Query 013180
Match_columns 448
No_of_seqs 406 out of 2101
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 01:13:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013180.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013180hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2018 Predicted dinucleotide 100.0 4E-101 9E-106 742.7 35.6 416 3-441 2-421 (430)
2 COG1179 Dinucleotide-utilizing 100.0 1.2E-58 2.6E-63 437.5 22.4 248 61-316 7-260 (263)
3 PRK15116 sulfur acceptor prote 100.0 6.2E-53 1.3E-57 413.4 27.1 253 57-315 5-264 (268)
4 cd00755 YgdL_like Family of ac 100.0 1.4E-52 3E-57 403.9 23.9 231 74-308 1-231 (231)
5 PRK08223 hypothetical protein; 100.0 3.8E-47 8.2E-52 374.3 19.5 258 63-362 6-282 (287)
6 PRK07411 hypothetical protein; 100.0 2E-44 4.3E-49 372.4 22.5 213 56-315 10-224 (390)
7 PRK05690 molybdopterin biosynt 100.0 3.2E-44 7E-49 349.4 22.6 211 56-315 4-217 (245)
8 PRK05597 molybdopterin biosynt 100.0 5.8E-44 1.3E-48 364.8 21.6 207 64-315 6-214 (355)
9 PRK08328 hypothetical protein; 100.0 1.1E-43 2.3E-48 342.9 22.1 206 58-315 3-209 (231)
10 PRK07878 molybdopterin biosynt 100.0 4E-43 8.6E-48 363.1 23.7 213 56-315 14-232 (392)
11 PRK05600 thiamine biosynthesis 100.0 4.7E-43 1E-47 359.4 22.6 213 56-315 13-230 (370)
12 TIGR02355 moeB molybdopterin s 100.0 9.8E-43 2.1E-47 337.9 21.0 204 65-315 3-209 (240)
13 TIGR02356 adenyl_thiF thiazole 100.0 7.6E-43 1.6E-47 330.5 18.6 199 66-311 1-202 (202)
14 KOG2017 Molybdopterin synthase 100.0 1.2E-43 2.7E-48 347.8 12.6 217 52-315 34-252 (427)
15 cd00757 ThiF_MoeB_HesA_family 100.0 5.7E-42 1.2E-46 330.2 20.3 204 66-315 1-206 (228)
16 PRK07688 thiamine/molybdopteri 100.0 1.7E-41 3.6E-46 344.4 20.2 205 64-315 2-210 (339)
17 PRK12475 thiamine/molybdopteri 100.0 2E-41 4.3E-46 343.7 20.6 205 64-315 2-210 (338)
18 PRK08762 molybdopterin biosynt 100.0 9.7E-40 2.1E-44 336.4 23.4 211 58-315 109-325 (376)
19 cd01492 Aos1_SUMO Ubiquitin ac 100.0 8.7E-40 1.9E-44 308.5 19.6 177 65-315 2-178 (197)
20 cd01485 E1-1_like Ubiquitin ac 100.0 1.4E-38 3.1E-43 300.5 18.7 143 66-209 1-147 (198)
21 COG0476 ThiF Dinucleotide-util 100.0 2.3E-37 5.1E-42 302.5 20.7 212 58-315 4-218 (254)
22 PRK07877 hypothetical protein; 100.0 6E-37 1.3E-41 334.8 25.0 274 57-371 80-391 (722)
23 PRK08644 thiamine biosynthesis 100.0 1.2E-36 2.5E-41 290.2 22.5 197 67-315 11-210 (212)
24 PRK14851 hypothetical protein; 100.0 7.2E-36 1.6E-40 325.5 27.2 239 58-321 17-263 (679)
25 PRK14852 hypothetical protein; 100.0 4.6E-36 1E-40 331.9 21.7 236 58-330 306-560 (989)
26 cd01491 Ube1_repeat1 Ubiquitin 100.0 1.3E-35 2.9E-40 293.5 18.4 141 66-211 1-141 (286)
27 cd01488 Uba3_RUB Ubiquitin act 100.0 1.3E-34 2.8E-39 287.0 18.3 227 86-315 1-259 (291)
28 TIGR03603 cyclo_dehy_ocin bact 100.0 1.8E-34 3.9E-39 290.4 17.6 203 57-315 47-262 (318)
29 TIGR02354 thiF_fam2 thiamine b 100.0 1.2E-32 2.5E-37 260.5 21.0 190 72-311 9-200 (200)
30 TIGR01408 Ube1 ubiquitin-activ 100.0 2E-32 4.4E-37 308.8 23.6 203 64-315 399-610 (1008)
31 cd01487 E1_ThiF_like E1_ThiF_l 100.0 3.1E-32 6.8E-37 252.3 17.9 171 86-308 1-174 (174)
32 cd01484 E1-2_like Ubiquitin ac 100.0 1.1E-31 2.4E-36 259.1 22.4 211 86-363 1-213 (234)
33 TIGR01381 E1_like_apg7 E1-like 100.0 5.2E-32 1.1E-36 288.5 21.0 208 74-315 328-563 (664)
34 cd01489 Uba2_SUMO Ubiquitin ac 100.0 1.9E-31 4.1E-36 267.0 17.6 128 86-214 1-129 (312)
35 KOG2013 SMT3/SUMO-activating c 100.0 1.3E-31 2.8E-36 272.1 15.3 315 77-440 5-356 (603)
36 PF00899 ThiF: ThiF family; I 100.0 9.4E-31 2E-35 232.1 14.0 128 83-211 1-128 (135)
37 cd01490 Ube1_repeat2 Ubiquitin 100.0 1E-29 2.2E-34 263.6 19.8 181 86-315 1-190 (435)
38 cd01493 APPBP1_RUB Ubiquitin a 100.0 7.4E-30 1.6E-34 265.4 15.3 147 65-212 1-149 (425)
39 cd01483 E1_enzyme_family Super 100.0 8.3E-29 1.8E-33 221.5 14.4 127 86-213 1-127 (143)
40 cd01486 Apg7 Apg7 is an E1-lik 100.0 3E-28 6.5E-33 240.6 19.5 120 86-206 1-139 (307)
41 TIGR01408 Ube1 ubiquitin-activ 100.0 6.3E-29 1.4E-33 280.6 15.4 144 63-211 3-148 (1008)
42 KOG2014 SMT3/SUMO-activating c 100.0 3.7E-29 8.1E-34 242.5 11.6 152 56-211 5-156 (331)
43 TIGR03736 PRTRC_ThiF PRTRC sys 100.0 2.9E-27 6.3E-32 229.1 19.0 136 82-226 9-157 (244)
44 PRK06153 hypothetical protein; 99.9 6.3E-27 1.4E-31 237.8 14.0 127 77-207 169-298 (393)
45 PTZ00245 ubiquitin activating 99.9 6.2E-27 1.3E-31 224.2 13.0 115 65-187 7-121 (287)
46 KOG2015 NEDD8-activating compl 99.9 2E-26 4.4E-31 224.9 15.6 152 75-229 31-192 (422)
47 KOG2336 Molybdopterin biosynth 99.9 6.2E-26 1.4E-30 217.8 15.0 220 57-315 52-286 (422)
48 KOG2012 Ubiquitin activating e 99.9 2E-25 4.4E-30 238.3 8.6 161 65-227 411-580 (1013)
49 KOG2012 Ubiquitin activating e 99.9 4E-22 8.7E-27 213.3 13.4 152 56-212 9-160 (1013)
50 KOG2016 NEDD8-activating compl 99.8 3E-19 6.5E-24 180.8 8.1 146 65-211 8-155 (523)
51 TIGR03693 ocin_ThiF_like putat 99.8 9.9E-18 2.2E-22 178.1 16.5 204 64-331 103-321 (637)
52 KOG2337 Ubiquitin activating E 99.5 8.7E-14 1.9E-18 143.7 13.3 132 75-207 331-482 (669)
53 COG4015 Predicted dinucleotide 98.7 1.2E-07 2.5E-12 85.8 10.2 142 84-233 18-165 (217)
54 PRK06718 precorrin-2 dehydroge 98.2 1.2E-05 2.6E-10 76.5 11.7 93 81-205 7-99 (202)
55 PRK06719 precorrin-2 dehydroge 98.2 2.9E-05 6.3E-10 70.9 12.7 125 81-241 10-142 (157)
56 TIGR01470 cysG_Nterm siroheme 98.2 2.4E-05 5.2E-10 74.6 12.1 129 82-241 7-142 (205)
57 PRK12549 shikimate 5-dehydroge 98.1 1.9E-05 4.1E-10 79.0 9.6 77 82-184 125-201 (284)
58 COG1748 LYS9 Saccharopine dehy 98.0 4.7E-05 1E-09 79.0 11.1 97 85-207 2-99 (389)
59 PF01488 Shikimate_DH: Shikima 97.9 4E-05 8.7E-10 68.1 8.6 80 80-187 8-87 (135)
60 TIGR03882 cyclo_dehyd_2 bacter 97.9 1.3E-05 2.8E-10 75.8 4.8 38 75-112 96-134 (193)
61 PF05237 MoeZ_MoeB: MoeZ/MoeB 97.7 1.2E-05 2.7E-10 65.7 1.7 48 256-315 2-49 (84)
62 PRK05562 precorrin-2 dehydroge 97.7 0.00038 8.3E-09 67.2 11.6 130 81-241 22-158 (223)
63 PF13241 NAD_binding_7: Putati 97.7 9.4E-05 2E-09 62.6 6.5 88 81-206 4-91 (103)
64 PF03435 Saccharop_dh: Sacchar 97.4 0.00071 1.5E-08 70.1 10.0 95 87-206 1-97 (386)
65 PRK14027 quinate/shikimate deh 97.4 0.00065 1.4E-08 67.9 8.8 79 82-184 125-203 (283)
66 COG1648 CysG Siroheme synthase 97.4 0.00066 1.4E-08 65.0 8.4 96 81-207 9-104 (210)
67 PF01113 DapB_N: Dihydrodipico 97.3 0.0031 6.8E-08 55.1 11.0 94 86-207 2-98 (124)
68 PRK12548 shikimate 5-dehydroge 97.1 0.0029 6.3E-08 63.3 9.7 84 82-184 124-208 (289)
69 TIGR01809 Shik-DH-AROM shikima 97.0 0.0021 4.5E-08 64.2 8.1 78 82-185 123-200 (282)
70 PRK10637 cysG siroheme synthas 97.0 0.0092 2E-07 63.6 12.9 132 81-243 9-147 (457)
71 COG0373 HemA Glutamyl-tRNA red 96.9 0.0045 9.6E-08 64.9 10.0 76 82-188 176-251 (414)
72 COG0169 AroE Shikimate 5-dehyd 96.8 0.0037 8E-08 62.5 7.6 76 83-185 125-200 (283)
73 PRK14106 murD UDP-N-acetylmura 96.8 0.0078 1.7E-07 63.5 10.2 96 82-206 3-98 (450)
74 PRK13940 glutamyl-tRNA reducta 96.7 0.0033 7.2E-08 66.2 7.2 77 81-187 178-254 (414)
75 cd01075 NAD_bind_Leu_Phe_Val_D 96.7 0.0098 2.1E-07 56.4 9.5 36 81-117 25-60 (200)
76 COG0569 TrkA K+ transport syst 96.7 0.016 3.4E-07 56.0 10.9 96 85-207 1-99 (225)
77 PRK00258 aroE shikimate 5-dehy 96.7 0.0056 1.2E-07 60.9 7.9 76 81-185 120-195 (278)
78 PRK12749 quinate/shikimate deh 96.7 0.0073 1.6E-07 60.6 8.7 83 82-184 122-205 (288)
79 cd05213 NAD_bind_Glutamyl_tRNA 96.7 0.017 3.6E-07 58.5 11.3 84 82-196 176-259 (311)
80 TIGR01035 hemA glutamyl-tRNA r 96.6 0.014 3E-07 61.5 11.0 37 81-117 177-213 (417)
81 cd01076 NAD_bind_1_Glu_DH NAD( 96.4 0.021 4.5E-07 55.3 9.5 123 80-241 27-150 (227)
82 cd05211 NAD_bind_Glu_Leu_Phe_V 96.3 0.033 7.3E-07 53.6 10.6 107 81-208 20-127 (217)
83 COG1086 Predicted nucleoside-d 96.3 0.068 1.5E-06 57.8 13.7 122 77-217 243-384 (588)
84 PLN02819 lysine-ketoglutarate 96.3 0.033 7.1E-07 64.7 12.1 113 82-207 567-679 (1042)
85 cd01080 NAD_bind_m-THF_DH_Cycl 96.2 0.013 2.8E-07 54.2 6.6 35 81-116 41-76 (168)
86 cd01078 NAD_bind_H4MPT_DH NADP 96.1 0.035 7.5E-07 51.9 9.2 84 81-187 25-109 (194)
87 PRK00045 hemA glutamyl-tRNA re 96.0 0.035 7.7E-07 58.6 9.9 36 82-117 180-215 (423)
88 cd05312 NAD_bind_1_malic_enz N 96.0 0.049 1.1E-06 54.4 10.3 107 80-208 21-140 (279)
89 cd05311 NAD_bind_2_malic_enz N 95.9 0.0092 2E-07 57.7 4.7 38 81-118 22-61 (226)
90 cd00762 NAD_bind_malic_enz NAD 95.9 0.085 1.8E-06 51.9 11.3 108 80-208 21-141 (254)
91 cd05291 HicDH_like L-2-hydroxy 95.8 0.024 5.2E-07 57.2 7.3 33 85-117 1-34 (306)
92 PF03446 NAD_binding_2: NAD bi 95.8 0.013 2.7E-07 53.5 4.7 113 85-211 2-123 (163)
93 PF01210 NAD_Gly3P_dh_N: NAD-d 95.8 0.047 1E-06 49.6 8.3 99 86-207 1-103 (157)
94 PF03949 Malic_M: Malic enzyme 95.7 0.06 1.3E-06 53.1 9.3 108 80-208 21-141 (255)
95 cd01065 NAD_bind_Shikimate_DH 95.7 0.02 4.3E-07 51.1 5.4 36 82-117 17-52 (155)
96 PRK09242 tropinone reductase; 95.6 0.31 6.7E-06 46.9 14.0 84 81-184 6-97 (257)
97 PF13460 NAD_binding_10: NADH( 95.6 0.18 3.9E-06 45.8 11.5 98 87-215 1-105 (183)
98 PRK00048 dihydrodipicolinate r 95.5 0.13 2.7E-06 50.7 10.9 87 85-206 2-90 (257)
99 PF00056 Ldh_1_N: lactate/mala 95.4 0.055 1.2E-06 48.4 7.4 76 86-185 2-79 (141)
100 PRK06392 homoserine dehydrogen 95.4 0.12 2.7E-06 52.7 10.7 104 86-207 2-116 (326)
101 TIGR01202 bchC 2-desacetyl-2-h 95.4 0.06 1.3E-06 53.9 8.3 88 83-206 144-231 (308)
102 PF02719 Polysacc_synt_2: Poly 95.4 0.091 2E-06 52.8 9.4 100 87-205 1-124 (293)
103 cd05191 NAD_bind_amino_acid_DH 95.4 0.028 6.1E-07 45.7 4.8 37 80-116 19-55 (86)
104 PRK05476 S-adenosyl-L-homocyst 95.3 0.049 1.1E-06 57.6 7.7 37 81-118 209-245 (425)
105 cd05313 NAD_bind_2_Glu_DH NAD( 95.3 0.19 4.1E-06 49.6 11.3 38 80-117 34-71 (254)
106 PF03807 F420_oxidored: NADP o 95.3 0.045 9.8E-07 44.9 6.0 90 86-207 1-94 (96)
107 PRK12550 shikimate 5-dehydroge 95.3 0.036 7.8E-07 55.2 6.2 34 84-117 122-155 (272)
108 PLN00203 glutamyl-tRNA reducta 95.2 0.065 1.4E-06 58.1 8.5 78 82-187 264-341 (519)
109 PRK06197 short chain dehydroge 95.2 0.084 1.8E-06 52.6 8.8 43 74-117 6-49 (306)
110 TIGR02853 spore_dpaA dipicolin 95.2 0.059 1.3E-06 54.1 7.6 36 81-117 148-183 (287)
111 PF02737 3HCDH_N: 3-hydroxyacy 95.2 0.017 3.6E-07 53.9 3.3 98 86-198 1-102 (180)
112 PRK08374 homoserine dehydrogen 95.1 0.15 3.3E-06 52.2 10.5 109 85-207 3-122 (336)
113 PRK09496 trkA potassium transp 95.1 0.26 5.6E-06 51.9 12.5 99 82-206 229-328 (453)
114 PRK06270 homoserine dehydrogen 95.1 0.15 3.3E-06 52.3 10.4 107 85-206 3-124 (341)
115 PRK01438 murD UDP-N-acetylmura 95.1 0.1 2.3E-06 55.6 9.6 35 82-117 14-48 (480)
116 TIGR00507 aroE shikimate 5-deh 95.1 0.14 3E-06 50.6 9.8 35 82-117 115-149 (270)
117 PRK14192 bifunctional 5,10-met 95.1 0.051 1.1E-06 54.5 6.7 34 81-115 156-190 (283)
118 PRK07819 3-hydroxybutyryl-CoA 95.1 0.044 9.6E-07 54.8 6.2 34 85-119 6-39 (286)
119 PRK14031 glutamate dehydrogena 95.0 0.18 3.8E-06 53.6 10.8 37 81-117 225-261 (444)
120 PRK14619 NAD(P)H-dependent gly 95.0 0.14 3E-06 51.6 9.6 75 84-206 4-81 (308)
121 PRK04148 hypothetical protein; 94.9 0.27 5.9E-06 43.9 10.1 96 83-209 16-111 (134)
122 PRK13529 malate dehydrogenase; 94.9 0.15 3.2E-06 55.5 10.0 131 63-208 256-417 (563)
123 PLN03129 NADP-dependent malic 94.8 0.17 3.7E-06 55.2 10.2 106 80-208 317-436 (581)
124 PRK02705 murD UDP-N-acetylmura 94.8 0.2 4.3E-06 53.1 10.7 32 85-117 1-32 (459)
125 PRK09599 6-phosphogluconate de 94.8 0.096 2.1E-06 52.6 7.8 117 86-211 2-123 (301)
126 PRK08618 ornithine cyclodeamin 94.8 0.16 3.5E-06 51.7 9.5 97 80-206 123-220 (325)
127 cd00401 AdoHcyase S-adenosyl-L 94.8 0.2 4.4E-06 52.8 10.4 36 82-118 200-235 (413)
128 PRK11908 NAD-dependent epimera 94.7 0.4 8.6E-06 48.6 12.3 100 85-211 2-121 (347)
129 TIGR00872 gnd_rel 6-phosphoglu 94.7 0.08 1.7E-06 53.1 7.0 117 86-211 2-122 (298)
130 PRK00676 hemA glutamyl-tRNA re 94.6 0.064 1.4E-06 55.0 6.1 34 81-114 171-204 (338)
131 PF01118 Semialdhyde_dh: Semia 94.6 0.4 8.7E-06 41.4 10.3 97 86-209 1-99 (121)
132 PLN02520 bifunctional 3-dehydr 94.6 0.079 1.7E-06 57.6 7.1 34 82-116 377-410 (529)
133 PRK08251 short chain dehydroge 94.6 0.63 1.4E-05 44.3 12.6 80 84-183 2-89 (248)
134 PRK07523 gluconate 5-dehydroge 94.6 0.49 1.1E-05 45.4 11.9 36 81-117 7-43 (255)
135 TIGR00518 alaDH alanine dehydr 94.5 0.1 2.2E-06 54.2 7.5 35 82-117 165-199 (370)
136 PRK12490 6-phosphogluconate de 94.5 0.13 2.9E-06 51.6 8.1 117 86-211 2-123 (299)
137 PRK07576 short chain dehydroge 94.5 0.35 7.7E-06 47.0 10.9 39 78-117 3-42 (264)
138 PRK06141 ornithine cyclodeamin 94.5 0.19 4.2E-06 50.9 9.2 80 79-186 120-200 (314)
139 PRK12826 3-ketoacyl-(acyl-carr 94.5 0.15 3.3E-06 48.4 8.0 36 81-117 3-39 (251)
140 COG1062 AdhC Zn-dependent alco 94.5 0.29 6.3E-06 50.0 10.3 102 83-208 185-287 (366)
141 TIGR03589 PseB UDP-N-acetylglu 94.4 0.62 1.4E-05 47.0 12.8 36 82-117 2-39 (324)
142 PRK10537 voltage-gated potassi 94.4 0.21 4.6E-06 52.3 9.6 100 79-181 235-355 (393)
143 PF02254 TrkA_N: TrkA-N domain 94.4 0.48 1E-05 40.0 10.2 91 87-205 1-94 (116)
144 PRK00094 gpsA NAD(P)H-dependen 94.4 0.24 5.3E-06 49.6 9.7 32 86-118 3-34 (325)
145 PRK07062 short chain dehydroge 94.4 0.3 6.4E-06 47.2 10.0 62 82-163 6-68 (265)
146 PRK13403 ketol-acid reductoiso 94.4 0.2 4.4E-06 51.1 9.0 98 78-211 10-110 (335)
147 KOG0022 Alcohol dehydrogenase, 94.4 0.25 5.4E-06 50.0 9.4 103 83-209 192-297 (375)
148 PTZ00117 malate dehydrogenase; 94.4 0.06 1.3E-06 54.8 5.2 36 82-117 3-38 (319)
149 PRK08339 short chain dehydroge 94.3 0.75 1.6E-05 44.8 12.7 35 82-117 6-41 (263)
150 PRK07063 short chain dehydroge 94.3 0.3 6.5E-06 47.0 9.8 83 81-183 4-94 (260)
151 PRK03659 glutathione-regulated 94.3 0.26 5.6E-06 54.5 10.4 94 84-205 400-496 (601)
152 COG1087 GalE UDP-glucose 4-epi 94.3 0.34 7.4E-06 48.8 10.1 122 86-221 2-131 (329)
153 cd00300 LDH_like L-lactate deh 94.3 0.19 4.1E-06 50.6 8.5 72 87-185 1-76 (300)
154 PRK08293 3-hydroxybutyryl-CoA 94.3 0.18 3.8E-06 50.3 8.2 32 85-117 4-35 (287)
155 PTZ00317 NADP-dependent malic 94.2 0.24 5.2E-06 53.8 9.5 128 63-208 258-416 (559)
156 PRK06522 2-dehydropantoate 2-r 94.2 0.17 3.7E-06 50.2 8.0 31 86-117 2-32 (304)
157 COG1063 Tdh Threonine dehydrog 94.2 0.18 3.9E-06 51.8 8.4 102 83-208 168-271 (350)
158 PRK07634 pyrroline-5-carboxyla 94.2 0.39 8.4E-06 46.3 10.3 93 83-207 3-99 (245)
159 COG0281 SfcA Malic enzyme [Ene 94.2 0.18 4E-06 52.7 8.2 118 65-208 162-300 (432)
160 PRK07831 short chain dehydroge 94.1 0.32 6.9E-06 47.0 9.6 35 81-116 14-50 (262)
161 PRK05808 3-hydroxybutyryl-CoA 94.1 0.087 1.9E-06 52.2 5.7 32 85-117 4-35 (282)
162 PRK09496 trkA potassium transp 94.1 0.5 1.1E-05 49.7 11.7 94 85-205 1-96 (453)
163 PRK03562 glutathione-regulated 94.1 0.24 5.2E-06 54.9 9.6 89 84-200 400-489 (621)
164 PRK05653 fabG 3-ketoacyl-(acyl 94.0 0.79 1.7E-05 43.1 11.9 35 82-117 3-38 (246)
165 PF02558 ApbA: Ketopantoate re 94.0 0.078 1.7E-06 47.1 4.7 89 87-198 1-90 (151)
166 PLN03209 translocon at the inn 94.0 0.76 1.6E-05 50.4 13.0 111 79-210 75-210 (576)
167 PRK06523 short chain dehydroge 94.0 0.44 9.5E-06 45.8 10.3 73 81-156 6-80 (260)
168 PRK15469 ghrA bifunctional gly 93.9 0.25 5.3E-06 50.2 8.7 78 80-194 132-210 (312)
169 PTZ00082 L-lactate dehydrogena 93.9 0.082 1.8E-06 53.9 5.2 36 82-117 4-39 (321)
170 PRK12862 malic enzyme; Reviewe 93.9 0.22 4.7E-06 56.4 9.0 101 80-208 189-292 (763)
171 PRK08306 dipicolinate synthase 93.9 0.11 2.3E-06 52.4 5.9 36 81-117 149-184 (296)
172 PRK07066 3-hydroxybutyryl-CoA 93.9 0.19 4.1E-06 51.3 7.7 97 85-197 8-106 (321)
173 PF00070 Pyr_redox: Pyridine n 93.9 0.12 2.6E-06 41.2 5.0 54 86-151 1-54 (80)
174 PRK11880 pyrroline-5-carboxyla 93.9 0.61 1.3E-05 45.6 11.1 90 85-207 3-94 (267)
175 PRK07340 ornithine cyclodeamin 93.8 0.31 6.7E-06 49.2 9.1 80 79-187 120-200 (304)
176 COG0111 SerA Phosphoglycerate 93.8 0.94 2E-05 46.3 12.5 161 81-315 139-310 (324)
177 PRK05479 ketol-acid reductoiso 93.8 0.28 6.2E-06 50.2 8.7 36 79-115 12-47 (330)
178 PRK09310 aroDE bifunctional 3- 93.8 0.37 8E-06 51.8 10.0 35 82-117 330-364 (477)
179 PRK09880 L-idonate 5-dehydroge 93.8 0.68 1.5E-05 46.9 11.6 95 82-204 168-264 (343)
180 TIGR02992 ectoine_eutC ectoine 93.7 0.4 8.6E-06 48.9 9.8 77 83-186 128-205 (326)
181 PRK13301 putative L-aspartate 93.7 0.16 3.4E-06 50.4 6.5 116 84-209 2-123 (267)
182 PLN02427 UDP-apiose/xylose syn 93.7 0.43 9.3E-06 49.2 10.1 37 80-116 10-47 (386)
183 PRK01710 murD UDP-N-acetylmura 93.7 0.34 7.3E-06 51.6 9.6 38 80-118 10-47 (458)
184 PLN02240 UDP-glucose 4-epimera 93.6 0.81 1.7E-05 46.2 11.8 33 82-115 3-36 (352)
185 PLN02477 glutamate dehydrogena 93.6 0.49 1.1E-05 49.9 10.4 37 81-117 203-239 (410)
186 PRK09260 3-hydroxybutyryl-CoA 93.6 0.064 1.4E-06 53.4 3.6 34 85-119 2-35 (288)
187 TIGR00873 gnd 6-phosphoglucona 93.6 0.25 5.3E-06 53.0 8.2 122 86-211 1-127 (467)
188 PF03447 NAD_binding_3: Homose 93.6 0.41 8.8E-06 40.9 8.1 85 91-207 1-90 (117)
189 TIGR00936 ahcY adenosylhomocys 93.5 0.17 3.7E-06 53.2 6.9 36 82-118 193-228 (406)
190 TIGR02622 CDP_4_6_dhtase CDP-g 93.5 0.72 1.6E-05 46.8 11.2 35 82-117 2-37 (349)
191 PLN02350 phosphogluconate dehy 93.5 0.62 1.3E-05 50.3 11.1 122 85-211 7-136 (493)
192 PTZ00142 6-phosphogluconate de 93.5 0.23 5E-06 53.3 7.8 122 85-211 2-130 (470)
193 PRK00066 ldh L-lactate dehydro 93.4 0.1 2.2E-06 53.0 4.8 34 83-116 5-39 (315)
194 PRK12827 short chain dehydroge 93.4 1.5 3.2E-05 41.5 12.6 33 82-115 4-37 (249)
195 PLN02214 cinnamoyl-CoA reducta 93.4 0.72 1.6E-05 46.9 11.0 105 82-208 8-127 (342)
196 PLN02494 adenosylhomocysteinas 93.3 0.19 4.2E-06 53.7 6.7 36 82-118 252-287 (477)
197 PTZ00345 glycerol-3-phosphate 93.2 0.36 7.9E-06 50.1 8.6 106 83-207 10-129 (365)
198 KOG4169 15-hydroxyprostaglandi 93.2 0.32 7E-06 47.2 7.5 81 82-183 3-91 (261)
199 PRK13304 L-aspartate dehydroge 93.2 0.17 3.7E-06 50.0 6.0 33 85-117 2-36 (265)
200 PRK06567 putative bifunctional 93.2 0.25 5.4E-06 57.1 8.0 41 82-123 381-421 (1028)
201 cd08230 glucose_DH Glucose deh 93.2 0.46 1E-05 48.3 9.2 33 83-116 172-204 (355)
202 PRK09987 dTDP-4-dehydrorhamnos 93.1 0.37 8E-06 48.1 8.3 30 86-117 2-32 (299)
203 PRK02472 murD UDP-N-acetylmura 93.1 0.42 9.2E-06 50.4 9.1 35 82-117 3-37 (447)
204 PRK15181 Vi polysaccharide bio 93.1 1.2 2.5E-05 45.4 12.1 36 81-117 12-48 (348)
205 PRK04308 murD UDP-N-acetylmura 93.1 0.47 1E-05 50.1 9.5 36 82-118 3-38 (445)
206 PRK08217 fabG 3-ketoacyl-(acyl 93.1 0.62 1.4E-05 44.2 9.5 35 82-117 3-38 (253)
207 PRK07231 fabG 3-ketoacyl-(acyl 93.0 0.49 1.1E-05 44.9 8.7 35 82-117 3-38 (251)
208 PRK12861 malic enzyme; Reviewe 93.0 0.36 7.9E-06 54.5 8.8 101 80-208 185-288 (764)
209 PLN02657 3,8-divinyl protochlo 93.0 1 2.2E-05 47.0 11.6 105 84-208 60-182 (390)
210 PRK07232 bifunctional malic en 93.0 0.38 8.3E-06 54.3 8.9 101 80-208 181-284 (752)
211 COG1064 AdhP Zn-dependent alco 93.0 0.58 1.3E-05 48.0 9.5 93 84-206 167-259 (339)
212 COG1893 ApbA Ketopantoate redu 93.0 0.37 7.9E-06 48.9 8.0 29 85-114 1-29 (307)
213 TIGR00715 precor6x_red precorr 93.0 0.75 1.6E-05 45.4 10.0 95 85-206 1-98 (256)
214 PRK14620 NAD(P)H-dependent gly 92.9 0.44 9.5E-06 48.2 8.5 97 86-205 2-104 (326)
215 PRK05867 short chain dehydroge 92.9 0.62 1.3E-05 44.7 9.2 33 82-115 7-40 (253)
216 PRK09414 glutamate dehydrogena 92.8 1.1 2.5E-05 47.6 11.7 36 81-116 229-264 (445)
217 PRK14030 glutamate dehydrogena 92.8 0.96 2.1E-05 48.2 11.1 37 81-117 225-261 (445)
218 PRK06194 hypothetical protein; 92.8 0.47 1E-05 46.4 8.3 36 81-117 3-39 (287)
219 PRK05854 short chain dehydroge 92.8 0.53 1.2E-05 47.3 8.9 60 81-160 11-71 (313)
220 PLN02206 UDP-glucuronate decar 92.7 0.84 1.8E-05 48.5 10.7 35 81-116 116-151 (442)
221 PRK12769 putative oxidoreducta 92.7 0.67 1.5E-05 51.7 10.4 34 83-117 326-359 (654)
222 PRK08229 2-dehydropantoate 2-r 92.7 0.74 1.6E-05 46.7 9.9 32 85-117 3-34 (341)
223 PF02826 2-Hacid_dh_C: D-isome 92.7 0.19 4.1E-06 46.5 5.1 91 79-205 31-125 (178)
224 PRK13302 putative L-aspartate 92.7 0.19 4E-06 50.0 5.3 24 83-106 5-28 (271)
225 PRK08291 ectoine utilization p 92.6 0.74 1.6E-05 47.0 9.8 76 84-186 132-208 (330)
226 PRK06181 short chain dehydroge 92.6 0.8 1.7E-05 44.1 9.6 31 85-116 2-33 (263)
227 PF05368 NmrA: NmrA-like famil 92.5 1.8 4E-05 41.0 11.9 99 87-211 1-105 (233)
228 PRK06349 homoserine dehydrogen 92.5 0.7 1.5E-05 48.9 9.7 90 84-206 3-103 (426)
229 CHL00194 ycf39 Ycf39; Provisio 92.5 1.3 2.9E-05 44.3 11.4 96 86-210 2-112 (317)
230 PF00208 ELFV_dehydrog: Glutam 92.5 0.2 4.3E-06 49.1 5.2 36 81-116 29-64 (244)
231 TIGR03451 mycoS_dep_FDH mycoth 92.5 0.76 1.6E-05 46.8 9.7 34 83-116 176-209 (358)
232 PTZ00079 NADP-specific glutama 92.5 1.8 3.8E-05 46.3 12.5 37 81-117 234-270 (454)
233 cd08239 THR_DH_like L-threonin 92.5 1.2 2.7E-05 44.6 11.1 35 83-117 163-197 (339)
234 PLN02572 UDP-sulfoquinovose sy 92.4 1.8 3.9E-05 45.9 12.8 37 80-117 43-80 (442)
235 PLN02662 cinnamyl-alcohol dehy 92.4 0.81 1.8E-05 45.4 9.6 33 84-117 4-37 (322)
236 cd05290 LDH_3 A subgroup of L- 92.4 0.17 3.6E-06 51.3 4.7 31 86-116 1-32 (307)
237 PLN02740 Alcohol dehydrogenase 92.4 1 2.3E-05 46.4 10.7 35 83-117 198-232 (381)
238 PRK05872 short chain dehydroge 92.4 0.89 1.9E-05 45.1 9.8 36 81-117 6-42 (296)
239 PRK12779 putative bifunctional 92.4 0.86 1.9E-05 53.1 10.9 97 83-185 305-402 (944)
240 PF00106 adh_short: short chai 92.3 0.56 1.2E-05 41.7 7.5 59 85-162 1-60 (167)
241 COG0240 GpsA Glycerol-3-phosph 92.2 0.68 1.5E-05 47.3 8.8 102 85-207 2-105 (329)
242 PRK08213 gluconate 5-dehydroge 92.2 0.88 1.9E-05 43.8 9.3 36 80-116 8-44 (259)
243 PRK07478 short chain dehydroge 92.2 0.82 1.8E-05 43.8 9.1 35 81-116 3-38 (254)
244 PRK07680 late competence prote 92.1 1.8 3.9E-05 42.7 11.6 90 86-207 2-96 (273)
245 PRK05708 2-dehydropantoate 2-r 92.1 0.18 4E-06 50.7 4.6 33 84-117 2-34 (305)
246 PRK06949 short chain dehydroge 92.1 0.9 2E-05 43.4 9.2 34 82-116 7-41 (258)
247 COG1250 FadB 3-hydroxyacyl-CoA 92.1 0.34 7.4E-06 49.1 6.4 95 85-199 4-107 (307)
248 PRK05875 short chain dehydroge 92.1 0.96 2.1E-05 43.9 9.5 36 81-117 4-40 (276)
249 TIGR01915 npdG NADPH-dependent 92.1 0.53 1.2E-05 44.9 7.5 95 86-206 2-100 (219)
250 PRK09186 flagellin modificatio 92.1 0.87 1.9E-05 43.5 9.1 33 82-115 2-35 (256)
251 PRK06138 short chain dehydroge 92.0 0.9 2E-05 43.2 9.1 34 82-116 3-37 (252)
252 PF10727 Rossmann-like: Rossma 92.0 0.39 8.5E-06 42.4 6.0 94 83-209 9-106 (127)
253 PLN02852 ferredoxin-NADP+ redu 92.0 0.9 2E-05 49.1 9.9 96 83-186 25-125 (491)
254 PRK05866 short chain dehydroge 92.0 0.87 1.9E-05 45.3 9.3 34 82-116 38-72 (293)
255 PRK12829 short chain dehydroge 92.0 0.7 1.5E-05 44.3 8.3 38 79-117 6-44 (264)
256 TIGR00036 dapB dihydrodipicoli 91.9 0.87 1.9E-05 45.1 9.0 96 85-208 2-100 (266)
257 PRK12384 sorbitol-6-phosphate 91.9 1.3 2.8E-05 42.5 10.0 33 84-117 2-35 (259)
258 PRK12320 hypothetical protein; 91.8 1.3 2.8E-05 49.9 11.1 92 86-209 2-103 (699)
259 PRK08125 bifunctional UDP-gluc 91.8 1.9 4.2E-05 48.0 12.7 38 80-117 311-349 (660)
260 KOG0069 Glyoxylate/hydroxypyru 91.8 0.66 1.4E-05 47.5 8.1 85 80-200 158-244 (336)
261 PRK06928 pyrroline-5-carboxyla 91.8 1.7 3.8E-05 43.1 11.1 90 86-206 3-97 (277)
262 PRK06139 short chain dehydroge 91.7 0.82 1.8E-05 46.5 8.8 35 81-116 4-39 (330)
263 PRK11150 rfaD ADP-L-glycero-D- 91.7 0.66 1.4E-05 46.0 8.0 31 87-117 2-33 (308)
264 PRK12939 short chain dehydroge 91.6 0.99 2.1E-05 42.8 8.9 34 81-115 4-38 (250)
265 PRK06125 short chain dehydroge 91.6 1.3 2.8E-05 42.7 9.7 35 82-117 5-40 (259)
266 PRK10669 putative cation:proto 91.6 1 2.2E-05 49.3 9.9 34 84-118 417-450 (558)
267 COG0665 DadA Glycine/D-amino a 91.6 0.28 6E-06 50.1 5.3 43 83-126 3-45 (387)
268 PRK13394 3-hydroxybutyrate deh 91.6 0.97 2.1E-05 43.2 8.8 36 81-117 4-40 (262)
269 TIGR01373 soxB sarcosine oxida 91.5 0.32 6.9E-06 50.5 5.7 44 84-127 30-74 (407)
