEecC
Confidence 59999999999999999999999 89999874
No 430
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=92.51 E-value=0.21 Score=47.15 Aligned_cols=35 Identities=31% Similarity=0.478 Sum_probs=32.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
+..+|+|||+|-.|..+|..|+++|..+++|+|.+
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 56789999999999999999999998789999984
No 431
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=92.50 E-value=0.21 Score=44.84 Aligned_cols=35 Identities=26% Similarity=0.430 Sum_probs=32.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
+..+|+|||+|-.|..+|..|+..|..+++|+|.+
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D 65 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD 65 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 56899999999999999999999998789999875
No 432
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=92.47 E-value=0.2 Score=49.76 Aligned_cols=35 Identities=23% Similarity=0.393 Sum_probs=31.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
...+|+|||||.+|+-+|..|.+.|.++|+|++++
T Consensus 272 ~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~ 306 (457)
T PRK11749 272 VGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRR 306 (457)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeec
Confidence 45799999999999999999999987569999875
No 433
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=92.45 E-value=0.17 Score=50.55 Aligned_cols=33 Identities=24% Similarity=0.391 Sum_probs=30.5
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
-.+|.|||+|..|...|..|+++|+ +|+|+|++
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~-~V~l~d~~ 37 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGH-QVLLYDIR 37 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCC
Confidence 4569999999999999999999999 89999975
No 434
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=92.35 E-value=0.26 Score=38.40 Aligned_cols=31 Identities=32% Similarity=0.617 Sum_probs=27.6
Q ss_pred EEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 30 VIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 30 ViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
|+|+|.|-.|...|..|.+.+. +|+++|.+.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~-~vvvid~d~ 31 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGI-DVVVIDRDP 31 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTS-EEEEEESSH
T ss_pred eEEEcCCHHHHHHHHHHHhCCC-EEEEEECCc
Confidence 7999999999999999999887 799999863
No 435
>PLN02602 lactate dehydrogenase
Probab=92.33 E-value=0.3 Score=46.24 Aligned_cols=36 Identities=19% Similarity=0.398 Sum_probs=31.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCC-cEEEEecCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYK-DFIILEASS 61 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~-~V~vlE~~~ 61 (448)
.+.+|+|||+|-.|.++|+.|...|.. +++|+|.+.
T Consensus 36 ~~~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~ 72 (350)
T PLN02602 36 RHTKVSVVGVGNVGMAIAQTILTQDLADELALVDVNP 72 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence 337999999999999999999998874 799999753
No 436
>PRK08328 hypothetical protein; Provisional
Probab=92.25 E-value=0.24 Score=44.03 Aligned_cols=35 Identities=26% Similarity=0.371 Sum_probs=31.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
+..+|+|||+|-.|..+|..|++.|..+++|+|.+
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D 60 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ 60 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 46789999999999999999999998789999864
No 437
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=92.22 E-value=0.29 Score=45.80 Aligned_cols=36 Identities=28% Similarity=0.497 Sum_probs=31.7
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCC-cEEEEecC
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYK-DFIILEAS 60 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~-~V~vlE~~ 60 (448)
+...+|+|||+|-.|-++|+.|+..|.. +++|+|.+
T Consensus 4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~ 40 (315)
T PRK00066 4 KQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDIN 40 (315)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 4567999999999999999999999874 69999974
No 438
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.20 E-value=0.2 Score=50.16 Aligned_cols=33 Identities=21% Similarity=0.371 Sum_probs=30.2
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
..+|+|+|.|.+|++++..|.+.|. +|++.|.+
T Consensus 12 ~~~v~V~G~G~sG~aa~~~L~~~G~-~v~~~D~~ 44 (488)
T PRK03369 12 GAPVLVAGAGVTGRAVLAALTRFGA-RPTVCDDD 44 (488)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence 4679999999999999999999999 79999964
