Query 013178
Match_columns 448
No_of_seqs 214 out of 2011
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 05:39:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013178.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013178hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b37_A Protein (polyamine oxid 100.0 3.2E-47 1.1E-51 376.8 41.4 421 25-448 2-430 (472)
2 1s3e_A Amine oxidase [flavin-c 100.0 1.6E-43 5.5E-48 354.6 24.9 396 26-448 3-426 (520)
3 1rsg_A FMS1 protein; FAD bindi 100.0 9.5E-42 3.3E-46 341.1 31.1 395 26-448 7-479 (516)
4 4gut_A Lysine-specific histone 100.0 9.2E-41 3.1E-45 343.5 38.1 398 25-448 334-749 (776)
5 2z3y_A Lysine-specific histone 100.0 1.2E-40 3.9E-45 341.0 36.9 397 24-448 104-630 (662)
6 2vvm_A Monoamine oxidase N; FA 100.0 1.4E-41 4.8E-46 338.8 28.5 394 28-448 40-457 (495)
7 2xag_A Lysine-specific histone 100.0 1.8E-40 6.3E-45 343.0 37.5 397 24-448 275-801 (852)
8 2yg5_A Putrescine oxidase; oxi 100.0 3.1E-41 1.1E-45 332.7 22.5 395 26-448 4-423 (453)
9 2iid_A L-amino-acid oxidase; f 100.0 4.1E-40 1.4E-44 328.4 28.3 396 23-448 29-457 (498)
10 2jae_A L-amino acid oxidase; o 100.0 8.3E-39 2.8E-43 318.3 30.6 404 24-448 8-458 (489)
11 3k7m_X 6-hydroxy-L-nicotine ox 100.0 2.8E-39 9.5E-44 316.7 25.3 379 27-448 1-398 (431)
12 3i6d_A Protoporphyrinogen oxid 100.0 2.7E-37 9.2E-42 306.1 25.8 393 26-448 4-443 (470)
13 2ivd_A PPO, PPOX, protoporphyr 100.0 1.6E-36 5.6E-41 301.0 26.3 401 18-448 7-448 (478)
14 3lov_A Protoporphyrinogen oxid 100.0 5.9E-35 2E-39 289.5 25.6 387 27-448 4-440 (475)
15 1sez_A Protoporphyrinogen oxid 100.0 7.7E-36 2.6E-40 298.0 19.3 399 24-448 10-468 (504)
16 3ayj_A Pro-enzyme of L-phenyla 100.0 7.5E-36 2.6E-40 300.3 16.8 221 217-448 338-652 (721)
17 4gde_A UDP-galactopyranose mut 100.0 4E-34 1.4E-38 286.4 21.9 391 21-447 4-449 (513)
18 3nks_A Protoporphyrinogen oxid 100.0 2.7E-34 9.2E-39 285.0 14.3 397 27-448 2-449 (477)
19 3ka7_A Oxidoreductase; structu 100.0 1.2E-31 4.1E-36 262.0 24.9 382 28-448 1-399 (425)
20 4dsg_A UDP-galactopyranose mut 100.0 3.1E-30 1.1E-34 254.7 26.4 383 22-447 4-425 (484)
21 3qj4_A Renalase; FAD/NAD(P)-bi 100.0 3.6E-30 1.2E-34 244.0 22.2 207 220-448 106-317 (342)
22 3nrn_A Uncharacterized protein 100.0 9.7E-29 3.3E-33 240.9 23.1 370 28-448 1-379 (421)
23 4dgk_A Phytoene dehydrogenase; 100.0 1.5E-27 5E-32 238.0 28.5 282 27-328 1-318 (501)
24 2b9w_A Putative aminooxidase; 100.0 5.2E-28 1.8E-32 236.1 17.7 378 25-448 4-401 (424)
25 1yvv_A Amine oxidase, flavin-c 99.9 8E-25 2.7E-29 206.7 26.1 298 27-448 2-302 (336)
26 3hdq_A UDP-galactopyranose mut 99.9 2.5E-21 8.7E-26 184.0 15.3 314 23-394 25-352 (397)
27 1v0j_A UDP-galactopyranose mut 99.9 3.5E-23 1.2E-27 199.4 2.0 254 24-328 4-275 (399)
28 2e1m_A L-glutamate oxidase; L- 99.8 9E-20 3.1E-24 171.9 17.3 84 21-108 38-132 (376)
29 2bcg_G Secretory pathway GDP d 99.8 4.5E-20 1.5E-24 180.8 12.2 252 24-287 8-299 (453)
30 1d5t_A Guanine nucleotide diss 99.8 3.2E-19 1.1E-23 173.6 16.4 245 24-287 3-289 (433)
31 3p1w_A Rabgdi protein; GDI RAB 99.8 6.2E-19 2.1E-23 170.8 14.3 250 20-286 13-312 (475)
32 1i8t_A UDP-galactopyranose mut 99.8 1.2E-19 4.1E-24 172.6 9.1 248 27-329 1-262 (367)
33 2bi7_A UDP-galactopyranose mut 99.8 3.1E-19 1.1E-23 170.7 10.3 246 27-324 3-260 (384)
34 3kkj_A Amine oxidase, flavin-c 99.6 3.6E-13 1.2E-17 123.2 23.9 60 26-86 1-60 (336)
35 1vg0_A RAB proteins geranylger 99.5 3.8E-12 1.3E-16 126.9 27.0 91 217-329 369-462 (650)
36 2e1m_C L-glutamate oxidase; L- 99.5 5.7E-14 2E-18 118.6 7.6 104 344-448 18-125 (181)
37 3nyc_A D-arginine dehydrogenas 99.4 3.1E-13 1.1E-17 129.3 9.9 56 225-287 153-208 (381)
38 3dme_A Conserved exported prot 99.4 9E-13 3.1E-17 125.5 12.3 57 225-287 149-208 (369)
39 3v76_A Flavoprotein; structura 99.4 5.8E-13 2E-17 128.3 10.3 58 223-287 129-186 (417)
40 3ps9_A TRNA 5-methylaminomethy 99.4 2.1E-11 7.1E-16 125.4 20.5 56 226-287 417-472 (676)
41 3dje_A Fructosyl amine: oxygen 99.4 2.3E-12 8E-17 125.7 12.5 58 225-288 160-221 (438)
42 2e1m_B L-glutamate oxidase; L- 99.3 3.8E-14 1.3E-18 110.9 -2.2 105 273-397 4-109 (130)
43 2vou_A 2,6-dihydroxypyridine h 99.3 1.9E-11 6.6E-16 117.6 15.8 55 226-288 99-153 (397)
44 3pvc_A TRNA 5-methylaminomethy 99.3 6.2E-11 2.1E-15 122.0 20.4 57 225-287 411-468 (689)
45 2gqf_A Hypothetical protein HI 99.3 6.6E-12 2.3E-16 120.4 11.4 55 225-286 108-166 (401)
46 3rp8_A Flavoprotein monooxygen 99.3 2.4E-11 8.2E-16 117.3 15.1 55 226-288 127-181 (407)
47 1y56_B Sarcosine oxidase; dehy 99.3 1.3E-11 4.3E-16 118.2 12.2 56 225-287 148-204 (382)
48 2uzz_A N-methyl-L-tryptophan o 99.3 3.2E-11 1.1E-15 115.0 14.7 56 226-288 149-204 (372)
49 2oln_A NIKD protein; flavoprot 99.3 8.9E-11 3.1E-15 112.9 16.2 54 226-286 153-206 (397)
50 1ryi_A Glycine oxidase; flavop 99.3 4.6E-11 1.6E-15 114.2 13.9 55 226-287 164-218 (382)
51 2i0z_A NAD(FAD)-utilizing dehy 99.3 2.9E-11 1E-15 118.0 12.3 57 224-286 132-189 (447)
52 2xdo_A TETX2 protein; tetracyc 99.2 5.5E-11 1.9E-15 114.4 13.7 56 226-289 128-183 (398)
53 2gag_B Heterotetrameric sarcos 99.2 4.6E-11 1.6E-15 115.2 12.6 55 226-287 174-229 (405)
54 4at0_A 3-ketosteroid-delta4-5a 99.2 4.9E-11 1.7E-15 118.4 12.6 42 25-67 39-80 (510)
55 2x3n_A Probable FAD-dependent 99.2 4.6E-11 1.6E-15 115.0 12.0 57 226-288 107-166 (399)
56 2gf3_A MSOX, monomeric sarcosi 99.2 1.6E-10 5.4E-15 110.8 14.7 55 226-287 150-204 (389)
57 3nlc_A Uncharacterized protein 99.2 4.9E-11 1.7E-15 118.1 11.2 57 225-287 219-276 (549)
58 2qa1_A PGAE, polyketide oxygen 99.2 1.1E-10 3.8E-15 115.3 12.9 56 227-288 107-165 (500)
59 1qo8_A Flavocytochrome C3 fuma 99.2 1.9E-10 6.4E-15 115.7 14.6 42 24-66 118-159 (566)
60 3cgv_A Geranylgeranyl reductas 99.2 3.6E-11 1.2E-15 115.6 8.9 38 27-65 4-41 (397)
61 1y0p_A Fumarate reductase flav 99.2 3.3E-10 1.1E-14 114.1 15.6 41 25-66 124-164 (571)
62 2qa2_A CABE, polyketide oxygen 99.2 2.4E-10 8.1E-15 112.9 13.4 56 227-288 108-166 (499)
63 4ap3_A Steroid monooxygenase; 99.1 1.4E-10 4.9E-15 115.6 11.6 43 25-68 19-61 (549)
64 3fmw_A Oxygenase; mithramycin, 99.1 1.2E-10 4.2E-15 116.6 10.9 57 226-288 148-207 (570)
65 2qcu_A Aerobic glycerol-3-phos 99.1 1.1E-08 3.6E-13 101.4 24.1 57 225-287 148-209 (501)
66 3alj_A 2-methyl-3-hydroxypyrid 99.1 3.9E-10 1.3E-14 107.7 13.3 54 226-288 107-160 (379)
67 1w4x_A Phenylacetone monooxyge 99.1 2.3E-10 7.7E-15 114.5 11.8 43 24-67 13-55 (542)
68 3gwf_A Cyclohexanone monooxyge 99.1 1.6E-10 5.4E-15 115.1 10.4 43 26-69 7-50 (540)
69 3nix_A Flavoprotein/dehydrogen 99.1 2.6E-10 9E-15 110.5 11.6 55 227-287 107-165 (421)
70 1pj5_A N,N-dimethylglycine oxi 99.1 2.1E-10 7.2E-15 120.6 11.5 56 225-287 150-206 (830)
71 3i3l_A Alkylhalidase CMLS; fla 99.1 6E-10 2E-14 111.9 14.1 56 227-288 129-188 (591)
72 3oz2_A Digeranylgeranylglycero 99.1 1.4E-10 4.9E-15 111.2 9.1 39 26-65 3-41 (397)
73 3da1_A Glycerol-3-phosphate de 99.1 1.5E-10 5.2E-15 115.9 9.0 41 26-67 17-57 (561)
74 3ihg_A RDME; flavoenzyme, anth 99.1 6.5E-10 2.2E-14 111.2 13.5 56 227-288 121-183 (535)
75 2zbw_A Thioredoxin reductase; 99.1 3.5E-10 1.2E-14 106.0 10.1 43 245-287 78-120 (335)
76 4hb9_A Similarities with proba 99.1 5.9E-10 2E-14 107.5 11.9 43 246-288 123-166 (412)
77 3c96_A Flavin-containing monoo 99.1 6.2E-10 2.1E-14 107.5 11.8 38 26-64 3-41 (410)
78 3ab1_A Ferredoxin--NADP reduct 99.0 6E-10 2.1E-14 105.6 10.4 41 25-66 12-52 (360)
79 3axb_A Putative oxidoreductase 99.0 1.6E-09 5.6E-14 105.8 13.5 56 225-287 180-253 (448)
80 1rp0_A ARA6, thiazole biosynth 99.0 1.1E-09 3.7E-14 100.0 11.2 39 26-65 38-77 (284)
81 2bry_A NEDD9 interacting prote 99.0 1.1E-09 3.6E-14 108.2 11.7 41 24-65 89-129 (497)
82 3lzw_A Ferredoxin--NADP reduct 99.0 2.7E-10 9.2E-15 106.6 7.1 40 26-66 6-45 (332)
83 4a9w_A Monooxygenase; baeyer-v 99.0 7.3E-10 2.5E-14 104.7 10.1 42 245-287 89-131 (357)
84 1k0i_A P-hydroxybenzoate hydro 99.0 8.8E-10 3E-14 105.8 10.5 57 227-289 104-164 (394)
85 2rgh_A Alpha-glycerophosphate 99.0 3.9E-09 1.3E-13 105.9 15.5 39 26-65 31-69 (571)
86 3uox_A Otemo; baeyer-villiger 99.0 9.4E-10 3.2E-14 109.6 10.9 41 25-66 7-47 (545)
87 3f8d_A Thioredoxin reductase ( 99.0 1.3E-09 4.5E-14 101.4 11.3 42 245-287 83-124 (323)
88 3o0h_A Glutathione reductase; 99.0 4.2E-09 1.4E-13 103.8 15.3 54 227-286 233-286 (484)
89 2gv8_A Monooxygenase; FMO, FAD 99.0 1.4E-09 4.8E-14 106.2 11.6 44 24-67 3-47 (447)
90 3e1t_A Halogenase; flavoprotei 99.0 2.3E-09 7.7E-14 106.5 13.0 56 227-288 112-172 (512)
91 2r0c_A REBC; flavin adenine di 99.0 1.2E-09 3.9E-14 109.5 10.6 66 22-106 21-86 (549)
92 3atr_A Conserved archaeal prot 99.0 9.9E-10 3.4E-14 107.4 9.1 37 26-63 5-41 (453)
93 1d4d_A Flavocytochrome C fumar 99.0 3.4E-09 1.2E-13 106.5 12.8 40 26-66 125-164 (572)
94 2wdq_A Succinate dehydrogenase 98.9 1.5E-08 5.2E-13 101.8 16.0 39 26-65 6-44 (588)
95 2gmh_A Electron transfer flavo 98.9 5.5E-09 1.9E-13 105.1 11.4 41 25-66 33-79 (584)
96 2h88_A Succinate dehydrogenase 98.9 3.8E-08 1.3E-12 99.1 16.6 40 25-65 16-55 (621)
97 2dkh_A 3-hydroxybenzoate hydro 98.9 7.6E-09 2.6E-13 105.4 11.5 38 25-63 30-68 (639)
98 3c4n_A Uncharacterized protein 98.9 1.4E-09 5E-14 104.6 5.8 56 225-287 171-235 (405)
99 2bs2_A Quinol-fumarate reducta 98.9 5.7E-08 1.9E-12 98.6 17.6 39 26-65 4-42 (660)
100 3itj_A Thioredoxin reductase 1 98.9 3.2E-09 1.1E-13 99.5 8.0 39 22-61 17-55 (338)
101 1xdi_A RV3303C-LPDA; reductase 98.9 6.3E-09 2.1E-13 103.0 10.0 53 227-285 224-276 (499)
102 3lxd_A FAD-dependent pyridine 98.9 1.2E-08 4.1E-13 98.5 11.5 54 226-285 194-248 (415)
103 2aqj_A Tryptophan halogenase, 98.8 4.3E-08 1.5E-12 98.0 15.6 57 226-289 165-223 (538)
104 3fbs_A Oxidoreductase; structu 98.8 3.5E-08 1.2E-12 90.5 13.8 34 27-61 2-35 (297)
105 2xve_A Flavin-containing monoo 98.8 2.6E-08 8.8E-13 97.5 12.9 39 28-67 3-47 (464)
106 2gjc_A Thiazole biosynthetic e 98.8 2.8E-08 9.6E-13 91.2 12.1 38 27-65 65-104 (326)
107 2ywl_A Thioredoxin reductase r 98.8 2.7E-08 9.3E-13 84.1 11.3 40 245-286 69-108 (180)
108 2v3a_A Rubredoxin reductase; a 98.8 1.6E-08 5.4E-13 96.6 10.3 53 227-285 188-240 (384)
109 3iwa_A FAD-dependent pyridine 98.8 5.9E-09 2E-13 102.5 7.4 55 226-286 202-256 (472)
110 3d1c_A Flavin-containing putat 98.8 3.2E-08 1.1E-12 93.9 12.2 42 245-287 101-142 (369)
111 3oc4_A Oxidoreductase, pyridin 98.8 2.2E-08 7.6E-13 97.8 11.3 53 226-285 189-241 (452)
112 2weu_A Tryptophan 5-halogenase 98.8 6.5E-08 2.2E-12 96.1 14.8 56 226-288 173-230 (511)
113 1kf6_A Fumarate reductase flav 98.8 1.7E-07 5.9E-12 94.4 17.8 39 26-65 4-44 (602)
114 2zxi_A TRNA uridine 5-carboxym 98.8 1.2E-08 4.2E-13 101.4 8.9 55 227-287 124-179 (637)
115 2e5v_A L-aspartate oxidase; ar 98.8 8.9E-08 3E-12 93.8 14.2 35 29-65 1-35 (472)
116 3ces_A MNMG, tRNA uridine 5-ca 98.8 1.3E-08 4.5E-13 101.6 8.2 55 227-287 125-180 (651)
117 2e4g_A Tryptophan halogenase; 98.8 1.2E-07 4.3E-12 94.8 15.4 56 226-288 194-252 (550)
118 3fg2_P Putative rubredoxin red 98.7 1E-08 3.5E-13 98.6 7.1 55 226-286 184-239 (404)
119 1v59_A Dihydrolipoamide dehydr 98.7 1.8E-08 6E-13 99.3 8.2 41 26-67 4-44 (478)
120 2q0l_A TRXR, thioredoxin reduc 98.7 5.7E-08 1.9E-12 89.8 11.2 41 245-286 72-112 (311)
121 1chu_A Protein (L-aspartate ox 98.7 4.4E-08 1.5E-12 97.5 10.4 40 25-66 6-45 (540)
122 3s5w_A L-ornithine 5-monooxyge 98.7 5.1E-08 1.7E-12 95.6 10.2 38 26-64 29-71 (463)
123 3cp8_A TRNA uridine 5-carboxym 98.7 2.2E-08 7.5E-13 100.0 7.3 41 24-65 18-59 (641)
124 2pyx_A Tryptophan halogenase; 98.7 1.6E-07 5.5E-12 93.5 13.6 56 227-288 176-233 (526)
125 3fpz_A Thiazole biosynthetic e 98.7 1.1E-08 3.9E-13 95.3 4.8 69 26-106 64-134 (326)
126 1vdc_A NTR, NADPH dependent th 98.7 1.2E-07 4E-12 88.6 11.4 41 245-287 83-123 (333)
127 1fl2_A Alkyl hydroperoxide red 98.7 1.5E-07 5E-12 87.0 12.0 42 245-286 69-113 (310)
128 3ntd_A FAD-dependent pyridine 98.6 9E-08 3.1E-12 96.3 10.2 36 28-64 2-39 (565)
129 1hyu_A AHPF, alkyl hydroperoxi 98.6 2.1E-07 7.3E-12 92.3 12.6 42 245-286 280-324 (521)
130 1jnr_A Adenylylsulfate reducta 98.6 5.3E-07 1.8E-11 91.7 15.6 36 26-62 21-60 (643)
131 1ebd_A E3BD, dihydrolipoamide 98.6 2.1E-07 7.3E-12 90.9 11.8 40 26-67 2-41 (455)
132 1q1r_A Putidaredoxin reductase 98.6 2.2E-07 7.4E-12 90.0 11.5 53 227-285 192-247 (431)
133 1y56_A Hypothetical protein PH 98.6 4.4E-08 1.5E-12 96.6 6.6 40 27-68 108-147 (493)
134 2a8x_A Dihydrolipoyl dehydroge 98.6 7.3E-08 2.5E-12 94.5 8.0 39 27-67 3-41 (464)
135 4gcm_A TRXR, thioredoxin reduc 98.6 2.7E-08 9.1E-13 92.1 4.3 42 26-69 5-46 (312)
136 3ef6_A Toluene 1,2-dioxygenase 98.6 7.5E-08 2.6E-12 92.7 7.5 52 228-285 187-238 (410)
137 1pn0_A Phenol 2-monooxygenase; 98.6 1.5E-07 5.2E-12 96.0 10.0 62 26-106 7-73 (665)
138 3ics_A Coenzyme A-disulfide re 98.6 1.4E-07 5E-12 95.2 9.2 40 24-64 33-74 (588)
139 3klj_A NAD(FAD)-dependent dehy 98.5 1.5E-07 5.1E-12 89.7 8.6 40 23-63 5-44 (385)
140 4fk1_A Putative thioredoxin re 98.5 5.5E-08 1.9E-12 89.7 4.9 41 24-66 3-43 (304)
141 1c0p_A D-amino acid oxidase; a 98.5 9.4E-08 3.2E-12 90.5 6.1 40 24-64 3-42 (363)
142 3urh_A Dihydrolipoyl dehydroge 98.5 1E-07 3.5E-12 94.1 5.5 44 25-69 23-66 (491)
143 4a5l_A Thioredoxin reductase; 98.5 7.3E-08 2.5E-12 89.2 4.0 36 25-61 2-37 (314)
144 3l8k_A Dihydrolipoyl dehydroge 98.5 5.2E-08 1.8E-12 95.5 2.9 43 26-69 3-45 (466)
145 3cty_A Thioredoxin reductase; 98.4 9E-08 3.1E-12 88.8 3.9 43 24-68 13-55 (319)
146 2vdc_G Glutamate synthase [NAD 98.4 2E-07 7E-12 90.6 6.2 43 24-67 119-161 (456)
147 3jsk_A Cypbp37 protein; octame 98.4 2E-07 6.8E-12 86.0 5.5 39 26-65 78-118 (344)
148 1mo9_A ORF3; nucleotide bindin 98.4 1.7E-07 5.9E-12 93.1 5.3 46 22-68 38-83 (523)
149 3qfa_A Thioredoxin reductase 1 98.4 2E-07 6.7E-12 92.6 4.7 47 21-68 26-80 (519)
150 2q7v_A Thioredoxin reductase; 98.4 1.8E-07 6.1E-12 87.1 4.1 43 25-69 6-48 (325)
151 4dna_A Probable glutathione re 98.4 1.5E-07 5E-12 92.3 3.5 41 26-68 4-44 (463)
152 3lad_A Dihydrolipoamide dehydr 98.4 3.2E-07 1.1E-11 90.2 5.7 40 26-66 2-41 (476)
153 3k30_A Histamine dehydrogenase 98.3 4.5E-07 1.6E-11 93.2 6.5 45 24-69 388-432 (690)
154 3g3e_A D-amino-acid oxidase; F 98.3 2.4E-07 8.3E-12 87.2 4.1 37 28-65 1-43 (351)
155 3r9u_A Thioredoxin reductase; 98.3 3.3E-07 1.1E-11 84.6 4.6 42 25-68 2-44 (315)
156 3dk9_A Grase, GR, glutathione 98.3 2.3E-07 7.8E-12 91.3 3.4 43 24-68 17-59 (478)
157 2qae_A Lipoamide, dihydrolipoy 98.3 4.1E-07 1.4E-11 89.2 5.1 41 27-68 2-42 (468)
158 1dxl_A Dihydrolipoamide dehydr 98.3 4.2E-07 1.4E-11 89.2 5.2 43 25-68 4-46 (470)
159 2r9z_A Glutathione amide reduc 98.3 3.3E-07 1.1E-11 89.7 4.1 52 228-285 209-261 (463)
160 1ojt_A Surface protein; redox- 98.3 2.6E-07 8.9E-12 90.9 3.1 43 25-68 4-46 (482)
161 3dgz_A Thioredoxin reductase 2 98.3 3.3E-07 1.1E-11 90.4 3.8 43 25-68 4-54 (488)
162 1zmd_A Dihydrolipoyl dehydroge 98.3 4.1E-07 1.4E-11 89.3 4.4 43 25-68 4-46 (474)
163 1zk7_A HGII, reductase, mercur 98.3 6.5E-07 2.2E-11 87.7 5.8 42 25-68 2-43 (467)
164 2hqm_A GR, grase, glutathione 98.3 3.1E-07 1E-11 90.3 3.4 42 25-68 9-50 (479)
165 2cul_A Glucose-inhibited divis 98.3 6.9E-07 2.4E-11 78.7 5.2 34 26-60 2-35 (232)
166 1ges_A Glutathione reductase; 98.3 3E-07 1E-11 89.6 2.9 42 25-68 2-43 (450)
167 1fec_A Trypanothione reductase 98.2 5.1E-07 1.8E-11 88.9 4.2 53 227-285 232-285 (490)
168 3pl8_A Pyranose 2-oxidase; sub 98.2 6.8E-07 2.3E-11 90.4 5.1 40 25-65 44-83 (623)
169 2wpf_A Trypanothione reductase 98.2 3.8E-07 1.3E-11 89.9 3.2 53 227-285 236-289 (495)
170 2yqu_A 2-oxoglutarate dehydrog 98.2 7.2E-07 2.5E-11 87.1 5.0 54 226-285 208-261 (455)
171 2a87_A TRXR, TR, thioredoxin r 98.2 6.5E-07 2.2E-11 83.6 4.4 42 24-67 11-52 (335)
172 3c4a_A Probable tryptophan hyd 98.2 1.2E-06 4E-11 83.5 6.0 35 28-63 1-37 (381)
173 3ihm_A Styrene monooxygenase A 98.2 7.2E-07 2.5E-11 86.4 4.5 35 26-61 21-55 (430)
174 4b63_A L-ornithine N5 monooxyg 98.2 2.4E-07 8.2E-12 91.4 1.2 40 25-65 37-76 (501)
175 1lvl_A Dihydrolipoamide dehydr 98.2 5.8E-07 2E-11 87.8 3.7 42 26-69 4-45 (458)
176 3ic9_A Dihydrolipoamide dehydr 98.2 3.5E-07 1.2E-11 90.2 2.0 40 27-68 8-47 (492)
177 1o94_A Tmadh, trimethylamine d 98.2 1.3E-06 4.4E-11 90.2 6.3 45 24-69 386-430 (729)
178 2eq6_A Pyruvate dehydrogenase 98.2 5.2E-07 1.8E-11 88.3 3.0 40 27-68 6-45 (464)
179 3dgh_A TRXR-1, thioredoxin red 98.2 8.4E-07 2.9E-11 87.3 4.3 34 25-59 7-40 (483)
180 1trb_A Thioredoxin reductase; 98.2 5.7E-07 2E-11 83.3 2.9 40 26-67 4-43 (320)
181 1onf_A GR, grase, glutathione 98.2 8.4E-07 2.9E-11 87.6 4.2 53 227-285 218-272 (500)
182 2yqu_A 2-oxoglutarate dehydrog 98.1 1.8E-05 6.2E-10 77.1 12.9 36 27-63 167-202 (455)
183 1ps9_A 2,4-dienoyl-COA reducta 98.1 2.5E-06 8.7E-11 87.3 5.8 42 25-67 371-412 (671)
184 3g5s_A Methylenetetrahydrofola 98.1 3.5E-06 1.2E-10 78.3 5.8 38 27-65 1-38 (443)
185 3gyx_A Adenylylsulfate reducta 98.0 3.7E-06 1.3E-10 85.2 5.2 38 26-64 21-64 (662)
186 3kd9_A Coenzyme A disulfide re 98.0 4.9E-06 1.7E-10 81.0 5.5 39 27-66 3-43 (449)
187 4b1b_A TRXR, thioredoxin reduc 98.0 2.6E-06 8.8E-11 84.4 3.2 54 226-285 263-316 (542)
188 3h28_A Sulfide-quinone reducta 98.0 3.7E-06 1.3E-10 81.4 4.1 38 27-65 2-41 (430)
189 1lqt_A FPRA; NADP+ derivative, 98.0 4.6E-06 1.6E-10 81.1 4.7 42 26-68 2-50 (456)
190 2eq6_A Pyruvate dehydrogenase 98.0 6.7E-05 2.3E-09 73.2 13.0 41 245-285 223-268 (464)
191 2bc0_A NADH oxidase; flavoprot 98.0 7.3E-06 2.5E-10 80.7 6.2 39 26-65 34-75 (490)
192 2gag_A Heterotetrameric sarcos 98.0 3.2E-06 1.1E-10 89.9 3.6 41 27-68 128-168 (965)
193 2gqw_A Ferredoxin reductase; f 98.0 7.4E-06 2.5E-10 78.6 5.9 40 25-64 5-45 (408)
194 1ges_A Glutathione reductase; 97.9 8.1E-05 2.8E-09 72.3 13.2 41 245-285 221-262 (450)
195 2r9z_A Glutathione amide reduc 97.9 9.3E-05 3.2E-09 72.2 13.6 36 27-63 166-201 (463)
196 1cjc_A Protein (adrenodoxin re 97.9 6E-06 2E-10 80.4 5.0 41 26-67 5-47 (460)
197 3h8l_A NADH oxidase; membrane 97.9 4.4E-06 1.5E-10 80.3 3.9 37 28-65 2-41 (409)
198 1gte_A Dihydropyrimidine dehyd 97.9 6.3E-06 2.2E-10 88.3 5.2 42 26-67 186-227 (1025)
199 2x8g_A Thioredoxin glutathione 97.9 8.1E-06 2.8E-10 82.5 5.0 34 25-59 105-138 (598)
200 1m6i_A Programmed cell death p 97.9 8.9E-06 3E-10 80.1 4.8 54 227-286 227-280 (493)
201 1ebd_A E3BD, dihydrolipoamide 97.9 0.0001 3.4E-09 71.8 12.2 36 26-62 169-204 (455)
202 2cdu_A NADPH oxidase; flavoenz 97.9 1.2E-05 4.1E-10 78.3 5.4 53 227-285 192-244 (452)
203 1kdg_A CDH, cellobiose dehydro 97.8 1.1E-05 3.7E-10 80.7 5.0 37 25-62 5-41 (546)
204 3sx6_A Sulfide-quinone reducta 97.8 1.2E-05 4.1E-10 77.9 4.8 36 26-62 3-41 (437)
205 1nhp_A NADH peroxidase; oxidor 97.8 0.00014 4.6E-09 70.7 12.3 36 26-62 148-183 (447)
206 3t37_A Probable dehydrogenase; 97.8 8.2E-06 2.8E-10 81.2 3.7 36 25-61 15-51 (526)
207 1nhp_A NADH peroxidase; oxidor 97.8 1.5E-05 5.1E-10 77.5 5.4 36 28-64 1-38 (447)
208 3cgb_A Pyridine nucleotide-dis 97.8 1.5E-05 5.3E-10 78.2 5.4 38 27-65 36-75 (480)
209 2hqm_A GR, grase, glutathione 97.8 0.00019 6.4E-09 70.4 13.0 41 245-285 239-282 (479)
210 2gqw_A Ferredoxin reductase; f 97.8 0.00025 8.5E-09 67.9 13.2 35 26-61 144-178 (408)
211 2cdu_A NADPH oxidase; flavoenz 97.8 0.00024 8.2E-09 69.0 13.0 36 27-63 149-184 (452)
212 4eqs_A Coenzyme A disulfide re 97.8 2.2E-05 7.6E-10 76.0 5.5 37 28-64 1-38 (437)
213 1ojt_A Surface protein; redox- 97.8 0.00014 4.7E-09 71.4 11.3 41 245-285 239-283 (482)
214 1v59_A Dihydrolipoamide dehydr 97.8 0.00018 6E-09 70.6 12.0 36 27-63 183-218 (478)
215 1mo9_A ORF3; nucleotide bindin 97.7 0.0002 6.9E-09 71.0 12.3 41 245-285 268-313 (523)
216 1ju2_A HydroxynitrIle lyase; f 97.7 7.6E-06 2.6E-10 81.3 1.9 37 25-63 24-60 (536)
217 1zmd_A Dihydrolipoyl dehydroge 97.7 0.00028 9.4E-09 69.1 13.0 35 27-62 178-212 (474)
218 1onf_A GR, grase, glutathione 97.7 0.00026 9E-09 69.7 12.9 36 27-63 176-211 (500)
219 1fec_A Trypanothione reductase 97.7 0.00027 9.4E-09 69.4 12.9 36 27-63 187-225 (490)
220 2wpf_A Trypanothione reductase 97.7 0.00034 1.2E-08 68.8 13.4 36 27-63 191-229 (495)
221 1lvl_A Dihydrolipoamide dehydr 97.7 0.00015 5.2E-09 70.6 10.6 35 27-62 171-205 (458)
222 2a8x_A Dihydrolipoyl dehydroge 97.7 0.00035 1.2E-08 68.1 12.8 34 27-61 171-204 (464)
223 3vrd_B FCCB subunit, flavocyto 97.7 2.5E-05 8.6E-10 74.7 4.4 41 245-285 215-255 (401)
224 4b1b_A TRXR, thioredoxin reduc 97.7 0.00045 1.5E-08 68.3 13.4 35 26-61 222-256 (542)
225 2qae_A Lipoamide, dihydrolipoy 97.7 0.00041 1.4E-08 67.7 13.0 41 245-285 229-273 (468)
226 1n4w_A CHOD, cholesterol oxida 97.7 3E-05 1E-09 76.5 4.9 39 25-64 3-41 (504)
227 3qvp_A Glucose oxidase; oxidor 97.6 1.9E-05 6.5E-10 78.8 3.0 37 24-61 16-53 (583)
228 3ic9_A Dihydrolipoamide dehydr 97.6 0.00048 1.6E-08 67.7 13.0 36 26-62 173-208 (492)
229 3q9t_A Choline dehydrogenase a 97.6 2.6E-05 9E-10 77.8 3.9 37 25-62 4-41 (577)
230 1dxl_A Dihydrolipoamide dehydr 97.6 0.00031 1.1E-08 68.6 11.5 36 26-62 176-211 (470)
231 1zk7_A HGII, reductase, mercur 97.6 0.00051 1.7E-08 67.1 12.7 40 245-285 229-268 (467)
232 1m6i_A Programmed cell death p 97.6 0.00065 2.2E-08 66.7 13.3 35 27-62 180-218 (493)
233 2bc0_A NADH oxidase; flavoprot 97.6 0.0006 2.1E-08 67.0 13.0 35 26-61 193-227 (490)
234 3lad_A Dihydrolipoamide dehydr 97.6 0.00061 2.1E-08 66.7 12.9 41 245-285 234-277 (476)
235 3hyw_A Sulfide-quinone reducta 97.6 5.2E-05 1.8E-09 73.3 5.1 35 28-62 3-38 (430)
236 3urh_A Dihydrolipoyl dehydroge 97.6 0.00056 1.9E-08 67.2 12.6 35 26-61 197-231 (491)
237 4g6h_A Rotenone-insensitive NA 97.6 4E-05 1.4E-09 75.5 4.1 39 22-61 37-75 (502)
238 1coy_A Cholesterol oxidase; ox 97.5 6.1E-05 2.1E-09 74.3 5.2 39 24-63 8-46 (507)
239 1gpe_A Protein (glucose oxidas 97.5 5.3E-05 1.8E-09 76.1 4.5 38 25-63 22-60 (587)
240 4dna_A Probable glutathione re 97.5 0.00075 2.6E-08 65.8 12.7 40 245-285 224-265 (463)
241 1xhc_A NADH oxidase /nitrite r 97.5 5.6E-05 1.9E-09 71.3 4.1 35 27-63 8-42 (367)
242 3cgb_A Pyridine nucleotide-dis 97.5 0.00062 2.1E-08 66.7 11.2 35 26-61 185-219 (480)
243 3fim_B ARYL-alcohol oxidase; A 97.5 4.4E-05 1.5E-09 76.0 2.9 36 27-63 2-38 (566)
244 3s5w_A L-ornithine 5-monooxyge 97.4 0.0014 4.9E-08 63.7 13.6 42 245-286 329-375 (463)
245 2jbv_A Choline oxidase; alcoho 97.4 8.7E-05 3E-09 73.9 4.1 37 26-63 12-49 (546)
246 3ics_A Coenzyme A-disulfide re 97.4 0.0011 3.9E-08 66.6 12.4 34 27-61 187-220 (588)
247 3dk9_A Grase, GR, glutathione 97.4 0.0016 5.5E-08 63.7 12.7 34 27-61 187-220 (478)
248 1trb_A Thioredoxin reductase; 97.3 0.002 6.7E-08 59.2 11.5 35 26-61 144-178 (320)
249 3kd9_A Coenzyme A disulfide re 97.2 0.0024 8.2E-08 61.9 11.8 35 26-61 147-181 (449)
250 3l8k_A Dihydrolipoyl dehydroge 97.2 0.0031 1.1E-07 61.4 12.6 35 26-61 171-205 (466)
251 3dgh_A TRXR-1, thioredoxin red 97.2 0.0038 1.3E-07 61.1 12.9 33 27-60 187-219 (483)
252 2zbw_A Thioredoxin reductase; 97.1 0.0036 1.2E-07 57.9 11.3 35 26-61 151-185 (335)
253 3dgz_A Thioredoxin reductase 2 97.0 0.0065 2.2E-07 59.5 12.9 34 26-60 184-217 (488)
254 2g1u_A Hypothetical protein TM 96.7 0.0022 7.5E-08 52.1 5.4 41 20-61 12-52 (155)
255 3fwz_A Inner membrane protein 96.5 0.0042 1.4E-07 49.4 6.0 38 23-61 3-40 (140)
256 3k30_A Histamine dehydrogenase 96.5 0.0052 1.8E-07 63.0 8.2 35 26-61 522-558 (690)
257 3klj_A NAD(FAD)-dependent dehy 96.5 0.0025 8.5E-08 60.4 5.1 37 27-64 146-182 (385)
258 3llv_A Exopolyphosphatase-rela 96.4 0.0038 1.3E-07 49.7 5.4 34 26-60 5-38 (141)
259 4gcm_A TRXR, thioredoxin reduc 96.4 0.0026 8.8E-08 58.2 4.6 36 27-63 145-180 (312)
260 4g6h_A Rotenone-insensitive NA 96.2 0.018 6E-07 56.5 9.9 41 245-285 285-329 (502)
261 1lss_A TRK system potassium up 96.2 0.0056 1.9E-07 48.4 5.0 33 27-60 4-36 (140)
262 2v3a_A Rubredoxin reductase; a 96.1 0.006 2E-07 57.7 5.6 38 27-65 145-182 (384)
263 3ado_A Lambda-crystallin; L-gu 96.0 0.0058 2E-07 55.7 4.9 36 24-60 3-38 (319)
264 1xhc_A NADH oxidase /nitrite r 95.9 0.0065 2.2E-07 57.1 4.8 35 28-63 144-178 (367)
265 1f0y_A HCDH, L-3-hydroxyacyl-C 95.8 0.0092 3.1E-07 54.3 5.4 40 19-60 8-47 (302)
266 3ic5_A Putative saccharopine d 95.8 0.0092 3.1E-07 45.5 4.5 33 27-60 5-38 (118)
267 1id1_A Putative potassium chan 95.8 0.014 4.7E-07 47.1 5.6 33 27-60 3-35 (153)
268 4a5l_A Thioredoxin reductase; 95.7 0.0076 2.6E-07 55.0 4.5 35 26-61 151-185 (314)
269 2hmt_A YUAA protein; RCK, KTN, 95.6 0.012 4.2E-07 46.6 4.8 33 27-60 6-38 (144)
270 3c85_A Putative glutathione-re 95.6 0.018 6.2E-07 47.9 5.8 33 27-60 39-72 (183)
271 4eqs_A Coenzyme A disulfide re 95.5 0.014 4.9E-07 56.1 5.6 61 27-107 147-207 (437)
272 1q1r_A Putidaredoxin reductase 95.4 0.016 5.5E-07 55.6 5.4 38 26-64 148-185 (431)
273 3ef6_A Toluene 1,2-dioxygenase 95.3 0.018 6.3E-07 54.8 5.6 38 26-64 142-179 (410)
274 4e12_A Diketoreductase; oxidor 95.3 0.019 6.6E-07 51.6 5.4 33 27-60 4-36 (283)
275 2dpo_A L-gulonate 3-dehydrogen 95.3 0.017 5.7E-07 52.9 4.9 34 26-60 5-38 (319)
276 3lk7_A UDP-N-acetylmuramoylala 95.2 0.017 5.8E-07 55.8 5.1 35 26-61 8-42 (451)
277 2a9f_A Putative malic enzyme ( 95.2 0.029 9.8E-07 52.1 6.3 37 24-60 185-221 (398)
278 3d1c_A Flavin-containing putat 95.1 0.019 6.6E-07 53.6 4.9 42 245-286 227-270 (369)
279 2x5o_A UDP-N-acetylmuramoylala 95.0 0.016 5.6E-07 55.7 4.1 36 27-63 5-40 (439)
280 3i83_A 2-dehydropantoate 2-red 95.0 0.023 7.8E-07 52.2 4.9 32 28-60 3-34 (320)
281 2xve_A Flavin-containing monoo 94.9 0.025 8.5E-07 54.9 5.3 37 26-63 196-232 (464)
282 3l4b_C TRKA K+ channel protien 94.9 0.023 8E-07 48.8 4.6 32 28-60 1-32 (218)
283 2q0l_A TRXR, thioredoxin reduc 94.9 0.023 8E-07 51.6 4.8 35 26-61 142-176 (311)
284 3hn2_A 2-dehydropantoate 2-red 94.8 0.023 8E-07 51.9 4.7 32 28-60 3-34 (312)
285 1vl6_A Malate oxidoreductase; 94.8 0.03 1E-06 51.9 5.3 37 24-60 189-225 (388)
286 3lxd_A FAD-dependent pyridine 94.7 0.033 1.1E-06 53.1 5.6 36 27-63 152-187 (415)
287 3ntd_A FAD-dependent pyridine 94.7 0.034 1.1E-06 55.5 5.7 36 27-63 151-186 (565)
288 3gwf_A Cyclohexanone monooxyge 94.7 0.025 8.5E-07 56.0 4.7 36 26-62 177-212 (540)
289 1fl2_A Alkyl hydroperoxide red 94.7 0.025 8.5E-07 51.4 4.4 35 27-62 144-178 (310)
290 3k6j_A Protein F01G10.3, confi 94.6 0.037 1.3E-06 53.1 5.6 35 26-61 53-87 (460)
291 4ap3_A Steroid monooxygenase; 94.6 0.031 1.1E-06 55.4 5.1 36 26-62 190-225 (549)
292 3fg2_P Putative rubredoxin red 94.6 0.033 1.1E-06 52.9 5.1 37 27-64 142-178 (404)
293 3oc4_A Oxidoreductase, pyridin 94.6 0.038 1.3E-06 53.4 5.6 37 27-64 147-183 (452)
294 3dfz_A SIRC, precorrin-2 dehyd 94.5 0.037 1.3E-06 47.5 4.9 34 26-60 30-63 (223)
295 3vtf_A UDP-glucose 6-dehydroge 94.5 0.045 1.5E-06 52.1 5.8 38 22-60 16-53 (444)
296 1zej_A HBD-9, 3-hydroxyacyl-CO 94.5 0.034 1.2E-06 50.0 4.8 33 26-60 11-43 (293)
297 1vdc_A NTR, NADPH dependent th 94.5 0.029 1E-06 51.5 4.5 36 26-62 158-193 (333)
298 1kyq_A Met8P, siroheme biosynt 94.5 0.023 7.8E-07 50.5 3.5 34 26-60 12-45 (274)
299 3g17_A Similar to 2-dehydropan 94.5 0.032 1.1E-06 50.5 4.5 33 27-60 2-34 (294)
300 2raf_A Putative dinucleotide-b 94.4 0.044 1.5E-06 46.8 5.1 37 25-62 17-53 (209)
301 2a87_A TRXR, TR, thioredoxin r 94.4 0.032 1.1E-06 51.4 4.6 36 26-62 154-189 (335)
302 3qha_A Putative oxidoreductase 94.4 0.029 9.9E-07 50.8 4.1 36 25-61 13-48 (296)
303 4dio_A NAD(P) transhydrogenase 94.4 0.044 1.5E-06 51.4 5.3 34 26-60 189-222 (405)
304 3eag_A UDP-N-acetylmuramate:L- 94.4 0.082 2.8E-06 48.5 7.1 34 27-61 4-38 (326)
305 3uox_A Otemo; baeyer-villiger 94.3 0.029 1E-06 55.5 4.3 36 26-62 184-219 (545)
306 2q7v_A Thioredoxin reductase; 94.3 0.035 1.2E-06 50.9 4.6 34 27-61 152-185 (325)
307 2vdc_G Glutamate synthase [NAD 94.3 0.05 1.7E-06 52.6 5.6 38 25-62 262-299 (456)
308 3gg2_A Sugar dehydrogenase, UD 94.3 0.041 1.4E-06 52.9 5.0 32 28-60 3-34 (450)
309 2gv8_A Monooxygenase; FMO, FAD 94.2 0.039 1.3E-06 53.2 4.9 37 26-63 211-248 (447)
310 1ks9_A KPA reductase;, 2-dehyd 94.2 0.049 1.7E-06 49.0 5.2 32 29-61 2-33 (291)
311 2ew2_A 2-dehydropantoate 2-red 94.2 0.043 1.5E-06 50.0 4.8 32 28-60 4-35 (316)
312 3doj_A AT3G25530, dehydrogenas 94.2 0.05 1.7E-06 49.6 5.2 36 25-61 19-54 (310)
313 2y0c_A BCEC, UDP-glucose dehyd 94.2 0.043 1.5E-06 53.2 5.0 34 26-60 7-40 (478)
314 3p2y_A Alanine dehydrogenase/p 94.1 0.048 1.6E-06 50.7 5.0 34 26-60 183-216 (381)
315 1bg6_A N-(1-D-carboxylethyl)-L 94.1 0.046 1.6E-06 51.0 5.0 33 27-60 4-36 (359)
316 3ghy_A Ketopantoate reductase 94.1 0.05 1.7E-06 50.2 5.1 33 27-60 3-35 (335)
317 3l6d_A Putative oxidoreductase 94.1 0.075 2.6E-06 48.3 6.2 35 25-60 7-41 (306)
318 3g0o_A 3-hydroxyisobutyrate de 94.0 0.051 1.7E-06 49.3 5.0 34 26-60 6-39 (303)
319 2vns_A Metalloreductase steap3 94.0 0.062 2.1E-06 46.0 5.2 34 26-60 27-60 (215)
320 1pzg_A LDH, lactate dehydrogen 94.0 0.072 2.5E-06 49.0 6.0 35 27-61 9-43 (331)
321 4e21_A 6-phosphogluconate dehy 94.0 0.051 1.8E-06 50.5 5.0 37 23-60 18-54 (358)
322 2ewd_A Lactate dehydrogenase,; 94.0 0.066 2.3E-06 49.0 5.6 36 26-61 3-38 (317)
323 1zcj_A Peroxisomal bifunctiona 93.9 0.054 1.8E-06 52.4 5.1 34 26-60 36-69 (463)
324 3itj_A Thioredoxin reductase 1 93.9 0.046 1.6E-06 50.2 4.5 36 26-62 172-207 (338)
325 2x8g_A Thioredoxin glutathione 93.8 0.061 2.1E-06 54.0 5.5 33 27-60 286-318 (598)
326 1xdi_A RV3303C-LPDA; reductase 93.8 0.064 2.2E-06 52.5 5.6 38 26-64 181-218 (499)
327 3cty_A Thioredoxin reductase; 93.8 0.042 1.4E-06 50.2 4.0 34 27-61 155-188 (319)
328 3k96_A Glycerol-3-phosphate de 93.8 0.058 2E-06 50.2 4.9 34 26-60 28-61 (356)
329 3hwr_A 2-dehydropantoate 2-red 93.8 0.057 2E-06 49.4 4.8 34 25-60 17-50 (318)
330 1hyu_A AHPF, alkyl hydroperoxi 93.7 0.052 1.8E-06 53.5 4.7 36 26-62 354-389 (521)
331 1z82_A Glycerol-3-phosphate de 93.7 0.063 2.2E-06 49.5 5.0 34 26-60 13-46 (335)
332 3iwa_A FAD-dependent pyridine 93.7 0.067 2.3E-06 51.9 5.4 37 26-63 158-195 (472)
333 4dll_A 2-hydroxy-3-oxopropiona 93.7 0.063 2.1E-06 49.2 4.9 35 25-60 29-63 (320)
334 3ego_A Probable 2-dehydropanto 93.7 0.062 2.1E-06 48.9 4.8 32 27-60 2-33 (307)
335 3dtt_A NADP oxidoreductase; st 93.6 0.075 2.6E-06 46.5 5.1 35 25-60 17-51 (245)
336 3f8d_A Thioredoxin reductase ( 93.6 0.072 2.5E-06 48.5 5.2 36 26-62 153-188 (323)
337 3qfa_A Thioredoxin reductase 1 93.6 0.087 3E-06 51.9 6.1 33 27-60 210-242 (519)
338 3ab1_A Ferredoxin--NADP reduct 93.5 0.053 1.8E-06 50.4 4.2 37 26-63 162-198 (360)
339 4a7p_A UDP-glucose dehydrogena 93.5 0.075 2.6E-06 50.9 5.2 35 26-61 7-41 (446)
340 2cul_A Glucose-inhibited divis 93.5 0.12 4.1E-06 44.8 6.1 55 227-287 69-124 (232)
341 1jw9_B Molybdopterin biosynthe 93.4 0.082 2.8E-06 46.4 4.9 34 27-60 31-64 (249)
342 1lld_A L-lactate dehydrogenase 93.3 0.074 2.5E-06 48.7 4.7 35 26-60 6-41 (319)
343 2h78_A Hibadh, 3-hydroxyisobut 93.3 0.076 2.6E-06 48.1 4.7 33 27-60 3-35 (302)
344 3pdu_A 3-hydroxyisobutyrate de 93.2 0.082 2.8E-06 47.5 4.8 33 28-61 2-34 (287)
345 3mog_A Probable 3-hydroxybutyr 93.2 0.092 3.1E-06 50.9 5.3 34 27-61 5-38 (483)
346 1cjc_A Protein (adrenodoxin re 93.1 0.072 2.5E-06 51.5 4.5 36 26-61 144-199 (460)
347 3pef_A 6-phosphogluconate dehy 93.1 0.096 3.3E-06 47.1 5.0 33 28-61 2-34 (287)
348 4ffl_A PYLC; amino acid, biosy 93.1 0.099 3.4E-06 48.8 5.3 34 27-61 1-34 (363)
349 2q3e_A UDP-glucose 6-dehydroge 93.0 0.086 2.9E-06 51.1 4.9 33 27-60 5-39 (467)
350 3l9w_A Glutathione-regulated p 93.0 0.1 3.5E-06 49.5 5.4 35 26-61 3-37 (413)
351 3pid_A UDP-glucose 6-dehydroge 93.0 0.08 2.7E-06 50.3 4.5 34 25-60 34-67 (432)
352 3o0h_A Glutathione reductase; 93.0 0.096 3.3E-06 51.0 5.3 37 26-63 190-226 (484)
353 1t2d_A LDH-P, L-lactate dehydr 93.0 0.12 4.1E-06 47.3 5.5 35 26-60 3-37 (322)
354 3r9u_A Thioredoxin reductase; 93.0 0.087 3E-06 47.7 4.7 35 27-62 147-181 (315)
355 3tl2_A Malate dehydrogenase; c 92.9 0.12 4.2E-06 46.9 5.5 35 26-60 7-41 (315)
356 2o3j_A UDP-glucose 6-dehydroge 92.9 0.099 3.4E-06 50.8 5.1 33 27-60 9-43 (481)
357 1mv8_A GMD, GDP-mannose 6-dehy 92.9 0.081 2.8E-06 50.8 4.5 31 29-60 2-32 (436)
358 1ldn_A L-lactate dehydrogenase 92.8 0.14 4.7E-06 46.8 5.6 37 24-60 3-40 (316)
359 1txg_A Glycerol-3-phosphate de 92.7 0.092 3.1E-06 48.3 4.5 30 29-59 2-31 (335)
360 2uyy_A N-PAC protein; long-cha 92.7 0.15 5.1E-06 46.5 5.9 33 27-60 30-62 (316)
361 2hjr_A Malate dehydrogenase; m 92.7 0.13 4.5E-06 47.2 5.4 36 26-61 13-48 (328)
362 1x13_A NAD(P) transhydrogenase 92.7 0.11 3.9E-06 49.0 5.1 34 26-60 171-204 (401)
363 3oj0_A Glutr, glutamyl-tRNA re 92.6 0.048 1.6E-06 43.3 2.1 33 27-60 21-53 (144)
364 3cky_A 2-hydroxymethyl glutara 92.6 0.11 3.7E-06 47.0 4.7 34 26-60 3-36 (301)
365 1pjc_A Protein (L-alanine dehy 92.5 0.13 4.5E-06 47.9 5.3 33 27-60 167-199 (361)
366 2wtb_A MFP2, fatty acid multif 92.5 0.12 4.1E-06 52.9 5.3 34 26-60 311-344 (725)
367 1guz_A Malate dehydrogenase; o 92.5 0.13 4.3E-06 46.9 4.9 32 29-61 2-35 (310)
368 1evy_A Glycerol-3-phosphate de 92.4 0.081 2.8E-06 49.4 3.7 31 29-60 17-47 (366)
369 1l7d_A Nicotinamide nucleotide 92.4 0.13 4.6E-06 48.3 5.2 34 26-60 171-204 (384)
370 4g65_A TRK system potassium up 92.4 0.054 1.8E-06 52.3 2.5 33 27-60 3-35 (461)
371 3qsg_A NAD-binding phosphogluc 92.4 0.12 4.2E-06 47.0 4.8 36 25-60 22-57 (312)
372 3dfu_A Uncharacterized protein 92.4 0.047 1.6E-06 47.1 1.8 34 26-60 5-38 (232)
373 1nyt_A Shikimate 5-dehydrogena 92.4 0.15 5E-06 45.5 5.1 34 26-60 118-151 (271)
374 2izz_A Pyrroline-5-carboxylate 92.3 0.13 4.6E-06 47.0 5.0 33 27-60 22-58 (322)
375 3ktd_A Prephenate dehydrogenas 92.3 0.16 5.5E-06 46.8 5.4 35 25-60 6-40 (341)
376 3g79_A NDP-N-acetyl-D-galactos 92.2 0.13 4.5E-06 49.6 4.9 36 26-62 17-54 (478)
377 3lzw_A Ferredoxin--NADP reduct 92.2 0.1 3.5E-06 47.7 4.1 35 27-62 154-188 (332)
378 1hyh_A L-hicdh, L-2-hydroxyiso 92.2 0.14 4.7E-06 46.6 4.9 32 28-60 2-35 (309)
379 3phh_A Shikimate dehydrogenase 92.2 0.17 5.7E-06 44.8 5.2 33 27-60 118-150 (269)
380 3h8v_A Ubiquitin-like modifier 92.2 0.13 4.5E-06 46.1 4.5 35 26-60 35-69 (292)
381 4ezb_A Uncharacterized conserv 92.2 0.12 4E-06 47.2 4.4 33 27-60 24-57 (317)
382 4huj_A Uncharacterized protein 92.1 0.081 2.8E-06 45.5 3.1 33 27-60 23-56 (220)
383 1y6j_A L-lactate dehydrogenase 92.1 0.17 5.7E-06 46.2 5.3 35 26-60 6-41 (318)
384 1yj8_A Glycerol-3-phosphate de 92.1 0.12 4.2E-06 48.4 4.5 33 28-61 22-61 (375)
385 2pv7_A T-protein [includes: ch 92.0 0.16 5.4E-06 45.9 5.0 34 27-61 21-55 (298)
386 3d0o_A L-LDH 1, L-lactate dehy 92.0 0.16 5.6E-06 46.2 5.2 35 26-60 5-40 (317)
387 3gvi_A Malate dehydrogenase; N 92.0 0.18 6.2E-06 46.0 5.4 36 26-61 6-41 (324)
388 1zud_1 Adenylyltransferase THI 92.0 0.15 5.3E-06 44.7 4.8 35 26-60 27-61 (251)
389 2qrj_A Saccharopine dehydrogen 92.0 0.32 1.1E-05 45.3 7.0 42 25-66 212-257 (394)
390 3rui_A Ubiquitin-like modifier 91.9 0.18 6E-06 46.2 5.1 35 26-60 33-67 (340)
391 1dlj_A UDP-glucose dehydrogena 91.9 0.11 3.8E-06 49.2 3.9 30 29-60 2-31 (402)
392 2eez_A Alanine dehydrogenase; 91.9 0.18 6.1E-06 47.2 5.3 34 26-60 165-198 (369)
393 2qyt_A 2-dehydropantoate 2-red 91.8 0.11 3.8E-06 47.3 3.9 31 28-59 9-45 (317)
394 1jay_A Coenzyme F420H2:NADP+ o 91.8 0.16 5.3E-06 43.3 4.5 31 29-60 2-33 (212)
395 4gwg_A 6-phosphogluconate dehy 91.7 0.18 6.1E-06 48.8 5.2 35 26-61 3-37 (484)
396 3c24_A Putative oxidoreductase 91.7 0.2 6.7E-06 45.0 5.2 33 27-60 11-44 (286)
397 1pjq_A CYSG, siroheme synthase 91.6 0.16 5.4E-06 49.0 4.8 34 26-60 11-44 (457)
398 1wdk_A Fatty oxidation complex 91.6 0.17 5.7E-06 51.8 5.1 34 26-60 313-346 (715)
399 1p77_A Shikimate 5-dehydrogena 91.6 0.15 5.1E-06 45.4 4.2 34 26-60 118-151 (272)
400 1vpd_A Tartronate semialdehyde 91.5 0.16 5.5E-06 45.8 4.5 32 28-60 6-37 (299)
401 2rcy_A Pyrroline carboxylate r 91.5 0.22 7.4E-06 43.9 5.3 35 27-62 4-42 (262)
402 2egg_A AROE, shikimate 5-dehyd 91.5 0.18 6.2E-06 45.5 4.7 35 26-60 140-174 (297)
403 1yqg_A Pyrroline-5-carboxylate 91.4 0.19 6.4E-06 44.4 4.8 31 29-60 2-33 (263)
404 1lqt_A FPRA; NADP+ derivative, 91.4 0.15 5.1E-06 49.2 4.4 36 26-61 146-201 (456)
405 1x0v_A GPD-C, GPDH-C, glycerol 91.4 0.11 3.9E-06 48.1 3.4 34 28-62 9-49 (354)
406 2v6b_A L-LDH, L-lactate dehydr 91.4 0.18 6.1E-06 45.7 4.6 32 29-60 2-34 (304)
407 3u62_A Shikimate dehydrogenase 91.3 0.26 8.8E-06 43.3 5.4 34 26-60 108-141 (253)
408 2p4q_A 6-phosphogluconate dehy 91.3 0.22 7.6E-06 48.4 5.5 35 26-61 9-43 (497)
409 3ggo_A Prephenate dehydrogenas 91.3 0.22 7.6E-06 45.3 5.2 34 27-60 33-67 (314)
410 2vhw_A Alanine dehydrogenase; 91.3 0.22 7.6E-06 46.6 5.3 34 26-60 167-200 (377)
411 2f1k_A Prephenate dehydrogenas 91.3 0.2 6.9E-06 44.7 4.8 31 29-60 2-32 (279)
412 2zyd_A 6-phosphogluconate dehy 91.2 0.16 5.6E-06 49.2 4.4 34 26-60 14-47 (480)
413 1o94_A Tmadh, trimethylamine d 91.2 0.19 6.4E-06 51.7 5.1 35 26-61 527-563 (729)
414 3fbt_A Chorismate mutase and s 91.0 0.24 8.3E-06 44.1 5.0 36 25-60 120-155 (282)
415 3pqe_A L-LDH, L-lactate dehydr 91.0 0.27 9.1E-06 44.9 5.4 36 25-60 3-39 (326)
416 2gf2_A Hibadh, 3-hydroxyisobut 91.0 0.22 7.6E-06 44.8 4.9 31 29-60 2-32 (296)
417 1ur5_A Malate dehydrogenase; o 90.9 0.26 8.9E-06 44.7 5.2 33 28-60 3-35 (309)
418 4aj2_A L-lactate dehydrogenase 90.9 0.26 8.9E-06 45.1 5.2 41 20-60 12-53 (331)
419 3jyo_A Quinate/shikimate dehyd 90.9 0.27 9.4E-06 43.9 5.2 36 25-60 125-160 (283)
420 4gbj_A 6-phosphogluconate dehy 90.8 0.18 6.2E-06 45.5 4.1 33 28-61 6-38 (297)
421 1w4x_A Phenylacetone monooxyge 90.8 0.22 7.6E-06 49.2 5.1 35 26-61 185-219 (542)
422 3pwz_A Shikimate dehydrogenase 90.8 0.28 9.7E-06 43.5 5.2 36 25-60 118-153 (272)
423 2gag_A Heterotetrameric sarcos 90.8 0.12 4.3E-06 54.8 3.4 36 27-63 284-319 (965)
424 2hk9_A Shikimate dehydrogenase 90.8 0.23 8E-06 44.2 4.7 33 27-60 129-161 (275)
425 3h5n_A MCCB protein; ubiquitin 90.7 0.27 9.1E-06 45.6 5.2 34 27-60 118-151 (353)
426 3don_A Shikimate dehydrogenase 90.7 0.17 5.9E-06 45.0 3.7 35 26-60 116-150 (277)
427 3tnl_A Shikimate dehydrogenase 90.7 0.3 1E-05 44.3 5.4 35 26-60 153-187 (315)
428 3ldh_A Lactate dehydrogenase; 90.7 0.39 1.3E-05 43.8 6.1 35 26-60 20-55 (330)
429 3ius_A Uncharacterized conserv 90.7 0.21 7.3E-06 44.5 4.4 34 27-61 5-38 (286)
430 3gpi_A NAD-dependent epimerase 90.6 0.33 1.1E-05 43.3 5.6 34 27-61 3-36 (286)
431 2rir_A Dipicolinate synthase, 90.6 0.29 1E-05 44.2 5.2 35 25-60 155-189 (300)
432 1npy_A Hypothetical shikimate 90.5 0.29 1E-05 43.4 5.1 34 27-60 119-152 (271)
433 2dvm_A Malic enzyme, 439AA lon 90.5 0.27 9.2E-06 46.7 5.0 33 26-58 185-219 (439)
434 2cvz_A Dehydrogenase, 3-hydrox 90.4 0.22 7.5E-06 44.6 4.3 31 28-60 2-32 (289)
435 3t4e_A Quinate/shikimate dehyd 90.4 0.34 1.2E-05 43.9 5.4 36 25-60 146-181 (312)
436 3d4o_A Dipicolinate synthase s 90.4 0.32 1.1E-05 43.8 5.3 35 25-60 153-187 (293)
437 2pgd_A 6-phosphogluconate dehy 90.4 0.27 9.2E-06 47.8 5.1 32 28-60 3-34 (482)
438 3c7a_A Octopine dehydrogenase; 90.4 0.14 4.7E-06 48.6 3.0 30 28-58 3-33 (404)
439 1gte_A Dihydropyrimidine dehyd 90.3 0.23 8E-06 53.1 5.0 35 27-61 332-366 (1025)
440 3d1l_A Putative NADP oxidoredu 90.3 0.25 8.7E-06 43.6 4.5 33 27-60 10-43 (266)
441 3h8l_A NADH oxidase; membrane 90.2 0.33 1.1E-05 46.0 5.5 50 227-286 219-268 (409)
442 3ojo_A CAP5O; rossmann fold, c 90.0 0.25 8.4E-06 47.0 4.4 32 28-60 12-43 (431)
443 3o8q_A Shikimate 5-dehydrogena 90.0 0.32 1.1E-05 43.4 4.9 35 26-60 125-159 (281)
444 2ahr_A Putative pyrroline carb 89.9 0.25 8.4E-06 43.5 4.1 33 27-60 3-35 (259)
445 1pgj_A 6PGDH, 6-PGDH, 6-phosph 89.8 0.29 9.9E-06 47.4 4.8 32 28-60 2-33 (478)
446 3zwc_A Peroxisomal bifunctiona 89.8 0.32 1.1E-05 49.7 5.2 35 25-60 314-348 (742)
447 1np3_A Ketol-acid reductoisome 89.8 0.36 1.2E-05 44.4 5.2 33 27-60 16-48 (338)
448 1a5z_A L-lactate dehydrogenase 89.7 0.29 9.9E-06 44.7 4.5 32 29-60 2-34 (319)
449 1yb4_A Tartronic semialdehyde 89.7 0.2 6.9E-06 45.0 3.4 30 28-58 4-33 (295)
450 1ez4_A Lactate dehydrogenase; 89.7 0.33 1.1E-05 44.2 4.9 36 25-60 3-39 (318)
451 3vku_A L-LDH, L-lactate dehydr 89.7 0.39 1.3E-05 43.8 5.3 36 25-60 7-43 (326)
452 3tum_A Shikimate dehydrogenase 89.7 0.45 1.5E-05 42.1 5.5 36 25-60 123-158 (269)
453 3dhn_A NAD-dependent epimerase 89.7 0.26 8.9E-06 42.2 4.0 33 27-60 4-37 (227)
454 3fbs_A Oxidoreductase; structu 89.7 0.22 7.4E-06 44.6 3.6 34 26-61 140-173 (297)
455 3e8x_A Putative NAD-dependent 89.5 0.41 1.4E-05 41.3 5.1 34 26-60 20-54 (236)
456 3p7m_A Malate dehydrogenase; p 89.5 0.45 1.5E-05 43.3 5.5 35 27-61 5-39 (321)
457 3fi9_A Malate dehydrogenase; s 89.4 0.38 1.3E-05 44.2 5.0 34 27-60 8-43 (343)
458 3vps_A TUNA, NAD-dependent epi 89.4 0.38 1.3E-05 43.6 5.1 35 26-61 6-41 (321)
459 1y1p_A ARII, aldehyde reductas 89.3 0.58 2E-05 42.8 6.3 39 21-60 5-44 (342)
460 3gt0_A Pyrroline-5-carboxylate 89.3 0.44 1.5E-05 41.6 5.2 33 28-60 3-38 (247)
461 3ew7_A LMO0794 protein; Q8Y8U8 89.3 0.43 1.5E-05 40.5 5.1 31 29-60 2-33 (221)
462 2d5c_A AROE, shikimate 5-dehyd 89.3 0.43 1.5E-05 42.1 5.2 31 29-60 118-148 (263)
463 4gsl_A Ubiquitin-like modifier 89.2 0.38 1.3E-05 47.4 5.1 35 26-60 325-359 (615)
464 3ond_A Adenosylhomocysteinase; 89.1 0.41 1.4E-05 46.0 5.1 34 26-60 264-297 (488)
465 1y8q_A Ubiquitin-like 1 activa 89.1 0.41 1.4E-05 44.2 5.0 35 26-60 35-69 (346)
466 2iz1_A 6-phosphogluconate dehy 89.1 0.41 1.4E-05 46.4 5.2 33 27-60 5-37 (474)
467 3vh1_A Ubiquitin-like modifier 89.1 0.34 1.2E-05 47.7 4.6 35 26-60 326-360 (598)
468 1i36_A Conserved hypothetical 89.0 0.31 1.1E-05 43.0 4.1 30 29-59 2-31 (264)
469 2i6t_A Ubiquitin-conjugating e 89.0 0.43 1.5E-05 43.1 5.0 36 26-61 13-49 (303)
470 3vrd_B FCCB subunit, flavocyto 88.9 0.24 8.3E-06 46.7 3.4 37 27-63 2-39 (401)
471 1pqw_A Polyketide synthase; ro 88.9 0.45 1.6E-05 39.8 4.8 36 24-60 36-72 (198)
472 3h2s_A Putative NADH-flavin re 88.8 0.47 1.6E-05 40.4 5.0 31 29-60 2-33 (224)
473 3b1f_A Putative prephenate deh 88.7 0.45 1.5E-05 42.6 5.0 33 27-60 6-40 (290)
474 1oju_A MDH, malate dehydrogena 88.7 0.45 1.5E-05 42.7 4.8 33 28-60 1-34 (294)
475 3nv9_A Malic enzyme; rossmann 88.6 0.36 1.2E-05 45.5 4.2 37 25-61 217-255 (487)
476 2x0j_A Malate dehydrogenase; o 88.6 0.43 1.5E-05 42.8 4.7 33 28-60 1-34 (294)
477 3obb_A Probable 3-hydroxyisobu 88.6 0.43 1.5E-05 43.1 4.7 33 27-60 3-35 (300)
478 3nep_X Malate dehydrogenase; h 88.6 0.48 1.7E-05 43.0 5.0 34 28-61 1-35 (314)
479 1tt5_B Ubiquitin-activating en 88.6 0.51 1.7E-05 44.9 5.4 35 26-60 39-73 (434)
480 4a9w_A Monooxygenase; baeyer-v 88.5 0.34 1.2E-05 44.5 4.2 33 26-60 162-194 (357)
481 1edz_A 5,10-methylenetetrahydr 88.5 0.38 1.3E-05 43.5 4.2 35 25-60 175-210 (320)
482 2d4a_B Malate dehydrogenase; a 88.5 0.5 1.7E-05 42.8 5.1 32 29-60 1-32 (308)
483 2zqz_A L-LDH, L-lactate dehydr 88.4 0.53 1.8E-05 43.0 5.3 36 25-60 7-43 (326)
484 4hv4_A UDP-N-acetylmuramate--L 88.4 0.34 1.2E-05 47.2 4.1 36 25-61 20-56 (494)
485 1p3d_A UDP-N-acetylmuramate--a 88.2 0.49 1.7E-05 45.8 5.1 36 25-61 16-52 (475)
486 1hdo_A Biliverdin IX beta redu 88.1 0.66 2.2E-05 38.7 5.4 32 28-60 4-36 (206)
487 3orq_A N5-carboxyaminoimidazol 88.1 0.84 2.9E-05 42.7 6.6 36 25-61 10-45 (377)
488 2g5c_A Prephenate dehydrogenas 88.0 0.48 1.6E-05 42.2 4.7 33 28-60 2-35 (281)
489 1gpj_A Glutamyl-tRNA reductase 87.9 0.53 1.8E-05 44.5 5.1 35 26-60 166-200 (404)
490 1leh_A Leucine dehydrogenase; 87.9 0.56 1.9E-05 43.5 5.1 35 25-60 171-205 (364)
491 2r6j_A Eugenol synthase 1; phe 87.9 0.62 2.1E-05 42.2 5.4 34 27-61 11-45 (318)
492 1mld_A Malate dehydrogenase; o 87.8 0.43 1.5E-05 43.4 4.2 32 29-61 2-36 (314)
493 2dbq_A Glyoxylate reductase; D 87.7 0.66 2.3E-05 42.5 5.4 36 25-61 148-183 (334)
494 3gvp_A Adenosylhomocysteinase 87.6 0.61 2.1E-05 44.0 5.1 35 25-60 218-252 (435)
495 3ce6_A Adenosylhomocysteinase; 87.5 0.64 2.2E-05 44.9 5.4 35 25-60 272-306 (494)
496 2yjz_A Metalloreductase steap4 87.4 0.11 3.7E-06 43.9 0.0 35 26-61 18-52 (201)
497 3tri_A Pyrroline-5-carboxylate 87.4 0.68 2.3E-05 41.3 5.3 34 27-60 3-38 (280)
498 4b4o_A Epimerase family protei 87.4 0.73 2.5E-05 41.3 5.5 33 28-61 1-34 (298)
499 1smk_A Malate dehydrogenase, g 87.4 0.42 1.4E-05 43.7 3.9 35 26-61 7-44 (326)
500 4gx0_A TRKA domain protein; me 87.4 0.64 2.2E-05 46.2 5.5 34 28-62 349-382 (565)
No 1
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Probab=100.00 E-value=3.2e-47 Score=376.82 Aligned_cols=421 Identities=53% Similarity=0.936 Sum_probs=313.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEEceeCCceeeecceeccCC-CCCCCHHHHHHHH-cC
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNIGGHTIELGANWVNSG-GPKSSPSLQIAKK-IK 102 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~-~~~~~~~~~l~~~-lg 102 (448)
++.+||+|||||++||++|+.|++.|..+|+|+|+++++||++.+....|..+|.|++|++.. +...+++++++++ +|
T Consensus 2 ~~~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~~~gg~~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~lg 81 (472)
T 1b37_A 2 TVGPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGINVELGANWVEGVNGGKMNPIWPIVNSTLK 81 (472)
T ss_dssp ---CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTSCEEEETTEEEESSCCEEEEESSSSCCTHHHHHHTTSC
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCCCCCCceeecccCCcEEeeCCeEEeccCCCCCCHHHHHHHhhcC
Confidence 356899999999999999999999997249999999999999999999999999999999842 1256789999999 99
Q ss_pred CceeecccccccceEEecCCccccHHHHHHHHHHHHHhHHHHHHHhhhccCCCCCCCcccHHHHHHhhcCC---CCChHH
Q 013178 103 LKTFYSDYANLTSNIYKQDGGLYQKHVVESAVRIAKTRDAFCTNLSKMLSSETTRDDDTSILGSQRLLKEV---PMTPLE 179 (448)
Q Consensus 103 l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 179 (448)
+......+......+|..+|+.++.......+........+.+.+...+... ..++++.....++.+.. .....+
T Consensus 82 l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~~~~~~l~~~~~~~~~~~~~ 159 (472)
T 1b37_A 82 LRNFRSDFDYLAQNVYKEDGGVYDEDYVQKRIELADSVEEMGEKLSATLHAS--GRDDMSILAMQRLNEHQPNGPATPVD 159 (472)
T ss_dssp CCEEECCCTTGGGCEECSSSSBCCHHHHHHHHHHHHHHHHHHHHHHHTSCTT--CTTCCBHHHHHHHHHTSSSSCCSHHH
T ss_pred CceeeccCccccceeEcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccc--cchhhhHHHHHHHhhhcccccccHHH
Confidence 9876654444434566667877765544433333333334444444333322 22566665544554433 223445
Q ss_pred HHHHHHhhccccCCCcccccccccCCCcccccCCCCeeeeeCCCchHHHHHHHHHhhhcc--cccccCCCceecCceeEE
Q 013178 180 MAIDYFFNDYEDAEPPRITSLKTTYPRNQLVDFGEDSYFVADPRGFESVVHSVAKQFLSH--RHQVIRDPRLKLNKVVRN 257 (448)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~l~~~--~~~~~~g~~i~~~~~V~~ 257 (448)
.+.+.+.....++.+.+..|+........+..++....+...++|++.++++|++.+.+. ..+.+.|++|++|++|++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~~~~~~~~i~~~~i~~~~~V~~ 239 (472)
T 1b37_A 160 MVVDYYKFDYEFAEPPRVTSLQNTVPLATFSDFGDDVYFVADQRGYEAVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVRE 239 (472)
T ss_dssp HHHHHHHTHHHHSSCGGGBBSTTTSSCHHHHHHCSEEEEECCTTCTTHHHHHHHHTTSCBCTTTCCBCCTTEESSCCEEE
T ss_pred HHHHHHHHhhhhcccccccchhhccccccccccCCceeeeecCCcHHHHHHHHHHhccccccccccccccEEEcCCEEEE
Confidence 555554433334555555565444332222233444555556899999999999987541 001012678999999999
Q ss_pred EEecCCcEEEEeCCCcEEEeCEEEEeechhhccCCCccccCCCCHHHHHHHhhcCCcceeEEEEEcCCCCCCCCCCcceE
Q 013178 258 ISYSKDKVTVKTEDGSVYQANYAIVSVSIGVLQSDFIEFTPNLPLWKKLAINNFNMAIYTKIFMKFPYKFWPTGPGTEFF 337 (448)
Q Consensus 258 I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~p~l~~~~~~~~~~~~~~~~~~v~l~~~~~~w~~~~~~~~~ 337 (448)
|+.++++|.|++.+|++++||+||+|+|+..++++++.|.|+||+.+.++++++.+.++.|+++.|+++||+++....++
T Consensus 240 i~~~~~~v~v~~~~g~~~~ad~vI~a~~~~~l~~~~~~~~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~w~~~~~~~~~ 319 (472)
T 1b37_A 240 IKYSPGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFDMAVYTKIFLKFPRKFWPEGKGREFF 319 (472)
T ss_dssp EEECSSCEEEEETTSCEEEESEEEECSCHHHHHTTSSEEESCCCHHHHHHHHHSEEECEEEEEEECSSCCSCCSTTCSEE
T ss_pred EEEcCCcEEEEECCCCEEEcCEEEEecCHHHhccCCeeECCCCCHHHHHHHHhcCCcceeEEEEECCCcCCCCCCCcceE
Confidence 99999899999999989999999999999999886677899999999999999999999999999999999875444566
Q ss_pred EEecccCCcccccccccccCCCCcEEEEEecchhhhhhhcCChHHHHHHHHHHHHHHHh-CCCCCCCceEeeccCCCCCC
Q 013178 338 IYAHERRGYFPIWQHLENEMPGSNILFVTVTDEESRRVERQSDEKTKAEIMNNVLRKLF-GNKIPEPQSIFVPRWWSNRF 416 (448)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~e~~~~~~~~~L~~~~-g~~~~~~~~~~~~~W~~~~~ 416 (448)
++.+.+..+.++|...+...++..+|++++.++.++.|..++++++.+.++ ++|+++| |...+++.+..+++|..+||
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~a~~~~~~~~~e~~~~~l-~~L~~~~Pg~~~~~~~~~~~~~W~~~~~ 398 (472)
T 1b37_A 320 LYASSRRGYYGVWQEFEKQYPDANVLLVTVTDEESRRIEQQSDEQTKAEIM-QVLRKMFPGKDVPDATDILVPRWWSDRF 398 (472)
T ss_dssp EECCSSTTSSCEEEECTTTSTTCCEEEEEEEHHHHHHHHTSCHHHHHHHHH-HHHHHHCTTSCCCCCSEEECCCTTTCTT
T ss_pred EecccCCccceeeecccCCCCCCCEEEEEechHHHHHHHhCCHHHHHHHHH-HHHHHHcCCCCCCCCceEEecccCCCCC
Confidence 665555556666754333345667888888777777888899999999999 9999999 55566788888999999999
Q ss_pred CCcccCCCCCCCCHHHHHHHhcccCceEEccC
Q 013178 417 FNGSYSNWPNGFTQQSYKELKVSICKLHVGLT 448 (448)
Q Consensus 417 ~~g~~~~~~~g~~~~~~~~~~~p~~~i~fAG~ 448 (448)
++|+|+.++||+....++.+++|.+||||||+
T Consensus 399 ~~G~~~~~~~g~~~~~~~~l~~p~~~l~fAG~ 430 (472)
T 1b37_A 399 YKGTFSNWPVGVNRYEYDQLRAPVGRVYFTGE 430 (472)
T ss_dssp TSSSEEECBTTCCHHHHHHHHCCBTTEEECSG
T ss_pred CCcccCCCCCCCChhHHHHHhccCCcEEEeec
Confidence 99999999999987678999999999999995
No 2
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...
Probab=100.00 E-value=1.6e-43 Score=354.57 Aligned_cols=396 Identities=19% Similarity=0.268 Sum_probs=273.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEEceeC-CceeeecceeccCCCCCCCHHHHHHHHcCCc
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNIG-GHTIELGANWVNSGGPKSSPSLQIAKKIKLK 104 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~~~~-g~~~d~G~~~~~~~~~~~~~~~~l~~~lgl~ 104 (448)
+++||+|||||++||+||+.|+++|+ +|+|||+++++|||+.+.+.+ |+.+|.|+++++. .++++.++++++|++
T Consensus 3 ~~~~vvIIGaG~aGL~aA~~L~~~G~-~V~vlE~~~~~GGr~~t~~~~~g~~~d~G~~~~~~---~~~~~~~l~~~lgl~ 78 (520)
T 1s3e_A 3 NKCDVVVVGGGISGMAAAKLLHDSGL-NVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGP---TQNRILRLAKELGLE 78 (520)
T ss_dssp CBCSEEEECCBHHHHHHHHHHHHTTC-CEEEECSSSSSBTTCCEECCTTTSCEESSCCEECT---TCHHHHHHHHHTTCC
T ss_pred CCceEEEECCCHHHHHHHHHHHHCCC-CEEEEeCCCCCCCceeecccCCCcccccCceEecC---CcHHHHHHHHHcCCc
Confidence 46899999999999999999999999 899999999999999998885 9999999999988 678899999999998
Q ss_pred eeecccccccceEEecCCcccc----------HHHHHHHHHHHHHhHHHHHHHhhhccCCCCC-------CCcccHHHHH
Q 013178 105 TFYSDYANLTSNIYKQDGGLYQ----------KHVVESAVRIAKTRDAFCTNLSKMLSSETTR-------DDDTSILGSQ 167 (448)
Q Consensus 105 ~~~~~~~~~~~~~~~~~g~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 167 (448)
........ ..++..+|+.+. ......... +......+...+...... ..+.++.++.
T Consensus 79 ~~~~~~~~--~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l 152 (520)
T 1s3e_A 79 TYKVNEVE--RLIHHVKGKSYPFRGPFPPVWNPITYLDHNN----FWRTMDDMGREIPSDAPWKAPLAEEWDNMTMKELL 152 (520)
T ss_dssp EEECCCSS--EEEEEETTEEEEECSSSCCCCSHHHHHHHHH----HHHHHHHHHTTSCTTCGGGSTTHHHHHTSBHHHHH
T ss_pred ceecccCC--ceEEEECCEEEEecCCCCCCCCHHHHHHHHH----HHHHHHHHHhhcCcCCCccccchhhhhccCHHHHH
Confidence 75543222 122222443221 001111111 111122222221111000 0123333332
Q ss_pred HhhcCCCCChHHHHHHHHhhccccCCCcccccccccCCCcc-------cccCCCCeeeeeCCCchHHHHHHHHHhhhccc
Q 013178 168 RLLKEVPMTPLEMAIDYFFNDYEDAEPPRITSLKTTYPRNQ-------LVDFGEDSYFVADPRGFESVVHSVAKQFLSHR 240 (448)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~-------~~~~~~~~~~~~~~~G~~~l~~~l~~~l~~~~ 240 (448)
+-. ......+.+...+.. ..++.+++..|+...+.... ............+.+|++.++++|++.+
T Consensus 153 ~~~--~~~~~~~~~~~~~~~-~~~g~~~~~~s~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l---- 225 (520)
T 1s3e_A 153 DKL--CWTESAKQLATLFVN-LCVTAETHEVSALWFLWYVKQCGGTTRIISTTNGGQERKFVGGSGQVSERIMDLL---- 225 (520)
T ss_dssp HHH--CSSHHHHHHHHHHHH-HHHSSCTTTSBHHHHHHHHHTTTCHHHHHCSTTSTTSEEETTCTHHHHHHHHHHH----
T ss_pred Hhh--CCCHHHHHHHHHHHh-hhcCCChHHhHHHHHHHHHhhcCchhhhcccCCCcceEEEeCCHHHHHHHHHHHc----
Confidence 211 111122222222211 12344555555432211000 0000011122345899999999999985
Q ss_pred ccccCCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeechhhccCCCccccCCCCHHHHHHHhhcCCcceeEEE
Q 013178 241 HQVIRDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSIGVLQSDFIEFTPNLPLWKKLAINNFNMAIYTKIF 320 (448)
Q Consensus 241 ~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~p~l~~~~~~~~~~~~~~~~~~v~ 320 (448)
|++|++|++|++|+.++++|.|.+.+|++++||+||+|+|+..+.+ +.|.|+||+.+.+++++++++++.|++
T Consensus 226 -----g~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~--l~~~p~lp~~~~~~i~~~~~~~~~kv~ 298 (520)
T 1s3e_A 226 -----GDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTLGMK--IHFNPPLPMMRNQMITRVPLGSVIKCI 298 (520)
T ss_dssp -----GGGEESSCCEEEEECSSSSEEEEETTSCEEEESEEEECSCGGGGGG--SEEESCCCHHHHHHTTSCCBCCEEEEE
T ss_pred -----CCcEEcCCeeEEEEECCCeEEEEECCCeEEEeCEEEECCCHHHHcc--eeeCCCCCHHHHHHHHhCCCcceEEEE
Confidence 6789999999999998888999999998999999999999999987 568899999999999999999999999
Q ss_pred EEcCCCCCCCCCCcceEEEecccCCcccccccccccCCC-CcEEEEEecchhhhhhhcCChHHHHHHHHHHHHHHHhCCC
Q 013178 321 MKFPYKFWPTGPGTEFFIYAHERRGYFPIWQHLENEMPG-SNILFVTVTDEESRRVERQSDEKTKAEIMNNVLRKLFGNK 399 (448)
Q Consensus 321 l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~a~~~~~~~~~e~~~~~~~~~L~~~~g~~ 399 (448)
+.|+++||++..-....+....+..+..+|.+. .+++ ..+|++++.++.+..|.+++++|+++.++ ++|+++||..