270 cd05293 LDH_1 A subgroup of L- 91.5 0.25 5.5E-06 50.1 4.8 34 84-117 3-37 (312)
271 TIGR03376 glycerol3P_DH glycer 91.5 0.89 1.9E-05 46.8 8.8 103 86-207 1-116 (342)
272 PRK06476 pyrroline-5-carboxyla 91.5 1.3 2.8E-05 43.3 9.6 90 86-207 2-93 (258)
273 COG0039 Mdh Malate/lactate deh 91.4 0.23 5E-06 50.4 4.4 33 85-117 1-34 (313)
274 PRK06223 malate dehydrogenase; 91.4 0.28 6E-06 49.3 5.0 32 85-116 3-34 (307)
275 PRK14618 NAD(P)H-dependent gly 91.4 0.9 2E-05 46.0 8.7 32 85-117 5-36 (328)
276 cd05292 LDH_2 A subgroup of L- 91.4 0.28 6.1E-06 49.6 5.0 32 86-117 2-34 (308)
277 PF02571 CbiJ: Precorrin-6x re 91.3 1.2 2.6E-05 43.8 9.2 95 85-206 1-99 (249)
278 PRK13303 L-aspartate dehydroge 91.3 0.62 1.3E-05 46.1 7.3 22 85-106 2-23 (265)
279 PRK15059 tartronate semialdehy 91.3 1.2 2.6E-05 44.7 9.4 111 86-211 2-122 (292)
280 PRK09291 short chain dehydroge 91.3 4.3 9.2E-05 38.7 13.0 79 84-184 2-82 (257)
281 TIGR01505 tartro_sem_red 2-hyd 91.3 0.9 1.9E-05 45.2 8.5 32 86-118 1-32 (291)
282 PRK02006 murD UDP-N-acetylmura 91.2 1.2 2.7E-05 47.8 10.0 35 82-117 5-39 (498)
283 PRK14982 acyl-ACP reductase; P 91.1 0.28 6.1E-06 50.4 4.7 37 81-117 152-190 (340)
284 PRK06128 oxidoreductase; Provi 91.1 1.5 3.3E-05 43.5 9.9 36 79-115 50-86 (300)
285 PLN02602 lactate dehydrogenase 91.1 0.29 6.3E-06 50.5 4.8 32 85-116 38-70 (350)
286 TIGR01214 rmlD dTDP-4-dehydror 91.1 1.1 2.3E-05 43.8 8.7 30 86-116 1-31 (287)
287 PLN02695 GDP-D-mannose-3',5'-e 91.0 1.5 3.3E-05 45.1 10.2 33 83-116 20-53 (370)
288 cd08281 liver_ADH_like1 Zinc-d 91.0 1.4 3.1E-05 45.1 9.8 33 84-116 192-224 (371)
289 PRK12771 putative glutamate sy 90.9 1.6 3.4E-05 47.8 10.6 35 83-118 136-170 (564)
290 PRK12809 putative oxidoreducta 90.9 1.6 3.4E-05 48.7 10.7 35 83-118 309-343 (639)
291 PRK10217 dTDP-glucose 4,6-dehy 90.9 2.3 5E-05 43.0 11.2 32 85-116 2-34 (355)
292 PRK06171 sorbitol-6-phosphate 90.8 2.9 6.2E-05 40.3 11.3 76 81-159 6-83 (266)
293 PLN02253 xanthoxin dehydrogena 90.8 1.4 2.9E-05 43.0 9.1 35 81-116 15-50 (280)
294 PRK11559 garR tartronate semia 90.8 0.88 1.9E-05 45.2 7.9 32 85-117 3-34 (296)
295 PRK11199 tyrA bifunctional cho 90.8 1.2 2.6E-05 46.3 9.1 32 85-117 99-131 (374)
296 TIGR01850 argC N-acetyl-gamma- 90.7 0.97 2.1E-05 46.5 8.3 99 85-209 1-101 (346)
297 PRK14175 bifunctional 5,10-met 90.7 0.65 1.4E-05 46.7 6.7 34 81-115 155-189 (286)
298 PLN02780 ketoreductase/ oxidor 90.6 1.3 2.9E-05 44.7 9.1 60 84-163 53-113 (320)
299 PLN00016 RNA-binding protein; 90.6 1.7 3.8E-05 44.7 10.1 115 78-212 46-169 (378)
300 PRK11259 solA N-methyltryptoph 90.6 0.35 7.6E-06 49.3 4.9 35 84-119 3-37 (376)
301 TIGR01318 gltD_gamma_fam gluta 90.6 1.6 3.4E-05 46.7 10.1 34 83-117 140-173 (467)
302 PF01408 GFO_IDH_MocA: Oxidore 90.6 0.35 7.6E-06 41.0 4.2 88 86-206 2-92 (120)
303 PRK07825 short chain dehydroge 90.5 1.1 2.3E-05 43.6 8.0 35 82-117 3-38 (273)
304 PRK09135 pteridine reductase; 90.5 1.6 3.5E-05 41.2 9.2 33 83-116 5-38 (249)
305 PRK07035 short chain dehydroge 90.5 1.7 3.7E-05 41.5 9.4 36 81-117 5-41 (252)
306 PRK00811 spermidine synthase; 90.5 1.3 2.7E-05 44.3 8.6 35 83-118 76-110 (283)
307 PRK13018 cell division protein 90.5 1.5 3.2E-05 45.9 9.3 41 81-121 25-67 (378)
308 PRK05472 redox-sensing transcr 90.5 2.3 5.1E-05 40.4 10.1 91 84-207 84-177 (213)
309 PRK07679 pyrroline-5-carboxyla 90.4 1.8 3.9E-05 42.9 9.6 91 84-206 3-98 (279)
310 PLN02166 dTDP-glucose 4,6-dehy 90.4 2.3 4.9E-05 45.2 10.9 34 83-117 119-153 (436)
311 TIGR00065 ftsZ cell division p 90.4 1.2 2.6E-05 46.0 8.6 46 77-122 10-57 (349)
312 PLN02989 cinnamyl-alcohol dehy 90.4 4.8 0.0001 40.1 12.8 33 84-117 5-38 (325)
313 TIGR03026 NDP-sugDHase nucleot 90.4 2.2 4.8E-05 44.7 10.8 41 86-127 2-42 (411)
314 PRK06940 short chain dehydroge 90.4 1.7 3.8E-05 42.5 9.5 32 84-117 2-33 (275)
315 PF01266 DAO: FAD dependent ox 90.3 0.44 9.5E-06 47.4 5.2 35 86-121 1-35 (358)
316 PRK05855 short chain dehydroge 90.3 2.7 5.9E-05 45.1 11.7 38 78-116 309-347 (582)
317 PRK07814 short chain dehydroge 90.3 1.9 4E-05 41.8 9.5 35 82-117 8-43 (263)
318 PRK00683 murD UDP-N-acetylmura 90.3 1.5 3.2E-05 46.1 9.3 35 83-118 2-36 (418)
319 cd00650 LDH_MDH_like NAD-depen 90.3 1.4 3E-05 43.3 8.6 32 87-118 1-36 (263)
320 PRK07666 fabG 3-ketoacyl-(acyl 90.2 1.3 2.9E-05 41.8 8.3 36 81-117 4-40 (239)
321 TIGR02279 PaaC-3OHAcCoADH 3-hy 90.2 0.47 1E-05 51.4 5.7 33 84-117 5-37 (503)
322 PRK06172 short chain dehydroge 90.2 2 4.3E-05 41.1 9.5 35 82-117 5-40 (253)
323 PRK07326 short chain dehydroge 90.2 2 4.3E-05 40.5 9.4 34 82-116 4-38 (237)
324 KOG0024 Sorbitol dehydrogenase 90.2 2.6 5.5E-05 43.1 10.3 101 83-208 169-275 (354)
325 TIGR03466 HpnA hopanoid-associ 90.2 2.3 5.1E-05 42.0 10.3 31 86-117 2-33 (328)
326 PRK11730 fadB multifunctional 90.1 0.25 5.4E-06 55.8 3.6 100 85-199 314-417 (715)
327 cd05296 GH4_P_beta_glucosidase 90.1 1.2 2.7E-05 47.0 8.6 96 86-202 2-104 (419)
328 PLN02827 Alcohol dehydrogenase 90.1 1.9 4.2E-05 44.4 10.0 34 83-116 193-226 (378)
329 PRK06124 gluconate 5-dehydroge 90.1 1.9 4.2E-05 41.2 9.3 35 82-117 9-44 (256)
330 PRK06179 short chain dehydroge 90.1 2.6 5.7E-05 40.7 10.3 34 84-118 4-38 (270)
331 PLN03139 formate dehydrogenase 90.0 1.2 2.6E-05 46.7 8.2 81 80-195 195-276 (386)
332 PRK07792 fabG 3-ketoacyl-(acyl 90.0 1.8 3.8E-05 43.3 9.2 36 80-116 8-44 (306)
333 PTZ00431 pyrroline carboxylate 89.9 2.1 4.6E-05 42.0 9.6 85 83-207 2-90 (260)
334 TIGR01316 gltA glutamate synth 89.9 2.3 5E-05 45.1 10.6 35 82-117 131-165 (449)
335 PRK12439 NAD(P)H-dependent gly 89.9 1.6 3.4E-05 44.8 9.0 102 85-207 8-111 (341)
336 PRK12409 D-amino acid dehydrog 89.9 0.43 9.3E-06 49.5 4.9 33 85-118 2-34 (410)
337 TIGR02197 heptose_epim ADP-L-g 89.9 2.1 4.6E-05 42.2 9.7 30 87-116 1-31 (314)
338 PRK11154 fadJ multifunctional 89.9 0.27 5.8E-06 55.5 3.6 33 85-118 310-343 (708)
339 PLN02650 dihydroflavonol-4-red 89.9 4.7 0.0001 40.8 12.4 33 84-117 5-38 (351)
340 PRK12367 short chain dehydroge 89.9 0.59 1.3E-05 45.4 5.6 40 78-118 8-48 (245)
341 TIGR01181 dTDP_gluc_dehyt dTDP 89.8 3.4 7.4E-05 40.4 11.1 31 86-116 1-33 (317)
342 PRK03369 murD UDP-N-acetylmura 89.8 0.66 1.4E-05 49.9 6.4 33 83-116 11-43 (488)
343 TIGR01472 gmd GDP-mannose 4,6- 89.8 3.6 7.9E-05 41.5 11.5 32 85-117 1-33 (343)
344 PLN00141 Tic62-NAD(P)-related 89.8 4.7 0.0001 38.8 11.8 33 80-113 13-46 (251)
345 PLN02688 pyrroline-5-carboxyla 89.7 3.6 7.9E-05 40.1 11.1 23 86-108 2-24 (266)
346 PRK10538 malonic semialdehyde 89.7 1.7 3.7E-05 41.6 8.6 31 86-117 2-33 (248)
347 PLN00106 malate dehydrogenase 89.6 0.53 1.1E-05 48.1 5.2 36 83-118 17-54 (323)
348 PRK08264 short chain dehydroge 89.6 0.49 1.1E-05 44.8 4.7 38 81-118 3-41 (238)
349 PRK09072 short chain dehydroge 89.6 1.9 4.2E-05 41.5 9.0 35 82-117 3-38 (263)
350 PRK06196 oxidoreductase; Provi 89.5 1.8 3.9E-05 43.3 9.0 36 81-117 23-59 (315)
351 smart00846 Gp_dh_N Glyceraldeh 89.4 0.55 1.2E-05 42.5 4.6 114 86-205 2-117 (149)
352 COG0673 MviM Predicted dehydro 89.4 2.4 5.2E-05 42.6 9.8 127 83-241 2-142 (342)
353 PRK04207 glyceraldehyde-3-phos 89.4 2.2 4.7E-05 43.9 9.6 39 169-209 73-111 (341)
354 PRK06249 2-dehydropantoate 2-r 89.4 0.5 1.1E-05 47.7 4.8 34 84-118 5-38 (313)
355 PRK06035 3-hydroxyacyl-CoA deh 89.4 0.52 1.1E-05 47.0 4.9 33 85-118 4-36 (291)
356 TIGR01377 soxA_mon sarcosine o 89.3 0.51 1.1E-05 48.1 4.9 33 86-119 2-34 (380)
357 PTZ00188 adrenodoxin reductase 89.3 2.4 5.2E-05 45.9 10.0 96 83-186 38-137 (506)
358 TIGR01763 MalateDH_bact malate 89.3 0.52 1.1E-05 47.7 4.9 32 85-116 2-33 (305)
359 PRK07109 short chain dehydroge 89.3 1.8 3.9E-05 44.0 8.9 35 81-116 5-40 (334)
360 PRK08324 short chain dehydroge 89.3 3.3 7.2E-05 46.4 11.7 34 83-117 421-455 (681)
361 PRK05565 fabG 3-ketoacyl-(acyl 89.3 2.1 4.5E-05 40.4 8.8 32 81-113 2-34 (247)
362 TIGR02818 adh_III_F_hyde S-(hy 89.3 3.2 7E-05 42.5 10.8 33 84-116 186-218 (368)
363 cd01339 LDH-like_MDH L-lactate 89.3 0.45 9.8E-06 47.7 4.4 31 87-117 1-31 (300)
364 TIGR01772 MDH_euk_gproteo mala 89.3 0.51 1.1E-05 48.0 4.8 33 86-118 1-35 (312)
365 PRK08226 short chain dehydroge 89.2 1.4 3.1E-05 42.3 7.7 36 80-116 2-38 (263)
366 TIGR02437 FadB fatty oxidation 89.2 0.35 7.7E-06 54.5 3.9 100 85-199 314-417 (714)
367 PRK08057 cobalt-precorrin-6x r 89.0 3.8 8.3E-05 40.3 10.6 94 84-207 2-99 (248)
368 COG0771 MurD UDP-N-acetylmuram 89.0 1 2.2E-05 48.0 6.9 39 81-120 4-42 (448)
369 PRK00436 argC N-acetyl-gamma-g 89.0 2.2 4.7E-05 43.9 9.2 97 85-209 3-101 (343)
370 cd08300 alcohol_DH_class_III c 89.0 3.2 7E-05 42.4 10.5 35 83-117 186-220 (368)
371 PF10087 DUF2325: Uncharacteri 89.0 2.6 5.7E-05 35.0 8.1 70 138-210 10-85 (97)
372 PRK10675 UDP-galactose-4-epime 88.9 5.2 0.00011 40.0 11.9 29 86-115 2-31 (338)
373 PRK08265 short chain dehydroge 88.9 0.61 1.3E-05 45.1 4.9 36 81-117 3-39 (261)
374 PRK07530 3-hydroxybutyryl-CoA 88.9 0.6 1.3E-05 46.5 4.9 33 84-117 4-36 (292)
375 PRK13984 putative oxidoreducta 88.9 2.3 4.9E-05 46.9 9.9 36 83-119 282-317 (604)
376 PRK07806 short chain dehydroge 88.8 2.1 4.6E-05 40.6 8.5 34 81-115 3-37 (248)
377 PRK07067 sorbitol dehydrogenas 88.8 1.1 2.4E-05 43.0 6.5 37 81-118 3-40 (257)
378 cd02201 FtsZ_type1 FtsZ is a G 88.7 2.4 5.1E-05 42.9 9.1 39 86-124 2-42 (304)
379 COG1712 Predicted dinucleotide 88.7 1 2.2E-05 43.6 6.1 31 86-117 2-35 (255)
380 PRK12810 gltD glutamate syntha 88.7 3.4 7.3E-05 44.2 10.8 34 83-117 142-175 (471)
381 PRK13243 glyoxylate reductase; 88.7 0.59 1.3E-05 47.8 4.8 36 80-116 146-181 (333)
382 PRK06130 3-hydroxybutyryl-CoA 88.7 0.63 1.4E-05 46.7 4.9 32 85-117 5-36 (311)
383 PRK08268 3-hydroxy-acyl-CoA de 88.7 0.63 1.4E-05 50.5 5.2 33 85-118 8-40 (507)
384 PRK07453 protochlorophyllide o 88.7 2 4.3E-05 43.0 8.6 34 82-116 4-38 (322)
385 PF01494 FAD_binding_3: FAD bi 88.6 0.6 1.3E-05 46.3 4.7 34 85-119 2-35 (356)
386 PF04321 RmlD_sub_bind: RmlD s 88.6 3.4 7.3E-05 41.1 10.1 98 86-208 2-101 (286)
387 cd01337 MDH_glyoxysomal_mitoch 88.5 0.58 1.3E-05 47.5 4.6 32 86-117 2-35 (310)
388 PLN02503 fatty acyl-CoA reduct 88.5 6.1 0.00013 43.8 12.8 133 75-215 110-275 (605)
389 PRK05650 short chain dehydroge 88.5 2.9 6.3E-05 40.5 9.4 30 86-116 2-32 (270)
390 PRK12480 D-lactate dehydrogena 88.5 0.67 1.4E-05 47.4 5.0 88 80-206 142-233 (330)
391 PRK08589 short chain dehydroge 88.5 2.1 4.5E-05 41.8 8.3 34 81-115 3-37 (272)
392 PRK10309 galactitol-1-phosphat 88.4 2.7 5.9E-05 42.4 9.4 97 83-204 160-258 (347)
393 COG0300 DltE Short-chain dehyd 88.3 2.4 5.3E-05 42.1 8.7 82 82-184 4-93 (265)
394 PTZ00325 malate dehydrogenase; 88.3 0.6 1.3E-05 47.7 4.5 35 82-116 6-42 (321)
395 PRK00141 murD UDP-N-acetylmura 88.3 0.56 1.2E-05 50.2 4.5 40 77-117 8-47 (473)
396 PRK06198 short chain dehydroge 88.3 1 2.3E-05 43.1 6.0 37 81-117 3-40 (260)
397 PRK08643 acetoin reductase; Va 88.2 3.3 7.1E-05 39.6 9.5 31 84-115 2-33 (256)
398 PRK12429 3-hydroxybutyrate deh 88.2 2.8 6.1E-05 39.9 8.9 34 82-116 2-36 (258)
399 PRK08300 acetaldehyde dehydrog 88.1 6.1 0.00013 40.0 11.5 95 83-208 3-102 (302)
400 TIGR03366 HpnZ_proposed putati 88.1 3.3 7.1E-05 40.6 9.6 35 82-116 119-153 (280)
401 PRK07074 short chain dehydroge 88.1 2.8 6.1E-05 40.1 8.9 33 84-117 2-35 (257)
402 PRK08278 short chain dehydroge 88.1 3.6 7.9E-05 40.1 9.8 35 82-117 4-39 (273)
403 PLN02896 cinnamyl-alcohol dehy 88.1 6.4 0.00014 39.9 11.9 33 83-116 9-42 (353)
404 TIGR01921 DAP-DH diaminopimela 88.0 3.9 8.5E-05 41.8 10.2 108 84-205 3-117 (324)
405 PRK07677 short chain dehydroge 88.0 3.4 7.3E-05 39.5 9.4 33 84-117 1-34 (252)
406 PRK12778 putative bifunctional 88.0 3.1 6.8E-05 47.2 10.5 35 82-117 429-463 (752)
407 TIGR02441 fa_ox_alpha_mit fatt 88.0 0.37 8E-06 54.6 3.0 100 85-199 336-439 (737)
408 PRK05335 tRNA (uracil-5-)-meth 88.0 0.68 1.5E-05 49.1 4.8 32 84-116 2-33 (436)
409 PRK15438 erythronate-4-phospha 87.9 0.68 1.5E-05 48.3 4.7 35 81-116 113-147 (378)
410 PRK08063 enoyl-(acyl carrier p 87.9 2.9 6.3E-05 39.7 8.8 30 82-111 2-32 (250)
411 PRK09853 putative selenate red 87.9 2.3 4.9E-05 49.8 9.3 35 83-118 538-572 (1019)
412 PRK12491 pyrroline-5-carboxyla 87.8 1.5 3.3E-05 43.5 7.0 80 84-196 2-84 (272)
413 TIGR03364 HpnW_proposed FAD de 87.8 0.98 2.1E-05 46.0 5.8 34 86-120 2-35 (365)
414 KOG1371 UDP-glucose 4-epimeras 87.8 7.2 0.00016 39.9 11.6 124 84-227 2-147 (343)
415 PRK00711 D-amino acid dehydrog 87.7 0.76 1.6E-05 47.6 5.0 32 86-118 2-33 (416)
416 PRK06185 hypothetical protein; 87.7 0.73 1.6E-05 47.7 4.8 35 83-118 5-39 (407)
417 TIGR01757 Malate-DH_plant mala 87.7 0.8 1.7E-05 47.9 5.1 34 84-117 44-84 (387)
418 TIGR01746 Thioester-redct thio 87.7 6.9 0.00015 39.0 11.8 30 86-115 1-32 (367)
419 PRK07494 2-octaprenyl-6-methox 87.7 0.69 1.5E-05 47.5 4.6 35 84-119 7-41 (388)
420 PRK12814 putative NADPH-depend 87.7 3.5 7.5E-05 46.1 10.5 35 83-118 192-226 (652)
421 PRK07454 short chain dehydroge 87.6 3.9 8.4E-05 38.7 9.5 33 84-117 6-39 (241)
422 PLN02928 oxidoreductase family 87.6 0.71 1.5E-05 47.6 4.6 106 80-211 155-265 (347)
423 TIGR03206 benzo_BadH 2-hydroxy 87.6 3.2 7E-05 39.3 8.9 35 82-117 1-36 (250)
424 PRK01747 mnmC bifunctional tRN 87.6 0.71 1.5E-05 51.5 4.9 33 85-118 261-293 (662)
425 PRK06545 prephenate dehydrogen 87.6 1.7 3.6E-05 44.9 7.4 32 85-117 1-32 (359)
426 TIGR01759 MalateDH-SF1 malate 87.5 0.69 1.5E-05 47.2 4.4 32 85-116 4-42 (323)
427 cd00704 MDH Malate dehydrogena 87.5 0.71 1.5E-05 47.1 4.5 34 85-118 1-41 (323)
428 PRK07856 short chain dehydroge 87.5 2.3 5E-05 40.7 7.9 36 82-118 4-40 (252)
429 TIGR01777 yfcH conserved hypot 87.5 7.3 0.00016 37.7 11.5 31 87-118 1-32 (292)
430 PF02629 CoA_binding: CoA bind 87.5 4.4 9.4E-05 33.5 8.5 90 83-206 2-92 (96)
431 cd08299 alcohol_DH_class_I_II_ 87.3 5.4 0.00012 41.0 11.0 34 84-117 191-224 (373)
432 PRK06184 hypothetical protein; 87.3 0.71 1.5E-05 49.5 4.6 34 83-117 2-35 (502)
433 TIGR01832 kduD 2-deoxy-D-gluco 87.3 0.87 1.9E-05 43.3 4.8 34 82-116 3-37 (248)
434 PRK03803 murD UDP-N-acetylmura 87.3 2.2 4.8E-05 45.1 8.3 33 84-117 6-38 (448)
435 PRK08773 2-octaprenyl-3-methyl 87.3 0.72 1.6E-05 47.5 4.5 35 84-119 6-40 (392)
436 PRK09330 cell division protein 87.2 3.4 7.4E-05 43.3 9.3 108 82-207 11-134 (384)
437 KOG0068 D-3-phosphoglycerate d 87.2 4.7 0.0001 41.5 9.9 163 81-314 143-310 (406)
438 PRK00257 erythronate-4-phospha 87.2 0.8 1.7E-05 47.9 4.7 36 80-116 112-147 (381)
439 PRK08818 prephenate dehydrogen 87.2 3.6 7.8E-05 42.9 9.5 35 82-116 2-37 (370)
440 COG3640 CooC CO dehydrogenase 87.2 6.7 0.00014 38.5 10.6 61 86-149 2-69 (255)
441 PRK06046 alanine dehydrogenase 87.2 3.6 7.7E-05 41.9 9.4 77 83-187 128-205 (326)
442 PRK07102 short chain dehydroge 87.1 13 0.00029 35.1 12.9 32 85-117 2-34 (243)
443 TIGR01758 MDH_euk_cyt malate d 87.1 0.74 1.6E-05 47.0 4.4 32 86-117 1-39 (324)
444 PRK06129 3-hydroxyacyl-CoA deh 87.1 0.84 1.8E-05 45.9 4.7 33 85-118 3-35 (308)
445 TIGR02440 FadJ fatty oxidation 87.0 0.56 1.2E-05 52.8 3.8 33 85-118 305-338 (699)
446 PRK06182 short chain dehydroge 87.0 2.4 5.3E-05 41.1 7.9 34 83-117 2-36 (273)
447 PRK12775 putative trifunctiona 87.0 3.7 8E-05 48.3 10.5 97 83-185 429-527 (1006)
448 PTZ00075 Adenosylhomocysteinas 87.0 0.9 1.9E-05 48.7 5.0 37 81-118 251-287 (476)
449 PLN02545 3-hydroxybutyryl-CoA 86.9 0.92 2E-05 45.2 4.9 33 85-118 5-37 (295)
450 PRK05714 2-octaprenyl-3-methyl 86.9 0.74 1.6E-05 47.7 4.4 34 84-118 2-35 (405)
451 PF00670 AdoHcyase_NAD: S-aden 86.9 0.87 1.9E-05 41.9 4.2 38 81-119 20-57 (162)
452 TIGR03315 Se_ygfK putative sel 86.9 3.6 7.8E-05 48.3 10.2 35 83-118 536-570 (1012)
453 PRK07097 gluconate 5-dehydroge 86.8 4.1 8.9E-05 39.3 9.3 34 81-115 7-41 (265)
454 PRK12744 short chain dehydroge 86.8 4.1 8.9E-05 39.1 9.2 33 81-113 5-38 (257)
455 PRK07502 cyclohexadienyl dehyd 86.8 0.88 1.9E-05 45.7 4.7 34 84-117 6-40 (307)
456 PRK15461 NADH-dependent gamma- 86.8 2.6 5.7E-05 42.2 8.1 113 85-211 2-124 (296)
457 PRK12825 fabG 3-ketoacyl-(acyl 86.8 4.2 9E-05 38.1 9.1 29 82-110 4-33 (249)
458 cd08277 liver_alcohol_DH_like 86.7 7.7 0.00017 39.6 11.7 35 83-117 184-218 (365)
459 PRK11749 dihydropyrimidine deh 86.7 4.2 9.1E-05 43.2 10.0 34 83-117 139-172 (457)
460 PRK03806 murD UDP-N-acetylmura 86.6 2 4.4E-05 45.2 7.6 35 82-117 4-38 (438)
461 TIGR02028 ChlP geranylgeranyl 86.6 0.82 1.8E-05 47.7 4.5 31 86-117 2-32 (398)
462 cd01338 MDH_choloroplast_like 86.6 0.81 1.8E-05 46.7 4.3 34 84-117 2-42 (322)
463 PRK06841 short chain dehydroge 86.5 1.1 2.3E-05 42.9 5.0 34 82-116 13-47 (255)
464 cd08301 alcohol_DH_plants Plan 86.5 5.4 0.00012 40.7 10.4 35 83-117 187-221 (369)
465 PRK08277 D-mannonate oxidoredu 86.4 1.8 3.8E-05 42.1 6.5 36 81-117 7-43 (278)
466 PRK05717 oxidoreductase; Valid 86.4 1.4 3E-05 42.3 5.7 36 81-117 7-43 (255)
467 PRK08309 short chain dehydroge 86.3 5.2 0.00011 37.1 9.2 101 86-210 2-114 (177)
468 PRK06500 short chain dehydroge 86.3 0.79 1.7E-05 43.5 3.9 36 81-117 3-39 (249)
469 PRK07608 ubiquinone biosynthes 86.2 1 2.2E-05 46.1 4.9 34 85-119 6-39 (388)
470 PF05834 Lycopene_cycl: Lycope 86.2 3.4 7.3E-05 42.7 8.8 50 87-137 2-53 (374)
471 PRK06935 2-deoxy-D-gluconate 3 86.2 4.4 9.5E-05 38.9 9.1 36 81-117 12-48 (258)
472 PRK08013 oxidoreductase; Provi 86.1 0.95 2.1E-05 47.0 4.7 34 84-118 3-36 (400)
473 TIGR03570 NeuD_NnaD sugar O-ac 86.0 6 0.00013 36.2 9.6 88 86-205 1-88 (201)
474 PRK06057 short chain dehydroge 86.0 1.1 2.4E-05 43.0 4.8 36 81-117 4-40 (255)
475 PRK08850 2-octaprenyl-6-methox 86.0 0.85 1.9E-05 47.3 4.3 33 84-117 4-36 (405)
476 PRK09126 hypothetical protein; 86.0 0.99 2.2E-05 46.3 4.7 35 84-119 3-37 (392)
477 KOG1205 Predicted dehydrogenas 85.9 4.7 0.0001 40.5 9.2 39 75-113 3-42 (282)
478 PLN02256 arogenate dehydrogena 85.9 1.1 2.5E-05 45.2 5.0 36 81-117 33-68 (304)
479 PRK07364 2-octaprenyl-6-methox 85.8 0.97 2.1E-05 46.8 4.6 34 85-119 19-52 (415)
480 PRK06436 glycerate dehydrogena 85.8 0.69 1.5E-05 46.8 3.3 37 80-117 118-154 (303)
481 PRK11728 hydroxyglutarate oxid 85.7 1.1 2.3E-05 46.5 4.7 33 85-118 3-37 (393)
482 PRK07236 hypothetical protein; 85.7 1 2.2E-05 46.4 4.6 36 82-118 4-39 (386)
483 PRK08849 2-octaprenyl-3-methyl 85.7 0.99 2.2E-05 46.5 4.5 33 84-117 3-35 (384)
484 TIGR03325 BphB_TodD cis-2,3-di 85.6 1.9 4E-05 41.7 6.1 34 82-116 3-37 (262)
485 COG2099 CobK Precorrin-6x redu 85.5 5 0.00011 39.5 8.9 94 84-205 2-98 (257)
486 PRK08862 short chain dehydroge 85.4 4.7 0.0001 38.4 8.8 33 82-115 3-36 (227)
487 KOG2250 Glutamate/leucine/phen 85.4 5.7 0.00012 42.5 9.8 40 80-119 247-286 (514)
488 PRK07060 short chain dehydroge 85.3 1.3 2.9E-05 41.8 4.9 35 82-117 7-42 (245)
489 PRK12921 2-dehydropantoate 2-r 85.3 1.1 2.3E-05 44.6 4.4 30 86-116 2-31 (305)
490 PRK08655 prephenate dehydrogen 85.3 2.6 5.7E-05 44.8 7.6 31 86-117 2-33 (437)
491 TIGR00137 gid_trmFO tRNA:m(5)U 85.3 1.2 2.6E-05 47.4 4.9 32 85-117 1-32 (433)
492 PRK12748 3-ketoacyl-(acyl-carr 85.2 2.3 5E-05 40.8 6.6 35 82-117 3-40 (256)
493 PRK08340 glucose-1-dehydrogena 85.2 5.3 0.00011 38.4 9.1 30 86-116 2-32 (259)
494 cd05297 GH4_alpha_glucosidase_ 85.2 3.3 7.1E-05 43.8 8.2 94 86-201 2-102 (423)
495 PRK07889 enoyl-(acyl carrier p 85.2 2.8 6.1E-05 40.5 7.2 36 80-116 3-41 (256)
496 TIGR02032 GG-red-SF geranylger 85.2 1.2 2.7E-05 43.1 4.8 33 86-119 2-34 (295)
497 PRK07832 short chain dehydroge 85.2 4.8 0.0001 39.1 8.9 30 86-116 2-32 (272)
498 TIGR00696 wecB_tagA_cpsF bacte 85.2 3.6 7.9E-05 38.3 7.6 69 140-208 61-133 (177)
499 PLN02586 probable cinnamyl alc 85.2 4 8.7E-05 41.8 8.7 33 83-116 183-215 (360)
500 PRK12831 putative oxidoreducta 85.2 5.3 0.00011 42.7 9.9 34 83-117 139-172 (464)
No 1
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-101 Score=742.69 Aligned_cols=416 Identities=53% Similarity=0.857 Sum_probs=373.9
Q ss_pred ccchhHHHHHhHHHHHHHHHHHHHHH-HHhhcccccccCCCCCCCCCCCCCCccccchhHHHHHHhhhhHhhcCHHHHHH
Q 013180 3 ETGKLKSLALLGTGAVLGSVSTVFLY-KLLSRNIARSHSKNVPNCMTHNGIPALDLLKDEVVAEQLTRNIQFFGVESQQK 81 (448)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~~Rq~~~~G~~~q~k 81 (448)
.+++|. | +++||++..+++..+. .|...... ...+.. + ....-..||+++++||++||+.|||+++|+|
T Consensus 2 ~k~twk-l--i~ttal~~v~~t~~~~ta~k~~k~s-~a~~~~----k--~~sk~~~ydd~lireqLarN~aFfGee~m~k 71 (430)
T KOG2018|consen 2 AKNTWK-L--IATTALISVFSTQLALTAGKGIKLS-TAPDKN----K--NGSKPRQYDDELIREQLARNYAFFGEEGMEK 71 (430)
T ss_pred CcchHH-H--HHHHHHHHHHHHHHHHHhhhhheec-ccCCcc----c--CCCCcccccHHHHHHHHHhHHhhhhhhHHHH
Confidence 455666 5 7899999999987764 44433221 111111 0 0111148999999999999999999999999
Q ss_pred hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180 82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL 161 (448)
Q Consensus 82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~ 161 (448)
|+++.|+||||||||||++.+|+||||++|+|||+|+|++|+||||.+++.+|||.||+.|++++++++.|||+|++.+.
T Consensus 72 l~~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqVSlsSLNrHs~Atl~DVG~PK~~clkkh~skiaPw~eIdar~~ 151 (430)
T KOG2018|consen 72 LTNSYVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQVSLSSLNRHSCATLADVGTPKVMCLKKHFSKIAPWCEIDARNM 151 (430)
T ss_pred hcCcEEEEEecCchhHHHHHHHHHhcCceEEEechhhccHhhhhhhhhhhHhhcCCchHHHHHHHHHhhCccceecHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCccCCCceEEcccccccCChhhHHHHHHHhh
Q 013180 162 LYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADPTRIRVADLRESTNDPLSRAVMHRLRK 241 (448)
Q Consensus 162 ~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~dpt~i~i~di~~~~~dpl~~~~r~~l~~ 241 (448)
.++.++.++++.+++|+||||+||+++++.|.+||+.+++++|+++|+++|+||||++|+||+++..||++|++|++||+
T Consensus 152 l~~~~s~edll~gnPdFvvDciDNidtKVdLL~y~~~~~l~Viss~GaaaksDPTrv~v~Dis~t~~DPlsR~vRrrLrk 231 (430)
T KOG2018|consen 152 LWTSSSEEDLLSGNPDFVVDCIDNIDTKVDLLEYCYNHGLKVISSTGAAAKSDPTRVNVADISETEEDPLSRSVRRRLRK 231 (430)
T ss_pred hcCCCchhhhhcCCCCeEeEhhhhhhhhhHHHHHHHHcCCceEeccCccccCCCceeehhhccccccCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hcCccCCeeEEeCCCCC---cccCCCCCCCCCCCCCCCCCCccCCcccccCCcccchHHHHHHHHHHHHHHHHHcCCCCC
Q 013180 242 DYGIEGGIPVVFSLEKP---KAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGSIPAIFGMVMASHVVTQLAERQVQT 318 (448)
Q Consensus 242 ~~g~~g~i~~v~s~e~p---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvlg~~~~i~G~~~A~~vi~~l~g~~~~~ 318 (448)
+||.+|||||||.|+| +++++|+++++++++++.+++++|+||+|++|||||||+|||.++|+++|..|+++|+++
T Consensus 232 -~GI~~GIpVVFS~Ekpdprka~lLp~~d~e~erg~~delsav~dfrvRilPvlGtmP~iFGltiat~vlt~ia~~pmep 310 (430)
T KOG2018|consen 232 -RGIEGGIPVVFSLEKPDPRKAKLLPLEDEEGERGNVDELSAVPDFRVRILPVLGTMPGIFGLTIATYVLTQIAQYPMEP 310 (430)
T ss_pred -hccccCCceEEecCCCCccccccCCCCccccccCChhhhhhccchhhhhcccccCcchHHHHHHHHHHHHHHhcCCCCc
Confidence 9999999999999998 788999999999999999999999999999999999999999999999999999999886
Q ss_pred CccccccHHHHHHHHHHHhhhHHhhhCCCCccccCHHHHHHHHHHHhcCCCcCCCCccccccccccccCceEEeecCCCC
Q 013180 319 EPIVNMDVDHYRLLHQRLTEHEESLYGTAKEVQVDVEEVMYVAKELWHGRSAWEHSAKDVGRGMWRSVNELMLVRWDREK 398 (448)
Q Consensus 319 ~~~~~~~~~~y~~~~~~l~~~~~~~~~~~~~~~i~~~DV~yLveEvwrgrS~~s~~~~~~~~~~~~~~~~L~l~RWd~~~ 398 (448)
....+ |.+.|+.++++|++ +..++|.+...+++.+||.||+||+|+|||++++.++ .+|+|+|||+++
T Consensus 311 i~~~n-rlk~Yd~i~q~l~~-e~~r~g~n~er~l~leev~YiVeEv~~GrS~i~~~st----------~kltlvrWd~~k 378 (430)
T KOG2018|consen 311 IENKN-RLKHYDLIHQRLIE-EMTRYGTNAERELDLEEVSYIVEEVFHGRSAISGTST----------DKLTLVRWDAKK 378 (430)
T ss_pred ccccc-hhHHHHHHHHHHHH-HHHHhCCCccccccHHHHHHHHHHHHcCCCCCCCccc----------ceeEEEeecCCC
Confidence 65555 89999999999999 5777887766699999999999999999999999853 499999999999
Q ss_pred CCCCCcEEEeCHHHHHHHhccCchhhhcchhHHHHHHHHHHHH
Q 013180 399 PATVSNLVLLKFKEADEHESRTLDDIKEKEPAFFERVTSVLKR 441 (448)
Q Consensus 399 p~~~~Nlvllt~~Ea~~He~~~~~~~~~~~~~~~~~v~~~~~~ 441 (448)
|+++.|+|+||++||+.||+++|++..+.+..+.++|-..+..