No 439
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=92.13 E-value=0.32 Score=35.57 Aligned_cols=34 Identities=26% Similarity=0.446 Sum_probs=29.9
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHc-CCCcEEEEec
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEA-GYKDFIILEA 59 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~-G~~~V~vlE~ 59 (448)
-...+++|+|+|..|..+|..|.+. +. +|.++++
T Consensus 21 ~~~~~v~i~G~G~~g~~~a~~l~~~~~~-~v~v~~r 55 (86)
T cd05191 21 LKGKTVVVLGAGEVGKGIAKLLADEGGK-KVVLCDR 55 (86)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCC-EEEEEcC
Confidence 3456899999999999999999998 56 7999987
No 440
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=92.05 E-value=0.26 Score=43.79 Aligned_cols=35 Identities=31% Similarity=0.423 Sum_probs=32.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
+..+|+|||+|-.|...|..|++.|..+++|+|.+
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D 54 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDD 54 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 46799999999999999999999999889999875
No 441
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=92.04 E-value=0.2 Score=46.07 Aligned_cols=31 Identities=23% Similarity=0.219 Sum_probs=28.9
Q ss_pred cEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 29 SVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 29 dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
+|.|||.|..|.+.|..|+++|+ +|++++++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~ 32 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRR 32 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC-EEEEEECC
Confidence 69999999999999999999999 79999874
No 442
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.04 E-value=0.2 Score=49.67 Aligned_cols=33 Identities=27% Similarity=0.370 Sum_probs=30.6
Q ss_pred CcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 28 NSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 28 ~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
.+|.|+|.|.+|+++|..|.+.|+ +|++.|.++
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~~ 47 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLGA-KVTAFDKKS 47 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCCC-EEEEECCCC
Confidence 579999999999999999999999 799999764
No 443
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=92.02 E-value=0.26 Score=45.37 Aligned_cols=35 Identities=20% Similarity=0.335 Sum_probs=31.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
+..+|+|||+|=+|-++++.|.+.|.++|+|+.++
T Consensus 124 ~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt 158 (282)
T TIGR01809 124 AGFRGLVIGAGGTSRAAVYALASLGVTDITVINRN 158 (282)
T ss_pred CCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 45689999999999999999999998679999764
No 444
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.85 E-value=0.22 Score=49.34 Aligned_cols=34 Identities=26% Similarity=0.507 Sum_probs=30.6
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
...|+|+|+|-+|+++|..|++.|. +|++.|.+.
T Consensus 5 ~k~v~v~G~g~~G~s~a~~l~~~G~-~V~~~d~~~ 38 (447)
T PRK02472 5 NKKVLVLGLAKSGYAAAKLLHKLGA-NVTVNDGKP 38 (447)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEcCCC
Confidence 4579999999999999999999999 899998653
No 445
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=91.85 E-value=0.22 Score=46.32 Aligned_cols=32 Identities=34% Similarity=0.529 Sum_probs=28.4
Q ss_pred CcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 28 NSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 28 ~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
++|.|+|+|..|...|+.|+++|. +|+++=++
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~-~V~~~~R~ 32 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGH-DVTLLVRS 32 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCC-eEEEEecH
Confidence 479999999999999999999997 78888654
No 446
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=91.85 E-value=0.27 Score=45.53 Aligned_cols=34 Identities=24% Similarity=0.444 Sum_probs=31.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
...+|+|||.|.+|..+|..|++.|. +|++++++
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~ 184 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARK 184 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence 46799999999999999999999999 89999886
No 447
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.83 E-value=0.26 Score=48.77 Aligned_cols=35 Identities=17% Similarity=0.383 Sum_probs=31.6
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSR 62 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~ 62 (448)
...|+|+|.|-+|+++|..|++.|. +|++.|....