T Consensus 299 l~~~~~~w~~~~~~g~~~~~~~~~~~~~~~d~~--~~~~~~~~l~~~~~~~~a~~~~~~~~~e~~~~vl-~~L~~~~~~~ 375 (520)
T 1s3e_A 299 VYYKEPFWRKKDYCGTMIIDGEEAPVAYTLDDT--KPEGNYAAIMGFILAHKARKLARLTKEERLKKLC-ELYAKVLGSL 375 (520)
T ss_dssp EECSSCGGGGGTEEEEEEECSTTCSCSEEEECC--CTTSCSCEEEEEEETHHHHHHTTSCHHHHHHHHH-HHHHHHHTCG
T ss_pred EEeCCCcccCCCCCceeeccCCCCceEEEeeCC--CCCCCCCEEEEEccchhhhhhhcCCHHHHHHHHH-HHHHHHhCcc
Confidence 999999997521111222122222333344332 1233 37888999888888899999999999999 9999999865
Q ss_pred -CCCCceEeeccCCCCCCCCcccC-CCCCCCCHHHHHHHhcccCceEEccC
Q 013178 400 -IPEPQSIFVPRWWSNRFFNGSYS-NWPNGFTQQSYKELKVSICKLHVGLT 448 (448)
Q Consensus 400 -~~~~~~~~~~~W~~~~~~~g~~~-~~~~g~~~~~~~~~~~p~~~i~fAG~ 448 (448)
..+|.++..++|.++||+.|+|. +++||+.....+.+++|.+||||||+
T Consensus 376 ~~~~p~~~~~~~W~~~~~~~G~~~~~~~~g~~~~~~~~l~~p~~~L~fAG~ 426 (520)
T 1s3e_A 376 EALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRVLRQPVDRIYFAGT 426 (520)
T ss_dssp GGGCCSEEEEEEGGGCTTTCSSSCBCCCTTHHHHHGGGTTCCBTTEEECSG
T ss_pred ccCCccEEEEEeeCCCCCCCCCCccccCCCccccchHHHhCCCCCEEEeeh
Confidence 45788889999999999999997 78999865556688999999999994
No 3
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*
Probab=100.00 E-value=9.5e-42 Score=341.07 Aligned_cols=395 Identities=22% Similarity=0.344 Sum_probs=251.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcC-CCcEEEEecCCCCCceEEEcee-CCceeeecceeccCCCCCCCHHHHHHHHcCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAG-YKDFIILEASSRVGGRLHKGNI-GGHTIELGANWVNSGGPKSSPSLQIAKKIKL 103 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G-~~~V~vlE~~~~~GGr~~s~~~-~g~~~d~G~~~~~~~~~~~~~~~~l~~~lgl 103 (448)
+++||+|||||++||+||+.|+++| + +|+|||+++++|||+.|... +|+.+|+|++|++. ...++++.++.++|+
T Consensus 7 ~~~~VvIIGaG~aGL~AA~~L~~~G~~-~V~VlEa~~riGGr~~t~~~~~G~~~D~G~~~~~~--~~~~~~~~~~~~lg~ 83 (516)
T 1rsg_A 7 AKKKVIIIGAGIAGLKAASTLHQNGIQ-DCLVLEARDRVGGRLQTVTGYQGRKYDIGASWHHD--TLTNPLFLEEAQLSL 83 (516)
T ss_dssp EEEEEEEECCBHHHHHHHHHHHHTTCC-SEEEECSSSSSBTTCCEEECGGGCEEESSCCEECC--TTTCHHHHHHHHHHH
T ss_pred CCCcEEEECCCHHHHHHHHHHHhcCCC-CEEEEeCCCCCCCceeeeecCCCcEEecCCeEEec--CCCChHHHHHHHhCC
Confidence 4579999999999999999999999 9 79999999999999999876 79999999999987 246788888888887
Q ss_pred ceeec--ccccccceEEecCCcccc---HHHHHHHHHHHHHhHHHHHHHhhhccCCCCCCCcccHHHHHH--hhc---CC
Q 013178 104 KTFYS--DYANLTSNIYKQDGGLYQ---KHVVESAVRIAKTRDAFCTNLSKMLSSETTRDDDTSILGSQR--LLK---EV 173 (448)
Q Consensus 104 ~~~~~--~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~ 173 (448)
..... .........+..++.... ...+..+. ..+..+..... .... ..++.++.++.. +.+ .+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~---~~~~-~~~d~s~~~~l~~~l~~~~~~l 156 (516)
T 1rsg_A 84 NDGRTRFVFDDDNFIYIDEERGRVDHDKELLLEIVD---NEMSKFAELEF---HQHL-GVSDCSFFQLVMKYLLQRRQFL 156 (516)
T ss_dssp HHCCCCEECCCCCCEEEETTTEECTTCTTTCHHHHH---HHHHHHHHHHC-----------CCBHHHHHHHHHHHHGGGS
T ss_pred CCcceeEEECCCCEEEEcCCCccccccHHHHHHHHH---HHHHHHHHHHh---hhcc-CCCCCCHHHHHHHHHHHhhccc
Confidence 42111 111111223332332221 01111111 11111111111 1111 113455544311 111 11
Q ss_pred CCChHHHHHHHHh-hccccCCCcccccccccCCCcccccCCCCeeeeeCCCchHHHHHHHHHhhhcccccccCCCceecC
Q 013178 174 PMTPLEMAIDYFF-NDYEDAEPPRITSLKTTYPRNQLVDFGEDSYFVADPRGFESVVHSVAKQFLSHRHQVIRDPRLKLN 252 (448)
Q Consensus 174 ~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~l~~~~~~~~~g~~i~~~ 252 (448)
.....+.....+. ....++..+...++...+. .......+ ..+ ++.++++|++.+. +++|++|
T Consensus 157 ~~~~~~~~~~~~~~~~~~~g~~~~~~s~~~~~~-----~~~~~~~~--~~g-~~~l~~~l~~~l~--------~~~i~~~ 220 (516)
T 1rsg_A 157 TNDQIRYLPQLCRYLELWHGLDWKLLSAKDTYF-----GHQGRNAF--ALN-YDSVVQRIAQSFP--------QNWLKLS 220 (516)
T ss_dssp CHHHHHHHHHHHGGGHHHHTBCTTTSBHHHHCC-----CCSSCCEE--ESC-HHHHHHHHHTTSC--------GGGEETT
T ss_pred CHHHHHHHHHHHHHHHHHhCCChHHCChHHHHh-----hccCcchh--hhC-HHHHHHHHHHhCC--------CCEEEEC
Confidence 1110111111110 0001233333334332211 11222222 245 9999999999873 4579999
Q ss_pred ceeEEEEec-CCcEEEEeCCCcEEEeCEEEEeechhhccCC---------CccccCCCCHHHHHHHhhcCCcceeEEEEE
Q 013178 253 KVVRNISYS-KDKVTVKTEDGSVYQANYAIVSVSIGVLQSD---------FIEFTPNLPLWKKLAINNFNMAIYTKIFMK 322 (448)
Q Consensus 253 ~~V~~I~~~-~~~v~V~~~~g~~~~ad~VI~a~p~~~l~~~---------~~~~~p~l~~~~~~~~~~~~~~~~~~v~l~ 322 (448)
++|++|..+ +++|.|.+.+|++++||+||+|+|+.+++.. .+.|.|+||+.+.+++++++|+++.||++.
T Consensus 221 ~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~p~~~l~~~~~~~~~~~~~i~f~P~Lp~~~~~ai~~~~~~~~~Kv~l~ 300 (516)
T 1rsg_A 221 CEVKSITREPSKNVTVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVIQDAFDKIHFGALGKVIFE 300 (516)
T ss_dssp CCEEEEEECTTSCEEEEETTSCEEEEEEEEECCCHHHHHGGGSSCSCSTTCCEEESCCCHHHHHHTTSSCCCCCEEEEEE
T ss_pred CEEEEEEEcCCCeEEEEECCCcEEECCEEEECCCHHHhhhccccccccccceEecCCCCHHHHHHHHhCCCCcceEEEEE
Confidence 999999986 6679999999988999999999999999642 278999999999999999999999999999
Q ss_pred cCCCCCCCCCCcceEEEecccCCcc---------------------------cccccc----c-ccCCCCcEEEEEecch
Q 013178 323 FPYKFWPTGPGTEFFIYAHERRGYF---------------------------PIWQHL----E-NEMPGSNILFVTVTDE 370 (448)
Q Consensus 323 ~~~~~w~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~----~-~~~~~~~~l~~~~~~~ 370 (448)
|+++||++.. ..+........++. ..|... . ....+.++|++++.++
T Consensus 301 f~~~fW~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~g~ 379 (516)
T 1rsg_A 301 FEECCWSNES-SKIVTLANSTNEFVEIVRNAENLDELDSMLEREDSQKHTSVTCWSQPLFFVNLSKSTGVASFMMLMQAP 379 (516)
T ss_dssp ESSCCSCCSC-SEEEECCCCCHHHHHHHHHCCSHHHHHHHC---------CCCTTSSCEEEEEHHHHTSCSEEEEEECBT
T ss_pred eCCCCCCCCC-CcEEEeCCCCccchhhcccCcccchhhhcccccccccccccccccCceeEEEeeecCCCcEEEEEecch
Confidence 9999998732 22322221110000 112110 0 1123567899999999
Q ss_pred hhhhhhcC--ChHHHHHH---HHHHHHHHHhCC-----CCC---------CCc--eEeeccCCCCCCCCcccCCCCCCCC
Q 013178 371 ESRRVERQ--SDEKTKAE---IMNNVLRKLFGN-----KIP---------EPQ--SIFVPRWWSNRFFNGSYSNWPNGFT 429 (448)
Q Consensus 371 ~a~~~~~~--~~~e~~~~---~~~~~L~~~~g~-----~~~---------~~~--~~~~~~W~~~~~~~g~~~~~~~g~~ 429 (448)
.+..+..+ +++++++. ++ ++|.++||. ..+ .|. ++..++|..|||++|+|++++||+.
T Consensus 380 ~a~~~~~l~~~~~~~~~~~~~~l-~~l~~~~g~~~~~~~~~~~~~~~~a~~p~~~~~~~~~W~~dp~~~Gsys~~~~g~~ 458 (516)
T 1rsg_A 380 LTNHIESIREDKERLFSFFQPVL-NKIMKCLDSEDVIDGMRPIENIANANKPVLRNIIVSNWTRDPYSRGAYSACFPGDD 458 (516)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHH-HHHHHHTTCCCCEECCC-------CCSCEEEEEEECCTTTCTTTTTCCCCCBC---
T ss_pred HHHHHHhcCCCHHHHHHHHHHHH-HHHHhhccccccccCCCCcccccccCCCccceEEEecCCCCCCCCccCCCcCCCCC
Confidence 99999998 88888654 66 777777763 222 143 7899999999999999999999985
Q ss_pred H-HHHHHHhc-ccCceEEccC
Q 013178 430 Q-QSYKELKV-SICKLHVGLT 448 (448)
Q Consensus 430 ~-~~~~~~~~-p~~~i~fAG~ 448 (448)
. ...+.+++ |.+||||||+
T Consensus 459 ~~~~~~~l~~~~~~rl~FAGe 479 (516)
T 1rsg_A 459 PVDMVVAMSNGQDSRIRFAGE 479 (516)
T ss_dssp -CHHHHHHHHCSSSSEEECST
T ss_pred HHHHHHHhccCCCCcEEEecc
Confidence 4 34677764 7799999995
No 4
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=100.00 E-value=9.2e-41 Score=343.47 Aligned_cols=398 Identities=24% Similarity=0.403 Sum_probs=277.8
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEEce-eCCceeeecceeccCCCCCCCHHHHHHHHcCC
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGN-IGGHTIELGANWVNSGGPKSSPSLQIAKKIKL 103 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~~-~~g~~~d~G~~~~~~~~~~~~~~~~l~~~lgl 103 (448)
...+||+|||||++||+||+.|++.|+ +|+|+|+++++|||+.+.. .+|..+|.|++++++ ...+++..+++++|+
T Consensus 334 ~~~~~v~viG~G~~Gl~aA~~l~~~g~-~v~v~E~~~~~ggri~T~~~~~G~~vd~Ga~~i~G--~~~np~~~l~~~lGl 410 (776)
T 4gut_A 334 YHNKSVIIIGAGPAGLAAARQLHNFGI-KVTVLEAKDRIGGRVWDDKSFKGVTVGRGAQIVNG--CINNPVALMCEQLGI 410 (776)
T ss_dssp GTSCEEEEECCSHHHHHHHHHHHHHTC-EEEEECSSSSSCTTCCEECCSTTCCEESSCCEEEC--CTTCHHHHHHHHHTC
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCC-cEEEEecccceeceeeeccccCCeEeccCCeEEeC--CccChHHHHHHHhCC
Confidence 456899999999999999999999999 8999999999999999865 468999999999987 477889999999999
Q ss_pred ceeecccccccceEEecCCccccHHHHHHHHHHHHHhHHHHHHHhhhccCCCCCCCcccHHHH-----HHhhc---CCCC
Q 013178 104 KTFYSDYANLTSNIYKQDGGLYQKHVVESAVRIAKTRDAFCTNLSKMLSSETTRDDDTSILGS-----QRLLK---EVPM 175 (448)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~---~~~~ 175 (448)
+....... ..++..+|.................+......+.... . ...+.++... ..+.+ ....
T Consensus 411 ~~~~~~~~---~~l~~~~g~~~~~~~~~~~~~~~~~ll~~~~~~~~~~---~-~~~d~sl~~~~~~~~~~~l~~~gv~~~ 483 (776)
T 4gut_A 411 SMHKFGER---CDLIQEGGRITDPTIDKRMDFHFNALLDVVSEWRKDK---T-QLQDVPLGEKIEEIYKAFIKESGIQFS 483 (776)
T ss_dssp CCEECCSC---CCEECTTSCBCCHHHHHHHHHHHHHHHHHHHHHGGGC---C-GGGCCBHHHHHHHHHHHHHHHSCCCCC
T ss_pred cccccccc---cceEccCCcccchhHHHHHHHHHHHHHHHHHHHhhcc---c-ccccccHHHHHHHHHHHHHHhcCCCcc
Confidence 75543321 2245545555443222221112222222222221110 0 0012222211 11111 1111
Q ss_pred ChHHHHHHHHhh--ccccCCCcccccccccCCCcccccCCCCeeeeeCCCchHHHHHHHHHhhhcccccccCCCceecCc
Q 013178 176 TPLEMAIDYFFN--DYEDAEPPRITSLKTTYPRNQLVDFGEDSYFVADPRGFESVVHSVAKQFLSHRHQVIRDPRLKLNK 253 (448)
Q Consensus 176 ~~~~~~~~~~~~--~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~l~~~~~~~~~g~~i~~~~ 253 (448)
........+... ....+..+...+.........+..+++... ...+|++.++++|++. ++|++|+
T Consensus 484 ~l~~~~l~~~~~~l~~~~G~~l~~ls~~~~~~~~~~~~~~G~~~--~~~~G~~~l~~aLa~g-----------l~I~l~t 550 (776)
T 4gut_A 484 ELEGQVLQFHLSNLEYACGSNLHQVSARSWDHNEFFAQFAGDHT--LLTPGYSVIIEKLAEG-----------LDIQLKS 550 (776)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCTTSBBTTTTTGGGGSCCCCSCEE--ECTTCTHHHHHHHHTT-----------SCEESSC
T ss_pred chhHHHHHHHHHHHHHhcCCChHHcChhhhhhhhhHHhcCCCeE--EECChHHHHHHHHHhC-----------CcEEcCC
Confidence 111111111111 112333344444332221112223333333 3478999999988754 4799999
Q ss_pred eeEEEEecCCcEEEEeCCCcEEEeCEEEEeechhhccCCCccccCCCCHHHHHHHhhcCCcceeEEEEEcCCCCCCCC-C
Q 013178 254 VVRNISYSKDKVTVKTEDGSVYQANYAIVSVSIGVLQSDFIEFTPNLPLWKKLAINNFNMAIYTKIFMKFPYKFWPTG-P 332 (448)
Q Consensus 254 ~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~p~l~~~~~~~~~~~~~~~~~~v~l~~~~~~w~~~-~ 332 (448)
+|++|+.++++|.|++.+|++++||+||+|+|+.++++..+.|.|+||+.+.++++++.++++.|+++.|+++||++. .
T Consensus 551 ~V~~I~~~~~~v~V~~~~G~~i~Ad~VIvA~P~~vL~~~~i~f~P~Lp~~~~~ai~~l~~g~~~KV~l~f~~~FW~~~~~ 630 (776)
T 4gut_A 551 PVQCIDYSGDEVQVTTTDGTGYSAQKVLVTVPLALLQKGAIQFNPPLSEKKMKAINSLGAGIIEKIALQFPYRFWDSKVQ 630 (776)
T ss_dssp CEEEEECSSSSEEEEETTCCEEEESEEEECCCHHHHHTTCSEEESCCCHHHHHHHHHEEEECCEEEEEECSSCTTHHHHT
T ss_pred eeEEEEEcCCEEEEEECCCcEEEcCEEEECCCHHHHhhcccccCCCCCHHHHHHHHhCCCeeEEEEEEecCcccccccCC
Confidence 999999999999999999989999999999999999865678999999999999999999999999999999999862 1
Q ss_pred CcceEEEec---ccCCcccccccccccCCC-CcEEEEEecchhhhhhhcCChHHHHHHHHHHHHHHHhCCC-CCCCceEe
Q 013178 333 GTEFFIYAH---ERRGYFPIWQHLENEMPG-SNILFVTVTDEESRRVERQSDEKTKAEIMNNVLRKLFGNK-IPEPQSIF 407 (448)
Q Consensus 333 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~a~~~~~~~~~e~~~~~~~~~L~~~~g~~-~~~~~~~~ 407 (448)
+..++.... .+.+...+|++.. +.+ ..+|++++.|+.+..+.+++++|+++.++ ++|+++||.. .++|..+.
T Consensus 631 g~~~fG~l~~~~~~~~~~~~~~d~~--p~g~~~vL~~~i~G~~a~~l~~lsdeel~~~~l-~~L~~ifg~~~~~~P~~~~ 707 (776)
T 4gut_A 631 GADFFGHVPPSASKRGLFAVFYDMD--PQKKHSVLMSVIAGEAVASVRTLDDKQVLQQCM-ATLRELFKEQEVPDPTKYF 707 (776)
T ss_dssp TCSEEEECCSSGGGTTEEEEEEESC--TTSCSCEEEEEECTHHHHHHHTSCHHHHHHHHH-HHHHHHTTTSCCCCCSEEE
T ss_pred CCceEEeecCCcCCCceEEEEecCC--CCCCceEEEEEecchhHHHHHcCCHHHHHHHHH-HHHHHHhCcccccCcceEE
Confidence 223332222 2233334444322 222 46899999999998999999999999999 9999999863 56888999
Q ss_pred eccCCCCCCCCcccCCCCCCCCHHHHHHHhccc-CceEEccC
Q 013178 408 VPRWWSNRFFNGSYSNWPNGFTQQSYKELKVSI-CKLHVGLT 448 (448)
Q Consensus 408 ~~~W~~~~~~~g~~~~~~~g~~~~~~~~~~~p~-~~i~fAG~ 448 (448)
+++|..+||++|+|++++||+....++.+++|. +||||||+
T Consensus 708 vt~W~~dp~s~Gsys~~~~g~~~~~~~~L~~p~~grL~FAGE 749 (776)
T 4gut_A 708 VTRWSTDPWIQMAYSFVKTGGSGEAYDIIAEDIQGTVFFAGE 749 (776)
T ss_dssp ECCGGGCTTTCCSEEEEBTTCCTHHHHHHHCCBTTTEEECSG
T ss_pred EecCCCCCccCCCCCccCCCCchhHHHHHhCcCCCcEEEEeh
Confidence 999999999999999999998777788999996 99999995
No 5
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Probab=100.00 E-value=1.2e-40 Score=341.01 Aligned_cols=397 Identities=24% Similarity=0.421 Sum_probs=265.8
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEEceeCCceeeecceeccCCCCCCCHHHHHHHHcCC
Q 013178 24 SPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNIGGHTIELGANWVNSGGPKSSPSLQIAKKIKL 103 (448)
Q Consensus 24 ~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~l~~~lgl 103 (448)
....+||+|||||++||+||+.|++.|+ +|+|+|+++++||++.+.+..++.+|+|++++++ ...+++..+.+++|+
T Consensus 104 ~~~~~~v~viG~G~~gl~~a~~l~~~g~-~v~~~e~~~~~gg~~~~~~~~~~~~~~G~~~~~~--~~~~~~~~l~~~l~~ 180 (662)
T 2z3y_A 104 TKKTGKVIIIGSGVSGLAAARQLQSFGM-DVTLLEARDRVGGRVATFRKGNYVADLGAMVVTG--LGGNPMAVVSKQVNM 180 (662)
T ss_dssp SSCCCEEEEECCBHHHHHHHHHHHHTTC-EEEEECSSSSSBTTCCEEEETTEEEESSCCEECC--SBTCHHHHHHHHHTC
T ss_pred ccCCCeEEEECcCHHHHHHHHHHHHCCC-eEEEEecCCCCCCccccccccCchhhcCcEEEeC--CCCchHHHHHHHhCc
Confidence 4567899999999999999999999999 8999999999999999999899999999999987 246778889999998
Q ss_pred ceeecccccccceEEecCCccccHHHHHHHHHHHHHhHHHHHHHhh----------------------------------
Q 013178 104 KTFYSDYANLTSNIYKQDGGLYQKHVVESAVRIAKTRDAFCTNLSK---------------------------------- 149 (448)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------- 149 (448)
+....... ..++..+|..++..........+.........+..
T Consensus 181 ~~~~~~~~---~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 257 (662)
T 2z3y_A 181 ELAKIKQK---CPLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLNNKPVSLGQALEVVIQLQEKHVKDEQI 257 (662)
T ss_dssp CEEECCSC---CCEECTTSCBCCHHHHHHHHHHHHHHHHHHHHHHTTSCCCEETTEECBHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhccccc---ceEEeCCCcCCCcchhhhhhHHHHHHHHHHHHHHhcccccccCCCCCCHHHHHHHHHHhhhhhhhhhhh
Confidence 75543211 22455566554422110000000000000000000
Q ss_pred ----------------------------hccCCCCC----------CCcccH-----------HHHHH------------
Q 013178 150 ----------------------------MLSSETTR----------DDDTSI-----------LGSQR------------ 168 (448)
Q Consensus 150 ----------------------------~~~~~~~~----------~~~~~~-----------~~~~~------------ 168 (448)
.+...... ..+++. ..+..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~~s~~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 337 (662)
T 2z3y_A 258 EHWKKIVKTQEELKELLNKMVNLKEKIKELHQQYKEASEVKPPRDITAEFLVKSKHRDLTALCKEYDELAETQGKLEEKL 337 (662)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCCC--------CCTHHHHHHHHHHHHTTTHHHHHHHTHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhhhhhhhcchhhhHHHHhhhhhhhhhcccccccchhhhhhhhhhhHHHHHhhhhhhhhhhhhHHHHH
Confidence 00000000 000000 00000
Q ss_pred --hhcCCCC----Ch-HHHHHHHHhhcc--ccCCCcccccccccCCCcccccCCCCeeeeeCCCchHHHHHHHHHhhhcc
Q 013178 169 --LLKEVPM----TP-LEMAIDYFFNDY--EDAEPPRITSLKTTYPRNQLVDFGEDSYFVADPRGFESVVHSVAKQFLSH 239 (448)
Q Consensus 169 --~~~~~~~----~~-~~~~~~~~~~~~--~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~l~~~ 239 (448)
+....+. .. ......++.... ..+......|+........+ .+.+ .+..+++|++.|+++|++.
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~ls~~~~~~~~~~-~~~g--~~~~~~gG~~~l~~~La~~---- 410 (662)
T 2z3y_A 338 QELEANPPSDVYLSSRDRQILDWHFANLEFANATPLSTLSLKHWDQDDDF-EFTG--SHLTVRNGYSCVPVALAEG---- 410 (662)
T ss_dssp HHHTTSCCCSCSSCHHHHHHHHHHHHHHHHHTTSCGGGBBTTTTTTTGGG-CCBS--CCEEETTCTTHHHHHHTTT----
T ss_pred HHhhccCcccccccHHHHHHHHHHHHHHHHhcCCChhhcCHhhcCCCccc-ccCC--ceeeecCcHHHHHHHHHhc----
Confidence 0000000 00 011122221111 11233333333221111001 1111 2345589999999999875
Q ss_pred cccccCCCceecCceeEEEEecCCcEEEEeCC------CcEEEeCEEEEeechhhccCC--CccccCCCCHHHHHHHhhc
Q 013178 240 RHQVIRDPRLKLNKVVRNISYSKDKVTVKTED------GSVYQANYAIVSVSIGVLQSD--FIEFTPNLPLWKKLAINNF 311 (448)
Q Consensus 240 ~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~------g~~~~ad~VI~a~p~~~l~~~--~~~~~p~l~~~~~~~~~~~ 311 (448)
.+|++|++|++|+.++++|.|++.+ |++++||+||+|+|+.+|+++ .+.|.|+||+.+.++++++
T Consensus 411 -------l~I~l~~~V~~I~~~~~~v~V~~~~~~~~~~~~~~~Ad~VI~tvP~~vL~~l~~~i~f~P~LP~~k~~Ai~~l 483 (662)
T 2z3y_A 411 -------LDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRM 483 (662)
T ss_dssp -------CEEETTEEEEEEEEETTEEEEEEEESSCTTCEEEEEESEEEECCCHHHHHCSSCSSEEESCCCHHHHHHHHHS
T ss_pred -------CceecCCeEEEEEECCCcEEEEEeecccCCCCeEEEeCEEEECCCHHHHhcccCceEEcCCCCHHHHHHHHhC
Confidence 3699999999999999999998766 568999999999999999873 3679999999999999999
Q ss_pred CCcceeEEEEEcCCCCCCCCCCcceEEE-ec--ccCC-cccccccccccCCCCcEEEEEecchhhhhhhcCChHHHHHHH
Q 013178 312 NMAIYTKIFMKFPYKFWPTGPGTEFFIY-AH--ERRG-YFPIWQHLENEMPGSNILFVTVTDEESRRVERQSDEKTKAEI 387 (448)
Q Consensus 312 ~~~~~~~v~l~~~~~~w~~~~~~~~~~~-~~--~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~e~~~~~ 387 (448)
+|+++.||++.|+++||++.. ..+.. .+ ...+ ++..|.. .+.++|++++.|+.+..+..++++++++.+
T Consensus 484 ~~g~~~KV~l~f~~~fW~~~~--~~~G~l~~~~~~~~~~~~~~~~-----~~~~vL~~~~~G~~a~~~~~lsdee~~~~~ 556 (662)
T 2z3y_A 484 GFGNLNKVVLCFDRVFWDPSV--NLFGHVGSTTASRGELFLFWNL-----YKAPILLALVAGEAAGIMENISDDVIVGRC 556 (662)
T ss_dssp EECCCEEEEEECSSCCSCTTC--SEEEECCSSSTTTTEEEEEECC-----SSSSEEEEEECTHHHHHHTTSCHHHHHHHH
T ss_pred CccceeEEEEEcCcccccCCC--CceeeecCCCCCCCceeEEEeC-----CCCCEEEEEeccHhHHHHHhCCHHHHHHHH
Confidence 999999999999999998621 22221 11 1112 1222221 144699999999999999999999999999
Q ss_pred HHHHHHHHhCCC-CCCCceEeeccCCCCCCCCcccCCCCCCCCHHHHHHHhccc-------------CceEEccC
Q 013178 388 MNNVLRKLFGNK-IPEPQSIFVPRWWSNRFFNGSYSNWPNGFTQQSYKELKVSI-------------CKLHVGLT 448 (448)
Q Consensus 388 ~~~~L~~~~g~~-~~~~~~~~~~~W~~~~~~~g~~~~~~~g~~~~~~~~~~~p~-------------~~i~fAG~ 448 (448)
+ ++|+++||.. .++|..+.+++|.++||++|+|++++||+....++.+++|. +||||||+
T Consensus 557 l-~~L~~~~g~~~~~~p~~~~v~~W~~dp~~~Gsys~~~pg~~~~~~~~l~~p~~~~~~~~~~~~~~grl~FAGe 630 (662)
T 2z3y_A 557 L-AILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGE 630 (662)
T ss_dssp H-HHHHHHHCTTSSCCCSEEEECCTTTCTTTSSSCEECBTTCCTHHHHHHHCCBCC---------CCCCEEECSG
T ss_pred H-HHHHHHhCCcccCCCceeEEEEECCCCCCCcccccCCCCCchhhHHHHhCcCccccccccccCCCCcEEEEec
Confidence 9 9999999864 46888999999999999999999999999877788888875 69999995
No 6
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*
Probab=100.00 E-value=1.4e-41 Score=338.75 Aligned_cols=394 Identities=15% Similarity=0.180 Sum_probs=263.4
Q ss_pred CcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEEceeCCceeeecceeccCCCCCCCHHHHHHHHcCCceee
Q 013178 28 NSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNIGGHTIELGANWVNSGGPKSSPSLQIAKKIKLKTFY 107 (448)
Q Consensus 28 ~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~l~~~lgl~~~~ 107 (448)
+||+|||||++||+||+.|+++|+ +|+|||+++++|||+.|.+.+|+.+|.|+++++. .+.+++++++++|+....
T Consensus 40 ~~v~iiGaG~aGl~aA~~l~~~g~-~v~v~E~~~~~GGr~~t~~~~g~~~d~G~~~~~~---~~~~~~~~l~~lgl~~~~ 115 (495)
T 2vvm_A 40 WDVIVIGGGYCGLTATRDLTVAGF-KTLLLEARDRIGGRSWSSNIDGYPYEMGGTWVHW---HQSHVWREITRYKMHNAL 115 (495)
T ss_dssp EEEEEECCBHHHHHHHHHHHHTTC-CEEEECSSSBSBTTCCEEEETTEEEECSCCCBCT---TSHHHHHHHHHTTCTTCE
T ss_pred CCEEEECCcHHHHHHHHHHHHCCC-CEEEEeCCCCCCCcceecccCCeeecCCCeEecC---ccHHHHHHHHHcCCccee
Confidence 899999999999999999999999 7999999999999999999999999999999988 778999999999994332
Q ss_pred ccc---ccccceEEecC--Cccc--cHHHHHHHH-HHHHHhHHHHH-HHhhhccCCC-C-C------CCcccHHHHHHhh
Q 013178 108 SDY---ANLTSNIYKQD--GGLY--QKHVVESAV-RIAKTRDAFCT-NLSKMLSSET-T-R------DDDTSILGSQRLL 170 (448)
Q Consensus 108 ~~~---~~~~~~~~~~~--g~~~--~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~-~-~------~~~~~~~~~~~~~ 170 (448)
... .......+..+ ++.. +........ ..+..+.+... .....+.... . . .++.++.++.+-.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~ 195 (495)
T 2vvm_A 116 SPSFNFSRGVNHFQLRTNPTTSTYMTHEAEDELLRSALHKFTNVDGTNGRTVLPFPHDMFYVPEFRKYDEMSYSERIDQI 195 (495)
T ss_dssp EESCCCSSSCCEEEEESSTTCCEEECHHHHHHHHHHHHHHHHCSSSSTTTTTCSCTTSTTSSTTHHHHHTSBHHHHHHHH
T ss_pred ecccccCCCceEEEecCCCCceeecCHHHHHHHHHHHHHHHHccchhhhhhcCCCCCCcccCcchhhhhhhhHHHHHHHh
Confidence 221 11111223223 4432 221111111 11111111000 0000000000 0 0 0122333332211
Q ss_pred c-CCCCChHHHHHHHHhhccccCCCcccccccccCCCcccc-----cCCCCeeeeeCCCchHHHHHHHHHhhhccccccc
Q 013178 171 K-EVPMTPLEMAIDYFFNDYEDAEPPRITSLKTTYPRNQLV-----DFGEDSYFVADPRGFESVVHSVAKQFLSHRHQVI 244 (448)
Q Consensus 171 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~-----~~~~~~~~~~~~~G~~~l~~~l~~~l~~~~~~~~ 244 (448)
. ... .....+...+.. ..++.+++..|+..++...... .+........+++|++.++++|++.+.+
T Consensus 196 ~~~~~-~~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~------ 267 (495)
T 2vvm_A 196 RDELS-LNERSSLEAFIL-LCSGGTLENSSFGEFLHWWAMSGYTYQGCMDCLMSYKFKDGQSAFARRFWEEAAG------ 267 (495)
T ss_dssp GGGCC-HHHHHHHHHHHH-HHHSSCTTTSBHHHHHHHHHHTTSSHHHHHHHHHSEEETTCHHHHHHHHHHHHHT------
T ss_pred hccCC-HHHHHHHHHHHH-HhcCCCcchhhHHHHHHHHHHcCCCHHHHHhhhceEEeCCCHHHHHHHHHHHhhh------
Confidence 1 011 111222222211 1244555555654332211000 0000112234589999999999999876
Q ss_pred CC-CceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeechhhccCCCccccCCCCHHHHHHHhhcCCcceeEEEEEc
Q 013178 245 RD-PRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSIGVLQSDFIEFTPNLPLWKKLAINNFNMAIYTKIFMKF 323 (448)
Q Consensus 245 ~g-~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~p~l~~~~~~~~~~~~~~~~~~v~l~~ 323 (448)
.| ++|++|++|++|+.++++|.|++.+|++++||+||+|+|+.++++ +.|.|+||+.+.++++.+.|.++.|+++.|
T Consensus 268 ~g~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vI~a~~~~~l~~--i~~~p~lp~~~~~ai~~~~~~~~~kv~l~~ 345 (495)
T 2vvm_A 268 TGRLGYVFGCPVRSVVNERDAARVTARDGREFVAKRVVCTIPLNVLST--IQFSPALSTERISAMQAGHVSMCTKVHAEV 345 (495)
T ss_dssp TTCEEEESSCCEEEEEECSSSEEEEETTCCEEEEEEEEECCCGGGGGG--SEEESCCCHHHHHHHHHCCCCCCEEEEEEE
T ss_pred cCceEEEeCCEEEEEEEcCCEEEEEECCCCEEEcCEEEECCCHHHHhh--eeeCCCCCHHHHHHHHhcCCCceeEEEEEE
Confidence 45 889999999999998888999999998899999999999999987 568899999999999999999999999999
Q ss_pred CCCCCCCCCCcceEEEecccCCcccccccccccCCCCcEEEEEecchhhhhhhcCChHHHHHHHHHHHHHHHhCCCCCCC
Q 013178 324 PYKFWPTGPGTEFFIYAHERRGYFPIWQHLENEMPGSNILFVTVTDEESRRVERQSDEKTKAEIMNNVLRKLFGNKIPEP 403 (448)
Q Consensus 324 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~e~~~~~~~~~L~~~~g~~~~~~ 403 (448)
++++|+. +......+..+..+|... ..+.+..+|+++.. +.+ . +++++..+.++ ++|+++++. ..++
T Consensus 346 ~~~~~~~-----~~g~~~~~~~~~~~~~~~-~~~~~~~vl~~~~~-~~~-~---~~~~e~~~~~~-~~L~~~~~~-~~~~ 412 (495)
T 2vvm_A 346 DNKDMRS-----WTGIAYPFNKLCYAIGDG-TTPAGNTHLVCFGN-SAN-H---IQPDEDVRETL-KAVGQLAPG-TFGV 412 (495)
T ss_dssp SCGGGGG-----EEEEECSSCSSCEEEEEE-ECTTSCEEEEEEEC-STT-C---CCTTTCHHHHH-HHHHTTSTT-SCCE
T ss_pred CCccCCC-----ceeEecCCCCcEEEecCC-CCCCCCeEEEEEeC-ccc-c---CCCHHHHHHHH-HHHHHhcCC-CCCc
Confidence 9999952 222222233444455432 12234467777653 322 1 46667788999 999998754 4567
Q ss_pred ceEeeccCCCCCCCCcccCCCCCCCCHHHHHHHhcccCceEEccC
Q 013178 404 QSIFVPRWWSNRFFNGSYSNWPNGFTQQSYKELKVSICKLHVGLT 448 (448)
Q Consensus 404 ~~~~~~~W~~~~~~~g~~~~~~~g~~~~~~~~~~~p~~~i~fAG~ 448 (448)
.++.+++|..+||++|+|++++||+....++.+++|.+||||||+
T Consensus 413 ~~~~~~~W~~dp~~~g~y~~~~~g~~~~~~~~l~~p~~~l~fAGe 457 (495)
T 2vvm_A 413 KRLVFHNWVKDEFAKGAWFFSRPGMVSECLQGLREKHGGVVFANS 457 (495)
T ss_dssp EEEEECCTTTCTTTSSSSCCCCTTHHHHHHHHHHCCBTTEEECCG
T ss_pred eEEEEeEcCCCCCCCCCccCcCCCcchhhHHHHhCcCCCEEEech
Confidence 888999999999999999999999876778999999999999994
No 7
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A
Probab=100.00 E-value=1.8e-40 Score=343.02 Aligned_cols=397 Identities=25% Similarity=0.433 Sum_probs=264.3
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEEceeCCceeeecceeccCCCCCCCHHHHHHHHcCC
Q 013178 24 SPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNIGGHTIELGANWVNSGGPKSSPSLQIAKKIKL 103 (448)
Q Consensus 24 ~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~l~~~lgl 103 (448)
....+||+|||||++||+||+.|++.|+ +|+|||+++++||++.+++..++.+|+|++++++ ...+++..+.+++|+
T Consensus 275 ~~~~~~v~viG~G~aGl~~A~~l~~~g~-~v~v~E~~~~~GG~~~~~~~~~~~~~~G~~~~~~--~~~~~~~~l~~~lg~ 351 (852)
T 2xag_A 275 TKKTGKVIIIGSGVSGLAAARQLQSFGM-DVTLLEARDRVGGRVATFRKGNYVADLGAMVVTG--LGGNPMAVVSKQVNM 351 (852)
T ss_dssp SSCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSSSCTTCCEEEETTEEEESSCCEECC--SBTCHHHHHHHHTTC
T ss_pred cCCCCeEEEECCCHHHHHHHHHHHHCCC-cEEEEEecCcCCCceeeecccccchhcCceEecC--CCCchHHHHHHHhCC
Confidence 3567899999999999999999999999 8999999999999999999899999999999987 246778889999998
Q ss_pred ceeecccccccceEEecCCccccHHHHHHHHHHHHHhHHHHHHHhh----------------------------------
Q 013178 104 KTFYSDYANLTSNIYKQDGGLYQKHVVESAVRIAKTRDAFCTNLSK---------------------------------- 149 (448)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------- 149 (448)
....... ...+|..+|..++..........+..+......+..
T Consensus 352 ~~~~~~~---~~~~~~~~G~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~slg~~~e~v~~~~er~~~~e~l 428 (852)
T 2xag_A 352 ELAKIKQ---KCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLNNKPVSLGQALEVVIQLQEKHVKDEQI 428 (852)
T ss_dssp CEEECCC---CCCEECTTSCBCCHHHHHHHHHHHHHHHHHHHHHHHTSCCCEETTEECBHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhccc---cceEEecCCccccchhhhhhhhhhhhhHHHHHHHhhhhhhhcccCCCccHHHHHHHhhhhhhhhcchhHH
Confidence 7554321 122455566554422110000000000000000000
Q ss_pred --------------------------------h----ccCCCCCC--CcccH-----------HHHHHh-----------
Q 013178 150 --------------------------------M----LSSETTRD--DDTSI-----------LGSQRL----------- 169 (448)
Q Consensus 150 --------------------------------~----~~~~~~~~--~~~~~-----------~~~~~~----------- 169 (448)
. .....+.+ .++++ ..+..+
T Consensus 429 ~~~~~i~~~~~~i~~~~~~l~~~~~~l~~l~~~~~~~~~~~~p~~~~~e~s~rs~~~~l~~~~~~~~~l~~~~~~l~~~l 508 (852)
T 2xag_A 429 EHWKKIVKTQEELKELLNKMVNLKEKIKELHQQYKEASEVKPPRDITAEFLVKSKHRDLTALCKEYDELAETQGKLEEKL 508 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhhhhhhhhhhhhhhHHHHHHhHHHHHHHHHHHhhhhcccccccchhhhhhhhhhhhHHHHHHHHhhhhhhhhhHHHHH
Confidence 0 00000000 00000 000000
Q ss_pred ---hcCCC-----CChHHHHHHHHhhccc--cCCCcccccccccCCCcccccCCCCeeeeeCCCchHHHHHHHHHhhhcc
Q 013178 170 ---LKEVP-----MTPLEMAIDYFFNDYE--DAEPPRITSLKTTYPRNQLVDFGEDSYFVADPRGFESVVHSVAKQFLSH 239 (448)
Q Consensus 170 ---~~~~~-----~~~~~~~~~~~~~~~~--~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~l~~~ 239 (448)
..... ......++.++..... .+.....+++........+ .+.+ .+..+++|++.|+++|++.+
T Consensus 509 ~~l~~~~~~~~~ls~~~~~~l~~~~~~~e~~~~~~l~~lSl~~~~~~~~~-~~~g--~~~~~~gG~~~L~~aLa~~l--- 582 (852)
T 2xag_A 509 QELEANPPSDVYLSSRDRQILDWHFANLEFANATPLSTLSLKHWDQDDDF-EFTG--SHLTVRNGYSCVPVALAEGL--- 582 (852)
T ss_dssp HHHHHSCCCSCSSCTTHHHHHHHHHHHHHHHHTSCTTTBBTTTTTGGGGG-CCBS--CCEEETTCTTHHHHHHTTTC---
T ss_pred HhhhccCcccccCCHHHHHHHHHHHhhhcccccCChHhhhhhhhhhcccc-ccCC--ceEEecCcHHHHHHHHHhCC---
Confidence 00000 0001111222111111 1222222333211111001 1111 23455899999999998753
Q ss_pred cccccCCCceecCceeEEEEecCCcEEEEeCC------CcEEEeCEEEEeechhhccCC--CccccCCCCHHHHHHHhhc
Q 013178 240 RHQVIRDPRLKLNKVVRNISYSKDKVTVKTED------GSVYQANYAIVSVSIGVLQSD--FIEFTPNLPLWKKLAINNF 311 (448)
Q Consensus 240 ~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~------g~~~~ad~VI~a~p~~~l~~~--~~~~~p~l~~~~~~~~~~~ 311 (448)
+|++|++|++|+.++++|.|++.+ |++++||+||+|+|+.+|+++ .+.|.|+||..+.++++++
T Consensus 583 --------~I~Lnt~V~~I~~~~~gV~V~~~~~~~~~~g~~i~AD~VIvTvPl~vLk~l~~~I~F~P~LP~~k~~AI~~l 654 (852)
T 2xag_A 583 --------DIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRM 654 (852)
T ss_dssp --------CEECSEEEEEEEEETTEEEEEEEESSSTTCEEEEEESEEEECCCHHHHHCSSCSSEEESCCCHHHHHHHHHS
T ss_pred --------CEEeCCeEEEEEEcCCcEEEEEeecccCCCCeEEECCEEEECCCHHHHHhhhcccccCCCCCHHHHHHHHcC
Confidence 699999999999999999988765 568999999999999999873 3679999999999999999
Q ss_pred CCcceeEEEEEcCCCCCCCCCCcceEEEe-c--ccCC-cccccccccccCCCCcEEEEEecchhhhhhhcCChHHHHHHH
Q 013178 312 NMAIYTKIFMKFPYKFWPTGPGTEFFIYA-H--ERRG-YFPIWQHLENEMPGSNILFVTVTDEESRRVERQSDEKTKAEI 387 (448)
Q Consensus 312 ~~~~~~~v~l~~~~~~w~~~~~~~~~~~~-~--~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~e~~~~~ 387 (448)
+|+++.||++.|+++||++.. ..+.+. + ...+ ++..|... +.++|++++.|+.+..+..++++++++.+
T Consensus 655 ~~g~v~KV~L~F~~~fW~~~~--~~fG~l~~~~~~~~~l~~~~~~~-----~~pvLl~~v~G~~a~~l~~lsdeel~~~~ 727 (852)
T 2xag_A 655 GFGNLNKVVLCFDRVFWDPSV--NLFGHVGSTTASRGELFLFWNLY-----KAPILLALVAGEAAGIMENISDDVIVGRC 727 (852)
T ss_dssp EECCCEEEEEECSSCCSCTTC--CEEEECCSSSTTTTTTCEEEECS-----SSSEEEEEECHHHHHHGGGSCHHHHHHHH
T ss_pred CccceEEEEEEcCCcccCCCC--CeeeeeccccCCCCceEEEecCC-----CCCEEEEEecCcCHHHHhcCCHHHHHHHH
Confidence 999999999999999998622 222211 1 1122 22223221 34589999999999999999999999999
Q ss_pred HHHHHHHHhCCC-CCCCceEeeccCCCCCCCCcccCCCCCCCCHHHHHHHhccc-------------CceEEccC
Q 013178 388 MNNVLRKLFGNK-IPEPQSIFVPRWWSNRFFNGSYSNWPNGFTQQSYKELKVSI-------------CKLHVGLT 448 (448)
Q Consensus 388 ~~~~L~~~~g~~-~~~~~~~~~~~W~~~~~~~g~~~~~~~g~~~~~~~~~~~p~-------------~~i~fAG~ 448 (448)
+ ++|+++||.. .++|..+.+++|.++||++|+|++++||+....++.+++|. +||||||+
T Consensus 728 l-~~L~~ifG~~~~~~P~~~~vtrW~~dp~s~GsYs~~~pG~~~~~~~~L~~P~~~~~~~p~~~~~~grL~FAGE 801 (852)
T 2xag_A 728 L-AILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGE 801 (852)
T ss_dssp H-HHHHHHHCTTTCCCCSEEEECCTTTCTTTSSSCEECBTTCCTTHHHHTTSCBCCCCSSTTCCCCCCCEEECSG
T ss_pred H-HHHHHHhCccccCCceEEEEEecCCCCCcCccccccCCCcchhhHHHHhCccccccccccccCCCCcEEEEeh
Confidence 9 9999999864 46788999999999999999999999999777778888875 69999995
No 8
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*
Probab=100.00 E-value=3.1e-41 Score=332.69 Aligned_cols=395 Identities=20% Similarity=0.281 Sum_probs=268.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEEceeCCceeeecceeccCCCCCCCHHHHHHHHcCCce
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNIGGHTIELGANWVNSGGPKSSPSLQIAKKIKLKT 105 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~l~~~lgl~~ 105 (448)
.++||+|||||++||+||+.|+++|+ +|+|||+++++||++.+...+|+.+|.|+++++. .+..+.++++++|+..
T Consensus 4 ~~~~v~iiG~G~~Gl~aA~~l~~~g~-~v~v~E~~~~~GG~~~~~~~~g~~~~~g~~~~~~---~~~~~~~~~~~~g~~~ 79 (453)
T 2yg5_A 4 LQRDVAIVGAGPSGLAAATALRKAGL-SVAVIEARDRVGGRTWTDTIDGAVLEIGGQWVSP---DQTALISLLDELGLKT 79 (453)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSSSCTTCCEEEETTEEEECSCCCBCT---TCHHHHHHHHHTTCCE
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCC-cEEEEECCCCCCCceeccccCCceeccCCeEecC---ccHHHHHHHHHcCCcc
Confidence 46799999999999999999999999 7999999999999999988889999999999987 6778999999999986
Q ss_pred eecccccccceEEecC-Cccc---------cHHHHHHHHHHHHHhHHHHHHHhhhccCCCCC---CCcccHHHHHHhhcC
Q 013178 106 FYSDYANLTSNIYKQD-GGLY---------QKHVVESAVRIAKTRDAFCTNLSKMLSSETTR---DDDTSILGSQRLLKE 172 (448)
Q Consensus 106 ~~~~~~~~~~~~~~~~-g~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 172 (448)
....... ..++..+ |+.+ .......+......+..+...+.......... ..+.++.++..-.
T Consensus 80 ~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~-- 155 (453)
T 2yg5_A 80 FERYREG--ESVYISSAGERTRYTGDSFPTNETTKKEMDRLIDEMDDLAAQIGAEEPWAHPLARDLDTVSFKQWLINQ-- 155 (453)
T ss_dssp EECCCCS--EEEEECTTSCEEEECSSSCSCCHHHHHHHHHHHHHHHHHHHHHCSSCGGGSTTHHHHHSSBHHHHHHHH--
T ss_pred cccccCC--CEEEEeCCCceeeccCCCCCCChhhHHHHHHHHHHHHHHHhhcCCCCCCCCcchhhhhhccHHHHHHhh--
Confidence 5543221 1222212 3221 11111111111111111111111000000000 0123333332211
Q ss_pred CCCChHHHHHHHHhhccccCCCcc-cccccccCCCcccccCCC--------CeeeeeCCCchHHHHHHHHHhhhcccccc
Q 013178 173 VPMTPLEMAIDYFFNDYEDAEPPR-ITSLKTTYPRNQLVDFGE--------DSYFVADPRGFESVVHSVAKQFLSHRHQV 243 (448)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~--------~~~~~~~~~G~~~l~~~l~~~l~~~~~~~ 243 (448)
........+...+.. ..++.+++ ..|+...+.. +...+. ......+++|++.++++|++.+
T Consensus 156 ~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l------- 225 (453)
T 2yg5_A 156 SDDAEARDNIGLFIA-GGMLTKPAHSFSALQAVLM--AASAGSFSHLVDEDFILDKRVIGGMQQVSIRMAEAL------- 225 (453)
T ss_dssp CSCHHHHHHHHHHHC-CCCCCSCTTSSBHHHHHHH--HHHTTCHHHHHCHHHHTCEEETTCTHHHHHHHHHHH-------
T ss_pred cCCHHHHHHHHHHHH-hhcccCCcccccHHHHHHH--hccCCcHhhhccCCCcceEEEcCChHHHHHHHHHhc-------
Confidence 111222222333221 22444555 5554432211 001110 0112345899999999999985
Q ss_pred cCCCceecCceeEEEEecCCc-EEEEeCCCcEEEeCEEEEeechhhccCCCccccCCCCHHHHHHHhhcCCcceeEEEEE
Q 013178 244 IRDPRLKLNKVVRNISYSKDK-VTVKTEDGSVYQANYAIVSVSIGVLQSDFIEFTPNLPLWKKLAINNFNMAIYTKIFMK 322 (448)
Q Consensus 244 ~~g~~i~~~~~V~~I~~~~~~-v~V~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~p~l~~~~~~~~~~~~~~~~~~v~l~ 322 (448)
|++|++|++|++|+.++++ |.|.+ +|++++||+||+|+|+.++.+ +.+.|+||+.+.++++++++.+..|+++.
T Consensus 226 --g~~i~~~~~V~~i~~~~~~~v~v~~-~~~~~~ad~VI~a~p~~~~~~--l~~~p~lp~~~~~~i~~~~~~~~~kv~l~ 300 (453)
T 2yg5_A 226 --GDDVFLNAPVRTVKWNESGATVLAD-GDIRVEASRVILAVPPNLYSR--ISYDPPLPRRQHQMHQHQSLGLVIKVHAV 300 (453)
T ss_dssp --GGGEECSCCEEEEEEETTEEEEEET-TTEEEEEEEEEECSCGGGGGG--SEEESCCCHHHHHHGGGEEECCEEEEEEE
T ss_pred --CCcEEcCCceEEEEEeCCceEEEEE-CCeEEEcCEEEEcCCHHHHhc--CEeCCCCCHHHHHHHhcCCCcceEEEEEE
Confidence 6799999999999998888 88887 667899999999999999887 55789999999999999999999999999
Q ss_pred cCCCCCCCCCCcceEEEecccCCcccccccccccCCC-CcEEEEEecchhhhhhhcCChHHHHHHHHHHHHHHHhCCCCC
Q 013178 323 FPYKFWPTGPGTEFFIYAHERRGYFPIWQHLENEMPG-SNILFVTVTDEESRRVERQSDEKTKAEIMNNVLRKLFGNKIP 401 (448)
Q Consensus 323 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~a~~~~~~~~~e~~~~~~~~~L~~~~g~~~~ 401 (448)
|+++||++. +....+.. .+..+..+|.+. .+++ ..+|++++.++.++.|.+++++++++.++ ++|+++||....
T Consensus 301 ~~~~~w~~~-~~~g~~~~-~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l-~~L~~~~~~~~~ 375 (453)
T 2yg5_A 301 YETPFWRED-GLSGTGFG-ASEVVQEVYDNT--NHEDDRGTLVAFVSDEKADAMFELSAEERKATIL-ASLARYLGPKAE 375 (453)
T ss_dssp ESSCGGGGG-TEEEEEEC-TTSSSCEEEECC--CTTCSSEEEEEEEEHHHHHHHHHSCHHHHHHHHH-HHHHHHHCGGGG
T ss_pred ECCCCCCCC-CCCceeec-CCCCeEEEEeCC--CCCCCCCEEEEEeccHHHHHHhcCCHHHHHHHHH-HHHHHHhCccCC
Confidence 999999752 11112222 222333334332 1223 36888888888888899999999999999 999999987666
Q ss_pred CCceEeeccCCCCCCCCcccC-CCCCCCCHHHHHHHhcccCceEEccC
Q 013178 402 EPQSIFVPRWWSNRFFNGSYS-NWPNGFTQQSYKELKVSICKLHVGLT 448 (448)
Q Consensus 402 ~~~~~~~~~W~~~~~~~g~~~-~~~~g~~~~~~~~~~~p~~~i~fAG~ 448 (448)
+|.++..++|.++||++|+|. +++||+.....+.+++|.+||||||+
T Consensus 376 ~p~~~~~~~W~~~~~~~G~~~~~~~~g~~~~~~~~~~~p~~~l~~aG~ 423 (453)
T 2yg5_A 376 EPVVYYESDWGSEEWTRGCYAASFDLGGLHRYGADSRTPVGPIHFSCS 423 (453)
T ss_dssp CCSEEEECCTTTCTTTCSSSCEEECTTHHHHHGGGTTCCBTTEEECCG
T ss_pred CccEEEEeecCCCCCCCCCCcCcCCCCccccchHHHhCCcCceEEeec
Confidence 788889999999999999986 57888765555678999999999994
No 9
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*
Probab=100.00 E-value=4.1e-40 Score=328.41 Aligned_cols=396 Identities=19% Similarity=0.166 Sum_probs=259.2
Q ss_pred CCCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEEce--eCCceeeecceeccCCCCCCCHHHHHHHH
Q 013178 23 TSPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGN--IGGHTIELGANWVNSGGPKSSPSLQIAKK 100 (448)
Q Consensus 23 ~~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~~--~~g~~~d~G~~~~~~~~~~~~~~~~l~~~ 100 (448)
.+..++||+|||||++||+||+.|++.|+ +|+|||+++++||++.+.. ..++.+|.|+++++. .+..+.+++++
T Consensus 29 ~~~~~~~v~IiGaG~~Gl~aA~~l~~~g~-~v~vlE~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~ 104 (498)
T 2iid_A 29 ATSNPKHVVIVGAGMAGLSAAYVLAGAGH-QVTVLEASERPGGRVRTYRNEEAGWYANLGPMRLPE---KHRIVREYIRK 104 (498)
T ss_dssp CCSSCCEEEEECCBHHHHHHHHHHHHHTC-EEEEECSSSSSBTTCCEEEETTTTEEEESSCCCEET---TCHHHHHHHHH
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHhCCC-eEEEEECCCCCCCceeeeccCCCCchhhcCcccccc---hHHHHHHHHHH
Confidence 34557899999999999999999999999 8999999999999998877 468899999999987 67788999999
Q ss_pred cCCceeecccccccceEEecCCccccHHH--------------------HHHHHH-HHHHhHHHHHHHh-hhccCCCCCC
Q 013178 101 IKLKTFYSDYANLTSNIYKQDGGLYQKHV--------------------VESAVR-IAKTRDAFCTNLS-KMLSSETTRD 158 (448)
Q Consensus 101 lgl~~~~~~~~~~~~~~~~~~g~~~~~~~--------------------~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~ 158 (448)
+|+..............+. +|....... ....+. ............. ...... .
T Consensus 105 ~g~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 180 (498)
T 2iid_A 105 FDLRLNEFSQENDNAWYFI-KNIRKKVGEVKKDPGLLKYPVKPSEAGKSAGQLYEESLGKVVEELKRTNCSYILNK---Y 180 (498)
T ss_dssp TTCCEEEECSCCTTSEEEE-TTEEEEHHHHHHCGGGGCCCCCGGGTTCCHHHHHHHHTHHHHHHHHHSCHHHHHHH---H
T ss_pred hCCCceeecccCCccEEEe-CCeeecccccccCccccccCCCccccCCCHHHHHHHHHHHHHHHHhhccHHHHHHH---h
Confidence 9987543221111111222 332211000 000100 0000000000000 000000 0
Q ss_pred CcccHHHHHHhhcCCCCChHHHHHHHHhhccccCCCcccccccccCCCcccccCCCCeeeeeCCCchHHHHHHHHHhhhc
Q 013178 159 DDTSILGSQRLLKEVPMTPLEMAIDYFFNDYEDAEPPRITSLKTTYPRNQLVDFGEDSYFVADPRGFESVVHSVAKQFLS 238 (448)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~l~~ 238 (448)
+++++.++..-...+.....+.+.........+. .+..... .....+.....+..+++|++.++++|++.+.
T Consensus 181 ~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~--~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~- 252 (498)
T 2iid_A 181 DTYSTKEYLIKEGDLSPGAVDMIGDLLNEDSGYY-----VSFIESL--KHDDIFAYEKRFDEIVDGMDKLPTAMYRDIQ- 252 (498)
T ss_dssp TTSBHHHHHHHTSCCCHHHHHHHHHHTTCGGGTT-----SBHHHHH--HHHHHHTTCCCEEEETTCTTHHHHHHHHHTG-
T ss_pred hhhhHHHHHHHccCCCHHHHHHHHHhcCcccchh-----HHHHHHH--HHHhccccCcceEEeCCcHHHHHHHHHHhcc-
Confidence 1233333322111111111111111110000000 0000000 0000011122334568999999999999973
Q ss_pred ccccccCCCceecCceeEEEEecCCcEEEEeCCCc----EEEeCEEEEeechhhccCCCccccCCCCHHHHHHHhhcCCc
Q 013178 239 HRHQVIRDPRLKLNKVVRNISYSKDKVTVKTEDGS----VYQANYAIVSVSIGVLQSDFIEFTPNLPLWKKLAINNFNMA 314 (448)
Q Consensus 239 ~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~g~----~~~ad~VI~a~p~~~l~~~~~~~~p~l~~~~~~~~~~~~~~ 314 (448)
.+|++|++|++|+.++++|.|++.+|+ +++||+||+|+|+..+.+ +.|.|+||+.+.+++++++|+
T Consensus 253 --------~~i~~~~~V~~I~~~~~~v~v~~~~~~~~~~~~~ad~vI~t~p~~~~~~--i~f~p~Lp~~~~~ai~~l~~~ 322 (498)
T 2iid_A 253 --------DKVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRAVRL--IKFNPPLLPKKAHALRSVHYR 322 (498)
T ss_dssp --------GGEESSCEEEEEEECSSCEEEEEECSSSCCCEEEESEEEECSCHHHHTT--SEEESCCCHHHHHHHHHCCEE
T ss_pred --------cccccCCEEEEEEECCCeEEEEEecCCcccceEEeCEEEECCChHHHhh--eecCCCCCHHHHHHHHhCCCc
Confidence 379999999999999888999887764 589999999999999886 778899999999999999999
Q ss_pred ceeEEEEEcCCCCCCC-CCCcceEEEecccCCcccccccccccCCCCcEEEEEecchhhhhhhcCChHHHHHHHHHHHHH
Q 013178 315 IYTKIFMKFPYKFWPT-GPGTEFFIYAHERRGYFPIWQHLENEMPGSNILFVTVTDEESRRVERQSDEKTKAEIMNNVLR 393 (448)
Q Consensus 315 ~~~~v~l~~~~~~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~e~~~~~~~~~L~ 393 (448)
++.|+++.|+++||++ +..+.. ... +.....++++....+.+..+|+++++++.+..+..++++++++.++ ++|+
T Consensus 323 ~~~kv~l~~~~~~w~~~~~~~~~-~~~--~~~~~~~~~~s~~~p~g~~~L~~~~~g~~a~~~~~~~~~~~~~~~l-~~L~ 398 (498)
T 2iid_A 323 SGTKIFLTCTTKFWEDDGIHGGK-STT--DLPSRFIYYPNHNFTNGVGVIIAYGIGDDANFFQALDFKDCADIVF-NDLS 398 (498)
T ss_dssp CEEEEEEEESSCGGGGGTCCSSE-EEE--SSTTCEEECCSSCCTTSCEEEEEEEEHHHHHTTTTSCHHHHHHHHH-HHHH
T ss_pred ceeEEEEEeCCCCccCCCccCCc-ccC--CCCcceEEECCCCCCCCCcEEEEEeCCccHhhhhcCCHHHHHHHHH-HHHH
Confidence 9999999999999976 222222 222 1222233333222344567888888888888898999999999999 9999
Q ss_pred HHhCCCCCC----CceEeeccCCCCCCCCcccCCCCCCCCHHHHHHHhcccCceEEccC
Q 013178 394 KLFGNKIPE----PQSIFVPRWWSNRFFNGSYSNWPNGFTQQSYKELKVSICKLHVGLT 448 (448)
Q Consensus 394 ~~~g~~~~~----~~~~~~~~W~~~~~~~g~~~~~~~g~~~~~~~~~~~p~~~i~fAG~ 448 (448)
++||...++ .....+++|..+||+.|+|++++||+...+.+.+++|.+||||||+
T Consensus 399 ~~~g~~~~~~~~~~~~~~~~~W~~~p~~~G~~~~~~~~~~~~~~~~l~~p~~~l~fAGe 457 (498)
T 2iid_A 399 LIHQLPKKDIQSFCYPSVIQKWSLDKYAMGGITTFTPYQFQHFSDPLTASQGRIYFAGE 457 (498)
T ss_dssp HHHTCCHHHHHHHEEEEEEEEGGGCTTTCSSEECCCTTHHHHHHHHHHCCBTTEEECSG
T ss_pred HHcCCChhhhhhhcCccEEEecCCCCCCCceeeecCCcchHHHHHHHhCCCCcEEEEEc
Confidence 999732211 1236789999999999999999999877778899999999999995
No 10
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*
Probab=100.00 E-value=8.3e-39 Score=318.25 Aligned_cols=404 Identities=15% Similarity=0.195 Sum_probs=257.0
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEEcee-----------------CCceeeecceeccC
Q 013178 24 SPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNI-----------------GGHTIELGANWVNS 86 (448)
Q Consensus 24 ~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~~~-----------------~g~~~d~G~~~~~~ 86 (448)
.++.+||+|||||++||+||+.|+++|+ +|+|||+++++||++.+... ++..+|.|+++++.
T Consensus 8 ~~~~~~v~IIGaG~aGl~aA~~L~~~g~-~v~v~E~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 86 (489)
T 2jae_A 8 VKGSHSVVVLGGGPAGLCSAFELQKAGY-KVTVLEARTRPGGRVWTARGGSEETDLSGETQKCTFSEGHFYNVGATRIPQ 86 (489)
T ss_dssp CCSCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSSSCTTCCEEETTCEEECTTSCEEECCCCTTCEEESSCCCEET
T ss_pred ccCCCCEEEECCCHHHHHHHHHHHHCCC-CEEEEeccCCCCCceeeeccCcccccccchhhhhcccCCCcCCcchhhccc
Confidence 4567899999999999999999999999 89999999999999988664 57889999999987
Q ss_pred CCCCCCHHHHHHHHcCCceeecccccccceEE-ecC----CccccHHHH-HHHHHHHHHhHHHHHHHhhhccCCCCCCCc
Q 013178 87 GGPKSSPSLQIAKKIKLKTFYSDYANLTSNIY-KQD----GGLYQKHVV-ESAVRIAKTRDAFCTNLSKMLSSETTRDDD 160 (448)
Q Consensus 87 ~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~-~~~----g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (448)
.+ .+.++++++|+.............++ ..+ |..++.... ......+..+....... ..+.......++
T Consensus 87 ---~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~ 161 (489)
T 2jae_A 87 ---SH-ITLDYCRELGVEIQGFGNQNANTFVNYQSDTSLSGQSVTYRAAKADTFGYMSELLKKATDQ-GALDQVLSREDK 161 (489)
T ss_dssp ---TS-THHHHHHHHTCCEEEECCCCTTSEEECCCSSTTTTCCEEHHHHHHHHHHHHHHHHHHHHHH-TTTTTTSCHHHH
T ss_pred ---HH-HHHHHHHHcCCceEEccccCCCceEEecCCcccCCccccHHHHhhhhhccHHHHHHHHHhc-cccccccchhhH
Confidence 55 89999999999865433222223344 422 655542211 11111111111111000 001000000001
Q ss_pred ccHHHHHH-hhcCCCC-ChHHHHH-HHHhhcc---ccCC-----CcccccccccCCCcc-cccCCCCeeeeeCCCchHHH
Q 013178 161 TSILGSQR-LLKEVPM-TPLEMAI-DYFFNDY---EDAE-----PPRITSLKTTYPRNQ-LVDFGEDSYFVADPRGFESV 228 (448)
Q Consensus 161 ~~~~~~~~-~~~~~~~-~~~~~~~-~~~~~~~---~~~~-----~~~~~s~~~~~~~~~-~~~~~~~~~~~~~~~G~~~l 228 (448)
.++.++.+ +...... ....... .++.... ..+. +....+...+..... .........+..+++|++.|
T Consensus 162 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l 241 (489)
T 2jae_A 162 DALSEFLSDFGDLSDDGRYLGSSRRGYDSEPGAGLNFGTEKKPFAMQEVIRSGIGRNFSFDFGYDQAMMMFTPVGGMDRI 241 (489)
T ss_dssp HHHHHHHHHHTTCCTTSCCCCCGGGCEEECCCBTTCCCEECCCCCHHHHHHHTTTTTGGGGGCTTTSSSEEEETTCTTHH
T ss_pred HHHHHHHHHhhhhhhccccccccchhhccCCCcccccCCCCCCcCHHHHhhhhHHHHHhhhhccccCccEEeecCCHHHH
Confidence 12222211 1000000 0000000 0000000 0000 000000000000000 00111223345568999999
Q ss_pred HHHHHHhhhcccccccCCCceecCceeEEEEecCCcEEEEeCCC---cEEEeCEEEEeechhhccCCCccccCCCCHHHH
Q 013178 229 VHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVTVKTEDG---SVYQANYAIVSVSIGVLQSDFIEFTPNLPLWKK 305 (448)
Q Consensus 229 ~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~g---~~~~ad~VI~a~p~~~l~~~~~~~~p~l~~~~~ 305 (448)
+++|++.+. .++|++|++|++|+.++++|.|++.+| ++++||+||+|+|+.++++ +.+ ++|+.+.
T Consensus 242 ~~~l~~~l~--------~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~~~~ad~vI~a~p~~~l~~--l~~--~l~~~~~ 309 (489)
T 2jae_A 242 YYAFQDRIG--------TDNIVFGAEVTSMKNVSEGVTVEYTAGGSKKSITADYAICTIPPHLVGR--LQN--NLPGDVL 309 (489)
T ss_dssp HHHHHHHHC--------GGGEETTCEEEEEEEETTEEEEEEEETTEEEEEEESEEEECSCHHHHTT--SEE--CCCHHHH
T ss_pred HHHHHHhcC--------CCeEEECCEEEEEEEcCCeEEEEEecCCeEEEEECCEEEECCCHHHHHh--Ccc--CCCHHHH
Confidence 999999972 268999999999999999999988876 6799999999999999987 333 6899999
Q ss_pred HHHhhcCCcceeEEEEEcCCCCCCCCCC-cceEEEecccCCcccccccccccCCCCcEEE-EEecchhhhhhhcCChHHH
Q 013178 306 LAINNFNMAIYTKIFMKFPYKFWPTGPG-TEFFIYAHERRGYFPIWQHLENEMPGSNILF-VTVTDEESRRVERQSDEKT 383 (448)
Q Consensus 306 ~~~~~~~~~~~~~v~l~~~~~~w~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~a~~~~~~~~~e~ 383 (448)
+++++++|.++.|+++.|+++||++... .+.+.. .+..+..+|+++.......++|+ +++.++.+..|.+++++++
T Consensus 310 ~~l~~~~~~~~~kv~l~~~~~~w~~~~~~~g~~~~--~~~~~~~~~~~s~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~ 387 (489)
T 2jae_A 310 TALKAAKPSSSGKLGIEYSRRWWETEDRIYGGASN--TDKDISQIMFPYDHYNSDRGVVVAYYSSGKRQEAFESLTHRQR 387 (489)
T ss_dssp HHHHTEECCCEEEEEEEESSCHHHHTTCCCSCEEE--ESSTTCEEECCSSSTTSSCEEEEEEEEETHHHHHHHTSCHHHH
T ss_pred HHHHhCCCccceEEEEEeCCCCccCCCCccccccc--CCCCceEEEeCCCCCCCCCCEEEEEeeCCchhhhhhcCCHHHH
Confidence 9999999999999999999999975211 112222 22334445544322111235665 4778888888999999999
Q ss_pred HHHHHHHHHHHHhCC-CCCCCceEeeccCCCCCCCCcccCCCC------CCCCHHHHHHHhcccCceEEccC
Q 013178 384 KAEIMNNVLRKLFGN-KIPEPQSIFVPRWWSNRFFNGSYSNWP------NGFTQQSYKELKVSICKLHVGLT 448 (448)
Q Consensus 384 ~~~~~~~~L~~~~g~-~~~~~~~~~~~~W~~~~~~~g~~~~~~------~g~~~~~~~~~~~p~~~i~fAG~ 448 (448)
++.++ ++|+++||. ...++.....++|..+||+.|+|+.+. ||+....++.+++|.+||||||+
T Consensus 388 ~~~~l-~~L~~~~~~~~~~~~~~~~~~~W~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~faG~ 458 (489)
T 2jae_A 388 LAKAI-AEGSEIHGEKYTRDISSSFSGSWRRTKYSESAWANWAGSGGSHGGAATPEYEKLLEPVDKIYFAGD 458 (489)
T ss_dssp HHHHH-HHHHHHHCGGGGSSEEEEEEEEGGGSTTTSCSSCEETTC-------CCHHHHHHTSCBTTEEECSG
T ss_pred HHHHH-HHHHHHcCcchhhhccccEEEEcCCCCCCCCcchhcccccCCCcccchhhHHHHhCCCCcEEEeEH
Confidence 99999 999999975 334567778899999999999998877 88766778999999999999994
No 11
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Probab=100.00 E-value=2.8e-39 Score=316.70 Aligned_cols=379 Identities=18% Similarity=0.176 Sum_probs=247.8
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEEceeC---CceeeecceeccCCCCC-CCHHHHHHHHcC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNIG---GHTIELGANWVNSGGPK-SSPSLQIAKKIK 102 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~~~~---g~~~d~G~~~~~~~~~~-~~~~~~l~~~lg 102 (448)
++||+|||||++||+||+.|+++|+ +|+|||+++++||++.+...+ |..++.|+++++. . +..++++++++|
T Consensus 1 ~~dVvVIGaG~aGl~aA~~L~~~G~-~V~vlE~~~~~GG~~~t~~~~cipg~~~~~g~~~~~~---~~~~~~~~~~~~~g 76 (431)
T 3k7m_X 1 MYDAIVVGGGFSGLKAARDLTNAGK-KVLLLEGGERLGGRAYSRESRNVPGLRVEIGGAYLHR---KHHPRLAAELDRYG 76 (431)
T ss_dssp CEEEEEECCBHHHHHHHHHHHHTTC-CEEEECSSSSSBTTCCEEECSSSTTCEEESSCCCBCT---TTCHHHHHHHHHHT
T ss_pred CCCEEEECCcHHHHHHHHHHHHcCC-eEEEEecCCCccCeecceeccCCCCceEecCCeeeCC---CCcHHHHHHHHHhC
Confidence 3799999999999999999999999 799999999999999988766 9999999999988 5 788999999999
Q ss_pred CceeecccccccceEE-ecCCccc-----cHHHHHHHHHHHHHhHHHHHHHhhhccC--CCCCCCcccHHHHHHhhcCCC
Q 013178 103 LKTFYSDYANLTSNIY-KQDGGLY-----QKHVVESAVRIAKTRDAFCTNLSKMLSS--ETTRDDDTSILGSQRLLKEVP 174 (448)
Q Consensus 103 l~~~~~~~~~~~~~~~-~~~g~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 174 (448)
++........ ...+ ..+++.. +.............+......+...... ......+.+..++......
T Consensus 77 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~d~s~~~~l~~~~~-- 152 (431)
T 3k7m_X 77 IPTAAASEFT--SFRHRLGPTAVDQAFPIPGSEAVAVEAATYTLLRDAHRIDLEKGLENQDLEDLDIPLNEYVDKLDL-- 152 (431)
T ss_dssp CCEEECCCCC--EECCBSCTTCCSSSSCCCGGGHHHHHHHHHHHHHHHTTCCTTTCTTSSSCGGGCSBHHHHHHHHTC--
T ss_pred CeeeecCCCC--cEEEEecCCeecCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCccCcchhhhcCCHHHHHHhcCC--
Confidence 9865543221 1122 1122211 1112221111111111111111000000 0000011333333222111
Q ss_pred CChHHHHHHHHhhccccCCCcccccccccCCCcc-----cc--cCCCCeeeeeCCCchHHHHHHHHHhhhcccccccCCC
Q 013178 175 MTPLEMAIDYFFNDYEDAEPPRITSLKTTYPRNQ-----LV--DFGEDSYFVADPRGFESVVHSVAKQFLSHRHQVIRDP 247 (448)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~-----~~--~~~~~~~~~~~~~G~~~l~~~l~~~l~~~~~~~~~g~ 247 (448)
..........+.. ..++.++...+......... +. ...... .+.+|++.+++++++. .|
T Consensus 153 ~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~~~l~~~~~~~---------~g- 218 (431)
T 3k7m_X 153 PPVSRQFLLAWAW-NMLGQPADQASALWMLQLVAAHHYSILGVVLSLDE---VFSNGSADLVDAMSQE---------IP- 218 (431)
T ss_dssp CHHHHHHHHHHHH-HHHSSCTTTSBHHHHHHHHHHTTSCHHHHHHTCCE---EETTCTHHHHHHHHTT---------CS-
T ss_pred CHHHHHHHHHHHH-HhcCCChhhhhHHHHHHHHHhcCCccceeecchhh---hcCCcHHHHHHHHHhh---------CC-
Confidence 1111112211111 11333333333322211000 00 011111 3478999999999887 46
Q ss_pred ceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeechhhccCCCccccCCCCHHHHHHHhhcCCcceeEEEEEcCCCC
Q 013178 248 RLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSIGVLQSDFIEFTPNLPLWKKLAINNFNMAIYTKIFMKFPYKF 327 (448)
Q Consensus 248 ~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~p~l~~~~~~~~~~~~~~~~~~v~l~~~~~~ 327 (448)
+|++|++|++|+.++++|.|++.+|++++||+||+|+|++++++ +.|.|++|..+.++++.+.+....|+.+.|+++|
T Consensus 219 ~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vi~a~~~~~l~~--i~~~p~l~~~~~~~~~~~~~~~~~kv~~~~~~~~ 296 (431)
T 3k7m_X 219 EIRLQTVVTGIDQSGDVVNVTVKDGHAFQAHSVIVATPMNTWRR--IVFTPALPERRRSVIEEGHGGQGLKILIHVRGAE 296 (431)
T ss_dssp CEESSCCEEEEECSSSSEEEEETTSCCEEEEEEEECSCGGGGGG--SEEESCCCHHHHHHHHHCCCCCEEEEEEEEESCC
T ss_pred ceEeCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCcchHhh--eeeCCCCCHHHHHHHHhCCCcceEEEEEEECCCC
Confidence 99999999999999889999999997899999999999999987 6789999999999999999999999999999998
Q ss_pred CCCCCCcceEEEecccCCcccccccccccCCCCcEEEEEecchhhhhhhcCChHHHHHHHHHHHHHHHhCCCCCCCceEe
Q 013178 328 WPTGPGTEFFIYAHERRGYFPIWQHLENEMPGSNILFVTVTDEESRRVERQSDEKTKAEIMNNVLRKLFGNKIPEPQSIF 407 (448)
Q Consensus 328 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~e~~~~~~~~~L~~~~g~~~~~~~~~~ 407 (448)
|. ++ ...+... ..+........+..+|++++.++. +. ..+++ .+. +.|+++++. . .+.+..
T Consensus 297 ~~------i~--~~~d~~~-~~~~~~~~~~~~~~~l~~~~~g~~---~~-~~~~~---~~~-~~l~~~~~~-~-~~~~~~ 357 (431)
T 3k7m_X 297 AG------IE--CVGDGIF-PTLYDYCEVSESERLLVAFTDSGS---FD-PTDIG---AVK-DAVLYYLPE-V-EVLGID 357 (431)
T ss_dssp TT------EE--EEBSSSS-SEEEEEEECSSSEEEEEEEEETTT---CC-TTCHH---HHH-HHHHHHCTT-C-EEEEEE
T ss_pred cC------ce--EcCCCCE-EEEEeCcCCCCCCeEEEEEecccc---CC-CCCHH---HHH-HHHHHhcCC-C-CccEeE
Confidence 52 22 2222222 222222122234567888876654 32 23332 466 777788753 3 277788
Q ss_pred eccCCCCCCCCcccCCCCCCCCHHHHHHHhcccCceEEccC
Q 013178 408 VPRWWSNRFFNGSYSNWPNGFTQQSYKELKVSICKLHVGLT 448 (448)
Q Consensus 408 ~~~W~~~~~~~g~~~~~~~g~~~~~~~~~~~p~~~i~fAG~ 448 (448)
.++|..+||++|+|++++||+....++.+++|.+||||||+
T Consensus 358 ~~~W~~d~~~~G~~~~~~~g~~~~~~~~l~~p~g~~~fAGe 398 (431)
T 3k7m_X 358 YHDWIADPLFEGPWVAPRVGQFSRVHKELGEPAGRIHFVGS 398 (431)
T ss_dssp CCCTTTCTTTSSSSCCCCTTTTTTSSGGGGSCBTTEEECSG
T ss_pred ecccCCCCCCCCCCCCcCCCCCcccHHHHhCCCCcEEEEeh
Confidence 99999999999999999999987788999999999999994
No 12
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Probab=100.00 E-value=2.7e-37 Score=306.10 Aligned_cols=393 Identities=18% Similarity=0.208 Sum_probs=256.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcC------CCcEEEEecCCCCCceEEEceeCCceeeecceeccCCCCCCCHHHHHHH
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAG------YKDFIILEASSRVGGRLHKGNIGGHTIELGANWVNSGGPKSSPSLQIAK 99 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G------~~~V~vlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~l~~ 99 (448)
+++||+|||||++||+||++|+++| + +|+|||+++++||++.|...+|+.+|.|++++.. .++.+.++++
T Consensus 4 ~~~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~-~V~vlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~---~~~~~~~l~~ 79 (470)
T 3i6d_A 4 GKKHVVIIGGGITGLAAAFYMEKEIKEKNLPL-ELTLVEASPRVGGKIQTVKKDGYIIERGPDSFLE---RKKSAPQLVK 79 (470)
T ss_dssp -CEEEEEECCSHHHHHHHHHHHHHHTTTTCSE-EEEEECSSSSSCTTCCEECCTTCCEESSCCCEET---TCTHHHHHHH
T ss_pred CCCcEEEECCCHHHHHHHHHHHHhccccCCCC-CEEEEECCCCCCceEEEeccCCEEeccChhhhhh---CCHHHHHHHH
Confidence 3589999999999999999999999 8 8999999999999999999899999999999988 6889999999
Q ss_pred HcCCceeecccccccceEEecCCccccH--HH-------HHHHH-HHHHHhHHHHHHHhhhccCCCCCCCcccHHHHHHh
Q 013178 100 KIKLKTFYSDYANLTSNIYKQDGGLYQK--HV-------VESAV-RIAKTRDAFCTNLSKMLSSETTRDDDTSILGSQRL 169 (448)
Q Consensus 100 ~lgl~~~~~~~~~~~~~~~~~~g~~~~~--~~-------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (448)
++|+.............++. +|+.... .. ...+. ................+.......++.++.++.+.
T Consensus 80 ~lgl~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 158 (470)
T 3i6d_A 80 DLGLEHLLVNNATGQSYVLV-NRTLHPMPKGAVMGIPTKIAPFVSTGLFSLSGKARAAMDFILPASKTKDDQSLGEFFRR 158 (470)
T ss_dssp HTTCCTTEEECCCCCEEEEC-SSCEEECCC---------------------CCSHHHHHHHHSCCCSSSSCCBHHHHHHH
T ss_pred HcCCcceeecCCCCccEEEE-CCEEEECCCCcccCCcCchHHhhccCcCCHHHHHHHhcCcccCCCCCCCCcCHHHHHHH
Confidence 99998655422122223333 4543221 11 00000 00000000011111111111112245555554332
Q ss_pred hcCCCCChHHHHHHHHhhccccCCCcccccccccCCCccc-----cc------------------CCCCeeeeeCCCchH
Q 013178 170 LKEVPMTPLEMAIDYFFNDYEDAEPPRITSLKTTYPRNQL-----VD------------------FGEDSYFVADPRGFE 226 (448)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~-----~~------------------~~~~~~~~~~~~G~~ 226 (448)
. ......+.+...+.. ..++.+++..++...++.... .. ......+..+++|++
T Consensus 159 ~--~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 235 (470)
T 3i6d_A 159 R--VGDEVVENLIEPLLS-GIYAGDIDKLSLMSTFPQFYQTEQKHRSLILGMKKTRPQGSGQQLTAKKQGQFQTLSTGLQ 235 (470)
T ss_dssp H--SCHHHHHHTHHHHHH-HTTCSCTTTBBHHHHCGGGCC-------------------------------EEEETTCTH
T ss_pred h--cCHHHHHHhccchhc-EEecCCHHHhhHHHHHHHHHHHHHhcCcHHHHHHhhccccccccccccCCceEEEeCChHH
Confidence 1 111112222222211 124555555554332221100 00 000123455689999
Q ss_pred HHHHHHHHhhhcccccccCCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeechhhccCCCccccCCCCHHHHH
Q 013178 227 SVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSIGVLQSDFIEFTPNLPLWKKL 306 (448)
Q Consensus 227 ~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~p~l~~~~~~ 306 (448)
.++++|++.+. .++|++|++|++|+.+++++.|++.+|++++||+||+|+|+..+.+ +...|+ ..+
T Consensus 236 ~l~~~l~~~l~--------~~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~ad~vi~a~p~~~~~~--l~~~~~----~~~ 301 (470)
T 3i6d_A 236 TLVEEIEKQLK--------LTKVYKGTKVTKLSHSGSCYSLELDNGVTLDADSVIVTAPHKAAAG--MLSELP----AIS 301 (470)
T ss_dssp HHHHHHHHTCC--------SEEEECSCCEEEEEECSSSEEEEESSSCEEEESEEEECSCHHHHHH--HTTTST----THH
T ss_pred HHHHHHHHhcC--------CCEEEeCCceEEEEEcCCeEEEEECCCCEEECCEEEECCCHHHHHH--HcCCch----hhH
Confidence 99999999873 2689999999999999889999999998899999999999999876 333332 257
Q ss_pred HHhhcCCcceeEEEEEcCCCCCCCCCCcceEEEecc-cCCcc-ccccc--ccc-cCCCCcEEEEEecchhhhhhhcCChH
Q 013178 307 AINNFNMAIYTKIFMKFPYKFWPTGPGTEFFIYAHE-RRGYF-PIWQH--LEN-EMPGSNILFVTVTDEESRRVERQSDE 381 (448)
Q Consensus 307 ~~~~~~~~~~~~v~l~~~~~~w~~~~~~~~~~~~~~-~~~~~-~~~~~--~~~-~~~~~~~l~~~~~~~~a~~~~~~~~~ 381 (448)
+++++++.++.++++.|++++|+.......++.... ...+. .+|.+ .+. .+.+..+|.+++.+..++.+..++++
T Consensus 302 ~~~~~~~~~~~~v~l~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~s~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~ 381 (470)
T 3i6d_A 302 HLKNMHSTSVANVALGFPEGSVQMEHEGTGFVISRNSDFAITACTWTNKKWPHAAPEGKTLLRAYVGKAGDESIVDLSDN 381 (470)
T ss_dssp HHHTCEEEEEEEEEEEESSTTCCCSSCSSEEEECSTTCCSEEEEEEHHHHCGGGSCTTCEEEEEEECCSSCCGGGTSCHH
T ss_pred HHhcCCCCceEEEEEEECchhcCCCCCCeEEEccCCCCCCceEEEEEcCcCCCcCCCCCEEEEEEECCCCCccccCCCHH
Confidence 889999999999999999999986333323333321 11111 22322 112 23345677788877777778899999
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCceEeeccCCCCCCCCcccCCCCCCCCHH---HHHHHhcccCceEEccC
Q 013178 382 KTKAEIMNNVLRKLFGNKIPEPQSIFVPRWWSNRFFNGSYSNWPNGFTQQ---SYKELKVSICKLHVGLT 448 (448)
Q Consensus 382 e~~~~~~~~~L~~~~g~~~~~~~~~~~~~W~~~~~~~g~~~~~~~g~~~~---~~~~~~~p~~~i~fAG~ 448 (448)
++++.++ ++|+++||.. ++|....+++|. ++++.+.+|+... ..+.+.+|.+||+|||.