T Consensus 379 p~sltNlVlltk~Ea~~HE~rvL~~~~~~~tvy~e~Vl~vv~~ 421 (430)
T KOG2018|consen 379 PISLTNLVLLTKNEADEHEDRVLEEVEELETVYFERVLCVVKK 421 (430)
T ss_pred CcceeeeEEeechHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Confidence 9999999999999999999988777666655555555444433
No 2
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=100.00 E-value=1.2e-58 Score=437.50 Aligned_cols=248 Identities=35% Similarity=0.572 Sum_probs=224.6
Q ss_pred HHHHHHhhhhHhhcCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHH
Q 013180 61 EVVAEQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKA 140 (448)
Q Consensus 61 e~~~e~~~Rq~~~~G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv 140 (448)
+.+++||.|+.+|+|+++++||++++|+|+|+||||||++++|+|+|||+|+|||.|.|+.+|+|||..+...+||++|+
T Consensus 7 ~~~~~rf~~~~~l~G~~~lekl~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv 86 (263)
T COG1179 7 DAYRQRFGGIARLYGEDGLEKLKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKV 86 (263)
T ss_pred HHHHHHhhhHHHHcChhHHHHHhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCceEEEEeccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCccCCCceEE
Q 013180 141 LCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADPTRIRV 220 (448)
Q Consensus 141 ~~~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~dpt~i~i 220 (448)
+++++|+++|||+|+|+++..+++++|.++++..+||+||||+|++.+|..|..+|+++++|+|++||+|++.||||++|
T Consensus 87 ~vm~eri~~InP~c~V~~~~~f~t~en~~~~~~~~~DyvIDaiD~v~~Kv~Li~~c~~~ki~vIss~Gag~k~DPTri~v 166 (263)
T COG1179 87 EVMKERIKQINPECEVTAINDFITEENLEDLLSKGFDYVIDAIDSVRAKVALIAYCRRNKIPVISSMGAGGKLDPTRIQV 166 (263)
T ss_pred HHHHHHHHhhCCCceEeehHhhhCHhHHHHHhcCCCCEEEEchhhhHHHHHHHHHHHHcCCCEEeeccccCCCCCceEEe
Confidence 99999999999999999999999999999999988999999999999999999999999999999999999999999999
Q ss_pred cccccccCChhhHHHHHHHhhhc--CccCCeeEEeCCCCCccc----CCCCCCCCCCCCCCCCCCccCCcccccCCcccc
Q 013180 221 ADLRESTNDPLSRAVMHRLRKDY--GIEGGIPVVFSLEKPKAK----LLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGS 294 (448)
Q Consensus 221 ~di~~~~~dpl~~~~r~~l~~~~--g~~g~i~~v~s~e~p~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvlg~ 294 (448)
.||++|..|||++.+|++||+ . |+.-|+|||||.|+|.+. .++..+.+.+ . .......+.+|++++
T Consensus 167 ~DiskT~~DPLa~~vR~~LRk-~~~~~~~gi~vVfS~E~~~~P~~d~~~~~~~~~~~--~-----~~~~~c~~~~gs~~~ 238 (263)
T COG1179 167 ADISKTIQDPLAAKVRRKLRK-RFPKIKFGVPVVFSTENPVYPQADGSVCAIDATAE--S-----AKRLDCARGLGSATF 238 (263)
T ss_pred eechhhccCcHHHHHHHHHHH-hccCCccCCceEecCCCCCCCcccccccccchhhc--c-----chhhhhhcCCCcccc
Confidence 999999999999999999999 6 788889999999988532 1111111001 1 112223456899999
Q ss_pred hHHHHHHHHHHHHHHHHHcCCC
Q 013180 295 IPAIFGMVMASHVVTQLAERQV 316 (448)
Q Consensus 295 ~~~i~G~~~A~~vi~~l~g~~~ 316 (448)
+|++||+.+|++||+.|+.++.
T Consensus 239 Vta~fGl~~as~vv~~i~~~~~ 260 (263)
T COG1179 239 VTAVFGLVAASEVVKKILDKKA 260 (263)
T ss_pred cchHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999999998763
No 3
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=100.00 E-value=6.2e-53 Score=413.38 Aligned_cols=253 Identities=29% Similarity=0.463 Sum_probs=219.1
Q ss_pred cchhHHHHHHhhhhHhhcCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccC
Q 013180 57 LLKDEVVAEQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVG 136 (448)
Q Consensus 57 ~~~~e~~~e~~~Rq~~~~G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG 136 (448)
+++++. +||+||.++||+++|++|++++|+|+|+|||||++|++|+|+|||+|+|+|+|.|+.+|||||+++..+|||
T Consensus 5 ~~~~~~--~rf~R~~~L~G~e~~~kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG 82 (268)
T PRK15116 5 ISDAWR--QRFGGTARLYGEKALQLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVG 82 (268)
T ss_pred CCHHHH--HHHhhHHHHhCHHHHHHhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcC
Confidence 444444 899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhhhCCCceEEEEeccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCccCCC
Q 013180 137 TPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADPT 216 (448)
Q Consensus 137 ~~Kv~~~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~dpt 216 (448)
++|++++++++.++||+++|+++...+++++.++++..++|+||||+|++..+..|+++|+++++|+|+++|+|++.||+
T Consensus 83 ~~Kve~~~~rl~~INP~~~V~~i~~~i~~e~~~~ll~~~~D~VIdaiD~~~~k~~L~~~c~~~~ip~I~~gGag~k~dp~ 162 (268)
T PRK15116 83 LAKAEVMAERIRQINPECRVTVVDDFITPDNVAEYMSAGFSYVIDAIDSVRPKAALIAYCRRNKIPLVTTGGAGGQIDPT 162 (268)
T ss_pred hHHHHHHHHHHHhHCCCcEEEEEecccChhhHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEECCcccCCCCC
Confidence 99999999999999999999999888888888888865699999999999999999999999999999999999999999
Q ss_pred ceEEcccccccCChhhHHHHHHHhhhcCcc------CCeeEEeCCCCCcccCCCCCCCCCCCCCCCCCCccCCcccc-cC
Q 013180 217 RIRVADLRESTNDPLSRAVMHRLRKDYGIE------GGIPVVFSLEKPKAKLLPFTGPSGEDENPSDYQMVPGFRVR-II 289 (448)
Q Consensus 217 ~i~i~di~~~~~dpl~~~~r~~l~~~~g~~------g~i~~v~s~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 289 (448)
+++|.||+++..|||++.+|++||+.+|+. .+++||||.|.|.....+-.. .. .+..........|+ ..
T Consensus 163 ~~~~~di~~t~~~pla~~~R~~lr~~~~~~~~~~~~~~~~~v~S~E~~~~~~~~~~~--~~--~~~~~~~~~~~~c~~~~ 238 (268)
T PRK15116 163 QIQVVDLAKTIQDPLAAKLRERLKSDFGVVKNSKGKLGVDCVFSTEALVYPQADGSV--CA--MKSTAEGPKRMDCASGF 238 (268)
T ss_pred eEEEEeeecccCChHHHHHHHHHHHhhCCCcccCccCCeEEEeCCCcCCCCCccccc--cc--ccccccccccccCCCCC
Confidence 999999999999999999999999988986 579999999988653211000 00 00000001112232 44
Q ss_pred CcccchHHHHHHHHHHHHHHHHHcCC
Q 013180 290 PVLGSIPAIFGMVMASHVVTQLAERQ 315 (448)
Q Consensus 290 pvlg~~~~i~G~~~A~~vi~~l~g~~ 315 (448)
+++..+|++||+++|.+||+.|++.+
T Consensus 239 gs~~~v~~~~G~~~a~~vi~~l~~~~ 264 (268)
T PRK15116 239 GAATMVTATFGFVAVSHALKKMMAKA 264 (268)
T ss_pred CcceehhHHHHHHHHHHHHHHHHhhh
Confidence 77789999999999999999998653
No 4
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=100.00 E-value=1.4e-52 Score=403.92 Aligned_cols=231 Identities=44% Similarity=0.705 Sum_probs=207.9
Q ss_pred cCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCC
Q 013180 74 FGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPE 153 (448)
Q Consensus 74 ~G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~ 153 (448)
||+++|++|++++|+|+||||+||+++++|+|+|||+|+|+|+|.|+++|||||++++.+|+|++|+++++++|+++||+
T Consensus 1 ~G~e~~~~L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~ 80 (231)
T cd00755 1 YGEEGLEKLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPE 80 (231)
T ss_pred CCHHHHHHHhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEeccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCccCCCceEEcccccccCChhhH
Q 013180 154 CHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADPTRIRVADLRESTNDPLSR 233 (448)
Q Consensus 154 v~v~~~~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~dpt~i~i~di~~~~~dpl~~ 233 (448)
++|+++...+++++..+++..++|+||||+|++..+..|+++|+++++|+|+++|+|++.||++++|.||+++..|||++
T Consensus 81 ~~V~~~~~~i~~~~~~~l~~~~~D~VvdaiD~~~~k~~L~~~c~~~~ip~I~s~g~g~~~dp~~i~i~di~~t~~~pla~ 160 (231)
T cd00755 81 CEVDAVEEFLTPDNSEDLLGGDPDFVVDAIDSIRAKVALIAYCRKRKIPVISSMGAGGKLDPTRIRVADISKTSGDPLAR 160 (231)
T ss_pred cEEEEeeeecCHhHHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeCCcCCCCCCeEEEccEeccccCcHHH
Confidence 99999999999988888887669999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCccCCeeEEeCCCCCcccCCCCCCCCCCCCCCCCCCccCCcccccCCcccchHHHHHHHHHHHHH
Q 013180 234 AVMHRLRKDYGIEGGIPVVFSLEKPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGSIPAIFGMVMASHVV 308 (448)
Q Consensus 234 ~~r~~l~~~~g~~g~i~~v~s~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvlg~~~~i~G~~~A~~vi 308 (448)
.+|++||+ .|+..+++||||.|.|.....+.... +.. +.......+.+++..|+++.+|++||+++|++||
T Consensus 161 ~~R~~Lrk-~~~~~~~~~v~S~E~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~gs~~~vp~~~G~~~a~~vi 231 (231)
T cd00755 161 KVRKRLRK-RGIFFGVPVVYSTEPPDPPKADELVC--GDE-VGADAALQGLRRAGLGSASTVPAVFGLAIASEVI 231 (231)
T ss_pred HHHHHHHH-cCCCCCeEEEeCCCCCCCCccccccc--ccc-ccccccccCCCCCCCCcceechHHHHHHHHHhhC
Confidence 99999999 88877799999999987643322111 011 1222233456667889999999999999999985
No 5
>PRK08223 hypothetical protein; Validated
Probab=100.00 E-value=3.8e-47 Score=374.34 Aligned_cols=258 Identities=23% Similarity=0.283 Sum_probs=201.7
Q ss_pred HHHHhhhhHhhcCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHH
Q 013180 63 VAEQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALC 142 (448)
Q Consensus 63 ~~e~~~Rq~~~~G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~ 142 (448)
++|+|+||+.++|+++|+||++++|+||||||+||+++++|+++|||+|+|+|+|.|++||||||++++.+|||++|+++
T Consensus 6 ~~~~ysRq~~~iG~e~Q~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~ 85 (287)
T PRK08223 6 YDEAFCRNLGWITPTEQQRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEV 85 (287)
T ss_pred HHHHHhhhhhhcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHH
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCceEEEEeccCCccchHHHhcCCCCeEEEccCCH--HHHHHHHHHHHHcCCcEEEEcCCCCccCCCceEE
Q 013180 143 LKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNI--DTKVALLAACVRRGLKVLCATGAGARADPTRIRV 220 (448)
Q Consensus 143 ~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~VIda~Dn~--~~r~~l~~~c~~~~ip~I~~~g~G~k~dpt~i~i 220 (448)
++++++++||+++|++++..++++++.+++.+ +|+||||+||+ ++|+.+|++|+++++|+|+++.
T Consensus 86 a~~~l~~iNP~v~V~~~~~~l~~~n~~~ll~~-~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~~~------------ 152 (287)
T PRK08223 86 LAEMVRDINPELEIRAFPEGIGKENADAFLDG-VDVYVDGLDFFEFDARRLVFAACQQRGIPALTAAP------------ 152 (287)
T ss_pred HHHHHHHHCCCCEEEEEecccCccCHHHHHhC-CCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEEec------------
Confidence 99999999999999999999999999999986 99999999986 8999999999999999999874
Q ss_pred cccccccCChhhHHHHHHHhhhcCccCCeeEEeCCCCCcccCC-CCCC-CCCC--------CC--CCCCCCcc-----CC
Q 013180 221 ADLRESTNDPLSRAVMHRLRKDYGIEGGIPVVFSLEKPKAKLL-PFTG-PSGE--------DE--NPSDYQMV-----PG 283 (448)
Q Consensus 221 ~di~~~~~dpl~~~~r~~l~~~~g~~g~i~~v~s~e~p~~~~~-~~~~-~~~~--------~~--~~~~~~~~-----~~ 283 (448)
.|+.|++.+++ ++.||++|+ |.++ ...+ .. ++.+.+++ -+
T Consensus 153 ----------------------~g~~gqv~v~~-p~~p~~~~~f~~~~~~~~~~~~~~~~~~~~p~c~~~gvl~~~~~~~ 209 (287)
T PRK08223 153 ----------------------LGMGTALLVFD-PGGMSFDDYFDLSDGMNEVEKAVRFLAGLAPSMLHRGYLADPSRVD 209 (287)
T ss_pred ----------------------cCCeEEEEEEc-CCCCchhhhcCCCCCCCchhhhcccCCcCCCccccCCccccccccc
Confidence 45567665554 458999877 3311 1100 01 11112222 01
Q ss_pred cccccCCcccchHHHHHHHHHHHHHHHHHcCCCCCCccccccHHHHHHHHHHHhhhHHhhhCCCCccccCHHHHHHHHH
Q 013180 284 FRVRIIPVLGSIPAIFGMVMASHVVTQLAERQVQTEPIVNMDVDHYRLLHQRLTEHEESLYGTAKEVQVDVEEVMYVAK 362 (448)
Q Consensus 284 ~~~~~~pvlg~~~~i~G~~~A~~vi~~l~g~~~~~~~~~~~~~~~y~~~~~~l~~~~~~~~~~~~~~~i~~~DV~yLve 362 (448)
+.-+..|..|++|+++|++||.|+||.|+|.. +++...+.-+|+..-.++... ...+| .+-|++.--+.|+.+
T Consensus 210 ~~~~~~p~~g~~~g~~g~~~a~E~ik~l~g~g---~~~~~~~~~~~d~~~~~~~~~-~~~~g--~~~p~q~~~~~~~~~ 282 (287)
T PRK08223 210 LENRTGPSTGLACQLCAGVVATEVLKILLGRG---RVYAAPWFHQFDAYRSRYVRT-WRPGG--NRHPLQRLKRRLLRR 282 (287)
T ss_pred cccccCCCccchHHHHHHHHHHHHHHHHhCCC---CcCCCCeEEEEEcCCceEEEE-EecCC--CCCHHHHHHHHHHHH
Confidence 22234466699999999999999999999975 222111333333333333332 12234 467888877777654
No 6
>PRK07411 hypothetical protein; Validated
Probab=100.00 E-value=2e-44 Score=372.37 Aligned_cols=213 Identities=30% Similarity=0.455 Sum_probs=188.4
Q ss_pred ccchhHHHHHHhhhhHhh--cCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCC
Q 013180 56 DLLKDEVVAEQLTRNIQF--FGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRA 133 (448)
Q Consensus 56 ~~~~~e~~~e~~~Rq~~~--~G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~ 133 (448)
.+.+++. +||+||+.+ ||.++|++|++++|+||||||+||+++++|+++|||+|+|+|+|.|+.||||||++++.+
T Consensus 10 ~l~~~~~--~ry~Rq~~l~~~g~~~q~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~ 87 (390)
T PRK07411 10 QLSKDEY--ERYSRHLILPEVGLEGQKRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTS 87 (390)
T ss_pred cCCHHHH--HHhhceechhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChH
Confidence 4556665 899999998 999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCchHHHHHHHHHhhhCCCceEEEEeccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCcc
Q 013180 134 DVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARA 213 (448)
Q Consensus 134 dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~ 213 (448)
|||++||++++++|+++||+++|+++...++.++..+++.+ +|+||||+||+++|..||++|++.++|+|+++.
T Consensus 88 dvG~~Ka~~a~~~l~~~np~v~v~~~~~~~~~~~~~~~~~~-~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~----- 161 (390)
T PRK07411 88 WVGKPKIESAKNRILEINPYCQVDLYETRLSSENALDILAP-YDVVVDGTDNFPTRYLVNDACVLLNKPNVYGSI----- 161 (390)
T ss_pred HCCCcHHHHHHHHHHHHCCCCeEEEEecccCHHhHHHHHhC-CCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEE-----
Confidence 99999999999999999999999999999998888888886 999999999999999999999999999999875
Q ss_pred CCCceEEcccccccCChhhHHHHHHHhhhcCccCCeeEEeCCCCCcccCCCCCCCCCCCCCCCCCCccCCcccccCCccc
Q 013180 214 DPTRIRVADLRESTNDPLSRAVMHRLRKDYGIEGGIPVVFSLEKPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLG 293 (448)
Q Consensus 214 dpt~i~i~di~~~~~dpl~~~~r~~l~~~~g~~g~i~~v~s~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvlg 293 (448)
.|+.|++.++.+.++||++|+ ++... +. ...+ .|...||+|
T Consensus 162 -----------------------------~g~~g~~~v~~~~~~~c~~c~-~~~~~-~~------~~~~--~c~~~gvlg 202 (390)
T PRK07411 162 -----------------------------FRFEGQATVFNYEGGPNYRDL-YPEPP-PP------GMVP--SCAEGGVLG 202 (390)
T ss_pred -----------------------------ccCEEEEEEECCCCCCChHHh-cCCCC-Cc------ccCC--CCccCCcCc
Confidence 455676655545678999998 44321 00 1122 255779999
Q ss_pred chHHHHHHHHHHHHHHHHHcCC
Q 013180 294 SIPAIFGMVMASHVVTQLAERQ 315 (448)
Q Consensus 294 ~~~~i~G~~~A~~vi~~l~g~~ 315 (448)
|+++++|+++|+|+||+|+|.+
T Consensus 203 ~~~~~~g~~~a~eaik~l~g~~ 224 (390)
T PRK07411 203 ILPGIIGVIQATETIKIILGAG 224 (390)
T ss_pred chHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999974
No 7
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=100.00 E-value=3.2e-44 Score=349.38 Aligned_cols=211 Identities=28% Similarity=0.463 Sum_probs=184.5
Q ss_pred ccchhHHHHHHhhhhHhh--cCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCC
Q 013180 56 DLLKDEVVAEQLTRNIQF--FGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRA 133 (448)
Q Consensus 56 ~~~~~e~~~e~~~Rq~~~--~G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~ 133 (448)
++.++|+ +||+||+.+ ||.++|++|++++|+|||+||+||+++++|+++|||+|+|+|+|.|++|||+||++++.+
T Consensus 4 ~l~~~~~--~rY~Rqi~l~~~g~~~Q~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~ 81 (245)
T PRK05690 4 ELSDEEM--LRYNRQIILRGFDFDGQEKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDA 81 (245)
T ss_pred CCCHHHH--HHHHHhccchhcCHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChh
Confidence 4556665 899999986 999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCchHHHHHHHHHhhhCCCceEEEEeccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCcc
Q 013180 134 DVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARA 213 (448)
Q Consensus 134 dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~ 213 (448)
|||++|+++++++|+++||+++|+++...+++++..+++.+ +|+||||+||++++..++++|+++++|+|+++..
T Consensus 82 dvG~~Ka~~a~~~l~~lnp~v~i~~~~~~i~~~~~~~~~~~-~DiVi~~~D~~~~r~~ln~~~~~~~ip~v~~~~~---- 156 (245)
T PRK05690 82 TIGQPKVESARAALARINPHIAIETINARLDDDELAALIAG-HDLVLDCTDNVATRNQLNRACFAAKKPLVSGAAI---- 156 (245)
T ss_pred hCCChHHHHHHHHHHHHCCCCEEEEEeccCCHHHHHHHHhc-CCEEEecCCCHHHHHHHHHHHHHhCCEEEEeeec----
Confidence 99999999999999999999999999999988888888876 9999999999999999999999999999997643
Q ss_pred CCCceEEcccccccCChhhHHHHHHHhhhcCccCCeeEEeCCC-CCcccCCCCCCCCCCCCCCCCCCccCCcccccCCcc
Q 013180 214 DPTRIRVADLRESTNDPLSRAVMHRLRKDYGIEGGIPVVFSLE-KPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVL 292 (448)
Q Consensus 214 dpt~i~i~di~~~~~dpl~~~~r~~l~~~~g~~g~i~~v~s~e-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvl 292 (448)
|+.|++.++.+.. +||++|+ ++... +. +..+...||+
T Consensus 157 ------------------------------g~~G~v~~~~~~~~~~c~~c~-~~~~~--~~---------~~~~~~~gv~ 194 (245)
T PRK05690 157 ------------------------------RMEGQVTVFTYQDDEPCYRCL-SRLFG--EN---------ALTCVEAGVM 194 (245)
T ss_pred ------------------------------cCCceEEEEecCCCCceeeec-cCCCC--CC---------CCCcccCCcc
Confidence 4456565555443 6999997 33211 10 0134567999
Q ss_pred cchHHHHHHHHHHHHHHHHHcCC
Q 013180 293 GSIPAIFGMVMASHVVTQLAERQ 315 (448)
Q Consensus 293 g~~~~i~G~~~A~~vi~~l~g~~ 315 (448)
||+++++|+++|+|+|++|+|..
T Consensus 195 ~~~~~~~~~~~a~e~ik~l~g~~ 217 (245)
T PRK05690 195 APLVGVIGSLQAMEAIKLLTGYG 217 (245)
T ss_pred chHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999974
No 8
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=100.00 E-value=5.8e-44 Score=364.83 Aligned_cols=207 Identities=29% Similarity=0.413 Sum_probs=184.8
Q ss_pred HHHhhhhHhh--cCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHH
Q 013180 64 AEQLTRNIQF--FGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKAL 141 (448)
Q Consensus 64 ~e~~~Rq~~~--~G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~ 141 (448)
.+||+||+.+ ||.++|++|++++|+||||||+||+++++|+++|||+|+|+|+|.|++||||||++++.+|+|++|++
T Consensus 6 ~~rY~Rq~~l~~~g~~~q~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~ 85 (355)
T PRK05597 6 IARYRRQIMLGEIGQQGQQSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAE 85 (355)
T ss_pred HhHhhheechhhcCHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHH
Confidence 4899999999 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCceEEEEeccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCccCCCceEEc
Q 013180 142 CLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADPTRIRVA 221 (448)
Q Consensus 142 ~~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~dpt~i~i~ 221 (448)
+++++|+++||+++|+++...++.++..+++.+ +|+||||+||+.+|..++++|+++++|+|+++.
T Consensus 86 ~a~~~l~~~np~v~v~~~~~~i~~~~~~~~~~~-~DvVvd~~d~~~~r~~~n~~c~~~~ip~v~~~~------------- 151 (355)
T PRK05597 86 SAREAMLALNPDVKVTVSVRRLTWSNALDELRD-ADVILDGSDNFDTRHLASWAAARLGIPHVWASI------------- 151 (355)
T ss_pred HHHHHHHHHCCCcEEEEEEeecCHHHHHHHHhC-CCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEE-------------
Confidence 999999999999999999999998888888886 999999999999999999999999999999875
Q ss_pred ccccccCChhhHHHHHHHhhhcCccCCeeEEeCCCCCcccCCCCCCCCCCCCCCCCCCccCCcccccCCcccchHHHHHH
Q 013180 222 DLRESTNDPLSRAVMHRLRKDYGIEGGIPVVFSLEKPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGSIPAIFGM 301 (448)
Q Consensus 222 di~~~~~dpl~~~~r~~l~~~~g~~g~i~~v~s~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvlg~~~~i~G~ 301 (448)
.|+.|++.++.+.++||++|+ ++...... ..+ .|...||+||+++++|+
T Consensus 152 ---------------------~g~~g~v~~~~~~~~~~~~~~-~~~~~~~~-------~~~--~c~~~gv~g~~~~~~g~ 200 (355)
T PRK05597 152 ---------------------LGFDAQLSVFHAGHGPIYEDL-FPTPPPPG-------SVP--SCSQAGVLGPVVGVVGS 200 (355)
T ss_pred ---------------------ecCeEEEEEEcCCCCCCHHHh-CCCCCCcc-------CCC--CccccCcchhHHHHHHH
Confidence 456677766656678999987 43321000 111 24567999999999999
Q ss_pred HHHHHHHHHHHcCC
Q 013180 302 VMASHVVTQLAERQ 315 (448)
Q Consensus 302 ~~A~~vi~~l~g~~ 315 (448)
++|+|+||+|+|..
T Consensus 201 ~~a~e~ik~l~g~~ 214 (355)
T PRK05597 201 AMAMEALKLITGVG 214 (355)
T ss_pred HHHHHHHHHHhCCC
Confidence 99999999999964
No 9
>PRK08328 hypothetical protein; Provisional
Probab=100.00 E-value=1.1e-43 Score=342.90 Aligned_cols=206 Identities=28% Similarity=0.495 Sum_probs=183.2
Q ss_pred chhHHHHHHhhhhHhhcCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCc
Q 013180 58 LKDEVVAEQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGT 137 (448)
Q Consensus 58 ~~~e~~~e~~~Rq~~~~G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~ 137 (448)
.++|+ +||+||+.+||.++|++|++++|+|+||||+||+++++|+++|||+|+|+|+|.|+.||||||++++.+|+|+
T Consensus 3 ~~~~~--~ry~Rq~~~~g~~~q~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~ 80 (231)
T PRK08328 3 SEREL--ERYDRQIMIFGVEGQEKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGK 80 (231)
T ss_pred CHHHH--HHHhhHHHhcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCc
Confidence 34555 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -hHHHHHHHHHhhhCCCceEEEEeccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCccCCC
Q 013180 138 -PKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADPT 216 (448)
Q Consensus 138 -~Kv~~~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~dpt 216 (448)
+|+++++++++++||+++|+++...+++++..+++.+ +|+||||+||+++|..++++|+++++|+|+++..
T Consensus 81 ~~k~~~a~~~l~~~np~v~v~~~~~~~~~~~~~~~l~~-~D~Vid~~d~~~~r~~l~~~~~~~~ip~i~g~~~------- 152 (231)
T PRK08328 81 NPKPLSAKWKLERFNSDIKIETFVGRLSEENIDEVLKG-VDVIVDCLDNFETRYLLDDYAHKKGIPLVHGAVE------- 152 (231)
T ss_pred hHHHHHHHHHHHHhCCCCEEEEEeccCCHHHHHHHHhc-CCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeec-------
Confidence 6999999999999999999999988888888888875 9999999999999999999999999999998764
Q ss_pred ceEEcccccccCChhhHHHHHHHhhhcCccCCeeEEeCCCCCcccCCCCCCCCCCCCCCCCCCccCCcccccCCcccchH
Q 013180 217 RIRVADLRESTNDPLSRAVMHRLRKDYGIEGGIPVVFSLEKPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGSIP 296 (448)
Q Consensus 217 ~i~i~di~~~~~dpl~~~~r~~l~~~~g~~g~i~~v~s~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvlg~~~ 296 (448)
|+.|++.++.+.++||++|+ ++... + .....|++||++
T Consensus 153 ---------------------------g~~G~v~~~~p~~~~c~~~~-~~~~~-~-------------~~~~~~~~~~~~ 190 (231)
T PRK08328 153 ---------------------------GTYGQVTTIVPGKTKRLREI-FPKVK-K-------------KKGKFPILGATA 190 (231)
T ss_pred ---------------------------cCEEEEEEECCCCCCCHHHh-CCCCC-C-------------ccccCCcCchHH
Confidence 45566777777788998876 33211 0 012358999999
Q ss_pred HHHHHHHHHHHHHHHHcCC
Q 013180 297 AIFGMVMASHVVTQLAERQ 315 (448)
Q Consensus 297 ~i~G~~~A~~vi~~l~g~~ 315 (448)
+++|+++|+|+||+|+|.+
T Consensus 191 ~ii~~~~a~e~~k~l~g~~ 209 (231)
T PRK08328 191 GVIGSIQAMEVIKLITGYG 209 (231)
T ss_pred HHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999974
No 10
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=100.00 E-value=4e-43 Score=363.11 Aligned_cols=213 Identities=30% Similarity=0.442 Sum_probs=187.1
Q ss_pred ccchhHHHHHHhhhhHhh--cCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCC
Q 013180 56 DLLKDEVVAEQLTRNIQF--FGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRA 133 (448)
Q Consensus 56 ~~~~~e~~~e~~~Rq~~~--~G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~ 133 (448)
.+..+|+ +||+||+.+ ||.++|+||++++|+||||||+||++|++|+++|||+|+|+|+|.|+.+||+||++|+.+
T Consensus 14 ~l~~~~~--~ry~Rq~~l~~~g~~~q~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~ 91 (392)
T PRK07878 14 ELTRDEV--ARYSRHLIIPDVGVDGQKRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQS 91 (392)
T ss_pred CCCHHHH--HHhhheechhhcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChh
Confidence 4666776 999999988 999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCchHHHHHHHHHhhhCCCceEEEEeccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCcc
Q 013180 134 DVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARA 213 (448)
Q Consensus 134 dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~ 213 (448)
|||++|+++++++|+++||+++|+++...++.++..+++.+ +|+||||+||+.+|..+|++|+++++|+|+++.
T Consensus 92 diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~-~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~----- 165 (392)
T PRK07878 92 DVGRSKAQSARDSIVEINPLVNVRLHEFRLDPSNAVELFSQ-YDLILDGTDNFATRYLVNDAAVLAGKPYVWGSI----- 165 (392)
T ss_pred cCCChHHHHHHHHHHHhCCCcEEEEEeccCChhHHHHHHhc-CCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEe-----
Confidence 99999999999999999999999999999998888888876 999999999999999999999999999999875
Q ss_pred CCCceEEcccccccCChhhHHHHHHHhhhcCccCCeeEEeC----CCCCcccCCCCCCCCCCCCCCCCCCccCCcccccC
Q 013180 214 DPTRIRVADLRESTNDPLSRAVMHRLRKDYGIEGGIPVVFS----LEKPKAKLLPFTGPSGEDENPSDYQMVPGFRVRII 289 (448)
Q Consensus 214 dpt~i~i~di~~~~~dpl~~~~r~~l~~~~g~~g~i~~v~s----~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (448)
.|+.|++.++++ ..+||++|+ +++.. .. ...+ .|...
T Consensus 166 -----------------------------~g~~G~v~~~~~~~~~~~~~c~~c~-~~~~~-~~------~~~~--~~~~~ 206 (392)
T PRK07878 166 -----------------------------YRFEGQASVFWEDAPDGLGLNYRDL-YPEPP-PP------GMVP--SCAEG 206 (392)
T ss_pred -----------------------------ccCEEEEEEEecCCCCCCCCeeeee-cCCCC-Cc------cCCC--CCccC
Confidence 456676665553 257899997 33211 00 1122 24567
Q ss_pred CcccchHHHHHHHHHHHHHHHHHcCC
Q 013180 290 PVLGSIPAIFGMVMASHVVTQLAERQ 315 (448)
Q Consensus 290 pvlg~~~~i~G~~~A~~vi~~l~g~~ 315 (448)
||+||+++++|+++|+|+||+|+|.+
T Consensus 207 gv~g~~~~~~g~~~a~e~ik~l~g~~ 232 (392)
T PRK07878 207 GVLGVLCASIGSIMGTEAIKLITGIG 232 (392)
T ss_pred CccchHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999964
No 11
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=100.00 E-value=4.7e-43 Score=359.41 Aligned_cols=213 Identities=29% Similarity=0.439 Sum_probs=186.7
Q ss_pred ccchhHHHHHHhhhhHhh--cCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCC
Q 013180 56 DLLKDEVVAEQLTRNIQF--FGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRA 133 (448)
Q Consensus 56 ~~~~~e~~~e~~~Rq~~~--~G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~ 133 (448)
.+.++|. +||+||+.+ ||.++|++|++++|+|+||||+||+++++|+++|||+|+|+|+|.|++|||+||++|+.+
T Consensus 13 ~~~~~e~--~ry~Rqi~l~~~g~~~q~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~ 90 (370)
T PRK05600 13 QLPTSEL--RRTARQLALPGFGIEQQERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGAS 90 (370)
T ss_pred CCCHHHH--HHhhcccchhhhCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChh
Confidence 4556665 899999998 999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCchHHHHHHHHHhhhCCCceEEEEeccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCcc
Q 013180 134 DVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARA 213 (448)
Q Consensus 134 dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~ 213 (448)
|||++|+++++++|+++||+++|+++...++.++..+++.+ +|+||||+||+++|..+|++|+++++|+|+++.
T Consensus 91 diG~~Ka~~~~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~-~DlVid~~Dn~~~r~~in~~~~~~~iP~v~~~~----- 164 (370)
T PRK05600 91 DVGRPKVEVAAERLKEIQPDIRVNALRERLTAENAVELLNG-VDLVLDGSDSFATKFLVADAAEITGTPLVWGTV----- 164 (370)
T ss_pred HCCCHHHHHHHHHHHHHCCCCeeEEeeeecCHHHHHHHHhC-CCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEE-----
Confidence 99999999999999999999999999999998888888886 999999999999999999999999999999875
Q ss_pred CCCceEEcccccccCChhhHHHHHHHhhhcCccCCeeEEeCCC---CCcccCCCCCCCCCCCCCCCCCCccCCcccccCC
Q 013180 214 DPTRIRVADLRESTNDPLSRAVMHRLRKDYGIEGGIPVVFSLE---KPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIP 290 (448)
Q Consensus 214 dpt~i~i~di~~~~~dpl~~~~r~~l~~~~g~~g~i~~v~s~e---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 290 (448)
.|+.|++.++.+.. .||++|+ +++.. +. ...+ .|...|
T Consensus 165 -----------------------------~g~~G~v~v~~~~~~~~~~~~~~l-~~~~~-~~------~~~~--~c~~~g 205 (370)
T PRK05600 165 -----------------------------LRFHGELAVFNSGPDHRGVGLRDL-FPEQP-SG------DSIP--DCATAG 205 (370)
T ss_pred -----------------------------ecCEEEEEEEecCCCCCCCCcHhh-CCCCC-cc------ccCC--CCccCC
Confidence 45567666554432 5788877 43311 00 1122 245779
Q ss_pred cccchHHHHHHHHHHHHHHHHHcCC
Q 013180 291 VLGSIPAIFGMVMASHVVTQLAERQ 315 (448)
Q Consensus 291 vlg~~~~i~G~~~A~~vi~~l~g~~ 315 (448)
|+||+++++|+++|+|+||+|+|.+
T Consensus 206 vlg~~~~~ig~~~a~eaik~l~g~g 230 (370)
T PRK05600 206 VLGATTAVIGALMATEAIKFLTGIG 230 (370)
T ss_pred cchhHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999973
No 12
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=100.00 E-value=9.8e-43 Score=337.88 Aligned_cols=204 Identities=25% Similarity=0.436 Sum_probs=177.7
Q ss_pred HHhhhhHhhc--CHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHH
Q 013180 65 EQLTRNIQFF--GVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALC 142 (448)
Q Consensus 65 e~~~Rq~~~~--G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~ 142 (448)
+||+||+++| |.++|++|++++|+|+|+||+||+++++|+++|||+|+|+|+|.|+++|||||++++++|||++|+++
T Consensus 3 ~ry~Rq~~l~~~g~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~ 82 (240)
T TIGR02355 3 LRYNRQIILRGFDFDGQEALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVES 82 (240)
T ss_pred cceeeeeecccCCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHH
Confidence 7999999985 68999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCceEEEEeccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCccCCCceEEcc
Q 013180 143 LKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADPTRIRVAD 222 (448)
Q Consensus 143 ~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~dpt~i~i~d 222 (448)
++++|+++||+++|+++...++.++..+++.+ +|+||||+||+++|..++++|+++++|+|+++..|
T Consensus 83 a~~~l~~inp~v~i~~~~~~i~~~~~~~~~~~-~DlVvd~~D~~~~r~~ln~~~~~~~ip~v~~~~~g------------ 149 (240)
T TIGR02355 83 AKDALTQINPHIAINPINAKLDDAELAALIAE-HDIVVDCTDNVEVRNQLNRQCFAAKVPLVSGAAIR------------ 149 (240)
T ss_pred HHHHHHHHCCCcEEEEEeccCCHHHHHHHhhc-CCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEecc------------
Confidence 99999999999999999999988888888876 99999999999999999999999999999977543
Q ss_pred cccccCChhhHHHHHHHhhhcCccCCeeEE-eCCCCCcccCCCCCCCCCCCCCCCCCCccCCcccccCCcccchHHHHHH
Q 013180 223 LRESTNDPLSRAVMHRLRKDYGIEGGIPVV-FSLEKPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGSIPAIFGM 301 (448)
Q Consensus 223 i~~~~~dpl~~~~r~~l~~~~g~~g~i~~v-~s~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvlg~~~~i~G~ 301 (448)
+.|++.++ ++...||++|+. +. +.+.. ..+...|++||+++++|+
T Consensus 150 ----------------------~~G~v~~~~~~~~~~c~~C~~-~~--~~~~~---------~~~~~~gv~~p~~~~~~~ 195 (240)
T TIGR02355 150 ----------------------MEGQVSVFTYQDGEPCYRCLS-RL--FGENA---------LSCVEAGVMAPVVGVVGS 195 (240)
T ss_pred ----------------------cEeEEEEEecCCCCCcccccc-cc--CCCCC---------CCccccCccchHHHHHHH
Confidence 34544333 345578999872 11 00000 123456999999999999
Q ss_pred HHHHHHHHHHHcCC
Q 013180 302 VMASHVVTQLAERQ 315 (448)
Q Consensus 302 ~~A~~vi~~l~g~~ 315 (448)
++|+|+|++|+|.+
T Consensus 196 ~~a~e~ik~l~g~~ 209 (240)
T TIGR02355 196 LQAMEAIKVLAGIG 209 (240)
T ss_pred HHHHHHHHHHhCCC
Confidence 99999999999874
No 13
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=100.00 E-value=7.6e-43 Score=330.52 Aligned_cols=199 Identities=31% Similarity=0.476 Sum_probs=177.5
Q ss_pred HhhhhHhh--cCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHH
Q 013180 66 QLTRNIQF--FGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCL 143 (448)
Q Consensus 66 ~~~Rq~~~--~G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~ 143 (448)
||+||+++ ||.++|++|++++|+|+||||+||+++++|+++||++|+|+|+|.|+++||+||++|+++|+|++|++++
T Consensus 1 rY~Rqi~l~~~g~~~q~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~ 80 (202)
T TIGR02356 1 RYARQLLLPDIGEEGQQRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVA 80 (202)
T ss_pred CCcceecchhcCHHHHHHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHH
Confidence 69999998 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCceEEEEeccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCccCCCceEEccc
Q 013180 144 KKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADPTRIRVADL 223 (448)
Q Consensus 144 ~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~dpt~i~i~di 223 (448)
+++++++||+++++++...++.++..+++.+ +|+||+|+||++++..++++|+++++|+|+++..