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g~-~v~~~d~~~~ 39 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNGA-EVAAYDAELK 39 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCCC
Confidence 4579999999999999999999999 7999997654
No 448
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=91.77 E-value=0.55 Score=46.60 Aligned_cols=34 Identities=24% Similarity=0.479 Sum_probs=31.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
...+|+|+|+|..|+.++..+...|. +|+++|.+
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~ 196 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTR 196 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 46899999999999999999999999 79999875
No 449
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=91.66 E-value=0.25 Score=48.86 Aligned_cols=32 Identities=16% Similarity=0.279 Sum_probs=28.5
Q ss_pred CcEEEECCChHHHHHHHHHHHcC--CCcEEEEecC
Q 013178 28 NSVIIVGAGMSGFMAAKTLEEAG--YKDFIILEAS 60 (448)
Q Consensus 28 ~dViIIGaGiaGL~aA~~L~~~G--~~~V~vlE~~ 60 (448)
++|+|||+|..||..|..|+++| + +|+.+|.+
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~-~V~gvD~~ 35 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDI-EVVVVDIS 35 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCC-eEEEEECC
Confidence 57999999999999999999985 6 79999863
No 450
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=91.64 E-value=0.3 Score=44.85 Aligned_cols=34 Identities=29% Similarity=0.373 Sum_probs=30.6
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
...|+|||||=++-++++.|++.|.++|+|+.++
T Consensus 127 ~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~ 160 (283)
T PRK14027 127 LDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLD 160 (283)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 5689999999999999999999998679999764
No 451
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=91.64 E-value=0.31 Score=42.23 Aligned_cols=34 Identities=26% Similarity=0.479 Sum_probs=30.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
+.+.|+|+|.|-.|..+|..|.+.|. +|++.+.+
T Consensus 27 ~gk~v~I~G~G~vG~~~A~~L~~~G~-~Vvv~D~~ 60 (200)
T cd01075 27 EGKTVAVQGLGKVGYKLAEHLLEEGA-KLIVADIN 60 (200)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence 45689999999999999999999999 79998864
No 452
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=91.59 E-value=0.11 Score=48.50 Aligned_cols=40 Identities=20% Similarity=0.443 Sum_probs=36.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCce
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGR 66 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr 66 (448)
-+.+.+|||||+.||-.+-.-.+.|. +|+++|..+.+||.
T Consensus 210 vPk~~~viG~G~IGLE~gsV~~rLGs-eVT~VEf~~~i~~~ 249 (506)
T KOG1335|consen 210 VPKKLTVIGAGYIGLEMGSVWSRLGS-EVTVVEFLDQIGGV 249 (506)
T ss_pred CcceEEEEcCceeeeehhhHHHhcCC-eEEEEEehhhhccc
Confidence 36789999999999999999999999 89999999988873
No 453
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=91.56 E-value=0.3 Score=46.34 Aligned_cols=38 Identities=26% Similarity=0.482 Sum_probs=33.7
Q ss_pred CCCCCCcEEEECCChHHHHHHHHHHHcCCC--cEEEEecC
Q 013178 23 TSPPSNSVIIVGAGMSGFMAAKTLEEAGYK--DFIILEAS 60 (448)
Q Consensus 23 ~~~~~~dViIIGaGiaGL~aA~~L~~~G~~--~V~vlE~~ 60 (448)
..-+..+|+|.|||.||+++|..|...|.+ +|.++|+.
T Consensus 195 k~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~ 234 (432)
T COG0281 195 KKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRK 234 (432)
T ss_pred CCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecC
Confidence 344678999999999999999999999986 79999986
No 454
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=91.45 E-value=0.3 Score=51.84 Aligned_cols=36 Identities=25% Similarity=0.334 Sum_probs=31.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
...+|+|||||.+|+-+|..|.+.|.++|+|+++++
T Consensus 569 ~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 569 FGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 457899999999999999999999983399999764
No 455
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=91.43 E-value=0.27 Score=45.32 Aligned_cols=33 Identities=33% Similarity=0.550 Sum_probs=30.5
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
-..|.|||||..|-.-|+.++..|+ +|+++|.+
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~-~V~l~D~~ 35 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGY-DVVLKDIS 35 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCC-ceEEEeCC
Confidence 4689999999999999999999889 89999986
No 456
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=91.42 E-value=0.26 Score=47.47 Aligned_cols=30 Identities=17% Similarity=0.377 Sum_probs=27.1
Q ss_pred cEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 29 SVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 29 dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
+|.|||.|..|+..|..|++ |+ +|+++|.+
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~-~VigvD~d 31 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NH-EVVALDIL 31 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CC-cEEEEECC
Confidence 69999999999999988875 99 89999974
No 457
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=91.42 E-value=0.3 Score=47.18 Aligned_cols=34 Identities=24% Similarity=0.366 Sum_probs=31.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
....|+|+|+|..|+.+|..|+..|. +|+++|.+
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d 234 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVD 234 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence 45689999999999999999999999 79999875
No 458
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=91.27 E-value=0.29 Score=51.23 Aligned_cols=36 Identities=17% Similarity=0.244 Sum_probs=32.1
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
..-.+|+|||||..|...|+.++.+|+ +|+++|.+.