T Consensus 382 ~~~~~~~-~~l~~~~g~~-~~p~~~~~~~w~------~a~p~~~~g~~~~~~~~~~~l~~~~~~l~~aG~ 443 (470)
T 3i6d_A 382 DIINIVL-EDLKKVMNIN-GEPEMTCVTRWH------ESMPQYHVGHKQRIKELREALASAYPGVYMTGA 443 (470)
T ss_dssp HHHHHHH-HHHGGGSCCC-SCCSEEEEEEEE------EEEEECBTTHHHHHHHHHHHHHHHSTTEEECST
T ss_pred HHHHHHH-HHHHHHhCCC-CCceEEEEEEcC------CccCCCCCCHHHHHHHHHHHHHhhCCCEEEEee
Confidence 9999999 9999999863 578888999998 6777778886432 35667888899999995
No 13
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Probab=100.00 E-value=1.6e-36 Score=300.99 Aligned_cols=401 Identities=16% Similarity=0.155 Sum_probs=250.8
Q ss_pred cCCCCCCCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEEceeCCceeeecceeccCCCCCCCHHHHH
Q 013178 18 LVIAPTSPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNIGGHTIELGANWVNSGGPKSSPSLQI 97 (448)
Q Consensus 18 ~~~~~~~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~l 97 (448)
++..|+...++||+|||||++||+||+.|+++|+ +|+|||+++++|||+.|.+.+|+.+|.|++++.. .+..+.++
T Consensus 7 ~~~~~~~~~~~~v~iiG~G~~Gl~aa~~l~~~g~-~v~v~E~~~~~GGr~~t~~~~g~~~~~g~~~~~~---~~~~~~~~ 82 (478)
T 2ivd_A 7 HHHHMPRTTGMNVAVVGGGISGLAVAHHLRSRGT-DAVLLESSARLGGAVGTHALAGYLVEQGPNSFLD---REPATRAL 82 (478)
T ss_dssp ----------CCEEEECCBHHHHHHHHHHHTTTC-CEEEECSSSSSBTTCCEEEETTEEEESSCCCEET---TCHHHHHH
T ss_pred ccccCCCCCCCcEEEECCCHHHHHHHHHHHHCCC-CEEEEEcCCCCCceeeeeccCCeeeecChhhhhh---hhHHHHHH
Confidence 3456777889999999999999999999999999 7999999999999999999999999999999987 67889999
Q ss_pred HHHcCCceeecccc--cccceEEecCCccccHH-HHHHHHH-HHHHhHHHHHHHhhhccCCCCCCCcccHHHHHHhhcCC
Q 013178 98 AKKIKLKTFYSDYA--NLTSNIYKQDGGLYQKH-VVESAVR-IAKTRDAFCTNLSKMLSSETTRDDDTSILGSQRLLKEV 173 (448)
Q Consensus 98 ~~~lgl~~~~~~~~--~~~~~~~~~~g~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (448)
++++|+........ .....++. +|+.++.. ....+.. ...........+...+.......++.++.++.+-. +
T Consensus 83 ~~~~gl~~~~~~~~~~~~~~~~~~-~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~--~ 159 (478)
T 2ivd_A 83 AAALNLEGRIRAADPAAKRRYVYT-RGRLRSVPASPPAFLASDILPLGARLRVAGELFSRRAPEGVDESLAAFGRRH--L 159 (478)
T ss_dssp HHHTTCGGGEECSCSSCCCEEEEE-TTEEEECCCSHHHHHTCSSSCHHHHHHHHGGGGCCCCCTTCCCBHHHHHHHH--T
T ss_pred HHHcCCcceeeecCccccceEEEE-CCEEEECCCCHHHhccCCCCCHHHHHHHhhhhhcCCCCCCCCCCHHHHHHHh--h
Confidence 99999975433221 11223333 56543311 0111100 00000011111112222111012455665553321 1
Q ss_pred CCChHHHHHHHHhhccccCCCcccccccccCCCcc------------cc----------c-CCCC----eeeeeCCCchH
Q 013178 174 PMTPLEMAIDYFFNDYEDAEPPRITSLKTTYPRNQ------------LV----------D-FGED----SYFVADPRGFE 226 (448)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~------------~~----------~-~~~~----~~~~~~~~G~~ 226 (448)
.....+.+...+.. ..++.+++..|+...+.... .. . .... ..+..+++|++
T Consensus 160 ~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~ 238 (478)
T 2ivd_A 160 GHRATQVLLDAVQT-GIYAGDVEQLSVAATFPMLVKMEREHRSLILGAIRAQKAQRQAALPAGTAPKLSGALSTFDGGLQ 238 (478)
T ss_dssp CHHHHHHTHHHHHH-HHHCCCTTTBBHHHHCHHHHHHHHHHSSHHHHHHHHHHHHTCC----CCSCCCCCCEEEETTCTH
T ss_pred CHHHHHHHHHHHhc-eeecCCHHHhhHHHHhHHHHHHHHhcCcHHHHHHHhhhccccccCcccccccccccEEEECCCHH
Confidence 11111111111111 11344444444332211000 00 0 0001 23445689999
Q ss_pred HHHHHHHHhhhcccccccCCCceecCceeEEEEecCCcEEEEe---CCCcEEEeCEEEEeechhhccCCCccccCCCCHH
Q 013178 227 SVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVTVKT---EDGSVYQANYAIVSVSIGVLQSDFIEFTPNLPLW 303 (448)
Q Consensus 227 ~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~---~~g~~~~ad~VI~a~p~~~l~~~~~~~~p~l~~~ 303 (448)
.++++|++.+ |++|+++++|++|+.+++++.|.+ .+|++++||+||+|+|+..+.++ .|++|+.
T Consensus 239 ~l~~~l~~~l---------g~~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~ad~vV~a~~~~~~~~l----l~~l~~~ 305 (478)
T 2ivd_A 239 VLIDALAASL---------GDAAHVGARVEGLAREDGGWRLIIEEHGRRAELSVAQVVLAAPAHATAKL----LRPLDDA 305 (478)
T ss_dssp HHHHHHHHHH---------GGGEESSEEEEEEECC--CCEEEEEETTEEEEEECSEEEECSCHHHHHHH----HTTTCHH
T ss_pred HHHHHHHHHh---------hhhEEcCCEEEEEEecCCeEEEEEeecCCCceEEcCEEEECCCHHHHHHH----hhccCHH
Confidence 9999999996 568999999999999888888888 67778999999999999988752 2678988
Q ss_pred HHHHHhhcCCcceeEEEEEcCCCCCCCCCCcceEEEecccCCcc-cccccc--cc-cCCCCcEEEEEecchhhhhhhcCC
Q 013178 304 KKLAINNFNMAIYTKIFMKFPYKFWPTGPGTEFFIYAHERRGYF-PIWQHL--EN-EMPGSNILFVTVTDEESRRVERQS 379 (448)
Q Consensus 304 ~~~~~~~~~~~~~~~v~l~~~~~~w~~~~~~~~~~~~~~~~~~~-~~~~~~--~~-~~~~~~~l~~~~~~~~a~~~~~~~ 379 (448)
+.++++++++.++.++++.|++++|+......+++....+.... .+|.+. .. .+++..+|.+++.+..+..+.+++
T Consensus 306 ~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~l~~~~~~~~~~~~~~~~ 385 (478)
T 2ivd_A 306 LAALVAGIAYAPIAVVHLGFDAGTLPAPDGFGFLVPAEEQRRMLGAIHASTTFPFRAEGGRVLYSCMVGGARQPGLVEQD 385 (478)
T ss_dssp HHHHHHTCCBCCEEEEEEEECTTSSCCCCSSEEECCGGGCCSCCEEEEHHHHCGGGBSTTCEEEEEEEECTTCGGGGGSC
T ss_pred HHHHHhcCCCCcEEEEEEEEccccCCCCCceEEEecCCCCCceEEEEEEcccCCCcCCCCCEEEEEEeCCcCCccccCCC
Confidence 88999999999999999999999997521111221111122222 233221 11 233456777888777777788899
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCCCceEeeccCCCCCCCCcccCCCCCCCCHHH---HHHHhcccCceEEccC
Q 013178 380 DEKTKAEIMNNVLRKLFGNKIPEPQSIFVPRWWSNRFFNGSYSNWPNGFTQQS---YKELKVSICKLHVGLT 448 (448)
Q Consensus 380 ~~e~~~~~~~~~L~~~~g~~~~~~~~~~~~~W~~~~~~~g~~~~~~~g~~~~~---~~~~~~p~~~i~fAG~ 448 (448)
++++.+.++ ++|+++||.. .+|....+++|. ++++.+.+|+.... .+.+.. .+||||||.
T Consensus 386 ~~~~~~~~~-~~l~~~~~~~-~~p~~~~~~~w~------~~~p~~~~g~~~~~~~~~~~~~~-~~~l~~aG~ 448 (478)
T 2ivd_A 386 EDALAALAR-EELKALAGVT-ARPSFTRVFRWP------LGIPQYNLGHLERVAAIDAALQR-LPGLHLIGN 448 (478)
T ss_dssp HHHHHHHHH-HHHHHHHCCC-SCCSEEEEEEES------SCCBCCBTTHHHHHHHHHHHHHT-STTEEECST
T ss_pred HHHHHHHHH-HHHHHHhCCC-CCCcEEEEEECC------CcccCCCcCHHHHHHHHHHHHhh-CCCEEEEcc
Confidence 999999999 9999999764 467777889998 56777788874322 122333 589999995
No 14
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}
Probab=100.00 E-value=5.9e-35 Score=289.47 Aligned_cols=387 Identities=18% Similarity=0.207 Sum_probs=253.4
Q ss_pred CCcEEEECCChHHHHHHHHHHHcC--CCcEEEEecCCCCCceEEEceeCCceeeecceeccCCCCCCCHHHHHHHHcCCc
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAG--YKDFIILEASSRVGGRLHKGNIGGHTIELGANWVNSGGPKSSPSLQIAKKIKLK 104 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G--~~~V~vlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~l~~~lgl~ 104 (448)
++||+|||||++||+||++|+++| + +|+|||+++++||++.+...+|+.+|.|++++.. .+..+.++++++|+.
T Consensus 4 ~~~v~IiGaG~~Gl~~A~~L~~~g~~~-~v~v~E~~~~~GG~~~~~~~~g~~~~~g~~~~~~---~~~~~~~l~~~lg~~ 79 (475)
T 3lov_A 4 SKRLVIVGGGITGLAAAYYAERAFPDL-NITLLEAGERLGGKVATYREDGFTIERGPDSYVA---RKHILTDLIEAIGLG 79 (475)
T ss_dssp SCEEEEECCBHHHHHHHHHHHHHCTTS-EEEEECSSSSSBTTCCEECSTTCCEESSCCCEET---TSTHHHHHHHHTTCG
T ss_pred cccEEEECCCHHHHHHHHHHHHhCCCC-CEEEEECCCCCCceeEEEeeCCEEEecCchhhhc---ccHHHHHHHHHcCCc
Confidence 589999999999999999999999 8 8999999999999999999999999999999988 788999999999998
Q ss_pred eeecccccccceEEecCCccccHH--H-------HHHHH-----HHHHHhHHHHHHHhhhccC-CCCCCCcccHHHHHHh
Q 013178 105 TFYSDYANLTSNIYKQDGGLYQKH--V-------VESAV-----RIAKTRDAFCTNLSKMLSS-ETTRDDDTSILGSQRL 169 (448)
Q Consensus 105 ~~~~~~~~~~~~~~~~~g~~~~~~--~-------~~~~~-----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 169 (448)
............++. +|+....+ . ...+. ...... ... .+...... .....++.++.++.+-
T Consensus 80 ~~~~~~~~~~~~~~~-~g~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~l~~ 156 (475)
T 3lov_A 80 EKLVRNNTSQAFILD-TGGLHPIPKGAVMGIPTDLDLFRQTTLLTEEEKQ-EVA-DLLLHPSDSLRIPEQDIPLGEYLRP 156 (475)
T ss_dssp GGEEECCCCCEEEEE-TTEEEECCSSEETTEESCHHHHTTCSSSCHHHHH-HHH-HHHHSCCTTCCCCSSCCBHHHHHHH
T ss_pred ceEeecCCCceEEEE-CCEEEECCCcccccCcCchHHHhhccCCChhHHH-Hhh-CcccCCcccccCCCCCcCHHHHHHH
Confidence 665432122223333 44432210 0 01000 000000 011 11111111 0001134555544321
Q ss_pred hcCCCCChHHHHHHHHhhccccCCCcccccccccCCCcc--------cc------c------------CCCCeeeeeCCC
Q 013178 170 LKEVPMTPLEMAIDYFFNDYEDAEPPRITSLKTTYPRNQ--------LV------D------------FGEDSYFVADPR 223 (448)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~--------~~------~------------~~~~~~~~~~~~ 223 (448)
. ......+.+...+. ...++.+++..|+...++... +. . ......+..+++
T Consensus 157 ~--~~~~~~~~~~~~~~-~~~~~~~~~~ls~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (475)
T 3lov_A 157 R--LGDALVEKLIEPLL-SGIYAGNIDQMSTFATYPQFVANEQKAGSLFEGMRLMRPLDQLPQTPQTTIKATGQFLSLET 233 (475)
T ss_dssp H--HCHHHHHHTHHHHH-HGGGCCCTTTSBSTTTCHHHHHHHHHHSSHHHHHHHTCC--------------CCSEEEETT
T ss_pred H--hCHHHHHHHHHHHh-ceeecCChHHcCHHHHHHHHHHHHHhcCcHHHHHHHhcccccccccccccccCCCcEEeeCC
Confidence 1 11111112222221 123556666666554332110 00 0 001233456689
Q ss_pred chHHHHHHHHHhhhcccccccCCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeechhhccCCCccccCCCCHH
Q 013178 224 GFESVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSIGVLQSDFIEFTPNLPLW 303 (448)
Q Consensus 224 G~~~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~p~l~~~ 303 (448)
|++.++++|++.+. .++|++|++|++|+.+++++.|++.+| +++||+||+|+|+..+.+ +.+.+++
T Consensus 234 G~~~l~~~l~~~l~--------~~~i~~~~~V~~i~~~~~~~~v~~~~g-~~~ad~vV~a~p~~~~~~--ll~~~~~--- 299 (475)
T 3lov_A 234 GLESLIERLEEVLE--------RSEIRLETPLLAISREDGRYRLKTDHG-PEYADYVLLTIPHPQVVQ--LLPDAHL--- 299 (475)
T ss_dssp CHHHHHHHHHHHCS--------SCEEESSCCCCEEEEETTEEEEECTTC-CEEESEEEECSCHHHHHH--HCTTSCC---
T ss_pred hHHHHHHHHHhhcc--------CCEEEcCCeeeEEEEeCCEEEEEECCC-eEECCEEEECCCHHHHHH--HcCccCH---
Confidence 99999999999973 268999999999999998999999999 899999999999999877 3333433
Q ss_pred HHHHHhhcCCcceeEEEEEcCCCCCCCCCCcceEEEecc-cCCcc-cccccc--cccCCCCcEEEEEecchhhhhhhcCC
Q 013178 304 KKLAINNFNMAIYTKIFMKFPYKFWPTGPGTEFFIYAHE-RRGYF-PIWQHL--ENEMPGSNILFVTVTDEESRRVERQS 379 (448)
Q Consensus 304 ~~~~~~~~~~~~~~~v~l~~~~~~w~~~~~~~~~~~~~~-~~~~~-~~~~~~--~~~~~~~~~l~~~~~~~~a~~~~~~~ 379 (448)
+++++++|.++.++++.|+++++.. ..+..++.... ...+. ..|.+. +...|+..+|.+++.+..+..+..++
T Consensus 300 --~~~~~~~~~~~~~v~l~~~~~~~~~-~~g~g~l~~~~~~~~~~~~~~~s~~~~~~~p~~~~l~~~~~~~~~~~~~~~~ 376 (475)
T 3lov_A 300 --PELEQLTTHSTATVTMIFDQQQSLP-IEGTGFVVNRRAPYSITACTAIDQKWNHSAPDHTVLRAFVGRPGNDHLVHES 376 (475)
T ss_dssp --HHHHTCCEEEEEEEEEEEECCSSCS-SSSSEEEECTTSSCSEEEEEEHHHHCTTTCTTEEEEEEEECBTTBCGGGGSC
T ss_pred --HHHhcCCCCeEEEEEEEECCcCCCC-CCCEEEEecCCCCCceEEEEEEcccCCCCCCCcEEEEEEeCCCCCCcccCCC
Confidence 6788999999999999999998432 22222333322 11111 122221 12223345677777777777788899
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCCCceEeeccCCCCCCCCcccCCCCCCCCHH---HHHHHhcccCceEEccC
Q 013178 380 DEKTKAEIMNNVLRKLFGNKIPEPQSIFVPRWWSNRFFNGSYSNWPNGFTQQ---SYKELKVSICKLHVGLT 448 (448)
Q Consensus 380 ~~e~~~~~~~~~L~~~~g~~~~~~~~~~~~~W~~~~~~~g~~~~~~~g~~~~---~~~~~~~p~~~i~fAG~ 448 (448)
++++++.++ ++|+++||.. .+|....+++|. .+++.+.+|+... ..+.+++|.++|||||.
T Consensus 377 ~e~~~~~~~-~~L~~~~g~~-~~p~~~~v~~w~------~a~p~~~~g~~~~~~~~~~~l~~~~~~l~~aG~ 440 (475)
T 3lov_A 377 DEVLQQAVL-QDLEKICGRT-LEPKQVIISRLM------DGLPAYTVGHADRIQRVREEVLAQYPGIYLAGL 440 (475)
T ss_dssp HHHHHHHHH-HHHHHHHSSC-CCCSEEEEEEEE------EEEECCCTTHHHHHHHHHHHHHHHSTTEEECST
T ss_pred HHHHHHHHH-HHHHHHhCCC-CCCeEEEEEEcc------cCCCCCCCChHHHHHHHHHHHHhhCCCEEEEcc
Confidence 999999999 9999999864 478888999999 5667778887432 34667788899999994
No 15
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Probab=100.00 E-value=7.7e-36 Score=298.05 Aligned_cols=399 Identities=14% Similarity=0.158 Sum_probs=245.8
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEEceeCCceeeecceeccCCCCCCCHHHHHHHHcCC
Q 013178 24 SPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNIGGHTIELGANWVNSGGPKSSPSLQIAKKIKL 103 (448)
Q Consensus 24 ~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~l~~~lgl 103 (448)
+.+++||+|||||++||+||+.|+++|+ +|+|||+++++||++.+...+|+.+|.|+++++. .+..+.++++++|+
T Consensus 10 ~~~~~~v~iiG~G~~Gl~aA~~l~~~g~-~v~v~E~~~~~GG~~~~~~~~g~~~~~g~~~~~~---~~~~~~~~~~~lgl 85 (504)
T 1sez_A 10 HSSAKRVAVIGAGVSGLAAAYKLKIHGL-NVTVFEAEGKAGGKLRSVSQDGLIWDEGANTMTE---SEGDVTFLIDSLGL 85 (504)
T ss_dssp ---CCEEEEECCSHHHHHHHHHHHTTSC-EEEEECSSSSSCSSCCEEEETTEEEESSCCCBCC---CSHHHHHHHHHTTC
T ss_pred cCCCCeEEEECCCHHHHHHHHHHHHCCC-cEEEEEeCCCCCCceeeeccCCeEEecCCccccc---CcHHHHHHHHHcCC
Confidence 3457899999999999999999999999 8999999999999999999999999999999987 67889999999999
Q ss_pred ceeecccccccceEEecCCccccHH-HHHHHHH-----HHHHhHHHHHHHhhhccC-CCCCCCcccHHHHHHhhcCCCCC
Q 013178 104 KTFYSDYANLTSNIYKQDGGLYQKH-VVESAVR-----IAKTRDAFCTNLSKMLSS-ETTRDDDTSILGSQRLLKEVPMT 176 (448)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 176 (448)
..............+..+|+.++.. ....+.. ....+......+...... .....++.++.++.+-. +...
T Consensus 86 ~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~--~~~~ 163 (504)
T 1sez_A 86 REKQQFPLSQNKRYIARNGTPVLLPSNPIDLIKSNFLSTGSKLQMLLEPILWKNKKLSQVSDSHESVSGFFQRH--FGKE 163 (504)
T ss_dssp GGGEECCSSCCCEEEESSSSEEECCSSHHHHHHSSSSCHHHHHHHHTHHHHC----------CCCBHHHHHHHH--HCHH
T ss_pred cccceeccCCCceEEEECCeEEECCCCHHHHhccccCCHHHHHHHhHhhhccCcccccccCCCCccHHHHHHHH--cCHH
Confidence 7654322211122233466544311 0011100 000000001111111000 00011345555542211 1111
Q ss_pred hHHHHHHHHhhccccCCCcccccccccCCCc-----------------ccccC--------------CCCeeeeeCCCch
Q 013178 177 PLEMAIDYFFNDYEDAEPPRITSLKTTYPRN-----------------QLVDF--------------GEDSYFVADPRGF 225 (448)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~-----------------~~~~~--------------~~~~~~~~~~~G~ 225 (448)
..+.+...+.. ..++.+++..|+...++.. .+... ........+++|+
T Consensus 164 ~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~ 242 (504)
T 1sez_A 164 VVDYLIDPFVA-GTCGGDPDSLSMHHSFPELWNLEKRFGSVILGAIRSKLSPKNEKKQGPPKTSANKKRQRGSFSFLGGM 242 (504)
T ss_dssp HHHTTHHHHHH-HHHSCCGGGSBHHHHCHHHHHHHHHTSCHHHHHHHHTTC----------CCCSCCSTTCSCBEETTCT
T ss_pred HHHHHHHHHHc-cccCCChHHhhHHHHhHHHHHHHHHhCCHHHHHHHhhhcccccccccccchhhccccCCceEeeCcHH
Confidence 11111111111 1134445554443221100 00000 0011234558999
Q ss_pred HHHHHHHHHhhhcccccccCCCceecCceeEEEEecCCc------EEEEeC--CC---cEEEeCEEEEeechhhccCCCc
Q 013178 226 ESVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDK------VTVKTE--DG---SVYQANYAIVSVSIGVLQSDFI 294 (448)
Q Consensus 226 ~~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~------v~V~~~--~g---~~~~ad~VI~a~p~~~l~~~~~ 294 (448)
+.|+++|++.+. .++|++|++|++|+.++++ +.|++. +| ++++||+||+|+|+..+.+++.
T Consensus 243 ~~l~~~l~~~l~--------~~~i~~~~~V~~I~~~~~~~~~~~~~~v~~~~~~g~~~~~~~ad~VI~a~p~~~l~~ll~ 314 (504)
T 1sez_A 243 QTLTDAICKDLR--------EDELRLNSRVLELSCSCTEDSAIDSWSIISASPHKRQSEEESFDAVIMTAPLCDVKSMKI 314 (504)
T ss_dssp HHHHHHHHTTSC--------TTTEETTCCEEEEEEECSSSSSSCEEEEEEBCSSSSCBCCCEESEEEECSCHHHHHTSEE
T ss_pred HHHHHHHHhhcc--------cceEEcCCeEEEEEecCCCCcccceEEEEEcCCCCccceeEECCEEEECCCHHHHHHHhh
Confidence 999999999861 2689999999999988776 666654 45 5789999999999999987432
Q ss_pred c-ccCCCCHHHHHHHhhcCCcceeEEEEEcCCCCCCCCCCcceEEEeccc-----CCccccccc--ccc-cCCCCcEEEE
Q 013178 295 E-FTPNLPLWKKLAINNFNMAIYTKIFMKFPYKFWPTGPGTEFFIYAHER-----RGYFPIWQH--LEN-EMPGSNILFV 365 (448)
Q Consensus 295 ~-~~p~l~~~~~~~~~~~~~~~~~~v~l~~~~~~w~~~~~~~~~~~~~~~-----~~~~~~~~~--~~~-~~~~~~~l~~ 365 (448)
. ..+++++.. ++++++.++.++++.|++++|+....+..+.+...+ .....+|.+ .+. .+++..+|++
T Consensus 315 ~~~~~~~~~~~---l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~s~~~~~~~p~g~~~l~~ 391 (504)
T 1sez_A 315 AKRGNPFLLNF---IPEVDYVPLSVVITTFKRENVKYPLEGFGVLVPSKEQQHGLKTLGTLFSSMMFPDRAPNNVYLYTT 391 (504)
T ss_dssp ESSSSBCCCTT---SCCCCEEEEEEEEEEEEGGGBSSCCCSSEEECCGGGGGGTCCSSEEEEHHHHCGGGSCTTEEEEEE
T ss_pred cccCCcccHHH---HhcCCCCceEEEEEEEchhhcCCCCCceEEEcCCCCCCCCCccceEEeeccccCCcCCCCCEEEEE
Confidence 1 112344332 677888899999999999999864333233222211 111112221 112 2334456778
Q ss_pred EecchhhhhhhcCChHHHHHHHHHHHHHHHhCCCCCCCceEeeccCCCCCCCCcccCCCCCCCCHHH--HHHHhcccCce
Q 013178 366 TVTDEESRRVERQSDEKTKAEIMNNVLRKLFGNKIPEPQSIFVPRWWSNRFFNGSYSNWPNGFTQQS--YKELKVSICKL 443 (448)
Q Consensus 366 ~~~~~~a~~~~~~~~~e~~~~~~~~~L~~~~g~~~~~~~~~~~~~W~~~~~~~g~~~~~~~g~~~~~--~~~~~~p~~~i 443 (448)
++.+..+..+..++++|+++.++ ++|++++|.. .+|....+++|. .+++.+.+|+.... .+...+|.+||
T Consensus 392 ~~~g~~~~~~~~~~~ee~~~~v~-~~L~~~~g~~-~~p~~~~~~~w~------~~~p~~~~g~~~~~~~~~~~~~~~~~l 463 (504)
T 1sez_A 392 FVGGSRNRELAKASRTELKEIVT-SDLKQLLGAE-GEPTYVNHLYWS------KAFPLYGHNYDSVLDAIDKMEKNLPGL 463 (504)
T ss_dssp EEESTTCGGGTTCCHHHHHHHHH-HHHHHHHCBC-SCCSSEEEEEEE------EEEECCCTTHHHHHHHHHHHHHHSTTE
T ss_pred EeCCCCcccccCCCHHHHHHHHH-HHHHHHhCCC-CCCeEEEEeECC------CCCCccCcCHHHHHHHHHHHHHhCCCE
Confidence 88888777888899999999999 9999999763 357778899998 57777888864322 23456778999
Q ss_pred EEccC
Q 013178 444 HVGLT 448 (448)
Q Consensus 444 ~fAG~ 448 (448)
||||+
T Consensus 464 ~~aG~ 468 (504)
T 1sez_A 464 FYAGN 468 (504)
T ss_dssp EECCS
T ss_pred EEEee
Confidence 99995
No 16
>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*
Probab=100.00 E-value=7.5e-36 Score=300.31 Aligned_cols=221 Identities=14% Similarity=0.142 Sum_probs=159.4
Q ss_pred eeeeCCCchHHHHHHHHHhhhcccccccCCCceecCceeE--EEEecCCc-------EEE-EeCCCc--EEEeCEEEEee
Q 013178 217 YFVADPRGFESVVHSVAKQFLSHRHQVIRDPRLKLNKVVR--NISYSKDK-------VTV-KTEDGS--VYQANYAIVSV 284 (448)
Q Consensus 217 ~~~~~~~G~~~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~--~I~~~~~~-------v~V-~~~~g~--~~~ad~VI~a~ 284 (448)
.+..+.||++.|+++|++.+.. |..|+++++|+ +|.+++++ |+| .+.+|+ +++||+||+|+
T Consensus 338 ~~~~i~GG~~~L~~aLa~~l~~-------g~~I~l~~~V~~~~I~~~~~g~~~~~~~V~V~~~~~G~~~~~~aD~VIvTv 410 (721)
T 3ayj_A 338 EYTLPVTENVEFIRNLFLKAQN-------VGAGKLVVQVRQERVANACHSGTASARAQLLSYDSHNAVHSEAYDFVILAV 410 (721)
T ss_dssp EECCSSSSTHHHHHHHHHHHHH-------HTTTSEEEEEECEEEEEEEECSSSSCCEEEEEEETTCCEEEEEESEEEECS
T ss_pred ceeEECCcHHHHHHHHHHhccc-------CCceEeCCEEEeeeEEECCCCCccccceEEEEEecCCceEEEEcCEEEECC
Confidence 3456789999999999999632 56799999999 99987554 888 445676 79999999999
Q ss_pred chhhccC----CCcc-------c--------------cCC-C-C-------HHHHHHHhhcCCcceeEEEEEc-----CC
Q 013178 285 SIGVLQS----DFIE-------F--------------TPN-L-P-------LWKKLAINNFNMAIYTKIFMKF-----PY 325 (448)
Q Consensus 285 p~~~l~~----~~~~-------~--------------~p~-l-~-------~~~~~~~~~~~~~~~~~v~l~~-----~~ 325 (448)
|++++.. ..+. + .|+ | | ..+.+++++++|.++.|+++.| ++
T Consensus 411 P~~~L~~~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~pplLlp~~~~~~~~~~~~Ai~~l~~~~s~Kv~l~~~~~~~~~ 490 (721)
T 3ayj_A 411 PHDQLTPIVSRSGFEHAASQNLGDAGLGLETHTYNQVYPPLLLSDSSPAANARIVTAIGQLHMARSSKVFATVKTAALDQ 490 (721)
T ss_dssp CHHHHHHHHSSSCSSCEEEEEESCGGGTCCCEEEEEEBCSSCCCSSCHHHHHHHHHHHHTCCEECEEEEEEEEEGGGGGS
T ss_pred CHHHHhhccccccccccccccccccccccccccccccCCcccCCcccccccHHHHHHHHhcCcccceEEEEEEccccCCC
Confidence 9999842 1233 2 344 6 8 8899999999999999999999 99
Q ss_pred CCCCCCCCc-ceEEEecccCCcccccc-c--c--cccCCCCc-EEEEEecchhhhhh------hcCChHHH-------HH
Q 013178 326 KFWPTGPGT-EFFIYAHERRGYFPIWQ-H--L--ENEMPGSN-ILFVTVTDEESRRV------ERQSDEKT-------KA 385 (448)
Q Consensus 326 ~~w~~~~~~-~~~~~~~~~~~~~~~~~-~--~--~~~~~~~~-~l~~~~~~~~a~~~------~~~~~~e~-------~~ 385 (448)
+||++..+. ...++ .|.....+|+ + . +..+++.+ +|..|++++++..| ..++++|. ++
T Consensus 491 ~fW~~~~g~~i~~s~--TD~~~r~~~~~p~p~~~d~~~~~~gvlL~sYtwg~dA~~~~~~~g~~~~~~~er~~~~~~~~~ 568 (721)
T 3ayj_A 491 PWVPQWRGEPIKAVV--SDSGLAASYVVPSPIVEDGQAPEYSSLLASYTWEDDSTRLRHDFGLYPQNPATETGTADGMYR 568 (721)
T ss_dssp TTSCEETTEECCEEE--ETTTTEEEEEEECSCC----CCSEEEEEEEEEETHHHHHHHTTCCSSSEESSSSSCCCHHHHH
T ss_pred CcccccCCCCceeee--cCCCcceEEEeccCcccccCCCCCcEEEEEEeCccchhhhhccccccCCChHHhhhhhhHHHH
Confidence 999973111 11223 3334433333 1 1 12233344 56668899999888 66777677 99
Q ss_pred HHHHHHHH--HHhCCCC-------------CCCceEeeccCCCCCCCCcccCCCCCCCCHH---HHHH-----HhcccCc
Q 013178 386 EIMNNVLR--KLFGNKI-------------PEPQSIFVPRWWSNRFFNGSYSNWPNGFTQQ---SYKE-----LKVSICK 442 (448)
Q Consensus 386 ~~~~~~L~--~~~g~~~-------------~~~~~~~~~~W~~~~~~~g~~~~~~~g~~~~---~~~~-----~~~p~~~ 442 (448)
.++ ++|+ ++|+... ..+.+...++|.++| +.|+|..+.||+... +.+. +.+|.+|
T Consensus 569 ~~l-~~la~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~dW~~dp-s~Gaf~~~~pgq~~~~~l~~~~~~~~~~~~~~gr 646 (721)
T 3ayj_A 569 TMV-NRAYRYVKYAGASNAQPWWFYQLLAEARTADRFVFDWTTNK-TAGGFKLDMTGDHHQSNLCFRYHTHALAASLDNR 646 (721)
T ss_dssp HHH-HHTCCEECCTTCSSCEECHHHHHHHTSCSTTCEEEEGGGST-TSSSEECCBTTTHHHHHHHHHGGGGGGCTTTCCC
T ss_pred HHH-HHHhhhccCccccccccchhhhhhhhcccCceEEEeCCCCC-CCCccccCCCccchhhhhhhhhhhhccccCCCCC
Confidence 999 9999 8886422 113456899999999 999999999999321 1222 3567799
Q ss_pred eEEccC
Q 013178 443 LHVGLT 448 (448)
Q Consensus 443 i~fAG~ 448 (448)
|||||.
T Consensus 647 i~fAGe 652 (721)
T 3ayj_A 647 FFIASD 652 (721)
T ss_dssp EEECSG
T ss_pred EEEeeh
Confidence 999993
No 17
>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Probab=100.00 E-value=4e-34 Score=286.43 Aligned_cols=391 Identities=12% Similarity=0.041 Sum_probs=237.0
Q ss_pred CCCCCCCCcEEEECCChHHHHHHHHHHHc-CCCcEEEEecCCCCCceEEEc-eeCCceeeecceeccCCCCCCCHHHHHH
Q 013178 21 APTSPPSNSVIIVGAGMSGFMAAKTLEEA-GYKDFIILEASSRVGGRLHKG-NIGGHTIELGANWVNSGGPKSSPSLQIA 98 (448)
Q Consensus 21 ~~~~~~~~dViIIGaGiaGL~aA~~L~~~-G~~~V~vlE~~~~~GGr~~s~-~~~g~~~d~G~~~~~~~~~~~~~~~~l~ 98 (448)
+..+.+++||||||||+|||+||++|+++ |+ +|+|||+++++||+++|. ..+|+.+|.|+|+++. .++.+.+++
T Consensus 4 Ms~p~~~~DVvIIGaGisGLsaA~~L~k~~G~-~V~VlE~~~~~GG~~~T~~~~~G~~~D~G~h~~~~---~~~~v~~l~ 79 (513)
T 4gde_A 4 MTHPDISVDVLVIGAGPTGLGAAKRLNQIDGP-SWMIVDSNETPGGLASTDVTPEGFLYDVGGHVIFS---HYKYFDDCL 79 (513)
T ss_dssp --CCSEEEEEEEECCSHHHHHHHHHHHHHCCS-CEEEEESSSSCCGGGCEEECTTSCEEESSCCCCCC---CBHHHHHHH
T ss_pred CCCCCCCCCEEEECCcHHHHHHHHHHHhhCCC-CEEEEECCCCCcCCeeeEEecCCEEEEeCceEecC---CCHHHHHHH
Confidence 33445679999999999999999999985 99 799999999999999985 4679999999999998 788899999
Q ss_pred HHcCCceeecccccccceEEecCCccccHHHH---HH--HHHHHHHhHHHHHHHhhhccCCCCCCCcccHHHH--HHhhc
Q 013178 99 KKIKLKTFYSDYANLTSNIYKQDGGLYQKHVV---ES--AVRIAKTRDAFCTNLSKMLSSETTRDDDTSILGS--QRLLK 171 (448)
Q Consensus 99 ~~lgl~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 171 (448)
++++..............++. +|+.++.+.. .. ....................... +..++.++ .++.+
T Consensus 80 ~e~~~~~~~~~~~~~~~~i~~-~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~s~~~~~~~~~g~ 155 (513)
T 4gde_A 80 DEALPKEDDWYTHQRISYVRC-QGQWVPYPFQNNISMLPKEEQVKCIDGMIDAALEARVANT---KPKTFDEWIVRMMGT 155 (513)
T ss_dssp HHHSCSGGGEEEEECCEEEEE-TTEEEESSGGGGGGGSCHHHHHHHHHHHHHHHHHHHTCCS---CCCSHHHHHHHHHHH
T ss_pred HHhCCccceeEEecCceEEEE-CCeEeecchhhhhhhcchhhHHHHHHHHHHHHHhhhcccc---cccCHHHHHHHhhhh
Confidence 998764322111111123343 6665432110 00 00000111111111111111111 23334333 12211
Q ss_pred CCCCChHHHHHHHHhhccccCCCcccccccccCCCcc----------------cccCC-CCeeeeeCCCchHHHHHHHHH
Q 013178 172 EVPMTPLEMAIDYFFNDYEDAEPPRITSLKTTYPRNQ----------------LVDFG-EDSYFVADPRGFESVVHSVAK 234 (448)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~----------------~~~~~-~~~~~~~~~~G~~~l~~~l~~ 234 (448)
.+ .+.....+. ...++.+++..++..+..... ....+ ....+...++|++.++++|++
T Consensus 156 ~l----~~~~~~~~~-~~~~~~~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~ 230 (513)
T 4gde_A 156 GI----ADLFMRPYN-FKVWAVPTTKMQCAWLGERVAAPNLKAVTTNVILGKTAGNWGPNATFRFPARGGTGGIWIAVAN 230 (513)
T ss_dssp HH----HHHTHHHHH-HHHHSSCGGGBCSGGGCSSCCCCCHHHHHHHHHHTCCCCSCBTTBEEEEESSSHHHHHHHHHHH
T ss_pred hh----hhhhcchhh-hhhccCChHHhhHHHHHHhhcccchhhhhhhhhhcccccccccccceeecccCCHHHHHHHHHH
Confidence 10 111111110 011344455444433222110 01111 123344568999999999999
Q ss_pred hhhcccccccCCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeechhhccCCCccccCCCCHHHHHHHhhcCCc
Q 013178 235 QFLSHRHQVIRDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSIGVLQSDFIEFTPNLPLWKKLAINNFNMA 314 (448)
Q Consensus 235 ~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~p~l~~~~~~~~~~~~~~ 314 (448)
.+.+ .|++|++|++|++|..++++ |++.+|+++.||+||+|+|++.+.+++ + ++....+.+.++|.
T Consensus 231 ~l~~------~g~~i~~~~~V~~I~~~~~~--v~~~~G~~~~ad~vI~t~P~~~l~~~l----~--~~~~~~~~~~l~y~ 296 (513)
T 4gde_A 231 TLPK------EKTRFGEKGKVTKVNANNKT--VTLQDGTTIGYKKLVSTMAVDFLAEAM----N--DQELVGLTKQLFYS 296 (513)
T ss_dssp TSCG------GGEEESGGGCEEEEETTTTE--EEETTSCEEEEEEEEECSCHHHHHHHT----T--CHHHHHHHTTCCEE
T ss_pred HHHh------cCeeeecceEEEEEEccCCE--EEEcCCCEEECCEEEECCCHHHHHHhc----C--chhhHhhhhcccCC
Confidence 9977 58999999999999988765 456789999999999999999987632 1 34456777899999
Q ss_pred ceeEEEEEcCCCCCCCCCCcceEEEecccCCccccccc----------------------cc---ccCCCCcEEEEEecc
Q 013178 315 IYTKIFMKFPYKFWPTGPGTEFFIYAHERRGYFPIWQH----------------------LE---NEMPGSNILFVTVTD 369 (448)
Q Consensus 315 ~~~~v~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~---~~~~~~~~l~~~~~~ 369 (448)
++..+.+.++......-.+..++.+.+.+..+..+..+ .. ..+.+...+..++.+
T Consensus 297 ~~~~v~l~~~~~~~~~~~~~~~~y~~~~~~~f~Ri~~~~n~sp~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (513)
T 4gde_A 297 STHVIGVGVRGSRPERIGDKCWLYFPEDNCPFYRATIFSNYSPYNQPEASAALPTMQLADGSRPQSTEAKEGPYWSIMLE 376 (513)
T ss_dssp EEEEEEEEEESSCCTTTTTCCEEECCSTTCSCSEEECGGGTCGGGSCCTTCCEECCEETTSCCCSCCSEECCCEEEEEEE
T ss_pred ceEEEEEEEeccccccccccceeeccCCCCceeEEEecCCCCcccCCCCCceEEEEEeccCCCcccccCCcceEEEEEec
Confidence 99999999887654432222232222222222111110 00 011112233344433
Q ss_pred hhhhhhhcCChHHHHHHHHHHHHHHHhCCCC-CCCceEeeccCCCCCCCCcccCCCCCCCCHH---HHHHHhcccCceEE
Q 013178 370 EESRRVERQSDEKTKAEIMNNVLRKLFGNKI-PEPQSIFVPRWWSNRFFNGSYSNWPNGFTQQ---SYKELKVSICKLHV 445 (448)
Q Consensus 370 ~~a~~~~~~~~~e~~~~~~~~~L~~~~g~~~-~~~~~~~~~~W~~~~~~~g~~~~~~~g~~~~---~~~~~~~p~~~i~f 445 (448)
.....+..+++|++++.++ ++|.++.+... +++....+.||. .+|+.+.+|+... .++.+.. .+||+
T Consensus 377 ~~~~~~~~~~de~l~~~~~-~~L~~~~~i~~~~~i~~~~v~r~~------~ayP~y~~~~~~~~~~~~~~l~~--~~l~~ 447 (513)
T 4gde_A 377 VSESSMKPVNQETILADCI-QGLVNTEMLKPTDEIVSTYHRRFD------HGYPTPTLEREGTLTQILPKLQD--KDIWS 447 (513)
T ss_dssp EEEBTTBCCCTTTHHHHHH-HHHHHTTSSCTTCEEEEEEEEEEE------EEEECCBTTHHHHHHHHHHHHHH--TTEEE
T ss_pred ccchhccCCCHHHHHHHHH-HHHHHhcCCCCccceEEEEEEECC------CeecccCHhHHHHHHHHHHHHhh--cCcEE
Confidence 3334677899999999999 99999986543 346677889998 6899999987543 2344443 58999
Q ss_pred cc
Q 013178 446 GL 447 (448)
Q Consensus 446 AG 447 (448)
+|
T Consensus 448 ~G 449 (513)
T 4gde_A 448 RG 449 (513)
T ss_dssp CS
T ss_pred ec
Confidence 98
No 18
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}
Probab=100.00 E-value=2.7e-34 Score=285.00 Aligned_cols=397 Identities=16% Similarity=0.195 Sum_probs=247.2
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCC-cEEEEecCCCCCceEEEcee-CCceeeecceeccCCCCCCCHHHHHHHHcCCc
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYK-DFIILEASSRVGGRLHKGNI-GGHTIELGANWVNSGGPKSSPSLQIAKKIKLK 104 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~-~V~vlE~~~~~GGr~~s~~~-~g~~~d~G~~~~~~~~~~~~~~~~l~~~lgl~ 104 (448)
++||+|||||++||+||++|+++|+. +|+|||+++++||++.+... +|+.+|.|++++...++.+..+.++++++|+.
T Consensus 2 ~~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~~GG~~~t~~~~~g~~~d~G~~~~~~~~~~~~~~~~l~~~lgl~ 81 (477)
T 3nks_A 2 GRTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGGWIRSVRGPNGAIFELGPRGIRPAGALGARTLLLVSELGLD 81 (477)
T ss_dssp CCEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSSSBTTCCEEECTTSCEEESSCCCBCCCHHHHHHHHHHHHHTTCG
T ss_pred CceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCceEEEeccCCeEEEeCCCcccCCCcccHHHHHHHHHcCCc
Confidence 47999999999999999999999983 49999999999999999775 58999999999865111245678999999998
Q ss_pred eeecccc-----cccceEEecCCccccHHH-HHHHHHHHHHh--HHHHHHHhhhccCCCCCCCcccHHHHHHhhcCCCCC
Q 013178 105 TFYSDYA-----NLTSNIYKQDGGLYQKHV-VESAVRIAKTR--DAFCTNLSKMLSSETTRDDDTSILGSQRLLKEVPMT 176 (448)
Q Consensus 105 ~~~~~~~-----~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (448)
....... .....++. +|+..+.+. ..........+ ......+...+.... ..++.++.++.+-. +...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~-~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~--~g~~ 157 (477)
T 3nks_A 82 SEVLPVRGDHPAAQNRFLYV-GGALHALPTGLRGLLRPSPPFSKPLFWAGLRELTKPRG-KEPDETVHSFAQRR--LGPE 157 (477)
T ss_dssp GGEEEECTTSHHHHCEEEEE-TTEEEECCCSSCC---CCTTSCSCSSHHHHTTTTSCCC-CSSCCBHHHHHHHH--HCHH
T ss_pred ceeeecCCCCchhcceEEEE-CCEEEECCCChhhcccccchhhhHHHHHHHHhhhcCCC-CCCCcCHHHHHHHh--hCHH
Confidence 5443211 11122333 554332100 00000000000 000011111111111 12344554442211 0001
Q ss_pred hHHHHHHHHhhccccCCCcccccccccCCCcccc--cC--------------------------CCCeeeeeCCCchHHH
Q 013178 177 PLEMAIDYFFNDYEDAEPPRITSLKTTYPRNQLV--DF--------------------------GEDSYFVADPRGFESV 228 (448)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~--~~--------------------------~~~~~~~~~~~G~~~l 228 (448)
..+.+...+.. ..++.+++..|+..+++..... .+ .....+..+++|++.+
T Consensus 158 ~~~~~~~~~~~-~~~~~~~~~ls~~~~~~~l~~~e~~~gsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l 236 (477)
T 3nks_A 158 VASLAMDSLCR-GVFAGNSRELSIRSCFPSLFQAEQTHRSILLGLLLGAGRTPQPDSALIRQALAERWSQWSLRGGLEML 236 (477)
T ss_dssp HHHHTHHHHHH-HHHSSCTTTBBHHHHCHHHHHHHHHHSCHHHHHHHC-----CCCCHHHHHHHHTTCSEEEETTCTTHH
T ss_pred HHHHHHHHHhc-ccccCCHHHhhHHHHHHHHHHHHHHcCCHHHHHHHhcccccCCchhhhhhhcccCccEEEECCCHHHH
Confidence 11111111111 1244555555544432211000 00 0011244568999999
Q ss_pred HHHHHHhhhcccccccCCCceecCceeEEEEecCCc-EEEEeCCCcEEEeCEEEEeechhhccCCCccccCCCCHHHHHH
Q 013178 229 VHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDK-VTVKTEDGSVYQANYAIVSVSIGVLQSDFIEFTPNLPLWKKLA 307 (448)
Q Consensus 229 ~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~-v~V~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~p~l~~~~~~~ 307 (448)
+++|++.+.+ .|++|++|++|++|+.++++ +.|.+.++ +++||+||+|+|+..+.+++ |++++...+.
T Consensus 237 ~~~l~~~l~~------~g~~i~~~~~V~~i~~~~~~~~~v~~~~~-~~~ad~vv~a~p~~~~~~ll----~~~~~~~~~~ 305 (477)
T 3nks_A 237 PQALETHLTS------RGVSVLRGQPVCGLSLQAEGRWKVSLRDS-SLEADHVISAIPASVLSELL----PAEAAPLARA 305 (477)
T ss_dssp HHHHHHHHHH------TTCEEECSCCCCEEEECGGGCEEEECSSC-EEEESEEEECSCHHHHHHHS----CGGGHHHHHH
T ss_pred HHHHHHHHHh------cCCEEEeCCEEEEEEEcCCceEEEEECCe-EEEcCEEEECCCHHHHHHhc----cccCHHHHHH
Confidence 9999999977 58999999999999998777 88877544 89999999999999887632 4445667788
Q ss_pred HhhcCCcceeEEEEEcCCCCCCCCCCcceEEEecccCC-cccccccc--c--ccCCCCcEEEEEecchhhhhhh----cC
Q 013178 308 INNFNMAIYTKIFMKFPYKFWPTGPGTEFFIYAHERRG-YFPIWQHL--E--NEMPGSNILFVTVTDEESRRVE----RQ 378 (448)
Q Consensus 308 ~~~~~~~~~~~v~l~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~--~--~~~~~~~~l~~~~~~~~a~~~~----~~ 378 (448)
+.+++|.++.++++.|++++|+. ....+++...++.. ...+|.+. . ..+++..+|.+++.+..+..+. .+
T Consensus 306 l~~~~~~~~~~v~l~~~~~~~~~-~~~g~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~l~~~~gg~~~~~~~~~~~~~ 384 (477)
T 3nks_A 306 LSAITAVSVAVVNLQYQGAHLPV-QGFGHLVPSSEDPGVLGIVYDSVAFPEQDGSPPGLRVTVMLGGSWLQTLEASGCVL 384 (477)
T ss_dssp HHTCCEEEEEEEEEEETTCCCSS-CSSEEECCTTTCSSEEEEECHHHHCGGGSTTTTCEEEEEEECHHHHHHHHHSSCCC
T ss_pred HhcCCCCcEEEEEEEECCCCCCC-CCceEEccCCCCCCceEEEEeccccCCCCCCCCceEEEEEECCccccccccccCCC
Confidence 89999999999999999999964 12233322111211 12233221 1 1134567788888777665553 46
Q ss_pred ChHHHHHHHHHHHHHHHhCCCCCCCceEeeccCCCCCCCCcccCCCCCCCCHHH---HHHHhcccCceEEccC
Q 013178 379 SDEKTKAEIMNNVLRKLFGNKIPEPQSIFVPRWWSNRFFNGSYSNWPNGFTQQS---YKELKVSICKLHVGLT 448 (448)
Q Consensus 379 ~~~e~~~~~~~~~L~~~~g~~~~~~~~~~~~~W~~~~~~~g~~~~~~~g~~~~~---~~~~~~p~~~i~fAG~ 448 (448)
+++++++.++ ++|++++|.. +++....+++|. .+++.+.+|+.... ...+.+..++|+|||.
T Consensus 385 ~~~~~~~~~~-~~L~~~~g~~-~~~~~~~v~rw~------~a~p~~~~g~~~~~~~~~~~l~~~~~~l~l~G~ 449 (477)
T 3nks_A 385 SQELFQQRAQ-EAAATQLGLK-EMPSHCLVHLHK------NCIPQYTLGHWQKLESARQFLTAHRLPLTLAGA 449 (477)
T ss_dssp CHHHHHHHHH-HHHHHHHCCC-SCCSEEEEEEEE------EEEECCBTTHHHHHHHHHHHHHHTTCSEEECST
T ss_pred CHHHHHHHHH-HHHHHHhCCC-CCCcEEEEEEcC------CccCCCCCCHHHHHHHHHHHHHhcCCCEEEEcc
Confidence 9999999999 9999999863 567788999999 68999999975432 2233334468999984
No 19
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Probab=100.00 E-value=1.2e-31 Score=262.00 Aligned_cols=382 Identities=12% Similarity=0.076 Sum_probs=235.5
Q ss_pred CcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEEceeCCceeeecceeccCCCCCCCHHHHHHHHcCCceee
Q 013178 28 NSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNIGGHTIELGANWVNSGGPKSSPSLQIAKKIKLKTFY 107 (448)
Q Consensus 28 ~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~l~~~lgl~~~~ 107 (448)
+||+|||||++||+||++|+++|+ +|+|||+++++||++.++..+|+.+|.|++++... .....+.++++++|+....
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~~G~-~V~vlE~~~~~GG~~~~~~~~G~~~d~G~~~~~~~-~~~~~~~~l~~~lg~~~~~ 78 (425)
T 3ka7_A 1 MKTVVIGAGLGGLLSAARLSKAGH-EVEVFERLPITGGRFTNLSYKGFQLSSGAFHMLPN-GPGGPLACFLKEVEASVNI 78 (425)
T ss_dssp CEEEEECCBHHHHHHHHHHHHTTC-EEEEECSSSSSBTTSSEEEETTEEEESSSCSCBTT-GGGSHHHHHHHHTTCCCCE
T ss_pred CcEEEECCCHHHHHHHHHHHhCCC-ceEEEeCCCCCCCceeeeccCCcEEcCCCceEecC-CCccHHHHHHHHhCCCceE
Confidence 589999999999999999999999 89999999999999999999999999998665431 2456789999999987654
Q ss_pred cccccccceEEe-c--------CCccccHHHHHHHHHHHHHhHHHHHHHhhhccCCCCCCCcccHHHHHHhhcCCCCChH
Q 013178 108 SDYANLTSNIYK-Q--------DGGLYQKHVVESAVRIAKTRDAFCTNLSKMLSSETTRDDDTSILGSQRLLKEVPMTPL 178 (448)
Q Consensus 108 ~~~~~~~~~~~~-~--------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (448)
...... ...+. . .++.+............. .......+. .... . ..++.++.++.+-. ......
T Consensus 79 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~-~-~~~~~s~~~~l~~~--~~~~~~ 151 (425)
T 3ka7_A 79 VRSEMT-TVRVPLKKGNPDYVKGFKDISFNDFPSLLSYKD-RMKIALLIV-STRK-N-RPSGSSLQAWIKSQ--VSDEWL 151 (425)
T ss_dssp EECCCC-EEEEESSTTCCSSTTCEEEEEGGGGGGGSCHHH-HHHHHHHHH-HTTT-S-CCCSSBHHHHHHHH--CCCHHH
T ss_pred EecCCc-eEEeecCCCcccccccccceehhhhhhhCCHHH-HHHHHHHHH-hhhh-c-CCCCCCHHHHHHHh--cCCHHH
Confidence 332211 11111 0 122222111100000000 000001110 0110 1 11345555543322 222222
Q ss_pred HHHHHHHhhccccCCCcccccccccCCCccc-ccCCCCeeeeeCCCchHHHHHHHHHhhhcccccccCCCceecCceeEE
Q 013178 179 EMAIDYFFNDYEDAEPPRITSLKTTYPRNQL-VDFGEDSYFVADPRGFESVVHSVAKQFLSHRHQVIRDPRLKLNKVVRN 257 (448)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~-~~~~~~~~~~~~~~G~~~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~ 257 (448)
+.+...+.. ..++.+++..++...+..... ...+. ...+.+|++.++++|++.+.+ .|++|++|++|++
T Consensus 152 ~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~---~~~~~gG~~~l~~~l~~~~~~------~G~~i~~~~~V~~ 221 (425)
T 3ka7_A 152 IKFADSFCG-WALSLKSDEVPVEEVFEIIENMYRFGG---TGIPEGGCKGIIDALETVISA------NGGKIHTGQEVSK 221 (425)
T ss_dssp HHHHHHHHH-HHHSSCGGGSBHHHHHHHHHHHHHHCS---CEEETTSHHHHHHHHHHHHHH------TTCEEECSCCEEE
T ss_pred HHHHHHHHH-HHhCCCcccchHHHHHHHHHHHHhcCC---ccccCCCHHHHHHHHHHHHHH------cCCEEEECCceeE
Confidence 222222211 113445555554322211111 11111 123489999999999999987 6999999999999
Q ss_pred EEecCCcEE-EEeCCCcEEEeCEEEEeechhhccCCCccccCCC--CHHHHHHHhhcCCcceeEEEEEcCCCCCCCCCCc
Q 013178 258 ISYSKDKVT-VKTEDGSVYQANYAIVSVSIGVLQSDFIEFTPNL--PLWKKLAINNFNMAIYTKIFMKFPYKFWPTGPGT 334 (448)
Q Consensus 258 I~~~~~~v~-V~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~p~l--~~~~~~~~~~~~~~~~~~v~l~~~~~~w~~~~~~ 334 (448)
|..+++++. |.+. |++++||+||+|+|+..+.+++ ...+.+ ++...+.++++++.+..++++.|++++|..
T Consensus 222 i~~~~~~~~gv~~~-g~~~~ad~VV~a~~~~~~~~ll-~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~---- 295 (425)
T 3ka7_A 222 ILIENGKAAGIIAD-DRIHDADLVISNLGHAATAVLC-SEALSKEADAAYFKMVGTLQPSAGIKICLAADEPLVGH---- 295 (425)
T ss_dssp EEEETTEEEEEEET-TEEEECSEEEECSCHHHHHHHT-TTTCCTTTTHHHHHHHHHCCCBEEEEEEEEESSCSSCS----
T ss_pred EEEECCEEEEEEEC-CEEEECCEEEECCCHHHHHHhc-CCcccccCCHHHHHHhhCcCCCceEEEEeecCCCccCc----
Confidence 999988876 7664 7789999999999998887632 222233 777788889999999999999999988753
Q ss_pred ceEEEecccCCcc-cccc---cccccCCCCcEEEEEecchhhhhhhcCChHHHHHHHHHHHHHHHhCCCCCCCceEeecc
Q 013178 335 EFFIYAHERRGYF-PIWQ---HLENEMPGSNILFVTVTDEESRRVERQSDEKTKAEIMNNVLRKLFGNKIPEPQSIFVPR 410 (448)
Q Consensus 335 ~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~e~~~~~~~~~L~~~~g~~~~~~~~~~~~~ 410 (448)
..+++..+...+. .++. +....+++..++.++....+ ...+.+ ++.++.++ ++|++++|.. ++....+++
T Consensus 296 ~~~~~~~~~~~~~~~~~~s~~~p~~ap~G~~~l~~~~~~~~--~~~~~~-~~~~~~~~-~~l~~~~p~~--~~~~~~v~~ 369 (425)
T 3ka7_A 296 TGVLLTPYTRRINGVNEVTQADPELAPPGKHLTMCHQYVAP--ENVKNL-ESEIEMGL-EDLKEIFPGK--RYEVLLIQS 369 (425)
T ss_dssp SSEEECCSSSSEEEEECGGGTCGGGSCTTCEEEEEEEEECG--GGGGGH-HHHHHHHH-HHHHHHSTTC--CEEEEEEEE
T ss_pred CEEEECCChhhcceEEeccCCCCCcCCCCCeEEEEEecccc--ccccch-HHHHHHHH-HHHHHhCCCC--ceEEEEEEE
Confidence 2223332221111 1111 12234456666666554322 111222 45579999 9999999652 344457888
Q ss_pred CCCCCCCCcccCCCCCCCCHHHHHHHhcccCceEEccC
Q 013178 411 WWSNRFFNGSYSNWPNGFTQQSYKELKVSICKLHVGLT 448 (448)
Q Consensus 411 W~~~~~~~g~~~~~~~g~~~~~~~~~~~p~~~i~fAG~ 448 (448)
|. ++++.+++|+. .++....|.+|||+||.
T Consensus 370 ~~------~~~P~~~~~~~--~~~~~~~p~~gL~laG~ 399 (425)
T 3ka7_A 370 YH------DEWPVNRAASG--TDPGNETPFSGLYVVGD 399 (425)
T ss_dssp EB------TTBCSBSSCTT--CCCCSBCSSBTEEECST
T ss_pred EC------CCccccccccC--CCCCCCCCcCCeEEeCC
Confidence 98 67888888853 34666778899999995
No 20
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*
Probab=99.97 E-value=3.1e-30 Score=254.68 Aligned_cols=383 Identities=14% Similarity=0.069 Sum_probs=235.7
Q ss_pred CCCCCCCcEEEECCChHHHHHHHHHHHcC-CCcEEEEecCCCCCceEEEc-eeCCceeeecceeccCCCCCCCHHHHHHH
Q 013178 22 PTSPPSNSVIIVGAGMSGFMAAKTLEEAG-YKDFIILEASSRVGGRLHKG-NIGGHTIELGANWVNSGGPKSSPSLQIAK 99 (448)
Q Consensus 22 ~~~~~~~dViIIGaGiaGL~aA~~L~~~G-~~~V~vlE~~~~~GGr~~s~-~~~g~~~d~G~~~~~~~~~~~~~~~~l~~ 99 (448)
|.+.+++||+|||||++||+||++|+++| . +|+|||+++++||++.+. ..+|+.+|.|++++.. ....+.++++
T Consensus 4 m~~~~~~~v~iiG~G~~Gl~~A~~l~~~g~~-~v~v~E~~~~~GG~~~~~~~~~g~~~~~g~~~~~~---~~~~~~~l~~ 79 (484)
T 4dsg_A 4 MAELLTPKIVIIGAGPTGLGAAVRLTELGYK-NWHLYECNDTPGGLSRSFLDENGFTWDLGGHVIFS---HYQYFDDVMD 79 (484)
T ss_dssp ---CCSCCEEEECCSHHHHHHHHHHHHTTCC-SEEEEESSSSSSGGGCEEECTTSCEEESSCCCBCC---SBHHHHHHHH
T ss_pred CCcccCCCEEEECcCHHHHHHHHHHHHcCCC-CEEEEeCCCCCCCeeeeeecCCCcEEeeCCccccc---ChHHHHHHHH
Confidence 33456799999999999999999999998 7 799999999999999995 6789999999999987 6777889999
Q ss_pred HcCCceeecccccccceEEecCCccccHH--H-H-----HHHHHHHHHhHHHHHHHhhhccCCCCCCCcccHHHHH--Hh
Q 013178 100 KIKLKTFYSDYANLTSNIYKQDGGLYQKH--V-V-----ESAVRIAKTRDAFCTNLSKMLSSETTRDDDTSILGSQ--RL 169 (448)
Q Consensus 100 ~lgl~~~~~~~~~~~~~~~~~~g~~~~~~--~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 169 (448)
++. .. ..... ....++. +|+.++.+ . + ......+ ....... ... . ..++.++.++. ++
T Consensus 80 ~~~-~~-~~~~~-~~~~~~~-~g~~~~~P~~~~~~~l~~~~~~~~~---~~ll~~~-~~~-~---~~~~~s~~e~~~~~~ 147 (484)
T 4dsg_A 80 WAV-QG-WNVLQ-RESWVWV-RGRWVPYPFQNNIHRLPEQDRKRCL---DELVRSH-ART-Y---TEPPNNFEESFTRQF 147 (484)
T ss_dssp HHC-SC-EEEEE-CCCEEEE-TTEEEESSGGGCGGGSCHHHHHHHH---HHHHHHH-HCC-C---SSCCSSHHHHHHHHH
T ss_pred HHh-hh-hhhcc-CceEEEE-CCEEEEeCccchhhhCCHHHHHHHH---HHHHHHH-hcc-C---CCCCCCHHHHHHHHh
Confidence 875 21 11111 1122333 56554321 0 0 0011111 1111110 011 1 11344555442 22
Q ss_pred hcCCCCChHHHHHHHHhhccccCCCcccccccccCCCccc-----------c-----cCCCCeee-eeCCCchHHHHHHH
Q 013178 170 LKEVPMTPLEMAIDYFFNDYEDAEPPRITSLKTTYPRNQL-----------V-----DFGEDSYF-VADPRGFESVVHSV 232 (448)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~-----------~-----~~~~~~~~-~~~~~G~~~l~~~l 232 (448)
...+.+...+....- .++.+++.+|+..+...... . ..+....+ +...+|++.++++|
T Consensus 148 g~~~~~~~~~p~~~~-----v~~~~~~~ls~~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~f~yp~~gG~~~l~~~l 222 (484)
T 4dsg_A 148 GEGIADIFMRPYNFK-----VWAVPPCLMSTEWVEERVAPVDLERIRRNIQENRDDLGWGPNATFRFPQRGGTGIIYQAI 222 (484)
T ss_dssp HHHHCCCCCHHHHHH-----HHSSCGGGBCSSSCTTTSCCCCHHHHHHHHHHTCCCCCCSTTSEEEEESSSCTHHHHHHH
T ss_pred HHHHHHHHHHHHHhh-----hcCCCHHHhcHHHHhccccCCCHHHHHHHHhhcccccCCCccceEEeecCCCHHHHHHHH
Confidence 222222222222111 14556666665443322111 0 01112222 33468999999999
Q ss_pred HHhhhcccccccCCCceecC--ceeEEEEecCCcEEEEeCCCcEEEeCEEEEeechhhccCCCccccCCCCHHHHHHHhh
Q 013178 233 AKQFLSHRHQVIRDPRLKLN--KVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSIGVLQSDFIEFTPNLPLWKKLAINN 310 (448)
Q Consensus 233 ~~~l~~~~~~~~~g~~i~~~--~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~p~l~~~~~~~~~~ 310 (448)
++.+.+ .+|+++ ++|++|+.++++|. +.+|++++||+||+|+|+..+.+++....+++|+...+++++
T Consensus 223 a~~l~~--------~~i~~~~~~~V~~I~~~~~~v~--~~~G~~~~ad~VI~a~p~~~~~~ll~~~~~~~~~~~~~~l~~ 292 (484)
T 4dsg_A 223 KEKLPS--------EKLTFNSGFQAIAIDADAKTIT--FSNGEVVSYDYLISTVPFDNLLRMTKGTGFKGYDEWPAIADK 292 (484)
T ss_dssp HHHSCG--------GGEEECGGGCEEEEETTTTEEE--ETTSCEEECSEEEECSCHHHHHHHEECSSCTTGGGHHHHHHH
T ss_pred Hhhhhh--------CeEEECCCceeEEEEecCCEEE--ECCCCEEECCEEEECCCHHHHHHHhhccCCCCCHHHHHHHhC
Confidence 999742 279999 56999999887654 478889999999999999988763222234578888889999
Q ss_pred cCCcceeEEEEEcCCCCCCCCCCcceEEEecccCCccc--ccccc--cccCCCCcEEEEEecchhhhhhhcCChHHHHHH
Q 013178 311 FNMAIYTKIFMKFPYKFWPTGPGTEFFIYAHERRGYFP--IWQHL--ENEMPGSNILFVTVTDEESRRVERQSDEKTKAE 386 (448)
Q Consensus 311 ~~~~~~~~v~l~~~~~~w~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~l~~~~~~~~a~~~~~~~~~e~~~~ 386 (448)
++|.++.++.+.|+.+...+-.+..++.+.+.+..+.. .+... ...+++..+++..+... ....++++|+++.
T Consensus 293 l~y~s~~~v~l~~~~~~~~~~~~~~~i~vp~~~~~~~ri~~~s~~~p~~ap~g~~~l~~e~~~~---~~~~~~d~~l~~~ 369 (484)
T 4dsg_A 293 MVYSSTNVIGIGVKGTPPPHLKTACWLYFPEDTSPFYRATVFSNYSKYNVPEGHWSLMLEVSES---KYKPVNHSTLIED 369 (484)
T ss_dssp CCEEEEEEEEEEEESCCCGGGTTCCEEECCSTTCSCSEEECGGGTCGGGSCTTEEEEEEEEEEB---TTBCCCTTSHHHH
T ss_pred CCcCceEEEEEEEcCCCcccCCCCeEEEEEcCCCeEEEEEeecCCCcccCCCCeEEEEEEEecC---cCCcCCHHHHHHH
Confidence 99999999999998863221012223332322222211 11111 12233444555555432 3446899999999
Q ss_pred HHHHHHHHHhCCCCCCC-ceEeeccCCCCCCCCcccCCCCCCCCHHH---HHHHhcccCceEEcc
Q 013178 387 IMNNVLRKLFGNKIPEP-QSIFVPRWWSNRFFNGSYSNWPNGFTQQS---YKELKVSICKLHVGL 447 (448)
Q Consensus 387 ~~~~~L~~~~g~~~~~~-~~~~~~~W~~~~~~~g~~~~~~~g~~~~~---~~~~~~p~~~i~fAG 447 (448)
++ ++|.++.+....++ ....+++|. .+|+.+.+|+.... ++.+.+ . +|+|+|
T Consensus 370 a~-~~L~~~~~~~~~~~~~~~~v~r~~------~~yP~y~~~~~~~~~~~~~~l~~-~-~l~~~G 425 (484)
T 4dsg_A 370 CI-VGCLASNLLLPEDLLVSKWHYRIE------KGYPTPFIGRNNLLEKAQPELMS-R-CIYSRG 425 (484)
T ss_dssp HH-HHHHHTTSCCTTCCEEEEEEEEEE------EEEECCBTTHHHHHHHHHHHHHH-T-TEEECS
T ss_pred HH-HHHHHcCCCCccceEEEEEEEEeC------ccccCCCccHHHHHHHHHHHHHh-C-CcEeec
Confidence 99 99999865432233 345788999 89999999975432 333433 3 899998
No 21
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}
Probab=99.97 E-value=3.6e-30 Score=243.97 Aligned_cols=207 Identities=13% Similarity=0.103 Sum_probs=151.9
Q ss_pred eCCCchHHHHHHHHHhhhcccccccCCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeechhhccCCCccccCC
Q 013178 220 ADPRGFESVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSIGVLQSDFIEFTPN 299 (448)
Q Consensus 220 ~~~~G~~~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~p~ 299 (448)
...+|++.++++|++.+ |++|+++++|++|+.+++++.|.+.+|++++||+||+|+|++.+.+++..+.|.
T Consensus 106 ~~~~g~~~l~~~l~~~~---------g~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~ad~vV~A~p~~~~~~ll~~~~~~ 176 (342)
T 3qj4_A 106 VAPQGISSIIKHYLKES---------GAEVYFRHRVTQINLRDDKWEVSKQTGSPEQFDLIVLTMPVPEILQLQGDITTL 176 (342)
T ss_dssp ECTTCTTHHHHHHHHHH---------TCEEESSCCEEEEEECSSSEEEEESSSCCEEESEEEECSCHHHHTTCBSTHHHH
T ss_pred ecCCCHHHHHHHHHHhc---------CCEEEeCCEEEEEEEcCCEEEEEECCCCEEEcCEEEECCCHHHHHHHhcccccc
Confidence 34789999999999985 789999999999999998999999999779999999999999888755445567
Q ss_pred CCHHHHHHHhhcCCcceeEEEEEcCCCCCCCCCCcceEEEecccCCccccccc-ccc--c-CCCCcEEEEEecchhhhhh
Q 013178 300 LPLWKKLAINNFNMAIYTKIFMKFPYKFWPTGPGTEFFIYAHERRGYFPIWQH-LEN--E-MPGSNILFVTVTDEESRRV 375 (448)
Q Consensus 300 l~~~~~~~~~~~~~~~~~~v~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~-~~~~~~l~~~~~~~~a~~~ 375 (448)
||+...+.+++++|.++.++++.|+++||.+.+...+++ . .+..+..++.. ... . +++..++++...+..++.+
T Consensus 177 l~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~g~~~-~-~~~~~~~~~~~~~k~~r~~~~~~~~~v~~~~~~~~~~~ 254 (342)
T 3qj4_A 177 ISECQRQQLEAVSYSSRYALGLFYEAGTKIDVPWAGQYI-T-SNPCIRFVSIDNKKRNIESSEIGPSLVIHTTVPFGVTY 254 (342)
T ss_dssp SCHHHHHHHHTCCBCCEEEEEEECSSCC--CCSCSEEEC-S-SCSSEEEEEEHHHHTTCCCC-CCCEEEEEECHHHHHHT
T ss_pred cCHHHHHHHhcCCccccEEEEEEECCCCccCCceeeEEc-c-CCcceEEEEccccCCCCCCCCCCceEEEECCHHHHHHh
Confidence 888889999999999999999999999887522222222 2 12223223222 111 1 2234577777777788888
Q ss_pred hcCChHHHHHHHHHHHHHHHhCCCCCCCceEeeccCCCCCCCCcccCCCCCCCCHHHHHHHh-cccCceEEccC
Q 013178 376 ERQSDEKTKAEIMNNVLRKLFGNKIPEPQSIFVPRWWSNRFFNGSYSNWPNGFTQQSYKELK-VSICKLHVGLT 448 (448)
Q Consensus 376 ~~~~~~e~~~~~~~~~L~~~~g~~~~~~~~~~~~~W~~~~~~~g~~~~~~~g~~~~~~~~~~-~p~~~i~fAG~ 448 (448)
.+++++|+.+.++ ++|++++| ..++|..+.++||. .+++.+..... ...+. .+.++|++||.
T Consensus 255 ~~~~~~~~~~~~~-~~l~~~~g-~~~~p~~~~v~rW~------~a~p~~~~~~~---~~~~~~~~~~~l~laGd 317 (342)
T 3qj4_A 255 LEHSIEDVQELVF-QQLENILP-GLPQPIATKCQKWR------HSQVTNAAANC---PGQMTLHHKPFLACGGD 317 (342)
T ss_dssp TTSCHHHHHHHHH-HHHHHHSC-SCCCCSEEEEEEET------TCSBSSCCSSS---CSCEEEETTTEEEECSG
T ss_pred hcCCHHHHHHHHH-HHHHHhcc-CCCCCceeeecccc------ccccccccCCC---cceeEecCCccEEEEcc
Confidence 8999999999999 99999998 45678888999998 44443322100 01122 35588999984
No 22
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}
Probab=99.96 E-value=9.7e-29 Score=240.94 Aligned_cols=370 Identities=13% Similarity=0.110 Sum_probs=218.7
Q ss_pred CcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEEceeCCceeeecceeccCCCCCCCHHHHHHHHcCCceee
Q 013178 28 NSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNIGGHTIELGANWVNSGGPKSSPSLQIAKKIKLKTFY 107 (448)
Q Consensus 28 ~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~l~~~lgl~~~~ 107 (448)
+||+|||||++||+||++|+++|+ +|+|||+++++||++.+...+|+.+|.|++++... .....+.++++++|+....
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~~G~-~V~vlE~~~~~GG~~~~~~~~g~~~d~G~~~~~~~-~~~~~~~~l~~~lg~~~~~ 78 (421)
T 3nrn_A 1 MRAVVVGAGLGGLLAGAFLARNGH-EIIVLEKSAMIGGRFTNLPYKGFQLSTGALHMIPH-GEDGPLAHLLRILGAKVEI 78 (421)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTC-EEEEECSSSSSCTTSSEEEETTEEEESSSCSEETT-TTSSHHHHHHHHHTCCCCE
T ss_pred CcEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCCCCCceeEEeccCCEEEecCCeEEEcc-CCChHHHHHHHHhCCcceE
Confidence 489999999999999999999999 89999999999999999999999999998765431 2456889999999987544
Q ss_pred cccccccceEEecCCccccHHHHHHHHH--HHHHhHHHHHHHhhhccCCCCCCCcccHHHHHHhhcCCCCChHHHHHHHH
Q 013178 108 SDYANLTSNIYKQDGGLYQKHVVESAVR--IAKTRDAFCTNLSKMLSSETTRDDDTSILGSQRLLKEVPMTPLEMAIDYF 185 (448)
Q Consensus 108 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (448)
...... ..++. +|+.++.......+. ....+.......... .. ..++.++.++..-.. +.....+.+...+
T Consensus 79 ~~~~~~-~~~~~-~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~-~~~~~s~~~~l~~~g-~~~~~~~~~~~~~ 151 (421)
T 3nrn_A 79 VNSNPK-GKILW-EGKIFHYRESWKFLSVKEKAKALKLLAEIRMN---KL-PKEEIPADEWIKEKI-GENEFLLSVLESF 151 (421)
T ss_dssp EECSSS-CEEEE-TTEEEEGGGGGGGCC--------CCHHHHHTT---CC-CCCCSBHHHHHHHHT-CCCHHHHHHHHHH
T ss_pred EECCCC-eEEEE-CCEEEEcCCchhhCCHhHHHHHHHHHHHHHhc---cC-CCCCCCHHHHHHHhc-CCcHHHHHHHHHH
Confidence 333222 22333 555433211100000 000000111111100 00 112244444322211 1122222222222
Q ss_pred hhccccCCCcccccccccCCCccc-ccCCCCeeeeeCCCchHHHHHHHHHhhhcccccccCCCceecCceeEEEEecCCc
Q 013178 186 FNDYEDAEPPRITSLKTTYPRNQL-VDFGEDSYFVADPRGFESVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDK 264 (448)
Q Consensus 186 ~~~~~~~~~~~~~s~~~~~~~~~~-~~~~~~~~~~~~~~G~~~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~ 264 (448)
.. ..++.++...++......... ...+. ...+.+|++.++++|++.+.+ .|++|++|++|++|+.++++
T Consensus 152 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~gG~~~l~~~l~~~~~~------~G~~i~~~~~V~~i~~~~~~ 221 (421)
T 3nrn_A 152 AG-WADSVSLSDLTALELAKEIRAALRWGG---PGLIRGGCKAVIDELERIIME------NKGKILTRKEVVEINIEEKK 221 (421)
T ss_dssp HH-HHHSSCGGGSBHHHHHHHHHHHHHHCS---CEEETTCHHHHHHHHHHHHHT------TTCEEESSCCEEEEETTTTE
T ss_pred HH-HhcCCCcccCCHHHHHHHHHHHhhcCC---cceecCCHHHHHHHHHHHHHH------CCCEEEcCCeEEEEEEECCE
Confidence 11 113444444444322211110 11111 224589999999999999977 69999999999999998888
Q ss_pred EEEEeCCCcEEEeCEEEEeechhhccCCCccccCCCCHHHHHHHhhcCCcceeEEEEEcCCCCCCCCCCcceEEEecccC
Q 013178 265 VTVKTEDGSVYQANYAIVSVSIGVLQSDFIEFTPNLPLWKKLAINNFNMAIYTKIFMKFPYKFWPTGPGTEFFIYAHERR 344 (448)
Q Consensus 265 v~V~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~p~l~~~~~~~~~~~~~~~~~~v~l~~~~~~w~~~~~~~~~~~~~~~~ 344 (448)
+ | +.+|++++||+||+|+|+..+.+++ . .+.+|+...+.++++.+.+..++++.++++.... ..++ +.+...
T Consensus 222 v-V-~~~g~~~~ad~Vv~a~~~~~~~~ll-~-~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~---~~~~-~~~~~~ 293 (421)
T 3nrn_A 222 V-Y-TRDNEEYSFDVAISNVGVRETVKLI-G-RDYFDRDYLKQVDSIEPSEGIKFNLAVPGEPRIG---NTIV-FTPGLM 293 (421)
T ss_dssp E-E-ETTCCEEECSEEEECSCHHHHHHHH-C-GGGSCHHHHHHHHTCCCCCEEEEEEEEESSCSSC---SSEE-ECTTSS
T ss_pred E-E-EeCCcEEEeCEEEECCCHHHHHHhc-C-cccCCHHHHHHHhCCCCCceEEEEEEEcCCcccC---CeEE-EcCCcc
Confidence 8 6 4567799999999999998887622 1 1357877778899999999999999999885432 2333 332211
Q ss_pred Cccccccc----ccccCCCCcEEEEEecchhhhhhhcCChHHHHHHHHHHHHHHHhCCCCCCCceEeeccCCCCCCCCcc
Q 013178 345 GYFPIWQH----LENEMPGSNILFVTVTDEESRRVERQSDEKTKAEIMNNVLRKLFGNKIPEPQSIFVPRWWSNRFFNGS 420 (448)
Q Consensus 345 ~~~~~~~~----~~~~~~~~~~l~~~~~~~~a~~~~~~~~~e~~~~~~~~~L~~~~g~~~~~~~~~~~~~W~~~~~~~g~ 420 (448)
+..+..+ ....+++..++.+++... ..+++|..+.++ ++|++++| ......+++|. .+
T Consensus 294 -~~~i~~~s~~~p~~ap~G~~~~~~~~~~~------~~~~~~~~~~~~-~~L~~~~p----~~~~~~~~~~~------~~ 355 (421)
T 3nrn_A 294 -INGFNEPSALDKSLAREGYTLIMAHMALK------NGNVKKAIEKGW-EELLEIFP----EGEPLLAQVYR------DG 355 (421)
T ss_dssp -SCEEECGGGTCGGGSCTTEEEEEEEEECT------TCCHHHHHHHHH-HHHHHHCT----TCEEEEEEEC---------
T ss_pred -eeeEeccCCCCCCcCCCCceEEEEEEeec------cccHHHHHHHHH-HHHHHHcC----CCeEEEeeecc------CC
Confidence 2111111 112334445555554321 234456689999 99999997 22334667787 45
Q ss_pred cCCC--CCCCCHHHHHHHhcccCceEEccC
Q 013178 421 YSNW--PNGFTQQSYKELKVSICKLHVGLT 448 (448)
Q Consensus 421 ~~~~--~~g~~~~~~~~~~~p~~~i~fAG~ 448 (448)
++.+ .+|.. .+ ..| ++||+||.
T Consensus 356 ~p~~~~~~~~~---~~--~~~-~gl~laGd 379 (421)
T 3nrn_A 356 NPVNRTRAGLH---IE--WPL-NEVLVVGD 379 (421)
T ss_dssp ----------C---CC--CCC-SSEEECST
T ss_pred CCcccccCCCC---CC--CCC-CcEEEECC
Confidence 5544 23332 12 567 99999994
No 23
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}
Probab=99.96 E-value=1.5e-27 Score=237.99 Aligned_cols=282 Identities=15% Similarity=0.153 Sum_probs=145.5
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEEceeCCceeeecceeccCCCCCCCHHHHHHHHcCCcee
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNIGGHTIELGANWVNSGGPKSSPSLQIAKKIKLKTF 106 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~l~~~lgl~~~ 106 (448)
+++|||||||++||+||++|+++|+ +|+||||++++||++.|++.+|+.+|.|++++.. ...+.++++.+|....
T Consensus 1 Mk~VvVIGaG~~GL~aA~~La~~G~-~V~VlEa~~~~GG~~~t~~~~G~~~D~G~~~~~~----~~~~~~l~~~~g~~~~ 75 (501)
T 4dgk_A 1 MKPTTVIGAGFGGLALAIRLQAAGI-PVLLLEQRDKPGGRAYVYEDQGFTFDAGPTVITD----PSAIEELFALAGKQLK 75 (501)
T ss_dssp CCCEEEECCHHHHHHHHHHHHHTTC-CEEEECCC-------CEEEETTEEEECSCCCBSC----THHHHHHHHTTTCCGG
T ss_pred CCCEEEECCcHHHHHHHHHHHHCCC-cEEEEccCCCCCCcEEEEEeCCEEEecCceeecC----chhHHHHHHHhcchhh
Confidence 5789999999999999999999999 7999999999999999999999999999999865 2345677777774421
Q ss_pred --e--cccccccceEEecCCcccc----HHHHHHHHHH-----HHHhHHHHHHHhhhccCCC---CCCCcccHHHHH---
Q 013178 107 --Y--SDYANLTSNIYKQDGGLYQ----KHVVESAVRI-----AKTRDAFCTNLSKMLSSET---TRDDDTSILGSQ--- 167 (448)
Q Consensus 107 --~--~~~~~~~~~~~~~~g~~~~----~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~--- 167 (448)
. .+.... ..++..+|..+. .......+.. ...+.++.+.....+.... ...+..+..+..
T Consensus 76 ~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (501)
T 4dgk_A 76 EYVELLPVTPF-YRLCWESGKVFNYDNDQTRLEAQIQQFNPRDVEGYRQFLDYSRAVFKEGYLKLGTVPFLSFRDMLRAA 154 (501)
T ss_dssp GTCCEEEESSS-EEEEETTSCEEEECSCHHHHHHHHHHHCTHHHHHHHHHHHHHHHHTSSSCC--CCCCCCCHHHHHHSG
T ss_pred hceeeEecCcc-eEEEcCCCCEEEeeccHHHHHHHHhhcCccccchhhhHHHHHHHhhhhhhhhccccccchhhhhhhhh
Confidence 1 111111 122333555433 1111111110 1111122222111111100 001112222211
Q ss_pred --------------HhhcCCCCChHHHHHHHHhhccccCCCccccc-ccccCCCcccccCCCCeeeeeCCCchHHHHHHH
Q 013178 168 --------------RLLKEVPMTPLEMAIDYFFNDYEDAEPPRITS-LKTTYPRNQLVDFGEDSYFVADPRGFESVVHSV 232 (448)
Q Consensus 168 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l 232 (448)
.+.+++....++.++.+... ..+..+...+ ..... ......... ..++||++.++++|
T Consensus 155 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~g~~p~~~~~~~~~~---~~~~~~~G~--~~p~GG~~~l~~aL 227 (501)
T 4dgk_A 155 PQLAKLQAWRSVYSKVASYIEDEHLRQAFSFHSL--LVGGNPFATSSIYTLI---HALEREWGV--WFPRGGTGALVQGM 227 (501)
T ss_dssp GGTTTSHHHHHHHHHHHTTCCCHHHHHHHHHHHH--HHHSCC--CCCTHHHH---HHHHSCCCE--EEETTHHHHHHHHH
T ss_pred hhhhhhhhcccHHHHHHHHhccHHHHhhhhhhhc--ccCCCcchhhhhhhhh---hhhhccCCe--EEeCCCCcchHHHH
Confidence 11222222222222222111 0112222111 11110 111122222 24589999999999
Q ss_pred HHhhhcccccccCCCceecCceeEEEEecCCcEE-EEeCCCcEEEeCEEEEeechhhccCCCccccCCCCHHHHHHHhhc
Q 013178 233 AKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVT-VKTEDGSVYQANYAIVSVSIGVLQSDFIEFTPNLPLWKKLAINNF 311 (448)
Q Consensus 233 ~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~-V~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~p~l~~~~~~~~~~~ 311 (448)
++.+++ .|++|++|++|++|..++++++ |++++|+++.||+||+++++..+.+.++.- .+++....+.+++.
T Consensus 228 ~~~~~~------~Gg~I~~~~~V~~I~~~~~~~~gV~~~~g~~~~ad~VV~~a~~~~~~~~Ll~~-~~~~~~~~~~~~~~ 300 (501)
T 4dgk_A 228 IKLFQD------LGGEVVLNARVSHMETTGNKIEAVHLEDGRRFLTQAVASNADVVHTYRDLLSQ-HPAAVKQSNKLQTK 300 (501)
T ss_dssp HHHHHH------TTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSCEEECCC--------------------------
T ss_pred HHHHHH------hCCceeeecceeEEEeeCCeEEEEEecCCcEEEcCEEEECCCHHHHHHHhccc-cccchhhhhhhhcc
Confidence 999987 6999999999999999999876 899999999999999999876554323322 23444445566777
Q ss_pred CCc-ceeEEEEEcCCCCC
Q 013178 312 NMA-IYTKIFMKFPYKFW 328 (448)
Q Consensus 312 ~~~-~~~~v~l~~~~~~w 328 (448)
++. +..++++.++.+..
T Consensus 301 ~~~~s~~~~~~~l~~~~~ 318 (501)
T 4dgk_A 301 RMSNSLFVLYFGLNHHHD 318 (501)
T ss_dssp --CCEEEEEEEEESSCCT
T ss_pred ccCCceeEEEecccCCcc
Confidence 764 57788888887653
No 24
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Probab=99.95 E-value=5.2e-28 Score=236.09 Aligned_cols=378 Identities=14% Similarity=0.137 Sum_probs=209.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcC-CCcEEEEecCCCCCceEEEceeCCceeeecceeccCCCCCCCHHHHHHHHcCC
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAG-YKDFIILEASSRVGGRLHKGNIGGHTIELGANWVNSGGPKSSPSLQIAKKIKL 103 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G-~~~V~vlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~l~~~lgl 103 (448)
.+++||+|||||++||+||+.|+++| + +|+|||+++++||++.|...+|+.+|.|++++.. .+..+.++++++|+
T Consensus 4 ~~~~~v~IIGaG~aGl~aA~~L~~~g~~-~v~v~E~~~~~GG~~~t~~~~G~~~d~G~~~~~~---~~~~~~~l~~~~g~ 79 (424)
T 2b9w_A 4 SKDSRIAIIGAGPAGLAAGMYLEQAGFH-DYTILERTDHVGGKCHSPNYHGRRYEMGAIMGVP---SYDTIQEIMDRTGD 79 (424)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHHTTCC-CEEEECSSSCSSTTCCCCEETTEECCSSCCCBCT---TCHHHHHHHHHHCC
T ss_pred CCCCCEEEECcCHHHHHHHHHHHhCCCC-cEEEEECCCCCCCcccccCCCCcccccCceeecC---CcHHHHHHHHHhCC
Confidence 46789999999999999999999999 8 7999999999999999999999999999999876 67889999999998
Q ss_pred ceeecccccccceEEecCCccccHH----HHHHHHHHHHHhHHHHHHHhhhccCCC-----CCCCcccHHHHHHhhcCCC
Q 013178 104 KTFYSDYANLTSNIYKQDGGLYQKH----VVESAVRIAKTRDAFCTNLSKMLSSET-----TRDDDTSILGSQRLLKEVP 174 (448)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 174 (448)
+...... ...++..+|+..... ...........+..........+.... ......++.++......
