Query 013179
Match_columns 448
No_of_seqs 320 out of 2495
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 01:12:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013179.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013179hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4693 Uncharacterized conser 100.0 1.7E-52 3.7E-57 362.0 24.5 356 1-385 1-371 (392)
2 PLN02193 nitrile-specifier pro 100.0 8.4E-46 1.8E-50 371.3 37.2 304 2-324 151-467 (470)
3 PLN02153 epithiospecifier prot 100.0 6.8E-45 1.5E-49 352.2 36.1 312 2-323 7-337 (341)
4 KOG4441 Proteins containing BT 100.0 3.9E-44 8.4E-49 363.4 28.7 270 30-338 284-555 (571)
5 PLN02193 nitrile-specifier pro 100.0 5.8E-41 1.3E-45 336.3 35.1 290 20-337 111-418 (470)
6 PHA02713 hypothetical protein; 100.0 7.1E-41 1.5E-45 341.1 30.0 270 32-337 259-541 (557)
7 PLN02153 epithiospecifier prot 100.0 1.4E-39 3E-44 315.1 31.2 274 53-337 4-292 (341)
8 KOG4441 Proteins containing BT 100.0 3.5E-40 7.7E-45 334.5 26.7 254 3-299 312-567 (571)
9 TIGR03547 muta_rot_YjhT mutatr 100.0 1.8E-38 3.8E-43 308.4 31.9 279 15-322 3-343 (346)
10 PHA02713 hypothetical protein; 100.0 3E-39 6.4E-44 329.3 26.3 241 3-285 283-543 (557)
11 KOG0379 Kelch repeat-containin 100.0 1.6E-38 3.5E-43 317.7 30.4 307 11-336 52-368 (482)
12 PRK14131 N-acetylneuraminic ac 100.0 4.2E-38 9.2E-43 308.0 31.0 282 15-325 24-368 (376)
13 KOG4693 Uncharacterized conser 100.0 3.6E-39 7.7E-44 279.4 19.4 240 2-255 54-313 (392)
14 TIGR03548 mutarot_permut cycli 100.0 5.6E-38 1.2E-42 301.7 29.7 267 19-312 3-314 (323)
15 KOG4152 Host cell transcriptio 100.0 7.6E-38 1.7E-42 292.6 22.0 308 1-327 16-365 (830)
16 PHA03098 kelch-like protein; P 100.0 3.3E-36 7.2E-41 309.1 27.7 269 31-338 251-520 (534)
17 PHA03098 kelch-like protein; P 100.0 1.3E-35 2.9E-40 304.7 28.0 235 20-285 285-521 (534)
18 KOG0379 Kelch repeat-containin 100.0 1.2E-35 2.5E-40 297.1 26.5 251 72-339 56-311 (482)
19 PHA02790 Kelch-like protein; P 100.0 5.7E-34 1.2E-38 286.6 27.2 209 28-283 270-478 (480)
20 TIGR03548 mutarot_permut cycli 100.0 1.2E-33 2.6E-38 271.6 24.9 231 3-257 52-316 (323)
21 PHA02790 Kelch-like protein; P 100.0 1.8E-33 3.9E-38 283.0 25.6 211 82-336 267-477 (480)
22 KOG1230 Protein containing rep 100.0 6.9E-34 1.5E-38 260.4 20.2 255 15-284 62-349 (521)
23 TIGR03547 muta_rot_YjhT mutatr 100.0 1.2E-32 2.6E-37 267.5 26.9 241 2-273 41-344 (346)
24 KOG1230 Protein containing rep 100.0 2.2E-33 4.7E-38 257.1 19.7 256 72-336 62-347 (521)
25 PRK14131 N-acetylneuraminic ac 100.0 1.8E-32 3.8E-37 268.4 27.7 249 2-281 62-374 (376)
26 KOG4152 Host cell transcriptio 100.0 2E-32 4.4E-37 256.4 14.8 312 55-400 16-360 (830)
27 KOG2437 Muskelin [Signal trans 100.0 1.3E-30 2.8E-35 243.8 4.5 375 2-408 239-677 (723)
28 COG3055 Uncharacterized protei 99.8 2.2E-18 4.7E-23 157.0 21.3 270 15-314 32-362 (381)
29 COG3055 Uncharacterized protei 99.7 3.7E-16 8E-21 142.6 20.4 234 3-275 71-374 (381)
30 KOG2437 Muskelin [Signal trans 99.7 2.6E-17 5.6E-22 155.1 5.5 250 110-368 237-510 (723)
31 PF13964 Kelch_6: Kelch motif 99.3 9.4E-12 2E-16 84.1 6.2 49 76-127 1-50 (50)
32 PF13964 Kelch_6: Kelch motif 99.1 1.2E-10 2.7E-15 78.6 6.3 49 126-178 1-50 (50)
33 PLN02772 guanylate kinase 99.0 1.4E-09 3E-14 103.8 11.2 89 73-163 21-110 (398)
34 PF13415 Kelch_3: Galactose ox 99.0 5.7E-10 1.2E-14 74.9 5.9 47 30-85 1-49 (49)
35 PF13415 Kelch_3: Galactose ox 99.0 6.6E-10 1.4E-14 74.6 5.9 47 86-135 1-49 (49)
36 PF01344 Kelch_1: Kelch motif; 99.0 6.7E-10 1.4E-14 74.0 5.2 44 76-119 1-45 (47)
37 PF07646 Kelch_2: Kelch motif; 99.0 1.5E-09 3.3E-14 72.8 6.1 44 76-119 1-47 (49)
38 PF13418 Kelch_4: Galactose ox 99.0 6.6E-10 1.4E-14 74.7 4.3 44 19-62 1-45 (49)
39 PLN02772 guanylate kinase 98.9 6.9E-09 1.5E-13 99.1 10.8 91 173-278 20-111 (398)
40 PF13418 Kelch_4: Galactose ox 98.9 2E-09 4.4E-14 72.3 4.0 47 126-175 1-48 (49)
41 PF07646 Kelch_2: Kelch motif; 98.9 6.4E-09 1.4E-13 69.7 6.1 47 234-285 1-48 (49)
42 PF01344 Kelch_1: Kelch motif; 98.8 4.9E-09 1.1E-13 69.7 4.1 46 126-175 1-47 (47)
43 PF13854 Kelch_5: Kelch motif 98.8 1.3E-08 2.9E-13 65.6 5.3 40 73-112 1-42 (42)
44 PF13854 Kelch_5: Kelch motif 98.7 3.5E-08 7.7E-13 63.6 5.4 40 16-56 1-42 (42)
45 smart00612 Kelch Kelch domain. 98.7 4.4E-08 9.6E-13 65.0 4.9 47 139-188 1-47 (47)
46 smart00612 Kelch Kelch domain. 98.6 4.4E-08 9.6E-13 64.9 4.6 47 32-87 1-47 (47)
47 PF07250 Glyoxal_oxid_N: Glyox 98.6 7.1E-06 1.5E-10 74.1 18.0 156 104-294 48-215 (243)
48 PF03089 RAG2: Recombination a 98.5 9.8E-05 2.1E-09 66.4 22.2 128 71-199 17-176 (337)
49 PF03089 RAG2: Recombination a 98.5 5.3E-06 1.1E-10 74.3 14.0 130 10-149 78-231 (337)
50 PF07250 Glyoxal_oxid_N: Glyox 98.3 1.6E-05 3.6E-10 71.8 14.3 146 48-226 48-206 (243)
51 TIGR01640 F_box_assoc_1 F-box 98.3 0.00037 7.9E-09 63.6 23.0 201 46-277 14-230 (230)
52 TIGR01640 F_box_assoc_1 F-box 98.1 0.00066 1.4E-08 61.9 20.6 188 102-309 14-215 (230)
53 PRK11138 outer membrane biogen 97.3 0.23 5E-06 49.1 25.2 220 27-309 66-302 (394)
54 PRK11138 outer membrane biogen 97.0 0.24 5.2E-06 49.0 22.3 195 47-308 171-383 (394)
55 PF07893 DUF1668: Protein of u 96.7 0.064 1.4E-06 51.9 15.3 119 28-169 74-215 (342)
56 PF12768 Rax2: Cortical protei 96.5 0.041 8.9E-07 51.2 11.6 112 44-169 14-129 (281)
57 PF13360 PQQ_2: PQQ-like domai 96.4 0.66 1.4E-05 41.9 24.9 185 26-278 32-233 (238)
58 TIGR03300 assembly_YfgL outer 96.1 1.6 3.4E-05 42.9 23.3 197 46-308 155-368 (377)
59 PF07893 DUF1668: Protein of u 96.0 0.32 6.9E-06 47.1 15.7 126 137-286 76-218 (342)
60 PF12768 Rax2: Cortical protei 96.0 0.082 1.8E-06 49.3 10.9 113 100-227 14-130 (281)
61 KOG2055 WD40 repeat protein [G 96.0 0.45 9.8E-06 46.2 15.8 155 16-197 210-366 (514)
62 PRK13684 Ycf48-like protein; P 95.9 1.8 3.9E-05 41.8 23.9 178 86-311 142-323 (334)
63 KOG2055 WD40 repeat protein [G 95.8 0.23 5E-06 48.1 13.0 150 87-278 225-377 (514)
64 TIGR03300 assembly_YfgL outer 95.4 2.9 6.2E-05 41.0 23.2 192 47-307 116-326 (377)
65 cd00094 HX Hemopexin-like repe 95.4 1.2 2.6E-05 39.2 15.6 99 81-196 11-119 (194)
66 PRK04792 tolB translocation pr 94.5 5.9 0.00013 39.9 21.2 146 46-226 242-390 (448)
67 PRK13684 Ycf48-like protein; P 94.4 5.1 0.00011 38.6 24.4 239 3-310 36-279 (334)
68 TIGR02800 propeller_TolB tol-p 94.1 6.6 0.00014 38.9 21.4 146 46-226 214-362 (417)
69 cd00094 HX Hemopexin-like repe 94.0 4.1 8.9E-05 35.8 16.0 142 24-196 11-167 (194)
70 PF02897 Peptidase_S9_N: Proly 93.7 3.7 8E-05 40.8 16.6 207 29-275 133-357 (414)
71 PRK05137 tolB translocation pr 93.2 10 0.00022 38.0 22.1 103 46-169 226-330 (435)
72 TIGR02800 propeller_TolB tol-p 93.0 10 0.00022 37.6 22.2 161 86-284 200-363 (417)
73 PF02191 OLF: Olfactomedin-lik 92.8 6.4 0.00014 36.1 15.1 183 30-251 30-237 (250)
74 PRK00178 tolB translocation pr 92.7 12 0.00025 37.5 21.4 145 46-226 223-371 (430)
75 PF14870 PSII_BNR: Photosynthe 92.6 9.5 0.00021 36.1 22.1 240 3-312 7-254 (302)
76 PRK04922 tolB translocation pr 92.6 12 0.00027 37.4 21.8 187 46-282 228-418 (433)
77 PRK00178 tolB translocation pr 92.6 12 0.00027 37.3 23.6 146 102-284 223-372 (430)
78 PF13360 PQQ_2: PQQ-like domai 92.5 7.7 0.00017 34.8 26.2 196 47-308 4-219 (238)
79 PRK04792 tolB translocation pr 91.8 16 0.00034 36.9 23.8 147 102-284 242-391 (448)
80 PF09910 DUF2139: Uncharacteri 91.5 12 0.00026 34.9 15.7 158 17-193 30-219 (339)
81 cd00200 WD40 WD40 domain, foun 91.5 10 0.00022 34.1 22.9 108 29-164 19-126 (289)
82 PF05096 Glu_cyclase_2: Glutam 91.3 2.2 4.7E-05 39.2 10.0 109 134-278 52-160 (264)
83 cd00200 WD40 WD40 domain, foun 91.1 11 0.00024 33.8 23.5 107 29-164 61-168 (289)
84 PF05096 Glu_cyclase_2: Glutam 91.0 6.6 0.00014 36.1 12.9 161 24-225 48-210 (264)
85 PF08450 SGL: SMP-30/Gluconola 90.8 13 0.00027 33.9 21.8 199 30-284 11-222 (246)
86 PF08268 FBA_3: F-box associat 90.6 1.9 4.1E-05 35.1 8.3 84 137-226 5-88 (129)
87 PRK04922 tolB translocation pr 90.3 21 0.00046 35.7 22.4 148 102-284 228-377 (433)
88 TIGR03866 PQQ_ABC_repeats PQQ- 90.2 15 0.00033 33.9 20.9 103 32-164 2-106 (300)
89 TIGR03075 PQQ_enz_alc_DH PQQ-d 90.0 26 0.00056 36.2 24.5 126 27-168 66-198 (527)
90 PRK05137 tolB translocation pr 89.9 23 0.0005 35.5 25.1 193 45-284 181-375 (435)
91 PF14870 PSII_BNR: Photosynthe 88.8 22 0.00047 33.7 20.2 222 28-310 69-295 (302)
92 PF02897 Peptidase_S9_N: Proly 88.3 26 0.00057 34.7 16.3 194 86-312 134-347 (414)
93 PRK03629 tolB translocation pr 88.1 31 0.00066 34.6 23.7 170 102-312 223-395 (429)
94 PRK04043 tolB translocation pr 87.9 31 0.00067 34.5 19.6 152 102-285 213-367 (419)
95 PF08450 SGL: SMP-30/Gluconola 87.5 22 0.00048 32.3 18.3 164 29-226 50-221 (246)
96 PF08268 FBA_3: F-box associat 85.3 7.8 0.00017 31.4 8.8 84 242-336 3-87 (129)
97 PRK03629 tolB translocation pr 84.6 46 0.001 33.3 20.9 190 46-282 223-413 (429)
98 TIGR03866 PQQ_ABC_repeats PQQ- 84.1 35 0.00075 31.4 24.3 106 31-165 43-149 (300)
99 COG4946 Uncharacterized protei 83.7 49 0.0011 32.9 17.0 208 44-285 57-305 (668)
100 PF14583 Pectate_lyase22: Olig 83.7 28 0.0006 34.0 12.8 245 21-311 37-303 (386)
101 PRK04043 tolB translocation pr 83.2 52 0.0011 32.8 22.5 194 46-284 213-409 (419)
102 PF03178 CPSF_A: CPSF A subuni 83.2 29 0.00062 33.1 13.1 125 153-311 62-193 (321)
103 KOG0310 Conserved WD40 repeat- 82.4 55 0.0012 32.5 18.1 114 23-163 72-186 (487)
104 PF02191 OLF: Olfactomedin-lik 81.3 44 0.00096 30.7 16.7 142 44-194 87-237 (250)
105 PF09910 DUF2139: Uncharacteri 81.0 49 0.0011 31.0 18.6 159 73-250 29-219 (339)
106 COG4257 Vgb Streptogramin lyas 80.5 49 0.0011 30.7 15.5 190 103-346 84-276 (353)
107 PRK02889 tolB translocation pr 80.2 67 0.0014 32.1 21.1 149 102-284 220-369 (427)
108 PF10282 Lactonase: Lactonase, 80.1 50 0.0011 31.9 13.7 168 79-284 146-333 (345)
109 PLN00033 photosystem II stabil 79.8 67 0.0014 31.8 25.4 222 25-309 142-389 (398)
110 PRK11028 6-phosphogluconolacto 79.4 59 0.0013 30.9 23.4 104 32-162 3-111 (330)
111 PF12217 End_beta_propel: Cata 78.4 54 0.0012 30.0 18.3 218 28-254 83-334 (367)
112 PLN00033 photosystem II stabil 75.5 89 0.0019 31.0 26.5 116 29-168 99-214 (398)
113 KOG0310 Conserved WD40 repeat- 75.4 20 0.00043 35.5 8.9 111 130-280 72-190 (487)
114 PRK02889 tolB translocation pr 75.1 93 0.002 31.1 21.1 103 46-169 220-324 (427)
115 PF12217 End_beta_propel: Cata 74.5 70 0.0015 29.3 18.4 210 31-253 26-258 (367)
116 PLN00181 protein SPA1-RELATED; 73.6 1.4E+02 0.0031 32.5 22.1 64 87-164 545-609 (793)
117 smart00284 OLF Olfactomedin-li 72.3 80 0.0017 29.0 18.0 184 31-251 35-242 (255)
118 KOG0649 WD40 repeat protein [G 72.1 78 0.0017 28.8 14.9 147 16-194 112-263 (325)
119 COG4257 Vgb Streptogramin lyas 70.5 92 0.002 29.0 18.8 182 47-284 125-314 (353)
120 PRK11028 6-phosphogluconolacto 70.4 1E+02 0.0022 29.3 24.7 96 46-162 57-157 (330)
121 PTZ00421 coronin; Provisional 70.3 1.3E+02 0.0029 30.7 20.3 64 87-164 138-201 (493)
122 cd00216 PQQ_DH Dehydrogenases 69.6 1.4E+02 0.0029 30.6 28.0 75 31-118 111-193 (488)
123 PF02239 Cytochrom_D1: Cytochr 68.5 1.2E+02 0.0027 29.6 13.9 186 45-282 15-209 (369)
124 cd00216 PQQ_DH Dehydrogenases 62.7 1.8E+02 0.004 29.6 21.9 122 28-168 59-192 (488)
125 TIGR03075 PQQ_enz_alc_DH PQQ-d 61.6 2E+02 0.0044 29.7 19.0 99 80-193 63-171 (527)
126 PF13088 BNR_2: BNR repeat-lik 60.0 1.4E+02 0.003 27.4 11.6 155 26-192 114-275 (275)
127 KOG4649 PQQ (pyrrolo-quinoline 59.6 1.5E+02 0.0032 27.4 14.5 107 25-164 16-126 (354)
128 PF10282 Lactonase: Lactonase, 56.7 1.9E+02 0.0041 27.8 20.7 60 48-119 17-81 (345)
129 PRK01742 tolB translocation pr 54.8 2.3E+02 0.005 28.2 21.8 60 102-169 228-288 (429)
130 COG4946 Uncharacterized protei 52.2 2.6E+02 0.0057 28.1 16.1 190 31-283 236-439 (668)
131 KOG1036 Mitotic spindle checkp 51.7 2.1E+02 0.0046 26.9 14.1 102 31-164 65-166 (323)
132 PF03178 CPSF_A: CPSF A subuni 48.9 2.4E+02 0.0052 26.7 13.3 120 46-195 62-190 (321)
133 PRK10115 protease 2; Provision 46.5 4E+02 0.0087 28.6 20.3 212 30-283 137-354 (686)
134 KOG0291 WD40-repeat-containing 45.8 4.1E+02 0.0089 28.5 13.2 109 29-166 360-471 (893)
135 PF13540 RCC1_2: Regulator of 45.7 31 0.00066 19.8 2.8 18 21-38 8-25 (30)
136 smart00284 OLF Olfactomedin-li 45.6 2.5E+02 0.0054 25.9 17.0 167 16-194 70-242 (255)
137 KOG0296 Angio-associated migra 44.7 3E+02 0.0065 26.6 14.1 108 30-167 75-184 (399)
138 PTZ00421 coronin; Provisional 43.2 3.8E+02 0.0083 27.4 17.1 63 32-113 139-201 (493)
139 PLN00181 protein SPA1-RELATED; 42.6 4.9E+02 0.011 28.4 22.7 62 86-163 587-650 (793)
140 TIGR03074 PQQ_membr_DH membran 42.4 4.1E+02 0.0088 29.0 12.5 29 28-62 192-222 (764)
141 KOG2321 WD40 repeat protein [G 40.5 3.7E+02 0.008 27.8 10.8 122 18-164 132-261 (703)
142 KOG0316 Conserved WD40 repeat- 38.8 3.1E+02 0.0066 25.0 13.6 178 46-278 81-260 (307)
143 KOG2321 WD40 repeat protein [G 38.7 3.6E+02 0.0079 27.9 10.5 64 126-198 133-197 (703)
144 KOG2048 WD40 repeat protein [G 37.0 5.2E+02 0.011 27.2 19.7 87 173-284 423-514 (691)
145 KOG0281 Beta-TrCP (transducin 36.0 2.2E+02 0.0047 27.4 8.0 77 232-328 357-433 (499)
146 COG1520 FOG: WD40-like repeat 35.4 4.2E+02 0.0091 25.6 23.4 111 27-169 65-181 (370)
147 PF06433 Me-amine-dh_H: Methyl 33.7 3.3E+02 0.0072 26.3 9.1 72 31-117 48-133 (342)
148 KOG0289 mRNA splicing factor [ 32.0 5.3E+02 0.011 25.7 13.8 118 24-169 352-470 (506)
149 KOG0289 mRNA splicing factor [ 31.9 5.3E+02 0.011 25.7 14.6 125 126-287 347-474 (506)
150 PRK01742 tolB translocation pr 31.7 5.3E+02 0.011 25.6 21.6 102 46-168 228-331 (429)
151 PF13570 PQQ_3: PQQ-like domai 31.6 84 0.0018 19.1 3.4 26 238-276 15-40 (40)
152 KOG0646 WD40 repeat protein [G 30.2 5.7E+02 0.012 25.6 14.8 208 23-279 85-311 (476)
153 PF07734 FBA_1: F-box associat 30.2 3.3E+02 0.0072 22.8 9.2 82 83-169 2-91 (164)
154 PRK10115 protease 2; Provision 28.7 7.6E+02 0.016 26.5 23.4 216 25-285 177-404 (686)
155 COG1520 FOG: WD40-like repeat 26.9 5.9E+02 0.013 24.6 21.0 98 47-167 122-225 (370)
156 KOG4649 PQQ (pyrrolo-quinoline 25.9 5.4E+02 0.012 23.9 10.0 80 2-113 45-126 (354)
157 KOG0649 WD40 repeat protein [G 25.2 5.4E+02 0.012 23.6 13.6 77 111-197 98-177 (325)
158 PRK01029 tolB translocation pr 24.5 7.1E+02 0.015 24.8 19.6 61 211-284 352-412 (428)
159 PLN03215 ascorbic acid mannose 23.9 7E+02 0.015 24.5 10.8 107 162-287 189-306 (373)
160 PF09826 Beta_propel: Beta pro 23.5 8.3E+02 0.018 25.2 19.2 158 138-308 172-342 (521)
161 KOG0318 WD40 repeat stress pro 22.9 8.4E+02 0.018 25.0 14.1 139 136-312 453-594 (603)
162 KOG0266 WD40 repeat-containing 21.9 8.2E+02 0.018 24.6 19.5 68 83-165 254-322 (456)
163 KOG0282 mRNA splicing factor [ 20.7 5.3E+02 0.012 25.9 8.0 64 86-163 269-332 (503)
No 1
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=1.7e-52 Score=362.02 Aligned_cols=356 Identities=23% Similarity=0.361 Sum_probs=298.5
Q ss_pred CcceEEeeeCCCCCCCCCCCCCcEEEEECCcEEEEEcCCCCCc-----ccCceEEEEcCCCcEEeeeecCCC----CCCC
Q 013179 1 MHYWVRASSSDFGGTVPQPRSGHSAVNIGKSKVVVFGGLVDKR-----FLSDVVVYDIDNKLWFQPECTGNG----SNGQ 71 (448)
Q Consensus 1 ~~~W~~~~~~~~~g~~P~~R~~~~~~~~~~~~iyv~GG~~~~~-----~~~~~~~yd~~~~~W~~~~~~~~~----~~~~ 71 (448)
|+.|+.-.. +| +.|.+|+++.++ .+||-|||+..+. .--|+.+++..+-+|+++++.-.. ...+
T Consensus 1 m~~WTVHLe---GG---PrRVNHAavaVG-~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp 73 (392)
T KOG4693|consen 1 MATWTVHLE---GG---PRRVNHAAVAVG-SRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYP 73 (392)
T ss_pred CceEEEEec---CC---cccccceeeeec-ceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCC
Confidence 778988765 44 689999999999 7999999986432 234899999999999999873211 1123
Q ss_pred CCCCCCcceeEEEECCeEEEEcccCC-CCCCCcEEEEECCCCcEEEeecCCCCCCcCcccEEEEECCcEEEEEecCCCC-
Q 013179 72 VGPGPRAFHIAVAIDCHMFIFGGRFG-SRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGK- 149 (448)
Q Consensus 72 ~~p~~R~~h~~~~~~~~lyv~GG~~~-~~~~~~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~- 149 (448)
..|-.|++|+.+.+++++||+||++. ...++-+++||+++++|.+....|-+|.+|.+|++|++++ .+|||||+..+
T Consensus 74 ~VPyqRYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn-~MyiFGGye~~a 152 (392)
T KOG4693|consen 74 AVPYQRYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGN-QMYIFGGYEEDA 152 (392)
T ss_pred ccchhhcCceEEEEcceEEEEcCccCcccccceeeeeccccccccccceeeecCCccCCceeeEECc-EEEEecChHHHH
Confidence 45778999999999999999999987 5668889999999999999888888999999999999987 99999998754
Q ss_pred -ccCCceEEEeCCCCceEeecCCCCCCCccCCceeEEeCCEEEEEcccCCCCCc---cCceeeecccccccCCCCceEEe
Q 013179 150 -KWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPI---MGDLWALKGLIEEENETPGWTQL 225 (448)
Q Consensus 150 -~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~---~~d~~~~~~~~~yd~~~~~W~~~ 225 (448)
.+.++++.+|+.|.+|+.+.+.|..|.-|..|+++++++.+|||||+...... .++.|+ +.+..+|+.|..|...
T Consensus 153 ~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc-~~i~~ld~~T~aW~r~ 231 (392)
T KOG4693|consen 153 QRFSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYC-DTIMALDLATGAWTRT 231 (392)
T ss_pred HhhhccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhc-ceeEEEeccccccccC
Confidence 57889999999999999999999999999999999999999999998765432 233333 6677789999999999
Q ss_pred cCCCCCCCCCceeEEEEeCCEEEEEcCCCCCCCcccccceeCcEEEEEcCCCceEEeccCCCCCCCccceEEEEECCEEE
Q 013179 226 KLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPIGNEPPPARAYHSMTCLGSLYL 305 (448)
Q Consensus 226 ~~~g~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~i~ 305 (448)
+..+..|..|..|++.+++++||+|||++.. .+.-+||+|.|||.+..|+.|...+.-|++|..+++++.++++|
T Consensus 232 p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~-----ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~g~kv~ 306 (392)
T KOG4693|consen 232 PENTMKPGGRRSHSTFVYNGKMYMFGGYNGT-----LNVHFNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVVSGGKVY 306 (392)
T ss_pred CCCCcCCCcccccceEEEcceEEEecccchh-----hhhhhcceeecccccchheeeeccCCCCCcccceeEEEECCEEE
Confidence 8888899999999999999999999999864 36778999999999999999999988899999999999999999
Q ss_pred EEccCCCCCccCceEEecCCCCcccCceecCCCCCCCCCCccCCCCcCCcccccccccCCchHHHHHHHhCceEEeecCc
Q 013179 306 LFGGFDGKSTFGDIWWLVPEEDPIAKRYTESPPKVLPENKDVGMENYNSQFAVKESQRESSAIVELQKKLDISVSLSRPG 385 (448)
Q Consensus 306 v~GG~~~~~~~~d~w~~~~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (448)
+|||........ ..| ++.--..++..++|.++++. ++++|++++++++++++.+++++.+....+
T Consensus 307 LFGGTsP~~~~~--------~Sp-t~~~G~~~~~~LiD~SDLHv------LDF~PsLKTLa~~~Vl~~~ldqs~Lp~diR 371 (392)
T KOG4693|consen 307 LFGGTSPLPCHP--------LSP-TNYNGMISPSGLIDLSDLHV------LDFAPSLKTLAMQSVLMFELDQSELPADIR 371 (392)
T ss_pred EecCCCCCCCCC--------CCc-cccCCCCCccccccccccee------eecChhHHHHHHHHHHHHhhhhhhcchhhh
Confidence 999976422110 011 11112345568899999988 999999999999999999999988854443
No 2
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=8.4e-46 Score=371.29 Aligned_cols=304 Identities=24% Similarity=0.434 Sum_probs=250.7
Q ss_pred cceEEeeeCCCCCCCCCCCCCcEEEEECCcEEEEEcCCCC-C-cccCceEEEEcCCCcEEeeeecCCCCCCCCCCC-CCc
Q 013179 2 HYWVRASSSDFGGTVPQPRSGHSAVNIGKSKVVVFGGLVD-K-RFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPG-PRA 78 (448)
Q Consensus 2 ~~W~~~~~~~~~g~~P~~R~~~~~~~~~~~~iyv~GG~~~-~-~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~-~R~ 78 (448)
.+|.++++ .++.|.+|.+|++++++ ++||++||... . ...+++|+||+.+++|+.++..+ ..|. +|.
T Consensus 151 ~~W~~~~~---~~~~P~pR~~h~~~~~~-~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g------~~P~~~~~ 220 (470)
T PLN02193 151 GKWIKVEQ---KGEGPGLRCSHGIAQVG-NKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATG------DVPHLSCL 220 (470)
T ss_pred ceEEEccc---CCCCCCCccccEEEEEC-CEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCC------CCCCCccc
Confidence 47999986 56789999999999998 78999999853 2 24578999999999999876432 1343 467
Q ss_pred ceeEEEECCeEEEEcccCCCCCCCcEEEEECCCCcEEEeecCCCCCCcCcccEEEEECCcEEEEEecCCCCccCCceEEE
Q 013179 79 FHIAVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVL 158 (448)
Q Consensus 79 ~h~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~y 158 (448)
+|++++++++||||||......++++|+||+.+++|+++.+.+..|.+|..|+++++++ +|||+||.+....+++++.|
T Consensus 221 ~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~-~iYv~GG~~~~~~~~~~~~y 299 (470)
T PLN02193 221 GVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEE-NVYVFGGVSATARLKTLDSY 299 (470)
T ss_pred ceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECC-EEEEECCCCCCCCcceEEEE
Confidence 89999999999999999877778999999999999999987555589999999998865 99999999887778999999
Q ss_pred eCCCCceEeecCCCCCCCccCCceeEEeCCEEEEEcccCCCCCccCceeeecccccccCCCCceEEecCCCCCCCCCcee
Q 013179 159 DTISLEWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGH 238 (448)
Q Consensus 159 d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~~~~~~~yd~~~~~W~~~~~~g~~p~~r~~~ 238 (448)
|+.+++|+.++..+.+|.+|.+|+++.++++|||+||..+. .++++++||+++++|+.++..+..|.+|..|
T Consensus 300 d~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~--------~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~ 371 (470)
T PLN02193 300 NIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGC--------EVDDVHYYDPVQDKWTQVETFGVRPSERSVF 371 (470)
T ss_pred ECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCC--------ccCceEEEECCCCEEEEeccCCCCCCCccee
Confidence 99999999998766788999999999999999999997543 1366777899999999998777789999999
Q ss_pred EEEEeCCEEEEEcCCCCCCCc--ccccceeCcEEEEEcCCCceEEeccCC---CCCCCccceEEE--EE-C-CEEEEEcc
Q 013179 239 TITSGGHYLLLFGGHGTGGWL--SRYDIYYNDTIILDRLSAQWKRLPIGN---EPPPARAYHSMT--CL-G-SLYLLFGG 309 (448)
Q Consensus 239 ~~~~~~~~i~v~GG~~~~~~~--~~~~~~~~~v~~yd~~~~~W~~~~~~~---~~p~~r~~~~~~--~~-~-~~i~v~GG 309 (448)
++++++++||||||....... .....+++++|+||+.+++|+.+...+ .+|.+|..|+++ .+ + +.+++|||
T Consensus 372 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~~~~~~P~~R~~~~~~~~~~~~~~~~~~fGG 451 (470)
T PLN02193 372 ASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFGEEEETPSSRGWTASTTGTIDGKKGLVMHGG 451 (470)
T ss_pred EEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcccCCCCCCCCCCCccccceeeEEcCCceEEEEcC
Confidence 999999999999997642110 011246789999999999999997654 357888777543 23 3 45999999
Q ss_pred CCC-CCccCceEEecC
Q 013179 310 FDG-KSTFGDIWWLVP 324 (448)
Q Consensus 310 ~~~-~~~~~d~w~~~~ 324 (448)
... +..++|+|.+..
T Consensus 452 ~~~~~~~~~D~~~~~~ 467 (470)
T PLN02193 452 KAPTNDRFDDLFFYGI 467 (470)
T ss_pred CCCccccccceEEEec
Confidence 975 568999998743
No 3
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=6.8e-45 Score=352.16 Aligned_cols=312 Identities=23% Similarity=0.385 Sum_probs=241.1
Q ss_pred cceEEeeeCCCCCCCCCCCCCcEEEEECCcEEEEEcCCCC--CcccCceEEEEcCCCcEEeeeecCCCCCCCCCCC-CCc
Q 013179 2 HYWVRASSSDFGGTVPQPRSGHSAVNIGKSKVVVFGGLVD--KRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPG-PRA 78 (448)
Q Consensus 2 ~~W~~~~~~~~~g~~P~~R~~~~~~~~~~~~iyv~GG~~~--~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~-~R~ 78 (448)
-.|.++.+. .+.+|.+|.+|++++++ ++|||+||... ....+++++||+.+++|+.++..+ ..|. .+.
T Consensus 7 ~~W~~~~~~--~~~~P~pR~~h~~~~~~-~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~------~~p~~~~~ 77 (341)
T PLN02153 7 GGWIKVEQK--GGKGPGPRCSHGIAVVG-DKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANG------DVPRISCL 77 (341)
T ss_pred CeEEEecCC--CCCCCCCCCcceEEEEC-CEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccC------CCCCCccC
Confidence 469988752 34689999999999988 78999999853 335689999999999999886432 1222 345
Q ss_pred ceeEEEECCeEEEEcccCCCCCCCcEEEEECCCCcEEEeecC--CCCCCcCcccEEEEECCcEEEEEecCCCC------c
Q 013179 79 FHIAVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSF--GDLPSPRDFAAASAIGNRKIVMYGGWDGK------K 150 (448)
Q Consensus 79 ~h~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~--~~~p~~r~~~~~~~~~~~~iyv~GG~~~~------~ 150 (448)
+|++++++++||||||......++++++||+.+++|+.+++. ...|.+|..|++++.++ +|||+||.+.. .
T Consensus 78 ~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~-~iyv~GG~~~~~~~~~~~ 156 (341)
T PLN02153 78 GVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDEN-HVYVFGGVSKGGLMKTPE 156 (341)
T ss_pred ceEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECC-EEEEECCccCCCccCCCc
Confidence 799999999999999998777788999999999999998741 12388999999998865 99999998643 2
Q ss_pred cCCceEEEeCCCCceEeecCCCCCCCccCCceeEEeCCEEEEEcccCCCCCc-cCceeeecccccccCCCCceEEecCCC
Q 013179 151 WLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPI-MGDLWALKGLIEEENETPGWTQLKLPG 229 (448)
Q Consensus 151 ~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~-~~d~~~~~~~~~yd~~~~~W~~~~~~g 229 (448)
.+++++.||+.+++|+.++..+..|.+|.+|+++.++++|||+||....... -.+-..++.+++||+++++|+.++..+
T Consensus 157 ~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g 236 (341)
T PLN02153 157 RFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTG 236 (341)
T ss_pred ccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccC
Confidence 4578999999999999998655566899999999999999999997532000 001112467888899999999998777
Q ss_pred CCCCCCceeEEEEeCCEEEEEcCCCCCCC--cccccceeCcEEEEEcCCCceEEeccCCCCCCCc--cceEEEE-E-CCE
Q 013179 230 QAPSSRCGHTITSGGHYLLLFGGHGTGGW--LSRYDIYYNDTIILDRLSAQWKRLPIGNEPPPAR--AYHSMTC-L-GSL 303 (448)
Q Consensus 230 ~~p~~r~~~~~~~~~~~i~v~GG~~~~~~--~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r--~~~~~~~-~-~~~ 303 (448)
.+|.+|..|++++.+++||||||...... ........+++|+||+.+++|+++.....+|.|| ..++++. . +++
T Consensus 237 ~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~ 316 (341)
T PLN02153 237 AKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGKNG 316 (341)
T ss_pred CCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccCCcce
Confidence 78999999999999999999999742110 0011345789999999999999997654444454 3334433 3 458
Q ss_pred EEEEccCCCC-CccCceEEec
Q 013179 304 YLLFGGFDGK-STFGDIWWLV 323 (448)
Q Consensus 304 i~v~GG~~~~-~~~~d~w~~~ 323 (448)
|||+||.... ..++|+|.+.
T Consensus 317 ~~~~gG~~~~~~~~~~~~~~~ 337 (341)
T PLN02153 317 LLMHGGKLPTNERTDDLYFYA 337 (341)
T ss_pred EEEEcCcCCCCccccceEEEe
Confidence 9999999764 5789988764
No 4
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=3.9e-44 Score=363.40 Aligned_cols=270 Identities=24% Similarity=0.409 Sum_probs=248.3
Q ss_pred CcEEEEEcCCCC-CcccCceEEEEcCCCcEEeeeecCCCCCCCCCCCCCcceeEEEECCeEEEEcccC-CCCCCCcEEEE
Q 013179 30 KSKVVVFGGLVD-KRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRF-GSRRLGDFWVL 107 (448)
Q Consensus 30 ~~~iyv~GG~~~-~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~lyv~GG~~-~~~~~~~~~~~ 107 (448)
.+.||++||+.+ .+.++.+..||+.++.|..++ ++|.+|..+++++++++||+.||++ +...++.+|+|
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a---------~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~Y 354 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLA---------PMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERY 354 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecC---------CCCcccccccEEEECCEEEEEccccCCCcccceEEEe
Confidence 378999999986 678899999999999999987 6789999999999999999999999 78889999999
Q ss_pred ECCCCcEEEeecCCCCCCcCcccEEEEECCcEEEEEecCCCCccCCceEEEeCCCCceEeecCCCCCCCccCCceeEEeC
Q 013179 108 DTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVE 187 (448)
Q Consensus 108 d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~ 187 (448)
|+.+++|..+++ |+.+|..++++++++ .||++||+++...++++++||+.+++|+.++ +|+.+|++|+++.++
T Consensus 355 D~~~~~W~~~a~---M~~~R~~~~v~~l~g-~iYavGG~dg~~~l~svE~YDp~~~~W~~va---~m~~~r~~~gv~~~~ 427 (571)
T KOG4441|consen 355 DPRTNQWTPVAP---MNTKRSDFGVAVLDG-KLYAVGGFDGEKSLNSVECYDPVTNKWTPVA---PMLTRRSGHGVAVLG 427 (571)
T ss_pred cCCCCceeccCC---ccCccccceeEEECC-EEEEEeccccccccccEEEecCCCCcccccC---CCCcceeeeEEEEEC
Confidence 999999999885 999999999999965 9999999999999999999999999999998 999999999999999
Q ss_pred CEEEEEcccCCCCCccCceeeecccccccCCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCCCCCCCcccccceeC
Q 013179 188 KRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYN 267 (448)
Q Consensus 188 ~~lyv~GG~~~~~~~~~d~~~~~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~ 267 (448)
++||++||...... .++.+++|||.+++|+.++ +++.+|.++++++.+++||++||.+.. ....
T Consensus 428 g~iYi~GG~~~~~~------~l~sve~YDP~t~~W~~~~---~M~~~R~~~g~a~~~~~iYvvGG~~~~-------~~~~ 491 (571)
T KOG4441|consen 428 GKLYIIGGGDGSSN------CLNSVECYDPETNTWTLIA---PMNTRRSGFGVAVLNGKIYVVGGFDGT-------SALS 491 (571)
T ss_pred CEEEEEcCcCCCcc------ccceEEEEcCCCCceeecC---CcccccccceEEEECCEEEEECCccCC-------Cccc
Confidence 99999999877653 5789999999999999999 899999999999999999999998862 2456
Q ss_pred cEEEEEcCCCceEEeccCCCCCCCccceEEEEECCEEEEEccCCCCCccCceEEecCCCCcccCceecCCC
Q 013179 268 DTIILDRLSAQWKRLPIGNEPPPARAYHSMTCLGSLYLLFGGFDGKSTFGDIWWLVPEEDPIAKRYTESPP 338 (448)
Q Consensus 268 ~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~d~w~~~~~yd~~~~~w~~~~~ 338 (448)
.+++|||.+++|+.+.++. .+|..+.++++++++|++||.++...++. ++.|||.+++|+....
T Consensus 492 ~VE~ydp~~~~W~~v~~m~---~~rs~~g~~~~~~~ly~vGG~~~~~~l~~----ve~ydp~~d~W~~~~~ 555 (571)
T KOG4441|consen 492 SVERYDPETNQWTMVAPMT---SPRSAVGVVVLGGKLYAVGGFDGNNNLNT----VECYDPETDTWTEVTE 555 (571)
T ss_pred eEEEEcCCCCceeEcccCc---cccccccEEEECCEEEEEecccCccccce----eEEcCCCCCceeeCCC
Confidence 6999999999999997764 48999999999999999999999888887 6789999999998854
No 5
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=5.8e-41 Score=336.34 Aligned_cols=290 Identities=23% Similarity=0.361 Sum_probs=236.7
Q ss_pred CCCcEEEEECCcEEEEEcCCCCCcccCceEEE--EcCC----CcEEeeeecCCCCCCCCCCCCCcceeEEEECCeEEEEc
Q 013179 20 RSGHSAVNIGKSKVVVFGGLVDKRFLSDVVVY--DIDN----KLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFG 93 (448)
Q Consensus 20 R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~y--d~~~----~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~lyv~G 93 (448)
..|...++ .+++|+.|+|..+. .++.+-.| ++.+ ++|..++..+ .+|.||.+|++++++++|||+|
T Consensus 111 ~~g~~f~~-~~~~ivgf~G~~~~-~~~~ig~y~~~~~~~~~~~~W~~~~~~~------~~P~pR~~h~~~~~~~~iyv~G 182 (470)
T PLN02193 111 RPGVKFVL-QGGKIVGFHGRSTD-VLHSLGAYISLPSTPKLLGKWIKVEQKG------EGPGLRCSHGIAQVGNKIYSFG 182 (470)
T ss_pred CCCCEEEE-cCCeEEEEeccCCC-cEEeeEEEEecCCChhhhceEEEcccCC------CCCCCccccEEEEECCEEEEEC
Confidence 44555544 56899999998544 35555444 6655 7999987543 3688999999999999999999
Q ss_pred ccCC-C-CCCCcEEEEECCCCcEEEeecCCCCCCc-CcccEEEEECCcEEEEEecCCCCccCCceEEEeCCCCceEeecC
Q 013179 94 GRFG-S-RRLGDFWVLDTDIWQWSELTSFGDLPSP-RDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPV 170 (448)
Q Consensus 94 G~~~-~-~~~~~~~~~d~~t~~W~~~~~~~~~p~~-r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~ 170 (448)
|... . ...+++|+||+.+++|+.+++.+++|.. |..|+++++++ +||||||.+....++++++||+.+++|+++++
T Consensus 183 G~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~-~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~ 261 (470)
T PLN02193 183 GEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGS-TLYVFGGRDASRQYNGFYSFDTTTNEWKLLTP 261 (470)
T ss_pred CcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECC-EEEEECCCCCCCCCccEEEEECCCCEEEEcCc
Confidence 9853 2 2347899999999999998776666654 56888888865 99999999877778999999999999999985
Q ss_pred CCCCCCccCCceeEEeCCEEEEEcccCCCCCccCceeeecccccccCCCCceEEecCCCCCCCCCceeEEEEeCCEEEEE
Q 013179 171 TGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLF 250 (448)
Q Consensus 171 ~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~~~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~~~~~i~v~ 250 (448)
.+..|.+|..|+++.++++|||+||..... .+++++.||+.+++|+.++.++.+|.+|..|++++++++|||+
T Consensus 262 ~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~-------~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyvi 334 (470)
T PLN02193 262 VEEGPTPRSFHSMAADEENVYVFGGVSATA-------RLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVV 334 (470)
T ss_pred CCCCCCCccceEEEEECCEEEEECCCCCCC-------CcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEE
Confidence 444589999999999999999999987543 2466778899999999998777788999999999999999999
Q ss_pred cCCCCCCCcccccceeCcEEEEEcCCCceEEeccCCCCCCCccceEEEEECCEEEEEccCCCC---------CccCceEE
Q 013179 251 GGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPIGNEPPPARAYHSMTCLGSLYLLFGGFDGK---------STFGDIWW 321 (448)
Q Consensus 251 GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~---------~~~~d~w~ 321 (448)
||.+.. .++++|+||+.+++|++++..+..|.+|..|+++.++++||||||.... ...+|+|
T Consensus 335 GG~~g~--------~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~- 405 (470)
T PLN02193 335 YGFNGC--------EVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTF- 405 (470)
T ss_pred ECCCCC--------ccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEE-
Confidence 997531 3589999999999999998876678999999999999999999998531 2346766
Q ss_pred ecCCCCcccCceecCC
Q 013179 322 LVPEEDPIAKRYTESP 337 (448)
Q Consensus 322 ~~~~yd~~~~~w~~~~ 337 (448)
.||+.+++|+..+
T Consensus 406 ---~~D~~t~~W~~~~ 418 (470)
T PLN02193 406 ---ALDTETLQWERLD 418 (470)
T ss_pred ---EEEcCcCEEEEcc
Confidence 5566799999774
No 6
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=7.1e-41 Score=341.14 Aligned_cols=270 Identities=13% Similarity=0.126 Sum_probs=227.0
Q ss_pred EEEEEcCCCCCcccCceEEEEcCCCcEEeeeecCCCCCCCCCCCCCcceeEEEECCeEEEEcccC-CCCCCCcEEEEECC
Q 013179 32 KVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRF-GSRRLGDFWVLDTD 110 (448)
Q Consensus 32 ~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~lyv~GG~~-~~~~~~~~~~~d~~ 110 (448)
.+++.||.. ......+++||+.+++|..++ ++|.+|.+|++++++++||++||.. +...++++++||+.
T Consensus 259 ~l~~~~g~~-~~~~~~v~~yd~~~~~W~~l~---------~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~ 328 (557)
T PHA02713 259 CLVCHDTKY-NVCNPCILVYNINTMEYSVIS---------TIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIE 328 (557)
T ss_pred EEEEecCcc-ccCCCCEEEEeCCCCeEEECC---------CCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECC
Confidence 455555531 223357899999999999987 5788999999999999999999986 34457889999999
Q ss_pred CCcEEEeecCCCCCCcCcccEEEEECCcEEEEEecCCCCccCCceEEEeCCCCceEeecCCCCCCCccCCceeEEeCCEE
Q 013179 111 IWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEKRL 190 (448)
Q Consensus 111 t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~l 190 (448)
+++|..+++ ||.+|..++++++++ +||++||.++....+++++||+.+++|+.++ +||.+|..|+++.++++|
T Consensus 329 ~n~W~~~~~---m~~~R~~~~~~~~~g-~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~---~mp~~r~~~~~~~~~g~I 401 (557)
T PHA02713 329 NKIHVELPP---MIKNRCRFSLAVIDD-TIYAIGGQNGTNVERTIECYTMGDDKWKMLP---DMPIALSSYGMCVLDQYI 401 (557)
T ss_pred CCeEeeCCC---CcchhhceeEEEECC-EEEEECCcCCCCCCceEEEEECCCCeEEECC---CCCcccccccEEEECCEE
Confidence 999999985 999999999999965 9999999987777889999999999999998 999999999999999999
Q ss_pred EEEcccCCCCCc-----cC------ceeeecccccccCCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCCCCCCCc
Q 013179 191 LIYGGRGGGGPI-----MG------DLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWL 259 (448)
Q Consensus 191 yv~GG~~~~~~~-----~~------d~~~~~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~ 259 (448)
|++||....... ++ +...++.+++|||++++|+.++ ++|.+|..+++++.+++|||+||.+...
T Consensus 402 YviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~---~m~~~r~~~~~~~~~~~IYv~GG~~~~~-- 476 (557)
T PHA02713 402 YIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLP---NFWTGTIRPGVVSHKDDIYVVCDIKDEK-- 476 (557)
T ss_pred EEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecC---CCCcccccCcEEEECCEEEEEeCCCCCC--
Confidence 999998643210 00 0112577899999999999998 7899999999999999999999986421
Q ss_pred ccccceeCcEEEEEcCC-CceEEeccCCCCCCCccceEEEEECCEEEEEccCCCCCccCceEEecCCCCcccCceecCC
Q 013179 260 SRYDIYYNDTIILDRLS-AQWKRLPIGNEPPPARAYHSMTCLGSLYLLFGGFDGKSTFGDIWWLVPEEDPIAKRYTESP 337 (448)
Q Consensus 260 ~~~~~~~~~v~~yd~~~-~~W~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~d~w~~~~~yd~~~~~w~~~~ 337 (448)
...+.+++|||.+ ++|+.++++ |.+|..+++++++++||++||.++.. .++.||+.+++|+...
T Consensus 477 ----~~~~~ve~Ydp~~~~~W~~~~~m---~~~r~~~~~~~~~~~iyv~Gg~~~~~-------~~e~yd~~~~~W~~~~ 541 (557)
T PHA02713 477 ----NVKTCIFRYNTNTYNGWELITTT---ESRLSALHTILHDNTIMMLHCYESYM-------LQDTFNVYTYEWNHIC 541 (557)
T ss_pred ----ccceeEEEecCCCCCCeeEcccc---CcccccceeEEECCEEEEEeeeccee-------ehhhcCcccccccchh
Confidence 2335689999999 899999885 56999999999999999999988732 3779999999999873
No 7
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=1.4e-39 Score=315.12 Aligned_cols=274 Identities=24% Similarity=0.375 Sum_probs=215.4
Q ss_pred cCCCcEEeeeecCCCCCCCCCCCCCcceeEEEECCeEEEEcccCC--CCCCCcEEEEECCCCcEEEeecCCCCCCc-Ccc
Q 013179 53 IDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFG--SRRLGDFWVLDTDIWQWSELTSFGDLPSP-RDF 129 (448)
Q Consensus 53 ~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~lyv~GG~~~--~~~~~~~~~~d~~t~~W~~~~~~~~~p~~-r~~ 129 (448)
+...+|..++.... .+|.||.+|++++++++|||+||... ....+++++||+.+++|+.+++.+..|.. +.+
T Consensus 4 ~~~~~W~~~~~~~~-----~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~ 78 (341)
T PLN02153 4 TLQGGWIKVEQKGG-----KGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLG 78 (341)
T ss_pred ccCCeEEEecCCCC-----CCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCc
Confidence 36678999875432 46899999999999999999999854 23457999999999999998864444443 446
Q ss_pred cEEEEECCcEEEEEecCCCCccCCceEEEeCCCCceEeecCC--CCCCCccCCceeEEeCCEEEEEcccCCCCCccCcee
Q 013179 130 AAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVT--GSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLW 207 (448)
Q Consensus 130 ~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~--~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~ 207 (448)
|+++++++ +||||||.+....++++++||+.+++|+.++.. ...|.+|..|+++.++++|||+||....+. .++..
T Consensus 79 ~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~-~~~~~ 156 (341)
T PLN02153 79 VRMVAVGT-KLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGL-MKTPE 156 (341)
T ss_pred eEEEEECC-EEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCc-cCCCc
Confidence 88888865 999999998777788999999999999998721 123789999999999999999999865431 11112
Q ss_pred eecccccccCCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCCCCCCCc-ccccceeCcEEEEEcCCCceEEeccCC
Q 013179 208 ALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWL-SRYDIYYNDTIILDRLSAQWKRLPIGN 286 (448)
Q Consensus 208 ~~~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~-~~~~~~~~~v~~yd~~~~~W~~~~~~~ 286 (448)
.+++++.||+++++|+.++..+..|.+|.+|++++.+++|||+||....... .......+++++||+.+++|++++..+
T Consensus 157 ~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g 236 (341)
T PLN02153 157 RFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTG 236 (341)
T ss_pred ccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccC
Confidence 3567888999999999998766677899999999999999999997531000 000123689999999999999998766
Q ss_pred CCCCCccceEEEEECCEEEEEccCCC---------CCccCceEEecCCCCcccCceecCC
Q 013179 287 EPPPARAYHSMTCLGSLYLLFGGFDG---------KSTFGDIWWLVPEEDPIAKRYTESP 337 (448)
Q Consensus 287 ~~p~~r~~~~~~~~~~~i~v~GG~~~---------~~~~~d~w~~~~~yd~~~~~w~~~~ 337 (448)
..|.+|..|++++++++||||||... ....+++| .||+.+++|+...
T Consensus 237 ~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~----~~d~~~~~W~~~~ 292 (341)
T PLN02153 237 AKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGY----ALDTETLVWEKLG 292 (341)
T ss_pred CCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEE----EEEcCccEEEecc
Confidence 66889999999999999999999742 12346766 4667799999774
No 8
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=3.5e-40 Score=334.51 Aligned_cols=254 Identities=21% Similarity=0.350 Sum_probs=229.4
Q ss_pred ceEEeeeCCCCCCCCCCCCCcEEEEECCcEEEEEcCCC-CCcccCceEEEEcCCCcEEeeeecCCCCCCCCCCCCCccee
Q 013179 3 YWVRASSSDFGGTVPQPRSGHSAVNIGKSKVVVFGGLV-DKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHI 81 (448)
Q Consensus 3 ~W~~~~~~~~~g~~P~~R~~~~~~~~~~~~iyv~GG~~-~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~ 81 (448)
.|..+++ +|.+|..+++++++ +.||++||.+ +...++.+++||+.+++|+.++ +++.+|..|+
T Consensus 312 ~w~~~a~------m~~~r~~~~~~~~~-~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a---------~M~~~R~~~~ 375 (571)
T KOG4441|consen 312 EWSSLAP------MPSPRCRVGVAVLN-GKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVA---------PMNTKRSDFG 375 (571)
T ss_pred cEeecCC------CCcccccccEEEEC-CEEEEEccccCCCcccceEEEecCCCCceeccC---------CccCccccce
Confidence 5777764 99999999998888 7999999999 7889999999999999999977 6899999999
Q ss_pred EEEECCeEEEEcccCCCCCCCcEEEEECCCCcEEEeecCCCCCCcCcccEEEEECCcEEEEEecCCCCc-cCCceEEEeC
Q 013179 82 AVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKK-WLSDVYVLDT 160 (448)
Q Consensus 82 ~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~-~~~~v~~yd~ 160 (448)
++++++.||++||.++...++.+++|||.+++|..+++ |+.+|.+|++++.+ ++||++||.++.. .++++++|||
T Consensus 376 v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~---m~~~r~~~gv~~~~-g~iYi~GG~~~~~~~l~sve~YDP 451 (571)
T KOG4441|consen 376 VAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP---MLTRRSGHGVAVLG-GKLYIIGGGDGSSNCLNSVECYDP 451 (571)
T ss_pred eEEECCEEEEEeccccccccccEEEecCCCCcccccCC---CCcceeeeEEEEEC-CEEEEEcCcCCCccccceEEEEcC
Confidence 99999999999999999999999999999999999985 99999999999995 5999999998877 8999999999
Q ss_pred CCCceEeecCCCCCCCccCCceeEEeCCEEEEEcccCCCCCccCceeeecccccccCCCCceEEecCCCCCCCCCceeEE
Q 013179 161 ISLEWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTI 240 (448)
Q Consensus 161 ~t~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~~~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~ 240 (448)
.+++|+.++ +|+.+|.++.++..+++||++||.++.. .+..++.|||++++|+.+. .++.+|..+.+
T Consensus 452 ~t~~W~~~~---~M~~~R~~~g~a~~~~~iYvvGG~~~~~-------~~~~VE~ydp~~~~W~~v~---~m~~~rs~~g~ 518 (571)
T KOG4441|consen 452 ETNTWTLIA---PMNTRRSGFGVAVLNGKIYVVGGFDGTS-------ALSSVERYDPETNQWTMVA---PMTSPRSAVGV 518 (571)
T ss_pred CCCceeecC---CcccccccceEEEECCEEEEECCccCCC-------ccceEEEEcCCCCceeEcc---cCccccccccE
Confidence 999999999 9999999999999999999999998743 3567999999999999997 78999999999
Q ss_pred EEeCCEEEEEcCCCCCCCcccccceeCcEEEEEcCCCceEEeccCCCCCCCccceEEEE
Q 013179 241 TSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPIGNEPPPARAYHSMTC 299 (448)
Q Consensus 241 ~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~ 299 (448)
++.++++|+.||.+. ..+++.+..|||.+++|+....+ ...|...++++
T Consensus 519 ~~~~~~ly~vGG~~~-------~~~l~~ve~ydp~~d~W~~~~~~---~~~~~~~~~~~ 567 (571)
T KOG4441|consen 519 VVLGGKLYAVGGFDG-------NNNLNTVECYDPETDTWTEVTEP---ESGRGGAGVAV 567 (571)
T ss_pred EEECCEEEEEecccC-------ccccceeEEcCCCCCceeeCCCc---cccccCcceEE
Confidence 999999999999776 45889999999999999999882 23454444443
No 9
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=1.8e-38 Score=308.42 Aligned_cols=279 Identities=22% Similarity=0.300 Sum_probs=214.1
Q ss_pred CCCCCCCCcEEEEECCcEEEEEcCCCCCcccCceEEEEc--CCCcEEeeeecCCCCCCCCCC-CCCcceeEEEECCeEEE
Q 013179 15 TVPQPRSGHSAVNIGKSKVVVFGGLVDKRFLSDVVVYDI--DNKLWFQPECTGNGSNGQVGP-GPRAFHIAVAIDCHMFI 91 (448)
Q Consensus 15 ~~P~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~--~~~~W~~~~~~~~~~~~~~~p-~~R~~h~~~~~~~~lyv 91 (448)
++|.+|..+++++++ ++|||+||... +++++||+ .+++|..++ ++| .+|..|++++++++|||
T Consensus 3 ~lp~~~~~~~~~~~~-~~vyv~GG~~~----~~~~~~d~~~~~~~W~~l~---------~~p~~~R~~~~~~~~~~~iYv 68 (346)
T TIGR03547 3 DLPVGFKNGTGAIIG-DKVYVGLGSAG----TSWYKLDLKKPSKGWQKIA---------DFPGGPRNQAVAAAIDGKLYV 68 (346)
T ss_pred CCCccccCceEEEEC-CEEEEEccccC----CeeEEEECCCCCCCceECC---------CCCCCCcccceEEEECCEEEE
Confidence 489999998888887 79999999732 67999996 578899987 466 58999999999999999
Q ss_pred EcccCCC------CCCCcEEEEECCCCcEEEeecCCCCCCcCcccEEEEECCcEEEEEecCCCCc---------------
Q 013179 92 FGGRFGS------RRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKK--------------- 150 (448)
Q Consensus 92 ~GG~~~~------~~~~~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~--------------- 150 (448)
+||.... ..++++|+||+.+++|++++. .+|.+|..|+++++.+++||++||.+...
T Consensus 69 ~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~--~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~ 146 (346)
T TIGR03547 69 FGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDT--RSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDS 146 (346)
T ss_pred EeCCCCCCCCCcceecccEEEEECCCCEEecCCC--CCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccc
Confidence 9998642 247889999999999999873 36778888877743356999999986421
Q ss_pred -------------------cCCceEEEeCCCCceEeecCCCCCCC-ccCCceeEEeCCEEEEEcccCCCCCccCceeeec
Q 013179 151 -------------------WLSDVYVLDTISLEWMQLPVTGSVPP-PRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALK 210 (448)
Q Consensus 151 -------------------~~~~v~~yd~~t~~W~~~~~~~~~p~-~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~~~ 210 (448)
..+++++||+.+++|+.++ +||. +|..|+++.++++|||+||....+....+++.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~---~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~-- 221 (346)
T TIGR03547 147 EPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLG---ENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQ-- 221 (346)
T ss_pred hhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECc---cCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEE--
Confidence 1378999999999999998 8885 68899999999999999998643321122221
Q ss_pred ccccccCCCCceEEecCCCCCCCCC-------ceeEEEEeCCEEEEEcCCCCCCCcc----------cccceeCcEEEEE
Q 013179 211 GLIEEENETPGWTQLKLPGQAPSSR-------CGHTITSGGHYLLLFGGHGTGGWLS----------RYDIYYNDTIILD 273 (448)
Q Consensus 211 ~~~~yd~~~~~W~~~~~~g~~p~~r-------~~~~~~~~~~~i~v~GG~~~~~~~~----------~~~~~~~~v~~yd 273 (448)
+.||+++++|+.++ .+|.+| .+|++++.+++|||+||.+..+... ........+++||
T Consensus 222 --y~~~~~~~~W~~~~---~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd 296 (346)
T TIGR03547 222 --YLFTGGKLEWNKLP---PLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYA 296 (346)
T ss_pred --EEecCCCceeeecC---CCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEE
Confidence 23466888999987 555544 4566788999999999986321100 0001234689999
Q ss_pred cCCCceEEeccCCCCCCCccceEEEEECCEEEEEccCCCC-CccCceEEe
Q 013179 274 RLSAQWKRLPIGNEPPPARAYHSMTCLGSLYLLFGGFDGK-STFGDIWWL 322 (448)
Q Consensus 274 ~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~-~~~~d~w~~ 322 (448)
+++++|+.+.++ |.+|..+++++++++|||+||.+.. ..+++++.+
T Consensus 297 ~~~~~W~~~~~l---p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~ 343 (346)
T TIGR03547 297 LDNGKWSKVGKL---PQGLAYGVSVSWNNGVLLIGGENSGGKAVTDVYLL 343 (346)
T ss_pred ecCCcccccCCC---CCCceeeEEEEcCCEEEEEeccCCCCCEeeeEEEE
Confidence 999999999875 5588899988999999999998753 456676644
No 10
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=3e-39 Score=329.27 Aligned_cols=241 Identities=13% Similarity=0.173 Sum_probs=211.8
Q ss_pred ceEEeeeCCCCCCCCCCCCCcEEEEECCcEEEEEcCCC-CCcccCceEEEEcCCCcEEeeeecCCCCCCCCCCCCCccee
Q 013179 3 YWVRASSSDFGGTVPQPRSGHSAVNIGKSKVVVFGGLV-DKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHI 81 (448)
Q Consensus 3 ~W~~~~~~~~~g~~P~~R~~~~~~~~~~~~iyv~GG~~-~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~ 81 (448)
+|..+++ +|.+|.+|++++++ ++||++||.+ +...++++++||+.+++|..++ ++|.+|..|+
T Consensus 283 ~W~~l~~------mp~~r~~~~~a~l~-~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~---------~m~~~R~~~~ 346 (557)
T PHA02713 283 EYSVIST------IPNHIINYASAIVD-NEIIIAGGYNFNNPSLNKVYKINIENKIHVELP---------PMIKNRCRFS 346 (557)
T ss_pred eEEECCC------CCccccceEEEEEC-CEEEEEcCCCCCCCccceEEEEECCCCeEeeCC---------CCcchhhcee
Confidence 6888874 89999999888887 7899999985 3456789999999999999876 6899999999
Q ss_pred EEEECCeEEEEcccCCCCCCCcEEEEECCCCcEEEeecCCCCCCcCcccEEEEECCcEEEEEecCCCCc-----------
Q 013179 82 AVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKK----------- 150 (448)
Q Consensus 82 ~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~----------- 150 (448)
+++++++||++||.++...++++++|||.+++|+.+++ ||.+|..+++++++ ++||++||.++..