T Consensus 311 ~~i~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~ 346 (714)
T TIGR02437 311 KDVKQAAVLGAGIMGGGIAYQSASKGT-PIVMKDINQ 346 (714)
T ss_pred cccceEEEECCchHHHHHHHHHHhCCC-eEEEEeCCH
Confidence 345679999999999999999999999 899999863
No 459
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=91.24 E-value=0.29 Score=51.31 Aligned_cols=34 Identities=21% Similarity=0.279 Sum_probs=31.2
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
-.+|+|||||..|...|..++.+|+ +|+++|.+.
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~ 346 (715)
T PRK11730 313 VKQAAVLGAGIMGGGIAYQSASKGV-PVIMKDINQ 346 (715)
T ss_pred cceEEEECCchhHHHHHHHHHhCCC-eEEEEeCCH
Confidence 4579999999999999999999999 899999863
No 460
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=91.18 E-value=0.35 Score=50.31 Aligned_cols=37 Identities=27% Similarity=0.441 Sum_probs=32.1
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
....+|+|||||.+|+-+|..|.+.|.++|+|+++++
T Consensus 321 ~~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~ 357 (652)
T PRK12814 321 HPGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRT 357 (652)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 3467999999999999999999999864699998764
No 461
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=91.05 E-value=0.39 Score=41.56 Aligned_cols=35 Identities=37% Similarity=0.489 Sum_probs=32.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
+..+|+|||+|-.|..+|..|+..|.++++|+|.+
T Consensus 18 ~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d 52 (198)
T cd01485 18 RSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHR 52 (198)
T ss_pred hhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 46799999999999999999999999789999975
No 462
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=91.03 E-value=0.38 Score=41.58 Aligned_cols=35 Identities=26% Similarity=0.346 Sum_probs=32.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
+..+|+|||+|--|...|..|+..|.++++|+|.+
T Consensus 20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d 54 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDR 54 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 46789999999999999999999999789999875
No 463
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=91.00 E-value=0.34 Score=45.19 Aligned_cols=33 Identities=27% Similarity=0.542 Sum_probs=29.5
Q ss_pred cEEEECCChHHHHHHHHHHHcCCC-cEEEEecCC
Q 013178 29 SVIIVGAGMSGFMAAKTLEEAGYK-DFIILEASS 61 (448)
Q Consensus 29 dViIIGaGiaGL~aA~~L~~~G~~-~V~vlE~~~ 61 (448)
+|+|||+|-.|.+.|+.|+..|.. ++++++++.
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~ 35 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINE 35 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 699999999999999999999953 799999853
No 464
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=90.94 E-value=0.36 Score=45.08 Aligned_cols=35 Identities=20% Similarity=0.379 Sum_probs=29.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCC-cEEEEecC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYK-DFIILEAS 60 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~-~V~vlE~~ 60 (448)
...+|+|||+|..|.+.|..|.+.|.. +|.+++++
T Consensus 5 ~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~ 40 (307)
T PRK07502 5 LFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRS 40 (307)
T ss_pred CCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 345799999999999999999999842 68888874
No 465
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=90.91 E-value=0.4 Score=44.28 Aligned_cols=35 Identities=17% Similarity=0.273 Sum_probs=30.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
+...++|+|||=+|.++|+.|++.|.++|+|+.++
T Consensus 125 ~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~ 159 (289)
T PRK12548 125 KGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIK 159 (289)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 45689999999999999999999998459999875
No 466
>PRK08223 hypothetical protein; Validated
Probab=90.91 E-value=0.41 Score=43.68 Aligned_cols=35 Identities=29% Similarity=0.342 Sum_probs=32.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
+..+|+|||+|-.|..+|..|+.+|..+++|+|.+
T Consensus 26 ~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D 60 (287)