T Consensus 81 ~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~-~D~Vi~~~d~~~~r~~l~~~~~~~~ip~i~~~~~-------------- 145 (202)
T TIGR02356 81 AQRLRELNSDIQVTALKERVTAENLELLINN-VDLVLDCTDNFATRYLINDACVALGTPLISAAVV-------------- 145 (202)
T ss_pred HHHHHHhCCCCEEEEehhcCCHHHHHHHHhC-CCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEec--------------
Confidence 9999999999999999998888888888875 9999999999999999999999999999998753
Q ss_pred ccccCChhhHHHHHHHhhhcCccCCeeEEeCC-CCCcccCCCCCCCCCCCCCCCCCCccCCcccccCCcccchHHHHHHH
Q 013180 224 RESTNDPLSRAVMHRLRKDYGIEGGIPVVFSL-EKPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGSIPAIFGMV 302 (448)
Q Consensus 224 ~~~~~dpl~~~~r~~l~~~~g~~g~i~~v~s~-e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvlg~~~~i~G~~ 302 (448)
|+.|++.++.+. ++||+.|+ +++. .+. .+ .+...|++||+++++|++
T Consensus 146 --------------------g~~G~~~~~~p~~~~~c~~c~-~~~~--~~~-------~~--~~~~~~~~~~~~~~~~~~ 193 (202)
T TIGR02356 146 --------------------GFGGQLMVFDPGGEGPCLRCL-FPDI--ADT-------GP--SCATAGVIGPVVGVIGSL 193 (202)
T ss_pred --------------------cCeEEEEEEeCCCCCCChhhc-CCCC--ccc-------CC--CCccCCccchHHHHHHHH
Confidence 455666666666 68999998 3331 111 11 135679999999999999
Q ss_pred HHHHHHHHH
Q 013180 303 MASHVVTQL 311 (448)
Q Consensus 303 ~A~~vi~~l 311 (448)
+|+|+||+|
T Consensus 194 ~a~e~~k~l 202 (202)
T TIGR02356 194 QALEALKLL 202 (202)
T ss_pred HHHHHHHhC
Confidence 999999975
No 14
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=100.00 E-value=1.2e-43 Score=347.83 Aligned_cols=217 Identities=29% Similarity=0.439 Sum_probs=193.8
Q ss_pred CCccccchhHHHHHHhhhhHhh--cCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCccccc
Q 013180 52 IPALDLLKDEVVAEQLTRNIQF--FGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAV 129 (448)
Q Consensus 52 ~~~~~~~~~e~~~e~~~Rq~~~--~G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l 129 (448)
+....+..+|+ .||+||+.+ ||..||.+|++++|+||||||+||+++.+|+.+|||+|.|||+|.||.|||+||.+
T Consensus 34 ~~~~~Ls~dei--~RYsRQlilpe~gV~GQ~~Lk~s~VLVVGaGGLGcPa~~YLaaaGvG~lGiVD~DvVe~sNlhRQVl 111 (427)
T KOG2017|consen 34 SREAGLSLDEI--LRYSRQLILPEFGVHGQLSLKNSSVLVVGAGGLGCPAAQYLAAAGVGRLGIVDYDVVELSNLHRQVL 111 (427)
T ss_pred ccccCCCHHHH--HhhhheeeccccccccccccCCccEEEEccCCCCCHHHHHHHHcCCCeecccccceeehhhHHHHHh
Confidence 34456888888 999999976 99999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccCchHHHHHHHHHhhhCCCceEEEEeccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCC
Q 013180 130 ATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGA 209 (448)
Q Consensus 130 ~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~ 209 (448)
++++.+|++|+++++..++++||.++|+.+.++++.+|+.+++.+ ||+|+|||||+.+|+.|+++|+..|+|+|++++
T Consensus 112 h~ea~vg~~Ka~sA~~~lr~lNs~v~v~~y~~~L~~sNa~~Ii~~-YdvVlDCTDN~~TRYLisD~CVlLgkpLVSgSa- 189 (427)
T KOG2017|consen 112 HTEARVGMHKAESAAAFLRRLNSHVEVQTYNEFLSSSNAFDIIKQ-YDVVLDCTDNVPTRYLISDVCVLLGKPLVSGSA- 189 (427)
T ss_pred hhhhhhhhHHHHHHHHHHHhcCCCceeeechhhccchhHHHHhhc-cceEEEcCCCccchhhhhhHHHHcCCccccccc-
Confidence 999999999999999999999999999999999999999999996 999999999999999999999999999999876
Q ss_pred CCccCCCceEEcccccccCChhhHHHHHHHhhhcCccCCeeEEeCCCCCcccCCCCCCCCCCCCCCCCCCccCCcccccC
Q 013180 210 GARADPTRIRVADLRESTNDPLSRAVMHRLRKDYGIEGGIPVVFSLEKPKAKLLPFTGPSGEDENPSDYQMVPGFRVRII 289 (448)
Q Consensus 210 G~k~dpt~i~i~di~~~~~dpl~~~~r~~l~~~~g~~g~i~~v~s~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (448)
.++.||+.+.--...|||+|+ ||.+.. | +.. .+|...
T Consensus 190 ---------------------------------Lr~EGQLtvYny~~GPCYRCl-FP~Ppp----~---~~v--t~C~dg 226 (427)
T KOG2017|consen 190 ---------------------------------LRWEGQLTVYNYNNGPCYRCL-FPNPPP----P---EAV--TNCADG 226 (427)
T ss_pred ---------------------------------ccccceeEEeecCCCceeeec-CCCCcC----h---HHh--cccccC
Confidence 456688765434678999998 544321 0 011 235667
Q ss_pred CcccchHHHHHHHHHHHHHHHHHcCC
Q 013180 290 PVLGSIPAIFGMVMASHVVTQLAERQ 315 (448)
Q Consensus 290 pvlg~~~~i~G~~~A~~vi~~l~g~~ 315 (448)
+|+||++|++|.|+|-|+||.++|..
T Consensus 227 GVlGpv~GviG~mQALE~iKli~~~~ 252 (427)
T KOG2017|consen 227 GVLGPVTGVIGCMQALETIKLIAGIG 252 (427)
T ss_pred ceeecchhhhhHHHHHHHHHHHHccC
Confidence 99999999999999999999999965
No 15
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=100.00 E-value=5.7e-42 Score=330.16 Aligned_cols=204 Identities=35% Similarity=0.521 Sum_probs=180.2
Q ss_pred HhhhhHhh--cCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHH
Q 013180 66 QLTRNIQF--FGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCL 143 (448)
Q Consensus 66 ~~~Rq~~~--~G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~ 143 (448)
||+||+++ ||.++|++|++++|+|+||||+||++|++|+++|||+|+|+|+|.|+++|||||++++.+|+|++|++++
T Consensus 1 rY~Rq~~l~~~g~~~q~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~ 80 (228)
T cd00757 1 RYSRQILLPEIGEEGQEKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAA 80 (228)
T ss_pred CcceeechhhcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHH
Confidence 69999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCceEEEEeccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCccCCCceEEccc
Q 013180 144 KKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADPTRIRVADL 223 (448)
Q Consensus 144 ~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~dpt~i~i~di 223 (448)
+++++++||+++|+.+...++.++..+++.+ +|+||+|+|+++++..++++|+++++|+|+++..
T Consensus 81 ~~~l~~~np~~~i~~~~~~i~~~~~~~~~~~-~DvVi~~~d~~~~r~~l~~~~~~~~ip~i~~g~~-------------- 145 (228)
T cd00757 81 AERLRAINPDVEIEAYNERLDAENAEELIAG-YDLVLDCTDNFATRYLINDACVKLGKPLVSGAVL-------------- 145 (228)
T ss_pred HHHHHHhCCCCEEEEecceeCHHHHHHHHhC-CCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEec--------------
Confidence 9999999999999999988888888888876 9999999999999999999999999999998653
Q ss_pred ccccCChhhHHHHHHHhhhcCccCCeeEEeCCCCCcccCCCCCCCCCCCCCCCCCCccCCcccccCCcccchHHHHHHHH
Q 013180 224 RESTNDPLSRAVMHRLRKDYGIEGGIPVVFSLEKPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGSIPAIFGMVM 303 (448)
Q Consensus 224 ~~~~~dpl~~~~r~~l~~~~g~~g~i~~v~s~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvlg~~~~i~G~~~ 303 (448)
|+.|.+.++.+.+++|+.|+ +.... +.+ .-.+...|+++|.++++|+++
T Consensus 146 --------------------g~~g~v~~~~p~~~~c~~c~-~~~~~-~~~---------~~~~~~~~~~~~~~~~~a~l~ 194 (228)
T cd00757 146 --------------------GFEGQVTVFIPGEGPCYRCL-FPEPP-PPG---------VPSCAEAGVLGPLVGVIGSLQ 194 (228)
T ss_pred --------------------cCEEEEEEECCCCCCCcccc-CCCCC-CCC---------CCccccCCcchhHHHHHHHHH
Confidence 34455555666778999987 32211 000 011345699999999999999
Q ss_pred HHHHHHHHHcCC
Q 013180 304 ASHVVTQLAERQ 315 (448)
Q Consensus 304 A~~vi~~l~g~~ 315 (448)
|+|+|++|+|.+
T Consensus 195 a~e~i~~l~g~~ 206 (228)
T cd00757 195 ALEALKILLGIG 206 (228)
T ss_pred HHHHHHHHhCCC
Confidence 999999999985
No 16
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=100.00 E-value=1.7e-41 Score=344.44 Aligned_cols=205 Identities=27% Similarity=0.402 Sum_probs=182.3
Q ss_pred HHHhhhhHhh--cCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCcc--CchH
Q 013180 64 AEQLTRNIQF--FGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADV--GTPK 139 (448)
Q Consensus 64 ~e~~~Rq~~~--~G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dv--G~~K 139 (448)
.+||+||+.+ ||.++|++|++++|+||||||+||++|++|+++|||+|+|||+|.|+++||+||++++.+|+ |++|
T Consensus 2 ~~rY~Rq~~l~~~G~~~Q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~K 81 (339)
T PRK07688 2 NERYSRQELFSPIGEEGQQKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPK 81 (339)
T ss_pred cchhhhhhchhhcCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcH
Confidence 4799999987 99999999999999999999999999999999999999999999999999999999999999 4699
Q ss_pred HHHHHHHHhhhCCCceEEEEeccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCccCCCceE
Q 013180 140 ALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADPTRIR 219 (448)
Q Consensus 140 v~~~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~dpt~i~ 219 (448)
+++++++++++||+++|+++...++.++..+++.+ +|+||||+||+.++..++++|+++++|+|+++..|
T Consensus 82 a~aa~~~l~~inp~v~v~~~~~~~~~~~~~~~~~~-~DlVid~~Dn~~~r~~ln~~~~~~~iP~i~~~~~g--------- 151 (339)
T PRK07688 82 AVAAKKRLEEINSDVRVEAIVQDVTAEELEELVTG-VDLIIDATDNFETRFIVNDAAQKYGIPWIYGACVG--------- 151 (339)
T ss_pred HHHHHHHHHHHCCCcEEEEEeccCCHHHHHHHHcC-CCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeeee---------
Confidence 99999999999999999999998988888888875 99999999999999999999999999999987543
Q ss_pred EcccccccCChhhHHHHHHHhhhcCccCCeeEEeCCCCCcccCCCCCCCCCCCCCCCCCCccCCcccccCCcccchHHHH
Q 013180 220 VADLRESTNDPLSRAVMHRLRKDYGIEGGIPVVFSLEKPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGSIPAIF 299 (448)
Q Consensus 220 i~di~~~~~dpl~~~~r~~l~~~~g~~g~i~~v~s~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvlg~~~~i~ 299 (448)
..|+.+++++.++||++|+ ++... . ++..|...+++||+++++
T Consensus 152 -------------------------~~G~~~~~~p~~~pC~~Cl-~~~~~------~-----~~~~c~~~gv~~p~~~~i 194 (339)
T PRK07688 152 -------------------------SYGLSYTIIPGKTPCLRCL-LQSIP------L-----GGATCDTAGIISPAVQIV 194 (339)
T ss_pred -------------------------eeeEEEEECCCCCCCeEee-cCCCC------C-----CCCCCccCCcccHHHHHH
Confidence 3455666777778999987 33211 0 012345679999999999
Q ss_pred HHHHHHHHHHHHHcCC
Q 013180 300 GMVMASHVVTQLAERQ 315 (448)
Q Consensus 300 G~~~A~~vi~~l~g~~ 315 (448)
|+++|+|+||+|+|.+
T Consensus 195 ~~~~a~ealk~l~g~~ 210 (339)
T PRK07688 195 ASYQVTEALKLLVGDY 210 (339)
T ss_pred HHHHHHHHHHHHhCCC
Confidence 9999999999999974
No 17
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=100.00 E-value=2e-41 Score=343.72 Aligned_cols=205 Identities=25% Similarity=0.361 Sum_probs=182.4
Q ss_pred HHHhhhhHhh--cCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccC--chH
Q 013180 64 AEQLTRNIQF--FGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVG--TPK 139 (448)
Q Consensus 64 ~e~~~Rq~~~--~G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG--~~K 139 (448)
.+||+||+++ ||+++|++|++++|+||||||+||++|++|+++|||+|+|||+|.|++|||+||++|+++|+| ++|
T Consensus 2 ~~rY~Rq~~~~~~G~~~Q~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~K 81 (338)
T PRK12475 2 QERYSRQILFSGIGEEGQRKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPK 81 (338)
T ss_pred cchhhhhhchhhcCHHHHHhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccH
Confidence 4799999987 899999999999999999999999999999999999999999999999999999999999985 899
Q ss_pred HHHHHHHHhhhCCCceEEEEeccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCccCCCceE
Q 013180 140 ALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADPTRIR 219 (448)
Q Consensus 140 v~~~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~dpt~i~ 219 (448)
|++++++++++||+++|+++...++.++.++++.+ +|+||||+||++++..+|++|+++++|+|+++..|
T Consensus 82 a~aa~~~l~~inp~v~i~~~~~~~~~~~~~~~~~~-~DlVid~~D~~~~r~~in~~~~~~~ip~i~~~~~g--------- 151 (338)
T PRK12475 82 AIAAKEHLRKINSEVEIVPVVTDVTVEELEELVKE-VDLIIDATDNFDTRLLINDLSQKYNIPWIYGGCVG--------- 151 (338)
T ss_pred HHHHHHHHHHHCCCcEEEEEeccCCHHHHHHHhcC-CCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEecc---------
Confidence 99999999999999999999988888888888875 99999999999999999999999999999987643
Q ss_pred EcccccccCChhhHHHHHHHhhhcCccCCeeEEeCCCCCcccCCCCCCCCCCCCCCCCCCccCCcccccCCcccchHHHH
Q 013180 220 VADLRESTNDPLSRAVMHRLRKDYGIEGGIPVVFSLEKPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGSIPAIF 299 (448)
Q Consensus 220 i~di~~~~~dpl~~~~r~~l~~~~g~~g~i~~v~s~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvlg~~~~i~ 299 (448)
..|.++++.+.++||++|+ ++... . .+..|...|++||+++++
T Consensus 152 -------------------------~~G~~~~~~P~~tpC~~Cl-~~~~p------~-----~~~~c~~~Gvl~p~v~~i 194 (338)
T PRK12475 152 -------------------------SYGVTYTIIPGKTPCLRCL-MEHVP------V-----GGATCDTAGIIQPAVQIV 194 (338)
T ss_pred -------------------------cEEEEEEECCCCCCCHHHh-cCCCC------C-----CCCCCccCCcCchHHHHH
Confidence 3455666777889999998 33211 0 112355779999999999
Q ss_pred HHHHHHHHHHHHHcCC
Q 013180 300 GMVMASHVVTQLAERQ 315 (448)
Q Consensus 300 G~~~A~~vi~~l~g~~ 315 (448)
|+++|+|+||+|+|..
T Consensus 195 aslqa~EalK~L~g~~ 210 (338)
T PRK12475 195 VAYQVTEALKILVEDF 210 (338)
T ss_pred HHHHHHHHHHHHhCCC
Confidence 9999999999999864
No 18
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=100.00 E-value=9.7e-40 Score=336.38 Aligned_cols=211 Identities=29% Similarity=0.473 Sum_probs=183.8
Q ss_pred chhHHHHHHhhhhHhh--cCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCcc
Q 013180 58 LKDEVVAEQLTRNIQF--FGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADV 135 (448)
Q Consensus 58 ~~~e~~~e~~~Rq~~~--~G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dv 135 (448)
..+++ ++|+||+.+ ||.++|++|++++|+|+||||+||+++++|+++|||+|+|+|+|.|+++||+||++++++||
T Consensus 109 s~~~~--~~y~r~i~l~~~g~~~q~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~di 186 (376)
T PRK08762 109 TDEQD--ERYSRHLRLPEVGEEGQRRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRV 186 (376)
T ss_pred CHHHH--HHHHHhcchhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhC
Confidence 34444 899999988 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHhhhCCCceEEEEeccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCccCC
Q 013180 136 GTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADP 215 (448)
Q Consensus 136 G~~Kv~~~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~dp 215 (448)
|++|+++++++++++||+++|+.+...++.++..+++.+ +|+||||+||+.+|..++++|+++++|+|+++..
T Consensus 187 G~~Ka~~~~~~l~~~np~v~v~~~~~~~~~~~~~~~~~~-~D~Vv~~~d~~~~r~~ln~~~~~~~ip~i~~~~~------ 259 (376)
T PRK08762 187 GQPKVDSAAQRLAALNPDVQVEAVQERVTSDNVEALLQD-VDVVVDGADNFPTRYLLNDACVKLGKPLVYGAVF------ 259 (376)
T ss_pred CCcHHHHHHHHHHHHCCCCEEEEEeccCChHHHHHHHhC-CCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEec------
Confidence 999999999999999999999999988888888888875 9999999999999999999999999999998753
Q ss_pred CceEEcccccccCChhhHHHHHHHhhhcCccCCeeEEeCCC----CCcccCCCCCCCCCCCCCCCCCCccCCcccccCCc
Q 013180 216 TRIRVADLRESTNDPLSRAVMHRLRKDYGIEGGIPVVFSLE----KPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPV 291 (448)
Q Consensus 216 t~i~i~di~~~~~dpl~~~~r~~l~~~~g~~g~i~~v~s~e----~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv 291 (448)
|+.|++.++.+.. +||++|+ ++.... + ...| .|...||
T Consensus 260 ----------------------------g~~g~v~~~~p~~~~~~~~c~~c~-~~~~~~----~---~~~~--~~~~~gv 301 (376)
T PRK08762 260 ----------------------------RFEGQVSVFDAGRQRGQAPCYRCL-FPEPPP----P---ELAP--SCAEAGV 301 (376)
T ss_pred ----------------------------cCEEEEEEEeCCCCCCCCCCHhhc-CCCCCC----c---ccCC--CCccCCc
Confidence 4445555555544 7899997 332110 0 1122 2557799
Q ss_pred ccchHHHHHHHHHHHHHHHHHcCC
Q 013180 292 LGSIPAIFGMVMASHVVTQLAERQ 315 (448)
Q Consensus 292 lg~~~~i~G~~~A~~vi~~l~g~~ 315 (448)
+||+|+++|+++|+|+||+|+|.+
T Consensus 302 ~g~~~~~~~~~~a~e~~k~l~g~~ 325 (376)
T PRK08762 302 LGVLPGVIGLLQATEAIKLLLGIG 325 (376)
T ss_pred chhhHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999974
No 19
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=100.00 E-value=8.7e-40 Score=308.46 Aligned_cols=177 Identities=23% Similarity=0.385 Sum_probs=160.5
Q ss_pred HHhhhhHhhcCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHH
Q 013180 65 EQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLK 144 (448)
Q Consensus 65 e~~~Rq~~~~G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~ 144 (448)
++|+||+++||.++|++|++++|+|+||||+||+++++|+++||++|+|+|+|.|+.+||+||++++.+|+|++|+++++
T Consensus 2 ~~Y~Rqi~l~G~e~Q~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~ 81 (197)
T cd01492 2 ALYDRQIRLWGLEAQKRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASL 81 (197)
T ss_pred chhhHHHHHhCHHHHHHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhCCCceEEEEeccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCccCCCceEEcccc
Q 013180 145 KHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADPTRIRVADLR 224 (448)
Q Consensus 145 ~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~dpt~i~i~di~ 224 (448)
++|+++||+++|+.+...++ ++..+++.+ +|+||+|+|+++++..++++|+++++|+|+++..|
T Consensus 82 ~~L~~lNp~v~i~~~~~~~~-~~~~~~~~~-~dvVi~~~~~~~~~~~ln~~c~~~~ip~i~~~~~G-------------- 145 (197)
T cd01492 82 ERLRALNPRVKVSVDTDDIS-EKPEEFFSQ-FDVVVATELSRAELVKINELCRKLGVKFYATGVHG-------------- 145 (197)
T ss_pred HHHHHHCCCCEEEEEecCcc-ccHHHHHhC-CCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEecC--------------
Confidence 99999999999999988777 345667765 99999999999999999999999999999988643
Q ss_pred cccCChhhHHHHHHHhhhcCccCCeeEEeCCCCCcccCCCCCCCCCCCCCCCCCCccCCcccccCCcccchHHHHHHHHH
Q 013180 225 ESTNDPLSRAVMHRLRKDYGIEGGIPVVFSLEKPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGSIPAIFGMVMA 304 (448)
Q Consensus 225 ~~~~dpl~~~~r~~l~~~~g~~g~i~~v~s~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvlg~~~~i~G~~~A 304 (448)
+.|.+.+. + +||.++++|+++|
T Consensus 146 --------------------~~G~v~~d-------------------------------~-------~~p~~~~~~~~~~ 167 (197)
T cd01492 146 --------------------LFGFVFAD-------------------------------L-------LAPVAAVVGGILA 167 (197)
T ss_pred --------------------CEEEEEEe-------------------------------c-------cccHHHHHHHHHH
Confidence 33422210 0 6888999999999
Q ss_pred HHHHHHHHcCC
Q 013180 305 SHVVTQLAERQ 315 (448)
Q Consensus 305 ~~vi~~l~g~~ 315 (448)
+|++|.|+|.+
T Consensus 168 ~e~~k~~~~~~ 178 (197)
T cd01492 168 QDVINALSKRE 178 (197)
T ss_pred HHHHHHHhCCC
Confidence 99999999975
No 20
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=100.00 E-value=1.4e-38 Score=300.46 Aligned_cols=143 Identities=20% Similarity=0.316 Sum_probs=134.7
Q ss_pred HhhhhHhhcCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccC--CccCchHHHHH
Q 013180 66 QLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATR--ADVGTPKALCL 143 (448)
Q Consensus 66 ~~~Rq~~~~G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~--~dvG~~Kv~~~ 143 (448)
+|+||+++||.++|++|++++|+||||||+||+++++|+++|||+|+|+|+|.|+.+||+||++++. +|+|++|++++
T Consensus 1 ~y~Rqi~l~G~~~q~~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~ 80 (198)
T cd01485 1 LYDRQIRLWGDEAQNKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAAS 80 (198)
T ss_pred CccceeeccCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHH
Confidence 5999999999999999999999999999999999999999999999999999999999999999988 89999999999
Q ss_pred HHHHhhhCCCceEEEEeccCC--ccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCC
Q 013180 144 KKHFSSIFPECHIDAKVLLYD--ASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGA 209 (448)
Q Consensus 144 ~~~l~~inP~v~v~~~~~~~~--~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~ 209 (448)
+++|+++||+++|+++....+ .++..+++.. +|+||+|.|+++.+..++++|+++++|+|+++..
T Consensus 81 ~~~L~~lNp~v~i~~~~~~~~~~~~~~~~~~~~-~dvVi~~~d~~~~~~~ln~~c~~~~ip~i~~~~~ 147 (198)
T cd01485 81 YEFLQELNPNVKLSIVEEDSLSNDSNIEEYLQK-FTLVIATEENYERTAKVNDVCRKHHIPFISCATY 147 (198)
T ss_pred HHHHHHHCCCCEEEEEecccccchhhHHHHHhC-CCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEee
Confidence 999999999999999988765 4556677775 9999999999999999999999999999998753
No 21
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=100.00 E-value=2.3e-37 Score=302.49 Aligned_cols=212 Identities=34% Similarity=0.524 Sum_probs=185.6
Q ss_pred chhHHHHHHhhhhHhh--cCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCcc
Q 013180 58 LKDEVVAEQLTRNIQF--FGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADV 135 (448)
Q Consensus 58 ~~~e~~~e~~~Rq~~~--~G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dv 135 (448)
.+.++ ++|+||+.+ +|.++|++|++++|+|+|+||+||+++++|+++|||+++|+|+|+|+.+||+||++|+.+|+
T Consensus 4 ~~~~~--~ry~Rqi~l~~~~~~~q~~l~~s~vlvvG~GglG~~~~~~la~aGvg~l~i~D~d~v~~snL~rq~~~~~~di 81 (254)
T COG0476 4 SDEEI--ERYSRQILLPGIGGEGQQKLKDSRVLVVGAGGLGSPAAKYLALAGVGKLTIVDFDTVELSNLQRQFLFTEADV 81 (254)
T ss_pred cHHHH--HhhcceeeecccCHHHHHHHhhCCEEEEecChhHHHHHHHHHHcCCCeEEEEcCCcccccccCceeeeccccc
Confidence 34444 999999998 55566999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHhhhCCCceEEEEeccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCccCC
Q 013180 136 GTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADP 215 (448)
Q Consensus 136 G~~Kv~~~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~dp 215 (448)
|++|+++++++++++||.++++++...++.+++.+++.. +|+|+||+||+++|+.+|++|+++++|+++++.
T Consensus 82 g~~Ka~~a~~~l~~ln~~v~v~~~~~~l~~~~~~~~~~~-~d~v~d~~dn~~~r~~iN~~~~~~~~pli~~~~------- 153 (254)
T COG0476 82 GKPKAEVAAKALRKLNPLVEVVAYLERLDEENAEELIAQ-FDVVLDCTDNFETRYLINDACVKLGIPLVHGGA------- 153 (254)
T ss_pred CCcHHHHHHHHHHHhCCCCeEEEeecccChhhHHHHhcc-CCEEEECCCCHHHHHHHHHHHHHhCCCeEeeee-------
Confidence 999999999999999999999999999999999888876 999999999999999999999999999999875
Q ss_pred CceEEcccccccCChhhHHHHHHHhhhcCccCCeeEEeCCC-CCcccCCCCCCCCCCCCCCCCCCccCCcccccCCcccc
Q 013180 216 TRIRVADLRESTNDPLSRAVMHRLRKDYGIEGGIPVVFSLE-KPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGS 294 (448)
Q Consensus 216 t~i~i~di~~~~~dpl~~~~r~~l~~~~g~~g~i~~v~s~e-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvlg~ 294 (448)
.|+.|++.++.+.+ .||++|+ ++........+ . .|...+|+|+
T Consensus 154 ---------------------------~~~~g~~~~~~~~~~~~c~~~~-~~~~~~~~~~~-------~-~c~~~gv~~~ 197 (254)
T COG0476 154 ---------------------------IGFEGQVTVIIPGDKTPCYRCL-FPEKPPPGLVP-------T-SCDEAGVLGP 197 (254)
T ss_pred ---------------------------ccceEEEEEEecCCCCCccccc-CCCCCCccccc-------c-ccccCCcccc
Confidence 45567777777774 8999987 33211111000 0 2567899999
Q ss_pred hHHHHHHHHHHHHHHHHHcCC
Q 013180 295 IPAIFGMVMASHVVTQLAERQ 315 (448)
Q Consensus 295 ~~~i~G~~~A~~vi~~l~g~~ 315 (448)
.++++|.++|.++++.++|.+
T Consensus 198 ~~~~~~~~~~~~~~k~~~g~~ 218 (254)
T COG0476 198 LVGVVGSLQALEAIKLLTGIG 218 (254)
T ss_pred ccchhhhHHHHHHHHHhcCCC
Confidence 999999999999999999986
No 22
>PRK07877 hypothetical protein; Provisional
Probab=100.00 E-value=6e-37 Score=334.83 Aligned_cols=274 Identities=24% Similarity=0.265 Sum_probs=210.3
Q ss_pred cchhHHHHHHhhhhHhhcCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCC-ceEEEEeCCccccCCCcccccccCCcc
Q 013180 57 LLKDEVVAEQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGV-GRLLLVDFDQVSVSSLNRHAVATRADV 135 (448)
Q Consensus 57 ~~~~e~~~e~~~Rq~~~~G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGV-g~i~LiD~D~V~~sNLnRq~l~~~~dv 135 (448)
+.++++.++||+||+.+||+++|++|++++|+||||| +||.+|.+|+++|| |+|+|+|+|.|++|||||| +|+..|+
T Consensus 80 ~~~~~~~~~r~~Rn~~~ig~~~Q~~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq-~~~~~di 157 (722)
T PRK07877 80 LGPREFRAVRLDRNRNKITAEEQERLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRV-PAGVFDL 157 (722)
T ss_pred CCHHHhhHHHhhchhhhCCHHHHHHHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccc-cCChhhc
Confidence 4578888999999999999999999999999999997 99999999999996 9999999999999999998 5899999
Q ss_pred CchHHHHHHHHHhhhCCCceEEEEeccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCccCC
Q 013180 136 GTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADP 215 (448)
Q Consensus 136 G~~Kv~~~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~dp 215 (448)
|++||++++++|+++||+++|+++...++++|.++++.+ +|+||||+||+++|+.||++|++++||+|++++.+++.||
T Consensus 158 G~~Kv~~a~~~l~~inp~i~v~~~~~~i~~~n~~~~l~~-~DlVvD~~D~~~~R~~ln~~a~~~~iP~i~~~~~~g~~~~ 236 (722)
T PRK07877 158 GVNKAVVAARRIAELDPYLPVEVFTDGLTEDNVDAFLDG-LDVVVEECDSLDVKVLLREAARARRIPVLMATSDRGLLDV 236 (722)
T ss_pred ccHHHHHHHHHHHHHCCCCEEEEEeccCCHHHHHHHhcC-CCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCcCc
Confidence 999999999999999999999999999999999999986 9999999999999999999999999999999999988888
Q ss_pred CceEEcccccccCChhhHHHHHHHhhhcCccCCeeEEeCCCCCcccCCCCCCCCC--------CCCCCCCCCc-------
Q 013180 216 TRIRVADLRESTNDPLSRAVMHRLRKDYGIEGGIPVVFSLEKPKAKLLPFTGPSG--------EDENPSDYQM------- 280 (448)
Q Consensus 216 t~i~i~di~~~~~dpl~~~~r~~l~~~~g~~g~i~~v~s~e~p~~~~~~~~~~~~--------~~~~~~~~~~------- 280 (448)
+++.+.. +.||+.|+ ++.... ++..|.-+..
T Consensus 237 e~~~~~p---------------------------------~~pc~~cl-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 282 (722)
T PRK07877 237 ERFDLEP---------------------------------DRPILHGL-LGDIDAAKLAGLSTKDKVPHVLRILDAEALS 282 (722)
T ss_pred ceeeeCC---------------------------------CCceeecc-CCCCChhhhccCChhccCcceeeeccccccC
Confidence 7664422 23333333 111000 0001110000
Q ss_pred --------cCCcccccCCcccchHHHHHHHHHHHHHHHHHcCCCCCCccccccHHHHHHHHHHHhhhHHhh-----hCCC
Q 013180 281 --------VPGFRVRIIPVLGSIPAIFGMVMASHVVTQLAERQVQTEPIVNMDVDHYRLLHQRLTEHEESL-----YGTA 347 (448)
Q Consensus 281 --------~~~~~~~~~pvlg~~~~i~G~~~A~~vi~~l~g~~~~~~~~~~~~~~~y~~~~~~l~~~~~~~-----~~~~ 347 (448)
-.+-.+..-|-|+....+-|++.|..+.++++|.+.....+.. +.+ ..+..+....... .+..
T Consensus 283 ~r~~~s~~~~~~~~~~~pql~~~~~~~~~~~~~~~~~i~l~~~~~sgr~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~ 358 (722)
T PRK07877 283 ARMAASLVEVDQTLSTWPQLASDVVLGAAAVAEAVRRIGLGEPLESGRVRV-DLD---ELLDRLDDPPPPPSGAGWEAES 358 (722)
T ss_pred HHHHHHHHhccCccccCCchHHHHHhhHHHHHHHHHHHHcCCcCCCCCEEe-cHH---HhhccccCCccccccccccccc
Confidence 0012234558888889999999999999999999877655543 332 2222222111111 1111
Q ss_pred ---------CccccCHHHHHHHHHHHhcCCCcC
Q 013180 348 ---------KEVQVDVEEVMYVAKELWHGRSAW 371 (448)
Q Consensus 348 ---------~~~~i~~~DV~yLveEvwrgrS~~ 371 (448)
.....+.+++..|++--...-|..
T Consensus 359 ~~~~~~~~~~~~~~~~~~l~~iv~aa~~APS~~ 391 (722)
T PRK07877 359 APPAPPADRAAEALPQDALEIVAAAAIRAPSGG 391 (722)
T ss_pred CCCCccccccccCCCHHHHHHHHHHHHhCcCcC
Confidence 111357889999999888777763
No 23
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=100.00 E-value=1.2e-36 Score=290.25 Aligned_cols=197 Identities=27% Similarity=0.333 Sum_probs=164.0
Q ss_pred hhhhHhhcCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHH
Q 013180 67 LTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKH 146 (448)
Q Consensus 67 ~~Rq~~~~G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~ 146 (448)
+.+....||.++|++|++++|+||||||+||+++++|+++||++|+|+|+|.|+.+||+||+++ .+|+|++|+++++++
T Consensus 11 ~~~~~~~~g~~~q~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~-~~dvG~~Ka~~a~~~ 89 (212)
T PRK08644 11 EAMLASRHTPKLLEKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYF-ISQIGMPKVEALKEN 89 (212)
T ss_pred HHHHHhhcCHHHHHHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEee-hhhCCChHHHHHHHH
Confidence 3344456999999999999999999999999999999999999999999999999999999865 789999999999999
Q ss_pred HhhhCCCceEEEEeccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHc-CCcEEEEcCCCCccCCCceEEccccc
Q 013180 147 FSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRR-GLKVLCATGAGARADPTRIRVADLRE 225 (448)
Q Consensus 147 l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~-~ip~I~~~g~G~k~dpt~i~i~di~~ 225 (448)
++++||+++++++...++.++..+++.+ +|+||||+||+++|..+++.|+++ ++|+|++++.++...+.