T Consensus 347 ~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~---mp~~r~~~~~~~~~-g~IYviGG~~~~~~~~~~~~~~~~ 422 (557)
T PHA02713 347 LAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPD---MPIALSSYGMCVLD-QYIYIIGGRTEHIDYTSVHHMNSI 422 (557)
T ss_pred EEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCC---CCcccccccEEEEC-CEEEEEeCCCcccccccccccccc
Confidence 99999999999999876678899999999999999985 99999999999985 5999999986421
Q ss_pred -------cCCceEEEeCCCCceEeecCCCCCCCccCCceeEEeCCEEEEEcccCCCCCccCceeeecccccccCCC-Cce
Q 013179 151 -------WLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENET-PGW 222 (448)
Q Consensus 151 -------~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~~~~~~~yd~~~-~~W 222 (448)
..+++++|||.+++|+.++ +|+.+|..++++.++++|||+||.++... ..+.+++|||++ ++|
T Consensus 423 ~~~~~~~~~~~ve~YDP~td~W~~v~---~m~~~r~~~~~~~~~~~IYv~GG~~~~~~------~~~~ve~Ydp~~~~~W 493 (557)
T PHA02713 423 DMEEDTHSSNKVIRYDTVNNIWETLP---NFWTGTIRPGVVSHKDDIYVVCDIKDEKN------VKTCIFRYNTNTYNGW 493 (557)
T ss_pred cccccccccceEEEECCCCCeEeecC---CCCcccccCcEEEECCEEEEEeCCCCCCc------cceeEEEecCCCCCCe
Confidence 2578999999999999998 99999999999999999999999864321 124578999999 899
Q ss_pred EEecCCCCCCCCCceeEEEEeCCEEEEEcCCCCCCCcccccceeCcEEEEEcCCCceEEeccC
Q 013179 223 TQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPIG 285 (448)
Q Consensus 223 ~~~~~~g~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~ 285 (448)
+.++ .+|.+|..+++++.+++||++||+++. ..+++||+.+++|+.+.+.
T Consensus 494 ~~~~---~m~~~r~~~~~~~~~~~iyv~Gg~~~~----------~~~e~yd~~~~~W~~~~~~ 543 (557)
T PHA02713 494 ELIT---TTESRLSALHTILHDNTIMMLHCYESY----------MLQDTFNVYTYEWNHICHQ 543 (557)
T ss_pred eEcc---ccCcccccceeEEECCEEEEEeeecce----------eehhhcCcccccccchhhh
Confidence 9998 899999999999999999999998651 3789999999999998775
No 11
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=100.00 E-value=1.6e-38 Score=317.67 Aligned_cols=307 Identities=33% Similarity=0.559 Sum_probs=260.3
Q ss_pred CCCCCCCCCCCCcEEEEECCcEEEEEcCCCCCcccCc--eEEEEcCCCcEEeeeecCCCCCCCCCCCCCcceeEEEECCe
Q 013179 11 DFGGTVPQPRSGHSAVNIGKSKVVVFGGLVDKRFLSD--VVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCH 88 (448)
Q Consensus 11 ~~~g~~P~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~--~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~ 88 (448)
+..+..|.+|.+|+++.++ +++|||||........+ +|++|..+..|....+.+. .|.+|++|++++++++
T Consensus 52 ~~~~~~p~~R~~hs~~~~~-~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~------~p~~r~g~~~~~~~~~ 124 (482)
T KOG0379|consen 52 DVLGVGPIPRAGHSAVLIG-NKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGD------EPSPRYGHSLSAVGDK 124 (482)
T ss_pred ccCCCCcchhhccceeEEC-CEEEEECCCCCCCccccceeEEeecCCcccccccccCC------CCCcccceeEEEECCe
Confidence 3457789999999999996 78999999876655555 9999999999999888764 6799999999999999
Q ss_pred EEEEcccCC-CCCCCcEEEEECCCCcEEEeecCCCCCCcCcccEEEEECCcEEEEEecCCCCc-cCCceEEEeCCCCceE
Q 013179 89 MFIFGGRFG-SRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKK-WLSDVYVLDTISLEWM 166 (448)
Q Consensus 89 lyv~GG~~~-~~~~~~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~-~~~~v~~yd~~t~~W~ 166 (448)
||+|||.+. ...+++++.||+.|++|..+.+.+++|.+|.+|+++++++ ++|||||..... ..+++|+||+.+.+|.
T Consensus 125 l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~-~l~vfGG~~~~~~~~ndl~i~d~~~~~W~ 203 (482)
T KOG0379|consen 125 LYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGT-KLVVFGGIGGTGDSLNDLHIYDLETSTWS 203 (482)
T ss_pred EEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECC-EEEEECCccCcccceeeeeeeccccccce
Confidence 999999985 5568899999999999999999999999999999999985 999999998776 8999999999999999
Q ss_pred eecCCCCCCCccCCceeEEeCCEEEEEcccCCCCCccCceeeecccccccCCCCceEEecCCCCCCCCCceeEEEEeCCE
Q 013179 167 QLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHY 246 (448)
Q Consensus 167 ~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~~~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~~~~~ 246 (448)
++.+.|..|.||.+|+++.++++++||||.......++|+|.+ |+.+.+|..+...+..|.+|+.|++++.++.
T Consensus 204 ~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~l------dl~~~~W~~~~~~g~~p~~R~~h~~~~~~~~ 277 (482)
T KOG0379|consen 204 ELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHIL------DLSTWEWKLLPTGGDLPSPRSGHSLTVSGDH 277 (482)
T ss_pred ecccCCCCCCCCCCceEEEECCeEEEEeccccCCceecceEee------ecccceeeeccccCCCCCCcceeeeEEECCE
Confidence 9999999999999999999999999999998666677777777 9999999998888999999999999999999
Q ss_pred EEEEcCCCCCCCcccccceeCcEEEEEcCCCceEEeccCC-CCCCCccceEEEEEC----CEEEEEccCCC-CCccCceE
Q 013179 247 LLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPIGN-EPPPARAYHSMTCLG----SLYLLFGGFDG-KSTFGDIW 320 (448)
Q Consensus 247 i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~-~~p~~r~~~~~~~~~----~~i~v~GG~~~-~~~~~d~w 320 (448)
++|+||..... ...+.++|.||.++..|..+.... ..|.+|..|+.+.+. ....++||... ....++++
T Consensus 278 ~~l~gG~~~~~-----~~~l~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (482)
T KOG0379|consen 278 LLLFGGGTDPK-----QEPLGDLYGLDLETLVWSKVESVGVVRPSPRLGHAAELIDELGKDGLGILGGNQILGERLADVF 352 (482)
T ss_pred EEEEcCCcccc-----cccccccccccccccceeeeeccccccccccccccceeeccCCccceeeecCccccccchhhcc
Confidence 99999987641 125789999999999999999887 678999999988774 23445555332 22445555
Q ss_pred EecCCCCcccCceecC
Q 013179 321 WLVPEEDPIAKRYTES 336 (448)
Q Consensus 321 ~~~~~yd~~~~~w~~~ 336 (448)
.+...-....+.|...
T Consensus 353 ~~~~~~~~~~~~~~~~ 368 (482)
T KOG0379|consen 353 SLQIKLLSRKNEVQEP 368 (482)
T ss_pred cccccccccCCccccc
Confidence 4444444445555444
No 12
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=4.2e-38 Score=308.01 Aligned_cols=282 Identities=20% Similarity=0.267 Sum_probs=215.6
Q ss_pred CCCCCCCCcEEEEECCcEEEEEcCCCCCcccCceEEEEcC--CCcEEeeeecCCCCCCCCCC-CCCcceeEEEECCeEEE
Q 013179 15 TVPQPRSGHSAVNIGKSKVVVFGGLVDKRFLSDVVVYDID--NKLWFQPECTGNGSNGQVGP-GPRAFHIAVAIDCHMFI 91 (448)
Q Consensus 15 ~~P~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~--~~~W~~~~~~~~~~~~~~~p-~~R~~h~~~~~~~~lyv 91 (448)
++|.+|..+++++++ ++|||+||... +.+++||+. +++|..++ ++| .+|.+|++++++++|||
T Consensus 24 ~lP~~~~~~~~~~~~-~~iyv~gG~~~----~~~~~~d~~~~~~~W~~l~---------~~p~~~r~~~~~v~~~~~IYV 89 (376)
T PRK14131 24 DLPVPFKNGTGAIDN-NTVYVGLGSAG----TSWYKLDLNAPSKGWTKIA---------AFPGGPREQAVAAFIDGKLYV 89 (376)
T ss_pred CCCcCccCCeEEEEC-CEEEEEeCCCC----CeEEEEECCCCCCCeEECC---------cCCCCCcccceEEEECCEEEE
Confidence 599999988888777 89999999743 458999987 47899886 344 48999999999999999
Q ss_pred EcccCC------CCCCCcEEEEECCCCcEEEeecCCCCCCcCcccEEEEECCcEEEEEecCCCC----------------
Q 013179 92 FGGRFG------SRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGK---------------- 149 (448)
Q Consensus 92 ~GG~~~------~~~~~~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~---------------- 149 (448)
+||+.. ...++++|+||+.+++|+.+++ ..|.++.+|+++++.+++||++||....
T Consensus 90 ~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~--~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~ 167 (376)
T PRK14131 90 FGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDT--RSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDK 167 (376)
T ss_pred EcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCC--CCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccch
Confidence 999864 1246889999999999999974 3577888888877445699999997532
Q ss_pred ------------------ccCCceEEEeCCCCceEeecCCCCCCC-ccCCceeEEeCCEEEEEcccCCCCCccCceeeec
Q 013179 150 ------------------KWLSDVYVLDTISLEWMQLPVTGSVPP-PRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALK 210 (448)
Q Consensus 150 ------------------~~~~~v~~yd~~t~~W~~~~~~~~~p~-~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~~~ 210 (448)
...+++++||+.+++|+.+. ++|. +|.+|+++.++++|||+||....+....++|.+
T Consensus 168 ~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~---~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~- 243 (376)
T PRK14131 168 TPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAG---ESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQG- 243 (376)
T ss_pred hhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECC---cCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEE-
Confidence 02478999999999999987 7885 788899999999999999975543333333322
Q ss_pred ccccccCCCCceEEecCCCCCCCCCc--------eeEEEEeCCEEEEEcCCCCCCCcc-----cc-----cceeCcEEEE
Q 013179 211 GLIEEENETPGWTQLKLPGQAPSSRC--------GHTITSGGHYLLLFGGHGTGGWLS-----RY-----DIYYNDTIIL 272 (448)
Q Consensus 211 ~~~~yd~~~~~W~~~~~~g~~p~~r~--------~~~~~~~~~~i~v~GG~~~~~~~~-----~~-----~~~~~~v~~y 272 (448)
.||+++++|+.+. .+|.+|. ++.+++.+++|||+||.+...... .. ......+++|
T Consensus 244 ---~~~~~~~~W~~~~---~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~y 317 (376)
T PRK14131 244 ---KFTGNNLKWQKLP---DLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIY 317 (376)
T ss_pred ---EecCCCcceeecC---CCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheE
Confidence 4588999999988 5565553 233567899999999976422100 00 0011357899
Q ss_pred EcCCCceEEeccCCCCCCCccceEEEEECCEEEEEccCCCC-CccCceEEecCC
Q 013179 273 DRLSAQWKRLPIGNEPPPARAYHSMTCLGSLYLLFGGFDGK-STFGDIWWLVPE 325 (448)
Q Consensus 273 d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~-~~~~d~w~~~~~ 325 (448)
|+++++|+.+..+ |.+|..++++.++++|||+||.... ..+++++.+...
T Consensus 318 d~~~~~W~~~~~l---p~~r~~~~av~~~~~iyv~GG~~~~~~~~~~v~~~~~~ 368 (376)
T PRK14131 318 ALVNGKWQKVGEL---PQGLAYGVSVSWNNGVLLIGGETAGGKAVSDVTLLSWD 368 (376)
T ss_pred EecCCcccccCcC---CCCccceEEEEeCCEEEEEcCCCCCCcEeeeEEEEEEc
Confidence 9999999998764 5689999999999999999998643 467787766544
No 13
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=3.6e-39 Score=279.41 Aligned_cols=240 Identities=28% Similarity=0.484 Sum_probs=209.7
Q ss_pred cceEEeeeCCCCC-------CCCCCCCCcEEEEECCcEEEEEcCCCC-CcccCceEEEEcCCCcEEeeeecCCCCCCCCC
Q 013179 2 HYWVRASSSDFGG-------TVPQPRSGHSAVNIGKSKVVVFGGLVD-KRFLSDVVVYDIDNKLWFQPECTGNGSNGQVG 73 (448)
Q Consensus 2 ~~W~~~~~~~~~g-------~~P~~R~~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~ 73 (448)
++|+++++-.... .+|-.|+||+.+.+. +++|++||.++ ....+.+++||+++++|++....+ -.
T Consensus 54 ~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~-d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G------~v 126 (392)
T KOG4693|consen 54 YRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQ-DKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEG------FV 126 (392)
T ss_pred eeEEecCcccccccccCCCCccchhhcCceEEEEc-ceEEEEcCccCcccccceeeeeccccccccccceee------ec
Confidence 6899998721111 357789999999998 89999999976 567889999999999999877665 37
Q ss_pred CCCCcceeEEEECCeEEEEcccCC--CCCCCcEEEEECCCCcEEEeecCCCCCCcCcccEEEEECCcEEEEEecCCCC--
Q 013179 74 PGPRAFHIAVAIDCHMFIFGGRFG--SRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGK-- 149 (448)
Q Consensus 74 p~~R~~h~~~~~~~~lyv~GG~~~--~~~~~~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~-- 149 (448)
|.+|-+|++|++++.+|||||+.. ++..++++++|..|.+|+.+.+.+++|.-|..|++++++ +.+|||||+..+
T Consensus 127 PgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~-~~MYiFGGR~D~~g 205 (392)
T KOG4693|consen 127 PGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVID-GMMYIFGGRSDESG 205 (392)
T ss_pred CCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhhhhhhhhhcc-ceEEEeccccccCC
Confidence 899999999999999999999975 567889999999999999999999999999999999996 599999997532
Q ss_pred -------ccCCceEEEeCCCCceEeecCCCCCCCccCCceeEEeCCEEEEEcccCCCC-CccCceeeecccccccCCCCc
Q 013179 150 -------KWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGG-PIMGDLWALKGLIEEENETPG 221 (448)
Q Consensus 150 -------~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~-~~~~d~~~~~~~~~yd~~~~~ 221 (448)
.+.+.+-.+|+.|..|...++.+-.|..|..|++..++++||+|||+.+.- .. ++++++|||.+..
T Consensus 206 pfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln~H------fndLy~FdP~t~~ 279 (392)
T KOG4693|consen 206 PFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNGTLNVH------FNDLYCFDPKTSM 279 (392)
T ss_pred CccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEcceEEEecccchhhhhh------hcceeecccccch
Confidence 467788999999999999988888899999999999999999999998742 23 3555556999999
Q ss_pred eEEecCCCCCCCCCceeEEEEeCCEEEEEcCCCC
Q 013179 222 WTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGT 255 (448)
Q Consensus 222 W~~~~~~g~~p~~r~~~~~~~~~~~i~v~GG~~~ 255 (448)
|+.+...|..|.+|..+++++.++++|+|||.+-
T Consensus 280 W~~I~~~Gk~P~aRRRqC~~v~g~kv~LFGGTsP 313 (392)
T KOG4693|consen 280 WSVISVRGKYPSARRRQCSVVSGGKVYLFGGTSP 313 (392)
T ss_pred heeeeccCCCCCcccceeEEEECCEEEEecCCCC
Confidence 9999999999999999999999999999999653
No 14
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=5.6e-38 Score=301.71 Aligned_cols=267 Identities=19% Similarity=0.308 Sum_probs=209.8
Q ss_pred CCCCcEEEEECCcEEEEEcCCCCC----------cccCceEEEEcCC--CcEEeeeecCCCCCCCCCCCCCcceeEEEEC
Q 013179 19 PRSGHSAVNIGKSKVVVFGGLVDK----------RFLSDVVVYDIDN--KLWFQPECTGNGSNGQVGPGPRAFHIAVAID 86 (448)
Q Consensus 19 ~R~~~~~~~~~~~~iyv~GG~~~~----------~~~~~~~~yd~~~--~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~ 86 (448)
-+.|+.+.+++ +.|||+||.+.. ...+++++|+... .+|..++ ++|.+|..|++++++
T Consensus 3 ~~~g~~~~~~~-~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~---------~lp~~r~~~~~~~~~ 72 (323)
T TIGR03548 3 GVAGCYAGIIG-DYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDG---------QLPYEAAYGASVSVE 72 (323)
T ss_pred ceeeEeeeEEC-CEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcc---------cCCccccceEEEEEC
Confidence 45678888888 789999998542 2446888886333 2698876 578899989999999
Q ss_pred CeEEEEcccCCCCCCCcEEEEECCCCcE----EEeecCCCCCCcCcccEEEEECCcEEEEEecCCCCccCCceEEEeCCC
Q 013179 87 CHMFIFGGRFGSRRLGDFWVLDTDIWQW----SELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTIS 162 (448)
Q Consensus 87 ~~lyv~GG~~~~~~~~~~~~~d~~t~~W----~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t 162 (448)
++||++||.++...++++++||+.+++| +.++ ++|.+|..|+++++++ +|||+||.......+++++||+.+
T Consensus 73 ~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~---~lp~~~~~~~~~~~~~-~iYv~GG~~~~~~~~~v~~yd~~~ 148 (323)
T TIGR03548 73 NGIYYIGGSNSSERFSSVYRITLDESKEELICETIG---NLPFTFENGSACYKDG-TLYVGGGNRNGKPSNKSYLFNLET 148 (323)
T ss_pred CEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcC---CCCcCccCceEEEECC-EEEEEeCcCCCccCceEEEEcCCC
Confidence 9999999998777789999999999998 4444 6999999999999865 999999986666689999999999
Q ss_pred CceEeecCCCCCC-CccCCceeEEeCCEEEEEcccCCCCCccCceeeecccccccCCCCceEEecCCC--CCCCCCceeE
Q 013179 163 LEWMQLPVTGSVP-PPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPG--QAPSSRCGHT 239 (448)
Q Consensus 163 ~~W~~~~~~~~~p-~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~~~~~~~yd~~~~~W~~~~~~g--~~p~~r~~~~ 239 (448)
++|++++ ++| .+|..|+++.++++|||+||..... ..++++||+++++|+.++... ..|.++..++
T Consensus 149 ~~W~~~~---~~p~~~r~~~~~~~~~~~iYv~GG~~~~~--------~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~ 217 (323)
T TIGR03548 149 QEWFELP---DFPGEPRVQPVCVKLQNELYVFGGGSNIA--------YTDGYKYSPKKNQWQKVADPTTDSEPISLLGAA 217 (323)
T ss_pred CCeeECC---CCCCCCCCcceEEEECCEEEEEcCCCCcc--------ccceEEEecCCCeeEECCCCCCCCCceecccee
Confidence 9999997 676 4789999999999999999986432 244678899999999987432 2344444444
Q ss_pred -EEEeCCEEEEEcCCCCCCCcc-------------------------cccceeCcEEEEEcCCCceEEeccCCCCCCCcc
Q 013179 240 -ITSGGHYLLLFGGHGTGGWLS-------------------------RYDIYYNDTIILDRLSAQWKRLPIGNEPPPARA 293 (448)
Q Consensus 240 -~~~~~~~i~v~GG~~~~~~~~-------------------------~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~ 293 (448)
+++.+++|||+||.+...... ....+.+++++||+.+++|+.++.+ +..+|.
T Consensus 218 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~--p~~~r~ 295 (323)
T TIGR03548 218 SIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNS--PFFARC 295 (323)
T ss_pred EEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcccc--cccccC
Confidence 445678999999986421000 0011247899999999999999864 335899
Q ss_pred ceEEEEECCEEEEEccCCC
Q 013179 294 YHSMTCLGSLYLLFGGFDG 312 (448)
Q Consensus 294 ~~~~~~~~~~i~v~GG~~~ 312 (448)
.++++.++++||++||...
T Consensus 296 ~~~~~~~~~~iyv~GG~~~ 314 (323)
T TIGR03548 296 GAALLLTGNNIFSINGELK 314 (323)
T ss_pred chheEEECCEEEEEecccc
Confidence 9999999999999999754
No 15
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=7.6e-38 Score=292.63 Aligned_cols=308 Identities=31% Similarity=0.583 Sum_probs=257.1
Q ss_pred CcceEEeeeCCCCCCCCCCCCCcEEEEECCcEEEEEcCCCCCcccCceEEEEcCCCcEEeeeecCCCCCCCCCCCCCcce
Q 013179 1 MHYWVRASSSDFGGTVPQPRSGHSAVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFH 80 (448)
Q Consensus 1 ~~~W~~~~~~~~~g~~P~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h 80 (448)
+.+|++++. +.|+.|.||-||-++++. +.|++|||- +....+++++|+..+++|.....-+ +.|.+...|
T Consensus 16 ~~rWrrV~~--~tGPvPrpRHGHRAVaik-ELiviFGGG-NEGiiDELHvYNTatnqWf~PavrG------DiPpgcAA~ 85 (830)
T KOG4152|consen 16 VVRWRRVQQ--STGPVPRPRHGHRAVAIK-ELIVIFGGG-NEGIIDELHVYNTATNQWFAPAVRG------DIPPGCAAF 85 (830)
T ss_pred ccceEEEec--ccCCCCCccccchheeee-eeEEEecCC-cccchhhhhhhccccceeecchhcC------CCCCchhhc
Confidence 368999985 779999999999999998 899999996 3457789999999999999877655 478888889
Q ss_pred eEEEECCeEEEEcccCC-CCCCCcEEEEECCCCcEEEeec----CCCCCCcCcccEEEEECCcEEEEEecCCCC------
Q 013179 81 IAVAIDCHMFIFGGRFG-SRRLGDFWVLDTDIWQWSELTS----FGDLPSPRDFAAASAIGNRKIVMYGGWDGK------ 149 (448)
Q Consensus 81 ~~~~~~~~lyv~GG~~~-~~~~~~~~~~d~~t~~W~~~~~----~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~------ 149 (448)
..+..+.+||+|||+.. .++.||+|.+......|+++.+ .|.+|.+|.+|+.+++++ +.|+|||..++
T Consensus 86 GfvcdGtrilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gn-KcYlFGGLaNdseDpkn 164 (830)
T KOG4152|consen 86 GFVCDGTRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGN-KCYLFGGLANDSEDPKN 164 (830)
T ss_pred ceEecCceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEecc-EeEEeccccccccCccc
Confidence 99999999999999975 7788999999999999999876 466899999999999986 99999997532
Q ss_pred ---ccCCceEEEeCCCC----ceEeecCCCCCCCccCCceeEEe------CCEEEEEcccCCCCCccCceeeeccccccc
Q 013179 150 ---KWLSDVYVLDTISL----EWMQLPVTGSVPPPRCGHTATMV------EKRLLIYGGRGGGGPIMGDLWALKGLIEEE 216 (448)
Q Consensus 150 ---~~~~~v~~yd~~t~----~W~~~~~~~~~p~~r~~~~~~~~------~~~lyv~GG~~~~~~~~~d~~~~~~~~~yd 216 (448)
.+++|+|.+++.-+ .|...-+.|..|.+|..|+++++ ..++||+||..+- .+.|+|.| |
T Consensus 165 NvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~--RLgDLW~L------d 236 (830)
T KOG4152|consen 165 NVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGC--RLGDLWTL------D 236 (830)
T ss_pred ccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEcccccc--cccceeEE------e
Confidence 47999999998743 49998889999999999999998 3489999999764 57888888 9
Q ss_pred CCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCCCC-----CCC--cccccceeCcEEEEEcCCCceEEecc----C
Q 013179 217 NETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGT-----GGW--LSRYDIYYNDTIILDRLSAQWKRLPI----G 285 (448)
Q Consensus 217 ~~~~~W~~~~~~g~~p~~r~~~~~~~~~~~i~v~GG~~~-----~~~--~~~~~~~~~~v~~yd~~~~~W~~~~~----~ 285 (448)
++|-+|.++...|..|.||.-|+++.+++++|||||.-- ... -...=...+.+-++|++++.|..+-. .
T Consensus 237 l~Tl~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed 316 (830)
T KOG4152|consen 237 LDTLTWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLED 316 (830)
T ss_pred cceeecccccccCCCCCCcccccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchheeeeeeccccc
Confidence 999999999999999999999999999999999999521 100 01112356788899999999998732 1
Q ss_pred CCCCCCccceEEEEECCEEEEEccCCCCC-------ccCceEEecCCCC
Q 013179 286 NEPPPARAYHSMTCLGSLYLLFGGFDGKS-------TFGDIWWLVPEED 327 (448)
Q Consensus 286 ~~~p~~r~~~~~~~~~~~i~v~GG~~~~~-------~~~d~w~~~~~yd 327 (448)
...|.+|.+|+++.++.++|+..|+++-. ...|+|.|+-+..
T Consensus 317 ~tiPR~RAGHCAvAigtRlYiWSGRDGYrKAwnnQVCCkDlWyLdTekP 365 (830)
T KOG4152|consen 317 NTIPRARAGHCAVAIGTRLYIWSGRDGYRKAWNNQVCCKDLWYLDTEKP 365 (830)
T ss_pred cccccccccceeEEeccEEEEEeccchhhHhhccccchhhhhhhcccCC
Confidence 22588999999999999999999998632 4467787765543
No 16
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=3.3e-36 Score=309.13 Aligned_cols=269 Identities=16% Similarity=0.152 Sum_probs=221.6
Q ss_pred cEEEEEcCCCCCcccCceEEEEcCCCcEEeeeecCCCCCCCCCCCCCcceeEEEECCeEEEEcccCCCC-CCCcEEEEEC
Q 013179 31 SKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSR-RLGDFWVLDT 109 (448)
Q Consensus 31 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~lyv~GG~~~~~-~~~~~~~~d~ 109 (448)
..+++.||.. .....+..|+..+++|..++. .| .+.+|+++++++.||++||..... ..+++++||+
T Consensus 251 ~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~---------~~-~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~ 318 (534)
T PHA03098 251 SIIYIHITMS--IFTYNYITNYSPLSEINTIID---------IH-YVYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDT 318 (534)
T ss_pred cceEeecccc--hhhceeeecchhhhhcccccC---------cc-ccccceEEEECCEEEEECCCcCCCCeeccEEEEeC
Confidence 3455556653 234456788999999988752 23 245678999999999999997633 4678999999
Q ss_pred CCCcEEEeecCCCCCCcCcccEEEEECCcEEEEEecCCCCccCCceEEEeCCCCceEeecCCCCCCCccCCceeEEeCCE
Q 013179 110 DIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEKR 189 (448)
Q Consensus 110 ~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~ 189 (448)
.+++|..++ ++|.+|..|+++++++ +||++||.......+++++||+.+++|+.++ ++|.+|.+|+++.++++
T Consensus 319 ~~~~W~~~~---~~~~~R~~~~~~~~~~-~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~---~lp~~r~~~~~~~~~~~ 391 (534)
T PHA03098 319 KTKSWNKVP---ELIYPRKNPGVTVFNN-RIYVIGGIYNSISLNTVESWKPGESKWREEP---PLIFPRYNPCVVNVNNL 391 (534)
T ss_pred CCCeeeECC---CCCcccccceEEEECC-EEEEEeCCCCCEecceEEEEcCCCCceeeCC---CcCcCCccceEEEECCE
Confidence 999999987 4999999999999865 9999999987777899999999999999998 89999999999999999
Q ss_pred EEEEcccCCCCCccCceeeecccccccCCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCCCCCCCcccccceeCcE
Q 013179 190 LLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDT 269 (448)
Q Consensus 190 lyv~GG~~~~~~~~~d~~~~~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v 269 (448)
|||+||...... .++.++.||+.+++|+.++ .+|.+|.+|+++..+++|||+||.+.... ...++++
T Consensus 392 iYv~GG~~~~~~------~~~~v~~yd~~t~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~~----~~~~~~v 458 (534)
T PHA03098 392 IYVIGGISKNDE------LLKTVECFSLNTNKWSKGS---PLPISHYGGCAIYHDGKIYVIGGISYIDN----IKVYNIV 458 (534)
T ss_pred EEEECCcCCCCc------ccceEEEEeCCCCeeeecC---CCCccccCceEEEECCEEEEECCccCCCC----CcccceE
Confidence 999999755432 2467788899999999987 78999999999999999999999865321 1235679
Q ss_pred EEEEcCCCceEEeccCCCCCCCccceEEEEECCEEEEEccCCCCCccCceEEecCCCCcccCceecCCC
Q 013179 270 IILDRLSAQWKRLPIGNEPPPARAYHSMTCLGSLYLLFGGFDGKSTFGDIWWLVPEEDPIAKRYTESPP 338 (448)
Q Consensus 270 ~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~d~w~~~~~yd~~~~~w~~~~~ 338 (448)
++||+.+++|+.++.+ |.+|..++++.++++|||+||.+.....+++ ..||+.+++|+..+.
T Consensus 459 ~~yd~~~~~W~~~~~~---~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v----~~yd~~~~~W~~~~~ 520 (534)
T PHA03098 459 ESYNPVTNKWTELSSL---NFPRINASLCIFNNKIYVVGGDKYEYYINEI----EVYDDKTNTWTLFCK 520 (534)
T ss_pred EEecCCCCceeeCCCC---CcccccceEEEECCEEEEEcCCcCCccccee----EEEeCCCCEEEecCC
Confidence 9999999999999875 4579999999999999999999876556664 467888999998753
No 17
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=1.3e-35 Score=304.69 Aligned_cols=235 Identities=19% Similarity=0.260 Sum_probs=201.6
Q ss_pred CCCcEEEEECCcEEEEEcCCCCC-cccCceEEEEcCCCcEEeeeecCCCCCCCCCCCCCcceeEEEECCeEEEEcccCCC
Q 013179 20 RSGHSAVNIGKSKVVVFGGLVDK-RFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGS 98 (448)
Q Consensus 20 R~~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~lyv~GG~~~~ 98 (448)
+..|++++++ +.||++||.... ...++++.||+.+++|..++ ++|.+|.+|++++++++||++||....
T Consensus 285 ~~~~~~~~~~-~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~---------~~~~~R~~~~~~~~~~~lyv~GG~~~~ 354 (534)
T PHA03098 285 VYCFGSVVLN-NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVP---------ELIYPRKNPGVTVFNNRIYVIGGIYNS 354 (534)
T ss_pred cccceEEEEC-CEEEEECCCcCCCCeeccEEEEeCCCCeeeECC---------CCCcccccceEEEECCEEEEEeCCCCC
Confidence 4455777777 789999998653 35679999999999998876 578899999999999999999999876
Q ss_pred CCCCcEEEEECCCCcEEEeecCCCCCCcCcccEEEEECCcEEEEEecCCCC-ccCCceEEEeCCCCceEeecCCCCCCCc
Q 013179 99 RRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGK-KWLSDVYVLDTISLEWMQLPVTGSVPPP 177 (448)
Q Consensus 99 ~~~~~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~-~~~~~v~~yd~~t~~W~~~~~~~~~p~~ 177 (448)
...+++++||+.+++|+.+++ +|.+|..|+++++++ +||++||.... ..++++++||+.+++|+.++ ++|.+
T Consensus 355 ~~~~~v~~yd~~~~~W~~~~~---lp~~r~~~~~~~~~~-~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~---~~p~~ 427 (534)
T PHA03098 355 ISLNTVESWKPGESKWREEPP---LIFPRYNPCVVNVNN-LIYVIGGISKNDELLKTVECFSLNTNKWSKGS---PLPIS 427 (534)
T ss_pred EecceEEEEcCCCCceeeCCC---cCcCCccceEEEECC-EEEEECCcCCCCcccceEEEEeCCCCeeeecC---CCCcc
Confidence 778899999999999999874 999999999988865 99999997533 45789999999999999998 89999
Q ss_pred cCCceeEEeCCEEEEEcccCCCCCccCceeeecccccccCCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCCCCCC
Q 013179 178 RCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGG 257 (448)
Q Consensus 178 r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~~~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~~~~~i~v~GG~~~~~ 257 (448)
|.+|+++.++++|||+||....... ..++.++.||+++++|+.++ .+|.+|..++++..+++|||+||....
T Consensus 428 r~~~~~~~~~~~iyv~GG~~~~~~~----~~~~~v~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~~~iyv~GG~~~~- 499 (534)
T PHA03098 428 HYGGCAIYHDGKIYVIGGISYIDNI----KVYNIVESYNPVTNKWTELS---SLNFPRINASLCIFNNKIYVVGGDKYE- 499 (534)
T ss_pred ccCceEEEECCEEEEECCccCCCCC----cccceEEEecCCCCceeeCC---CCCcccccceEEEECCEEEEEcCCcCC-
Confidence 9999999999999999997643311 12455888999999999987 678889999999999999999998753
Q ss_pred CcccccceeCcEEEEEcCCCceEEeccC
Q 013179 258 WLSRYDIYYNDTIILDRLSAQWKRLPIG 285 (448)
Q Consensus 258 ~~~~~~~~~~~v~~yd~~~~~W~~~~~~ 285 (448)
...+++++||+.+++|+.+...
T Consensus 500 ------~~~~~v~~yd~~~~~W~~~~~~ 521 (534)
T PHA03098 500 ------YYINEIEVYDDKTNTWTLFCKF 521 (534)
T ss_pred ------cccceeEEEeCCCCEEEecCCC
Confidence 2468999999999999999764
No 18
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=100.00 E-value=1.2e-35 Score=297.12 Aligned_cols=251 Identities=41% Similarity=0.700 Sum_probs=223.8
Q ss_pred CCCCCCcceeEEEECCeEEEEcccCCCCCCCc--EEEEECCCCcEEEeecCCCCCCcCcccEEEEECCcEEEEEecCCC-
Q 013179 72 VGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGD--FWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDG- 148 (448)
Q Consensus 72 ~~p~~R~~h~~~~~~~~lyv~GG~~~~~~~~~--~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~- 148 (448)
..|.+|+.|+++.+++++|||||........+ +|+||..+..|......+..|.+|.+|+++++++ +||+|||.+.
T Consensus 56 ~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~-~l~lfGG~~~~ 134 (482)
T KOG0379|consen 56 VGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGD-KLYLFGGTDKK 134 (482)
T ss_pred CCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECC-eEEEEccccCC
Confidence 46999999999999999999999987666555 9999999999999999999999999999999976 9999999984
Q ss_pred CccCCceEEEeCCCCceEeecCCCCCCCccCCceeEEeCCEEEEEcccCCCCCccCceeeecccccccCCCCceEEecCC
Q 013179 149 KKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLP 228 (448)
Q Consensus 149 ~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~~~~~~~yd~~~~~W~~~~~~ 228 (448)
...+++++.||+.+.+|..+.+.+.+|++|.+|+++.+++++|||||....+...|| +++||+++.+|.++.+.
T Consensus 135 ~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~nd------l~i~d~~~~~W~~~~~~ 208 (482)
T KOG0379|consen 135 YRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLND------LHIYDLETSTWSELDTQ 208 (482)
T ss_pred CCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceee------eeeeccccccceecccC
Confidence 566899999999999999999999999999999999999999999999887654444 55559999999999999
Q ss_pred CCCCCCCceeEEEEeCCEEEEEcCCCCCCCcccccceeCcEEEEEcCCCceEEeccCCCCCCCccceEEEEECCEEEEEc
Q 013179 229 GQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPIGNEPPPARAYHSMTCLGSLYLLFG 308 (448)
Q Consensus 229 g~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~i~v~G 308 (448)
|..|.||.+|++++.+++++||||.... +.+++|+|+||+.+.+|.++...+..|.+|++|+++..+.+++|+|
T Consensus 209 g~~P~pR~gH~~~~~~~~~~v~gG~~~~------~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~~~~~~l~g 282 (482)
T KOG0379|consen 209 GEAPSPRYGHAMVVVGNKLLVFGGGDDG------DVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTVSGDHLLLFG 282 (482)
T ss_pred CCCCCCCCCceEEEECCeEEEEeccccC------CceecceEeeecccceeeeccccCCCCCCcceeeeEEECCEEEEEc
Confidence 9999999999999999999999998732 5799999999999999999998888999999999999999999999
Q ss_pred cCCCC--CccCceEEecCCCCcccCceecCCCC
Q 013179 309 GFDGK--STFGDIWWLVPEEDPIAKRYTESPPK 339 (448)
Q Consensus 309 G~~~~--~~~~d~w~~~~~yd~~~~~w~~~~~~ 339 (448)
|.... ..+.+.|.|... +..|......
T Consensus 283 G~~~~~~~~l~~~~~l~~~----~~~w~~~~~~ 311 (482)
T KOG0379|consen 283 GGTDPKQEPLGDLYGLDLE----TLVWSKVESV 311 (482)
T ss_pred CCccccccccccccccccc----ccceeeeecc
Confidence 98874 257887755544 7888776433
No 19
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=5.7e-34 Score=286.62 Aligned_cols=209 Identities=19% Similarity=0.288 Sum_probs=184.8
Q ss_pred ECCcEEEEEcCCCCCcccCceEEEEcCCCcEEeeeecCCCCCCCCCCCCCcceeEEEECCeEEEEcccCCCCCCCcEEEE
Q 013179 28 IGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVL 107 (448)
Q Consensus 28 ~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~~ 107 (448)
++ +.||++||.++....+.+++||+.+++|..++ ++|.+|..|++++++++||++||..+. +.+++|
T Consensus 270 ~~-~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~---------~m~~~r~~~~~v~~~~~iYviGG~~~~---~sve~y 336 (480)
T PHA02790 270 VG-EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIP---------PMNSPRLYASGVPANNKLYVVGGLPNP---TSVERW 336 (480)
T ss_pred EC-CEEEEEcCCCCCCcCCeEEEEECCCCEEEECC---------CCCchhhcceEEEECCEEEEECCcCCC---CceEEE
Confidence 45 79999999977677889999999999999987 578999999999999999999997542 569999
Q ss_pred ECCCCcEEEeecCCCCCCcCcccEEEEECCcEEEEEecCCCCccCCceEEEeCCCCceEeecCCCCCCCccCCceeEEeC
Q 013179 108 DTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVE 187 (448)
Q Consensus 108 d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~ 187 (448)
|+.+++|..+++ ||.+|..|++++++ ++||++||.++. .+.+++||+.+++|+.++ +|+.+|..|+++.++
T Consensus 337 dp~~n~W~~~~~---l~~~r~~~~~~~~~-g~IYviGG~~~~--~~~ve~ydp~~~~W~~~~---~m~~~r~~~~~~~~~ 407 (480)
T PHA02790 337 FHGDAAWVNMPS---LLKPRCNPAVASIN-NVIYVIGGHSET--DTTTEYLLPNHDQWQFGP---STYYPHYKSCALVFG 407 (480)
T ss_pred ECCCCeEEECCC---CCCCCcccEEEEEC-CEEEEecCcCCC--CccEEEEeCCCCEEEeCC---CCCCccccceEEEEC
Confidence 999999999985 99999999999985 499999998643 367999999999999998 899999999999999
Q ss_pred CEEEEEcccCCCCCccCceeeecccccccCCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCCCCCCCcccccceeC
Q 013179 188 KRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYN 267 (448)
Q Consensus 188 ~~lyv~GG~~~~~~~~~d~~~~~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~ 267 (448)
++|||+||. ++.||+++++|+.++ ++|.+|..+++++.+++|||+||.+.. ...+
T Consensus 408 ~~IYv~GG~---------------~e~ydp~~~~W~~~~---~m~~~r~~~~~~v~~~~IYviGG~~~~-------~~~~ 462 (480)
T PHA02790 408 RRLFLVGRN---------------AEFYCESSNTWTLID---DPIYPRDNPELIIVDNKLLLIGGFYRG-------SYID 462 (480)
T ss_pred CEEEEECCc---------------eEEecCCCCcEeEcC---CCCCCccccEEEEECCEEEEECCcCCC-------cccc
Confidence 999999983 256899999999998 789999999999999999999998642 2357
Q ss_pred cEEEEEcCCCceEEec
Q 013179 268 DTIILDRLSAQWKRLP 283 (448)
Q Consensus 268 ~v~~yd~~~~~W~~~~ 283 (448)
.+++||+.+++|+...
T Consensus 463 ~ve~Yd~~~~~W~~~~ 478 (480)
T PHA02790 463 TIEVYNNRTYSWNIWD 478 (480)
T ss_pred eEEEEECCCCeEEecC
Confidence 8999999999998653
No 20
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=1.2e-33 Score=271.63 Aligned_cols=231 Identities=19% Similarity=0.281 Sum_probs=182.8
Q ss_pred ceEEeeeCCCCCCCCCCCCCcEEEEECCcEEEEEcCCCCCcccCceEEEEcCCCcE----EeeeecCCCCCCCCCCCCCc
Q 013179 3 YWVRASSSDFGGTVPQPRSGHSAVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLW----FQPECTGNGSNGQVGPGPRA 78 (448)
Q Consensus 3 ~W~~~~~~~~~g~~P~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W----~~~~~~~~~~~~~~~p~~R~ 78 (448)
+|.+++ ++|.+|..|+++.++ ++||++||.++...++++++||+.+++| ..++ ++|.+|.
T Consensus 52 ~W~~~~------~lp~~r~~~~~~~~~-~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~---------~lp~~~~ 115 (323)
T TIGR03548 52 KWVKDG------QLPYEAAYGASVSVE-NGIYYIGGSNSSERFSSVYRITLDESKEELICETIG---------NLPFTFE 115 (323)
T ss_pred eEEEcc------cCCccccceEEEEEC-CEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcC---------CCCcCcc
Confidence 587776 489999888888886 7899999998777889999999999998 3333 5789999
Q ss_pred ceeEEEECCeEEEEcccCCCCCCCcEEEEECCCCcEEEeecCCCCC-CcCcccEEEEECCcEEEEEecCCCCccCCceEE
Q 013179 79 FHIAVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLP-SPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYV 157 (448)
Q Consensus 79 ~h~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~p-~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~ 157 (448)
.|++++++++|||+||......++++++||+.+++|+++++ +| .+|..|+++++++ +|||+||.+... ..++++
T Consensus 116 ~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~---~p~~~r~~~~~~~~~~-~iYv~GG~~~~~-~~~~~~ 190 (323)
T TIGR03548 116 NGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPD---FPGEPRVQPVCVKLQN-ELYVFGGGSNIA-YTDGYK 190 (323)
T ss_pred CceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCC---CCCCCCCcceEEEECC-EEEEEcCCCCcc-ccceEE
Confidence 99999999999999998766668899999999999999974 66 4788888888865 999999987543 467899
Q ss_pred EeCCCCceEeecCCC--CCCCccCCceeEEe-CCEEEEEcccCCCCC-----cc--------------------Cceeee
Q 013179 158 LDTISLEWMQLPVTG--SVPPPRCGHTATMV-EKRLLIYGGRGGGGP-----IM--------------------GDLWAL 209 (448)
Q Consensus 158 yd~~t~~W~~~~~~~--~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~-----~~--------------------~d~~~~ 209 (448)
||+.+++|+.++... ..|..+..++++.+ +++|||+||.+.... .. ...-..
T Consensus 191 yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (323)
T TIGR03548 191 YSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWN 270 (323)
T ss_pred EecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcC
Confidence 999999999997321 23444445554444 789999999864210 00 000012
Q ss_pred cccccccCCCCceEEecCCCCCC-CCCceeEEEEeCCEEEEEcCCCCCC
Q 013179 210 KGLIEEENETPGWTQLKLPGQAP-SSRCGHTITSGGHYLLLFGGHGTGG 257 (448)
Q Consensus 210 ~~~~~yd~~~~~W~~~~~~g~~p-~~r~~~~~~~~~~~i~v~GG~~~~~ 257 (448)
+.+++||+.+++|+.++ .+| .+|..++++..+++||++||....+
T Consensus 271 ~~v~~yd~~~~~W~~~~---~~p~~~r~~~~~~~~~~~iyv~GG~~~pg 316 (323)
T TIGR03548 271 RKILIYNVRTGKWKSIG---NSPFFARCGAALLLTGNNIFSINGELKPG 316 (323)
T ss_pred ceEEEEECCCCeeeEcc---cccccccCchheEEECCEEEEEeccccCC
Confidence 56899999999999987 455 6899999999999999999976543
No 21
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=1.8e-33 Score=282.96 Aligned_cols=211 Identities=16% Similarity=0.230 Sum_probs=184.3
Q ss_pred EEEECCeEEEEcccCCCCCCCcEEEEECCCCcEEEeecCCCCCCcCcccEEEEECCcEEEEEecCCCCccCCceEEEeCC
Q 013179 82 AVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTI 161 (448)
Q Consensus 82 ~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~ 161 (448)
++..++.||++||.++....+.+++||+.+++|..+++ ||.+|..+++++++ ++||++||.+.. +++++||+.
T Consensus 267 ~~~~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~---m~~~r~~~~~v~~~-~~iYviGG~~~~---~sve~ydp~ 339 (480)
T PHA02790 267 STHVGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPP---MNSPRLYASGVPAN-NKLYVVGGLPNP---TSVERWFHG 339 (480)
T ss_pred eEEECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCC---CCchhhcceEEEEC-CEEEEECCcCCC---CceEEEECC
Confidence 34589999999998776677889999999999999985 99999999998886 499999997542 679999999
Q ss_pred CCceEeecCCCCCCCccCCceeEEeCCEEEEEcccCCCCCccCceeeecccccccCCCCceEEecCCCCCCCCCceeEEE
Q 013179 162 SLEWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTIT 241 (448)
Q Consensus 162 t~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~~~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~ 241 (448)
+++|+.++ +||.+|..|+++.++++||++||.... .+.+++|||++++|+.++ ++|.+|..|+++
T Consensus 340 ~n~W~~~~---~l~~~r~~~~~~~~~g~IYviGG~~~~---------~~~ve~ydp~~~~W~~~~---~m~~~r~~~~~~ 404 (480)
T PHA02790 340 DAAWVNMP---SLLKPRCNPAVASINNVIYVIGGHSET---------DTTTEYLLPNHDQWQFGP---STYYPHYKSCAL 404 (480)
T ss_pred CCeEEECC---CCCCCCcccEEEEECCEEEEecCcCCC---------CccEEEEeCCCCEEEeCC---CCCCccccceEE
Confidence 99999998 999999999999999999999997532 156788999999999988 789999999999
Q ss_pred EeCCEEEEEcCCCCCCCcccccceeCcEEEEEcCCCceEEeccCCCCCCCccceEEEEECCEEEEEccCCCCCccCceEE
Q 013179 242 SGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPIGNEPPPARAYHSMTCLGSLYLLFGGFDGKSTFGDIWW 321 (448)
Q Consensus 242 ~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~d~w~ 321 (448)
+.+++|||+||. +.+||+++++|+.++++ |.+|..+++++++++|||+||.++....+.
T Consensus 405 ~~~~~IYv~GG~---------------~e~ydp~~~~W~~~~~m---~~~r~~~~~~v~~~~IYviGG~~~~~~~~~--- 463 (480)
T PHA02790 405 VFGRRLFLVGRN---------------AEFYCESSNTWTLIDDP---IYPRDNPELIIVDNKLLLIGGFYRGSYIDT--- 463 (480)
T ss_pred EECCEEEEECCc---------------eEEecCCCCcEeEcCCC---CCCccccEEEEECCEEEEECCcCCCcccce---
Confidence 999999999973 56899999999999875 558999999999999999999875444444
Q ss_pred ecCCCCcccCceecC
Q 013179 322 LVPEEDPIAKRYTES 336 (448)
Q Consensus 322 ~~~~yd~~~~~w~~~ 336 (448)
++.|||.+++|+..
T Consensus 464 -ve~Yd~~~~~W~~~ 477 (480)
T PHA02790 464 -IEVYNNRTYSWNIW 477 (480)
T ss_pred -EEEEECCCCeEEec
Confidence 66899999999865
No 22
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=100.00 E-value=6.9e-34 Score=260.35 Aligned_cols=255 Identities=28% Similarity=0.550 Sum_probs=210.9
Q ss_pred CCCCCCCCcEEEEE-CCcEEEEEcCC--CCC--cccCceEEEEcCCCcEEeeeecCCCCCCCCCCCCCcceeEEEEC-Ce
Q 013179 15 TVPQPRSGHSAVNI-GKSKVVVFGGL--VDK--RFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAID-CH 88 (448)
Q Consensus 15 ~~P~~R~~~~~~~~-~~~~iyv~GG~--~~~--~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~-~~ 88 (448)
+.|.||.+.++++- .++-+++|||- +++ ...+|+|.||+.++.|+.+.. +..|.||+.|.++++. +.
T Consensus 62 ~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~s-------pn~P~pRsshq~va~~s~~ 134 (521)
T KOG1230|consen 62 PPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVS-------PNAPPPRSSHQAVAVPSNI 134 (521)
T ss_pred CCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEecc-------CCCcCCCccceeEEeccCe
Confidence 46889998888774 34679999995 332 357899999999999999874 3579999999999986 89
Q ss_pred EEEEcccCCC------CCCCcEEEEECCCCcEEEeecCCCCCCcCcccEEEEECCcEEEEEecCCCC----ccCCceEEE
Q 013179 89 MFIFGGRFGS------RRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGK----KWLSDVYVL 158 (448)
Q Consensus 89 lyv~GG~~~~------~~~~~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~----~~~~~v~~y 158 (448)
||+|||.... ...+|+|.||+.+++|+++... ..|.+|.+|-|++..+ +|+||||+... .++||||+|
T Consensus 135 l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~-g~PS~RSGHRMvawK~-~lilFGGFhd~nr~y~YyNDvy~F 212 (521)
T KOG1230|consen 135 LWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFG-GGPSPRSGHRMVAWKR-QLILFGGFHDSNRDYIYYNDVYAF 212 (521)
T ss_pred EEEeccccCCcchhhhhhhhheeeeeeccchheeeccC-CCCCCCccceeEEeee-eEEEEcceecCCCceEEeeeeEEE
Confidence 9999997431 1267899999999999999864 4899999999999965 99999997533 479999999
Q ss_pred eCCCCceEeecCCCCCCCccCCceeEEe-CCEEEEEcccCC--------CCCccCceeeecccccccCCC-----CceEE
Q 013179 159 DTISLEWMQLPVTGSVPPPRCGHTATMV-EKRLLIYGGRGG--------GGPIMGDLWALKGLIEEENET-----PGWTQ 224 (448)
Q Consensus 159 d~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~--------~~~~~~d~~~~~~~~~yd~~~-----~~W~~ 224 (448)
|+++.+|.++.++|..|.||++|++.+. ++.|||+||+.. .+...+|+|.| ++++ -.|+.
T Consensus 213 dLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L------~p~~~~~dKw~W~k 286 (521)
T KOG1230|consen 213 DLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLL------KPEDGREDKWVWTK 286 (521)
T ss_pred eccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeee------cCCcCCCcceeEee
Confidence 9999999999998889999999999998 899999999863 34567777777 6666 78999
Q ss_pred ecCCCCCCCCCceeEEEEe-CCEEEEEcCCCCCC--CcccccceeCcEEEEEcCCCceEEecc
Q 013179 225 LKLPGQAPSSRCGHTITSG-GHYLLLFGGHGTGG--WLSRYDIYYNDTIILDRLSAQWKRLPI 284 (448)
Q Consensus 225 ~~~~g~~p~~r~~~~~~~~-~~~i~v~GG~~~~~--~~~~~~~~~~~v~~yd~~~~~W~~~~~ 284 (448)
+...|..|.||.++++++. +++.+.|||.-+-. .-.-...++||+|.||+..++|...+.
T Consensus 287 vkp~g~kPspRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~ql 349 (521)
T KOG1230|consen 287 VKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEGQL 349 (521)
T ss_pred ccCCCCCCCCCCceeEEEecCCceEEecceecccccchhhhhhhhhhhhheecccchhhHhhh
Confidence 9999999999999999985 45999999975411 011124588999999999999997643
No 23
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=1.2e-32 Score=267.54 Aligned_cols=241 Identities=24% Similarity=0.341 Sum_probs=185.6
Q ss_pred cceEEeeeCCCCCCCC-CCCCCcEEEEECCcEEEEEcCCCCC------cccCceEEEEcCCCcEEeeeecCCCCCCCCCC
Q 013179 2 HYWVRASSSDFGGTVP-QPRSGHSAVNIGKSKVVVFGGLVDK------RFLSDVVVYDIDNKLWFQPECTGNGSNGQVGP 74 (448)
Q Consensus 2 ~~W~~~~~~~~~g~~P-~~R~~~~~~~~~~~~iyv~GG~~~~------~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p 74 (448)
.+|+.+++ +| .+|.+|++++++ ++||++||.... ..++++++||+.+++|+.++. .+|
T Consensus 41 ~~W~~l~~------~p~~~R~~~~~~~~~-~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~--------~~p 105 (346)
T TIGR03547 41 KGWQKIAD------FPGGPRNQAVAAAID-GKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDT--------RSP 105 (346)
T ss_pred CCceECCC------CCCCCcccceEEEEC-CEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCC--------CCC
Confidence 46888874 78 589999988888 789999998532 257899999999999999852 257
Q ss_pred CCCcceeEE-EECCeEEEEcccCCCC----------------------------------CCCcEEEEECCCCcEEEeec
Q 013179 75 GPRAFHIAV-AIDCHMFIFGGRFGSR----------------------------------RLGDFWVLDTDIWQWSELTS 119 (448)
Q Consensus 75 ~~R~~h~~~-~~~~~lyv~GG~~~~~----------------------------------~~~~~~~~d~~t~~W~~~~~ 119 (448)
.+|.+|+++ +++++||++||.+... .++++++||+.+++|+.+++
T Consensus 106 ~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~ 185 (346)
T TIGR03547 106 VGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGE 185 (346)
T ss_pred CcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECcc
Confidence 778888887 6899999999986321 14789999999999999974
Q ss_pred CCCCCC-cCcccEEEEECCcEEEEEecCCCCc-cCCceEEEe--CCCCceEeecCCCCCCCcc-------CCceeEEeCC
Q 013179 120 FGDLPS-PRDFAAASAIGNRKIVMYGGWDGKK-WLSDVYVLD--TISLEWMQLPVTGSVPPPR-------CGHTATMVEK 188 (448)
Q Consensus 120 ~~~~p~-~r~~~~~~~~~~~~iyv~GG~~~~~-~~~~v~~yd--~~t~~W~~~~~~~~~p~~r-------~~~~~~~~~~ 188 (448)
||. +|..++++++++ +|||+||..... ...+++.|+ +++++|+.++ +||.+| .+|+++.+++
T Consensus 186 ---~p~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~---~m~~~r~~~~~~~~~~~a~~~~~ 258 (346)
T TIGR03547 186 ---NPFLGTAGSAIVHKGN-KLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLP---PLPPPKSSSQEGLAGAFAGISNG 258 (346)
T ss_pred ---CCCCcCCCceEEEECC-EEEEEeeeeCCCccchheEEEEecCCCceeeecC---CCCCCCCCccccccEEeeeEECC
Confidence 885 688888888865 999999976433 234565555 5778999998 777665 3555778899
Q ss_pred EEEEEcccCCCCCc----cCc------eeeecccccccCCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCCCCCCC
Q 013179 189 RLLIYGGRGGGGPI----MGD------LWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGW 258 (448)
Q Consensus 189 ~lyv~GG~~~~~~~----~~d------~~~~~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~~~~~i~v~GG~~~~~~ 258 (448)
+|||+||....... ... ...+..+++||+++++|+.+. .+|.+|..+++++.+++|||+||.+..+
T Consensus 259 ~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~---~lp~~~~~~~~~~~~~~iyv~GG~~~~~- 334 (346)
T TIGR03547 259 VLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVG---KLPQGLAYGVSVSWNNGVLLIGGENSGG- 334 (346)
T ss_pred EEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccC---CCCCCceeeEEEEcCCEEEEEeccCCCC-
Confidence 99999998632110 000 012346789999999999998 7899999999889999999999987643
Q ss_pred cccccceeCcEEEEE
Q 013179 259 LSRYDIYYNDTIILD 273 (448)
Q Consensus 259 ~~~~~~~~~~v~~yd 273 (448)
..+++++.|-
T Consensus 335 -----~~~~~v~~~~ 344 (346)
T TIGR03547 335 -----KAVTDVYLLS 344 (346)
T ss_pred -----CEeeeEEEEE
Confidence 4667887764
No 24
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=100.00 E-value=2.2e-33 Score=257.10 Aligned_cols=256 Identities=23% Similarity=0.429 Sum_probs=211.3
Q ss_pred CCCCCCcceeEEEE--CCeEEEEcccC--C--CCCCCcEEEEECCCCcEEEeecCCCCCCcCcccEEEEECCcEEEEEec
Q 013179 72 VGPGPRAFHIAVAI--DCHMFIFGGRF--G--SRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGG 145 (448)
Q Consensus 72 ~~p~~R~~h~~~~~--~~~lyv~GG~~--~--~~~~~~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG 145 (448)
+.|+||+++++++. .+.|++|||.- + ....+|++.||+.+++|+++.+ .+.|.+|..|+++++..+.+|+|||
T Consensus 62 ~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~s-pn~P~pRsshq~va~~s~~l~~fGG 140 (521)
T KOG1230|consen 62 PPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVS-PNAPPPRSSHQAVAVPSNILWLFGG 140 (521)
T ss_pred CCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEecc-CCCcCCCccceeEEeccCeEEEecc
Confidence 67999999999875 56899999963 3 2347899999999999999975 4689999999999998779999999
Q ss_pred CCCC------ccCCceEEEeCCCCceEeecCCCCCCCccCCceeEEeCCEEEEEcccCCCCCccCceeeecccccccCCC
Q 013179 146 WDGK------KWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENET 219 (448)
Q Consensus 146 ~~~~------~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~~~~~~~yd~~~ 219 (448)
--.. ....++|.||+.+++|+++...| .|.||++|-|++..++|+||||.... ..+..++|++++||+++
T Consensus 141 EfaSPnq~qF~HYkD~W~fd~~trkweql~~~g-~PS~RSGHRMvawK~~lilFGGFhd~---nr~y~YyNDvy~FdLdt 216 (521)
T KOG1230|consen 141 EFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGG-GPSPRSGHRMVAWKRQLILFGGFHDS---NRDYIYYNDVYAFDLDT 216 (521)
T ss_pred ccCCcchhhhhhhhheeeeeeccchheeeccCC-CCCCCccceeEEeeeeEEEEcceecC---CCceEEeeeeEEEeccc
Confidence 5321 24679999999999999998765 79999999999999999999998764 35556677778889999
Q ss_pred CceEEecCCCCCCCCCceeEEEEe-CCEEEEEcCCCCCCCcc--cccceeCcEEEEEcCC-----CceEEeccCCCCCCC
Q 013179 220 PGWTQLKLPGQAPSSRCGHTITSG-GHYLLLFGGHGTGGWLS--RYDIYYNDTIILDRLS-----AQWKRLPIGNEPPPA 291 (448)
Q Consensus 220 ~~W~~~~~~g~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~--~~~~~~~~v~~yd~~~-----~~W~~~~~~~~~p~~ 291 (448)
-+|+++.++|..|.||.+|.+.+. .+.|||.||++...... ..-...+|+|.+++++ ..|.++.+.+..|.|
T Consensus 217 ykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPsp 296 (521)
T KOG1230|consen 217 YKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSP 296 (521)
T ss_pred eeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCC
Confidence 999999998889999999999887 89999999987532111 1124678999999998 789999999999999
Q ss_pred ccceEEEEEC-CEEEEEccCCCC---------CccCceEEecCCCCcccCceecC
Q 013179 292 RAYHSMTCLG-SLYLLFGGFDGK---------STFGDIWWLVPEEDPIAKRYTES 336 (448)
Q Consensus 292 r~~~~~~~~~-~~i~v~GG~~~~---------~~~~d~w~~~~~yd~~~~~w~~~ 336 (448)
|.++++++.. ++-+.|||...- ..+||++ -||...++|...