T PRK08223 26 RNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFD 60 (287)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 56899999999999999999999999889999875
No 467
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=90.86 E-value=0.35 Score=46.47 Aligned_cols=35 Identities=43% Similarity=0.620 Sum_probs=31.7
Q ss_pred CCCCcEEEEC-CChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 25 PPSNSVIIVG-AGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 25 ~~~~dViIIG-aGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
+...+|+||| .|..|-+.|..|+++|+ +|++++++
T Consensus 96 ~~~~~I~IiGG~GlmG~slA~~l~~~G~-~V~~~d~~ 131 (374)
T PRK11199 96 PDLRPVVIVGGKGQLGRLFAKMLTLSGY-QVRILEQD 131 (374)
T ss_pred cccceEEEEcCCChhhHHHHHHHHHCCC-eEEEeCCC
Confidence 4567899999 89999999999999999 89999975
No 468
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=90.83 E-value=0.44 Score=43.44 Aligned_cols=33 Identities=27% Similarity=0.348 Sum_probs=30.0
Q ss_pred CcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 28 NSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 28 ~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
.+|+|+|+|=++.++++.|++.|.++|+|+.++
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~ 155 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDAGFTDGTIVARN 155 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 489999999999999999999998569999875
No 469
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=90.62 E-value=0.41 Score=44.10 Aligned_cols=35 Identities=26% Similarity=0.436 Sum_probs=31.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
...+|+|||.|-.|.+.|..|+..|. +|++++++.
T Consensus 150 ~gk~v~IiG~G~iG~avA~~L~~~G~-~V~v~~R~~ 184 (287)
T TIGR02853 150 HGSNVMVLGFGRTGMTIARTFSALGA-RVFVGARSS 184 (287)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHCCC-EEEEEeCCH
Confidence 35789999999999999999999999 899998853
No 470
>PTZ00117 malate dehydrogenase; Provisional
Probab=90.56 E-value=0.44 Score=44.71 Aligned_cols=36 Identities=17% Similarity=0.321 Sum_probs=31.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
+..+|+|||||-.|.+.|+.|+..|..+++|+|.+.
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~ 39 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIK 39 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCC
Confidence 567999999999999999999999933799999754
No 471
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=90.47 E-value=0.4 Score=42.25 Aligned_cols=31 Identities=29% Similarity=0.378 Sum_probs=27.8
Q ss_pred cEEEEC-CChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 29 SVIIVG-AGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 29 dViIIG-aGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
+|.||| +|..|.+.|..|+++|+ +|+++.++
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~-~V~v~~r~ 33 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGN-KIIIGSRD 33 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCC-EEEEEEcC
Confidence 699997 79999999999999999 89998653
No 472
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=90.44 E-value=0.38 Score=50.57 Aligned_cols=35 Identities=23% Similarity=0.474 Sum_probs=31.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
.-.+|.|||||..|...|+.++.+|+ +|+++|.+.
T Consensus 334 ~i~~v~ViGaG~MG~gIA~~~a~~G~-~V~l~d~~~ 368 (737)
T TIGR02441 334 PVKTLAVLGAGLMGAGIAQVSVDKGL-KTVLKDATP 368 (737)
T ss_pred cccEEEEECCCHhHHHHHHHHHhCCC-cEEEecCCH
Confidence 44679999999999999999999999 899999863
No 473
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=90.42 E-value=0.34 Score=47.98 Aligned_cols=35 Identities=17% Similarity=0.274 Sum_probs=31.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
+..+|+|||+|.+|+-.|..|++.+. +|+++.+++
T Consensus 203 ~gk~VvVVG~G~Sg~diA~~L~~~a~-~V~l~~r~~ 237 (461)
T PLN02172 203 KNEVVVVIGNFASGADISRDIAKVAK-EVHIASRAS 237 (461)
T ss_pred CCCEEEEECCCcCHHHHHHHHHHhCC-eEEEEEeec
Confidence 46789999999999999999999998 799998754
No 474
>PRK06223 malate dehydrogenase; Reviewed
Probab=90.41 E-value=0.44 Score=44.53 Aligned_cols=34 Identities=24% Similarity=0.380 Sum_probs=29.6
Q ss_pred CcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 28 NSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 28 ~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