T Consensus 90 l~~lnp~v~v~~~~~~i~~~~~~~~~~~-~DvVI~a~D~~~~r~~l~~~~~~~~~~p~I~~~~~~~~~~~~--------- 159 (212)
T PRK08644 90 LLEINPFVEIEAHNEKIDEDNIEELFKD-CDIVVEAFDNAETKAMLVETVLEHPGKKLVAASGMAGYGDSN--------- 159 (212)
T ss_pred HHHHCCCCEEEEEeeecCHHHHHHHHcC-CCEEEECCCCHHHHHHHHHHHHHhCCCCEEEeehhhccCCce---------
Confidence 9999999999999999988888888875 999999999999999999999999 99999997766543221
Q ss_pred ccCChhhHHHHHHHhhhcCccCCeeEEeCCC--CCcccCCCCCCCCCCCCCCCCCCccCCcccccCCcccchHHHHHHHH
Q 013180 226 STNDPLSRAVMHRLRKDYGIEGGIPVVFSLE--KPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGSIPAIFGMVM 303 (448)
Q Consensus 226 ~~~dpl~~~~r~~l~~~~g~~g~i~~v~s~e--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvlg~~~~i~G~~~ 303 (448)
.+.+.+ .+|+ +.| +.. . ..+...|++||+++++|+++
T Consensus 160 -------------------------~~~~~~~~~~~~-~~~--~~~----~---------~~~~~~gv~~~~~~~i~~~~ 198 (212)
T PRK08644 160 -------------------------SIKTRRIGKNFY-IVG--DFV----T---------EAKPGNPLMAPRVNIAAAHQ 198 (212)
T ss_pred -------------------------EEEecCCCCCee-ECC--CCC----c---------ccCCCCCccchHHHHHHHHH
Confidence 122211 1222 111 100 0 01224589999999999999
Q ss_pred HHHHHHHHHcCC
Q 013180 304 ASHVVTQLAERQ 315 (448)
Q Consensus 304 A~~vi~~l~g~~ 315 (448)
|+|+||+|+|.+
T Consensus 199 a~ealk~l~~~~ 210 (212)
T PRK08644 199 ANLVLRLILGEE 210 (212)
T ss_pred HHHHHHHHhCCC
Confidence 999999999975
No 24
>PRK14851 hypothetical protein; Provisional
Probab=100.00 E-value=7.2e-36 Score=325.52 Aligned_cols=239 Identities=24% Similarity=0.345 Sum_probs=189.0
Q ss_pred chhHHHHHHhhhhHhhcCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCc
Q 013180 58 LKDEVVAEQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGT 137 (448)
Q Consensus 58 ~~~e~~~e~~~Rq~~~~G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~ 137 (448)
..++...++|+||+.+||.++|++|++++|+||||||+||+++++|+++|||+|+|+|+|.|++||||||++++.+|||+
T Consensus 17 ~~~~~~~~ry~R~~~l~g~e~Q~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~ 96 (679)
T PRK14851 17 SAAEYREAAFSRNIGLFTPGEQERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGR 96 (679)
T ss_pred CHHHHHHHHhhhhHHhcCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCC
Confidence 34566679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhhCCCceEEEEeccCCccchHHHhcCCCCeEEEccCC--HHHHHHHHHHHHHcCCcEEEEcCCCCcc--
Q 013180 138 PKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDN--IDTKVALLAACVRRGLKVLCATGAGARA-- 213 (448)
Q Consensus 138 ~Kv~~~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~VIda~Dn--~~~r~~l~~~c~~~~ip~I~~~g~G~k~-- 213 (448)
+|+++++++++++||.++|+++...++.++.++++.+ +|+||||+|+ +++|..|++.|++++||+|+++..|..+
T Consensus 97 ~Kv~v~~~~l~~inP~~~I~~~~~~i~~~n~~~~l~~-~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g~~G~~g~~ 175 (679)
T PRK14851 97 PKLAVMKEQALSINPFLEITPFPAGINADNMDAFLDG-VDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAGPLGYSSAM 175 (679)
T ss_pred HHHHHHHHHHHHhCCCCeEEEEecCCChHHHHHHHhC-CCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeecccccceE
Confidence 9999999999999999999999999999999999986 9999999997 5689999999999999999988766543
Q ss_pred ---CCCceEEcccccccCChhhHHHHHHHhhhcCccCCeeEEeCCCCCcccCCCCCCCCCCCCCCCCCCccCCcccccCC
Q 013180 214 ---DPTRIRVADLRESTNDPLSRAVMHRLRKDYGIEGGIPVVFSLEKPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIP 290 (448)
Q Consensus 214 ---dpt~i~i~di~~~~~dpl~~~~r~~l~~~~g~~g~i~~v~s~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 290 (448)
+|....+.+......| ....++-||...|+.- -|... . +- +.+.+ ++..+.-|
T Consensus 176 ~~~~p~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~p-~~~~~-------~---~~----------d~~~~-~l~~~~~~ 231 (679)
T PRK14851 176 LVFTPQGMGFDDYFNIGGK--MPEEQKYLRFAMGLAP-RPTHI-------K---YM----------DLSKV-DLKGGKGP 231 (679)
T ss_pred EEEcCCCCCHhHhccCCCC--CChHHHHHHHHhcCCC-cchhh-------c---cC----------cHhhc-CCccCcCC
Confidence 4544444444443332 2233444444333321 00000 0 00 11112 44445567
Q ss_pred cccchHHHHHHHHHHHHHHHHHcC-CCCCCcc
Q 013180 291 VLGSIPAIFGMVMASHVVTQLAER-QVQTEPI 321 (448)
Q Consensus 291 vlg~~~~i~G~~~A~~vi~~l~g~-~~~~~~~ 321 (448)
+++.-+....++.+.+++++|.|+ +..+.|.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 263 (679)
T PRK14851 232 SLNIACQLCSGMAGTEAVRIILGKGGLRPVPC 263 (679)
T ss_pred CccHHHHhhhhhHHHHHHHHhhcCCeeeccch
Confidence 778888888999999999999885 4445554
No 25
>PRK14852 hypothetical protein; Provisional
Probab=100.00 E-value=4.6e-36 Score=331.89 Aligned_cols=236 Identities=23% Similarity=0.282 Sum_probs=186.4
Q ss_pred chhHHHHHHhhhhHhhcCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCc
Q 013180 58 LKDEVVAEQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGT 137 (448)
Q Consensus 58 ~~~e~~~e~~~Rq~~~~G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~ 137 (448)
.-++...++|+||+.+||.++|+||++++|+||||||+||+++++|+++|||+|+|+|+|.|+.||||||++++.+|||+
T Consensus 306 ~~~~~~~~ry~Rqi~lig~e~Q~kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~ 385 (989)
T PRK14852 306 TRDAYTDIAFSRNLGLVDYAGQRRLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGR 385 (989)
T ss_pred HHHHHHHHHhhchHhhcCHHHHHHHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCC
Confidence 34666788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhhCCCceEEEEeccCCccchHHHhcCCCCeEEEccCCH--HHHHHHHHHHHHcCCcEEEEcCCCCccCC
Q 013180 138 PKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNI--DTKVALLAACVRRGLKVLCATGAGARADP 215 (448)
Q Consensus 138 ~Kv~~~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~VIda~Dn~--~~r~~l~~~c~~~~ip~I~~~g~G~k~dp 215 (448)
+|+++++++++++||+++|+++...+++++.++++.+ +|+||||+|++ +.+..+++.|++++||+|+++..|.
T Consensus 386 ~Kaevaa~~l~~INP~v~I~~~~~~I~~en~~~fl~~-~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~ag~~G~---- 460 (989)
T PRK14852 386 GKLDVMTERALSVNPFLDIRSFPEGVAAETIDAFLKD-VDLLVDGIDFFALDIRRRLFNRALELGIPVITAGPLGY---- 460 (989)
T ss_pred hHHHHHHHHHHHHCCCCeEEEEecCCCHHHHHHHhhC-CCEEEECCCCccHHHHHHHHHHHHHcCCCEEEeecccc----
Confidence 9999999999999999999999999999999999986 99999999985 5678889999999999999887554
Q ss_pred CceEEcccccccCChhhHHHHHHHhhhcCccCCeeEEeCCCCCcccCC-CCCCCCC-----------CCCCCCCCCcc--
Q 013180 216 TRIRVADLRESTNDPLSRAVMHRLRKDYGIEGGIPVVFSLEKPKAKLL-PFTGPSG-----------EDENPSDYQMV-- 281 (448)
Q Consensus 216 t~i~i~di~~~~~dpl~~~~r~~l~~~~g~~g~i~~v~s~e~p~~~~~-~~~~~~~-----------~~~~~~~~~~~-- 281 (448)
.|++.+ |.+..+|+.|+ ++++... ....|..+..+
T Consensus 461 ------------------------------~g~v~v-~~p~~~~~~~~f~~~~~~p~~~~~~~~~l~~~p~~~~~~~~~~ 509 (989)
T PRK14852 461 ------------------------------SCALLV-FMPGGMNFDSYFGIDDDTPPMEGYLRFGMGLAPRPAHLGYMDR 509 (989)
T ss_pred ------------------------------CeeEEE-EcCCCCCHHHhCCCCCCCchHhhhhhhhccCCcchhhhcccCc
Confidence 343332 22333555443 2211000 00001111111
Q ss_pred --CCcccccCCcccchHHHHHHHHHHHHHHHHHcC-CCCCCccccccHHHHH
Q 013180 282 --PGFRVRIIPVLGSIPAIFGMVMASHVVTQLAER-QVQTEPIVNMDVDHYR 330 (448)
Q Consensus 282 --~~~~~~~~pvlg~~~~i~G~~~A~~vi~~l~g~-~~~~~~~~~~~~~~y~ 330 (448)
-++..+.-|.++..+.+-++++|.+++|+++|+ +....|... .++.|.
T Consensus 510 ~~~~l~~~~~Ps~~~~~~l~a~~~~~~~~killg~~~~~~~p~~~-qfd~~~ 560 (989)
T PRK14852 510 RFVSLHDRRGPSLDIACHLCAGMAATEAVRILLHRRGIRPVPYFR-QFDPLT 560 (989)
T ss_pred ccccccccCCCchHHHHHHhHHHHHHHHHHHHhCCCccccCcchh-ccchhh
Confidence 023345679999999999999999999999997 334444332 444443
No 26
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=100.00 E-value=1.3e-35 Score=293.51 Aligned_cols=141 Identities=22% Similarity=0.321 Sum_probs=133.1
Q ss_pred HhhhhHhhcCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHH
Q 013180 66 QLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKK 145 (448)
Q Consensus 66 ~~~Rq~~~~G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~ 145 (448)
.|+||+++||.++|+||++++|+|+||||+|+++|++|+++||++|+|+|+|.|+.+||+||++++++|||++|++++++
T Consensus 1 lYsRQl~~~G~eaq~kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~ 80 (286)
T cd01491 1 LYSRQLYVLGHEAMKKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQA 80 (286)
T ss_pred CcccceeccCHHHHHHHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhCCCceEEEEeccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 013180 146 HFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGA 211 (448)
Q Consensus 146 ~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~ 211 (448)
+|+++||+++|+++...++. +++.. +|+||+|.|+++.+..+|++|+++++|+|+++..|.
T Consensus 81 ~L~eLNp~V~V~~~~~~~~~----~~l~~-fdvVV~~~~~~~~~~~in~~c~~~~ipfI~a~~~G~ 141 (286)
T cd01491 81 RLAELNPYVPVTVSTGPLTT----DELLK-FQVVVLTDASLEDQLKINEFCHSPGIKFISADTRGL 141 (286)
T ss_pred HHHHHCCCCEEEEEeccCCH----HHHhc-CCEEEEecCCHHHHHHHHHHHHHcCCEEEEEecccc
Confidence 99999999999998876443 45554 999999999999999999999999999999987765
No 27
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=100.00 E-value=1.3e-34 Score=287.00 Aligned_cols=227 Identities=21% Similarity=0.274 Sum_probs=167.9
Q ss_pred cEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccCCc
Q 013180 86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDA 165 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~~~ 165 (448)
||+||||||+||+++++|+++|||+|+|+|+|+|+.||||||+||+.+|||++|+++++++++++||+++|+++...+++
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~~ 80 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQD 80 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccCc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999888875
Q ss_pred cchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHc--------CCcEEEEcCCCCccCCCceEEcccccccC---ChhhHH
Q 013180 166 SSEEEILSGHPDFVLDCIDNIDTKVALLAACVRR--------GLKVLCATGAGARADPTRIRVADLRESTN---DPLSRA 234 (448)
Q Consensus 166 ~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~--------~ip~I~~~g~G~k~dpt~i~i~di~~~~~---dpl~~~ 234 (448)
.+ .+++.+ +|+||+|+||+++|.++++.|.+. ++|+|+++..|.++. .++.+++.+.++. |+.+..
T Consensus 81 ~~-~~f~~~-fdvVi~alDn~~aR~~in~~~~~~~~~~~~~~~iPlI~~gt~G~~G~-v~vi~P~~t~C~~C~~d~~p~~ 157 (291)
T cd01488 81 KD-EEFYRQ-FNIIICGLDSIEARRWINGTLVSLLLYEDPESIIPLIDGGTEGFKGH-ARVILPGITACIECSLDLFPPQ 157 (291)
T ss_pred hh-HHHhcC-CCEEEECCCCHHHHHHHHHHHHHhccccccccCccEEEEEEcccEEE-EEEEcCCCCCccccCCCCCCCC
Confidence 43 567765 999999999999999999988664 599999988776653 2455555544333 222221
Q ss_pred HHHHHh--------hhcCccCCeeEEeCCCCCcccCCCCCCCCC----CC---------CCCCCCCccCCcccccCCccc
Q 013180 235 VMHRLR--------KDYGIEGGIPVVFSLEKPKAKLLPFTGPSG----ED---------ENPSDYQMVPGFRVRIIPVLG 293 (448)
Q Consensus 235 ~r~~l~--------~~~g~~g~i~~v~s~e~p~~~~~~~~~~~~----~~---------~~~~~~~~~~~~~~~~~pvlg 293 (448)
....+. ..+.+.-...+.|+.|.|...+-+...+.. +. -....+....++..+++|+++
T Consensus 158 ~~~p~Cti~~~P~~~~hci~~a~~~~~~~~~~~~~~~~d~~~~~~~i~~~a~~ra~~f~i~~~~~~~~~~v~~~iiPai~ 237 (291)
T cd01488 158 VTFPLCTIANTPRLPEHCIEYASLIQWPKEFPFVPLDGDDPEHIEWLYQKALERAAQFNISGVTYSLTQGVVKRIIPAVA 237 (291)
T ss_pred CCCCcccccCCCCCcchheeeeeeeecccccCCCcCCCCCHHHHHHHHHHHHHHHHHcCCCcccHHHHhhhHheeeCccC
Confidence 111110 112222233344555544322211100000 00 001233456677889999999
Q ss_pred chHHHHHHHHHHHHHHHHHcCC
Q 013180 294 SIPAIFGMVMASHVVTQLAERQ 315 (448)
Q Consensus 294 ~~~~i~G~~~A~~vi~~l~g~~ 315 (448)
++++||++++++|++|.+++..
T Consensus 238 stnaiia~~~~~~~~k~~~~~~ 259 (291)
T cd01488 238 STNAIIAAACCLEALKIATDCY 259 (291)
T ss_pred chHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999854
No 28
>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family. Members of this protein family include enzymes related to SagC, a cyclodehydratase involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins. Note that this model does not find all possible examples of bacteriocin biosynthesis cyclodehydratases, an in particular misses the E. coli plasmid protein McbB of microcin B17 biosynthesis.
Probab=100.00 E-value=1.8e-34 Score=290.41 Aligned_cols=203 Identities=14% Similarity=0.065 Sum_probs=166.3
Q ss_pred cchhHHHHHHhhhhHhh---cC-HHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccC
Q 013180 57 LLKDEVVAEQLTRNIQF---FG-VESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATR 132 (448)
Q Consensus 57 ~~~~e~~~e~~~Rq~~~---~G-~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~ 132 (448)
+.++++ +||+||+.+ || +++|++|++++|+ |||+||.++.+|++ |||+|+|+|+|.|+.|||+ ++|+.
T Consensus 47 l~~~~~--~ry~r~l~l~~~~~~~~~Q~kL~~s~Vl---~GGLGs~va~~La~-GVg~L~ivD~D~Ve~SNL~--~L~~~ 118 (318)
T TIGR03603 47 LTKFNL--ITIIDNLTLKPMLIVEDYQKHLKKSKVL---LGKFGANIAYNLCN-NVGALFISDKTYFQETAEI--DLYSK 118 (318)
T ss_pred cCHHHH--HHHHHHhcCccccCcHHHHHHHhhCeee---cccchHHHHHHHhC-CCCEEEEEcCCEechhhHH--HHhCh
Confidence 445555 899999987 55 5689999999999 99999999999999 9999999999999999999 89999
Q ss_pred CccCchHHHHHHHHHhhhCCCceEEEEeccCCccchHHHhcCCCCeEEEccCCHHHHHH--HHHHHHHcCCcEEEEcCCC
Q 013180 133 ADVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVA--LLAACVRRGLKVLCATGAG 210 (448)
Q Consensus 133 ~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~--l~~~c~~~~ip~I~~~g~G 210 (448)
+|||++|+++++++|.++||.++|+. ..+++.+ +|+||||+||+.+|+. +|++|.++++|+|+++.
T Consensus 119 ~diG~~K~~~a~~~L~~lnp~v~i~~---------~~~li~~-~DlVid~tDn~~~r~L~~iN~ac~~~~~PlV~gav-- 186 (318)
T TIGR03603 119 EFILKKDIRDLTSNLDALELTKNVDE---------LKDLLKD-YNYIIICTEHSNISLLRGLNKLSKETKKPNTIAFI-- 186 (318)
T ss_pred hhcCcHHHHHHHHHHHHhCCCCEEee---------HHHHhCC-CCEEEECCCCccHhHHHHHHHHHHHHCCCEEEEEE--
Confidence 99999999999999999999999975 3466765 9999999999999976 99999999999998764
Q ss_pred CccCCCceEEcccccccCChhhHHHHHHHhhhcCccCCeeEEeCCCCCcccCCCCCCC-------CCCCCCCCCCCccCC
Q 013180 211 ARADPTRIRVADLRESTNDPLSRAVMHRLRKDYGIEGGIPVVFSLEKPKAKLLPFTGP-------SGEDENPSDYQMVPG 283 (448)
Q Consensus 211 ~k~dpt~i~i~di~~~~~dpl~~~~r~~l~~~~g~~g~i~~v~s~e~p~~~~~~~~~~-------~~~~~~~~~~~~~~~ 283 (448)
.|+.|++-+++++++||++|+ ++.. .+....+......
T Consensus 187 --------------------------------~g~~Gqv~~~~P~~t~C~~Cl-~~r~~~~~~~~~~~~~~~~~~~~~-- 231 (318)
T TIGR03603 187 --------------------------------DGPFVFITCTLPPETGCFECL-ERRLLSRLDWRLYGVFTEYLVKAE-- 231 (318)
T ss_pred --------------------------------ccCEEEEEEEeCCCCCcHHHc-cchhhcccccccccccccccCCCC--
Confidence 355566666777789999998 2200 0000000000001
Q ss_pred cccccCCcccchHHHHHHHHHHHHHHHHHcCC
Q 013180 284 FRVRIIPVLGSIPAIFGMVMASHVVTQLAERQ 315 (448)
Q Consensus 284 ~~~~~~pvlg~~~~i~G~~~A~~vi~~l~g~~ 315 (448)
-.+...||+||+++++|+++|+|++ .++|.+
T Consensus 232 ~~~~~~gv~gp~~giigsl~a~Eai-~i~g~g 262 (318)
T TIGR03603 232 NNVSTAELIFPLLNIKKNLVVSEIF-AIGSLG 262 (318)
T ss_pred CCCccCCeehhHHHHHHHHHHHHHH-HHhCCC
Confidence 1355679999999999999999999 998864
No 29
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=100.00 E-value=1.2e-32 Score=260.50 Aligned_cols=190 Identities=27% Similarity=0.360 Sum_probs=156.2
Q ss_pred hhcCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhC
Q 013180 72 QFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIF 151 (448)
Q Consensus 72 ~~~G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~in 151 (448)
..+|+++|++|++++|+|+||||+||++|++|+++||++|+|+|+|.|+++||+||+ |..+|+|++|+++++++++++|
T Consensus 9 ~~~~~~~q~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~-~~~~~iG~~Ka~~~~~~l~~in 87 (200)
T TIGR02354 9 ARHTPKIVQKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQ-YKASQVGEPKTEALKENISEIN 87 (200)
T ss_pred HhcCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEccccccccc-CChhhCCCHHHHHHHHHHHHHC
Confidence 357899999999999999999999999999999999999999999999999999997 5678999999999999999999
Q ss_pred CCceEEEEeccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHc--CCcEEEEcCCCCccCCCceEEcccccccCC
Q 013180 152 PECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRR--GLKVLCATGAGARADPTRIRVADLRESTND 229 (448)
Q Consensus 152 P~v~v~~~~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~--~ip~I~~~g~G~k~dpt~i~i~di~~~~~d 229 (448)
|.++++++...++.++..+++.+ +|+||+|+||+++|..+++.|.+. ..++++++|.++..++..+++
T Consensus 88 p~~~i~~~~~~i~~~~~~~~~~~-~DlVi~a~Dn~~~k~~l~~~~~~~~~~~~ii~~~g~~g~~~~~~~~~--------- 157 (200)
T TIGR02354 88 PYTEIEAYDEKITEENIDKFFKD-ADIVCEAFDNAEAKAMLVNAVLEKYKDKYLIAASGLAGYDDANSIKT--------- 157 (200)
T ss_pred CCCEEEEeeeeCCHhHHHHHhcC-CCEEEECCCCHHHHHHHHHHHHHHcCCCcEEEEeccccCCCCceEEe---------
Confidence 99999999999999888888875 999999999999999877666554 567788777766554332211
Q ss_pred hhhHHHHHHHhhhcCccCCeeEEeCCCCCcccCCCCCCCCCCCCCCCCCCccCCcccccCCcccchHHHHHHHHHHHHHH
Q 013180 230 PLSRAVMHRLRKDYGIEGGIPVVFSLEKPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGSIPAIFGMVMASHVVT 309 (448)
Q Consensus 230 pl~~~~r~~l~~~~g~~g~i~~v~s~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvlg~~~~i~G~~~A~~vi~ 309 (448)
.....+||.|-..+. + .+...|+++|.++++|+++|+++|+
T Consensus 158 -----------------------~~~~~~~~~~~~~~~---~-------------~~~~~g~~~p~v~~~a~~qa~~~l~ 198 (200)
T TIGR02354 158 -----------------------RKISKHFYLCGDGKS---D-------------AKQGLGLMAPRVQICAAHQANLVLE 198 (200)
T ss_pred -----------------------cccCCCEEEcCCCCC---c-------------ccCCCCCchhHHHHHHHHHHHHHHH
Confidence 112234555521110 0 1234599999999999999999998
Q ss_pred HH
Q 013180 310 QL 311 (448)
Q Consensus 310 ~l 311 (448)
++
T Consensus 199 ~~ 200 (200)
T TIGR02354 199 LI 200 (200)
T ss_pred hC
Confidence 74
No 30
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=100.00 E-value=2e-32 Score=308.78 Aligned_cols=203 Identities=21% Similarity=0.284 Sum_probs=172.1
Q ss_pred HHHhhhhHhhcCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCC-----ceEEEEeCCccccCCCcccccccCCccCch
Q 013180 64 AEQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGV-----GRLLLVDFDQVSVSSLNRHAVATRADVGTP 138 (448)
Q Consensus 64 ~e~~~Rq~~~~G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGV-----g~i~LiD~D~V~~sNLnRq~l~~~~dvG~~ 138 (448)
.+||+||+++||.++|++|++++|+||||||+||+++++|+++|| |+|+|+|+|.|+.||||||++|+.+|||++
T Consensus 399 ~~RYdrqi~l~G~~~Q~kL~~~kVlvvGaGGlG~e~lknLal~Gv~~~~~G~i~IvD~D~Ve~SNLnRQfLf~~~dIGk~ 478 (1008)
T TIGR01408 399 GDRYDAQIAVFGDTFQQKLQNLNIFLVGCGAIGCEMLKNFALMGVGTGKKGMITVTDPDLIEKSNLNRQFLFRPHHIGKP 478 (1008)
T ss_pred hhhhHHHHHHcCHHHHHHHhhCcEEEECCChHHHHHHHHHHHhCCCcCCCCeEEEECCCEecccccCcCcCCChhHcCcH
Confidence 489999999999999999999999999999999999999999999 899999999999999999999999999999
Q ss_pred HHHHHHHHHhhhCCCceEEEEeccCCccch----HHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCccC
Q 013180 139 KALCLKKHFSSIFPECHIDAKVLLYDASSE----EEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARAD 214 (448)
Q Consensus 139 Kv~~~~~~l~~inP~v~v~~~~~~~~~~~~----~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~d 214 (448)
|+++++++++++||+++|+++...+++++. .+++.+ +|+||+|+||+++|.++++.|+.+++|+|+++..
T Consensus 479 Ka~vaa~~l~~~Np~v~I~~~~~~v~~~~e~i~~~~f~~~-~dvVi~alDn~~aR~~vn~~c~~~~iPli~~gt~----- 552 (1008)
T TIGR01408 479 KSYTAADATLKINPQIKIDAHQNRVGPETETIFNDEFYEK-LDVVINALDNVEARRYVDSRCLAFLKPLLESGTL----- 552 (1008)
T ss_pred HHHHHHHHHHHHCCCCEEEEEEeecChhhhhhhhHHHhhC-CCEEEECCCCHHHHHHHHHHHHHcCCCEEEEecc-----
Confidence 999999999999999999999998876432 455654 9999999999999999999999999999998764
Q ss_pred CCceEEcccccccCChhhHHHHHHHhhhcCccCCeeEEeCCCCCcccCCCCCCCCCCCCCCCCCCccCCcccccCCcccc
Q 013180 215 PTRIRVADLRESTNDPLSRAVMHRLRKDYGIEGGIPVVFSLEKPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGS 294 (448)
Q Consensus 215 pt~i~i~di~~~~~dpl~~~~r~~l~~~~g~~g~i~~v~s~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvlg~ 294 (448)
|+.|++.++.+..+.|+.|-+.+. ++ .+|-|..+..|.
T Consensus 553 -----------------------------G~~G~v~v~ip~~te~y~~~~d~~---~~-------~~P~Ctl~~~P~--- 590 (1008)
T TIGR01408 553 -----------------------------GTKGNTQVVVPHLTESYGSSRDPP---EK-------EIPFCTLKSFPA--- 590 (1008)
T ss_pred -----------------------------CceeeEEEEeCCCcCCCCCCCCCC---CC-------CCCcccccCCCC---
Confidence 455667777776666777653221 11 245555555555
Q ss_pred hHHHHHHHHHHHHHHHHHcCC
Q 013180 295 IPAIFGMVMASHVVTQLAERQ 315 (448)
Q Consensus 295 ~~~i~G~~~A~~vi~~l~g~~ 315 (448)
.......+|.+....+++.+
T Consensus 591 -~~~h~i~wa~~~f~~~F~~~ 610 (1008)
T TIGR01408 591 -AIEHTIQWARDKFEGLFSHK 610 (1008)
T ss_pred -CchHHHHHHHHHHHHHHHhh
Confidence 34455667888888888865
No 31
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=100.00 E-value=3.1e-32 Score=252.27 Aligned_cols=171 Identities=29% Similarity=0.386 Sum_probs=143.7
Q ss_pred cEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccCCc
Q 013180 86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDA 165 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~~~ 165 (448)
+|+|+||||+||+++++|+++||++|+|+|+|.|+.+||+||++ ..+|+|++|+++++++++++||+++++++...++.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~-~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~ 79 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQY-FLSQIGEPKVEALKENLREINPFVKIEAINIKIDE 79 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccc-cHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecCh
Confidence 69999999999999999999999999999999999999999995 56899999999999999999999999999999988
Q ss_pred cchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHc-CCcEEEEcCCCCccCCCceEEcccccccCChhhHHHHHHHhhhcC
Q 013180 166 SSEEEILSGHPDFVLDCIDNIDTKVALLAACVRR-GLKVLCATGAGARADPTRIRVADLRESTNDPLSRAVMHRLRKDYG 244 (448)
Q Consensus 166 ~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~-~ip~I~~~g~G~k~dpt~i~i~di~~~~~dpl~~~~r~~l~~~~g 244 (448)
++..+++.+ +|+||+|+||+++|..+++.|.++ ++|+|++++.++.
T Consensus 80 ~~~~~~l~~-~DlVi~~~d~~~~r~~i~~~~~~~~~ip~i~~~~~~~~-------------------------------- 126 (174)
T cd01487 80 NNLEGLFGD-CDIVVEAFDNAETKAMLAESLLGNKNKPVVCASGMAGF-------------------------------- 126 (174)
T ss_pred hhHHHHhcC-CCEEEECCCCHHHHHHHHHHHHHHCCCCEEEEehhhcc--------------------------------
Confidence 888888886 999999999999999888877776 9999998876543
Q ss_pred ccCCeeEEeCCC--CCcccCCCCCCCCCCCCCCCCCCccCCcccccCCcccchHHHHHHHHHHHHH
Q 013180 245 IEGGIPVVFSLE--KPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGSIPAIFGMVMASHVV 308 (448)
Q Consensus 245 ~~g~i~~v~s~e--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvlg~~~~i~G~~~A~~vi 308 (448)
+++..+.+.+ .+|+.|++...+ .+...|++||+++++|+++|+|+|
T Consensus 127 --~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~g~~~~~~~~~~~~~~~e~~ 174 (174)
T cd01487 127 --GDSNNIKTKKISDNFYICGDLVNE----------------AKEGLGLMAPRVNICAAHQANLVL 174 (174)
T ss_pred --CCeEEEEecCCCCCeEEeecCCCC----------------CCCCcCccccHHHHHHHHHHHhhC
Confidence 2222222222 467777621110 023569999999999999999985
No 32
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=100.00 E-value=1.1e-31 Score=259.09 Aligned_cols=211 Identities=19% Similarity=0.260 Sum_probs=162.0
Q ss_pred cEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccCCc
Q 013180 86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDA 165 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~~~ 165 (448)
||+|||+||+||+++++|+++|||+|+|+|+|.|++||||||++|+.+|||++|+++++++++++||+++|+++...+++
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~~ 80 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVGP 80 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCCh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999888754
Q ss_pred cc--hHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCccCCCceEEcccccccCChhhHHHHHHHhhhc
Q 013180 166 SS--EEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADPTRIRVADLRESTNDPLSRAVMHRLRKDY 243 (448)
Q Consensus 166 ~~--~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~dpt~i~i~di~~~~~dpl~~~~r~~l~~~~ 243 (448)
++ ..+++.+ +|+||+|+||+++|..++++|+++++|+|+++. .
T Consensus 81 ~~~~~~~f~~~-~DvVi~a~Dn~~aR~~ln~~c~~~~iplI~~g~----------------------------------~ 125 (234)
T cd01484 81 EQDFNDTFFEQ-FHIIVNALDNIIARRYVNGMLIFLIVPLIESGT----------------------------------E 125 (234)
T ss_pred hhhchHHHHhC-CCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcc----------------------------------c
Confidence 32 2456665 999999999999999999999999999999875 4
Q ss_pred CccCCeeEEeCCCCCcccCCCCCCCCCCCCCCCCCCccCCcccccCCcccchHHHHHHHHHHHHHHHHHcCCCCCCcccc
Q 013180 244 GIEGGIPVVFSLEKPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGSIPAIFGMVMASHVVTQLAERQVQTEPIVN 323 (448)
Q Consensus 244 g~~g~i~~v~s~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvlg~~~~i~G~~~A~~vi~~l~g~~~~~~~~~~ 323 (448)
|+.|++.++.+..++|+.|.+.+.+ + .+|.+..+..|.. .......|.++.-
T Consensus 126 G~~G~v~vi~p~~t~c~~C~~~~~~---~-------~~p~Cti~~~P~~----~~hci~~a~~~~~-------------- 177 (234)
T cd01484 126 GFKGNAQVILPGMTECIECTLYPPQ---K-------NFPMCTIASMPRL----PEHCIEWARMLQW-------------- 177 (234)
T ss_pred CCceEEEEEcCCCCCCcccCCCCCC---C-------CCCccccCCCCCC----chHHHHHHHHHHh--------------
Confidence 5567777788888899999853221 1 2455555555653 3334445555442
Q ss_pred ccHHHHHHHHHHHhhhHHhhhCCCCccccCHHHHHHHHHH
Q 013180 324 MDVDHYRLLHQRLTEHEESLYGTAKEVQVDVEEVMYVAKE 363 (448)
Q Consensus 324 ~~~~~y~~~~~~l~~~~~~~~~~~~~~~i~~~DV~yLveE 363 (448)
-+..+.+.++..=..+ .+.|+.. +++..++.-++..
T Consensus 178 d~~~~~~~i~~~a~~r-a~~~~i~---~~~~~~~~~i~~~ 213 (234)
T cd01484 178 DDPEHIQFIFQASNER-ASQYNIR---GVTYFLTKGVAGR 213 (234)
T ss_pred CCHHHHHHHHHHHHHH-HHHcCCC---CcCHHHHHHHhcC
Confidence 1444555555544443 2234442 3566666666543
No 33
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=100.00 E-value=5.2e-32 Score=288.53 Aligned_cols=208 Identities=20% Similarity=0.223 Sum_probs=159.4
Q ss_pred cCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCcc---CchHHHHHHHHHhhh
Q 013180 74 FGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADV---GTPKALCLKKHFSSI 150 (448)
Q Consensus 74 ~G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dv---G~~Kv~~~~~~l~~i 150 (448)
+.+-+.++|++++|+||||||+||++|++|+++|||+|+|||+|.|+.||||||++|+.+|+ |++||++++++|+++
T Consensus 328 lP~l~~ekL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~Lk~I 407 (664)
T TIGR01381 328 HPDLQLERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGKVSYSNPVRQSLSNFEDCLLGGRGKAETAQKALKRI 407 (664)
T ss_pred CChhhHHHHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEECCCccccccccchhhhhhcCCcHHHHHHHHHHHH
Confidence 44556699999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred CCCceEEEEeccC-------Cc----------cchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCcc
Q 013180 151 FPECHIDAKVLLY-------DA----------SSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARA 213 (448)
Q Consensus 151 nP~v~v~~~~~~~-------~~----------~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~ 213 (448)
||+++++.+...+ ++ +++.+++.+ +|+|+||+||+++|..++.+|..+++|+|+++ .|..+
T Consensus 408 nP~v~i~~~~~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li~~-~DvV~d~tDn~esR~L~n~~c~~~~kplI~aA-lGfdg 485 (664)
T TIGR01381 408 FPSIQATGHRLTVPMPGHPIDEKDVPELEKDIARLEQLIKD-HDVVFLLLDSREARWLPTVLCSRHKKIAISAA-LGFDS 485 (664)
T ss_pred CCCcEEEEeeeeeccccccCCchhhhhccccHHHHHHHHhh-CCEEEECCCCHHHHHHHHHHHHHhCCCEEEEE-eccce
Confidence 9999999987763 43 356677775 99999999999999999999999999999974 44311
Q ss_pred CCCceEEcccccccCChhhHHHHHHHhhhcCccCC----e----eEEeCCCCCcccCCCCCCCCCCCCCCCCCCccCCcc
Q 013180 214 DPTRIRVADLRESTNDPLSRAVMHRLRKDYGIEGG----I----PVVFSLEKPKAKLLPFTGPSGEDENPSDYQMVPGFR 285 (448)
Q Consensus 214 dpt~i~i~di~~~~~dpl~~~~r~~l~~~~g~~g~----i----~~v~s~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (448)
.+.+- +|...+ - ...-....+||.|.....+.... .+. .+ |..
T Consensus 486 ---~lvmr---------------------hG~~~~~~~~~~~~~~~~~~~~~gCYfC~Dv~aP~~s~---~~r-tl-Dqq 536 (664)
T TIGR01381 486 ---YVVMR---------------------HGIGRSESVSDVSSSDSVPYSRLGCYFCNDVTAPGDST---TDR-TL-DQQ 536 (664)
T ss_pred ---EEEEE---------------------ecccccccccccccccccCCCCCCccccCCCCCCCccc---ccc-cc-ccc
Confidence 11110 111100 0 00001246788887332221110 000 11 112
Q ss_pred cccCCcccchHHHHHHHHHHHHHHHHHcCC
Q 013180 286 VRIIPVLGSIPAIFGMVMASHVVTQLAERQ 315 (448)
Q Consensus 286 ~~~~pvlg~~~~i~G~~~A~~vi~~l~g~~ 315 (448)
|. |++|..+++|+++|.|+|+.|+..|
T Consensus 537 Ct---VtrPgv~~ias~~AvEll~~llqhp 563 (664)
T TIGR01381 537 CT---VTRPGTAMIASGLAVELLVSVLQHP 563 (664)
T ss_pred ce---EecchHHHHHHHHHHHHHHHHhcCC
Confidence 32 8999999999999999999999987
No 34
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=99.97 E-value=1.9e-31 Score=266.96 Aligned_cols=128 Identities=24% Similarity=0.412 Sum_probs=118.6
Q ss_pred cEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccCCc
Q 013180 86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDA 165 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~~~ 165 (448)
+|+|||+||+||+++++|+++|||+|+|+|+|.|+.+||+||++++.+|||++|+++++++++++||+++|+++...++.
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~~ 80 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIKD 80 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999888776
Q ss_pred cc-hHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCccC
Q 013180 166 SS-EEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARAD 214 (448)
Q Consensus 166 ~~-~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~d 214 (448)
.. ..+++.+ +|+||+|.||.++|..++++|+.+++|+|+++..|.++.
T Consensus 81 ~~~~~~f~~~-~DvVv~a~Dn~~ar~~in~~c~~~~ip~I~~gt~G~~G~ 129 (312)
T cd01489 81 PDFNVEFFKQ-FDLVFNALDNLAARRHVNKMCLAADVPLIESGTTGFLGQ 129 (312)
T ss_pred ccchHHHHhc-CCEEEECCCCHHHHHHHHHHHHHCCCCEEEEecCcceeE
Confidence 33 3467765 999999999999999999999999999999987776443
No 35
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.3e-31 Score=272.11 Aligned_cols=315 Identities=19% Similarity=0.246 Sum_probs=221.7
Q ss_pred HHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceE
Q 013180 77 ESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHI 156 (448)
Q Consensus 77 ~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v 156 (448)
+-++.++++||+||||||+||+++++|+++|+++|+|||.|+|++|||||||||+.+|||++|+.++++.++++||.+++
T Consensus 5 ~~~eai~~~riLvVGaGGIGCELLKnLal~gf~~IhiIDlDTIDlSNLNRQFLFrkkhVgqsKA~vA~~~v~~Fnpn~~l 84 (603)
T KOG2013|consen 5 EKHEAIKSGRILVVGAGGIGCELLKNLALTGFEEIHIIDLDTIDLSNLNRQFLFRKKHVGQSKATVAAKAVKQFNPNIKL 84 (603)
T ss_pred HHHHHhccCeEEEEecCcccHHHHHHHHHhcCCeeEEEeccceeccchhhhheeehhhcCchHHHHHHHHHHHhCCCCce
Confidence 44678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccCCccc-hHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCccCCCceEEcccccccCChhhHHH
Q 013180 157 DAKVLLYDASS-EEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADPTRIRVADLRESTNDPLSRAV 235 (448)
Q Consensus 157 ~~~~~~~~~~~-~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~dpt~i~i~di~~~~~dpl~~~~ 235 (448)
.++...+.+.. .-+++. +||+|++|.||.++|.++|+.|.....|+|.+|.
T Consensus 85 ~~yhanI~e~~fnv~ff~-qfdiV~NaLDNlaAR~yVNr~C~~a~vPLIesGt--------------------------- 136 (603)
T KOG2013|consen 85 VPYHANIKEPKFNVEFFR-QFDIVLNALDNLAARRYVNRMCLAASVPLIESGT--------------------------- 136 (603)
T ss_pred EeccccccCcchHHHHHH-HHHHHHHhhccHHHHHHHHHHHHhhcCCceecCc---------------------------
Confidence 99988876553 344554 5999999999999999999999999999999875
Q ss_pred HHHHhhhcCccCCeeEEeCCCCCcccCCCCCCCCCCCCCCCCCCccCCcccccCCcccchHHHHHHHHHH-HHHHHHHcC
Q 013180 236 MHRLRKDYGIEGGIPVVFSLEKPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGSIPAIFGMVMAS-HVVTQLAER 314 (448)
Q Consensus 236 r~~l~~~~g~~g~i~~v~s~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvlg~~~~i~G~~~A~-~vi~~l~g~ 314 (448)
.|+.||+.++..+.+-|+.|.|-+. |. .+|.|.+|..|+ .-+...++|. +++..|+|.