T Consensus 297 Rsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy----~fdlt~nrW~~~ 347 (521)
T KOG1230|consen 297 RSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLY----FFDLTRNRWSEG 347 (521)
T ss_pred CCceeEEEecCCceEEecceecccccchhhhhhhhhhhh----heecccchhhHh
Confidence 9999998775 599999998641 1456655 455668889776
No 25
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=1.8e-32 Score=268.36 Aligned_cols=249 Identities=24% Similarity=0.297 Sum_probs=190.8
Q ss_pred cceEEeeeCCCCCCCC-CCCCCcEEEEECCcEEEEEcCCCC------CcccCceEEEEcCCCcEEeeeecCCCCCCCCCC
Q 013179 2 HYWVRASSSDFGGTVP-QPRSGHSAVNIGKSKVVVFGGLVD------KRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGP 74 (448)
Q Consensus 2 ~~W~~~~~~~~~g~~P-~~R~~~~~~~~~~~~iyv~GG~~~------~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p 74 (448)
..|..+++ +| .+|.+|+++.++ ++|||+||... ...++++++||+.+++|+.++. ..|
T Consensus 62 ~~W~~l~~------~p~~~r~~~~~v~~~-~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~--------~~p 126 (376)
T PRK14131 62 KGWTKIAA------FPGGPREQAVAAFID-GKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDT--------RSP 126 (376)
T ss_pred CCeEECCc------CCCCCcccceEEEEC-CEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCC--------CCC
Confidence 36888764 66 489999888887 78999999864 1347899999999999999863 246
Q ss_pred CCCcceeEEE-ECCeEEEEcccCCC----------------------------------CCCCcEEEEECCCCcEEEeec
Q 013179 75 GPRAFHIAVA-IDCHMFIFGGRFGS----------------------------------RRLGDFWVLDTDIWQWSELTS 119 (448)
Q Consensus 75 ~~R~~h~~~~-~~~~lyv~GG~~~~----------------------------------~~~~~~~~~d~~t~~W~~~~~ 119 (448)
.+|.+|++++ .+++||++||.... ...+++++||+.+++|+.+.+
T Consensus 127 ~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~ 206 (376)
T PRK14131 127 VGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGE 206 (376)
T ss_pred CcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCc
Confidence 7788888877 89999999997531 124789999999999999874
Q ss_pred CCCCCC-cCcccEEEEECCcEEEEEecCCCCc-cCCceE--EEeCCCCceEeecCCCCCCCccCC--------ceeEEeC
Q 013179 120 FGDLPS-PRDFAAASAIGNRKIVMYGGWDGKK-WLSDVY--VLDTISLEWMQLPVTGSVPPPRCG--------HTATMVE 187 (448)
Q Consensus 120 ~~~~p~-~r~~~~~~~~~~~~iyv~GG~~~~~-~~~~v~--~yd~~t~~W~~~~~~~~~p~~r~~--------~~~~~~~ 187 (448)
+|. +|..|+++++++ +|||+||..... ...+++ .||+++++|+.++ +||.+|.+ +.++.++
T Consensus 207 ---~p~~~~~~~a~v~~~~-~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~---~~p~~~~~~~~~~~~~~~a~~~~ 279 (376)
T PRK14131 207 ---SPFLGTAGSAVVIKGN-KLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLP---DLPPAPGGSSQEGVAGAFAGYSN 279 (376)
T ss_pred ---CCCCCCCcceEEEECC-EEEEEeeeECCCcCChhheEEEecCCCcceeecC---CCCCCCcCCcCCccceEeceeEC
Confidence 775 677888877765 999999975432 234444 4577899999998 78776642 2356779
Q ss_pred CEEEEEcccCCCCCc--------c--CceeeecccccccCCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCCCCCC
Q 013179 188 KRLLIYGGRGGGGPI--------M--GDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGG 257 (448)
Q Consensus 188 ~~lyv~GG~~~~~~~--------~--~d~~~~~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~~~~~i~v~GG~~~~~ 257 (448)
++|||+||....... . ..+-....+++||+++++|+.+. .+|.+|..++++..+++|||+||....+
T Consensus 280 ~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~---~lp~~r~~~~av~~~~~iyv~GG~~~~~ 356 (376)
T PRK14131 280 GVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVG---ELPQGLAYGVSVSWNNGVLLIGGETAGG 356 (376)
T ss_pred CEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccC---cCCCCccceEEEEeCCEEEEEcCCCCCC
Confidence 999999997642210 0 00111235788999999999887 7899999999999999999999976532
Q ss_pred CcccccceeCcEEEEEcCCCceEE
Q 013179 258 WLSRYDIYYNDTIILDRLSAQWKR 281 (448)
Q Consensus 258 ~~~~~~~~~~~v~~yd~~~~~W~~ 281 (448)
...+++++|++..++++.
T Consensus 357 ------~~~~~v~~~~~~~~~~~~ 374 (376)
T PRK14131 357 ------KAVSDVTLLSWDGKKLTV 374 (376)
T ss_pred ------cEeeeEEEEEEcCCEEEE
Confidence 367899999999888764
No 26
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=2e-32 Score=256.39 Aligned_cols=312 Identities=23% Similarity=0.346 Sum_probs=245.1
Q ss_pred CCcEEeeeecCCCCCCCCCCCCCcceeEEEECCeEEEEcccCCCCCCCcEEEEECCCCcEEEeecCCCCCCcCcccEEEE
Q 013179 55 NKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASA 134 (448)
Q Consensus 55 ~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~ 134 (448)
--+|+++..... +.|.||.+|-++++..-|.||||-+. ...+++++||..+++|..-...|++|.+...|..+.
T Consensus 16 ~~rWrrV~~~tG-----PvPrpRHGHRAVaikELiviFGGGNE-GiiDELHvYNTatnqWf~PavrGDiPpgcAA~Gfvc 89 (830)
T KOG4152|consen 16 VVRWRRVQQSTG-----PVPRPRHGHRAVAIKELIVIFGGGNE-GIIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVC 89 (830)
T ss_pred ccceEEEecccC-----CCCCccccchheeeeeeEEEecCCcc-cchhhhhhhccccceeecchhcCCCCCchhhcceEe
Confidence 347998876654 67899999999999999999999775 456789999999999999888999999999999988
Q ss_pred ECCcEEEEEecCCCC-ccCCceEEEeCCCCceEeecC----CCCCCCccCCceeEEeCCEEEEEcccCCCCC--------
Q 013179 135 IGNRKIVMYGGWDGK-KWLSDVYVLDTISLEWMQLPV----TGSVPPPRCGHTATMVEKRLLIYGGRGGGGP-------- 201 (448)
Q Consensus 135 ~~~~~iyv~GG~~~~-~~~~~v~~yd~~t~~W~~~~~----~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~-------- 201 (448)
.+. +||+|||..+. .+.|++|.+......|+++.+ .|.+|.||.+|+..+++++.|+|||...+..
T Consensus 90 dGt-rilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPr 168 (830)
T KOG4152|consen 90 DGT-RILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPR 168 (830)
T ss_pred cCc-eEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccch
Confidence 876 99999998754 578999988888888998853 5678899999999999999999999765332
Q ss_pred ccCceeeecccccccCC----CCceEEecCCCCCCCCCceeEEEEe------CCEEEEEcCCCCCCCcccccceeCcEEE
Q 013179 202 IMGDLWALKGLIEEENE----TPGWTQLKLPGQAPSSRCGHTITSG------GHYLLLFGGHGTGGWLSRYDIYYNDTII 271 (448)
Q Consensus 202 ~~~d~~~~~~~~~yd~~----~~~W~~~~~~g~~p~~r~~~~~~~~------~~~i~v~GG~~~~~~~~~~~~~~~~v~~ 271 (448)
++||+|.+ ++. --.|+.+...|..|.+|..|+++++ ..++||+||+++ ..+.|+|.
T Consensus 169 YLnDlY~l------eL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G--------~RLgDLW~ 234 (830)
T KOG4152|consen 169 YLNDLYIL------ELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSG--------CRLGDLWT 234 (830)
T ss_pred hhcceEEE------EeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEccccc--------ccccceeE
Confidence 34555544 544 3459998888999999999999985 348999999986 36799999
Q ss_pred EEcCCCceEEeccCCCCCCCccceEEEEECCEEEEEccCCCCC-------ccCceEEec---CCCCcccCceecCCCCCC
Q 013179 272 LDRLSAQWKRLPIGNEPPPARAYHSMTCLGSLYLLFGGFDGKS-------TFGDIWWLV---PEEDPIAKRYTESPPKVL 341 (448)
Q Consensus 272 yd~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~-------~~~d~w~~~---~~yd~~~~~w~~~~~~~~ 341 (448)
+|+++.+|.+....+.+|.||.-|+++.+++++|||||.-... ....-|.-. -+.+..+..|+..-...+
T Consensus 235 Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ 314 (830)
T KOG4152|consen 235 LDLDTLTWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTL 314 (830)
T ss_pred EecceeecccccccCCCCCCcccccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchheeeeeeccc
Confidence 9999999999999888999999999999999999999975311 111112111 112233555554411111
Q ss_pred CCCCccCCCCcCCcccccccccCCchHHHHHHHhCceEEeecCceeeecccchhhHHHH
Q 013179 342 PENKDVGMENYNSQFAVKESQRESSAIVELQKKLDISVSLSRPGLQIMDELEDEEFLEL 400 (448)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 400 (448)
+=..-|+.++.+-.+.+..+++|.....++++-.+++.+.+++-.|
T Consensus 315 -------------ed~tiPR~RAGHCAvAigtRlYiWSGRDGYrKAwnnQVCCkDlWyL 360 (830)
T KOG4152|consen 315 -------------EDNTIPRARAGHCAVAIGTRLYIWSGRDGYRKAWNNQVCCKDLWYL 360 (830)
T ss_pred -------------cccccccccccceeEEeccEEEEEeccchhhHhhccccchhhhhhh
Confidence 1112466777777778888999999999999989999988887554
No 27
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.96 E-value=1.3e-30 Score=243.84 Aligned_cols=375 Identities=23% Similarity=0.311 Sum_probs=261.2
Q ss_pred cceEEeeeCCCCC----CCCCCCCCcEEEEE-CCcEEEEEcCCCCCcccCceEEEEcCCCcEEeeeecCCCCCCCCCCCC
Q 013179 2 HYWVRASSSDFGG----TVPQPRSGHSAVNI-GKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGP 76 (448)
Q Consensus 2 ~~W~~~~~~~~~g----~~P~~R~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~ 76 (448)
-+|.++++++..| ..|.+|.||+|+.. +++.||++|||++.+.+.|+|.|....+.|..+...+ ..|-+
T Consensus 239 ~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t------~~PG~ 312 (723)
T KOG2437|consen 239 PRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDT------EGPGA 312 (723)
T ss_pred ccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcceeEEeecCC------CCCcc
Confidence 3699999877554 58999999999995 6689999999999999999999999999999987654 37999
Q ss_pred CcceeEEEECC--eEEEEcccCC------CCCCCcEEEEECCCCcEEEeec---CCCCCCcCcccEEEEECC-cEEEEEe
Q 013179 77 RAFHIAVAIDC--HMFIFGGRFG------SRRLGDFWVLDTDIWQWSELTS---FGDLPSPRDFAAASAIGN-RKIVMYG 144 (448)
Q Consensus 77 R~~h~~~~~~~--~lyv~GG~~~------~~~~~~~~~~d~~t~~W~~~~~---~~~~p~~r~~~~~~~~~~-~~iyv~G 144 (448)
|++|-++..-. +||++|-+-+ ...-+|+|+||..++.|..+.. ....|...+.|+|++.++ +.|||+|
T Consensus 313 RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfG 392 (723)
T KOG2437|consen 313 RSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFG 392 (723)
T ss_pred hhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEec
Confidence 99999998754 8999998854 2335789999999999999975 235799999999999865 2499999
Q ss_pred cCC---CCccCCceEEEeCCCCceEeecCCC-------CCCCccCCceeEEe--CCEEEEEcccCCCCCccCceeeeccc
Q 013179 145 GWD---GKKWLSDVYVLDTISLEWMQLPVTG-------SVPPPRCGHTATMV--EKRLLIYGGRGGGGPIMGDLWALKGL 212 (448)
Q Consensus 145 G~~---~~~~~~~v~~yd~~t~~W~~~~~~~-------~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~d~~~~~~~ 212 (448)
|+. ....+..+|.||.....|+.+...- .-...|.+|.+-.+ ++.+|++||..... .++.+
T Consensus 393 Gr~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~-------El~L~ 465 (723)
T KOG2437|consen 393 GRILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKT-------ELNLF 465 (723)
T ss_pred CeeccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccce-------EEeeh
Confidence 975 2356889999999999999875321 11245888888776 67899999987765 45667
Q ss_pred ccccCCCCceEEec-----CCCCCCCCCceeEEEE--eCCEEEEEcCCCCCCCcccccceeCcEEEEEcCCCceEEeccC
Q 013179 213 IEEENETPGWTQLK-----LPGQAPSSRCGHTITS--GGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPIG 285 (448)
Q Consensus 213 ~~yd~~~~~W~~~~-----~~g~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~ 285 (448)
..||+....-..++ .....|.+-+...+.. ..++|.+.-|.+.... .+.....+.+|+|+..++.|.++...
T Consensus 466 f~y~I~~E~~~~~s~~~k~dsS~~pS~~f~qRs~~dp~~~~i~~~~G~~~~~~-~~e~~~rns~wi~~i~~~~w~cI~~I 544 (723)
T KOG2437|consen 466 FSYDIDSEHVDIISDGTKKDSSMVPSTGFTQRATIDPELNEIHVLSGLSKDKE-KREENVRNSFWIYDIVRNSWSCIYKI 544 (723)
T ss_pred hcceeccccchhhhccCcCccccCCCcchhhhcccCCCCcchhhhcccchhcc-CccccccCcEEEEEecccchhhHhhh
Confidence 77766544433322 1112344333333333 5678998888876432 22334678999999999999987332
Q ss_pred ---------------------CCCCCCccceEEEE--ECCEEEEEccCCCCC-----ccCceEEecCCCCcccCceecCC
Q 013179 286 ---------------------NEPPPARAYHSMTC--LGSLYLLFGGFDGKS-----TFGDIWWLVPEEDPIAKRYTESP 337 (448)
Q Consensus 286 ---------------------~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~-----~~~d~w~~~~~yd~~~~~w~~~~ 337 (448)
...+++|++|+.++ .-.-+|++||..+.. .++|+|.+++. +|...
T Consensus 545 ~~~~~d~dtvfsvpFp~ks~~~~~~~~rf~h~~~~dL~~~~~yl~Ggn~~~~~~~~m~l~dfW~l~I~------rp~~~- 617 (723)
T KOG2437|consen 545 DQAAKDNDTVFSVPFPTKSLQEEEPCPRFAHQLVYDLLHKVHYLFGGNPGKSCSPKMRLDDFWSLKIC------RPSKD- 617 (723)
T ss_pred HHhhccCCceeeccCCcccccceeccccchhHHHHHHhhhhhhhhcCCCCCCCCchhhhhhHHHHhhc------ccchh-
Confidence 11478899888764 346789999987644 56777877764 33322
Q ss_pred CCCCCCCCccCCCCcCCcccccccccCCchHHHHHHHhCceEEeecCceeeecccchhhHHHHHHhhhcCc
Q 013179 338 PKVLPENKDVGMENYNSQFAVKESQRESSAIVELQKKLDISVSLSRPGLQIMDELEDEEFLELASRLMGAG 408 (448)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 408 (448)
...+...... ..+++.-..+...++.+..+|+.+.+ ..++.....+++|+.+++.|+...
T Consensus 618 --~~l~~~~~~~--~~HrF~E~~~~~~l~a~~ylq~~~~~-------~~D~s~~~~~~e~~lla~~l~~sG 677 (723)
T KOG2437|consen 618 --YLLRHCKYLI--RKHRFEEKAQVDPLSALKYLQNDLYI-------TVDHSDPEETKEFQLLASALFKSG 677 (723)
T ss_pred --hhhhcchhhh--HHHHHHHHhhhhhHHHhHhhhhccee-------ccccCchhhhHHHHHHHHHHHhcC
Confidence 1111111111 11223333333334444455553322 134556667789988888777643
No 28
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.82 E-value=2.2e-18 Score=156.99 Aligned_cols=270 Identities=21% Similarity=0.311 Sum_probs=197.2
Q ss_pred CCCCCCCCcEEEEECCcEEEEEcCCCCCcccCceEEEEcCC--CcEEeeeecCCCCCCCCCCCCCcceeEEEECCeEEEE
Q 013179 15 TVPQPRSGHSAVNIGKSKVVVFGGLVDKRFLSDVVVYDIDN--KLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIF 92 (448)
Q Consensus 15 ~~P~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~--~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~lyv~ 92 (448)
++|.+--+-+...+++ .+||-=|..+ ..++..|+.. ..|+.+... +-.+|....+++++++||+|
T Consensus 32 dlPvg~KnG~Ga~ig~-~~YVGLGs~G----~afy~ldL~~~~k~W~~~a~F--------pG~~rnqa~~a~~~~kLyvF 98 (381)
T COG3055 32 DLPVGFKNGAGALIGD-TVYVGLGSAG----TAFYVLDLKKPGKGWTKIADF--------PGGARNQAVAAVIGGKLYVF 98 (381)
T ss_pred CCCccccccccceecc-eEEEEeccCC----ccceehhhhcCCCCceEcccC--------CCcccccchheeeCCeEEEe
Confidence 4666666667777884 8888766433 3477778764 479999865 35689999999999999999
Q ss_pred cccCC-----CCCCCcEEEEECCCCcEEEeecCCCCCCcCcccEEEEECCcEEEEEecCCCC------------------
Q 013179 93 GGRFG-----SRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGK------------------ 149 (448)
Q Consensus 93 GG~~~-----~~~~~~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~------------------ 149 (448)
||... ...++++|+|||.+++|+++.+ ..|....+++++...+.+||++||.+..
T Consensus 99 gG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t--~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~ 176 (381)
T COG3055 99 GGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDT--RSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEA 176 (381)
T ss_pred eccccCCCCCceEeeeeEEecCCCChhheecc--ccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHH
Confidence 99853 2347899999999999999987 4777888888888877799999996420
Q ss_pred ----------------ccCCceEEEeCCCCceEeecCCCCCC-CccCCceeEEeCCEEEEEcccCCCCCccCceeeeccc
Q 013179 150 ----------------KWLSDVYVLDTISLEWMQLPVTGSVP-PPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGL 212 (448)
Q Consensus 150 ----------------~~~~~v~~yd~~t~~W~~~~~~~~~p-~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~~~~~ 212 (448)
.+...+..|++.+++|+.+- ..| .++++.+.+.-++++.++-|.-..+.+...++..
T Consensus 177 ~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G---~~pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~--- 250 (381)
T COG3055 177 VDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLG---ENPFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQA--- 250 (381)
T ss_pred HHHHHHHHhCCCHHHhcccccccccccccchhhhcC---cCcccCccCcceeecCCeEEEEcceecCCccccceeEE---
Confidence 13456899999999999875 444 4677766666688899999987665443333322
Q ss_pred ccccCCCCceEEecCCCCCCCCC-------ceeEEEEeCCEEEEEcCCCCCCCcc------------cccceeCcEEEEE
Q 013179 213 IEEENETPGWTQLKLPGQAPSSR-------CGHTITSGGHYLLLFGGHGTGGWLS------------RYDIYYNDTIILD 273 (448)
Q Consensus 213 ~~yd~~~~~W~~~~~~g~~p~~r-------~~~~~~~~~~~i~v~GG~~~~~~~~------------~~~~~~~~v~~yd 273 (448)
.+.-...+|..+. ++|.+. .++-.-..++.+.|.||.+-.+... -...+.++||+||
T Consensus 251 -~~~~~~~~w~~l~---~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d 326 (381)
T COG3055 251 -DFGGDNLKWLKLS---DLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD 326 (381)
T ss_pred -EeccCceeeeecc---CCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc
Confidence 2234577898886 333332 2222334788999999976543211 1234677899999
Q ss_pred cCCCceEEeccCCCCCCCccceEEEEECCEEEEEccCCCCC
Q 013179 274 RLSAQWKRLPIGNEPPPARAYHSMTCLGSLYLLFGGFDGKS 314 (448)
Q Consensus 274 ~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~ 314 (448)
.+.|+.+..+ |.++.+..++..++.+|++||.....
T Consensus 327 --~g~Wk~~GeL---p~~l~YG~s~~~nn~vl~IGGE~~~G 362 (381)
T COG3055 327 --NGSWKIVGEL---PQGLAYGVSLSYNNKVLLIGGETSGG 362 (381)
T ss_pred --CCceeeeccc---CCCccceEEEecCCcEEEEccccCCC
Confidence 8999999885 55888888999999999999987544
No 29
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.74 E-value=3.7e-16 Score=142.56 Aligned_cols=234 Identities=21% Similarity=0.329 Sum_probs=167.4
Q ss_pred ceEEeeeCCCCCCCC-CCCCCcEEEEECCcEEEEEcCCCC-----CcccCceEEEEcCCCcEEeeeecCCCCCCCCCCCC
Q 013179 3 YWVRASSSDFGGTVP-QPRSGHSAVNIGKSKVVVFGGLVD-----KRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGP 76 (448)
Q Consensus 3 ~W~~~~~~~~~g~~P-~~R~~~~~~~~~~~~iyv~GG~~~-----~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~ 76 (448)
.|+.+.. .| .+|.+..+++++ ++||+|||... .+..+|+|+||+.+++|.++.+. .|..
T Consensus 71 ~W~~~a~------FpG~~rnqa~~a~~~-~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~--------sP~g 135 (381)
T COG3055 71 GWTKIAD------FPGGARNQAVAAVIG-GKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTR--------SPTG 135 (381)
T ss_pred CceEccc------CCCcccccchheeeC-CeEEEeeccccCCCCCceEeeeeEEecCCCChhheeccc--------cccc
Confidence 5888874 45 478888887777 89999999852 34688999999999999999764 4667
Q ss_pred CcceeEEEECC-eEEEEcccCCC----------------------------------CCCCcEEEEECCCCcEEEeecCC
Q 013179 77 RAFHIAVAIDC-HMFIFGGRFGS----------------------------------RRLGDFWVLDTDIWQWSELTSFG 121 (448)
Q Consensus 77 R~~h~~~~~~~-~lyv~GG~~~~----------------------------------~~~~~~~~~d~~t~~W~~~~~~~ 121 (448)
..+|+++..++ +||++||.+.. ....+++.|+|++++|+.+-.
T Consensus 136 l~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~-- 213 (381)
T COG3055 136 LVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGE-- 213 (381)
T ss_pred cccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCc--
Confidence 78999999988 99999997431 113458999999999998863
Q ss_pred CCC-CcCcccEEEEECCcEEEEEecCCCC-ccCCceEEEeC--CCCceEeecCCCCCCCc-------cCCceeEEeCCEE
Q 013179 122 DLP-SPRDFAAASAIGNRKIVMYGGWDGK-KWLSDVYVLDT--ISLEWMQLPVTGSVPPP-------RCGHTATMVEKRL 190 (448)
Q Consensus 122 ~~p-~~r~~~~~~~~~~~~iyv~GG~~~~-~~~~~v~~yd~--~t~~W~~~~~~~~~p~~-------r~~~~~~~~~~~l 190 (448)
.| .++++ ++++++++++.++-|.-.. -+...+.+++. ...+|..++ ++|.+ ..++-.-..++.+
T Consensus 214 -~pf~~~aG-sa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~---~lp~~~~~~~eGvAGaf~G~s~~~~ 288 (381)
T COG3055 214 -NPFYGNAG-SAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLS---DLPAPIGSNKEGVAGAFSGKSNGEV 288 (381)
T ss_pred -CcccCccC-cceeecCCeEEEEcceecCCccccceeEEEeccCceeeeecc---CCCCCCCCCccccceeccceeCCeE
Confidence 44 44555 5556666688888775433 34455666655 467899996 44433 3344444457899
Q ss_pred EEEcccCCCC------------------CccCceeeecccccccCCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcC
Q 013179 191 LIYGGRGGGG------------------PIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGG 252 (448)
Q Consensus 191 yv~GG~~~~~------------------~~~~d~~~~~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~~~~~i~v~GG 252 (448)
.|.||..-.+ ...++ ++.+| .+.|+.+- .+|.++..-.++..++.+|++||
T Consensus 289 lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~------Vy~~d--~g~Wk~~G---eLp~~l~YG~s~~~nn~vl~IGG 357 (381)
T COG3055 289 LVAGGANFPGALKAYKNGKFYAHEGLSKSWNSE------VYIFD--NGSWKIVG---ELPQGLAYGVSLSYNNKVLLIGG 357 (381)
T ss_pred EEecCCCChhHHHHHHhcccccccchhhhhhce------EEEEc--CCceeeec---ccCCCccceEEEecCCcEEEEcc
Confidence 9999975322 12233 33335 99999887 88998888888889999999999
Q ss_pred CCCCCCcccccceeCcEEEEEcC
Q 013179 253 HGTGGWLSRYDIYYNDTIILDRL 275 (448)
Q Consensus 253 ~~~~~~~~~~~~~~~~v~~yd~~ 275 (448)
.+..+ ....+++.+-..
T Consensus 358 E~~~G------ka~~~v~~l~~~ 374 (381)
T COG3055 358 ETSGG------KATTRVYSLSWD 374 (381)
T ss_pred ccCCC------eeeeeEEEEEEc
Confidence 88765 244555554433
No 30
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.68 E-value=2.6e-17 Score=155.11 Aligned_cols=250 Identities=16% Similarity=0.212 Sum_probs=175.6
Q ss_pred CCCcEEEeecCC-------CCCCcCcccEEEEE-CCcEEEEEecCCCCccCCceEEEeCCCCceEeecCCCCCCCccCCc
Q 013179 110 DIWQWSELTSFG-------DLPSPRDFAAASAI-GNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGH 181 (448)
Q Consensus 110 ~t~~W~~~~~~~-------~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~ 181 (448)
-+.+|.+++++. .-|..|.+|+|+.. ++++||+.||+++-..+.|+|.|+...+.|..+...+..|..|..|
T Consensus 237 y~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCH 316 (723)
T KOG2437|consen 237 YKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDTEGPGARSCH 316 (723)
T ss_pred ccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcceeEEeecCCCCCcchhhh
Confidence 366799888754 46889999999985 5569999999999999999999999999999998887899999999
Q ss_pred eeEEeC--CEEEEEcccCCCCCccCceeeecccccccCCCCceEEecCCC---CCCCCCceeEEEEeCCE--EEEEcCCC
Q 013179 182 TATMVE--KRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPG---QAPSSRCGHTITSGGHY--LLLFGGHG 254 (448)
Q Consensus 182 ~~~~~~--~~lyv~GG~~~~~~~~~d~~~~~~~~~yd~~~~~W~~~~~~g---~~p~~r~~~~~~~~~~~--i~v~GG~~ 254 (448)
.|+... .+||+.|-+-+.... +.+-.-++++.||..++.|..+.-.. .-|...+.|.+++.+++ ||||||..
T Consensus 317 RMVid~S~~KLYLlG~Y~~sS~r-~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~ 395 (723)
T KOG2437|consen 317 RMVIDISRRKLYLLGRYLDSSVR-NSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRI 395 (723)
T ss_pred hhhhhhhHhHHhhhhhccccccc-cccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCee
Confidence 999985 499999987553311 11112245666699999999886321 35888999999998876 99999986
Q ss_pred CCCCcccccceeCcEEEEEcCCCceEEeccCCC-------CCCCccceEEEEE--CCEEEEEccCCCCCccCceEEecCC
Q 013179 255 TGGWLSRYDIYYNDTIILDRLSAQWKRLPIGNE-------PPPARAYHSMTCL--GSLYLLFGGFDGKSTFGDIWWLVPE 325 (448)
Q Consensus 255 ~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~-------~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~d~w~~~~~ 325 (448)
-+. .+..+..+|.||.....|..+...-. .-..|.+|++-.. ++.+|+|||......++- ...
T Consensus 396 ~~~----~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~El~L----~f~ 467 (723)
T KOG2437|consen 396 LTC----NEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKTELNL----FFS 467 (723)
T ss_pred ccC----CCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccceEEee----hhc
Confidence 543 13466889999999999998744211 1335777877554 579999999765544432 334
Q ss_pred CCcccCceecCCCCCCCCCCccCCCCcCCcccccccccCCchH
Q 013179 326 EDPIAKRYTESPPKVLPENKDVGMENYNSQFAVKESQRESSAI 368 (448)
Q Consensus 326 yd~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (448)
|+...+.-...+--...+.+.+..+.+.......|+....+.+
T Consensus 468 y~I~~E~~~~~s~~~k~dsS~~pS~~f~qRs~~dp~~~~i~~~ 510 (723)
T KOG2437|consen 468 YDIDSEHVDIISDGTKKDSSMVPSTGFTQRATIDPELNEIHVL 510 (723)
T ss_pred ceeccccchhhhccCcCccccCCCcchhhhcccCCCCcchhhh
Confidence 5443333322222222244455555554444445544444443
No 31
>PF13964 Kelch_6: Kelch motif
Probab=99.28 E-value=9.4e-12 Score=84.12 Aligned_cols=49 Identities=31% Similarity=0.599 Sum_probs=45.6
Q ss_pred CCcceeEEEECCeEEEEcccCC-CCCCCcEEEEECCCCcEEEeecCCCCCCcC
Q 013179 76 PRAFHIAVAIDCHMFIFGGRFG-SRRLGDFWVLDTDIWQWSELTSFGDLPSPR 127 (448)
Q Consensus 76 ~R~~h~~~~~~~~lyv~GG~~~-~~~~~~~~~~d~~t~~W~~~~~~~~~p~~r 127 (448)
||.+|++++++++|||+||... ...++++++||+++++|+++++ ||.+|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~---mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPP---MPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCC---CCCCC
Confidence 6899999999999999999988 7889999999999999999984 99887
No 32
>PF13964 Kelch_6: Kelch motif
Probab=99.14 E-value=1.2e-10 Score=78.59 Aligned_cols=49 Identities=41% Similarity=0.740 Sum_probs=44.7
Q ss_pred cCcccEEEEECCcEEEEEecCCC-CccCCceEEEeCCCCceEeecCCCCCCCcc
Q 013179 126 PRDFAAASAIGNRKIVMYGGWDG-KKWLSDVYVLDTISLEWMQLPVTGSVPPPR 178 (448)
Q Consensus 126 ~r~~~~~~~~~~~~iyv~GG~~~-~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r 178 (448)
+|.+|+++++++ +|||+||... ....+++++||+++++|++++ +||.||
T Consensus 1 pR~~~s~v~~~~-~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~---~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGG-KIYVFGGYDNSGKYSNDVERYDPETNTWEQLP---PMPTPR 50 (50)
T ss_pred CCccCEEEEECC-EEEEECCCCCCCCccccEEEEcCCCCcEEECC---CCCCCC
Confidence 588999999966 9999999988 678999999999999999998 899887
No 33
>PLN02772 guanylate kinase
Probab=99.04 E-value=1.4e-09 Score=103.80 Aligned_cols=89 Identities=17% Similarity=0.274 Sum_probs=77.9
Q ss_pred CCCCCcceeEEEECCeEEEEcccCCCC-CCCcEEEEECCCCcEEEeecCCCCCCcCcccEEEEECCcEEEEEecCCCCcc
Q 013179 73 GPGPRAFHIAVAIDCHMFIFGGRFGSR-RLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKW 151 (448)
Q Consensus 73 ~p~~R~~h~~~~~~~~lyv~GG~~~~~-~~~~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~ 151 (448)
...++.+|+++.+++++|||||.+... ..+.+++||..|++|......|..|.+|.+|+++++++.+|+|+++-....
T Consensus 21 ~~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~~- 99 (398)
T PLN02772 21 GVKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAPD- 99 (398)
T ss_pred cCCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCCc-
Confidence 356899999999999999999988754 678999999999999999888999999999999999888999998755543
Q ss_pred CCceEEEeCCCC
Q 013179 152 LSDVYVLDTISL 163 (448)
Q Consensus 152 ~~~v~~yd~~t~ 163 (448)
+++|.+..+|.
T Consensus 100 -~~~w~l~~~t~ 110 (398)
T PLN02772 100 -DSIWFLEVDTP 110 (398)
T ss_pred -cceEEEEcCCH
Confidence 67888887764
No 34
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=99.03 E-value=5.7e-10 Score=74.87 Aligned_cols=47 Identities=38% Similarity=0.568 Sum_probs=41.6
Q ss_pred CcEEEEEcCCC--CCcccCceEEEEcCCCcEEeeeecCCCCCCCCCCCCCcceeEEEE
Q 013179 30 KSKVVVFGGLV--DKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI 85 (448)
Q Consensus 30 ~~~iyv~GG~~--~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~ 85 (448)
+++||||||++ +...++++|+||+.+++|++++ .+|.+|.+|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~---------~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIG---------DLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECC---------CCCCCccceEEEEC
Confidence 37899999998 6778999999999999999984 57999999999864
No 35
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=99.02 E-value=6.6e-10 Score=74.56 Aligned_cols=47 Identities=40% Similarity=0.836 Sum_probs=42.4
Q ss_pred CCeEEEEcccC--CCCCCCcEEEEECCCCcEEEeecCCCCCCcCcccEEEEE
Q 013179 86 DCHMFIFGGRF--GSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAI 135 (448)
Q Consensus 86 ~~~lyv~GG~~--~~~~~~~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~ 135 (448)
+++||||||.. ....++++|+||+.+++|+++. ++|.+|..|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~---~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIG---DLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECC---CCCCCccceEEEEC
Confidence 57899999998 5777999999999999999994 69999999999874
No 36
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=99.00 E-value=6.7e-10 Score=73.97 Aligned_cols=44 Identities=30% Similarity=0.551 Sum_probs=40.8
Q ss_pred CCcceeEEEECCeEEEEcccCC-CCCCCcEEEEECCCCcEEEeec
Q 013179 76 PRAFHIAVAIDCHMFIFGGRFG-SRRLGDFWVLDTDIWQWSELTS 119 (448)
Q Consensus 76 ~R~~h~~~~~~~~lyv~GG~~~-~~~~~~~~~~d~~t~~W~~~~~ 119 (448)
||.+|++++++++|||+||.+. ...++++++||+.+++|+.+++
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~ 45 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPP 45 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEE
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCC
Confidence 6899999999999999999998 7789999999999999999985
No 37
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.97 E-value=1.5e-09 Score=72.81 Aligned_cols=44 Identities=43% Similarity=0.833 Sum_probs=40.3
Q ss_pred CCcceeEEEECCeEEEEccc---CCCCCCCcEEEEECCCCcEEEeec
Q 013179 76 PRAFHIAVAIDCHMFIFGGR---FGSRRLGDFWVLDTDIWQWSELTS 119 (448)
Q Consensus 76 ~R~~h~~~~~~~~lyv~GG~---~~~~~~~~~~~~d~~t~~W~~~~~ 119 (448)
||++|++++.+++|||+||+ ......+++++||+++++|+.+++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~ 47 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSP 47 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCC
Confidence 68999999999999999999 456778999999999999999875
No 38
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.97 E-value=6.6e-10 Score=74.67 Aligned_cols=44 Identities=41% Similarity=0.759 Sum_probs=30.2
Q ss_pred CCCCcEEEEECCcEEEEEcCCCCC-cccCceEEEEcCCCcEEeee
Q 013179 19 PRSGHSAVNIGKSKVVVFGGLVDK-RFLSDVVVYDIDNKLWFQPE 62 (448)
Q Consensus 19 ~R~~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~yd~~~~~W~~~~ 62 (448)
||.+|+++.+++++||||||.+.. ..++++|+||+++++|++++
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~ 45 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLP 45 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECC
Confidence 699999999977899999999765 69999999999999999985
No 39
>PLN02772 guanylate kinase
Probab=98.92 E-value=6.9e-09 Score=99.13 Aligned_cols=91 Identities=13% Similarity=0.168 Sum_probs=75.0
Q ss_pred CCCCccCCceeEEeCCEEEEEcccCCCCCccCceeeecccccccCCCCceEEecCCCCCCCCCceeEEEEe-CCEEEEEc
Q 013179 173 SVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSG-GHYLLLFG 251 (448)
Q Consensus 173 ~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~~~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~~-~~~i~v~G 251 (448)
....++..|+++.+++++||+||....+...++ +++||..+.+|..+...|..|.+|.+|+++++ +++|+|++
T Consensus 20 ~~~~~~~~~tav~igdk~yv~GG~~d~~~~~~~------v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~ 93 (398)
T PLN02772 20 FGVKPKNRETSVTIGDKTYVIGGNHEGNTLSIG------VQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIK 93 (398)
T ss_pred ccCCCCCcceeEEECCEEEEEcccCCCccccce------EEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEe
Confidence 446689999999999999999998776544444 45559999999999999999999999999987 57999999
Q ss_pred CCCCCCCcccccceeCcEEEEEcCCCc
Q 013179 252 GHGTGGWLSRYDIYYNDTIILDRLSAQ 278 (448)
Q Consensus 252 G~~~~~~~~~~~~~~~~v~~yd~~~~~ 278 (448)
+.+... .++|.+.+.|.-
T Consensus 94 ~~~~~~---------~~~w~l~~~t~~ 111 (398)
T PLN02772 94 KGSAPD---------DSIWFLEVDTPF 111 (398)
T ss_pred CCCCCc---------cceEEEEcCCHH
Confidence 765532 689999887653
No 40
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.88 E-value=2e-09 Score=72.28 Aligned_cols=47 Identities=36% Similarity=0.712 Sum_probs=31.1
Q ss_pred cCcccEEEEECCcEEEEEecCCCC-ccCCceEEEeCCCCceEeecCCCCCC
Q 013179 126 PRDFAAASAIGNRKIVMYGGWDGK-KWLSDVYVLDTISLEWMQLPVTGSVP 175 (448)
Q Consensus 126 ~r~~~~~~~~~~~~iyv~GG~~~~-~~~~~v~~yd~~t~~W~~~~~~~~~p 175 (448)
+|.+|+++.+.+++||||||.+.. ..++++|+||+.+++|++++ ++|
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~---~~P 48 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLP---SMP 48 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE-----SS-
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECC---CCC
Confidence 689999999976799999999876 68999999999999999996 655
No 41
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.87 E-value=6.4e-09 Score=69.74 Aligned_cols=47 Identities=26% Similarity=0.369 Sum_probs=40.6
Q ss_pred CCceeEEEEeCCEEEEEcCC-CCCCCcccccceeCcEEEEEcCCCceEEeccC
Q 013179 234 SRCGHTITSGGHYLLLFGGH-GTGGWLSRYDIYYNDTIILDRLSAQWKRLPIG 285 (448)
Q Consensus 234 ~r~~~~~~~~~~~i~v~GG~-~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~ 285 (448)
+|..|++++.+++|||+||+ ... .....+++++||+++++|++++.+
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~-----~~~~~~~v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDN-----GGSSSNDVWVFDTETNQWTELSPM 48 (49)
T ss_pred CccceEEEEECCEEEEECCcccCC-----CCcccceeEEEECCCCEEeecCCC
Confidence 68999999999999999999 221 146789999999999999999875
No 42
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.81 E-value=4.9e-09 Score=69.72 Aligned_cols=46 Identities=41% Similarity=0.702 Sum_probs=40.4
Q ss_pred cCcccEEEEECCcEEEEEecCCC-CccCCceEEEeCCCCceEeecCCCCCC
Q 013179 126 PRDFAAASAIGNRKIVMYGGWDG-KKWLSDVYVLDTISLEWMQLPVTGSVP 175 (448)
Q Consensus 126 ~r~~~~~~~~~~~~iyv~GG~~~-~~~~~~v~~yd~~t~~W~~~~~~~~~p 175 (448)
+|..|+++++++ +|||+||.+. ...++++++||+.+++|+.++ +||
T Consensus 1 pR~~~~~~~~~~-~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~---~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGN-KIYVIGGYDGNNQPTNSVEVYDPETNTWEELP---PMP 47 (47)
T ss_dssp -BBSEEEEEETT-EEEEEEEBESTSSBEEEEEEEETTTTEEEEEE---EES
T ss_pred CCccCEEEEECC-EEEEEeeecccCceeeeEEEEeCCCCEEEEcC---CCC
Confidence 588899999965 9999999988 678999999999999999998 554
No 43
>PF13854 Kelch_5: Kelch motif
Probab=98.79 E-value=1.3e-08 Score=65.55 Aligned_cols=40 Identities=38% Similarity=0.624 Sum_probs=35.9
Q ss_pred CCCCCcceeEEEECCeEEEEcccCC--CCCCCcEEEEECCCC
Q 013179 73 GPGPRAFHIAVAIDCHMFIFGGRFG--SRRLGDFWVLDTDIW 112 (448)
Q Consensus 73 ~p~~R~~h~~~~~~~~lyv~GG~~~--~~~~~~~~~~d~~t~ 112 (448)
+|.+|.+|++++++++|||+||.+. ...++++|+||+.+.
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence 3889999999999999999999993 677899999999763
No 44
>PF13854 Kelch_5: Kelch motif
Probab=98.70 E-value=3.5e-08 Score=63.57 Aligned_cols=40 Identities=38% Similarity=0.794 Sum_probs=35.7
Q ss_pred CCCCCCCcEEEEECCcEEEEEcCCC--CCcccCceEEEEcCCC
Q 013179 16 VPQPRSGHSAVNIGKSKVVVFGGLV--DKRFLSDVVVYDIDNK 56 (448)
Q Consensus 16 ~P~~R~~~~~~~~~~~~iyv~GG~~--~~~~~~~~~~yd~~~~ 56 (448)
+|.+|.+|++++++ ++||||||.. .+..++|+|+||+.+.
T Consensus 1 ~P~~R~~hs~~~~~-~~iyi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVG-NNIYIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEEC-CEEEEEcCccCCCCCEECcEEEEECCCC
Confidence 58999999999998 8899999998 4778999999999863
No 45
>smart00612 Kelch Kelch domain.
Probab=98.65 E-value=4.4e-08 Score=64.96 Aligned_cols=47 Identities=40% Similarity=0.777 Sum_probs=41.9
Q ss_pred EEEEEecCCCCccCCceEEEeCCCCceEeecCCCCCCCccCCceeEEeCC
Q 013179 139 KIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEK 188 (448)
Q Consensus 139 ~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~ 188 (448)
+||++||.......+++++||+.+++|+.++ +||.+|..|+++.+++
T Consensus 1 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPLP---SMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCCceeeeEEEECCCCCeEccCC---CCCCccccceEEEeCC
Confidence 4899999987667899999999999999998 9999999999987754
No 46
>smart00612 Kelch Kelch domain.
Probab=98.64 E-value=4.4e-08 Score=64.95 Aligned_cols=47 Identities=32% Similarity=0.461 Sum_probs=41.1
Q ss_pred EEEEEcCCCCCcccCceEEEEcCCCcEEeeeecCCCCCCCCCCCCCcceeEEEECC
Q 013179 32 KVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDC 87 (448)
Q Consensus 32 ~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~ 87 (448)
+||++||..+...++++++||+.+++|+.++ ++|.+|..|+++++++
T Consensus 1 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~---------~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPLP---------SMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCCceeeeEEEECCCCCeEccCC---------CCCCccccceEEEeCC
Confidence 4899999977677899999999999999876 5799999999988764
No 47
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.56 E-value=7.1e-06 Score=74.11 Aligned_cols=156 Identities=17% Similarity=0.209 Sum_probs=102.9
Q ss_pred EEEEECCCCcEEEeecCCCCCCcCcccEEEEECCcEEEEEecCCCCccCCceEEEeCCC----CceEeecCCCCCCCccC
Q 013179 104 FWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTIS----LEWMQLPVTGSVPPPRC 179 (448)
Q Consensus 104 ~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t----~~W~~~~~~~~~p~~r~ 179 (448)
.-.||+.+++++.+. .+.--+..+.+...||++++.||.... ...+..|++.+ ..|.+... .|..+|.
T Consensus 48 s~~yD~~tn~~rpl~----v~td~FCSgg~~L~dG~ll~tGG~~~G--~~~ir~~~p~~~~~~~~w~e~~~--~m~~~RW 119 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLT----VQTDTFCSGGAFLPDGRLLQTGGDNDG--NKAIRIFTPCTSDGTCDWTESPN--DMQSGRW 119 (243)
T ss_pred EEEEecCCCcEEecc----CCCCCcccCcCCCCCCCEEEeCCCCcc--ccceEEEecCCCCCCCCceECcc--cccCCCc
Confidence 567999999999986 334444444455678899999997552 35577788765 67987752 4889999
Q ss_pred CceeEEe-CCEEEEEcccCCCCCccCceeeecccccccCC-----CCceEEecCC-CCCCCCCceeEEEEeCCEEEEEcC
Q 013179 180 GHTATMV-EKRLLIYGGRGGGGPIMGDLWALKGLIEEENE-----TPGWTQLKLP-GQAPSSRCGHTITSGGHYLLLFGG 252 (448)
Q Consensus 180 ~~~~~~~-~~~lyv~GG~~~~~~~~~d~~~~~~~~~yd~~-----~~~W~~~~~~-g~~p~~r~~~~~~~~~~~i~v~GG 252 (448)
..++... +++++|+||..... .+.+... ...|..+... ...+..-+-+..+.-+++||+++.
T Consensus 120 YpT~~~L~DG~vlIvGG~~~~t-----------~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an 188 (243)
T PF07250_consen 120 YPTATTLPDGRVLIVGGSNNPT-----------YEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFAN 188 (243)
T ss_pred cccceECCCCCEEEEeCcCCCc-----------ccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEc
Confidence 9998887 78999999987321 1222221 1222222211 123444444556667899999986
Q ss_pred CCCCCCcccccceeCcEEEEEcCCCce-EEeccCCCCCCCccc
Q 013179 253 HGTGGWLSRYDIYYNDTIILDRLSAQW-KRLPIGNEPPPARAY 294 (448)
Q Consensus 253 ~~~~~~~~~~~~~~~~v~~yd~~~~~W-~~~~~~~~~p~~r~~ 294 (448)
. +-++||..++++ +.++.++.. +|.+
T Consensus 189 ~--------------~s~i~d~~~n~v~~~lP~lPg~--~R~Y 215 (243)
T PF07250_consen 189 R--------------GSIIYDYKTNTVVRTLPDLPGG--PRNY 215 (243)
T ss_pred C--------------CcEEEeCCCCeEEeeCCCCCCC--ceec
Confidence 3 467889999987 677776442 4543
No 48
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=98.47 E-value=9.8e-05 Score=66.38 Aligned_cols=128 Identities=19% Similarity=0.229 Sum_probs=85.0
Q ss_pred CCCCCCCcceeEEEE---CC---eEEEEcccCCCC-CCCcEEEEECCCCc--------EEEeecCCCCCCcCcccEEEEE
Q 013179 71 QVGPGPRAFHIAVAI---DC---HMFIFGGRFGSR-RLGDFWVLDTDIWQ--------WSELTSFGDLPSPRDFAAASAI 135 (448)
Q Consensus 71 ~~~p~~R~~h~~~~~---~~---~lyv~GG~~~~~-~~~~~~~~d~~t~~--------W~~~~~~~~~p~~r~~~~~~~~ 135 (448)
.-+|..|.-+.+..- ++ .-+|.||++.++ ..+.+|+....... .++....|++|.+|++|++.++
T Consensus 17 CYLPPLR~PAv~~~~~~~~~~~~~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV 96 (337)
T PF03089_consen 17 CYLPPLRCPAVCHLSDPSDGEPEQYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVV 96 (337)
T ss_pred ccCCCCCCccEeeecCCCCCCeeeEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEE
Confidence 345666654444331 22 356779998754 45568887665433 2222335889999999999987
Q ss_pred ---CCcEEEEEecCCCC--------------ccCCceEEEeCCCCceEeecCCCCCCCccCCceeEEeCCEEEEEcccCC
Q 013179 136 ---GNRKIVMYGGWDGK--------------KWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGG 198 (448)
Q Consensus 136 ---~~~~iyv~GG~~~~--------------~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~ 198 (448)
++...++|||+.-- .+...||.+|++-+-.+.-..+ .+......|.+..-++.+|++||..-
T Consensus 97 ~SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~lp-El~dG~SFHvslar~D~VYilGGHsl 175 (337)
T PF03089_consen 97 HSRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTLP-ELQDGQSFHVSLARNDCVYILGGHSL 175 (337)
T ss_pred EECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccccch-hhcCCeEEEEEEecCceEEEEccEEc
Confidence 44478889997521 2345688899887766654211 44556777888888999999999864
Q ss_pred C
Q 013179 199 G 199 (448)
Q Consensus 199 ~ 199 (448)
.
T Consensus 176 ~ 176 (337)
T PF03089_consen 176 E 176 (337)
T ss_pred c
Confidence 4
No 49
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=98.46 E-value=5.3e-06 Score=74.32 Aligned_cols=130 Identities=22% Similarity=0.371 Sum_probs=86.7
Q ss_pred CCCCCCCCCCCCCcEEEEE---CCcEEEEEcCCC----CC----------cccCceEEEEcCCCcEEeeeecCCCCCCCC
Q 013179 10 SDFGGTVPQPRSGHSAVNI---GKSKVVVFGGLV----DK----------RFLSDVVVYDIDNKLWFQPECTGNGSNGQV 72 (448)
Q Consensus 10 ~~~~g~~P~~R~~~~~~~~---~~~~iyv~GG~~----~~----------~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~ 72 (448)
++..|++|.+|+||++-++ ++..+++|||.. ++ ...-.|+.+|++-+..+..... .
T Consensus 78 KeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~lp-------E 150 (337)
T PF03089_consen 78 KELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTLP-------E 150 (337)
T ss_pred ceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccccch-------h
Confidence 4567899999999999886 566799999973 11 1233688999998877655422 3
Q ss_pred CCCCCcceeEEEECCeEEEEcccCC--CCCCCcEEEEECC--CC-cEEEeecCCCCCCcCcccEEEE--ECCcEEEEEec
Q 013179 73 GPGPRAFHIAVAIDCHMFIFGGRFG--SRRLGDFWVLDTD--IW-QWSELTSFGDLPSPRDFAAASA--IGNRKIVMYGG 145 (448)
Q Consensus 73 ~p~~R~~h~~~~~~~~lyv~GG~~~--~~~~~~~~~~d~~--t~-~W~~~~~~~~~p~~r~~~~~~~--~~~~~iyv~GG 145 (448)
+....++|.+.+-++.+|++||..- +.....+++...+ .+ -..... -++.+....++.+ ++.....|+||
T Consensus 151 l~dG~SFHvslar~D~VYilGGHsl~sd~Rpp~l~rlkVdLllGSP~vsC~---vl~~glSisSAIvt~~~~~e~iIlGG 227 (337)
T PF03089_consen 151 LQDGQSFHVSLARNDCVYILGGHSLESDSRPPRLYRLKVDLLLGSPAVSCT---VLQGGLSISSAIVTQTGPHEYIILGG 227 (337)
T ss_pred hcCCeEEEEEEecCceEEEEccEEccCCCCCCcEEEEEEeecCCCceeEEE---ECCCCceEeeeeEeecCCCceEEEec
Confidence 5567789999999999999999753 3334456665432 22 222222 1455555444444 35558889999
Q ss_pred CCCC
Q 013179 146 WDGK 149 (448)
Q Consensus 146 ~~~~ 149 (448)
+..+
T Consensus 228 Y~sd 231 (337)
T PF03089_consen 228 YQSD 231 (337)
T ss_pred cccc
Confidence 8654
No 50
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.33 E-value=1.6e-05 Score=71.80 Aligned_cols=146 Identities=17% Similarity=0.239 Sum_probs=94.3
Q ss_pred eEEEEcCCCcEEeeeecCCCCCCCCCCCCCcceeEEE-ECCeEEEEcccCCCCCCCcEEEEECCC----CcEEEeecCCC
Q 013179 48 VVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVA-IDCHMFIFGGRFGSRRLGDFWVLDTDI----WQWSELTSFGD 122 (448)
Q Consensus 48 ~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~t----~~W~~~~~~~~ 122 (448)
-..||+.+++++.+... .--+|.+.+. -++++++.||.... ...+..|++.+ ..|.+... .
T Consensus 48 s~~yD~~tn~~rpl~v~----------td~FCSgg~~L~dG~ll~tGG~~~G--~~~ir~~~p~~~~~~~~w~e~~~--~ 113 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQ----------TDTFCSGGAFLPDGRLLQTGGDNDG--NKAIRIFTPCTSDGTCDWTESPN--D 113 (243)
T ss_pred EEEEecCCCcEEeccCC----------CCCcccCcCCCCCCCEEEeCCCCcc--ccceEEEecCCCCCCCCceECcc--c
Confidence 46699999999988643 2233333333 37899999998652 34577888865 67988764 4
Q ss_pred CCCcCcccEEEEECCcEEEEEecCCCCccCCceEEEeCC-C-----CceEeecCC-CCCCCccCCceeEEeCCEEEEEcc
Q 013179 123 LPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTI-S-----LEWMQLPVT-GSVPPPRCGHTATMVEKRLLIYGG 195 (448)
Q Consensus 123 ~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~-t-----~~W~~~~~~-~~~p~~r~~~~~~~~~~~lyv~GG 195 (448)
|-.+|++.++..+.|++++|+||.... .+.|-+. . ..|..+... ...+...+=+..++-+++||+++.
T Consensus 114 m~~~RWYpT~~~L~DG~vlIvGG~~~~-----t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an 188 (243)
T PF07250_consen 114 MQSGRWYPTATTLPDGRVLIVGGSNNP-----TYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFAN 188 (243)
T ss_pred ccCCCccccceECCCCCEEEEeCcCCC-----cccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEc
Confidence 899999999999999999999998732 2223232 1 122222211 012233343444455899999998
Q ss_pred cCCCCCccCceeeecccccccCCCCce-EEec
Q 013179 196 RGGGGPIMGDLWALKGLIEEENETPGW-TQLK 226 (448)
Q Consensus 196 ~~~~~~~~~d~~~~~~~~~yd~~~~~W-~~~~ 226 (448)
... ..||..++++ ..++
T Consensus 189 ~~s--------------~i~d~~~n~v~~~lP 206 (243)
T PF07250_consen 189 RGS--------------IIYDYKTNTVVRTLP 206 (243)
T ss_pred CCc--------------EEEeCCCCeEEeeCC
Confidence 632 2358888877 4555
No 51
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.31 E-value=0.00037 Score=63.55 Aligned_cols=201 Identities=12% Similarity=0.077 Sum_probs=111.0
Q ss_pred CceEEEEcCCCcEEeeeecCCCCCCCCCCCC-Ccc-eeEEEEC----C-eEEEEcccCCCCCCCcEEEEECCCCcEEEee
Q 013179 46 SDVVVYDIDNKLWFQPECTGNGSNGQVGPGP-RAF-HIAVAID----C-HMFIFGGRFGSRRLGDFWVLDTDIWQWSELT 118 (448)
Q Consensus 46 ~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~-R~~-h~~~~~~----~-~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~ 118 (448)
..+.++||.|++|..+|... .+.. ... ....-++ + ++..+...........+++|+..++.|+.+.
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~-------~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~~~~~Wr~~~ 86 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPK-------SRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTLGSNSWRTIE 86 (230)
T ss_pred CcEEEECCCCCCEEecCCCC-------CcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEEeCCCCccccc
Confidence 46999999999999997321 1100 111 1112222 2 4555543322223356899999999999987
Q ss_pred cCCCCCCcCcccEEEEECCcEEEEEecCCCCccCCceEEEeCCCCceEe-ecCCCCCCCccC----CceeEEeCCEEEEE
Q 013179 119 SFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQ-LPVTGSVPPPRC----GHTATMVEKRLLIY 193 (448)
Q Consensus 119 ~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~-~~~~~~~p~~r~----~~~~~~~~~~lyv~ 193 (448)
.. .+........+.+ +|.+|-+.-.........+..||+.+.+|.. ++ +|..+. ...++..+++|.++
T Consensus 87 ~~--~~~~~~~~~~v~~-~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~----~P~~~~~~~~~~~L~~~~G~L~~v 159 (230)
T TIGR01640 87 CS--PPHHPLKSRGVCI-NGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIP----LPCGNSDSVDYLSLINYKGKLAVL 159 (230)
T ss_pred cC--CCCccccCCeEEE-CCEEEEEEEECCCCCcEEEEEEEcccceEeeeee----cCccccccccceEEEEECCEEEEE
Confidence 41 2221122224445 5688888743322211269999999999995 64 333322 33455668998887
Q ss_pred cccCCCCCccCceeeecccccccCCCCceEEecCCCCCCCCCc----eeEEEEeCCEEEEEcCCCCCCCcccccceeCcE
Q 013179 194 GGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRC----GHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDT 269 (448)
Q Consensus 194 GG~~~~~~~~~d~~~~~~~~~yd~~~~~W~~~~~~g~~p~~r~----~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v 269 (448)
....... .-++|.++ |-....|++.-.-...+.++. ....+..+++|++.... ..+ .-+
T Consensus 160 ~~~~~~~--~~~IWvl~-----d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~-~~~---------~~~ 222 (230)
T TIGR01640 160 KQKKDTN--NFDLWVLN-----DAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCED-ENP---------FYI 222 (230)
T ss_pred EecCCCC--cEEEEEEC-----CCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCC-CCc---------eEE
Confidence 7643221 24677764 233456987532111111111 12344567888887642 110 138
Q ss_pred EEEEcCCC
Q 013179 270 IILDRLSA 277 (448)
Q Consensus 270 ~~yd~~~~ 277 (448)
..||+.++
T Consensus 223 ~~y~~~~~ 230 (230)
T TIGR01640 223 FYYNVGEN 230 (230)
T ss_pred EEEeccCC
Confidence 88888764
No 52
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.12 E-value=0.00066 Score=61.86 Aligned_cols=188 Identities=13% Similarity=0.062 Sum_probs=107.0
Q ss_pred CcEEEEECCCCcEEEeecCCCCCCc---Cccc-EEEEE----CCcEEEEEecCCCCccCCceEEEeCCCCceEeecCCCC
Q 013179 102 GDFWVLDTDIWQWSELTSFGDLPSP---RDFA-AASAI----GNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGS 173 (448)
Q Consensus 102 ~~~~~~d~~t~~W~~~~~~~~~p~~---r~~~-~~~~~----~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~ 173 (448)
..+.++||.|++|..+++ .+.+ ...+ .+... ++-++..+...........+++|+..++.|+.+...
T Consensus 14 ~~~~V~NP~T~~~~~LP~---~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~~~~~Wr~~~~~-- 88 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPT---PKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTLGSNSWRTIECS-- 88 (230)
T ss_pred CcEEEECCCCCCEEecCC---CCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEEeCCCCccccccC--
Confidence 468999999999999974 2211 1111 11111 223566665432222345789999999999998622
Q ss_pred CCCccCCceeEEeCCEEEEEcccCCCCCccCceeeecccccccCCCCceEE-ecCCCCCCCCCceeEEEEeCCEEEEEcC
Q 013179 174 VPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQ-LKLPGQAPSSRCGHTITSGGHYLLLFGG 252 (448)
Q Consensus 174 ~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~~~~~~~yd~~~~~W~~-~~~~g~~p~~r~~~~~~~~~~~i~v~GG 252 (448)
.+........+.+++.+|-+.-...... ...+..||+.+.+|.. ++.+...........++..+++|.++..
T Consensus 89 ~~~~~~~~~~v~~~G~lyw~~~~~~~~~-------~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~ 161 (230)
T TIGR01640 89 PPHHPLKSRGVCINGVLYYLAYTLKTNP-------DYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLINYKGKLAVLKQ 161 (230)
T ss_pred CCCccccCCeEEECCEEEEEEEECCCCC-------cEEEEEEEcccceEeeeeecCccccccccceEEEEECCEEEEEEe
Confidence 1111122236778999998875432110 0146678999999994 6532111111123345567788888765
Q ss_pred CCCCCCcccccceeCcEEEEE-cCCCceEEeccCCCCCCCccc----eEEEEECCEEEEEcc
Q 013179 253 HGTGGWLSRYDIYYNDTIILD-RLSAQWKRLPIGNEPPPARAY----HSMTCLGSLYLLFGG 309 (448)
Q Consensus 253 ~~~~~~~~~~~~~~~~v~~yd-~~~~~W~~~~~~~~~p~~r~~----~~~~~~~~~i~v~GG 309 (448)
..... .-++|+++ -....|+++-..+.++.++.. ...+.-+++|++...
T Consensus 162 ~~~~~--------~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~ 215 (230)
T TIGR01640 162 KKDTN--------NFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCE 215 (230)
T ss_pred cCCCC--------cEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeC
Confidence 43211 14799987 445679986554322222222 233455688888765
No 53
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.25 E-value=0.23 Score=49.14 Aligned_cols=220 Identities=15% Similarity=0.146 Sum_probs=113.4
Q ss_pred EECCcEEEEEcCCCCCcccCceEEEEcCCCc--EEeeeecCCCCCCCCCCCCCcceeEEEECCeEEEEcccCCCCCCCcE
Q 013179 27 NIGKSKVVVFGGLVDKRFLSDVVVYDIDNKL--WFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDF 104 (448)
Q Consensus 27 ~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~ 104 (448)
++.+++||+.... ..+++||.++++ |+.-...... .....+.++.....++.++++|+.+. + ..+
T Consensus 66 vv~~~~vy~~~~~------g~l~ald~~tG~~~W~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~v~v~~~-~-----g~l 132 (394)
T PRK11138 66 AVAYNKVYAADRA------GLVKALDADTGKEIWSVDLSEKDG-WFSKNKSALLSGGVTVAGGKVYIGSE-K-----GQV 132 (394)
T ss_pred EEECCEEEEECCC------CeEEEEECCCCcEeeEEcCCCccc-ccccccccccccccEEECCEEEEEcC-C-----CEE
Confidence 3444789987642 358999998774 8653211000 00000012333345667888887532 2 358
Q ss_pred EEEECCCCc--EEEeecCCCCCCcCcccEEEEECCcEEEEEecCCCCccCCceEEEeCCCCc--eEeecCCCCCCC--cc
Q 013179 105 WVLDTDIWQ--WSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLE--WMQLPVTGSVPP--PR 178 (448)
Q Consensus 105 ~~~d~~t~~--W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~p~--~r 178 (448)
+.+|.+|++ |+.-.. ... .+.-++.++.+|+..+ ...++.+|+.+++ |+.-. ..|. .+
T Consensus 133 ~ald~~tG~~~W~~~~~-----~~~--~ssP~v~~~~v~v~~~------~g~l~ald~~tG~~~W~~~~---~~~~~~~~ 196 (394)
T PRK11138 133 YALNAEDGEVAWQTKVA-----GEA--LSRPVVSDGLVLVHTS------NGMLQALNESDGAVKWTVNL---DVPSLTLR 196 (394)
T ss_pred EEEECCCCCCcccccCC-----Cce--ecCCEEECCEEEEECC------CCEEEEEEccCCCEeeeecC---CCCccccc
Confidence 999998764 866432 111 2222333457777432 1358999998766 77643 2221 12
Q ss_pred CCceeEEeCCEEEEEcccCCCCCccCceeeecccccccCCC--CceEEecC--CCCCCCCC---ceeEEEEeCCEEEEEc
Q 013179 179 CGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENET--PGWTQLKL--PGQAPSSR---CGHTITSGGHYLLLFG 251 (448)
Q Consensus 179 ~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~~~~~~~yd~~~--~~W~~~~~--~g~~p~~r---~~~~~~~~~~~i~v~G 251 (448)
...+-+..++.+|+-.+.. .++. +|+++ ..|+.-.. .+.....| ...+-++.++.+|+.+
T Consensus 197 ~~~sP~v~~~~v~~~~~~g-------~v~a------~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~ 263 (394)
T PRK11138 197 GESAPATAFGGAIVGGDNG-------RVSA------VLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALA 263 (394)
T ss_pred CCCCCEEECCEEEEEcCCC-------EEEE------EEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEE
Confidence 2233344567776643321 1222 35444 35764221 00000001 1123456788888865
Q ss_pred CCCCCCCcccccceeCcEEEEEcCCC--ceEEeccCCCCCCCccceEEEEECCEEEEEcc
Q 013179 252 GHGTGGWLSRYDIYYNDTIILDRLSA--QWKRLPIGNEPPPARAYHSMTCLGSLYLLFGG 309 (448)
Q Consensus 252 G~~~~~~~~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG 309 (448)
.. ..++.+|+.+. .|+.-.. . . ...+..+++||+...