T Consensus 80 ~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~-- 154 (424)
T 2b9w_A 80 KVDGPKL---RREFLHEDGEIYVPEKDPVRGPQVMAAVQKLGQLLATKYQGYDANGHYNKVHEDLMLPFDEFLALNGC-- 154 (424)
T ss_dssp CCCSCCC---CEEEECTTSCEECGGGCTTHHHHHHHHHHHHHHHHHTTTTTTTSSSSSSCCCGGGGSBHHHHHHHTTC--
T ss_pred ccccccc---cceeEcCCCCEeccccCcccchhHHHHHHHHHHHHhhhhhhcccccchhhhhhhhccCHHHHHHhhCc--
Confidence 7543211 122333455432110 000111111111111111111111000 01112344443322211
Q ss_pred CChHHHHHHHHhhcc---ccCCCcccccccccCCCcc---cccCCCCeeeeeCCCchHHHHHHHHHhhhcccccccCCCc
Q 013178 175 MTPLEMAIDYFFNDY---EDAEPPRITSLKTTYPRNQ---LVDFGEDSYFVADPRGFESVVHSVAKQFLSHRHQVIRDPR 248 (448)
Q Consensus 175 ~~~~~~~~~~~~~~~---~~~~~~~~~s~~~~~~~~~---~~~~~~~~~~~~~~~G~~~l~~~l~~~l~~~~~~~~~g~~ 248 (448)
... .+.+...+ .++ ++...++...+.... ........ .....+|++.++++|.+.+ +.+
T Consensus 155 ~~~----~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~l~~~l~~~l---------~~~ 219 (424)
T 2b9w_A 155 EAA----RDLWINPFTAFGYG-HFDNVPAAYVLKYLDFVTMMSFAKGD-LWTWADGTQAMFEHLNATL---------EHP 219 (424)
T ss_dssp GGG----HHHHTTTTCCCCCC-CTTTSBHHHHHHHSCHHHHHHHHHTC-CBCCTTCHHHHHHHHHHHS---------SSC
T ss_pred HHH----HHHHHHHHHhhccC-ChHhcCHHHHHHhhhHhhhhcccCCc-eEEeCChHHHHHHHHHHhh---------cce
Confidence 111 12221111 122 222222211110000 00000011 1245799999999999996 568
Q ss_pred eecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeechhhccCCCccccCCCCHHHHHHHhhcCCcceeEEEEEcCCCCC
Q 013178 249 LKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSIGVLQSDFIEFTPNLPLWKKLAINNFNMAIYTKIFMKFPYKFW 328 (448)
Q Consensus 249 i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~p~l~~~~~~~~~~~~~~~~~~v~l~~~~~~w 328 (448)
|++|++|++|+.++++|.|.+.+| +++||+||+|+|+..+.+. .|++|++ ++.+.++.+.++. +.+.+...++
T Consensus 220 v~~~~~V~~i~~~~~~v~v~~~~g-~~~ad~Vv~a~~~~~~~~~----l~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~ 292 (424)
T 2b9w_A 220 AERNVDITRITREDGKVHIHTTDW-DRESDVLVLTVPLEKFLDY----SDADDDE-REYFSKIIHQQYM-VDACLVKEYP 292 (424)
T ss_dssp CBCSCCEEEEECCTTCEEEEESSC-EEEESEEEECSCHHHHTTS----BCCCHHH-HHHHTTCEEEEEE-EEEEEESSCC
T ss_pred EEcCCEEEEEEEECCEEEEEECCC-eEEcCEEEECCCHHHHhhc----cCCCHHH-HHHHhcCCcceeE-EEEEEeccCC
Confidence 999999999999888899999888 5999999999999987542 2444444 3456777776533 2222222332
Q ss_pred CCCCCcceEEEeccc----CCcccccccccccCCCCcEEEEEecchhhhhhhcCChHHHHHHHHHHHHHHHhCCCCCCCc
Q 013178 329 PTGPGTEFFIYAHER----RGYFPIWQHLENEMPGSNILFVTVTDEESRRVERQSDEKTKAEIMNNVLRKLFGNKIPEPQ 404 (448)
Q Consensus 329 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~e~~~~~~~~~L~~~~g~~~~~~~ 404 (448)
.. .. +.+.+ .....+|...........++++|..+. ...+..++++++++.++ ++|++ ++...+++
T Consensus 293 ~~----~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~v~-~~l~~-l~~~~~~~- 362 (424)
T 2b9w_A 293 TI----SG--YVPDNMRPERLGHVMVYYHRWADDPHQIITTYLLRN-HPDYADKTQEECRQMVL-DDMET-FGHPVEKI- 362 (424)
T ss_dssp SS----EE--ECGGGGSGGGTTSCCEEEECCTTCTTSCEEEEEECC-BTTBCCCCHHHHHHHHH-HHHHH-TTCCEEEE-
T ss_pred cc----cc--cccCCCCCcCCCcceEEeeecCCCCceEEEEEeccC-CCcccccChHHHHHHHH-HHHHH-cCCccccc-
Confidence 11 11 12111 111122322111111235677776653 34566788999999999 99998 55532222
Q ss_pred eEeeccCCCCCCCCcccCCCCCCCCHHHHHHHhcccCceEEccC
Q 013178 405 SIFVPRWWSNRFFNGSYSNWPNGFTQQSYKELKVSICKLHVGLT 448 (448)
Q Consensus 405 ~~~~~~W~~~~~~~g~~~~~~~g~~~~~~~~~~~p~~~i~fAG~ 448 (448)
+...+|...|... -..+..|... +..-.++.+++||||.
T Consensus 363 -~~~~~w~~~p~~~--~~~~~~G~~~--~~~~~~~~~~l~~aG~ 401 (424)
T 2b9w_A 363 -IEEQTWYYFPHVS--SEDYKAGWYE--KVEGMQGRRNTFYAGE 401 (424)
T ss_dssp -EEEEEEEEEEECC--HHHHHTTHHH--HHHHTTTGGGEEECSG
T ss_pred -ccccceeeeeccC--HHHHhccHHH--HHHHHhCCCCceEecc
Confidence 2334665322110 0011223211 1122344579999994
No 25
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Probab=99.94 E-value=8e-25 Score=206.72 Aligned_cols=298 Identities=13% Similarity=0.165 Sum_probs=201.5
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEEceeCCceeeecceeccCCCCCCCHHHHHHHHcCCcee
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNIGGHTIELGANWVNSGGPKSSPSLQIAKKIKLKTF 106 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~l~~~lgl~~~ 106 (448)
++||+|||||++||++|+.|+++|. +|+|||++..+||++.+....+..++.|..++.. ....+.++++++.....
T Consensus 2 ~~dV~IIGaG~~Gl~~A~~L~~~G~-~V~vlE~~~~~gg~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 77 (336)
T 1yvv_A 2 TVPIAIIGTGIAGLSAAQALTAAGH-QVHLFDKSRGSGGRMSSKRSDAGALDMGAQYFTA---RDRRFATAVKQWQAQGH 77 (336)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSSSCGGGCEEEETTEEEECSCCCBCC---CSHHHHHHHHHHHHHTS
T ss_pred CceEEEECCcHHHHHHHHHHHHCCC-cEEEEECCCCCcccceeEecCCCeEecCCCeEec---CCHHHHHHHHHHHhCCC
Confidence 5799999999999999999999999 7999999999999999888888889999888876 44555555555432110
Q ss_pred ecccccccceEEecCCccccHHHHHHHHHHHHHhHHHHHHHhhhccCCCCCCCcccHHHHHHhhcCCCCChHHHHHHHHh
Q 013178 107 YSDYANLTSNIYKQDGGLYQKHVVESAVRIAKTRDAFCTNLSKMLSSETTRDDDTSILGSQRLLKEVPMTPLEMAIDYFF 186 (448)
Q Consensus 107 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (448)
...... ...+...+..
T Consensus 78 ~~~~~~--~~~~~~~~~~-------------------------------------------------------------- 93 (336)
T 1yvv_A 78 VAEWTP--LLYNFHAGRL-------------------------------------------------------------- 93 (336)
T ss_dssp EEEECC--CEEEESSSBC--------------------------------------------------------------
T ss_pred eeeccc--cceeccCccc--------------------------------------------------------------
Confidence 000000 0000000000
Q ss_pred hccccCCCcccccccccCCCcccccCCCCeeeeeCCCchHHHHHHHHHhhhcccccccCCCceecCceeEEEEecCCcEE
Q 013178 187 NDYEDAEPPRITSLKTTYPRNQLVDFGEDSYFVADPRGFESVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVT 266 (448)
Q Consensus 187 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~ 266 (448)
.. ...... .+....|+..+.+++++ |++|+++++|++|+.+++++.
T Consensus 94 -----~~----------------~~~~~~--~~~~~~~~~~l~~~l~~-----------g~~i~~~~~v~~i~~~~~~~~ 139 (336)
T 1yvv_A 94 -----SP----------------SPDEQV--RWVGKPGMSAITRAMRG-----------DMPVSFSCRITEVFRGEEHWN 139 (336)
T ss_dssp -----CC----------------CCTTSC--EEEESSCTHHHHHHHHT-----------TCCEECSCCEEEEEECSSCEE
T ss_pred -----cc----------------CCCCCc--cEEcCccHHHHHHHHHc-----------cCcEEecCEEEEEEEeCCEEE
Confidence 00 000000 11124678888877765 458999999999999999999
Q ss_pred EEeCCCcEEE-eCEEEEeechhhccCCCccccCCCCHHHHHHHhhcCCcceeEEEEEcCCCCCCCCCCcceEEEecccCC
Q 013178 267 VKTEDGSVYQ-ANYAIVSVSIGVLQSDFIEFTPNLPLWKKLAINNFNMAIYTKIFMKFPYKFWPTGPGTEFFIYAHERRG 345 (448)
Q Consensus 267 V~~~~g~~~~-ad~VI~a~p~~~l~~~~~~~~p~l~~~~~~~~~~~~~~~~~~v~l~~~~~~w~~~~~~~~~~~~~~~~~ 345 (448)
|++.+|+.+. ||+||+|+|+..+.+++ +. .+.....+..+.|.+..++.+.|++++|.. ...++. . +..
T Consensus 140 v~~~~g~~~~~a~~vV~a~g~~~~~~~~----~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~--~~~ 209 (336)
T 1yvv_A 140 LLDAEGQNHGPFSHVIIATPAPQASTLL----AA-APKLASVVAGVKMDPTWAVALAFETPLQTP--MQGCFV-Q--DSP 209 (336)
T ss_dssp EEETTSCEEEEESEEEECSCHHHHGGGG----TT-CHHHHHHHTTCCEEEEEEEEEEESSCCSCC--CCEEEE-C--SSS
T ss_pred EEeCCCcCccccCEEEEcCCHHHHHHhh----cc-CHHHHHHHhhcCccceeEEEEEecCCCCCC--CCeEEe-C--CCc
Confidence 9999997664 99999999999877622 22 234457788999999999999999998865 222222 1 222
Q ss_pred ccccccccc-ccCCCC-cEEEEEecchhhhhhhcCChHHHHHHHHHHHHHHHhCCCCCCCceEeeccCCCCCCCCcccCC
Q 013178 346 YFPIWQHLE-NEMPGS-NILFVTVTDEESRRVERQSDEKTKAEIMNNVLRKLFGNKIPEPQSIFVPRWWSNRFFNGSYSN 423 (448)
Q Consensus 346 ~~~~~~~~~-~~~~~~-~~l~~~~~~~~a~~~~~~~~~e~~~~~~~~~L~~~~g~~~~~~~~~~~~~W~~~~~~~g~~~~ 423 (448)
+..++.... +...+. ..++.+..++.+..+..++++++.+.++ +.+.+++|...+.|.....++|. -+++.
T Consensus 210 ~~~l~~~~~~p~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~-~~l~~~lg~~~~~p~~~~~~rw~------~a~~~ 282 (336)
T 1yvv_A 210 LDWLARNRSKPERDDTLDTWILHATSQWSRQNLDASREQVIEHLH-GAFAELIDCTMPAPVFSLAHRWL------YARPA 282 (336)
T ss_dssp EEEEEEGGGSTTCCCSSEEEEEEECHHHHHHTTTSCHHHHHHHHH-HHHHTTCSSCCCCCSEEEEEEEE------EEEES
T ss_pred eeEEEecCcCCCCCCCCcEEEEEeCHHHHHHHHhCCHHHHHHHHH-HHHHHHhCCCCCCCcEEEccccC------ccCCC
Confidence 323333221 111111 3566666667777888899999999999 99999998766667777899997 23333
Q ss_pred CCCCCCHHHHHHHhcccCceEEccC
Q 013178 424 WPNGFTQQSYKELKVSICKLHVGLT 448 (448)
Q Consensus 424 ~~~g~~~~~~~~~~~p~~~i~fAG~ 448 (448)
+..+.. ....+.+||+|||.
T Consensus 283 ~~~~~~-----~~~~~~~rl~laGD 302 (336)
T 1yvv_A 283 GAHEWG-----ALSDADLGIYVCGD 302 (336)
T ss_dssp SCCCCS-----CEEETTTTEEECCG
T ss_pred CCCCCC-----eeecCCCCEEEEec
Confidence 333332 12345689999983
No 26
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*
Probab=99.86 E-value=2.5e-21 Score=184.01 Aligned_cols=314 Identities=11% Similarity=0.085 Sum_probs=188.1
Q ss_pred CCCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEEce-eCCcee-eecceeccCCCCCCCHHHHHHHH
Q 013178 23 TSPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGN-IGGHTI-ELGANWVNSGGPKSSPSLQIAKK 100 (448)
Q Consensus 23 ~~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~~-~~g~~~-d~G~~~~~~~~~~~~~~~~l~~~ 100 (448)
.....+||+|||||++||++|+.|+++|. +|+|+|+++++||++.+.. ..|..+ +.|+++++. ....+++++++
T Consensus 25 ~~~~~~dv~IIGaG~aGl~aA~~l~~~g~-~v~v~E~~~~~GG~~~~~~~~~G~~~~~~G~~~~~~---~~~~~~~~~~~ 100 (397)
T 3hdq_A 25 QESKGFDYLIVGAGFAGSVLAERLASSGQ-RVLIVDRRPHIGGNAYDCYDDAGVLIHPYGPHIFHT---NSKDVFEYLSR 100 (397)
T ss_dssp CCCCCEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSSSSGGGCCEECTTSCEECTTSCCCCEE---SCHHHHHHHHT
T ss_pred ccCCCCCEEEECccHHHHHHHHHHHHCCC-ceEEEeccCCCCCccceeeccCCceEeecCCcccCC---ChHHHHHHHHH
Confidence 34567999999999999999999999999 7999999999999999876 578765 999999998 78889999999
Q ss_pred cCCceeecccccccceEEecCCccccHH----HHHHHHHHHHHhHHHHHHHhhhccCCCCCCCcccHHHHH--HhhcCCC
Q 013178 101 IKLKTFYSDYANLTSNIYKQDGGLYQKH----VVESAVRIAKTRDAFCTNLSKMLSSETTRDDDTSILGSQ--RLLKEVP 174 (448)
Q Consensus 101 lgl~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 174 (448)
+|..... .. ...++. +|+.++.+ .+..++.... .......+..... .. ..++.++.++. ++..
T Consensus 101 ~~~~~~~---~~-~~~~~~-~g~l~~lP~~~~~~~~l~~~~~-~~~~~~~~l~~~~-~~-~~~~~s~~e~~~~~~G~--- 169 (397)
T 3hdq_A 101 FTEWRPY---QH-RVLASV-DGQLLPIPINLDTVNRLYGLNL-TSFQVEEFFASVA-EK-VEQVRTSEDVVVSKVGR--- 169 (397)
T ss_dssp SCCEEEC---CC-BEEEEE-TTEEEEESCCHHHHHHHHTCCC-CHHHHHHHHHHHC-CC-CSSCCBHHHHHHHHHHH---
T ss_pred hhhcccc---cc-cceEEE-CCEEEEcCCChHHHHHhhccCC-CHHHHHHHHhhcc-cC-CCCCcCHHHHHHHhcCH---
Confidence 9954321 11 123343 77765522 1111111000 0001111111111 11 12445555542 2221
Q ss_pred CChHHHHHHHHhhccccCCCcccccccccCCCcccccCC---CCeee-eeCCCchHHHHHHHHHhhhcccccccCCCcee
Q 013178 175 MTPLEMAIDYFFNDYEDAEPPRITSLKTTYPRNQLVDFG---EDSYF-VADPRGFESVVHSVAKQFLSHRHQVIRDPRLK 250 (448)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~---~~~~~-~~~~~G~~~l~~~l~~~l~~~~~~~~~g~~i~ 250 (448)
...+.+...+. ...++.+++.+|+..+...-...... ....+ ..+.+|++.++++|++. .|++|+
T Consensus 170 -~~~e~~~~py~-~k~~~~~~~~Lsa~~~~Rvp~~~~~d~~yf~~~~qg~P~gGy~~l~e~l~~~---------~g~~V~ 238 (397)
T 3hdq_A 170 -DLYNKFFRGYT-RKQWGLDPSELDASVTARVPTRTNRDNRYFADTYQAMPLHGYTRMFQNMLSS---------PNIKVM 238 (397)
T ss_dssp -HHHHHHTHHHH-HHHHSSCGGGSBTTTGGGSCCCSSCCCBSCCCSEEEEETTCHHHHHHHHTCS---------TTEEEE
T ss_pred -HHHHHHHHHHh-CchhCCCHHHHHHHHHHhcCcccccCccchhhhheeccCCCHHHHHHHHHhc---------cCCEEE
Confidence 11111111111 11267777777754221110111111 11222 34689999999999775 588999
Q ss_pred cCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeechhhccCCCccccCCCCHHHHHHHhhcCCcceeEEEEEcCCCCCCC
Q 013178 251 LNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSIGVLQSDFIEFTPNLPLWKKLAINNFNMAIYTKIFMKFPYKFWPT 330 (448)
Q Consensus 251 ~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~p~l~~~~~~~~~~~~~~~~~~v~l~~~~~~w~~ 330 (448)
+|++|+++ +.++.+|+||+|+|++.+.. . ...+++|.+...+.+.++...+.+
T Consensus 239 l~~~v~~~-------------~~~~~~d~vI~T~P~d~~~~----~----------~~g~L~yrsl~~~~~~~~~~~~~~ 291 (397)
T 3hdq_A 239 LNTDYREI-------------ADFIPFQHMIYTGPVDAFFD----F----------CYGKLPYRSLEFRHETHDTEQLLP 291 (397)
T ss_dssp ESCCGGGT-------------TTTSCEEEEEECSCHHHHTT----T----------TTCCCCEEEEEEEEEEESSSCSCS
T ss_pred ECCeEEec-------------cccccCCEEEEcCCHHHHHH----H----------hcCCCCCceEEEEEEEeccccCCC
Confidence 99999732 34567999999999987743 1 246788999999999998765543
Q ss_pred CCCcceEEEecccCCcccccccc--cccCCCCcEEEEEecchhhhhhhcCChHHHHHHHHHHHHHH
Q 013178 331 GPGTEFFIYAHERRGYFPIWQHL--ENEMPGSNILFVTVTDEESRRVERQSDEKTKAEIMNNVLRK 394 (448)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~a~~~~~~~~~e~~~~~~~~~L~~ 394 (448)
..++-+.+.+ .+..+..+. ...+++..+++.-+.....+++.-.++++-.+.+. +.++.
T Consensus 292 ---~~~vn~~d~~-p~tRi~e~k~~~~~~~~~t~i~~Ey~~~~~~pyYpv~~~~~~~~~~-~y~~~ 352 (397)
T 3hdq_A 292 ---TGTVNYPNDY-AYTRVSEFKHITGQRHHQTSVVYEYPRAEGDPYYPVPRPENAELYK-KYEAL 352 (397)
T ss_dssp ---SSEEECSSSS-SCSEEEEHHHHHCCCCSSEEEEEEEEESSSSCCEECCSHHHHHHHH-HHHHH
T ss_pred ---CeEEEeCCCC-cceEEEeecccCCCCCCCEEEEEEECCCCCccccccCchhHHHHHH-HHHHH
Confidence 2343344444 665554332 23333456666555433334555567666666665 55543
No 27
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}
Probab=99.86 E-value=3.5e-23 Score=199.38 Aligned_cols=254 Identities=13% Similarity=0.149 Sum_probs=155.8
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHc-CCCcEEEEecCCCCCceEEEcee--CCcee-eecceeccCCCCCCCHHHHHHH
Q 013178 24 SPPSNSVIIVGAGMSGFMAAKTLEEA-GYKDFIILEASSRVGGRLHKGNI--GGHTI-ELGANWVNSGGPKSSPSLQIAK 99 (448)
Q Consensus 24 ~~~~~dViIIGaGiaGL~aA~~L~~~-G~~~V~vlE~~~~~GGr~~s~~~--~g~~~-d~G~~~~~~~~~~~~~~~~l~~ 99 (448)
|..++||+|||||++||+||+.|+++ |+ +|+|||+++++||++.+... +|+.+ +.|+++++. .++.++++++
T Consensus 4 m~~~~~v~IiGaG~~Gl~aA~~L~~~~g~-~v~v~E~~~~~GG~~~~~~~~~~g~~~~~~G~~~~~~---~~~~~~~~~~ 79 (399)
T 1v0j_A 4 MTARFDLFVVGSGFFGLTIAERVATQLDK-RVLVLERRPHIGGNAYSEAEPQTGIEVHKYGAHLFHT---SNKRVWDYVR 79 (399)
T ss_dssp CCCSCSEEEECCSHHHHHHHHHHHHHSCC-CEEEECSSSSSSGGGCEEECTTTCCEEETTSCCCEEE---SCHHHHHHHT
T ss_pred ccccCCEEEECCCHHHHHHHHHHHHhCCC-CEEEEeCCCCCCCeeeeccccCCCEEEEeCCCcEEcC---CcHHHHHHHH
Confidence 44579999999999999999999999 99 79999999999999999887 68887 599999987 7889999999
Q ss_pred HcCCceeecccccccceEEecCCccccHH----HHHHHHHH---HHHhHHHHHHHhhhccCCCCCCCcccHHHHH--Hhh
Q 013178 100 KIKLKTFYSDYANLTSNIYKQDGGLYQKH----VVESAVRI---AKTRDAFCTNLSKMLSSETTRDDDTSILGSQ--RLL 170 (448)
Q Consensus 100 ~lgl~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 170 (448)
++|+... ... ...++ .+|+.++.+ .+..+... ................ ..++.++.++. .+.
T Consensus 80 ~~g~~~~---~~~-~~~~~-~~G~~~~~p~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~----~~~~~s~~e~l~~~~g 150 (399)
T 1v0j_A 80 QFTDFTD---YRH-RVFAM-HNGQAYQFPMGLGLVSQFFGKYFTPEQARQLIAEQAAEID----TADAQNLEEKAISLIG 150 (399)
T ss_dssp TTCCBCC---CCC-CEEEE-ETTEEEEESSSHHHHHHHHTSCCCHHHHHHHHHHHGGGSC----TTC----CCHHHHHHC
T ss_pred Hhhhhhc---ccc-ceEEE-ECCEEEeCCCCHHHHHHHhcccCCHHHHHHHHHHHhhccC----CCCcccHHHHHHHHHh
Confidence 9997321 111 12233 367654321 11111110 0111111122211111 11222222211 111
Q ss_pred cCCCCChHHHHHHHHhhccccCCCccccccccc--CCCccccc--CCCCeeeeeCCCchHHHHHHHHHhhhcccccccCC
Q 013178 171 KEVPMTPLEMAIDYFFNDYEDAEPPRITSLKTT--YPRNQLVD--FGEDSYFVADPRGFESVVHSVAKQFLSHRHQVIRD 246 (448)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~~~~~~~~--~~~~~~~~~~~~G~~~l~~~l~~~l~~~~~~~~~g 246 (448)
+ ...+.+...+. ...++.+++..++..+ ++...... +....+...+++|++.++++|++. .|
T Consensus 151 ~----~~~~~~~~~~~-~~~~~~~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~p~gG~~~l~~~l~~~---------~g 216 (399)
T 1v0j_A 151 R----PLYEAFVKGYT-AKQWQTDPKELPAANITRLPVRYTFDNRYFSDTYEGLPTDGYTAWLQNMAAD---------HR 216 (399)
T ss_dssp H----HHHHHHTHHHH-HHHHTSCGGGSCGGGCSCCCCCSSSCCCSCCCSEEECBTTHHHHHHHHHTCS---------TT
T ss_pred H----HHHHHHHHHHH-HhhcCCChhhcChHhhhcceeEeccccchhhhhhcccccccHHHHHHHHHhc---------CC
Confidence 1 11111111111 0125566666665543 11111111 111122236789999999999986 47
Q ss_pred CceecCceeEEEEecCCcEEEEeCCCcEE-EeCEEEEeechhhccCCCccccCCCCHHHHHHHhhcCCcceeEEEEEcCC
Q 013178 247 PRLKLNKVVRNISYSKDKVTVKTEDGSVY-QANYAIVSVSIGVLQSDFIEFTPNLPLWKKLAINNFNMAIYTKIFMKFPY 325 (448)
Q Consensus 247 ~~i~~~~~V~~I~~~~~~v~V~~~~g~~~-~ad~VI~a~p~~~l~~~~~~~~p~l~~~~~~~~~~~~~~~~~~v~l~~~~ 325 (448)
++|++|++|++|+.+ | + ++ +||+||+|+|+..+.++ .+.+++|.++..+.+.++.
T Consensus 217 ~~I~l~~~V~~I~~~---v-----~--~~~~aD~VI~t~p~~~l~~~--------------~l~~l~y~s~~~~~~~~~~ 272 (399)
T 1v0j_A 217 IEVRLNTDWFDVRGQ---L-----R--PGSPAAPVVYTGPLDRYFDY--------------AEGRLGWRTLDFEVEVLPI 272 (399)
T ss_dssp EEEECSCCHHHHHHH---H-----T--TTSTTCCEEECSCHHHHTTT--------------TTCCCCEEEEEEEEEEESS
T ss_pred eEEEECCchhhhhhh---h-----h--hcccCCEEEECCcHHHHHhh--------------hhCCCCcceEEEEEEEEcc
Confidence 899999999999753 2 1 34 79999999999988652 2457889888889998887
Q ss_pred CCC
Q 013178 326 KFW 328 (448)
Q Consensus 326 ~~w 328 (448)
+.+
T Consensus 273 ~~~ 275 (399)
T 1v0j_A 273 GDF 275 (399)
T ss_dssp SCS
T ss_pred ccC
Confidence 644
No 28
>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Probab=99.83 E-value=9e-20 Score=171.89 Aligned_cols=84 Identities=35% Similarity=0.475 Sum_probs=74.6
Q ss_pred CCCCCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC-CCCCceEEEce----------eCCceeeecceeccCCCC
Q 013178 21 APTSPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS-SRVGGRLHKGN----------IGGHTIELGANWVNSGGP 89 (448)
Q Consensus 21 ~~~~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~-~~~GGr~~s~~----------~~g~~~d~G~~~~~~~~~ 89 (448)
.+.++..+||+|||||++||+||+.|+++|+ +|+|||++ +++|||+.+.. ..+..+|.|+++++.
T Consensus 38 ~~~~~~~~~V~IIGAGiaGL~aA~~L~~~G~-~V~VlE~~~~~vGGr~~t~~~~~~~~~~~~~~~~~~e~G~~~~~~--- 113 (376)
T 2e1m_A 38 LNPPGPPKRILIVGAGIAGLVAGDLLTRAGH-DVTILEANANRVGGRIKTFHAKKGEPSPFADPAQYAEAGAMRLPS--- 113 (376)
T ss_dssp SSSCCSCCEEEEECCBHHHHHHHHHHHHTSC-EEEEECSCSSCCBTTCCEECCCTTSCCSSSSTTCCEESSCCCEET---
T ss_pred CCCCCCCceEEEECCCHHHHHHHHHHHHCCC-cEEEEeccccccCCceeeecccccccccccCCCcEEecCceeecc---
Confidence 3445678999999999999999999999999 89999999 99999999876 357899999999987
Q ss_pred CCCHHHHHHHHcCCceeec
Q 013178 90 KSSPSLQIAKKIKLKTFYS 108 (448)
Q Consensus 90 ~~~~~~~l~~~lgl~~~~~ 108 (448)
.+..+.++++++|+.....
T Consensus 114 ~~~~~~~~~~~lGl~~~~~ 132 (376)
T 2e1m_A 114 FHPLTLALIDKLGLKRRLF 132 (376)
T ss_dssp TCHHHHHHHHHTTCCEEEE
T ss_pred hHHHHHHHHHHcCCCccee
Confidence 7788999999999987653
No 29
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*
Probab=99.82 E-value=4.5e-20 Score=180.84 Aligned_cols=252 Identities=14% Similarity=0.167 Sum_probs=138.0
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEEceeCC-ce---------------eeecceeccCC
Q 013178 24 SPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNIGG-HT---------------IELGANWVNSG 87 (448)
Q Consensus 24 ~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~~~~g-~~---------------~d~G~~~~~~~ 87 (448)
++..+||||||||++||+||+.|+++|+ +|+|||+++++||++.|.+.+| +. ++.|.++...+
T Consensus 8 ~~~~~dvvVIGaG~~GL~aA~~La~~G~-~V~vlE~~~~~GG~~~t~~~~g~~~~~d~~~~~~~~~~~~~~~g~~~~~~l 86 (453)
T 2bcg_G 8 IDTDYDVIVLGTGITECILSGLLSVDGK-KVLHIDKQDHYGGEAASVTLSQLYEKFKQNPISKEERESKFGKDRDWNVDL 86 (453)
T ss_dssp CCCBCSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSSSCGGGCEECHHHHHHHHCSSCCCHHHHHHHHCCGGGCCEES
T ss_pred ccccCCEEEECcCHHHHHHHHHHHHCCC-eEEEEeCCCCCCccccceeccchhceeccCCccccCcchhcccccceeecc
Confidence 4567999999999999999999999999 7999999999999999976544 11 34444443321
Q ss_pred CC----CCCHHHHHHHHcCCceeecccccccceEEecCCcccc--HHHHHHHH----H--HHHHhHHHHHHHhhhccCC-
Q 013178 88 GP----KSSPSLQIAKKIKLKTFYSDYANLTSNIYKQDGGLYQ--KHVVESAV----R--IAKTRDAFCTNLSKMLSSE- 154 (448)
Q Consensus 88 ~~----~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~- 154 (448)
++ ....+.++++++|+..+...........+. +|+.++ ......+. . ....+.++...+.......
T Consensus 87 ~P~~l~~~~~l~~ll~~lg~~~~l~~~~~~~~~~~~-~g~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p 165 (453)
T 2bcg_G 87 IPKFLMANGELTNILIHTDVTRYVDFKQVSGSYVFK-QGKIYKVPANEIEAISSPLMGIFEKRRMKKFLEWISSYKEDDL 165 (453)
T ss_dssp SCCBEETTSHHHHHHHHHTGGGTCCEEECCCEEEEE-TTEEEECCSSHHHHHHCTTSCHHHHHHHHHHHHHHHHCBTTBG
T ss_pred ccceeecCcHHHHHHHhcCCccceEEEEccceeEEe-CCeEEECCCChHHHHhhhccchhhHHHHHHHHHHHHHhccCCc
Confidence 11 346889999999986543221111222333 555433 11011100 0 0011122222222111100
Q ss_pred ----CCCCCcccHHHHHHhhcCCCCChHHHHHHHHhhcc---ccCCCcccccccccCCC-cccccCCCCeeeeeCCCchH
Q 013178 155 ----TTRDDDTSILGSQRLLKEVPMTPLEMAIDYFFNDY---EDAEPPRITSLKTTYPR-NQLVDFGEDSYFVADPRGFE 226 (448)
Q Consensus 155 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~s~~~~~~~-~~~~~~~~~~~~~~~~~G~~ 226 (448)
.......++.++.+ ++........++....... .+...+...++..+... .....++. ..+..+.+|++
T Consensus 166 ~~~~~~~~~~~s~~~~l~--~~~~~~~l~~~l~~~~~l~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~-~~~~~p~gG~~ 242 (453)
T 2bcg_G 166 STHQGLDLDKNTMDEVYY--KFGLGNSTKEFIGHAMALWTNDDYLQQPARPSFERILLYCQSVARYGK-SPYLYPMYGLG 242 (453)
T ss_dssp GGSTTCCTTTSBHHHHHH--HTTCCHHHHHHHHHHTSCCSSSGGGGSBHHHHHHHHHHHHHHHHHHSS-CSEEEETTCTT
T ss_pred hhhhccccccCCHHHHHH--HhCCCHHHHHHHHHHHHhccCccccCCchHHHHHHHHHHHHHHHhhcC-CceEeeCCCHH
Confidence 00012344444322 1111111122221111100 01111111111000000 00011222 22335689999
Q ss_pred HHHHHHHHhhhcccccccCCCceecCceeEEEEec--CCcE-EEEeCCCcEEEeCEEEEeechh
Q 013178 227 SVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYS--KDKV-TVKTEDGSVYQANYAIVSVSIG 287 (448)
Q Consensus 227 ~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~--~~~v-~V~~~~g~~~~ad~VI~a~p~~ 287 (448)
.++++|++.+.+ .|++|+++++|++|..+ ++++ .|.+ +|++++||+||+|+++.
T Consensus 243 ~l~~al~~~~~~------~G~~i~~~~~V~~i~~~~~~~~~~~V~~-~g~~~~ad~VV~a~~~~ 299 (453)
T 2bcg_G 243 ELPQGFARLSAI------YGGTYMLDTPIDEVLYKKDTGKFEGVKT-KLGTFKAPLVIADPTYF 299 (453)
T ss_dssp HHHHHHHHHHHH------TTCEEECSCCCCEEEEETTTTEEEEEEE-TTEEEECSCEEECGGGC
T ss_pred HHHHHHHHHHHH------cCCEEECCCEEEEEEEECCCCeEEEEEE-CCeEEECCEEEECCCcc
Confidence 999999999876 69999999999999988 7775 4666 57789999999999864
No 30
>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A
Probab=99.81 E-value=3.2e-19 Score=173.63 Aligned_cols=245 Identities=15% Similarity=0.164 Sum_probs=144.1
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEEce-e--------------------CCceeeecce
Q 013178 24 SPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGN-I--------------------GGHTIELGAN 82 (448)
Q Consensus 24 ~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~~-~--------------------~g~~~d~G~~ 82 (448)
++.++||+|||||++||++|+.|+++|+ +|+|+|+++++||++.|.+ . .++.+|+|++
T Consensus 3 ~~~~~~v~iiG~G~~gl~~a~~l~~~g~-~v~~~e~~~~~gg~~~s~~~~~~g~~~~~~~~~~~~~~~~g~~~~~d~gP~ 81 (433)
T 1d5t_A 3 MDEEYDVIVLGTGLTECILSGIMSVNGK-KVLHMDRNPYYGGESSSITPLEELYKRFQLLEGPPETMGRGRDWNVDLIPK 81 (433)
T ss_dssp CCSBCSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSSSCTTSCEECSHHHHHHHTTCTTCCCGGGCCGGGCCEESSCC
T ss_pred CCCcCCEEEECcCHHHHHHHHHHHHCCC-cEEEEecCCCccccccccccHHHHHhhccCCCCChhHhcccCceEEccCcc
Confidence 4567899999999999999999999999 7999999999999999977 1 3467788888
Q ss_pred eccCCCCCCCHHHHHHHHcCCceeecccccccceEEecCCcccc--HHHHHHHH----H--HHHHhHHHHHHHhhhccCC
Q 013178 83 WVNSGGPKSSPSLQIAKKIKLKTFYSDYANLTSNIYKQDGGLYQ--KHVVESAV----R--IAKTRDAFCTNLSKMLSSE 154 (448)
Q Consensus 83 ~~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~ 154 (448)
++.. ...+.++++++|+..+...........+. +|+.+. ......+. . ....+.++...+.+ +...
T Consensus 82 ~l~~----~~~l~~ll~~lgl~~~l~~~~~~~~~~~~-~g~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~ 155 (433)
T 1d5t_A 82 FLMA----NGQLVKMLLYTEVTRYLDFKVVEGSFVYK-GGKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVAN-FDEN 155 (433)
T ss_dssp BEET----TSHHHHHHHHHTGGGGCCEEECCEEEEEE-TTEEEECCCSHHHHHHCSSSCHHHHHHHHHHHHHHHH-CCTT
T ss_pred eeec----cchHHHHHHHcCCccceEEEEeCceEEee-CCEEEECCCCHHHHhhCcccChhhHHHHHHHHHHHHh-hccc
Confidence 8765 35788999999987543221111222333 565432 11111100 0 00111222222221 1110
Q ss_pred C------CCCCcccHHHHHHhhcCCCCChHHHHHHHHhhcc-cc-CCCccccccc----ccCCCc-ccccCCCCeeeeeC
Q 013178 155 T------TRDDDTSILGSQRLLKEVPMTPLEMAIDYFFNDY-ED-AEPPRITSLK----TTYPRN-QLVDFGEDSYFVAD 221 (448)
Q Consensus 155 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~s~~----~~~~~~-~~~~~~~~~~~~~~ 221 (448)
. ......++.++.+ ++.... .+.+.+...+ .+ +..+...+.. .+.... ....++. ..+..+
T Consensus 156 ~p~~~~~~~~~~~s~~~~l~--~~~~~~---~l~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~~~g~-~~~~~p 229 (433)
T 1d5t_A 156 DPKTFEGVDPQNTSMRDVYR--KFDLGQ---DVIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARYGK-SPYLYP 229 (433)
T ss_dssp CGGGGTTCCTTTSBHHHHHH--HTTCCH---HHHHHHHHHTSCCSSSGGGGSBSHHHHHHHHHHHHSCCSSSC-CSEEEE
T ss_pred CchhccccccccCCHHHHHH--HcCCCH---HHHHHHHHHHHhccCCCccCCCHHHHHHHHHHHHHHHHhcCC-CcEEEe
Confidence 0 0113344444322 111111 2222222111 11 1122111111 000000 0111222 224456
Q ss_pred CCchHHHHHHHHHhhhcccccccCCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeechh
Q 013178 222 PRGFESVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSIG 287 (448)
Q Consensus 222 ~~G~~~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~ 287 (448)
.+|++.++++|++.+.+ .|++|+++++|++|..+++++.+...+|++++||+||+|+|+.
T Consensus 230 ~gG~~~l~~~l~~~~~~------~G~~i~~~~~V~~I~~~~~~v~~v~~~g~~~~ad~VV~a~~~~ 289 (433)
T 1d5t_A 230 LYGLGELPQGFARLSAI------YGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICDPSYV 289 (433)
T ss_dssp TTCTTHHHHHHHHHHHH------HTCCCBCSCCCCEEEEETTEEEEEEETTEEEECSEEEECGGGC
T ss_pred CcCHHHHHHHHHHHHHH------cCCEEECCCEEEEEEEeCCEEEEEEECCeEEECCEEEECCCCC
Confidence 89999999999998876 5899999999999999888877444578789999999999875
No 31
>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}
Probab=99.79 E-value=6.2e-19 Score=170.76 Aligned_cols=250 Identities=16% Similarity=0.210 Sum_probs=147.2
Q ss_pred CCCCCCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEEceeC--------------------Cceeee
Q 013178 20 IAPTSPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNIG--------------------GHTIEL 79 (448)
Q Consensus 20 ~~~~~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~~~~--------------------g~~~d~ 79 (448)
+...+++.+||+|||+|++|+++|+.|+++|+ +|+|+|+++++||++.+...+ ++.+|+
T Consensus 13 ~~~~~~~~~dv~iiG~G~~g~~~a~~l~~~g~-~v~~~e~~~~~Gg~~~s~~~~~l~~~~~~g~~~~~~~g~~R~y~iDL 91 (475)
T 3p1w_A 13 NLYFQGEHYDVIILGTGLKECILSGLLSHYGK-KILVLDRNPYYGGETASLNLTNLYNTFKPKENIPSKYGENRHWNVDL 91 (475)
T ss_dssp ----CCCEEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSSSCGGGCEECHHHHHHHHCTTSCCCGGGCCGGGCCEES
T ss_pred ccccccccCCEEEECCCHHHHHHHHHHHHCCC-cEEEEeccCCCCCCccccchhhhhhhcccCCCcccccccccceEEee
Confidence 34566678999999999999999999999999 799999999999999886532 468899
Q ss_pred cceeccCCCCCCCHHHHHHHHcCCceeecccccccceEEe--------cCCcccc--HHHHHHH------HHHHHHhHHH
Q 013178 80 GANWVNSGGPKSSPSLQIAKKIKLKTFYSDYANLTSNIYK--------QDGGLYQ--KHVVESA------VRIAKTRDAF 143 (448)
Q Consensus 80 G~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~--------~~g~~~~--~~~~~~~------~~~~~~~~~~ 143 (448)
+++++.. ...+.+++.+.|+..+..+........+. .+|+.++ ......+ +..-..+..+
T Consensus 92 ~P~~l~~----~g~L~~lL~~~gv~~ylef~~~~~~y~~~~~~~~~~~~~g~~~~VPss~~e~~~~~lLs~~eK~~l~kF 167 (475)
T 3p1w_A 92 IPKFILV----GGNLVKILKKTRVTNYLEWLVVEGSYVYQHQKKGFLTSEKFIHKVPATDMEALVSPLLSLMEKNRCKNF 167 (475)
T ss_dssp SCCBEET----TSHHHHHHHHTTCGGGSCEEECSEEEEEEEECCCSSSCCEEEEECCCSHHHHHTCTTSCHHHHHHHHHH
T ss_pred cCeEeec----CcHHHHHHHHCCchheeEEEecCcceEEecCccccccCCCceEeCCCCHHHHhhccCCCHHHHHHHHHH
Confidence 9888865 56899999999998776544333223332 1333332 1111100 0000111222
Q ss_pred HHHHhhhccC-----CCCCCCcccHHHHHHhhcCCCCChHHHHHHHHhhccccCC--CcccccccccCCC---c--cccc
Q 013178 144 CTNLSKMLSS-----ETTRDDDTSILGSQRLLKEVPMTPLEMAIDYFFNDYEDAE--PPRITSLKTTYPR---N--QLVD 211 (448)
Q Consensus 144 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~~~~~~~---~--~~~~ 211 (448)
+..+.+.... ......+.++.++.+-.+. .+.+.+++........ +....++...+.. + .+..
T Consensus 168 L~~l~~~~~~~~~~~~~~~l~~~s~~e~l~~~gl-----s~~l~~fl~~alaL~~~~~~~~~~a~~~l~ri~~y~~Sl~~ 242 (475)
T 3p1w_A 168 YQYVSEWDANKRNTWDNLDPYKLTMLEIYKHFNL-----CQLTIDFLGHAVALYLNDDYLKQPAYLTLERIKLYMQSISA 242 (475)
T ss_dssp HHHHHHCCTTCGGGSTTCCTTTSBHHHHHHHTTC-----CHHHHHHHHHHTSCCSSSGGGGSBHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhccchhhhcccccCCCHHHHHHHcCC-----CHHHHHHHHHHHHhhcCCCcccCCHHHHHHHHHHHHHHHhh
Confidence 2222111000 0001134555554332221 1222233322211111 1111222211111 0 1122
Q ss_pred CCCCeeeeeCCCchHHHHHHHHHhhhcccccccCCCceecCceeEEEEe-cCCcE-EEEeCCCcEEEeCEEEEeech
Q 013178 212 FGEDSYFVADPRGFESVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISY-SKDKV-TVKTEDGSVYQANYAIVSVSI 286 (448)
Q Consensus 212 ~~~~~~~~~~~~G~~~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~-~~~~v-~V~~~~g~~~~ad~VI~a~p~ 286 (448)
++ ...+.++++|++.|+++|++.+.. .|++|+++++|++|.. +++++ .|.+.+|++++||+||+++..
T Consensus 243 yg-~s~~~yp~gG~~~L~~aL~r~~~~------~Gg~i~l~t~V~~I~~d~~g~v~gV~~~~G~~i~Ad~VI~a~~~ 312 (475)
T 3p1w_A 243 FG-KSPFIYPLYGLGGIPEGFSRMCAI------NGGTFMLNKNVVDFVFDDDNKVCGIKSSDGEIAYCDKVICDPSY 312 (475)
T ss_dssp HS-SCSEEEETTCTTHHHHHHHHHHHH------C--CEESSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECGGG
T ss_pred cC-CCceEEECCCHHHHHHHHHHHHHH------cCCEEEeCCeEEEEEEecCCeEEEEEECCCcEEECCEEEECCCc
Confidence 33 223446789999999999999877 6999999999999998 66664 588999988999999999853
No 32
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7
Probab=99.79 E-value=1.2e-19 Score=172.62 Aligned_cols=248 Identities=13% Similarity=0.115 Sum_probs=153.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEEceeCCceee-ecceeccCCCCCCCHHHHHHHHcCCce
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNIGGHTIE-LGANWVNSGGPKSSPSLQIAKKIKLKT 105 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~~~~g~~~d-~G~~~~~~~~~~~~~~~~l~~~lgl~~ 105 (448)
++||+|||||++||+||++|+++|+ +|+|+|+++++||++.+...+|..++ .|+++++. .+..+++++++++...
T Consensus 1 ~~~v~iiG~G~~Gl~~A~~l~~~g~-~v~v~E~~~~~GG~~~~~~~~g~~~~~~G~~~~~~---~~~~~~~~~~~l~~~~ 76 (367)
T 1i8t_A 1 MYDYIIVGSGLFGAVCANELKKLNK-KVLVIEKRNHIGGNAYTEDCEGIQIHKYGAHIFHT---NDKYIWDYVNDLVEFN 76 (367)
T ss_dssp CEEEEEECCSHHHHHHHHHHGGGTC-CEEEECSSSSSSGGGCEEEETTEEEETTSCCCEEE---SCHHHHHHHHTTSCBC
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCC-cEEEEecCCCCCcceEeeccCCceeeccCCceecC---CCHHHHHHHHHhhhhh
Confidence 3699999999999999999999999 79999999999999999888898885 99999988 6678899999988643
Q ss_pred eecccccccceEEecCCccccH--H--HHHHHHHH--HHHhHHHHHHHhhhccCCCCCCCcccHHHHHHhhcCCCCChHH
Q 013178 106 FYSDYANLTSNIYKQDGGLYQK--H--VVESAVRI--AKTRDAFCTNLSKMLSSETTRDDDTSILGSQRLLKEVPMTPLE 179 (448)
Q Consensus 106 ~~~~~~~~~~~~~~~~g~~~~~--~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (448)
... .. ...+. +|+.++. + .+..+... ......+........ . ..++.++.++..-. ..+
T Consensus 77 ~~~---~~-~~~~~-~g~~~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~---~-~~~~~s~~~~~~~~------~g~ 141 (367)
T 1i8t_A 77 RFT---NS-PLAIY-KDKLFNLPFNMNTFHQMWGVKDPQEAQNIINAQKKKY---G-DKVPENLEEQAISL------VGE 141 (367)
T ss_dssp CCC---CC-CEEEE-TTEEEESSBSHHHHHHHHCCCCHHHHHHHHHHHTTTT---C-CCCCCSHHHHHHHH------HHH
T ss_pred hcc---cc-ceEEE-CCeEEEcCCCHHHHHHHhccCCHHHHHHHHHHHhhcc---C-CCCCccHHHHHHHH------HhH
Confidence 221 11 12333 5654432 1 11111100 011112222221111 1 11344554442111 011
Q ss_pred HHHHHHhhc---cccCCCcccccccccC--CCccccc--CCCCeeeeeCCCchHHHHHHHHHhhhcccccccCCCceecC
Q 013178 180 MAIDYFFND---YEDAEPPRITSLKTTY--PRNQLVD--FGEDSYFVADPRGFESVVHSVAKQFLSHRHQVIRDPRLKLN 252 (448)
Q Consensus 180 ~~~~~~~~~---~~~~~~~~~~s~~~~~--~~~~~~~--~~~~~~~~~~~~G~~~l~~~l~~~l~~~~~~~~~g~~i~~~ 252 (448)
.+.+.+... ..++.+++..++..+. +...... +....+...+++|++.++++|++. ++|++|
T Consensus 142 ~~~~~~~~p~~~~~~~~~~~~lsa~~~~~l~~~~~~~~~~~~~~~~~~p~gG~~~l~~~l~~g-----------~~i~l~ 210 (367)
T 1i8t_A 142 DLYQALIKGYTEKQWGRSAKELPAFIIKRIPVRFTFDNNYFSDRYQGIPVGGYTKLIEKMLEG-----------VDVKLG 210 (367)
T ss_dssp HHHHHHTHHHHHHHHSSCGGGSCTTSSCCCCBCSSSCCCSCCCSEEECBTTCHHHHHHHHHTT-----------SEEECS
T ss_pred HHHHHHHHHHHhhhhCCChHHcCHHHHhhceeeeccccccccchhhcccCCCHHHHHHHHhcC-----------CEEEeC
Confidence 111211111 1256677766655431 1111001 112222236789999999999863 479999
Q ss_pred ceeEEEEecCCcEEEEeCCCcEEEeCEEEEeechhhccCCCccccCCCCHHHHHHHhhcCCcceeEEEEEcCCCCCC
Q 013178 253 KVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSIGVLQSDFIEFTPNLPLWKKLAINNFNMAIYTKIFMKFPYKFWP 329 (448)
Q Consensus 253 ~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~p~l~~~~~~~~~~~~~~~~~~v~l~~~~~~w~ 329 (448)
++|++|+.. | .+.||+||+|+|+..+.+. .+.+++|.+...+.+.++.+.++
T Consensus 211 ~~V~~i~~~---v--------~~~~D~VV~a~p~~~~~~~--------------~l~~l~y~s~~~v~~~~d~~~~~ 262 (367)
T 1i8t_A 211 IDFLKDKDS---L--------ASKAHRIIYTGPIDQYFDY--------------RFGALEYRSLKFETERHEFPNFQ 262 (367)
T ss_dssp CCGGGSHHH---H--------HTTEEEEEECSCHHHHTTT--------------TTCCCCEEEEEEEEEEESSSCSS
T ss_pred Cceeeechh---h--------hccCCEEEEeccHHHHHHH--------------hhCCCCCceEEEEEEEeccccCC
Confidence 999988632 2 2469999999999887541 14578899999999999877553
No 33
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Probab=99.78 E-value=3.1e-19 Score=170.73 Aligned_cols=246 Identities=12% Similarity=0.140 Sum_probs=150.5
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEEcee--CCcee-eecceeccCCCCCCCHHHHHHHHcCC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNI--GGHTI-ELGANWVNSGGPKSSPSLQIAKKIKL 103 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~~~--~g~~~-d~G~~~~~~~~~~~~~~~~l~~~lgl 103 (448)
++||+|||||++||++|+.|+++|+ +|+|+|+++++||++.+... .|..+ |.|+++++. .++.++++++++|.
T Consensus 3 ~~~v~iiG~G~~Gl~~A~~l~~~g~-~v~v~E~~~~~GG~~~~~~~~~~g~~~~~~G~~~~~~---~~~~~~~~~~~l~~ 78 (384)
T 2bi7_A 3 SKKILIVGAGFSGAVIGRQLAEKGH-QVHIIDQRDHIGGNSYDARDSETNVMVHVYGPHIFHT---DNETVWNYVNKHAE 78 (384)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTC-EEEEEESSSSSSGGGCEEECTTTCCEEETTSCCCEEE---SCHHHHHHHHTTSC
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCC-cEEEEEecCCcCCccccccccCCCceEeeCCceEECC---CCHHHHHHHHHHhh
Confidence 4799999999999999999999999 89999999999999999877 68876 899999998 77899999999986
Q ss_pred ceeecccccccceEEecCCcccc--HH--HHHHHHHHHHHhHHHHHHHhhhccCCCCCCCcccHHHHHHhhcCCCCChHH
Q 013178 104 KTFYSDYANLTSNIYKQDGGLYQ--KH--VVESAVRIAKTRDAFCTNLSKMLSSETTRDDDTSILGSQRLLKEVPMTPLE 179 (448)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~g~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (448)
.... ... ..++. +|+.++ .. .+..++.......+....+....... ..++.++.++..-. ......+
T Consensus 79 ~~~~---~~~-~~~~~-~g~~~~~P~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~--~~~~~sl~e~~~~~--~g~~~~~ 149 (384)
T 2bi7_A 79 MMPY---VNR-VKATV-NGQVFSLPINLHTINQFFSKTCSPDEARALIAEKGDST--IADPQTFEEEALRF--IGKELYE 149 (384)
T ss_dssp EEEC---CCC-EEEEE-TTEEEEESCCHHHHHHHTTCCCCHHHHHHHHHHHSCCS--CSSCCBHHHHHHHH--HCHHHHH
T ss_pred hccc---ccc-eEEEE-CCEEEECCCChhHHHHHhcccCCHHHHHHHHHHhhhcc--CCCCcCHHHHHHHh--hcHHHHH
Confidence 3211 111 12233 565433 11 11111100000001111111111111 11344555442211 1111111
Q ss_pred HHHHHHhhccccCCCccccccccc--CCCcc-cc-cCCCCeeeeeCCCchHHHHHHHHHhhhcccccccCCCceecCcee
Q 013178 180 MAIDYFFNDYEDAEPPRITSLKTT--YPRNQ-LV-DFGEDSYFVADPRGFESVVHSVAKQFLSHRHQVIRDPRLKLNKVV 255 (448)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~s~~~~--~~~~~-~~-~~~~~~~~~~~~~G~~~l~~~l~~~l~~~~~~~~~g~~i~~~~~V 255 (448)
.+...+. ...++.+++..++... ++... +. .+....+...+++|++.++++|++. .|++|++|++|
T Consensus 150 ~~~~p~~-~~~~~~~~~~ls~~~~~r~~~~~~~~~~~~~~~~~~~p~gG~~~l~~~l~~~---------~g~~I~l~~~V 219 (384)
T 2bi7_A 150 AFFKGYT-IKQWGMQPSELPASILKRLPVRFNYDDNYFNHKFQGMPKCGYTQMIKSILNH---------ENIKVDLQREF 219 (384)
T ss_dssp HHTHHHH-HHHHSSCGGGSBGGGCCSCCCCSSSCCCSCCCSEEEEETTHHHHHHHHHHCS---------TTEEEEESCCC
T ss_pred HHHHHHH-HHHhCCCHHHhCHHHHhccccccccccccccccccEEECcCHHHHHHHHHhc---------CCCEEEECCee
Confidence 1111111 1125666776665543 11100 11 1111222236689999999999985 47899999999
Q ss_pred E-EEEecCCcEEEEeCCCcEEEeCEEEEeechhhccCCCccccCCCCHHHHHHHhhcCCcceeEEEEEcC
Q 013178 256 R-NISYSKDKVTVKTEDGSVYQANYAIVSVSIGVLQSDFIEFTPNLPLWKKLAINNFNMAIYTKIFMKFP 324 (448)
Q Consensus 256 ~-~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~l~~~~~~~~p~l~~~~~~~~~~~~~~~~~~v~l~~~ 324 (448)
+ +|+. +||+||+|+|++.+.++ .+.+++|.+...+.+.++
T Consensus 220 ~~~i~~---------------~~d~VI~a~p~~~~~~~--------------~lg~l~y~s~~~v~~~~d 260 (384)
T 2bi7_A 220 IVEERT---------------HYDHVFYSGPLDAFYGY--------------QYGRLGYRTLDFKKFTYQ 260 (384)
T ss_dssp CGGGGG---------------GSSEEEECSCHHHHTTT--------------TTCCCCEEEEEEEEEEEE
T ss_pred ehhhhc---------------cCCEEEEcCCHHHHHHh--------------hcCCCCcceEEEEEEEeC
Confidence 9 7753 29999999999988652 145688998888888886
No 34
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=99.59 E-value=3.6e-13 Score=123.22 Aligned_cols=60 Identities=25% Similarity=0.536 Sum_probs=55.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEEceeCCceeeecceeccC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNIGGHTIELGANWVNS 86 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~ 86 (448)
+++||+|||||+|||+||+.|+++|+ +|+||||++++||++.+....+..+|.|+.++..
T Consensus 1 Mt~dV~IIGaGpaGL~aA~~La~~G~-~V~v~Ek~~~~GG~~~~~~~~~~~~d~g~~~~~~ 60 (336)
T 3kkj_A 1 MTVPIAIIGTGIAGLSAAQALTAAGH-QVHLFDKSRGSGGRMSSKRSDAGALDMGAQYFTA 60 (336)
T ss_dssp -CCCEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSSSCGGGCEEEETTEEEECSCCCBCC
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCCCCCCcccccccCCceeecCcccccc
Confidence 46899999999999999999999999 7999999999999999999999999999888765
No 35
>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*
Probab=99.53 E-value=3.8e-12 Score=126.89 Aligned_cols=91 Identities=11% Similarity=0.003 Sum_probs=67.1
Q ss_pred eeeeCCCchHHHHHHHHHhhhcccccccCCCceecCceeEEEEecC--CcEE-EEeCCCcEEEeCEEEEeechhhccCCC
Q 013178 217 YFVADPRGFESVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSK--DKVT-VKTEDGSVYQANYAIVSVSIGVLQSDF 293 (448)
Q Consensus 217 ~~~~~~~G~~~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~--~~v~-V~~~~g~~~~ad~VI~a~p~~~l~~~~ 293 (448)
.+.++.+|++.|+++|++.+.. .|++|+++++|++|..++ +++. |.+.+|++++||+||++. ..+.
T Consensus 369 g~~yp~GG~g~L~qaL~r~~~~------~Gg~i~l~~~V~~I~~~~~~g~v~gV~~~~Ge~i~A~~VVs~~--~~lp--- 437 (650)
T 1vg0_A 369 PFLFPLYGQGELPQCFCRMCAV------FGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIED--SYLS--- 437 (650)
T ss_dssp SEEEETTCTTHHHHHHHHHHHH------TTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEEG--GGBC---
T ss_pred ceEEeCCchhHHHHHHHHHHHH------cCCEEEeCCEeeEEEEeCCCCeEEEEEeCCCCEEEcCEEEECh--hhcC---
Confidence 3445689999999999998877 699999999999999877 6665 556779999999999832 2221
Q ss_pred ccccCCCCHHHHHHHhhcCCcceeEEEEEcCCCCCC
Q 013178 294 IEFTPNLPLWKKLAINNFNMAIYTKIFMKFPYKFWP 329 (448)
Q Consensus 294 ~~~~p~l~~~~~~~~~~~~~~~~~~v~l~~~~~~w~ 329 (448)
+.. .+++++..+.++++.++.+.-.
T Consensus 438 --------~~~---~~~~~~~~v~R~i~i~~~pi~~ 462 (650)
T 1vg0_A 438 --------ENT---CSRVQYRQISRAVLITDGSVLR 462 (650)
T ss_dssp --------TTT---TTTCCCEEEEEEEEEESSCSSC
T ss_pred --------HhH---hccccccceEEEEEEecCCCCC
Confidence 111 1223456788888888876543
No 36
>2e1m_C L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Probab=99.47 E-value=5.7e-14 Score=118.57 Aligned_cols=104 Identities=8% Similarity=0.009 Sum_probs=86.1
Q ss_pred CCccccccccccc-CCCC-cEEEEEecchhhhhhhcCChHHHHHHHHHHHHHHHhCCCCCCCceE--eeccCCCCCCCCc
Q 013178 344 RGYFPIWQHLENE-MPGS-NILFVTVTDEESRRVERQSDEKTKAEIMNNVLRKLFGNKIPEPQSI--FVPRWWSNRFFNG 419 (448)
Q Consensus 344 ~~~~~~~~~~~~~-~~~~-~~l~~~~~~~~a~~~~~~~~~e~~~~~~~~~L~~~~g~~~~~~~~~--~~~~W~~~~~~~g 419 (448)
..+..+|+++... .++. .+|++|++++.+..+..++++|+++.++ ++|+++||+....+..+ ..++|.++||+.|
T Consensus 18 ~pi~~i~d~S~~~~~~g~~~~L~~~~~g~~A~~~~~l~~~e~~~~~l-~~L~~~~g~~~~~~~~~~~~~~~W~~dp~~~G 96 (181)
T 2e1m_C 18 NPNRFMYYPSHPVPGTQGGVVLAAYSWSDDAARWDSFDDAERYGYAL-ENLQSVHGRRIEVFYTGAGQTQSWLRDPYACG 96 (181)
T ss_dssp STTBEEECCSSCCTTCSCEEEEEEEEEHHHHHHHTTSCTTTTHHHHH-HHHHHHHCGGGGGTEEEEEEEEESSSCTTTSS
T ss_pred CCeEEEEECCCCcCCCCCCEEEEEEcCChHHHHHHcCCHHHHHHHHH-HHHHHHhCCCcHhhccCcceecccCCCCCCCC
Confidence 4566677765432 2333 4788888899999999999999999999 99999998766233367 8999999999999
Q ss_pred ccCCCCCCCCHHHHHHHhcccCceEEccC
Q 013178 420 SYSNWPNGFTQQSYKELKVSICKLHVGLT 448 (448)
Q Consensus 420 ~~~~~~~g~~~~~~~~~~~p~~~i~fAG~ 448 (448)
+|++++||+...+++.+++|.+||||||+
T Consensus 97 a~s~~~pg~~~~~~~~l~~p~grl~FAGe 125 (181)
T 2e1m_C 97 EAAVYTPHQMTAFHLDVVRPEGPVYFAGE 125 (181)
T ss_dssp SEECCCTTHHHHHHHHHHSCBTTEEECSG
T ss_pred cccCcCCCchHHHHHHHhCCCCcEEEEEH
Confidence 99999999987788999999999999995
No 37
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*
Probab=99.43 E-value=3.1e-13 Score=129.33 Aligned_cols=56 Identities=11% Similarity=0.124 Sum_probs=48.5
Q ss_pred hHHHHHHHHHhhhcccccccCCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeechh
Q 013178 225 FESVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSIG 287 (448)
Q Consensus 225 ~~~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~ 287 (448)
...+...|.+.+.+ .|++|+++++|++|+.+++++.|.+.+| +++||+||+|+...
T Consensus 153 ~~~~~~~l~~~a~~------~Gv~i~~~~~V~~i~~~~~~~~V~t~~g-~i~a~~VV~A~G~~ 208 (381)
T 3nyc_A 153 TDALHQGYLRGIRR------NQGQVLCNHEALEIRRVDGAWEVRCDAG-SYRAAVLVNAAGAW 208 (381)
T ss_dssp HHHHHHHHHHHHHH------TTCEEESSCCCCEEEEETTEEEEECSSE-EEEESEEEECCGGG
T ss_pred HHHHHHHHHHHHHH------CCCEEEcCCEEEEEEEeCCeEEEEeCCC-EEEcCEEEECCChh
Confidence 35677788887766 5999999999999999988899999888 89999999999754
No 38
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}
Probab=99.42 E-value=9e-13 Score=125.46 Aligned_cols=57 Identities=5% Similarity=-0.007 Sum_probs=48.2
Q ss_pred hHHHHHHHHHhhhcccccccCCCceecCceeEEEEecCCc-EEEEeCCC--cEEEeCEEEEeechh
Q 013178 225 FESVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDK-VTVKTEDG--SVYQANYAIVSVSIG 287 (448)
Q Consensus 225 ~~~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~-v~V~~~~g--~~~~ad~VI~a~p~~ 287 (448)
...+...|.+.+.+ .|++|+++++|++|+.++++ +.|.+.+| .+++||+||+|+...
T Consensus 149 ~~~~~~~l~~~~~~------~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~a~~VV~A~G~~ 208 (369)
T 3dme_A 149 SHALMLAYQGDAES------DGAQLVFHTPLIAGRVRPEGGFELDFGGAEPMTLSCRVLINAAGLH 208 (369)
T ss_dssp HHHHHHHHHHHHHH------TTCEEECSCCEEEEEECTTSSEEEEECTTSCEEEEEEEEEECCGGG
T ss_pred HHHHHHHHHHHHHH------CCCEEECCCEEEEEEEcCCceEEEEECCCceeEEEeCEEEECCCcc
Confidence 45677888887766 69999999999999998766 88988888 489999999999764
No 39
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}
Probab=99.41 E-value=5.8e-13 Score=128.27 Aligned_cols=58 Identities=12% Similarity=0.205 Sum_probs=49.6
Q ss_pred CchHHHHHHHHHhhhcccccccCCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeechh
Q 013178 223 RGFESVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSIG 287 (448)
Q Consensus 223 ~G~~~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~ 287 (448)
.....+.+.|.+.+.+ .|++|+++++|++|..+++++.|.+.+| +++||+||+|+...
T Consensus 129 ~~~~~l~~~L~~~l~~------~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~VIlAtG~~ 186 (417)
T 3v76_A 129 HSAKDIIRMLMAEMKE------AGVQLRLETSIGEVERTASGFRVTTSAG-TVDAASLVVASGGK 186 (417)
T ss_dssp SCHHHHHHHHHHHHHH------HTCEEECSCCEEEEEEETTEEEEEETTE-EEEESEEEECCCCS
T ss_pred CCHHHHHHHHHHHHHH------CCCEEEECCEEEEEEEeCCEEEEEECCc-EEEeeEEEECCCCc
Confidence 4456777888887765 5899999999999999888899999888 99999999998654
No 40
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*
Probab=99.38 E-value=2.1e-11 Score=125.38 Aligned_cols=56 Identities=7% Similarity=0.029 Sum_probs=49.2
Q ss_pred HHHHHHHHHhhhcccccccCCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeechh
Q 013178 226 ESVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSIG 287 (448)
Q Consensus 226 ~~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~ 287 (448)
..+...|.+.+.+ .|++|+++++|++|..++++|.|.+.+|.+++||.||+|+...
T Consensus 417 ~~l~~aL~~~a~~------~Gv~i~~~t~V~~l~~~~~~v~V~t~~G~~i~Ad~VVlAtG~~ 472 (676)
T 3ps9_A 417 AELTRNVLELAQQ------QGLQIYYQYQLQNFSRKDDCWLLNFAGDQQATHSVVVLANGHQ 472 (676)
T ss_dssp HHHHHHHHHHHHH------TTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECCGGG
T ss_pred HHHHHHHHHHHHh------CCCEEEeCCeeeEEEEeCCeEEEEECCCCEEECCEEEECCCcc
Confidence 5677778777765 5999999999999999998999999888799999999999765
No 41
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Probab=99.37 E-value=2.3e-12 Score=125.73 Aligned_cols=58 Identities=12% Similarity=0.237 Sum_probs=49.9
Q ss_pred hHHHHHHHHHhhhcccccccCCCceecCc---eeEEEEecCCcEE-EEeCCCcEEEeCEEEEeechhh
Q 013178 225 FESVVHSVAKQFLSHRHQVIRDPRLKLNK---VVRNISYSKDKVT-VKTEDGSVYQANYAIVSVSIGV 288 (448)
Q Consensus 225 ~~~l~~~l~~~l~~~~~~~~~g~~i~~~~---~V~~I~~~~~~v~-V~~~~g~~~~ad~VI~a~p~~~ 288 (448)
...+...|.+.+.+ .|++|++++ +|++|..++++|. |.+.+|++++||+||+|+....
T Consensus 160 ~~~~~~~L~~~a~~------~Gv~i~~~t~~~~V~~i~~~~~~v~gV~t~~G~~i~Ad~VV~AtG~~s 221 (438)
T 3dje_A 160 ARNALVAAAREAQR------MGVKFVTGTPQGRVVTLIFENNDVKGAVTADGKIWRAERTFLCAGASA 221 (438)
T ss_dssp HHHHHHHHHHHHHH------TTCEEEESTTTTCEEEEEEETTEEEEEEETTTEEEECSEEEECCGGGG
T ss_pred HHHHHHHHHHHHHh------cCCEEEeCCcCceEEEEEecCCeEEEEEECCCCEEECCEEEECCCCCh
Confidence 45677788887766 699999999 9999999888888 9999998899999999997653
No 42
>2e1m_B L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Probab=99.34 E-value=3.8e-14 Score=110.91 Aligned_cols=105 Identities=15% Similarity=0.243 Sum_probs=69.0
Q ss_pred cEEEeCEEEEeechhhccCCCccccCCCCHHHHHHHhhcCCcceeEEEEEcCCCCCCCCCCcceEEEecccCCccccccc
Q 013178 273 SVYQANYAIVSVSIGVLQSDFIEFTPNLPLWKKLAINNFNMAIYTKIFMKFPYKFWPTGPGTEFFIYAHERRGYFPIWQH 352 (448)
Q Consensus 273 ~~~~ad~VI~a~p~~~l~~~~~~~~p~l~~~~~~~~~~~~~~~~~~v~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 352 (448)
++++||+||+|+|+++++. +.|.|+||+.+.+++++++|++..|+++.|+++||+++ ... . +..
T Consensus 4 ~~~~Ad~VIvTvP~~vL~~--I~F~P~LP~~k~~Ai~~l~~g~~~Kv~l~f~~~FW~~~--~~~--g---d~s------- 67 (130)
T 2e1m_B 4 QTWTGDLAIVTIPFSSLRF--VKVTPPFSYKKRRAVIETHYDQATKVLLEFSRRWWEFT--EAD--W---KRE------- 67 (130)
T ss_dssp EEEEESEEEECSCHHHHTT--SEEESCCCHHHHHHHHHCCEECEEEEEEEESSCGGGCC--HHH--H---HHH-------
T ss_pred eEEEcCEEEEcCCHHHHhc--CcCCCCCCHHHHHHHHhCCCcceeEEEEEECCCCCCCC--Ccc--c---ccc-------
Confidence 3789999999999999997 88999999999999999999999999999999999872 110 0 000
Q ss_pred ccccCCCCcEEEEEe-cchhhhhhhcCChHHHHHHHHHHHHHHHhC
Q 013178 353 LENEMPGSNILFVTV-TDEESRRVERQSDEKTKAEIMNNVLRKLFG 397 (448)
Q Consensus 353 ~~~~~~~~~~l~~~~-~~~~a~~~~~~~~~e~~~~~~~~~L~~~~g 397 (448)
.. +...+++++|+ +|+++..|..+++ |..+.++ ..|.++++
T Consensus 68 ~~--~~~pg~l~~f~~wg~~A~~~~~l~~-~~r~~~~-~~l~~~~p 109 (130)
T 2e1m_B 68 LD--AIAPGLYDYYQQWGEDDAEAALALP-QSVRNLP-TGLLGAHP 109 (130)
T ss_dssp HH--HHSTTHHHHHHHHCCCSCCCC---------------------
T ss_pred CC--CCCCeEEEEecccCHHHHHHhcCCH-HHHHHHH-HHHHHhCC
Confidence 00 11234888888 5999999999977 6777888 88999985
No 43
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2
Probab=99.33 E-value=1.9e-11 Score=117.55 Aligned_cols=55 Identities=20% Similarity=0.280 Sum_probs=46.4
Q ss_pred HHHHHHHHHhhhcccccccCCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeechhh
Q 013178 226 ESVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSIGV 288 (448)
Q Consensus 226 ~~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~ 288 (448)
..+.+.|.+.+ .|++|+++++|++|+.+++++.|++.+|++++||.||.|...+.
T Consensus 99 ~~l~~~L~~~~--------~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S 153 (397)
T 2vou_A 99 DSIYGGLYELF--------GPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGAS 153 (397)
T ss_dssp HHHHHHHHHHH--------CSTTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCTTC
T ss_pred HHHHHHHHHhC--------CCcEEEcCCEEEEEEecCCEEEEEECCCCEEECCEEEECCCcch
Confidence 45566666665 47899999999999999889999999998999999999987653
No 44
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*
Probab=99.33 E-value=6.2e-11 Score=121.97 Aligned_cols=57 Identities=4% Similarity=0.003 Sum_probs=48.6
Q ss_pred hHHHHHHHHHhhhcccccccCCCceecCceeEEEEecCCcEEEEeCCCc-EEEeCEEEEeechh
Q 013178 225 FESVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVTVKTEDGS-VYQANYAIVSVSIG 287 (448)
Q Consensus 225 ~~~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~g~-~~~ad~VI~a~p~~ 287 (448)
...+...|.+.+.+ .|++|+++++|++|..++++|.|.+.+|. +++||.||+|+...
T Consensus 411 p~~l~~aL~~~a~~------~Gv~i~~~t~V~~l~~~~~~v~V~t~~G~~~i~Ad~VVlAtG~~ 468 (689)
T 3pvc_A 411 PSDLTHALMMLAQQ------NGMTCHYQHELQRLKRIDSQWQLTFGQSQAAKHHATVILATGHR 468 (689)
T ss_dssp HHHHHHHHHHHHHH------TTCEEEESCCEEEEEECSSSEEEEEC-CCCCEEESEEEECCGGG
T ss_pred HHHHHHHHHHHHHh------CCCEEEeCCeEeEEEEeCCeEEEEeCCCcEEEECCEEEECCCcc
Confidence 35677788877766 59999999999999999888999998887 89999999999865
No 45
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1
Probab=99.31 E-value=6.6e-12 Score=120.44 Aligned_cols=55 Identities=15% Similarity=0.176 Sum_probs=45.1
Q ss_pred hHHHHHHHHHhhhcccccccCCCceecCceeEEEEec----CCcEEEEeCCCcEEEeCEEEEeech
Q 013178 225 FESVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYS----KDKVTVKTEDGSVYQANYAIVSVSI 286 (448)
Q Consensus 225 ~~~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~----~~~v~V~~~~g~~~~ad~VI~a~p~ 286 (448)
...+.+.|.+.+.+ .|++|+++++|++|..+ ++++.|.+.+| +++||+||+|+..
T Consensus 108 ~~~l~~~L~~~~~~------~Gv~i~~~~~v~~i~~~~~g~~~~~~v~~~~g-~i~ad~VVlAtG~ 166 (401)
T 2gqf_A 108 AEQIVEMLKSECDK------YGAKILLRSEVSQVERIQNDEKVRFVLQVNST-QWQCKNLIVATGG 166 (401)
T ss_dssp THHHHHHHHHHHHH------HTCEEECSCCEEEEEECCSCSSCCEEEEETTE-EEEESEEEECCCC
T ss_pred HHHHHHHHHHHHHH------CCCEEEeCCEEEEEEcccCcCCCeEEEEECCC-EEECCEEEECCCC
Confidence 45566777777655 58999999999999977 56788988877 8999999999953
No 46
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*
Probab=99.31 E-value=2.4e-11 Score=117.30 Aligned_cols=55 Identities=18% Similarity=0.142 Sum_probs=45.4
Q ss_pred HHHHHHHHHhhhcccccccCCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeechhh
Q 013178 226 ESVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSIGV 288 (448)
Q Consensus 226 ~~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~ 288 (448)
..+...|.+.+. .++|+++++|++|+.++++|.|++.+|++++||.||.|.....
T Consensus 127 ~~l~~~L~~~~~--------~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~S 181 (407)
T 3rp8_A 127 AELQREMLDYWG--------RDSVQFGKRVTRCEEDADGVTVWFTDGSSASGDLLIAADGSHS 181 (407)
T ss_dssp HHHHHHHHHHHC--------GGGEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECCCTTC
T ss_pred HHHHHHHHHhCC--------cCEEEECCEEEEEEecCCcEEEEEcCCCEEeeCEEEECCCcCh
Confidence 345566666653 2589999999999999999999999999999999999987653
No 47
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=99.30 E-value=1.3e-11 Score=118.22 Aligned_cols=56 Identities=13% Similarity=0.124 Sum_probs=47.3
Q ss_pred hHHHHHHHHHhhhcccccccCCCceecCceeEEEEecCCcEE-EEeCCCcEEEeCEEEEeechh
Q 013178 225 FESVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVT-VKTEDGSVYQANYAIVSVSIG 287 (448)
Q Consensus 225 ~~~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~-V~~~~g~~~~ad~VI~a~p~~ 287 (448)
...+...|.+.+.+ .|++|+++++|++|+.+++++. |.+.+| +++||+||+|+...
T Consensus 148 ~~~l~~~l~~~~~~------~Gv~i~~~~~v~~i~~~~~~v~gv~~~~g-~i~a~~VV~A~G~~ 204 (382)
T 1y56_B 148 PFEATTAFAVKAKE------YGAKLLEYTEVKGFLIENNEIKGVKTNKG-IIKTGIVVNATNAW 204 (382)
T ss_dssp HHHHHHHHHHHHHH------TTCEEECSCCEEEEEESSSBEEEEEETTE-EEECSEEEECCGGG
T ss_pred HHHHHHHHHHHHHH------CCCEEECCceEEEEEEECCEEEEEEECCc-EEECCEEEECcchh
Confidence 35677777777765 5899999999999999888887 888888 89999999999754
No 48
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Probab=99.29 E-value=3.2e-11 Score=114.97 Aligned_cols=56 Identities=30% Similarity=0.266 Sum_probs=47.1
Q ss_pred HHHHHHHHHhhhcccccccCCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeechhh
Q 013178 226 ESVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSIGV 288 (448)
Q Consensus 226 ~~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~ 288 (448)
..+...|.+.+.+ .|++|+++++|++|+.+++++.|.+.+| +++||+||+|+....
T Consensus 149 ~~l~~~l~~~~~~------~G~~i~~~~~V~~i~~~~~~~~v~~~~g-~~~a~~vV~a~G~~s 204 (372)
T 2uzz_A 149 ELAIKTWIQLAKE------AGCAQLFNCPVTAIRHDDDGVTIETADG-EYQAKKAIVCAGTWV 204 (372)
T ss_dssp HHHHHHHHHHHHH------TTCEEECSCCEEEEEECSSSEEEEESSC-EEEEEEEEECCGGGG
T ss_pred HHHHHHHHHHHHH------CCCEEEcCCEEEEEEEcCCEEEEEECCC-eEEcCEEEEcCCccH
Confidence 4567777777665 5899999999999999888899999888 699999999998643
No 49
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*
Probab=99.26 E-value=8.9e-11 Score=112.90 Aligned_cols=54 Identities=17% Similarity=0.280 Sum_probs=45.3
Q ss_pred HHHHHHHHHhhhcccccccCCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeech
Q 013178 226 ESVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSI 286 (448)
Q Consensus 226 ~~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~ 286 (448)
..+...|.+.+.+ .|++|+++++|++|+.++++|.|.+.+| +++||.||+|+..
T Consensus 153 ~~~~~~l~~~a~~------~Gv~i~~~~~V~~i~~~~~~v~v~t~~g-~i~a~~VV~A~G~ 206 (397)
T 2oln_A 153 RGTLAALFTLAQA------AGATLRAGETVTELVPDADGVSVTTDRG-TYRAGKVVLACGP 206 (397)
T ss_dssp HHHHHHHHHHHHH------TTCEEEESCCEEEEEEETTEEEEEESSC-EEEEEEEEECCGG
T ss_pred HHHHHHHHHHHHH------cCCEEECCCEEEEEEEcCCeEEEEECCC-EEEcCEEEEcCCc
Confidence 4566677776655 5899999999999999888898988777 8999999999974
No 50
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Probab=99.26 E-value=4.6e-11 Score=114.24 Aligned_cols=55 Identities=16% Similarity=0.091 Sum_probs=47.1
Q ss_pred HHHHHHHHHhhhcccccccCCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeechh
Q 013178 226 ESVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSIG 287 (448)
Q Consensus 226 ~~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~ 287 (448)
..+...|.+.+.+ .|++|+++++|++|+.+++++.|.+.+| +++||.||+|+...
T Consensus 164 ~~~~~~l~~~~~~------~g~~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~ 218 (382)
T 1ryi_A 164 YFVCKAYVKAAKM------LGAEIFEHTPVLHVERDGEALFIKTPSG-DVWANHVVVASGVW 218 (382)
T ss_dssp HHHHHHHHHHHHH------TTCEEETTCCCCEEECSSSSEEEEETTE-EEEEEEEEECCGGG
T ss_pred HHHHHHHHHHHHH------CCCEEEcCCcEEEEEEECCEEEEEcCCc-eEEcCEEEECCChh
Confidence 5677777777765 5899999999999999888888888888 89999999999864
No 51
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1
Probab=99.25 E-value=2.9e-11 Score=118.01 Aligned_cols=57 Identities=21% Similarity=0.334 Sum_probs=47.9
Q ss_pred chHHHHHHHHHhhhcccccccCCCceecCceeEEEEecCCc-EEEEeCCCcEEEeCEEEEeech
Q 013178 224 GFESVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDK-VTVKTEDGSVYQANYAIVSVSI 286 (448)
Q Consensus 224 G~~~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~-v~V~~~~g~~~~ad~VI~a~p~ 286 (448)
....+.+.|.+.+.+ .|++|+++++|++|..++++ +.|.+.+|++++||.||+|+..
T Consensus 132 ~~~~l~~~L~~~~~~------~GV~i~~~~~V~~i~~~~~~v~~V~~~~G~~i~Ad~VVlAtGg 189 (447)
T 2i0z_A 132 KAQSVVDALLTRLKD------LGVKIRTNTPVETIEYENGQTKAVILQTGEVLETNHVVIAVGG 189 (447)
T ss_dssp CHHHHHHHHHHHHHH------TTCEEECSCCEEEEEEETTEEEEEEETTCCEEECSCEEECCCC
T ss_pred CHHHHHHHHHHHHHH------CCCEEEeCcEEEEEEecCCcEEEEEECCCCEEECCEEEECCCC
Confidence 346677888887766 58999999999999987777 6788888877999999999864
No 52
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*
Probab=99.25 E-value=5.5e-11 Score=114.41 Aligned_cols=56 Identities=11% Similarity=0.065 Sum_probs=45.8
Q ss_pred HHHHHHHHHhhhcccccccCCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeechhhc
Q 013178 226 ESVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSIGVL 289 (448)
Q Consensus 226 ~~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~l 289 (448)
..+.+.|.+.+ .+++|+++++|++|+.+++++.|++.+|++++||.||.|......
T Consensus 128 ~~l~~~L~~~~--------~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~ 183 (398)
T 2xdo_A 128 NDLRAILLNSL--------ENDTVIWDRKLVMLEPGKKKWTLTFENKPSETADLVILANGGMSK 183 (398)
T ss_dssp HHHHHHHHHTS--------CTTSEEESCCEEEEEECSSSEEEEETTSCCEEESEEEECSCTTCS
T ss_pred HHHHHHHHhhc--------CCCEEEECCEEEEEEECCCEEEEEECCCcEEecCEEEECCCcchh
Confidence 34556666665 246899999999999988889999999988999999999987644
No 53
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*
Probab=99.24 E-value=4.6e-11 Score=115.22 Aligned_cols=55 Identities=18% Similarity=0.111 Sum_probs=45.6
Q ss_pred HHHHHHHHHhhhcccccccCCCceecCceeEEEEecCCc-EEEEeCCCcEEEeCEEEEeechh
Q 013178 226 ESVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDK-VTVKTEDGSVYQANYAIVSVSIG 287 (448)
Q Consensus 226 ~~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~-v~V~~~~g~~~~ad~VI~a~p~~ 287 (448)
..+...|.+.+.+ .|++|+++++|++|..++++ +.|.+.+| +++||.||+|+...
T Consensus 174 ~~~~~~l~~~~~~------~g~~i~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~ 229 (405)
T 2gag_B 174 DHVAWAFARKANE------MGVDIIQNCEVTGFIKDGEKVTGVKTTRG-TIHAGKVALAGAGH 229 (405)
T ss_dssp HHHHHHHHHHHHH------TTCEEECSCCEEEEEESSSBEEEEEETTC-CEEEEEEEECCGGG
T ss_pred HHHHHHHHHHHHH------CCCEEEcCCeEEEEEEeCCEEEEEEeCCc-eEECCEEEECCchh
Confidence 4677777777765 58999999999999988776 46888888 89999999999753
No 54
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*
Probab=99.23 E-value=4.9e-11 Score=118.42 Aligned_cols=42 Identities=31% Similarity=0.503 Sum_probs=38.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceE
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRL 67 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~ 67 (448)
...+||+|||||++||+||+.|++.|. +|+||||.+.+||..
T Consensus 39 ~~~~DVvVVGaG~AGl~AA~~aa~~G~-~V~vlEk~~~~GG~s 80 (510)
T 4at0_A 39 DYEADVVVAGYGIAGVAASIEAARAGA-DVLVLERTSGWGGAT 80 (510)
T ss_dssp SEEEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSSSCTTG
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCC-cEEEEeCCCCCCCcc
Confidence 456899999999999999999999999 799999999998853
No 55
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}
Probab=99.23 E-value=4.6e-11 Score=114.99 Aligned_cols=57 Identities=14% Similarity=0.219 Sum_probs=47.6
Q ss_pred HHHHHHHHHhhhcccccccC-CCceecCceeEEEEecCCcE--EEEeCCCcEEEeCEEEEeechhh
Q 013178 226 ESVVHSVAKQFLSHRHQVIR-DPRLKLNKVVRNISYSKDKV--TVKTEDGSVYQANYAIVSVSIGV 288 (448)
Q Consensus 226 ~~l~~~l~~~l~~~~~~~~~-g~~i~~~~~V~~I~~~~~~v--~V~~~~g~~~~ad~VI~a~p~~~ 288 (448)
..+.+.|.+.+.+ . |++|+++++|++|+.++++| .|++.+|++++||.||.|.....