.+|+|||+|..|...|+.|+..|..+|+++|.+.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~ 36 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVE 36 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCC
Confidence 5899999999999999999998742699999743
No 475
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=90.30 E-value=0.48 Score=47.40 Aligned_cols=37 Identities=19% Similarity=0.277 Sum_probs=30.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSR 62 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~ 62 (448)
...+|+|||||..|+-+|..+.+.|.++|+++|..++
T Consensus 282 ~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~ 318 (485)
T TIGR01317 282 KGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPK 318 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCC
Confidence 4579999999999999998888887547999987643
No 476
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=90.26 E-value=0.51 Score=41.82 Aligned_cols=35 Identities=26% Similarity=0.418 Sum_probs=32.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
+..+|+|||.|-.|..+|..|++.|..+++|+|.+
T Consensus 10 ~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D 44 (231)
T cd00755 10 RNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFD 44 (231)
T ss_pred hCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 45789999999999999999999998889999975
No 477
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.21 E-value=0.46 Score=47.38 Aligned_cols=33 Identities=36% Similarity=0.581 Sum_probs=30.0
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
..+|.|+|.|-+|+++|..|.+.|. +|++.|++
T Consensus 15 ~~~v~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~ 47 (473)
T PRK00141 15 SGRVLVAGAGVSGRGIAAMLSELGC-DVVVADDN 47 (473)
T ss_pred CCeEEEEccCHHHHHHHHHHHHCCC-EEEEECCC
Confidence 3469999999999999999999999 79999964
No 478
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=90.05 E-value=0.48 Score=43.28 Aligned_cols=34 Identities=32% Similarity=0.471 Sum_probs=30.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
...+++|+|+|-+|.+.|+.|++.|. +|+|+.++
T Consensus 116 ~~k~vliiGaGg~g~aia~~L~~~g~-~v~v~~R~ 149 (270)
T TIGR00507 116 PNQRVLIIGAGGAARAVALPLLKADC-NVIIANRT 149 (270)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 45689999999999999999999999 89999764
No 479
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.03 E-value=0.4 Score=48.22 Aligned_cols=34 Identities=21% Similarity=0.366 Sum_probs=30.8
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
..+|.|||.|.+|+++|..|.+.|. +|.+.|.+.
T Consensus 7 ~~~i~v~G~G~sG~s~a~~L~~~G~-~v~~~D~~~ 40 (498)
T PRK02006 7 GPMVLVLGLGESGLAMARWCARHGA-RLRVADTRE 40 (498)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCCC-EEEEEcCCC
Confidence 4579999999999999999999999 899999754
No 480
>PRK06153 hypothetical protein; Provisional
Probab=89.98 E-value=0.4 Score=45.45 Aligned_cols=35 Identities=11% Similarity=0.327 Sum_probs=32.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
+..+|+|||.|=.|..+|..|++.|..+++|+|.+
T Consensus 175 ~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D 209 (393)
T PRK06153 175 EGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD 209 (393)
T ss_pred hhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence 35689999999999999999999998889999975
No 481
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=89.94 E-value=0.51 Score=43.87 Aligned_cols=32 Identities=16% Similarity=0.414 Sum_probs=28.6
Q ss_pred cEEEECCChHHHHHHHHHHHcCCC-cEEEEecC
Q 013178 29 SVIIVGAGMSGFMAAKTLEEAGYK-DFIILEAS 60 (448)
Q Consensus 29 dViIIGaGiaGL~aA~~L~~~G~~-~V~vlE~~ 60 (448)
+|+|||+|-.|.++|+.|...+.. +++|+|..
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~ 33 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVN 33 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 589999999999999999998874 79999974
No 482
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.93 E-value=0.4 Score=46.98 Aligned_cols=33 Identities=27% Similarity=0.433 Sum_probs=30.2
Q ss_pred CcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 28 NSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 28 ~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
.+|+|||-|.+|.++|..|.+.|. +|++.|.+.