T Consensus 264 ~~-------------g~l~ald~~tG~~~W~~~~~--~---~---~~~~~~~~~vy~~~~ 302 (394)
T PRK11138 264 YN-------------GNLVALDLRSGQIVWKREYG--S---V---NDFAVDGGRIYLVDQ 302 (394)
T ss_pred cC-------------CeEEEEECCCCCEEEeecCC--C---c---cCcEEECCEEEEEcC
Confidence 21 35899999876 4876321 1 1 124566888888753
No 54
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.98 E-value=0.24 Score=49.04 Aligned_cols=195 Identities=12% Similarity=0.069 Sum_probs=102.9
Q ss_pred ceEEEEcCCCc--EEeeeecCCCCCCCCCCCCCcceeEEEECCeEEEEcccCCCCCCCcEEEEECCCCc--EEEeecCCC
Q 013179 47 DVVVYDIDNKL--WFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQ--WSELTSFGD 122 (448)
Q Consensus 47 ~~~~yd~~~~~--W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~--W~~~~~~~~ 122 (448)
.++.+|+++++ |+.-... +....+...+-++.++.+|+..+ + ..++.+|+++++ |+.-..
T Consensus 171 ~l~ald~~tG~~~W~~~~~~-------~~~~~~~~~sP~v~~~~v~~~~~-~-----g~v~a~d~~~G~~~W~~~~~--- 234 (394)
T PRK11138 171 MLQALNESDGAVKWTVNLDV-------PSLTLRGESAPATAFGGAIVGGD-N-----GRVSAVLMEQGQLIWQQRIS--- 234 (394)
T ss_pred EEEEEEccCCCEeeeecCCC-------CcccccCCCCCEEECCEEEEEcC-C-----CEEEEEEccCChhhheeccc---
Confidence 58889998875 7653211 00111222333445666666433 2 347888988764 764321
Q ss_pred CCCc-----C---cccEEEEECCcEEEEEecCCCCccCCceEEEeCCCCc--eEeecCCCCCCCccCCceeEEeCCEEEE
Q 013179 123 LPSP-----R---DFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLE--WMQLPVTGSVPPPRCGHTATMVEKRLLI 192 (448)
Q Consensus 123 ~p~~-----r---~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~p~~r~~~~~~~~~~~lyv 192 (448)
.|.. | ...+.++. ++.+|+.+. + ..++.+|+.+++ |+.-. ... ...+..++++|+
T Consensus 235 ~~~~~~~~~~~~~~~~sP~v~-~~~vy~~~~-~-----g~l~ald~~tG~~~W~~~~-----~~~---~~~~~~~~~vy~ 299 (394)
T PRK11138 235 QPTGATEIDRLVDVDTTPVVV-GGVVYALAY-N-----GNLVALDLRSGQIVWKREY-----GSV---NDFAVDGGRIYL 299 (394)
T ss_pred cCCCccchhcccccCCCcEEE-CCEEEEEEc-C-----CeEEEEECCCCCEEEeecC-----CCc---cCcEEECCEEEE
Confidence 1111 1 11222334 458887652 2 358999998765 87532 111 134566889998
Q ss_pred EcccCCCCCccCceeeecccccccCCCC--ceEEecCCCCCCCCCceeEEEEeCCEEEEEcCCCCCCCcccccceeCcEE
Q 013179 193 YGGRGGGGPIMGDLWALKGLIEEENETP--GWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTI 270 (448)
Q Consensus 193 ~GG~~~~~~~~~d~~~~~~~~~yd~~~~--~W~~~~~~g~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~ 270 (448)
..... .++.+ |+++. .|+.-. ...+...+.++.++.||+.... ..++
T Consensus 300 ~~~~g-------~l~al------d~~tG~~~W~~~~-----~~~~~~~sp~v~~g~l~v~~~~-------------G~l~ 348 (394)
T PRK11138 300 VDQND-------RVYAL------DTRGGVELWSQSD-----LLHRLLTAPVLYNGYLVVGDSE-------------GYLH 348 (394)
T ss_pred EcCCC-------eEEEE------ECCCCcEEEcccc-----cCCCcccCCEEECCEEEEEeCC-------------CEEE
Confidence 75321 13333 66544 475422 1122233445678888875421 2488
Q ss_pred EEEcCCCc--eEEeccCCCCCCCccceEEEEECCEEEEEc
Q 013179 271 ILDRLSAQ--WKRLPIGNEPPPARAYHSMTCLGSLYLLFG 308 (448)
Q Consensus 271 ~yd~~~~~--W~~~~~~~~~p~~r~~~~~~~~~~~i~v~G 308 (448)
++|+.+.+ |+.--. ......+.++.+++|||-.
T Consensus 349 ~ld~~tG~~~~~~~~~-----~~~~~s~P~~~~~~l~v~t 383 (394)
T PRK11138 349 WINREDGRFVAQQKVD-----SSGFLSEPVVADDKLLIQA 383 (394)
T ss_pred EEECCCCCEEEEEEcC-----CCcceeCCEEECCEEEEEe
Confidence 89988765 443111 1123444556788877753
No 55
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=96.72 E-value=0.064 Score=51.86 Aligned_cols=119 Identities=24% Similarity=0.361 Sum_probs=75.6
Q ss_pred ECCcEEEEEcCCCCCcccCceEEEEcCCCcEEeeeecCCCCCCCCCCCCCcceeEEEECCeEEEEcccCCCCCCC-----
Q 013179 28 IGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLG----- 102 (448)
Q Consensus 28 ~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~lyv~GG~~~~~~~~----- 102 (448)
+.+.+|+.++.. ..+.+||+.+..-...| .++.+...-.++.++++||++..........
T Consensus 74 l~gskIv~~d~~------~~t~vyDt~t~av~~~P---------~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~ 138 (342)
T PF07893_consen 74 LHGSKIVAVDQS------GRTLVYDTDTRAVATGP---------RLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFP 138 (342)
T ss_pred ecCCeEEEEcCC------CCeEEEECCCCeEeccC---------CCCCCCcceEEEEeCCeEEEeeccCccccccCccce
Confidence 445788888664 34889999998766554 3455556667788899999998764321111
Q ss_pred cEEEE--E--------CCCCcEEEeecCCCCCCcCcc-------cEEEEECCcEEEE-EecCCCCccCCceEEEeCCCCc
Q 013179 103 DFWVL--D--------TDIWQWSELTSFGDLPSPRDF-------AAASAIGNRKIVM-YGGWDGKKWLSDVYVLDTISLE 164 (448)
Q Consensus 103 ~~~~~--d--------~~t~~W~~~~~~~~~p~~r~~-------~~~~~~~~~~iyv-~GG~~~~~~~~~v~~yd~~t~~ 164 (448)
.++.+ + .....|+.+++ +|-.+.. .+-+++++..|+| .-|.. ...|.||..+.+
T Consensus 139 ~FE~l~~~~~~~~~~~~~~w~W~~LP~---PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~-----~GTysfDt~~~~ 210 (342)
T PF07893_consen 139 CFEALVYRPPPDDPSPEESWSWRSLPP---PPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR-----WGTYSFDTESHE 210 (342)
T ss_pred eEEEeccccccccccCCCcceEEcCCC---CCccccCCcccceEEEEEEecCCeEEEEecCCc-----eEEEEEEcCCcc
Confidence 45554 3 34557888874 3333221 2223334558888 33321 348999999999
Q ss_pred eEeec
Q 013179 165 WMQLP 169 (448)
Q Consensus 165 W~~~~ 169 (448)
|++.-
T Consensus 211 W~~~G 215 (342)
T PF07893_consen 211 WRKHG 215 (342)
T ss_pred eeecc
Confidence 99873
No 56
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=96.46 E-value=0.041 Score=51.25 Aligned_cols=112 Identities=13% Similarity=0.123 Sum_probs=71.1
Q ss_pred ccCceEEEEcCCCcEEeeeecCCCCCCCCCCCCCcceeEEE-ECCeEEEEcccCCCC-CCCcEEEEECCCCcEEEeecC-
Q 013179 44 FLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVA-IDCHMFIFGGRFGSR-RLGDFWVLDTDIWQWSELTSF- 120 (448)
Q Consensus 44 ~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~-~~~~lyv~GG~~~~~-~~~~~~~~d~~t~~W~~~~~~- 120 (448)
....+..||+.+.+|..+... -.... .++.. -+++||+.|-.+-.. ....+-.||..+.+|..+...
T Consensus 14 ~C~~lC~yd~~~~qW~~~g~~---------i~G~V-~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~ 83 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQWSSPGNG---------ISGTV-TDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGS 83 (281)
T ss_pred CCCEEEEEECCCCEeecCCCC---------ceEEE-EEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcc
Confidence 467899999999999987521 11111 22222 367888888665433 456689999999999988762
Q ss_pred -CCCCCcCcccEEEEECCcEEEEEecCCCCccCCceEEEeCCCCceEeec
Q 013179 121 -GDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLP 169 (448)
Q Consensus 121 -~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~ 169 (448)
.++|.+.............+++.|.. .. -..-+..| +-.+|..+.
T Consensus 84 s~~ipgpv~a~~~~~~d~~~~~~aG~~-~~-g~~~l~~~--dGs~W~~i~ 129 (281)
T PF12768_consen 84 SNSIPGPVTALTFISNDGSNFWVAGRS-AN-GSTFLMKY--DGSSWSSIG 129 (281)
T ss_pred cccCCCcEEEEEeeccCCceEEEecee-cC-CCceEEEE--cCCceEecc
Confidence 34666653333333333467777765 21 12346666 467999886
No 57
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.45 E-value=0.66 Score=41.95 Aligned_cols=185 Identities=16% Similarity=0.203 Sum_probs=103.2
Q ss_pred EEECCcEEEEEcCCCCCcccCceEEEEcCCCc--EEeeeecCCCCCCCCCCCCCcceeEEEECCeEEEEcccCCCCCCCc
Q 013179 26 VNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKL--WFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGD 103 (448)
Q Consensus 26 ~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~lyv~GG~~~~~~~~~ 103 (448)
.+..++.+|+..+ ...++++|+.+++ |+.-. ..+........++.+|+.... +.
T Consensus 32 ~~~~~~~v~~~~~------~~~l~~~d~~tG~~~W~~~~------------~~~~~~~~~~~~~~v~v~~~~------~~ 87 (238)
T PF13360_consen 32 AVPDGGRVYVASG------DGNLYALDAKTGKVLWRFDL------------PGPISGAPVVDGGRVYVGTSD------GS 87 (238)
T ss_dssp EEEETTEEEEEET------TSEEEEEETTTSEEEEEEEC------------SSCGGSGEEEETTEEEEEETT------SE
T ss_pred EEEeCCEEEEEcC------CCEEEEEECCCCCEEEEeec------------cccccceeeecccccccccce------ee
Confidence 3334478888743 3569999998885 65532 112222247778899888621 26
Q ss_pred EEEEECCCCc--EE-EeecCCCCCCcCcccEEEEECCcEEEEEecCCCCccCCceEEEeCCCCc--eEeecCCCCCCCcc
Q 013179 104 FWVLDTDIWQ--WS-ELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLE--WMQLPVTGSVPPPR 178 (448)
Q Consensus 104 ~~~~d~~t~~--W~-~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~p~~r 178 (448)
++.+|..+++ |+ ........+ .+......+. ++.+|+... ...++.+|+.+++ |+.-. ..+...
T Consensus 88 l~~~d~~tG~~~W~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~------~g~l~~~d~~tG~~~w~~~~---~~~~~~ 156 (238)
T PF13360_consen 88 LYALDAKTGKVLWSIYLTSSPPAG-VRSSSSPAVD-GDRLYVGTS------SGKLVALDPKTGKLLWKYPV---GEPRGS 156 (238)
T ss_dssp EEEEETTTSCEEEEEEE-SSCTCS-TB--SEEEEE-TTEEEEEET------CSEEEEEETTTTEEEEEEES---STT-SS
T ss_pred eEecccCCcceeeeeccccccccc-cccccCceEe-cCEEEEEec------cCcEEEEecCCCcEEEEeec---CCCCCC
Confidence 9999988775 88 343211111 2233333334 336766543 3458999988765 66543 221111
Q ss_pred --------CCceeEEeCCEEEEEcccCCCCCccCceeeecccccccCCCCc--eEEecCCCCCCCCCceeEEEEeCCEEE
Q 013179 179 --------CGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPG--WTQLKLPGQAPSSRCGHTITSGGHYLL 248 (448)
Q Consensus 179 --------~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~~~~~~~yd~~~~~--W~~~~~~g~~p~~r~~~~~~~~~~~i~ 248 (448)
.....+..++.+|+..+... +..+|.++.+ |+.. ..+ ........++.+|
T Consensus 157 ~~~~~~~~~~~~~~~~~~~v~~~~~~g~-------------~~~~d~~tg~~~w~~~-~~~------~~~~~~~~~~~l~ 216 (238)
T PF13360_consen 157 SPISSFSDINGSPVISDGRVYVSSGDGR-------------VVAVDLATGEKLWSKP-ISG------IYSLPSVDGGTLY 216 (238)
T ss_dssp --EEEETTEEEEEECCTTEEEEECCTSS-------------EEEEETTTTEEEEEEC-SS-------ECECEECCCTEEE
T ss_pred cceeeecccccceEEECCEEEEEcCCCe-------------EEEEECCCCCEEEEec-CCC------ccCCceeeCCEEE
Confidence 11233334678888776531 1222777776 7443 211 1112445677888
Q ss_pred EEcCCCCCCCcccccceeCcEEEEEcCCCc
Q 013179 249 LFGGHGTGGWLSRYDIYYNDTIILDRLSAQ 278 (448)
Q Consensus 249 v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~ 278 (448)
+.. .. ..++++|+.+.+
T Consensus 217 ~~~-~~------------~~l~~~d~~tG~ 233 (238)
T PF13360_consen 217 VTS-SD------------GRLYALDLKTGK 233 (238)
T ss_dssp EEE-TT------------TEEEEEETTTTE
T ss_pred EEe-CC------------CEEEEEECCCCC
Confidence 876 22 469999998874
No 58
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.11 E-value=1.6 Score=42.88 Aligned_cols=197 Identities=17% Similarity=0.182 Sum_probs=98.6
Q ss_pred CceEEEEcCCCc--EEeeeecCCCCCCCCCCCCCcceeEEEECCeEEEEcccCCCCCCCcEEEEECCCCc--EEEeecCC
Q 013179 46 SDVVVYDIDNKL--WFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQ--WSELTSFG 121 (448)
Q Consensus 46 ~~~~~yd~~~~~--W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~--W~~~~~~~ 121 (448)
..++.+|+++++ |+.-... +....+...+.+..++.+| +|... ..+..+|+.+++ |+.-..
T Consensus 155 g~l~a~d~~tG~~~W~~~~~~-------~~~~~~~~~sp~~~~~~v~-~~~~~-----g~v~ald~~tG~~~W~~~~~-- 219 (377)
T TIGR03300 155 GRLTALDAATGERLWTYSRVT-------PALTLRGSASPVIADGGVL-VGFAG-----GKLVALDLQTGQPLWEQRVA-- 219 (377)
T ss_pred CeEEEEEcCCCceeeEEccCC-------CceeecCCCCCEEECCEEE-EECCC-----CEEEEEEccCCCEeeeeccc--
Confidence 348889988764 7653211 0001122233455566554 44322 258899998764 754321
Q ss_pred CCCCcCc-------ccEEEEECCcEEEEEecCCCCccCCceEEEeCCCCc--eEeecCCCCCCCccCCceeEEeCCEEEE
Q 013179 122 DLPSPRD-------FAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLE--WMQLPVTGSVPPPRCGHTATMVEKRLLI 192 (448)
Q Consensus 122 ~~p~~r~-------~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~p~~r~~~~~~~~~~~lyv 192 (448)
.|.... ..+..++.++.+|+... ...++.||+.+++ |+.-. + ...+.+..++++|+
T Consensus 220 -~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~------~g~l~a~d~~tG~~~W~~~~-----~---~~~~p~~~~~~vyv 284 (377)
T TIGR03300 220 -LPKGRTELERLVDVDGDPVVDGGQVYAVSY------QGRVAALDLRSGRVLWKRDA-----S---SYQGPAVDDNRLYV 284 (377)
T ss_pred -cCCCCCchhhhhccCCccEEECCEEEEEEc------CCEEEEEECCCCcEEEeecc-----C---CccCceEeCCEEEE
Confidence 111110 11122233458887542 1358999988764 65421 1 11234456888888
Q ss_pred EcccCCCCCccCceeeecccccccCCCC--ceEEecCCCCCCCCCceeEEEEeCCEEEEEcCCCCCCCcccccceeCcEE
Q 013179 193 YGGRGGGGPIMGDLWALKGLIEEENETP--GWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTI 270 (448)
Q Consensus 193 ~GG~~~~~~~~~d~~~~~~~~~yd~~~~--~W~~~~~~g~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~ 270 (448)
.... ..+ ..+|..+. .|+.-.. ..+...+.++.++.||+.. .+ ..++
T Consensus 285 ~~~~-------G~l------~~~d~~tG~~~W~~~~~-----~~~~~ssp~i~g~~l~~~~-~~------------G~l~ 333 (377)
T TIGR03300 285 TDAD-------GVV------VALDRRSGSELWKNDEL-----KYRQLTAPAVVGGYLVVGD-FE------------GYLH 333 (377)
T ss_pred ECCC-------CeE------EEEECCCCcEEEccccc-----cCCccccCEEECCEEEEEe-CC------------CEEE
Confidence 6421 112 33365543 4654221 1122223455677787743 11 3588
Q ss_pred EEEcCCCc--eEEeccCCCCCCCccceEEEEECCEEEEEc
Q 013179 271 ILDRLSAQ--WKRLPIGNEPPPARAYHSMTCLGSLYLLFG 308 (448)
Q Consensus 271 ~yd~~~~~--W~~~~~~~~~p~~r~~~~~~~~~~~i~v~G 308 (448)
++|+.+.+ |+ ++.. ......+.+..+++||+.+
T Consensus 334 ~~d~~tG~~~~~-~~~~----~~~~~~sp~~~~~~l~v~~ 368 (377)
T TIGR03300 334 WLSREDGSFVAR-LKTD----GSGIASPPVVVGDGLLVQT 368 (377)
T ss_pred EEECCCCCEEEE-EEcC----CCccccCCEEECCEEEEEe
Confidence 88987654 43 2221 1123444567788877554
No 59
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=96.04 E-value=0.32 Score=47.09 Aligned_cols=126 Identities=17% Similarity=0.141 Sum_probs=76.2
Q ss_pred CcEEEEEecCCCCccCCceEEEeCCCCceEeecCCCCCCCccCCceeEEeCCEEEEEcccCCCCCccCceeeeccccccc
Q 013179 137 NRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEE 216 (448)
Q Consensus 137 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~~~~~~~yd 216 (448)
+.+|+.++.. .....||+++..-...+ .++.+.....++.++++||++................-++..|+
T Consensus 76 gskIv~~d~~------~~t~vyDt~t~av~~~P---~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~ 146 (342)
T PF07893_consen 76 GSKIVAVDQS------GRTLVYDTDTRAVATGP---RLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYR 146 (342)
T ss_pred CCeEEEEcCC------CCeEEEECCCCeEeccC---CCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEeccc
Confidence 4488888553 33789999999877666 67777777778888999999998754321110000001112223
Q ss_pred --------CCCCceEEecCCCCCCCCCc-------eeEEEEe-CCEEEE-EcCCCCCCCcccccceeCcEEEEEcCCCce
Q 013179 217 --------NETPGWTQLKLPGQAPSSRC-------GHTITSG-GHYLLL-FGGHGTGGWLSRYDIYYNDTIILDRLSAQW 279 (448)
Q Consensus 217 --------~~~~~W~~~~~~g~~p~~r~-------~~~~~~~-~~~i~v-~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W 279 (448)
...-.|+.++ .+|..+. -.+.+++ +..|+| .-|.. .-.|.||+.+.+|
T Consensus 147 ~~~~~~~~~~~w~W~~LP---~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~------------~GTysfDt~~~~W 211 (342)
T PF07893_consen 147 PPPDDPSPEESWSWRSLP---PPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR------------WGTYSFDTESHEW 211 (342)
T ss_pred cccccccCCCcceEEcCC---CCCccccCCcccceEEEEEEecCCeEEEEecCCc------------eEEEEEEcCCcce
Confidence 3445677766 3332222 1233344 667887 33221 2489999999999
Q ss_pred EEeccCC
Q 013179 280 KRLPIGN 286 (448)
Q Consensus 280 ~~~~~~~ 286 (448)
+++..-.
T Consensus 212 ~~~GdW~ 218 (342)
T PF07893_consen 212 RKHGDWM 218 (342)
T ss_pred eecccee
Confidence 9996643
No 60
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=95.99 E-value=0.082 Score=49.28 Aligned_cols=113 Identities=19% Similarity=0.236 Sum_probs=69.8
Q ss_pred CCCcEEEEECCCCcEEEeecCCCCCCcCcccEEEEECCcEEEEEecCCCCc-cCCceEEEeCCCCceEeecCC--CCCCC
Q 013179 100 RLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKK-WLSDVYVLDTISLEWMQLPVT--GSVPP 176 (448)
Q Consensus 100 ~~~~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~-~~~~v~~yd~~t~~W~~~~~~--~~~p~ 176 (448)
.+..++.||+.+.+|..+.. . -.+ .-.++....++++|+.|-..-.. ....+-.||..+.+|..+... ..+|.
T Consensus 14 ~C~~lC~yd~~~~qW~~~g~--~-i~G-~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipg 89 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQWSSPGN--G-ISG-TVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPG 89 (281)
T ss_pred CCCEEEEEECCCCEeecCCC--C-ceE-EEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCC
Confidence 47789999999999998764 1 111 12333334455888887655433 456689999999999988742 24555
Q ss_pred ccCCceeEEe-CCEEEEEcccCCCCCccCceeeecccccccCCCCceEEecC
Q 013179 177 PRCGHTATMV-EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKL 227 (448)
Q Consensus 177 ~r~~~~~~~~-~~~lyv~GG~~~~~~~~~d~~~~~~~~~yd~~~~~W~~~~~ 227 (448)
+......... .+.+++.|.. ..+ -..+..| +..+|+.+..
T Consensus 90 pv~a~~~~~~d~~~~~~aG~~-~~g--------~~~l~~~--dGs~W~~i~~ 130 (281)
T PF12768_consen 90 PVTALTFISNDGSNFWVAGRS-ANG--------STFLMKY--DGSSWSSIGS 130 (281)
T ss_pred cEEEEEeeccCCceEEEecee-cCC--------CceEEEE--cCCceEeccc
Confidence 5422222222 3467777765 222 1233445 5778988863
No 61
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=95.98 E-value=0.45 Score=46.18 Aligned_cols=155 Identities=15% Similarity=0.112 Sum_probs=82.7
Q ss_pred CCCCCCCcEEEEECCcEEEEEcCCCCCcccCceEEEEcCCCcE-EeeeecCCCCCCCCCCCCCcceeEEEECCe-EEEEc
Q 013179 16 VPQPRSGHSAVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLW-FQPECTGNGSNGQVGPGPRAFHIAVAIDCH-MFIFG 93 (448)
Q Consensus 16 ~P~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W-~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~-lyv~G 93 (448)
.|.-+.-.++-+...-.+++.+|+++.- .++..|-.++.- +.+... ..|. ..+++.-++. ..+++
T Consensus 210 ~ps~~~I~sv~FHp~~plllvaG~d~~l---rifqvDGk~N~~lqS~~l~-------~fPi---~~a~f~p~G~~~i~~s 276 (514)
T KOG2055|consen 210 HPSHGGITSVQFHPTAPLLLVAGLDGTL---RIFQVDGKVNPKLQSIHLE-------KFPI---QKAEFAPNGHSVIFTS 276 (514)
T ss_pred CcCcCCceEEEecCCCceEEEecCCCcE---EEEEecCccChhheeeeec-------cCcc---ceeeecCCCceEEEec
Confidence 3444433333334556799999987543 356666666541 111111 1111 1222222444 67777
Q ss_pred ccCCCCCCCcEEEEECCCCcEEEeecCCCCCCcCcccEEEEECCcEEEEEecCCCCccCCceEEEeCCCCceEeecCCCC
Q 013179 94 GRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGS 173 (448)
Q Consensus 94 G~~~~~~~~~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~ 173 (448)
|+. .-++.||+++.+-.++.+...++. +..+...+..++.+.++-|..+. ++.+...|++|..-- .
T Consensus 277 ~rr-----ky~ysyDle~ak~~k~~~~~g~e~-~~~e~FeVShd~~fia~~G~~G~-----I~lLhakT~eli~s~---K 342 (514)
T KOG2055|consen 277 GRR-----KYLYSYDLETAKVTKLKPPYGVEE-KSMERFEVSHDSNFIAIAGNNGH-----IHLLHAKTKELITSF---K 342 (514)
T ss_pred ccc-----eEEEEeeccccccccccCCCCccc-chhheeEecCCCCeEEEcccCce-----EEeehhhhhhhhhee---e
Confidence 754 248999999999999875444442 22222222223345556565443 677777788776422 3
Q ss_pred CCCccCCceeEEeCCEEEEEcccC
Q 013179 174 VPPPRCGHTATMVEKRLLIYGGRG 197 (448)
Q Consensus 174 ~p~~r~~~~~~~~~~~lyv~GG~~ 197 (448)
++......+.......|++.||.+
T Consensus 343 ieG~v~~~~fsSdsk~l~~~~~~G 366 (514)
T KOG2055|consen 343 IEGVVSDFTFSSDSKELLASGGTG 366 (514)
T ss_pred eccEEeeEEEecCCcEEEEEcCCc
Confidence 333334444444456788888864
No 62
>PRK13684 Ycf48-like protein; Provisional
Probab=95.89 E-value=1.8 Score=41.75 Aligned_cols=178 Identities=13% Similarity=0.209 Sum_probs=91.4
Q ss_pred CCeEEEEcccCCCCCCCcEEEEECCCCcEEEeecCCCCCCcCcccEEEEECCcEEEEEecCCCCccCCceEEE-eCCCCc
Q 013179 86 DCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVL-DTISLE 164 (448)
Q Consensus 86 ~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~y-d~~t~~ 164 (448)
++.+|+.|.. ..+++-+-.-.+|+.+.. +..-..+.+....++.++++|. .+. ++.- |....+
T Consensus 142 ~~~~~~~g~~------G~i~~S~DgG~tW~~~~~----~~~g~~~~i~~~~~g~~v~~g~-~G~-----i~~s~~~gg~t 205 (334)
T PRK13684 142 PGTAEMATNV------GAIYRTTDGGKNWEALVE----DAAGVVRNLRRSPDGKYVAVSS-RGN-----FYSTWEPGQTA 205 (334)
T ss_pred CCcceeeecc------ceEEEECCCCCCceeCcC----CCcceEEEEEECCCCeEEEEeC-Cce-----EEEEcCCCCCe
Confidence 3456666532 235665556779998863 2222334444455545554443 221 3332 344467
Q ss_pred eEeecCCCCCCCccCCceeEEe-CCEEEEEcccCCCCCccCceeeecccccccCCCCceEEecCCCCCCCCCceeEEEE-
Q 013179 165 WMQLPVTGSVPPPRCGHTATMV-EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITS- 242 (448)
Q Consensus 165 W~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~d~~~~~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~- 242 (448)
|+.+. .+..+.-++++.. +++++++|....- .+.+ +-...+|+.+..+. .......++++.
T Consensus 206 W~~~~----~~~~~~l~~i~~~~~g~~~~vg~~G~~--------~~~s----~d~G~sW~~~~~~~-~~~~~~l~~v~~~ 268 (334)
T PRK13684 206 WTPHQ----RNSSRRLQSMGFQPDGNLWMLARGGQI--------RFND----PDDLESWSKPIIPE-ITNGYGYLDLAYR 268 (334)
T ss_pred EEEee----CCCcccceeeeEcCCCCEEEEecCCEE--------EEcc----CCCCCccccccCCc-cccccceeeEEEc
Confidence 99885 2333444454444 6788888754210 1100 23456898765211 101112233443
Q ss_pred eCCEEEEEcCCCCCCCcccccceeCcEEEEEcCCCceEEeccCCCCCCCccceEEEEE-CCEEEEEccCC
Q 013179 243 GGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPIGNEPPPARAYHSMTCL-GSLYLLFGGFD 311 (448)
Q Consensus 243 ~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~ 311 (448)
.++.+++.|... -++.-.....+|..++.....| .....++.. +++.|+.|...
T Consensus 269 ~~~~~~~~G~~G-------------~v~~S~d~G~tW~~~~~~~~~~--~~~~~~~~~~~~~~~~~G~~G 323 (334)
T PRK13684 269 TPGEIWAGGGNG-------------TLLVSKDGGKTWEKDPVGEEVP--SNFYKIVFLDPEKGFVLGQRG 323 (334)
T ss_pred CCCCEEEEcCCC-------------eEEEeCCCCCCCeECCcCCCCC--cceEEEEEeCCCceEEECCCc
Confidence 356788887532 2444344567999986532222 234455544 67888887643
No 63
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=95.79 E-value=0.23 Score=48.13 Aligned_cols=150 Identities=16% Similarity=0.203 Sum_probs=86.1
Q ss_pred CeEEEEcccCCCCCCCcEEEEECCCCcEEEeecCCCCCCcCcc-cEEEEECCcE-EEEEecCCCCccCCceEEEeCCCCc
Q 013179 87 CHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDF-AAASAIGNRK-IVMYGGWDGKKWLSDVYVLDTISLE 164 (448)
Q Consensus 87 ~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~p~~r~~-~~~~~~~~~~-iyv~GG~~~~~~~~~v~~yd~~t~~ 164 (448)
-.|.+.+|+++.- .++..|-+++. .+.+ +...++- .+++...+|. ..+++|+.. -+|.||+++.+
T Consensus 225 ~plllvaG~d~~l---rifqvDGk~N~--~lqS---~~l~~fPi~~a~f~p~G~~~i~~s~rrk-----y~ysyDle~ak 291 (514)
T KOG2055|consen 225 APLLLVAGLDGTL---RIFQVDGKVNP--KLQS---IHLEKFPIQKAEFAPNGHSVIFTSGRRK-----YLYSYDLETAK 291 (514)
T ss_pred CceEEEecCCCcE---EEEEecCccCh--hhee---eeeccCccceeeecCCCceEEEecccce-----EEEEeeccccc
Confidence 4688888877532 35666666665 3332 2222222 2222233444 666666533 37999999999
Q ss_pred eEeecCCCCCCCccCCceeEEeCCEEEEEcccCCCCCccCceeeecccccccCCCCceE-EecCCCCCCCCCceeEEEEe
Q 013179 165 WMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWT-QLKLPGQAPSSRCGHTITSG 243 (448)
Q Consensus 165 W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~~~~~~~yd~~~~~W~-~~~~~g~~p~~r~~~~~~~~ 243 (448)
-+++.....++.+-...-.+...+.++++-|..+. ++.+ ...|+.|. .+. ++......+....
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~------I~lL------hakT~eli~s~K----ieG~v~~~~fsSd 355 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGH------IHLL------HAKTKELITSFK----IEGVVSDFTFSSD 355 (514)
T ss_pred cccccCCCCcccchhheeEecCCCCeEEEcccCce------EEee------hhhhhhhhheee----eccEEeeEEEecC
Confidence 99997554445333333334456667777776543 1122 44566663 222 2223333344445
Q ss_pred CCEEEEEcCCCCCCCcccccceeCcEEEEEcCCCc
Q 013179 244 GHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQ 278 (448)
Q Consensus 244 ~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~ 278 (448)
+..|++.||.+ .||++|+..+.
T Consensus 356 sk~l~~~~~~G-------------eV~v~nl~~~~ 377 (514)
T KOG2055|consen 356 SKELLASGGTG-------------EVYVWNLRQNS 377 (514)
T ss_pred CcEEEEEcCCc-------------eEEEEecCCcc
Confidence 66888888764 49999999884
No 64
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=95.45 E-value=2.9 Score=41.00 Aligned_cols=192 Identities=13% Similarity=0.162 Sum_probs=95.2
Q ss_pred ceEEEEcCCCc--EEeeeecCCCCCCCCCCCCCcceeEEEECCeEEEEcccCCCCCCCcEEEEECCCCc--EEEeecCCC
Q 013179 47 DVVVYDIDNKL--WFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQ--WSELTSFGD 122 (448)
Q Consensus 47 ~~~~yd~~~~~--W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~--W~~~~~~~~ 122 (448)
.++.+|+.+++ |+.-. +.. ...+.+..++.+|+..+ ...++.+|+.+++ |+.-.. .
T Consensus 116 ~l~ald~~tG~~~W~~~~-----------~~~-~~~~p~v~~~~v~v~~~------~g~l~a~d~~tG~~~W~~~~~--~ 175 (377)
T TIGR03300 116 EVIALDAEDGKELWRAKL-----------SSE-VLSPPLVANGLVVVRTN------DGRLTALDAATGERLWTYSRV--T 175 (377)
T ss_pred EEEEEECCCCcEeeeecc-----------Cce-eecCCEEECCEEEEECC------CCeEEEEEcCCCceeeEEccC--C
Confidence 47777776663 65421 111 11223345666666432 1348999998764 765432 1
Q ss_pred CCC-cCcccEEEEECCcEEEEEecCCCCccCCceEEEeCCCCc--eEeecCCCCCCCc--------cCCceeEEeCCEEE
Q 013179 123 LPS-PRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLE--WMQLPVTGSVPPP--------RCGHTATMVEKRLL 191 (448)
Q Consensus 123 ~p~-~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~p~~--------r~~~~~~~~~~~ly 191 (448)
.+. .+...+.++.+ +.+| +|..+ ..++.+|+.+++ |+.-. ..+.. ....+.+..++.+|
T Consensus 176 ~~~~~~~~~sp~~~~-~~v~-~~~~~-----g~v~ald~~tG~~~W~~~~---~~~~g~~~~~~~~~~~~~p~~~~~~vy 245 (377)
T TIGR03300 176 PALTLRGSASPVIAD-GGVL-VGFAG-----GKLVALDLQTGQPLWEQRV---ALPKGRTELERLVDVDGDPVVDGGQVY 245 (377)
T ss_pred CceeecCCCCCEEEC-CEEE-EECCC-----CEEEEEEccCCCEeeeecc---ccCCCCCchhhhhccCCccEEECCEEE
Confidence 111 12222333443 3554 44322 248899987764 76421 11111 11233445578888
Q ss_pred EEcccCCCCCccCceeeecccccccCCCC--ceEEecCCCCCCCCCceeEEEEeCCEEEEEcCCCCCCCcccccceeCcE
Q 013179 192 IYGGRGGGGPIMGDLWALKGLIEEENETP--GWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDT 269 (448)
Q Consensus 192 v~GG~~~~~~~~~d~~~~~~~~~yd~~~~--~W~~~~~~g~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v 269 (448)
+.... ..+..||+++. .|+.-. + ...+.++.++++|+.... ..+
T Consensus 246 ~~~~~-------------g~l~a~d~~tG~~~W~~~~-----~---~~~~p~~~~~~vyv~~~~-------------G~l 291 (377)
T TIGR03300 246 AVSYQ-------------GRVAALDLRSGRVLWKRDA-----S---SYQGPAVDDNRLYVTDAD-------------GVV 291 (377)
T ss_pred EEEcC-------------CEEEEEECCCCcEEEeecc-----C---CccCceEeCCEEEEECCC-------------CeE
Confidence 75432 12334466544 365421 1 112344678889887521 358
Q ss_pred EEEEcCCC--ceEEeccCCCCCCCccceEEEEECCEEEEE
Q 013179 270 IILDRLSA--QWKRLPIGNEPPPARAYHSMTCLGSLYLLF 307 (448)
Q Consensus 270 ~~yd~~~~--~W~~~~~~~~~p~~r~~~~~~~~~~~i~v~ 307 (448)
+++|..+. .|+.-... .+...+.+..++++|+.
T Consensus 292 ~~~d~~tG~~~W~~~~~~-----~~~~ssp~i~g~~l~~~ 326 (377)
T TIGR03300 292 VALDRRSGSELWKNDELK-----YRQLTAPAVVGGYLVVG 326 (377)
T ss_pred EEEECCCCcEEEcccccc-----CCccccCEEECCEEEEE
Confidence 89998765 47652211 12223334456777654
No 65
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=95.37 E-value=1.2 Score=39.21 Aligned_cols=99 Identities=21% Similarity=0.315 Sum_probs=49.2
Q ss_pred eEEEECCeEEEEcccCCCCCCCcEEEEECCCCcE--EEeecC-CCCCCcCcccEEEEEC-CcEEEEEecCCCCccCCceE
Q 013179 81 IAVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQW--SELTSF-GDLPSPRDFAAASAIG-NRKIVMYGGWDGKKWLSDVY 156 (448)
Q Consensus 81 ~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~W--~~~~~~-~~~p~~r~~~~~~~~~-~~~iyv~GG~~~~~~~~~v~ 156 (448)
+++...+++|+|-| +.+|+++...... ..+... ..+|. .--++.... ++++|+|-| +..|
T Consensus 11 A~~~~~g~~y~FkG-------~~~w~~~~~~~~~~p~~I~~~w~~~p~--~IDAa~~~~~~~~~yfFkg-------~~yw 74 (194)
T cd00094 11 AVTTLRGELYFFKG-------RYFWRLSPGKPPGSPFLISSFWPSLPS--PVDAAFERPDTGKIYFFKG-------DKYW 74 (194)
T ss_pred eEEEeCCEEEEEeC-------CEEEEEeCCCCCCCCeEhhhhCCCCCC--CccEEEEECCCCEEEEECC-------CEEE
Confidence 44555699999977 2488888752222 222210 11332 223333333 369999965 3477
Q ss_pred EEeCCCCceE---eecCCCCCCC--ccCCceeEEe-CCEEEEEccc
Q 013179 157 VLDTISLEWM---QLPVTGSVPP--PRCGHTATMV-EKRLLIYGGR 196 (448)
Q Consensus 157 ~yd~~t~~W~---~~~~~~~~p~--~r~~~~~~~~-~~~lyv~GG~ 196 (448)
+|+..+..+. .++.- ..|. .....+.... ++++|+|-|.
T Consensus 75 ~~~~~~~~~~~Pk~i~~~-~~~~~~~~iDAA~~~~~~~~~yfFkg~ 119 (194)
T cd00094 75 VYTGKNLEPGYPKPISDL-GFPPTVKQIDAALRWPDNGKTYFFKGD 119 (194)
T ss_pred EEcCcccccCCCcchhhc-CCCCCCCCccEEEEEcCCCEEEEEeCC
Confidence 8876542221 11110 1111 2222222222 5799999884
No 66
>PRK04792 tolB translocation protein TolB; Provisional
Probab=94.54 E-value=5.9 Score=39.95 Aligned_cols=146 Identities=15% Similarity=0.156 Sum_probs=76.4
Q ss_pred CceEEEEcCCCcEEeeeecCCCCCCCCCCCCCcceeEEE-ECCeEEEEcccCCCCCCCcEEEEECCCCcEEEeecCCCCC
Q 013179 46 SDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVA-IDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLP 124 (448)
Q Consensus 46 ~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~p 124 (448)
..+|.+|+.+++-..+... +.. ....... .+.+|++....++ ..++|.+|+.+++.+++....
T Consensus 242 ~~L~~~dl~tg~~~~lt~~---------~g~-~~~~~wSPDG~~La~~~~~~g---~~~Iy~~dl~tg~~~~lt~~~--- 305 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSF---------PGI-NGAPRFSPDGKKLALVLSKDG---QPEIYVVDIATKALTRITRHR--- 305 (448)
T ss_pred cEEEEEECCCCCeEEecCC---------CCC-cCCeeECCCCCEEEEEEeCCC---CeEEEEEECCCCCeEECccCC---
Confidence 5799999998876666422 111 1112222 3445655433322 247999999999988876311
Q ss_pred CcCcccEEEEECCc-EEEEEecCCCCccCCceEEEeCCCCceEeecCCCCCCCccCCceeEEe-CCEEEEEcccCCCCCc
Q 013179 125 SPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMV-EKRLLIYGGRGGGGPI 202 (448)
Q Consensus 125 ~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~ 202 (448)
. .....+...++ .|++.....+ ...+|.+|+.+++++.+...+. ........ +++.+++.+.....
T Consensus 306 -~-~~~~p~wSpDG~~I~f~s~~~g---~~~Iy~~dl~~g~~~~Lt~~g~-----~~~~~~~SpDG~~l~~~~~~~g~-- 373 (448)
T PRK04792 306 -A-IDTEPSWHPDGKSLIFTSERGG---KPQIYRVNLASGKVSRLTFEGE-----QNLGGSITPDGRSMIMVNRTNGK-- 373 (448)
T ss_pred -C-CccceEECCCCCEEEEEECCCC---CceEEEEECCCCCEEEEecCCC-----CCcCeeECCCCCEEEEEEecCCc--
Confidence 1 11112222333 4555433222 2579999999999988852221 11112222 44333343332211
Q ss_pred cCceeeecccccccCCCCceEEec
Q 013179 203 MGDLWALKGLIEEENETPGWTQLK 226 (448)
Q Consensus 203 ~~d~~~~~~~~~yd~~~~~W~~~~ 226 (448)
..+..+|+.+...+.+.
T Consensus 374 -------~~I~~~dl~~g~~~~lt 390 (448)
T PRK04792 374 -------FNIARQDLETGAMQVLT 390 (448)
T ss_pred -------eEEEEEECCCCCeEEcc
Confidence 12344588888877665
No 67
>PRK13684 Ycf48-like protein; Provisional
Probab=94.40 E-value=5.1 Score=38.62 Aligned_cols=239 Identities=13% Similarity=0.098 Sum_probs=113.1
Q ss_pred ceEEeeeCCCCCCCCCCCCCcEEEEECCcEEEEEcCCCCCcccCceEEEEcCCCcEEeeeecCCCCCCCCCCCCCc-cee
Q 013179 3 YWVRASSSDFGGTVPQPRSGHSAVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRA-FHI 81 (448)
Q Consensus 3 ~W~~~~~~~~~g~~P~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~-~h~ 81 (448)
.|++.. +|....-....+...+..+++|-. + .++.=+-.-.+|+.+... .|.... ..+
T Consensus 36 ~W~~~~-------~~~~~~l~~v~F~d~~~g~avG~~-G-----~il~T~DgG~tW~~~~~~--------~~~~~~~l~~ 94 (334)
T PRK13684 36 PWQVID-------LPTEANLLDIAFTDPNHGWLVGSN-R-----TLLETNDGGETWEERSLD--------LPEENFRLIS 94 (334)
T ss_pred CcEEEe-------cCCCCceEEEEEeCCCcEEEEECC-C-----EEEEEcCCCCCceECccC--------Ccccccceee
Confidence 476664 344333344455555667777742 1 122221223479886532 111111 222
Q ss_pred EEEECCeEEEEcccCCCCCCCcEEEEECCCCcEEEeecCCCCCCcCcccEEEEECCcEEEEEecCCCCccCCceEEEeCC
Q 013179 82 AVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTI 161 (448)
Q Consensus 82 ~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~ 161 (448)
....++..|+.|.. ..+++=+-.-.+|+++......|. ..+....+.++.+++.|.. ..+++=+-.
T Consensus 95 v~~~~~~~~~~G~~------g~i~~S~DgG~tW~~~~~~~~~~~--~~~~i~~~~~~~~~~~g~~------G~i~~S~Dg 160 (334)
T PRK13684 95 ISFKGDEGWIVGQP------SLLLHTTDGGKNWTRIPLSEKLPG--SPYLITALGPGTAEMATNV------GAIYRTTDG 160 (334)
T ss_pred eEEcCCcEEEeCCC------ceEEEECCCCCCCeEccCCcCCCC--CceEEEEECCCcceeeecc------ceEEEECCC
Confidence 33335556666531 123443333458998863111222 2233444555567766542 235555555
Q ss_pred CCceEeecCCCCCCCccCCceeEEeCCEEEEEcccCCCCCccCceeeecccccccCCCCceEEecCCCCCCCCCceeEEE
Q 013179 162 SLEWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTIT 241 (448)
Q Consensus 162 t~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~~~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~ 241 (448)
-.+|+.+.. +..-..+.+....+..++..|..+. .+. ..|....+|+.+.. +..+.-++++
T Consensus 161 G~tW~~~~~----~~~g~~~~i~~~~~g~~v~~g~~G~--------i~~---s~~~gg~tW~~~~~----~~~~~l~~i~ 221 (334)
T PRK13684 161 GKNWEALVE----DAAGVVRNLRRSPDGKYVAVSSRGN--------FYS---TWEPGQTAWTPHQR----NSSRRLQSMG 221 (334)
T ss_pred CCCceeCcC----CCcceEEEEEECCCCeEEEEeCCce--------EEE---EcCCCCCeEEEeeC----CCcccceeee
Confidence 679998852 1122333444444444444443321 111 12445578998862 3334444544
Q ss_pred E-eCCEEEEEcCCCCCCCcccccceeCcEEEE--EcCCCceEEeccCCCCCCCccceEEEEE-CCEEEEEccC
Q 013179 242 S-GGHYLLLFGGHGTGGWLSRYDIYYNDTIIL--DRLSAQWKRLPIGNEPPPARAYHSMTCL-GSLYLLFGGF 310 (448)
Q Consensus 242 ~-~~~~i~v~GG~~~~~~~~~~~~~~~~v~~y--d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~i~v~GG~ 310 (448)
. .++.++++|... ..++ +-...+|+.+..... ......++++.. ++.++++|..
T Consensus 222 ~~~~g~~~~vg~~G--------------~~~~~s~d~G~sW~~~~~~~~-~~~~~l~~v~~~~~~~~~~~G~~ 279 (334)
T PRK13684 222 FQPDGNLWMLARGG--------------QIRFNDPDDLESWSKPIIPEI-TNGYGYLDLAYRTPGEIWAGGGN 279 (334)
T ss_pred EcCCCCEEEEecCC--------------EEEEccCCCCCccccccCCcc-ccccceeeEEEcCCCCEEEEcCC
Confidence 4 467888887432 2223 223458997643211 011122333333 5678887754
No 68
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=94.15 E-value=6.6 Score=38.93 Aligned_cols=146 Identities=20% Similarity=0.218 Sum_probs=76.6
Q ss_pred CceEEEEcCCCcEEeeeecCCCCCCCCCCCCCcceeEEEEC-CeEEEEcccCCCCCCCcEEEEECCCCcEEEeecCCCCC
Q 013179 46 SDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAID-CHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLP 124 (448)
Q Consensus 46 ~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~-~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~p 124 (448)
..++++|+.+++-..+... +..... ....-+ ..|++.....+ ..+++.+|+.+...+++......
T Consensus 214 ~~i~v~d~~~g~~~~~~~~---------~~~~~~-~~~spDg~~l~~~~~~~~---~~~i~~~d~~~~~~~~l~~~~~~- 279 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASF---------PGMNGA-PAFSPDGSKLAVSLSKDG---NPDIYVMDLDGKQLTRLTNGPGI- 279 (417)
T ss_pred cEEEEEECCCCCEEEeecC---------CCCccc-eEECCCCCEEEEEECCCC---CccEEEEECCCCCEEECCCCCCC-
Confidence 5689999988876655421 111111 222223 45655433222 24699999999888777532111
Q ss_pred CcCcccEEEEECCc-EEEEEecCCCCccCCceEEEeCCCCceEeecCCCCCCCccCCceeEEe-CCEEEEEcccCCCCCc
Q 013179 125 SPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMV-EKRLLIYGGRGGGGPI 202 (448)
Q Consensus 125 ~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~ 202 (448)
........++ +|++.....+ ...+|.+|..+..++.+...+ ......... +++.+++.......
T Consensus 280 ----~~~~~~s~dg~~l~~~s~~~g---~~~iy~~d~~~~~~~~l~~~~-----~~~~~~~~spdg~~i~~~~~~~~~-- 345 (417)
T TIGR02800 280 ----DTEPSWSPDGKSIAFTSDRGG---SPQIYMMDADGGEVRRLTFRG-----GYNASPSWSPDGDLIAFVHREGGG-- 345 (417)
T ss_pred ----CCCEEECCCCCEEEEEECCCC---CceEEEEECCCCCEEEeecCC-----CCccCeEECCCCCEEEEEEccCCc--
Confidence 1111122233 4555443322 246999999998888775221 122222222 45556665543311
Q ss_pred cCceeeecccccccCCCCceEEec
Q 013179 203 MGDLWALKGLIEEENETPGWTQLK 226 (448)
Q Consensus 203 ~~d~~~~~~~~~yd~~~~~W~~~~ 226 (448)
..+..+|+.+..++.+.
T Consensus 346 -------~~i~~~d~~~~~~~~l~ 362 (417)
T TIGR02800 346 -------FNIAVMDLDGGGERVLT 362 (417)
T ss_pred -------eEEEEEeCCCCCeEEcc
Confidence 23455688887666665
No 69
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=93.95 E-value=4.1 Score=35.83 Aligned_cols=142 Identities=14% Similarity=0.196 Sum_probs=70.2
Q ss_pred EEEEECCcEEEEEcCCCCCcccCceEEEEcCCCcEEeeeecCCCCCCCCCC-CCCcceeEEEEC--CeEEEEcccCCCCC
Q 013179 24 SAVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGP-GPRAFHIAVAID--CHMFIFGGRFGSRR 100 (448)
Q Consensus 24 ~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p-~~R~~h~~~~~~--~~lyv~GG~~~~~~ 100 (448)
+++... +.+|+|-| +.+|+++............. ..| .+..-.++.... +++|+|-|
T Consensus 11 A~~~~~-g~~y~FkG-------~~~w~~~~~~~~~~p~~I~~------~w~~~p~~IDAa~~~~~~~~~yfFkg------ 70 (194)
T cd00094 11 AVTTLR-GELYFFKG-------RYFWRLSPGKPPGSPFLISS------FWPSLPSPVDAAFERPDTGKIYFFKG------ 70 (194)
T ss_pred eEEEeC-CEEEEEeC-------CEEEEEeCCCCCCCCeEhhh------hCCCCCCCccEEEEECCCCEEEEECC------
Confidence 344445 88999977 34888886622221111110 011 122233444433 78999976
Q ss_pred CCcEEEEECCCCcE---EEeecCCCCCC-cCcccEEEEEC-CcEEEEEecCCCCccCCceEEEeCCCCceEee-----cC
Q 013179 101 LGDFWVLDTDIWQW---SELTSFGDLPS-PRDFAAASAIG-NRKIVMYGGWDGKKWLSDVYVLDTISLEWMQL-----PV 170 (448)
Q Consensus 101 ~~~~~~~d~~t~~W---~~~~~~~~~p~-~r~~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~-----~~ 170 (448)
+.+|+|+..+... +.+... ..|. +..--++.... ++++|+|-| +..++||..+++...- ..
T Consensus 71 -~~yw~~~~~~~~~~~Pk~i~~~-~~~~~~~~iDAA~~~~~~~~~yfFkg-------~~y~ry~~~~~~v~~~yP~~i~~ 141 (194)
T cd00094 71 -DKYWVYTGKNLEPGYPKPISDL-GFPPTVKQIDAALRWPDNGKTYFFKG-------DKYWRYDEKTQKMDPGYPKLIET 141 (194)
T ss_pred -CEEEEEcCcccccCCCcchhhc-CCCCCCCCccEEEEEcCCCEEEEEeC-------CEEEEEeCCCccccCCCCcchhh
Confidence 2588888765222 111110 1221 11112333333 579999987 4478888765544211 00
Q ss_pred C-CCCCCccCCceeEEe-CCEEEEEccc
Q 013179 171 T-GSVPPPRCGHTATMV-EKRLLIYGGR 196 (448)
Q Consensus 171 ~-~~~p~~r~~~~~~~~-~~~lyv~GG~ 196 (448)
. ..+|.. . .++... ++++|+|-|.
T Consensus 142 ~w~g~p~~-i-daa~~~~~~~~yfF~g~ 167 (194)
T cd00094 142 DFPGVPDK-V-DAAFRWLDGYYYFFKGD 167 (194)
T ss_pred cCCCcCCC-c-ceeEEeCCCcEEEEECC
Confidence 0 022322 2 233334 4889999774
No 70
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=93.73 E-value=3.7 Score=40.81 Aligned_cols=207 Identities=14% Similarity=0.089 Sum_probs=107.6
Q ss_pred CCcEEEEEcCCCCCcccCceEEEEcCCCcEEeeeecCCCCCCCCCCCCCcceeEEEECCeEEEEcccCCCCC------CC
Q 013179 29 GKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRR------LG 102 (448)
Q Consensus 29 ~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~lyv~GG~~~~~~------~~ 102 (448)
.+++.++++=..++.....++++|+++++...-. .+.++.......-+++.+++........ ..
T Consensus 133 pdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~----------i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 133 PDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG----------IENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp TTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE----------EEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred CCCCEEEEEecCCCCceEEEEEEECCCCcCcCCc----------ccccccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 3466666664444455567999999999543211 1222222222333556666666554333 56
Q ss_pred cEEEEECCCCcEE--EeecCCCCCCcCc-ccEEEEECCcEEEEEecCCCCccCCceEEEeCCCC-----ceEeecCCCCC
Q 013179 103 DFWVLDTDIWQWS--ELTSFGDLPSPRD-FAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISL-----EWMQLPVTGSV 174 (448)
Q Consensus 103 ~~~~~d~~t~~W~--~~~~~~~~p~~r~-~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~-----~W~~~~~~~~~ 174 (448)
.+++..+-+..-. .+-. .+.... ...+....+++..++.-..... .++++.+|.... .|..+. .
T Consensus 203 ~v~~~~~gt~~~~d~lvfe---~~~~~~~~~~~~~s~d~~~l~i~~~~~~~-~s~v~~~d~~~~~~~~~~~~~l~---~- 274 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFE---EPDEPFWFVSVSRSKDGRYLFISSSSGTS-ESEVYLLDLDDGGSPDAKPKLLS---P- 274 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC----TTCTTSEEEEEE-TTSSEEEEEEESSSS-EEEEEEEECCCTTTSS-SEEEEE---E-
T ss_pred EEEEEECCCChHhCeeEEe---ecCCCcEEEEEEecCcccEEEEEEEcccc-CCeEEEEeccccCCCcCCcEEEe---C-
Confidence 7899888777654 3322 223333 2333333444443333222222 478999999875 788875 1
Q ss_pred CCccCCceeEEeCCEEEEEcccCCCCCccCceeeecccccccCCCC---ceEEecCCCCCCCC-CceeEEEEeCCEEEEE
Q 013179 175 PPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETP---GWTQLKLPGQAPSS-RCGHTITSGGHYLLLF 250 (448)
Q Consensus 175 p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~~~~~~~yd~~~~---~W~~~~~~g~~p~~-r~~~~~~~~~~~i~v~ 250 (448)
+..-..+.+...++.+|+....+... ..+..+++... .|..+-. .+.. ..--.+...++.|++.
T Consensus 275 ~~~~~~~~v~~~~~~~yi~Tn~~a~~---------~~l~~~~l~~~~~~~~~~~l~---~~~~~~~l~~~~~~~~~Lvl~ 342 (414)
T PF02897_consen 275 REDGVEYYVDHHGDRLYILTNDDAPN---------GRLVAVDLADPSPAEWWTVLI---PEDEDVSLEDVSLFKDYLVLS 342 (414)
T ss_dssp SSSS-EEEEEEETTEEEEEE-TT-TT----------EEEEEETTSTSGGGEEEEEE-----SSSEEEEEEEEETTEEEEE
T ss_pred CCCceEEEEEccCCEEEEeeCCCCCC---------cEEEEecccccccccceeEEc---CCCCceeEEEEEEECCEEEEE
Confidence 12222233444588999987744322 12223344444 3663321 1222 2333555678888876
Q ss_pred cCCCCCCCcccccceeCcEEEEEcC
Q 013179 251 GGHGTGGWLSRYDIYYNDTIILDRL 275 (448)
Q Consensus 251 GG~~~~~~~~~~~~~~~~v~~yd~~ 275 (448)
-=.+ ....+.++|+.
T Consensus 343 ~~~~----------~~~~l~v~~~~ 357 (414)
T PF02897_consen 343 YREN----------GSSRLRVYDLD 357 (414)
T ss_dssp EEET----------TEEEEEEEETT
T ss_pred EEEC----------CccEEEEEECC
Confidence 5322 34679999998
No 71
>PRK05137 tolB translocation protein TolB; Provisional
Probab=93.18 E-value=10 Score=38.02 Aligned_cols=103 Identities=17% Similarity=0.171 Sum_probs=57.3
Q ss_pred CceEEEEcCCCcEEeeeecCCCCCCCCCCCCCcceeEEEEC-CeEEEEcccCCCCCCCcEEEEECCCCcEEEeecCCCCC
Q 013179 46 SDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAID-CHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLP 124 (448)
Q Consensus 46 ~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~-~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~p 124 (448)
..++.+|+.+++...+... +. ........-+ .+|++.....+ ..++|.+|+.+..-.++.. .+
T Consensus 226 ~~i~~~dl~~g~~~~l~~~---------~g-~~~~~~~SPDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~Lt~---~~ 289 (435)
T PRK05137 226 PRVYLLDLETGQRELVGNF---------PG-MTFAPRFSPDGRKVVMSLSQGG---NTDIYTMDLRSGTTTRLTD---SP 289 (435)
T ss_pred CEEEEEECCCCcEEEeecC---------CC-cccCcEECCCCCEEEEEEecCC---CceEEEEECCCCceEEccC---CC
Confidence 5799999999988776532 11 1112222223 45544433222 2579999999988877753 11
Q ss_pred CcCcccEEEEECCc-EEEEEecCCCCccCCceEEEeCCCCceEeec
Q 013179 125 SPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTISLEWMQLP 169 (448)
Q Consensus 125 ~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~ 169 (448)
. . ........++ +|++.....+ ...+|.+|..+.+.+.+.
T Consensus 290 ~-~-~~~~~~spDG~~i~f~s~~~g---~~~Iy~~d~~g~~~~~lt 330 (435)
T PRK05137 290 A-I-DTSPSYSPDGSQIVFESDRSG---SPQLYVMNADGSNPRRIS 330 (435)
T ss_pred C-c-cCceeEcCCCCEEEEEECCCC---CCeEEEEECCCCCeEEee
Confidence 1 1 1112222344 4444332222 246999999888887775
No 72
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=93.02 E-value=10 Score=37.56 Aligned_cols=161 Identities=16% Similarity=0.145 Sum_probs=81.7
Q ss_pred CCeEEEEcccCCCCCCCcEEEEECCCCcEEEeecCCCCCCcCcccEEEEECCc-EEEEEecCCCCccCCceEEEeCCCCc
Q 013179 86 DCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTISLE 164 (448)
Q Consensus 86 ~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~t~~ 164 (448)
+++.+++...... ...++++|+.+++-..+.. .+... .+.+...++ .|++.....+ ..++|.+|+.+..
T Consensus 200 dg~~la~~~~~~~--~~~i~v~d~~~g~~~~~~~---~~~~~--~~~~~spDg~~l~~~~~~~~---~~~i~~~d~~~~~ 269 (417)
T TIGR02800 200 DGQKLAYVSFESG--KPEIYVQDLATGQREKVAS---FPGMN--GAPAFSPDGSKLAVSLSKDG---NPDIYVMDLDGKQ 269 (417)
T ss_pred CCCEEEEEEcCCC--CcEEEEEECCCCCEEEeec---CCCCc--cceEECCCCCEEEEEECCCC---CccEEEEECCCCC
Confidence 4444444443322 2569999999987766653 22211 122233343 5655443222 2569999999988
Q ss_pred eEeecCCCCCCCccCCceeEEeCC-EEEEEcccCCCCCccCceeeecccccccCCCCceEEecCCCCCCCCCceeEEEE-
Q 013179 165 WMQLPVTGSVPPPRCGHTATMVEK-RLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITS- 242 (448)
Q Consensus 165 W~~~~~~~~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~d~~~~~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~- 242 (448)
.+.+.. .+...... ....++ +|++.....+. .++ +.+|..+..+..+...+ ........
T Consensus 270 ~~~l~~---~~~~~~~~-~~s~dg~~l~~~s~~~g~----~~i------y~~d~~~~~~~~l~~~~-----~~~~~~~~s 330 (417)
T TIGR02800 270 LTRLTN---GPGIDTEP-SWSPDGKSIAFTSDRGGS----PQI------YMMDADGGEVRRLTFRG-----GYNASPSWS 330 (417)
T ss_pred EEECCC---CCCCCCCE-EECCCCCEEEEEECCCCC----ceE------EEEECCCCCEEEeecCC-----CCccCeEEC
Confidence 877752 11111111 111244 44443332211 133 34477787777765322 11122222
Q ss_pred eCCEEEEEcCCCCCCCcccccceeCcEEEEEcCCCceEEecc
Q 013179 243 GGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPI 284 (448)
Q Consensus 243 ~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~ 284 (448)
-+++.+++...... ...++++|+.+..+..+..