T Consensus 137 -------~Gf~GQv~~ii~GkTECyeC~pK~~-------~k---TypvCTIRstPS----~~iHCIVWAK~~lF~qlF~~ 195 (603)
T KOG2013|consen 137 -------GGFLGQVQVIIKGKTECYECIPKPV-------PK---TYPVCTIRSTPS----EPIHCIVWAKHYLFNQLFGE 195 (603)
T ss_pred -------ccccceEEEEecCCcceecccCCCC-------CC---cCCceEeecCCC----CceeeeeehHhHHHHHHhcc
Confidence 4677899888888888999986432 22 478888887777 5666777777 899999986
Q ss_pred CCC--CCccccccHHHHHHH----HHH------HhhhHHh----hhCCC---Ccc--ccCHHHHHHH--HHHHhcCCCcC
Q 013180 315 QVQ--TEPIVNMDVDHYRLL----HQR------LTEHEES----LYGTA---KEV--QVDVEEVMYV--AKELWHGRSAW 371 (448)
Q Consensus 315 ~~~--~~~~~~~~~~~y~~~----~~~------l~~~~~~----~~~~~---~~~--~i~~~DV~yL--veEvwrgrS~~ 371 (448)
.-+ +....+.+.+.-+.. ... +..+.+. ..+.+ .++ -+=..||.|| ++++|+-||.=
T Consensus 196 d~~~q~~~~d~~d~d~~e~~t~~~~~~~~et~d~~Er~~~i~~~~~~~~~~~~~i~~klF~~dI~yl~~~e~~wk~r~~p 275 (603)
T KOG2013|consen 196 DDDDQYGRHDNADPDNCEDMTEEEAEAFRETEDLKERRESIVEIDKNLDFGPFKIFNKLFIYDIEYLLGMEALWKPRSRP 275 (603)
T ss_pred ccccccccccccCchhhhccChhhhhhhccchHHHHHHHHHHHHhhccCCChhhhhhHHHHHHHHHHHhhhhhccCCCCC
Confidence 322 111111121111111 000 1111000 01110 111 1234688888 57999999864
Q ss_pred CCCc----cccccccccccCceEEeecC-CCCCCCCCcEEEeCHHHHHHHhccC---ch----hhhcchhHHHHHHHHHH
Q 013180 372 EHSA----KDVGRGMWRSVNELMLVRWD-REKPATVSNLVLLKFKEADEHESRT---LD----DIKEKEPAFFERVTSVL 439 (448)
Q Consensus 372 s~~~----~~~~~~~~~~~~~L~l~RWd-~~~p~~~~Nlvllt~~Ea~~He~~~---~~----~~~~~~~~~~~~v~~~~ 439 (448)
.+.. ..++...-.|.....+.-|. +..=|+++|....-..+-++-.-+. -+ ..++.++.+.+.|.+-+
T Consensus 276 ~pl~~~~~i~~~~~t~ns~~q~~~~a~~~~~~v~~v~~~~~vf~~~i~~l~~~~~~~~~h~~l~fdKdd~~~~~FVaaaa 355 (603)
T KOG2013|consen 276 VPLSIAEVISTSLETINSIVQSITSAQLNDQNVWTVDEGAVVFRLSIQALDLRCPKESDHWYLIFDKDDASTMEFVAAAA 355 (603)
T ss_pred CCcchhhccCCccccccchhhhccccccCCcceeeeccccHHHHHHHHHhcccCCccCCCceEEEcCCcHHHHHHHHHHh
Confidence 4421 01111111111223344554 4556888888887777777664322 11 24556778888887654
Q ss_pred H
Q 013180 440 K 440 (448)
Q Consensus 440 ~ 440 (448)
-
T Consensus 356 N 356 (603)
T KOG2013|consen 356 N 356 (603)
T ss_pred h
Confidence 3
No 36
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=99.97 E-value=9.4e-31 Score=232.11 Aligned_cols=128 Identities=38% Similarity=0.551 Sum_probs=118.9
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180 83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL 162 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~ 162 (448)
|+++|+|+|+||+||+++++|+++||++|+|+|+|.|+++||+||++++.+|+|++|+++++++|+++||++++++++..
T Consensus 1 r~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~ 80 (135)
T PF00899_consen 1 RNKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK 80 (135)
T ss_dssp HT-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 013180 163 YDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGA 211 (448)
Q Consensus 163 ~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~ 211 (448)
++.++..+++.+ +|+||+|+|+.+.+..++++|+++++|+|+++..|.
T Consensus 81 ~~~~~~~~~~~~-~d~vi~~~d~~~~~~~l~~~~~~~~~p~i~~~~~g~ 128 (135)
T PF00899_consen 81 IDEENIEELLKD-YDIVIDCVDSLAARLLLNEICREYGIPFIDAGVNGF 128 (135)
T ss_dssp CSHHHHHHHHHT-SSEEEEESSSHHHHHHHHHHHHHTT-EEEEEEEETT
T ss_pred cccccccccccC-CCEEEEecCCHHHHHHHHHHHHHcCCCEEEEEeecC
Confidence 988888888875 999999999999999999999999999999987654
No 37
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=99.97 E-value=1e-29 Score=263.60 Aligned_cols=181 Identities=22% Similarity=0.284 Sum_probs=152.0
Q ss_pred cEEEEcCChHHHHHHHHHHHcCC-----ceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe
Q 013180 86 YVVVIGLGGVGSHAAAMLLRSGV-----GRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV 160 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~LarsGV-----g~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~ 160 (448)
+|+||||||+||+++++|+++|| |+|+|+|+|.|+.||||||++|+.+|||++|+++++++++++||+++|+++.
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a~~ 80 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITALQ 80 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEEEe
Confidence 69999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccch----HHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCccCCCceEEcccccccCChhhHHHH
Q 013180 161 LLYDASSE----EEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADPTRIRVADLRESTNDPLSRAVM 236 (448)
Q Consensus 161 ~~~~~~~~----~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~dpt~i~i~di~~~~~dpl~~~~r 236 (448)
..+++++. .+++.+ +|+||+|.||+++|..+++.|+.+++|+|+++..
T Consensus 81 ~~v~~~~~~~~~~~f~~~-~DvVi~alDn~~aR~~vn~~C~~~~iPli~~gt~--------------------------- 132 (435)
T cd01490 81 NRVGPETEHIFNDEFWEK-LDGVANALDNVDARMYVDRRCVYYRKPLLESGTL--------------------------- 132 (435)
T ss_pred cccChhhhhhhhHHHhcC-CCEEEECCCCHHHHHHHHHHHHHhCCCEEEEecc---------------------------
Confidence 88876544 355664 9999999999999999999999999999998864
Q ss_pred HHHhhhcCccCCeeEEeCCCCCcccCCCCCCCCCCCCCCCCCCccCCcccccCCcccchHHHHHHHHHHHHHHHHHcCC
Q 013180 237 HRLRKDYGIEGGIPVVFSLEKPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGSIPAIFGMVMASHVVTQLAERQ 315 (448)
Q Consensus 237 ~~l~~~~g~~g~i~~v~s~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvlg~~~~i~G~~~A~~vi~~l~g~~ 315 (448)
|..|++.++.+..++|+.|.+.+. ++ ..|-+.++..|. ........|.+....+++.+
T Consensus 133 -------G~~G~v~v~iP~~te~y~~~~~p~---~~-------~~P~Ctl~~~P~----~~eHcI~wA~~~F~~lF~~~ 190 (435)
T cd01490 133 -------GTKGNTQVVIPHLTESYSSSRDPP---EK-------SIPLCTLKNFPN----AIEHTIQWARDEFEGLFKQP 190 (435)
T ss_pred -------cceeEEEEEeCCCCCCccCCCCCC---CC-------CCCCccccCCCC----CchHHHHHHHHHHHHHhccc
Confidence 445677777777788888863221 11 244455555555 44556667888888888765
No 38
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=99.96 E-value=7.4e-30 Score=265.37 Aligned_cols=147 Identities=16% Similarity=0.214 Sum_probs=136.3
Q ss_pred HHhhhhHhhcCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHH
Q 013180 65 EQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLK 144 (448)
Q Consensus 65 e~~~Rq~~~~G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~ 144 (448)
++|+||+++||.+||++|++++|+||||||+|++++++|+++|||+|+|+|+|.|+.+||+|||+++.+|+|++|+++++
T Consensus 1 ~rYDRQlrLwG~~gQ~~L~~s~VlliG~gglGsEilKNLvL~GIg~~tIvD~~~V~~sDL~~nFfl~~~diGk~kA~~~~ 80 (425)
T cd01493 1 QKYDRQLRLWGEHGQAALESAHVCLLNATATGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDASSLGKSRAEATC 80 (425)
T ss_pred CcchHHHHHhHHHHHHHHhhCeEEEEcCcHHHHHHHHHHHHcCCCeEEEECCCcCchhhccccccCChhhcCcHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhCCCceEEEEeccCCc--cchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCc
Q 013180 145 KHFSSIFPECHIDAKVLLYDA--SSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGAR 212 (448)
Q Consensus 145 ~~l~~inP~v~v~~~~~~~~~--~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k 212 (448)
++|+++||+++++.+.+..+. ++..+++.+ +|+||+|.++......|+++|+++++|+|.+...|..
T Consensus 81 ~~L~eLNp~V~i~~~~e~~~~ll~~~~~f~~~-fdiVI~t~~~~~~~~~L~~~c~~~~iPlI~~~s~G~~ 149 (425)
T cd01493 81 ELLQELNPDVNGSAVEESPEALLDNDPSFFSQ-FTVVIATNLPESTLLRLADVLWSANIPLLYVRSYGLY 149 (425)
T ss_pred HHHHHHCCCCEEEEEecccchhhhhHHHHhcC-CCEEEECCCCHHHHHHHHHHHHHcCCCEEEEecccCE
Confidence 999999999999998876542 234566765 9999999999999999999999999999999888763
No 39
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=99.96 E-value=8.3e-29 Score=221.48 Aligned_cols=127 Identities=39% Similarity=0.633 Sum_probs=119.1
Q ss_pred cEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccCCc
Q 013180 86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDA 165 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~~~ 165 (448)
+|+|+||||+||+++++|+++|+++|+|+|+|.|+++||+||++++.+|+|++|+++++++++++||+++++.+...++.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~ 80 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISE 80 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecCh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999988877
Q ss_pred cchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCcc
Q 013180 166 SSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARA 213 (448)
Q Consensus 166 ~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~ 213 (448)
++..+++.+ +|+||+|+|+.+.+..++++|+++++|+|+++..|..+
T Consensus 81 ~~~~~~~~~-~diVi~~~d~~~~~~~l~~~~~~~~i~~i~~~~~g~~g 127 (143)
T cd01483 81 DNLDDFLDG-VDLVIDAIDNIAVRRALNRACKELGIPVIDAGGLGLGG 127 (143)
T ss_pred hhHHHHhcC-CCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcCCCcEE
Confidence 666677765 99999999999999999999999999999999876543
No 40
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=99.96 E-value=3e-28 Score=240.64 Aligned_cols=120 Identities=27% Similarity=0.341 Sum_probs=112.0
Q ss_pred cEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCc--cCchHHHHHHHHHhhhCCCceEEEEeccC
Q 013180 86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRAD--VGTPKALCLKKHFSSIFPECHIDAKVLLY 163 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~d--vG~~Kv~~~~~~l~~inP~v~v~~~~~~~ 163 (448)
||+|+||||+||++|++|+++|||+|+|+|+|.|+.+||+||++|+.+| +|++|+++++++|+++||+++++.+...+
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~~~~~I 80 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATGIVLSI 80 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEEeeeec
Confidence 6999999999999999999999999999999999999999999999999 99999999999999999999999887543
Q ss_pred -----------------CccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEE
Q 013180 164 -----------------DASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCA 206 (448)
Q Consensus 164 -----------------~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~ 206 (448)
+.+++.+++.+ +|+||||+||+++|..++.+|.++++|+|++
T Consensus 81 pmpgh~~~~~~~~~~~~~~~~l~~li~~-~DvV~d~tDn~esR~L~~~~~~~~~k~~I~a 139 (307)
T cd01486 81 PMPGHPISESEVPSTLKDVKRLEELIKD-HDVIFLLTDSRESRWLPTLLSAAKNKLVINA 139 (307)
T ss_pred cccccccccccccccccCHHHHHHHHhh-CCEEEECCCCHHHHHHHHHHHHHhCCcEEEE
Confidence 33456777876 9999999999999999999999999999985
No 41
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=99.96 E-value=6.3e-29 Score=280.57 Aligned_cols=144 Identities=22% Similarity=0.328 Sum_probs=135.7
Q ss_pred HHHHhhhhHhhcCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHH
Q 013180 63 VAEQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALC 142 (448)
Q Consensus 63 ~~e~~~Rq~~~~G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~ 142 (448)
..++|+||+++||.++|+||++++|+|+||||+|+++|++|+++|||+|+|+|+|.|+.+||+||++++.+|||++|+++
T Consensus 3 d~~lYsRQi~l~G~eaq~kL~~s~VLIiG~gGLG~EiaKnL~laGVg~iti~D~d~v~~sdL~rQf~~~~~dIGk~Kaea 82 (1008)
T TIGR01408 3 DEALYSRQLYVLGDEAMQKMAKSNVLISGMGGLGLEIAKNLVLAGVKSVTLHDTEKCQAWDLSSNFFLSEDDVGRNRAEA 82 (1008)
T ss_pred hHhhhhhHHHhcCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCeecHhhCCCceecchHHcCchHHHH
Confidence 34799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCceEEEEeccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcC--CcEEEEcCCCC
Q 013180 143 LKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRG--LKVLCATGAGA 211 (448)
Q Consensus 143 ~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~--ip~I~~~g~G~ 211 (448)
++++|+++||+++|+++...+++ +++.+ +|+||+|.++++.+..+|++|++++ +|+|+++..|.
T Consensus 83 ~~~~L~eLNp~V~V~~~~~~l~~----e~l~~-fdvVV~t~~~~~~~~~in~~cr~~~~~I~fI~~~~~G~ 148 (1008)
T TIGR01408 83 VVKKLAELNPYVHVSSSSVPFNE----EFLDK-FQCVVLTEMSLPLQKEINDFCHSQCPPIAFISADVRGL 148 (1008)
T ss_pred HHHHHHHHCCCceEEEecccCCH----HHHcC-CCEEEECCCCHHHHHHHHHHHHHcCCCeEEEEEeecce
Confidence 99999999999999999876653 46665 9999999999999999999999999 99999887665
No 42
>KOG2014 consensus SMT3/SUMO-activating complex, AOS1/RAD31 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.7e-29 Score=242.54 Aligned_cols=152 Identities=21% Similarity=0.349 Sum_probs=140.0
Q ss_pred ccchhHHHHHHhhhhHhhcCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCcc
Q 013180 56 DLLKDEVVAEQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADV 135 (448)
Q Consensus 56 ~~~~~e~~~e~~~Rq~~~~G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dv 135 (448)
.+.++|. ..|+|||++||.++|++|+++||+|+|.+|+|++++++|+.+|||+++++|+-.|+..+++-|||+..+++
T Consensus 5 else~E~--alYDRQIRLWG~~AQ~~lr~s~VLlig~k~lgaEiaKnivLaGV~~ltlLD~~~Vt~Ed~~~qFli~~~~v 82 (331)
T KOG2014|consen 5 ELSEQEI--ALYDRQIRLWGLEAQRRLRKSHVLLIGGKGLGAEIAKNIVLAGVGSLTLLDDRLVTEEDVGAQFLISASSV 82 (331)
T ss_pred hhhHHHH--HHHHHHHHHccHHHHHhhhhceEEEecCchHHHHHHHHhhhcccceeEEeeccccchhcCCceeEEchhhh
Confidence 4556666 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHhhhCCCceEEEEeccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 013180 136 GTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGA 211 (448)
Q Consensus 136 G~~Kv~~~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~ 211 (448)
|+.|+++..++++++||.++|....+.+.+.+ ++++.. ||+||-.--+.+.+..+|..|++++++|+.+...|.
T Consensus 83 g~~raeas~erl~~LNPmV~v~~d~edl~ek~-eeff~q-FdlVV~~~~s~e~~~kvn~icrk~~i~F~a~d~~g~ 156 (331)
T KOG2014|consen 83 GQTRAEASLERLQDLNPMVDVSVDKEDLSEKD-EEFFTQ-FDLVVATDQSREEKCKVNEICRKLNIAFYAGDCFGL 156 (331)
T ss_pred chHHHHHHHHHHHhcCCceEEEechhhhhhcc-hhhhhc-eeEEEEeccchhhhhhHHHHHHhcCceEEeccccce
Confidence 99999999999999999999998877766544 566764 999998888999999999999999999999876664
No 43
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=99.95 E-value=2.9e-27 Score=229.13 Aligned_cols=136 Identities=30% Similarity=0.382 Sum_probs=119.5
Q ss_pred hhCCcEEEEcCChHHHHHHHHHHHcCC-----c-----eEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhC
Q 013180 82 VSGSYVVVIGLGGVGSHAAAMLLRSGV-----G-----RLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIF 151 (448)
Q Consensus 82 L~~~~VlVVG~GGvGs~va~~LarsGV-----g-----~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~in 151 (448)
-+.++|+||||||+||+++++|+|+|+ | +|+|+|+|.|++||||||. |..+|||++|++++++++..++
T Consensus 9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQl-f~~~dVG~~Ka~v~~~ri~~~~ 87 (244)
T TIGR03736 9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQA-FYPADVGQNKAIVLVNRLNQAM 87 (244)
T ss_pred hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhccc-CChhHCCcHHHHHHHHHHHhcc
Confidence 378999999999999999999999973 4 9999999999999999995 6779999999999999999998
Q ss_pred CCceEEEEeccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHH--c-CCcEEEEcCCCCccCCCceEEcccccc
Q 013180 152 PECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVR--R-GLKVLCATGAGARADPTRIRVADLRES 226 (448)
Q Consensus 152 P~v~v~~~~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~--~-~ip~I~~~g~G~k~dpt~i~i~di~~~ 226 (448)
.++|+++...++++ +++. ++|+||||+||+++|..|++.|.+ . ++|++.+ |.+.+|+++.++++..+
T Consensus 88 -~~~i~a~~~~~~~~---~~~~-~~DiVi~avDn~~aR~~l~~~~~~~~~~~~~~ld~---Gn~~~~gqv~~g~i~~~ 157 (244)
T TIGR03736 88 -GTDWTAHPERVERS---STLH-RPDIVIGCVDNRAARLAILRAFEGGYSGYAYWLDL---GNRADDGQVILGQVPSR 157 (244)
T ss_pred -CceEEEEEeeeCch---hhhc-CCCEEEECCCCHHHHHHHHHHHHHhcccccceecc---cCCCCCCcEEEEecccc
Confidence 89999999888763 2344 499999999999999999999988 2 4777765 45889999999999654
No 44
>PRK06153 hypothetical protein; Provisional
Probab=99.94 E-value=6.3e-27 Score=237.82 Aligned_cols=127 Identities=22% Similarity=0.322 Sum_probs=117.4
Q ss_pred HHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccc-cccCCccCc--hHHHHHHHHHhhhCCC
Q 013180 77 ESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHA-VATRADVGT--PKALCLKKHFSSIFPE 153 (448)
Q Consensus 77 ~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~-l~~~~dvG~--~Kv~~~~~~l~~inP~ 153 (448)
+.|++|++++|+||||||+||+++.+|+|+||++|+|||+|.|+.||||||. +++.+|+|+ +||+++++++.++||
T Consensus 169 ~~q~kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in~- 247 (393)
T PRK06153 169 ALSAKLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMRR- 247 (393)
T ss_pred HHHHHHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhCC-
Confidence 5699999999999999999999999999999999999999999999999998 568899999 999999999999998
Q ss_pred ceEEEEeccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEc
Q 013180 154 CHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCAT 207 (448)
Q Consensus 154 v~v~~~~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~ 207 (448)
+|.++...+++++... +.+ +|+||+|+|+.++|..|+++|.++++|+|+++
T Consensus 248 -~I~~~~~~I~~~n~~~-L~~-~DiV~dcvDn~~aR~~ln~~a~~~gIP~Id~G 298 (393)
T PRK06153 248 -GIVPHPEYIDEDNVDE-LDG-FTFVFVCVDKGSSRKLIVDYLEALGIPFIDVG 298 (393)
T ss_pred -eEEEEeecCCHHHHHH-hcC-CCEEEEcCCCHHHHHHHHHHHHHcCCCEEEee
Confidence 5677778888877664 454 99999999999999999999999999999965
No 45
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=99.94 E-value=6.2e-27 Score=224.19 Aligned_cols=115 Identities=18% Similarity=0.267 Sum_probs=107.1
Q ss_pred HHhhhhHhhcCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHH
Q 013180 65 EQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLK 144 (448)
Q Consensus 65 e~~~Rq~~~~G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~ 144 (448)
++|+||+++||.++|+||++++|+|+|+||+|+++++||+++|||+|+|+|+|.|+.+||+||++++. |+|++|+++++
T Consensus 7 ~RYsRQIrLwG~EgQ~KL~~SrVLVVG~GGLGsEVAKnLaLAGVGsItIvDdD~Ve~SNL~RQfl~~~-dvGk~KAeaAa 85 (287)
T PTZ00245 7 VRYDRQIRLWGKSTQQQLMHTSVALHGVAGAAAEAAKNLVLAGVRAVAVADEGLVTDADVCTNYLMQG-EAGGTRGARAL 85 (287)
T ss_pred HHHhHHHHHhCHHHHHHHhhCeEEEECCCchHHHHHHHHHHcCCCeEEEecCCccchhhhcccccccc-ccCCcHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999987 78999999999
Q ss_pred HHHhhhCCCceEEEEeccCCccchHHHhcCCCCeEEEccCCHH
Q 013180 145 KHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNID 187 (448)
Q Consensus 145 ~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~VIda~Dn~~ 187 (448)
++++++||.++|+++...++.++ ++++||-|.-+.+
T Consensus 86 ~~L~eLNP~V~V~~i~~rld~~n-------~fqvvV~~~~~le 121 (287)
T PTZ00245 86 GALQRLNPHVSVYDAVTKLDGSS-------GTRVTMAAVITEE 121 (287)
T ss_pred HHHHHHCCCcEEEEcccccCCcC-------CceEEEEEcccHH
Confidence 99999999999999988887654 4888887665544
No 46
>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2e-26 Score=224.88 Aligned_cols=152 Identities=21% Similarity=0.358 Sum_probs=129.8
Q ss_pred CHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCc
Q 013180 75 GVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPEC 154 (448)
Q Consensus 75 G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v 154 (448)
++|..+-|.+.+|+|+|+||+||++.++|+.+|++.+.+||.|+++.+||||||+|+++|||+||++++++.+.+..|.+
T Consensus 31 ~~e~l~~l~~~kiLviGAGGLGCElLKnLal~gF~~~~viDmDTId~sNLNRQFLF~~~DiG~pKAqvAA~fvn~Rvp~~ 110 (422)
T KOG2015|consen 31 SEENLEFLQDCKILVIGAGGLGCELLKNLALSGFRQLHVIDMDTIDLSNLNRQFLFRESDIGEPKAQVAAEFVNRRVPGC 110 (422)
T ss_pred CHHHHHHHhhCcEEEEccCcccHHHHHhHHhhccceeEEEeecceecccchhhhcccccccCchhHHHHHHHHHhhCCCc
Confidence 57788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHH---cC-------CcEEEEcCCCCccCCCceEEcccc
Q 013180 155 HIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVR---RG-------LKVLCATGAGARADPTRIRVADLR 224 (448)
Q Consensus 155 ~v~~~~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~---~~-------ip~I~~~g~G~k~dpt~i~i~di~ 224 (448)
.|..+..++..-. .++.. +||+||.+.|++..|.+||....+ .| +|+|++|..|.|++. |+.++-+.
T Consensus 111 ~v~~h~~kIqd~~-~~FYk-~F~~iicGLDsIeaRRwIN~mL~~l~~~g~~d~~~iiPlIDGGtEG~KG~a-rvI~Pg~T 187 (422)
T KOG2015|consen 111 VVVPHRQKIQDKP-ISFYK-RFDLIICGLDSIEARRWINGMLVRLKLEGNYDISSIIPLIDGGTEGFKGHA-RVIYPGIT 187 (422)
T ss_pred EEeeeecchhcCC-HHHHh-hhceEEecccchhHHHHHHHHHHHHHhccCCCccceeeeeecCccccccee-EEEecCcc
Confidence 9999888776543 34555 499999999999999999976543 23 799999988777753 34444444
Q ss_pred cccCC
Q 013180 225 ESTND 229 (448)
Q Consensus 225 ~~~~d 229 (448)
.+.+|
T Consensus 188 aCieC 192 (422)
T KOG2015|consen 188 ACIEC 192 (422)
T ss_pred HHHHh
Confidence 44444
No 47
>KOG2336 consensus Molybdopterin biosynthesis-related protein [Coenzyme transport and metabolism]
Probab=99.94 E-value=6.2e-26 Score=217.79 Aligned_cols=220 Identities=23% Similarity=0.351 Sum_probs=175.1
Q ss_pred cchhHHHHHHhhhhHhh--cC-HHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCC
Q 013180 57 LLKDEVVAEQLTRNIQF--FG-VESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRA 133 (448)
Q Consensus 57 ~~~~e~~~e~~~Rq~~~--~G-~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~ 133 (448)
+..+=.-.+-|+|-+.+ +| .+..+|++...|.|||.|||||-+|++|.|+|+|++.|+|.|.|++.|+||-| |++.
T Consensus 52 lSsEVVDSNPYSRLMALqRMgIV~dYErIR~~aVAiVGvGGVGSV~AeMLTRCGIGkLlLfDYDkVElANMNRLF-f~P~ 130 (422)
T KOG2336|consen 52 LSSEVVDSNPYSRLMALQRMGIVDDYERIREFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLF-FQPD 130 (422)
T ss_pred hhhhHhcCChHHHHHHHHHhcchhhHHHHhhheeEEEecCchhHHHHHHHHhcCcceEEEeecchhhhhcccccc-cCcc
Confidence 33333344678887765 44 36689999999999999999999999999999999999999999999999986 5889
Q ss_pred ccCchHHHHHHHHHhhhCCCceEEEEeccCC-ccchHHHhc---------C-CCCeEEEccCCHHHHHHHHHHHHHcCCc
Q 013180 134 DVGTPKALCLKKHFSSIFPECHIDAKVLLYD-ASSEEEILS---------G-HPDFVLDCIDNIDTKVALLAACVRRGLK 202 (448)
Q Consensus 134 dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~~-~~~~~~ll~---------~-~~D~VIda~Dn~~~r~~l~~~c~~~~ip 202 (448)
..|.+|++++.+.|..+||++.++.++..++ -++++.|.. + ..|+|+.|.||+++|..+|.+|.+.+..
T Consensus 131 QaGlsKv~AA~~TL~~iNPDV~iE~hn~NITTvenFd~F~~~is~g~~~~gkpvDLVLSCVDNfEARMavN~ACNE~~q~ 210 (422)
T KOG2336|consen 131 QAGLSKVDAAVQTLAEINPDVVIEVHNYNITTVENFDTFTDRISNGSLCPGKPVDLVLSCVDNFEARMAVNQACNELNQT 210 (422)
T ss_pred cccchHHHHHHHHHHhcCCCeEEEEeecceeeehhHHHHHHHhhcCCCCCCCcceEEeeehhhHHHHHHHHHHHHHhhhH
Confidence 9999999999999999999999999988764 467766642 2 4899999999999999999999999998
Q ss_pred EEEEcCCCCccCCCceEEcccccccCChhhHHHHHHHhhhcCccCCeeEEeCCCCCcccCCCCC-CCCCCCCCCCCCCcc
Q 013180 203 VLCATGAGARADPTRIRVADLRESTNDPLSRAVMHRLRKDYGIEGGIPVVFSLEKPKAKLLPFT-GPSGEDENPSDYQMV 281 (448)
Q Consensus 203 ~I~~~g~G~k~dpt~i~i~di~~~~~dpl~~~~r~~l~~~~g~~g~i~~v~s~e~p~~~~~~~~-~~~~~~~~~~~~~~~ 281 (448)
++.++-. ...+.|+|..+.++++.|+.|.|-- -..+-++...
T Consensus 211 WmESGVS--------------------------------EnAVSGHIQ~i~PGetACFACaPPlVVAs~IDErTL----- 253 (422)
T KOG2336|consen 211 WMESGVS--------------------------------ENAVSGHIQLIVPGETACFACAPPLVVASGIDERTL----- 253 (422)
T ss_pred HHHccCc--------------------------------cccccceeEEecCCccceecccCceeeecCcchhhh-----
Confidence 8876643 1456789999999999999998521 1111110000
Q ss_pred CCcccccCCcccchHHHHHHHHHHHHHHHHHcCC
Q 013180 282 PGFRVRIIPVLGSIPAIFGMVMASHVVTQLAERQ 315 (448)
Q Consensus 282 ~~~~~~~~pvlg~~~~i~G~~~A~~vi~~l~g~~ 315 (448)
..-. -...+|.++-+++.+++.+..||+|+..+
T Consensus 254 KReG-VCAASLPTTMgvvAG~LVqN~LK~LLNFG 286 (422)
T KOG2336|consen 254 KREG-VCAASLPTTMGVVAGFLVQNSLKFLLNFG 286 (422)
T ss_pred hhcc-eeeecCcchHHHHHHHHHHHHHHHHhhcc
Confidence 0000 02356778899999999999999998754
No 48
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=2e-25 Score=238.33 Aligned_cols=161 Identities=25% Similarity=0.383 Sum_probs=149.7
Q ss_pred HHhhhhHhhcCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCC-----ceEEEEeCCccccCCCcccccccCCccCchH
Q 013180 65 EQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGV-----GRLLLVDFDQVSVSSLNRHAVATRADVGTPK 139 (448)
Q Consensus 65 e~~~Rq~~~~G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGV-----g~i~LiD~D~V~~sNLnRq~l~~~~dvG~~K 139 (448)
.||+-|++.||..-|+||.+.++.+||+|.+||+.++|++..|| |+|++.|+|.+|.|||||||||+..|||++|
T Consensus 411 sRYD~qiavfG~~fqeKL~~~~~FlVGaGAIGCE~LKN~am~Gvg~g~~g~ItVTDmD~IEkSNLnRQFLFR~~dVgk~K 490 (1013)
T KOG2012|consen 411 SRYDGQIAVFGAKFQEKLADQKVFLVGAGAIGCELLKNFALMGVGCGNSGKITVTDMDHIEKSNLNRQFLFRPWDVGKPK 490 (1013)
T ss_pred CccccchhhhchHHHHHHhhCcEEEEccchhhHHHHHhhhheeeccCCCCceEEeccchhhhccccceeeccccccCchH
Confidence 59999999999999999999999999999999999999999999 4799999999999999999999999999999
Q ss_pred HHHHHHHHhhhCCCceEEEEeccCCccc----hHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCccCC
Q 013180 140 ALCLKKHFSSIFPECHIDAKVLLYDASS----EEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADP 215 (448)
Q Consensus 140 v~~~~~~l~~inP~v~v~~~~~~~~~~~----~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~dp 215 (448)
++++++....+||.++|+++..++.++. .++++. +.|+|..|.||.++|.++.+-|.-+.+|++.+|..|+|++
T Consensus 491 Se~AA~A~~~mNp~l~I~a~~~rvgpeTE~If~D~Ff~-~ld~VanALDNVdAR~YvD~RCv~~~kPLLESGTlGTKGn- 568 (1013)
T KOG2012|consen 491 SEVAAAAARGMNPDLNIIALQNRVGPETEHIFNDEFFE-NLDGVANALDNVDARRYVDRRCVYYRKPLLESGTLGTKGN- 568 (1013)
T ss_pred HHHHHHHHHhcCCCceeeehhhccCcccccccchhHHh-hhHHHHHhhcchhhhhhhhhhhhhhccchhhccCcCCccc-
Confidence 9999999999999999999999887665 244555 5999999999999999999999999999999999999986
Q ss_pred CceEEccccccc
Q 013180 216 TRIRVADLREST 227 (448)
Q Consensus 216 t~i~i~di~~~~ 227 (448)
|++.|+.+++++
T Consensus 569 tQVvvPhlTEsY 580 (1013)
T KOG2012|consen 569 TQVVVPHLTESY 580 (1013)
T ss_pred eeEEeccccccc
Confidence 677788888765
No 49
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=4e-22 Score=213.32 Aligned_cols=152 Identities=21% Similarity=0.300 Sum_probs=140.2
Q ss_pred ccchhHHHHHHhhhhHhhcCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCcc
Q 013180 56 DLLKDEVVAEQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADV 135 (448)
Q Consensus 56 ~~~~~e~~~e~~~Rq~~~~G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dv 135 (448)
...+.++-+..|+||++.+|.++|+||..++|+|.|+||+|.+||+||+.+||+++||.|...+.+++|.-|++++++||
T Consensus 9 ~~a~~~IDE~LYSRQLYVlG~eAM~~m~~S~VLisGl~GLGvEIAKNliLaGVksvTlhD~~~~~~~DLssqf~L~E~Di 88 (1013)
T KOG2012|consen 9 NSASQEIDESLYSRQLYVLGHEAMRRMQGSNVLISGLQGLGVEIAKNLILAGVKSVTLHDPRPVQLSDLSSQFYLSEEDI 88 (1013)
T ss_pred CcchhhhhhhhhhhhhhhccHHHHHHHhhCcEEEecCCcccHHHHhhHhhhccceEEeeCCCcccHHhhccceeeeHHhc
Confidence 34456666688999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHhhhCCCceEEEEeccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCc
Q 013180 136 GTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGAR 212 (448)
Q Consensus 136 G~~Kv~~~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k 212 (448)
|++++++..++|.++|+.|.|.+++..++ .+++.+ |++||-+-.+......|+++||+++|.+|.+...|..
T Consensus 89 gknRA~as~~~LaeLN~yV~V~v~t~~~~----~e~L~~-FqvVVlt~~~le~q~~i~~fch~~~i~fi~ad~RGLf 160 (1013)
T KOG2012|consen 89 GKNRAEASVEKLAELNNYVPVVVLTGPLT----EEFLSD-FQVVVLTDASLEEQLKINDFCHSHGIAFIAADTRGLF 160 (1013)
T ss_pred CCchHHHHHHHHHHhhcceeeEEecCccc----HHHHhC-CcEEEEecCchHHHHHHHHHHHhcCeEEEEeccchhh
Confidence 99999999999999999999999877665 467775 9999999999999999999999999999998877653
No 50
>KOG2016 consensus NEDD8-activating complex, APP-BP1/UBA5 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=3e-19 Score=180.85 Aligned_cols=146 Identities=17% Similarity=0.208 Sum_probs=129.4
Q ss_pred HHhhhhHhhcCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHH
Q 013180 65 EQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLK 144 (448)
Q Consensus 65 e~~~Rq~~~~G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~ 144 (448)
.+|+||+++||++||..|..++|+++|||.+||+++++|+..|||.|+++|...|+.+++..+|+...+++|++||++..
T Consensus 8 ~kYDRQlRlwge~gQ~~le~a~vCll~~~~~g~e~lKnLvl~Gigs~tvvd~~~v~~~d~g~nF~~~~~~~GksrA~a~~ 87 (523)
T KOG2016|consen 8 TKYDRQLRLWGEEGQAALESASVCLLNATPLGSEALKNLVLPGIGSFTVVDGSKVEQGDLGNNFFLDAKSIGKSRAEATL 87 (523)
T ss_pred hHHHHHHHHHHHHhHhhhhhceEEEecCChhHHHHHHhhcccccccEEEEecceeeecchhhHHHHHHHhhchhHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhCCCceEEEEeccC--CccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 013180 145 KHFSSIFPECHIDAKVLLY--DASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGA 211 (448)
Q Consensus 145 ~~l~~inP~v~v~~~~~~~--~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~ 211 (448)
+.++++||.+.-....+.- ...+..+++. ++++||.+--+-++-..+.++|+.+++|++.+-..|.
T Consensus 88 e~LqeLN~~V~~~~vee~p~~Li~~~p~ff~-qFtvViatnl~E~~~~kl~~~l~~~~vpll~~rs~Gl 155 (523)
T KOG2016|consen 88 EFLQELNPSVSGSFVEESPDFLIDNDPSFFS-QFTVVIATNLNEQTLLKLAEILREANVPLLLTRSYGL 155 (523)
T ss_pred HHHHHhChhhhcCccccChhhhhhcCchhhh-eeeeeeccccchhhhhhhHHHHHhcCCceEEEeeecc
Confidence 9999999998876554421 1222334555 4999998888888899999999999999999765553
No 51
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=99.76 E-value=9.9e-18 Score=178.07 Aligned_cols=204 Identities=17% Similarity=0.224 Sum_probs=148.9
Q ss_pred HHHhhhhHhhc------CHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCc
Q 013180 64 AEQLTRNIQFF------GVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGT 137 (448)
Q Consensus 64 ~e~~~Rq~~~~------G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~ 137 (448)
.|||+.||.|| |.+..++.++++|+|+|.||+|++++..|+++|+++|+.+|+|.+ .+|+|| ||+
T Consensus 103 lERYaaqI~F~~~fs~s~~~rF~~qR~akVlVlG~Gg~~s~lv~sL~~sG~~~I~~vd~D~v-~SNlnR--------IgE 173 (637)
T TIGR03693 103 LDRYAAQIEFIEADADSGALKFELSRNAKILAAGSGDFLTKLVRSLIDSGFPRFHAIVTDAE-EHALDR--------IHE 173 (637)
T ss_pred HHHHHHHHHHHHHhccCchhhhhhhhcccEEEEecCchHHHHHHHHHhcCCCcEEEEecccc-chhhhH--------HHH
Confidence 39999999986 457778889999999999999999999999999999999999999 999999 777
Q ss_pred hHHHHHHHHHhhhCCCceEEEEeccCCccchHHHhcCCCCeEEEccCCH--HHHHHHHHHHHHcC---CcEEEEcCCCCc
Q 013180 138 PKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNI--DTKVALLAACVRRG---LKVLCATGAGAR 212 (448)
Q Consensus 138 ~Kv~~~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~VIda~Dn~--~~r~~l~~~c~~~~---ip~I~~~g~G~k 212 (448)
. ++.+++ .||.++|+.++. -..+...+.+.+ +|+||..+|++ ..-.++|+.|.+.| +|++.++.
