BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 013179
         (448 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2VPJ|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl12
          Length = 301

 Score = 35.0 bits (79), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 4/92 (4%)

Query: 77  RAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIG 136
           R    A  +   +++ GG  GSRR       D +I QWS L   GD+ + R+  A   + 
Sbjct: 103 RGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSML---GDMQTARE-GAGLVVA 158

Query: 137 NRKIVMYGGWDGKKWLSDVYVLDTISLEWMQL 168
           +  I   GG+DG   L+ V   D  +  W  +
Sbjct: 159 SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNV 190



 Score = 34.3 bits (77), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 7/102 (6%)

Query: 89  MFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDG 148
           ++  GG  G   L      D     W+ +T      + +   A  A+ N  I + GG+DG
Sbjct: 162 IYCLGGYDGLNILNSVEKYDPHTGHWTNVTPM----ATKRSGAGVALLNDHIYVVGGFDG 217

Query: 149 KKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEKRL 190
              LS V   +  +  W  +    S+  PRC   AT++  RL
Sbjct: 218 TAHLSSVEAYNIRTDSWTTVT---SMTTPRCYVGATVLRGRL 256


>pdb|2XN4|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl2
           (mayven)
 pdb|2XN4|B Chain B, Crystal Structure Of The Kelch Domain Of Human Klhl2
           (mayven)
          Length = 302

 Score = 33.1 bits (74), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 51/136 (37%), Gaps = 14/136 (10%)

Query: 33  VVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIF 92
           +VV GG   K   S V  YD   + W Q             P  R     V +   +F  
Sbjct: 18  MVVVGGQAPKAIRS-VECYDFKEERWHQVAEL---------PSRRCRAGMVYMAGLVFAV 67

Query: 93  GGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWL 152
           GG  GS R+      D    QW+ + +  D    R     +A+ N  +   GG+DG   L
Sbjct: 68  GGFNGSLRVRTVDSYDPVKDQWTSVANMRD----RRSTLGAAVLNGLLYAVGGFDGSTGL 123

Query: 153 SDVYVLDTISLEWMQL 168
           S V   +  S EW  +
Sbjct: 124 SSVEAYNIKSNEWFHV 139


>pdb|3RD7|A Chain A, Crystal Structure Of Acyl-Coa Thioesterase From
           Mycobacterium Avium
 pdb|3RD7|B Chain B, Crystal Structure Of Acyl-Coa Thioesterase From
           Mycobacterium Avium
          Length = 286

 Score = 28.5 bits (62), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 3/31 (9%)

Query: 316 FGDIWWLVPEEDPIAKRYTESPPKVLPENKD 346
           FGD WW  P++ P   RY ++PP+V  +  D
Sbjct: 145 FGD-WW--PQQRPFTMRYLDAPPRVALDLSD 172


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.138    0.440 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,748,652
Number of Sequences: 62578
Number of extensions: 577042
Number of successful extensions: 953
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 942
Number of HSP's gapped (non-prelim): 15
length of query: 448
length of database: 14,973,337
effective HSP length: 102
effective length of query: 346
effective length of database: 8,590,381
effective search space: 2972271826
effective search space used: 2972271826
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)