T Consensus 331 pdg~~i~~~~~~~~---------~~~i~~~d~~~~~~~~l~~ 363 (417)
T TIGR02800 331 PDGDLIAFVHREGG---------GFNIAVMDLDGGGERVLTD 363 (417)
T ss_pred CCCCEEEEEEccCC---------ceEEEEEeCCCCCeEEccC
Confidence 34555555543321 1469999999877766654
No 73
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=92.82 E-value=6.4 Score=36.14 Aligned_cols=183 Identities=15% Similarity=0.045 Sum_probs=100.6
Q ss_pred CcEEEEEcCCCCCcccCceEEEEcC-----CCcEEeeeecCCCCCCCCCCCCCcceeEEEECCeEEEEcccCCCCCCCcE
Q 013179 30 KSKVVVFGGLVDKRFLSDVVVYDID-----NKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDF 104 (448)
Q Consensus 30 ~~~iyv~GG~~~~~~~~~~~~yd~~-----~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~ 104 (448)
.+++|++.|..+. .++.|.-. .++....- .+|-+-.+...++.++.+|.-=. ..+.+
T Consensus 30 ~~~iy~~~~~~~~----~v~ey~~~~~f~~~~~~~~~~---------~Lp~~~~GtG~vVYngslYY~~~-----~s~~I 91 (250)
T PF02191_consen 30 SEKIYVTSGFSGN----TVYEYRNYEDFLRNGRSSRTY---------KLPYPWQGTGHVVYNGSLYYNKY-----NSRNI 91 (250)
T ss_pred CCCEEEECccCCC----EEEEEcCHhHHhhcCCCceEE---------EEeceeccCCeEEECCcEEEEec-----CCceE
Confidence 4678888887544 34444322 22222211 24555566677778888776532 34679
Q ss_pred EEEECCCCcEE-EeecCCCCCCcCcc------------cEEEEECCcEEEEEecCCCCccCCceEEEeCCC----CceEe
Q 013179 105 WVLDTDIWQWS-ELTSFGDLPSPRDF------------AAASAIGNRKIVMYGGWDGKKWLSDVYVLDTIS----LEWMQ 167 (448)
Q Consensus 105 ~~~d~~t~~W~-~~~~~~~~p~~r~~------------~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t----~~W~~ 167 (448)
.+||+.++.-. ... +|.+... .-.++.++ -|+|+=......-.--+-+.|+.+ .+|..
T Consensus 92 vkydL~t~~v~~~~~----L~~A~~~n~~~y~~~~~t~iD~AvDE~-GLWvIYat~~~~g~ivvskld~~tL~v~~tw~T 166 (250)
T PF02191_consen 92 VKYDLTTRSVVARRE----LPGAGYNNRFPYYWSGYTDIDFAVDEN-GLWVIYATEDNNGNIVVSKLDPETLSVEQTWNT 166 (250)
T ss_pred EEEECcCCcEEEEEE----CCccccccccceecCCCceEEEEEcCC-CEEEEEecCCCCCcEEEEeeCcccCceEEEEEe
Confidence 99999998766 332 3333222 12233344 466554332221112245566664 44552
Q ss_pred ecCCCCCCCccCCceeEEeCCEEEEEcccCCCCCccCceeeecccccccCCCCceEEecCCCCCCCCCceeEEEE---eC
Q 013179 168 LPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITS---GG 244 (448)
Q Consensus 168 ~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~~~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~---~~ 244 (448)
..+.+..+ .+.++-|.||++-....... .-...||+.+++=..+.. ..+.+-..+++.. .+
T Consensus 167 -----~~~k~~~~-naFmvCGvLY~~~s~~~~~~--------~I~yafDt~t~~~~~~~i--~f~~~~~~~~~l~YNP~d 230 (250)
T PF02191_consen 167 -----SYPKRSAG-NAFMVCGVLYATDSYDTRDT--------EIFYAFDTYTGKEEDVSI--PFPNPYGNISMLSYNPRD 230 (250)
T ss_pred -----ccCchhhc-ceeeEeeEEEEEEECCCCCc--------EEEEEEECCCCceeceee--eeccccCceEeeeECCCC
Confidence 33444343 46777899999987764421 234567888777665543 2333333445554 45
Q ss_pred CEEEEEc
Q 013179 245 HYLLLFG 251 (448)
Q Consensus 245 ~~i~v~G 251 (448)
.+||+.-
T Consensus 231 k~LY~wd 237 (250)
T PF02191_consen 231 KKLYAWD 237 (250)
T ss_pred CeEEEEE
Confidence 6898874
No 74
>PRK00178 tolB translocation protein TolB; Provisional
Probab=92.73 E-value=12 Score=37.48 Aligned_cols=145 Identities=13% Similarity=0.097 Sum_probs=75.8
Q ss_pred CceEEEEcCCCcEEeeeecCCCCCCCCCCCCCcceeEEEEC-CeEEEEcccCCCCCCCcEEEEECCCCcEEEeecCCCCC
Q 013179 46 SDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAID-CHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLP 124 (448)
Q Consensus 46 ~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~-~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~p 124 (448)
..++++|+.+++-+.+..... ........-+ .+|++.....+ ..++|++|+.+.+.+++.. .+
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g----------~~~~~~~SpDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~lt~---~~ 286 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEG----------LNGAPAWSPDGSKLAFVLSKDG---NPEIYVMDLASRQLSRVTN---HP 286 (430)
T ss_pred CEEEEEECCCCCEEEccCCCC----------CcCCeEECCCCCEEEEEEccCC---CceEEEEECCCCCeEEccc---CC
Confidence 479999999888776642210 0111122223 45544322222 2579999999999887763 11
Q ss_pred CcCcccEEEEECCc-EEEEEecCCCCccCCceEEEeCCCCceEeecCCCCCCCccCCceeEE-eC-CEEEEEcccCCCCC
Q 013179 125 SPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATM-VE-KRLLIYGGRGGGGP 201 (448)
Q Consensus 125 ~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~-~~-~~lyv~GG~~~~~~ 201 (448)
.. ........++ .|++.....+ ...+|.+|+.+++++++...+ ........ -+ +.|++..... ..
T Consensus 287 -~~-~~~~~~spDg~~i~f~s~~~g---~~~iy~~d~~~g~~~~lt~~~-----~~~~~~~~Spdg~~i~~~~~~~-~~- 354 (430)
T PRK00178 287 -AI-DTEPFWGKDGRTLYFTSDRGG---KPQIYKVNVNGGRAERVTFVG-----NYNARPRLSADGKTLVMVHRQD-GN- 354 (430)
T ss_pred -CC-cCCeEECCCCCEEEEEECCCC---CceEEEEECCCCCEEEeecCC-----CCccceEECCCCCEEEEEEccC-Cc-
Confidence 11 1112222333 5555432222 246999999999988875221 11112222 23 4454443222 11
Q ss_pred ccCceeeecccccccCCCCceEEec
Q 013179 202 IMGDLWALKGLIEEENETPGWTQLK 226 (448)
Q Consensus 202 ~~~d~~~~~~~~~yd~~~~~W~~~~ 226 (448)
..+..+|+.+...+.+.
T Consensus 355 --------~~l~~~dl~tg~~~~lt 371 (430)
T PRK00178 355 --------FHVAAQDLQRGSVRILT 371 (430)
T ss_pred --------eEEEEEECCCCCEEEcc
Confidence 12445588888887775
No 75
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=92.57 E-value=9.5 Score=36.08 Aligned_cols=240 Identities=13% Similarity=0.114 Sum_probs=105.5
Q ss_pred ceEEeeeCCCCCCCCCCCCCcEEEEECCcEEEEEcCCCCCcccCceEEEEcCCCcEEeeeecCCCCCCCCCCCC--Ccce
Q 013179 3 YWVRASSSDFGGTVPQPRSGHSAVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGP--RAFH 80 (448)
Q Consensus 3 ~W~~~~~~~~~g~~P~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~--R~~h 80 (448)
.|+++. +|....-....++..+..|++|-. ..++.=+---.+|...... .+.+ ....
T Consensus 7 ~W~~v~-------l~t~~~l~dV~F~d~~~G~~VG~~------g~il~T~DGG~tW~~~~~~--------~~~~~~~~l~ 65 (302)
T PF14870_consen 7 SWQQVS-------LPTDKPLLDVAFVDPNHGWAVGAY------GTILKTTDGGKTWQPVSLD--------LDNPFDYHLN 65 (302)
T ss_dssp -EEEEE--------S-SS-EEEEEESSSS-EEEEETT------TEEEEESSTTSS-EE-------------S-----EEE
T ss_pred CcEEee-------cCCCCceEEEEEecCCEEEEEecC------CEEEEECCCCccccccccC--------CCccceeeEE
Confidence 588886 455555555555666788888753 1122211123479887632 1222 1223
Q ss_pred eEEEECCeEEEEcccCCCCCCCcEEEEECCCCcEEEeecCCCCCCcCcccEEEEECCcEEEEEecCCCCccCCceEEEeC
Q 013179 81 IAVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDT 160 (448)
Q Consensus 81 ~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~ 160 (448)
++...++..|+.|... -+.+-.-.-.+|++++.. .+.+-..+....++++.++++|.. ..+|+=.-
T Consensus 66 ~I~f~~~~g~ivG~~g------~ll~T~DgG~tW~~v~l~--~~lpgs~~~i~~l~~~~~~l~~~~------G~iy~T~D 131 (302)
T PF14870_consen 66 SISFDGNEGWIVGEPG------LLLHTTDGGKTWERVPLS--SKLPGSPFGITALGDGSAELAGDR------GAIYRTTD 131 (302)
T ss_dssp EEEEETTEEEEEEETT------EEEEESSTTSS-EE------TT-SS-EEEEEEEETTEEEEEETT--------EEEESS
T ss_pred EEEecCCceEEEcCCc------eEEEecCCCCCcEEeecC--CCCCCCeeEEEEcCCCcEEEEcCC------CcEEEeCC
Confidence 4444678899887421 133333356789998742 223333455556666688887643 33666555
Q ss_pred CCCceEeecCCCCCCCccCCceeEEe-CCEEEEEcccCCCCCccCceeeecccccccCCCCceEEecCCCCCCCCCceeE
Q 013179 161 ISLEWMQLPVTGSVPPPRCGHTATMV-EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHT 239 (448)
Q Consensus 161 ~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~d~~~~~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~ 239 (448)
.-.+|+.+... ... .-..+... ++++++++... . -+...|+....|+... .+..|+-.+
T Consensus 132 gG~tW~~~~~~---~~g-s~~~~~r~~dG~~vavs~~G-~-----------~~~s~~~G~~~w~~~~----r~~~~riq~ 191 (302)
T PF14870_consen 132 GGKTWQAVVSE---TSG-SINDITRSSDGRYVAVSSRG-N-----------FYSSWDPGQTTWQPHN----RNSSRRIQS 191 (302)
T ss_dssp TTSSEEEEE-S--------EEEEEE-TTS-EEEEETTS-S-----------EEEEE-TT-SS-EEEE------SSS-EEE
T ss_pred CCCCeeEcccC---Ccc-eeEeEEECCCCcEEEEECcc-c-----------EEEEecCCCccceEEc----cCccceehh
Confidence 66789988521 111 11112222 45655555332 1 1223477888899886 345566666
Q ss_pred EEE-eCCEEEEEcCCCCCCCcccccceeCcEEEEE--cCCCceEEeccCCCCCCCccceE-EEEE-CCEEEEEccCCC
Q 013179 240 ITS-GGHYLLLFGGHGTGGWLSRYDIYYNDTIILD--RLSAQWKRLPIGNEPPPARAYHS-MTCL-GSLYLLFGGFDG 312 (448)
Q Consensus 240 ~~~-~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd--~~~~~W~~~~~~~~~p~~r~~~~-~~~~-~~~i~v~GG~~~ 312 (448)
+.. -++.|++.. ... .+..=+ -...+|.+.... .....++.- ++.. ++++++.||...
T Consensus 192 ~gf~~~~~lw~~~-~Gg------------~~~~s~~~~~~~~w~~~~~~--~~~~~~~~ld~a~~~~~~~wa~gg~G~ 254 (302)
T PF14870_consen 192 MGFSPDGNLWMLA-RGG------------QIQFSDDPDDGETWSEPIIP--IKTNGYGILDLAYRPPNEIWAVGGSGT 254 (302)
T ss_dssp EEE-TTS-EEEEE-TTT------------EEEEEE-TTEEEEE---B-T--TSS--S-EEEEEESSSS-EEEEESTT-
T ss_pred ceecCCCCEEEEe-CCc------------EEEEccCCCCccccccccCC--cccCceeeEEEEecCCCCEEEEeCCcc
Confidence 665 456777765 221 233333 345678773321 112223222 2322 589999998653
No 76
>PRK04922 tolB translocation protein TolB; Provisional
Probab=92.56 E-value=12 Score=37.39 Aligned_cols=187 Identities=15% Similarity=0.092 Sum_probs=93.2
Q ss_pred CceEEEEcCCCcEEeeeecCCCCCCCCCCCCCcceeEEEE-CCeEEEEcccCCCCCCCcEEEEECCCCcEEEeecCCCCC
Q 013179 46 SDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI-DCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLP 124 (448)
Q Consensus 46 ~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~p 124 (448)
..++++|+.+++-..+... +. ........- +.+|++.....+ ..+++.+|+.+++-+++... +
T Consensus 228 ~~l~~~dl~~g~~~~l~~~---------~g-~~~~~~~SpDG~~l~~~~s~~g---~~~Iy~~d~~~g~~~~lt~~---~ 291 (433)
T PRK04922 228 SAIYVQDLATGQRELVASF---------RG-INGAPSFSPDGRRLALTLSRDG---NPEIYVMDLGSRQLTRLTNH---F 291 (433)
T ss_pred cEEEEEECCCCCEEEeccC---------CC-CccCceECCCCCEEEEEEeCCC---CceEEEEECCCCCeEECccC---C
Confidence 4689999998877666422 11 111122222 345554432222 24799999999887776531 1
Q ss_pred CcCcccEEEEECCcE-EEEEecCCCCccCCceEEEeCCCCceEeecCCCCCCCccCCceeEEe--CCEEEEEcccCCCCC
Q 013179 125 SPRDFAAASAIGNRK-IVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMV--EKRLLIYGGRGGGGP 201 (448)
Q Consensus 125 ~~r~~~~~~~~~~~~-iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~ 201 (448)
.. ....+...+++ |++.....+ ...+|.+|..+++.+.+...+ ......... ++.|++..+. ...
T Consensus 292 -~~-~~~~~~spDG~~l~f~sd~~g---~~~iy~~dl~~g~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~~~~-~~~- 359 (433)
T PRK04922 292 -GI-DTEPTWAPDGKSIYFTSDRGG---RPQIYRVAASGGSAERLTFQG-----NYNARASVSPDGKKIAMVHGS-GGQ- 359 (433)
T ss_pred -CC-ccceEECCCCCEEEEEECCCC---CceEEEEECCCCCeEEeecCC-----CCccCEEECCCCCEEEEEECC-CCc-
Confidence 11 11222333444 444433222 246999999998888875322 222222222 3455554432 111
Q ss_pred ccCceeeecccccccCCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCCCCCCCcccccceeCcEEEEEcCCCceEE
Q 013179 202 IMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKR 281 (448)
Q Consensus 202 ~~~d~~~~~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~ 281 (448)
..+..+|+.+.....+... +. .... ...-+++.+++...... ...++.+++....=.+
T Consensus 360 --------~~I~v~d~~~g~~~~Lt~~---~~-~~~p-~~spdG~~i~~~s~~~g---------~~~L~~~~~~g~~~~~ 417 (433)
T PRK04922 360 --------YRIAVMDLSTGSVRTLTPG---SL-DESP-SFAPNGSMVLYATREGG---------RGVLAAVSTDGRVRQR 417 (433)
T ss_pred --------eeEEEEECCCCCeEECCCC---CC-CCCc-eECCCCCEEEEEEecCC---------ceEEEEEECCCCceEE
Confidence 1344558888877766521 11 1111 22234454444432221 1468888886544333
Q ss_pred e
Q 013179 282 L 282 (448)
Q Consensus 282 ~ 282 (448)
+
T Consensus 418 l 418 (433)
T PRK04922 418 L 418 (433)
T ss_pred c
Confidence 3
No 77
>PRK00178 tolB translocation protein TolB; Provisional
Probab=92.56 E-value=12 Score=37.31 Aligned_cols=146 Identities=15% Similarity=0.150 Sum_probs=76.6
Q ss_pred CcEEEEECCCCcEEEeecCCCCCCcCcccEEEEECCc-EEEEEecCCCCccCCceEEEeCCCCceEeecCCCCCCCccCC
Q 013179 102 GDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCG 180 (448)
Q Consensus 102 ~~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~ 180 (448)
..+|++|+.+++-+++.. .+.. ........++ +|++..-.++ ..++|.+|+.+...+++. ..+. . .
T Consensus 223 ~~l~~~~l~~g~~~~l~~---~~g~--~~~~~~SpDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~lt---~~~~-~-~ 289 (430)
T PRK00178 223 PRIFVQNLDTGRREQITN---FEGL--NGAPAWSPDGSKLAFVLSKDG---NPEIYVMDLASRQLSRVT---NHPA-I-D 289 (430)
T ss_pred CEEEEEECCCCCEEEccC---CCCC--cCCeEECCCCCEEEEEEccCC---CceEEEEECCCCCeEEcc---cCCC-C-c
Confidence 469999999998877753 2211 1122222343 4544332222 257999999999988775 2111 1 1
Q ss_pred ceeEEe-CC-EEEEEcccCCCCCccCceeeecccccccCCCCceEEecCCCCCCCCCceeEEEE-eCCEEEEEcCCCCCC
Q 013179 181 HTATMV-EK-RLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITS-GGHYLLLFGGHGTGG 257 (448)
Q Consensus 181 ~~~~~~-~~-~lyv~GG~~~~~~~~~d~~~~~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~-~~~~i~v~GG~~~~~ 257 (448)
...... ++ +|+......+. ..++.+|+.+..++.+...+ ......... .++.|+.......
T Consensus 290 ~~~~~spDg~~i~f~s~~~g~----------~~iy~~d~~~g~~~~lt~~~----~~~~~~~~Spdg~~i~~~~~~~~-- 353 (430)
T PRK00178 290 TEPFWGKDGRTLYFTSDRGGK----------PQIYKVNVNGGRAERVTFVG----NYNARPRLSADGKTLVMVHRQDG-- 353 (430)
T ss_pred CCeEECCCCCEEEEEECCCCC----------ceEEEEECCCCCEEEeecCC----CCccceEECCCCCEEEEEEccCC--
Confidence 112222 33 45544322111 23344588888887775322 111111222 3445555442211
Q ss_pred CcccccceeCcEEEEEcCCCceEEecc
Q 013179 258 WLSRYDIYYNDTIILDRLSAQWKRLPI 284 (448)
Q Consensus 258 ~~~~~~~~~~~v~~yd~~~~~W~~~~~ 284 (448)
..+++++|+.+...+.+..
T Consensus 354 --------~~~l~~~dl~tg~~~~lt~ 372 (430)
T PRK00178 354 --------NFHVAAQDLQRGSVRILTD 372 (430)
T ss_pred --------ceEEEEEECCCCCEEEccC
Confidence 1359999999988887755
No 78
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=92.50 E-value=7.7 Score=34.84 Aligned_cols=196 Identities=16% Similarity=0.244 Sum_probs=103.1
Q ss_pred ceEEEEcCCCc--EEeeeecCCCCCCCCCCCCCccee--EEEECCeEEEEcccCCCCCCCcEEEEECCCCc--EEEeecC
Q 013179 47 DVVVYDIDNKL--WFQPECTGNGSNGQVGPGPRAFHI--AVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQ--WSELTSF 120 (448)
Q Consensus 47 ~~~~yd~~~~~--W~~~~~~~~~~~~~~~p~~R~~h~--~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~--W~~~~~~ 120 (448)
.+..+|+.+++ |+.-. ..+..+.. .+..++.+|+..+ ...++++|+.+++ |+.-
T Consensus 4 ~l~~~d~~tG~~~W~~~~-----------~~~~~~~~~~~~~~~~~v~~~~~------~~~l~~~d~~tG~~~W~~~--- 63 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYDL-----------GPGIGGPVATAVPDGGRVYVASG------DGNLYALDAKTGKVLWRFD--- 63 (238)
T ss_dssp EEEEEETTTTEEEEEEEC-----------SSSCSSEEETEEEETTEEEEEET------TSEEEEEETTTSEEEEEEE---
T ss_pred EEEEEECCCCCEEEEEEC-----------CCCCCCccceEEEeCCEEEEEcC------CCEEEEEECCCCCEEEEee---
Confidence 47788987774 76621 11122222 3447888988832 3469999998886 5553
Q ss_pred CCCCCcCcccEEEEECCcEEEEEecCCCCccCCceEEEeCCCCc--eE-eecCCCCCCCccCCceeEEeCCEEEEEcccC
Q 013179 121 GDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLE--WM-QLPVTGSVPPPRCGHTATMVEKRLLIYGGRG 197 (448)
Q Consensus 121 ~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~--W~-~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~ 197 (448)
++.+.. ...... ++.+|+... -+.++.+|..+++ |+ ........ ..+........++.+|+....
T Consensus 64 --~~~~~~-~~~~~~-~~~v~v~~~------~~~l~~~d~~tG~~~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~- 131 (238)
T PF13360_consen 64 --LPGPIS-GAPVVD-GGRVYVGTS------DGSLYALDAKTGKVLWSIYLTSSPPA-GVRSSSSPAVDGDRLYVGTSS- 131 (238)
T ss_dssp --CSSCGG-SGEEEE-TTEEEEEET------TSEEEEEETTTSCEEEEEEE-SSCTC-STB--SEEEEETTEEEEEETC-
T ss_pred --cccccc-ceeeec-ccccccccc------eeeeEecccCCcceeeeecccccccc-ccccccCceEecCEEEEEecc-
Confidence 222222 223344 458888762 1269999977655 88 34311111 122333444457777766531
Q ss_pred CCCCccCceeeecccccccCCCCc--eEEecCCCCCCC-------CCceeEEEEeCCEEEEEcCCCCCCCcccccceeCc
Q 013179 198 GGGPIMGDLWALKGLIEEENETPG--WTQLKLPGQAPS-------SRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYND 268 (448)
Q Consensus 198 ~~~~~~~d~~~~~~~~~yd~~~~~--W~~~~~~g~~p~-------~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~ 268 (448)
..+..+|+++.+ |+.... ..+. .......++.++.+|+..+.. .
T Consensus 132 ------------g~l~~~d~~tG~~~w~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g-------------~ 184 (238)
T PF13360_consen 132 ------------GKLVALDPKTGKLLWKYPVG--EPRGSSPISSFSDINGSPVISDGRVYVSSGDG-------------R 184 (238)
T ss_dssp ------------SEEEEEETTTTEEEEEEESS--TT-SS--EEEETTEEEEEECCTTEEEEECCTS-------------S
T ss_pred ------------CcEEEEecCCCcEEEEeecC--CCCCCcceeeecccccceEEECCEEEEEcCCC-------------e
Confidence 223344776544 555331 1111 111234455667888877532 2
Q ss_pred EEEEEcCCCc--eEEeccCCCCCCCccceEEEEECCEEEEEc
Q 013179 269 TIILDRLSAQ--WKRLPIGNEPPPARAYHSMTCLGSLYLLFG 308 (448)
Q Consensus 269 v~~yd~~~~~--W~~~~~~~~~p~~r~~~~~~~~~~~i~v~G 308 (448)
+..+|..+.+ |+.. ... ........++.+|+..
T Consensus 185 ~~~~d~~tg~~~w~~~-~~~------~~~~~~~~~~~l~~~~ 219 (238)
T PF13360_consen 185 VVAVDLATGEKLWSKP-ISG------IYSLPSVDGGTLYVTS 219 (238)
T ss_dssp EEEEETTTTEEEEEEC-SS-------ECECEECCCTEEEEEE
T ss_pred EEEEECCCCCEEEEec-CCC------ccCCceeeCCEEEEEe
Confidence 5666988886 8443 211 1222344567777765
No 79
>PRK04792 tolB translocation protein TolB; Provisional
Probab=91.84 E-value=16 Score=36.92 Aligned_cols=147 Identities=17% Similarity=0.248 Sum_probs=77.4
Q ss_pred CcEEEEECCCCcEEEeecCCCCCCcCcccEEEEECCc-EEEEEecCCCCccCCceEEEeCCCCceEeecCCCCCCCccCC
Q 013179 102 GDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCG 180 (448)
Q Consensus 102 ~~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~ 180 (448)
..+|.+|+.+++-+.+.. .+... .+.....++ .|++....++ ..++|.+|+.+++.+++... .. ..
T Consensus 242 ~~L~~~dl~tg~~~~lt~---~~g~~--~~~~wSPDG~~La~~~~~~g---~~~Iy~~dl~tg~~~~lt~~---~~--~~ 308 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTS---FPGIN--GAPRFSPDGKKLALVLSKDG---QPEIYVVDIATKALTRITRH---RA--ID 308 (448)
T ss_pred cEEEEEECCCCCeEEecC---CCCCc--CCeeECCCCCEEEEEEeCCC---CeEEEEEECCCCCeEECccC---CC--Cc
Confidence 569999999988777653 22211 122222333 5655543332 25799999999998887521 11 11
Q ss_pred ceeEE-eCC-EEEEEcccCCCCCccCceeeecccccccCCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCCCCCCC
Q 013179 181 HTATM-VEK-RLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGW 258 (448)
Q Consensus 181 ~~~~~-~~~-~lyv~GG~~~~~~~~~d~~~~~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~~~~~i~v~GG~~~~~~ 258 (448)
..... -++ .|++.....+. .++ +.+|+++.+++.+...+... ...+....++.|+..+ ....
T Consensus 309 ~~p~wSpDG~~I~f~s~~~g~----~~I------y~~dl~~g~~~~Lt~~g~~~---~~~~~SpDG~~l~~~~-~~~g-- 372 (448)
T PRK04792 309 TEPSWHPDGKSLIFTSERGGK----PQI------YRVNLASGKVSRLTFEGEQN---LGGSITPDGRSMIMVN-RTNG-- 372 (448)
T ss_pred cceEECCCCCEEEEEECCCCC----ceE------EEEECCCCCEEEEecCCCCC---cCeeECCCCCEEEEEE-ecCC--
Confidence 11222 244 44444322211 233 44588888888875322111 1112222344555443 2221
Q ss_pred cccccceeCcEEEEEcCCCceEEecc
Q 013179 259 LSRYDIYYNDTIILDRLSAQWKRLPI 284 (448)
Q Consensus 259 ~~~~~~~~~~v~~yd~~~~~W~~~~~ 284 (448)
...+|++|+.+.....+..
T Consensus 373 -------~~~I~~~dl~~g~~~~lt~ 391 (448)
T PRK04792 373 -------KFNIARQDLETGAMQVLTS 391 (448)
T ss_pred -------ceEEEEEECCCCCeEEccC
Confidence 1469999999988877654
No 80
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=91.51 E-value=12 Score=34.88 Aligned_cols=158 Identities=22% Similarity=0.205 Sum_probs=85.6
Q ss_pred CCCCCC---cEEEEECCcEEEEEcCCC-------C----C------cccCceEEEEcCCCcEEeeeecCCCCCCCCCCCC
Q 013179 17 PQPRSG---HSAVNIGKSKVVVFGGLV-------D----K------RFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGP 76 (448)
Q Consensus 17 P~~R~~---~~~~~~~~~~iyv~GG~~-------~----~------~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~ 76 (448)
|.||.| |.++..-++ .+.||||. + . ..-+.+..||.++++-+.+-.. ....+
T Consensus 30 ~~P~SGGDTYNAV~~vDd-~IyFGGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~VrLLWke-------sih~~ 101 (339)
T PF09910_consen 30 PPPTSGGDTYNAVEWVDD-FIYFGGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDSVRLLWKE-------SIHDK 101 (339)
T ss_pred CCCCCCCccceeeeeecc-eEEEeeeecCCceeeeccCCceEEEEeeccceEEEEEcCCCeEEEEEec-------ccCCc
Confidence 556665 667766545 55679983 1 0 1235789999999874333211 22333
Q ss_pred CcceeEE---E---ECCeEEEEcccCCCCCCCcEEEEECCCCcEEEeecCCCCCCcCcccEEEEECCcEEEEEecCCCCc
Q 013179 77 RAFHIAV---A---IDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKK 150 (448)
Q Consensus 77 R~~h~~~---~---~~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~ 150 (448)
+.-..=+ . ++++||+.=+ ++. ..--+|..|..++.-+++.. -|..+ .+ .+.|..+| |=.+-..
T Consensus 102 ~~WaGEVSdIlYdP~~D~LLlAR~-DGh-~nLGvy~ldr~~g~~~~L~~---~ps~K---G~-~~~D~a~F--~i~~~~~ 170 (339)
T PF09910_consen 102 TKWAGEVSDILYDPYEDRLLLARA-DGH-ANLGVYSLDRRTGKAEKLSS---NPSLK---GT-LVHDYACF--GINNFHK 170 (339)
T ss_pred cccccchhheeeCCCcCEEEEEec-CCc-ceeeeEEEcccCCceeeccC---CCCcC---ce-EeeeeEEE--ecccccc
Confidence 3222222 2 2567776632 222 12248999999999888874 33332 12 22232333 2222234
Q ss_pred cCCceEEEeCCCCce--EeecCC----CCCCCccCCceeEEeCCEEEEE
Q 013179 151 WLSDVYVLDTISLEW--MQLPVT----GSVPPPRCGHTATMVEKRLLIY 193 (448)
Q Consensus 151 ~~~~v~~yd~~t~~W--~~~~~~----~~~p~~r~~~~~~~~~~~lyv~ 193 (448)
-.+.+.+||+.+++| +..+.. +.....|....++...+++|.|
T Consensus 171 g~~~i~~~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF 219 (339)
T PF09910_consen 171 GVSGIHCLDLISGKWVIESFDVSLSVDGGPVIRPELGAMASAYNRLFAF 219 (339)
T ss_pred CCceEEEEEccCCeEEEEecccccCCCCCceEeeccccEEEEeeeEEEE
Confidence 467899999999999 555432 2222234445556666665544
No 81
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=91.47 E-value=10 Score=34.07 Aligned_cols=108 Identities=12% Similarity=0.091 Sum_probs=52.5
Q ss_pred CCcEEEEEcCCCCCcccCceEEEEcCCCcEEeeeecCCCCCCCCCCCCCcceeEEEECCeEEEEcccCCCCCCCcEEEEE
Q 013179 29 GKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLD 108 (448)
Q Consensus 29 ~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~~d 108 (448)
.++.++++|+.+ ..+..||..+++-..... .+..........-+++.++.++.+ ..+.+||
T Consensus 19 ~~~~~l~~~~~~-----g~i~i~~~~~~~~~~~~~---------~~~~~i~~~~~~~~~~~l~~~~~~-----~~i~i~~ 79 (289)
T cd00200 19 PDGKLLATGSGD-----GTIKVWDLETGELLRTLK---------GHTGPVRDVAASADGTYLASGSSD-----KTIRLWD 79 (289)
T ss_pred CCCCEEEEeecC-----cEEEEEEeeCCCcEEEEe---------cCCcceeEEEECCCCCEEEEEcCC-----CeEEEEE
Confidence 445677777653 357788887765211110 111111122222244466666643 3588888
Q ss_pred CCCCcEEEeecCCCCCCcCcccEEEEECCcEEEEEecCCCCccCCceEEEeCCCCc
Q 013179 109 TDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLE 164 (448)
Q Consensus 109 ~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~ 164 (448)
..+.+-..... .. ...-.++....++.+++.|+.+ ..+..||+.+.+
T Consensus 80 ~~~~~~~~~~~---~~-~~~i~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~ 126 (289)
T cd00200 80 LETGECVRTLT---GH-TSYVSSVAFSPDGRILSSSSRD-----KTIKVWDVETGK 126 (289)
T ss_pred cCcccceEEEe---cc-CCcEEEEEEcCCCCEEEEecCC-----CeEEEEECCCcE
Confidence 88753222211 11 1112223333444666666533 347888887544
No 82
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=91.27 E-value=2.2 Score=39.21 Aligned_cols=109 Identities=18% Similarity=0.220 Sum_probs=74.2
Q ss_pred EECCcEEEEEecCCCCccCCceEEEeCCCCceEeecCCCCCCCccCCceeEEeCCEEEEEcccCCCCCccCceeeecccc
Q 013179 134 AIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLI 213 (448)
Q Consensus 134 ~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~~~~~~ 213 (448)
...++.+|.--|.-+. +.+.++|+.+++-.+.. ++|..-++-.++.++++||..-=.. ...+
T Consensus 52 ~~~~g~LyESTG~yG~---S~l~~~d~~tg~~~~~~---~l~~~~FgEGit~~~d~l~qLTWk~------------~~~f 113 (264)
T PF05096_consen 52 FLDDGTLYESTGLYGQ---SSLRKVDLETGKVLQSV---PLPPRYFGEGITILGDKLYQLTWKE------------GTGF 113 (264)
T ss_dssp EEETTEEEEEECSTTE---EEEEEEETTTSSEEEEE---E-TTT--EEEEEEETTEEEEEESSS------------SEEE
T ss_pred ecCCCEEEEeCCCCCc---EEEEEEECCCCcEEEEE---ECCccccceeEEEECCEEEEEEecC------------CeEE
Confidence 3356799998887664 56899999999877665 7888889999999999999986443 3445
Q ss_pred cccCCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCCCCCCCcccccceeCcEEEEEcCCCc
Q 013179 214 EEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQ 278 (448)
Q Consensus 214 ~yd~~~~~W~~~~~~g~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~ 278 (448)
.||+++ .+.+. ..+.+..+-.++..+..|++--|. +.++.+||++.+
T Consensus 114 ~yd~~t--l~~~~---~~~y~~EGWGLt~dg~~Li~SDGS-------------~~L~~~dP~~f~ 160 (264)
T PF05096_consen 114 VYDPNT--LKKIG---TFPYPGEGWGLTSDGKRLIMSDGS-------------SRLYFLDPETFK 160 (264)
T ss_dssp EEETTT--TEEEE---EEE-SSS--EEEECSSCEEEE-SS-------------SEEEEE-TTT-S
T ss_pred EEcccc--ceEEE---EEecCCcceEEEcCCCEEEEECCc-------------cceEEECCcccc
Confidence 678765 44444 344556777888888889988773 468999998654
No 83
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=91.06 E-value=11 Score=33.79 Aligned_cols=107 Identities=9% Similarity=0.028 Sum_probs=50.0
Q ss_pred CCcEEEEEcCCCCCcccCceEEEEcCCCcEEeeeecCCCCCCCCCCCCCcceeEEEE-CCeEEEEcccCCCCCCCcEEEE
Q 013179 29 GKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI-DCHMFIFGGRFGSRRLGDFWVL 107 (448)
Q Consensus 29 ~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~~ 107 (448)
.++..+++++.+ ..+.+||..+++-...-. .+.. .-.++... ++++++.|+.+ ..+..|
T Consensus 61 ~~~~~l~~~~~~-----~~i~i~~~~~~~~~~~~~---------~~~~-~i~~~~~~~~~~~~~~~~~~-----~~i~~~ 120 (289)
T cd00200 61 ADGTYLASGSSD-----KTIRLWDLETGECVRTLT---------GHTS-YVSSVAFSPDGRILSSSSRD-----KTIKVW 120 (289)
T ss_pred CCCCEEEEEcCC-----CeEEEEEcCcccceEEEe---------ccCC-cEEEEEEcCCCCEEEEecCC-----CeEEEE
Confidence 444466666643 358888888753221110 0111 11222222 34566665533 358889
Q ss_pred ECCCCcEEEeecCCCCCCcCcccEEEEECCcEEEEEecCCCCccCCceEEEeCCCCc
Q 013179 108 DTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLE 164 (448)
Q Consensus 108 d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~ 164 (448)
|+.+.+-...-. .....-.++....++.+++.|..+ ..+..||+.+.+
T Consensus 121 ~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~~-----~~i~i~d~~~~~ 168 (289)
T cd00200 121 DVETGKCLTTLR----GHTDWVNSVAFSPDGTFVASSSQD-----GTIKLWDLRTGK 168 (289)
T ss_pred ECCCcEEEEEec----cCCCcEEEEEEcCcCCEEEEEcCC-----CcEEEEEccccc
Confidence 988654333221 011111223333334555554422 347888886443
No 84
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=91.05 E-value=6.6 Score=36.12 Aligned_cols=161 Identities=16% Similarity=0.251 Sum_probs=91.8
Q ss_pred EEEEE-CCcEEEEEcCCCCCcccCceEEEEcCCCcEEeeeecCCCCCCCCCCCCCcceeEEEECCeEEEEcccCCCCCCC
Q 013179 24 SAVNI-GKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLG 102 (448)
Q Consensus 24 ~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~lyv~GG~~~~~~~~ 102 (448)
+.+.+ .++.+|.--|..+. +.+..||+.+++-.... ++|..-++=.++.++++||.+-=. ..
T Consensus 48 QGL~~~~~g~LyESTG~yG~---S~l~~~d~~tg~~~~~~---------~l~~~~FgEGit~~~d~l~qLTWk-----~~ 110 (264)
T PF05096_consen 48 QGLEFLDDGTLYESTGLYGQ---SSLRKVDLETGKVLQSV---------PLPPRYFGEGITILGDKLYQLTWK-----EG 110 (264)
T ss_dssp EEEEEEETTEEEEEECSTTE---EEEEEEETTTSSEEEEE---------E-TTT--EEEEEEETTEEEEEESS-----SS
T ss_pred ccEEecCCCEEEEeCCCCCc---EEEEEEECCCCcEEEEE---------ECCccccceeEEEECCEEEEEEec-----CC
Confidence 44444 56778877776554 56889999999754433 356667788889999999998322 23
Q ss_pred cEEEEECCCCcEEEeecCCCCCCcCcccEEEEECCcEEEEEecCCCCccCCceEEEeCCCCceEe-ecCCCCCCCccCCc
Q 013179 103 DFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQ-LPVTGSVPPPRCGH 181 (448)
Q Consensus 103 ~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~-~~~~~~~p~~r~~~ 181 (448)
..++||+.+- +++.. .+.+..+-..+..++ .+++--| .+.++.+||.+.+=.+ +.+ ...+.
T Consensus 111 ~~f~yd~~tl--~~~~~---~~y~~EGWGLt~dg~-~Li~SDG------S~~L~~~dP~~f~~~~~i~V------~~~g~ 172 (264)
T PF05096_consen 111 TGFVYDPNTL--KKIGT---FPYPGEGWGLTSDGK-RLIMSDG------SSRLYFLDPETFKEVRTIQV------TDNGR 172 (264)
T ss_dssp EEEEEETTTT--EEEEE---EE-SSS--EEEECSS-CEEEE-S------SSEEEEE-TTT-SEEEEEE-------EETTE
T ss_pred eEEEEccccc--eEEEE---EecCCcceEEEcCCC-EEEEECC------ccceEEECCcccceEEEEEE------EECCE
Confidence 4899999874 34432 334456677776544 7777655 4568999998654322 221 11222
Q ss_pred eeEEeCCEEEEEcccCCCCCccCceeeecccccccCCCCceEEe
Q 013179 182 TATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQL 225 (448)
Q Consensus 182 ~~~~~~~~lyv~GG~~~~~~~~~d~~~~~~~~~yd~~~~~W~~~ 225 (448)
.+..+|.--|+ .| ..+..+|..+.+.+-||++..-...
T Consensus 173 pv~~LNELE~i-~G-----~IyANVW~td~I~~Idp~tG~V~~~ 210 (264)
T PF05096_consen 173 PVSNLNELEYI-NG-----KIYANVWQTDRIVRIDPETGKVVGW 210 (264)
T ss_dssp E---EEEEEEE-TT-----EEEEEETTSSEEEEEETTT-BEEEE
T ss_pred ECCCcEeEEEE-cC-----EEEEEeCCCCeEEEEeCCCCeEEEE
Confidence 22233333333 22 2344566666677779999887654
No 85
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=90.83 E-value=13 Score=33.93 Aligned_cols=199 Identities=11% Similarity=0.066 Sum_probs=103.5
Q ss_pred CcEEEEEcCCCCCcccCceEEEEcCCCcEEeeeecCCCCCCCCCCCCCcceeEEEE--CCeEEEEcccCCCCCCCcEEEE
Q 013179 30 KSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI--DCHMFIFGGRFGSRRLGDFWVL 107 (448)
Q Consensus 30 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~~ 107 (448)
++.+|+..- .-..++++|+.+++-..+.. +. -.+++.. ++.+|+... ..+..+
T Consensus 11 ~g~l~~~D~-----~~~~i~~~~~~~~~~~~~~~----------~~---~~G~~~~~~~g~l~v~~~-------~~~~~~ 65 (246)
T PF08450_consen 11 DGRLYWVDI-----PGGRIYRVDPDTGEVEVIDL----------PG---PNGMAFDRPDGRLYVADS-------GGIAVV 65 (246)
T ss_dssp TTEEEEEET-----TTTEEEEEETTTTEEEEEES----------SS---EEEEEEECTTSEEEEEET-------TCEEEE
T ss_pred CCEEEEEEc-----CCCEEEEEECCCCeEEEEec----------CC---CceEEEEccCCEEEEEEc-------CceEEE
Confidence 467777642 23569999999987665542 22 3333333 678887754 235777
Q ss_pred ECCCCcEEEeecCC--CCCCcCcccEEEEECCcEEEEEecCCCC-ccC--CceEEEeCCCCceEeecCCCCCCCccCCce
Q 013179 108 DTDIWQWSELTSFG--DLPSPRDFAAASAIGNRKIVMYGGWDGK-KWL--SDVYVLDTISLEWMQLPVTGSVPPPRCGHT 182 (448)
Q Consensus 108 d~~t~~W~~~~~~~--~~p~~r~~~~~~~~~~~~iyv~GG~~~~-~~~--~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~ 182 (448)
|+.+++++.+.... ..+..+. .-.++..++.+|+---.... ... ..++++++. .+.+.+.. .+..| ..
T Consensus 66 d~~~g~~~~~~~~~~~~~~~~~~-ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~--~~~~p---NG 138 (246)
T PF08450_consen 66 DPDTGKVTVLADLPDGGVPFNRP-NDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD--GLGFP---NG 138 (246)
T ss_dssp ETTTTEEEEEEEEETTCSCTEEE-EEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE--EESSE---EE
T ss_pred ecCCCcEEEEeeccCCCcccCCC-ceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec--Ccccc---cc
Confidence 99999999887521 1122222 22344467788875322111 111 569999998 66665531 11111 23
Q ss_pred eEEe--CCEEEEEcccCCCCCccCceeeecccccccCC--CCceEEecCCCCCCCC-CceeEEEE-eCCEEEEEcCCCCC
Q 013179 183 ATMV--EKRLLIYGGRGGGGPIMGDLWALKGLIEEENE--TPGWTQLKLPGQAPSS-RCGHTITS-GGHYLLLFGGHGTG 256 (448)
Q Consensus 183 ~~~~--~~~lyv~GG~~~~~~~~~d~~~~~~~~~yd~~--~~~W~~~~~~g~~p~~-r~~~~~~~-~~~~i~v~GG~~~~ 256 (448)
++.. ++.||+.--.. ..++.|++. +..+.....-...+.. ..--.+++ .++.||+..-.
T Consensus 139 i~~s~dg~~lyv~ds~~------------~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~--- 203 (246)
T PF08450_consen 139 IAFSPDGKTLYVADSFN------------GRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG--- 203 (246)
T ss_dssp EEEETTSSEEEEEETTT------------TEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET---
T ss_pred eEECCcchheeeccccc------------ceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC---
Confidence 3333 34677743221 224445654 3334322110012222 12234555 46789987321
Q ss_pred CCcccccceeCcEEEEEcCCCceEEecc
Q 013179 257 GWLSRYDIYYNDTIILDRLSAQWKRLPI 284 (448)
Q Consensus 257 ~~~~~~~~~~~~v~~yd~~~~~W~~~~~ 284 (448)
.+.|++||++...-..+..
T Consensus 204 ---------~~~I~~~~p~G~~~~~i~~ 222 (246)
T PF08450_consen 204 ---------GGRIVVFDPDGKLLREIEL 222 (246)
T ss_dssp ---------TTEEEEEETTSCEEEEEE-
T ss_pred ---------CCEEEEECCCccEEEEEcC
Confidence 1469999999666666654
No 86
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=90.57 E-value=1.9 Score=35.08 Aligned_cols=84 Identities=15% Similarity=0.208 Sum_probs=56.1
Q ss_pred CcEEEEEecCCCCccCCceEEEeCCCCceEeecCCCCCCCccCCceeEEeCCEEEEEcccCCCCCccCceeeeccccccc
Q 013179 137 NRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEE 216 (448)
Q Consensus 137 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~~~~~~~yd 216 (448)
||.+|-..-. .....+.+.+||+.+.+|+.+..+...........++.++|+|-++.-........-++|.+. |
T Consensus 5 nGvly~~a~~-~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLe-----D 78 (129)
T PF08268_consen 5 NGVLYWLAWS-EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLE-----D 78 (129)
T ss_pred CcEEEeEEEE-CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEee-----c
Confidence 5677776654 233356799999999999999632112344566677778999888776544322345677774 5
Q ss_pred CCCCceEEec
Q 013179 217 NETPGWTQLK 226 (448)
Q Consensus 217 ~~~~~W~~~~ 226 (448)
.++.+|++..
T Consensus 79 ~~k~~Wsk~~ 88 (129)
T PF08268_consen 79 YEKQEWSKKH 88 (129)
T ss_pred cccceEEEEE
Confidence 5678998764
No 87
>PRK04922 tolB translocation protein TolB; Provisional
Probab=90.34 E-value=21 Score=35.75 Aligned_cols=148 Identities=16% Similarity=0.222 Sum_probs=75.9
Q ss_pred CcEEEEECCCCcEEEeecCCCCCCcCcccEEEEECCc-EEEEEecCCCCccCCceEEEeCCCCceEeecCCCCCCCccCC
Q 013179 102 GDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCG 180 (448)
Q Consensus 102 ~~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~ 180 (448)
..++++|+.+++-+++.. .+.. . .+.....++ +|++....++ ..++|.+|+.+++-+++. ..... .
T Consensus 228 ~~l~~~dl~~g~~~~l~~---~~g~-~-~~~~~SpDG~~l~~~~s~~g---~~~Iy~~d~~~g~~~~lt---~~~~~--~ 294 (433)
T PRK04922 228 SAIYVQDLATGQRELVAS---FRGI-N-GAPSFSPDGRRLALTLSRDG---NPEIYVMDLGSRQLTRLT---NHFGI--D 294 (433)
T ss_pred cEEEEEECCCCCEEEecc---CCCC-c-cCceECCCCCEEEEEEeCCC---CceEEEEECCCCCeEECc---cCCCC--c
Confidence 469999999988777753 2221 1 112222333 5554433322 247999999998877664 21111 1
Q ss_pred ceeEEe-CCEEEEEcccCCCCCccCceeeecccccccCCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCCCCCCCc
Q 013179 181 HTATMV-EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWL 259 (448)
Q Consensus 181 ~~~~~~-~~~lyv~GG~~~~~~~~~d~~~~~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~ 259 (448)
...... +++-+++....... .++| .+|..+.+.+.+...+... ...+....++.|++..+...
T Consensus 295 ~~~~~spDG~~l~f~sd~~g~---~~iy------~~dl~~g~~~~lt~~g~~~---~~~~~SpDG~~Ia~~~~~~~---- 358 (433)
T PRK04922 295 TEPTWAPDGKSIYFTSDRGGR---PQIY------RVAASGGSAERLTFQGNYN---ARASVSPDGKKIAMVHGSGG---- 358 (433)
T ss_pred cceEECCCCCEEEEEECCCCC---ceEE------EEECCCCCeEEeecCCCCc---cCEEECCCCCEEEEEECCCC----
Confidence 122222 44433333221111 2333 4477778877775322111 11122223455655543211
Q ss_pred ccccceeCcEEEEEcCCCceEEecc
Q 013179 260 SRYDIYYNDTIILDRLSAQWKRLPI 284 (448)
Q Consensus 260 ~~~~~~~~~v~~yd~~~~~W~~~~~ 284 (448)
...++++|+.+...+.+..
T Consensus 359 ------~~~I~v~d~~~g~~~~Lt~ 377 (433)
T PRK04922 359 ------QYRIAVMDLSTGSVRTLTP 377 (433)
T ss_pred ------ceeEEEEECCCCCeEECCC
Confidence 1379999999888887754
No 88
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=90.17 E-value=15 Score=33.86 Aligned_cols=103 Identities=17% Similarity=0.095 Sum_probs=53.7
Q ss_pred EEEEEcCCCCCcccCceEEEEcCCCcEEeeeecCCCCCCCCCCCCCcceeEEEEC-CeEEEEcccCCCCCCCcEEEEECC
Q 013179 32 KVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAID-CHMFIFGGRFGSRRLGDFWVLDTD 110 (448)
Q Consensus 32 ~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~-~~lyv~GG~~~~~~~~~~~~~d~~ 110 (448)
.+|+.++.+ ..+.+||+.+++-...-.. ...++ ..++.-+ ..+|+.++.. +.+..||+.
T Consensus 2 ~~~~s~~~d-----~~v~~~d~~t~~~~~~~~~--------~~~~~--~l~~~~dg~~l~~~~~~~-----~~v~~~d~~ 61 (300)
T TIGR03866 2 KAYVSNEKD-----NTISVIDTATLEVTRTFPV--------GQRPR--GITLSKDGKLLYVCASDS-----DTIQVIDLA 61 (300)
T ss_pred cEEEEecCC-----CEEEEEECCCCceEEEEEC--------CCCCC--ceEECCCCCEEEEEECCC-----CeEEEEECC
Confidence 466666643 3688899988764332211 11122 1222223 3577776532 358899999
Q ss_pred CCcEEEeecCCCCCCcCcccEEEEECCc-EEEEEecCCCCccCCceEEEeCCCCc
Q 013179 111 IWQWSELTSFGDLPSPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTISLE 164 (448)
Q Consensus 111 t~~W~~~~~~~~~p~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~t~~ 164 (448)
+.+....-+. .+.+ ...+...++ .+|+.++.+ ..+..||+.+.+
T Consensus 62 ~~~~~~~~~~--~~~~---~~~~~~~~g~~l~~~~~~~-----~~l~~~d~~~~~ 106 (300)
T TIGR03866 62 TGEVIGTLPS--GPDP---ELFALHPNGKILYIANEDD-----NLVTVIDIETRK 106 (300)
T ss_pred CCcEEEeccC--CCCc---cEEEECCCCCEEEEEcCCC-----CeEEEEECCCCe
Confidence 8876543211 1111 223333333 566654322 358889988754
No 89
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=90.01 E-value=26 Score=36.22 Aligned_cols=126 Identities=15% Similarity=0.028 Sum_probs=63.5
Q ss_pred EECCcEEEEEcCCCCCcccCceEEEEcCCCc--EEeeeecCCCCCCCCCCCCCcceeEEEECCeEEEEcccCCCCCCCcE
Q 013179 27 NIGKSKVVVFGGLVDKRFLSDVVVYDIDNKL--WFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDF 104 (448)
Q Consensus 27 ~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~ 104 (448)
++.+++||+.... ..++.+|..+++ |+.-....... .+...........++.+++||+... ...+
T Consensus 66 vv~~g~vyv~s~~------g~v~AlDa~TGk~lW~~~~~~~~~~-~~~~~~~~~~rg~av~~~~v~v~t~------dg~l 132 (527)
T TIGR03075 66 LVVDGVMYVTTSY------SRVYALDAKTGKELWKYDPKLPDDV-IPVMCCDVVNRGVALYDGKVFFGTL------DARL 132 (527)
T ss_pred EEECCEEEEECCC------CcEEEEECCCCceeeEecCCCCccc-ccccccccccccceEECCEEEEEcC------CCEE
Confidence 3334788885542 358999998874 86543211000 0000011112234556778876422 1358
Q ss_pred EEEECCCCc--EEEeecCCCCCCcC-cccEEEEECCcEEEEEecCCCCccCCceEEEeCCCCc--eEee
Q 013179 105 WVLDTDIWQ--WSELTSFGDLPSPR-DFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLE--WMQL 168 (448)
Q Consensus 105 ~~~d~~t~~--W~~~~~~~~~p~~r-~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~--W~~~ 168 (448)
+.+|.+|++ |+.-.. +..... ...+.++. ++.||+-...........++.||.++++ |+.-
T Consensus 133 ~ALDa~TGk~~W~~~~~--~~~~~~~~tssP~v~-~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 133 VALDAKTGKVVWSKKNG--DYKAGYTITAAPLVV-KGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred EEEECCCCCEEeecccc--cccccccccCCcEEE-CCEEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 999998876 765321 121111 11222334 4477664322111223468899988765 7644
No 90
>PRK05137 tolB translocation protein TolB; Provisional
Probab=89.89 E-value=23 Score=35.49 Aligned_cols=193 Identities=12% Similarity=0.105 Sum_probs=91.8
Q ss_pred cCceEEEEcCCCcEEeeeecCCCCCCCCCCCCCcceeEEEECCeEEEEcccCCCCCCCcEEEEECCCCcEEEeecCCCCC
Q 013179 45 LSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLP 124 (448)
Q Consensus 45 ~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~p 124 (448)
...+|+.|.....=+.+... .....+....-+++-+++.....+ ...++++|+.+++.+++.. .+
T Consensus 181 ~~~l~~~d~dg~~~~~lt~~----------~~~v~~p~wSpDG~~lay~s~~~g--~~~i~~~dl~~g~~~~l~~---~~ 245 (435)
T PRK05137 181 IKRLAIMDQDGANVRYLTDG----------SSLVLTPRFSPNRQEITYMSYANG--RPRVYLLDLETGQRELVGN---FP 245 (435)
T ss_pred ceEEEEECCCCCCcEEEecC----------CCCeEeeEECCCCCEEEEEEecCC--CCEEEEEECCCCcEEEeec---CC
Confidence 56788888765543444311 111122222334443333332221 2579999999998887763 22
Q ss_pred CcCcccEEEEECCc-EEEEEecCCCCccCCceEEEeCCCCceEeecCCCCCCCccCCceeEEeCCEEEEEcccCCCCCcc
Q 013179 125 SPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIM 203 (448)
Q Consensus 125 ~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~ 203 (448)
... .+.....++ +|++....++ ..++|.+|+.+..-.++. ..+.. .......-+++-++|...... .
T Consensus 246 g~~--~~~~~SPDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~Lt---~~~~~-~~~~~~spDG~~i~f~s~~~g---~ 313 (435)
T PRK05137 246 GMT--FAPRFSPDGRKVVMSLSQGG---NTDIYTMDLRSGTTTRLT---DSPAI-DTSPSYSPDGSQIVFESDRSG---S 313 (435)
T ss_pred Ccc--cCcEECCCCCEEEEEEecCC---CceEEEEECCCCceEEcc---CCCCc-cCceeEcCCCCEEEEEECCCC---C
Confidence 211 122222344 4544433322 357999999998877775 22211 111111223443334332111 1
Q ss_pred CceeeecccccccCCCCceEEecCCCCCCCCCcee-EEEEeCCEEEEEcCCCCCCCcccccceeCcEEEEEcCCCceEEe
Q 013179 204 GDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGH-TITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRL 282 (448)
Q Consensus 204 ~d~~~~~~~~~yd~~~~~W~~~~~~g~~p~~r~~~-~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 282 (448)
.++ +.+|..+...+.+... ..+... .....++.|++.. ...+ ...++++|+.+.....+
T Consensus 314 ~~I------y~~d~~g~~~~~lt~~----~~~~~~~~~SpdG~~ia~~~-~~~~---------~~~i~~~d~~~~~~~~l 373 (435)
T PRK05137 314 PQL------YVMNADGSNPRRISFG----GGRYSTPVWSPRGDLIAFTK-QGGG---------QFSIGVMKPDGSGERIL 373 (435)
T ss_pred CeE------EEEECCCCCeEEeecC----CCcccCeEECCCCCEEEEEE-cCCC---------ceEEEEEECCCCceEec
Confidence 233 3447777777766521 111111 2222344554443 2211 14689999877766655
Q ss_pred cc
Q 013179 283 PI 284 (448)
Q Consensus 283 ~~ 284 (448)
..
T Consensus 374 t~ 375 (435)
T PRK05137 374 TS 375 (435)
T ss_pred cC
Confidence 43
No 91
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=88.76 E-value=22 Score=33.70 Aligned_cols=222 Identities=14% Similarity=0.218 Sum_probs=99.5
Q ss_pred ECCcEEEEEcCCCCCcccCceEEEEcCCCcEEeeeecCCCCCCCCCCCCCcceeEEEE-CCeEEEEcccCCCCCCCcEEE
Q 013179 28 IGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI-DCHMFIFGGRFGSRRLGDFWV 106 (448)
Q Consensus 28 ~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~ 106 (448)
..++..++.|-. .-++.-.-.-.+|++++.. .+.|-..+....+ ++.++++|.. ..+++
T Consensus 69 f~~~~g~ivG~~------g~ll~T~DgG~tW~~v~l~--------~~lpgs~~~i~~l~~~~~~l~~~~------G~iy~ 128 (302)
T PF14870_consen 69 FDGNEGWIVGEP------GLLLHTTDGGKTWERVPLS--------SKLPGSPFGITALGDGSAELAGDR------GAIYR 128 (302)
T ss_dssp EETTEEEEEEET------TEEEEESSTTSS-EE------------TT-SS-EEEEEEEETTEEEEEETT--------EEE
T ss_pred ecCCceEEEcCC------ceEEEecCCCCCcEEeecC--------CCCCCCeeEEEEcCCCcEEEEcCC------CcEEE
Confidence 333668887742 1133333345589998642 1233334444443 5567776542 23666
Q ss_pred EECCCCcEEEeecCCCCCCcCcccEEEEECCcEEEEEecCCCCccCCceEEEeCCCCceEeecCCCCCCCccCCceeEEe
Q 013179 107 LDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMV 186 (448)
Q Consensus 107 ~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~ 186 (448)
=.-.-.+|+.+.. +..-....+....++++++++-. +.- +...|+-...|+... .+..|.-.+|...
T Consensus 129 T~DgG~tW~~~~~----~~~gs~~~~~r~~dG~~vavs~~-G~~----~~s~~~G~~~w~~~~----r~~~~riq~~gf~ 195 (302)
T PF14870_consen 129 TTDGGKTWQAVVS----ETSGSINDITRSSDGRYVAVSSR-GNF----YSSWDPGQTTWQPHN----RNSSRRIQSMGFS 195 (302)
T ss_dssp ESSTTSSEEEEE-----S----EEEEEE-TTS-EEEEETT-SSE----EEEE-TT-SS-EEEE------SSS-EEEEEE-
T ss_pred eCCCCCCeeEccc----CCcceeEeEEECCCCcEEEEECc-ccE----EEEecCCCccceEEc----cCccceehhceec
Confidence 5556678998864 11222233344567776666632 221 235677778899884 3445555566555
Q ss_pred -CCEEEEEcccCCCCCccCceeeecccccccCCCCceEEecCCCCCCCCCce-eEEEE-eCCEEEEEcCCCCCCCccccc
Q 013179 187 -EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCG-HTITS-GGHYLLLFGGHGTGGWLSRYD 263 (448)
Q Consensus 187 -~~~lyv~GG~~~~~~~~~d~~~~~~~~~yd~~~~~W~~~~~~g~~p~~r~~-~~~~~-~~~~i~v~GG~~~~~~~~~~~ 263 (448)
++.|+++. ..+. + .+++ ......+|++... +.+....+ ..++. .++.+++.||...
T Consensus 196 ~~~~lw~~~-~Gg~------~-~~s~---~~~~~~~w~~~~~--~~~~~~~~~ld~a~~~~~~~wa~gg~G~-------- 254 (302)
T PF14870_consen 196 PDGNLWMLA-RGGQ------I-QFSD---DPDDGETWSEPII--PIKTNGYGILDLAYRPPNEIWAVGGSGT-------- 254 (302)
T ss_dssp TTS-EEEEE-TTTE------E-EEEE----TTEEEEE---B---TTSS--S-EEEEEESSSS-EEEEESTT---------
T ss_pred CCCCEEEEe-CCcE------E-EEcc---CCCCccccccccC--CcccCceeeEEEEecCCCCEEEEeCCcc--------
Confidence 56777765 3221 1 1111 1234566776431 11222232 23344 4579999998542
Q ss_pred ceeCcEEEEEcCCCceEEeccCCCCCCCccceEEE-EECCEEEEEccC
Q 013179 264 IYYNDTIILDRLSAQWKRLPIGNEPPPARAYHSMT-CLGSLYLLFGGF 310 (448)
Q Consensus 264 ~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~-~~~~~i~v~GG~ 310 (448)
+++=.-..++|.+.+.....|. ....++ .-+++-+++|-.
T Consensus 255 -----l~~S~DgGktW~~~~~~~~~~~--n~~~i~f~~~~~gf~lG~~ 295 (302)
T PF14870_consen 255 -----LLVSTDGGKTWQKDRVGENVPS--NLYRIVFVNPDKGFVLGQD 295 (302)
T ss_dssp -----EEEESSTTSS-EE-GGGTTSSS-----EEEEEETTEEEEE-ST
T ss_pred -----EEEeCCCCccceECccccCCCC--ceEEEEEcCCCceEEECCC
Confidence 5555556789999877532222 223333 345799999853
No 92
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=88.34 E-value=26 Score=34.73 Aligned_cols=194 Identities=13% Similarity=0.120 Sum_probs=98.4
Q ss_pred CCeEEEEcccCCCCCCCcEEEEECCCCcEEEeecCCCCCCcCcccEEEEECCcEEEEEecCCCCcc------CCceEEEe
Q 013179 86 DCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKW------LSDVYVLD 159 (448)
Q Consensus 86 ~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~------~~~v~~yd 159 (448)
+++.++++=..++.....++++|+.+++...-. ++..+... ++=..+++.+++...+.... ...+++..