T Consensus 107 ~~l~~~L~~~~~~------~~gv~i~~~~~v~~i~~~~~~v~g~v~~~~g~~~~ad~vV~AdG~~s 166 (399)
T 2x3n_A 107 ESLRRLVLEKIDG------EATVEMLFETRIEAVQRDERHAIDQVRLNDGRVLRPRVVVGADGIAS 166 (399)
T ss_dssp HHHHHHHHHHHTT------CTTEEEECSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECCCTTC
T ss_pred HHHHHHHHHHhhh------cCCcEEEcCCEEEEEEEcCCceEEEEEECCCCEEECCEEEECCCCCh
Confidence 4566667777654 3 78999999999999988888 89999998999999999997653
No 56
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*
Probab=99.21 E-value=1.6e-10 Score=110.78 Aligned_cols=55 Identities=24% Similarity=0.340 Sum_probs=46.9
Q ss_pred HHHHHHHHHhhhcccccccCCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeechh
Q 013178 226 ESVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSIG 287 (448)
Q Consensus 226 ~~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~ 287 (448)
..+...|.+.+.+ .|++|+++++|++|+.+++++.|.+.+| +++||.||+|+...
T Consensus 150 ~~~~~~l~~~~~~------~Gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~ 204 (389)
T 2gf3_A 150 ENCIRAYRELAEA------RGAKVLTHTRVEDFDISPDSVKIETANG-SYTADKLIVSMGAW 204 (389)
T ss_dssp HHHHHHHHHHHHH------TTCEEECSCCEEEEEECSSCEEEEETTE-EEEEEEEEECCGGG
T ss_pred HHHHHHHHHHHHH------CCCEEEcCcEEEEEEecCCeEEEEeCCC-EEEeCEEEEecCcc
Confidence 4677777777766 5899999999999999888888988777 89999999999754
No 57
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}
Probab=99.21 E-value=4.9e-11 Score=118.07 Aligned_cols=57 Identities=9% Similarity=0.281 Sum_probs=47.9
Q ss_pred hHHHHHHHHHhhhcccccccCCCceecCceeEEEEecCCcEE-EEeCCCcEEEeCEEEEeechh
Q 013178 225 FESVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVT-VKTEDGSVYQANYAIVSVSIG 287 (448)
Q Consensus 225 ~~~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~-V~~~~g~~~~ad~VI~a~p~~ 287 (448)
...+.+.|.+.+.+ .|++|+++++|++|..+++++. |.+.+|++++||.||+|+...
T Consensus 219 ~~~l~~~L~~~l~~------~Gv~I~~~t~V~~I~~~~~~v~gV~l~~G~~i~Ad~VVlA~G~~ 276 (549)
T 3nlc_A 219 LVTMIEKMRATIIE------LGGEIRFSTRVDDLHMEDGQITGVTLSNGEEIKSRHVVLAVGHS 276 (549)
T ss_dssp HHHHHHHHHHHHHH------TTCEEESSCCEEEEEESSSBEEEEEETTSCEEECSCEEECCCTT
T ss_pred HHHHHHHHHHHHHh------cCCEEEeCCEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCC
Confidence 35577778777766 5899999999999999887765 888999899999999999754
No 58
>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}
Probab=99.19 E-value=1.1e-10 Score=115.32 Aligned_cols=56 Identities=11% Similarity=0.042 Sum_probs=44.2
Q ss_pred HHHHHHHHhhhcccccccCCCceecCceeEEEEecCCcEEEEeCCCc---EEEeCEEEEeechhh
Q 013178 227 SVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVTVKTEDGS---VYQANYAIVSVSIGV 288 (448)
Q Consensus 227 ~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~g~---~~~ad~VI~a~p~~~ 288 (448)
.+...|.+.+.+ .|++|+++++|++|+.++++|+|++.++. +++||+||.|.....
T Consensus 107 ~l~~~L~~~~~~------~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~S 165 (500)
T 2qa1_A 107 VTETHLEQWATG------LGADIRRGHEVLSLTDDGAGVTVEVRGPEGKHTLRAAYLVGCDGGRS 165 (500)
T ss_dssp HHHHHHHHHHHH------TTCEEEETCEEEEEEEETTEEEEEEEETTEEEEEEESEEEECCCTTC
T ss_pred HHHHHHHHHHHH------CCCEEECCcEEEEEEEcCCeEEEEEEcCCCCEEEEeCEEEECCCcch
Confidence 344455555544 48999999999999999889988887764 799999999987654
No 59
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1
Probab=99.19 E-value=1.9e-10 Score=115.68 Aligned_cols=42 Identities=31% Similarity=0.603 Sum_probs=38.2
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCce
Q 013178 24 SPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGR 66 (448)
Q Consensus 24 ~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr 66 (448)
....+||+|||||++||+||+.|++.|. +|+|||+.+.+||.
T Consensus 118 ~~~~~DVvVVG~G~aGl~aA~~la~~G~-~V~vlEk~~~~gg~ 159 (566)
T 1qo8_A 118 PSETTQVLVVGAGSAGFNASLAAKKAGA-NVILVDKAPFSGGN 159 (566)
T ss_dssp CSEEEEEEEECCSHHHHHHHHHHHHHTC-CEEEECSSSSSCTT
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCC-cEEEEeCCCCCCCc
Confidence 3457899999999999999999999999 79999999988874
No 60
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1, geranylgeranyl bacteriochlorophyll reductase- like FIXC homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma acidophilum dsm 1728} PDB: 3oz2_A*
Probab=99.18 E-value=3.6e-11 Score=115.61 Aligned_cols=38 Identities=26% Similarity=0.514 Sum_probs=35.3
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCc
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGG 65 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GG 65 (448)
++||+|||||++||++|+.|++.|+ +|+|+|++..+|+
T Consensus 4 ~~dVvIvG~G~aGl~~A~~La~~G~-~V~l~E~~~~~g~ 41 (397)
T 3cgv_A 4 TYDVLVVGGGPGGSTAARYAAKYGL-KTLMIEKRPEIGS 41 (397)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSSTTC
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCC-CEEEEeCCCCCCC
Confidence 5899999999999999999999999 7999999987765
No 61
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*
Probab=99.17 E-value=3.3e-10 Score=114.10 Aligned_cols=41 Identities=32% Similarity=0.609 Sum_probs=37.8
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCce
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGR 66 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr 66 (448)
...+||+|||||++||+||+.|++.|. +|+|||+.+.+||.
T Consensus 124 ~~~~DVvVVGaG~aGl~aA~~la~~G~-~V~vlEk~~~~gg~ 164 (571)
T 1y0p_A 124 HDTVDVVVVGSGGAGFSAAISATDSGA-KVILIEKEPVIGGN 164 (571)
T ss_dssp SEECSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSSSCTT
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCC-cEEEEeCCCCCCCc
Confidence 446899999999999999999999999 79999999988874
No 62
>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}
Probab=99.16 E-value=2.4e-10 Score=112.93 Aligned_cols=56 Identities=18% Similarity=0.181 Sum_probs=44.5
Q ss_pred HHHHHHHHhhhcccccccCCCceecCceeEEEEecCCcEEEEeCCCc---EEEeCEEEEeechhh
Q 013178 227 SVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVTVKTEDGS---VYQANYAIVSVSIGV 288 (448)
Q Consensus 227 ~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~g~---~~~ad~VI~a~p~~~ 288 (448)
.+...|.+.+.+ .|++|+++++|++|+.++++|+|++.++. +++||+||.|.....
T Consensus 108 ~l~~~L~~~~~~------~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~S 166 (499)
T 2qa2_A 108 TTESVLEEWALG------RGAELLRGHTVRALTDEGDHVVVEVEGPDGPRSLTTRYVVGCDGGRS 166 (499)
T ss_dssp HHHHHHHHHHHH------TTCEEEESCEEEEEEECSSCEEEEEECSSCEEEEEEEEEEECCCTTC
T ss_pred HHHHHHHHHHHh------CCCEEEcCCEEEEEEEeCCEEEEEEEcCCCcEEEEeCEEEEccCccc
Confidence 344555555544 48999999999999999889998887764 799999999987654
No 63
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*
Probab=99.15 E-value=1.4e-10 Score=115.62 Aligned_cols=43 Identities=35% Similarity=0.559 Sum_probs=38.5
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEE
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLH 68 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~ 68 (448)
..++||+|||||++|+++|+.|++.|+ +|+|||+++.+||.+.
T Consensus 19 ~~~~dVvIIGaG~aGl~aA~~L~~~G~-~v~iiE~~~~~GGtw~ 61 (549)
T 4ap3_A 19 TTSYDVVVVGAGIAGLYAIHRFRSQGL-TVRAFEAASGVGGVWY 61 (549)
T ss_dssp -CEEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSSSCTHHH
T ss_pred CCCCCEEEECchHHHHHHHHHHHhCCC-CEEEEeCCCCCCCccc
Confidence 456899999999999999999999999 8999999999998443
No 64
>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}
Probab=99.14 E-value=1.2e-10 Score=116.61 Aligned_cols=57 Identities=12% Similarity=0.093 Sum_probs=45.0
Q ss_pred HHHHHHHHHhhhcccccccCCCceecCceeEEEEecCCcEEEEe--CCC-cEEEeCEEEEeechhh
Q 013178 226 ESVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVTVKT--EDG-SVYQANYAIVSVSIGV 288 (448)
Q Consensus 226 ~~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~--~~g-~~~~ad~VI~a~p~~~ 288 (448)
..+...|.+.+.+ .|++|+++++|++|+.++++|.|++ .+| .+++||.||.|.....
T Consensus 148 ~~l~~~L~~~a~~------~gv~i~~~~~v~~l~~~~~~v~v~~~~~~G~~~~~a~~vV~ADG~~S 207 (570)
T 3fmw_A 148 SRTEALLAEHARE------AGAEIPRGHEVTRLRQDAEAVEVTVAGPSGPYPVRARYGVGCDGGRS 207 (570)
T ss_dssp HHHHHHHHHHHHH------HTEECCBSCEEEECCBCSSCEEEEEEETTEEEEEEESEEEECSCSSC
T ss_pred HHHHHHHHHHHHh------CCCEEEeCCEEEEEEEcCCeEEEEEEeCCCcEEEEeCEEEEcCCCCc
Confidence 3455555555544 4889999999999999988888877 678 6899999999987653
No 65
>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*
Probab=99.13 E-value=1.1e-08 Score=101.37 Aligned_cols=57 Identities=11% Similarity=0.049 Sum_probs=45.2
Q ss_pred hHHHHHHHHHhhhcccccccCCCceecCceeEEEEecCCcEEEEe---CCCc--EEEeCEEEEeechh
Q 013178 225 FESVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVTVKT---EDGS--VYQANYAIVSVSIG 287 (448)
Q Consensus 225 ~~~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~---~~g~--~~~ad~VI~a~p~~ 287 (448)
...+...|++.+.+ .|++|+++++|++|..+++.+.|.+ .+|+ +++||.||+|+.+.
T Consensus 148 ~~~l~~~l~~~a~~------~Gv~i~~~~~V~~l~~~~~~~~V~~~d~~~G~~~~i~A~~VV~AtG~~ 209 (501)
T 2qcu_A 148 DARLVLANAQMVVR------KGGEVLTRTRATSARRENGLWIVEAEDIDTGKKYSWQARGLVNATGPW 209 (501)
T ss_dssp HHHHHHHHHHHHHH------TTCEEECSEEEEEEEEETTEEEEEEEETTTCCEEEEEESCEEECCGGG
T ss_pred HHHHHHHHHHHHHH------cCCEEEcCcEEEEEEEeCCEEEEEEEECCCCCEEEEECCEEEECCChh
Confidence 45677777777765 5999999999999998876566766 3565 79999999999764
No 66
>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*
Probab=99.13 E-value=3.9e-10 Score=107.68 Aligned_cols=54 Identities=9% Similarity=0.125 Sum_probs=42.7
Q ss_pred HHHHHHHHHhhhcccccccCCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeechhh
Q 013178 226 ESVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSIGV 288 (448)
Q Consensus 226 ~~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~~ 288 (448)
..+...|.+.+.+ .|++|+++++|++|+. ++ .|++.+|++++||.||.|.....
T Consensus 107 ~~l~~~L~~~~~~------~gv~i~~~~~v~~i~~--~~-~v~~~~g~~~~ad~vV~AdG~~s 160 (379)
T 3alj_A 107 SHLHDALVNRARA------LGVDISVNSEAVAADP--VG-RLTLQTGEVLEADLIVGADGVGS 160 (379)
T ss_dssp HHHHHHHHHHHHH------TTCEEESSCCEEEEET--TT-EEEETTSCEEECSEEEECCCTTC
T ss_pred HHHHHHHHHHHHh------cCCEEEeCCEEEEEEe--CC-EEEECCCCEEEcCEEEECCCccH
Confidence 3455566666654 4899999999999988 34 78888888999999999997653
No 67
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Probab=99.13 E-value=2.3e-10 Score=114.47 Aligned_cols=43 Identities=37% Similarity=0.625 Sum_probs=39.0
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceE
Q 013178 24 SPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRL 67 (448)
Q Consensus 24 ~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~ 67 (448)
.+.++||+|||||++||++|+.|++.|. +|+|||+++.+||.+
T Consensus 13 ~~~~~dVvIIGaG~aGl~aA~~L~~~G~-~v~iiE~~~~~GG~w 55 (542)
T 1w4x_A 13 PPEEVDVLVVGAGFSGLYALYRLRELGR-SVHVIETAGDVGGVW 55 (542)
T ss_dssp CCSEEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSSSCTHH
T ss_pred CCCCCCEEEECccHHHHHHHHHHHhCCC-CEEEEeCCCCCCCcc
Confidence 3457899999999999999999999999 899999999999854
No 68
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*
Probab=99.12 E-value=1.6e-10 Score=115.09 Aligned_cols=43 Identities=23% Similarity=0.434 Sum_probs=38.6
Q ss_pred CCCcEEEECCChHHHHHHHHHH-HcCCCcEEEEecCCCCCceEEE
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLE-EAGYKDFIILEASSRVGGRLHK 69 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~-~~G~~~V~vlE~~~~~GGr~~s 69 (448)
.++||+|||||++||++|+.|+ +.|. +|+|+|+++.+||.+..
T Consensus 7 ~~~dVvIIGaG~aGl~aA~~L~~~~G~-~v~viE~~~~~GGtw~~ 50 (540)
T 3gwf_A 7 HTVDAVVIGAGFGGIYAVHKLHHELGL-TTVGFDKADGPGGTWYW 50 (540)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCC-CEEEEESSSSSCTHHHH
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCC-CEEEEECCCCCCCcccc
Confidence 4689999999999999999999 8999 89999999999985433
No 69
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}
Probab=99.12 E-value=2.6e-10 Score=110.48 Aligned_cols=55 Identities=15% Similarity=0.244 Sum_probs=43.0
Q ss_pred HHHHHHHHhhhcccccccCCCceecCceeEEEEecCCc--EEEEeCCCc--EEEeCEEEEeechh
Q 013178 227 SVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDK--VTVKTEDGS--VYQANYAIVSVSIG 287 (448)
Q Consensus 227 ~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~--v~V~~~~g~--~~~ad~VI~a~p~~ 287 (448)
.+...|.+.+.+ .|++|+.+++|++|+.++++ +.|.+.+|+ +++||.||.|+...
T Consensus 107 ~~~~~L~~~a~~------~gv~i~~~~~v~~i~~~~~~~~v~v~~~~g~~~~~~a~~vV~A~G~~ 165 (421)
T 3nix_A 107 NFDKTLADEAAR------QGVDVEYEVGVTDIKFFGTDSVTTIEDINGNKREIEARFIIDASGYG 165 (421)
T ss_dssp HHHHHHHHHHHH------HTCEEECSEEEEEEEEETTEEEEEEEETTSCEEEEEEEEEEECCGGG
T ss_pred HHHHHHHHHHHh------CCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCEEEEEcCEEEECCCCc
Confidence 345555555544 48999999999999988776 457778887 69999999999765
No 70
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
Probab=99.11 E-value=2.1e-10 Score=120.62 Aligned_cols=56 Identities=23% Similarity=0.222 Sum_probs=46.9
Q ss_pred hHHHHHHHHHhhhcccccccCCCceecCceeEEEEecCCcE-EEEeCCCcEEEeCEEEEeechh
Q 013178 225 FESVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKV-TVKTEDGSVYQANYAIVSVSIG 287 (448)
Q Consensus 225 ~~~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v-~V~~~~g~~~~ad~VI~a~p~~ 287 (448)
...+...|++.+.+ .|++|+++++|++|+.+++++ .|.+.+| +++||+||+|+...
T Consensus 150 p~~l~~~L~~~a~~------~Gv~i~~~t~V~~i~~~~~~v~~V~t~~G-~i~Ad~VV~AaG~~ 206 (830)
T 1pj5_A 150 AARAVQLLIKRTES------AGVTYRGSTTVTGIEQSGGRVTGVQTADG-VIPADIVVSCAGFW 206 (830)
T ss_dssp HHHHHHHHHHHHHH------TTCEEECSCCEEEEEEETTEEEEEEETTE-EEECSEEEECCGGG
T ss_pred HHHHHHHHHHHHHH------cCCEEECCceEEEEEEeCCEEEEEEECCc-EEECCEEEECCccc
Confidence 34677788887766 599999999999999988776 5888888 89999999999754
No 71
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Probab=99.11 E-value=6e-10 Score=111.90 Aligned_cols=56 Identities=16% Similarity=0.219 Sum_probs=42.9
Q ss_pred HHHHHHHHhhhcccccccCCCceecCceeEEEEec-CCcEEEEeC-CC--cEEEeCEEEEeechhh
Q 013178 227 SVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYS-KDKVTVKTE-DG--SVYQANYAIVSVSIGV 288 (448)
Q Consensus 227 ~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~-~~~v~V~~~-~g--~~~~ad~VI~a~p~~~ 288 (448)
.+...|.+.+.+ .|++|+.+++|++|..+ ++.+.|.+. +| .+++||.||.|.....
T Consensus 129 ~l~~~L~~~a~~------~Gv~i~~g~~V~~v~~~~g~~~~V~~~~~G~~~~i~AdlVV~AdG~~S 188 (591)
T 3i3l_A 129 EFDKLLLDEARS------RGITVHEETPVTDVDLSDPDRVVLTVRRGGESVTVESDFVIDAGGSGG 188 (591)
T ss_dssp HHHHHHHHHHHH------TTCEEETTCCEEEEECCSTTCEEEEEEETTEEEEEEESEEEECCGGGC
T ss_pred HHHHHHHHHHHh------CCCEEEeCCEEEEEEEcCCCEEEEEEecCCceEEEEcCEEEECCCCcc
Confidence 455556655554 58999999999999986 455777776 66 5799999999997653
No 72
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}
Probab=99.11 E-value=1.4e-10 Score=111.19 Aligned_cols=39 Identities=26% Similarity=0.497 Sum_probs=35.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCc
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGG 65 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GG 65 (448)
++|||+|||||++||+||+.|+++|+ +|+|||+++.+|.
T Consensus 3 e~yDViIVGaGpaGl~~A~~La~~G~-~V~v~Er~~~~~~ 41 (397)
T 3oz2_A 3 ETYDVLVVGGGPGGSTAARYAAKYGL-KTLMIEKRPEIGS 41 (397)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSSTTC
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCCCCCC
Confidence 35999999999999999999999999 7999999877764
No 73
>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}
Probab=99.09 E-value=1.5e-10 Score=115.88 Aligned_cols=41 Identities=17% Similarity=0.282 Sum_probs=37.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceE
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRL 67 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~ 67 (448)
..+||+|||||++|+++|+.|++.|. +|+|+|+++..+|..
T Consensus 17 ~~~DVvVIGgGi~Gl~~A~~La~~G~-~V~LlEk~d~~~GtS 57 (561)
T 3da1_A 17 KQLDLLVIGGGITGAGIALDAQVRGI-QTGLVEMNDFASGTS 57 (561)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHTTTC-CEEEEESSSTTCSGG
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCC-cEEEEECCCCCCCcc
Confidence 56999999999999999999999999 799999998777643
No 74
>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}
Probab=99.09 E-value=6.5e-10 Score=111.16 Aligned_cols=56 Identities=11% Similarity=0.057 Sum_probs=44.8
Q ss_pred HHHHHHHHhhhcccccccCCCceecCceeEEEEecCC----cEEEEeCCC---cEEEeCEEEEeechhh
Q 013178 227 SVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKD----KVTVKTEDG---SVYQANYAIVSVSIGV 288 (448)
Q Consensus 227 ~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~----~v~V~~~~g---~~~~ad~VI~a~p~~~ 288 (448)
.+...|.+.+.+ .|++|+++++|++|+.+++ +|.|++.++ .+++||+||.|.....
T Consensus 121 ~l~~~L~~~a~~------~gv~i~~~~~v~~i~~~~~~~~~~v~v~~~~~~~~~~i~a~~vV~AdG~~S 183 (535)
T 3ihg_A 121 KLEPILLAQARK------HGGAIRFGTRLLSFRQHDDDAGAGVTARLAGPDGEYDLRAGYLVGADGNRS 183 (535)
T ss_dssp HHHHHHHHHHHH------TTCEEESSCEEEEEEEECGGGCSEEEEEEEETTEEEEEEEEEEEECCCTTC
T ss_pred HHHHHHHHHHHh------CCCEEEeCCEEEEEEECCCCccccEEEEEEcCCCeEEEEeCEEEECCCCcc
Confidence 355556666554 5899999999999999888 888887776 6899999999997653
No 75
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}
Probab=99.08 E-value=3.5e-10 Score=106.02 Aligned_cols=43 Identities=23% Similarity=0.423 Sum_probs=38.0
Q ss_pred CCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeechh
Q 013178 245 RDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSIG 287 (448)
Q Consensus 245 ~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~ 287 (448)
.+++++++++|++|+.+++.+.|.+.+|.++++|+||+|+...
T Consensus 78 ~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~lv~AtG~~ 120 (335)
T 2zbw_A 78 FNPVYSLGERAETLEREGDLFKVTTSQGNAYTAKAVIIAAGVG 120 (335)
T ss_dssp GCCEEEESCCEEEEEEETTEEEEEETTSCEEEEEEEEECCTTS
T ss_pred cCCEEEeCCEEEEEEECCCEEEEEECCCCEEEeCEEEECCCCC
Confidence 3678999999999998877888999888899999999999764
No 76
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}
Probab=99.07 E-value=5.9e-10 Score=107.54 Aligned_cols=43 Identities=12% Similarity=0.077 Sum_probs=36.9
Q ss_pred CCceecCceeEEEEecC-CcEEEEeCCCcEEEeCEEEEeechhh
Q 013178 246 DPRLKLNKVVRNISYSK-DKVTVKTEDGSVYQANYAIVSVSIGV 288 (448)
Q Consensus 246 g~~i~~~~~V~~I~~~~-~~v~V~~~~g~~~~ad~VI~a~p~~~ 288 (448)
+..|+++++|++++..+ ++|+|++++|++++||.||-|=..+.
T Consensus 123 ~~~v~~~~~v~~~~~~~~~~v~v~~~dG~~~~adlvVgADG~~S 166 (412)
T 4hb9_A 123 ANTIQWNKTFVRYEHIENGGIKIFFADGSHENVDVLVGADGSNS 166 (412)
T ss_dssp TTTEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECCCTTC
T ss_pred cceEEEEEEEEeeeEcCCCeEEEEECCCCEEEeeEEEECCCCCc
Confidence 56899999999998765 46999999999999999999876553
No 77
>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*
Probab=99.07 E-value=6.2e-10 Score=107.47 Aligned_cols=38 Identities=34% Similarity=0.589 Sum_probs=34.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCc-EEEEecCCCCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKD-FIILEASSRVG 64 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~-V~vlE~~~~~G 64 (448)
+++||+|||||++||++|..|++.|+ + |+|||+++.++
T Consensus 3 ~~~dVvIVGaG~aGl~~A~~L~~~G~-~~v~v~E~~~~~~ 41 (410)
T 3c96_A 3 EPIDILIAGAGIGGLSCALALHQAGI-GKVTLLESSSEIR 41 (410)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTC-SEEEEEESSSSCC
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCC-CeEEEEECCCCcc
Confidence 46899999999999999999999999 8 99999987654
No 78
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}
Probab=99.04 E-value=6e-10 Score=105.56 Aligned_cols=41 Identities=24% Similarity=0.410 Sum_probs=37.0
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCce
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGR 66 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr 66 (448)
.+++||+|||||++||++|+.|++.|+ +|+|||+++.+||.
T Consensus 12 ~~~~dvvIIG~G~aGl~aA~~l~~~g~-~v~lie~~~~~gg~ 52 (360)
T 3ab1_A 12 HDMRDLTIIGGGPTGIFAAFQCGMNNI-SCRIIESMPQLGGQ 52 (360)
T ss_dssp -CCEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSSSCHH
T ss_pred CCCCCEEEECCCHHHHHHHHHHHhCCC-CEEEEecCCCCCCc
Confidence 456899999999999999999999999 79999999888763
No 79
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*
Probab=99.04 E-value=1.6e-09 Score=105.78 Aligned_cols=56 Identities=13% Similarity=0.150 Sum_probs=45.7
Q ss_pred hHHHHHHHHHhhhcccccccCCCceecCceeEEEEe---------------cCCcE-EEEeCCCcEE--EeCEEEEeech
Q 013178 225 FESVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISY---------------SKDKV-TVKTEDGSVY--QANYAIVSVSI 286 (448)
Q Consensus 225 ~~~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~---------------~~~~v-~V~~~~g~~~--~ad~VI~a~p~ 286 (448)
...+...|.+.+.+ .|++|+++++|++|+. +++++ .|.+.+| ++ +||.||+|+..
T Consensus 180 ~~~l~~~L~~~~~~------~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~v~~V~t~~g-~i~~~Ad~VV~AtG~ 252 (448)
T 3axb_A 180 AEKVVDYYYRRASG------AGVEFIFGRRVVGVELKPRVELGIEGEPLPWQEARASAAVLSDG-TRVEVGEKLVVAAGV 252 (448)
T ss_dssp HHHHHHHHHHHHHH------TTCEEEESCCEEEEEEEESSCCCCTTSSCTTSCEEEEEEEETTS-CEEEEEEEEEECCGG
T ss_pred HHHHHHHHHHHHHh------CCCEEEcCCeEEEEEecccccccccccccccCCCceEEEEeCCC-EEeecCCEEEECCCc
Confidence 34677778877766 5999999999999998 56665 5888888 78 99999999975
Q ss_pred h
Q 013178 287 G 287 (448)
Q Consensus 287 ~ 287 (448)
.
T Consensus 253 ~ 253 (448)
T 3axb_A 253 W 253 (448)
T ss_dssp G
T ss_pred C
Confidence 3
No 80
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6
Probab=99.03 E-value=1.1e-09 Score=100.03 Aligned_cols=39 Identities=33% Similarity=0.561 Sum_probs=36.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHHc-CCCcEEEEecCCCCCc
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEA-GYKDFIILEASSRVGG 65 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~-G~~~V~vlE~~~~~GG 65 (448)
.++||+|||||++||++|+.|++. |. +|+|+|+++.+||
T Consensus 38 ~~~dVvIIGgG~aGl~aA~~la~~~G~-~V~viEk~~~~gg 77 (284)
T 1rp0_A 38 AETDVVVVGAGSAGLSAAYEISKNPNV-QVAIIEQSVSPGG 77 (284)
T ss_dssp TEEEEEEECCSHHHHHHHHHHHTSTTS-CEEEEESSSSCCT
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCC-eEEEEECCCCCCC
Confidence 468999999999999999999997 99 7999999988876
No 81
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*
Probab=99.03 E-value=1.1e-09 Score=108.25 Aligned_cols=41 Identities=24% Similarity=0.387 Sum_probs=37.2
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCc
Q 013178 24 SPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGG 65 (448)
Q Consensus 24 ~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GG 65 (448)
....+||+|||||++||++|..|++.|. +|+|+|+++.+|+
T Consensus 89 ~~~~~dVvIVGgG~aGl~aA~~La~~G~-~V~liEk~~~~g~ 129 (497)
T 2bry_A 89 ACTNTKCLVVGAGPCGLRAAVELALLGA-RVVLVEKRIKFSR 129 (497)
T ss_dssp TTTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCSSCCC
T ss_pred ccCCCCEEEECccHHHHHHHHHHHHCCC-eEEEEEeccccCC
Confidence 3567899999999999999999999999 8999999987764
No 82
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*
Probab=99.03 E-value=2.7e-10 Score=106.58 Aligned_cols=40 Identities=23% Similarity=0.341 Sum_probs=37.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCce
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGR 66 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr 66 (448)
+++||+|||||++||+||+.|++.|+ +|+|+|+++.+||.
T Consensus 6 ~~~~vvIIG~G~aGl~aA~~l~~~g~-~v~lie~~~~~gG~ 45 (332)
T 3lzw_A 6 KVYDITIIGGGPVGLFTAFYGGMRQA-SVKIIESLPQLGGQ 45 (332)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSSSCHH
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCC-CEEEEEcCCCCCce
Confidence 45899999999999999999999999 79999999988874
No 83
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}
Probab=99.03 E-value=7.3e-10 Score=104.65 Aligned_cols=42 Identities=12% Similarity=0.040 Sum_probs=38.2
Q ss_pred CCCceecCceeEEEEecCCcEE-EEeCCCcEEEeCEEEEeechh
Q 013178 245 RDPRLKLNKVVRNISYSKDKVT-VKTEDGSVYQANYAIVSVSIG 287 (448)
Q Consensus 245 ~g~~i~~~~~V~~I~~~~~~v~-V~~~~g~~~~ad~VI~a~p~~ 287 (448)
.|++++++++|++|+.+++++. |++.+| +++||+||+|+...
T Consensus 89 ~~~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~~d~vV~AtG~~ 131 (357)
T 4a9w_A 89 YALPVLRPIRVQRVSHFGERLRVVARDGR-QWLARAVISATGTW 131 (357)
T ss_dssp TTCCEECSCCEEEEEEETTEEEEEETTSC-EEEEEEEEECCCSG
T ss_pred cCCEEEcCCEEEEEEECCCcEEEEEeCCC-EEEeCEEEECCCCC
Confidence 4889999999999999998899 999888 99999999999853
No 84
>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...
Probab=99.02 E-value=8.8e-10 Score=105.81 Aligned_cols=57 Identities=9% Similarity=0.055 Sum_probs=43.3
Q ss_pred HHHHHHHHhhhcccccccCCCceecCceeEEEEecC-CcEEEEe-CCCc--EEEeCEEEEeechhhc
Q 013178 227 SVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSK-DKVTVKT-EDGS--VYQANYAIVSVSIGVL 289 (448)
Q Consensus 227 ~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~-~~v~V~~-~~g~--~~~ad~VI~a~p~~~l 289 (448)
.+...|.+.+.+ .|++|+++++|++|+.++ +++.|++ .+|+ +++||.||.|......
T Consensus 104 ~l~~~L~~~~~~------~g~~i~~~~~v~~i~~~~~~~~~v~~~~~g~~~~~~a~~vV~AdG~~S~ 164 (394)
T 1k0i_A 104 EVTRDLMEAREA------CGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCDGFHGI 164 (394)
T ss_dssp HHHHHHHHHHHH------TTCEEESSCEEEEEECTTSSSCEEEEEETTEEEEEECSEEEECCCTTCS
T ss_pred HHHHHHHHHHHh------cCCeEEeceeEEEEEEecCCceEEEEecCCcEEEEEeCEEEECCCCCcH
Confidence 344555555544 489999999999999864 5677776 6886 6999999999987543
No 85
>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*
Probab=99.02 E-value=3.9e-09 Score=105.93 Aligned_cols=39 Identities=21% Similarity=0.341 Sum_probs=35.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCc
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGG 65 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GG 65 (448)
.++||+|||||++|+++|+.|++.|. +|+|+|+++..+|
T Consensus 31 ~~~DVvVIGgGi~G~~~A~~La~rG~-~V~LlE~~~~~~G 69 (571)
T 2rgh_A 31 EELDLLIIGGGITGAGVAVQAAASGI-KTGLIEMQDFAEG 69 (571)
T ss_dssp SCBSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSTTCS
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCCCCCC
Confidence 46899999999999999999999999 7999999876665
No 86
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*
Probab=99.02 E-value=9.4e-10 Score=109.62 Aligned_cols=41 Identities=32% Similarity=0.637 Sum_probs=38.0
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCce
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGR 66 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr 66 (448)
.+++||+|||||++|+++|+.|++.|. +|+|||+++.+||.
T Consensus 7 ~~~~dVvIIGaG~aGl~aA~~L~~~g~-~v~iiE~~~~~GGt 47 (545)
T 3uox_A 7 SPALDAVVIGAGVTGIYQAFLINQAGM-KVLGIEAGEDVGGT 47 (545)
T ss_dssp CCSEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSSSCTH
T ss_pred CCCCCEEEECccHHHHHHHHHHHhCCC-CEEEEeCCCCCCCc
Confidence 356899999999999999999999999 79999999999984
No 87
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Probab=99.02 E-value=1.3e-09 Score=101.39 Aligned_cols=42 Identities=21% Similarity=0.367 Sum_probs=35.4
Q ss_pred CCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeechh
Q 013178 245 RDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSIG 287 (448)
Q Consensus 245 ~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~ 287 (448)
.|+++++ ++|++|..+++.+.|.+.+|.++.+|+||+|+...
T Consensus 83 ~~v~~~~-~~v~~i~~~~~~~~v~~~~g~~~~~d~lvlAtG~~ 124 (323)
T 3f8d_A 83 YEVPVLL-DIVEKIENRGDEFVVKTKRKGEFKADSVILGIGVK 124 (323)
T ss_dssp TTCCEEE-SCEEEEEEC--CEEEEESSSCEEEEEEEEECCCCE
T ss_pred cCCEEEE-EEEEEEEecCCEEEEEECCCCEEEcCEEEECcCCC
Confidence 4788999 99999999888899999998899999999998643
No 88
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}
Probab=99.01 E-value=4.2e-09 Score=103.84 Aligned_cols=54 Identities=7% Similarity=0.164 Sum_probs=44.6
Q ss_pred HHHHHHHHhhhcccccccCCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeech
Q 013178 227 SVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSI 286 (448)
Q Consensus 227 ~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~ 286 (448)
.+.+.+.+.+.+ .|++|+++++|++|+.+++++.|.+.+|+++.+|.||+|+..
T Consensus 233 ~~~~~l~~~l~~------~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vi~A~G~ 286 (484)
T 3o0h_A 233 DLRQLLNDAMVA------KGISIIYEATVSQVQSTENCYNVVLTNGQTICADRVMLATGR 286 (484)
T ss_dssp HHHHHHHHHHHH------HTCEEESSCCEEEEEECSSSEEEEETTSCEEEESEEEECCCE
T ss_pred HHHHHHHHHHHH------CCCEEEeCCEEEEEEeeCCEEEEEECCCcEEEcCEEEEeeCC
Confidence 344555555544 599999999999999988889999999989999999999863
No 89
>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*
Probab=99.01 E-value=1.4e-09 Score=106.18 Aligned_cols=44 Identities=30% Similarity=0.437 Sum_probs=38.6
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHcCCC-cEEEEecCCCCCceE
Q 013178 24 SPPSNSVIIVGAGMSGFMAAKTLEEAGYK-DFIILEASSRVGGRL 67 (448)
Q Consensus 24 ~~~~~dViIIGaGiaGL~aA~~L~~~G~~-~V~vlE~~~~~GGr~ 67 (448)
+.+.+||+|||||++||++|..|++.|.. +|+|||+++.+||.+
T Consensus 3 ~~~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~~ 47 (447)
T 2gv8_A 3 LPTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVW 47 (447)
T ss_dssp CCSCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTC
T ss_pred CCCCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCee
Confidence 34578999999999999999999999972 499999999999844
No 90
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Probab=99.00 E-value=2.3e-09 Score=106.52 Aligned_cols=56 Identities=7% Similarity=0.165 Sum_probs=43.1
Q ss_pred HHHHHHHHhhhcccccccCCCceecCceeEEEEecCCc---EEEEeCCCc--EEEeCEEEEeechhh
Q 013178 227 SVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDK---VTVKTEDGS--VYQANYAIVSVSIGV 288 (448)
Q Consensus 227 ~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~---v~V~~~~g~--~~~ad~VI~a~p~~~ 288 (448)
.+...|.+.+.+ .|++|+++++|++|..++++ |.+.+.+|+ +++||.||.|.....
T Consensus 112 ~l~~~L~~~a~~------~Gv~i~~~~~V~~v~~~~~~v~gv~~~~~dG~~~~i~ad~VI~AdG~~S 172 (512)
T 3e1t_A 112 RFDDMLLRNSER------KGVDVRERHEVIDVLFEGERAVGVRYRNTEGVELMAHARFIVDASGNRT 172 (512)
T ss_dssp HHHHHHHHHHHH------TTCEEESSCEEEEEEEETTEEEEEEEECSSSCEEEEEEEEEEECCCTTC
T ss_pred HHHHHHHHHHHh------CCCEEEcCCEEEEEEEECCEEEEEEEEeCCCCEEEEEcCEEEECCCcch
Confidence 455556665554 58999999999999998876 445556674 799999999998754
No 91
>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*
Probab=99.00 E-value=1.2e-09 Score=109.47 Aligned_cols=66 Identities=15% Similarity=0.219 Sum_probs=48.1
Q ss_pred CCCCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEEceeCCceeeecceeccCCCCCCCHHHHHHHHc
Q 013178 22 PTSPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNIGGHTIELGANWVNSGGPKSSPSLQIAKKI 101 (448)
Q Consensus 22 ~~~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~l~~~l 101 (448)
|....++||+|||||++||++|..|++.|. +|+|||++..++...+. .. ......++++++
T Consensus 21 M~~~~~~dVlIVGaGpaGl~~A~~La~~G~-~V~vlEr~~~~~~~~~~------------~~------l~~~~~~~l~~l 81 (549)
T 2r0c_A 21 MNAPIETDVLILGGGPVGMALALDLAHRQV-GHLVVEQTDGTITHPRV------------GT------IGPRSMELFRRW 81 (549)
T ss_dssp -CCCEEEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSCSCCSSCCC------------CE------ECHHHHHHHHHT
T ss_pred cCCCCCCCEEEECcCHHHHHHHHHHHHCCC-CEEEEeCCCCCCCCCce------------ee------eCHHHHHHHHHc
Confidence 444456899999999999999999999999 79999998766431111 01 234566778888
Q ss_pred CCcee
Q 013178 102 KLKTF 106 (448)
Q Consensus 102 gl~~~ 106 (448)
|+...
T Consensus 82 Gl~~~ 86 (549)
T 2r0c_A 82 GVAKQ 86 (549)
T ss_dssp TCHHH
T ss_pred CChHH
Confidence 87543
No 92
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*
Probab=98.98 E-value=9.9e-10 Score=107.43 Aligned_cols=37 Identities=24% Similarity=0.467 Sum_probs=33.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRV 63 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~ 63 (448)
+++||+|||||++||++|+.|++.|+ +|+|||++...
T Consensus 5 ~~~dVvIVGaG~aGl~aA~~La~~G~-~V~vlE~~~~~ 41 (453)
T 3atr_A 5 LKYDVLIIGGGFAGSSAAYQLSRRGL-KILLVDSKPWN 41 (453)
T ss_dssp EECSEEEECCSHHHHHHHHHHSSSSC-CEEEECSSCGG
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCCCC
Confidence 46899999999999999999999999 79999998653
No 93
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Probab=98.97 E-value=3.4e-09 Score=106.48 Aligned_cols=40 Identities=35% Similarity=0.610 Sum_probs=37.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCce
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGR 66 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr 66 (448)
..+||+|||||++||++|+.|++.|. +|+|+|+.+.+||.
T Consensus 125 ~~~~v~viG~G~aG~~aa~~~~~~g~-~v~~~e~~~~~~~~ 164 (572)
T 1d4d_A 125 ETTDVVIIGSGGAGLAAAVSARDAGA-KVILLEKEPIPGGN 164 (572)
T ss_dssp EECSEEEECCSHHHHHHHHHHHSSSC-CEEEECSSSSSCTT
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCC-cEEEEecCCCCCcc
Confidence 46799999999999999999999999 79999999998874
No 94
>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*
Probab=98.93 E-value=1.5e-08 Score=101.82 Aligned_cols=39 Identities=21% Similarity=0.334 Sum_probs=35.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCc
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGG 65 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GG 65 (448)
..+||+|||||++||+||+.|++.|. +|+||||....||
T Consensus 6 ~~~DVvVVGaG~AGl~AA~~la~~G~-~V~vlEK~~~~~g 44 (588)
T 2wdq_A 6 REFDAVVIGAGGAGMRAALQISQSGQ-TCALLSKVFPTRS 44 (588)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTC-CEEEEESSCGGGS
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCC-cEEEEecCCCCCC
Confidence 46899999999999999999999999 7999999877654
No 95
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*
Probab=98.90 E-value=5.5e-09 Score=105.11 Aligned_cols=41 Identities=29% Similarity=0.539 Sum_probs=37.1
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHc------CCCcEEEEecCCCCCce
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEA------GYKDFIILEASSRVGGR 66 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~------G~~~V~vlE~~~~~GGr 66 (448)
.+++||+|||||++||++|..|++. |. +|+|||+.+.+|+.
T Consensus 33 ~~~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~-~V~vlEk~~~~g~~ 79 (584)
T 2gmh_A 33 AEEADVVIVGAGPAGLSAATRLKQLAAQHEKDL-RVCLVEKAAHIGAH 79 (584)
T ss_dssp EEECSEEEECCSHHHHHHHHHHHHHHHHTTCCC-CEEEECSSSSTTTT
T ss_pred ccCCCEEEECcCHHHHHHHHHHHhcccccCCCC-cEEEEeCCCCCCCc
Confidence 3468999999999999999999999 99 79999999888764
No 96
>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...
Probab=98.88 E-value=3.8e-08 Score=99.12 Aligned_cols=40 Identities=28% Similarity=0.342 Sum_probs=35.9
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCc
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGG 65 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GG 65 (448)
...+||+|||||++||+||+.|+++|. +|+|||+....||
T Consensus 16 ~~~~DVvVVG~G~AGl~AAl~aa~~G~-~V~vlEK~~~~~g 55 (621)
T 2h88_A 16 DHEFDAVVVGAGGAGLRAAFGLSEAGF-NTACVTKLFPTRS 55 (621)
T ss_dssp EEEEEEEEECCSHHHHHHHHHHHHTTC-CEEEEESSCGGGS
T ss_pred cccCCEEEECccHHHHHHHHHHHHCCC-cEEEEeccCCCCC
Confidence 356899999999999999999999999 7999999876555
No 97
>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*
Probab=98.87 E-value=7.6e-09 Score=105.35 Aligned_cols=38 Identities=29% Similarity=0.423 Sum_probs=34.5
Q ss_pred CCCCcEEEECCChHHHHHHHHHHH-cCCCcEEEEecCCCC
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEE-AGYKDFIILEASSRV 63 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~-~G~~~V~vlE~~~~~ 63 (448)
+.++||+|||||++||++|..|++ .|+ +|+|||++...
T Consensus 30 ~~~~dVlIVGaGpaGL~~A~~La~~~G~-~V~viEr~~~~ 68 (639)
T 2dkh_A 30 PSQVDVLIVGCGPAGLTLAAQLAAFPDI-RTCIVEQKEGP 68 (639)
T ss_dssp CSEEEEEEECCSHHHHHHHHHHTTCTTS-CEEEECSSSSC
T ss_pred CCCCcEEEECcCHHHHHHHHHHHHhCCC-CEEEEeCCCCC
Confidence 456899999999999999999999 999 79999998654
No 98
>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}
Probab=98.87 E-value=1.4e-09 Score=104.63 Aligned_cols=56 Identities=20% Similarity=0.178 Sum_probs=40.6
Q ss_pred hHHHHHHHHHhhhcccccccCCCceecCceeE---------EEEecCCcEEEEeCCCcEEEeCEEEEeechh
Q 013178 225 FESVVHSVAKQFLSHRHQVIRDPRLKLNKVVR---------NISYSKDKVTVKTEDGSVYQANYAIVSVSIG 287 (448)
Q Consensus 225 ~~~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~---------~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~ 287 (448)
...+...|.+.+.+ .|++|+++++|+ +|..+++++.|.+.+| +++||.||+|+...
T Consensus 171 ~~~l~~~L~~~~~~------~Gv~i~~~~~v~~~~g~~~~~~i~~~~~~v~v~~~~g-~i~a~~VV~A~G~~ 235 (405)
T 3c4n_A 171 PGSLALLAAQQAIG------QGAGLLLNTRAELVPGGVRLHRLTVTNTHQIVVHETR-QIRAGVIIVAAGAA 235 (405)
T ss_dssp HHHHHHHHHHHHHT------TTCEEECSCEEEEETTEEEEECBCC-------CBCCE-EEEEEEEEECCGGG
T ss_pred HHHHHHHHHHHHHH------CCCEEEcCCEEEeccccccccceEeeCCeEEEEECCc-EEECCEEEECCCcc
Confidence 35577777777765 589999999999 9988777788878777 89999999999764
No 99
>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*
Probab=98.87 E-value=5.7e-08 Score=98.60 Aligned_cols=39 Identities=21% Similarity=0.376 Sum_probs=35.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCc
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGG 65 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GG 65 (448)
..+||+|||||++||+||+.|++.|. +|+|||+....+|
T Consensus 4 ~~~DVvVIGgG~AGL~AAl~aae~G~-~V~vlEK~~~~~g 42 (660)
T 2bs2_A 4 QYCDSLVIGGGLAGLRAAVATQQKGL-STIVLSLIPVKRS 42 (660)
T ss_dssp EECSEEEECCSHHHHHHHHHHHTTTC-CEEEECSSCGGGS
T ss_pred ccccEEEECchHHHHHHHHHHHHCCC-cEEEEeccCCCCC
Confidence 46899999999999999999999999 7999999876644
No 100
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Probab=98.87 E-value=3.2e-09 Score=99.47 Aligned_cols=39 Identities=31% Similarity=0.297 Sum_probs=32.9
Q ss_pred CCCCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 22 PTSPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 22 ~~~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
+...+++||+|||||++||++|+.|++.|+ +|+|+|+.+
T Consensus 17 ~~~~~~~~vvIIG~G~aGl~aA~~l~~~g~-~v~vie~~~ 55 (338)
T 3itj_A 17 RGSHVHNKVTIIGSGPAAHTAAIYLARAEI-KPILYEGMM 55 (338)
T ss_dssp ----CEEEEEEECCSHHHHHHHHHHHHTTC-CCEEECCSS
T ss_pred CCCCCCCCEEEECcCHHHHHHHHHHHHCCC-CEEEEecCC
Confidence 344567999999999999999999999999 799999953
No 101
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1
Probab=98.86 E-value=6.3e-09 Score=102.99 Aligned_cols=53 Identities=19% Similarity=0.281 Sum_probs=43.6
Q ss_pred HHHHHHHHhhhcccccccCCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeec
Q 013178 227 SVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVS 285 (448)
Q Consensus 227 ~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p 285 (448)
.+...+.+.+++ .|++|+++++|++|+.+++++.|.+.+|+++.+|.||+|+.
T Consensus 224 ~~~~~l~~~l~~------~GV~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G 276 (499)
T 1xdi_A 224 DAALVLEESFAE------RGVRLFKNARAASVTRTGAGVLVTMTDGRTVEGSHALMTIG 276 (499)
T ss_dssp HHHHHHHHHHHH------TTCEEETTCCEEEEEECSSSEEEEETTSCEEEESEEEECCC
T ss_pred HHHHHHHHHHHH------CCCEEEeCCEEEEEEEeCCEEEEEECCCcEEEcCEEEECCC
Confidence 344555555554 59999999999999988777888888888999999999984
No 102
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}
Probab=98.85 E-value=1.2e-08 Score=98.53 Aligned_cols=54 Identities=24% Similarity=0.305 Sum_probs=43.9
Q ss_pred HHHHHHHHHhhhcccccccCCCceecCceeEEEEecCCcE-EEEeCCCcEEEeCEEEEeec
Q 013178 226 ESVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKV-TVKTEDGSVYQANYAIVSVS 285 (448)
Q Consensus 226 ~~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v-~V~~~~g~~~~ad~VI~a~p 285 (448)
..+.+.+.+.+++ .|++|+++++|++|+.+++++ .|.+.+|+++.||.||+|+.
T Consensus 194 ~~~~~~l~~~l~~------~GV~i~~~~~v~~i~~~~~~v~~v~l~dG~~i~aD~Vv~a~G 248 (415)
T 3lxd_A 194 EALSEFYQAEHRA------HGVDLRTGAAMDCIEGDGTKVTGVRMQDGSVIPADIVIVGIG 248 (415)
T ss_dssp HHHHHHHHHHHHH------TTCEEEETCCEEEEEESSSBEEEEEESSSCEEECSEEEECSC
T ss_pred HHHHHHHHHHHHh------CCCEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECCC
Confidence 3455555555554 599999999999999887776 58899999999999999986
No 103
>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*
Probab=98.84 E-value=4.3e-08 Score=97.97 Aligned_cols=57 Identities=14% Similarity=0.163 Sum_probs=44.1
Q ss_pred HHHHHHHHHhhhcccccccCCCceecCceeEEEEecCCc--EEEEeCCCcEEEeCEEEEeechhhc
Q 013178 226 ESVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDK--VTVKTEDGSVYQANYAIVSVSIGVL 289 (448)
Q Consensus 226 ~~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~--v~V~~~~g~~~~ad~VI~a~p~~~l 289 (448)
..+...|.+.+.+ .|++++.+ +|++|..++++ +.|.+.+|++++||.||.|......
T Consensus 165 ~~l~~~L~~~a~~------~gv~~~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~A~G~~s~ 223 (538)
T 2aqj_A 165 HLVADFLKRWAVE------RGVNRVVD-EVVDVRLNNRGYISNLLTKEGRTLEADLFIDCSGMRGL 223 (538)
T ss_dssp HHHHHHHHHHHHH------TTCEEEEC-CEEEEEECTTSCEEEEEETTSCEECCSEEEECCGGGCC
T ss_pred HHHHHHHHHHHHH------CCCEEEEe-eEeEEEEcCCCcEEEEEECCCcEEEeCEEEECCCCchh
Confidence 4456666666554 58999999 89999986544 5688888888999999999987543
No 104
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}
Probab=98.84 E-value=3.5e-08 Score=90.50 Aligned_cols=34 Identities=29% Similarity=0.486 Sum_probs=32.0
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
++||+|||||++||++|+.|++.|+ +|+|+|++.
T Consensus 2 ~~~vvIIG~G~aGl~aA~~l~~~g~-~v~lie~~~ 35 (297)
T 3fbs_A 2 KFDVIIIGGSYAGLSAALQLGRARK-NILLVDAGE 35 (297)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTC-CEEEEECCC
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCC-CEEEEeCCC
Confidence 5899999999999999999999999 799999964
No 105
>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*
Probab=98.82 E-value=2.6e-08 Score=97.48 Aligned_cols=39 Identities=26% Similarity=0.560 Sum_probs=36.5
Q ss_pred CcEEEECCChHHHHHHHHHHH---cCCCc---EEEEecCCCCCceE
Q 013178 28 NSVIIVGAGMSGFMAAKTLEE---AGYKD---FIILEASSRVGGRL 67 (448)
Q Consensus 28 ~dViIIGaGiaGL~aA~~L~~---~G~~~---V~vlE~~~~~GGr~ 67 (448)
+||+|||||++||+||..|++ .|. + |+|||+++.+||.+
T Consensus 3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~-~~~~V~v~E~~~~~GG~w 47 (464)
T 2xve_A 3 TRIAILGAGPSGMAQLRAFQSAQEKGA-EIPELVCFEKQADWGGQW 47 (464)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHHTTC-CCCEEEEECSSSSSCGGG
T ss_pred CcEEEECccHHHHHHHHHHHhhhhcCC-CCCcEEEEEcCCCCCCEe
Confidence 699999999999999999999 999 8 99999999999843
No 106
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*
Probab=98.82 E-value=2.8e-08 Score=91.20 Aligned_cols=38 Identities=42% Similarity=0.600 Sum_probs=35.5
Q ss_pred CCcEEEECCChHHHHHHHHHHHc--CCCcEEEEecCCCCCc
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEA--GYKDFIILEASSRVGG 65 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~--G~~~V~vlE~~~~~GG 65 (448)
.+||+|||||++||+||+.|++. |. +|+|+|+++.+||
T Consensus 65 ~~dv~IiG~G~aGl~aA~~la~~~~g~-~V~v~e~~~~~gg 104 (326)
T 2gjc_A 65 VSDVIIVGAGSSGLSAAYVIAKNRPDL-KVCIIESSVAPGG 104 (326)
T ss_dssp EESEEEECCSHHHHHHHHHHHHHCTTS-CEEEECSSSSCCT
T ss_pred cCCEEEECccHHHHHHHHHHHhcCCCC-eEEEEecCccccc
Confidence 45999999999999999999999 99 7999999998886
No 107
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Probab=98.82 E-value=2.7e-08 Score=84.09 Aligned_cols=40 Identities=20% Similarity=0.272 Sum_probs=36.1
Q ss_pred CCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeech
Q 013178 245 RDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSI 286 (448)
Q Consensus 245 ~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~ 286 (448)
.|++++++ +|++|+.+++++.|.+++| ++++|.||+|+..
T Consensus 69 ~gv~v~~~-~v~~i~~~~~~~~v~~~~g-~i~ad~vI~A~G~ 108 (180)
T 2ywl_A 69 YGAEVRPG-VVKGVRDMGGVFEVETEEG-VEKAERLLLCTHK 108 (180)
T ss_dssp TTCEEEEC-CCCEEEECSSSEEEECSSC-EEEEEEEEECCTT
T ss_pred cCCEEEeC-EEEEEEEcCCEEEEEECCC-EEEECEEEECCCC
Confidence 48999999 9999999888889999888 9999999999974
No 108
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Probab=98.80 E-value=1.6e-08 Score=96.63 Aligned_cols=53 Identities=15% Similarity=0.282 Sum_probs=44.8
Q ss_pred HHHHHHHHhhhcccccccCCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeec
Q 013178 227 SVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVS 285 (448)
Q Consensus 227 ~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p 285 (448)
.+.+.+.+.+.+ .|++|+++++|++|+.+++++.|.+.+|+++++|.||+|+.
T Consensus 188 ~~~~~l~~~l~~------~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vv~a~G 240 (384)
T 2v3a_A 188 AAAKAVQAGLEG------LGVRFHLGPVLASLKKAGEGLEAHLSDGEVIPCDLVVSAVG 240 (384)
T ss_dssp HHHHHHHHHHHT------TTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECSC
T ss_pred HHHHHHHHHHHH------cCCEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEECcC
Confidence 455666666655 59999999999999988888889999998999999999986
No 109
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}
Probab=98.80 E-value=5.9e-09 Score=102.50 Aligned_cols=55 Identities=15% Similarity=0.198 Sum_probs=45.1
Q ss_pred HHHHHHHHHhhhcccccccCCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeech
Q 013178 226 ESVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSI 286 (448)
Q Consensus 226 ~~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~ 286 (448)
..+.+.+.+.+.+ .|++|+++++|++|+.+++++.|.+.+|+++.+|.||+|+..
T Consensus 202 ~~~~~~l~~~l~~------~GV~i~~~~~v~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~ 256 (472)
T 3iwa_A 202 KSLSQMLRHDLEK------NDVVVHTGEKVVRLEGENGKVARVITDKRTLDADLVILAAGV 256 (472)
T ss_dssp HHHHHHHHHHHHH------TTCEEECSCCEEEEEESSSBEEEEEESSCEEECSEEEECSCE
T ss_pred HHHHHHHHHHHHh------cCCEEEeCCEEEEEEccCCeEEEEEeCCCEEEcCEEEECCCC
Confidence 3455556666555 599999999999999988888888889989999999999863
No 110
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}
Probab=98.80 E-value=3.2e-08 Score=93.92 Aligned_cols=42 Identities=29% Similarity=0.294 Sum_probs=37.1
Q ss_pred CCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeechh
Q 013178 245 RDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSIG 287 (448)
Q Consensus 245 ~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~ 287 (448)
.|++++++++|++|..+++++.|.+.+| ++.||+||+|+...
T Consensus 101 ~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~~d~vVlAtG~~ 142 (369)
T 3d1c_A 101 YELNIFENTVVTNISADDAYYTIATTTE-TYHADYIFVATGDY 142 (369)
T ss_dssp TTCEEECSCCEEEEEECSSSEEEEESSC-CEEEEEEEECCCST
T ss_pred cCCeEEeCCEEEEEEECCCeEEEEeCCC-EEEeCEEEECCCCC
Confidence 4889999999999999887888988887 79999999999753
No 111
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}
Probab=98.79 E-value=2.2e-08 Score=97.78 Aligned_cols=53 Identities=13% Similarity=0.241 Sum_probs=43.6
Q ss_pred HHHHHHHHHhhhcccccccCCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeec
Q 013178 226 ESVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVS 285 (448)
Q Consensus 226 ~~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p 285 (448)
..+.+.+.+.+.+ .|++|+++++|++|+..++++.|.+++| ++.+|.||+|++
T Consensus 189 ~~~~~~l~~~l~~------~GV~i~~~~~v~~i~~~~~~v~v~~~~g-~i~aD~Vv~A~G 241 (452)
T 3oc4_A 189 KEMVAEVQKSLEK------QAVIFHFEETVLGIEETANGIVLETSEQ-EISCDSGIFALN 241 (452)
T ss_dssp HHHHHHHHHHHHT------TTEEEEETCCEEEEEECSSCEEEEESSC-EEEESEEEECSC
T ss_pred HHHHHHHHHHHHH------cCCEEEeCCEEEEEEccCCeEEEEECCC-EEEeCEEEECcC
Confidence 3455566666655 5999999999999998888888888877 999999999985
No 112
>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*
Probab=98.79 E-value=6.5e-08 Score=96.08 Aligned_cols=56 Identities=11% Similarity=0.141 Sum_probs=43.8
Q ss_pred HHHHHHHHHhhhcccccccCCCceecCceeEEEEecCCc--EEEEeCCCcEEEeCEEEEeechhh
Q 013178 226 ESVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDK--VTVKTEDGSVYQANYAIVSVSIGV 288 (448)
Q Consensus 226 ~~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~--v~V~~~~g~~~~ad~VI~a~p~~~ 288 (448)
..+...|.+.+.+ .|++++.+ +|++|+.++++ +.|.+.+|++++||.||.|.....
T Consensus 173 ~~l~~~L~~~a~~------~gv~~~~~-~v~~i~~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S 230 (511)
T 2weu_A 173 DEVARYLSEYAIA------RGVRHVVD-DVQHVGQDERGWISGVHTKQHGEISGDLFVDCTGFRG 230 (511)
T ss_dssp HHHHHHHHHHHHH------TTCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECCGGGC
T ss_pred HHHHHHHHHHHHH------CCCEEEEC-eEeEEEEcCCCCEEEEEECCCCEEEcCEEEECCCcch
Confidence 3455556665554 58999999 99999986554 678888888899999999998754
No 113
>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*
Probab=98.79 E-value=1.7e-07 Score=94.39 Aligned_cols=39 Identities=23% Similarity=0.282 Sum_probs=35.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcC--CCcEEEEecCCCCCc
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAG--YKDFIILEASSRVGG 65 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G--~~~V~vlE~~~~~GG 65 (448)
..+||+|||||++||+||+.|++.| . +|+|||+....+|
T Consensus 4 ~~~DVvIVG~G~AGl~aAl~la~~G~~~-~V~vlEk~~~~~~ 44 (602)
T 1kf6_A 4 FQADLAIVGAGGAGLRAAIAAAQANPNA-KIALISKVYPMRS 44 (602)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHHCTTC-CEEEEESSCGGGS
T ss_pred ccCCEEEECCCHHHHHHHHHHHhcCCCC-cEEEEeCCCCCCC
Confidence 3589999999999999999999999 8 7999999876654
No 114
>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*
Probab=98.78 E-value=1.2e-08 Score=101.39 Aligned_cols=55 Identities=16% Similarity=0.170 Sum_probs=42.1
Q ss_pred HHHHHHHHhhhcccccccCCCceecCceeEEEEecCCcE-EEEeCCCcEEEeCEEEEeechh
Q 013178 227 SVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKV-TVKTEDGSVYQANYAIVSVSIG 287 (448)
Q Consensus 227 ~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v-~V~~~~g~~~~ad~VI~a~p~~ 287 (448)
.+...|.+.+.+. .|++| ++++|++|..++++| .|.+.+|.++.||.||+|+...
T Consensus 124 ~~~~~L~~~Le~~-----~GVeI-~~~~Vt~L~~e~g~V~GV~t~dG~~i~AdaVVLATG~~ 179 (637)
T 2zxi_A 124 RYREYMKKVCENQ-----ENLYI-KQEEVVDIIVKNNQVVGVRTNLGVEYKTKAVVVTTGTF 179 (637)
T ss_dssp HHHHHHHHHHHTC-----TTEEE-EESCEEEEEESSSBEEEEEETTSCEEECSEEEECCTTC
T ss_pred HHHHHHHHHHHhC-----CCCEE-EEeEEEEEEecCCEEEEEEECCCcEEEeCEEEEccCCC
Confidence 4555566655431 37888 578999999888876 4888899899999999999753
No 115
>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}
Probab=98.76 E-value=8.9e-08 Score=93.79 Aligned_cols=35 Identities=29% Similarity=0.570 Sum_probs=32.5
Q ss_pred cEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCc
Q 013178 29 SVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGG 65 (448)
Q Consensus 29 dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GG 65 (448)
||+|||||++||+||+.|++.|. +|+|+|+. ..||
T Consensus 1 DVvVIG~G~AGl~aA~~la~~G~-~V~viek~-~~~g 35 (472)
T 2e5v_A 1 MIYIIGSGIAGLSAGVALRRAGK-KVTLISKR-IDGG 35 (472)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTC-CEEEECSS-TTCS
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-CEEEEeCC-CCCc
Confidence 89999999999999999999999 79999998 5565
No 116
>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A
Probab=98.75 E-value=1.3e-08 Score=101.60 Aligned_cols=55 Identities=15% Similarity=0.224 Sum_probs=41.5
Q ss_pred HHHHHHHHhhhcccccccCCCceecCceeEEEEecCCcE-EEEeCCCcEEEeCEEEEeechh
Q 013178 227 SVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKV-TVKTEDGSVYQANYAIVSVSIG 287 (448)
Q Consensus 227 ~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v-~V~~~~g~~~~ad~VI~a~p~~ 287 (448)
.+...|.+.+.+. .|++| ++++|++|..++++| .|.+.+|.+++||.||+|+...
T Consensus 125 ~~~~~L~e~Le~~-----~GV~I-~~~~V~~L~~e~g~V~GV~t~dG~~I~Ad~VVLATGt~ 180 (651)
T 3ces_A 125 LYRQAVRTALENQ-----PNLMI-FQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTF 180 (651)
T ss_dssp HHHHHHHHHHHTC-----TTEEE-EECCEEEEEESSSBEEEEEETTSEEEEEEEEEECCSTT
T ss_pred HHHHHHHHHHHhC-----CCCEE-EEEEEEEEEecCCEEEEEEECCCCEEECCEEEEcCCCC
Confidence 3445555555431 37888 678999999887776 5888889889999999999754
No 117
>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A
Probab=98.75 E-value=1.2e-07 Score=94.75 Aligned_cols=56 Identities=14% Similarity=0.164 Sum_probs=44.0
Q ss_pred HHHHHHHHHhhhcccccccC-CCceecCceeEEEEecCCc--EEEEeCCCcEEEeCEEEEeechhh
Q 013178 226 ESVVHSVAKQFLSHRHQVIR-DPRLKLNKVVRNISYSKDK--VTVKTEDGSVYQANYAIVSVSIGV 288 (448)
Q Consensus 226 ~~l~~~l~~~l~~~~~~~~~-g~~i~~~~~V~~I~~~~~~--v~V~~~~g~~~~ad~VI~a~p~~~ 288 (448)
..+...|.+.+.+ . |++|+++ +|++|..++++ +.|.+.+|++++||.||.|+....
T Consensus 194 ~~l~~~L~~~~~~------~~Gv~i~~~-~V~~i~~~~~g~~~~v~~~~G~~i~ad~vI~A~G~~S 252 (550)
T 2e4g_A 194 HLVADFLRRFATE------KLGVRHVED-RVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRG 252 (550)
T ss_dssp HHHHHHHHHHHHH------HSCCEEEEC-CEEEEEECTTSCEEEEEETTSCEEECSEEEECCGGGC
T ss_pred HHHHHHHHHHHHh------cCCcEEEEC-eEeEEEEcCCCCEEEEEECCCCEEECCEEEECCCCch
Confidence 3466666666654 4 8999999 99999986544 678888898899999999998754
No 118
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}
Probab=98.75 E-value=1e-08 Score=98.62 Aligned_cols=55 Identities=16% Similarity=0.260 Sum_probs=44.6
Q ss_pred HHHHHHHHHhhhcccccccCCCceecCceeEEEEecCCcE-EEEeCCCcEEEeCEEEEeech
Q 013178 226 ESVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKV-TVKTEDGSVYQANYAIVSVSI 286 (448)
Q Consensus 226 ~~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v-~V~~~~g~~~~ad~VI~a~p~ 286 (448)
..+.+.+.+.+.+ .|++|+++++|++|+.+++++ .|.+.+|+++.||.||+|+..
T Consensus 184 ~~~~~~l~~~l~~------~GV~i~~~~~v~~i~~~~~~v~~V~~~dG~~i~aD~Vv~a~G~ 239 (404)
T 3fg2_P 184 PEISSYFHDRHSG------AGIRMHYGVRATEIAAEGDRVTGVVLSDGNTLPCDLVVVGVGV 239 (404)
T ss_dssp HHHHHHHHHHHHH------TTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSEEEECCCE
T ss_pred HHHHHHHHHHHHh------CCcEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECcCC
Confidence 3455556666555 599999999999999887776 488999999999999999863
No 119
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*
Probab=98.73 E-value=1.8e-08 Score=99.29 Aligned_cols=41 Identities=29% Similarity=0.616 Sum_probs=37.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceE
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRL 67 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~ 67 (448)
.++||+|||||++|+++|..|++.|+ +|+|+|+++.+||.+
T Consensus 4 ~~~dVvIIGgG~aGl~aA~~l~~~G~-~V~liE~~~~~GG~~ 44 (478)
T 1v59_A 4 KSHDVVIIGGGPAGYVAAIKAAQLGF-NTACVEKRGKLGGTC 44 (478)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTC-CEEEEESSSSSSHHH
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCCcCCcc
Confidence 46899999999999999999999999 799999988888844
No 120
>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*
Probab=98.72 E-value=5.7e-08 Score=89.83 Aligned_cols=41 Identities=17% Similarity=0.316 Sum_probs=35.6
Q ss_pred CCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeech
Q 013178 245 RDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSI 286 (448)
Q Consensus 245 ~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~ 286 (448)
.|+++++ ++|++|+.+++++.|.+.+|+++++|+||+|+..
T Consensus 72 ~~v~~~~-~~v~~i~~~~~~~~v~~~~g~~~~~~~vv~AtG~ 112 (311)
T 2q0l_A 72 FGLKHEM-TAVQRVSKKDSHFVILAEDGKTFEAKSVIIATGG 112 (311)
T ss_dssp TSCEEEC-SCEEEEEEETTEEEEEETTSCEEEEEEEEECCCE
T ss_pred cCCEEEE-EEEEEEEEcCCEEEEEEcCCCEEECCEEEECCCC
Confidence 4778888 7999999888888888888889999999999974
No 121
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
Probab=98.70 E-value=4.4e-08 Score=97.48 Aligned_cols=40 Identities=28% Similarity=0.444 Sum_probs=35.1
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCce
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGR 66 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr 66 (448)
...+||+|||||++||+||+.|++ |. +|+||||....||.
T Consensus 6 ~~~~DVvVVG~G~AGl~aAl~la~-G~-~V~vlEk~~~~~g~ 45 (540)
T 1chu_A 6 EHSCDVLIIGSGAAGLSLALRLAD-QH-QVIVLSKGPVTEGS 45 (540)
T ss_dssp SEECSEEEECCSHHHHHHHHHHTT-TS-CEEEECSSCTTC--
T ss_pred CCCCCEEEECccHHHHHHHHHHhc-CC-cEEEEECCCCCCCC
Confidence 456899999999999999999999 99 79999999877764
No 122
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*
Probab=98.69 E-value=5.1e-08 Score=95.59 Aligned_cols=38 Identities=24% Similarity=0.308 Sum_probs=35.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcC-----CCcEEEEecCCCCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAG-----YKDFIILEASSRVG 64 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G-----~~~V~vlE~~~~~G 64 (448)
..+||+|||||++||++|..|++.| . +|+|||+++.+|
T Consensus 29 ~~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~-~v~liE~~~~~g 71 (463)
T 3s5w_A 29 VVHDLIGVGFGPSNIALAIALQERAQAQGAL-EVLFLDKQGDYR 71 (463)
T ss_dssp CEESEEEECCSHHHHHHHHHHHHHHHHHCCC-CEEEEESCSSCC
T ss_pred CcCCEEEECCCHHHHHHHHHHHhcccccCcc-cEEEEecCCCCC
Confidence 4579999999999999999999999 8 799999998887
No 123
>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}
Probab=98.68 E-value=2.2e-08 Score=99.96 Aligned_cols=41 Identities=27% Similarity=0.430 Sum_probs=34.6
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC-CCCc
Q 013178 24 SPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS-RVGG 65 (448)
Q Consensus 24 ~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~-~~GG 65 (448)
...++||+|||||++|++||+.|++.|. +|+|+|++. .+|+
T Consensus 18 ~~~~yDVIVIGgG~AGl~AAlaLAr~G~-kVlLIEk~~~~iG~ 59 (641)
T 3cp8_A 18 GSHMYDVIVVGAGHAGCEAALAVARGGL-HCLLITSDLSAVAR 59 (641)
T ss_dssp --CCEEEEEECCSHHHHHHHHHHHHTTC-CEEEEESCGGGTTC
T ss_pred ccCcCCEEEECccHHHHHHHHHHHHCCC-cEEEEEecccccCC
Confidence 3457999999999999999999999999 799999974 3443
No 124
>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}
Probab=98.68 E-value=1.6e-07 Score=93.50 Aligned_cols=56 Identities=7% Similarity=-0.018 Sum_probs=40.9
Q ss_pred HHHHHHHHhhhcccccccCCCceecCceeEEEEecCCc--EEEEeCCCcEEEeCEEEEeechhh
Q 013178 227 SVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDK--VTVKTEDGSVYQANYAIVSVSIGV 288 (448)
Q Consensus 227 ~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~--v~V~~~~g~~~~ad~VI~a~p~~~ 288 (448)
.+...|.+.+.+. .|++++.+ .|++|+.++++ +.|.+.+|.+++||.||.|.....
T Consensus 176 ~l~~~L~~~a~~~-----~Gv~i~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~AdG~~S 233 (526)
T 2pyx_A 176 KFSQLLTEHCTQK-----LGVTHIRD-HVSQIINNQHGDIEKLITKQNGEISGQLFIDCTGAKS 233 (526)
T ss_dssp HHHHHHHHHHHHT-----SCCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECSGGGC
T ss_pred HHHHHHHHHHHhc-----CCCEEEEe-EEEEEEecCCCcEEEEEECCCCEEEcCEEEECCCcch
Confidence 3445555554321 38899999 59999987544 467888877899999999998754
No 125
>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}
Probab=98.67 E-value=1.1e-08 Score=95.28 Aligned_cols=69 Identities=29% Similarity=0.396 Sum_probs=49.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHH--cCCCcEEEEecCCCCCceEEEceeCCceeeecceeccCCCCCCCHHHHHHHHcCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEE--AGYKDFIILEASSRVGGRLHKGNIGGHTIELGANWVNSGGPKSSPSLQIAKKIKL 103 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~--~G~~~V~vlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~l~~~lgl 103 (448)
..+||+|||||+|||+||++|++ .|+ +|+|||+++.+||.+... ++.+. ... ....+..+++++|+
T Consensus 64 ~~~DV~IIGaGPAGlsAA~~la~~r~G~-~V~viEk~~~~GG~~~~~---~~~~~--~~~------l~~~~~~~~~e~Gv 131 (326)
T 3fpz_A 64 AVSDVIIVGAGSSGLSAAYVIAKNRPDL-KVCIIESSVAPGGGSWLG---GQLFS--AMV------MRKPAHLFLQELEI 131 (326)
T ss_dssp TEESEEEECCSHHHHHHHHHHHHHCTTS-CEEEECSSSSCCTTTTCC---STTCC--CEE------EETTTHHHHHHTTC
T ss_pred cCCCEEEECCCHHHHHHHHHHHHhCCCC-eEEEEECCCCCCceEEeC---CccCC--HHH------HHHHHHHHHHHcCC
Confidence 45799999999999999999986 499 799999999999966432 11110 011 11235667788887
Q ss_pred cee
Q 013178 104 KTF 106 (448)
Q Consensus 104 ~~~ 106 (448)
+..
T Consensus 132 ~~~ 134 (326)
T 3fpz_A 132 PYE 134 (326)
T ss_dssp CCE
T ss_pred EEE
Confidence 643
No 126
>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*
Probab=98.66 E-value=1.2e-07 Score=88.61 Aligned_cols=41 Identities=15% Similarity=0.196 Sum_probs=35.0
Q ss_pred CCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeechh
Q 013178 245 RDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSIG 287 (448)
Q Consensus 245 ~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~~ 287 (448)
.|+++++++ |++|+.+++.+.|.+ +|.++++|+||+|+...
T Consensus 83 ~gv~~~~~~-v~~i~~~~~~~~v~~-~~~~~~~~~vv~A~G~~ 123 (333)
T 1vdc_A 83 FGTTIFTET-VTKVDFSSKPFKLFT-DSKAILADAVILAIGAV 123 (333)
T ss_dssp TTCEEECCC-CCEEECSSSSEEEEC-SSEEEEEEEEEECCCEE
T ss_pred CCCEEEEeE-EEEEEEcCCEEEEEE-CCcEEEcCEEEECCCCC
Confidence 478999987 999998888888888 77789999999998643
No 127
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Probab=98.66 E-value=1.5e-07 Score=86.96 Aligned_cols=42 Identities=17% Similarity=0.170 Sum_probs=35.7
Q ss_pred CCCceecCceeEEEEecC---CcEEEEeCCCcEEEeCEEEEeech
Q 013178 245 RDPRLKLNKVVRNISYSK---DKVTVKTEDGSVYQANYAIVSVSI 286 (448)
Q Consensus 245 ~g~~i~~~~~V~~I~~~~---~~v~V~~~~g~~~~ad~VI~a~p~ 286 (448)
.|++++++++|++|..+. +.+.|.+++|++++||+||+|+..
T Consensus 69 ~~v~~~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~ 113 (310)
T 1fl2_A 69 YDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGA 113 (310)
T ss_dssp SCEEEECSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCE
T ss_pred cCCeEEccCEEEEEEecccCCceEEEEECCCCEEEeCEEEECcCC
Confidence 478899999999998653 368888988889999999999974
No 128
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Probab=98.63 E-value=9e-08 Score=96.32 Aligned_cols=36 Identities=22% Similarity=0.348 Sum_probs=33.6
Q ss_pred CcEEEECCChHHHHHHHHHHHc--CCCcEEEEecCCCCC
Q 013178 28 NSVIIVGAGMSGFMAAKTLEEA--GYKDFIILEASSRVG 64 (448)
Q Consensus 28 ~dViIIGaGiaGL~aA~~L~~~--G~~~V~vlE~~~~~G 64 (448)
+||+|||||++||+||+.|++. |. +|+|+|+++.++
T Consensus 2 ~~VvIIGgG~AGl~aA~~L~~~~~~~-~V~lie~~~~~~ 39 (565)
T 3ntd_A 2 KKILIIGGVAGGASAAARARRLSETA-EIIMFERGEYVS 39 (565)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCSSS-EEEEECSSSCSS
T ss_pred CcEEEECCCHHHHHHHHHHHhhCcCC-CEEEEECCCCcc
Confidence 6899999999999999999998 77 899999998876
No 129
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A
Probab=98.63 E-value=2.1e-07 Score=92.34 Aligned_cols=42 Identities=14% Similarity=0.169 Sum_probs=35.9
Q ss_pred CCCceecCceeEEEEec---CCcEEEEeCCCcEEEeCEEEEeech
Q 013178 245 RDPRLKLNKVVRNISYS---KDKVTVKTEDGSVYQANYAIVSVSI 286 (448)
Q Consensus 245 ~g~~i~~~~~V~~I~~~---~~~v~V~~~~g~~~~ad~VI~a~p~ 286 (448)
.|++++.+++|++|..+ ++.+.|.+.+|.+++||+||+|+..
T Consensus 280 ~gv~v~~~~~v~~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~ 324 (521)
T 1hyu_A 280 YDVDVIDSQSASKLVPAATEGGLHQIETASGAVLKARSIIIATGA 324 (521)
T ss_dssp SCEEEECSCCEEEEECCSSTTSCEEEEETTSCEEEEEEEEECCCE
T ss_pred cCCEEEcCCEEEEEEeccCCCceEEEEECCCCEEEcCEEEECCCC
Confidence 48899999999999864 2368898989989999999999975
No 130
>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*
Probab=98.62 E-value=5.3e-07 Score=91.71 Aligned_cols=36 Identities=25% Similarity=0.463 Sum_probs=33.0
Q ss_pred CCCcEEEECCChHHHHHHHHHH---H-cCCCcEEEEecCCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLE---E-AGYKDFIILEASSR 62 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~---~-~G~~~V~vlE~~~~ 62 (448)
..+||+|||||++||+||+.|+ + .|. +|+||||...
T Consensus 21 ~~~DVvVIG~G~AGl~AAl~aa~~~~~~G~-~V~vlEK~~~ 60 (643)
T 1jnr_A 21 VETDILIIGGGFSGCGAAYEAAYWAKLGGL-KVTLVEKAAV 60 (643)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHHHTTTTC-CEEEECSSCT
T ss_pred ccCCEEEECcCHHHHHHHHHHhhhhhhCCC-eEEEEeCcCC
Confidence 4689999999999999999999 6 899 7999999875
No 131
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=98.61 E-value=2.1e-07 Score=90.88 Aligned_cols=40 Identities=30% Similarity=0.521 Sum_probs=36.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceE
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRL 67 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~ 67 (448)
.++||+|||||++|++||..|++.|. +|+|+|++ .+||.+
T Consensus 2 ~~~dvvIIGgG~aGl~aA~~l~~~g~-~V~lie~~-~~gG~~ 41 (455)
T 1ebd_A 2 IETETLVVGAGPGGYVAAIRAAQLGQ-KVTIVEKG-NLGGVC 41 (455)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHTTC-CEEEEESS-CTTHHH
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCC-eEEEEECC-CCCCcC
Confidence 35899999999999999999999999 79999998 788743
No 132
>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Probab=98.60 E-value=2.2e-07 Score=90.04 Aligned_cols=53 Identities=19% Similarity=0.228 Sum_probs=41.8
Q ss_pred HHHHHHHHhhhcccccccCCCceecCceeEEEEe--cCCcE-EEEeCCCcEEEeCEEEEeec
Q 013178 227 SVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISY--SKDKV-TVKTEDGSVYQANYAIVSVS 285 (448)
Q Consensus 227 ~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~--~~~~v-~V~~~~g~~~~ad~VI~a~p 285 (448)
.+.+.+.+.+++ .|++|+++++|++|+. +++++ .|.+.+|+++.+|.||+|++
T Consensus 192 ~~~~~l~~~l~~------~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~Vv~a~G 247 (431)
T 1q1r_A 192 PVSAFYEHLHRE------AGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIG 247 (431)
T ss_dssp HHHHHHHHHHHH------HTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCC
T ss_pred HHHHHHHHHHHh------CCeEEEeCCEEEEEEeccCCCcEEEEEeCCCCEEEcCEEEECCC
Confidence 344455555544 5999999999999997 55666 68888998999999999986
No 133
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=98.59 E-value=4.4e-08 Score=96.61 Aligned_cols=40 Identities=28% Similarity=0.460 Sum_probs=36.9
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEE
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLH 68 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~ 68 (448)
++||+|||||++||+||+.|++. . +|+|||+++++||.+.
T Consensus 108 ~~dVvIIGgG~aGl~aA~~L~~~-~-~V~vie~~~~~GG~~~ 147 (493)
T 1y56_A 108 VVDVAIIGGGPAGIGAALELQQY-L-TVALIEERGWLGGDMW 147 (493)
T ss_dssp EESCCEECCSHHHHHHHHHHTTT-C-CEEEECTTSSSSCSGG
T ss_pred cCCEEEECccHHHHHHHHHHHhc-C-CEEEEeCCCCCCCeee
Confidence 46999999999999999999999 8 8999999999998654
No 134
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*
Probab=98.59 E-value=7.3e-08 Score=94.46 Aligned_cols=39 Identities=31% Similarity=0.498 Sum_probs=35.4
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceE
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRL 67 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~ 67 (448)
++||+|||||++|++||..|++.|. +|+|+|++ .+||.+
T Consensus 3 ~~dvvIIGaG~aGl~aA~~l~~~G~-~V~liE~~-~~gG~~ 41 (464)
T 2a8x_A 3 HYDVVVLGAGPGGYVAAIRAAQLGL-STAIVEPK-YWGGVC 41 (464)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSS-CTTHHH
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCC-eEEEEeCC-CCCCcc
Confidence 5899999999999999999999999 79999998 677643
No 135
>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}
Probab=98.58 E-value=2.7e-08 Score=92.14 Aligned_cols=42 Identities=26% Similarity=0.425 Sum_probs=37.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEE
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHK 69 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s 69 (448)
.+|||+|||||+|||+||.+|++.|+ +|+|+|++ .+||.|..
T Consensus 5 ~~yDvvIIG~GpAGl~aA~~l~~~g~-~V~liE~~-~~gG~~~~ 46 (312)
T 4gcm_A 5 IDFDIAIIGAGPAGMTAAVYASRANL-KTVMIERG-IPGGQMAN 46 (312)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHTTC-CEEEEESS-CTTGGGGG
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCC-CEEEEecC-CCCCeeec
Confidence 47999999999999999999999999 79999985 78887643
No 136
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*
Probab=98.57 E-value=7.5e-08 Score=92.71 Aligned_cols=52 Identities=17% Similarity=0.164 Sum_probs=41.8
Q ss_pred HHHHHHHhhhcccccccCCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeec
Q 013178 228 VVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVS 285 (448)
Q Consensus 228 l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p 285 (448)
+.+.+.+.+.+ .|++|++++.|++|+.+++...|.+.+|+++.||.||+|++
T Consensus 187 ~~~~l~~~l~~------~GV~i~~~~~v~~i~~~~~~~~v~~~dg~~i~aD~Vv~a~G 238 (410)
T 3ef6_A 187 IGAWLRGLLTE------LGVQVELGTGVVGFSGEGQLEQVMASDGRSFVADSALICVG 238 (410)
T ss_dssp HHHHHHHHHHH------HTCEEECSCCEEEEECSSSCCEEEETTSCEEECSEEEECSC
T ss_pred HHHHHHHHHHH------CCCEEEeCCEEEEEeccCcEEEEEECCCCEEEcCEEEEeeC
Confidence 44445555544 59999999999999987655578899999999999999986
No 137
>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*
Probab=98.57 E-value=1.5e-07 Score=96.00 Aligned_cols=62 Identities=29% Similarity=0.322 Sum_probs=45.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHH-----cCCCcEEEEecCCCCCceEEEceeCCceeeecceeccCCCCCCCHHHHHHHH
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEE-----AGYKDFIILEASSRVGGRLHKGNIGGHTIELGANWVNSGGPKSSPSLQIAKK 100 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~-----~G~~~V~vlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~l~~~ 100 (448)
.++||+|||||++||++|..|++ .|+ +|+|||++..... .|... . .+....+++++
T Consensus 7 ~~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi-~v~viE~~~~~~~-------------~gra~--~---l~~~tle~l~~ 67 (665)
T 1pn0_A 7 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDL-KVRIIDKRSTKVY-------------NGQAD--G---LQCRTLESLKN 67 (665)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHHHHHSTTC-CEEEECSSSSCCC-------------SCSCC--E---ECHHHHHHHHT
T ss_pred CCCcEEEECcCHHHHHHHHHHhccccccCCC-CEEEEeCCCCCCC-------------CCcee--E---EChHHHHHHHH
Confidence 36899999999999999999999 999 7999999754320 01000 0 23456788888
Q ss_pred cCCcee
Q 013178 101 IKLKTF 106 (448)
Q Consensus 101 lgl~~~ 106 (448)
+|+...