T Consensus 174 l-~e~A~~----~n~~v~v~~i~~-~~~~dl~ev~~~-~DiVi~vsDdy~~~~Lr~lN~acvkegk~~IPai~~G~---- 242 (637)
T TIGR03693 174 L-AEIAEE----TDDALLVQEIDF-AEDQHLHEAFEP-ADWVLYVSDNGDIDDLHALHAFCKEEGKGFIPAICLKQ---- 242 (637)
T ss_pred H-HHHHHH----hCCCCceEeccC-CcchhHHHhhcC-CcEEEEECCCCChHHHHHHHHHHHHcCCCeEEEEEccc----
Confidence 7 666665 999999998875 334556677775 99999999954 45678999999999 55555432
Q ss_pred cCCCceEEcccccccCChhhHHHHHHHhhhcCccCCeeEEeCCCCCcccCC--CCCCCCCCCCCCCCCCccCCcccccCC
Q 013180 213 ADPTRIRVADLRESTNDPLSRAVMHRLRKDYGIEGGIPVVFSLEKPKAKLL--PFTGPSGEDENPSDYQMVPGFRVRIIP 290 (448)
Q Consensus 213 ~dpt~i~i~di~~~~~dpl~~~~r~~l~~~~g~~g~i~~v~s~e~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p 290 (448)
.++.| |++-+..++|..|+ -+......... + ..+
T Consensus 243 ------------------------------~~liG--PlftPgkTGCWeCa~~RL~e~~L~~~~-------~-----s~a 278 (637)
T TIGR03693 243 ------------------------------VGLAG--PVFQQHGDECFEAAWHRLHESALHEEN-------S-----LAA 278 (637)
T ss_pred ------------------------------ceeec--ceECCCCCcHHHHHHHHHHHHhcCCCC-------c-----ccc
Confidence 33445 66666778898883 11111000000 1 122
Q ss_pred cccchHHHHHHHHHHHHHHHHHcCC-CC-CCccccccHHHHHH
Q 013180 291 VLGSIPAIFGMVMASHVVTQLAERQ-VQ-TEPIVNMDVDHYRL 331 (448)
Q Consensus 291 vlg~~~~i~G~~~A~~vi~~l~g~~-~~-~~~~~~~~~~~y~~ 331 (448)
+..+..++++.+++.|++|++++.. .. ...+...|....+.
T Consensus 279 ~sPat~AmlAnviv~ElfK~ITg~~~~es~gqlv~lDleTLE~ 321 (637)
T TIGR03693 279 FPLAGKAMLANIIVFELFKAAADDEHLEKKNQFFLLDLATLEG 321 (637)
T ss_pred cCHHHHHHHHHHHHHHHHHHHhccCccccCCcEEEEEcccccc
Confidence 2223478999999999999999742 22 23444445544444
No 52
>KOG2337 consensus Ubiquitin activating E1 enzyme-like protein [Coenzyme transport and metabolism]
Probab=99.52 E-value=8.7e-14 Score=143.69 Aligned_cols=132 Identities=24% Similarity=0.298 Sum_probs=113.7
Q ss_pred CHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCcc---CchHHHHHHHHHhhhC
Q 013180 75 GVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADV---GTPKALCLKKHFSSIF 151 (448)
Q Consensus 75 G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dv---G~~Kv~~~~~~l~~in 151 (448)
-.-..+++.+.|+++.|+|.+||.||.+|..-||.|||++|..+|+.||=.||.+|+-+|- |++||++++++|++|+
T Consensus 331 PdLnLd~is~~KcLLLGAGTLGC~VAR~Ll~WGvRhITFvDn~kVsySNPVRQsLy~FEDc~~~g~~KAe~Aa~rLk~If 410 (669)
T KOG2337|consen 331 PDLNLDIISQTKCLLLGAGTLGCNVARNLLGWGVRHITFVDNGKVSYSNPVRQSLYTFEDCLGGGRPKAETAAQRLKEIF 410 (669)
T ss_pred CccchhhhhcceeEEecCcccchHHHHHHHhhccceEEEEecCeeeccchhhhhhhhhhhhhccCCcchHHHHHHHHHhC
Confidence 3446789999999999999999999999999999999999999999999999999999986 4999999999999999
Q ss_pred CCceEEEEeccC-------Ccc----------chHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEc
Q 013180 152 PECHIDAKVLLY-------DAS----------SEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCAT 207 (448)
Q Consensus 152 P~v~v~~~~~~~-------~~~----------~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~ 207 (448)
|.++-..+...+ .++ .+++++.. .|+|+-.+|+.++|..=.-.|...++-+|+++
T Consensus 411 P~m~atG~~lsIPMpGH~I~e~~~e~~~~D~~~Le~LI~~-HDviFLLtDsRESRWLPtll~a~~~KivINaA 482 (669)
T KOG2337|consen 411 PSMEATGYVLSIPMPGHPIGESLLEQTKKDLKRLEQLIKD-HDVIFLLTDSRESRWLPTLLAAAKNKIVINAA 482 (669)
T ss_pred ccccccceEEeccCCCCccchhhHHHHHHHHHHHHHHHhh-cceEEEEeccchhhhhHHHHHhhhcceEeeee
Confidence 999877654332 222 23345565 99999999999999887788888888888865
No 53
>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]
Probab=98.69 E-value=1.2e-07 Score=85.76 Aligned_cols=142 Identities=24% Similarity=0.326 Sum_probs=113.0
Q ss_pred CCcEEEEcCChHHHHHHHHHH---HcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe
Q 013180 84 GSYVVVIGLGGVGSHAAAMLL---RSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV 160 (448)
Q Consensus 84 ~~~VlVVG~GGvGs~va~~La---rsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~ 160 (448)
.-.|.++|||-+|--++..|. |-|..+|.++|...|++.++---.+ -..+|.+|++.++ ++....+.-+|++++
T Consensus 18 rGeV~l~G~GRLG~Rval~Lle~HRGGperi~v~Dgqrve~dDiihrr~--Ga~~GEyKv~Fi~-rl~~~~f~r~V~a~p 94 (217)
T COG4015 18 RGEVSLIGCGRLGVRVALDLLEVHRGGPERIYVFDGQRVEEDDIIHRRL--GAKVGEYKVDFIK-RLGRVHFGRRVEAFP 94 (217)
T ss_pred CceEEEEeccchhHHHHHHHHHHhcCCCeEEEEecCcccCchhhHHHHh--CCCcchhHHHHHH-HhCcCCCCceeeccc
Confidence 456999999999999999998 7899999999999999999754322 4689999999875 566777888999999
Q ss_pred ccCCccchHHHhcCCCCeEEEcc---CCHHHHHHHHHHHHHcCCcEEEEcCCCCccCCCceEEcccccccCChhhH
Q 013180 161 LLYDASSEEEILSGHPDFVLDCI---DNIDTKVALLAACVRRGLKVLCATGAGARADPTRIRVADLRESTNDPLSR 233 (448)
Q Consensus 161 ~~~~~~~~~~ll~~~~D~VIda~---Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~dpt~i~i~di~~~~~dpl~~ 233 (448)
+.++.+|+..+. -|+|+-|+ |...+-..|.++|++.|+.-|+.+|.-+-+ ...+++.|+.+... |...
T Consensus 95 E~it~dNlhll~---gDVvvi~IAGGdT~PvTaaii~ya~~rG~~TisT~GVFGig-eEev~v~~~eeA~g-P~~~ 165 (217)
T COG4015 95 ENITKDNLHLLK---GDVVVICIAGGDTIPVTAAIINYAKERGIKTISTNGVFGIG-EEEVKVCDAEEAKG-PAKF 165 (217)
T ss_pred ccccccchhhhc---CCEEEEEecCCCcchhHHHHHHHHHHcCceEeecCceeecc-hhheEEeehhhcCc-cHHH
Confidence 999999987664 38887776 577788899999999999999988763321 34566666666544 4433
No 54
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=98.23 E-value=1.2e-05 Score=76.49 Aligned_cols=93 Identities=15% Similarity=0.216 Sum_probs=64.1
Q ss_pred HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe
Q 013180 81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV 160 (448)
Q Consensus 81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~ 160 (448)
.|++++|+|||.|.+|...++.|...| .++++|+.+. .. .+.++.+.-.+....
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~g-a~V~VIs~~~------~~-------------------~l~~l~~~~~i~~~~ 60 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKYG-AHIVVISPEL------TE-------------------NLVKLVEEGKIRWKQ 60 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCC-CeEEEEcCCC------CH-------------------HHHHHHhCCCEEEEe
Confidence 478999999999999999999999999 6899987541 11 111111111233333
Q ss_pred ccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEE
Q 013180 161 LLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLC 205 (448)
Q Consensus 161 ~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~ 205 (448)
..+.. ..+. .+|+||.||++.+....+.+.| +.++++-.
T Consensus 61 ~~~~~----~~l~-~adlViaaT~d~elN~~i~~~a-~~~~lvn~ 99 (202)
T PRK06718 61 KEFEP----SDIV-DAFLVIAATNDPRVNEQVKEDL-PENALFNV 99 (202)
T ss_pred cCCCh----hhcC-CceEEEEcCCCHHHHHHHHHHH-HhCCcEEE
Confidence 33332 2234 3999999999999999999999 45675533
No 55
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=98.18 E-value=2.9e-05 Score=70.93 Aligned_cols=125 Identities=14% Similarity=0.200 Sum_probs=83.8
Q ss_pred HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe
Q 013180 81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV 160 (448)
Q Consensus 81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~ 160 (448)
.|++++|+|||.|.+|...++.|...|. ++++|+++..+. + .++ +. +....
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga-~V~VIsp~~~~~--l-----------------------~~l-~~--i~~~~ 60 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDTGA-FVTVVSPEICKE--M-----------------------KEL-PY--ITWKQ 60 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCccCHH--H-----------------------Hhc-cC--cEEEe
Confidence 5789999999999999999999999995 699987663211 0 111 11 22223
Q ss_pred ccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCC---CCccCCCceEEccccc-----ccCChhh
Q 013180 161 LLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGA---GARADPTRIRVADLRE-----STNDPLS 232 (448)
Q Consensus 161 ~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~---G~k~dpt~i~i~di~~-----~~~dpl~ 232 (448)
..+.++. +. ++|+||.|+|+.+....+...|+++ .++ +.... +...-|..++-+|+.- ....-++
T Consensus 61 ~~~~~~d----l~-~a~lViaaT~d~e~N~~i~~~a~~~-~~v-n~~d~~~~~~f~~pa~v~~~~l~iaisT~G~sP~la 133 (157)
T PRK06719 61 KTFSNDD----IK-DAHLIYAATNQHAVNMMVKQAAHDF-QWV-NVVSDGTESSFHTPGVIRNDEYVVTISTSGKDPSFT 133 (157)
T ss_pred cccChhc----CC-CceEEEECCCCHHHHHHHHHHHHHC-CcE-EECCCCCcCcEEeeeEEEECCeEEEEECCCcChHHH
Confidence 3344332 33 3999999999999999999999875 444 33222 2234477666666633 3355677
Q ss_pred HHHHHHHhh
Q 013180 233 RAVMHRLRK 241 (448)
Q Consensus 233 ~~~r~~l~~ 241 (448)
+.+|+++..
T Consensus 134 ~~lr~~ie~ 142 (157)
T PRK06719 134 KRLKQELTS 142 (157)
T ss_pred HHHHHHHHH
Confidence 788888766
No 56
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=98.16 E-value=2.4e-05 Score=74.55 Aligned_cols=129 Identities=22% Similarity=0.289 Sum_probs=83.9
Q ss_pred hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180 82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL 161 (448)
Q Consensus 82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~ 161 (448)
|++++|+|||.|.+|..-+..|...|. ++++|+++.- +. +.+ +.+. -+++.+..
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~ga-~VtVvsp~~~------------------~~---l~~-l~~~---~~i~~~~~ 60 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAGA-QLRVIAEELE------------------SE---LTL-LAEQ---GGITWLAR 60 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCC-EEEEEcCCCC------------------HH---HHH-HHHc---CCEEEEeC
Confidence 788999999999999999999999995 7999987621 00 111 1111 13444444
Q ss_pred cCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEc--CCCCccCCCceEEccccc-----ccCChhhHH
Q 013180 162 LYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCAT--GAGARADPTRIRVADLRE-----STNDPLSRA 234 (448)
Q Consensus 162 ~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~--g~G~k~dpt~i~i~di~~-----~~~dpl~~~ 234 (448)
.+.. ..+.+ +|+||-|+|+.+....+...|++.++|+-.+. ..+...-|..++-+++.- ....-+++.
T Consensus 61 ~~~~----~dl~~-~~lVi~at~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~f~~pa~~~~g~l~iaisT~G~sP~la~~ 135 (205)
T TIGR01470 61 CFDA----DILEG-AFLVIAATDDEELNRRVAHAARARGVPVNVVDDPELCSFIFPSIVDRSPVVVAISSGGAAPVLARL 135 (205)
T ss_pred CCCH----HHhCC-cEEEEECCCCHHHHHHHHHHHHHcCCEEEECCCcccCeEEEeeEEEcCCEEEEEECCCCCcHHHHH
Confidence 4442 33454 99999999999999999999999999984432 223333355444444322 223344445
Q ss_pred HHHHHhh
Q 013180 235 VMHRLRK 241 (448)
Q Consensus 235 ~r~~l~~ 241 (448)
+|.++.+
T Consensus 136 lr~~ie~ 142 (205)
T TIGR01470 136 LRERIET 142 (205)
T ss_pred HHHHHHH
Confidence 5555544
No 57
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=98.05 E-value=1.9e-05 Score=78.96 Aligned_cols=77 Identities=31% Similarity=0.431 Sum_probs=60.3
Q ss_pred hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180 82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL 161 (448)
Q Consensus 82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~ 161 (448)
++.++|+|+|+||+|..++..|+..|+++|+|+|.+ ..|++.+++.+.+.+|.+.+...
T Consensus 125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~-------------------~~ka~~la~~l~~~~~~~~~~~~-- 183 (284)
T PRK12549 125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD-------------------PARAAALADELNARFPAARATAG-- 183 (284)
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC-------------------HHHHHHHHHHHHhhCCCeEEEec--
Confidence 567899999999999999999999999999998765 26899999999887776554332
Q ss_pred cCCccchHHHhcCCCCeEEEccC
Q 013180 162 LYDASSEEEILSGHPDFVLDCID 184 (448)
Q Consensus 162 ~~~~~~~~~ll~~~~D~VIda~D 184 (448)
++..+.+. ++|+||+||-
T Consensus 184 ----~~~~~~~~-~aDiVInaTp 201 (284)
T PRK12549 184 ----SDLAAALA-AADGLVHATP 201 (284)
T ss_pred ----cchHhhhC-CCCEEEECCc
Confidence 12233344 3999999874
No 58
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.98 E-value=4.7e-05 Score=78.95 Aligned_cols=97 Identities=23% Similarity=0.362 Sum_probs=68.8
Q ss_pred CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccC-
Q 013180 85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY- 163 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~- 163 (448)
.+|+|+|||+||+.+|.+|++.|.++|++.|... .|...+.... -+ ++++..-..
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~-------------------~~~~~i~~~~---~~--~v~~~~vD~~ 57 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK-------------------EKCARIAELI---GG--KVEALQVDAA 57 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCH-------------------HHHHHHHhhc---cc--cceeEEeccc
Confidence 5899999999999999999999999999976431 1111111111 11 454444333
Q ss_pred CccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEc
Q 013180 164 DASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCAT 207 (448)
Q Consensus 164 ~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~ 207 (448)
+.+.+.+++.+ +|+||+|...+-.. .+.++|-+.|+++++.+
T Consensus 58 d~~al~~li~~-~d~VIn~~p~~~~~-~i~ka~i~~gv~yvDts 99 (389)
T COG1748 58 DVDALVALIKD-FDLVINAAPPFVDL-TILKACIKTGVDYVDTS 99 (389)
T ss_pred ChHHHHHHHhc-CCEEEEeCCchhhH-HHHHHHHHhCCCEEEcc
Confidence 33456677876 89999999876655 77789999999999865
No 59
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.94 E-value=4e-05 Score=68.06 Aligned_cols=80 Identities=31% Similarity=0.421 Sum_probs=58.8
Q ss_pred HHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEE
Q 013180 80 QKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK 159 (448)
Q Consensus 80 ~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~ 159 (448)
..+++++|+|+|+||.|..++.+|+..|+++|+|+ ||.. .|++.+++.+ +...+...
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~----------nRt~---------~ra~~l~~~~----~~~~~~~~ 64 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAALGAKEITIV----------NRTP---------ERAEALAEEF----GGVNIEAI 64 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEE----------ESSH---------HHHHHHHHHH----TGCSEEEE
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEE----------ECCH---------HHHHHHHHHc----Ccccccee
Confidence 36899999999999999999999999999999994 5653 4777777776 44445443
Q ss_pred eccCCccchHHHhcCCCCeEEEccCCHH
Q 013180 160 VLLYDASSEEEILSGHPDFVLDCIDNID 187 (448)
Q Consensus 160 ~~~~~~~~~~~ll~~~~D~VIda~Dn~~ 187 (448)
.- +...+.+.. +|+||.|+....
T Consensus 65 ~~----~~~~~~~~~-~DivI~aT~~~~ 87 (135)
T PF01488_consen 65 PL----EDLEEALQE-ADIVINATPSGM 87 (135)
T ss_dssp EG----GGHCHHHHT-ESEEEE-SSTTS
T ss_pred eH----HHHHHHHhh-CCeEEEecCCCC
Confidence 32 223345554 999999988643
No 60
>TIGR03882 cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydratase domain. This model describes a ThiF-like domain of a fusion protein found in clusters associated with the production of TOMMs (thiazole/oxazole-modified microcins), small bacteriocins with characteristic heterocycle modifications. This domain is presumed to act as a cyclodehydratase, as do members of the SagC family modeled by TIGR03603.
Probab=97.89 E-value=1.3e-05 Score=75.76 Aligned_cols=38 Identities=21% Similarity=0.260 Sum_probs=34.4
Q ss_pred CHHHHHHhhCCcEEEEcCChHHHH-HHHHHHHcCCceEE
Q 013180 75 GVESQQKVSGSYVVVIGLGGVGSH-AAAMLLRSGVGRLL 112 (448)
Q Consensus 75 G~~~q~kL~~~~VlVVG~GGvGs~-va~~LarsGVg~i~ 112 (448)
+.+.++++++++|.|+|.|+.|+. ++..|+.+||+.+.
T Consensus 96 ~~~a~~~l~~~~V~V~~~G~~~~~~l~~aLaa~Gv~~~~ 134 (193)
T TIGR03882 96 PAAALERLRQLTVTVLSFGEGGAAALAAALAAAGIRIAP 134 (193)
T ss_pred HHHHHHHHhcCcEEEEecCCCcHHHHHHHHHHcCCCccC
Confidence 456789999999999999999999 99999999999764
No 61
>PF05237 MoeZ_MoeB: MoeZ/MoeB domain; InterPro: IPR007901 This putative domain is found in the MoeZ protein and the MoeB protein. The domain has two CXXC motifs that are only partly conserved. MoeZ is necessary for the synthesis of pyridine-2,6-bis(thiocarboxylic acid), a small secreted metabolite that has a high affinity for transition metals, increases iron uptake efficiency by 20% in Pseudomonas stutzeri, has the ability to reduce both soluble and mineral forms of iron, and has antimicrobial activity towards several species of bacteria. MoeB is the molybdopterin synthase activating enzyme in the molybdopterin cofactor biosynthesis pathway. Both these enzymes are members of a superfamily consisting of related but structurally distinct proteins that are members of pathways involved in the transfer of sulphur-containing moieties to metabolites [] and both also contain the UBA/THIF-type NAD/FAD binding fold (IPR000594 from INTERPRO). ; PDB: 1JWA_B 1JW9_B 1JWB_B 1ZKM_D 1ZUD_3 1ZFN_D.
Probab=97.74 E-value=1.2e-05 Score=65.70 Aligned_cols=48 Identities=23% Similarity=0.334 Sum_probs=30.9
Q ss_pred CCCcccCCCCCCCCCCCCCCCCCCccCCcccccCCcccchHHHHHHHHHHHHHHHHHcCC
Q 013180 256 EKPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGSIPAIFGMVMASHVVTQLAERQ 315 (448)
Q Consensus 256 e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvlg~~~~i~G~~~A~~vi~~l~g~~ 315 (448)
++||++|+ +++.+ +. . ..+...|||||+++++|+++|+|+||+|+|..
T Consensus 2 ~~pC~rCl-~p~~~--~~-------~--~~C~~~GVlg~~~giigslqA~eaik~l~g~~ 49 (84)
T PF05237_consen 2 KTPCYRCL-FPEPP--ES-------A--PTCAEAGVLGPVVGIIGSLQANEAIKLLLGIG 49 (84)
T ss_dssp T---HHHH-HTTSS-----------T--TSSSTS-B-HHHHHHHHHHHHHHHHHHHCT-S
T ss_pred CCceehhc-CCCCC--cc-------C--CCccccccccchHHHHHHHHHHHHHHHHHhcC
Confidence 57899988 44321 11 1 12456799999999999999999999999863
No 62
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=97.70 E-value=0.00038 Score=67.15 Aligned_cols=130 Identities=12% Similarity=0.120 Sum_probs=83.9
Q ss_pred HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe
Q 013180 81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV 160 (448)
Q Consensus 81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~ 160 (448)
++++.+|+|||.|.++..=+..|..+| .+|++|-++.-. .... +. .++. |+.+.
T Consensus 22 ~~~~~~VLVVGGG~VA~RK~~~Ll~~g-A~VtVVap~i~~------------------el~~----l~-~~~~--i~~~~ 75 (223)
T PRK05562 22 LSNKIKVLIIGGGKAAFIKGKTFLKKG-CYVYILSKKFSK------------------EFLD----LK-KYGN--LKLIK 75 (223)
T ss_pred ECCCCEEEEECCCHHHHHHHHHHHhCC-CEEEEEcCCCCH------------------HHHH----HH-hCCC--EEEEe
Confidence 567899999999999999999999999 569998776210 0000 10 1222 44444
Q ss_pred ccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCC--CCccCCCceEEcccc-----cccCChhhH
Q 013180 161 LLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGA--GARADPTRIRVADLR-----ESTNDPLSR 233 (448)
Q Consensus 161 ~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~--G~k~dpt~i~i~di~-----~~~~dpl~~ 233 (448)
..+.++ .+.+ +++||.|||+.+.-..+.+.|++.++++..+.-- +...-|..++-+++. .....-+++
T Consensus 76 r~~~~~----dl~g-~~LViaATdD~~vN~~I~~~a~~~~~lvn~vd~p~~~dFi~PAiv~rg~l~IaIST~G~sP~lar 150 (223)
T PRK05562 76 GNYDKE----FIKD-KHLIVIATDDEKLNNKIRKHCDRLYKLYIDCSDYKKGLCIIPYQRSTKNFVFALNTKGGSPKTSV 150 (223)
T ss_pred CCCChH----HhCC-CcEEEECCCCHHHHHHHHHHHHHcCCeEEEcCCcccCeEEeeeEEecCCEEEEEECCCcCcHHHH
Confidence 555443 3444 9999999999999999999999999988775421 112224433333322 222334555
Q ss_pred HHHHHHhh
Q 013180 234 AVMHRLRK 241 (448)
Q Consensus 234 ~~r~~l~~ 241 (448)
.+|.+|.+
T Consensus 151 ~lR~~ie~ 158 (223)
T PRK05562 151 FIGEKVKN 158 (223)
T ss_pred HHHHHHHH
Confidence 56655554
No 63
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=97.70 E-value=9.4e-05 Score=62.61 Aligned_cols=88 Identities=25% Similarity=0.393 Sum_probs=63.8
Q ss_pred HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe
Q 013180 81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV 160 (448)
Q Consensus 81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~ 160 (448)
.|++++|+|||.|.+|..-+..|..+| .+++++..+. +... ..+++ ..
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~g-A~v~vis~~~-~~~~----------------------------~~i~~--~~ 51 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAG-AKVTVISPEI-EFSE----------------------------GLIQL--IR 51 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCT-BEEEEEESSE-HHHH----------------------------TSCEE--EE
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCC-CEEEEECCch-hhhh----------------------------hHHHH--Hh
Confidence 478999999999999999999999999 7899998885 1000 11222 22
Q ss_pred ccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEE
Q 013180 161 LLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCA 206 (448)
Q Consensus 161 ~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~ 206 (448)
..+. +.+.+ +|+|+.|+++......+.+.|+++++|+-.+
T Consensus 52 ~~~~-----~~l~~-~~lV~~at~d~~~n~~i~~~a~~~~i~vn~~ 91 (103)
T PF13241_consen 52 REFE-----EDLDG-ADLVFAATDDPELNEAIYADARARGILVNVV 91 (103)
T ss_dssp SS-G-----GGCTT-ESEEEE-SS-HHHHHHHHHHHHHTTSEEEET
T ss_pred hhHH-----HHHhh-heEEEecCCCHHHHHHHHHHHhhCCEEEEEC
Confidence 2231 22444 9999999999999999999999999988764
No 64
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=97.42 E-value=0.00071 Score=70.10 Aligned_cols=95 Identities=27% Similarity=0.406 Sum_probs=64.0
Q ss_pred EEEEcCChHHHHHHHHHHHcCCc-eEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccC-C
Q 013180 87 VVVIGLGGVGSHAAAMLLRSGVG-RLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY-D 164 (448)
Q Consensus 87 VlVVG~GGvGs~va~~LarsGVg-~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~-~ 164 (448)
|+|+|+|.+|+.++..|++.+-- ++++.|.+. .|++.+.+.+ ...++....... +
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~-------------------~~~~~~~~~~----~~~~~~~~~~d~~~ 57 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNP-------------------EKAERLAEKL----LGDRVEAVQVDVND 57 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSH-------------------HHHHHHHT------TTTTEEEEE--TTT
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCH-------------------HHHHHHHhhc----cccceeEEEEecCC
Confidence 79999999999999999999854 899977652 2333333332 223444444333 3
Q ss_pred ccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEE
Q 013180 165 ASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCA 206 (448)
Q Consensus 165 ~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~ 206 (448)
.+.+.+++.+ +|+||+|...+ ....+.+.|.+.|+++|+.
T Consensus 58 ~~~l~~~~~~-~dvVin~~gp~-~~~~v~~~~i~~g~~yvD~ 97 (386)
T PF03435_consen 58 PESLAELLRG-CDVVINCAGPF-FGEPVARACIEAGVHYVDT 97 (386)
T ss_dssp HHHHHHHHTT-SSEEEE-SSGG-GHHHHHHHHHHHT-EEEES
T ss_pred HHHHHHHHhc-CCEEEECCccc-hhHHHHHHHHHhCCCeecc
Confidence 4446777776 99999999887 6678899999999999994
No 65
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=97.38 E-value=0.00065 Score=67.93 Aligned_cols=79 Identities=27% Similarity=0.384 Sum_probs=55.2
Q ss_pred hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180 82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL 161 (448)
Q Consensus 82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~ 161 (448)
+++++|+|+|+||.|..++..|+..|+.+|+|+|.+ . .|++.+++++....+...+...
T Consensus 125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~----------~---------~ka~~La~~~~~~~~~~~~~~~-- 183 (283)
T PRK14027 125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLD----------T---------SRAQALADVINNAVGREAVVGV-- 183 (283)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC----------H---------HHHHHHHHHHhhccCcceEEec--
Confidence 457899999999999999999999999999997543 1 3888888877654443223221
Q ss_pred cCCccchHHHhcCCCCeEEEccC
Q 013180 162 LYDASSEEEILSGHPDFVLDCID 184 (448)
Q Consensus 162 ~~~~~~~~~ll~~~~D~VIda~D 184 (448)
+..+..+.+. ++|+||+|+-
T Consensus 184 --~~~~~~~~~~-~~divINaTp 203 (283)
T PRK14027 184 --DARGIEDVIA-AADGVVNATP 203 (283)
T ss_pred --CHhHHHHHHh-hcCEEEEcCC
Confidence 1111222334 4899999874
No 66
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=97.38 E-value=0.00066 Score=65.01 Aligned_cols=96 Identities=23% Similarity=0.270 Sum_probs=67.8
Q ss_pred HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe
Q 013180 81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV 160 (448)
Q Consensus 81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~ 160 (448)
.|.+++|+|||.|.+|..=++.|..+| .+++++-++. + +.... +.+.++ +.-+.
T Consensus 9 ~l~~k~VlvvGgG~va~rKa~~ll~~g-a~v~Vvs~~~-~-----------------~el~~----~~~~~~---i~~~~ 62 (210)
T COG1648 9 DLEGKKVLVVGGGSVALRKARLLLKAG-ADVTVVSPEF-E-----------------PELKA----LIEEGK---IKWIE 62 (210)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhcC-CEEEEEcCCc-c-----------------HHHHH----HHHhcC---cchhh
Confidence 478899999999999999999999999 5688866554 1 11111 111111 22222
Q ss_pred ccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEc
Q 013180 161 LLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCAT 207 (448)
Q Consensus 161 ~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~ 207 (448)
..+.. +.+.+ +++||-||||.+....+.+.|.++++|+-.+.
T Consensus 63 ~~~~~----~~~~~-~~lviaAt~d~~ln~~i~~~a~~~~i~vNv~D 104 (210)
T COG1648 63 REFDA----EDLDD-AFLVIAATDDEELNERIAKAARERRILVNVVD 104 (210)
T ss_pred cccCh----hhhcC-ceEEEEeCCCHHHHHHHHHHHHHhCCceeccC
Confidence 33332 23333 99999999999999999999999999876543
No 67
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=97.29 E-value=0.0031 Score=55.13 Aligned_cols=94 Identities=27% Similarity=0.361 Sum_probs=62.0
Q ss_pred cEEEEcC-ChHHHHHHHHHHH-cCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhC-CCceEEEEecc
Q 013180 86 YVVVIGL-GGVGSHAAAMLLR-SGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIF-PECHIDAKVLL 162 (448)
Q Consensus 86 ~VlVVG~-GGvGs~va~~Lar-sGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~in-P~v~v~~~~~~ 162 (448)
||+|+|+ |-.|+.+++.+.. .|+.=...+|... +. +-..|+|. +..+. ..+.+
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~---~~------~~g~d~g~---------~~~~~~~~~~v------ 57 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKP---SA------KVGKDVGE---------LAGIGPLGVPV------ 57 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTT---ST------TTTSBCHH---------HCTSST-SSBE------
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCC---cc------cccchhhh---------hhCcCCccccc------
Confidence 7999999 9999999999999 6666566666553 10 11234441 11111 11222
Q ss_pred CCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEc
Q 013180 163 YDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCAT 207 (448)
Q Consensus 163 ~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~ 207 (448)
.++.++++.. +|+|||++ +++.-....++|.++++|+|.+.
T Consensus 58 --~~~l~~~~~~-~DVvIDfT-~p~~~~~~~~~~~~~g~~~ViGT 98 (124)
T PF01113_consen 58 --TDDLEELLEE-ADVVIDFT-NPDAVYDNLEYALKHGVPLVIGT 98 (124)
T ss_dssp --BS-HHHHTTH--SEEEEES--HHHHHHHHHHHHHHT-EEEEE-
T ss_pred --chhHHHhccc-CCEEEEcC-ChHHhHHHHHHHHhCCCCEEEEC
Confidence 1456677776 99999999 88888889999999999999965
No 68
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=97.07 E-value=0.0029 Score=63.34 Aligned_cols=84 Identities=15% Similarity=0.263 Sum_probs=55.7
Q ss_pred hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180 82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL 161 (448)
Q Consensus 82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~ 161 (448)
+++++|+|+|+||+|..++..|+..|+.+|+|++.+.- ...|++.+.+.+.+..+.+.+...+
T Consensus 124 ~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~----------------~~~~a~~l~~~l~~~~~~~~~~~~d- 186 (289)
T PRK12548 124 VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDD----------------FYERAEQTAEKIKQEVPECIVNVYD- 186 (289)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCch----------------HHHHHHHHHHHHhhcCCCceeEEec-
Confidence 56789999999999999999999999999999664210 1135666666666555554443322
Q ss_pred cCC-ccchHHHhcCCCCeEEEccC
Q 013180 162 LYD-ASSEEEILSGHPDFVLDCID 184 (448)
Q Consensus 162 ~~~-~~~~~~ll~~~~D~VIda~D 184 (448)
++ .+...+.+.. +|+||+||-
T Consensus 187 -~~~~~~~~~~~~~-~DilINaTp 208 (289)
T PRK12548 187 -LNDTEKLKAEIAS-SDILVNATL 208 (289)
T ss_pred -hhhhhHHHhhhcc-CCEEEEeCC
Confidence 22 1223334443 788887763
No 69
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=97.02 E-value=0.0021 Score=64.21 Aligned_cols=78 Identities=21% Similarity=0.205 Sum_probs=53.2
Q ss_pred hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180 82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL 161 (448)
Q Consensus 82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~ 161 (448)
+++++|+|+|+||.|..++..|+..|+.+|+|++ |. ..|++.+++++..... +....
T Consensus 123 ~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~n----------Rt---------~~ka~~La~~~~~~~~---~~~~~- 179 (282)
T TIGR01809 123 LAGFRGLVIGAGGTSRAAVYALASLGVTDITVIN----------RN---------PDKLSRLVDLGVQVGV---ITRLE- 179 (282)
T ss_pred cCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEe----------CC---------HHHHHHHHHHhhhcCc---ceecc-
Confidence 5678999999999999999999999999999964 43 2477777776643311 11111
Q ss_pred cCCccchHHHhcCCCCeEEEccCC
Q 013180 162 LYDASSEEEILSGHPDFVLDCIDN 185 (448)
Q Consensus 162 ~~~~~~~~~ll~~~~D~VIda~Dn 185 (448)
..+.....+. .+|+||+|+--
T Consensus 180 --~~~~~~~~~~-~~DiVInaTp~ 200 (282)
T TIGR01809 180 --GDSGGLAIEK-AAEVLVSTVPA 200 (282)
T ss_pred --chhhhhhccc-CCCEEEECCCC
Confidence 0011223334 49999999864
No 70
>PRK10637 cysG siroheme synthase; Provisional
Probab=96.97 E-value=0.0092 Score=63.62 Aligned_cols=132 Identities=17% Similarity=0.203 Sum_probs=88.0
Q ss_pred HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe
Q 013180 81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV 160 (448)
Q Consensus 81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~ 160 (448)
.|++++|+|||.|.|+..=++.|..+|. ++++|-++.- +.+.++...-+|+.+.
T Consensus 9 ~l~~~~vlvvGgG~vA~rk~~~ll~~ga-~v~visp~~~-------------------------~~~~~l~~~~~i~~~~ 62 (457)
T PRK10637 9 QLRDRDCLLVGGGDVAERKARLLLDAGA-RLTVNALAFI-------------------------PQFTAWADAGMLTLVE 62 (457)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCCC-------------------------HHHHHHHhCCCEEEEe
Confidence 5789999999999999999999999995 6999755411 0111111112344444
Q ss_pred ccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcC--CCCccCCCceEEccc-----ccccCChhhH
Q 013180 161 LLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATG--AGARADPTRIRVADL-----RESTNDPLSR 233 (448)
Q Consensus 161 ~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g--~G~k~dpt~i~i~di-----~~~~~dpl~~ 233 (448)
..+.+ +.+.+ +++||.||||.+....|.+.|++.++++-.+.- .+...-|..++-+++ +.....-+++
T Consensus 63 ~~~~~----~dl~~-~~lv~~at~d~~~n~~i~~~a~~~~~lvN~~d~~~~~~f~~pa~~~~g~l~iaisT~G~sP~~a~ 137 (457)
T PRK10637 63 GPFDE----SLLDT-CWLAIAATDDDAVNQRVSEAAEARRIFCNVVDAPKAASFIMPSIIDRSPLMVAVSSGGTSPVLAR 137 (457)
T ss_pred CCCCh----HHhCC-CEEEEECCCCHHHhHHHHHHHHHcCcEEEECCCcccCeEEEeeEEecCCEEEEEECCCCCcHHHH
Confidence 54543 33454 999999999999999999999999998655432 122233544433333 2334456777
Q ss_pred HHHHHHhhhc
Q 013180 234 AVMHRLRKDY 243 (448)
Q Consensus 234 ~~r~~l~~~~ 243 (448)
.+|.++....
T Consensus 138 ~lr~~ie~~~ 147 (457)
T PRK10637 138 LLREKLESLL 147 (457)
T ss_pred HHHHHHHHhc
Confidence 8888887754
No 71
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=96.95 E-value=0.0045 Score=64.85 Aligned_cols=76 Identities=25% Similarity=0.316 Sum_probs=60.6
Q ss_pred hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180 82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL 161 (448)
Q Consensus 82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~ 161 (448)
|++++|+|||+|-.|.-+|++|+..|+.+|++ .||+. .|++-+++++. .++.
T Consensus 176 L~~~~vlvIGAGem~~lva~~L~~~g~~~i~I----------aNRT~---------erA~~La~~~~-----~~~~---- 227 (414)
T COG0373 176 LKDKKVLVIGAGEMGELVAKHLAEKGVKKITI----------ANRTL---------ERAEELAKKLG-----AEAV---- 227 (414)
T ss_pred cccCeEEEEcccHHHHHHHHHHHhCCCCEEEE----------EcCCH---------HHHHHHHHHhC-----Ceee----
Confidence 89999999999999999999999999999999 89986 37888888776 2222
Q ss_pred cCCccchHHHhcCCCCeEEEccCCHHH
Q 013180 162 LYDASSEEEILSGHPDFVLDCIDNIDT 188 (448)
Q Consensus 162 ~~~~~~~~~ll~~~~D~VIda~Dn~~~ 188 (448)
.-+...+.+.. +|+||.||..+..