T Consensus 134 dg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~----i~~~~~~~-~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~ 208 (414)
T PF02897_consen 134 DGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG----IENPKFSS-VSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHK 208 (414)
T ss_dssp TSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE----EEEEESEE-EEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEE
T ss_pred CCCEEEEEecCCCCceEEEEEEECCCCcCcCCc----ccccccce-EEEeCCCCEEEEEEeCcccccccCCCCcEEEEEE
Confidence 667667764444455567999999999654322 23333221 33345545555555544323 66789988
Q ss_pred CCCCceE--eecCCCCCCCccC-CceeEEe-CCE-EEEEcccCCCCCccCceeeecccccccCCC-----CceEEecCCC
Q 013179 160 TISLEWM--QLPVTGSVPPPRC-GHTATMV-EKR-LLIYGGRGGGGPIMGDLWALKGLIEEENET-----PGWTQLKLPG 229 (448)
Q Consensus 160 ~~t~~W~--~~~~~~~~p~~r~-~~~~~~~-~~~-lyv~GG~~~~~~~~~d~~~~~~~~~yd~~~-----~~W~~~~~~g 229 (448)
+.+..-+ .+- ..+.... ...+..- +++ |+|.-..... .+++|.+ |... ..|..+..
T Consensus 209 ~gt~~~~d~lvf---e~~~~~~~~~~~~~s~d~~~l~i~~~~~~~---~s~v~~~------d~~~~~~~~~~~~~l~~-- 274 (414)
T PF02897_consen 209 LGTPQSEDELVF---EEPDEPFWFVSVSRSKDGRYLFISSSSGTS---ESEVYLL------DLDDGGSPDAKPKLLSP-- 274 (414)
T ss_dssp TTS-GGG-EEEE---C-TTCTTSEEEEEE-TTSSEEEEEEESSSS---EEEEEEE------ECCCTTTSS-SEEEEEE--
T ss_pred CCCChHhCeeEE---eecCCCcEEEEEEecCcccEEEEEEEcccc---CCeEEEE------eccccCCCcCCcEEEeC--
Confidence 8877654 221 1122222 1122222 333 3333332211 2455555 6655 47887752
Q ss_pred CCCCCCceeEEEEeCCEEEEEcCCCCCCCcccccceeCcEEEEEcCCCc---eEE-eccCCCCCCCccceEEEEECCEEE
Q 013179 230 QAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQ---WKR-LPIGNEPPPARAYHSMTCLGSLYL 305 (448)
Q Consensus 230 ~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~---W~~-~~~~~~~p~~r~~~~~~~~~~~i~ 305 (448)
+..-..+.+...++.+|+....+. ....+..+++.... |.. +.+.. ....--.+...+++|+
T Consensus 275 --~~~~~~~~v~~~~~~~yi~Tn~~a---------~~~~l~~~~l~~~~~~~~~~~l~~~~---~~~~l~~~~~~~~~Lv 340 (414)
T PF02897_consen 275 --REDGVEYYVDHHGDRLYILTNDDA---------PNGRLVAVDLADPSPAEWWTVLIPED---EDVSLEDVSLFKDYLV 340 (414)
T ss_dssp --SSSS-EEEEEEETTEEEEEE-TT----------TT-EEEEEETTSTSGGGEEEEEE--S---SSEEEEEEEEETTEEE
T ss_pred --CCCceEEEEEccCCEEEEeeCCCC---------CCcEEEEecccccccccceeEEcCCC---CceeEEEEEEECCEEE
Confidence 222233344456889999876332 23578889987665 664 33321 1223444556678888
Q ss_pred EEccCCC
Q 013179 306 LFGGFDG 312 (448)
Q Consensus 306 v~GG~~~ 312 (448)
+.-=.++
T Consensus 341 l~~~~~~ 347 (414)
T PF02897_consen 341 LSYRENG 347 (414)
T ss_dssp EEEEETT
T ss_pred EEEEECC
Confidence 7654433
No 93
>PRK03629 tolB translocation protein TolB; Provisional
Probab=88.05 E-value=31 Score=34.57 Aligned_cols=170 Identities=12% Similarity=0.116 Sum_probs=83.9
Q ss_pred CcEEEEECCCCcEEEeecCCCCCCcCcccEEEEECCc-EEEEEecCCCCccCCceEEEeCCCCceEeecCCCCCCCccCC
Q 013179 102 GDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCG 180 (448)
Q Consensus 102 ~~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~ 180 (448)
..++.+|+.+++-+.+.. .+..- .......|+ +|++.....+ ..++|.+|+.+.+.+++. ..+.. .
T Consensus 223 ~~i~i~dl~~G~~~~l~~---~~~~~--~~~~~SPDG~~La~~~~~~g---~~~I~~~d~~tg~~~~lt---~~~~~--~ 289 (429)
T PRK03629 223 SALVIQTLANGAVRQVAS---FPRHN--GAPAFSPDGSKLAFALSKTG---SLNLYVMDLASGQIRQVT---DGRSN--N 289 (429)
T ss_pred cEEEEEECCCCCeEEccC---CCCCc--CCeEECCCCCEEEEEEcCCC---CcEEEEEECCCCCEEEcc---CCCCC--c
Confidence 468999999888766653 22211 122223344 5555433222 235999999998888775 22111 1
Q ss_pred ceeEEe-CCEEEEEcccCCCCCccCceeeecccccccCCCCceEEecCCCCCCCCCceeEEEEeCC-EEEEEcCCCCCCC
Q 013179 181 HTATMV-EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGH-YLLLFGGHGTGGW 258 (448)
Q Consensus 181 ~~~~~~-~~~lyv~GG~~~~~~~~~d~~~~~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~~~~-~i~v~GG~~~~~~ 258 (448)
...... +++.+++...... ..++|. +|+++..-+.+...+ .........-++ .|+..+....
T Consensus 290 ~~~~wSPDG~~I~f~s~~~g---~~~Iy~------~d~~~g~~~~lt~~~----~~~~~~~~SpDG~~Ia~~~~~~g--- 353 (429)
T PRK03629 290 TEPTWFPDSQNLAYTSDQAG---RPQVYK------VNINGGAPQRITWEG----SQNQDADVSSDGKFMVMVSSNGG--- 353 (429)
T ss_pred CceEECCCCCEEEEEeCCCC---CceEEE------EECCCCCeEEeecCC----CCccCEEECCCCCEEEEEEccCC---
Confidence 112222 4444444332211 123443 477777666664221 111112222334 4444433221
Q ss_pred cccccceeCcEEEEEcCCCceEEeccCCCCCCCccceEEEEECCEEEEEccCCC
Q 013179 259 LSRYDIYYNDTIILDRLSAQWKRLPIGNEPPPARAYHSMTCLGSLYLLFGGFDG 312 (448)
Q Consensus 259 ~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~ 312 (448)
..+++++|+.+..++.+..... .......-+++.+++.+.++
T Consensus 354 -------~~~I~~~dl~~g~~~~Lt~~~~-----~~~p~~SpDG~~i~~~s~~~ 395 (429)
T PRK03629 354 -------QQHIAKQDLATGGVQVLTDTFL-----DETPSIAPNGTMVIYSSSQG 395 (429)
T ss_pred -------CceEEEEECCCCCeEEeCCCCC-----CCCceECCCCCEEEEEEcCC
Confidence 1469999999999888764211 11112233566666665543
No 94
>PRK04043 tolB translocation protein TolB; Provisional
Probab=87.93 E-value=31 Score=34.46 Aligned_cols=152 Identities=13% Similarity=0.199 Sum_probs=81.9
Q ss_pred CcEEEEECCCCcEEEeecCCCCCCcCcccEEEEECCc-EEEEEecCCCCccCCceEEEeCCCCceEeecCCCCCCCccCC
Q 013179 102 GDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCG 180 (448)
Q Consensus 102 ~~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~ 180 (448)
.++|++|+.+++=+++.. .+ ... .......|+ +|++.-...+ -.++|.+|+.+..++++. ..+. ..
T Consensus 213 ~~Iyv~dl~tg~~~~lt~---~~-g~~-~~~~~SPDG~~la~~~~~~g---~~~Iy~~dl~~g~~~~LT---~~~~--~d 279 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIAS---SQ-GML-VVSDVSKDGSKLLLTMAPKG---QPDIYLYDTNTKTLTQIT---NYPG--ID 279 (419)
T ss_pred CEEEEEECCCCcEEEEec---CC-CcE-EeeEECCCCCEEEEEEccCC---CcEEEEEECCCCcEEEcc---cCCC--cc
Confidence 379999999888777763 11 111 111122333 5555443322 357999999999999886 2222 11
Q ss_pred ceeEEe--CCEEEEEcccCCCCCccCceeeecccccccCCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCCCCCCC
Q 013179 181 HTATMV--EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGW 258 (448)
Q Consensus 181 ~~~~~~--~~~lyv~GG~~~~~~~~~d~~~~~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~~~~~i~v~GG~~~~~~ 258 (448)
...... +.+|+..-...+ ..++| .+|+++...+++...+. ........++.|..........
T Consensus 280 ~~p~~SPDG~~I~F~Sdr~g----~~~Iy------~~dl~~g~~~rlt~~g~-----~~~~~SPDG~~Ia~~~~~~~~~- 343 (419)
T PRK04043 280 VNGNFVEDDKRIVFVSDRLG----YPNIF------MKKLNSGSVEQVVFHGK-----NNSSVSTYKNYIVYSSRETNNE- 343 (419)
T ss_pred CccEECCCCCEEEEEECCCC----CceEE------EEECCCCCeEeCccCCC-----cCceECCCCCEEEEEEcCCCcc-
Confidence 112222 346666554322 12344 44888888877763322 1122222344454443322110
Q ss_pred cccccceeCcEEEEEcCCCceEEeccC
Q 013179 259 LSRYDIYYNDTIILDRLSAQWKRLPIG 285 (448)
Q Consensus 259 ~~~~~~~~~~v~~yd~~~~~W~~~~~~ 285 (448)
......+++++|+.+..++.+...
T Consensus 344 ---~~~~~~~I~v~d~~~g~~~~LT~~ 367 (419)
T PRK04043 344 ---FGKNTFNLYLISTNSDYIRRLTAN 367 (419)
T ss_pred ---cCCCCcEEEEEECCCCCeEECCCC
Confidence 001125899999999999888664
No 95
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=87.47 E-value=22 Score=32.28 Aligned_cols=164 Identities=12% Similarity=0.065 Sum_probs=85.6
Q ss_pred CCcEEEEEcCCCCCcccCceEEEEcCCCcEEeeeecCCCCCCCCCCCCCcceeEEEECCeEEEEcccCC-CCCC--CcEE
Q 013179 29 GKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFG-SRRL--GDFW 105 (448)
Q Consensus 29 ~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~lyv~GG~~~-~~~~--~~~~ 105 (448)
.++.+|+.... .+..+|+.+++++.+..... ...+..|.+-.++.-++.||+---... .... ..++
T Consensus 50 ~~g~l~v~~~~-------~~~~~d~~~g~~~~~~~~~~----~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~ 118 (246)
T PF08450_consen 50 PDGRLYVADSG-------GIAVVDPDTGKVTVLADLPD----GGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVY 118 (246)
T ss_dssp TTSEEEEEETT-------CEEEEETTTTEEEEEEEEET----TCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEE
T ss_pred cCCEEEEEEcC-------ceEEEecCCCcEEEEeeccC----CCcccCCCceEEEcCCCCEEEEecCCCccccccccceE
Confidence 45777776652 35667999999988875421 011334444455555778877632221 1111 5699
Q ss_pred EEECCCCcEEEeecCCCCCCcCcccEEEEECCc-EEEEEecCCCCccCCceEEEeCCCCc--eEeecCCCCCCCcc-CCc
Q 013179 106 VLDTDIWQWSELTSFGDLPSPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTISLE--WMQLPVTGSVPPPR-CGH 181 (448)
Q Consensus 106 ~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~p~~r-~~~ 181 (448)
++++. ++...+.. .+. .-...+...++ .+|+.- .....+++|++.... +.........+... .--
T Consensus 119 ~~~~~-~~~~~~~~--~~~---~pNGi~~s~dg~~lyv~d-----s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pD 187 (246)
T PF08450_consen 119 RIDPD-GKVTVVAD--GLG---FPNGIAFSPDGKTLYVAD-----SFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPD 187 (246)
T ss_dssp EEETT-SEEEEEEE--EES---SEEEEEEETTSSEEEEEE-----TTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEE
T ss_pred EECCC-CeEEEEec--Ccc---cccceEECCcchheeecc-----cccceeEEEeccccccceeeeeeEEEcCCCCcCCC
Confidence 99999 77666653 121 12344444444 577642 234558999886433 33221100122221 112
Q ss_pred eeEEe-CCEEEEEcccCCCCCccCceeeecccccccCCCCceEEec
Q 013179 182 TATMV-EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLK 226 (448)
Q Consensus 182 ~~~~~-~~~lyv~GG~~~~~~~~~d~~~~~~~~~yd~~~~~W~~~~ 226 (448)
.+++. ++.||+..-.. ..+.+||++...-..+.
T Consensus 188 G~~vD~~G~l~va~~~~------------~~I~~~~p~G~~~~~i~ 221 (246)
T PF08450_consen 188 GLAVDSDGNLWVADWGG------------GRIVVFDPDGKLLREIE 221 (246)
T ss_dssp EEEEBTTS-EEEEEETT------------TEEEEEETTSCEEEEEE
T ss_pred cceEcCCCCEEEEEcCC------------CEEEEECCCccEEEEEc
Confidence 23333 67888863211 34566798866666676
No 96
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=85.27 E-value=7.8 Score=31.41 Aligned_cols=84 Identities=15% Similarity=0.138 Sum_probs=55.5
Q ss_pred EeCCEEEEEcCCCCCCCcccccceeCcEEEEEcCCCceEEeccCCCCCCCccceEEEEECCEEEEEccCCCCC-ccCceE
Q 013179 242 SGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPIGNEPPPARAYHSMTCLGSLYLLFGGFDGKS-TFGDIW 320 (448)
Q Consensus 242 ~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~-~~~d~w 320 (448)
.++|.+|-..-.. ....+-+..||+.+.+|+.++.+...........++.++++|-++.-..... ..-++|
T Consensus 3 cinGvly~~a~~~--------~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iW 74 (129)
T PF08268_consen 3 CINGVLYWLAWSE--------DSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIW 74 (129)
T ss_pred EECcEEEeEEEEC--------CCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEE
Confidence 3456666554431 1234679999999999998877422344566777888899998876554332 345889
Q ss_pred EecCCCCcccCceecC
Q 013179 321 WLVPEEDPIAKRYTES 336 (448)
Q Consensus 321 ~~~~~yd~~~~~w~~~ 336 (448)
.|. |..+++|+..
T Consensus 75 vLe---D~~k~~Wsk~ 87 (129)
T PF08268_consen 75 VLE---DYEKQEWSKK 87 (129)
T ss_pred Eee---ccccceEEEE
Confidence 887 3335888855
No 97
>PRK03629 tolB translocation protein TolB; Provisional
Probab=84.55 E-value=46 Score=33.28 Aligned_cols=190 Identities=12% Similarity=0.059 Sum_probs=91.9
Q ss_pred CceEEEEcCCCcEEeeeecCCCCCCCCCCCCCcceeEEEEC-CeEEEEcccCCCCCCCcEEEEECCCCcEEEeecCCCCC
Q 013179 46 SDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAID-CHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLP 124 (448)
Q Consensus 46 ~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~-~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~p 124 (448)
..++.+|+.+++-+.+.... .. .......-+ .+|++.....+ ..++|.+|+.+++.+++.. .+
T Consensus 223 ~~i~i~dl~~G~~~~l~~~~---------~~-~~~~~~SPDG~~La~~~~~~g---~~~I~~~d~~tg~~~~lt~---~~ 286 (429)
T PRK03629 223 SALVIQTLANGAVRQVASFP---------RH-NGAPAFSPDGSKLAFALSKTG---SLNLYVMDLASGQIRQVTD---GR 286 (429)
T ss_pred cEEEEEECCCCCeEEccCCC---------CC-cCCeEECCCCCEEEEEEcCCC---CcEEEEEECCCCCEEEccC---CC
Confidence 46888998888765554221 10 111222223 45555433222 2359999999998887753 11
Q ss_pred CcCcccEEEEECCcEEEEEecCCCCccCCceEEEeCCCCceEeecCCCCCCCccCCceeEEeCCEEEEEcccCCCCCccC
Q 013179 125 SPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMG 204 (448)
Q Consensus 125 ~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~ 204 (448)
. .........+++.+++...... ...+|.+|+.+.+-+++...+ .........-+++.+++.+.....
T Consensus 287 ~--~~~~~~wSPDG~~I~f~s~~~g--~~~Iy~~d~~~g~~~~lt~~~----~~~~~~~~SpDG~~Ia~~~~~~g~---- 354 (429)
T PRK03629 287 S--NNTEPTWFPDSQNLAYTSDQAG--RPQVYKVNINGGAPQRITWEG----SQNQDADVSSDGKFMVMVSSNGGQ---- 354 (429)
T ss_pred C--CcCceEECCCCCEEEEEeCCCC--CceEEEEECCCCCeEEeecCC----CCccCEEECCCCCEEEEEEccCCC----
Confidence 1 1122222344443333322111 247899999888777764211 111111112244444443332211
Q ss_pred ceeeecccccccCCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCCCCCCCcccccceeCcEEEEEcCCCceEEe
Q 013179 205 DLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRL 282 (448)
Q Consensus 205 d~~~~~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 282 (448)
..+..+|+++..++.+.... . -...+ ..-+++.+++.+.... ...+++.+.+...=..+
T Consensus 355 -----~~I~~~dl~~g~~~~Lt~~~---~-~~~p~-~SpDG~~i~~~s~~~~---------~~~l~~~~~~G~~~~~l 413 (429)
T PRK03629 355 -----QHIAKQDLATGGVQVLTDTF---L-DETPS-IAPNGTMVIYSSSQGM---------GSVLNLVSTDGRFKARL 413 (429)
T ss_pred -----ceEEEEECCCCCeEEeCCCC---C-CCCce-ECCCCCEEEEEEcCCC---------ceEEEEEECCCCCeEEC
Confidence 12344588888888776211 0 11112 2245566666554321 13466667655443444
No 98
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=84.07 E-value=35 Score=31.42 Aligned_cols=106 Identities=16% Similarity=0.108 Sum_probs=53.8
Q ss_pred cEEEEEcCCCCCcccCceEEEEcCCCcEEeeeecCCCCCCCCCCCCCcceeEEEE-CCeEEEEcccCCCCCCCcEEEEEC
Q 013179 31 SKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI-DCHMFIFGGRFGSRRLGDFWVLDT 109 (448)
Q Consensus 31 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~ 109 (448)
..+|+.++.+ +.+..||+.+++....-.. .+.++ ..++.- ++.+|+.++.. ..+..+|+
T Consensus 43 ~~l~~~~~~~-----~~v~~~d~~~~~~~~~~~~--------~~~~~--~~~~~~~g~~l~~~~~~~-----~~l~~~d~ 102 (300)
T TIGR03866 43 KLLYVCASDS-----DTIQVIDLATGEVIGTLPS--------GPDPE--LFALHPNGKILYIANEDD-----NLVTVIDI 102 (300)
T ss_pred CEEEEEECCC-----CeEEEEECCCCcEEEeccC--------CCCcc--EEEECCCCCEEEEEcCCC-----CeEEEEEC
Confidence 3466666532 4588899998765432110 11111 222222 34566665432 35889999
Q ss_pred CCCcEEEeecCCCCCCcCcccEEEEECCcEEEEEecCCCCccCCceEEEeCCCCce
Q 013179 110 DIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEW 165 (448)
Q Consensus 110 ~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W 165 (448)
.+.+-... .+.....+.++...++.+++++..+. +.+..||..+.+-
T Consensus 103 ~~~~~~~~-----~~~~~~~~~~~~~~dg~~l~~~~~~~----~~~~~~d~~~~~~ 149 (300)
T TIGR03866 103 ETRKVLAE-----IPVGVEPEGMAVSPDGKIVVNTSETT----NMAHFIDTKTYEI 149 (300)
T ss_pred CCCeEEeE-----eeCCCCcceEEECCCCCEEEEEecCC----CeEEEEeCCCCeE
Confidence 87643221 12122223344445666777665332 2356678766543
No 99
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=83.74 E-value=49 Score=32.93 Aligned_cols=208 Identities=16% Similarity=0.196 Sum_probs=100.7
Q ss_pred ccCceEEEEcCCCcEEeeeecCCCCCCCCCCCCCcceeEEEECCeEEEEccc--CCCCCCCcEEEEECCCCcEEEeecCC
Q 013179 44 FLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGR--FGSRRLGDFWVLDTDIWQWSELTSFG 121 (448)
Q Consensus 44 ~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~lyv~GG~--~~~~~~~~~~~~d~~t~~W~~~~~~~ 121 (448)
..+|+|.|++.+++=.++...-. ....||+.. +++=.+|... .......|+++++.+.++-++++-.|
T Consensus 57 ~~DdlWe~slk~g~~~ritS~lG-----Vvnn~kf~p-----dGrkvaf~rv~~~ss~~taDly~v~~e~Ge~kRiTyfG 126 (668)
T COG4946 57 CCDDLWEYSLKDGKPLRITSGLG-----VVNNPKFSP-----DGRKVAFSRVMLGSSLQTADLYVVPSEDGEAKRITYFG 126 (668)
T ss_pred echHHHHhhhccCCeeEEecccc-----eeccccCCC-----CCcEEEEEEEEecCCCccccEEEEeCCCCcEEEEEEec
Confidence 35678888888876555542211 112222221 2222222111 11234568999999999999988643
Q ss_pred CCCCcCcccEEEEECCcEEEEEecCCC-CccCCceEEEeCCCCceEeecCCCCCCCccCCce-eEEeCCEEEEEcccCCC
Q 013179 122 DLPSPRDFAAASAIGNRKIVMYGGWDG-KKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHT-ATMVEKRLLIYGGRGGG 199 (448)
Q Consensus 122 ~~p~~r~~~~~~~~~~~~iyv~GG~~~-~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~-~~~~~~~lyv~GG~~~~ 199 (448)
.|+.-.+--..++.|.|..-... ......+|..+.+..+.+.+. .+.+ ..++.+-+.++|-...+
T Consensus 127 ----r~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~e~Ln---------lGpathiv~~dg~ivigRntyd 193 (668)
T COG4946 127 ----RRFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKTEPLN---------LGPATHIVIKDGIIVIGRNTYD 193 (668)
T ss_pred ----cccceeeccCCCCCEEEEeccCCCcccceeeeEEccCCceeeecc---------CCceeeEEEeCCEEEEccCccc
Confidence 22222222245677887754321 112334555555555455443 1222 22334446666643221
Q ss_pred --------CCccCceeeecccccccCCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCCCCCCCcccc---------
Q 013179 200 --------GPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRY--------- 262 (448)
Q Consensus 200 --------~~~~~d~~~~~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~--------- 262 (448)
+..-..+|.- .....+++++- +++.... +-+++++++|.+.-+.+-+++...
T Consensus 194 LP~WK~YkGGtrGklWis------~d~g~tFeK~v---dl~~~vS--~PmIV~~RvYFlsD~eG~GnlYSvdldGkDlrr 262 (668)
T COG4946 194 LPHWKGYKGGTRGKLWIS------SDGGKTFEKFV---DLDGNVS--SPMIVGERVYFLSDHEGVGNLYSVDLDGKDLRR 262 (668)
T ss_pred CcccccccCCccceEEEE------ecCCcceeeee---ecCCCcC--CceEEcceEEEEecccCccceEEeccCCchhhh
Confidence 1122334433 22233444443 2222211 334567777776543322211100
Q ss_pred --------------------cceeCcEEEEEcCCCceEEeccC
Q 013179 263 --------------------DIYYNDTIILDRLSAQWKRLPIG 285 (448)
Q Consensus 263 --------------------~~~~~~v~~yd~~~~~W~~~~~~ 285 (448)
...-.|+|.|||++..-+++...
T Consensus 263 HTnFtdYY~R~~nsDGkrIvFq~~GdIylydP~td~lekldI~ 305 (668)
T COG4946 263 HTNFTDYYPRNANSDGKRIVFQNAGDIYLYDPETDSLEKLDIG 305 (668)
T ss_pred cCCchhccccccCCCCcEEEEecCCcEEEeCCCcCcceeeecC
Confidence 01224799999999999988764
No 100
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=83.73 E-value=28 Score=34.02 Aligned_cols=245 Identities=11% Similarity=0.027 Sum_probs=108.6
Q ss_pred CCcEEEEECCcEEEEEcCCCCCcccCceEEEEcCCCcEEeeeecCCCCCCCCCCCCCcceeEEEECCeE-EEEcccCCCC
Q 013179 21 SGHSAVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHM-FIFGGRFGSR 99 (448)
Q Consensus 21 ~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~l-yv~GG~~~~~ 99 (448)
+.+.-+...+++-++|.|-.+ ....++..|+.+++-.+++.-. .....+...+.-+..+ |+-.+
T Consensus 37 YF~~~~ft~dG~kllF~s~~d--g~~nly~lDL~t~~i~QLTdg~--------g~~~~g~~~s~~~~~~~Yv~~~----- 101 (386)
T PF14583_consen 37 YFYQNCFTDDGRKLLFASDFD--GNRNLYLLDLATGEITQLTDGP--------GDNTFGGFLSPDDRALYYVKNG----- 101 (386)
T ss_dssp -TTS--B-TTS-EEEEEE-TT--SS-EEEEEETTT-EEEE---SS---------B-TTT-EE-TTSSEEEEEETT-----
T ss_pred eecCCCcCCCCCEEEEEeccC--CCcceEEEEcccCEEEECccCC--------CCCccceEEecCCCeEEEEECC-----
Confidence 445556666677777766422 2356899999999998887421 1223333333334555 44444
Q ss_pred CCCcEEEEECCCCcEEEeecCCCCCCcCcccEEEEE-CCcEEEEEecCC------------------CCccCCceEEEeC
Q 013179 100 RLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAI-GNRKIVMYGGWD------------------GKKWLSDVYVLDT 160 (448)
Q Consensus 100 ~~~~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~------------------~~~~~~~v~~yd~ 160 (448)
..++..|+.|.+=+.+-. .|..-.+....++ .++.. ++|=.. .......+...|+
T Consensus 102 --~~l~~vdL~T~e~~~vy~---~p~~~~g~gt~v~n~d~t~-~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl 175 (386)
T PF14583_consen 102 --RSLRRVDLDTLEERVVYE---VPDDWKGYGTWVANSDCTK-LVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDL 175 (386)
T ss_dssp --TEEEEEETTT--EEEEEE-----TTEEEEEEEEE-TTSSE-EEEEEEEGGG-----SHHHHHHHHHC---EEEEEEET
T ss_pred --CeEEEEECCcCcEEEEEE---CCcccccccceeeCCCccE-EEEEEEeehhccCccccHHHHHHHhhCCCceEEEEEC
Confidence 358999999988767664 5655544444443 23222 222110 0123456888899
Q ss_pred CCCceEeecCCCCCCCccCCceeEEe-CCEEEEEcccCCCCCccCceeeecccccccCCCCceEEecCCCCCCCCCceeE
Q 013179 161 ISLEWMQLPVTGSVPPPRCGHTATMV-EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHT 239 (448)
Q Consensus 161 ~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~d~~~~~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~ 239 (448)
.+++.+.+-.. ..-.+|--..- +..+++|-=.+.-..+-.-+|.+ |.+......+.. ..+....+|-
T Consensus 176 ~tG~~~~v~~~----~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i------~~dg~~~~~v~~--~~~~e~~gHE 243 (386)
T PF14583_consen 176 KTGERKVVFED----TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTI------NTDGSNVKKVHR--RMEGESVGHE 243 (386)
T ss_dssp TT--EEEEEEE----SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEE------ETTS---EESS-----TTEEEEEE
T ss_pred CCCceeEEEec----CccccCcccCCCCCCEEEEeccCCcceeceEEEEE------EcCCCcceeeec--CCCCcccccc
Confidence 88888776311 11123333222 34555553222222222245655 555555555542 3345556665
Q ss_pred EEEeCC-EEEEEcCCCCCCCcccccceeCcEEEEEcCCCceEEeccCCCCCCCccceEEEEECCEEEEEccCC
Q 013179 240 ITSGGH-YLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPIGNEPPPARAYHSMTCLGSLYLLFGGFD 311 (448)
Q Consensus 240 ~~~~~~-~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~ 311 (448)
.-+.++ .|+..+.... + ...-+..||+.+..=+.+..+ ++..|-.+..++++++--|.+
T Consensus 244 fw~~DG~~i~y~~~~~~-~-------~~~~i~~~d~~t~~~~~~~~~-----p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 244 FWVPDGSTIWYDSYTPG-G-------QDFWIAGYDPDTGERRRLMEM-----PWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp EE-TTSS-EEEEEEETT-T---------EEEEEE-TTT--EEEEEEE------SEEEEEE-TTSSEEEEEE--
T ss_pred cccCCCCEEEEEeecCC-C-------CceEEEeeCCCCCCceEEEeC-----CceeeeEEcCCCCEEEecCCC
Confidence 555554 4433333222 1 112377788887754444443 346677777788888876654
No 101
>PRK04043 tolB translocation protein TolB; Provisional
Probab=83.23 E-value=52 Score=32.84 Aligned_cols=194 Identities=12% Similarity=0.106 Sum_probs=100.5
Q ss_pred CceEEEEcCCCcEEeeeecCCCCCCCCCCCCCcceeEEEE-CCeEEEEcccCCCCCCCcEEEEECCCCcEEEeecCCCCC
Q 013179 46 SDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI-DCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLP 124 (448)
Q Consensus 46 ~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~p 124 (448)
.++|.+|+.+++=+.+.... .........- +.+|++.-...+ ..++|.+|..++.++++.. .+
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~----------g~~~~~~~SPDG~~la~~~~~~g---~~~Iy~~dl~~g~~~~LT~---~~ 276 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQ----------GMLVVSDVSKDGSKLLLTMAPKG---QPDIYLYDTNTKTLTQITN---YP 276 (419)
T ss_pred CEEEEEECCCCcEEEEecCC----------CcEEeeEECCCCCEEEEEEccCC---CcEEEEEECCCCcEEEccc---CC
Confidence 48999999998766665221 1111122332 345554433222 3579999999999998864 22
Q ss_pred CcCcccEEEEECCc-EEEEEecCCCCccCCceEEEeCCCCceEeecCCCCCCCccCCceeEEeCCEEEEEcccCCCCCcc
Q 013179 125 SPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIM 203 (448)
Q Consensus 125 ~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~ 203 (448)
. .........|+ +||+.-...+ ..++|.+|+.+++.+++...+. ... ...-+++.+++-.........
T Consensus 277 ~--~d~~p~~SPDG~~I~F~Sdr~g---~~~Iy~~dl~~g~~~rlt~~g~-----~~~-~~SPDG~~Ia~~~~~~~~~~~ 345 (419)
T PRK04043 277 G--IDVNGNFVEDDKRIVFVSDRLG---YPNIFMKKLNSGSVEQVVFHGK-----NNS-SVSTYKNYIVYSSRETNNEFG 345 (419)
T ss_pred C--ccCccEECCCCCEEEEEECCCC---CceEEEEECCCCCeEeCccCCC-----cCc-eECCCCCEEEEEEcCCCcccC
Confidence 1 11222222333 6776654322 3579999999999988763221 222 222244433333332211100
Q ss_pred CceeeecccccccCCCCceEEecCCCCCCCCCce-eEEEEeCCEEEEEcCCCCCCCcccccceeCcEEEEEcCCCceEEe
Q 013179 204 GDLWALKGLIEEENETPGWTQLKLPGQAPSSRCG-HTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRL 282 (448)
Q Consensus 204 ~d~~~~~~~~~yd~~~~~W~~~~~~g~~p~~r~~-~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 282 (448)
.. ...+..+|+++..++.+...+ ... .+....+..|+..... .. ...++++++..+.=..+
T Consensus 346 ~~---~~~I~v~d~~~g~~~~LT~~~-----~~~~p~~SPDG~~I~f~~~~-~~---------~~~L~~~~l~g~~~~~l 407 (419)
T PRK04043 346 KN---TFNLYLISTNSDYIRRLTANG-----VNQFPRFSSDGGSIMFIKYL-GN---------QSALGIIRLNYNKSFLF 407 (419)
T ss_pred CC---CcEEEEEECCCCCeEECCCCC-----CcCCeEECCCCCEEEEEEcc-CC---------cEEEEEEecCCCeeEEe
Confidence 00 023344488889888887421 111 2222233444444322 21 24688888877654445
Q ss_pred cc
Q 013179 283 PI 284 (448)
Q Consensus 283 ~~ 284 (448)
+.
T Consensus 408 ~~ 409 (419)
T PRK04043 408 PL 409 (419)
T ss_pred ec
Confidence 43
No 102
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=83.19 E-value=29 Score=33.11 Aligned_cols=125 Identities=11% Similarity=0.038 Sum_probs=68.9
Q ss_pred CceEEEeCCCC-----ceEeecCCCCCCCccCCceeEEeCCEEEEEcccCCCCCccCceeeecccccccCCCCc-eEEec
Q 013179 153 SDVYVLDTISL-----EWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPG-WTQLK 226 (448)
Q Consensus 153 ~~v~~yd~~t~-----~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~~~~~~~yd~~~~~-W~~~~ 226 (448)
..++.|+.... +.+.+. ....+-.-.+++.+++++.+.-|. .+..|++...+ +....
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~---~~~~~g~V~ai~~~~~~lv~~~g~--------------~l~v~~l~~~~~l~~~~ 124 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIH---STEVKGPVTAICSFNGRLVVAVGN--------------KLYVYDLDNSKTLLKKA 124 (321)
T ss_dssp EEEEEEEECSS-----EEEEEE---EEEESS-EEEEEEETTEEEEEETT--------------EEEEEEEETTSSEEEEE
T ss_pred cEEEEEEEEcccccceEEEEEE---EEeecCcceEhhhhCCEEEEeecC--------------EEEEEEccCcccchhhh
Confidence 55888988885 566554 222222235666678886665552 23455666666 76665
Q ss_pred CCCCCCCCCceeEEEEeCCEEEEEcCCCCCCCcccccceeCcEEEEEcCCCceEEeccCCCCCCCccceEEEEE-CCEEE
Q 013179 227 LPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPIGNEPPPARAYHSMTCL-GSLYL 305 (448)
Q Consensus 227 ~~g~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~i~ 305 (448)
....+-...++.+.++.|++---+.+ -.++.|+.+..+-..+.... .++...++..+ ++..+
T Consensus 125 ---~~~~~~~i~sl~~~~~~I~vgD~~~s-----------v~~~~~~~~~~~l~~va~d~---~~~~v~~~~~l~d~~~~ 187 (321)
T PF03178_consen 125 ---FYDSPFYITSLSVFKNYILVGDAMKS-----------VSLLRYDEENNKLILVARDY---QPRWVTAAEFLVDEDTI 187 (321)
T ss_dssp ---EE-BSSSEEEEEEETTEEEEEESSSS-----------EEEEEEETTTE-EEEEEEES---S-BEEEEEEEE-SSSEE
T ss_pred ---eecceEEEEEEeccccEEEEEEcccC-----------EEEEEEEccCCEEEEEEecC---CCccEEEEEEecCCcEE
Confidence 23333355566677886665322211 23556677666677776643 36766666666 55555
Q ss_pred EEccCC
Q 013179 306 LFGGFD 311 (448)
Q Consensus 306 v~GG~~ 311 (448)
+.+-..
T Consensus 188 i~~D~~ 193 (321)
T PF03178_consen 188 IVGDKD 193 (321)
T ss_dssp EEEETT
T ss_pred EEEcCC
Confidence 555433
No 103
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=82.42 E-value=55 Score=32.52 Aligned_cols=114 Identities=22% Similarity=0.178 Sum_probs=58.6
Q ss_pred cEEEEECCcEEEEEcCCCCCcccCceEEEEcCCCcE-EeeeecCCCCCCCCCCCCCcceeEEEECCeEEEEcccCCCCCC
Q 013179 23 HSAVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLW-FQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRL 101 (448)
Q Consensus 23 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W-~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~lyv~GG~~~~~~~ 101 (448)
+++.+-.+|+++..|+.. ..+-+||..+..- +.+-. ...|..+.. .+..++.+++.|+-+.
T Consensus 72 ~s~~fR~DG~LlaaGD~s-----G~V~vfD~k~r~iLR~~~a-------h~apv~~~~--f~~~d~t~l~s~sDd~---- 133 (487)
T KOG0310|consen 72 YSVDFRSDGRLLAAGDES-----GHVKVFDMKSRVILRQLYA-------HQAPVHVTK--FSPQDNTMLVSGSDDK---- 133 (487)
T ss_pred eEEEeecCCeEEEccCCc-----CcEEEeccccHHHHHHHhh-------ccCceeEEE--ecccCCeEEEecCCCc----
Confidence 445555678888888853 3488899555211 11110 011221111 1235788899987442
Q ss_pred CcEEEEECCCCcEEEeecCCCCCCcCcccEEEEECCcEEEEEecCCCCccCCceEEEeCCCC
Q 013179 102 GDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISL 163 (448)
Q Consensus 102 ~~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~ 163 (448)
-+-.+|..+.. .++...+.--.-| ..++.-.++.|++-||+++. +-.||..+.
T Consensus 134 -v~k~~d~s~a~-v~~~l~~htDYVR--~g~~~~~~~hivvtGsYDg~-----vrl~DtR~~ 186 (487)
T KOG0310|consen 134 -VVKYWDLSTAY-VQAELSGHTDYVR--CGDISPANDHIVVTGSYDGK-----VRLWDTRSL 186 (487)
T ss_pred -eEEEEEcCCcE-EEEEecCCcceeE--eeccccCCCeEEEecCCCce-----EEEEEeccC
Confidence 23344555544 2333211111122 22223245589999999875 556777666
No 104
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=81.28 E-value=44 Score=30.68 Aligned_cols=142 Identities=12% Similarity=0.043 Sum_probs=74.3
Q ss_pred ccCceEEEEcCCCcEE---eeeecCCCCCCCCCCCCCcc---eeEEEECCeEEEEcccCCCCCCCcEEEEECCCCcEEEe
Q 013179 44 FLSDVVVYDIDNKLWF---QPECTGNGSNGQVGPGPRAF---HIAVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSEL 117 (448)
Q Consensus 44 ~~~~~~~yd~~~~~W~---~~~~~~~~~~~~~~p~~R~~---h~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~ 117 (448)
..+.+..||+.+++-. .++...- ....|-...+ .-.++..+-|+|+=........-.+-+.|+.+..-.+.
T Consensus 87 ~s~~IvkydL~t~~v~~~~~L~~A~~---~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~ivvskld~~tL~v~~t 163 (250)
T PF02191_consen 87 NSRNIVKYDLTTRSVVARRELPGAGY---NNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNIVVSKLDPETLSVEQT 163 (250)
T ss_pred CCceEEEEECcCCcEEEEEECCcccc---ccccceecCCCceEEEEEcCCCEEEEEecCCCCCcEEEEeeCcccCceEEE
Confidence 4678999999998754 3322110 0001111111 22344455676664433222112245566665432221
Q ss_pred ecCCCCCCcCcccEEEEECCcEEEEEecCCCCccCCceEEEeCCCCceEeecCCCCCCCccCCceeEEe---CCEEEEEc
Q 013179 118 TSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMV---EKRLLIYG 194 (448)
Q Consensus 118 ~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~---~~~lyv~G 194 (448)
=.+ ..+......+-.++ |.||++-..+... ..=.+.||+.+++=+.+. -+.+.+-..+++... +.+||++-
T Consensus 164 w~T-~~~k~~~~naFmvC--GvLY~~~s~~~~~-~~I~yafDt~t~~~~~~~--i~f~~~~~~~~~l~YNP~dk~LY~wd 237 (250)
T PF02191_consen 164 WNT-SYPKRSAGNAFMVC--GVLYATDSYDTRD-TEIFYAFDTYTGKEEDVS--IPFPNPYGNISMLSYNPRDKKLYAWD 237 (250)
T ss_pred EEe-ccCchhhcceeeEe--eEEEEEEECCCCC-cEEEEEEECCCCceecee--eeeccccCceEeeeECCCCCeEEEEE
Confidence 110 25566666655555 3899997765443 233688999988766543 123333345555555 56899875
No 105
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=81.03 E-value=49 Score=31.00 Aligned_cols=159 Identities=17% Similarity=0.160 Sum_probs=82.1
Q ss_pred CCCCCcc---eeEE-EECCeEEEEcccCC-----------------CCCCCcEEEEECCCCcEEEeecCCCCCCcC--cc
Q 013179 73 GPGPRAF---HIAV-AIDCHMFIFGGRFG-----------------SRRLGDFWVLDTDIWQWSELTSFGDLPSPR--DF 129 (448)
Q Consensus 73 ~p~~R~~---h~~~-~~~~~lyv~GG~~~-----------------~~~~~~~~~~d~~t~~W~~~~~~~~~p~~r--~~ 129 (448)
.|.||++ |.++ .+++.| .|||+-. ..-.+.++.||.++++-+.+=.. +...++ .+
T Consensus 29 G~~P~SGGDTYNAV~~vDd~I-yFGGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~VrLLWke-sih~~~~WaG 106 (339)
T PF09910_consen 29 GPPPTSGGDTYNAVEWVDDFI-YFGGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDSVRLLWKE-SIHDKTKWAG 106 (339)
T ss_pred cCCCCCCCccceeeeeecceE-EEeeeecCCceeeeccCCceEEEEeeccceEEEEEcCCCeEEEEEec-ccCCcccccc
Confidence 3556654 4444 455555 5777621 11246699999998874443210 122221 11
Q ss_pred cEEEEE---CCcEEEEEecCCCCccCCceEEEeCCCCceEeecCCCCCCCccCCceeEEeCCEEEEEcccCCCCCccCce
Q 013179 130 AAASAI---GNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDL 206 (448)
Q Consensus 130 ~~~~~~---~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~ 206 (448)
=-+-.+ -+.+|++.-+ ++.. --.+|..|..++.-+++. .-|.++ .+..++..+|-+ .....
T Consensus 107 EVSdIlYdP~~D~LLlAR~-DGh~-nLGvy~ldr~~g~~~~L~---~~ps~K---G~~~~D~a~F~i--~~~~~------ 170 (339)
T PF09910_consen 107 EVSDILYDPYEDRLLLARA-DGHA-NLGVYSLDRRTGKAEKLS---SNPSLK---GTLVHDYACFGI--NNFHK------ 170 (339)
T ss_pred chhheeeCCCcCEEEEEec-CCcc-eeeeEEEcccCCceeecc---CCCCcC---ceEeeeeEEEec--ccccc------
Confidence 111111 1236666532 2222 235999999999999887 444442 233444444433 11111
Q ss_pred eeecccccccCCCCce--EEecCC----CCCCCCCceeEEEEeCCEEEEE
Q 013179 207 WALKGLIEEENETPGW--TQLKLP----GQAPSSRCGHTITSGGHYLLLF 250 (448)
Q Consensus 207 ~~~~~~~~yd~~~~~W--~~~~~~----g~~p~~r~~~~~~~~~~~i~v~ 250 (448)
-++.+++||+.+++| +..+.. |.....|..-.++...+++|.|
T Consensus 171 -g~~~i~~~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF 219 (339)
T PF09910_consen 171 -GVSGIHCLDLISGKWVIESFDVSLSVDGGPVIRPELGAMASAYNRLFAF 219 (339)
T ss_pred -CCceEEEEEccCCeEEEEecccccCCCCCceEeeccccEEEEeeeEEEE
Confidence 246778889999999 444322 1122223333455566677766
No 106
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=80.46 E-value=49 Score=30.67 Aligned_cols=190 Identities=16% Similarity=0.051 Sum_probs=105.0
Q ss_pred cEEEEECCCCcEEEeecCCCCCCcCcccEEEEECCcEEEEEecCCCCccCCceEEEeCCCCceEeecCCCCCCCccCCce
Q 013179 103 DFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHT 182 (448)
Q Consensus 103 ~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~ 182 (448)
.+=.+||.|++-.+.+ ++.+-.-|..++-.++..+|.-+ -+.+-++|+++..-++.+....++..-.. +
T Consensus 84 aiGhLdP~tGev~~yp----Lg~Ga~Phgiv~gpdg~~Witd~------~~aI~R~dpkt~evt~f~lp~~~a~~nle-t 152 (353)
T COG4257 84 AIGHLDPATGEVETYP----LGSGASPHGIVVGPDGSAWITDT------GLAIGRLDPKTLEVTRFPLPLEHADANLE-T 152 (353)
T ss_pred cceecCCCCCceEEEe----cCCCCCCceEEECCCCCeeEecC------cceeEEecCcccceEEeecccccCCCccc-c
Confidence 4677899999988887 66777777777767777777532 12688999999999888644333333322 2
Q ss_pred eEEe-CCEEEEEcccCCCCCccCceeeecccccccCCCCceEEecCCCCCCCCCceeEEEE-eCCEEEEEcCCCCCCCcc
Q 013179 183 ATMV-EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITS-GGHYLLLFGGHGTGGWLS 260 (448)
Q Consensus 183 ~~~~-~~~lyv~GG~~~~~~~~~d~~~~~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~ 260 (448)
++.. .+.++..|-....+ .| ||.++.-+..+. |..-.-..+|+ -++.+|...=.
T Consensus 153 ~vfD~~G~lWFt~q~G~yG-------rL------dPa~~~i~vfpa----PqG~gpyGi~atpdGsvwyasla------- 208 (353)
T COG4257 153 AVFDPWGNLWFTGQIGAYG-------RL------DPARNVISVFPA----PQGGGPYGICATPDGSVWYASLA------- 208 (353)
T ss_pred eeeCCCccEEEeeccccce-------ec------CcccCceeeecc----CCCCCCcceEECCCCcEEEEecc-------
Confidence 2333 46677666443333 23 777777666542 22222234444 46677775321
Q ss_pred cccceeCcEEEEEcCCCceEEeccCCCC-CCCccceEEEEECCEEEEEccCCCCCccCceEEecCCCCcccCceecCCCC
Q 013179 261 RYDIYYNDTIILDRLSAQWKRLPIGNEP-PPARAYHSMTCLGSLYLLFGGFDGKSTFGDIWWLVPEEDPIAKRYTESPPK 339 (448)
Q Consensus 261 ~~~~~~~~v~~yd~~~~~W~~~~~~~~~-p~~r~~~~~~~~~~~i~v~GG~~~~~~~~d~w~~~~~yd~~~~~w~~~~~~ 339 (448)
-|-+-+.|+.+..=..++..... ...|.. .+---+++.+-- -+.. . ...|||...+|.+-
T Consensus 209 -----gnaiaridp~~~~aev~p~P~~~~~gsRri--wsdpig~~witt--wg~g---~----l~rfdPs~~sW~ey--- 269 (353)
T COG4257 209 -----GNAIARIDPFAGHAEVVPQPNALKAGSRRI--WSDPIGRAWITT--WGTG---S----LHRFDPSVTSWIEY--- 269 (353)
T ss_pred -----ccceEEcccccCCcceecCCCccccccccc--ccCccCcEEEec--cCCc---e----eeEeCcccccceee---
Confidence 14566777776644444332110 001100 000113444331 0001 1 33688888889887
Q ss_pred CCCCCCc
Q 013179 340 VLPENKD 346 (448)
Q Consensus 340 ~~~~~~~ 346 (448)
++|++..
T Consensus 270 pLPgs~a 276 (353)
T COG4257 270 PLPGSKA 276 (353)
T ss_pred eCCCCCC
Confidence 6666543
No 107
>PRK02889 tolB translocation protein TolB; Provisional
Probab=80.24 E-value=67 Score=32.10 Aligned_cols=149 Identities=13% Similarity=0.117 Sum_probs=72.5
Q ss_pred CcEEEEECCCCcEEEeecCCCCCCcCcccEEEEECCc-EEEEEecCCCCccCCceEEEeCCCCceEeecCCCCCCCccCC
Q 013179 102 GDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCG 180 (448)
Q Consensus 102 ~~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~ 180 (448)
..+|.+|+.+++=..+.. .+.. ..+.+...++ +|++....++ ..++|.+|..+...+++. ... ....
T Consensus 220 ~~I~~~dl~~g~~~~l~~---~~g~--~~~~~~SPDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~lt---~~~-~~~~ 287 (427)
T PRK02889 220 PVVYVHDLATGRRRVVAN---FKGS--NSAPAWSPDGRTLAVALSRDG---NSQIYTVNADGSGLRRLT---QSS-GIDT 287 (427)
T ss_pred cEEEEEECCCCCEEEeec---CCCC--ccceEECCCCCEEEEEEccCC---CceEEEEECCCCCcEECC---CCC-CCCc
Confidence 469999999887666542 2211 1122222344 5554443333 357999999888777664 211 1111
Q ss_pred ceeEEeCCEEEEEcccCCCCCccCceeeecccccccCCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCCCCCCCcc
Q 013179 181 HTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLS 260 (448)
Q Consensus 181 ~~~~~~~~~lyv~GG~~~~~~~~~d~~~~~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~ 260 (448)
.....-+++.++|....... .++|. ++..+...+.+...+. .....+....++.|+.......
T Consensus 288 ~~~wSpDG~~l~f~s~~~g~---~~Iy~------~~~~~g~~~~lt~~g~---~~~~~~~SpDG~~Ia~~s~~~g----- 350 (427)
T PRK02889 288 EPFFSPDGRSIYFTSDRGGA---PQIYR------MPASGGAAQRVTFTGS---YNTSPRISPDGKLLAYISRVGG----- 350 (427)
T ss_pred CeEEcCCCCEEEEEecCCCC---cEEEE------EECCCCceEEEecCCC---CcCceEECCCCCEEEEEEccCC-----
Confidence 11122244433343221111 23333 3666777766653221 0111122123445554332211
Q ss_pred cccceeCcEEEEEcCCCceEEecc
Q 013179 261 RYDIYYNDTIILDRLSAQWKRLPI 284 (448)
Q Consensus 261 ~~~~~~~~v~~yd~~~~~W~~~~~ 284 (448)
...++++|+.+...+.+..
T Consensus 351 -----~~~I~v~d~~~g~~~~lt~ 369 (427)
T PRK02889 351 -----AFKLYVQDLATGQVTALTD 369 (427)
T ss_pred -----cEEEEEEECCCCCeEEccC
Confidence 1369999999888777654
No 108
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=80.10 E-value=50 Score=31.89 Aligned_cols=168 Identities=13% Similarity=0.142 Sum_probs=78.1
Q ss_pred ceeEEEE--CCeEEEEcccCCCCCCCcEEEEECCCCc--EEEeecCCCCCCcC-cccEEEEECCcEEEEEecCCCCccCC
Q 013179 79 FHIAVAI--DCHMFIFGGRFGSRRLGDFWVLDTDIWQ--WSELTSFGDLPSPR-DFAAASAIGNRKIVMYGGWDGKKWLS 153 (448)
Q Consensus 79 ~h~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~t~~--W~~~~~~~~~p~~r-~~~~~~~~~~~~iyv~GG~~~~~~~~ 153 (448)
-|.+... ++.+|+.- .-.+.+++|+..... ....... ..|.+- -.|.+..-..+.+||..-.+ +
T Consensus 146 ~H~v~~~pdg~~v~v~d-----lG~D~v~~~~~~~~~~~l~~~~~~-~~~~G~GPRh~~f~pdg~~~Yv~~e~s-----~ 214 (345)
T PF10282_consen 146 PHQVVFSPDGRFVYVPD-----LGADRVYVYDIDDDTGKLTPVDSI-KVPPGSGPRHLAFSPDGKYAYVVNELS-----N 214 (345)
T ss_dssp EEEEEE-TTSSEEEEEE-----TTTTEEEEEEE-TTS-TEEEEEEE-ECSTTSSEEEEEE-TTSSEEEEEETTT-----T
T ss_pred ceeEEECCCCCEEEEEe-----cCCCEEEEEEEeCCCceEEEeecc-ccccCCCCcEEEEcCCcCEEEEecCCC-----C
Confidence 3555544 34677752 123458888876655 5443221 122221 22433333445899986533 3
Q ss_pred ceEEE--eCCCCceEeecCCCCCCCc---c-CCceeEEe--CCEEEEEcccCCCCCccCceeeeccccccc--CCCCceE
Q 013179 154 DVYVL--DTISLEWMQLPVTGSVPPP---R-CGHTATMV--EKRLLIYGGRGGGGPIMGDLWALKGLIEEE--NETPGWT 223 (448)
Q Consensus 154 ~v~~y--d~~t~~W~~~~~~~~~p~~---r-~~~~~~~~--~~~lyv~GG~~~~~~~~~d~~~~~~~~~yd--~~~~~W~ 223 (448)
.|..| +..+..++.+.....+|.. . ..+.+.+. ++.||+---. . +.+..|+ .++.+.+
T Consensus 215 ~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~-~-----------~sI~vf~~d~~~g~l~ 282 (345)
T PF10282_consen 215 TVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG-S-----------NSISVFDLDPATGTLT 282 (345)
T ss_dssp EEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT-T-----------TEEEEEEECTTTTTEE
T ss_pred cEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc-C-----------CEEEEEEEecCCCceE
Confidence 34444 4447777766432233322 1 22223333 3467775432 1 2223334 4556666
Q ss_pred Eec---CCCCCCCCCceeEEEEeCCEEEEEcCCCCCCCcccccceeCcEEEE--EcCCCceEEecc
Q 013179 224 QLK---LPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIIL--DRLSAQWKRLPI 284 (448)
Q Consensus 224 ~~~---~~g~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~y--d~~~~~W~~~~~ 284 (448)
.+. ..|.. ||. .++...++.|||....+ +.|.+| |.++..+..+..
T Consensus 283 ~~~~~~~~G~~--Pr~-~~~s~~g~~l~Va~~~s------------~~v~vf~~d~~tG~l~~~~~ 333 (345)
T PF10282_consen 283 LVQTVPTGGKF--PRH-FAFSPDGRYLYVANQDS------------NTVSVFDIDPDTGKLTPVGS 333 (345)
T ss_dssp EEEEEEESSSS--EEE-EEE-TTSSEEEEEETTT------------TEEEEEEEETTTTEEEEEEE
T ss_pred EEEEEeCCCCC--ccE-EEEeCCCCEEEEEecCC------------CeEEEEEEeCCCCcEEEecc
Confidence 554 11222 222 12222556677755433 345544 667888887754
No 109
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=79.83 E-value=67 Score=31.83 Aligned_cols=222 Identities=12% Similarity=0.094 Sum_probs=107.6
Q ss_pred EEEECCcEEEEEcCCCCCcccCceEEEEcCCCcEEeeeecCCCCCCCCCCCCCcceeEEEE-CCeEEEEcccCCCCCCCc
Q 013179 25 AVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI-DCHMFIFGGRFGSRRLGD 103 (448)
Q Consensus 25 ~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~-~~~lyv~GG~~~~~~~~~ 103 (448)
+.+.+ +..+++|-. + .++.=+-.-.+|+.++... ..|.+ .+....+ ++.+++.|... .
T Consensus 142 v~f~~-~~g~~vG~~-G-----~il~T~DgG~tW~~~~~~~------~~p~~--~~~i~~~~~~~~~ivg~~G------~ 200 (398)
T PLN00033 142 ISFKG-KEGWIIGKP-A-----ILLHTSDGGETWERIPLSP------KLPGE--PVLIKATGPKSAEMVTDEG------A 200 (398)
T ss_pred eEEEC-CEEEEEcCc-e-----EEEEEcCCCCCceECcccc------CCCCC--ceEEEEECCCceEEEeccc------e
Confidence 33344 568887642 1 1222222345899876421 12222 2233334 45677777321 2
Q ss_pred EEEEECCCCcEEEeec-CCCCCCc--------------CcccEEEEECCcEEEEEecCCCCccCCceEE-EeCCCCceEe
Q 013179 104 FWVLDTDIWQWSELTS-FGDLPSP--------------RDFAAASAIGNRKIVMYGGWDGKKWLSDVYV-LDTISLEWMQ 167 (448)
Q Consensus 104 ~~~~d~~t~~W~~~~~-~~~~p~~--------------r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~-yd~~t~~W~~ 167 (448)
+++-+-.-.+|+.+.. ..+-|.. -..+.+....++.++++|-.. .+++ .|.-...|+.
T Consensus 201 v~~S~D~G~tW~~~~~~t~~~~l~~~~~s~~~g~~~y~Gsf~~v~~~~dG~~~~vg~~G------~~~~s~d~G~~~W~~ 274 (398)
T PLN00033 201 IYVTSNAGRNWKAAVEETVSATLNRTVSSGISGASYYTGTFSTVNRSPDGDYVAVSSRG------NFYLTWEPGQPYWQP 274 (398)
T ss_pred EEEECCCCCCceEcccccccccccccccccccccceeccceeeEEEcCCCCEEEEECCc------cEEEecCCCCcceEE
Confidence 5665556678988621 0000111 111222334556677766321 1343 3333334898
Q ss_pred ecCCCCCCCccCCceeEE-eCCEEEEEcccCCCCCccCceeeecccccccCCCC-----ceEEecCCCCCCCCCcee-EE
Q 013179 168 LPVTGSVPPPRCGHTATM-VEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETP-----GWTQLKLPGQAPSSRCGH-TI 240 (448)
Q Consensus 168 ~~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~d~~~~~~~~~yd~~~~-----~W~~~~~~g~~p~~r~~~-~~ 240 (448)
+. .+.++.-.++.. .++.+++.|....- +.. +.... +|+.+. .+..+... ++
T Consensus 275 ~~----~~~~~~l~~v~~~~dg~l~l~g~~G~l-------~~S------~d~G~~~~~~~f~~~~----~~~~~~~l~~v 333 (398)
T PLN00033 275 HN----RASARRIQNMGWRADGGLWLLTRGGGL-------YVS------KGTGLTEEDFDFEEAD----IKSRGFGILDV 333 (398)
T ss_pred ec----CCCccceeeeeEcCCCCEEEEeCCceE-------EEe------cCCCCcccccceeecc----cCCCCcceEEE
Confidence 85 333333333333 36788887754221 111 22223 455543 22223222 33
Q ss_pred EE-eCCEEEEEcCCCCCCCcccccceeCcEEEEEcCCCceEEeccCCCCCCCccceEEEEE-CCEEEEEcc
Q 013179 241 TS-GGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPIGNEPPPARAYHSMTCL-GSLYLLFGG 309 (448)
Q Consensus 241 ~~-~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~i~v~GG 309 (448)
.. .++.+++.|... -+++-....++|++.......+... +.+... +++.|+.|-
T Consensus 334 ~~~~d~~~~a~G~~G-------------~v~~s~D~G~tW~~~~~~~~~~~~l--y~v~f~~~~~g~~~G~ 389 (398)
T PLN00033 334 GYRSKKEAWAAGGSG-------------ILLRSTDGGKSWKRDKGADNIAANL--YSVKFFDDKKGFVLGN 389 (398)
T ss_pred EEcCCCcEEEEECCC-------------cEEEeCCCCcceeEccccCCCCcce--eEEEEcCCCceEEEeC
Confidence 33 466888888643 2566666778999987432222222 244433 478888874
No 110
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=79.35 E-value=59 Score=30.95 Aligned_cols=104 Identities=10% Similarity=-0.044 Sum_probs=50.7
Q ss_pred EEEEEcCCCCCcccCceEEEEcCC-CcEEeeeecCCCCCCCCCCCCCcceeEEE--ECCeEEEEcccCCCCCCCcEEEEE
Q 013179 32 KVVVFGGLVDKRFLSDVVVYDIDN-KLWFQPECTGNGSNGQVGPGPRAFHIAVA--IDCHMFIFGGRFGSRRLGDFWVLD 108 (448)
Q Consensus 32 ~iyv~GG~~~~~~~~~~~~yd~~~-~~W~~~~~~~~~~~~~~~p~~R~~h~~~~--~~~~lyv~GG~~~~~~~~~~~~~d 108 (448)
.+|+..+.+ +.+..||+.+ ++++.+.... .....+.++. .+..||+.+. . ...+..|+
T Consensus 3 ~~y~~~~~~-----~~I~~~~~~~~g~l~~~~~~~---------~~~~~~~l~~spd~~~lyv~~~-~----~~~i~~~~ 63 (330)
T PRK11028 3 IVYIASPES-----QQIHVWNLNHEGALTLLQVVD---------VPGQVQPMVISPDKRHLYVGVR-P----EFRVLSYR 63 (330)
T ss_pred EEEEEcCCC-----CCEEEEEECCCCceeeeeEEe---------cCCCCccEEECCCCCEEEEEEC-C----CCcEEEEE
Confidence 467765542 4478888864 5776665432 1111122222 2445777543 2 24566677
Q ss_pred CC-CCcEEEeecCCCCCCcCcccEEEEECCc-EEEEEecCCCCccCCceEEEeCCC
Q 013179 109 TD-IWQWSELTSFGDLPSPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTIS 162 (448)
Q Consensus 109 ~~-t~~W~~~~~~~~~p~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~t 162 (448)
+. +++++.+.. .+.+..-+.++...++ .+|+.. +. .+.+..|++++
T Consensus 64 ~~~~g~l~~~~~---~~~~~~p~~i~~~~~g~~l~v~~-~~----~~~v~v~~~~~ 111 (330)
T PRK11028 64 IADDGALTFAAE---SPLPGSPTHISTDHQGRFLFSAS-YN----ANCVSVSPLDK 111 (330)
T ss_pred ECCCCceEEeee---ecCCCCceEEEECCCCCEEEEEE-cC----CCeEEEEEECC
Confidence 65 566765543 2222111223333333 566653 22 24577777754
No 111
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=78.42 E-value=54 Score=30.00 Aligned_cols=218 Identities=14% Similarity=0.163 Sum_probs=91.0
Q ss_pred ECCcEEEEEcCC--CCCcccCceEEEE---cCCCcEEeeeecCCCCCCCCCCCCCcceeEEEECCeEEEEcccCCCCCCC
Q 013179 28 IGKSKVVVFGGL--VDKRFLSDVVVYD---IDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLG 102 (448)
Q Consensus 28 ~~~~~iyv~GG~--~~~~~~~~~~~yd---~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~lyv~GG~~~~~~~~ 102 (448)
++ +++|.+=-. ..+..+.....|| .....|+.-...+-.......-..-.-|+.+.+++.-|.+|=.+++-...