T Consensus 68 lGl~~~ 73 (665)
T 1pn0_A 68 LGLADK 73 (665)
T ss_dssp TTCHHH
T ss_pred CCCHHH
Confidence 887643
No 138
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*
Probab=98.55 E-value=1.4e-07 Score=95.21 Aligned_cols=40 Identities=20% Similarity=0.286 Sum_probs=34.7
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHc--CCCcEEEEecCCCCC
Q 013178 24 SPPSNSVIIVGAGMSGFMAAKTLEEA--GYKDFIILEASSRVG 64 (448)
Q Consensus 24 ~~~~~dViIIGaGiaGL~aA~~L~~~--G~~~V~vlE~~~~~G 64 (448)
..+++||+|||||++||+||+.|++. |. +|+|+|+++.+|
T Consensus 33 ~~~~~~VvIIGgG~AGl~aA~~L~~~~~g~-~V~vie~~~~~~ 74 (588)
T 3ics_A 33 RWGSRKIVVVGGVAGGASVAARLRRLSEED-EIIMVERGEYIS 74 (588)
T ss_dssp -CCCCEEEEECCSHHHHHHHHHHHHHCSSS-EEEEECSSSCSS
T ss_pred cccCCCEEEECCcHHHHHHHHHHHhhCcCC-CEEEEECCCCcc
Confidence 34568999999999999999999999 78 899999987553
No 139
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}
Probab=98.55 E-value=1.5e-07 Score=89.65 Aligned_cols=40 Identities=28% Similarity=0.419 Sum_probs=33.3
Q ss_pred CCCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCC
Q 013178 23 TSPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRV 63 (448)
Q Consensus 23 ~~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~ 63 (448)
...++++|+|||||+||++||..|.+.+. +|+|+|+++.+
T Consensus 5 ~~~~~~~~vIvGgG~AGl~aA~~L~~~~~-~itlie~~~~~ 44 (385)
T 3klj_A 5 HHHKSTKILILGAGPAGFSAAKAALGKCD-DITMINSEKYL 44 (385)
T ss_dssp ---CBCSEEEECCSHHHHHHHHHHTTTCS-CEEEECSSSSC
T ss_pred cccCCCCEEEEcCcHHHHHHHHHHhCCCC-EEEEEECCCCC
Confidence 34678899999999999999999977788 89999998643
No 140
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Probab=98.53 E-value=5.5e-08 Score=89.70 Aligned_cols=41 Identities=20% Similarity=0.288 Sum_probs=34.7
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCce
Q 013178 24 SPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGR 66 (448)
Q Consensus 24 ~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr 66 (448)
..++|||+|||||+|||+||.+|+++|+ +|+|+|++ ..||.
T Consensus 3 ~M~~yDVvIIGaGpAGlsAA~~lar~g~-~v~lie~~-~~gg~ 43 (304)
T 4fk1_A 3 AMKYIDCAVIGAGPAGLNASLVLGRARK-QIALFDNN-TNRNR 43 (304)
T ss_dssp ---CEEEEEECCSHHHHHHHHHHHHTTC-CEEEEECS-CCGGG
T ss_pred CCCCcCEEEECCCHHHHHHHHHHHHCCC-CEEEEeCC-CCCCe
Confidence 3567999999999999999999999999 79999986 45664
No 141
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*
Probab=98.51 E-value=9.4e-08 Score=90.48 Aligned_cols=40 Identities=25% Similarity=0.435 Sum_probs=35.5
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCC
Q 013178 24 SPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVG 64 (448)
Q Consensus 24 ~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~G 64 (448)
|.+++||+|||||++|+++|++|+++|. +|+|||+....+
T Consensus 3 m~~~~dVvVIG~Gi~Gls~A~~La~~G~-~V~vle~~~~~~ 42 (363)
T 1c0p_A 3 MHSQKRVVVLGSGVIGLSSALILARKGY-SVHILARDLPED 42 (363)
T ss_dssp CCCSCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSCTTC
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHhCCC-EEEEEeccCCCC
Confidence 3467899999999999999999999999 899999986443
No 142
>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}
Probab=98.47 E-value=1e-07 Score=94.07 Aligned_cols=44 Identities=23% Similarity=0.445 Sum_probs=38.3
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEE
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHK 69 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s 69 (448)
.+++||+|||||++||+||..|++.|. +|+|+|+++.+||.|..
T Consensus 23 m~~~dVvVIGgG~aGl~aA~~la~~G~-~V~liEk~~~~GG~~~~ 66 (491)
T 3urh_A 23 MMAYDLIVIGSGPGGYVCAIKAAQLGM-KVAVVEKRSTYGGTCLN 66 (491)
T ss_dssp ---CCEEEECCSHHHHHHHHHHHHTTC-CEEEEESSSSSSHHHHH
T ss_pred cccCCEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCCCCCcccc
Confidence 456999999999999999999999999 79999999999996543
No 143
>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*
Probab=98.46 E-value=7.3e-08 Score=89.19 Aligned_cols=36 Identities=22% Similarity=0.315 Sum_probs=33.3
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
...|||+|||||+|||+||.+|++.|+ +|+|+|+..
T Consensus 2 ~~~yDvvIIG~GpAGl~AA~~la~~g~-~v~liE~~~ 37 (314)
T 4a5l_A 2 SNIHDVVIIGSGPAAHTAAIYLGRSSL-KPVMYEGFM 37 (314)
T ss_dssp CCCEEEEEECCSHHHHHHHHHHHHTTC-CCEEECCSS
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCC-CEEEEecCC
Confidence 457999999999999999999999999 799999964
No 144
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}
Probab=98.46 E-value=5.2e-08 Score=95.50 Aligned_cols=43 Identities=26% Similarity=0.520 Sum_probs=39.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEE
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHK 69 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s 69 (448)
+++||+|||||++|++||..|++.|. +|+|+|+++.+||.+..
T Consensus 3 ~~~DVvVIGgG~aGl~aA~~l~~~G~-~V~liEk~~~~GG~~~~ 45 (466)
T 3l8k_A 3 LKYDVVVIGAGGAGYHGAFRLAKAKY-NVLMADPKGELGGNCLY 45 (466)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTC-CEEEECTTSSSSHHHHH
T ss_pred ccceEEEECCCHHHHHHHHHHHhCCC-eEEEEECCCCCCCcccc
Confidence 46899999999999999999999999 79999999999997653
No 145
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}
Probab=98.44 E-value=9e-08 Score=88.85 Aligned_cols=43 Identities=35% Similarity=0.544 Sum_probs=37.6
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEE
Q 013178 24 SPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLH 68 (448)
Q Consensus 24 ~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~ 68 (448)
+..++||+|||||++|+++|+.|++.|+ +|+|+|+ ..+||.+.
T Consensus 13 m~~~~dvvIIG~G~aGl~aA~~l~~~g~-~v~lie~-~~~gg~~~ 55 (319)
T 3cty_A 13 KERDFDVVIVGAGAAGFSAAVYAARSGF-SVAILDK-AVAGGLTA 55 (319)
T ss_dssp -CCEEEEEEECCSHHHHHHHHHHHHTTC-CEEEEES-SSTTGGGG
T ss_pred ccCCCcEEEECcCHHHHHHHHHHHhCCC-cEEEEeC-CCCCcccc
Confidence 4457899999999999999999999999 7999999 47888654
No 146
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Probab=98.43 E-value=2e-07 Score=90.60 Aligned_cols=43 Identities=35% Similarity=0.573 Sum_probs=39.4
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceE
Q 013178 24 SPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRL 67 (448)
Q Consensus 24 ~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~ 67 (448)
....+||+|||||++||+||+.|++.|+ +|+|||+.+.+||..
T Consensus 119 ~~~~~~V~IIGgGpAGl~aA~~L~~~G~-~V~v~e~~~~~GG~l 161 (456)
T 2vdc_G 119 RELGLSVGVIGAGPAGLAAAEELRAKGY-EVHVYDRYDRMGGLL 161 (456)
T ss_dssp SSCCCCEEEECCSHHHHHHHHHHHHHTC-CEEEECSSSSCSTHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCCCCCee
Confidence 3567899999999999999999999999 799999999999853
No 147
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}
Probab=98.41 E-value=2e-07 Score=86.04 Aligned_cols=39 Identities=36% Similarity=0.551 Sum_probs=36.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHHc--CCCcEEEEecCCCCCc
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEA--GYKDFIILEASSRVGG 65 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~--G~~~V~vlE~~~~~GG 65 (448)
..+||+|||||++||++|+.|++. |. +|+|+|++..+||
T Consensus 78 ~~~DVvIVGgG~AGL~aA~~La~~~~G~-~V~LiEk~~~~GG 118 (344)
T 3jsk_A 78 AETDIVIVGAGSCGLSAAYVLSTLRPDL-RITIVEAGVAPGG 118 (344)
T ss_dssp HBCSEEEECCSHHHHHHHHHHHHHCTTS-CEEEEESSSSCCT
T ss_pred CcCCEEEECccHHHHHHHHHHHhcCCCC-EEEEEeCCCccCC
Confidence 468999999999999999999998 99 7999999988876
No 148
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*
Probab=98.41 E-value=1.7e-07 Score=93.13 Aligned_cols=46 Identities=22% Similarity=0.387 Sum_probs=41.4
Q ss_pred CCCCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEE
Q 013178 22 PTSPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLH 68 (448)
Q Consensus 22 ~~~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~ 68 (448)
+.++.++||+|||||++|++||+.|++.|. +|+|+|+++.+||.+.
T Consensus 38 ~~~~~~~dVvIIGgG~aGl~aA~~l~~~G~-~V~liE~~~~~GG~~~ 83 (523)
T 1mo9_A 38 ENDPREYDAIFIGGGAAGRFGSAYLRAMGG-RQLIVDRWPFLGGSCP 83 (523)
T ss_dssp TTCCSCBSEEEECCSHHHHHHHHHHHHTTC-CEEEEESSSSSSCHHH
T ss_pred CCCCCcCCEEEECCCHHHHHHHHHHHHCCC-CEEEEeCCCCCCCccc
Confidence 445678999999999999999999999999 7999999988998764
No 149
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Probab=98.37 E-value=2e-07 Score=92.59 Aligned_cols=47 Identities=26% Similarity=0.427 Sum_probs=40.1
Q ss_pred CCCCCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC--------CCCceEE
Q 013178 21 APTSPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS--------RVGGRLH 68 (448)
Q Consensus 21 ~~~~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~--------~~GGr~~ 68 (448)
.|.+..++||+|||||++|++||..|++.|. +|+|+|+++ .+||.|.
T Consensus 26 ~~~~~~~~DVvVIGgGpaGl~aA~~la~~G~-~V~liEk~~~~~~~~~~~~GGtc~ 80 (519)
T 3qfa_A 26 DLPKSYDYDLIIIGGGSGGLAAAKEAAQYGK-KVMVLDFVTPTPLGTRWGLGGTCV 80 (519)
T ss_dssp CCCSSCSEEEEEECCSHHHHHHHHHHHHTTC-CEEEECCCCCCTTCCCCCTTCHHH
T ss_pred ccCcCCCCCEEEECCCHHHHHHHHHHHhCCC-eEEEEeccCccccccCCCcccccC
Confidence 3455567999999999999999999999999 799999964 6788654
No 150
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}
Probab=98.37 E-value=1.8e-07 Score=87.08 Aligned_cols=43 Identities=30% Similarity=0.433 Sum_probs=38.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEE
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHK 69 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s 69 (448)
.+++||+|||||++||++|..|++.|+ +|+|+|++ .+||.+..
T Consensus 6 ~~~~dvvIIG~G~aGl~aA~~l~~~g~-~v~lie~~-~~gg~~~~ 48 (325)
T 2q7v_A 6 AHDYDVVIIGGGPAGLTAAIYTGRAQL-STLILEKG-MPGGQIAW 48 (325)
T ss_dssp CEEEEEEEECCSHHHHHHHHHHHHTTC-CEEEEESS-CTTGGGGG
T ss_pred cccCCEEEECCCHHHHHHHHHHHHcCC-cEEEEeCC-CCCccccc
Confidence 346899999999999999999999999 79999998 78887643
No 151
>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}
Probab=98.36 E-value=1.5e-07 Score=92.25 Aligned_cols=41 Identities=22% Similarity=0.360 Sum_probs=37.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEE
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLH 68 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~ 68 (448)
.++||+|||||++||+||+.|++.|+ +|+|+|+ +.+||.+.
T Consensus 4 ~~~DVvVIGaG~aGl~aA~~la~~G~-~V~liEk-~~~GG~~~ 44 (463)
T 4dna_A 4 FDYDLFVIGGGSGGVRSGRLAAALGK-KVAIAEE-FRYGGTCV 44 (463)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHTTTC-CEEEEES-SCTTHHHH
T ss_pred CCCcEEEECcCHHHHHHHHHHHhCCC-EEEEEeC-CCCCCccc
Confidence 46899999999999999999999999 7999999 78998654
No 152
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*
Probab=98.35 E-value=3.2e-07 Score=90.17 Aligned_cols=40 Identities=28% Similarity=0.467 Sum_probs=36.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCce
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGR 66 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr 66 (448)
+++||+|||||++||+||+.|++.|+ +|+|+|++..+||+
T Consensus 2 ~~~DVvVIGgG~aGl~aA~~la~~G~-~V~liEk~~~~gG~ 41 (476)
T 3lad_A 2 QKFDVIVIGAGPGGYVAAIKSAQLGL-KTALIEKYKGKEGK 41 (476)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHHTC-CEEEEECCBCTTSS
T ss_pred CcCCEEEECcCHHHHHHHHHHHhCCC-EEEEEeCCCccCCC
Confidence 57999999999999999999999999 79999999866664
No 153
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}
Probab=98.33 E-value=4.5e-07 Score=93.18 Aligned_cols=45 Identities=40% Similarity=0.711 Sum_probs=40.9
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEE
Q 013178 24 SPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHK 69 (448)
Q Consensus 24 ~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s 69 (448)
...++||+|||||++||+||+.|++.|+ +|+|+|+++.+||.+..
T Consensus 388 ~~~~~~VvIIGgG~AGl~aA~~La~~G~-~V~liE~~~~~GG~~~~ 432 (690)
T 3k30_A 388 KESDARVLVVGAGPSGLEAARALGVRGY-DVVLAEAGRDLGGRVTQ 432 (690)
T ss_dssp CSSCCEEEEECCSHHHHHHHHHHHHHTC-EEEEECSSSSSCTHHHH
T ss_pred ccccceEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCCCCCEeee
Confidence 4567899999999999999999999999 89999999999997654
No 154
>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*
Probab=98.33 E-value=2.4e-07 Score=87.18 Aligned_cols=37 Identities=22% Similarity=0.284 Sum_probs=32.8
Q ss_pred CcEEEECCChHHHHHHHHHHHcC------CCcEEEEecCCCCCc
Q 013178 28 NSVIIVGAGMSGFMAAKTLEEAG------YKDFIILEASSRVGG 65 (448)
Q Consensus 28 ~dViIIGaGiaGL~aA~~L~~~G------~~~V~vlE~~~~~GG 65 (448)
+||+|||||++||++|++|+++| . +|+|||++...+|
T Consensus 1 mdVvIIGgGi~Gls~A~~La~~G~~~~p~~-~V~vlE~~~~~~~ 43 (351)
T 3g3e_A 1 MRVVVIGAGVIGLSTALCIHERYHSVLQPL-DIKVYADRFTPLT 43 (351)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHTTTSSSC-EEEEEESSCGGGS
T ss_pred CcEEEECCCHHHHHHHHHHHHhccccCCCc-eEEEEECCCCCCC
Confidence 49999999999999999999998 8 8999999864433
No 155
>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}
Probab=98.32 E-value=3.3e-07 Score=84.64 Aligned_cols=42 Identities=24% Similarity=0.420 Sum_probs=37.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEE-EecCCCCCceEE
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFII-LEASSRVGGRLH 68 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~v-lE~~~~~GGr~~ 68 (448)
..++||+|||||++||+||+.|++.|+ +|+| +|+ +.+||.+.
T Consensus 2 ~~~~~vvIIG~G~aGl~aA~~l~~~g~-~v~li~e~-~~~gG~~~ 44 (315)
T 3r9u_A 2 NAMLDVAIIGGGPAGLSAGLYATRGGL-KNVVMFEK-GMPGGQIT 44 (315)
T ss_dssp CSCEEEEEECCSHHHHHHHHHHHHHTC-SCEEEECS-SSTTGGGG
T ss_pred CCCceEEEECCCHHHHHHHHHHHHCCC-CeEEEEeC-CCCCceee
Confidence 356899999999999999999999999 7999 999 67888654
No 156
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...
Probab=98.31 E-value=2.3e-07 Score=91.27 Aligned_cols=43 Identities=23% Similarity=0.474 Sum_probs=38.2
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEE
Q 013178 24 SPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLH 68 (448)
Q Consensus 24 ~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~ 68 (448)
+..++||+|||||++||+||+.|++.|. +|+|+|++ .+||.|.
T Consensus 17 ~~~~~dVvIIGgG~aGl~aA~~la~~G~-~V~liE~~-~~GG~~~ 59 (478)
T 3dk9_A 17 AVASYDYLVIGGGSGGLASARRAAELGA-RAAVVESH-KLGGTCV 59 (478)
T ss_dssp CEEECSEEEECCSHHHHHHHHHHHHTTC-CEEEEESS-CTTHHHH
T ss_pred cCCCCCEEEECCCHHHHHHHHHHHhCCC-eEEEEecC-CCCCccc
Confidence 3457999999999999999999999999 79999976 7888753
No 157
>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}
Probab=98.30 E-value=4.1e-07 Score=89.17 Aligned_cols=41 Identities=22% Similarity=0.463 Sum_probs=38.5
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEE
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLH 68 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~ 68 (448)
++||+|||||++|++||..|++.|. +|+|+|+++.+||.+.
T Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~g~-~V~lie~~~~~GG~~~ 42 (468)
T 2qae_A 2 PYDVVVIGGGPGGYVASIKAAQLGM-KTACVEKRGALGGTCL 42 (468)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTC-CEEEEESSSSSSHHHH
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCCCcCCcCC
Confidence 5899999999999999999999999 7999999999999764
No 158
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=98.30 E-value=4.2e-07 Score=89.22 Aligned_cols=43 Identities=28% Similarity=0.545 Sum_probs=39.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEE
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLH 68 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~ 68 (448)
..++||+|||||++|++||..|++.|+ +|+|+|+++.+||.+.
T Consensus 4 ~~~~dvvIIGaG~aGl~aA~~l~~~g~-~V~liE~~~~~GG~~~ 46 (470)
T 1dxl_A 4 SDENDVVIIGGGPGGYVAAIKAAQLGF-KTTCIEKRGALGGTCL 46 (470)
T ss_dssp CCCCCEEEECCSHHHHHHHHHHHHHTC-CEEEEECSSSSCCSHH
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCCCcccccc
Confidence 357999999999999999999999999 7999999989998654
No 159
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*
Probab=98.29 E-value=3.3e-07 Score=89.69 Aligned_cols=52 Identities=15% Similarity=0.211 Sum_probs=42.7
Q ss_pred HHHHHHHhhhcccccccCCCceecCceeEEEEecCCcEEEEeCCCc-EEEeCEEEEeec
Q 013178 228 VVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVTVKTEDGS-VYQANYAIVSVS 285 (448)
Q Consensus 228 l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~g~-~~~ad~VI~a~p 285 (448)
+.+.+.+.+.+ .|++|+++++|++|+.+++++.|.+.+|+ ++.+|.||+|+.
T Consensus 209 ~~~~l~~~l~~------~gv~i~~~~~v~~i~~~~~~~~v~~~~G~~~i~~D~vv~a~G 261 (463)
T 2r9z_A 209 LSATLAENMHA------QGIETHLEFAVAALERDAQGTTLVAQDGTRLEGFDSVIWAVG 261 (463)
T ss_dssp HHHHHHHHHHH------TTCEEESSCCEEEEEEETTEEEEEETTCCEEEEESEEEECSC
T ss_pred HHHHHHHHHHH------CCCEEEeCCEEEEEEEeCCeEEEEEeCCcEEEEcCEEEECCC
Confidence 44455555554 59999999999999987777889999998 899999999974
No 160
>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*
Probab=98.28 E-value=2.6e-07 Score=90.93 Aligned_cols=43 Identities=26% Similarity=0.456 Sum_probs=39.1
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEE
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLH 68 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~ 68 (448)
..++||+|||||++|+++|..|++.|. +|+|+|+++.+||.+.
T Consensus 4 ~~~~dVvIIGaG~aGl~aA~~l~~~G~-~V~liE~~~~~GG~~~ 46 (482)
T 1ojt_A 4 DAEYDVVVLGGGPGGYSAAFAAADEGL-KVAIVERYKTLGGVCL 46 (482)
T ss_dssp EEEEEEEEECCSHHHHHHHHHHHHTTC-CEEEEESSSCSSHHHH
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCCCCCCcee
Confidence 446899999999999999999999999 7999999889998654
No 161
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*
Probab=98.28 E-value=3.3e-07 Score=90.35 Aligned_cols=43 Identities=21% Similarity=0.387 Sum_probs=38.3
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEec--------CCCCCceEE
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEA--------SSRVGGRLH 68 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~--------~~~~GGr~~ 68 (448)
.+++||+|||||++||+||..|++.|. +|+|+|+ ...+||.|.
T Consensus 4 ~~~~DvvVIG~G~aGl~aA~~la~~G~-~V~liEk~~~~~~~~~~~~GGtc~ 54 (488)
T 3dgz_A 4 QQSFDLLVIGGGSGGLACAKEAAQLGK-KVAVADYVEPSPRGTKWGLGGTCV 54 (488)
T ss_dssp CCEEEEEEECCSHHHHHHHHHHHHTTC-CEEEECCCCCCTTSCCCCTTCHHH
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCC-eEEEEEecccccccccCCcCCeec
Confidence 467999999999999999999999999 7999998 567888654
No 162
>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*
Probab=98.27 E-value=4.1e-07 Score=89.32 Aligned_cols=43 Identities=26% Similarity=0.564 Sum_probs=39.5
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEE
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLH 68 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~ 68 (448)
+.++||+|||||++|++||..|++.|. +|+|+|+++.+||.+.
T Consensus 4 ~~~~dvvIIGgG~aGl~aA~~l~~~g~-~V~liE~~~~~GG~~~ 46 (474)
T 1zmd_A 4 PIDADVTVIGSGPGGYVAAIKAAQLGF-KTVCIEKNETLGGTCL 46 (474)
T ss_dssp CEEEEEEEECCSHHHHHHHHHHHHTTC-CEEEEECSSSSSHHHH
T ss_pred CCCCCEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCCCcCCccc
Confidence 456899999999999999999999999 7999999999999754
No 163
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*
Probab=98.27 E-value=6.5e-07 Score=87.74 Aligned_cols=42 Identities=26% Similarity=0.453 Sum_probs=38.2
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEE
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLH 68 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~ 68 (448)
..++||+|||||++|++||+.|++.|. +|+|+|++ .+||.+.
T Consensus 2 ~~~~dvvIIGgG~aGl~aA~~l~~~g~-~V~lie~~-~~GG~~~ 43 (467)
T 1zk7_A 2 EPPVQVAVIGSGGAAMAAALKAVEQGA-QVTLIERG-TIGGTCV 43 (467)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESS-STTHHHH
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCC-EEEEEeCC-CCCcccc
Confidence 457899999999999999999999999 89999998 7898654
No 164
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}
Probab=98.27 E-value=3.1e-07 Score=90.33 Aligned_cols=42 Identities=21% Similarity=0.435 Sum_probs=37.7
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEE
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLH 68 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~ 68 (448)
.+++||+|||||++|++||+.|++.|. +|+|+|++ .+||.|.
T Consensus 9 ~~~~dVvVIGgG~aGl~aA~~l~~~g~-~V~liE~~-~~GG~~~ 50 (479)
T 2hqm_A 9 TKHYDYLVIGGGSGGVASARRAASYGA-KTLLVEAK-ALGGTCV 50 (479)
T ss_dssp -CEEEEEEECCSHHHHHHHHHHHHTSC-CEEEEESS-CTTHHHH
T ss_pred cccCCEEEEcCCHHHHHHHHHHHHCCC-cEEEEeCC-CcCCcCc
Confidence 457899999999999999999999999 79999997 7888764
No 165
>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7
Probab=98.27 E-value=6.9e-07 Score=78.72 Aligned_cols=34 Identities=38% Similarity=0.457 Sum_probs=32.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
+++||+|||||++|+++|..|++.|. +|+|+|++
T Consensus 2 ~~~dVvVVGgG~aGl~aA~~la~~g~-~v~lie~~ 35 (232)
T 2cul_A 2 AAYQVLIVGAGFSGAETAFWLAQKGV-RVGLLTQS 35 (232)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESC
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCC-CEEEEecC
Confidence 46899999999999999999999999 79999997
No 166
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*
Probab=98.26 E-value=3e-07 Score=89.63 Aligned_cols=42 Identities=21% Similarity=0.366 Sum_probs=37.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEE
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLH 68 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~ 68 (448)
++++||+|||||++|++||++|++.|. +|+|+|++ .+||.|.
T Consensus 2 ~~~~dvvIIGgG~aGl~aA~~l~~~g~-~V~liE~~-~~GG~~~ 43 (450)
T 1ges_A 2 TKHYDYIAIGGGSGGIASINRAAMYGQ-KCALIEAK-ELGGTCV 43 (450)
T ss_dssp -CEEEEEEECCSHHHHHHHHHHHTTTC-CEEEEESS-CTTHHHH
T ss_pred CccCCEEEECCCHHHHHHHHHHHhCCC-eEEEEcCC-CCCCccc
Confidence 346899999999999999999999999 79999997 7888764
No 167
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*
Probab=98.24 E-value=5.1e-07 Score=88.93 Aligned_cols=53 Identities=9% Similarity=0.187 Sum_probs=42.8
Q ss_pred HHHHHHHHhhhcccccccCCCceecCceeEEEEecCC-cEEEEeCCCcEEEeCEEEEeec
Q 013178 227 SVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKD-KVTVKTEDGSVYQANYAIVSVS 285 (448)
Q Consensus 227 ~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~-~v~V~~~~g~~~~ad~VI~a~p 285 (448)
.+.+.+.+.+.+ .|++|+++++|++|+.+++ .+.|.+.+|+++.+|.||+|+.
T Consensus 232 ~~~~~l~~~l~~------~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G 285 (490)
T 1fec_A 232 ELRKQLTEQLRA------NGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIG 285 (490)
T ss_dssp HHHHHHHHHHHH------TTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred HHHHHHHHHHHh------CCCEEEeCCEEEEEEEcCCCEEEEEECCCcEEEcCEEEEccC
Confidence 345555555554 5999999999999998764 4788888998999999999985
No 168
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...
Probab=98.24 E-value=6.8e-07 Score=90.35 Aligned_cols=40 Identities=30% Similarity=0.455 Sum_probs=36.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCc
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGG 65 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GG 65 (448)
...+||+|||||++|+++|+.|++.|+ +|+|+|+.+..||
T Consensus 44 ~~~~dvvIIG~G~aGl~aA~~l~~~G~-~V~liE~~~~~gg 83 (623)
T 3pl8_A 44 DIKYDVVIVGSGPIGCTYARELVGAGY-KVAMFDIGEIDSG 83 (623)
T ss_dssp --CEEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCCSS
T ss_pred cccCCEEEECCcHHHHHHHHHHHhCCC-cEEEEeccCCCCC
Confidence 356899999999999999999999999 8999999999888
No 169
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*
Probab=98.24 E-value=3.8e-07 Score=89.92 Aligned_cols=53 Identities=17% Similarity=0.294 Sum_probs=42.5
Q ss_pred HHHHHHHHhhhcccccccCCCceecCceeEEEEecCC-cEEEEeCCCcEEEeCEEEEeec
Q 013178 227 SVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKD-KVTVKTEDGSVYQANYAIVSVS 285 (448)
Q Consensus 227 ~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~-~v~V~~~~g~~~~ad~VI~a~p 285 (448)
.+.+.+.+.+.+ .|++|+++++|++|+.+++ .+.|.+.+|+++.+|.||+|+.
T Consensus 236 ~~~~~l~~~l~~------~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G 289 (495)
T 2wpf_A 236 TIREEVTKQLTA------NGIEIMTNENPAKVSLNTDGSKHVTFESGKTLDVDVVMMAIG 289 (495)
T ss_dssp HHHHHHHHHHHH------TTCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred HHHHHHHHHHHh------CCCEEEeCCEEEEEEEcCCceEEEEECCCcEEEcCEEEECCC
Confidence 345555555554 5999999999999998764 4788888998999999999984
No 170
>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*
Probab=98.23 E-value=7.2e-07 Score=87.10 Aligned_cols=54 Identities=19% Similarity=0.259 Sum_probs=44.3
Q ss_pred HHHHHHHHHhhhcccccccCCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeec
Q 013178 226 ESVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVS 285 (448)
Q Consensus 226 ~~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p 285 (448)
..+.+.+.+.+.+ .|++|+++++|++|+.+++++.|.+.+|+++.+|.||+|+.
T Consensus 208 ~~~~~~l~~~l~~------~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vv~A~G 261 (455)
T 2yqu_A 208 LEVSRAAERVFKK------QGLTIRTGVRVTAVVPEAKGARVELEGGEVLEADRVLVAVG 261 (455)
T ss_dssp HHHHHHHHHHHHH------HTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECSC
T ss_pred HHHHHHHHHHHHH------CCCEEEECCEEEEEEEeCCEEEEEECCCeEEEcCEEEECcC
Confidence 3455556666554 58999999999999988888888888888999999999985
No 171
>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}
Probab=98.22 E-value=6.5e-07 Score=83.64 Aligned_cols=42 Identities=31% Similarity=0.565 Sum_probs=37.2
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceE
Q 013178 24 SPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRL 67 (448)
Q Consensus 24 ~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~ 67 (448)
+.+++||+|||||++|+++|+.|++.|+ +|+|+|+. .+||.+
T Consensus 11 ~~~~~~vvIIG~G~aGl~aA~~l~~~g~-~v~lie~~-~~gg~~ 52 (335)
T 2a87_A 11 HHPVRDVIVIGSGPAGYTAALYAARAQL-APLVFEGT-SFGGAL 52 (335)
T ss_dssp CCCCEEEEEECCHHHHHHHHHHHHHTTC-CCEEECCS-SCSCGG
T ss_pred cCCcCCEEEECCCHHHHHHHHHHHhCCC-eEEEEecC-CCCCce
Confidence 4567899999999999999999999999 79999975 677754
No 172
>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}
Probab=98.21 E-value=1.2e-06 Score=83.48 Aligned_cols=35 Identities=26% Similarity=0.476 Sum_probs=32.8
Q ss_pred CcEEEECCChHHHHHHHHHHHc--CCCcEEEEecCCCC
Q 013178 28 NSVIIVGAGMSGFMAAKTLEEA--GYKDFIILEASSRV 63 (448)
Q Consensus 28 ~dViIIGaGiaGL~aA~~L~~~--G~~~V~vlE~~~~~ 63 (448)
+||+|||||++||++|..|++. |+ +|+|+|+++.+
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~~~G~-~V~v~E~~~~~ 37 (381)
T 3c4a_A 1 MKILVIGAGPAGLVFASQLKQARPLW-AIDIVEKNDEQ 37 (381)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTS-EEEEECSSCTT
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCC-CEEEEECCCCC
Confidence 4899999999999999999999 99 89999998766
No 173
>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}
Probab=98.21 E-value=7.2e-07 Score=86.38 Aligned_cols=35 Identities=23% Similarity=0.323 Sum_probs=31.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
+++||+|||||++||++|+.|+++|+ +|+|||++.
T Consensus 21 m~~~ViIVGaGpaGl~~A~~La~~G~-~V~viE~~~ 55 (430)
T 3ihm_A 21 MKKRIGIVGAGTAGLHLGLFLRQHDV-DVTVYTDRK 55 (430)
T ss_dssp --CEEEEECCHHHHHHHHHHHHHTTC-EEEEEESCC
T ss_pred CCCCEEEECCcHHHHHHHHHHHHCCC-eEEEEcCCC
Confidence 45899999999999999999999999 899999975
No 174
>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*
Probab=98.21 E-value=2.4e-07 Score=91.44 Aligned_cols=40 Identities=20% Similarity=0.117 Sum_probs=30.9
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCc
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGG 65 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GG 65 (448)
...+||||||+|++||++|..|.++|. ..+++|+.+..|+
T Consensus 37 ~~i~Dvi~IGaGp~gLa~A~~L~~~~~-~~~~~~~~~~~~~ 76 (501)
T 4b63_A 37 DELHDLLCVGFGPASLAIAIALHDALD-PRLNKSASNIHAQ 76 (501)
T ss_dssp TSCEEEEEECCSHHHHHHHHHHHHHHC-TTTCTTC----CC
T ss_pred CCcCcEEEEcccHHHHHHHHHHHhcCC-CceEEeccccCCC
Confidence 345899999999999999999999987 6777777766655
No 175
>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=98.21 E-value=5.8e-07 Score=87.82 Aligned_cols=42 Identities=24% Similarity=0.508 Sum_probs=38.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEE
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHK 69 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s 69 (448)
.++||+|||||++|++||..|++.|. +|+|+|+ +.+||.|..
T Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~-~V~lie~-~~~GG~~~~ 45 (458)
T 1lvl_A 4 IQTTLLIIGGGPGGYVAAIRAGQLGI-PTVLVEG-QALGGTCLN 45 (458)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHHTC-CEEEECS-SCTTHHHHH
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCC-EEEEEcc-CCCCCcCCC
Confidence 46899999999999999999999999 7999999 789998753
No 176
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}
Probab=98.20 E-value=3.5e-07 Score=90.16 Aligned_cols=40 Identities=20% Similarity=0.360 Sum_probs=36.5
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEE
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLH 68 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~ 68 (448)
++||+|||||++|++||..|++.|. +|+|+|++ .+||.|.
T Consensus 8 ~~DvvVIGgG~aGl~aA~~la~~G~-~V~liE~~-~~GGtc~ 47 (492)
T 3ic9_A 8 NVDVAIIGTGTAGMGAYRAAKKHTD-KVVLIEGG-AYGTTCA 47 (492)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTCS-CEEEEESS-CSSCHHH
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCC-cEEEEeCC-CCCCccc
Confidence 5899999999999999999999999 79999996 5888653
No 177
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Probab=98.20 E-value=1.3e-06 Score=90.21 Aligned_cols=45 Identities=40% Similarity=0.698 Sum_probs=40.5
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEE
Q 013178 24 SPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHK 69 (448)
Q Consensus 24 ~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s 69 (448)
....+||+|||||++||+||+.|++.|+ +|+|+|+++.+||.+..
T Consensus 386 ~~~~~~VvIIGgGpAGl~aA~~L~~~G~-~Vtlie~~~~~GG~~~~ 430 (729)
T 1o94_A 386 TKNKDSVLIVGAGPSGSEAARVLMESGY-TVHLTDTAEKIGGHLNQ 430 (729)
T ss_dssp CSSCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSSTTTTHHH
T ss_pred ccCCceEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCCCcCCeeee
Confidence 3457899999999999999999999999 89999999999997643
No 178
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*
Probab=98.19 E-value=5.2e-07 Score=88.30 Aligned_cols=40 Identities=30% Similarity=0.546 Sum_probs=36.8
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEE
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLH 68 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~ 68 (448)
++||+|||||++|++||..|++.|. +|+|+|+++ +||.|.
T Consensus 6 ~~dvvIIG~G~aG~~aA~~l~~~g~-~V~lie~~~-~GG~~~ 45 (464)
T 2eq6_A 6 TYDLIVIGTGPGGYHAAIRAAQLGL-KVLAVEAGE-VGGVCL 45 (464)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTC-CEEEEESSC-TTHHHH
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCC-eEEEEeCCC-CCCCCC
Confidence 6899999999999999999999999 799999987 888653
No 179
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*
Probab=98.18 E-value=8.4e-07 Score=87.33 Aligned_cols=34 Identities=24% Similarity=0.361 Sum_probs=31.9
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEec
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEA 59 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~ 59 (448)
..++||+|||||++|++||+.|++.|. +|+|+|+
T Consensus 7 ~~~~DvvVIGgG~aGl~aA~~la~~G~-~V~liEk 40 (483)
T 3dgh_A 7 SYDYDLIVIGGGSAGLACAKEAVLNGA-RVACLDF 40 (483)
T ss_dssp CCSEEEEEECCSHHHHHHHHHHHHTTC-CEEEECC
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCC-EEEEEEe
Confidence 467999999999999999999999999 7999995
No 180
>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*
Probab=98.18 E-value=5.7e-07 Score=83.34 Aligned_cols=40 Identities=25% Similarity=0.502 Sum_probs=36.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceE
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRL 67 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~ 67 (448)
+++||+|||||++|+++|+.|++.|+ +|+|+|+. .+||.+
T Consensus 4 ~~~~vvIIG~G~aGl~aA~~l~~~g~-~v~lie~~-~~gg~~ 43 (320)
T 1trb_A 4 KHSKLLILGSGPAGYTAAVYAARANL-QPVLITGM-EKGGQL 43 (320)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHTTTC-CCEEECCS-STTGGG
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCC-cEEEEccC-CCCceE
Confidence 46899999999999999999999999 79999975 788854
No 181
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=98.17 E-value=8.4e-07 Score=87.65 Aligned_cols=53 Identities=17% Similarity=0.239 Sum_probs=42.6
Q ss_pred HHHHHHHHhhhcccccccCCCceecCceeEEEEecCC-cEEEEeCCCcE-EEeCEEEEeec
Q 013178 227 SVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKD-KVTVKTEDGSV-YQANYAIVSVS 285 (448)
Q Consensus 227 ~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~-~v~V~~~~g~~-~~ad~VI~a~p 285 (448)
.+.+.+.+.+.+ .|++|+++++|++|+.+++ .+.|.+.+|++ +.+|.||+|++
T Consensus 218 ~~~~~l~~~l~~------~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~D~vi~a~G 272 (500)
T 1onf_A 218 SVINVLENDMKK------NNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCVG 272 (500)
T ss_dssp HHHHHHHHHHHH------TTCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECCC
T ss_pred hhHHHHHHHHHh------CCCEEEECCEEEEEEEcCCceEEEEECCCcEEEECCEEEECCC
Confidence 455555566655 5999999999999998654 47888889977 99999999986
No 182
>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*
Probab=98.15 E-value=1.8e-05 Score=77.11 Aligned_cols=36 Identities=28% Similarity=0.524 Sum_probs=32.8
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRV 63 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~ 63 (448)
..+|+|||||.+|+.+|..|++.|. +|+|+|+++++
T Consensus 167 ~~~vvIiGgG~~g~e~A~~l~~~g~-~V~lv~~~~~~ 202 (455)
T 2yqu_A 167 PKRLIVVGGGVIGLELGVVWHRLGA-EVIVLEYMDRI 202 (455)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-EEEEEecCCcc
Confidence 4789999999999999999999999 89999997644
No 183
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Probab=98.09 E-value=2.5e-06 Score=87.35 Aligned_cols=42 Identities=26% Similarity=0.502 Sum_probs=38.8
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceE
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRL 67 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~ 67 (448)
..++||+|||||++|++||..|++.|+ +|+|+|+++.+||..
T Consensus 371 ~~~~~vvIIGgG~AGl~aA~~l~~~g~-~V~lie~~~~~gg~~ 412 (671)
T 1ps9_A 371 VQKKNLAVVGAGPAGLAFAINAAARGH-QVTLFDAHSEIGGQF 412 (671)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHTTTC-EEEEEESSSSSCTTH
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCCCCCCee
Confidence 456899999999999999999999999 899999999999864
No 184
>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*
Probab=98.07 E-value=3.5e-06 Score=78.33 Aligned_cols=38 Identities=32% Similarity=0.338 Sum_probs=34.1
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCc
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGG 65 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GG 65 (448)
++||+|||||++|+.||+.|++.|. +|+|+|++...+.
T Consensus 1 m~dViVIGgG~AG~~AA~~la~~G~-~V~liE~~~~~~t 38 (443)
T 3g5s_A 1 MERVNVVGAGLAGSEAAWTLLRLGV-PVRLFEMRPKRMT 38 (443)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTC-CEEEECCTTTSCC
T ss_pred CCCEEEECchHHHHHHHHHHHHCCC-cEEEEeccCCcCC
Confidence 3799999999999999999999999 7999999875544
No 185
>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}
Probab=98.01 E-value=3.7e-06 Score=85.25 Aligned_cols=38 Identities=21% Similarity=0.229 Sum_probs=34.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHHc------CCCcEEEEecCCCCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEA------GYKDFIILEASSRVG 64 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~------G~~~V~vlE~~~~~G 64 (448)
.++||+|||||+|||+||+.|+++ |. +|+|||+....+
T Consensus 21 ~~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~-~V~vleK~~~~~ 64 (662)
T 3gyx_A 21 HSVDLLMVGGGMGNCGAAFEAVRWADKYAPEA-KILLVDKASLER 64 (662)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHHHHHHCTTC-CEEEECSSCTTT
T ss_pred EEcCEEEECCCHHHHHHHHHHHhhccccCCCC-cEEEEEecCCCC
Confidence 368999999999999999999998 99 799999986544
No 186
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}
Probab=97.99 E-value=4.9e-06 Score=80.99 Aligned_cols=39 Identities=28% Similarity=0.507 Sum_probs=34.5
Q ss_pred CCcEEEECCChHHHHHHHHHHHc--CCCcEEEEecCCCCCce
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEA--GYKDFIILEASSRVGGR 66 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~--G~~~V~vlE~~~~~GGr 66 (448)
++||+|||||++||+||+.|++. |. +|+|+|+++.+++.
T Consensus 3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~-~V~vie~~~~~~~~ 43 (449)
T 3kd9_A 3 LKKVVIIGGGAAGMSAASRVKRLKPEW-DVKVFEATEWVSHA 43 (449)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTS-EEEEECSSSCCC--
T ss_pred cCcEEEECCcHHHHHHHHHHHHhCcCC-CEEEEECCCccccC
Confidence 57999999999999999999998 77 89999999988754
No 187
>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}
Probab=97.98 E-value=2.6e-06 Score=84.39 Aligned_cols=54 Identities=11% Similarity=0.115 Sum_probs=46.2
Q ss_pred HHHHHHHHHhhhcccccccCCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeec
Q 013178 226 ESVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVS 285 (448)
Q Consensus 226 ~~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p 285 (448)
..+...+.+.+++ .|+++++++.|++++..++++.|.+.++.++.+|.|++|+.
T Consensus 263 ~ei~~~l~~~l~~------~gi~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~D~vLvAvG 316 (542)
T 4b1b_A 263 QQCAVKVKLYMEE------QGVMFKNGILPKKLTKMDDKILVEFSDKTSELYDTVLYAIG 316 (542)
T ss_dssp HHHHHHHHHHHHH------TTCEEEETCCEEEEEEETTEEEEEETTSCEEEESEEEECSC
T ss_pred hhHHHHHHHHHHh------hcceeecceEEEEEEecCCeEEEEEcCCCeEEEEEEEEccc
Confidence 3456666666665 59999999999999999999999999998999999999983
No 188
>3h28_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A* 3hyv_A* 3hyw_A* 3hyx_A*
Probab=97.97 E-value=3.7e-06 Score=81.38 Aligned_cols=38 Identities=18% Similarity=0.443 Sum_probs=34.6
Q ss_pred CCcEEEECCChHHHHHHHHHHH--cCCCcEEEEecCCCCCc
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEE--AGYKDFIILEASSRVGG 65 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~--~G~~~V~vlE~~~~~GG 65 (448)
++||+|||||++||++|+.|++ .|. +|+|+|+++.+++
T Consensus 2 ~~~vvIIGgG~aGl~aA~~L~~~~~g~-~Vtlie~~~~~~~ 41 (430)
T 3h28_A 2 AKHVVVIGGGVGGIATAYNLRNLMPDL-KITLISDRPYFGF 41 (430)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHCTTC-EEEEECSSSEEEC
T ss_pred CCCEEEECccHHHHHHHHHHHcCCCCC-eEEEECCCCCCCc
Confidence 4799999999999999999999 788 8999999987765
No 189
>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*
Probab=97.97 E-value=4.6e-06 Score=81.13 Aligned_cols=42 Identities=31% Similarity=0.352 Sum_probs=38.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHH-c------CCCcEEEEecCCCCCceEE
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEE-A------GYKDFIILEASSRVGGRLH 68 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~-~------G~~~V~vlE~~~~~GGr~~ 68 (448)
+++||+|||||++|++||..|++ . |. +|+|||+.+.+||.+.
T Consensus 2 ~~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~-~V~lie~~~~~gg~~~ 50 (456)
T 1lqt_A 2 RPYYIAIVGSGPSAFFAAASLLKAADTTEDLDM-AVDMLEMLPTPWGLVR 50 (456)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHHHHHSTTCCE-EEEEEESSSSCSTHHH
T ss_pred CCCEEEEECcCHHHHHHHHHHHhhCccccCCCC-eEEEEecCCCCCCccc
Confidence 35799999999999999999999 7 89 8999999988998763
No 190
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*
Probab=97.97 E-value=6.7e-05 Score=73.25 Aligned_cols=41 Identities=20% Similarity=0.255 Sum_probs=35.2
Q ss_pred CCCceecCceeEEEEecCCcEEEEeC-C--Cc--EEEeCEEEEeec
Q 013178 245 RDPRLKLNKVVRNISYSKDKVTVKTE-D--GS--VYQANYAIVSVS 285 (448)
Q Consensus 245 ~g~~i~~~~~V~~I~~~~~~v~V~~~-~--g~--~~~ad~VI~a~p 285 (448)
.|++|+++++|++|+.+++++.|.+. + |+ ++.+|.||+|+.
T Consensus 223 ~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vv~a~G 268 (464)
T 2eq6_A 223 EGIRVRTKTKAVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVG 268 (464)
T ss_dssp TTCEEECSEEEEEEEEETTEEEEEEEETTCCSCEEEEESEEEECSC
T ss_pred cCCEEEcCCEEEEEEEeCCEEEEEEeecCCCceeEEEcCEEEECCC
Confidence 48999999999999988777777765 6 76 899999999984
No 191
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*
Probab=97.96 E-value=7.3e-06 Score=80.71 Aligned_cols=39 Identities=18% Similarity=0.324 Sum_probs=35.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcC---CCcEEEEecCCCCCc
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAG---YKDFIILEASSRVGG 65 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G---~~~V~vlE~~~~~GG 65 (448)
+++||+|||||++|++||..|++.| . +|+|+|+++.+|.
T Consensus 34 m~~dvvIIGaG~aGl~aA~~l~~~g~~~~-~V~lie~~~~~~~ 75 (490)
T 2bc0_A 34 WGSKIVVVGANHAGTACIKTMLTNYGDAN-EIVVFDQNSNISF 75 (490)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHHGGGS-EEEEECSSSCCSB
T ss_pred cCCcEEEECCCHHHHHHHHHHHhcCCCCC-eEEEEECCCCCCc
Confidence 4589999999999999999999998 8 8999999887653
No 192
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*
Probab=97.95 E-value=3.2e-06 Score=89.88 Aligned_cols=41 Identities=32% Similarity=0.621 Sum_probs=39.0
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEE
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLH 68 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~ 68 (448)
++||+|||||++||+||..|++.|+ +|+|+|+++++||++.
T Consensus 128 ~~dVvVIGaGpAGl~AA~~la~~G~-~V~lie~~~~~GG~~~ 168 (965)
T 2gag_A 128 HTDVLVVGAGPAGLAAAREASRSGA-RVMLLDERAEAGGTLL 168 (965)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSSSSGGGG
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCC-cEEEEeCCCCCCceec
Confidence 5799999999999999999999999 7999999999999877
No 193
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Probab=97.95 E-value=7.4e-06 Score=78.62 Aligned_cols=40 Identities=20% Similarity=0.403 Sum_probs=34.9
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCC-cEEEEecCCCCC
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYK-DFIILEASSRVG 64 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~-~V~vlE~~~~~G 64 (448)
.+++||+|||||++|++||..|++.|.+ +|+|+|+++.++
T Consensus 5 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~~ 45 (408)
T 2gqw_A 5 ALKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERP 45 (408)
T ss_dssp -CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCC
T ss_pred CCCCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCCc
Confidence 4578999999999999999999999983 499999987654
No 194
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*
Probab=97.95 E-value=8.1e-05 Score=72.34 Aligned_cols=41 Identities=22% Similarity=0.393 Sum_probs=36.0
Q ss_pred CCCceecCceeEEEEecCCc-EEEEeCCCcEEEeCEEEEeec
Q 013178 245 RDPRLKLNKVVRNISYSKDK-VTVKTEDGSVYQANYAIVSVS 285 (448)
Q Consensus 245 ~g~~i~~~~~V~~I~~~~~~-v~V~~~~g~~~~ad~VI~a~p 285 (448)
.|++++++++|++|+.++++ +.|.+.+|+++.+|.||+|+.
T Consensus 221 ~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vv~a~G 262 (450)
T 1ges_A 221 EGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIG 262 (450)
T ss_dssp HSCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred CCCEEEeCCEEEEEEEeCCcEEEEEECCCcEEEcCEEEECCC
Confidence 38999999999999987654 788888998999999999985
No 195
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*
Probab=97.94 E-value=9.3e-05 Score=72.20 Aligned_cols=36 Identities=28% Similarity=0.453 Sum_probs=32.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRV 63 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~ 63 (448)
..+|+|||||.+|+-+|..|++.|. +|+|+|+++++
T Consensus 166 ~~~vvVvGgG~~g~e~A~~l~~~G~-~Vtlv~~~~~~ 201 (463)
T 2r9z_A 166 PKRVAIIGAGYIGIELAGLLRSFGS-EVTVVALEDRL 201 (463)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCC-EEEEEEcCCcc
Confidence 4689999999999999999999999 89999987644
No 196
>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*
Probab=97.94 E-value=6e-06 Score=80.44 Aligned_cols=41 Identities=24% Similarity=0.301 Sum_probs=37.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcC--CCcEEEEecCCCCCceE
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAG--YKDFIILEASSRVGGRL 67 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G--~~~V~vlE~~~~~GGr~ 67 (448)
.++||+|||||++|+++|..|++.| . +|+|||+.+.+||++
T Consensus 5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~-~V~vie~~~~~gg~~ 47 (460)
T 1cjc_A 5 QTPQICVVGSGPAGFYTAQHLLKHHSRA-HVDIYEKQLVPFGLV 47 (460)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHHCSSC-EEEEECSSSSSCTHH
T ss_pred CCceEEEECcCHHHHHHHHHHHhcCCCC-CEEEEeCCCcCCcee
Confidence 4689999999999999999999998 8 899999999998865
No 197
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*
Probab=97.93 E-value=4.4e-06 Score=80.32 Aligned_cols=37 Identities=22% Similarity=0.254 Sum_probs=33.5
Q ss_pred CcEEEECCChHHHHHHHHHHH---cCCCcEEEEecCCCCCc
Q 013178 28 NSVIIVGAGMSGFMAAKTLEE---AGYKDFIILEASSRVGG 65 (448)
Q Consensus 28 ~dViIIGaGiaGL~aA~~L~~---~G~~~V~vlE~~~~~GG 65 (448)
+||+|||||++||++|+.|++ .|. +|+|+|+++.+++
T Consensus 2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~-~V~vie~~~~~~~ 41 (409)
T 3h8l_A 2 TKVLVLGGRFGALTAAYTLKRLVGSKA-DVKVINKSRFSYF 41 (409)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHGGGS-EEEEEESSSEEEE
T ss_pred CeEEEECCCHHHHHHHHHHHhhCCCCC-eEEEEeCCCCcee
Confidence 589999999999999999999 899 8999999985543
No 198
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=97.92 E-value=6.3e-06 Score=88.26 Aligned_cols=42 Identities=33% Similarity=0.507 Sum_probs=38.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceE
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRL 67 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~ 67 (448)
..+||+|||||++||+||+.|++.|+++|+|+|+.+.+||..
T Consensus 186 ~~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~GG~~ 227 (1025)
T 1gte_A 186 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLS 227 (1025)
T ss_dssp GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHH
T ss_pred CCCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCCCccc
Confidence 468999999999999999999999982399999999999964
No 199
>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Probab=97.89 E-value=8.1e-06 Score=82.53 Aligned_cols=34 Identities=24% Similarity=0.411 Sum_probs=32.2
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEec
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEA 59 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~ 59 (448)
..++||+|||||++||+||..|++.|+ +|+|+|+
T Consensus 105 ~~~~dvvVIG~GpAGl~aA~~l~~~g~-~v~liE~ 138 (598)
T 2x8g_A 105 KYDYDLIVIGGGSGGLAAGKEAAKYGA-KTAVLDY 138 (598)
T ss_dssp SSSEEEEEECCSHHHHHHHHHHHHTTC-CEEEECC
T ss_pred cccccEEEECCCccHHHHHHHHHhCCC-eEEEEec
Confidence 567999999999999999999999999 7999997
No 200
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Probab=97.87 E-value=8.9e-06 Score=80.08 Aligned_cols=54 Identities=15% Similarity=0.271 Sum_probs=44.1
Q ss_pred HHHHHHHHhhhcccccccCCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeech
Q 013178 227 SVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSI 286 (448)
Q Consensus 227 ~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~ 286 (448)
.+...+.+.+.+ .|++|+++++|++|+.+++++.|.+.+|+++.||.||+|+..
T Consensus 227 ~~~~~~~~~l~~------~GV~v~~~~~V~~i~~~~~~~~v~l~dG~~i~aD~Vv~a~G~ 280 (493)
T 1m6i_A 227 YLSNWTMEKVRR------EGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGL 280 (493)
T ss_dssp HHHHHHHHHHHT------TTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCCE
T ss_pred HHHHHHHHHHHh------cCCEEEeCCEEEEEEecCCeEEEEECCCCEEECCEEEECCCC
Confidence 344555555554 599999999999999877778888999999999999999863
No 201
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=97.86 E-value=0.0001 Score=71.84 Aligned_cols=36 Identities=22% Similarity=0.439 Sum_probs=32.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSR 62 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~ 62 (448)
...+|+|||||.+|+-+|..|++.|. +|+|+|+.++
T Consensus 169 ~~~~vvViGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~ 204 (455)
T 1ebd_A 169 VPKSLVVIGGGYIGIELGTAYANFGT-KVTILEGAGE 204 (455)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSS
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC-cEEEEEcCCc
Confidence 35789999999999999999999999 8999998753
No 202
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}
Probab=97.85 E-value=1.2e-05 Score=78.32 Aligned_cols=53 Identities=23% Similarity=0.325 Sum_probs=40.7
Q ss_pred HHHHHHHHhhhcccccccCCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeec
Q 013178 227 SVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVS 285 (448)
Q Consensus 227 ~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p 285 (448)
.+.+.+.+.+++ .|++|+++++|++|+.+++++.....+|+++.+|.||+|++
T Consensus 192 ~~~~~l~~~l~~------~Gv~i~~~~~v~~i~~~~~~v~~v~~~g~~i~~D~vv~a~G 244 (452)
T 2cdu_A 192 EFTDILAKDYEA------HGVNLVLGSKVAAFEEVDDEIITKTLDGKEIKSDIAILCIG 244 (452)
T ss_dssp HHHHHHHHHHHH------TTCEEEESSCEEEEEEETTEEEEEETTSCEEEESEEEECCC
T ss_pred hHHHHHHHHHHH------CCCEEEcCCeeEEEEcCCCeEEEEEeCCCEEECCEEEECcC
Confidence 455556666555 59999999999999976667753334778999999999985
No 203
>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*
Probab=97.84 E-value=1.1e-05 Score=80.66 Aligned_cols=37 Identities=41% Similarity=0.602 Sum_probs=33.7
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCC
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSR 62 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~ 62 (448)
...+|+||||||.+|+++|.+|+++|. +|+|||+...
T Consensus 5 ~~~~D~iIvG~G~aG~~~A~~L~~~g~-~VlvlE~g~~ 41 (546)
T 1kdg_A 5 ATPYDYIIVGAGPGGIIAADRLSEAGK-KVLLLERGGP 41 (546)
T ss_dssp -CCEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSCC
T ss_pred CCceeEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCCC
Confidence 467999999999999999999999999 7999999764
No 204
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Probab=97.82 E-value=1.2e-05 Score=77.94 Aligned_cols=36 Identities=33% Similarity=0.550 Sum_probs=33.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHH---cCCCcEEEEecCCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEE---AGYKDFIILEASSR 62 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~---~G~~~V~vlE~~~~ 62 (448)
.++||+|||||++|++||+.|++ .|. +|+|+|+++.
T Consensus 3 ~m~~vvIIGgG~aGl~aA~~L~~~~~~g~-~Vtlie~~~~ 41 (437)
T 3sx6_A 3 GSAHVVILGAGTGGMPAAYEMKEALGSGH-EVTLISANDY 41 (437)
T ss_dssp TSCEEEEECCSTTHHHHHHHHHHHHGGGS-EEEEECSSSE
T ss_pred CCCcEEEECCcHHHHHHHHHHhccCCCcC-EEEEEeCCCC
Confidence 35799999999999999999999 899 8999999874
No 205
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*
Probab=97.82 E-value=0.00014 Score=70.71 Aligned_cols=36 Identities=28% Similarity=0.569 Sum_probs=33.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSR 62 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~ 62 (448)
...+|+|||||.+|+.+|..|++.|. +|+|+|++++
T Consensus 148 ~~~~vvIiG~G~~g~e~A~~l~~~g~-~Vtlv~~~~~ 183 (447)
T 1nhp_A 148 EVNNVVVIGSGYIGIEAAEAFAKAGK-KVTVIDILDR 183 (447)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSS
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC-eEEEEecCcc
Confidence 46899999999999999999999999 8999998753
No 206
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}
Probab=97.82 E-value=8.2e-06 Score=81.18 Aligned_cols=36 Identities=31% Similarity=0.582 Sum_probs=31.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHHH-cCCCcEEEEecCC
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEE-AGYKDFIILEASS 61 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~-~G~~~V~vlE~~~ 61 (448)
.+.||+||||||.+|+.+|.+|++ .|+ +|+|||+..
T Consensus 15 ~~~yD~IIVGsG~aG~v~A~rLse~~~~-~VLvLEaG~ 51 (526)
T 3t37_A 15 APNCDIVIVGGGSAGSLLAARLSEDPDS-RVLLIEAGE 51 (526)
T ss_dssp --CEEEEEECCSHHHHHHHHHHTTSTTS-CEEEECSSB
T ss_pred CCCeeEEEECccHHHHHHHHHHHhCCCC-eEEEEcCCC
Confidence 458999999999999999999998 678 799999964
No 207
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*
Probab=97.81 E-value=1.5e-05 Score=77.53 Aligned_cols=36 Identities=19% Similarity=0.315 Sum_probs=33.5
Q ss_pred CcEEEECCChHHHHHHHHHHHc--CCCcEEEEecCCCCC
Q 013178 28 NSVIIVGAGMSGFMAAKTLEEA--GYKDFIILEASSRVG 64 (448)
Q Consensus 28 ~dViIIGaGiaGL~aA~~L~~~--G~~~V~vlE~~~~~G 64 (448)
+||+|||||++|++||..|++. |. +|+|+|+++.+|
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~~~g~-~V~lie~~~~~~ 38 (447)
T 1nhp_A 1 MKVIVLGSSHGGYEAVEELLNLHPDA-EIQWYEKGDFIS 38 (447)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTS-EEEEEESSSSSS
T ss_pred CeEEEECCCHHHHHHHHHHHHhCcCC-eEEEEECCCccC
Confidence 4899999999999999999998 88 899999998776
No 208
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Probab=97.81 E-value=1.5e-05 Score=78.17 Aligned_cols=38 Identities=21% Similarity=0.287 Sum_probs=33.9
Q ss_pred CCcEEEECCChHHHHHHHHHHHc--CCCcEEEEecCCCCCc
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEA--GYKDFIILEASSRVGG 65 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~--G~~~V~vlE~~~~~GG 65 (448)
++||+|||||++|++||..|++. |. +|+|+|+++..++
T Consensus 36 ~~dvvIIG~G~aGl~aA~~l~~~~~g~-~V~lie~~~~~~~ 75 (480)
T 3cgb_A 36 SMNYVIIGGDAAGMSAAMQIVRNDENA-NVVTLEKGEIYSY 75 (480)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHHCTTC-EEEEECSSSCCSB
T ss_pred cceEEEECCCHHHHHHHHHHHhhCcCC-cEEEEECCCCCCC
Confidence 47999999999999999999997 88 8999999887753
No 209
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}
Probab=97.80 E-value=0.00019 Score=70.37 Aligned_cols=41 Identities=7% Similarity=0.150 Sum_probs=35.2
Q ss_pred CCCceecCceeEEEEecCCc--EEEEeCCC-cEEEeCEEEEeec
Q 013178 245 RDPRLKLNKVVRNISYSKDK--VTVKTEDG-SVYQANYAIVSVS 285 (448)
Q Consensus 245 ~g~~i~~~~~V~~I~~~~~~--v~V~~~~g-~~~~ad~VI~a~p 285 (448)
.|++|+++++|++|+.++++ +.|.+.+| +++.+|.||+|+.
T Consensus 239 ~Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G 282 (479)
T 2hqm_A 239 EGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIG 282 (479)
T ss_dssp HTCEEECSCCEEEEEECC-CCCEEEEETTSCEEEEESEEEECSC
T ss_pred CCeEEEeCCEEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECCC
Confidence 38999999999999986554 78888888 7899999999985
No 210
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Probab=97.77 E-value=0.00025 Score=67.91 Aligned_cols=35 Identities=31% Similarity=0.563 Sum_probs=32.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
...+|+|||||.+|+-+|..|++.|. +|+|+|+.+
T Consensus 144 ~~~~vvViGgG~~g~E~A~~l~~~g~-~Vtlv~~~~ 178 (408)
T 2gqw_A 144 PQSRLLIVGGGVIGLELAATARTAGV-HVSLVETQP 178 (408)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSS
T ss_pred cCCeEEEECCCHHHHHHHHHHHhCCC-EEEEEEeCC
Confidence 35789999999999999999999999 899999875
No 211
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}
Probab=97.76 E-value=0.00024 Score=69.04 Aligned_cols=36 Identities=22% Similarity=0.520 Sum_probs=32.6
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRV 63 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~ 63 (448)
..+|+|||||.+|+-+|..|++.|. +|+|+|+.+++
T Consensus 149 ~~~vvViGgG~~g~E~A~~l~~~g~-~Vtlv~~~~~~ 184 (452)
T 2cdu_A 149 AKTITIIGSGYIGAELAEAYSNQNY-NVNLIDGHERV 184 (452)
T ss_dssp CSEEEEECCSHHHHHHHHHHHTTTC-EEEEEESSSST
T ss_pred CCeEEEECcCHHHHHHHHHHHhcCC-EEEEEEcCCch
Confidence 5689999999999999999999999 89999987644
No 212
>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*
Probab=97.76 E-value=2.2e-05 Score=75.95 Aligned_cols=37 Identities=24% Similarity=0.420 Sum_probs=32.9
Q ss_pred CcEEEECCChHHHHHHHHHHHcCCC-cEEEEecCCCCC
Q 013178 28 NSVIIVGAGMSGFMAAKTLEEAGYK-DFIILEASSRVG 64 (448)
Q Consensus 28 ~dViIIGaGiaGL~aA~~L~~~G~~-~V~vlE~~~~~G 64 (448)
++|+|||||++|++||..|++.|.+ +|+|+|+++..+
T Consensus 1 PKVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~~ 38 (437)
T 4eqs_A 1 PKIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS 38 (437)
T ss_dssp CCEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCSS
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCC
Confidence 4799999999999999999999864 799999987654
No 213
>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*
Probab=97.76 E-value=0.00014 Score=71.40 Aligned_cols=41 Identities=17% Similarity=0.143 Sum_probs=35.2
Q ss_pred CCCceecCceeEEEEecCCcEEEEeCC----CcEEEeCEEEEeec
Q 013178 245 RDPRLKLNKVVRNISYSKDKVTVKTED----GSVYQANYAIVSVS 285 (448)
Q Consensus 245 ~g~~i~~~~~V~~I~~~~~~v~V~~~~----g~~~~ad~VI~a~p 285 (448)
.|++|+++++|++|+.+++++.|.+.+ |+++.+|.||+|+.
T Consensus 239 ~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~~D~vv~a~G 283 (482)
T 1ojt_A 239 RFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAG 283 (482)
T ss_dssp GEEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCC
T ss_pred cCCEEEECCEEEEEEEcCCeEEEEEeccCCCceEEEcCEEEECcC
Confidence 488999999999999887777777766 77899999999985
No 214
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*
Probab=97.75 E-value=0.00018 Score=70.58 Aligned_cols=36 Identities=17% Similarity=0.424 Sum_probs=32.6
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRV 63 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~ 63 (448)
..+|+|||||.+|+-+|..|++.|. +|+|+|+++++
T Consensus 183 ~~~vvViGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~~ 218 (478)
T 1v59_A 183 PKRLTIIGGGIIGLEMGSVYSRLGS-KVTVVEFQPQI 218 (478)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSSS
T ss_pred CceEEEECCCHHHHHHHHHHHHcCC-EEEEEEeCCcc
Confidence 5789999999999999999999999 89999987543
No 215
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*
Probab=97.74 E-value=0.0002 Score=70.96 Aligned_cols=41 Identities=12% Similarity=0.231 Sum_probs=35.8
Q ss_pred CCCceecCceeEEEEecCCc----EEEEeCCCc-EEEeCEEEEeec
Q 013178 245 RDPRLKLNKVVRNISYSKDK----VTVKTEDGS-VYQANYAIVSVS 285 (448)
Q Consensus 245 ~g~~i~~~~~V~~I~~~~~~----v~V~~~~g~-~~~ad~VI~a~p 285 (448)
.|++|+++++|++|+.++++ +.|.+.+|+ ++.+|.||+|+.
T Consensus 268 ~GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G 313 (523)
T 1mo9_A 268 QGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLG 313 (523)
T ss_dssp TTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCC
T ss_pred CCcEEEECCEEEEEEEcCCCceEEEEEEECCCcEEEEcCEEEECcC
Confidence 48999999999999986555 778888887 899999999985
No 216
>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*
Probab=97.74 E-value=7.6e-06 Score=81.33 Aligned_cols=37 Identities=41% Similarity=0.516 Sum_probs=33.5
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCC
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRV 63 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~ 63 (448)
...||+||||||.+|+.+|.+|++ |. +|+|||+....
T Consensus 24 ~~~yD~IIVGsG~AG~v~A~rLse-g~-~VlvLEaG~~~ 60 (536)
T 1ju2_A 24 EGSYDYVIVGGGTSGCPLAATLSE-KY-KVLVLERGSLP 60 (536)
T ss_dssp EEEEEEEEECCSTTHHHHHHHHTT-TS-CEEEECSSBCG
T ss_pred cCcccEEEECccHHHHHHHHHHhc-CC-cEEEEecCCCc
Confidence 456999999999999999999999 99 79999997654
No 217
>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*
Probab=97.73 E-value=0.00028 Score=69.09 Aligned_cols=35 Identities=20% Similarity=0.399 Sum_probs=32.1
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSR 62 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~ 62 (448)
..+|+|||||.+|+-+|..|++.|. +|+|+|+.++
T Consensus 178 ~~~vvViGgG~~g~E~A~~l~~~g~-~Vtlv~~~~~ 212 (474)
T 1zmd_A 178 PEKMVVIGAGVIGVELGSVWQRLGA-DVTAVEFLGH 212 (474)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSS
T ss_pred CceEEEECCCHHHHHHHHHHHHcCC-EEEEEeccCc
Confidence 4789999999999999999999999 8999998753
No 218
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=97.73 E-value=0.00026 Score=69.69 Aligned_cols=36 Identities=25% Similarity=0.405 Sum_probs=32.9
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRV 63 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~ 63 (448)
..+|+|||||.+|+-+|..|++.|. +|+|+|+.+++
T Consensus 176 ~~~vvViGgG~ig~E~A~~l~~~g~-~Vtlv~~~~~~ 211 (500)
T 1onf_A 176 SKKIGIVGSGYIAVELINVIKRLGI-DSYIFARGNRI 211 (500)
T ss_dssp CSEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSSSS
T ss_pred CCeEEEECChHHHHHHHHHHHHcCC-eEEEEecCCcc
Confidence 5689999999999999999999999 89999997654
No 219
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*
Probab=97.73 E-value=0.00027 Score=69.36 Aligned_cols=36 Identities=14% Similarity=0.158 Sum_probs=32.8
Q ss_pred CCcEEEECCChHHHHHHHHHHHc---CCCcEEEEecCCCC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEA---GYKDFIILEASSRV 63 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~---G~~~V~vlE~~~~~ 63 (448)
..+++|||||..|+-+|..|++. |. +|+|+|+.+++
T Consensus 187 ~~~vvViGgG~ig~E~A~~l~~~~~~g~-~Vtlv~~~~~~ 225 (490)
T 1fec_A 187 PKRALCVGGGYISIEFAGIFNAYKARGG-QVDLAYRGDMI 225 (490)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHSCTTC-EEEEEESSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhhccCcC-eEEEEEcCCCc
Confidence 56899999999999999999999 99 89999998644
No 220
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*
Probab=97.72 E-value=0.00034 Score=68.75 Aligned_cols=36 Identities=17% Similarity=0.223 Sum_probs=32.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHc---CCCcEEEEecCCCC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEA---GYKDFIILEASSRV 63 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~---G~~~V~vlE~~~~~ 63 (448)
..+|+|||||..|+-+|..|++. |. +|+|+|+.+++
T Consensus 191 ~~~vvViGgG~ig~E~A~~l~~~~~~g~-~Vtlv~~~~~~ 229 (495)
T 2wpf_A 191 PRRVLTVGGGFISVEFAGIFNAYKPPGG-KVTLCYRNNLI 229 (495)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHCCTTC-EEEEEESSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhhCCCCC-eEEEEEcCCcc
Confidence 46899999999999999999999 99 89999987644
No 221
>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=97.71 E-value=0.00015 Score=70.55 Aligned_cols=35 Identities=23% Similarity=0.458 Sum_probs=32.1
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSR 62 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~ 62 (448)
..+|+|||||.+|+-+|..|++.|. +|+|+|++++
T Consensus 171 ~~~vvViGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~ 205 (458)
T 1lvl_A 171 PQHLVVVGGGYIGLELGIAYRKLGA-QVSVVEARER 205 (458)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSSSS
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCC-eEEEEEcCCc
Confidence 5689999999999999999999999 8999998753
No 222
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*
Probab=97.68 E-value=0.00035 Score=68.13 Aligned_cols=34 Identities=35% Similarity=0.481 Sum_probs=31.6
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
..+|+|||||.+|+-+|..|++.|. +|+|+|+.+
T Consensus 171 ~~~vvViGgG~~g~E~A~~l~~~g~-~Vtlv~~~~ 204 (464)
T 2a8x_A 171 PKSIIIAGAGAIGMEFGYVLKNYGV-DVTIVEFLP 204 (464)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCC-eEEEEEcCC
Confidence 5789999999999999999999999 899999864
No 223
>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*
Probab=97.67 E-value=2.5e-05 Score=74.73 Aligned_cols=41 Identities=12% Similarity=0.047 Sum_probs=38.0
Q ss_pred CCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeec
Q 013178 245 RDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVS 285 (448)
Q Consensus 245 ~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p 285 (448)
.|+++++++.|+.++.+++...|.+.+|+++.+|.||+++|
T Consensus 215 ~gi~v~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vi~~~g 255 (401)
T 3vrd_B 215 ALIEWHPGPDAAVVKTDTEAMTVETSFGETFKAAVINLIPP 255 (401)
T ss_dssp CSEEEECTTTTCEEEEETTTTEEEETTSCEEECSEEEECCC
T ss_pred cCcEEEeCceEEEEEecccceEEEcCCCcEEEeeEEEEecC
Confidence 58999999999999998888899999999999999999876
No 224
>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}
Probab=97.67 E-value=0.00045 Score=68.35 Aligned_cols=35 Identities=23% Similarity=0.371 Sum_probs=31.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
.+.+++|||||..|+=.|..+++.|. +|+|++++.
T Consensus 222 lP~~lvIIGgG~IGlE~A~~~~~lG~-~VTii~~~~ 256 (542)
T 4b1b_A 222 DPGKTLVVGASYVALECSGFLNSLGY-DVTVAVRSI 256 (542)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHHTC-CEEEEESSC
T ss_pred CCceEEEECCCHHHHHHHHHHHhcCC-eEEEecccc
Confidence 35789999999999999999999999 799998753
No 225
>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}
Probab=97.66 E-value=0.00041 Score=67.74 Aligned_cols=41 Identities=20% Similarity=0.257 Sum_probs=33.5
Q ss_pred CCCceecCceeEEEEecCCcEEEEeC--CC--cEEEeCEEEEeec
Q 013178 245 RDPRLKLNKVVRNISYSKDKVTVKTE--DG--SVYQANYAIVSVS 285 (448)
Q Consensus 245 ~g~~i~~~~~V~~I~~~~~~v~V~~~--~g--~~~~ad~VI~a~p 285 (448)
.|++|+++++|++|+.+++++.|.+. +| +++.+|.||+|+.
T Consensus 229 ~gv~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vv~a~G 273 (468)
T 2qae_A 229 EKMKFMTSTKVVGGTNNGDSVSLEVEGKNGKRETVTCEALLVSVG 273 (468)
T ss_dssp TCCEEECSCEEEEEEECSSSEEEEEECC---EEEEEESEEEECSC
T ss_pred CCcEEEeCCEEEEEEEcCCeEEEEEEcCCCceEEEECCEEEECCC
Confidence 48999999999999988777777765 66 6799999999985
No 226
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*
Probab=97.66 E-value=3e-05 Score=76.47 Aligned_cols=39 Identities=23% Similarity=0.337 Sum_probs=34.8
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCC
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVG 64 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~G 64 (448)
...+|++|||||.+|+++|++|++.|. +|+|||+....+
T Consensus 3 ~~~~d~~iiG~G~~g~~~a~~l~~~~~-~v~~~e~~~~~~ 41 (504)
T 1n4w_A 3 GGYVPAVVIGTGYGAAVSALRLGEAGV-QTLMLEMGQLWN 41 (504)
T ss_dssp -CEEEEEEECCSHHHHHHHHHHHHTTC-CEEEEESSCCCC
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCC-cEEEEeCCCCCC
Confidence 356899999999999999999999999 799999987654
No 227
>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*
Probab=97.64 E-value=1.9e-05 Score=78.81 Aligned_cols=37 Identities=30% Similarity=0.527 Sum_probs=33.0
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHc-CCCcEEEEecCC
Q 013178 24 SPPSNSVIIVGAGMSGFMAAKTLEEA-GYKDFIILEASS 61 (448)
Q Consensus 24 ~~~~~dViIIGaGiaGL~aA~~L~~~-G~~~V~vlE~~~ 61 (448)
....||+||||||.||+++|.+|++. +. +|+||||..
T Consensus 16 ~~~~yDyIIVGgG~AG~vlA~RLse~~~~-~VLlLEaG~ 53 (583)
T 3qvp_A 16 SGRTVDYIIAGGGLTGLTTAARLTENPNI-SVLVIESGS 53 (583)
T ss_dssp TTCEEEEEEECCSHHHHHHHHHHTTSTTC-CEEEECSSC
T ss_pred CCCCccEEEECCcHHHHHHHHHHHhCCCC-cEEEEecCC
Confidence 34679999999999999999999974 78 799999975
No 228
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}
Probab=97.63 E-value=0.00048 Score=67.68 Aligned_cols=36 Identities=22% Similarity=0.348 Sum_probs=32.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSR 62 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~ 62 (448)
...+|+|||||.+|+-+|..|++.|. +|+|+|++++
T Consensus 173 ~~k~vvViGgG~ig~E~A~~l~~~g~-~Vtlv~~~~~ 208 (492)
T 3ic9_A 173 LPKSVAVFGPGVIGLELGQALSRLGV-IVKVFGRSGS 208 (492)
T ss_dssp CCSEEEEESSCHHHHHHHHHHHHTTC-EEEEECCTTC
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCC-eEEEEEECCc
Confidence 35789999999999999999999999 8999998753
No 229
>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}
Probab=97.63 E-value=2.6e-05 Score=77.79 Aligned_cols=37 Identities=30% Similarity=0.378 Sum_probs=33.3
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcC-CCcEEEEecCCC
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAG-YKDFIILEASSR 62 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G-~~~V~vlE~~~~ 62 (448)
.+.||+||||||.||+++|.+|++.| . +|+||||...
T Consensus 4 ~~~yDyIVVGgG~AG~v~A~rLse~~~~-~VLllEaG~~ 41 (577)
T 3q9t_A 4 GSHFDFVIVGGGTAGNTVAGRLAENPNV-TVLIVEAGIG 41 (577)
T ss_dssp TCEEEEEEESCSHHHHHHHHHHTTSTTS-CEEEECSSCS
T ss_pred CCcccEEEECCcHHHHHHHHHHHhCCCC-cEEEEecCCC
Confidence 45799999999999999999999987 6 7999999754
No 230
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=97.62 E-value=0.00031 Score=68.60 Aligned_cols=36 Identities=19% Similarity=0.416 Sum_probs=32.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSR 62 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~ 62 (448)
...+|+|||||.+|+-+|..|++.|. +|+|+|++++
T Consensus 176 ~~~~vvViGgG~~g~e~A~~l~~~g~-~Vtli~~~~~ 211 (470)
T 1dxl_A 176 IPKKLVVIGAGYIGLEMGSVWGRIGS-EVTVVEFASE 211 (470)
T ss_dssp CCSEEEESCCSHHHHHHHHHHHHHTC-EEEEECSSSS
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCC-cEEEEEcCCc
Confidence 35789999999999999999999999 8999998753
No 231
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*
Probab=97.60 E-value=0.00051 Score=67.05 Aligned_cols=40 Identities=8% Similarity=0.101 Sum_probs=34.3
Q ss_pred CCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeec
Q 013178 245 RDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVS 285 (448)
Q Consensus 245 ~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p 285 (448)
.|++|+++++|++|+.+++.+.|.+++ .++.+|.||+|+.
T Consensus 229 ~Gv~i~~~~~v~~i~~~~~~~~v~~~~-~~i~aD~Vv~a~G 268 (467)
T 1zk7_A 229 EGIEVLEHTQASQVAHMDGEFVLTTTH-GELRADKLLVATG 268 (467)
T ss_dssp TTCEEETTCCEEEEEEETTEEEEEETT-EEEEESEEEECSC
T ss_pred CCCEEEcCCEEEEEEEeCCEEEEEECC-cEEEcCEEEECCC
Confidence 489999999999999877777777764 4899999999985
No 232
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Probab=97.59 E-value=0.00065 Score=66.72 Aligned_cols=35 Identities=29% Similarity=0.357 Sum_probs=30.2
Q ss_pred CCcEEEECCChHHHHHHHHHHH----cCCCcEEEEecCCC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEE----AGYKDFIILEASSR 62 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~----~G~~~V~vlE~~~~ 62 (448)
..+|+|||||.+|+-+|..|++ .|. +|+++++.++
T Consensus 180 ~~~vvViGgG~iG~E~A~~l~~~~~~~g~-~V~~v~~~~~ 218 (493)
T 1m6i_A 180 VKSITIIGGGFLGSELACALGRKARALGT-EVIQLFPEKG 218 (493)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHHHHHTC-EEEEECSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhhhhhcCC-EEEEEecCcc
Confidence 5689999999999999999987 477 7999987643
No 233
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*
Probab=97.59 E-value=0.0006 Score=66.96 Aligned_cols=35 Identities=23% Similarity=0.482 Sum_probs=32.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
...+|+|||||.+|+-+|..|++.|. +|+|+|+++
T Consensus 193 ~~~~vvVIGgG~ig~E~A~~l~~~g~-~Vtlv~~~~ 227 (490)
T 2bc0_A 193 DIKRVAVVGAGYIGVELAEAFQRKGK-EVVLIDVVD 227 (490)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSS
T ss_pred CCceEEEECCCHHHHHHHHHHHHCCC-eEEEEEccc
Confidence 46789999999999999999999999 899999864
No 234
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*
Probab=97.58 E-value=0.00061 Score=66.66 Aligned_cols=41 Identities=24% Similarity=0.241 Sum_probs=35.1
Q ss_pred CCCceecCceeEEEEecCCcEEEEeCCC---cEEEeCEEEEeec
Q 013178 245 RDPRLKLNKVVRNISYSKDKVTVKTEDG---SVYQANYAIVSVS 285 (448)
Q Consensus 245 ~g~~i~~~~~V~~I~~~~~~v~V~~~~g---~~~~ad~VI~a~p 285 (448)
.|++|+++++|++|+.+++++.|...++ +++.+|.||+|+.
T Consensus 234 ~Gv~v~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~D~vi~a~G 277 (476)
T 3lad_A 234 QGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVG 277 (476)
T ss_dssp TTEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSC
T ss_pred CCCEEEECCEEEEEEEcCCEEEEEEEeCCCcEEEECCEEEEeeC
Confidence 4889999999999999888887777654 5799999999985
No 235
>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*
Probab=97.58 E-value=5.2e-05 Score=73.26 Aligned_cols=35 Identities=17% Similarity=0.383 Sum_probs=31.0
Q ss_pred CcEEEECCChHHHHHHHHHHHcCCC-cEEEEecCCC
Q 013178 28 NSVIIVGAGMSGFMAAKTLEEAGYK-DFIILEASSR 62 (448)
Q Consensus 28 ~dViIIGaGiaGL~aA~~L~~~G~~-~V~vlE~~~~ 62 (448)
++|+|||||.+|++||..|++.+.+ +|+|+|+++.
T Consensus 3 K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~ 38 (430)
T 3hyw_A 3 KHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPY 38 (430)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSE
T ss_pred CcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCC
Confidence 5799999999999999999998733 8999999864
No 236
>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}
Probab=97.58 E-value=0.00056 Score=67.21 Aligned_cols=35 Identities=23% Similarity=0.378 Sum_probs=31.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
...+|+|||||.+|+-+|..|++.|. +|+|+|+.+
T Consensus 197 ~~~~vvViGgG~~g~E~A~~l~~~g~-~Vtlv~~~~ 231 (491)
T 3urh_A 197 VPASMIVVGGGVIGLELGSVWARLGA-KVTVVEFLD 231 (491)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSSS
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCC-EEEEEeccc
Confidence 35689999999999999999999999 899998864
No 237
>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*
Probab=97.56 E-value=4e-05 Score=75.47 Aligned_cols=39 Identities=23% Similarity=0.462 Sum_probs=34.5
Q ss_pred CCCCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 22 PTSPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 22 ~~~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
|..+.+++|+|||||.+|+++|..|++.++ +|+|+|+++
T Consensus 37 p~~~~KprVVIIGgG~AGl~~A~~L~~~~~-~VtLId~~~ 75 (502)
T 4g6h_A 37 PQHSDKPNVLILGSGWGAISFLKHIDTKKY-NVSIISPRS 75 (502)
T ss_dssp CCSCSSCEEEEECSSHHHHHHHHHSCTTTC-EEEEEESSS
T ss_pred CCCCCCCCEEEECCcHHHHHHHHHhhhCCC-cEEEECCCC
Confidence 344556789999999999999999999999 899999986
No 238
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*
Probab=97.54 E-value=6.1e-05 Score=74.32 Aligned_cols=39 Identities=26% Similarity=0.372 Sum_probs=34.8
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCC
Q 013178 24 SPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRV 63 (448)
Q Consensus 24 ~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~ 63 (448)
...++|++|||||.+|+++|++|++.|. +|+|||+....
T Consensus 8 ~~~~~d~~iiG~G~~g~~~a~~l~~~~~-~v~~~e~~~~~ 46 (507)
T 1coy_A 8 DGDRVPALVIGSGYGGAVAALRLTQAGI-PTQIVEMGRSW 46 (507)
T ss_dssp TTCEEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSCCS
T ss_pred cCCcCCEEEECCCHHHHHHHHHHHHCCC-cEEEEECCCCC
Confidence 3467999999999999999999999999 79999997643
No 239
>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1
Probab=97.53 E-value=5.3e-05 Score=76.07 Aligned_cols=38 Identities=24% Similarity=0.405 Sum_probs=34.1
Q ss_pred CCCCcEEEECCChHHHHHHHHHHH-cCCCcEEEEecCCCC
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEE-AGYKDFIILEASSRV 63 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~-~G~~~V~vlE~~~~~ 63 (448)
...+|+||||||.+|+++|.+|++ .|. +|+|||+....
T Consensus 22 ~~~~d~iivG~G~~g~~~a~~l~~~~~~-~v~~~e~g~~~ 60 (587)
T 1gpe_A 22 GKTYDYIIAGGGLTGLTVAAKLTENPKI-KVLVIEKGFYE 60 (587)
T ss_dssp TCEEEEEEECCSHHHHHHHHHHHTSTTC-CEEEEESSCCC
T ss_pred cccCCEEEECcCHHHHHHHHHHHhCCCC-cEEEEecCCcc
Confidence 357999999999999999999999 799 79999997544
No 240
>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}
Probab=97.53 E-value=0.00075 Score=65.77 Aligned_cols=40 Identities=13% Similarity=0.296 Sum_probs=35.2
Q ss_pred CCCceecCceeEEEEecCCc-EEEE-eCCCcEEEeCEEEEeec
Q 013178 245 RDPRLKLNKVVRNISYSKDK-VTVK-TEDGSVYQANYAIVSVS 285 (448)
Q Consensus 245 ~g~~i~~~~~V~~I~~~~~~-v~V~-~~~g~~~~ad~VI~a~p 285 (448)
.|++|+++++|++|+.++++ +.|. +.+|+ +.+|.||+|+.
T Consensus 224 ~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~g~-i~aD~Vv~a~G 265 (463)
T 4dna_A 224 KGIRILCEDIIQSVSADADGRRVATTMKHGE-IVADQVMLALG 265 (463)
T ss_dssp TTCEEECSCCEEEEEECTTSCEEEEESSSCE-EEESEEEECSC
T ss_pred CCCEEECCCEEEEEEEcCCCEEEEEEcCCCe-EEeCEEEEeeC
Confidence 48999999999999988665 6788 88896 99999999985
No 241
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=97.50 E-value=5.6e-05 Score=71.31 Aligned_cols=35 Identities=29% Similarity=0.495 Sum_probs=31.3
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRV 63 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~ 63 (448)
..||+|||||++|++||..|++.| +|+|+|+++..