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G~-~V~g~D~~~ 36 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKGV-YVIGVDKSL 36 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence 479999999999999999999999 799999753
No 483
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=89.92 E-value=0.54 Score=44.97 Aligned_cols=35 Identities=26% Similarity=0.474 Sum_probs=32.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
+..+|+|||+|-.|..+|..|+..|..+++|+|.+
T Consensus 40 ~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 40 HNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 56789999999999999999999998789999975
No 484
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=89.84 E-value=0.58 Score=42.40 Aligned_cols=38 Identities=21% Similarity=0.442 Sum_probs=31.9
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHc----CC------CcEEEEecCC
Q 013178 24 SPPSNSVIIVGAGMSGFMAAKTLEEA----GY------KDFIILEASS 61 (448)
Q Consensus 24 ~~~~~dViIIGaGiaGL~aA~~L~~~----G~------~~V~vlE~~~ 61 (448)
.-...+|+|+|||-+|..+|..|.+. |. +++.++|++.
T Consensus 22 ~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~G 69 (279)
T cd05312 22 PLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKG 69 (279)
T ss_pred ChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCC
Confidence 34578999999999999999999987 76 4788888763
No 485
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=89.83 E-value=0.56 Score=40.42 Aligned_cols=34 Identities=21% Similarity=0.393 Sum_probs=30.0
Q ss_pred CCCcEEEECC-ChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 26 PSNSVIIVGA-GMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 26 ~~~dViIIGa-GiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
+..+++|+|| |-.|..+|..|++.|. +|+++.++
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~-~V~l~~R~ 61 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGA-RVVLVGRD 61 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence 4578999997 9999999999999998 89999654
No 486
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=89.82 E-value=0.45 Score=51.42 Aligned_cols=35 Identities=23% Similarity=0.390 Sum_probs=31.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
...+|+|||||.+|+-||..+.+.|. +|+++.+++
T Consensus 446 ~Gk~VvVIGGG~tA~D~A~ta~R~Ga-~Vtlv~rr~ 480 (944)
T PRK12779 446 KGKEVFVIGGGNTAMDAARTAKRLGG-NVTIVYRRT 480 (944)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEEecC
Confidence 45789999999999999999999999 799998764
No 487
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=89.82 E-value=0.51 Score=44.98 Aligned_cols=32 Identities=31% Similarity=0.502 Sum_probs=27.7
Q ss_pred cEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 29 SVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 29 dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
.|+|+|+|+.||.++..++..|.++|++.|.+
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~ 202 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRS 202 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Confidence 79999999999999888888887678888764
No 488
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=89.73 E-value=0.41 Score=44.34 Aligned_cols=31 Identities=26% Similarity=0.435 Sum_probs=28.8
Q ss_pred cEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 29 SVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 29 dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
+|.|||.|..|...|..|++.|+ +|++++++
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~-~V~~~dr~ 31 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGY-QLHVTTIG 31 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCC-eEEEEcCC
Confidence 48999999999999999999999 89999875
No 489
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=89.71 E-value=0.59 Score=43.03 Aligned_cols=35 Identities=14% Similarity=0.293 Sum_probs=31.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
+..+|+|||+|=++.+.|+.|++.|.++|+|+.++
T Consensus 123 ~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt 157 (288)
T PRK12749 123 KGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRR 157 (288)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 44689999999999999999999997689999875
No 490
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=89.66 E-value=0.5 Score=49.43 Aligned_cols=35 Identities=26% Similarity=0.270 Sum_probs=30.8
Q ss_pred CCCcEEEECCChHHHHHHHHHH-HcCCCcEEEEecCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLE-EAGYKDFIILEASS 61 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~-~~G~~~V~vlE~~~ 61 (448)
+-.+|+|||||..|..-|..++ ++|+ +|+++|.++
T Consensus 303 ~i~~v~ViGaG~mG~~iA~~~a~~~G~-~V~l~d~~~ 338 (699)
T TIGR02440 303 KIKKVGILGGGLMGGGIASVTATKAGI-PVRIKDINP 338 (699)
T ss_pred cccEEEEECCcHHHHHHHHHHHHHcCC-eEEEEeCCH
Confidence 4467999999999999999998 5899 899999863
No 491
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=89.66 E-value=0.53 Score=46.92 Aligned_cols=35 Identities=20% Similarity=0.314 Sum_probs=29.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
...+|+|||||..|+-+|..+.+.|.++|+++|..