T Consensus 83 ~~-NRLfa~iEtR~~a~~km~~~~Lw~RpMF~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHnGD~sPR 161 (367)
T PF12217_consen 83 VG-NRLFAVIETRTVASNKMVRAELWSRPMFHDSPWRITELGTIASFTSAGVAVTELHSFATIDDNQFAVGYHNGDVSPR 161 (367)
T ss_dssp ET-TEEEEEEEEEETTT--EEEEEEEEEE-STTS--EEEEEES-TT--------SEEEEEEE-SSS-EEEEEEE-SSSS-
T ss_pred ec-ceeeEEEeehhhhhhhhhhhhhhcccccccCCceeeecccccccccccceeeeeeeeeEecCCceeEEeccCCCCcc
Confidence 56 566654321 1222333444455 46778876543321000001112345689999999888998665543322
Q ss_pred cE--EEEECC--C-CcEEEeecCCCCCCcCcccE---EEEECCcEEEEEe-cCCCCccCCceEEEeCCCCceEeecCCCC
Q 013179 103 DF--WVLDTD--I-WQWSELTSFGDLPSPRDFAA---ASAIGNRKIVMYG-GWDGKKWLSDVYVLDTISLEWMQLPVTGS 173 (448)
Q Consensus 103 ~~--~~~d~~--t-~~W~~~~~~~~~p~~r~~~~---~~~~~~~~iyv~G-G~~~~~~~~~v~~yd~~t~~W~~~~~~~~ 173 (448)
.+ ..|... + ....... +|......+ ++-.-++.+|+.. |..+...-+.+.+-+..-.+|+.+..
T Consensus 162 e~G~~yfs~~~~sp~~~vrr~----i~sey~~~AsEPCvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slrf--- 234 (367)
T PF12217_consen 162 ELGFLYFSDAFASPGVFVRRI----IPSEYERNASEPCVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLRF--- 234 (367)
T ss_dssp EEEEEEETTTTT-TT--EEEE------GGG-TTEEEEEEEEETTEEEEEEEES-TTS---EEEEESSTTSS-EEEE----
T ss_pred eeeEEEecccccCCcceeeee----chhhhccccccchhhhhCCEEEEEEcCcCCCCCcceeeeecccCCchhhccc---
Confidence 32 222111 1 1111111 222222222 2223456999875 44444555678888888899999963
Q ss_pred CCCcc--CCceeEEeCCEEEEEcccCCCCC----ccCc---------eeeecccccccCCCCceEEecCC---CCC-CCC
Q 013179 174 VPPPR--CGHTATMVEKRLLIYGGRGGGGP----IMGD---------LWALKGLIEEENETPGWTQLKLP---GQA-PSS 234 (448)
Q Consensus 174 ~p~~r--~~~~~~~~~~~lyv~GG~~~~~~----~~~d---------~~~~~~~~~yd~~~~~W~~~~~~---g~~-p~~ 234 (448)
|... ...-.+.+++.||+||-....+. ..++ .+.--.+..+.++.-+|..+... |.. ..+
T Consensus 235 -p~nvHhtnlPFakvgD~l~mFgsERA~~EWE~G~~D~RY~~~yPRtF~~k~nv~~W~~d~~ew~nitdqIYqG~ivNSa 313 (367)
T PF12217_consen 235 -PNNVHHTNLPFAKVGDVLYMFGSERAENEWEGGEPDNRYRANYPRTFMLKVNVSDWSLDDVEWVNITDQIYQGGIVNSA 313 (367)
T ss_dssp -TT---SS---EEEETTEEEEEEE-SSTT-SSTT-----SS-B--EEEEEEEETTT---TT---EEEEE-BB--SSS---
T ss_pred -cccccccCCCceeeCCEEEEEeccccccccccCCCcccccccCCceEEEEeecccCCccceEEEEeecceecccccccc
Confidence 3222 22233556999999997543211 1111 11112344557778888877531 222 233
Q ss_pred CceeEEEEeCCEE-EEEcCCC
Q 013179 235 RCGHTITSGGHYL-LLFGGHG 254 (448)
Q Consensus 235 r~~~~~~~~~~~i-~v~GG~~ 254 (448)
..--+.|+.++.| |+|||.+
T Consensus 314 vGVGSv~~KD~~lyy~FGgED 334 (367)
T PF12217_consen 314 VGVGSVVVKDGWLYYIFGGED 334 (367)
T ss_dssp SEEEEEEEETTEEEEEEEEB-
T ss_pred ccceeEEEECCEEEEEecCcc
Confidence 3333566677866 4888843
No 112
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=75.53 E-value=89 Score=30.97 Aligned_cols=116 Identities=13% Similarity=0.132 Sum_probs=57.5
Q ss_pred CCcEEEEEcCCCCCcccCceEEEEcCCCcEEeeeecCCCCCCCCCCCCCcceeEEEECCeEEEEcccCCCCCCCcEEEEE
Q 013179 29 GKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLD 108 (448)
Q Consensus 29 ~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~~d 108 (448)
..+..+++|-.. .+..=+---++|........ ..........++...+++.|+.|-. + -+..=.
T Consensus 99 d~~~GwAVG~~G------~IL~T~DGG~tW~~~~~~~~----~~~~~~~~l~~v~f~~~~g~~vG~~-G-----~il~T~ 162 (398)
T PLN00033 99 DPTHGFLLGTRQ------TLLETKDGGKTWVPRSIPSA----EDEDFNYRFNSISFKGKEGWIIGKP-A-----ILLHTS 162 (398)
T ss_pred CCCEEEEEcCCC------EEEEEcCCCCCceECccCcc----cccccccceeeeEEECCEEEEEcCc-e-----EEEEEc
Confidence 445788888631 12222223447887542110 0001111124444557788888642 1 133333
Q ss_pred CCCCcEEEeecCCCCCCcCcccEEEEECCcEEEEEecCCCCccCCceEEEeCCCCceEee
Q 013179 109 TDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQL 168 (448)
Q Consensus 109 ~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~ 168 (448)
-.-.+|+++.....+|.. .+....++++.++++|.. ..+++-+-.-.+|+.+
T Consensus 163 DgG~tW~~~~~~~~~p~~--~~~i~~~~~~~~~ivg~~------G~v~~S~D~G~tW~~~ 214 (398)
T PLN00033 163 DGGETWERIPLSPKLPGE--PVLIKATGPKSAEMVTDE------GAIYVTSNAGRNWKAA 214 (398)
T ss_pred CCCCCceECccccCCCCC--ceEEEEECCCceEEEecc------ceEEEECCCCCCceEc
Confidence 345789988642223333 233344555568887732 2255555455789987
No 113
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=75.45 E-value=20 Score=35.47 Aligned_cols=111 Identities=19% Similarity=0.183 Sum_probs=61.8
Q ss_pred cEEEEECCcEEEEEecCCCCccCCceEEEeCCCCceEeecCCCCCCCccCCceeE-------EeCCEEEEEcccCCCCCc
Q 013179 130 AAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTAT-------MVEKRLLIYGGRGGGGPI 202 (448)
Q Consensus 130 ~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~-------~~~~~lyv~GG~~~~~~~ 202 (448)
+++..-.||+++..|+-.+. +-.||..+..- ......|++- ..++.+++.|+-+.-.
T Consensus 72 ~s~~fR~DG~LlaaGD~sG~-----V~vfD~k~r~i---------LR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~-- 135 (487)
T KOG0310|consen 72 YSVDFRSDGRLLAAGDESGH-----VKVFDMKSRVI---------LRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVV-- 135 (487)
T ss_pred eEEEeecCCeEEEccCCcCc-----EEEeccccHHH---------HHHHhhccCceeEEEecccCCeEEEecCCCceE--
Confidence 44444467899999986654 67888444111 1111222221 2378899988764321
Q ss_pred cCceeeecccccccCCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCCCCCCCcccccceeCcEEEEEcCCC-ceE
Q 013179 203 MGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSA-QWK 280 (448)
Q Consensus 203 ~~d~~~~~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~-~W~ 280 (448)
..+|..+..- +....|.--.-|++ ++...+++|++.||++. .+-.||+.+. .|.
T Consensus 136 ----------k~~d~s~a~v-~~~l~~htDYVR~g-~~~~~~~hivvtGsYDg------------~vrl~DtR~~~~~v 190 (487)
T KOG0310|consen 136 ----------KYWDLSTAYV-QAELSGHTDYVRCG-DISPANDHIVVTGSYDG------------KVRLWDTRSLTSRV 190 (487)
T ss_pred ----------EEEEcCCcEE-EEEecCCcceeEee-ccccCCCeEEEecCCCc------------eEEEEEeccCCcee
Confidence 1224444442 33433333333332 44457789999999875 4667777666 443
No 114
>PRK02889 tolB translocation protein TolB; Provisional
Probab=75.15 E-value=93 Score=31.05 Aligned_cols=103 Identities=15% Similarity=0.042 Sum_probs=54.7
Q ss_pred CceEEEEcCCCcEEeeeecCCCCCCCCCCCCCcceeEEEEC-CeEEEEcccCCCCCCCcEEEEECCCCcEEEeecCCCCC
Q 013179 46 SDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAID-CHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLP 124 (448)
Q Consensus 46 ~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~-~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~p 124 (448)
..+|.+|+.+++=..+... +. ...+....-+ .+|++.....+ ..++|.+|..+...+++... .
T Consensus 220 ~~I~~~dl~~g~~~~l~~~---------~g-~~~~~~~SPDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~lt~~---~ 283 (427)
T PRK02889 220 PVVYVHDLATGRRRVVANF---------KG-SNSAPAWSPDGRTLAVALSRDG---NSQIYTVNADGSGLRRLTQS---S 283 (427)
T ss_pred cEEEEEECCCCCEEEeecC---------CC-CccceEECCCCCEEEEEEccCC---CceEEEEECCCCCcEECCCC---C
Confidence 4699999998865555321 10 1112222323 35544333222 25799999988877666431 1
Q ss_pred CcCcccEEEEECCc-EEEEEecCCCCccCCceEEEeCCCCceEeec
Q 013179 125 SPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTISLEWMQLP 169 (448)
Q Consensus 125 ~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~ 169 (448)
... ...+...|+ .|++.....+ ...+|.++..+...+.+.
T Consensus 284 -~~~-~~~~wSpDG~~l~f~s~~~g---~~~Iy~~~~~~g~~~~lt 324 (427)
T PRK02889 284 -GID-TEPFFSPDGRSIYFTSDRGG---APQIYRMPASGGAAQRVT 324 (427)
T ss_pred -CCC-cCeEEcCCCCEEEEEecCCC---CcEEEEEECCCCceEEEe
Confidence 111 112233344 4544332222 246899998888877775
No 115
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=74.49 E-value=70 Score=29.31 Aligned_cols=210 Identities=12% Similarity=0.116 Sum_probs=88.3
Q ss_pred cEEE--EEcC-CCCCcccCceEEEEcCCC-cEEeeeecCCCCCCCCCCC-CCcceeEEEECCeEEEEcccC--CCCCCCc
Q 013179 31 SKVV--VFGG-LVDKRFLSDVVVYDIDNK-LWFQPECTGNGSNGQVGPG-PRAFHIAVAIDCHMFIFGGRF--GSRRLGD 103 (448)
Q Consensus 31 ~~iy--v~GG-~~~~~~~~~~~~yd~~~~-~W~~~~~~~~~~~~~~~p~-~R~~h~~~~~~~~lyv~GG~~--~~~~~~~ 103 (448)
+.|| .++| ..+-..+.-.|+=.-..+ +|+...-..+- -+.-|. .-.+.++-+++++||.+=-.. .+..+..
T Consensus 26 ~VIYAPfM~~~RHGv~~LhvaWVkSgDdG~TWttPEwLtd~--H~~yptvnyHCmSMGv~~NRLfa~iEtR~~a~~km~~ 103 (367)
T PF12217_consen 26 NVIYAPFMAGDRHGVDNLHVAWVKSGDDGQTWTTPEWLTDL--HPDYPTVNYHCMSMGVVGNRLFAVIETRTVASNKMVR 103 (367)
T ss_dssp TEEEEEEEEESSSSSTT-EEEEEEESSTTSS----EESS-----TTTTTEEEE-B-EEEETTEEEEEEEEEETTT--EEE
T ss_pred CeeecccccccccCccceEEEEEEecCCCCcccCchhhhhc--CCCCCccceeeeeeeeecceeeEEEeehhhhhhhhhh
Confidence 5666 2333 334455555666655544 68654433210 001111 122456677899998874321 1222223
Q ss_pred EEEEE---CCCCcEEEeecCCCCCC-------cCcccEEEEECCcEEEEEecCCCCccCCce--EEEe----CCCCceEe
Q 013179 104 FWVLD---TDIWQWSELTSFGDLPS-------PRDFAAASAIGNRKIVMYGGWDGKKWLSDV--YVLD----TISLEWMQ 167 (448)
Q Consensus 104 ~~~~d---~~t~~W~~~~~~~~~p~-------~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v--~~yd----~~t~~W~~ 167 (448)
...++ ...+.|+.-.. +..|. .-.-|+.+.+.+ .-|.+|=.+++....++ ..|. .....-.+
T Consensus 104 ~~Lw~RpMF~~spW~~teL-~~~~~~~~a~~~vTe~HSFa~i~~-~~fA~GyHnGD~sPRe~G~~yfs~~~~sp~~~vrr 181 (367)
T PF12217_consen 104 AELWSRPMFHDSPWRITEL-GTIASFTSAGVAVTELHSFATIDD-NQFAVGYHNGDVSPRELGFLYFSDAFASPGVFVRR 181 (367)
T ss_dssp EEEEEEE-STTS--EEEEE-ES-TT--------SEEEEEEE-SS-S-EEEEEEE-SSSS-EEEEEEETTTTT-TT--EEE
T ss_pred hhhhcccccccCCceeeec-ccccccccccceeeeeeeeeEecC-CceeEEeccCCCCcceeeEEEecccccCCcceeee
Confidence 33333 46778866432 12333 345678888865 55677755544333332 2221 11111111
Q ss_pred ecCCCCCCCccCCceeEEeCCEEEEEcccCCCCCccCceeeecccccccCCCCceEEecCCCCCCCCCceeEEEEeCCEE
Q 013179 168 LPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYL 247 (448)
Q Consensus 168 ~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~~~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~~~~~i 247 (448)
.-++ .....-...+.-.+++.||+.--.......-. .+.+-+.....|+.+..+.... -...-.+..++.|
T Consensus 182 ~i~s-ey~~~AsEPCvkyY~g~LyLtTRgt~~~~~GS------~L~rs~d~G~~w~slrfp~nvH--htnlPFakvgD~l 252 (367)
T PF12217_consen 182 IIPS-EYERNASEPCVKYYDGVLYLTTRGTLPTNPGS------SLHRSDDNGQNWSSLRFPNNVH--HTNLPFAKVGDVL 252 (367)
T ss_dssp E--G-GG-TTEEEEEEEEETTEEEEEEEES-TTS---------EEEEESSTTSS-EEEE-TT-----SS---EEEETTEE
T ss_pred echh-hhccccccchhhhhCCEEEEEEcCcCCCCCcc------eeeeecccCCchhhcccccccc--ccCCCceeeCCEE
Confidence 1100 11122233445556999999873322222222 2333377888999987431111 1111345689999
Q ss_pred EEEcCC
Q 013179 248 LLFGGH 253 (448)
Q Consensus 248 ~v~GG~ 253 (448)
|+||-.
T Consensus 253 ~mFgsE 258 (367)
T PF12217_consen 253 YMFGSE 258 (367)
T ss_dssp EEEEE-
T ss_pred EEEecc
Confidence 999853
No 116
>PLN00181 protein SPA1-RELATED; Provisional
Probab=73.57 E-value=1.4e+02 Score=32.52 Aligned_cols=64 Identities=13% Similarity=-0.056 Sum_probs=33.2
Q ss_pred CeEEEEcccCCCCCCCcEEEEECCCCcEEEeecCCCCCCcCcccEEEEE-CCcEEEEEecCCCCccCCceEEEeCCCCc
Q 013179 87 CHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAI-GNRKIVMYGGWDGKKWLSDVYVLDTISLE 164 (448)
Q Consensus 87 ~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~t~~ 164 (448)
+..++.|+.++ .+..+|..+++-..... ... ..-.+++.. .++.+++.||.++. +..||+.+..
T Consensus 545 ~~~las~~~Dg-----~v~lWd~~~~~~~~~~~---~H~-~~V~~l~~~p~~~~~L~Sgs~Dg~-----v~iWd~~~~~ 609 (793)
T PLN00181 545 KSQVASSNFEG-----VVQVWDVARSQLVTEMK---EHE-KRVWSIDYSSADPTLLASGSDDGS-----VKLWSINQGV 609 (793)
T ss_pred CCEEEEEeCCC-----eEEEEECCCCeEEEEec---CCC-CCEEEEEEcCCCCCEEEEEcCCCE-----EEEEECCCCc
Confidence 44555565443 47888988765332211 111 111222222 24567777876543 7778876543
No 117
>smart00284 OLF Olfactomedin-like domains.
Probab=72.33 E-value=80 Score=29.04 Aligned_cols=184 Identities=13% Similarity=0.006 Sum_probs=95.4
Q ss_pred cEEEEEcCCCCCcccCceEEEEcC----CCcEEeeeecCCCCCCCCCCCCCcceeEEEECCeEEEEcccCCCCCCCcEEE
Q 013179 31 SKVVVFGGLVDKRFLSDVVVYDID----NKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWV 106 (448)
Q Consensus 31 ~~iyv~GG~~~~~~~~~~~~yd~~----~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~ 106 (448)
+++|++.+.. ...+.++.|.-. .+++...- .+|.+-.+-..++.++.||.--. ....+.+
T Consensus 35 ~~~wv~~~~~--~~~~~v~ey~~~~~f~~~~~~~~~---------~Lp~~~~GtG~VVYngslYY~~~-----~s~~iiK 98 (255)
T smart00284 35 SLYWYMPLNT--RVLRSVREYSSMSDFQMGKNPTDH---------PLPHAGQGTGVVVYNGSLYFNKF-----NSHDICR 98 (255)
T ss_pred ceEEEEcccc--CCCcEEEEecCHHHHhccCCceEE---------ECCCccccccEEEECceEEEEec-----CCccEEE
Confidence 6788876652 122345555432 23332211 24666677788889999987533 2356999
Q ss_pred EECCCCcEEEeecCCCCCCc----Cc-----cc---EEEEECCcEEEEE-ecCCCCccCCceEEEeCCCC----ceEeec
Q 013179 107 LDTDIWQWSELTSFGDLPSP----RD-----FA---AASAIGNRKIVMY-GGWDGKKWLSDVYVLDTISL----EWMQLP 169 (448)
Q Consensus 107 ~d~~t~~W~~~~~~~~~p~~----r~-----~~---~~~~~~~~~iyv~-GG~~~~~~~~~v~~yd~~t~----~W~~~~ 169 (448)
||+.+++-..... +|.+ ++ ++ =.++.++ -|+|+ ......+ .--+-++|+.+. +|..
T Consensus 99 ydL~t~~v~~~~~---Lp~a~y~~~~~Y~~~~~sdiDlAvDE~-GLWvIYat~~~~g-~ivvSkLnp~tL~ve~tW~T-- 171 (255)
T smart00284 99 FDLTTETYQKEPL---LNGAGYNNRFPYAWGGFSDIDLAVDEN-GLWVIYATEQNAG-KIVISKLNPATLTIENTWIT-- 171 (255)
T ss_pred EECCCCcEEEEEe---cCccccccccccccCCCccEEEEEcCC-ceEEEEeccCCCC-CEEEEeeCcccceEEEEEEc--
Confidence 9999988653332 3332 11 11 1233344 34444 2211111 112345666654 4543
Q ss_pred CCCCCCCccCCceeEEeCCEEEEEcccCCCCCccCceeeecccccccCCCCceEEecCCCCCCCCCceeEEEE---eCCE
Q 013179 170 VTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITS---GGHY 246 (448)
Q Consensus 170 ~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~~~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~---~~~~ 246 (448)
..+.+ ...-+.++-+.||+.-...... -.-.+.||+.+.+=..+.. ..+.+...+++.- .+.+
T Consensus 172 ---~~~k~-sa~naFmvCGvLY~~~s~~~~~--------~~I~yayDt~t~~~~~~~i--~f~n~y~~~s~l~YNP~d~~ 237 (255)
T smart00284 172 ---TYNKR-SASNAFMICGILYVTRSLGSKG--------EKVFYAYDTNTGKEGHLDI--PFENMYEYISMLDYNPNDRK 237 (255)
T ss_pred ---CCCcc-cccccEEEeeEEEEEccCCCCC--------cEEEEEEECCCCccceeee--eeccccccceeceeCCCCCe
Confidence 23333 3346677899999996422211 1234577888776444432 2333333344443 4568
Q ss_pred EEEEc
Q 013179 247 LLLFG 251 (448)
Q Consensus 247 i~v~G 251 (448)
||+.-
T Consensus 238 LY~wd 242 (255)
T smart00284 238 LYAWN 242 (255)
T ss_pred EEEEe
Confidence 88863
No 118
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=72.10 E-value=78 Score=28.77 Aligned_cols=147 Identities=17% Similarity=0.140 Sum_probs=74.9
Q ss_pred CCCCCCCcEEEEECCcEEEEEcCCCCCcccCceEEEEcCCCcEEeeeecCCCCCCCCCCCCCcceeEEEECC-eEEEEcc
Q 013179 16 VPQPRSGHSAVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDC-HMFIFGG 94 (448)
Q Consensus 16 ~P~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~-~lyv~GG 94 (448)
+|-|-.+...+.-..+.|++.||- ..+++.|+++++-+..-. -.--+-|+.+.-+. -=.+-|+
T Consensus 112 ~evPeINam~ldP~enSi~~AgGD------~~~y~~dlE~G~i~r~~r----------GHtDYvH~vv~R~~~~qilsG~ 175 (325)
T KOG0649|consen 112 VEVPEINAMWLDPSENSILFAGGD------GVIYQVDLEDGRIQREYR----------GHTDYVHSVVGRNANGQILSGA 175 (325)
T ss_pred ccCCccceeEeccCCCcEEEecCC------eEEEEEEecCCEEEEEEc----------CCcceeeeeeecccCcceeecC
Confidence 344444444333356789999983 358999999998765421 12235566665322 2234555
Q ss_pred cCCCCCCCcEEEEECCCCcEEEeec-CCCCCCcC--ccc-EEEEECCcEEEEEecCCCCccCCceEEEeCCCCceEeecC
Q 013179 95 RFGSRRLGDFWVLDTDIWQWSELTS-FGDLPSPR--DFA-AASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPV 170 (448)
Q Consensus 95 ~~~~~~~~~~~~~d~~t~~W~~~~~-~~~~p~~r--~~~-~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~ 170 (448)
.++ .+.+.|..|.+-.++-. .......| .+- -++...+..-.|.||-. .+-.+++.+.+-..+-
T Consensus 176 EDG-----tvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp------~lslwhLrsse~t~vf- 243 (325)
T KOG0649|consen 176 EDG-----TVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGP------KLSLWHLRSSESTCVF- 243 (325)
T ss_pred CCc-----cEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCC------ceeEEeccCCCceEEE-
Confidence 444 37778888877655432 11111222 222 12332233455566522 2445565555544432
Q ss_pred CCCCCCccCCceeEEeCCEEEEEc
Q 013179 171 TGSVPPPRCGHTATMVEKRLLIYG 194 (448)
Q Consensus 171 ~~~~p~~r~~~~~~~~~~~lyv~G 194 (448)
|.|-.-|-+..+++.+.+.|
T Consensus 244 ----pipa~v~~v~F~~d~vl~~G 263 (325)
T KOG0649|consen 244 ----PIPARVHLVDFVDDCVLIGG 263 (325)
T ss_pred ----ecccceeEeeeecceEEEec
Confidence 33333344445555555544
No 119
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=70.53 E-value=92 Score=28.96 Aligned_cols=182 Identities=15% Similarity=0.069 Sum_probs=105.5
Q ss_pred ceEEEEcCCCcEEeeeecCCCCCCCCCCCCCc--ceeEEEEC--CeEEEEcccCCCCCCCcEEEEECCCCcEEEeecCCC
Q 013179 47 DVVVYDIDNKLWFQPECTGNGSNGQVGPGPRA--FHIAVAID--CHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGD 122 (448)
Q Consensus 47 ~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~--~h~~~~~~--~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~ 122 (448)
-+-++|+++..-+..+ +|..+. +--..+++ +.|+..|- .+ . -=++||.++.-+..+
T Consensus 125 aI~R~dpkt~evt~f~----------lp~~~a~~nlet~vfD~~G~lWFt~q-~G--~---yGrLdPa~~~i~vfp---- 184 (353)
T COG4257 125 AIGRLDPKTLEVTRFP----------LPLEHADANLETAVFDPWGNLWFTGQ-IG--A---YGRLDPARNVISVFP---- 184 (353)
T ss_pred eeEEecCcccceEEee----------cccccCCCcccceeeCCCccEEEeec-cc--c---ceecCcccCceeeec----
Confidence 5788888888776664 233332 22233333 46666653 21 1 126778777766554
Q ss_pred CCCcCcccEEEEECCcEEEEEecCCCCccCCceEEEeCCCCceEeecCCCCCCCccCCcee-EEe--CCEEEEEcccCCC
Q 013179 123 LPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTA-TMV--EKRLLIYGGRGGG 199 (448)
Q Consensus 123 ~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~-~~~--~~~lyv~GG~~~~ 199 (448)
.|.+-.-+.+|+..|+.+|+.- -.-+.+-+.|+.+..=+.++ .|.+....+- +.. .+++++-- .
T Consensus 185 aPqG~gpyGi~atpdGsvwyas-----lagnaiaridp~~~~aev~p----~P~~~~~gsRriwsdpig~~witt---w- 251 (353)
T COG4257 185 APQGGGPYGICATPDGSVWYAS-----LAGNAIARIDPFAGHAEVVP----QPNALKAGSRRIWSDPIGRAWITT---W- 251 (353)
T ss_pred cCCCCCCcceEECCCCcEEEEe-----ccccceEEcccccCCcceec----CCCcccccccccccCccCcEEEec---c-
Confidence 4555566778887788888752 11245777888777555553 2333111111 111 34555541 1
Q ss_pred CCccCceeeecccccccCCCCceEEecCCCCCCCCCceeEEEE-eCCEEEEEcCCCCCCCcccccceeCcEEEEEcCCCc
Q 013179 200 GPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITS-GGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQ 278 (448)
Q Consensus 200 ~~~~~d~~~~~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~ 278 (448)
---.+..|||.+..|..-+.++..+.+ .++-+ ..+++++.- .-.+.+-+||+++.+
T Consensus 252 --------g~g~l~rfdPs~~sW~eypLPgs~arp---ys~rVD~~grVW~se------------a~agai~rfdpeta~ 308 (353)
T COG4257 252 --------GTGSLHRFDPSVTSWIEYPLPGSKARP---YSMRVDRHGRVWLSE------------ADAGAIGRFDPETAR 308 (353)
T ss_pred --------CCceeeEeCcccccceeeeCCCCCCCc---ceeeeccCCcEEeec------------cccCceeecCcccce
Confidence 113456779999999998865543332 23333 345666632 223679999999999
Q ss_pred eEEecc
Q 013179 279 WKRLPI 284 (448)
Q Consensus 279 W~~~~~ 284 (448)
.+.++.
T Consensus 309 ftv~p~ 314 (353)
T COG4257 309 FTVLPI 314 (353)
T ss_pred EEEecC
Confidence 998765
No 120
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=70.41 E-value=1e+02 Score=29.34 Aligned_cols=96 Identities=10% Similarity=-0.033 Sum_probs=45.5
Q ss_pred CceEEEEcC-CCcEEeeeecCCCCCCCCCCCCCcceeEEEECC-eEEEEcccCCCCCCCcEEEEECCCCc--EEEeecCC
Q 013179 46 SDVVVYDID-NKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDC-HMFIFGGRFGSRRLGDFWVLDTDIWQ--WSELTSFG 121 (448)
Q Consensus 46 ~~~~~yd~~-~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~-~lyv~GG~~~~~~~~~~~~~d~~t~~--W~~~~~~~ 121 (448)
+.+..|++. ++++..+.... .+ ..-.|.++.-++ .||+..- . .+.+.+||+.++. ...+..
T Consensus 57 ~~i~~~~~~~~g~l~~~~~~~-------~~-~~p~~i~~~~~g~~l~v~~~-~----~~~v~v~~~~~~g~~~~~~~~-- 121 (330)
T PRK11028 57 FRVLSYRIADDGALTFAAESP-------LP-GSPTHISTDHQGRFLFSASY-N----ANCVSVSPLDKDGIPVAPIQI-- 121 (330)
T ss_pred CcEEEEEECCCCceEEeeeec-------CC-CCceEEEECCCCCEEEEEEc-C----CCeEEEEEECCCCCCCCceee--
Confidence 457777776 45666554321 11 111233333344 5666532 2 2457777775321 112221
Q ss_pred CCCCcCcccEEEEECCc-EEEEEecCCCCccCCceEEEeCCC
Q 013179 122 DLPSPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTIS 162 (448)
Q Consensus 122 ~~p~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~t 162 (448)
.+....-|.++...++ .+|+.. . ..+.+..||+.+
T Consensus 122 -~~~~~~~~~~~~~p~g~~l~v~~-~----~~~~v~v~d~~~ 157 (330)
T PRK11028 122 -IEGLEGCHSANIDPDNRTLWVPC-L----KEDRIRLFTLSD 157 (330)
T ss_pred -ccCCCcccEeEeCCCCCEEEEee-C----CCCEEEEEEECC
Confidence 2222233555554443 566543 2 134588898876
No 121
>PTZ00421 coronin; Provisional
Probab=70.25 E-value=1.3e+02 Score=30.72 Aligned_cols=64 Identities=9% Similarity=-0.033 Sum_probs=35.9
Q ss_pred CeEEEEcccCCCCCCCcEEEEECCCCcEEEeecCCCCCCcCcccEEEEECCcEEEEEecCCCCccCCceEEEeCCCCc
Q 013179 87 CHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLE 164 (448)
Q Consensus 87 ~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~ 164 (448)
+.+++.||.++ .+..+|+.+++-...-. .... .-.+++...++.+++.|+.++ .+..||+.+.+
T Consensus 138 ~~iLaSgs~Dg-----tVrIWDl~tg~~~~~l~--~h~~--~V~sla~spdG~lLatgs~Dg-----~IrIwD~rsg~ 201 (493)
T PTZ00421 138 MNVLASAGADM-----VVNVWDVERGKAVEVIK--CHSD--QITSLEWNLDGSLLCTTSKDK-----KLNIIDPRDGT 201 (493)
T ss_pred CCEEEEEeCCC-----EEEEEECCCCeEEEEEc--CCCC--ceEEEEEECCCCEEEEecCCC-----EEEEEECCCCc
Confidence 35777777543 47888988765322211 0111 112223334567777777654 37789988765
No 122
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=69.62 E-value=1.4e+02 Score=30.56 Aligned_cols=75 Identities=19% Similarity=0.174 Sum_probs=38.8
Q ss_pred cEEEEEcCCCCCcccCceEEEEcCCCc--EEeeeecCCCCCCCCCCCCCcceeEEEECCeEEEEcccCCC----CCCCcE
Q 013179 31 SKVVVFGGLVDKRFLSDVVVYDIDNKL--WFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGS----RRLGDF 104 (448)
Q Consensus 31 ~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~lyv~GG~~~~----~~~~~~ 104 (448)
++||+... ...++.+|..+++ |+.-.... ..+......+.++.++.+|+ |..... .....+
T Consensus 111 ~~V~v~~~------~g~v~AlD~~TG~~~W~~~~~~~------~~~~~~i~ssP~v~~~~v~v-g~~~~~~~~~~~~g~v 177 (488)
T cd00216 111 RKVFFGTF------DGRLVALDAETGKQVWKFGNNDQ------VPPGYTMTGAPTIVKKLVII-GSSGAEFFACGVRGAL 177 (488)
T ss_pred CeEEEecC------CCeEEEEECCCCCEeeeecCCCC------cCcceEecCCCEEECCEEEE-eccccccccCCCCcEE
Confidence 66665332 2468999998774 76532110 00000122333455666554 432221 123568
Q ss_pred EEEECCCCc--EEEee
Q 013179 105 WVLDTDIWQ--WSELT 118 (448)
Q Consensus 105 ~~~d~~t~~--W~~~~ 118 (448)
+.+|.+|++ |+.-.
T Consensus 178 ~alD~~TG~~~W~~~~ 193 (488)
T cd00216 178 RAYDVETGKLLWRFYT 193 (488)
T ss_pred EEEECCCCceeeEeec
Confidence 999998775 86543
No 123
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=68.54 E-value=1.2e+02 Score=29.62 Aligned_cols=186 Identities=15% Similarity=0.168 Sum_probs=87.7
Q ss_pred cCceEEEEcCCCc-EEeeeecCCCCCCCCCCCCCcceeEEEE---CCeEEEEcccCCCCCCCcEEEEECCCCcEEEeecC
Q 013179 45 LSDVVVYDIDNKL-WFQPECTGNGSNGQVGPGPRAFHIAVAI---DCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSF 120 (448)
Q Consensus 45 ~~~~~~yd~~~~~-W~~~~~~~~~~~~~~~p~~R~~h~~~~~---~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~ 120 (448)
.+.+.+.|..+++ -..++. ...-|..... +.++|+.+. + ..+-++|+.+.+- +..
T Consensus 15 ~~~v~viD~~t~~~~~~i~~------------~~~~h~~~~~s~Dgr~~yv~~r-d-----g~vsviD~~~~~~--v~~- 73 (369)
T PF02239_consen 15 SGSVAVIDGATNKVVARIPT------------GGAPHAGLKFSPDGRYLYVANR-D-----GTVSVIDLATGKV--VAT- 73 (369)
T ss_dssp GTEEEEEETTT-SEEEEEE-------------STTEEEEEE-TT-SSEEEEEET-T-----SEEEEEETTSSSE--EEE-
T ss_pred CCEEEEEECCCCeEEEEEcC------------CCCceeEEEecCCCCEEEEEcC-C-----CeEEEEECCcccE--EEE-
Confidence 3568899998875 333431 1122554433 457999853 2 3589999999883 221
Q ss_pred CCCCCcCcccEEEEECCcEEEEEecCCCCccCCceEEEeCCCCceEeecCCCCC----CCccCCceeEEeCCEEEEEccc
Q 013179 121 GDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSV----PPPRCGHTATMVEKRLLIYGGR 196 (448)
Q Consensus 121 ~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~----p~~r~~~~~~~~~~~lyv~GG~ 196 (448)
.+.+......++..+++..+.+.+. .+.+..+|..+.+=.+.-+.+.+ +.+|...-.....+..||+--.
T Consensus 74 --i~~G~~~~~i~~s~DG~~~~v~n~~----~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lk 147 (369)
T PF02239_consen 74 --IKVGGNPRGIAVSPDGKYVYVANYE----PGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLK 147 (369)
T ss_dssp --EE-SSEEEEEEE--TTTEEEEEEEE----TTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEET
T ss_pred --EecCCCcceEEEcCCCCEEEEEecC----CCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEc
Confidence 4455555555655555555555432 34688899887654432111111 2334322222234555655443
Q ss_pred CCCCCccCceeeecccccccCCCCceEEecCCCCCCCCCceeEEEEeC-CEEEEEcCCCCCCCcccccceeCcEEEEEcC
Q 013179 197 GGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGG-HYLLLFGGHGTGGWLSRYDIYYNDTIILDRL 275 (448)
Q Consensus 197 ~~~~~~~~d~~~~~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~~~-~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~ 275 (448)
.. ..+|.+ |.....=.... .....++-|-..... ++.|+.+ .. ..+.+-+.|.+
T Consensus 148 d~-----~~I~vV------dy~d~~~~~~~---~i~~g~~~~D~~~dpdgry~~va-~~----------~sn~i~viD~~ 202 (369)
T PF02239_consen 148 DT-----GEIWVV------DYSDPKNLKVT---TIKVGRFPHDGGFDPDGRYFLVA-AN----------GSNKIAVIDTK 202 (369)
T ss_dssp TT-----TEEEEE------ETTTSSCEEEE---EEE--TTEEEEEE-TTSSEEEEE-EG----------GGTEEEEEETT
T ss_pred cC-----CeEEEE------Eecccccccee---eecccccccccccCcccceeeec-cc----------ccceeEEEeec
Confidence 22 234444 32221111111 123456666665543 3444443 22 23578889988
Q ss_pred CCceEEe
Q 013179 276 SAQWKRL 282 (448)
Q Consensus 276 ~~~W~~~ 282 (448)
+++-..+
T Consensus 203 ~~k~v~~ 209 (369)
T PF02239_consen 203 TGKLVAL 209 (369)
T ss_dssp TTEEEEE
T ss_pred cceEEEE
Confidence 8765544
No 124
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=62.70 E-value=1.8e+02 Score=29.59 Aligned_cols=122 Identities=11% Similarity=0.041 Sum_probs=60.7
Q ss_pred ECCcEEEEEcCCCCCcccCceEEEEcCCCc--EEeeeecCCCCCCCCCCCCC-cceeEEEEC-CeEEEEcccCCCCCCCc
Q 013179 28 IGKSKVVVFGGLVDKRFLSDVVVYDIDNKL--WFQPECTGNGSNGQVGPGPR-AFHIAVAID-CHMFIFGGRFGSRRLGD 103 (448)
Q Consensus 28 ~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~~~~~~p~~R-~~h~~~~~~-~~lyv~GG~~~~~~~~~ 103 (448)
+.+++||+.... ..++.+|..+++ |+.-..... ....+. .....+..+ +++|+... ...
T Consensus 59 v~~g~vy~~~~~------g~l~AlD~~tG~~~W~~~~~~~~-----~~~~~~~~~~g~~~~~~~~V~v~~~------~g~ 121 (488)
T cd00216 59 VVDGDMYFTTSH------SALFALDAATGKVLWRYDPKLPA-----DRGCCDVVNRGVAYWDPRKVFFGTF------DGR 121 (488)
T ss_pred EECCEEEEeCCC------CcEEEEECCCChhhceeCCCCCc-----cccccccccCCcEEccCCeEEEecC------CCe
Confidence 334788875442 468999998774 876332110 000010 111223445 77776432 235
Q ss_pred EEEEECCCCc--EEEeecCCCCCCcCcccEEEEECCcEEEEEecCCCC----ccCCceEEEeCCCCc--eEee
Q 013179 104 FWVLDTDIWQ--WSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGK----KWLSDVYVLDTISLE--WMQL 168 (448)
Q Consensus 104 ~~~~d~~t~~--W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~----~~~~~v~~yd~~t~~--W~~~ 168 (448)
++.+|.+|++ |+.-......+......+.++. ++.+| +|..+.. .....++.||..+++ |+.-
T Consensus 122 v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~-~~~v~-vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~ 192 (488)
T cd00216 122 LVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV-KKLVI-IGSSGAEFFACGVRGALRAYDVETGKLLWRFY 192 (488)
T ss_pred EEEEECCCCCEeeeecCCCCcCcceEecCCCEEE-CCEEE-EeccccccccCCCCcEEEEEECCCCceeeEee
Confidence 8999998765 7764320000000011222333 43555 4533222 123568999998755 8753
No 125
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=61.60 E-value=2e+02 Score=29.70 Aligned_cols=99 Identities=14% Similarity=0.234 Sum_probs=51.2
Q ss_pred eeEEEECCeEEEEcccCCCCCCCcEEEEECCCCc--EEEeecCC-CC-C---CcCcccEEEEECCcEEEEEecCCCCccC
Q 013179 80 HIAVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQ--WSELTSFG-DL-P---SPRDFAAASAIGNRKIVMYGGWDGKKWL 152 (448)
Q Consensus 80 h~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~--W~~~~~~~-~~-p---~~r~~~~~~~~~~~~iyv~GG~~~~~~~ 152 (448)
.+-++.++.||+.... ..++.+|..|++ |+.-.... .. + ........++. +++||+.. .+
T Consensus 63 stPvv~~g~vyv~s~~------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~-~~~v~v~t-~d----- 129 (527)
T TIGR03075 63 SQPLVVDGVMYVTTSY------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY-DGKVFFGT-LD----- 129 (527)
T ss_pred cCCEEECCEEEEECCC------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEE-CCEEEEEc-CC-----
Confidence 3445678899986432 258899988764 76543210 00 0 00011122333 44777632 22
Q ss_pred CceEEEeCCCCc--eEeecCCCCCCC-ccCCceeEEeCCEEEEE
Q 013179 153 SDVYVLDTISLE--WMQLPVTGSVPP-PRCGHTATMVEKRLLIY 193 (448)
Q Consensus 153 ~~v~~yd~~t~~--W~~~~~~~~~p~-~r~~~~~~~~~~~lyv~ 193 (448)
..++.+|..+++ |+.-. ..... .....+.++.++++|+-
T Consensus 130 g~l~ALDa~TGk~~W~~~~--~~~~~~~~~tssP~v~~g~Vivg 171 (527)
T TIGR03075 130 ARLVALDAKTGKVVWSKKN--GDYKAGYTITAAPLVVKGKVITG 171 (527)
T ss_pred CEEEEEECCCCCEEeeccc--ccccccccccCCcEEECCEEEEe
Confidence 348999998766 76532 11111 11223445568887764
No 126
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=60.03 E-value=1.4e+02 Score=27.36 Aligned_cols=155 Identities=15% Similarity=0.216 Sum_probs=76.8
Q ss_pred EEECCcEEEEEcCCC-CCcccCceEEEEcCCC-cEEeeeecCCCCCCCCCCCCCcceeEEE-E-CCeEEEEcccCCCCCC
Q 013179 26 VNIGKSKVVVFGGLV-DKRFLSDVVVYDIDNK-LWFQPECTGNGSNGQVGPGPRAFHIAVA-I-DCHMFIFGGRFGSRRL 101 (448)
Q Consensus 26 ~~~~~~~iyv~GG~~-~~~~~~~~~~yd~~~~-~W~~~~~~~~~~~~~~~p~~R~~h~~~~-~-~~~lyv~GG~~~~~~~ 101 (448)
+.+.++.+++. .+. .......+..|....+ +|+...... +.....+.+.+ . ++.|+++-......
T Consensus 114 i~~~~G~l~~~-~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~--------~~~~~~e~~~~~~~dG~l~~~~R~~~~~-- 182 (275)
T PF13088_consen 114 IQLPDGRLIAP-YYHESGGSFSAFVYYSDDGGKTWSSGSPIP--------DGQGECEPSIVELPDGRLLAVFRTEGND-- 182 (275)
T ss_dssp EEECTTEEEEE-EEEESSCEEEEEEEEESSTTSSEEEEEECE--------CSEEEEEEEEEEETTSEEEEEEEECSST--
T ss_pred eEecCCCEEEE-EeeccccCcceEEEEeCCCCceeecccccc--------ccCCcceeEEEECCCCcEEEEEEccCCC--
Confidence 34556777776 211 1112334555666554 598876321 22234444443 2 56888886543111
Q ss_pred CcEEEEECC-CCcEEEeecCCCCCCcCcccEEEEECCcEEEEEecCCCCccCCceEEEeCCCCceEeecCCCCCCCccCC
Q 013179 102 GDFWVLDTD-IWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCG 180 (448)
Q Consensus 102 ~~~~~~d~~-t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~ 180 (448)
.-...+... -.+|+...+. .+|.......+....++.++++.........-.++.-.-...+|.....-..-+...++
T Consensus 183 ~~~~~~S~D~G~TWs~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~l~~S~D~g~tW~~~~~i~~~~~~~~~ 261 (275)
T PF13088_consen 183 DIYISRSTDGGRTWSPPQPT-NLPNPNSSISLVRLSDGRLLLVYNNPDGRSNLSLYVSEDGGKTWSRPKTIDDGPNGDSG 261 (275)
T ss_dssp EEEEEEESSTTSS-EEEEEE-ECSSCCEEEEEEECTTSEEEEEEECSSTSEEEEEEEECTTCEEEEEEEEEEEEE-CCEE
T ss_pred cEEEEEECCCCCcCCCceec-ccCcccCCceEEEcCCCCEEEEEECCCCCCceEEEEEeCCCCcCCccEEEeCCCCCcEE
Confidence 223334444 4479876531 36666655555666677888887732222222233333347889876411111211233
Q ss_pred -ceeEEe-CCEEEE
Q 013179 181 -HTATMV-EKRLLI 192 (448)
Q Consensus 181 -~~~~~~-~~~lyv 192 (448)
.+++.. +++|||
T Consensus 262 Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 262 YPSLTQLPDGKLYI 275 (275)
T ss_dssp EEEEEEEETTEEEE
T ss_pred CCeeEEeCCCcCCC
Confidence 333444 568886
No 127
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=59.57 E-value=1.5e+02 Score=27.42 Aligned_cols=107 Identities=21% Similarity=0.259 Sum_probs=64.1
Q ss_pred EEEECCcEEEEEcCCCCCcccCceEEEEcCCCc--EEeeeecCCCCCCCCCCCCCcceeEEEECCeEEEEcccCCCCCCC
Q 013179 25 AVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKL--WFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLG 102 (448)
Q Consensus 25 ~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~lyv~GG~~~~~~~~ 102 (448)
.+++++.+-|++=|... ..+-.-|+.+++ |+.+ -..|...+++++++. .|+|-+++.
T Consensus 16 LVV~~dskT~v~igSHs----~~~~avd~~sG~~~We~i------------lg~RiE~sa~vvgdf-VV~GCy~g~---- 74 (354)
T KOG4649|consen 16 LVVCNDSKTLVVIGSHS----GIVIAVDPQSGNLIWEAI------------LGVRIECSAIVVGDF-VVLGCYSGG---- 74 (354)
T ss_pred EEEecCCceEEEEecCC----ceEEEecCCCCcEEeehh------------hCceeeeeeEEECCE-EEEEEccCc----
Confidence 44456566666656432 347778888874 8765 346888999999988 677766653
Q ss_pred cEEEEECCCC--cEEEeecCCCCCCcCcccEEEEECCcEEEEEecCCCCccCCceEEEeCCCCc
Q 013179 103 DFWVLDTDIW--QWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLE 164 (448)
Q Consensus 103 ~~~~~d~~t~--~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~ 164 (448)
+|.++..|+ -|.-... ...-..+.+....+-||+ |-.++ .+|.+|+.+..
T Consensus 75 -lYfl~~~tGs~~w~f~~~-----~~vk~~a~~d~~~glIyc-gshd~-----~~yalD~~~~~ 126 (354)
T KOG4649|consen 75 -LYFLCVKTGSQIWNFVIL-----ETVKVRAQCDFDGGLIYC-GSHDG-----NFYALDPKTYG 126 (354)
T ss_pred -EEEEEecchhheeeeeeh-----hhhccceEEcCCCceEEE-ecCCC-----cEEEecccccc
Confidence 777788776 3655432 111112222233445554 54433 26788887765
No 128
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=56.72 E-value=1.9e+02 Score=27.83 Aligned_cols=60 Identities=15% Similarity=0.146 Sum_probs=33.2
Q ss_pred eEEEEcCCCcEEeeeecCCCCCCCCCCCCCcceeEEE---ECCeEEEEcccCCCCCCCcE--EEEECCCCcEEEeec
Q 013179 48 VVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVA---IDCHMFIFGGRFGSRRLGDF--WVLDTDIWQWSELTS 119 (448)
Q Consensus 48 ~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~---~~~~lyv~GG~~~~~~~~~~--~~~d~~t~~W~~~~~ 119 (448)
++.||.++++++.+..... .+ ..+... .++.||+..... .....+ +..+.++++.+.+..
T Consensus 17 ~~~~d~~~g~l~~~~~~~~------~~----~Ps~l~~~~~~~~LY~~~e~~--~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 17 VFRFDEETGTLTLVQTVAE------GE----NPSWLAVSPDGRRLYVVNEGS--GDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEEETTTTEEEEEEEEEE------SS----SECCEEE-TTSSEEEEEETTS--STTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCceEeeeecC------CC----CCceEEEEeCCCEEEEEEccc--cCCCCEEEEEECCCcceeEEeee
Confidence 5556779999988764321 11 122222 356788886543 122234 445555578888764
No 129
>PRK01742 tolB translocation protein TolB; Provisional
Probab=54.82 E-value=2.3e+02 Score=28.24 Aligned_cols=60 Identities=17% Similarity=0.104 Sum_probs=34.6
Q ss_pred CcEEEEECCCCcEEEeecCCCCCCcCcccEEEEECCcE-EEEEecCCCCccCCceEEEeCCCCceEeec
Q 013179 102 GDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRK-IVMYGGWDGKKWLSDVYVLDTISLEWMQLP 169 (448)
Q Consensus 102 ~~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~-iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~ 169 (448)
..++.+|+.+++-+.+.. .+.. ....+...+++ |++....++. .++|.+|+.+....++.
T Consensus 228 ~~i~i~dl~tg~~~~l~~---~~g~--~~~~~wSPDG~~La~~~~~~g~---~~Iy~~d~~~~~~~~lt 288 (429)
T PRK01742 228 SQLVVHDLRSGARKVVAS---FRGH--NGAPAFSPDGSRLAFASSKDGV---LNIYVMGANGGTPSQLT 288 (429)
T ss_pred cEEEEEeCCCCceEEEec---CCCc--cCceeECCCCCEEEEEEecCCc---EEEEEEECCCCCeEeec
Confidence 458999998887666653 2211 11222334444 4443323322 35899999888877764
No 130
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=52.17 E-value=2.6e+02 Score=28.10 Aligned_cols=190 Identities=12% Similarity=0.115 Sum_probs=93.1
Q ss_pred cEEEEEcCCCCCcccCceEEEEcCCCcEEeeeecCCCCCCCCCCCCCcceeEEEECCeEEEE--cccCCCCCCCcEEEEE
Q 013179 31 SKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIF--GGRFGSRRLGDFWVLD 108 (448)
Q Consensus 31 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~lyv~--GG~~~~~~~~~~~~~d 108 (448)
++||..--.++- ..++.-|+.-+.-++.+...+ +..--+.-+++-.|| || ++|.||
T Consensus 236 ~RvYFlsD~eG~---GnlYSvdldGkDlrrHTnFtd-----------YY~R~~nsDGkrIvFq~~G--------dIylyd 293 (668)
T COG4946 236 ERVYFLSDHEGV---GNLYSVDLDGKDLRRHTNFTD-----------YYPRNANSDGKRIVFQNAG--------DIYLYD 293 (668)
T ss_pred ceEEEEecccCc---cceEEeccCCchhhhcCCchh-----------ccccccCCCCcEEEEecCC--------cEEEeC
Confidence 677776654332 346666666555544432221 111122233433333 33 799999
Q ss_pred CCCCcEEEeecCCCCCCcCcccEE------------EEECCcEEEEEecCCCCccCCceEEEeCCCCceEeecCCCCCCC
Q 013179 109 TDIWQWSELTSFGDLPSPRDFAAA------------SAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPP 176 (448)
Q Consensus 109 ~~t~~W~~~~~~~~~p~~r~~~~~------------~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~ 176 (448)
|++..-+++.. ++|..|.--.. +++ ++..+++-. ....+.+++-.+--.++. ....
T Consensus 294 P~td~lekldI--~lpl~rk~k~~k~~~pskyledfa~~-~Gd~ia~VS------RGkaFi~~~~~~~~iqv~---~~~~ 361 (668)
T COG4946 294 PETDSLEKLDI--GLPLDRKKKQPKFVNPSKYLEDFAVV-NGDYIALVS------RGKAFIMRPWDGYSIQVG---KKGG 361 (668)
T ss_pred CCcCcceeeec--CCccccccccccccCHHHhhhhhccC-CCcEEEEEe------cCcEEEECCCCCeeEEcC---CCCc
Confidence 99999988875 44555422111 111 122222211 112445444333222232 1111
Q ss_pred ccCCceeEEeCCEEEEEcccCCCCCccCceeeecccccccCCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCCCCC
Q 013179 177 PRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTG 256 (448)
Q Consensus 177 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~~~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~~~~~i~v~GG~~~~ 256 (448)
-|+.+ ...+..-.++|-.++ +.+..||.++..-..+. .+..+...-.+.-+++..+.+-..
T Consensus 362 VrY~r--~~~~~e~~vigt~dg-----------D~l~iyd~~~~e~kr~e----~~lg~I~av~vs~dGK~~vvaNdr-- 422 (668)
T COG4946 362 VRYRR--IQVDPEGDVIGTNDG-----------DKLGIYDKDGGEVKRIE----KDLGNIEAVKVSPDGKKVVVANDR-- 422 (668)
T ss_pred eEEEE--EccCCcceEEeccCC-----------ceEEEEecCCceEEEee----CCccceEEEEEcCCCcEEEEEcCc--
Confidence 23322 222333666776554 33566788888777764 244444433333455655554211
Q ss_pred CCcccccceeCcEEEEEcCCCceEEec
Q 013179 257 GWLSRYDIYYNDTIILDRLSAQWKRLP 283 (448)
Q Consensus 257 ~~~~~~~~~~~~v~~yd~~~~~W~~~~ 283 (448)
-++|++|+++..-+.+.
T Consensus 423 ----------~el~vididngnv~~id 439 (668)
T COG4946 423 ----------FELWVIDIDNGNVRLID 439 (668)
T ss_pred ----------eEEEEEEecCCCeeEec
Confidence 36888888887766553
No 131
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=51.67 E-value=2.1e+02 Score=26.90 Aligned_cols=102 Identities=19% Similarity=0.143 Sum_probs=53.9
Q ss_pred cEEEEEcCCCCCcccCceEEEEcCCCcEEeeeecCCCCCCCCCCCCCcceeEEEECCeEEEEcccCCCCCCCcEEEEECC
Q 013179 31 SKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLDTD 110 (448)
Q Consensus 31 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~ 110 (448)
..-.++||.++ .+..||+.++.=..+....+ +..-..+ ......+|.||++. .+-..|+.
T Consensus 65 ~~~~~~G~~dg-----~vr~~Dln~~~~~~igth~~-------~i~ci~~---~~~~~~vIsgsWD~-----~ik~wD~R 124 (323)
T KOG1036|consen 65 ESTIVTGGLDG-----QVRRYDLNTGNEDQIGTHDE-------GIRCIEY---SYEVGCVISGSWDK-----TIKFWDPR 124 (323)
T ss_pred CceEEEeccCc-----eEEEEEecCCcceeeccCCC-------ceEEEEe---eccCCeEEEcccCc-----cEEEEecc
Confidence 44555666543 47789988887555542211 1111111 12345678888875 36677776
Q ss_pred CCcEEEeecCCCCCCcCcccEEEEECCcEEEEEecCCCCccCCceEEEeCCCCc
Q 013179 111 IWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLE 164 (448)
Q Consensus 111 t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~ 164 (448)
... .. +..-.+..-+++.+.++ +.|+|+.+. .+..||+.+..
T Consensus 125 ~~~---~~--~~~d~~kkVy~~~v~g~--~LvVg~~~r-----~v~iyDLRn~~ 166 (323)
T KOG1036|consen 125 NKV---VV--GTFDQGKKVYCMDVSGN--RLVVGTSDR-----KVLIYDLRNLD 166 (323)
T ss_pred ccc---cc--cccccCceEEEEeccCC--EEEEeecCc-----eEEEEEccccc
Confidence 511 11 11222334566666654 555665432 37788876543
No 132
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=48.89 E-value=2.4e+02 Score=26.70 Aligned_cols=120 Identities=16% Similarity=0.189 Sum_probs=70.6
Q ss_pred CceEEEEcCCC-----cEEeeeecCCCCCCCCCCCCCcceeEEEECCeEEEEcccCCCCCCCcEEEEECCCCc-EEEeec
Q 013179 46 SDVVVYDIDNK-----LWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQ-WSELTS 119 (448)
Q Consensus 46 ~~~~~yd~~~~-----~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~-W~~~~~ 119 (448)
..+..|++... +.+.+... ..+-.-.+++.++++|.+.-| +.+..|++...+ +.....
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~---------~~~g~V~ai~~~~~~lv~~~g-------~~l~v~~l~~~~~l~~~~~ 125 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHST---------EVKGPVTAICSFNGRLVVAVG-------NKLYVYDLDNSKTLLKKAF 125 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEE---------EESS-EEEEEEETTEEEEEET-------TEEEEEEEETTSSEEEEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEE---------eecCcceEhhhhCCEEEEeec-------CEEEEEEccCcccchhhhe
Confidence 56999999985 56655432 112235677778999766655 357888887777 877764
Q ss_pred CCCCCCcCcccEEEEECCcEEEEEecCCCCccCCc--eEEEeCCCCceEeecCCCCCCCccCCceeEEe-CCEEEEEcc
Q 013179 120 FGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSD--VYVLDTISLEWMQLPVTGSVPPPRCGHTATMV-EKRLLIYGG 195 (448)
Q Consensus 120 ~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~--v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG 195 (448)
...+-...+..+.++ .|++ |-. ..+ ++.|+.+..+-..++ .-..++.-.++..+ ++. .++++
T Consensus 126 ---~~~~~~i~sl~~~~~-~I~v-gD~-----~~sv~~~~~~~~~~~l~~va---~d~~~~~v~~~~~l~d~~-~~i~~ 190 (321)
T PF03178_consen 126 ---YDSPFYITSLSVFKN-YILV-GDA-----MKSVSLLRYDEENNKLILVA---RDYQPRWVTAAEFLVDED-TIIVG 190 (321)
T ss_dssp ---E-BSSSEEEEEEETT-EEEE-EES-----SSSEEEEEEETTTE-EEEEE---EESS-BEEEEEEEE-SSS-EEEEE
T ss_pred ---ecceEEEEEEecccc-EEEE-EEc-----ccCEEEEEEEccCCEEEEEE---ecCCCccEEEEEEecCCc-EEEEE
Confidence 434444455555655 5554 421 233 456677666677776 33456665566566 555 44444
No 133
>PRK10115 protease 2; Provisional
Probab=46.51 E-value=4e+02 Score=28.61 Aligned_cols=212 Identities=11% Similarity=0.051 Sum_probs=101.5
Q ss_pred CcEEEEEcCCCCCcccCceEEEEcCCCcEEeeeecCCCCCCCCCCCCCcceeEEEECCeEEEEcccCCC-CCCCcEEEEE
Q 013179 30 KSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGS-RRLGDFWVLD 108 (448)
Q Consensus 30 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~lyv~GG~~~~-~~~~~~~~~d 108 (448)
+++.++++--.++....++++.|+.++.. ++. ..+..+ ...+..-+++-+++...... ....++|+++
T Consensus 137 dg~~la~~~d~~G~E~~~l~v~d~~tg~~--l~~--------~i~~~~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 137 DNTIMALAEDFLSRRQYGIRFRNLETGNW--YPE--------LLDNVE-PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred CCCEEEEEecCCCcEEEEEEEEECCCCCC--CCc--------cccCcc-eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 45566666444444556778888877642 111 111222 22333334444444443322 2346799999
Q ss_pred CCCCcE--EEeecCCCCCCcCcccEEEEECCcEEEEEecCCCCccCCceEEEeC--CCCceEeecCCCCCCCccCCceeE
Q 013179 109 TDIWQW--SELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDT--ISLEWMQLPVTGSVPPPRCGHTAT 184 (448)
Q Consensus 109 ~~t~~W--~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~--~t~~W~~~~~~~~~p~~r~~~~~~ 184 (448)
+.|..- ..+-. -+............+++..++..... ..+.++.|+. .+..|..+. ..+.. ......
T Consensus 206 lgt~~~~d~lv~~---e~~~~~~~~~~~s~d~~~l~i~~~~~--~~~~~~l~~~~~~~~~~~~~~---~~~~~-~~~~~~ 276 (686)
T PRK10115 206 IGTPASQDELVYE---EKDDTFYVSLHKTTSKHYVVIHLASA--TTSEVLLLDAELADAEPFVFL---PRRKD-HEYSLD 276 (686)
T ss_pred CCCChhHCeEEEe---eCCCCEEEEEEEcCCCCEEEEEEECC--ccccEEEEECcCCCCCceEEE---ECCCC-CEEEEE
Confidence 988832 33332 11122222233333434333443333 2356888883 334443332 11111 112233
Q ss_pred EeCCEEEEEcccCCCCCccCceeeecccccccCC-CCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCCCCCCCccccc
Q 013179 185 MVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENE-TPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYD 263 (448)
Q Consensus 185 ~~~~~lyv~GG~~~~~~~~~d~~~~~~~~~yd~~-~~~W~~~~~~g~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~ 263 (448)
..++.+|+.--.+... . .+...++. +.+|+.+-.. ...+.--.+.+.++.|++..-..
T Consensus 277 ~~~~~ly~~tn~~~~~---~------~l~~~~~~~~~~~~~l~~~---~~~~~i~~~~~~~~~l~~~~~~~--------- 335 (686)
T PRK10115 277 HYQHRFYLRSNRHGKN---F------GLYRTRVRDEQQWEELIPP---RENIMLEGFTLFTDWLVVEERQR--------- 335 (686)
T ss_pred eCCCEEEEEEcCCCCC---c------eEEEecCCCcccCeEEECC---CCCCEEEEEEEECCEEEEEEEeC---------
Confidence 3467888877543222 1 12223444 5789887621 11222224445677777765322
Q ss_pred ceeCcEEEEEcCCCceEEec
Q 013179 264 IYYNDTIILDRLSAQWKRLP 283 (448)
Q Consensus 264 ~~~~~v~~yd~~~~~W~~~~ 283 (448)
-...++++|+.+.....+.