T Consensus 8 ~~~vvIIGgG~AGl~aA~~l~~~g--~V~lie~~~~~ 42 (367)
T 1xhc_A 8 GSKVVIVGNGPGGFELAKQLSQTY--EVTVIDKEPVP 42 (367)
T ss_dssp -CEEEEECCSHHHHHHHHHHTTTS--EEEEECSSSSC
T ss_pred CCcEEEECCcHHHHHHHHHHhhcC--CEEEEECCCCC
Confidence 359999999999999999999999 59999998754
No 242
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Probab=97.47 E-value=0.00062 Score=66.67 Aligned_cols=35 Identities=29% Similarity=0.456 Sum_probs=32.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
...+|+|||||.+|+-+|..|++.|. +|+|+|+.+
T Consensus 185 ~~~~vvViGgG~~g~e~A~~l~~~g~-~Vtlv~~~~ 219 (480)
T 3cgb_A 185 KVEDVTIIGGGAIGLEMAETFVELGK-KVRMIERND 219 (480)
T ss_dssp CCCEEEEECCHHHHHHHHHHHHHTTC-EEEEECCGG
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCC-eEEEEEeCC
Confidence 46789999999999999999999999 899999864
No 243
>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}
Probab=97.46 E-value=4.4e-05 Score=76.03 Aligned_cols=36 Identities=31% Similarity=0.441 Sum_probs=32.8
Q ss_pred CCcEEEECCChHHHHHHHHHHH-cCCCcEEEEecCCCC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEE-AGYKDFIILEASSRV 63 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~-~G~~~V~vlE~~~~~ 63 (448)
.||+||||||.+|+.+|.+|++ .|. +|+||||....
T Consensus 2 ~yD~IIVG~G~aG~v~A~rLse~~~~-~VlllEaG~~~ 38 (566)
T 3fim_B 2 DFDYVVVGAGNAGNVVAARLTEDPDV-SVLVLEAGVSD 38 (566)
T ss_dssp CEEEEESCCSTTHHHHHHHHTTSTTC-CEEEECSSBCC
T ss_pred CcCEEEECCcHHHHHHHHHHHhCcCC-cEEEEecCCcc
Confidence 5899999999999999999998 688 79999997654
No 244
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*
Probab=97.45 E-value=0.0014 Score=63.71 Aligned_cols=42 Identities=10% Similarity=0.143 Sum_probs=35.7
Q ss_pred CCCceecCceeEEEEecCCcEEEEeC---CCc--EEEeCEEEEeech
Q 013178 245 RDPRLKLNKVVRNISYSKDKVTVKTE---DGS--VYQANYAIVSVSI 286 (448)
Q Consensus 245 ~g~~i~~~~~V~~I~~~~~~v~V~~~---~g~--~~~ad~VI~a~p~ 286 (448)
.|++|++++.|++|+.+++++.|.+. +|+ ++.+|.||+|+..
T Consensus 329 ~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~g~~~~~~~D~Vv~AtG~ 375 (463)
T 3s5w_A 329 PRHAFRCMTTVERATATAQGIELALRDAGSGELSVETYDAVILATGY 375 (463)
T ss_dssp CCSEEETTEEEEEEEEETTEEEEEEEETTTCCEEEEEESEEEECCCE
T ss_pred CCeEEEeCCEEEEEEecCCEEEEEEEEcCCCCeEEEECCEEEEeeCC
Confidence 48899999999999998888877766 664 4899999999974
No 245
>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*
Probab=97.40 E-value=8.7e-05 Score=73.89 Aligned_cols=37 Identities=27% Similarity=0.361 Sum_probs=33.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHHc-CCCcEEEEecCCCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEA-GYKDFIILEASSRV 63 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~-G~~~V~vlE~~~~~ 63 (448)
..+|++|||||.+|+++|++|++. |. +|+|||+....
T Consensus 12 ~~~d~~ivG~G~~G~~~a~~l~~~~~~-~v~~~e~g~~~ 49 (546)
T 2jbv_A 12 REFDYIVVGGGSAGAAVAARLSEDPAV-SVALVEAGPDD 49 (546)
T ss_dssp CEEEEEEECCSHHHHHHHHHHTTSTTS-CEEEECSSCCC
T ss_pred CcCCEEEECcCHHHHHHHHHHHhCCCC-CEEEEecCCcC
Confidence 579999999999999999999998 88 79999998654
No 246
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*
Probab=97.39 E-value=0.0011 Score=66.60 Aligned_cols=34 Identities=21% Similarity=0.496 Sum_probs=31.3
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
..+|+|||||.+|+-+|..|++.|. +|+++|+.+
T Consensus 187 ~~~vvViGgG~~g~e~A~~l~~~g~-~Vtlv~~~~ 220 (588)
T 3ics_A 187 PRHATVIGGGFIGVEMVENLRERGI-EVTLVEMAN 220 (588)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCC-eEEEEecCC
Confidence 4689999999999999999999999 899999864
No 247
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...
Probab=97.36 E-value=0.0016 Score=63.68 Aligned_cols=34 Identities=24% Similarity=0.287 Sum_probs=31.4
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
..+|+|||||.+|+-+|..|++.|. +|+|+|+.+
T Consensus 187 ~~~vvViGgG~~g~E~A~~l~~~g~-~Vtlv~~~~ 220 (478)
T 3dk9_A 187 PGRSVIVGAGYIAVEMAGILSALGS-KTSLMIRHD 220 (478)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred CccEEEECCCHHHHHHHHHHHHcCC-eEEEEEeCC
Confidence 4789999999999999999999999 899999864
No 248
>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*
Probab=97.27 E-value=0.002 Score=59.21 Aligned_cols=35 Identities=14% Similarity=0.276 Sum_probs=31.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
...+|+|||+|.+|+-+|..|++.|. +|+++++++
T Consensus 144 ~~~~v~ViG~G~~g~e~A~~l~~~g~-~Vtlv~~~~ 178 (320)
T 1trb_A 144 RNQKVAVIGGGNTAVEEALYLSNIAS-EVHLIHRRD 178 (320)
T ss_dssp TTSEEEEECSSHHHHHHHHHHTTTSS-EEEEECSSS
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCC-eEEEEEeCC
Confidence 35689999999999999999999999 899998763
No 249
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}
Probab=97.20 E-value=0.0024 Score=61.88 Aligned_cols=35 Identities=20% Similarity=0.439 Sum_probs=31.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
...+|+|||||.+|+-+|..|++.|. +|+|+|+.+
T Consensus 147 ~~~~vvViGgG~~g~E~A~~l~~~g~-~Vtlv~~~~ 181 (449)
T 3kd9_A 147 KVENVVIIGGGYIGIEMAEAFAAQGK-NVTMIVRGE 181 (449)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSS
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCC-eEEEEEcCC
Confidence 34689999999999999999999999 899999864
No 250
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}
Probab=97.19 E-value=0.0031 Score=61.41 Aligned_cols=35 Identities=26% Similarity=0.396 Sum_probs=31.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
...+|+|||||.+|+-+|..|++.|. +|+|+|+.+
T Consensus 171 ~~~~vvViGgG~~g~e~A~~l~~~g~-~Vtlv~~~~ 205 (466)
T 3l8k_A 171 LPQDMVIIGAGYIGLEIASIFRLMGV-QTHIIEMLD 205 (466)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC-EEEEEEeCC
Confidence 35789999999999999999999999 899999864
No 251
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*
Probab=97.17 E-value=0.0038 Score=61.10 Aligned_cols=33 Identities=30% Similarity=0.521 Sum_probs=30.4
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
..+|+|||||.+|+-+|..|++.|. +|+|+++.
T Consensus 187 ~~~vvViGgG~~g~E~A~~l~~~g~-~Vtlv~~~ 219 (483)
T 3dgh_A 187 PGKTLVVGAGYIGLECAGFLKGLGY-EPTVMVRS 219 (483)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCC-EEEEEeCC
Confidence 4689999999999999999999999 89999874
No 252
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}
Probab=97.08 E-value=0.0036 Score=57.87 Aligned_cols=35 Identities=23% Similarity=0.297 Sum_probs=31.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
...+|+|||+|.+|+-+|..|++.|. +|+++++++
T Consensus 151 ~~~~v~viG~G~~g~e~a~~l~~~g~-~V~~v~~~~ 185 (335)
T 2zbw_A 151 QGKRVLIVGGGDSAVDWALNLLDTAR-RITLIHRRP 185 (335)
T ss_dssp TTCEEEEECSSHHHHHHHHHTTTTSS-EEEEECSSS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhhCC-EEEEEEcCC
Confidence 35789999999999999999999999 799998863
No 253
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*
Probab=97.01 E-value=0.0065 Score=59.48 Aligned_cols=34 Identities=24% Similarity=0.347 Sum_probs=30.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
...+|+|||||.+|+-+|..|++.|. +|+++|+.
T Consensus 184 ~~~~vvViGgG~ig~E~A~~l~~~g~-~Vtlv~~~ 217 (488)
T 3dgz_A 184 SPGKTLVVGASYVALECAGFLTGIGL-DTTVMMRS 217 (488)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCC-ceEEEEcC
Confidence 34579999999999999999999999 79999874
No 254
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=96.67 E-value=0.0022 Score=52.08 Aligned_cols=41 Identities=17% Similarity=0.348 Sum_probs=32.9
Q ss_pred CCCCCCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 20 IAPTSPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 20 ~~~~~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
.++......+|+|||+|..|+..|..|.+.|. +|++++++.
T Consensus 12 ~~~~~~~~~~v~IiG~G~iG~~la~~L~~~g~-~V~vid~~~ 52 (155)
T 2g1u_A 12 HMSKKQKSKYIVIFGCGRLGSLIANLASSSGH-SVVVVDKNE 52 (155)
T ss_dssp -----CCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCG
T ss_pred hhhcccCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEECCH
Confidence 34455567889999999999999999999999 899999853
No 255
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=96.52 E-value=0.0042 Score=49.39 Aligned_cols=38 Identities=21% Similarity=0.377 Sum_probs=33.5
Q ss_pred CCCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 23 TSPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 23 ~~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
....+.+|+|||+|-.|...|..|.+.|+ +|+++|++.
T Consensus 3 ~~~~~~~viIiG~G~~G~~la~~L~~~g~-~v~vid~~~ 40 (140)
T 3fwz_A 3 AVDICNHALLVGYGRVGSLLGEKLLASDI-PLVVIETSR 40 (140)
T ss_dssp CCCCCSCEEEECCSHHHHHHHHHHHHTTC-CEEEEESCH
T ss_pred cccCCCCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCH
Confidence 34556789999999999999999999999 899999863
No 256
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}
Probab=96.52 E-value=0.0052 Score=62.99 Aligned_cols=35 Identities=20% Similarity=0.341 Sum_probs=31.4
Q ss_pred CCCcEEEEC--CChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 26 PSNSVIIVG--AGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 26 ~~~dViIIG--aGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
...+|+||| +|.+|+-+|..|++.|. +|+++++.+
T Consensus 522 ~g~~VvViG~ggG~~g~e~A~~L~~~g~-~Vtlv~~~~ 558 (690)
T 3k30_A 522 DGKKVVVYDDDHYYLGGVVAELLAQKGY-EVSIVTPGA 558 (690)
T ss_dssp SSSEEEEEECSCSSHHHHHHHHHHHTTC-EEEEEESSS
T ss_pred CCCEEEEEcCCCCccHHHHHHHHHhCCC-eeEEEeccc
Confidence 446799999 99999999999999999 899999864
No 257
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}
Probab=96.46 E-value=0.0025 Score=60.36 Aligned_cols=37 Identities=19% Similarity=0.198 Sum_probs=33.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVG 64 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~G 64 (448)
..+|+|||||.+|+-+|..|++.|. +|+|+|+.+++.
T Consensus 146 ~~~vvVIGgG~~g~E~A~~l~~~g~-~Vtvv~~~~~~l 182 (385)
T 3klj_A 146 KGKAFIIGGGILGIELAQAIIDSGT-PASIGIILEYPL 182 (385)
T ss_dssp HSCEEEECCSHHHHHHHHHHHHHTC-CEEEECSSSSSC
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCC-eEEEEEcCCccc
Confidence 4689999999999999999999999 799999987654
No 258
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=96.44 E-value=0.0038 Score=49.66 Aligned_cols=34 Identities=21% Similarity=0.372 Sum_probs=30.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
++..|+|+|+|-.|...|..|.+.|+ +|+++|++
T Consensus 5 ~~~~v~I~G~G~iG~~la~~L~~~g~-~V~~id~~ 38 (141)
T 3llv_A 5 GRYEYIVIGSEAAGVGLVRELTAAGK-KVLAVDKS 38 (141)
T ss_dssp -CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEECC
Confidence 34689999999999999999999999 79999985
No 259
>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}
Probab=96.37 E-value=0.0026 Score=58.25 Aligned_cols=36 Identities=14% Similarity=0.270 Sum_probs=32.5
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRV 63 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~ 63 (448)
..+|+|||||..|+-+|..|++.|. +|+|+|+.+++
T Consensus 145 ~k~vvViGgG~ig~E~A~~l~~~g~-~Vtlv~~~~~~ 180 (312)
T 4gcm_A 145 NKRLFVIGGGDSAVEEGTFLTKFAD-KVTIVHRRDEL 180 (312)
T ss_dssp TCEEEEECCSHHHHHHHHHHTTTCS-EEEEECSSSSC
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCC-EEEEEeccccc
Confidence 4689999999999999999999999 89999987643
No 260
>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*
Probab=96.25 E-value=0.018 Score=56.53 Aligned_cols=41 Identities=17% Similarity=0.182 Sum_probs=31.6
Q ss_pred CCCceecCceeEEEEecCCcEEEEeCCCc----EEEeCEEEEeec
Q 013178 245 RDPRLKLNKVVRNISYSKDKVTVKTEDGS----VYQANYAIVSVS 285 (448)
Q Consensus 245 ~g~~i~~~~~V~~I~~~~~~v~V~~~~g~----~~~ad~VI~a~p 285 (448)
.|++|++|+.|++|+.++..+.+...+|+ ++.||.||.|+.
T Consensus 285 ~GV~v~~~~~v~~v~~~~~~~~~~~~dg~~~~~~i~ad~viwa~G 329 (502)
T 4g6h_A 285 TSIKVHLRTAVAKVEEKQLLAKTKHEDGKITEETIPYGTLIWATG 329 (502)
T ss_dssp TTCEEETTEEEEEECSSEEEEEEECTTSCEEEEEEECSEEEECCC
T ss_pred cceeeecCceEEEEeCCceEEEEEecCcccceeeeccCEEEEccC
Confidence 59999999999999754433445566663 689999999875
No 261
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=96.18 E-value=0.0056 Score=48.38 Aligned_cols=33 Identities=33% Similarity=0.635 Sum_probs=30.1
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
.++|+|||+|..|...|..|.+.|+ +|+++|++
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~g~-~v~~~d~~ 36 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEKGH-DIVLIDID 36 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence 3589999999999999999999999 89999975
No 262
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Probab=96.11 E-value=0.006 Score=57.71 Aligned_cols=38 Identities=26% Similarity=0.492 Sum_probs=34.4
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCc
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGG 65 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GG 65 (448)
..+|+|||||.+|+.+|..|++.|. +|+|+|+.+++..
T Consensus 145 ~~~v~ViGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~~~~ 182 (384)
T 2v3a_A 145 KRRVLLLGAGLIGCEFANDLSSGGY-QLDVVAPCEQVMP 182 (384)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSSSST
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCC-eEEEEecCcchhh
Confidence 5789999999999999999999999 8999999876543
No 263
>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*
Probab=96.03 E-value=0.0058 Score=55.69 Aligned_cols=36 Identities=28% Similarity=0.528 Sum_probs=30.4
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 24 SPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 24 ~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
.+...+|+|||||..|..-|..++.+|+ +|+|+|.+
T Consensus 3 ~p~~~~VaViGaG~MG~giA~~~a~~G~-~V~l~D~~ 38 (319)
T 3ado_A 3 SPAAGDVLIVGSGLVGRSWAMLFASGGF-RVKLYDIE 38 (319)
T ss_dssp ----CEEEEECCSHHHHHHHHHHHHTTC-CEEEECSC
T ss_pred CCCCCeEEEECCcHHHHHHHHHHHhCCC-eEEEEECC
Confidence 4456789999999999999999999999 89999975
No 264
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=95.91 E-value=0.0065 Score=57.07 Aligned_cols=35 Identities=31% Similarity=0.578 Sum_probs=32.5
Q ss_pred CcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCC
Q 013178 28 NSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRV 63 (448)
Q Consensus 28 ~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~ 63 (448)
.+|+|||||.+|+-+|..|++.|. +|+|+|+.+++
T Consensus 144 ~~vvViGgG~~g~E~A~~l~~~g~-~Vtlv~~~~~~ 178 (367)
T 1xhc_A 144 GEAIIIGGGFIGLELAGNLAEAGY-HVKLIHRGAMF 178 (367)
T ss_dssp SEEEEEECSHHHHHHHHHHHHTTC-EEEEECSSSCC
T ss_pred CcEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCCee
Confidence 689999999999999999999999 89999998654
No 265
>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*
Probab=95.84 E-value=0.0092 Score=54.33 Aligned_cols=40 Identities=18% Similarity=0.326 Sum_probs=31.4
Q ss_pred CCCCCCCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 19 VIAPTSPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 19 ~~~~~~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
.++|.. ...+|.|||+|..|...|..|+++|+ +|++++++
T Consensus 8 ~~~~~~-~~~~I~VIG~G~mG~~iA~~la~~G~-~V~~~d~~ 47 (302)
T 1f0y_A 8 ASAKKI-IVKHVTVIGGGLMGAGIAQVAAATGH-TVVLVDQT 47 (302)
T ss_dssp ----CC-CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred cccccc-cCCEEEEECCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence 344433 23579999999999999999999999 89999875
No 266
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=95.79 E-value=0.0092 Score=45.47 Aligned_cols=33 Identities=27% Similarity=0.455 Sum_probs=30.3
Q ss_pred CCcEEEECCChHHHHHHHHHHHcC-CCcEEEEecC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAG-YKDFIILEAS 60 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G-~~~V~vlE~~ 60 (448)
..+|+|+|+|..|...+..|.+.| + +|++++++
T Consensus 5 ~~~v~I~G~G~iG~~~~~~l~~~g~~-~v~~~~r~ 38 (118)
T 3ic5_A 5 RWNICVVGAGKIGQMIAALLKTSSNY-SVTVADHD 38 (118)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCSSE-EEEEEESC
T ss_pred cCeEEEECCCHHHHHHHHHHHhCCCc-eEEEEeCC
Confidence 468999999999999999999999 8 79999875
No 267
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=95.76 E-value=0.014 Score=47.10 Aligned_cols=33 Identities=12% Similarity=0.297 Sum_probs=30.8
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
+.+|+|+|+|-.|...|..|.+.|+ +|+++|++
T Consensus 3 ~~~vlI~G~G~vG~~la~~L~~~g~-~V~vid~~ 35 (153)
T 1id1_A 3 KDHFIVCGHSILAINTILQLNQRGQ-NVTVISNL 35 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTC-CEEEEECC
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-CEEEEECC
Confidence 4689999999999999999999999 89999986
No 268
>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*
Probab=95.74 E-value=0.0076 Score=55.00 Aligned_cols=35 Identities=26% Similarity=0.409 Sum_probs=31.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
...+|+|||||..|+-+|..|++.|. +|+|+|+..
T Consensus 151 ~~~~vvViGgG~ig~e~A~~l~~~G~-~Vt~v~~~~ 185 (314)
T 4a5l_A 151 RNKVLMVVGGGDAAMEEALHLTKYGS-KVIILHRRD 185 (314)
T ss_dssp TTSEEEEECSSHHHHHHHHHHTTTSS-EEEEECSSS
T ss_pred CCCeEEEECCChHHHHHHHHHHHhCC-eeeeecccc
Confidence 45789999999999999999999999 899999753
No 269
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=95.62 E-value=0.012 Score=46.56 Aligned_cols=33 Identities=18% Similarity=0.357 Sum_probs=30.3
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
..+|+|+|+|..|...|..|.+.|. +|++++++
T Consensus 6 ~~~v~I~G~G~iG~~~a~~l~~~g~-~v~~~d~~ 38 (144)
T 2hmt_A 6 NKQFAVIGLGRFGGSIVKELHRMGH-EVLAVDIN 38 (144)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTC-CCEEEESC
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 4579999999999999999999999 79999875
No 270
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.56 E-value=0.018 Score=47.93 Aligned_cols=33 Identities=27% Similarity=0.280 Sum_probs=30.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHc-CCCcEEEEecC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEA-GYKDFIILEAS 60 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~-G~~~V~vlE~~ 60 (448)
..+|+|||+|..|...|..|.+. |+ +|+++|++
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~g~-~V~vid~~ 72 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARYGK-ISLGIEIR 72 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHHCS-CEEEEESC
T ss_pred CCcEEEECCCHHHHHHHHHHHhccCC-eEEEEECC
Confidence 56899999999999999999999 99 79999985
No 271
>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*
Probab=95.49 E-value=0.014 Score=56.10 Aligned_cols=61 Identities=20% Similarity=0.323 Sum_probs=46.1
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCCceEEEceeCCceeeecceeccCCCCCCCHHHHHHHHcCCcee
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVGGRLHKGNIGGHTIELGANWVNSGGPKSSPSLQIAKKIKLKTF 106 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~l~~~lgl~~~ 106 (448)
..+|+|||||..|+-+|..|++.|. +|+|+|+.+++.... .. .....+.+.+++.|++..
T Consensus 147 ~~~vvViGgG~ig~E~A~~l~~~g~-~Vtlv~~~~~ll~~~-----------------d~--~~~~~~~~~l~~~gV~i~ 206 (437)
T 4eqs_A 147 VDKVLVVGAGYVSLEVLENLYERGL-HPTLIHRSDKINKLM-----------------DA--DMNQPILDELDKREIPYR 206 (437)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSCCSTTS-----------------CG--GGGHHHHHHHHHTTCCEE
T ss_pred CcEEEEECCccchhhhHHHHHhcCC-cceeeeeeccccccc-----------------cc--hhHHHHHHHhhccceEEE
Confidence 4689999999999999999999999 899999987663210 00 123446677888888765
Q ss_pred e
Q 013178 107 Y 107 (448)
Q Consensus 107 ~ 107 (448)
.
T Consensus 207 ~ 207 (437)
T 4eqs_A 207 L 207 (437)
T ss_dssp E
T ss_pred e
Confidence 4
No 272
>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Probab=95.36 E-value=0.016 Score=55.64 Aligned_cols=38 Identities=26% Similarity=0.476 Sum_probs=34.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVG 64 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~G 64 (448)
...+|+|||||.+|+-+|..|++.|. +|+|+|+.+++.
T Consensus 148 ~~~~vvViGgG~~g~E~A~~l~~~G~-~Vtlv~~~~~~l 185 (431)
T 1q1r_A 148 ADNRLVVIGGGYIGLEVAATAIKANM-HVTLLDTAARVL 185 (431)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSSTT
T ss_pred cCCeEEEECCCHHHHHHHHHHHhCCC-EEEEEEeCCccc
Confidence 35789999999999999999999999 899999987653
No 273
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*
Probab=95.31 E-value=0.018 Score=54.84 Aligned_cols=38 Identities=32% Similarity=0.491 Sum_probs=34.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVG 64 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~G 64 (448)
...+|+|||||.+|+-+|..|++.|. +|+|+|+.+++-
T Consensus 142 ~~~~vvViGgG~~g~E~A~~l~~~g~-~Vtvv~~~~~~l 179 (410)
T 3ef6_A 142 SATRLLIVGGGLIGCEVATTARKLGL-SVTILEAGDELL 179 (410)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSSSS
T ss_pred cCCeEEEECCCHHHHHHHHHHHhCCC-eEEEEecCCccc
Confidence 35789999999999999999999999 899999987664
No 274
>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*
Probab=95.29 E-value=0.019 Score=51.61 Aligned_cols=33 Identities=18% Similarity=0.290 Sum_probs=30.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
..+|+|||+|..|...|..|+++|+ +|++++++
T Consensus 4 ~~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~ 36 (283)
T 4e12_A 4 ITNVTVLGTGVLGSQIAFQTAFHGF-AVTAYDIN 36 (283)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC-eEEEEeCC
Confidence 4689999999999999999999999 89999875
No 275
>2dpo_A L-gulonate 3-dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.70A {Oryctolagus cuniculus} PDB: 2ep9_A* 3ado_A 3a97_A 3adp_A* 3f3s_A*
Probab=95.26 E-value=0.017 Score=52.91 Aligned_cols=34 Identities=24% Similarity=0.463 Sum_probs=30.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
+..+|.|||+|..|.+.|..|+++|+ +|++++.+
T Consensus 5 ~~~kI~vIGaG~MG~~iA~~la~~G~-~V~l~d~~ 38 (319)
T 2dpo_A 5 AAGDVLIVGSGLVGRSWAMLFASGGF-RVKLYDIE 38 (319)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHTTC-CEEEECSC
T ss_pred CCceEEEEeeCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 34689999999999999999999999 79999975
No 276
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=95.23 E-value=0.017 Score=55.84 Aligned_cols=35 Identities=23% Similarity=0.334 Sum_probs=32.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
+..+|.|||.|.+|+++|..|++.|+ +|++.|.+.
T Consensus 8 ~~k~v~viG~G~sG~s~A~~l~~~G~-~V~~~D~~~ 42 (451)
T 3lk7_A 8 ENKKVLVLGLARSGEAAARLLAKLGA-IVTVNDGKP 42 (451)
T ss_dssp TTCEEEEECCTTTHHHHHHHHHHTTC-EEEEEESSC
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEeCCc
Confidence 45789999999999999999999999 899999864
No 277
>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}
Probab=95.22 E-value=0.029 Score=52.12 Aligned_cols=37 Identities=22% Similarity=0.381 Sum_probs=33.9
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 24 SPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 24 ~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
.-.+.+|+|+|||.+|..+|..|...|.++|+++|++
T Consensus 185 ~l~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~ 221 (398)
T 2a9f_A 185 SLDEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKF 221 (398)
T ss_dssp CTTSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred CCCccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECC
Confidence 4567899999999999999999999998789999987
No 278
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}
Probab=95.07 E-value=0.019 Score=53.61 Aligned_cols=42 Identities=10% Similarity=0.305 Sum_probs=34.5
Q ss_pred CC-CceecCceeEEEEecCCcEEEEeCCCcEEE-eCEEEEeech
Q 013178 245 RD-PRLKLNKVVRNISYSKDKVTVKTEDGSVYQ-ANYAIVSVSI 286 (448)
Q Consensus 245 ~g-~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~-ad~VI~a~p~ 286 (448)
.| +++++++.|++|+.+++++.|.+.+|+++. +|.||+|+..
T Consensus 227 ~g~v~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~d~vi~a~G~ 270 (369)
T 3d1c_A 227 GARIEMNVHYTVKDIDFNNGQYHISFDSGQSVHTPHEPILATGF 270 (369)
T ss_dssp TCCEEEECSCCEEEEEEETTEEEEEESSSCCEEESSCCEECCCB
T ss_pred CCcEEEecCcEEEEEEecCCceEEEecCCeEeccCCceEEeecc
Confidence 35 899999999999877777888888887665 5999998863
No 279
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Probab=94.95 E-value=0.016 Score=55.73 Aligned_cols=36 Identities=17% Similarity=0.386 Sum_probs=32.5
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRV 63 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~ 63 (448)
.++|.|||.|.+|+++|..|++.|+ +|++.|.+...
T Consensus 5 ~~~v~viG~G~~G~~~a~~l~~~G~-~v~~~D~~~~~ 40 (439)
T 2x5o_A 5 GKNVVIIGLGLTGLSCVDFFLARGV-TPRVMDTRMTP 40 (439)
T ss_dssp TCCEEEECCHHHHHHHHHHHHTTTC-CCEEEESSSSC
T ss_pred CCEEEEEeecHHHHHHHHHHHhCCC-EEEEEECCCCc
Confidence 4689999999999999999999999 79999987654
No 280
>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}
Probab=94.95 E-value=0.023 Score=52.17 Aligned_cols=32 Identities=19% Similarity=0.369 Sum_probs=30.2
Q ss_pred CcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 28 NSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 28 ~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
++|+|||+|..|.+.|..|+++|. +|+++.++
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~-~V~~~~r~ 34 (320)
T 3i83_A 3 LNILVIGTGAIGSFYGALLAKTGH-CVSVVSRS 34 (320)
T ss_dssp CEEEEESCCHHHHHHHHHHHHTTC-EEEEECST
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCC
Confidence 689999999999999999999999 89999875
No 281
>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*
Probab=94.91 E-value=0.025 Score=54.91 Aligned_cols=37 Identities=16% Similarity=0.118 Sum_probs=33.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRV 63 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~ 63 (448)
...+|+|||||.+|+-.|..|++.|. +|+|+++++++
T Consensus 196 ~~k~VvVVG~G~sg~eiA~~l~~~g~-~V~li~~~~~~ 232 (464)
T 2xve_A 196 KDKTVLLVGSSYSAEDIGSQCYKYGA-KKLISCYRTAP 232 (464)
T ss_dssp TTSEEEEECCSTTHHHHHHHHHHTTC-SEEEEECSSCC
T ss_pred CCCEEEEEcCCCCHHHHHHHHHHhCC-eEEEEEECCCC
Confidence 45789999999999999999999999 79999987654
No 282
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=94.90 E-value=0.023 Score=48.81 Aligned_cols=32 Identities=22% Similarity=0.499 Sum_probs=29.9
Q ss_pred CcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 28 NSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 28 ~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
++|+|||+|-.|...|..|.+.|+ +|+++|++
T Consensus 1 M~iiIiG~G~~G~~la~~L~~~g~-~v~vid~~ 32 (218)
T 3l4b_C 1 MKVIIIGGETTAYYLARSMLSRKY-GVVIINKD 32 (218)
T ss_dssp CCEEEECCHHHHHHHHHHHHHTTC-CEEEEESC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence 369999999999999999999999 89999975
No 283
>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*
Probab=94.88 E-value=0.023 Score=51.64 Aligned_cols=35 Identities=14% Similarity=0.227 Sum_probs=31.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
...+|+|||+|.+|+-+|..|++.|. +|+++++++
T Consensus 142 ~~~~v~VvG~G~~g~e~A~~l~~~g~-~Vtlv~~~~ 176 (311)
T 2q0l_A 142 KNKEVAVLGGGDTAVEEAIYLANICK-KVYLIHRRD 176 (311)
T ss_dssp TTSEEEEECCSHHHHHHHHHHHTTSS-EEEEECSSS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCC-EEEEEeeCC
Confidence 34789999999999999999999999 899999875
No 284
>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}
Probab=94.84 E-value=0.023 Score=51.86 Aligned_cols=32 Identities=31% Similarity=0.412 Sum_probs=29.4
Q ss_pred CcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 28 NSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 28 ~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
++|+|||+|..|.+.|..|+++|. +|+++.++
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~-~V~~~~r~ 34 (312)
T 3hn2_A 3 LRIAIVGAGALGLYYGALLQRSGE-DVHFLLRR 34 (312)
T ss_dssp -CEEEECCSTTHHHHHHHHHHTSC-CEEEECST
T ss_pred CEEEEECcCHHHHHHHHHHHHCCC-eEEEEEcC
Confidence 589999999999999999999999 89999875
No 285
>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*
Probab=94.83 E-value=0.03 Score=51.92 Aligned_cols=37 Identities=22% Similarity=0.407 Sum_probs=33.7
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 24 SPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 24 ~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
.-+..+|+|+|||.+|..+|..|...|.++|+|++++
T Consensus 189 ~l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~ 225 (388)
T 1vl6_A 189 KIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK 225 (388)
T ss_dssp CTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred CCCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence 3467899999999999999999999998789999986
No 286
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}
Probab=94.74 E-value=0.033 Score=53.15 Aligned_cols=36 Identities=33% Similarity=0.594 Sum_probs=33.5
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRV 63 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~ 63 (448)
..+|+|||+|.+|+-+|..|++.|. +|+++|+.+++
T Consensus 152 ~~~vvViGgG~~g~e~A~~l~~~g~-~Vtvv~~~~~~ 187 (415)
T 3lxd_A 152 AKNAVVIGGGYIGLEAAAVLTKFGV-NVTLLEALPRV 187 (415)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSST
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCC-eEEEEecCCch
Confidence 5789999999999999999999999 89999998765
No 287
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Probab=94.68 E-value=0.034 Score=55.48 Aligned_cols=36 Identities=25% Similarity=0.464 Sum_probs=33.0
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRV 63 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~ 63 (448)
..+|+|||||.+|+-+|..|++.|. +|+++|+.+++
T Consensus 151 ~~~vvViGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~~ 186 (565)
T 3ntd_A 151 VEHATVVGGGFIGLEMMESLHHLGI-KTTLLELADQV 186 (565)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCC-cEEEEEcCCcc
Confidence 4589999999999999999999999 89999998654
No 288
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*
Probab=94.67 E-value=0.025 Score=56.00 Aligned_cols=36 Identities=14% Similarity=0.270 Sum_probs=33.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSR 62 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~ 62 (448)
...+|+|||+|.+|+-+|..|++.|. +|+|++++++
T Consensus 177 ~~krV~VIG~G~sgve~a~~l~~~~~-~Vtv~~r~~~ 212 (540)
T 3gwf_A 177 AGRRVGVIGTGSTGQQVITSLAPEVE-HLTVFVRTPQ 212 (540)
T ss_dssp TTSEEEEECCSHHHHHHHHHHTTTCS-EEEEEESSCC
T ss_pred ccceEEEECCCchHHHHHHHHHhhCC-EEEEEECCCC
Confidence 46789999999999999999999999 8999999764
No 289
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Probab=94.67 E-value=0.025 Score=51.43 Aligned_cols=35 Identities=29% Similarity=0.356 Sum_probs=31.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSR 62 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~ 62 (448)
..+|+|||+|.+|+-+|..|++.|. +|+++++.++
T Consensus 144 ~~~v~VvG~G~~g~e~A~~l~~~g~-~Vtlv~~~~~ 178 (310)
T 1fl2_A 144 GKRVAVIGGGNSGVEAAIDLAGIVE-HVTLLEFAPE 178 (310)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTBS-EEEEECSSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHHhCC-EEEEEEeCcc
Confidence 4689999999999999999999999 8999998753
No 290
>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}
Probab=94.65 E-value=0.037 Score=53.05 Aligned_cols=35 Identities=29% Similarity=0.371 Sum_probs=32.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
...+|.|||+|..|...|..|+++|+ +|+++|.+.
T Consensus 53 ~i~kVaVIGaG~MG~~IA~~la~aG~-~V~l~D~~~ 87 (460)
T 3k6j_A 53 DVNSVAIIGGGTMGKAMAICFGLAGI-ETFLVVRNE 87 (460)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH
T ss_pred cCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEECcH
Confidence 34689999999999999999999999 899999864
No 291
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*
Probab=94.57 E-value=0.031 Score=55.43 Aligned_cols=36 Identities=19% Similarity=0.410 Sum_probs=33.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSR 62 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~ 62 (448)
...+|+|||+|.+|+-+|..|++.|. +|+|++++++
T Consensus 190 ~~krV~VIG~G~sgve~a~~l~~~~~-~Vtv~~r~~~ 225 (549)
T 4ap3_A 190 TGKRVGVIGTGSSGIQSIPIIAEQAE-QLFVFQRSAN 225 (549)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHHBS-EEEEEESSCC
T ss_pred CCCEEEEECCCchHHHHHHHHHhhCC-EEEEEECCCC
Confidence 46789999999999999999999999 8999999764
No 292
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}
Probab=94.56 E-value=0.033 Score=52.91 Aligned_cols=37 Identities=30% Similarity=0.500 Sum_probs=33.5
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVG 64 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~G 64 (448)
..+|+|||+|.+|+-+|..|++.|. +|+++|+.+++.
T Consensus 142 ~~~vvViGgG~~g~e~A~~l~~~g~-~Vtvv~~~~~~~ 178 (404)
T 3fg2_P 142 KKHVVVIGAGFIGLEFAATARAKGL-EVDVVELAPRVM 178 (404)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSSTT
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCCcch
Confidence 4689999999999999999999999 899999987653
No 293
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}
Probab=94.56 E-value=0.038 Score=53.40 Aligned_cols=37 Identities=24% Similarity=0.304 Sum_probs=33.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVG 64 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~G 64 (448)
..+++|||||.+|+-+|..|++.|. +|+++|+.+++.
T Consensus 147 ~~~vvViGgG~~g~E~A~~l~~~g~-~Vtlv~~~~~~l 183 (452)
T 3oc4_A 147 SQTVAVIGAGPIGMEAIDFLVKMKK-TVHVFESLENLL 183 (452)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC-eEEEEEccCccc
Confidence 5789999999999999999999999 899999987653
No 294
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=94.55 E-value=0.037 Score=47.46 Aligned_cols=34 Identities=21% Similarity=0.351 Sum_probs=31.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
+...|+|||||-.|...|..|.++|. +|+|+..+
T Consensus 30 ~gk~VLVVGgG~va~~ka~~Ll~~GA-~VtVvap~ 63 (223)
T 3dfz_A 30 KGRSVLVVGGGTIATRRIKGFLQEGA-AITVVAPT 63 (223)
T ss_dssp TTCCEEEECCSHHHHHHHHHHGGGCC-CEEEECSS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCC
Confidence 56799999999999999999999999 79999764
No 295
>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}
Probab=94.52 E-value=0.045 Score=52.14 Aligned_cols=38 Identities=18% Similarity=0.308 Sum_probs=33.2
Q ss_pred CCCCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 22 PTSPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 22 ~~~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
|....+.+|+|||.|..||..|..|+++|+ +|+.+|-+
T Consensus 16 p~~~~m~~IaViGlGYVGLp~A~~~A~~G~-~V~g~Did 53 (444)
T 3vtf_A 16 PRGSHMASLSVLGLGYVGVVHAVGFALLGH-RVVGYDVN 53 (444)
T ss_dssp CTTCCCCEEEEECCSHHHHHHHHHHHHHTC-EEEEECSC
T ss_pred CCCCCCCEEEEEccCHHHHHHHHHHHhCCC-cEEEEECC
Confidence 334457899999999999999999999999 89999864
No 296
>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}
Probab=94.52 E-value=0.034 Score=50.05 Aligned_cols=33 Identities=21% Similarity=0.374 Sum_probs=30.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
-+++|.|||+|..|...|..|+ +|+ +|++++++
T Consensus 11 ~~~~V~vIG~G~MG~~iA~~la-aG~-~V~v~d~~ 43 (293)
T 1zej_A 11 HHMKVFVIGAGLMGRGIAIAIA-SKH-EVVLQDVS 43 (293)
T ss_dssp -CCEEEEECCSHHHHHHHHHHH-TTS-EEEEECSC
T ss_pred CCCeEEEEeeCHHHHHHHHHHH-cCC-EEEEEECC
Confidence 3678999999999999999999 999 89999975
No 297
>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*
Probab=94.49 E-value=0.029 Score=51.54 Aligned_cols=36 Identities=19% Similarity=0.337 Sum_probs=32.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSR 62 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~ 62 (448)
...+|+|||+|.+|+-+|..|++.|. +|++++++++
T Consensus 158 ~~~~v~VvG~G~~g~e~A~~l~~~g~-~V~lv~~~~~ 193 (333)
T 1vdc_A 158 RNKPLAVIGGGDSAMEEANFLTKYGS-KVYIIHRRDA 193 (333)
T ss_dssp TTSEEEEECCSHHHHHHHHHHTTTSS-EEEEECSSSS
T ss_pred CCCeEEEECCChHHHHHHHHHHhcCC-eEEEEecCCc
Confidence 45789999999999999999999999 8999998753
No 298
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1
Probab=94.48 E-value=0.023 Score=50.46 Aligned_cols=34 Identities=15% Similarity=0.422 Sum_probs=31.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
+...|+|||||-.|+..|..|.+.|. +|+|++.+
T Consensus 12 ~~k~VLVVGgG~va~rka~~Ll~~Ga-~VtViap~ 45 (274)
T 1kyq_A 12 KDKRILLIGGGEVGLTRLYKLMPTGC-KLTLVSPD 45 (274)
T ss_dssp TTCEEEEEEESHHHHHHHHHHGGGTC-EEEEEEEE
T ss_pred CCCEEEEECCcHHHHHHHHHHHhCCC-EEEEEcCC
Confidence 45789999999999999999999999 89999875
No 299
>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=94.46 E-value=0.032 Score=50.48 Aligned_cols=33 Identities=27% Similarity=0.291 Sum_probs=30.3
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
+++|+|||+|.-|.+.|..|+++|. +|+++.++
T Consensus 2 ~mkI~iiGaGa~G~~~a~~L~~~g~-~V~~~~r~ 34 (294)
T 3g17_A 2 SLSVAIIGPGAVGTTIAYELQQSLP-HTTLIGRH 34 (294)
T ss_dssp -CCEEEECCSHHHHHHHHHHHHHCT-TCEEEESS
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCC-eEEEEEec
Confidence 3589999999999999999999999 89999986
No 300
>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}
Probab=94.45 E-value=0.044 Score=46.75 Aligned_cols=37 Identities=19% Similarity=0.253 Sum_probs=31.5
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCC
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSR 62 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~ 62 (448)
....+|.|||+|..|.+.|..|++.|+ +|++++++..
T Consensus 17 ~~~~~I~iiG~G~mG~~la~~l~~~g~-~V~~~~~~~~ 53 (209)
T 2raf_A 17 FQGMEITIFGKGNMGQAIGHNFEIAGH-EVTYYGSKDQ 53 (209)
T ss_dssp ---CEEEEECCSHHHHHHHHHHHHTTC-EEEEECTTCC
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHH
Confidence 446689999999999999999999999 8999998754
No 301
>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}
Probab=94.44 E-value=0.032 Score=51.44 Aligned_cols=36 Identities=14% Similarity=0.265 Sum_probs=32.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSR 62 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~ 62 (448)
...+|+|||+|.+|+-.|..|++.|. +|++++++++
T Consensus 154 ~~~~v~ViG~G~~g~e~a~~l~~~g~-~V~l~~~~~~ 189 (335)
T 2a87_A 154 RDQDIAVIGGGDSAMEEATFLTRFAR-SVTLVHRRDE 189 (335)
T ss_dssp TTCEEEEECSSHHHHHHHHHHTTTCS-EEEEECSSSS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhCC-eEEEEEcCCc
Confidence 45789999999999999999999999 8999998753
No 302
>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}
Probab=94.41 E-value=0.029 Score=50.81 Aligned_cols=36 Identities=14% Similarity=0.078 Sum_probs=31.5
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
.++.+|.|||.|..|...|..|+++|+ +|++++++.
T Consensus 13 ~~~~~I~vIG~G~mG~~~A~~l~~~G~-~V~~~dr~~ 48 (296)
T 3qha_A 13 TEQLKLGYIGLGNMGAPMATRMTEWPG-GVTVYDIRI 48 (296)
T ss_dssp --CCCEEEECCSTTHHHHHHHHTTSTT-CEEEECSST
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCC-eEEEEeCCH
Confidence 345789999999999999999999999 799999864
No 303
>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}
Probab=94.38 E-value=0.044 Score=51.45 Aligned_cols=34 Identities=24% Similarity=0.448 Sum_probs=31.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
...+|+|||+|..|+.+|..|...|. +|+++|.+
T Consensus 189 ~~~kV~ViG~G~iG~~aa~~a~~lGa-~V~v~D~~ 222 (405)
T 4dio_A 189 PAAKIFVMGAGVAGLQAIATARRLGA-VVSATDVR 222 (405)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcCC
Confidence 45799999999999999999999999 89999875
No 304
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=94.37 E-value=0.082 Score=48.53 Aligned_cols=34 Identities=24% Similarity=0.268 Sum_probs=30.4
Q ss_pred CCcEEEECCChHHHH-HHHHHHHcCCCcEEEEecCC
Q 013178 27 SNSVIIVGAGMSGFM-AAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 27 ~~dViIIGaGiaGL~-aA~~L~~~G~~~V~vlE~~~ 61 (448)
.++|.|||.|-+|++ +|..|.+.|+ +|++.|++.
T Consensus 4 ~~~i~~iGiGg~Gms~~A~~L~~~G~-~V~~~D~~~ 38 (326)
T 3eag_A 4 MKHIHIIGIGGTFMGGLAAIAKEAGF-EVSGCDAKM 38 (326)
T ss_dssp CCEEEEESCCSHHHHHHHHHHHHTTC-EEEEEESSC
T ss_pred CcEEEEEEECHHHHHHHHHHHHhCCC-EEEEEcCCC
Confidence 468999999999997 7889999999 899999863
No 305
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*
Probab=94.34 E-value=0.029 Score=55.54 Aligned_cols=36 Identities=14% Similarity=0.349 Sum_probs=33.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSR 62 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~ 62 (448)
...+|+|||+|.+|+-+|..|++.+. +|+|++++++
T Consensus 184 ~~krV~VIG~G~tgve~a~~la~~~~-~Vtv~~r~~~ 219 (545)
T 3uox_A 184 TGKRVGVIGTGATGVQIIPIAAETAK-ELYVFQRTPN 219 (545)
T ss_dssp BTCEEEEECCSHHHHHHHHHHTTTBS-EEEEEESSCC
T ss_pred CCCeEEEECCCccHHHHHHHHHhhCC-EEEEEEcCCC
Confidence 46789999999999999999999998 8999999864
No 306
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}
Probab=94.32 E-value=0.035 Score=50.86 Aligned_cols=34 Identities=12% Similarity=0.296 Sum_probs=31.4
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
..+|+|||+|.+|+-+|..|++.|. +|+++++++
T Consensus 152 ~~~v~VvG~G~~g~e~A~~l~~~g~-~Vtlv~~~~ 185 (325)
T 2q7v_A 152 GKKVVVIGGGDAAVEEGMFLTKFAD-EVTVIHRRD 185 (325)
T ss_dssp TCEEEEECCSHHHHHHHHHHTTTCS-EEEEECSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCC-EEEEEeCCC
Confidence 4689999999999999999999999 899999864
No 307
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Probab=94.27 E-value=0.05 Score=52.59 Aligned_cols=38 Identities=18% Similarity=0.300 Sum_probs=32.8
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCC
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSR 62 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~ 62 (448)
....+|+|||||.+|+-+|..+.+.|.++|++++++++
T Consensus 262 ~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~ 299 (456)
T 2vdc_G 262 AAGKHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDR 299 (456)
T ss_dssp CCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCS
T ss_pred cCCCEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCCc
Confidence 34678999999999999999999999745999998753
No 308
>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}
Probab=94.25 E-value=0.041 Score=52.94 Aligned_cols=32 Identities=22% Similarity=0.470 Sum_probs=30.3
Q ss_pred CcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 28 NSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 28 ~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
++|.|||+|..|+..|..|+++|+ +|++++.+
T Consensus 3 mkI~VIG~G~vG~~lA~~La~~G~-~V~~~D~~ 34 (450)
T 3gg2_A 3 LDIAVVGIGYVGLVSATCFAELGA-NVRCIDTD 34 (450)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred CEEEEECcCHHHHHHHHHHHhcCC-EEEEEECC
Confidence 589999999999999999999999 89999975
No 309
>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*
Probab=94.25 E-value=0.039 Score=53.24 Aligned_cols=37 Identities=16% Similarity=0.092 Sum_probs=33.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCc-EEEEecCCCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKD-FIILEASSRV 63 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~-V~vlE~~~~~ 63 (448)
...+|+|||||.+|+-.|..|++.|. + |+|+++++.+
T Consensus 211 ~~k~VvVvG~G~sg~e~A~~l~~~~~-~~V~l~~r~~~~ 248 (447)
T 2gv8_A 211 VGESVLVVGGASSANDLVRHLTPVAK-HPIYQSLLGGGD 248 (447)
T ss_dssp TTCCEEEECSSHHHHHHHHHHTTTSC-SSEEEECTTCCS
T ss_pred CCCEEEEEccCcCHHHHHHHHHHHhC-CcEEEEeCCCCc
Confidence 46789999999999999999999998 7 9999987644
No 310
>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*
Probab=94.20 E-value=0.049 Score=49.01 Aligned_cols=32 Identities=16% Similarity=0.202 Sum_probs=30.0
Q ss_pred cEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 29 SVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 29 dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
+|.|||+|..|.+.|..|+++|+ +|++++++.
T Consensus 2 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~r~~ 33 (291)
T 1ks9_A 2 KITVLGCGALGQLWLTALCKQGH-EVQGWLRVP 33 (291)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred eEEEECcCHHHHHHHHHHHhCCC-CEEEEEcCc
Confidence 69999999999999999999999 899999865
No 311
>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}
Probab=94.19 E-value=0.043 Score=50.03 Aligned_cols=32 Identities=25% Similarity=0.390 Sum_probs=29.9
Q ss_pred CcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 28 NSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 28 ~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
++|.|||+|..|.+.|..|+++|+ +|++++++
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~r~ 35 (316)
T 2ew2_A 4 MKIAIAGAGAMGSRLGIMLHQGGN-DVTLIDQW 35 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred CeEEEECcCHHHHHHHHHHHhCCC-cEEEEECC
Confidence 589999999999999999999999 89999874
No 312
>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}
Probab=94.18 E-value=0.05 Score=49.60 Aligned_cols=36 Identities=17% Similarity=0.267 Sum_probs=32.3
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
..+.+|.|||.|..|...|..|+++|+ +|++++++.
T Consensus 19 ~~m~~I~iIG~G~mG~~~A~~l~~~G~-~V~~~dr~~ 54 (310)
T 3doj_A 19 SHMMEVGFLGLGIMGKAMSMNLLKNGF-KVTVWNRTL 54 (310)
T ss_dssp CCSCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSG
T ss_pred ccCCEEEEECccHHHHHHHHHHHHCCC-eEEEEeCCH
Confidence 345789999999999999999999999 899998763
No 313
>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*
Probab=94.17 E-value=0.043 Score=53.25 Aligned_cols=34 Identities=26% Similarity=0.513 Sum_probs=31.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
..++|+|||+|..|+..|..|+++|+ +|++++.+
T Consensus 7 ~~~~I~VIG~G~vG~~lA~~la~~G~-~V~~~d~~ 40 (478)
T 2y0c_A 7 GSMNLTIIGSGSVGLVTGACLADIGH-DVFCLDVD 40 (478)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred CCceEEEECcCHHHHHHHHHHHhCCC-EEEEEECC
Confidence 35789999999999999999999999 89999874
No 314
>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}
Probab=94.14 E-value=0.048 Score=50.71 Aligned_cols=34 Identities=21% Similarity=0.352 Sum_probs=31.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
...+|+|||+|..|+.+|..|...|. +|++++++
T Consensus 183 ~~~kV~ViG~G~iG~~aa~~a~~lGa-~V~v~D~~ 216 (381)
T 3p2y_A 183 KPASALVLGVGVAGLQALATAKRLGA-KTTGYDVR 216 (381)
T ss_dssp CCCEEEEESCSHHHHHHHHHHHHHTC-EEEEECSS
T ss_pred CCCEEEEECchHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 46799999999999999999999999 89999875
No 315
>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6
Probab=94.14 E-value=0.046 Score=50.95 Aligned_cols=33 Identities=21% Similarity=0.318 Sum_probs=30.3
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
+.+|+|||+|..|...|..|+++|+ +|++++++
T Consensus 4 ~mki~iiG~G~~G~~~a~~L~~~g~-~V~~~~r~ 36 (359)
T 1bg6_A 4 SKTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDID 36 (359)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred cCeEEEECCCHHHHHHHHHHHhCCC-EEEEEeCC
Confidence 3689999999999999999999999 89999874
No 316
>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}
Probab=94.13 E-value=0.05 Score=50.23 Aligned_cols=33 Identities=30% Similarity=0.342 Sum_probs=30.2
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
.++|+|||+|..|.+.|..|+++|+ +|++++++
T Consensus 3 ~mkI~IiGaG~~G~~~a~~L~~~g~-~V~~~~r~ 35 (335)
T 3ghy_A 3 LTRICIVGAGAVGGYLGARLALAGE-AINVLARG 35 (335)
T ss_dssp CCCEEEESCCHHHHHHHHHHHHTTC-CEEEECCH
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCC-EEEEEECh
Confidence 3689999999999999999999999 89999863
No 317
>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}
Probab=94.09 E-value=0.075 Score=48.31 Aligned_cols=35 Identities=26% Similarity=0.321 Sum_probs=31.7
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
.+..+|.|||.|..|...|..|++.|+ +|++++++
T Consensus 7 ~~~~~IgiIG~G~mG~~~A~~l~~~G~-~V~~~dr~ 41 (306)
T 3l6d_A 7 SFEFDVSVIGLGAMGTIMAQVLLKQGK-RVAIWNRS 41 (306)
T ss_dssp CCSCSEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 345789999999999999999999999 79999875
No 318
>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}
Probab=94.04 E-value=0.051 Score=49.35 Aligned_cols=34 Identities=29% Similarity=0.245 Sum_probs=30.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
++.+|.|||.|..|...|..|+++|+ +|++++++
T Consensus 6 ~~~~I~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~ 39 (303)
T 3g0o_A 6 TDFHVGIVGLGSMGMGAARSCLRAGL-STWGADLN 39 (303)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC-eEEEEECC
Confidence 45689999999999999999999999 89999875
No 319
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*
Probab=94.04 E-value=0.062 Score=46.04 Aligned_cols=34 Identities=21% Similarity=0.266 Sum_probs=30.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
+..+|.|||+|..|.+.|..|.+.|+ +|++++++
T Consensus 27 ~~~~I~iiG~G~~G~~la~~l~~~g~-~V~~~~r~ 60 (215)
T 2vns_A 27 EAPKVGILGSGDFARSLATRLVGSGF-KVVVGSRN 60 (215)
T ss_dssp --CCEEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 45689999999999999999999999 79999875
No 320
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*
Probab=94.03 E-value=0.072 Score=48.97 Aligned_cols=35 Identities=17% Similarity=0.282 Sum_probs=30.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
+.+|+|||||-.|.+.|..|++.|+-+|+++|.+.
T Consensus 9 ~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~ 43 (331)
T 1pzg_A 9 RKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK 43 (331)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCh
Confidence 46899999999999999999999972499999763
No 321
>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}
Probab=94.02 E-value=0.051 Score=50.52 Aligned_cols=37 Identities=16% Similarity=0.275 Sum_probs=31.1
Q ss_pred CCCCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 23 TSPPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 23 ~~~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
.+.+.++|.|||.|..|...|..|+++|+ +|++++++
T Consensus 18 ~Mm~~mkIgiIGlG~mG~~~A~~L~~~G~-~V~v~dr~ 54 (358)
T 4e21_A 18 LYFQSMQIGMIGLGRMGADMVRRLRKGGH-ECVVYDLN 54 (358)
T ss_dssp ----CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred hhhcCCEEEEECchHHHHHHHHHHHhCCC-EEEEEeCC
Confidence 34456789999999999999999999999 89999875
No 322
>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A
Probab=93.96 E-value=0.066 Score=48.96 Aligned_cols=36 Identities=14% Similarity=0.331 Sum_probs=31.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
+..+|+|||+|..|.+.|..|++.|+.+|++++.+.
T Consensus 3 ~~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~ 38 (317)
T 2ewd_A 3 ERRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAE 38 (317)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCc
Confidence 456899999999999999999999973499999753
No 323
>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}
Probab=93.92 E-value=0.054 Score=52.41 Aligned_cols=34 Identities=26% Similarity=0.420 Sum_probs=31.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
...+|.|||+|..|...|..|+++|+ +|+++|.+
T Consensus 36 ~~~kV~VIGaG~MG~~iA~~la~~G~-~V~l~D~~ 69 (463)
T 1zcj_A 36 PVSSVGVLGLGTMGRGIAISFARVGI-SVVAVESD 69 (463)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSS
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCC-eEEEEECC
Confidence 34679999999999999999999999 89999975
No 324
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Probab=93.92 E-value=0.046 Score=50.23 Aligned_cols=36 Identities=19% Similarity=0.326 Sum_probs=32.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSR 62 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~ 62 (448)
...+|+|||+|.+|+-+|..|++.|. +|++++++++
T Consensus 172 ~~~~v~vvG~G~~g~e~a~~l~~~g~-~v~~v~~~~~ 207 (338)
T 3itj_A 172 RNKPLAVIGGGDSACEEAQFLTKYGS-KVFMLVRKDH 207 (338)
T ss_dssp TTSEEEEECSSHHHHHHHHHHTTTSS-EEEEECSSSS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCC-EEEEEEcCCc
Confidence 45789999999999999999999999 8999998753
No 325
>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Probab=93.84 E-value=0.061 Score=54.04 Aligned_cols=33 Identities=21% Similarity=0.341 Sum_probs=30.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
..+|+|||||.+|+-+|..|++.|. +|+|+|++
T Consensus 286 ~~~vvViGgG~~g~E~A~~l~~~g~-~Vtlv~~~ 318 (598)
T 2x8g_A 286 PGKTLVIGASYVALECAGFLASLGG-DVTVMVRS 318 (598)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC-EEEEEECC
Confidence 4579999999999999999999999 79999986
No 326
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1
Probab=93.83 E-value=0.064 Score=52.51 Aligned_cols=38 Identities=21% Similarity=0.386 Sum_probs=34.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRVG 64 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~G 64 (448)
...+|+|||||..|+-.|..|++.|. +|+|+|+.+++.
T Consensus 181 ~~~~vvViGgG~ig~E~A~~l~~~g~-~Vtlv~~~~~~l 218 (499)
T 1xdi_A 181 LPDHLIVVGSGVTGAEFVDAYTELGV-PVTVVASQDHVL 218 (499)
T ss_dssp CCSSEEEESCSHHHHHHHHHHHHTTC-CEEEECSSSSSS
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCC-eEEEEEcCCccc
Confidence 35789999999999999999999999 799999987664
No 327
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}
Probab=93.81 E-value=0.042 Score=50.16 Aligned_cols=34 Identities=29% Similarity=0.419 Sum_probs=31.2
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
..+|+|||+|.+|+-.|..|++.|. +|+++++.+
T Consensus 155 ~~~v~viG~G~~g~e~a~~l~~~g~-~V~~i~~~~ 188 (319)
T 3cty_A 155 GKRVVTIGGGNSGAIAAISMSEYVK-NVTIIEYMP 188 (319)
T ss_dssp TSEEEEECCSHHHHHHHHHHTTTBS-EEEEECSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhhCC-cEEEEEcCC
Confidence 4689999999999999999999999 899999864
No 328
>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}
Probab=93.81 E-value=0.058 Score=50.16 Aligned_cols=34 Identities=24% Similarity=0.267 Sum_probs=31.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
+..+|+|||+|.-|.+.|..|++.|+ +|++++++
T Consensus 28 ~~mkI~VIGaG~mG~alA~~La~~G~-~V~l~~r~ 61 (356)
T 3k96_A 28 FKHPIAILGAGSWGTALALVLARKGQ-KVRLWSYE 61 (356)
T ss_dssp CCSCEEEECCSHHHHHHHHHHHTTTC-CEEEECSC
T ss_pred cCCeEEEECccHHHHHHHHHHHHCCC-eEEEEeCC
Confidence 34689999999999999999999999 79999875
No 329
>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}
Probab=93.76 E-value=0.057 Score=49.39 Aligned_cols=34 Identities=32% Similarity=0.436 Sum_probs=29.1
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
....+|+|||+|.-|.+.|..|+++|+ +|+++ ++
T Consensus 17 ~~~~kI~IiGaGa~G~~~a~~L~~~G~-~V~l~-~~ 50 (318)
T 3hwr_A 17 FQGMKVAIMGAGAVGCYYGGMLARAGH-EVILI-AR 50 (318)
T ss_dssp ---CEEEEESCSHHHHHHHHHHHHTTC-EEEEE-CC
T ss_pred ccCCcEEEECcCHHHHHHHHHHHHCCC-eEEEE-Ec
Confidence 356789999999999999999999999 89999 64
No 330
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A
Probab=93.74 E-value=0.052 Score=53.48 Aligned_cols=36 Identities=28% Similarity=0.340 Sum_probs=32.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSR 62 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~ 62 (448)
...+|+|||||.+|+-+|..|++.|. +|+++|+.++
T Consensus 354 ~~k~V~ViGgG~~g~E~A~~L~~~g~-~Vtlv~~~~~ 389 (521)
T 1hyu_A 354 KGKRVAVIGGGNSGVEAAIDLAGIVE-HVTLLEFAPE 389 (521)
T ss_dssp BTSEEEEECCSHHHHHHHHHHHHHBS-EEEEECSSSS
T ss_pred CCCeEEEECCCHHHHHHHHHHHhhCC-EEEEEEeCcc
Confidence 35689999999999999999999999 8999998653
No 331
>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}
Probab=93.71 E-value=0.063 Score=49.51 Aligned_cols=34 Identities=26% Similarity=0.384 Sum_probs=30.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
++.+|.|||+|..|.+.|..|+++|+ +|+++.++
T Consensus 13 ~~~kI~iIG~G~mG~ala~~L~~~G~-~V~~~~r~ 46 (335)
T 1z82_A 13 MEMRFFVLGAGSWGTVFAQMLHENGE-EVILWARR 46 (335)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred cCCcEEEECcCHHHHHHHHHHHhCCC-eEEEEeCC
Confidence 45689999999999999999999999 89999874
No 332
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}
Probab=93.70 E-value=0.067 Score=51.94 Aligned_cols=37 Identities=27% Similarity=0.532 Sum_probs=33.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHHc-CCCcEEEEecCCCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEA-GYKDFIILEASSRV 63 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~-G~~~V~vlE~~~~~ 63 (448)
...+|+|||+|.+|+-+|..|++. |. +|+++|+.+++
T Consensus 158 ~~~~vvViGgG~~g~e~A~~l~~~~g~-~Vtlv~~~~~~ 195 (472)
T 3iwa_A 158 EVSKAVIVGGGFIGLEMAVSLADMWGI-DTTVVELADQI 195 (472)
T ss_dssp SCSEEEEECCSHHHHHHHHHHHHHHCC-EEEEECSSSSS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCC-cEEEEEccCcc
Confidence 357899999999999999999999 99 89999998655
No 333
>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}
Probab=93.68 E-value=0.063 Score=49.19 Aligned_cols=35 Identities=29% Similarity=0.554 Sum_probs=31.7
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
....+|.|||.|..|...|..|+++|+ +|++++++
T Consensus 29 ~~~~~I~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~ 63 (320)
T 4dll_A 29 PYARKITFLGTGSMGLPMARRLCEAGY-ALQVWNRT 63 (320)
T ss_dssp CCCSEEEEECCTTTHHHHHHHHHHTTC-EEEEECSC
T ss_pred cCCCEEEEECccHHHHHHHHHHHhCCC-eEEEEcCC
Confidence 345689999999999999999999999 89999875
No 334
>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}
Probab=93.66 E-value=0.062 Score=48.90 Aligned_cols=32 Identities=25% Similarity=0.331 Sum_probs=29.2
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
+++|+|||+|..|.+.|..|+ +|. +|+++.++
T Consensus 2 ~mkI~IiGaGa~G~~~a~~L~-~g~-~V~~~~r~ 33 (307)
T 3ego_A 2 SLKIGIIGGGSVGLLCAYYLS-LYH-DVTVVTRR 33 (307)
T ss_dssp CCEEEEECCSHHHHHHHHHHH-TTS-EEEEECSC
T ss_pred CCEEEEECCCHHHHHHHHHHh-cCC-ceEEEECC
Confidence 368999999999999999999 999 89999875
No 335
>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}
Probab=93.64 E-value=0.075 Score=46.53 Aligned_cols=35 Identities=20% Similarity=0.280 Sum_probs=31.0
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
....+|.|||+|..|.+.|..|+++|+ +|++++++
T Consensus 17 ~~~~kIgiIG~G~mG~alA~~L~~~G~-~V~~~~r~ 51 (245)
T 3dtt_A 17 FQGMKIAVLGTGTVGRTMAGALADLGH-EVTIGTRD 51 (245)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 446789999999999999999999999 89999875
No 336
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Probab=93.62 E-value=0.072 Score=48.46 Aligned_cols=36 Identities=17% Similarity=0.292 Sum_probs=32.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSR 62 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~ 62 (448)
...+|+|||+|.+|+-+|..|++.|. +|++++++++
T Consensus 153 ~~~~v~vvG~G~~~~e~a~~l~~~g~-~v~~~~~~~~ 188 (323)
T 3f8d_A 153 KNRVVAVIGGGDSALEGAEILSSYST-KVYLIHRRDT 188 (323)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHSS-EEEEECSSSS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhCC-eEEEEEeCCC
Confidence 35789999999999999999999999 8999998753
No 337
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Probab=93.62 E-value=0.087 Score=51.86 Aligned_cols=33 Identities=24% Similarity=0.378 Sum_probs=30.5
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
..+|+|||||.+|+-.|..|++.|. +|+|+|++
T Consensus 210 ~~~vvVIGgG~ig~E~A~~l~~~G~-~Vtlv~~~ 242 (519)
T 3qfa_A 210 PGKTLVVGASYVALECAGFLAGIGL-DVTVMVRS 242 (519)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCC-eEEEEecc
Confidence 4579999999999999999999999 79999985
No 338
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}
Probab=93.52 E-value=0.053 Score=50.45 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=32.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRV 63 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~ 63 (448)
...+|+|||+|.+|+-+|..|++.|. +|+++++++++
T Consensus 162 ~~~~vvVvG~G~~g~e~A~~l~~~g~-~V~lv~~~~~~ 198 (360)
T 3ab1_A 162 KGKRVVIVGGGDSALDWTVGLIKNAA-SVTLVHRGHEF 198 (360)
T ss_dssp TTCEEEEECSSHHHHHHHHHTTTTSS-EEEEECSSSSC
T ss_pred CCCcEEEECCCHHHHHHHHHHHhcCC-EEEEEEcCCCC
Confidence 35689999999999999999999999 89999987543
No 339
>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}
Probab=93.50 E-value=0.075 Score=50.92 Aligned_cols=35 Identities=14% Similarity=0.450 Sum_probs=32.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
...+++|||.|.-|+..|..|+++|+ +|++++.+.
T Consensus 7 ~~~~~~vIGlG~vG~~~A~~La~~G~-~V~~~D~~~ 41 (446)
T 4a7p_A 7 GSVRIAMIGTGYVGLVSGACFSDFGH-EVVCVDKDA 41 (446)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCS
T ss_pred CceEEEEEcCCHHHHHHHHHHHHCCC-EEEEEeCCH
Confidence 35789999999999999999999999 899999854
No 340
>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7
Probab=93.48 E-value=0.12 Score=44.77 Aligned_cols=55 Identities=13% Similarity=0.100 Sum_probs=42.0
Q ss_pred HHHHHHHHhhhcccccccCCCceecCceeEEEEecCCcE-EEEeCCCcEEEeCEEEEeechh
Q 013178 227 SVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKV-TVKTEDGSVYQANYAIVSVSIG 287 (448)
Q Consensus 227 ~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v-~V~~~~g~~~~ad~VI~a~p~~ 287 (448)
.+...|.+.+.+. .|++++ +++|++|..+++++ .|.+.+|.+++||.||+|+...
T Consensus 69 ~~~~~l~~~~~~~-----~gv~i~-~~~v~~i~~~~~~v~~v~~~~g~~i~a~~VV~A~G~~ 124 (232)
T 2cul_A 69 AFHARAKYLLEGL-----RPLHLF-QATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSF 124 (232)
T ss_dssp HHHHHHHHHHHTC-----TTEEEE-ECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTC
T ss_pred HHHHHHHHHHHcC-----CCcEEE-EeEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCC
Confidence 4555566666541 277888 67999999887775 5888888889999999999763
No 341
>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*
Probab=93.36 E-value=0.082 Score=46.43 Aligned_cols=34 Identities=32% Similarity=0.508 Sum_probs=31.1
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
..+|+|||+|-.|..+|..|++.|..+++|++.+
T Consensus 31 ~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d 64 (249)
T 1jw9_B 31 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD 64 (249)
T ss_dssp HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred CCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 4689999999999999999999997679999975
No 342
>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*
Probab=93.32 E-value=0.074 Score=48.66 Aligned_cols=35 Identities=17% Similarity=0.367 Sum_probs=30.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCC-cEEEEecC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYK-DFIILEAS 60 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~-~V~vlE~~ 60 (448)
++++|+|||+|-.|.+.|+.|++.|+- +|++++++
T Consensus 6 ~~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~ 41 (319)
T 1lld_A 6 KPTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIA 41 (319)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 446899999999999999999999862 49999875
No 343
>2h78_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC6014, pseudomonas aeruginosa PA01, PSI-2, structural genomics; HET: PG4; 2.20A {Pseudomonas aeruginosa} PDB: 3cum_A 3obb_A* 3q3c_A*
Probab=93.26 E-value=0.076 Score=48.14 Aligned_cols=33 Identities=24% Similarity=0.400 Sum_probs=30.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
+.+|.|||+|..|...|..|+++|+ +|++++++
T Consensus 3 m~~I~iiG~G~mG~~~a~~l~~~G~-~V~~~d~~ 35 (302)
T 2h78_A 3 MKQIAFIGLGHMGAPMATNLLKAGY-LLNVFDLV 35 (302)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSS
T ss_pred CCEEEEEeecHHHHHHHHHHHhCCC-eEEEEcCC
Confidence 4689999999999999999999999 89999875
No 344
>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}
Probab=93.21 E-value=0.082 Score=47.53 Aligned_cols=33 Identities=24% Similarity=0.384 Sum_probs=30.4
Q ss_pred CcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 28 NSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 28 ~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
.+|.|||.|..|...|..|+++|+ +|++++++.
T Consensus 2 ~~I~iiG~G~mG~~~a~~l~~~G~-~V~~~dr~~ 34 (287)
T 3pdu_A 2 TTYGFLGLGIMGGPMAANLVRAGF-DVTVWNRNP 34 (287)
T ss_dssp CCEEEECCSTTHHHHHHHHHHHTC-CEEEECSSG
T ss_pred CeEEEEccCHHHHHHHHHHHHCCC-eEEEEcCCH
Confidence 479999999999999999999999 799998763
No 345
>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}
Probab=93.19 E-value=0.092 Score=50.93 Aligned_cols=34 Identities=21% Similarity=0.396 Sum_probs=30.9
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
..+|.|||+|..|...|..|+++|+ +|+++|.+.
T Consensus 5 ~~kVgVIGaG~MG~~IA~~la~aG~-~V~l~D~~~ 38 (483)
T 3mog_A 5 VQTVAVIGSGTMGAGIAEVAASHGH-QVLLYDISA 38 (483)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTC-CEEEECSCH
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCC-eEEEEECCH
Confidence 4589999999999999999999999 899999753
No 346
>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*
Probab=93.09 E-value=0.072 Score=51.51 Aligned_cols=36 Identities=19% Similarity=0.326 Sum_probs=30.9
Q ss_pred CCCcEEEECCChHHHHHHHHHH--------------------HcCCCcEEEEecCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLE--------------------EAGYKDFIILEASS 61 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~--------------------~~G~~~V~vlE~~~ 61 (448)
...+|+|||+|.+|+-+|..|+ +.|.++|+|+++++
T Consensus 144 ~~~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~ 199 (460)
T 1cjc_A 144 SCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRG 199 (460)
T ss_dssp TSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSC
T ss_pred CCCEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCC
Confidence 4578999999999999999999 56764699999874
No 347
>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}
Probab=93.06 E-value=0.096 Score=47.07 Aligned_cols=33 Identities=30% Similarity=0.406 Sum_probs=30.4
Q ss_pred CcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 28 NSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 28 ~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
++|.|||.|..|...|..|+++|+ +|++++++.
T Consensus 2 ~~i~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~ 34 (287)
T 3pef_A 2 QKFGFIGLGIMGSAMAKNLVKAGC-SVTIWNRSP 34 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSG
T ss_pred CEEEEEeecHHHHHHHHHHHHCCC-eEEEEcCCH
Confidence 479999999999999999999999 899998763
No 348
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=93.06 E-value=0.099 Score=48.77 Aligned_cols=34 Identities=24% Similarity=0.512 Sum_probs=31.0
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
+++|+|||||..|..+|+.+++.|+ +|++++.+.
T Consensus 1 MK~I~ilGgg~~g~~~~~~Ak~~G~-~vv~vd~~~ 34 (363)
T 4ffl_A 1 MKTICLVGGKLQGFEAAYLSKKAGM-KVVLVDKNP 34 (363)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCT
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCC
Confidence 4689999999999999999999999 899999754
No 349
>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A
Probab=93.05 E-value=0.086 Score=51.06 Aligned_cols=33 Identities=12% Similarity=0.269 Sum_probs=30.1
Q ss_pred CCcEEEECCChHHHHHHHHHHHc--CCCcEEEEecC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEA--GYKDFIILEAS 60 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~--G~~~V~vlE~~ 60 (448)
.++|.|||.|..|+..|..|+++ |+ +|++++++
T Consensus 5 ~mkI~VIG~G~mG~~lA~~La~~g~G~-~V~~~d~~ 39 (467)
T 2q3e_A 5 IKKICCIGAGYVGGPTCSVIAHMCPEI-RVTVVDVN 39 (467)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHHCTTS-EEEEECSC
T ss_pred ccEEEEECCCHHHHHHHHHHHhcCCCC-EEEEEECC
Confidence 46899999999999999999999 78 89999874
No 350
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=93.03 E-value=0.1 Score=49.49 Aligned_cols=35 Identities=26% Similarity=0.448 Sum_probs=31.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
.+..|+|||.|-.|...|..|.+.|+ +|+|+|.+.
T Consensus 3 ~~~~viIiG~Gr~G~~va~~L~~~g~-~vvvId~d~ 37 (413)
T 3l9w_A 3 HGMRVIIAGFGRFGQITGRLLLSSGV-KMVVLDHDP 37 (413)
T ss_dssp -CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEECCH
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC-CEEEEECCH
Confidence 45679999999999999999999999 899999863
No 351
>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*
Probab=93.02 E-value=0.08 Score=50.34 Aligned_cols=34 Identities=15% Similarity=0.298 Sum_probs=30.0
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
...++|+|||+|..|+..|..|++ |+ +|++++.+
T Consensus 34 ~~~mkIaVIGlG~mG~~lA~~La~-G~-~V~~~D~~ 67 (432)
T 3pid_A 34 SEFMKITISGTGYVGLSNGVLIAQ-NH-EVVALDIV 67 (432)
T ss_dssp -CCCEEEEECCSHHHHHHHHHHHT-TS-EEEEECSC
T ss_pred cCCCEEEEECcCHHHHHHHHHHHc-CC-eEEEEecC
Confidence 345689999999999999999998 99 89999975
No 352
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}
Probab=93.01 E-value=0.096 Score=51.02 Aligned_cols=37 Identities=24% Similarity=0.392 Sum_probs=33.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRV 63 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~ 63 (448)
...+|+|||+|.+|+-.|..|++.|. +|+++|+.+++
T Consensus 190 ~~~~v~ViGgG~~g~e~A~~l~~~g~-~Vtli~~~~~~ 226 (484)
T 3o0h_A 190 LPKSIVIVGGGYIGVEFANIFHGLGV-KTTLLHRGDLI 226 (484)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSSS
T ss_pred cCCcEEEECcCHHHHHHHHHHHHcCC-eEEEEECCCcc
Confidence 35789999999999999999999999 89999998755
No 353
>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*
Probab=92.99 E-value=0.12 Score=47.29 Aligned_cols=35 Identities=23% Similarity=0.527 Sum_probs=30.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
...+|+|||||-.|...|+.|+..|+-+|+++|.+
T Consensus 3 ~~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~ 37 (322)
T 1t2d_A 3 PKAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIV 37 (322)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 34689999999999999999999997249999975
No 354
>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}
Probab=92.98 E-value=0.087 Score=47.74 Aligned_cols=35 Identities=14% Similarity=0.265 Sum_probs=31.9
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSR 62 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~ 62 (448)
..+|+|||+|.+|+-+|..|++.|. +|++++++++
T Consensus 147 ~~~v~viG~g~~~~e~a~~l~~~g~-~v~~~~~~~~ 181 (315)
T 3r9u_A 147 NKEVAVLGGGDTALEEALYLANICS-KIYLIHRRDE 181 (315)
T ss_dssp TSEEEEECCBHHHHHHHHHHHTTSS-EEEEECSSSS
T ss_pred cCEEEEECCCHHHHHHHHHHHhhCC-EEEEEEeCCC
Confidence 4689999999999999999999999 8999998753
No 355
>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}
Probab=92.94 E-value=0.12 Score=46.92 Aligned_cols=35 Identities=23% Similarity=0.454 Sum_probs=30.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
+..+|+|||+|..|.+.|+.|++.|+.+|+++|.+
T Consensus 7 ~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~ 41 (315)
T 3tl2_A 7 KRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIP 41 (315)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCG
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence 45689999999999999999999987349999875
No 356
>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}
Probab=92.91 E-value=0.099 Score=50.82 Aligned_cols=33 Identities=18% Similarity=0.307 Sum_probs=29.9
Q ss_pred CCcEEEECCChHHHHHHHHHHHc--CCCcEEEEecC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEA--GYKDFIILEAS 60 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~--G~~~V~vlE~~ 60 (448)
..+|.|||+|..|+..|..|+++ |+ +|++++.+
T Consensus 9 ~mkI~VIG~G~vG~~~A~~La~~g~g~-~V~~~D~~ 43 (481)
T 2o3j_A 9 VSKVVCVGAGYVGGPTCAMIAHKCPHI-TVTVVDMN 43 (481)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHHCTTS-EEEEECSC
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCC-EEEEEECC
Confidence 46899999999999999999999 78 89999863
No 357
>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*
Probab=92.91 E-value=0.081 Score=50.77 Aligned_cols=31 Identities=29% Similarity=0.434 Sum_probs=29.2
Q ss_pred cEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 29 SVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 29 dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
+|+|||+|..|+..|..|+++|+ +|++++++
T Consensus 2 kI~VIG~G~vG~~~A~~la~~G~-~V~~~d~~ 32 (436)
T 1mv8_A 2 RISIFGLGYVGAVCAGCLSARGH-EVIGVDVS 32 (436)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTC-EEEEECSC
T ss_pred EEEEECCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence 69999999999999999999999 89999874
No 358
>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*
Probab=92.78 E-value=0.14 Score=46.78 Aligned_cols=37 Identities=22% Similarity=0.469 Sum_probs=31.3
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHcCCC-cEEEEecC
Q 013178 24 SPPSNSVIIVGAGMSGFMAAKTLEEAGYK-DFIILEAS 60 (448)
Q Consensus 24 ~~~~~dViIIGaGiaGL~aA~~L~~~G~~-~V~vlE~~ 60 (448)
..+..+|+|||+|..|.+.|+.|+..|.- +|+++|.+
T Consensus 3 ~~~~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~ 40 (316)
T 1ldn_A 3 NNGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDAN 40 (316)
T ss_dssp TTTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 34567999999999999999999998742 69999875
No 359
>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6
Probab=92.73 E-value=0.092 Score=48.31 Aligned_cols=30 Identities=30% Similarity=0.376 Sum_probs=28.7
Q ss_pred cEEEECCChHHHHHHHHHHHcCCCcEEEEec
Q 013178 29 SVIIVGAGMSGFMAAKTLEEAGYKDFIILEA 59 (448)
Q Consensus 29 dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~ 59 (448)
+|.|||+|..|.+.|..|+++|+ +|+++++
T Consensus 2 ~I~iiG~G~mG~~~a~~L~~~g~-~V~~~~r 31 (335)
T 1txg_A 2 IVSILGAGAMGSALSVPLVDNGN-EVRIWGT 31 (335)
T ss_dssp EEEEESCCHHHHHHHHHHHHHCC-EEEEECC
T ss_pred EEEEECcCHHHHHHHHHHHhCCC-eEEEEEc
Confidence 69999999999999999999999 8999987
No 360
>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}
Probab=92.72 E-value=0.15 Score=46.50 Aligned_cols=33 Identities=15% Similarity=0.266 Sum_probs=30.5
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
..+|.|||+|..|...|..|++.|+ +|++++++
T Consensus 30 ~~~I~iIG~G~mG~~~a~~l~~~g~-~V~~~~~~ 62 (316)
T 2uyy_A 30 DKKIGFLGLGLMGSGIVSNLLKMGH-TVTVWNRT 62 (316)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred CCeEEEEcccHHHHHHHHHHHhCCC-EEEEEeCC
Confidence 4689999999999999999999999 79999875
No 361
>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}
Probab=92.70 E-value=0.13 Score=47.16 Aligned_cols=36 Identities=22% Similarity=0.310 Sum_probs=31.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
++.+|+|||||..|.+.|+.|++.|+-+|+++|.+.
T Consensus 13 ~~~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~ 48 (328)
T 2hjr_A 13 MRKKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIE 48 (328)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSST
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCH
Confidence 346899999999999999999999972499999763
No 362
>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*
Probab=92.70 E-value=0.11 Score=48.99 Aligned_cols=34 Identities=24% Similarity=0.476 Sum_probs=31.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
...+|+|||+|.+|+.+|..|...|. +|++++.+
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga-~V~v~D~~ 204 (401)
T 1x13_A 171 PPAKVMVIGAGVAGLAAIGAANSLGA-IVRAFDTR 204 (401)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence 35789999999999999999999999 89999875
No 363
>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}
Probab=92.61 E-value=0.048 Score=43.30 Aligned_cols=33 Identities=21% Similarity=0.348 Sum_probs=30.2
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
..+|+|||+|..|...|..|.+.|. +|++++++
T Consensus 21 ~~~v~iiG~G~iG~~~a~~l~~~g~-~v~v~~r~ 53 (144)
T 3oj0_A 21 GNKILLVGNGMLASEIAPYFSYPQY-KVTVAGRN 53 (144)
T ss_dssp CCEEEEECCSHHHHHHGGGCCTTTC-EEEEEESC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCC
Confidence 5689999999999999999999999 69999874
No 364
>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}
Probab=92.55 E-value=0.11 Score=47.02 Aligned_cols=34 Identities=21% Similarity=0.209 Sum_probs=30.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
++.+|.|||+|..|...|..|.+.|+ +|++++++
T Consensus 3 ~~~~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~ 36 (301)
T 3cky_A 3 KSIKIGFIGLGAMGKPMAINLLKEGV-TVYAFDLM 36 (301)
T ss_dssp -CCEEEEECCCTTHHHHHHHHHHTTC-EEEEECSS
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCC-eEEEEeCC
Confidence 34689999999999999999999999 89999874
No 365
>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A
Probab=92.54 E-value=0.13 Score=47.87 Aligned_cols=33 Identities=30% Similarity=0.451 Sum_probs=30.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
..+|+|+|+|.+|+.++..|+..|. +|++++++
T Consensus 167 ~~~VlViGaGgvG~~aa~~a~~~Ga-~V~v~dr~ 199 (361)
T 1pjc_A 167 PGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDIN 199 (361)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCC
Confidence 4789999999999999999999999 89999875
No 366
>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}
Probab=92.48 E-value=0.12 Score=52.90 Aligned_cols=34 Identities=29% Similarity=0.417 Sum_probs=31.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
...+|.|||+|..|...|..|+++|+ +|+++|.+
T Consensus 311 ~~~kV~VIGaG~MG~~iA~~la~aG~-~V~l~D~~ 344 (725)
T 2wtb_A 311 KIKKVAIIGGGLMGSGIATALILSNY-PVILKEVN 344 (725)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHTTTC-CEEEECSS
T ss_pred cCcEEEEEcCCHhhHHHHHHHHhCCC-EEEEEECC
Confidence 34679999999999999999999999 89999975
No 367
>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*
Probab=92.46 E-value=0.13 Score=46.89 Aligned_cols=32 Identities=25% Similarity=0.489 Sum_probs=28.9
Q ss_pred cEEEECCChHHHHHHHHHHHc--CCCcEEEEecCC
Q 013178 29 SVIIVGAGMSGFMAAKTLEEA--GYKDFIILEASS 61 (448)
Q Consensus 29 dViIIGaGiaGL~aA~~L~~~--G~~~V~vlE~~~ 61 (448)
+|+|||+|..|.+.|..|++. |. +|+++|.+.