T Consensus 280 ~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~ 314 (471)
T PRK12810 280 KGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIM 314 (471)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEcccc
Confidence 45689999999999999999988886468866654
No 492
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=89.55 E-value=0.64 Score=42.49 Aligned_cols=34 Identities=38% Similarity=0.424 Sum_probs=31.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
....|+|||.|..|-+.|..|+++|+ .|.++.++
T Consensus 2 ~~~~v~IvG~GliG~s~a~~l~~~g~-~v~i~g~d 35 (279)
T COG0287 2 ASMKVGIVGLGLMGGSLARALKEAGL-VVRIIGRD 35 (279)
T ss_pred CCcEEEEECCchHHHHHHHHHHHcCC-eEEEEeec
Confidence 35689999999999999999999999 79899876
No 493
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=89.49 E-value=0.62 Score=41.35 Aligned_cols=32 Identities=28% Similarity=0.492 Sum_probs=29.8
Q ss_pred cEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 29 SVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 29 dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
+|+|||+|-.|...+..|+..|.++++|+|.+
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D 32 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMD 32 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 58999999999999999999999889999975
No 494
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=89.43 E-value=0.65 Score=42.40 Aligned_cols=35 Identities=31% Similarity=0.450 Sum_probs=31.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
+...|+|+|||=++-++++.|++.|.++|+|+-|.
T Consensus 125 ~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt 159 (283)
T COG0169 125 TGKRVLILGAGGAARAVAFALAEAGAKRITVVNRT 159 (283)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 45789999999999999999999996579999874
No 495
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=89.39 E-value=0.56 Score=45.18 Aligned_cols=36 Identities=31% Similarity=0.334 Sum_probs=32.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
-+..+|+|||+|-.|..+|..|++.|.++++|++.+
T Consensus 133 l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 133 LLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred HhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 356789999999999999999999998789999875
No 496
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=89.34 E-value=0.52 Score=49.41 Aligned_cols=34 Identities=29% Similarity=0.368 Sum_probs=30.7
Q ss_pred CCCcEEEECCChHHHHHHHHHH-HcCCCcEEEEecC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLE-EAGYKDFIILEAS 60 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~-~~G~~~V~vlE~~ 60 (448)
.-.+|+|||||..|...|+.++ .+|+ +|+++|.+
T Consensus 308 ~i~~v~ViGaG~mG~giA~~~a~~~G~-~V~l~d~~ 342 (708)
T PRK11154 308 PVNKVGVLGGGLMGGGIAYVTATKAGL-PVRIKDIN 342 (708)
T ss_pred cccEEEEECCchhhHHHHHHHHHHcCC-eEEEEeCC
Confidence 3467999999999999999999 8899 89999985
No 497
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=89.33 E-value=0.55 Score=43.59 Aligned_cols=32 Identities=28% Similarity=0.521 Sum_probs=29.5
Q ss_pred CcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 28 NSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 28 ~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
.+|.|||.|..|...|..|++.|+ +|.+++++
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~-~v~~~d~~ 34 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGY-SLVVYDRN 34 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCC-eEEEEcCC
Confidence 479999999999999999999999 79999875
No 498
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=89.23 E-value=0.61 Score=44.46 Aligned_cols=36 Identities=28% Similarity=0.299 Sum_probs=32.8
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
-+..+|+|||+|-.|..+|..|+..|..+++|+|.+
T Consensus 26 L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D 61 (355)
T PRK05597 26 LFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDD 61 (355)
T ss_pred HhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 356899999999999999999999999889999975
No 499
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=89.16 E-value=0.61 Score=46.39 Aligned_cols=36 Identities=14% Similarity=0.215 Sum_probs=31.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
...+|+|||+|..|+-+|..+.+.|.++|+|+++++
T Consensus 281 ~gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~ 316 (467)
T TIGR01318 281 EGKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRD 316 (467)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecC
Confidence 457999999999999999999999953699999864
No 500
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=89.13 E-value=0.6 Score=44.99 Aligned_cols=36 Identities=22% Similarity=0.301 Sum_probs=32.0
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
-....|+|||.|..|..+|..|+..|. +|+++|.+.
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp 228 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDP 228 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCCh
Confidence 346689999999999999999999999 899999753
Done!