T Consensus 336 -g~~~l~~~~~~~~~~~~l~ 354 (686)
T PRK10115 336 -GLTSLRQINRKTREVIGIA 354 (686)
T ss_pred -CEEEEEEEcCCCCceEEec
Confidence 2345888887666655554
No 134
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=45.83 E-value=4.1e+02 Score=28.49 Aligned_cols=109 Identities=15% Similarity=0.200 Sum_probs=62.9
Q ss_pred CCcEEEEEcCCCCCcccCceEEEEcCCCcEEeeeecCCCCCCCCCCCCCcceeEEEE--CCeEEEEcccCCCCCCCcEEE
Q 013179 29 GKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI--DCHMFIFGGRFGSRRLGDFWV 106 (448)
Q Consensus 29 ~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~--~~~lyv~GG~~~~~~~~~~~~ 106 (448)
.++.+++.|+-+++ |-+||..++- ++.+. ...-++++++.+ .++..+-.-.++ .+-.
T Consensus 360 pDgq~iaTG~eDgK-----VKvWn~~Sgf--C~vTF---------teHts~Vt~v~f~~~g~~llssSLDG-----tVRA 418 (893)
T KOG0291|consen 360 PDGQLIATGAEDGK-----VKVWNTQSGF--CFVTF---------TEHTSGVTAVQFTARGNVLLSSSLDG-----TVRA 418 (893)
T ss_pred CCCcEEEeccCCCc-----EEEEeccCce--EEEEe---------ccCCCceEEEEEEecCCEEEEeecCC-----eEEe
Confidence 56778888886544 7778887763 23222 223345555543 455545443333 3666
Q ss_pred EECCCCc-EEEeecCCCCCCcCcccEEEEECCcEEEEEecCCCCccCCceEEEeCCCCceE
Q 013179 107 LDTDIWQ-WSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWM 166 (448)
Q Consensus 107 ~d~~t~~-W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~ 166 (448)
+|+...+ .+... .|.++...+.++...|.|.+.|+.+.. ++++++.+|++-.
T Consensus 419 wDlkRYrNfRTft----~P~p~QfscvavD~sGelV~AG~~d~F----~IfvWS~qTGqll 471 (893)
T KOG0291|consen 419 WDLKRYRNFRTFT----SPEPIQFSCVAVDPSGELVCAGAQDSF----EIFVWSVQTGQLL 471 (893)
T ss_pred eeecccceeeeec----CCCceeeeEEEEcCCCCEEEeeccceE----EEEEEEeecCeee
Confidence 6765443 22222 677777666666556789999986543 2556666655443
No 135
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=45.67 E-value=31 Score=19.85 Aligned_cols=18 Identities=17% Similarity=0.298 Sum_probs=14.1
Q ss_pred CCcEEEEECCcEEEEEcC
Q 013179 21 SGHSAVNIGKSKVVVFGG 38 (448)
Q Consensus 21 ~~~~~~~~~~~~iyv~GG 38 (448)
..|++++..++.+|.+|-
T Consensus 8 ~~ht~al~~~g~v~~wG~ 25 (30)
T PF13540_consen 8 GYHTCALTSDGEVYCWGD 25 (30)
T ss_dssp SSEEEEEE-TTEEEEEE-
T ss_pred CCEEEEEEcCCCEEEEcC
Confidence 568888888899999994
No 136
>smart00284 OLF Olfactomedin-like domains.
Probab=45.62 E-value=2.5e+02 Score=25.91 Aligned_cols=167 Identities=9% Similarity=-0.048 Sum_probs=75.5
Q ss_pred CCCCCCCcEEEEECCcEEEEEcCCCCCcccCceEEEEcCCCcEEeeeecCCCCCCCCCCCCCcc---eeEEEECCeEEEE
Q 013179 16 VPQPRSGHSAVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAF---HIAVAIDCHMFIF 92 (448)
Q Consensus 16 ~P~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~---h~~~~~~~~lyv~ 92 (448)
+|.+=.|...++.+ |.+|.- ......+..||+.+.+-......+...-....|-...+ --.++..+-|+|+
T Consensus 70 Lp~~~~GtG~VVYn-gslYY~-----~~~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvI 143 (255)
T smart00284 70 LPHAGQGTGVVVYN-GSLYFN-----KFNSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVI 143 (255)
T ss_pred CCCccccccEEEEC-ceEEEE-----ecCCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEE
Confidence 44444454555555 455542 22346799999999975432211100000001111111 1123334445444
Q ss_pred cccCCCCCCCcEEEEECCCCcEEEeecCCCCCCcCcccEEEEECCcEEEEEecCCCCccCCceEEEeCCCCceEeecCCC
Q 013179 93 GGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTG 172 (448)
Q Consensus 93 GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~ 172 (448)
=......-.-.+-++||.+-+-.+.=.+ ..|....+-+-.++ |.||++-.... ....-.+.||+.+++=+.+. -
T Consensus 144 Yat~~~~g~ivvSkLnp~tL~ve~tW~T-~~~k~sa~naFmvC--GvLY~~~s~~~-~~~~I~yayDt~t~~~~~~~--i 217 (255)
T smart00284 144 YATEQNAGKIVISKLNPATLTIENTWIT-TYNKRSASNAFMIC--GILYVTRSLGS-KGEKVFYAYDTNTGKEGHLD--I 217 (255)
T ss_pred EeccCCCCCEEEEeeCcccceEEEEEEc-CCCcccccccEEEe--eEEEEEccCCC-CCcEEEEEEECCCCccceee--e
Confidence 1111111111234567765543322111 24555555544555 38999853111 11223688999987644432 1
Q ss_pred CCCCccCCceeEEe---CCEEEEEc
Q 013179 173 SVPPPRCGHTATMV---EKRLLIYG 194 (448)
Q Consensus 173 ~~p~~r~~~~~~~~---~~~lyv~G 194 (448)
+.+.+-..+++.-. +.+||+.-
T Consensus 218 ~f~n~y~~~s~l~YNP~d~~LY~wd 242 (255)
T smart00284 218 PFENMYEYISMLDYNPNDRKLYAWN 242 (255)
T ss_pred eeccccccceeceeCCCCCeEEEEe
Confidence 23333344444444 56888864
No 137
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=44.71 E-value=3e+02 Score=26.63 Aligned_cols=108 Identities=19% Similarity=0.231 Sum_probs=59.9
Q ss_pred CcEEEEEcCCCCCcccCceEEEEcCCCcEEeeeecCCCCCCCCCCCCCcceeEEEECCeEEEEcccCCCCCCCcEEEEEC
Q 013179 30 KSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLDT 109 (448)
Q Consensus 30 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~~d~ 109 (448)
+..+.+.||-++. -+.++..++.|-..- . ...--.-.+.+..++.+..-|++.+. +.++..
T Consensus 75 ~~~l~aTGGgDD~-----AflW~~~~ge~~~el-t--------gHKDSVt~~~FshdgtlLATGdmsG~-----v~v~~~ 135 (399)
T KOG0296|consen 75 NNNLVATGGGDDL-----AFLWDISTGEFAGEL-T--------GHKDSVTCCSFSHDGTLLATGDMSGK-----VLVFKV 135 (399)
T ss_pred CCceEEecCCCce-----EEEEEccCCcceeEe-c--------CCCCceEEEEEccCceEEEecCCCcc-----EEEEEc
Confidence 5678888986543 567888888863321 1 12222234455668888888988764 444444
Q ss_pred CC--CcEEEeecCCCCCCcCcccEEEEECCcEEEEEecCCCCccCCceEEEeCCCCceEe
Q 013179 110 DI--WQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQ 167 (448)
Q Consensus 110 ~t--~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~ 167 (448)
.+ .+|....+..++---+.+ ....|+++|-.++ .+|+|...+..-.+
T Consensus 136 stg~~~~~~~~e~~dieWl~WH------p~a~illAG~~DG-----svWmw~ip~~~~~k 184 (399)
T KOG0296|consen 136 STGGEQWKLDQEVEDIEWLKWH------PRAHILLAGSTDG-----SVWMWQIPSQALCK 184 (399)
T ss_pred ccCceEEEeecccCceEEEEec------ccccEEEeecCCC-----cEEEEECCCcceee
Confidence 33 456554322222111221 1235677765443 37888887754333
No 138
>PTZ00421 coronin; Provisional
Probab=43.20 E-value=3.8e+02 Score=27.42 Aligned_cols=63 Identities=11% Similarity=0.060 Sum_probs=34.1
Q ss_pred EEEEEcCCCCCcccCceEEEEcCCCcEEeeeecCCCCCCCCCCCCCcceeEEEECCeEEEEcccCCCCCCCcEEEEECCC
Q 013179 32 KVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLDTDI 111 (448)
Q Consensus 32 ~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t 111 (448)
.+++.||.++ .+.++|+.+++-... .. ............-++.+++.|+.++ .+..||+.+
T Consensus 139 ~iLaSgs~Dg-----tVrIWDl~tg~~~~~--l~-------~h~~~V~sla~spdG~lLatgs~Dg-----~IrIwD~rs 199 (493)
T PTZ00421 139 NVLASAGADM-----VVNVWDVERGKAVEV--IK-------CHSDQITSLEWNLDGSLLCTTSKDK-----KLNIIDPRD 199 (493)
T ss_pred CEEEEEeCCC-----EEEEEECCCCeEEEE--Ec-------CCCCceEEEEEECCCCEEEEecCCC-----EEEEEECCC
Confidence 4666666543 377788877642211 10 0111122222233667777777553 478899987
Q ss_pred Cc
Q 013179 112 WQ 113 (448)
Q Consensus 112 ~~ 113 (448)
++
T Consensus 200 g~ 201 (493)
T PTZ00421 200 GT 201 (493)
T ss_pred Cc
Confidence 65
No 139
>PLN00181 protein SPA1-RELATED; Provisional
Probab=42.55 E-value=4.9e+02 Score=28.44 Aligned_cols=62 Identities=13% Similarity=0.097 Sum_probs=33.7
Q ss_pred CCeEEEEcccCCCCCCCcEEEEECCCCcEEEeecCCCCCCcCcccEEEEE--CCcEEEEEecCCCCccCCceEEEeCCCC
Q 013179 86 DCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAI--GNRKIVMYGGWDGKKWLSDVYVLDTISL 163 (448)
Q Consensus 86 ~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~t~ 163 (448)
++.+++.|+.++ .+..+|+.+..-...-. . .....++.. .++.+++.|+.++ .+..||+.+.
T Consensus 587 ~~~~L~Sgs~Dg-----~v~iWd~~~~~~~~~~~---~---~~~v~~v~~~~~~g~~latgs~dg-----~I~iwD~~~~ 650 (793)
T PLN00181 587 DPTLLASGSDDG-----SVKLWSINQGVSIGTIK---T---KANICCVQFPSESGRSLAFGSADH-----KVYYYDLRNP 650 (793)
T ss_pred CCCEEEEEcCCC-----EEEEEECCCCcEEEEEe---c---CCCeEEEEEeCCCCCEEEEEeCCC-----eEEEEECCCC
Confidence 456777777553 37888887654322110 1 111112222 3457777777544 4788988654
No 140
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=42.36 E-value=4.1e+02 Score=29.01 Aligned_cols=29 Identities=10% Similarity=0.085 Sum_probs=19.1
Q ss_pred ECCcEEEEEcCCCCCcccCceEEEEcCCCc--EEeee
Q 013179 28 IGKSKVVVFGGLVDKRFLSDVVVYDIDNKL--WFQPE 62 (448)
Q Consensus 28 ~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~ 62 (448)
+-+++||+.... +.++.+|.++++ |+.-+
T Consensus 192 vvgg~lYv~t~~------~~V~ALDa~TGk~lW~~d~ 222 (764)
T TIGR03074 192 KVGDTLYLCTPH------NKVIALDAATGKEKWKFDP 222 (764)
T ss_pred EECCEEEEECCC------CeEEEEECCCCcEEEEEcC
Confidence 334889987542 458888888764 76543
No 141
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=40.46 E-value=3.7e+02 Score=27.82 Aligned_cols=122 Identities=15% Similarity=0.115 Sum_probs=61.9
Q ss_pred CCCCCcEEEEECCcE-EEEEcCCCCCcccCceEEEEcCCCcEEeeeecCCCCCCCCCCCCCcceeEEEECCeEEEEcccC
Q 013179 18 QPRSGHSAVNIGKSK-VVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRF 96 (448)
Q Consensus 18 ~~R~~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~lyv~GG~~ 96 (448)
-|+.|--++...-.. ||+.|- -++||+++++.++|-..-.. ..+-..+..+.--+.|+.+||.+
T Consensus 132 IP~~GRDm~y~~~scDly~~gs------g~evYRlNLEqGrfL~P~~~---------~~~~lN~v~in~~hgLla~Gt~~ 196 (703)
T KOG2321|consen 132 IPKFGRDMKYHKPSCDLYLVGS------GSEVYRLNLEQGRFLNPFET---------DSGELNVVSINEEHGLLACGTED 196 (703)
T ss_pred cCcCCccccccCCCccEEEeec------CcceEEEEcccccccccccc---------ccccceeeeecCccceEEecccC
Confidence 456666666643233 555543 26799999999998432111 11222222222235789999866
Q ss_pred CCCCCCcEEEEECCCCcE-EEeecCC---CCCCcCcc--cEEEEECC-cEEEEEecCCCCccCCceEEEeCCCCc
Q 013179 97 GSRRLGDFWVLDTDIWQW-SELTSFG---DLPSPRDF--AAASAIGN-RKIVMYGGWDGKKWLSDVYVLDTISLE 164 (448)
Q Consensus 97 ~~~~~~~~~~~d~~t~~W-~~~~~~~---~~p~~r~~--~~~~~~~~-~~iyv~GG~~~~~~~~~v~~yd~~t~~ 164 (448)
+ .+..+|+.+..- ..+.... +.|..-.. -++..+.+ +--+.+|-.. ..+++||+.+.+
T Consensus 197 g-----~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~-----G~v~iyDLRa~~ 261 (703)
T KOG2321|consen 197 G-----VVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTST-----GSVLIYDLRASK 261 (703)
T ss_pred c-----eEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccC-----CcEEEEEcccCC
Confidence 4 377777765432 1111111 12222222 22333444 4344444332 248899987654
No 142
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=38.83 E-value=3.1e+02 Score=25.02 Aligned_cols=178 Identities=12% Similarity=0.051 Sum_probs=91.6
Q ss_pred CceEEEEcCCCcEEeeeecCCCCCCCCCCCCCcceeEEEECC--eEEEEcccCCCCCCCcEEEEECCCCcEEEeecCCCC
Q 013179 46 SDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDC--HMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDL 123 (448)
Q Consensus 46 ~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~--~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~ 123 (448)
..+.++|..+++--+-- ....+ .-.++.+++ .+.+-|+++ +.+..+|..++.-+++.. +
T Consensus 81 k~v~vwDV~TGkv~Rr~---------rgH~a--qVNtV~fNeesSVv~SgsfD-----~s~r~wDCRS~s~ePiQi---l 141 (307)
T KOG0316|consen 81 KAVQVWDVNTGKVDRRF---------RGHLA--QVNTVRFNEESSVVASGSFD-----SSVRLWDCRSRSFEPIQI---L 141 (307)
T ss_pred ceEEEEEcccCeeeeec---------ccccc--eeeEEEecCcceEEEecccc-----ceeEEEEcccCCCCccch---h
Confidence 35889999998632210 01111 122334443 455556544 458889999998888874 6
Q ss_pred CCcCcccEEEEECCcEEEEEecCCCCccCCceEEEeCCCCceEeecCCCCCCCccCCceeEEeCCEEEEEcccCCCCCcc
Q 013179 124 PSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIM 203 (448)
Q Consensus 124 p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~ 203 (448)
...+..-.++.+.+ ...|.|-.++. +-.||...++-..- -+..|.. .....-++...++|-.++.
T Consensus 142 dea~D~V~Si~v~~-heIvaGS~DGt-----vRtydiR~G~l~sD----y~g~pit-~vs~s~d~nc~La~~l~st---- 206 (307)
T KOG0316|consen 142 DEAKDGVSSIDVAE-HEIVAGSVDGT-----VRTYDIRKGTLSSD----YFGHPIT-SVSFSKDGNCSLASSLDST---- 206 (307)
T ss_pred hhhcCceeEEEecc-cEEEeeccCCc-----EEEEEeecceeehh----hcCCcce-eEEecCCCCEEEEeeccce----
Confidence 66777777777754 55555544443 66788765543211 1111111 1111124455555544321
Q ss_pred CceeeecccccccCCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCCCCCCCcccccceeCcEEEEEcCCCc
Q 013179 204 GDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQ 278 (448)
Q Consensus 204 ~d~~~~~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~ 278 (448)
+...|.+|.+--+.- .| ....-+.--+++.+..-.|++|..+ ..+|.||+...+
T Consensus 207 --------lrLlDk~tGklL~sY-kG-hkn~eykldc~l~qsdthV~sgSED-----------G~Vy~wdLvd~~ 260 (307)
T KOG0316|consen 207 --------LRLLDKETGKLLKSY-KG-HKNMEYKLDCCLNQSDTHVFSGSED-----------GKVYFWDLVDET 260 (307)
T ss_pred --------eeecccchhHHHHHh-cc-cccceeeeeeeecccceeEEeccCC-----------ceEEEEEeccce
Confidence 112244444332111 11 1111222245556667788888655 358899986554
No 143
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=38.75 E-value=3.6e+02 Score=27.87 Aligned_cols=64 Identities=17% Similarity=0.139 Sum_probs=34.0
Q ss_pred cCcccEEEEE-CCcEEEEEecCCCCccCCceEEEeCCCCceEeecCCCCCCCccCCceeEEeCCEEEEEcccCC
Q 013179 126 PRDFAAASAI-GNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGG 198 (448)
Q Consensus 126 ~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~ 198 (448)
|+++.-++.- .+-.||+.|- -++||++|++.+.|-.-- ....+-..+....-...|+.+||..+
T Consensus 133 P~~GRDm~y~~~scDly~~gs------g~evYRlNLEqGrfL~P~---~~~~~~lN~v~in~~hgLla~Gt~~g 197 (703)
T KOG2321|consen 133 PKFGRDMKYHKPSCDLYLVGS------GSEVYRLNLEQGRFLNPF---ETDSGELNVVSINEEHGLLACGTEDG 197 (703)
T ss_pred CcCCccccccCCCccEEEeec------CcceEEEEcccccccccc---ccccccceeeeecCccceEEecccCc
Confidence 3444444432 2235777653 357999999999986431 11111111212222467888998653
No 144
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=37.05 E-value=5.2e+02 Score=27.19 Aligned_cols=87 Identities=21% Similarity=0.276 Sum_probs=46.4
Q ss_pred CCCCccCCceeEEe---CCEEEEEcccCCCCCccCceeeecccccccCCCCceEEecCCC-C-CCCCCceeEEEEeCCEE
Q 013179 173 SVPPPRCGHTATMV---EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPG-Q-APSSRCGHTITSGGHYL 247 (448)
Q Consensus 173 ~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~d~~~~~~~~~yd~~~~~W~~~~~~g-~-~p~~r~~~~~~~~~~~i 247 (448)
.+|..+...+.... ++++++.. .+ ...++.++.++.+-..+..-. + .-.+.+.-.....++.|
T Consensus 423 ~~~~~~~~a~~i~ftid~~k~~~~s-~~-----------~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yi 490 (691)
T KOG2048|consen 423 DVPLALLDASAISFTIDKNKLFLVS-KN-----------IFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYI 490 (691)
T ss_pred cchhhhccceeeEEEecCceEEEEe-cc-----------cceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEE
Confidence 55665544444333 56777665 11 123444566666655543110 1 11111111222367788
Q ss_pred EEEcCCCCCCCcccccceeCcEEEEEcCCCceEEecc
Q 013179 248 LLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPI 284 (448)
Q Consensus 248 ~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~ 284 (448)
.++++. ..+++||+++.+-..+..
T Consensus 491 aa~~t~-------------g~I~v~nl~~~~~~~l~~ 514 (691)
T KOG2048|consen 491 AAISTR-------------GQIFVYNLETLESHLLKV 514 (691)
T ss_pred EEEecc-------------ceEEEEEcccceeecchh
Confidence 888854 359999999988777653
No 145
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=35.96 E-value=2.2e+02 Score=27.38 Aligned_cols=77 Identities=21% Similarity=0.282 Sum_probs=49.0
Q ss_pred CCCCceeEEEEeCCEEEEEcCCCCCCCcccccceeCcEEEEEcCCCceEEeccCCCCCCCccceEEEEECCEEEEEccCC
Q 013179 232 PSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPIGNEPPPARAYHSMTCLGSLYLLFGGFD 311 (448)
Q Consensus 232 p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~i~v~GG~~ 311 (448)
..-+.+-++..++++++|-|-.+ +.+-.+|++...--++-..-. . ---++-.+++=+|-||++
T Consensus 357 ~gHkRGIAClQYr~rlvVSGSSD------------ntIRlwdi~~G~cLRvLeGHE-e----LvRciRFd~krIVSGaYD 419 (499)
T KOG0281|consen 357 NGHKRGIACLQYRDRLVVSGSSD------------NTIRLWDIECGACLRVLEGHE-E----LVRCIRFDNKRIVSGAYD 419 (499)
T ss_pred hcccccceehhccCeEEEecCCC------------ceEEEEeccccHHHHHHhchH-H----hhhheeecCceeeecccc
Confidence 34455667777999999887433 568888988776544322111 0 112456788899999999
Q ss_pred CCCccCceEEecCCCCc
Q 013179 312 GKSTFGDIWWLVPEEDP 328 (448)
Q Consensus 312 ~~~~~~d~w~~~~~yd~ 328 (448)
++- .+|.+....||
T Consensus 420 Gki---kvWdl~aaldp 433 (499)
T KOG0281|consen 420 GKI---KVWDLQAALDP 433 (499)
T ss_pred ceE---EEEecccccCC
Confidence 863 35656655554
No 146
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=35.44 E-value=4.2e+02 Score=25.65 Aligned_cols=111 Identities=18% Similarity=0.244 Sum_probs=61.5
Q ss_pred EECCcEEEEEcCCCCCcccCceEEEEcCCCc--EEeeeecCCCCCCCCCCCCCcceeEEEECCeEEEEcccCCCCCCCcE
Q 013179 27 NIGKSKVVVFGGLVDKRFLSDVVVYDIDNKL--WFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDF 104 (448)
Q Consensus 27 ~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~ 104 (448)
+..++++|+.- .+ ..++.+|+.+.+ |+...... ......-....+++||+-. .++ .+
T Consensus 65 ~~~dg~v~~~~-~~-----G~i~A~d~~~g~~~W~~~~~~~---------~~~~~~~~~~~~G~i~~g~-~~g-----~~ 123 (370)
T COG1520 65 ADGDGTVYVGT-RD-----GNIFALNPDTGLVKWSYPLLGA---------VAQLSGPILGSDGKIYVGS-WDG-----KL 123 (370)
T ss_pred EeeCCeEEEec-CC-----CcEEEEeCCCCcEEecccCcCc---------ceeccCceEEeCCeEEEec-ccc-----eE
Confidence 55668888861 11 169999999887 86543210 0011111122266765543 333 69
Q ss_pred EEEECCCC--cEEEeecCCCCCCcCcccEEEEECCcEEEEEecCCCCccCCceEEEeCCC--CceEeec
Q 013179 105 WVLDTDIW--QWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTIS--LEWMQLP 169 (448)
Q Consensus 105 ~~~d~~t~--~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t--~~W~~~~ 169 (448)
++||..++ .|+.-... . .+. ...+++.++.+|+.- ....++.+|..+ ..|+.-.
T Consensus 124 y~ld~~~G~~~W~~~~~~---~-~~~-~~~~v~~~~~v~~~s------~~g~~~al~~~tG~~~W~~~~ 181 (370)
T COG1520 124 YALDASTGTLVWSRNVGG---S-PYY-ASPPVVGDGTVYVGT------DDGHLYALNADTGTLKWTYET 181 (370)
T ss_pred EEEECCCCcEEEEEecCC---C-eEE-ecCcEEcCcEEEEec------CCCeEEEEEccCCcEEEEEec
Confidence 99999654 58776541 1 222 233444565777653 124588888775 4487544
No 147
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=33.66 E-value=3.3e+02 Score=26.26 Aligned_cols=72 Identities=14% Similarity=0.007 Sum_probs=40.5
Q ss_pred cEEEEEcCCC----CCcccCceEEEEcCCCc--EEeeeecCCCCCCCCCCC-CCcce------eEEE-ECCeEEEEcccC
Q 013179 31 SKVVVFGGLV----DKRFLSDVVVYDIDNKL--WFQPECTGNGSNGQVGPG-PRAFH------IAVA-IDCHMFIFGGRF 96 (448)
Q Consensus 31 ~~iyv~GG~~----~~~~~~~~~~yd~~~~~--W~~~~~~~~~~~~~~~p~-~R~~h------~~~~-~~~~lyv~GG~~ 96 (448)
..+|+..-+- .+.+.+-+..||..+-+ ++.. +|. +|... .+.. .+..+||+-=
T Consensus 48 k~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~-----------iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~-- 114 (342)
T PF06433_consen 48 KTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIE-----------IPPKPRAQVVPYKNMFALSADGKFLYVQNF-- 114 (342)
T ss_dssp SEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEE-----------ETTS-B--BS--GGGEEE-TTSSEEEEEEE--
T ss_pred CEEEEEEEEEeccccccceeEEEEEecCcCcccceEe-----------cCCcchheecccccceEEccCCcEEEEEcc--
Confidence 4466555431 24566778999999984 4332 233 35432 2222 2446777732
Q ss_pred CCCCCCcEEEEECCCCcEEEe
Q 013179 97 GSRRLGDFWVLDTDIWQWSEL 117 (448)
Q Consensus 97 ~~~~~~~~~~~d~~t~~W~~~ 117 (448)
.+...+-+-|++.++-..-
T Consensus 115 --TPa~SVtVVDl~~~kvv~e 133 (342)
T PF06433_consen 115 --TPATSVTVVDLAAKKVVGE 133 (342)
T ss_dssp --SSSEEEEEEETTTTEEEEE
T ss_pred --CCCCeEEEEECCCCceeee
Confidence 4456788999988886443
No 148
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=32.03 E-value=5.3e+02 Score=25.72 Aligned_cols=118 Identities=13% Similarity=0.109 Sum_probs=57.7
Q ss_pred EEEEECCcEEEEEcCCCCCcccCceEEEEcCCCcEEeeeecCCCCCCCCCCCCCcceeEEEECCeEEEEcccCCCCCCCc
Q 013179 24 SAVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGD 103 (448)
Q Consensus 24 ~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~lyv~GG~~~~~~~~~ 103 (448)
++.+..+|-|+..|-.+ ..+-+||+.+.. .++.. ++..+....-.+.-|++-.+.+ .+.. .
T Consensus 352 s~~fHpDgLifgtgt~d-----~~vkiwdlks~~--~~a~F-------pght~~vk~i~FsENGY~Lat~-add~----~ 412 (506)
T KOG0289|consen 352 SAAFHPDGLIFGTGTPD-----GVVKIWDLKSQT--NVAKF-------PGHTGPVKAISFSENGYWLATA-ADDG----S 412 (506)
T ss_pred EeeEcCCceEEeccCCC-----ceEEEEEcCCcc--ccccC-------CCCCCceeEEEeccCceEEEEE-ecCC----e
Confidence 33444555555544432 347888888876 33222 1122222222222344433333 2221 2
Q ss_pred EEEEECCCCc-EEEeecCCCCCCcCcccEEEEECCcEEEEEecCCCCccCCceEEEeCCCCceEeec
Q 013179 104 FWVLDTDIWQ-WSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLP 169 (448)
Q Consensus 104 ~~~~d~~t~~-W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~ 169 (448)
+..+|+...+ ...+. ++......+......+...+++|.+ -.+|.|+-.+..|+++.
T Consensus 413 V~lwDLRKl~n~kt~~----l~~~~~v~s~~fD~SGt~L~~~g~~-----l~Vy~~~k~~k~W~~~~ 470 (506)
T KOG0289|consen 413 VKLWDLRKLKNFKTIQ----LDEKKEVNSLSFDQSGTYLGIAGSD-----LQVYICKKKTKSWTEIK 470 (506)
T ss_pred EEEEEehhhcccceee----ccccccceeEEEcCCCCeEEeecce-----eEEEEEecccccceeee
Confidence 7788886554 11211 3333222222333445666666522 23788888899999997
No 149
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=31.87 E-value=5.3e+02 Score=25.70 Aligned_cols=125 Identities=13% Similarity=0.116 Sum_probs=59.7
Q ss_pred cCcccEEEEECCcEEEEEecCCCCccCCceEEEeCCCCceEeecCCCCCCCccCCceeEEe-CCEEEEEcccCCCCCccC
Q 013179 126 PRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMV-EKRLLIYGGRGGGGPIMG 204 (448)
Q Consensus 126 ~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~ 204 (448)
....++++...|+-||..|-.++ .+-+||+.+.. .++ ..|..-.--.+..+ +|--|+.-+.+...
T Consensus 347 ~v~~ts~~fHpDgLifgtgt~d~-----~vkiwdlks~~--~~a---~Fpght~~vk~i~FsENGY~Lat~add~~---- 412 (506)
T KOG0289|consen 347 DVEYTSAAFHPDGLIFGTGTPDG-----VVKIWDLKSQT--NVA---KFPGHTGPVKAISFSENGYWLATAADDGS---- 412 (506)
T ss_pred cceeEEeeEcCCceEEeccCCCc-----eEEEEEcCCcc--ccc---cCCCCCCceeEEEeccCceEEEEEecCCe----
Confidence 34456666667777776664332 36778887766 333 33331111112222 44444444443322
Q ss_pred ceeeecccccccCCCCc-eEEecCCCCCCCCCceeEEEE-eCCEEEEEcCCCCCCCcccccceeCcEEEEEcCCCceEEe
Q 013179 205 DLWALKGLIEEENETPG-WTQLKLPGQAPSSRCGHTITS-GGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRL 282 (448)
Q Consensus 205 d~~~~~~~~~yd~~~~~-W~~~~~~g~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 282 (448)
+..+|+...+ ...+. .+....--+... ..+..++++|.+ -.||.|+-.++.|+++
T Consensus 413 -------V~lwDLRKl~n~kt~~----l~~~~~v~s~~fD~SGt~L~~~g~~------------l~Vy~~~k~~k~W~~~ 469 (506)
T KOG0289|consen 413 -------VKLWDLRKLKNFKTIQ----LDEKKEVNSLSFDQSGTYLGIAGSD------------LQVYICKKKTKSWTEI 469 (506)
T ss_pred -------EEEEEehhhcccceee----ccccccceeEEEcCCCCeEEeecce------------eEEEEEecccccceee
Confidence 2233433222 12222 111111112222 234566666532 2477788889999999
Q ss_pred ccCCC
Q 013179 283 PIGNE 287 (448)
Q Consensus 283 ~~~~~ 287 (448)
.....
T Consensus 470 ~~~~~ 474 (506)
T KOG0289|consen 470 KELAD 474 (506)
T ss_pred ehhhh
Confidence 77643
No 150
>PRK01742 tolB translocation protein TolB; Provisional
Probab=31.66 E-value=5.3e+02 Score=25.64 Aligned_cols=102 Identities=18% Similarity=0.092 Sum_probs=51.1
Q ss_pred CceEEEEcCCCcEEeeeecCCCCCCCCCCCCCcceeEEEECCe-EEEEcccCCCCCCCcEEEEECCCCcEEEeecCCCCC
Q 013179 46 SDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCH-MFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLP 124 (448)
Q Consensus 46 ~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~-lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~p 124 (448)
..++.+|+.+++-+.+... +. ........-+++ |++.....+. .++|.+|+.+....++.. .+
T Consensus 228 ~~i~i~dl~tg~~~~l~~~---------~g-~~~~~~wSPDG~~La~~~~~~g~---~~Iy~~d~~~~~~~~lt~---~~ 291 (429)
T PRK01742 228 SQLVVHDLRSGARKVVASF---------RG-HNGAPAFSPDGSRLAFASSKDGV---LNIYVMGANGGTPSQLTS---GA 291 (429)
T ss_pred cEEEEEeCCCCceEEEecC---------CC-ccCceeECCCCCEEEEEEecCCc---EEEEEEECCCCCeEeecc---CC
Confidence 4589999988776555422 11 111222333444 4443322222 358999998888777653 11
Q ss_pred CcCcccEEEEECCcE-EEEEecCCCCccCCceEEEeCCCCceEee
Q 013179 125 SPRDFAAASAIGNRK-IVMYGGWDGKKWLSDVYVLDTISLEWMQL 168 (448)
Q Consensus 125 ~~r~~~~~~~~~~~~-iyv~GG~~~~~~~~~v~~yd~~t~~W~~~ 168 (448)
. .....+...+++ |++.....+ ...+|.++.....-+.+
T Consensus 292 ~--~~~~~~wSpDG~~i~f~s~~~g---~~~I~~~~~~~~~~~~l 331 (429)
T PRK01742 292 G--NNTEPSWSPDGQSILFTSDRSG---SPQVYRMSASGGGASLV 331 (429)
T ss_pred C--CcCCEEECCCCCEEEEEECCCC---CceEEEEECCCCCeEEe
Confidence 1 112222233444 554433322 23678887766544333
No 151
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=31.57 E-value=84 Score=19.14 Aligned_cols=26 Identities=15% Similarity=0.190 Sum_probs=16.3
Q ss_pred eEEEEeCCEEEEEcCCCCCCCcccccceeCcEEEEEcCC
Q 013179 238 HTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLS 276 (448)
Q Consensus 238 ~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~ 276 (448)
.+.++.++.+|+.+.. ..++++|+++
T Consensus 15 ~~~~v~~g~vyv~~~d-------------g~l~ald~~t 40 (40)
T PF13570_consen 15 SSPAVAGGRVYVGTGD-------------GNLYALDAAT 40 (40)
T ss_dssp S--EECTSEEEEE-TT-------------SEEEEEETT-
T ss_pred cCCEEECCEEEEEcCC-------------CEEEEEeCCC
Confidence 3557788888887652 3689998764
No 152
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=30.20 E-value=5.7e+02 Score=25.59 Aligned_cols=208 Identities=16% Similarity=0.154 Sum_probs=94.5
Q ss_pred cEEEEECCcEEEEEcCCCCCcccCceEEEEcCCCcEEeeeecCCCCCCCCCCCCCcceeEEE---ECCeEEEEcccCCCC
Q 013179 23 HSAVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVA---IDCHMFIFGGRFGSR 99 (448)
Q Consensus 23 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~---~~~~lyv~GG~~~~~ 99 (448)
|+.+..+.| .|++||. ...++|++.+.++.--.. ..+.+...++. .++..++-||.++.
T Consensus 85 ~al~s~n~G-~~l~ag~----i~g~lYlWelssG~LL~v------------~~aHYQ~ITcL~fs~dgs~iiTgskDg~- 146 (476)
T KOG0646|consen 85 HALASSNLG-YFLLAGT----ISGNLYLWELSSGILLNV------------LSAHYQSITCLKFSDDGSHIITGSKDGA- 146 (476)
T ss_pred eeeecCCCc-eEEEeec----ccCcEEEEEeccccHHHH------------HHhhccceeEEEEeCCCcEEEecCCCcc-
Confidence 444444544 5666662 234588888888853111 12233333332 36777888886652
Q ss_pred CCCcEEEEECCCCcEEEeecCCC-CCCcC---cccEEEEECCcEEEE-EecCCCCc----cCCceEEEeCCCCceEeecC
Q 013179 100 RLGDFWVLDTDIWQWSELTSFGD-LPSPR---DFAAASAIGNRKIVM-YGGWDGKK----WLSDVYVLDTISLEWMQLPV 170 (448)
Q Consensus 100 ~~~~~~~~d~~t~~W~~~~~~~~-~p~~r---~~~~~~~~~~~~iyv-~GG~~~~~----~~~~v~~yd~~t~~W~~~~~ 170 (448)
+.++.+.+- +....+ .|.|+ ..|+..+. .+++ +||.+..- .-..+-.||+..+.-- .
T Consensus 147 ----V~vW~l~~l----v~a~~~~~~~p~~~f~~HtlsIT---Dl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LL--l- 212 (476)
T KOG0646|consen 147 ----VLVWLLTDL----VSADNDHSVKPLHIFSDHTLSIT---DLQIGSGGTNARLYTASEDRTIKLWDLSLGVLL--L- 212 (476)
T ss_pred ----EEEEEEEee----cccccCCCccceeeeccCcceeE---EEEecCCCccceEEEecCCceEEEEEeccceee--E-
Confidence 444443211 011001 23333 45666554 2444 45544321 1234666777766422 2
Q ss_pred CCCCCCccCCceeEEeC-CEEEEEcccCCCCCccCceeeecc------cccccCCCCceEEecCCCCCCCCCceeEEEEe
Q 013179 171 TGSVPPPRCGHTATMVE-KRLLIYGGRGGGGPIMGDLWALKG------LIEEENETPGWTQLKLPGQAPSSRCGHTITSG 243 (448)
Q Consensus 171 ~~~~p~~r~~~~~~~~~-~~lyv~GG~~~~~~~~~d~~~~~~------~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~~ 243 (448)
....|+.-+++++.. ++.+.+|+..+. -...+++.+.. ...++++..+-..+. |..-..-..+-++..
T Consensus 213 --ti~fp~si~av~lDpae~~~yiGt~~G~-I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~--Gh~~~~~ITcLais~ 287 (476)
T KOG0646|consen 213 --TITFPSSIKAVALDPAERVVYIGTEEGK-IFQNLLFKLSGQSAGVNQKGRHEENTQINVLV--GHENESAITCLAIST 287 (476)
T ss_pred --EEecCCcceeEEEcccccEEEecCCcce-EEeeehhcCCcccccccccccccccceeeeec--cccCCcceeEEEEec
Confidence 233455556666652 344445554332 11222221110 112222222222221 111111112223347
Q ss_pred CCEEEEEcCCCCCCCcccccceeCcEEEEEcCCCce
Q 013179 244 GHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQW 279 (448)
Q Consensus 244 ~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W 279 (448)
++.+++.|+.++ .+-+.|+.+.+-
T Consensus 288 DgtlLlSGd~dg------------~VcvWdi~S~Q~ 311 (476)
T KOG0646|consen 288 DGTLLLSGDEDG------------KVCVWDIYSKQC 311 (476)
T ss_pred CccEEEeeCCCC------------CEEEEecchHHH
Confidence 889999997653 467778776654
No 153
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=30.16 E-value=3.3e+02 Score=22.81 Aligned_cols=82 Identities=12% Similarity=0.118 Sum_probs=47.0
Q ss_pred EEECCeEEEEcccCCCCCCCcEEEEECCCCcE-EEeecCCCCCCcCc----ccEEEEECCcEEEEEecCCCCccCCceEE
Q 013179 83 VAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQW-SELTSFGDLPSPRD----FAAASAIGNRKIVMYGGWDGKKWLSDVYV 157 (448)
Q Consensus 83 ~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~W-~~~~~~~~~p~~r~----~~~~~~~~~~~iyv~GG~~~~~~~~~v~~ 157 (448)
+.+++.+|=++-........-+..||+.+.+. ..++ +|.... .....++.+++|-++--. .....-++|+
T Consensus 2 V~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~----lP~~~~~~~~~~~L~~v~~~~L~~~~~~-~~~~~~~IWv 76 (164)
T PF07734_consen 2 VFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLP----LPFCNDDDDDSVSLSVVRGDCLCVLYQC-DETSKIEIWV 76 (164)
T ss_pred EEECCEEEeeEEecCCCCceEEEEEeccccccCCEEC----CCCccCccCCEEEEEEecCCEEEEEEec-cCCccEEEEE
Confidence 45677777666554433222589999999999 5554 444333 222323444477766321 1122246777
Q ss_pred Ee---CCCCceEeec
Q 013179 158 LD---TISLEWMQLP 169 (448)
Q Consensus 158 yd---~~t~~W~~~~ 169 (448)
.+ -....|+++-
T Consensus 77 m~~~~~~~~SWtK~~ 91 (164)
T PF07734_consen 77 MKKYGYGKESWTKLF 91 (164)
T ss_pred EeeeccCcceEEEEE
Confidence 65 2367899874
No 154
>PRK10115 protease 2; Provisional
Probab=28.72 E-value=7.6e+02 Score=26.54 Aligned_cols=216 Identities=10% Similarity=-0.033 Sum_probs=104.4
Q ss_pred EEEECCcEEEEEcCCCCC-cccCceEEEEcCCCcE--EeeeecCCCCCCCCCCCCCcceeEEEE-CCeEEEEcccCCCCC
Q 013179 25 AVNIGKSKVVVFGGLVDK-RFLSDVVVYDIDNKLW--FQPECTGNGSNGQVGPGPRAFHIAVAI-DCHMFIFGGRFGSRR 100 (448)
Q Consensus 25 ~~~~~~~~iyv~GG~~~~-~~~~~~~~yd~~~~~W--~~~~~~~~~~~~~~~p~~R~~h~~~~~-~~~lyv~GG~~~~~~ 100 (448)
.+-..++.-+++.-.+.. ....++|++++.+..- ..+-.. +........... +++..++..... .
T Consensus 177 ~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e---------~~~~~~~~~~~s~d~~~l~i~~~~~--~ 245 (686)
T PRK10115 177 FVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEE---------KDDTFYVSLHKTTSKHYVVIHLASA--T 245 (686)
T ss_pred EEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEee---------CCCCEEEEEEEcCCCCEEEEEEECC--c
Confidence 333434444444444322 2447899999998832 223211 112223233333 443333433332 3
Q ss_pred CCcEEEEEC--CCCcEEEeecCCCCCCcCcccEEEEECCcEEEEEecCCCCccCCceEEEeCC-CCceEeecCCCCCCCc
Q 013179 101 LGDFWVLDT--DIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTI-SLEWMQLPVTGSVPPP 177 (448)
Q Consensus 101 ~~~~~~~d~--~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~-t~~W~~~~~~~~~p~~ 177 (448)
.+.++.|+. .+..|..+.+ .+.... +..... ++.+|+.--.... ...+...++. +.+|+.+- +....
T Consensus 246 ~~~~~l~~~~~~~~~~~~~~~---~~~~~~-~~~~~~-~~~ly~~tn~~~~--~~~l~~~~~~~~~~~~~l~---~~~~~ 315 (686)
T PRK10115 246 TSEVLLLDAELADAEPFVFLP---RRKDHE-YSLDHY-QHRFYLRSNRHGK--NFGLYRTRVRDEQQWEELI---PPREN 315 (686)
T ss_pred cccEEEEECcCCCCCceEEEE---CCCCCE-EEEEeC-CCEEEEEEcCCCC--CceEEEecCCCcccCeEEE---CCCCC
Confidence 356888883 3445443332 222211 222223 3488888654322 2347777776 67898885 22112
Q ss_pred cCCceeEEeCCEEEEEcccCCCCCccCceeeecccccccCCCCceEEecCCCCCCCCCceeEEEE----eCCEEE-EEcC
Q 013179 178 RCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITS----GGHYLL-LFGG 252 (448)
Q Consensus 178 r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~~~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~----~~~~i~-v~GG 252 (448)
+.--.+...++.|++..-..+. ..+..+|..+.....+.. +.+........ ..+.++ .+.+
T Consensus 316 ~~i~~~~~~~~~l~~~~~~~g~----------~~l~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~ss 381 (686)
T PRK10115 316 IMLEGFTLFTDWLVVEERQRGL----------TSLRQINRKTREVIGIAF----DDPAYVTWIAYNPEPETSRLRYGYSS 381 (686)
T ss_pred CEEEEEEEECCEEEEEEEeCCE----------EEEEEEcCCCCceEEecC----CCCceEeeecccCCCCCceEEEEEec
Confidence 2222334447777776654332 334445665555554431 22222211111 112333 3333
Q ss_pred CCCCCCcccccceeCcEEEEEcCCCceEEeccC
Q 013179 253 HGTGGWLSRYDIYYNDTIILDRLSAQWKRLPIG 285 (448)
Q Consensus 253 ~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~ 285 (448)
.. ...++|.||+.+.+|+.+...
T Consensus 382 ~~----------~P~~~y~~d~~~~~~~~l~~~ 404 (686)
T PRK10115 382 MT----------TPDTLFELDMDTGERRVLKQT 404 (686)
T ss_pred CC----------CCCEEEEEECCCCcEEEEEec
Confidence 32 236899999999999887654
No 155
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=26.92 E-value=5.9e+02 Score=24.64 Aligned_cols=98 Identities=17% Similarity=0.277 Sum_probs=52.9
Q ss_pred ceEEEEcCCC--cEEeeeecCCCCCCCCCCCCCcceeEEEECCeEEEEcccCCCCCCCcEEEEECCCC--cEEEeecCCC
Q 013179 47 DVVVYDIDNK--LWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLDTDIW--QWSELTSFGD 122 (448)
Q Consensus 47 ~~~~yd~~~~--~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~--~W~~~~~~~~ 122 (448)
.+++||..++ .|..-.. .. ++..-.++..++.+|+.- ....++.+|..++ .|+.-.+.+
T Consensus 122 ~~y~ld~~~G~~~W~~~~~---------~~-~~~~~~~v~~~~~v~~~s------~~g~~~al~~~tG~~~W~~~~~~~- 184 (370)
T COG1520 122 KLYALDASTGTLVWSRNVG---------GS-PYYASPPVVGDGTVYVGT------DDGHLYALNADTGTLKWTYETPAP- 184 (370)
T ss_pred eEEEEECCCCcEEEEEecC---------CC-eEEecCcEEcCcEEEEec------CCCeEEEEEccCCcEEEEEecCCc-
Confidence 7999999755 5766431 11 344444455556666653 2245888888865 477544311
Q ss_pred CCCcCcccEEEEECCcEEEEEecCCCCccCCceEEEeCCCC--ceEe
Q 013179 123 LPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISL--EWMQ 167 (448)
Q Consensus 123 ~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~--~W~~ 167 (448)
.+ .+.....+ +.++.+|+- ... ....++.+|+.++ .|+.
T Consensus 185 ~~-~~~~~~~~-~~~~~vy~~-~~~---~~~~~~a~~~~~G~~~w~~ 225 (370)
T COG1520 185 LS-LSIYGSPA-IASGTVYVG-SDG---YDGILYALNAEDGTLKWSQ 225 (370)
T ss_pred cc-cccccCce-eecceEEEe-cCC---CcceEEEEEccCCcEeeee
Confidence 12 22212222 445466654 222 1225899998754 4775
No 156
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=25.86 E-value=5.4e+02 Score=23.90 Aligned_cols=80 Identities=19% Similarity=0.295 Sum_probs=43.2
Q ss_pred cceEEeeeCCCCCCCCCCCCCcEEEEECCcEEEEEcCCCCCcccCceEEEEcCCC--cEEeeeecCCCCCCCCCCCCCcc
Q 013179 2 HYWVRASSSDFGGTVPQPRSGHSAVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNK--LWFQPECTGNGSNGQVGPGPRAF 79 (448)
Q Consensus 2 ~~W~~~~~~~~~g~~P~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~~~~~~~~~~p~~R~~ 79 (448)
++|+++. +-|.-.+++++++ . +|.|=+.+ .+|..+..++ -|....... -..
T Consensus 45 ~~We~il---------g~RiE~sa~vvgd-f-VV~GCy~g-----~lYfl~~~tGs~~w~f~~~~~-----------vk~ 97 (354)
T KOG4649|consen 45 LIWEAIL---------GVRIECSAIVVGD-F-VVLGCYSG-----GLYFLCVKTGSQIWNFVILET-----------VKV 97 (354)
T ss_pred EEeehhh---------CceeeeeeEEECC-E-EEEEEccC-----cEEEEEecchhheeeeeehhh-----------hcc
Confidence 4677665 4566666777774 3 55554433 3777887777 476554221 112
Q ss_pred eeEEEECCeEEEEcccCCCCCCCcEEEEECCCCc
Q 013179 80 HIAVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQ 113 (448)
Q Consensus 80 h~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~ 113 (448)
.+.+..++.+.-.|-.+ ..++.+|+.+..
T Consensus 98 ~a~~d~~~glIycgshd-----~~~yalD~~~~~ 126 (354)
T KOG4649|consen 98 RAQCDFDGGLIYCGSHD-----GNFYALDPKTYG 126 (354)
T ss_pred ceEEcCCCceEEEecCC-----CcEEEecccccc
Confidence 22333334443344333 248888887764
No 157
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=25.20 E-value=5.4e+02 Score=23.63 Aligned_cols=77 Identities=13% Similarity=0.070 Sum_probs=40.8
Q ss_pred CCcEEEeec--CCCCCCcCcccEEEEECCcEEEEEecCCCCccCCceEEEeCCCCceEeecCCCCCCCccCCceeEEeCC
Q 013179 111 IWQWSELTS--FGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEK 188 (448)
Q Consensus 111 t~~W~~~~~--~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~ 188 (448)
..-|+...| .+..+.|--......-..+.|+..||- .-+|..|+++++.+..- -...-+-|+.+.-+.
T Consensus 98 K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD------~~~y~~dlE~G~i~r~~----rGHtDYvH~vv~R~~ 167 (325)
T KOG0649|consen 98 KRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGD------GVIYQVDLEDGRIQREY----RGHTDYVHSVVGRNA 167 (325)
T ss_pred hhhhhhcCccccCcccCCccceeEeccCCCcEEEecCC------eEEEEEEecCCEEEEEE----cCCcceeeeeeeccc
Confidence 345766654 122344433333333245588888873 23788999999887652 112235566655432
Q ss_pred -EEEEEcccC
Q 013179 189 -RLLIYGGRG 197 (448)
Q Consensus 189 -~lyv~GG~~ 197 (448)
.-++-|+.+
T Consensus 168 ~~qilsG~ED 177 (325)
T KOG0649|consen 168 NGQILSGAED 177 (325)
T ss_pred CcceeecCCC
Confidence 233445544
No 158
>PRK01029 tolB translocation protein TolB; Provisional
Probab=24.53 E-value=7.1e+02 Score=24.81 Aligned_cols=61 Identities=11% Similarity=0.135 Sum_probs=33.6
Q ss_pred ccccccCCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCCCCCCCcccccceeCcEEEEEcCCCceEEecc
Q 013179 211 GLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPI 284 (448)
Q Consensus 211 ~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~ 284 (448)
.+..||+++.+.+.+... +..-...+....+..|+....... ..++|.+|+.+.+..++..
T Consensus 352 ~I~v~dl~~g~~~~Lt~~---~~~~~~p~wSpDG~~L~f~~~~~g----------~~~L~~vdl~~g~~~~Lt~ 412 (428)
T PRK01029 352 QICVYDLATGRDYQLTTS---PENKESPSWAIDSLHLVYSAGNSN----------ESELYLISLITKKTRKIVI 412 (428)
T ss_pred EEEEEECCCCCeEEccCC---CCCccceEECCCCCEEEEEECCCC----------CceEEEEECCCCCEEEeec
Confidence 344568888888877621 111111122123334544432211 1579999999888887754
No 159
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=23.91 E-value=7e+02 Score=24.49 Aligned_cols=107 Identities=7% Similarity=-0.052 Sum_probs=54.7
Q ss_pred CCceEeecCCCCCCCccCCceeEEeCCEEEEEcccCCCCCccCceeeecccccccCCCCceEEecC--CCCCCCCC--ce
Q 013179 162 SLEWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKL--PGQAPSSR--CG 237 (448)
Q Consensus 162 t~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~~~~~~~yd~~~~~W~~~~~--~g~~p~~r--~~ 237 (448)
.+.|+.+. . .....--++.++|++|++.-. .+++.++ .+++. +.+.. .+.+...+ ..
T Consensus 189 ~~~Wt~l~---~--~~~~~~DIi~~kGkfYAvD~~-------G~l~~i~----~~l~i---~~v~~~i~~~~~~g~~~~~ 249 (373)
T PLN03215 189 GNVLKALK---Q--MGYHFSDIIVHKGQTYALDSI-------GIVYWIN----SDLEF---SRFGTSLDENITDGCWTGD 249 (373)
T ss_pred CCeeeEcc---C--CCceeeEEEEECCEEEEEcCC-------CeEEEEe----cCCce---eeecceecccccCCcccCc
Confidence 38999985 3 222244677889999998321 2233332 11111 11110 00111111 12
Q ss_pred eEEEEeCCEEEEEcCCCCCCCcc----c---ccceeCcEEEEEcCCCceEEeccCCC
Q 013179 238 HTITSGGHYLLLFGGHGTGGWLS----R---YDIYYNDTIILDRLSAQWKRLPIGNE 287 (448)
Q Consensus 238 ~~~~~~~~~i~v~GG~~~~~~~~----~---~~~~~~~v~~yd~~~~~W~~~~~~~~ 287 (448)
...+...++|+++.......... . .....=.||.+|.+..+|.++...+.
T Consensus 250 ~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLgd 306 (373)
T PLN03215 250 RRFVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLGD 306 (373)
T ss_pred eeEEEECCEEEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecccCC
Confidence 33556678899888753211000 0 01122357778888999999988653
No 160
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=23.54 E-value=8.3e+02 Score=25.24 Aligned_cols=158 Identities=19% Similarity=0.135 Sum_probs=79.1
Q ss_pred cEEEEEecCCCCccCCceEEEeCCCCceEeecCCCCCCCccCCceeEEeCCEEEEEcccCCCCCc----------cCcee
Q 013179 138 RKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPI----------MGDLW 207 (448)
Q Consensus 138 ~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~----------~~d~~ 207 (448)
..+|+-++.....+ -.+-.+|+.+.+=.... ... -.+..+-+-.+.|||..-....... .....
T Consensus 172 ~~~y~p~~~~~~~~-~~i~s~dl~~~~~~~~~---~~~--g~~~~vY~S~~~LYia~~~~~~~~~~~~~~~~~~~~~~~~ 245 (521)
T PF09826_consen 172 DIIYFPGGPSGSNY-TTITSIDLDPDKASDST---SVL--GSGGNVYMSENNLYIASNRYYYEPYAMMRFEASAEPEESN 245 (521)
T ss_pred ceEEecCCCCCCcE-EEEEEEeCCCCCcccee---EEE--ecCCEEEEeCCcEEEEEecccccccccchhccccccccCC
Confidence 36776664444443 35677777443321111 000 1222333346788888754432100 00001
Q ss_pred eecccccccCCCCceEEec---CCCCCCCCCceeEEEEeCCEEEEEcCCCCCCCcccccceeCcEEEEEcCCCceEEecc
Q 013179 208 ALKGLIEEENETPGWTQLK---LPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPI 284 (448)
Q Consensus 208 ~~~~~~~yd~~~~~W~~~~---~~g~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~ 284 (448)
....++.|+++....+... .+|. -...+++--.++.+-|+-..... .........|.++++|..-+.--+++.
T Consensus 246 ~~T~I~kf~~~~~~~~y~~sg~V~G~---llnqFsmdE~~G~LRvaTT~~~~-~~~~~~~s~N~lyVLD~~L~~vG~l~~ 321 (521)
T PF09826_consen 246 ESTTIYKFALDGGKIEYVGSGSVPGY---LLNQFSMDEYDGYLRVATTSGNW-WWDSEDTSSNNLYVLDEDLKIVGSLEG 321 (521)
T ss_pred CceEEEEEEccCCcEEEEEEEEECcE---EcccccEeccCCEEEEEEecCcc-cccCCCCceEEEEEECCCCcEeEEccc
Confidence 1234556677666665332 2222 23455666678877777544210 000113456899999955555556655
Q ss_pred CCCCCCCccceEEEEECCEEEEEc
Q 013179 285 GNEPPPARAYHSMTCLGSLYLLFG 308 (448)
Q Consensus 285 ~~~~p~~r~~~~~~~~~~~i~v~G 308 (448)
. .|..| -+++=.++++.|++-
T Consensus 322 l--a~gE~-IysvRF~Gd~~Y~VT 342 (521)
T PF09826_consen 322 L--APGER-IYSVRFMGDRAYLVT 342 (521)
T ss_pred c--CCCce-EEEEEEeCCeEEEEE
Confidence 4 23344 455556788888764
No 161
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=22.92 E-value=8.4e+02 Score=25.04 Aligned_cols=139 Identities=19% Similarity=0.163 Sum_probs=64.0
Q ss_pred CCcEEEEEecCCCCccCCceEEEeCCCCceEeecCCCCCCCccCCceeEEe--CCEEEEEcccCCCCCccCceeeecccc
Q 013179 136 GNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMV--EKRLLIYGGRGGGGPIMGDLWALKGLI 213 (448)
Q Consensus 136 ~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~d~~~~~~~~ 213 (448)
.++.-+++||.++. ++.|.+.-.+-.+.. .....|..-+.+.+ ++..++.|-....- .+-++.
T Consensus 453 ~~~~~vaVGG~Dgk-----vhvysl~g~~l~ee~---~~~~h~a~iT~vaySpd~~yla~~Da~rkv-------v~yd~~ 517 (603)
T KOG0318|consen 453 PDGSEVAVGGQDGK-----VHVYSLSGDELKEEA---KLLEHRAAITDVAYSPDGAYLAAGDASRKV-------VLYDVA 517 (603)
T ss_pred CCCCEEEEecccce-----EEEEEecCCccccee---eeecccCCceEEEECCCCcEEEEeccCCcE-------EEEEcc
Confidence 55677788887664 677766554422222 22233333344444 34444444332211 111122
Q ss_pred cccCCCCceEEecCCCCCCCCCceeEEEEeCCEEEEEcCCCCCCCcccccceeCcEEEEEcCCCc-eEEeccCCCCCCCc
Q 013179 214 EEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQ-WKRLPIGNEPPPAR 292 (448)
Q Consensus 214 ~yd~~~~~W~~~~~~g~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~-W~~~~~~~~~p~~r 292 (448)
.+...++.|..- .+|..+-+-.-+++++..|..+ ..+++|+.+.-. -..+...- +.
T Consensus 518 s~~~~~~~w~FH-------takI~~~aWsP~n~~vATGSlD------------t~Viiysv~kP~~~i~iknAH----~~ 574 (603)
T KOG0318|consen 518 SREVKTNRWAFH-------TAKINCVAWSPNNKLVATGSLD------------TNVIIYSVKKPAKHIIIKNAH----LG 574 (603)
T ss_pred cCceecceeeee-------eeeEEEEEeCCCceEEEecccc------------ceEEEEEccChhhheEecccc----cc
Confidence 222245555432 2333322223566777777665 358888865322 12222210 11
Q ss_pred cceEEEEECCEEEEEccCCC
Q 013179 293 AYHSMTCLGSLYLLFGGFDG 312 (448)
Q Consensus 293 ~~~~~~~~~~~i~v~GG~~~ 312 (448)
....+..+++.-+|--|.+.
T Consensus 575 gVn~v~wlde~tvvSsG~Da 594 (603)
T KOG0318|consen 575 GVNSVAWLDESTVVSSGQDA 594 (603)
T ss_pred CceeEEEecCceEEeccCcc
Confidence 13344455665556555543
No 162
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=21.94 E-value=8.2e+02 Score=24.59 Aligned_cols=68 Identities=15% Similarity=0.166 Sum_probs=40.3
Q ss_pred EEECCeEEEEcccCCCCCCCcEEEEECCCCcEEEeecCCCCCCcCcccEEEEE-CCcEEEEEecCCCCccCCceEEEeCC
Q 013179 83 VAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAI-GNRKIVMYGGWDGKKWLSDVYVLDTI 161 (448)
Q Consensus 83 ~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~ 161 (448)
+...+++++.|+.++ .+..+|+.+.+-...- ......-.++.+ .++.+++.+.+++ .+..||+.
T Consensus 254 f~p~g~~i~Sgs~D~-----tvriWd~~~~~~~~~l-----~~hs~~is~~~f~~d~~~l~s~s~d~-----~i~vwd~~ 318 (456)
T KOG0266|consen 254 FSPDGNLLVSGSDDG-----TVRIWDVRTGECVRKL-----KGHSDGISGLAFSPDGNLLVSASYDG-----TIRVWDLE 318 (456)
T ss_pred ecCCCCEEEEecCCC-----cEEEEeccCCeEEEee-----eccCCceEEEEECCCCCEEEEcCCCc-----cEEEEECC
Confidence 334558888888664 4888899885544432 222222223333 4556777765433 37889988
Q ss_pred CCce
Q 013179 162 SLEW 165 (448)
Q Consensus 162 t~~W 165 (448)
+..-
T Consensus 319 ~~~~ 322 (456)
T KOG0266|consen 319 TGSK 322 (456)
T ss_pred CCce
Confidence 7773
No 163
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=20.67 E-value=5.3e+02 Score=25.95 Aligned_cols=64 Identities=22% Similarity=0.153 Sum_probs=36.3
Q ss_pred CCeEEEEcccCCCCCCCcEEEEECCCCcEEEeecCCCCCCcCcccEEEEECCcEEEEEecCCCCccCCceEEEeCCCC
Q 013179 86 DCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISL 163 (448)
Q Consensus 86 ~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~ 163 (448)
.+.=|+-.|++. .+-.+|.+|++-...-..+.+|.....|. .+..+|+.||.++. +..+|..++
T Consensus 269 ~g~~fLS~sfD~-----~lKlwDtETG~~~~~f~~~~~~~cvkf~p----d~~n~fl~G~sd~k-----i~~wDiRs~ 332 (503)
T KOG0282|consen 269 CGTSFLSASFDR-----FLKLWDTETGQVLSRFHLDKVPTCVKFHP----DNQNIFLVGGSDKK-----IRQWDIRSG 332 (503)
T ss_pred cCCeeeeeecce-----eeeeeccccceEEEEEecCCCceeeecCC----CCCcEEEEecCCCc-----EEEEeccch
Confidence 344455555442 25667899988766554444444333331 23489999997764 444554443
Done!