T Consensus 2 kI~VIGaG~vG~~la~~la~~~~g~-~V~l~D~~~ 35 (310)
T 1guz_A 2 KITVIGAGNVGATTAFRLAEKQLAR-ELVLLDVVE 35 (310)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCS-EEEEECSSS
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCC-EEEEEeCCh
Confidence 799999999999999999996 67 899999863
No 368
>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*
Probab=92.44 E-value=0.081 Score=49.45 Aligned_cols=31 Identities=16% Similarity=0.289 Sum_probs=29.3
Q ss_pred cEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 29 SVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 29 dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
+|.|||+|..|.+.|..|+++|+ +|++++++
T Consensus 17 kI~iIG~G~mG~~la~~L~~~G~-~V~~~~r~ 47 (366)
T 1evy_A 17 KAVVFGSGAFGTALAMVLSKKCR-EVCVWHMN 47 (366)
T ss_dssp EEEEECCSHHHHHHHHHHTTTEE-EEEEECSC
T ss_pred eEEEECCCHHHHHHHHHHHhCCC-EEEEEECC
Confidence 89999999999999999999999 89999874
No 369
>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*
Probab=92.42 E-value=0.13 Score=48.27 Aligned_cols=34 Identities=24% Similarity=0.472 Sum_probs=31.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
...+|+|||+|.+|+.+|..|...|. +|++++.+
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga-~V~~~d~~ 204 (384)
T 1l7d_A 171 PPARVLVFGVGVAGLQAIATAKRLGA-VVMATDVR 204 (384)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 46789999999999999999999999 79999875
No 370
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=92.42 E-value=0.054 Score=52.31 Aligned_cols=33 Identities=30% Similarity=0.437 Sum_probs=30.8
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
.++|+|+|+|-.|...|..|.+.|+ +|+|+|++
T Consensus 3 ~M~iiI~G~G~vG~~la~~L~~~~~-~v~vId~d 35 (461)
T 4g65_A 3 AMKIIILGAGQVGGTLAENLVGENN-DITIVDKD 35 (461)
T ss_dssp CEEEEEECCSHHHHHHHHHTCSTTE-EEEEEESC
T ss_pred cCEEEEECCCHHHHHHHHHHHHCCC-CEEEEECC
Confidence 4579999999999999999999999 89999985
No 371
>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}
Probab=92.42 E-value=0.12 Score=46.99 Aligned_cols=36 Identities=22% Similarity=0.272 Sum_probs=30.1
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
....+|.|||.|..|...|..|+++|+.+|++++++
T Consensus 22 ~~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~ 57 (312)
T 3qsg_A 22 SNAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAA 57 (312)
T ss_dssp ---CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSS
T ss_pred CCCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCC
Confidence 345789999999999999999999998349999875
No 372
>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=92.35 E-value=0.047 Score=47.11 Aligned_cols=34 Identities=29% Similarity=0.321 Sum_probs=30.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
...+|.|||+|..|.+.|..|+++|+ +|+++++.
T Consensus 5 ~~mkI~IIG~G~~G~sLA~~L~~~G~-~V~~~~~~ 38 (232)
T 3dfu_A 5 PRLRVGIFDDGSSTVNMAEKLDSVGH-YVTVLHAP 38 (232)
T ss_dssp CCCEEEEECCSCCCSCHHHHHHHTTC-EEEECSSG
T ss_pred CCcEEEEEeeCHHHHHHHHHHHHCCC-EEEEecCH
Confidence 44689999999999999999999999 89998874
No 373
>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5
Probab=92.35 E-value=0.15 Score=45.46 Aligned_cols=34 Identities=18% Similarity=0.236 Sum_probs=30.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
+...|+|+|+|-+|.++|+.|++.|. +|+|+.++
T Consensus 118 ~~k~vlViGaGg~g~a~a~~L~~~G~-~V~v~~R~ 151 (271)
T 1nyt_A 118 PGLRILLIGAGGASRGVLLPLLSLDC-AVTITNRT 151 (271)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEECC
Confidence 34689999999999999999999998 89999764
No 374
>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*
Probab=92.32 E-value=0.13 Score=46.98 Aligned_cols=33 Identities=33% Similarity=0.391 Sum_probs=29.9
Q ss_pred CCcEEEECCChHHHHHHHHHHHcC----CCcEEEEecC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAG----YKDFIILEAS 60 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G----~~~V~vlE~~ 60 (448)
.++|.|||+|..|.+.|..|.++| + +|++++++
T Consensus 22 ~mkI~iIG~G~mG~ala~~L~~~G~~~~~-~V~v~~r~ 58 (322)
T 2izz_A 22 SMSVGFIGAGQLAFALAKGFTAAGVLAAH-KIMASSPD 58 (322)
T ss_dssp CCCEEEESCSHHHHHHHHHHHHTTSSCGG-GEEEECSC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCcc-eEEEECCC
Confidence 457999999999999999999999 7 79999875
No 375
>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}
Probab=92.28 E-value=0.16 Score=46.76 Aligned_cols=35 Identities=26% Similarity=0.246 Sum_probs=31.2
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
+...+|.|||.|..|-+.|..|.++|+ +|++++++
T Consensus 6 ~~~~kIgIIG~G~mG~slA~~L~~~G~-~V~~~dr~ 40 (341)
T 3ktd_A 6 DISRPVCILGLGLIGGSLLRDLHAANH-SVFGYNRS 40 (341)
T ss_dssp CCSSCEEEECCSHHHHHHHHHHHHTTC-CEEEECSC
T ss_pred CCCCEEEEEeecHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 345679999999999999999999999 79999875
No 376
>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}
Probab=92.21 E-value=0.13 Score=49.65 Aligned_cols=36 Identities=25% Similarity=0.456 Sum_probs=32.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHHc-CC-CcEEEEecCCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEA-GY-KDFIILEASSR 62 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~-G~-~~V~vlE~~~~ 62 (448)
+.++|+|||+|.-|+..|..|+++ |+ + |++++.+..
T Consensus 17 ~~mkIaVIGlG~mG~~lA~~la~~~G~~~-V~~~D~~~~ 54 (478)
T 3g79_A 17 PIKKIGVLGMGYVGIPAAVLFADAPCFEK-VLGFQRNSK 54 (478)
T ss_dssp SCCEEEEECCSTTHHHHHHHHHHSTTCCE-EEEECCCCT
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCCCCe-EEEEECChh
Confidence 446899999999999999999999 98 6 999998755
No 377
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*
Probab=92.21 E-value=0.1 Score=47.67 Aligned_cols=35 Identities=26% Similarity=0.295 Sum_probs=31.9
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSR 62 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~ 62 (448)
..+|+|||+|.+|+-+|..|++.|. +|++++++++
T Consensus 154 ~~~v~vvG~g~~~~e~a~~l~~~~~-~v~~~~~~~~ 188 (332)
T 3lzw_A 154 GRRVAILGGGDSAVDWALMLEPIAK-EVSIIHRRDK 188 (332)
T ss_dssp TCEEEEECSSHHHHHHHHHHTTTBS-EEEEECSSSS
T ss_pred CCEEEEECCCHhHHHHHHHHHhhCC-eEEEEEecCc
Confidence 5789999999999999999999999 8999998753
No 378
>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1
Probab=92.21 E-value=0.14 Score=46.63 Aligned_cols=32 Identities=28% Similarity=0.502 Sum_probs=29.5
Q ss_pred CcEEEECCChHHHHHHHHHHHcC--CCcEEEEecC
Q 013178 28 NSVIIVGAGMSGFMAAKTLEEAG--YKDFIILEAS 60 (448)
Q Consensus 28 ~dViIIGaGiaGL~aA~~L~~~G--~~~V~vlE~~ 60 (448)
.+|+|||+|-.|.+.|..|++.| . +|++++.+
T Consensus 2 ~kI~VIGaG~~G~~la~~L~~~g~~~-~V~l~d~~ 35 (309)
T 1hyh_A 2 RKIGIIGLGNVGAAVAHGLIAQGVAD-DYVFIDAN 35 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCS-EEEEECSS
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCC-EEEEEcCC
Confidence 47999999999999999999999 6 79999975
No 379
>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*
Probab=92.19 E-value=0.17 Score=44.83 Aligned_cols=33 Identities=30% Similarity=0.396 Sum_probs=30.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
..+|+|||+|-+|.++|+.|++.|. +|+|+.++
T Consensus 118 ~k~vlvlGaGGaaraia~~L~~~G~-~v~V~nRt 150 (269)
T 3phh_A 118 YQNALILGAGGSAKALACELKKQGL-QVSVLNRS 150 (269)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 6789999999999999999999997 89999875
No 380
>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*
Probab=92.16 E-value=0.13 Score=46.08 Aligned_cols=35 Identities=26% Similarity=0.450 Sum_probs=32.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
+..+|+|||+|-.|..+|..|+.+|..+++|+|.+
T Consensus 35 ~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D 69 (292)
T 3h8v_A 35 RTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYD 69 (292)
T ss_dssp GGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred hCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 46799999999999999999999998789999975
No 381
>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}
Probab=92.16 E-value=0.12 Score=47.25 Aligned_cols=33 Identities=12% Similarity=0.147 Sum_probs=30.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHcC-CCcEEEEecC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAG-YKDFIILEAS 60 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G-~~~V~vlE~~ 60 (448)
..+|.|||.|..|...|..|+++| + +|++++++
T Consensus 24 ~m~IgvIG~G~mG~~lA~~L~~~G~~-~V~~~dr~ 57 (317)
T 4ezb_A 24 MTTIAFIGFGEAAQSIAGGLGGRNAA-RLAAYDLR 57 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCS-EEEEECGG
T ss_pred CCeEEEECccHHHHHHHHHHHHcCCC-eEEEEeCC
Confidence 468999999999999999999999 9 89999986
No 382
>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}
Probab=92.13 E-value=0.081 Score=45.47 Aligned_cols=33 Identities=27% Similarity=0.292 Sum_probs=29.3
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEE-EecC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFII-LEAS 60 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~v-lE~~ 60 (448)
+.+|.|||+|..|.+.|..|++.|+ +|++ ++++
T Consensus 23 mmkI~IIG~G~mG~~la~~l~~~g~-~V~~v~~r~ 56 (220)
T 4huj_A 23 MTTYAIIGAGAIGSALAERFTAAQI-PAIIANSRG 56 (220)
T ss_dssp SCCEEEEECHHHHHHHHHHHHHTTC-CEEEECTTC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEECCC
Confidence 4689999999999999999999999 7988 6653
No 383
>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1
Probab=92.11 E-value=0.17 Score=46.21 Aligned_cols=35 Identities=26% Similarity=0.415 Sum_probs=30.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCC-cEEEEecC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYK-DFIILEAS 60 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~-~V~vlE~~ 60 (448)
++.+|+|||+|-.|.+.|+.|+..|.- +|+++|.+
T Consensus 6 ~~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~ 41 (318)
T 1y6j_A 6 SRSKVAIIGAGFVGASAAFTMALRQTANELVLIDVF 41 (318)
T ss_dssp -CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 457999999999999999999998863 69999975
No 384
>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}
Probab=92.09 E-value=0.12 Score=48.43 Aligned_cols=33 Identities=12% Similarity=0.131 Sum_probs=30.3
Q ss_pred CcEEEECCChHHHHHHHHHHHcC-------CCcEEEEecCC
Q 013178 28 NSVIIVGAGMSGFMAAKTLEEAG-------YKDFIILEASS 61 (448)
Q Consensus 28 ~dViIIGaGiaGL~aA~~L~~~G-------~~~V~vlE~~~ 61 (448)
.+|.|||+|..|.+.|..|+++| + +|++++++.
T Consensus 22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~-~V~~~~r~~ 61 (375)
T 1yj8_A 22 LKISILGSGNWASAISKVVGTNAKNNYLFEN-EVRMWIRDE 61 (375)
T ss_dssp BCEEEECCSHHHHHHHHHHHHHHHHCTTBCS-CEEEECCSC
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCccCCCCC-eEEEEECCh
Confidence 47999999999999999999999 8 799998864
No 385
>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6
Probab=92.04 E-value=0.16 Score=45.93 Aligned_cols=34 Identities=32% Similarity=0.539 Sum_probs=30.9
Q ss_pred CCcEEEEC-CChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 27 SNSVIIVG-AGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 27 ~~dViIIG-aGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
..+|.||| +|..|.+.|..|++.|+ +|++++++.
T Consensus 21 ~~~I~iIGg~G~mG~~la~~l~~~G~-~V~~~~~~~ 55 (298)
T 2pv7_A 21 IHKIVIVGGYGKLGGLFARYLRASGY-PISILDRED 55 (298)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHTTTC-CEEEECTTC
T ss_pred CCEEEEEcCCCHHHHHHHHHHHhCCC-eEEEEECCc
Confidence 45799999 99999999999999999 799998764
No 386
>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*
Probab=92.03 E-value=0.16 Score=46.24 Aligned_cols=35 Identities=23% Similarity=0.455 Sum_probs=30.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCC-CcEEEEecC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGY-KDFIILEAS 60 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~-~~V~vlE~~ 60 (448)
++.+|+|||||-.|.+.|+.|+..|. .+|+++|.+
T Consensus 5 ~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~ 40 (317)
T 3d0o_A 5 KGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLD 40 (317)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 45799999999999999999999884 279999864
No 387
>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*
Probab=92.01 E-value=0.18 Score=46.00 Aligned_cols=36 Identities=19% Similarity=0.363 Sum_probs=31.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
+..+|+|||+|-.|.+.|+.|+..|+.+|+++|.+.
T Consensus 6 ~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~ 41 (324)
T 3gvi_A 6 ARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAE 41 (324)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred cCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence 456899999999999999999999873499998753
No 388
>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A
Probab=92.00 E-value=0.15 Score=44.68 Aligned_cols=35 Identities=29% Similarity=0.395 Sum_probs=31.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
+..+|+|||+|-.|..+|..|+..|..+++|++.+
T Consensus 27 ~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d 61 (251)
T 1zud_1 27 LDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDD 61 (251)
T ss_dssp HTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCC
T ss_pred hcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 35789999999999999999999998789999875
No 389
>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*
Probab=91.98 E-value=0.32 Score=45.29 Aligned_cols=42 Identities=26% Similarity=0.438 Sum_probs=35.4
Q ss_pred CCCCcEEEECC-ChHHHHHHHHHHHcCCC--cEEEEecCC-CCCce
Q 013178 25 PPSNSVIIVGA-GMSGFMAAKTLEEAGYK--DFIILEASS-RVGGR 66 (448)
Q Consensus 25 ~~~~dViIIGa-GiaGL~aA~~L~~~G~~--~V~vlE~~~-~~GGr 66 (448)
....+|+|||| |.+|+.|+..+...|.. +|+++|.+. .-||+
T Consensus 212 ~~~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~~~~g~~ 257 (394)
T 2qrj_A 212 ARKPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKETSRGGP 257 (394)
T ss_dssp CCCCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHHHTTCSC
T ss_pred CCCCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeeccccccCCc
Confidence 35789999999 99999999999999972 499999865 44665
No 390
>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*
Probab=91.88 E-value=0.18 Score=46.16 Aligned_cols=35 Identities=20% Similarity=0.450 Sum_probs=32.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
+..+|+|||+|-.|..+|..|+..|..+++|++.+
T Consensus 33 ~~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D 67 (340)
T 3rui_A 33 KNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNG 67 (340)
T ss_dssp HTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred hCCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Confidence 47899999999999999999999998789999875
No 391
>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*
Probab=91.87 E-value=0.11 Score=49.21 Aligned_cols=30 Identities=17% Similarity=0.324 Sum_probs=28.2
Q ss_pred cEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 29 SVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 29 dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
+|.|||+|..|+..|..|++ |+ +|++++++
T Consensus 2 kI~VIG~G~vG~~~A~~La~-G~-~V~~~d~~ 31 (402)
T 1dlj_A 2 KIAVAGSGYVGLSLGVLLSL-QN-EVTIVDIL 31 (402)
T ss_dssp EEEEECCSHHHHHHHHHHTT-TS-EEEEECSC
T ss_pred EEEEECCCHHHHHHHHHHhC-CC-EEEEEECC
Confidence 69999999999999999999 99 89999875
No 392
>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}
Probab=91.85 E-value=0.18 Score=47.15 Aligned_cols=34 Identities=35% Similarity=0.468 Sum_probs=31.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
....|+|+|+|..|+.+|..|+..|. +|++++++
T Consensus 165 ~~~~V~ViGaG~iG~~~a~~l~~~Ga-~V~~~d~~ 198 (369)
T 2eez_A 165 APASVVILGGGTVGTNAAKIALGMGA-QVTILDVN 198 (369)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEECC
Confidence 34789999999999999999999999 89999875
No 393
>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}
Probab=91.83 E-value=0.11 Score=47.27 Aligned_cols=31 Identities=16% Similarity=0.189 Sum_probs=28.9
Q ss_pred CcEEEECCChHHHHHHHHHHHc-----C-CCcEEEEec
Q 013178 28 NSVIIVGAGMSGFMAAKTLEEA-----G-YKDFIILEA 59 (448)
Q Consensus 28 ~dViIIGaGiaGL~aA~~L~~~-----G-~~~V~vlE~ 59 (448)
++|.|||+|..|.+.|..|+++ | + +|+++++
T Consensus 9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~-~V~~~~r 45 (317)
T 2qyt_A 9 IKIAVFGLGGVGGYYGAMLALRAAATDGLL-EVSWIAR 45 (317)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHTTSSE-EEEEECC
T ss_pred CEEEEECcCHHHHHHHHHHHhCccccCCCC-CEEEEEc
Confidence 5899999999999999999999 9 9 8999975
No 394
>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*
Probab=91.79 E-value=0.16 Score=43.25 Aligned_cols=31 Identities=23% Similarity=0.294 Sum_probs=28.8
Q ss_pred cEEEEC-CChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 29 SVIIVG-AGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 29 dViIIG-aGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
+|+||| +|..|...|..|.+.|+ +|++++++
T Consensus 2 ~i~iiGa~G~~G~~ia~~l~~~g~-~V~~~~r~ 33 (212)
T 1jay_A 2 RVALLGGTGNLGKGLALRLATLGH-EIVVGSRR 33 (212)
T ss_dssp EEEEETTTSHHHHHHHHHHHTTTC-EEEEEESS
T ss_pred eEEEEcCCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 699999 99999999999999999 89999874
No 395
>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A
Probab=91.72 E-value=0.18 Score=48.76 Aligned_cols=35 Identities=9% Similarity=0.274 Sum_probs=31.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
.+.+|.|||.|..|...|..|+++|+ +|++++++.
T Consensus 3 ~~~kIgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~ 37 (484)
T 4gwg_A 3 AQADIALIGLAVMGQNLILNMNDHGF-VVCAFNRTV 37 (484)
T ss_dssp CCBSEEEECCSHHHHHHHHHHHHTTC-CEEEECSST
T ss_pred CCCEEEEEChhHHHHHHHHHHHHCCC-EEEEEeCCH
Confidence 34689999999999999999999999 799999854
No 396
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Probab=91.66 E-value=0.2 Score=44.98 Aligned_cols=33 Identities=21% Similarity=0.424 Sum_probs=30.2
Q ss_pred CCcEEEECC-ChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 27 SNSVIIVGA-GMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 27 ~~dViIIGa-GiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
+.+|.|||+ |..|.+.|..|.+.|+ +|++++++
T Consensus 11 mm~I~iIG~tG~mG~~la~~l~~~g~-~V~~~~r~ 44 (286)
T 3c24_A 11 PKTVAILGAGGKMGARITRKIHDSAH-HLAAIEIA 44 (286)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHSSS-EEEEECCS
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCC-EEEEEECC
Confidence 358999999 9999999999999999 89999864
No 397
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=91.65 E-value=0.16 Score=49.01 Aligned_cols=34 Identities=26% Similarity=0.312 Sum_probs=31.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
+...|+|||||-+|...|..|.+.|. +|+|++.+
T Consensus 11 ~~~~vlVvGgG~va~~k~~~L~~~ga-~V~vi~~~ 44 (457)
T 1pjq_A 11 RDRDCLIVGGGDVAERKARLLLEAGA-RLTVNALT 44 (457)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTTB-EEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCcC-EEEEEcCC
Confidence 35689999999999999999999999 89999974
No 398
>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*
Probab=91.59 E-value=0.17 Score=51.77 Aligned_cols=34 Identities=18% Similarity=0.260 Sum_probs=31.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
+..+|.|||+|..|...|..|+++|+ +|+++|.+
T Consensus 313 ~i~kV~VIGaG~MG~~iA~~la~aG~-~V~l~D~~ 346 (715)
T 1wdk_A 313 DVKQAAVLGAGIMGGGIAYQSASKGT-PILMKDIN 346 (715)
T ss_dssp CCSSEEEECCHHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred cCCEEEEECCChhhHHHHHHHHhCCC-EEEEEECC
Confidence 35579999999999999999999999 89999975
No 399
>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*
Probab=91.57 E-value=0.15 Score=45.42 Aligned_cols=34 Identities=24% Similarity=0.349 Sum_probs=30.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
+...|+|+|+|-+|.+.|+.|++.|. +|+|+.++
T Consensus 118 ~~~~vlvlGaGg~g~a~a~~L~~~G~-~v~v~~R~ 151 (272)
T 1p77_A 118 PNQHVLILGAGGATKGVLLPLLQAQQ-NIVLANRT 151 (272)
T ss_dssp TTCEEEEECCSHHHHTTHHHHHHTTC-EEEEEESS
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence 34689999999999999999999998 89999875
No 400
>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6
Probab=91.53 E-value=0.16 Score=45.83 Aligned_cols=32 Identities=28% Similarity=0.499 Sum_probs=29.8
Q ss_pred CcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 28 NSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 28 ~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
.+|.|||+|..|...|..|.+.|+ +|.+++++
T Consensus 6 m~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~ 37 (299)
T 1vpd_A 6 MKVGFIGLGIMGKPMSKNLLKAGY-SLVVSDRN 37 (299)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTC-EEEEECSC
T ss_pred ceEEEECchHHHHHHHHHHHhCCC-EEEEEeCC
Confidence 589999999999999999999999 89999874
No 401
>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}
Probab=91.51 E-value=0.22 Score=43.95 Aligned_cols=35 Identities=17% Similarity=0.233 Sum_probs=31.0
Q ss_pred CCcEEEECCChHHHHHHHHHHHcC----CCcEEEEecCCC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAG----YKDFIILEASSR 62 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G----~~~V~vlE~~~~ 62 (448)
+.+|.|||+|..|.+.|..|+++| + +|++++++..
T Consensus 4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~-~v~~~~~~~~ 42 (262)
T 2rcy_A 4 NIKLGFMGLGQMGSALAHGIANANIIKKE-NLFYYGPSKK 42 (262)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHHTSSCGG-GEEEECSSCC
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCCCCC-eEEEEeCCcc
Confidence 358999999999999999999999 7 7999988643
No 402
>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}
Probab=91.47 E-value=0.18 Score=45.49 Aligned_cols=35 Identities=11% Similarity=0.149 Sum_probs=30.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
...+|+|||+|-+|.++|+.|.+.|.++|+|+.++
T Consensus 140 ~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~ 174 (297)
T 2egg_A 140 DGKRILVIGAGGGARGIYFSLLSTAAERIDMANRT 174 (297)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSS
T ss_pred CCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 34689999999999999999999997469999774
No 403
>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*
Probab=91.43 E-value=0.19 Score=44.38 Aligned_cols=31 Identities=26% Similarity=0.381 Sum_probs=28.8
Q ss_pred cEEEECCChHHHHHHHHHHHcC-CCcEEEEecC
Q 013178 29 SVIIVGAGMSGFMAAKTLEEAG-YKDFIILEAS 60 (448)
Q Consensus 29 dViIIGaGiaGL~aA~~L~~~G-~~~V~vlE~~ 60 (448)
+|.|||+|..|.+.|..|++.| + +|++++++
T Consensus 2 ~i~iiG~G~mG~~~a~~l~~~g~~-~v~~~~r~ 33 (263)
T 1yqg_A 2 NVYFLGGGNMAAAVAGGLVKQGGY-RIYIANRG 33 (263)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCSC-EEEEECSS
T ss_pred EEEEECchHHHHHHHHHHHHCCCC-eEEEECCC
Confidence 6999999999999999999999 9 89999874
No 404
>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*
Probab=91.42 E-value=0.15 Score=49.23 Aligned_cols=36 Identities=17% Similarity=0.392 Sum_probs=30.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHHc--------------------CCCcEEEEecCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEA--------------------GYKDFIILEASS 61 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~--------------------G~~~V~vlE~~~ 61 (448)
...+|+|||+|.+|+-+|..|++. |.++|+|+++++
T Consensus 146 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~ 201 (456)
T 1lqt_A 146 SGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRG 201 (456)
T ss_dssp CSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCC
Confidence 457899999999999999999974 533799999875
No 405
>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*
Probab=91.39 E-value=0.11 Score=48.12 Aligned_cols=34 Identities=24% Similarity=0.207 Sum_probs=30.7
Q ss_pred CcEEEECCChHHHHHHHHHHHcC-------CCcEEEEecCCC
Q 013178 28 NSVIIVGAGMSGFMAAKTLEEAG-------YKDFIILEASSR 62 (448)
Q Consensus 28 ~dViIIGaGiaGL~aA~~L~~~G-------~~~V~vlE~~~~ 62 (448)
++|+|||+|..|.+.|..|+++| + +|++++++..
T Consensus 9 mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~-~V~~~~r~~~ 49 (354)
T 1x0v_A 9 KKVCIVGSGNWGSAIAKIVGGNAAQLAQFDP-RVTMWVFEED 49 (354)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHCTTEEE-EEEEECCCCB
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCcccCCCC-eEEEEEcChh
Confidence 48999999999999999999999 8 8999988643
No 406
>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}
Probab=91.37 E-value=0.18 Score=45.73 Aligned_cols=32 Identities=28% Similarity=0.426 Sum_probs=28.8
Q ss_pred cEEEECCChHHHHHHHHHHHcCCC-cEEEEecC
Q 013178 29 SVIIVGAGMSGFMAAKTLEEAGYK-DFIILEAS 60 (448)
Q Consensus 29 dViIIGaGiaGL~aA~~L~~~G~~-~V~vlE~~ 60 (448)
+|+|||||..|.+.|+.|+..|+- +|+++|.+
T Consensus 2 kI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~ 34 (304)
T 2v6b_A 2 KVGVVGTGFVGSTAAFALVLRGSCSELVLVDRD 34 (304)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 799999999999999999999862 59999875
No 407
>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}
Probab=91.33 E-value=0.26 Score=43.27 Aligned_cols=34 Identities=26% Similarity=0.414 Sum_probs=30.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
.. +|+|||+|-+|.++++.|.+.|.++|+|+.++
T Consensus 108 ~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~ 141 (253)
T 3u62_A 108 KE-PVVVVGAGGAARAVIYALLQMGVKDIWVVNRT 141 (253)
T ss_dssp CS-SEEEECCSHHHHHHHHHHHHTTCCCEEEEESC
T ss_pred CC-eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 45 89999999999999999999997569999875
No 408
>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}
Probab=91.30 E-value=0.22 Score=48.44 Aligned_cols=35 Identities=11% Similarity=0.177 Sum_probs=31.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
+..+|.|||.|..|...|..|+++|+ +|++++++.
T Consensus 9 ~~~~IgvIGlG~MG~~lA~~La~~G~-~V~v~dr~~ 43 (497)
T 2p4q_A 9 MSADFGLIGLAVMGQNLILNAADHGF-TVCAYNRTQ 43 (497)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred CCCCEEEEeeHHHHHHHHHHHHHCCC-EEEEEeCCH
Confidence 34689999999999999999999999 799998753
No 409
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*
Probab=91.29 E-value=0.22 Score=45.32 Aligned_cols=34 Identities=32% Similarity=0.511 Sum_probs=29.8
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCC-cEEEEecC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYK-DFIILEAS 60 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~-~V~vlE~~ 60 (448)
..+|.|||.|..|.+.|..|++.|+. +|++++++
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~ 67 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDIN 67 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECC
Confidence 46899999999999999999999983 48888764
No 410
>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*
Probab=91.29 E-value=0.22 Score=46.63 Aligned_cols=34 Identities=26% Similarity=0.562 Sum_probs=31.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
....|+|||+|..|+.+|..|+..|. +|++++++
T Consensus 167 ~g~~V~ViG~G~iG~~~a~~a~~~Ga-~V~~~d~~ 200 (377)
T 2vhw_A 167 EPADVVVIGAGTAGYNAARIANGMGA-TVTVLDIN 200 (377)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCC
Confidence 46789999999999999999999999 89999874
No 411
>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6
Probab=91.27 E-value=0.2 Score=44.66 Aligned_cols=31 Identities=26% Similarity=0.325 Sum_probs=28.8
Q ss_pred cEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 29 SVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 29 dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
+|.|||+|..|.+.|..|.+.|+ +|++++++
T Consensus 2 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~ 32 (279)
T 2f1k_A 2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQ 32 (279)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred EEEEEcCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence 69999999999999999999999 89999864
No 412
>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*
Probab=91.25 E-value=0.16 Score=49.21 Aligned_cols=34 Identities=26% Similarity=0.404 Sum_probs=30.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
.+.+|.|||+|..|.+.|..|+++|+ +|++++++
T Consensus 14 ~~~~IgvIGlG~MG~~lA~~La~~G~-~V~v~~r~ 47 (480)
T 2zyd_A 14 SKQQIGVVGMAVMGRNLALNIESRGY-TVSIFNRS 47 (480)
T ss_dssp -CBSEEEECCSHHHHHHHHHHHTTTC-CEEEECSS
T ss_pred CCCeEEEEccHHHHHHHHHHHHhCCC-eEEEEeCC
Confidence 45689999999999999999999999 79999875
No 413
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Probab=91.19 E-value=0.19 Score=51.74 Aligned_cols=35 Identities=20% Similarity=0.229 Sum_probs=31.9
Q ss_pred CCCcEEEEC--CChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 26 PSNSVIIVG--AGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 26 ~~~dViIIG--aGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
...+|+||| ||.+|+-+|..|++.|. +|+|+|+.+
T Consensus 527 ~gk~VvVIG~GgG~~g~e~A~~l~~~G~-~Vtlv~~~~ 563 (729)
T 1o94_A 527 IGKRVVILNADTYFMAPSLAEKLATAGH-EVTIVSGVH 563 (729)
T ss_dssp CCSEEEEEECCCSSHHHHHHHHHHHTTC-EEEEEESSC
T ss_pred CCCeEEEEcCCCCchHHHHHHHHHHcCC-EEEEEeccc
Confidence 356899999 99999999999999999 899999875
No 414
>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}
Probab=91.04 E-value=0.24 Score=44.12 Aligned_cols=36 Identities=17% Similarity=0.263 Sum_probs=31.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
....+|+|||+|-+|.++|+.|.+.|.++|+|+.++
T Consensus 120 ~~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt 155 (282)
T 3fbt_A 120 IKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRN 155 (282)
T ss_dssp CTTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESC
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 346789999999999999999999998579999764
No 415
>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*
Probab=91.04 E-value=0.27 Score=44.95 Aligned_cols=36 Identities=25% Similarity=0.475 Sum_probs=30.9
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCC-cEEEEecC
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYK-DFIILEAS 60 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~-~V~vlE~~ 60 (448)
....+|+|||+|..|.+.|+.|+..|.- +|+++|.+
T Consensus 3 ~~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~ 39 (326)
T 3pqe_A 3 KHVNKVALIGAGFVGSSYAFALINQGITDELVVIDVN 39 (326)
T ss_dssp CSCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecc
Confidence 3457899999999999999999999863 69999864
No 416
>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*
Probab=90.98 E-value=0.22 Score=44.80 Aligned_cols=31 Identities=35% Similarity=0.478 Sum_probs=29.1
Q ss_pred cEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 29 SVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 29 dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
+|.|||+|..|...|..|.+.|+ +|++++++
T Consensus 2 ~i~iiG~G~mG~~~a~~l~~~g~-~V~~~~~~ 32 (296)
T 2gf2_A 2 PVGFIGLGNMGNPMAKNLMKHGY-PLIIYDVF 32 (296)
T ss_dssp CEEEECCSTTHHHHHHHHHHTTC-CEEEECSS
T ss_pred eEEEEeccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 69999999999999999999999 79999875
No 417
>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*
Probab=90.94 E-value=0.26 Score=44.75 Aligned_cols=33 Identities=27% Similarity=0.476 Sum_probs=29.2
Q ss_pred CcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 28 NSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 28 ~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
.+|+|||||-.|...|+.|+..|.-+|+++|.+
T Consensus 3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~ 35 (309)
T 1ur5_A 3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIV 35 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCC
Confidence 589999999999999999999995149999975
No 418
>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...
Probab=90.89 E-value=0.26 Score=45.08 Aligned_cols=41 Identities=17% Similarity=0.400 Sum_probs=32.3
Q ss_pred CCCCCCCCCcEEEECCChHHHHHHHHHHHcCCC-cEEEEecC
Q 013178 20 IAPTSPPSNSVIIVGAGMSGFMAAKTLEEAGYK-DFIILEAS 60 (448)
Q Consensus 20 ~~~~~~~~~dViIIGaGiaGL~aA~~L~~~G~~-~V~vlE~~ 60 (448)
+.+......+|+|||+|-.|.+.|+.|+..|.- +++++|.+
T Consensus 12 ~~~~~~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~ 53 (331)
T 4aj2_A 12 LKEEQVPQNKITVVGVGAVGMACAISILMKDLADELALVDVI 53 (331)
T ss_dssp CC---CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred cccccCCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCC
Confidence 333445678999999999999999999998863 69999864
No 419
>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A
Probab=90.88 E-value=0.27 Score=43.89 Aligned_cols=36 Identities=28% Similarity=0.350 Sum_probs=31.1
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
.+...|+|+|+|-+|.++|+.|++.|.++|+|+.++
T Consensus 125 l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~ 160 (283)
T 3jyo_A 125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLD 160 (283)
T ss_dssp CCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECC
Confidence 346789999999999999999999998459998764
No 420
>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}
Probab=90.84 E-value=0.18 Score=45.52 Aligned_cols=33 Identities=27% Similarity=0.533 Sum_probs=27.9
Q ss_pred CcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 28 NSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 28 ~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
.+|.+||-|..|...|..|.++|+ +|++++++.
T Consensus 6 ~kIgfIGLG~MG~~mA~~L~~~G~-~V~v~dr~~ 38 (297)
T 4gbj_A 6 EKIAFLGLGNLGTPIAEILLEAGY-ELVVWNRTA 38 (297)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTC-EEEEC----
T ss_pred CcEEEEecHHHHHHHHHHHHHCCC-eEEEEeCCH
Confidence 479999999999999999999999 899998753
No 421
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Probab=90.81 E-value=0.22 Score=49.21 Aligned_cols=35 Identities=14% Similarity=0.421 Sum_probs=32.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
...+|+|||+|.+|+-.|..|++.|. +|+++++++
T Consensus 185 ~gk~V~VIG~G~sg~e~a~~l~~~~~-~vtv~~r~~ 219 (542)
T 1w4x_A 185 SGQRVGVIGTGSSGIQVSPQIAKQAA-ELFVFQRTP 219 (542)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHHBS-EEEEEESSC
T ss_pred CCCEEEEECCCccHHHHHHHHhhcCc-eEEEEEcCC
Confidence 46789999999999999999999998 899999864
No 422
>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}
Probab=90.78 E-value=0.28 Score=43.51 Aligned_cols=36 Identities=22% Similarity=0.273 Sum_probs=31.0
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
.....++|+|+|-+|.++|+.|++.|.++|+|+.++
T Consensus 118 l~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~ 153 (272)
T 3pwz_A 118 LRNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRD 153 (272)
T ss_dssp CTTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred ccCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 356789999999999999999999995479998764
No 423
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*
Probab=90.77 E-value=0.12 Score=54.83 Aligned_cols=36 Identities=14% Similarity=0.271 Sum_probs=32.9
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCCC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSRV 63 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~~ 63 (448)
..+|+|||+|..|+-+|..|++.|. +|+|+|+++++
T Consensus 284 gk~vvViGgG~~g~E~A~~L~~~G~-~Vtvv~~~~~~ 319 (965)
T 2gag_A 284 GARIAVATTNDSAYELVRELAATGG-VVAVIDARSSI 319 (965)
T ss_dssp CSSEEEEESSTTHHHHHHHHGGGTC-CSEEEESCSSC
T ss_pred CCeEEEEcCCHHHHHHHHHHHHcCC-cEEEEECCCcc
Confidence 4689999999999999999999999 79999998765
No 424
>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A
Probab=90.77 E-value=0.23 Score=44.22 Aligned_cols=33 Identities=18% Similarity=0.352 Sum_probs=30.5
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
..+|+|||+|-.|.+.|+.|.+.|. +|++++++
T Consensus 129 ~~~v~iiGaG~~g~aia~~L~~~g~-~V~v~~r~ 161 (275)
T 2hk9_A 129 EKSILVLGAGGASRAVIYALVKEGA-KVFLWNRT 161 (275)
T ss_dssp GSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSS
T ss_pred CCEEEEECchHHHHHHHHHHHHcCC-EEEEEECC
Confidence 4689999999999999999999999 89999875
No 425
>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A
Probab=90.72 E-value=0.27 Score=45.57 Aligned_cols=34 Identities=24% Similarity=0.476 Sum_probs=31.5
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
..+|+|||+|-.|..+|..|+.+|..+++|++.+
T Consensus 118 ~~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D 151 (353)
T 3h5n_A 118 NAKVVILGCGGIGNHVSVILATSGIGEIILIDND 151 (353)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTCSEEEEEECC
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCeEEEECCC
Confidence 6789999999999999999999998789999975
No 426
>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*
Probab=90.69 E-value=0.17 Score=44.99 Aligned_cols=35 Identities=17% Similarity=0.189 Sum_probs=31.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
...+|+|||+|-+|.++|+.|.+.|.++|+|+.++
T Consensus 116 ~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~ 150 (277)
T 3don_A 116 EDAYILILGAGGASKGIANELYKIVRPTLTVANRT 150 (277)
T ss_dssp GGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSC
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 45789999999999999999999998569999775
No 427
>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*
Probab=90.69 E-value=0.3 Score=44.31 Aligned_cols=35 Identities=20% Similarity=0.238 Sum_probs=31.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
+...|+|+|+|-+|.++|+.|++.|.++|+|+.++
T Consensus 153 ~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~ 187 (315)
T 3tnl_A 153 IGKKMTICGAGGAATAICIQAALDGVKEISIFNRK 187 (315)
T ss_dssp TTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECS
T ss_pred cCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECC
Confidence 45789999999999999999999998569998775
No 428
>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1
Probab=90.67 E-value=0.39 Score=43.78 Aligned_cols=35 Identities=14% Similarity=0.289 Sum_probs=30.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCC-cEEEEecC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYK-DFIILEAS 60 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~-~V~vlE~~ 60 (448)
...+|+|||+|..|.++|+.|+..|.- +|+++|.+
T Consensus 20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~ 55 (330)
T 3ldh_A 20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVM 55 (330)
T ss_dssp CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECC
Confidence 567999999999999999999999862 69999864
No 429
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=90.66 E-value=0.21 Score=44.52 Aligned_cols=34 Identities=15% Similarity=0.353 Sum_probs=30.8
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
+++|+|+|||..|...+..|.+.|+ +|+++.++.
T Consensus 5 ~~~ilVtGaG~iG~~l~~~L~~~g~-~V~~~~r~~ 38 (286)
T 3ius_A 5 TGTLLSFGHGYTARVLSRALAPQGW-RIIGTSRNP 38 (286)
T ss_dssp CCEEEEETCCHHHHHHHHHHGGGTC-EEEEEESCG
T ss_pred cCcEEEECCcHHHHHHHHHHHHCCC-EEEEEEcCh
Confidence 4689999999999999999999999 899998753
No 430
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}
Probab=90.57 E-value=0.33 Score=43.28 Aligned_cols=34 Identities=26% Similarity=0.400 Sum_probs=30.8
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
+++|+|.|+|..|...+..|.+.|+ +|+++.++.
T Consensus 3 ~~~ilVtGaG~iG~~l~~~L~~~g~-~V~~~~r~~ 36 (286)
T 3gpi_A 3 LSKILIAGCGDLGLELARRLTAQGH-EVTGLRRSA 36 (286)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTC-CEEEEECTT
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence 3579999999999999999999999 799998753
No 431
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}
Probab=90.56 E-value=0.29 Score=44.21 Aligned_cols=35 Identities=23% Similarity=0.356 Sum_probs=31.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
-....|.|||+|-.|..+|..|...|. +|++++++
T Consensus 155 l~g~~v~IiG~G~iG~~~a~~l~~~G~-~V~~~d~~ 189 (300)
T 2rir_A 155 IHGSQVAVLGLGRTGMTIARTFAALGA-NVKVGARS 189 (300)
T ss_dssp STTSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHCCC-EEEEEECC
Confidence 345789999999999999999999999 89999975
No 432
>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5
Probab=90.53 E-value=0.29 Score=43.41 Aligned_cols=34 Identities=18% Similarity=0.377 Sum_probs=30.3
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
..+|+|||+|-+|-++|+.|.+.|.++|+|+.++
T Consensus 119 ~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt 152 (271)
T 1npy_A 119 NAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARN 152 (271)
T ss_dssp TSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSC
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 4689999999999999999999997569999764
No 433
>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*
Probab=90.49 E-value=0.27 Score=46.69 Aligned_cols=33 Identities=30% Similarity=0.592 Sum_probs=30.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCC--CcEEEEe
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGY--KDFIILE 58 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~--~~V~vlE 58 (448)
+..+|+|+|||-+|.++|+.|.+.|. ++|+|++
T Consensus 185 ~~~rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd 219 (439)
T 2dvm_A 185 SEITLALFGAGAAGFATLRILTEAGVKPENVRVVE 219 (439)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEE
T ss_pred cCCEEEEECccHHHHHHHHHHHHcCCCcCeEEEEE
Confidence 45789999999999999999999997 5899998
No 434
>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*
Probab=90.41 E-value=0.22 Score=44.63 Aligned_cols=31 Identities=19% Similarity=0.429 Sum_probs=28.5
Q ss_pred CcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 28 NSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 28 ~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
.+|.|||+|..|...|..|.+ |+ +|++++++
T Consensus 2 ~~i~iiG~G~~G~~~a~~l~~-g~-~V~~~~~~ 32 (289)
T 2cvz_A 2 EKVAFIGLGAMGYPMAGHLAR-RF-PTLVWNRT 32 (289)
T ss_dssp CCEEEECCSTTHHHHHHHHHT-TS-CEEEECSS
T ss_pred CeEEEEcccHHHHHHHHHHhC-CC-eEEEEeCC
Confidence 479999999999999999999 99 79999875
No 435
>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*
Probab=90.38 E-value=0.34 Score=43.89 Aligned_cols=36 Identities=14% Similarity=0.287 Sum_probs=31.5
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
....+++|+|+|-+|.++|+.|++.|.++|+|+.++
T Consensus 146 l~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt 181 (312)
T 3t4e_A 146 MRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRK 181 (312)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECS
T ss_pred cCCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 346789999999999999999999998569998775
No 436
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}
Probab=90.38 E-value=0.32 Score=43.80 Aligned_cols=35 Identities=17% Similarity=0.270 Sum_probs=31.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
-....|.|||+|-.|..+|..|+..|. +|++++++
T Consensus 153 l~g~~v~IiG~G~iG~~~a~~l~~~G~-~V~~~dr~ 187 (293)
T 3d4o_A 153 IHGANVAVLGLGRVGMSVARKFAALGA-KVKVGARE 187 (293)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEECC
Confidence 345789999999999999999999999 89999875
No 437
>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*
Probab=90.37 E-value=0.27 Score=47.76 Aligned_cols=32 Identities=9% Similarity=0.305 Sum_probs=30.0
Q ss_pred CcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 28 NSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 28 ~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
.+|.|||+|..|...|..|+++|+ +|++++++
T Consensus 3 m~IgvIG~G~mG~~lA~~La~~G~-~V~v~dr~ 34 (482)
T 2pgd_A 3 ADIALIGLAVMGQNLILNMNDHGF-VVCAFNRT 34 (482)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred CeEEEEChHHHHHHHHHHHHHCCC-eEEEEeCC
Confidence 479999999999999999999999 79999875
No 438
>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*
Probab=90.37 E-value=0.14 Score=48.59 Aligned_cols=30 Identities=17% Similarity=0.269 Sum_probs=27.9
Q ss_pred CcEEEECCChHHHHHHHHHHH-cCCCcEEEEe
Q 013178 28 NSVIIVGAGMSGFMAAKTLEE-AGYKDFIILE 58 (448)
Q Consensus 28 ~dViIIGaGiaGL~aA~~L~~-~G~~~V~vlE 58 (448)
++|+|||+|..|.+.|..|++ .|+ +|++++
T Consensus 3 mkI~ViGaG~~G~~~a~~La~~~G~-~V~~~~ 33 (404)
T 3c7a_A 3 VKVCVCGGGNGAHTLSGLAASRDGV-EVRVLT 33 (404)
T ss_dssp EEEEEECCSHHHHHHHHHHTTSTTE-EEEEEC
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCC-EEEEEe
Confidence 479999999999999999998 599 899998
No 439
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=90.34 E-value=0.23 Score=53.12 Aligned_cols=35 Identities=23% Similarity=0.402 Sum_probs=31.2
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
..+|+|||||.+|+-+|..|.+.|.++|+|+++++
T Consensus 332 ~~~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~ 366 (1025)
T 1gte_A 332 RGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG 366 (1025)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred CCcEEEECCChHHHHHHHHHHHcCCCEEEEEEecC
Confidence 34899999999999999999999953699999876
No 440
>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}
Probab=90.33 E-value=0.25 Score=43.64 Aligned_cols=33 Identities=21% Similarity=0.415 Sum_probs=29.5
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCc-EEEEecC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKD-FIILEAS 60 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~-V~vlE~~ 60 (448)
+.+|.|||+|..|...|..|++.|+ + |.+++++
T Consensus 10 ~m~i~iiG~G~mG~~~a~~l~~~g~-~~v~~~~~~ 43 (266)
T 3d1l_A 10 DTPIVLIGAGNLATNLAKALYRKGF-RIVQVYSRT 43 (266)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHHTC-CEEEEECSS
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCCC-eEEEEEeCC
Confidence 3589999999999999999999999 7 8888764
No 441
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*
Probab=90.16 E-value=0.33 Score=45.97 Aligned_cols=50 Identities=18% Similarity=0.203 Sum_probs=38.8
Q ss_pred HHHHHHHHhhhcccccccCCCceecCceeEEEEecCCcEEEEeCCCcEEEeCEEEEeech
Q 013178 227 SVVHSVAKQFLSHRHQVIRDPRLKLNKVVRNISYSKDKVTVKTEDGSVYQANYAIVSVSI 286 (448)
Q Consensus 227 ~l~~~l~~~l~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~V~~~~g~~~~ad~VI~a~p~ 286 (448)
.+.+.+.+.+.+ .|++++++++|++|+.++ |.+++|+++.+|.||++++.
T Consensus 219 ~~~~~~~~~l~~------~gV~~~~~~~v~~i~~~~----v~~~~g~~~~~D~vi~a~G~ 268 (409)
T 3h8l_A 219 NSRKAVASIYNQ------LGIKLVHNFKIKEIREHE----IVDEKGNTIPADITILLPPY 268 (409)
T ss_dssp HHHHHHHHHHHH------HTCEEECSCCEEEECSSE----EEETTSCEEECSEEEEECCE
T ss_pred HHHHHHHHHHHH------CCCEEEcCCceEEECCCe----EEECCCCEEeeeEEEECCCC
Confidence 445555555544 599999999999997542 67788989999999999873
No 442
>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*
Probab=90.02 E-value=0.25 Score=47.02 Aligned_cols=32 Identities=19% Similarity=0.413 Sum_probs=29.8
Q ss_pred CcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 28 NSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 28 ~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
.+..|||.|.-|+..|..|+++|+ +|++++.+
T Consensus 12 ~~~~ViGlGyvGlp~A~~La~~G~-~V~~~D~~ 43 (431)
T 3ojo_A 12 SKLTVVGLGYIGLPTSIMFAKHGV-DVLGVDIN 43 (431)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTC-EEEEECSC
T ss_pred CccEEEeeCHHHHHHHHHHHHCCC-EEEEEECC
Confidence 478999999999999999999999 89999974
No 443
>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*
Probab=90.01 E-value=0.32 Score=43.35 Aligned_cols=35 Identities=14% Similarity=0.246 Sum_probs=30.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
....++|||+|-+|.+.|+.|++.|.++|+|+.++
T Consensus 125 ~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~ 159 (281)
T 3o8q_A 125 KGATILLIGAGGAARGVLKPLLDQQPASITVTNRT 159 (281)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESS
T ss_pred cCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECC
Confidence 46789999999999999999999995479999774
No 444
>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A
Probab=89.94 E-value=0.25 Score=43.52 Aligned_cols=33 Identities=24% Similarity=0.300 Sum_probs=29.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
+++|.|||+|..|...|..|.+.|. +|.+++++
T Consensus 3 ~m~i~iiG~G~mG~~~a~~l~~~g~-~v~~~~~~ 35 (259)
T 2ahr_A 3 AMKIGIIGVGKMASAIIKGLKQTPH-ELIISGSS 35 (259)
T ss_dssp CCEEEEECCSHHHHHHHHHHTTSSC-EEEEECSS
T ss_pred ccEEEEECCCHHHHHHHHHHHhCCC-eEEEECCC
Confidence 3589999999999999999999998 79999864
No 445
>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6
Probab=89.84 E-value=0.29 Score=47.45 Aligned_cols=32 Identities=25% Similarity=0.439 Sum_probs=29.7
Q ss_pred CcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 28 NSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 28 ~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
++|.|||+|..|...|..|+++|+ +|++++++
T Consensus 2 MkIgVIG~G~mG~~lA~~La~~G~-~V~v~dr~ 33 (478)
T 1pgj_A 2 MDVGVVGLGVMGANLALNIAEKGF-KVAVFNRT 33 (478)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred CEEEEEChHHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 379999999999999999999999 79999874
No 446
>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*
Probab=89.83 E-value=0.32 Score=49.72 Aligned_cols=35 Identities=26% Similarity=0.406 Sum_probs=31.8
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
.+-.+|.|||||..|-.-|+.++.+|+ +|+++|.+
T Consensus 314 ~~i~~v~ViGaG~MG~gIA~~~a~aG~-~V~l~D~~ 348 (742)
T 3zwc_A 314 QPVSSVGVLGLGTMGRGIAISFARVGI-SVVAVESD 348 (742)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSS
T ss_pred ccccEEEEEcccHHHHHHHHHHHhCCC-chhcccch
Confidence 345789999999999999999999999 89999975
No 447
>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6
Probab=89.78 E-value=0.36 Score=44.41 Aligned_cols=33 Identities=30% Similarity=0.426 Sum_probs=29.8
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
..+|.|||+|..|.+.|..|++.|+ +|++++++
T Consensus 16 ~~~I~IIG~G~mG~alA~~L~~~G~-~V~~~~~~ 48 (338)
T 1np3_A 16 GKKVAIIGYGSQGHAHACNLKDSGV-DVTVGLRS 48 (338)
T ss_dssp TSCEEEECCSHHHHHHHHHHHHTTC-CEEEECCT
T ss_pred CCEEEEECchHHHHHHHHHHHHCcC-EEEEEECC
Confidence 3579999999999999999999999 79998865
No 448
>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1
Probab=89.73 E-value=0.29 Score=44.67 Aligned_cols=32 Identities=25% Similarity=0.465 Sum_probs=28.5
Q ss_pred cEEEECCChHHHHHHHHHHHcCCC-cEEEEecC
Q 013178 29 SVIIVGAGMSGFMAAKTLEEAGYK-DFIILEAS 60 (448)
Q Consensus 29 dViIIGaGiaGL~aA~~L~~~G~~-~V~vlE~~ 60 (448)
+|+|||+|-.|.+.|..|++.|+. +|++++.+
T Consensus 2 kI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~ 34 (319)
T 1a5z_A 2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVD 34 (319)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCC
Confidence 699999999999999999999862 49999875
No 449
>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}
Probab=89.72 E-value=0.2 Score=45.04 Aligned_cols=30 Identities=23% Similarity=0.307 Sum_probs=28.4
Q ss_pred CcEEEECCChHHHHHHHHHHHcCCCcEEEEe
Q 013178 28 NSVIIVGAGMSGFMAAKTLEEAGYKDFIILE 58 (448)
Q Consensus 28 ~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE 58 (448)
.+|.|||+|..|...|..|.+.|+ +|++++
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~ 33 (295)
T 1yb4_A 4 MKLGFIGLGIMGSPMAINLARAGH-QLHVTT 33 (295)
T ss_dssp CEEEECCCSTTHHHHHHHHHHTTC-EEEECC
T ss_pred CEEEEEccCHHHHHHHHHHHhCCC-EEEEEc
Confidence 579999999999999999999999 899998
No 450
>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1
Probab=89.72 E-value=0.33 Score=44.19 Aligned_cols=36 Identities=28% Similarity=0.568 Sum_probs=30.7
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCC-cEEEEecC
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYK-DFIILEAS 60 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~-~V~vlE~~ 60 (448)
.++.+|+|||||-.|.+.|+.|...+.- +++++|.+
T Consensus 3 ~~~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~ 39 (318)
T 1ez4_A 3 PNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVV 39 (318)
T ss_dssp TTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred CCCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCC
Confidence 4557999999999999999999998753 69999863
No 451
>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*
Probab=89.72 E-value=0.39 Score=43.78 Aligned_cols=36 Identities=25% Similarity=0.304 Sum_probs=31.0
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCC-cEEEEecC
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYK-DFIILEAS 60 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~-~V~vlE~~ 60 (448)
....+|+|||+|..|.++|+.|+..|.- +++++|.+
T Consensus 7 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~ 43 (326)
T 3vku_A 7 KDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIF 43 (326)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCC
Confidence 4457899999999999999999999873 69999864
No 452
>3tum_A Shikimate dehydrogenase family protein; rossmann-fold NAD(P)(+)-binding site, shikimate dehydrogenas substrate binding domain, oxidoreductase; HET: NAD; 2.15A {Pseudomonas putida}
Probab=89.71 E-value=0.45 Score=42.09 Aligned_cols=36 Identities=28% Similarity=0.494 Sum_probs=31.3
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
.+..+++|+|||=++.++++.|.+.|.++|+|+.++
T Consensus 123 ~~~~~~lilGaGGaarai~~aL~~~g~~~i~i~nRt 158 (269)
T 3tum_A 123 PAGKRALVIGCGGVGSAIAYALAEAGIASITLCDPS 158 (269)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred cccCeEEEEecHHHHHHHHHHHHHhCCCeEEEeCCC
Confidence 356789999999999999999999997678998653
No 453
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=89.69 E-value=0.26 Score=42.20 Aligned_cols=33 Identities=15% Similarity=0.386 Sum_probs=30.2
Q ss_pred CCcEEEECC-ChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 27 SNSVIIVGA-GMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 27 ~~dViIIGa-GiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
+++|+|+|| |..|...+..|.+.|+ +|+++.++
T Consensus 4 m~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~ 37 (227)
T 3dhn_A 4 VKKIVLIGASGFVGSALLNEALNRGF-EVTAVVRH 37 (227)
T ss_dssp CCEEEEETCCHHHHHHHHHHHHTTTC-EEEEECSC
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCC-EEEEEEcC
Confidence 468999996 9999999999999999 89999875
No 454
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}
Probab=89.66 E-value=0.22 Score=44.58 Aligned_cols=34 Identities=12% Similarity=0.136 Sum_probs=30.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
...+|+|||+|.+|+-+|..|++.| +|++++++.
T Consensus 140 ~~~~v~vvG~G~~~~e~a~~l~~~g--~v~~v~~~~ 173 (297)
T 3fbs_A 140 DQGKIGVIAASPMAIHHALMLPDWG--ETTFFTNGI 173 (297)
T ss_dssp TTCEEEEECCSTTHHHHHHHGGGTS--EEEEECTTT
T ss_pred cCCEEEEEecCccHHHHHHHhhhcC--cEEEEECCC
Confidence 3578999999999999999999998 599998753
No 455
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=89.51 E-value=0.41 Score=41.29 Aligned_cols=34 Identities=21% Similarity=0.304 Sum_probs=30.6
Q ss_pred CCCcEEEECC-ChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 26 PSNSVIIVGA-GMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 26 ~~~dViIIGa-GiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
+.+.|+|.|| |-.|...|..|.+.|+ +|+++.++
T Consensus 20 ~~~~ilVtGatG~iG~~l~~~L~~~G~-~V~~~~R~ 54 (236)
T 3e8x_A 20 QGMRVLVVGANGKVARYLLSELKNKGH-EPVAMVRN 54 (236)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred CCCeEEEECCCChHHHHHHHHHHhCCC-eEEEEECC
Confidence 4578999998 9999999999999999 89999875
No 456
>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}
Probab=89.46 E-value=0.45 Score=43.32 Aligned_cols=35 Identities=20% Similarity=0.278 Sum_probs=30.1
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
..+|+|||+|..|.+.|+.|+..|..+|+++|.+.
T Consensus 5 ~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~ 39 (321)
T 3p7m_A 5 RKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQ 39 (321)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCh
Confidence 46899999999999999999998863499998753
No 457
>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}
Probab=89.41 E-value=0.38 Score=44.23 Aligned_cols=34 Identities=26% Similarity=0.359 Sum_probs=29.7
Q ss_pred CCcEEEECC-ChHHHHHHHHHHHcCCC-cEEEEecC
Q 013178 27 SNSVIIVGA-GMSGFMAAKTLEEAGYK-DFIILEAS 60 (448)
Q Consensus 27 ~~dViIIGa-GiaGL~aA~~L~~~G~~-~V~vlE~~ 60 (448)
..+|+|||+ |-.|.++|+.|...|.. +|+++|..
T Consensus 8 ~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~ 43 (343)
T 3fi9_A 8 EEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPF 43 (343)
T ss_dssp SSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSC
T ss_pred CCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 468999998 99999999999999852 79999864
No 458
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}
Probab=89.38 E-value=0.38 Score=43.56 Aligned_cols=35 Identities=23% Similarity=0.414 Sum_probs=31.2
Q ss_pred CCCcEEEECC-ChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 26 PSNSVIIVGA-GMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 26 ~~~dViIIGa-GiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
+++.|+|.|| |..|...+..|.+.|+ +|+++.++.
T Consensus 6 ~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~ 41 (321)
T 3vps_A 6 LKHRILITGGAGFIGGHLARALVASGE-EVTVLDDLR 41 (321)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTC-CEEEECCCS
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCC-EEEEEecCC
Confidence 4678999999 9999999999999999 799998754
No 459
>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A
Probab=89.30 E-value=0.58 Score=42.79 Aligned_cols=39 Identities=26% Similarity=0.342 Sum_probs=32.9
Q ss_pred CCCCCCCCcEEEECC-ChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 21 APTSPPSNSVIIVGA-GMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 21 ~~~~~~~~dViIIGa-GiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
++...+...|+|.|| |..|...+..|.+.|+ +|+++.++
T Consensus 5 ~~~~~~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~ 44 (342)
T 1y1p_A 5 NAVLPEGSLVLVTGANGFVASHVVEQLLEHGY-KVRGTARS 44 (342)
T ss_dssp TCSSCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred cccCCCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 334455678999998 9999999999999999 89999764
No 460
>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}
Probab=89.28 E-value=0.44 Score=41.59 Aligned_cols=33 Identities=12% Similarity=0.242 Sum_probs=28.9
Q ss_pred CcEEEECCChHHHHHHHHHHHcCC---CcEEEEecC
Q 013178 28 NSVIIVGAGMSGFMAAKTLEEAGY---KDFIILEAS 60 (448)
Q Consensus 28 ~dViIIGaGiaGL~aA~~L~~~G~---~~V~vlE~~ 60 (448)
.+|.|||+|..|.+.|..|.++|+ .+|.+++++
T Consensus 3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~ 38 (247)
T 3gt0_A 3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLN 38 (247)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSC
T ss_pred CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCC
Confidence 579999999999999999999996 158888764
No 461
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=89.26 E-value=0.43 Score=40.47 Aligned_cols=31 Identities=19% Similarity=0.317 Sum_probs=28.5
Q ss_pred cEEEECC-ChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 29 SVIIVGA-GMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 29 dViIIGa-GiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
+|+|+|| |..|...+..|.+.|+ +|+++.++
T Consensus 2 kvlVtGatG~iG~~l~~~L~~~g~-~V~~~~R~ 33 (221)
T 3ew7_A 2 KIGIIGATGRAGSRILEEAKNRGH-EVTAIVRN 33 (221)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred eEEEEcCCchhHHHHHHHHHhCCC-EEEEEEcC
Confidence 6999996 9999999999999999 89999875
No 462
>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*
Probab=89.25 E-value=0.43 Score=42.10 Aligned_cols=31 Identities=29% Similarity=0.497 Sum_probs=29.3
Q ss_pred cEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 29 SVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 29 dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
+|+|||+|-.|.+.|+.|.+.|. +|++++++
T Consensus 118 ~v~iiG~G~~g~~~a~~l~~~g~-~v~v~~r~ 148 (263)
T 2d5c_A 118 PALVLGAGGAGRAVAFALREAGL-EVWVWNRT 148 (263)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred eEEEECCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence 89999999999999999999999 79999875
No 463
>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A
Probab=89.22 E-value=0.38 Score=47.41 Aligned_cols=35 Identities=20% Similarity=0.450 Sum_probs=32.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
+..+|+|||+|-.|..+|..|+..|..+++|+|.+
T Consensus 325 ~~arVLIVGaGGLGs~vA~~La~aGVG~ItLvD~D 359 (615)
T 4gsl_A 325 KNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNG 359 (615)
T ss_dssp HTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred hCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 46799999999999999999999998889999975
No 464
>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*
Probab=89.12 E-value=0.41 Score=45.99 Aligned_cols=34 Identities=26% Similarity=0.388 Sum_probs=31.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
....|+|+|+|-.|.++|..|+..|. +|++.|.+
T Consensus 264 ~GKtVvVtGaGgIG~aiA~~Laa~GA-~Viv~D~~ 297 (488)
T 3ond_A 264 AGKVAVVAGYGDVGKGCAAALKQAGA-RVIVTEID 297 (488)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred cCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence 45789999999999999999999999 89999874
No 465
>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*
Probab=89.11 E-value=0.41 Score=44.19 Aligned_cols=35 Identities=31% Similarity=0.376 Sum_probs=31.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
...+|+|||+|-.|..+|..|+..|.++++|+|.+
T Consensus 35 ~~~~VlivG~GGlG~~ia~~La~~Gvg~itlvD~d 69 (346)
T 1y8q_A 35 RASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHE 69 (346)
T ss_dssp HTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred hCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 35789999999999999999999999889999864
No 466
>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*
Probab=89.07 E-value=0.41 Score=46.37 Aligned_cols=33 Identities=24% Similarity=0.352 Sum_probs=30.5
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
+.+|.|||+|..|...|..|+++|+ +|++++++
T Consensus 5 ~~~IgvIG~G~mG~~lA~~L~~~G~-~V~v~dr~ 37 (474)
T 2iz1_A 5 QANFGVVGMAVMGKNLALNVESRGY-TVAIYNRT 37 (474)
T ss_dssp TBSEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred CCcEEEEeeHHHHHHHHHHHHhCCC-EEEEEcCC
Confidence 3689999999999999999999999 79999874
No 467
>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A
Probab=89.05 E-value=0.34 Score=47.71 Aligned_cols=35 Identities=20% Similarity=0.450 Sum_probs=32.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
+..+|+|||+|-.|..+|..|+..|..+++|+|.+
T Consensus 326 ~~~kVLIVGaGGLGs~va~~La~aGVG~ItLvD~D 360 (598)
T 3vh1_A 326 KNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNG 360 (598)
T ss_dssp HTCEEEEECCSHHHHHHHHHHHTTTCCEEEEECCS
T ss_pred hCCeEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 46799999999999999999999998789999864
No 468
>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6
Probab=89.05 E-value=0.31 Score=42.99 Aligned_cols=30 Identities=20% Similarity=0.213 Sum_probs=27.5
Q ss_pred cEEEECCChHHHHHHHHHHHcCCCcEEEEec
Q 013178 29 SVIIVGAGMSGFMAAKTLEEAGYKDFIILEA 59 (448)
Q Consensus 29 dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~ 59 (448)
+|.|||+|..|...|..|++.|+ +|+++++
T Consensus 2 ~I~iIG~G~mG~~la~~l~~~g~-~V~~~~~ 31 (264)
T 1i36_A 2 RVGFIGFGEVAQTLASRLRSRGV-EVVTSLE 31 (264)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTC-EEEECCT
T ss_pred eEEEEechHHHHHHHHHHHHCCC-eEEEeCC
Confidence 69999999999999999999999 7998754
No 469
>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A
Probab=89.00 E-value=0.43 Score=43.07 Aligned_cols=36 Identities=22% Similarity=0.480 Sum_probs=30.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCC-cEEEEecCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYK-DFIILEASS 61 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~-~V~vlE~~~ 61 (448)
+..+|+|||||..|...|+.|+..|.- +|+|+|.+.
T Consensus 13 ~~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~ 49 (303)
T 2i6t_A 13 TVNKITVVGGGELGIACTLAISAKGIADRLVLLDLSE 49 (303)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence 347899999999999999999998863 599999864
No 470
>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*
Probab=88.88 E-value=0.24 Score=46.74 Aligned_cols=37 Identities=27% Similarity=0.445 Sum_probs=32.3
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCC-cEEEEecCCCC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYK-DFIILEASSRV 63 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~-~V~vlE~~~~~ 63 (448)
.++|+|||||.+|++||.+|++.+.+ +|+|+|+++..
T Consensus 2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~ 39 (401)
T 3vrd_B 2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETY 39 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSE
T ss_pred cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCC
Confidence 36899999999999999999998754 79999998653
No 471
>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1
Probab=88.87 E-value=0.45 Score=39.75 Aligned_cols=36 Identities=22% Similarity=0.281 Sum_probs=30.6
Q ss_pred CCCCCcEEEEC-CChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 24 SPPSNSVIIVG-AGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 24 ~~~~~dViIIG-aGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
..+...|+|+| +|-.|++++..++..|. +|++++++
T Consensus 36 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~ 72 (198)
T 1pqw_A 36 LSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGS 72 (198)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESS
T ss_pred CCCCCEEEEeeCCChHHHHHHHHHHHcCC-EEEEEeCC
Confidence 34556799999 59999999999999999 79999864
No 472
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=88.82 E-value=0.47 Score=40.42 Aligned_cols=31 Identities=16% Similarity=0.348 Sum_probs=28.7
Q ss_pred cEEEECC-ChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 29 SVIIVGA-GMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 29 dViIIGa-GiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
+|+|+|| |..|...+..|.+.|+ +|+++.++
T Consensus 2 kilVtGatG~iG~~l~~~L~~~g~-~V~~~~R~ 33 (224)
T 3h2s_A 2 KIAVLGATGRAGSAIVAEARRRGH-EVLAVVRD 33 (224)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCC-EEEEEEec
Confidence 5999998 9999999999999999 89999764
No 473
>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A
Probab=88.75 E-value=0.45 Score=42.61 Aligned_cols=33 Identities=21% Similarity=0.365 Sum_probs=28.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHc--CCCcEEEEecC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEA--GYKDFIILEAS 60 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~--G~~~V~vlE~~ 60 (448)
..+|.|||+|..|.+.|..|++. |. +|++++++
T Consensus 6 ~~~I~iIG~G~mG~~~a~~l~~~g~~~-~V~~~d~~ 40 (290)
T 3b1f_A 6 EKTIYIAGLGLIGASLALGIKRDHPHY-KIVGYNRS 40 (290)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTS-EEEEECSS
T ss_pred cceEEEEeeCHHHHHHHHHHHhCCCCc-EEEEEcCC
Confidence 35899999999999999999998 56 78888764
No 474
>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*
Probab=88.66 E-value=0.45 Score=42.71 Aligned_cols=33 Identities=21% Similarity=0.129 Sum_probs=29.0
Q ss_pred CcEEEECCChHHHHHHHHHHHcCCC-cEEEEecC
Q 013178 28 NSVIIVGAGMSGFMAAKTLEEAGYK-DFIILEAS 60 (448)
Q Consensus 28 ~dViIIGaGiaGL~aA~~L~~~G~~-~V~vlE~~ 60 (448)
++|+|||+|-.|.+.|+.|++.|.- +|+++|.+
T Consensus 1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~ 34 (294)
T 1oju_A 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIA 34 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSS
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECC
Confidence 3799999999999999999999863 59999875
No 475
>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica}
Probab=88.62 E-value=0.36 Score=45.53 Aligned_cols=37 Identities=19% Similarity=0.381 Sum_probs=32.8
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCC--CcEEEEecCC
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGY--KDFIILEASS 61 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~--~~V~vlE~~~ 61 (448)
-...+|+|.|||-||+.+|..|.+.|. ++|.++|+..
T Consensus 217 l~d~riV~~GAGaAGigia~ll~~~G~~~~~i~l~D~~G 255 (487)
T 3nv9_A 217 IHECRMVFIGAGSSNTTCLRLIVTAGADPKKIVMFDSKG 255 (487)
T ss_dssp GGGCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEETTE
T ss_pred hhhcEEEEECCCHHHHHHHHHHHHcCCCcccEEEEeccc
Confidence 356899999999999999999999998 4899999863
No 476
>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*
Probab=88.60 E-value=0.43 Score=42.77 Aligned_cols=33 Identities=21% Similarity=0.129 Sum_probs=28.9
Q ss_pred CcEEEECCChHHHHHHHHHHHcCCC-cEEEEecC
Q 013178 28 NSVIIVGAGMSGFMAAKTLEEAGYK-DFIILEAS 60 (448)
Q Consensus 28 ~dViIIGaGiaGL~aA~~L~~~G~~-~V~vlE~~ 60 (448)
++|+|||+|-.|-++|+.|...+.- +++|+|-.
T Consensus 1 MKV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~ 34 (294)
T 2x0j_A 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIA 34 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 4799999999999999999988763 79999864
No 477
>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*
Probab=88.59 E-value=0.43 Score=43.07 Aligned_cols=33 Identities=24% Similarity=0.400 Sum_probs=30.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
+.+|.+||=|..|...|.+|.++|+ +|++++++
T Consensus 3 M~kIgfIGlG~MG~~mA~~L~~~G~-~v~v~dr~ 35 (300)
T 3obb_A 3 MKQIAFIGLGHMGAPMATNLLKAGY-LLNVFDLV 35 (300)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSS
T ss_pred cCEEEEeeehHHHHHHHHHHHhCCC-eEEEEcCC
Confidence 4689999999999999999999999 89999875
No 478
>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}
Probab=88.57 E-value=0.48 Score=42.95 Aligned_cols=34 Identities=18% Similarity=0.389 Sum_probs=29.5
Q ss_pred CcEEEECCChHHHHHHHHHHHcCCC-cEEEEecCC
Q 013178 28 NSVIIVGAGMSGFMAAKTLEEAGYK-DFIILEASS 61 (448)
Q Consensus 28 ~dViIIGaGiaGL~aA~~L~~~G~~-~V~vlE~~~ 61 (448)
++|+|||+|..|.+.|+.|+..|.- +++++|.+.
T Consensus 1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~ 35 (314)
T 3nep_X 1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKD 35 (314)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSST
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCch
Confidence 3799999999999999999998862 699998753
No 479
>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*
Probab=88.56 E-value=0.51 Score=44.90 Aligned_cols=35 Identities=23% Similarity=0.490 Sum_probs=32.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
...+|+|||+|-.|..+|..|+.+|..+++|+|.+
T Consensus 39 ~~~~VlvvG~GGlGs~va~~La~aGvg~i~ivD~D 73 (434)
T 1tt5_B 39 DTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMD 73 (434)
T ss_dssp HTCCEEEECSSTHHHHHHHHHHHTTCCCEEEEECC
T ss_pred cCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 46789999999999999999999998789999864
No 480
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}
Probab=88.53 E-value=0.34 Score=44.51 Aligned_cols=33 Identities=18% Similarity=0.258 Sum_probs=29.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
...+|+|||+|.+|+-+|..|++.| +|++++++
T Consensus 162 ~~~~v~VvG~G~~g~e~a~~l~~~~--~v~~v~~~ 194 (357)
T 4a9w_A 162 AGMRVAIIGGGNSGAQILAEVSTVA--ETTWITQH 194 (357)
T ss_dssp TTSEEEEECCSHHHHHHHHHHTTTS--EEEEECSS
T ss_pred CCCEEEEECCCcCHHHHHHHHHhhC--CEEEEECC
Confidence 4578999999999999999999998 49999876
No 481
>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*
Probab=88.48 E-value=0.38 Score=43.53 Aligned_cols=35 Identities=14% Similarity=0.196 Sum_probs=30.3
Q ss_pred CCCCcEEEECCC-hHHHHHHHHHHHcCCCcEEEEecC
Q 013178 25 PPSNSVIIVGAG-MSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 25 ~~~~dViIIGaG-iaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
-...+|+|||+| +.|..+|..|...|. +|+|.+++
T Consensus 175 l~gk~vvVIG~G~iVG~~~A~~L~~~gA-tVtv~nR~ 210 (320)
T 1edz_A 175 LYGKKCIVINRSEIVGRPLAALLANDGA-TVYSVDVN 210 (320)
T ss_dssp TTTCEEEEECCCTTTHHHHHHHHHTTSC-EEEEECSS
T ss_pred CCCCEEEEECCCcchHHHHHHHHHHCCC-EEEEEeCc
Confidence 457899999999 679999999999999 79988653
No 482
>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}
Probab=88.45 E-value=0.5 Score=42.78 Aligned_cols=32 Identities=31% Similarity=0.611 Sum_probs=28.5
Q ss_pred cEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 29 SVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 29 dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
+|+|||||-.|.+.|+.|+..|..+|+++|.+
T Consensus 1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~ 32 (308)
T 2d4a_B 1 MITILGAGKVGMATAVMLMMRGYDDLLLIART 32 (308)
T ss_dssp CEEEECCSHHHHHHHHHHHHHTCSCEEEECSS
T ss_pred CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCC
Confidence 58999999999999999999887349999975
No 483
>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*
Probab=88.45 E-value=0.53 Score=42.97 Aligned_cols=36 Identities=25% Similarity=0.304 Sum_probs=30.5
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCC-cEEEEecC
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYK-DFIILEAS 60 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~-~V~vlE~~ 60 (448)
.++.+|+|||||-.|.+.|+.|+..+.- +++++|.+
T Consensus 7 ~~~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~ 43 (326)
T 2zqz_A 7 KDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIF 43 (326)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCC
Confidence 4457999999999999999999998753 69999863
No 484
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=88.36 E-value=0.34 Score=47.21 Aligned_cols=36 Identities=22% Similarity=0.334 Sum_probs=30.8
Q ss_pred CCCCcEEEECCChHHHH-HHHHHHHcCCCcEEEEecCC
Q 013178 25 PPSNSVIIVGAGMSGFM-AAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~-aA~~L~~~G~~~V~vlE~~~ 61 (448)
....+|.|||.|-+|++ +|..|.+.|+ +|++.|.+.
T Consensus 20 ~~~~~v~viGiG~sG~s~~A~~l~~~G~-~V~~~D~~~ 56 (494)
T 4hv4_A 20 RRVRHIHFVGIGGAGMGGIAEVLANEGY-QISGSDLAP 56 (494)
T ss_dssp --CCEEEEETTTSTTHHHHHHHHHHTTC-EEEEECSSC
T ss_pred ccCCEEEEEEEcHhhHHHHHHHHHhCCC-eEEEEECCC
Confidence 34578999999999997 6999999999 899999754
No 485
>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*
Probab=88.17 E-value=0.49 Score=45.82 Aligned_cols=36 Identities=19% Similarity=0.331 Sum_probs=31.4
Q ss_pred CCCCcEEEECCChHHHH-HHHHHHHcCCCcEEEEecCC
Q 013178 25 PPSNSVIIVGAGMSGFM-AAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~-aA~~L~~~G~~~V~vlE~~~ 61 (448)
....+|.|||.|-+|++ +|..|.+.|+ +|.+.|...
T Consensus 16 ~~~~~i~viG~G~sG~s~~A~~l~~~G~-~V~~~D~~~ 52 (475)
T 1p3d_A 16 RRVQQIHFIGIGGAGMSGIAEILLNEGY-QISGSDIAD 52 (475)
T ss_dssp TTCCEEEEETTTSTTHHHHHHHHHHHTC-EEEEEESCC
T ss_pred ccCCEEEEEeecHHHHHHHHHHHHhCCC-EEEEECCCC
Confidence 34567999999999998 8999999999 899999854
No 486
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Probab=88.13 E-value=0.66 Score=38.75 Aligned_cols=32 Identities=28% Similarity=0.554 Sum_probs=29.7
Q ss_pred CcEEEECC-ChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 28 NSVIIVGA-GMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 28 ~dViIIGa-GiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
+.|+|+|| |..|...+..|.+.|+ +|+++.++
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~~~g~-~V~~~~r~ 36 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAVQAGY-EVTVLVRD 36 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCC-eEEEEEeC
Confidence 57999999 9999999999999999 89999875
No 487
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=88.13 E-value=0.84 Score=42.68 Aligned_cols=36 Identities=28% Similarity=0.532 Sum_probs=32.2
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
.+...|.|||+|-.|...|..+++.|+ +|++++...
T Consensus 10 ~~~~~IlIlG~G~lg~~la~aa~~lG~-~viv~d~~~ 45 (377)
T 3orq_A 10 KFGATIGIIGGGQLGKMMAQSAQKMGY-KVVVLDPSE 45 (377)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCT
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECCC
Confidence 356789999999999999999999999 899998754
No 488
>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6
Probab=88.02 E-value=0.48 Score=42.20 Aligned_cols=33 Identities=33% Similarity=0.540 Sum_probs=28.3
Q ss_pred CcEEEECCChHHHHHHHHHHHcCCC-cEEEEecC
Q 013178 28 NSVIIVGAGMSGFMAAKTLEEAGYK-DFIILEAS 60 (448)
Q Consensus 28 ~dViIIGaGiaGL~aA~~L~~~G~~-~V~vlE~~ 60 (448)
.+|.|||+|..|.+.|..|++.|+. +|++++++
T Consensus 2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~ 35 (281)
T 2g5c_A 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDIN 35 (281)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 4799999999999999999999872 48888764
No 489
>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1
Probab=87.95 E-value=0.53 Score=44.50 Aligned_cols=35 Identities=29% Similarity=0.527 Sum_probs=31.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
....|+|||+|-.|..+|..|...|.++|++++++
T Consensus 166 ~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~ 200 (404)
T 1gpj_A 166 HDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRT 200 (404)
T ss_dssp TTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSS
T ss_pred cCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 46789999999999999999999997569999875
No 490
>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1
Probab=87.93 E-value=0.56 Score=43.47 Aligned_cols=35 Identities=17% Similarity=0.260 Sum_probs=31.1
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
-....|+|+|+|-.|..+|..|.+.|. +|++.+.+
T Consensus 171 L~GktV~V~G~G~VG~~~A~~L~~~Ga-kVvv~D~~ 205 (364)
T 1leh_A 171 LEGLAVSVQGLGNVAKALCKKLNTEGA-KLVVTDVN 205 (364)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred CCcCEEEEECchHHHHHHHHHHHHCCC-EEEEEcCC
Confidence 345789999999999999999999999 79998853
No 491
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*
Probab=87.90 E-value=0.62 Score=42.21 Aligned_cols=34 Identities=18% Similarity=0.277 Sum_probs=30.4
Q ss_pred CCcEEEECC-ChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 27 SNSVIIVGA-GMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 27 ~~dViIIGa-GiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
+..|+|+|| |-.|...+..|.+.|+ +|+++-++.
T Consensus 11 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~l~R~~ 45 (318)
T 2r6j_A 11 KSKILIFGGTGYIGNHMVKGSLKLGH-PTYVFTRPN 45 (318)
T ss_dssp CCCEEEETTTSTTHHHHHHHHHHTTC-CEEEEECTT
T ss_pred CCeEEEECCCchHHHHHHHHHHHCCC-cEEEEECCC
Confidence 457999997 9999999999999999 799998764
No 492
>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*
Probab=87.77 E-value=0.43 Score=43.37 Aligned_cols=32 Identities=19% Similarity=0.277 Sum_probs=29.0
Q ss_pred cEEEECC-ChHHHHHHHHHHHcC--CCcEEEEecCC
Q 013178 29 SVIIVGA-GMSGFMAAKTLEEAG--YKDFIILEASS 61 (448)
Q Consensus 29 dViIIGa-GiaGL~aA~~L~~~G--~~~V~vlE~~~ 61 (448)
+|+|||| |-.|.+.|+.|++.| . +|+++|.+.
T Consensus 2 KI~IiGa~G~VG~~la~~L~~~~~~~-ev~L~Di~~ 36 (314)
T 1mld_A 2 KVAVLGASGGIGQPLSLLLKNSPLVS-RLTLYDIAH 36 (314)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTCS-EEEEEESSS
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCc-EEEEEeCCc
Confidence 7999998 999999999999988 5 799999864
No 493
>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*
Probab=87.65 E-value=0.66 Score=42.55 Aligned_cols=36 Identities=17% Similarity=0.194 Sum_probs=31.8
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
-....|.|||.|-.|...|..|+..|. +|++++++.
T Consensus 148 l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~ 183 (334)
T 2dbq_A 148 VYGKTIGIIGLGRIGQAIAKRAKGFNM-RILYYSRTR 183 (334)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred CCCCEEEEEccCHHHHHHHHHHHhCCC-EEEEECCCc
Confidence 345689999999999999999999999 899998753
No 494
>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*
Probab=87.55 E-value=0.61 Score=43.95 Aligned_cols=35 Identities=20% Similarity=0.235 Sum_probs=31.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
-....|+|||.|..|..+|..|+..|. +|++.|.+
T Consensus 218 L~GktV~ViG~G~IGk~vA~~Lra~Ga-~Viv~D~d 252 (435)
T 3gvp_A 218 FGGKQVVVCGYGEVGKGCCAALKAMGS-IVYVTEID 252 (435)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred ecCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 345789999999999999999999999 89999975
No 495
>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*
Probab=87.50 E-value=0.64 Score=44.94 Aligned_cols=35 Identities=23% Similarity=0.281 Sum_probs=31.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecC
Q 013178 25 PPSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEAS 60 (448)
Q Consensus 25 ~~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~ 60 (448)
.....|+|||+|..|..+|..|+..|. +|+++|.+
T Consensus 272 l~GktV~IiG~G~IG~~~A~~lka~Ga-~Viv~d~~ 306 (494)
T 3ce6_A 272 IGGKKVLICGYGDVGKGCAEAMKGQGA-RVSVTEID 306 (494)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred CCcCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 456789999999999999999999999 89999874
No 496
>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}
Probab=87.36 E-value=0.11 Score=43.94 Aligned_cols=35 Identities=20% Similarity=0.291 Sum_probs=30.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 26 PSNSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 26 ~~~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
+.++|.|||+|-.|.+.|..|.+.|. +|++++++.
T Consensus 18 ~~~~I~iIG~G~mG~~la~~L~~~G~-~V~~~~r~~ 52 (201)
T 2yjz_A 18 KQGVVCIFGTGDFGKSLGLKMLQCGY-SVVFGSRNP 52 (201)
Confidence 34579999999999999999999999 799998753
No 497
>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}
Probab=87.42 E-value=0.68 Score=41.25 Aligned_cols=34 Identities=18% Similarity=0.309 Sum_probs=29.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHcCCC--cEEEEecC
Q 013178 27 SNSVIIVGAGMSGFMAAKTLEEAGYK--DFIILEAS 60 (448)
Q Consensus 27 ~~dViIIGaGiaGL~aA~~L~~~G~~--~V~vlE~~ 60 (448)
+.+|.|||+|..|.+.|..|.++|+. +|++++++
T Consensus 3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~ 38 (280)
T 3tri_A 3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRS 38 (280)
T ss_dssp CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSS
T ss_pred CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCC
Confidence 46899999999999999999999972 58888874
No 498
>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}
Probab=87.42 E-value=0.73 Score=41.31 Aligned_cols=33 Identities=18% Similarity=0.365 Sum_probs=29.7
Q ss_pred CcEEEECC-ChHHHHHHHHHHHcCCCcEEEEecCC
Q 013178 28 NSVIIVGA-GMSGFMAAKTLEEAGYKDFIILEASS 61 (448)
Q Consensus 28 ~dViIIGa-GiaGL~aA~~L~~~G~~~V~vlE~~~ 61 (448)
++|+|.|| |..|...+.+|.++|+ +|+++-++.
T Consensus 1 MkILVTGatGfIG~~L~~~L~~~G~-~V~~l~R~~ 34 (298)
T 4b4o_A 1 MRVLVGGGTGFIGTALTQLLNARGH-EVTLVSRKP 34 (298)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCC
Confidence 46999998 9999999999999999 899997654
No 499
>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A
Probab=87.39 E-value=0.42 Score=43.73 Aligned_cols=35 Identities=23% Similarity=0.234 Sum_probs=29.7
Q ss_pred CCCcEEEEC-CChHHHHHHHHHHHcC--CCcEEEEecCC
Q 013178 26 PSNSVIIVG-AGMSGFMAAKTLEEAG--YKDFIILEASS 61 (448)
Q Consensus 26 ~~~dViIIG-aGiaGL~aA~~L~~~G--~~~V~vlE~~~ 61 (448)
++.+|+||| +|..|.+.|+.|.+.| . +|++++.+.
T Consensus 7 ~~mKI~ViGAaG~VG~~la~~L~~~g~~~-ev~l~Di~~ 44 (326)
T 1smk_A 7 PGFKVAILGAAGGIGQPLAMLMKMNPLVS-VLHLYDVVN 44 (326)
T ss_dssp -CEEEEEETTTSTTHHHHHHHHHHCTTEE-EEEEEESSS
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCCC-EEEEEeCCC
Confidence 346899999 7999999999999988 6 799998653
No 500
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=87.35 E-value=0.64 Score=46.16 Aligned_cols=34 Identities=26% Similarity=0.475 Sum_probs=32.0
Q ss_pred CcEEEECCChHHHHHHHHHHHcCCCcEEEEecCCC
Q 013178 28 NSVIIVGAGMSGFMAAKTLEEAGYKDFIILEASSR 62 (448)
Q Consensus 28 ~dViIIGaGiaGL~aA~~L~~~G~~~V~vlE~~~~ 62 (448)
.+|+|||+|-.|...|..|.+.|+ +|+++|++..
T Consensus 349 ~~viIiG~G~~G~~la~~L~~~g~-~v~vid~d~~ 382 (565)
T 4gx0_A 349 ELIFIIGHGRIGCAAAAFLDRKPV-PFILIDRQES 382 (565)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTC-CEEEEESSCC
T ss_pred CCEEEECCCHHHHHHHHHHHHCCC-CEEEEECChH
Confidence 789999999999999999999999 8999999764
Done!