T Consensus 228 --~l~el~~~l~~-~DvVissTsa~~~ 251 (414)
T COG0373 228 --ALEELLEALAE-ADVVISSTSAPHP 251 (414)
T ss_pred --cHHHHHHhhhh-CCEEEEecCCCcc
Confidence 22334555664 9999999886543
No 72
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=96.80 E-value=0.0037 Score=62.54 Aligned_cols=76 Identities=21% Similarity=0.320 Sum_probs=55.9
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180 83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL 162 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~ 162 (448)
++++|+|+|+||.+..++..|+..|+.+|+| .||.. .|++.+++.+.+..+.+.......
T Consensus 125 ~~~~vlilGAGGAarAv~~aL~~~g~~~i~V----------~NRt~---------~ra~~La~~~~~~~~~~~~~~~~~- 184 (283)
T COG0169 125 TGKRVLILGAGGAARAVAFALAEAGAKRITV----------VNRTR---------ERAEELADLFGELGAAVEAAALAD- 184 (283)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCEEEE----------EeCCH---------HHHHHHHHHhhhcccccccccccc-
Confidence 4689999999999999999999999999999 56653 588888888888776322221111
Q ss_pred CCccchHHHhcCCCCeEEEccCC
Q 013180 163 YDASSEEEILSGHPDFVLDCIDN 185 (448)
Q Consensus 163 ~~~~~~~~ll~~~~D~VIda~Dn 185 (448)
.+.. . ++|+||+||--
T Consensus 185 --~~~~----~-~~dliINaTp~ 200 (283)
T COG0169 185 --LEGL----E-EADLLINATPV 200 (283)
T ss_pred --cccc----c-ccCEEEECCCC
Confidence 0111 1 38999988753
No 73
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.75 E-value=0.0078 Score=63.53 Aligned_cols=96 Identities=20% Similarity=0.246 Sum_probs=61.0
Q ss_pred hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180 82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL 161 (448)
Q Consensus 82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~ 161 (448)
+++++|+|+|+|++|..+|+.|+..|. +++++|.+.-+ ..+...+++.+.. ++ .+..
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~-~V~~~d~~~~~------------------~~~~~~~~l~~~~--~~--~~~~ 59 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKLGA-KVILTDEKEED------------------QLKEALEELGELG--IE--LVLG 59 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchH------------------HHHHHHHHHHhcC--CE--EEeC
Confidence 678999999999999999999999996 69998876410 1111122333222 22 2222
Q ss_pred cCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEE
Q 013180 162 LYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCA 206 (448)
Q Consensus 162 ~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~ 206 (448)
... ++... .+|+||.++..... ..+...|+++|+|++.-
T Consensus 60 ~~~----~~~~~-~~d~vv~~~g~~~~-~~~~~~a~~~~i~~~~~ 98 (450)
T PRK14106 60 EYP----EEFLE-GVDLVVVSPGVPLD-SPPVVQAHKKGIEVIGE 98 (450)
T ss_pred Ccc----hhHhh-cCCEEEECCCCCCC-CHHHHHHHHCCCcEEeH
Confidence 111 23344 49999998875333 33566677777777663
No 74
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=96.74 E-value=0.0033 Score=66.16 Aligned_cols=77 Identities=18% Similarity=0.327 Sum_probs=55.8
Q ss_pred HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe
Q 013180 81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV 160 (448)
Q Consensus 81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~ 160 (448)
.+.+++|+|+|+||.|..++++|+..|+.+|++ .||.. .|++.+++.+.. .++..
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V----------~nRt~---------~ra~~La~~~~~----~~~~~-- 232 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIML----------ANRTI---------EKAQKITSAFRN----ASAHY-- 232 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEE----------ECCCH---------HHHHHHHHHhcC----CeEec--
Confidence 477899999999999999999999999999999 56652 366666655431 12211
Q ss_pred ccCCccchHHHhcCCCCeEEEccCCHH
Q 013180 161 LLYDASSEEEILSGHPDFVLDCIDNID 187 (448)
Q Consensus 161 ~~~~~~~~~~ll~~~~D~VIda~Dn~~ 187 (448)
+ +...+.+.. +|+||.||..+.
T Consensus 233 --~--~~l~~~l~~-aDiVI~aT~a~~ 254 (414)
T PRK13940 233 --L--SELPQLIKK-ADIIIAAVNVLE 254 (414)
T ss_pred --H--HHHHHHhcc-CCEEEECcCCCC
Confidence 1 233455664 999999998754
No 75
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=96.71 E-value=0.0098 Score=56.41 Aligned_cols=36 Identities=39% Similarity=0.660 Sum_probs=32.2
Q ss_pred HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
.|++++|+|+|+|.+|+.+++.|...|. ++.++|.+
T Consensus 25 ~l~gk~v~I~G~G~vG~~~A~~L~~~G~-~Vvv~D~~ 60 (200)
T cd01075 25 SLEGKTVAVQGLGKVGYKLAEHLLEEGA-KLIVADIN 60 (200)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence 4788999999999999999999999997 67788765
No 76
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.69 E-value=0.016 Score=56.05 Aligned_cols=96 Identities=22% Similarity=0.262 Sum_probs=63.7
Q ss_pred CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhh-hCCCceEEEEecc-
Q 013180 85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSS-IFPECHIDAKVLL- 162 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~-inP~v~v~~~~~~- 162 (448)
++++|+|||-+|..+|+.|+..|- .+.+||.|. +++.+ +.......++...
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~-~Vv~Id~d~--------------------------~~~~~~~~~~~~~~~v~gd~ 53 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGH-NVVLIDRDE--------------------------ERVEEFLADELDTHVVIGDA 53 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCC-ceEEEEcCH--------------------------HHHHHHhhhhcceEEEEecC
Confidence 479999999999999999999995 477777762 11111 1111223333322
Q ss_pred CCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHH-cCCcEEEEc
Q 013180 163 YDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVR-RGLKVLCAT 207 (448)
Q Consensus 163 ~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~-~~ip~I~~~ 207 (448)
.+++.+.+.-..++|.+|-++++-.....+...+.+ +|+|-+.+-
T Consensus 54 t~~~~L~~agi~~aD~vva~t~~d~~N~i~~~la~~~~gv~~viar 99 (225)
T COG0569 54 TDEDVLEEAGIDDADAVVAATGNDEVNSVLALLALKEFGVPRVIAR 99 (225)
T ss_pred CCHHHHHhcCCCcCCEEEEeeCCCHHHHHHHHHHHHhcCCCcEEEE
Confidence 233334444234699999999997777777666655 899988865
No 77
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=96.67 E-value=0.0056 Score=60.88 Aligned_cols=76 Identities=21% Similarity=0.360 Sum_probs=52.1
Q ss_pred HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe
Q 013180 81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV 160 (448)
Q Consensus 81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~ 160 (448)
.+++++|+|+|+||+|..++..|...|+.++++++.+ ..|++.+++.+....+ +.+ .
T Consensus 120 ~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~-------------------~~~a~~l~~~~~~~~~-~~~---~ 176 (278)
T PRK00258 120 DLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRT-------------------VERAEELAKLFGALGK-AEL---D 176 (278)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCC-------------------HHHHHHHHHHhhhccc-eee---c
Confidence 3678899999999999999999999999999996542 1356666666543321 111 0
Q ss_pred ccCCccchHHHhcCCCCeEEEccCC
Q 013180 161 LLYDASSEEEILSGHPDFVLDCIDN 185 (448)
Q Consensus 161 ~~~~~~~~~~ll~~~~D~VIda~Dn 185 (448)
. ...+.+. ++|+||+|+-.
T Consensus 177 --~---~~~~~~~-~~DivInaTp~ 195 (278)
T PRK00258 177 --L---ELQEELA-DFDLIINATSA 195 (278)
T ss_pred --c---cchhccc-cCCEEEECCcC
Confidence 0 1123334 49999998753
No 78
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=96.66 E-value=0.0073 Score=60.56 Aligned_cols=83 Identities=19% Similarity=0.286 Sum_probs=54.5
Q ss_pred hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180 82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL 161 (448)
Q Consensus 82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~ 161 (448)
+++++|+|+|+||.+..++..|+..|+.+|+|++ |.. -...|++.+++++....+ +.+....
T Consensus 122 ~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~n----------Rt~------~~~~ka~~la~~~~~~~~-~~~~~~~- 183 (288)
T PRK12749 122 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFN----------RRD------EFFDKALAFAQRVNENTD-CVVTVTD- 183 (288)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEe----------CCc------cHHHHHHHHHHHhhhccC-ceEEEec-
Confidence 5678999999999999999999999999999955 321 024577888777754332 2222211
Q ss_pred cCCc-cchHHHhcCCCCeEEEccC
Q 013180 162 LYDA-SSEEEILSGHPDFVLDCID 184 (448)
Q Consensus 162 ~~~~-~~~~~ll~~~~D~VIda~D 184 (448)
+.. +...+.+. ++|+||+||-
T Consensus 184 -~~~~~~l~~~~~-~aDivINaTp 205 (288)
T PRK12749 184 -LADQQAFAEALA-SADILTNGTK 205 (288)
T ss_pred -hhhhhhhhhhcc-cCCEEEECCC
Confidence 111 11122233 4899998873
No 79
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=96.65 E-value=0.017 Score=58.53 Aligned_cols=84 Identities=24% Similarity=0.272 Sum_probs=57.8
Q ss_pred hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180 82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL 161 (448)
Q Consensus 82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~ 161 (448)
+.+.+|+|+|+|.+|..++++|...|+.+++++|.+. .|++.+++.+.. .+. .
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~-------------------~ra~~la~~~g~-----~~~--~- 228 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTY-------------------ERAEELAKELGG-----NAV--P- 228 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCH-------------------HHHHHHHHHcCC-----eEE--e-
Confidence 6899999999999999999999999999999976542 344444444321 111 1
Q ss_pred cCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHH
Q 013180 162 LYDASSEEEILSGHPDFVLDCIDNIDTKVALLAAC 196 (448)
Q Consensus 162 ~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c 196 (448)
.++..+.+.. +|+||.|+.+...+..+....
T Consensus 229 ---~~~~~~~l~~-aDvVi~at~~~~~~~~~~~~~ 259 (311)
T cd05213 229 ---LDELLELLNE-ADVVISATGAPHYAKIVERAM 259 (311)
T ss_pred ---HHHHHHHHhc-CCEEEECCCCCchHHHHHHHH
Confidence 1233444554 999999999887743344443
No 80
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=96.63 E-value=0.014 Score=61.51 Aligned_cols=37 Identities=35% Similarity=0.663 Sum_probs=33.6
Q ss_pred HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
.+.+++|+|+|+|.+|..++.+|...|+.+++++|.+
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs 213 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRT 213 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 3778999999999999999999999999999997653
No 81
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=96.36 E-value=0.021 Score=55.34 Aligned_cols=123 Identities=24% Similarity=0.282 Sum_probs=72.2
Q ss_pred HHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEE
Q 013180 80 QKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK 159 (448)
Q Consensus 80 ~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~ 159 (448)
..|++++|+|.|.|.||..+++.|...|..-+.+.|.+ ..++.++-+-..+....++.-..+...-..
T Consensus 27 ~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~---------g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~--- 94 (227)
T cd01076 27 IGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSD---------GTIYNPDGLDVPALLAYKKEHGSVLGFPGA--- 94 (227)
T ss_pred CCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC---------CeEECCCCCCHHHHHHHHHhcCCcccCCCc---
Confidence 56789999999999999999999999998877788765 334544434333333333322222111000
Q ss_pred eccCCccchHHHhcCCCCeEEEccCC-HHHHHHHHHHHHHcCCcEEEEcCCCCccCCCceEEcccccccCChhhHHHHHH
Q 013180 160 VLLYDASSEEEILSGHPDFVLDCIDN-IDTKVALLAACVRRGLKVLCATGAGARADPTRIRVADLRESTNDPLSRAVMHR 238 (448)
Q Consensus 160 ~~~~~~~~~~~ll~~~~D~VIda~Dn-~~~r~~l~~~c~~~~ip~I~~~g~G~k~dpt~i~i~di~~~~~dpl~~~~r~~ 238 (448)
..++. ++++..++|++|.|.-. .-+. +-+.+.+.++|..+. +.|+.....+.
T Consensus 95 -~~~~~---~~i~~~~~Dvlip~a~~~~i~~----~~~~~l~a~~I~egA-------------------N~~~t~~a~~~ 147 (227)
T cd01076 95 -ERITN---EELLELDCDILIPAALENQITA----DNADRIKAKIIVEAA-------------------NGPTTPEADEI 147 (227)
T ss_pred -eecCC---ccceeecccEEEecCccCccCH----HHHhhceeeEEEeCC-------------------CCCCCHHHHHH
Confidence 11122 23444469999998742 1111 233344566676543 45666566677
Q ss_pred Hhh
Q 013180 239 LRK 241 (448)
Q Consensus 239 l~~ 241 (448)
|++
T Consensus 148 L~~ 150 (227)
T cd01076 148 LHE 150 (227)
T ss_pred HHH
Confidence 776
No 82
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=96.32 E-value=0.033 Score=53.57 Aligned_cols=107 Identities=21% Similarity=0.172 Sum_probs=64.3
Q ss_pred HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe
Q 013180 81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV 160 (448)
Q Consensus 81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~ 160 (448)
.|+.++|+|.|+|.||+++|+.|...|...+.+.|.+- .+|.+ |-.-.+. .++..+...-..+. ..
T Consensus 20 ~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g---------~i~~~---Gld~~~l-~~~~~~~~~~~~~~-~~ 85 (217)
T cd05211 20 SLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG---------YIYDP---GITTEEL-INYAVALGGSARVK-VQ 85 (217)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC---------cEECC---CCCHHHH-HHHHHhhCCccccC-cc
Confidence 57889999999999999999999999999999999763 34443 4432222 22222221111110 00
Q ss_pred ccCCccchHHHhcCCCCeEEEccCCHHHHHHHH-HHHHHcCCcEEEEcC
Q 013180 161 LLYDASSEEEILSGHPDFVLDCIDNIDTKVALL-AACVRRGLKVLCATG 208 (448)
Q Consensus 161 ~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~-~~c~~~~ip~I~~~g 208 (448)
+.++. ++++.-++|++|-|.-.- .++ +-+.+.+.++|..+.
T Consensus 86 ~~~~~---~~l~~~~~DVlipaA~~~----~i~~~~a~~l~a~~V~e~A 127 (217)
T cd05211 86 DYFPG---EAILGLDVDIFAPCALGN----VIDLENAKKLKAKVVAEGA 127 (217)
T ss_pred cccCc---ccceeccccEEeeccccC----ccChhhHhhcCccEEEeCC
Confidence 11222 234444699999887432 122 345556677887654
No 83
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=96.30 E-value=0.068 Score=57.77 Aligned_cols=122 Identities=20% Similarity=0.308 Sum_probs=84.7
Q ss_pred HHHHHhhCCcEEEEcCC-hHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCce
Q 013180 77 ESQQKVSGSYVVVIGLG-GVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECH 155 (448)
Q Consensus 77 ~~q~kL~~~~VlVVG~G-GvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~ 155 (448)
.-++-+.+++|+|-|+| ++||++++.+++.+.++|.++|.| ++|-..+...+++..|..+
T Consensus 243 ~i~~~~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~-------------------E~~~~~i~~el~~~~~~~~ 303 (588)
T COG1086 243 LIGAMLTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRD-------------------EYKLYLIDMELREKFPELK 303 (588)
T ss_pred HHHhHcCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCc-------------------hHHHHHHHHHHHhhCCCcc
Confidence 34567899999999875 689999999999999999997766 4455667778888888777
Q ss_pred EEEEeccC-CccchHHHhcC-CCCeEEEccC---------CHHH--------HHHHHHHHHHcCCcEEEEcCCCCccCCC
Q 013180 156 IDAKVLLY-DASSEEEILSG-HPDFVLDCID---------NIDT--------KVALLAACVRRGLKVLCATGAGARADPT 216 (448)
Q Consensus 156 v~~~~~~~-~~~~~~~ll~~-~~D~VIda~D---------n~~~--------r~~l~~~c~~~~ip~I~~~g~G~k~dpt 216 (448)
+..+-..+ +.+.....+.+ ++|+|+-|.. |+.. -..+.++|.++++.-+-.-....-.+|+
T Consensus 304 ~~~~igdVrD~~~~~~~~~~~kvd~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~V~iSTDKAV~Pt 383 (588)
T COG1086 304 LRFYIGDVRDRDRVERAMEGHKVDIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLISTDKAVNPT 383 (588)
T ss_pred eEEEecccccHHHHHHHHhcCCCceEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCCEEEEEecCcccCCc
Confidence 77665544 33444444442 5899886654 3332 2356688888888755544333344555
Q ss_pred c
Q 013180 217 R 217 (448)
Q Consensus 217 ~ 217 (448)
.
T Consensus 384 N 384 (588)
T COG1086 384 N 384 (588)
T ss_pred h
Confidence 3
No 84
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=96.30 E-value=0.033 Score=64.74 Aligned_cols=113 Identities=16% Similarity=0.117 Sum_probs=62.2
Q ss_pred hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180 82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL 161 (448)
Q Consensus 82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~ 161 (448)
-+.++|+|+|+|.+|+.++.+|++.+--+ .+..|.-+...+ +..-.|.-..+++.+++. .|.++....+
T Consensus 567 ~~~~rIlVLGAG~VG~~~a~~La~~~~~~--~~~~~~~~~~~~----lV~VaD~~~~~a~~la~~----~~~~~~v~lD- 635 (1042)
T PLN02819 567 KKSQNVLILGAGRVCRPAAEYLASVKTIS--YYGDDSEEPTDV----HVIVASLYLKDAKETVEG----IENAEAVQLD- 635 (1042)
T ss_pred ccCCcEEEECCCHHHHHHHHHHHhCcCcc--cccccccccccc----EEEEECCCHHHHHHHHHh----cCCCceEEee-
Confidence 35779999999999999999999864211 000000000000 011123333344444333 2333222211
Q ss_pred cCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEc
Q 013180 162 LYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCAT 207 (448)
Q Consensus 162 ~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~ 207 (448)
.-+.+....++.+ +|+||.|+.. .....+...|.++|+.++...
T Consensus 636 v~D~e~L~~~v~~-~DaVIsalP~-~~H~~VAkaAieaGkHvv~ek 679 (1042)
T PLN02819 636 VSDSESLLKYVSQ-VDVVISLLPA-SCHAVVAKACIELKKHLVTAS 679 (1042)
T ss_pred cCCHHHHHHhhcC-CCEEEECCCc-hhhHHHHHHHHHcCCCEEECc
Confidence 1133344444455 9999999887 345677788888888887754
No 85
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=96.18 E-value=0.013 Score=54.23 Aligned_cols=35 Identities=31% Similarity=0.479 Sum_probs=31.2
Q ss_pred HhhCCcEEEEcCCh-HHHHHHHHHHHcCCceEEEEeC
Q 013180 81 KVSGSYVVVIGLGG-VGSHAAAMLLRSGVGRLLLVDF 116 (448)
Q Consensus 81 kL~~~~VlVVG~GG-vGs~va~~LarsGVg~i~LiD~ 116 (448)
.|.+++|+|||+|. +|..++++|...|+ ++++++.
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r 76 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHS 76 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEEC
Confidence 58999999999998 59999999999998 6888773
No 86
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=96.09 E-value=0.035 Score=51.92 Aligned_cols=84 Identities=27% Similarity=0.348 Sum_probs=54.9
Q ss_pred HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEE
Q 013180 81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK 159 (448)
Q Consensus 81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~ 159 (448)
.+++++|+|+|. |++|..++..|+..| .++++++.+ ..|++.+.+.+.+.. ..++...
T Consensus 25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g-~~V~l~~R~-------------------~~~~~~l~~~l~~~~-~~~~~~~ 83 (194)
T cd01078 25 DLKGKTAVVLGGTGPVGQRAAVLLAREG-ARVVLVGRD-------------------LERAQKAADSLRARF-GEGVGAV 83 (194)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEcCC-------------------HHHHHHHHHHHHhhc-CCcEEEe
Confidence 467899999996 999999999999998 488886543 235555556554332 2333332
Q ss_pred eccCCccchHHHhcCCCCeEEEccCCHH
Q 013180 160 VLLYDASSEEEILSGHPDFVLDCIDNID 187 (448)
Q Consensus 160 ~~~~~~~~~~~ll~~~~D~VIda~Dn~~ 187 (448)
. ..+.++..+.+.+ +|+||.|+....
T Consensus 84 ~-~~~~~~~~~~~~~-~diVi~at~~g~ 109 (194)
T cd01078 84 E-TSDDAARAAAIKG-ADVVFAAGAAGV 109 (194)
T ss_pred e-CCCHHHHHHHHhc-CCEEEECCCCCc
Confidence 1 1233334455654 899998876533
No 87
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=96.03 E-value=0.035 Score=58.58 Aligned_cols=36 Identities=33% Similarity=0.529 Sum_probs=32.9
Q ss_pred hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
+.+++|+|+|+|++|..++.+|...|+.+++++|.+
T Consensus 180 ~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~ 215 (423)
T PRK00045 180 LSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRT 215 (423)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCC
Confidence 678999999999999999999999999999997554
No 88
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=96.02 E-value=0.049 Score=54.35 Aligned_cols=107 Identities=18% Similarity=0.242 Sum_probs=75.2
Q ss_pred HHhhCCcEEEEcCChHHHHHHHHHHHc----CC------ceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhh
Q 013180 80 QKVSGSYVVVIGLGGVGSHAAAMLLRS----GV------GRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSS 149 (448)
Q Consensus 80 ~kL~~~~VlVVG~GGvGs~va~~Lars----GV------g~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~ 149 (448)
++|++.||+++|+|+.|..++++|..+ |+ ++|.++|.+-+=..+ | .|+-..|...+++
T Consensus 21 ~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~--r------~~l~~~~~~~a~~---- 88 (279)
T cd05312 21 KPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKD--R------KDLTPFKKPFARK---- 88 (279)
T ss_pred CChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCC--C------CcchHHHHHHHhh----
Confidence 578899999999999999999999988 99 799999987542221 1 2233344443332
Q ss_pred hCCCceEEEEeccCCccchHHHhcC-CCCeEEEccC--CHHHHHHHHHHHHHcCCcEEEEcC
Q 013180 150 IFPECHIDAKVLLYDASSEEEILSG-HPDFVLDCID--NIDTKVALLAACVRRGLKVLCATG 208 (448)
Q Consensus 150 inP~v~v~~~~~~~~~~~~~~ll~~-~~D~VIda~D--n~~~r~~l~~~c~~~~ip~I~~~g 208 (448)
.++ ....++.+.+.. ++|++|.++. ..-++..|-.++.....|+|.+..
T Consensus 89 ~~~----------~~~~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLS 140 (279)
T cd05312 89 DEE----------KEGKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALS 140 (279)
T ss_pred cCc----------ccCCCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECC
Confidence 232 011345666651 3999999885 455677788888888999999874
No 89
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=95.95 E-value=0.0092 Score=57.73 Aligned_cols=38 Identities=29% Similarity=0.487 Sum_probs=35.4
Q ss_pred HhhCCcEEEEcCChHHHHHHHHHHHcCCc--eEEEEeCCc
Q 013180 81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVG--RLLLVDFDQ 118 (448)
Q Consensus 81 kL~~~~VlVVG~GGvGs~va~~LarsGVg--~i~LiD~D~ 118 (448)
.+++.+|+|+|+||.|..++..|+..|+. +|.|+|.+-
T Consensus 22 ~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 22 KIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 57889999999999999999999999999 999998873
No 90
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=95.92 E-value=0.085 Score=51.94 Aligned_cols=108 Identities=19% Similarity=0.221 Sum_probs=72.5
Q ss_pred HHhhCCcEEEEcCChHHHHHHHHHHHcCCc----------eEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhh
Q 013180 80 QKVSGSYVVVIGLGGVGSHAAAMLLRSGVG----------RLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSS 149 (448)
Q Consensus 80 ~kL~~~~VlVVG~GGvGs~va~~LarsGVg----------~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~ 149 (448)
++|++.||+++|+|..|..++..|...|+. +|.++|.+-+=..+- .|.-..|...+ +.
T Consensus 21 ~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r--------~~l~~~~~~~~-~~--- 88 (254)
T cd00762 21 KKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNR--------KETCPNEYHLA-RF--- 88 (254)
T ss_pred CChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCC--------CccCHHHHHHH-HH---
Confidence 578899999999999999999999999997 999999875422211 12222232221 11
Q ss_pred hCCCceEEEEeccCCccchHHHhcC-CCCeEEEccC--CHHHHHHHHHHHHHcCCcEEEEcC
Q 013180 150 IFPECHIDAKVLLYDASSEEEILSG-HPDFVLDCID--NIDTKVALLAACVRRGLKVLCATG 208 (448)
Q Consensus 150 inP~v~v~~~~~~~~~~~~~~ll~~-~~D~VIda~D--n~~~r~~l~~~c~~~~ip~I~~~g 208 (448)
.++.- ...++.+.+.. ++|++|.++. +.-++..+-.++.....|+|.+..
T Consensus 89 ~~~~~---------~~~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLS 141 (254)
T cd00762 89 ANPER---------ESGDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFALS 141 (254)
T ss_pred cCccc---------ccCCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEECC
Confidence 12110 11345555551 3999998775 344567777888888899999874
No 91
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=95.82 E-value=0.024 Score=57.19 Aligned_cols=33 Identities=42% Similarity=0.691 Sum_probs=30.1
Q ss_pred CcEEEEcCChHHHHHHHHHHHcCCc-eEEEEeCC
Q 013180 85 SYVVVIGLGGVGSHAAAMLLRSGVG-RLLLVDFD 117 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGVg-~i~LiD~D 117 (448)
++|.|+|+|++|+.+|..|+..|+. +|.|+|.+
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~ 34 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDIN 34 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 3799999999999999999999985 89998875
No 92
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=95.79 E-value=0.013 Score=53.55 Aligned_cols=113 Identities=20% Similarity=0.237 Sum_probs=64.3
Q ss_pred CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccCC
Q 013180 85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYD 164 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~~ 164 (448)
++|.+||+|-.|+.+|.+|+++|.. +.+.|.+.= .+.+. .+.|-..++..++.+.+. ++-+.... +
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~-v~~~d~~~~---~~~~~-----~~~g~~~~~s~~e~~~~~--dvvi~~v~---~ 67 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYE-VTVYDRSPE---KAEAL-----AEAGAEVADSPAEAAEQA--DVVILCVP---D 67 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTE-EEEEESSHH---HHHHH-----HHTTEEEESSHHHHHHHB--SEEEE-SS---S
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCe-EEeeccchh---hhhhh-----HHhhhhhhhhhhhHhhcc--cceEeecc---c
Confidence 4799999999999999999999965 788774421 11111 011222222222332222 22222221 1
Q ss_pred ccchHHH------hc--CCCCeEEEccC-CHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 013180 165 ASSEEEI------LS--GHPDFVLDCID-NIDTKVALLAACVRRGLKVLCATGAGA 211 (448)
Q Consensus 165 ~~~~~~l------l~--~~~D~VIda~D-n~~~r~~l~~~c~~~~ip~I~~~g~G~ 211 (448)
.+...+. +. .+-++|||++. +++....+.+.+..+|+.+|++.-.|+
T Consensus 68 ~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV~Gg 123 (163)
T PF03446_consen 68 DDAVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAPVSGG 123 (163)
T ss_dssp HHHHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEEESH
T ss_pred chhhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceeeeeeeecc
Confidence 1222222 21 13578888876 677888999999999999999876664
No 93
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=95.76 E-value=0.047 Score=49.56 Aligned_cols=99 Identities=20% Similarity=0.298 Sum_probs=60.4
Q ss_pred cEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHh--hhCCCceEEEEeccC
Q 013180 86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFS--SIFPECHIDAKVLLY 163 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~--~inP~v~v~~~~~~~ 163 (448)
+|.|+|+|..|+.+|..|+..| .+++|.+.|.= .++.+.+.=. ...|.+++.... .+
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g-~~V~l~~~~~~-------------------~~~~i~~~~~n~~~~~~~~l~~~i-~~ 59 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNG-HEVTLWGRDEE-------------------QIEEINETRQNPKYLPGIKLPENI-KA 59 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCT-EEEEEETSCHH-------------------HHHHHHHHTSETTTSTTSBEETTE-EE
T ss_pred CEEEECcCHHHHHHHHHHHHcC-CEEEEEeccHH-------------------HHHHHHHhCCCCCCCCCcccCccc-cc
Confidence 6899999999999999999999 77888776641 1222221100 112333322110 11
Q ss_pred CccchHHHhcCCCCeEEEccCCHHHHHHHHHHHH--HcCCcEEEEc
Q 013180 164 DASSEEEILSGHPDFVLDCIDNIDTKVALLAACV--RRGLKVLCAT 207 (448)
Q Consensus 164 ~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~--~~~ip~I~~~ 207 (448)
+ .+.++.+.+ .|+||-|+.+...+..+.+... +.+.++|+..
T Consensus 60 t-~dl~~a~~~-ad~IiiavPs~~~~~~~~~l~~~l~~~~~ii~~~ 103 (157)
T PF01210_consen 60 T-TDLEEALED-ADIIIIAVPSQAHREVLEQLAPYLKKGQIIISAT 103 (157)
T ss_dssp E-SSHHHHHTT--SEEEE-S-GGGHHHHHHHHTTTSHTT-EEEETS
T ss_pred c-cCHHHHhCc-ccEEEecccHHHHHHHHHHHhhccCCCCEEEEec
Confidence 2 345566665 9999999999888877666554 5777888743
No 94
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=95.72 E-value=0.06 Score=53.05 Aligned_cols=108 Identities=22% Similarity=0.282 Sum_probs=69.4
Q ss_pred HHhhCCcEEEEcCChHHHHHHHHHHHc----CC------ceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhh
Q 013180 80 QKVSGSYVVVIGLGGVGSHAAAMLLRS----GV------GRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSS 149 (448)
Q Consensus 80 ~kL~~~~VlVVG~GGvGs~va~~Lars----GV------g~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~ 149 (448)
++|++.||+++|+|..|..++.+|+.+ |+ ++|.++|.+-+=..+ +.|+- +.-+...+.
T Consensus 21 ~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~--------r~~l~----~~~~~~a~~ 88 (255)
T PF03949_consen 21 KKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDD--------REDLN----PHKKPFARK 88 (255)
T ss_dssp S-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTT--------TSSHS----HHHHHHHBS
T ss_pred CCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEecc--------CccCC----hhhhhhhcc
Confidence 358999999999999999999999999 99 899999987432211 11221 222233344
Q ss_pred hCCCceEEEEeccCCccchHHHhcC-CCCeEEEccC--CHHHHHHHHHHHHHcCCcEEEEcC
Q 013180 150 IFPECHIDAKVLLYDASSEEEILSG-HPDFVLDCID--NIDTKVALLAACVRRGLKVLCATG 208 (448)
Q Consensus 150 inP~v~v~~~~~~~~~~~~~~ll~~-~~D~VIda~D--n~~~r~~l~~~c~~~~ip~I~~~g 208 (448)
.+|.... .++.+.+.+ ++|++|.++. ..-++..+-.++..+..|+|.+..
T Consensus 89 ~~~~~~~---------~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPIIF~LS 141 (255)
T PF03949_consen 89 TNPEKDW---------GSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNERPIIFPLS 141 (255)
T ss_dssp SSTTT-----------SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSSSEEEEE-S
T ss_pred Ccccccc---------cCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCCCCEEEECC
Confidence 4443222 245555543 4799999874 334566777888888999999874
No 95
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=95.67 E-value=0.02 Score=51.09 Aligned_cols=36 Identities=25% Similarity=0.521 Sum_probs=32.2
Q ss_pred hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
+++++|+|+|+|++|..++..|...|..+++++|.+
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~ 52 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRT 52 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 567899999999999999999999987789998765
No 96
>PRK09242 tropinone reductase; Provisional
Probab=95.62 E-value=0.31 Score=46.85 Aligned_cols=84 Identities=18% Similarity=0.298 Sum_probs=56.1
Q ss_pred HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEE
Q 013180 81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK 159 (448)
Q Consensus 81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~ 159 (448)
++++++++|+|+ ||+|..+++.|+..|. ++.+++.+ ..+.+.+.+.+...+|..++..+
T Consensus 6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~-------------------~~~~~~~~~~l~~~~~~~~~~~~ 65 (257)
T PRK09242 6 RLDGQTALITGASKGIGLAIAREFLGLGA-DVLIVARD-------------------ADALAQARDELAEEFPEREVHGL 65 (257)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCC-------------------HHHHHHHHHHHHhhCCCCeEEEE
Confidence 467889999986 7999999999999997 57776643 12344455666666676777666
Q ss_pred eccCCc-cchHHHhc------CCCCeEEEccC
Q 013180 160 VLLYDA-SSEEEILS------GHPDFVLDCID 184 (448)
Q Consensus 160 ~~~~~~-~~~~~ll~------~~~D~VIda~D 184 (448)
...+.. +....++. ++.|+||.+..
T Consensus 66 ~~Dl~~~~~~~~~~~~~~~~~g~id~li~~ag 97 (257)
T PRK09242 66 AADVSDDEDRRAILDWVEDHWDGLHILVNNAG 97 (257)
T ss_pred ECCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 554433 22222221 35898887774
No 97
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=95.57 E-value=0.18 Score=45.85 Aligned_cols=98 Identities=31% Similarity=0.407 Sum_probs=63.6
Q ss_pred EEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc-CC
Q 013180 87 VVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL-YD 164 (448)
Q Consensus 87 VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~-~~ 164 (448)
|+|+|+ |.+|..+++.|.+.| -+++. +.|.. .|.+. .+.+++. ... .+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~-~~V~~----------~~R~~---------~~~~~--------~~~~~~~--~~d~~d 50 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG-HEVTA----------LVRSP---------SKAED--------SPGVEII--QGDLFD 50 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-SEEEE----------EESSG---------GGHHH--------CTTEEEE--ESCTTC
T ss_pred eEEECCCChHHHHHHHHHHHCC-CEEEE----------EecCc---------hhccc--------ccccccc--eeeehh
Confidence 789997 999999999999999 56666 33332 12222 5555543 333 34
Q ss_pred ccchHHHhcCCCCeEEEccCC----HHHHHHHHHHHHHcCCcEE-EEcCCCCccCC
Q 013180 165 ASSEEEILSGHPDFVLDCIDN----IDTKVALLAACVRRGLKVL-CATGAGARADP 215 (448)
Q Consensus 165 ~~~~~~ll~~~~D~VIda~Dn----~~~r~~l~~~c~~~~ip~I-~~~g~G~k~dp 215 (448)
.+...+.+.+ +|.||.|... ...-..+.++|.+.+++-+ ..++.|...++
T Consensus 51 ~~~~~~al~~-~d~vi~~~~~~~~~~~~~~~~~~a~~~~~~~~~v~~s~~~~~~~~ 105 (183)
T PF13460_consen 51 PDSVKAALKG-ADAVIHAAGPPPKDVDAAKNIIEAAKKAGVKRVVYLSSAGVYRDP 105 (183)
T ss_dssp HHHHHHHHTT-SSEEEECCHSTTTHHHHHHHHHHHHHHTTSSEEEEEEETTGTTTC
T ss_pred hhhhhhhhhh-cchhhhhhhhhcccccccccccccccccccccceeeeccccCCCC
Confidence 5556677775 9999999863 3334577788888888643 33334433333
No 98
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=95.52 E-value=0.13 Score=50.75 Aligned_cols=87 Identities=16% Similarity=0.200 Sum_probs=58.6
Q ss_pred CcEEEEcC-ChHHHHHHHHHHHc-CCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180 85 SYVVVIGL-GGVGSHAAAMLLRS-GVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL 162 (448)
Q Consensus 85 ~~VlVVG~-GGvGs~va~~Lars-GVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~ 162 (448)
.+|+|+|| |.+|..++..+... ++.-..++|.+.- ..... ....+.
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~---~~~~~------------------------~~~~i~----- 49 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGS---PLVGQ------------------------GALGVA----- 49 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCc---ccccc------------------------CCCCcc-----
Confidence 47999999 99999999988764 5555556666521 11100 001111
Q ss_pred CCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEE
Q 013180 163 YDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCA 206 (448)
Q Consensus 163 ~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~ 206 (448)
..++.++++. .+|+|||++ ++..-..+...|.++|+|++.+
T Consensus 50 -~~~dl~~ll~-~~DvVid~t-~p~~~~~~~~~al~~G~~vvig 90 (257)
T PRK00048 50 -ITDDLEAVLA-DADVLIDFT-TPEATLENLEFALEHGKPLVIG 90 (257)
T ss_pred -ccCCHHHhcc-CCCEEEECC-CHHHHHHHHHHHHHcCCCEEEE
Confidence 1134556665 499999999 5555588889999999999976
No 99
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=95.43 E-value=0.055 Score=48.42 Aligned_cols=76 Identities=26% Similarity=0.312 Sum_probs=50.6
Q ss_pred cEEEEcC-ChHHHHHHHHHHHcCCc-eEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccC
Q 013180 86 YVVVIGL-GGVGSHAAAMLLRSGVG-RLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY 163 (448)
Q Consensus 86 ~VlVVG~-GGvGs~va~~LarsGVg-~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~ 163 (448)
||.|||+ |.||+.+|..|+..|+. +|.|+|.+ ..|++..+.-+....+..........-
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~-------------------~~~~~g~a~Dl~~~~~~~~~~~~i~~~ 62 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDIN-------------------EDKAEGEALDLSHASAPLPSPVRITSG 62 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESS-------------------HHHHHHHHHHHHHHHHGSTEEEEEEES
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccC-------------------cccceeeehhhhhhhhhcccccccccc
Confidence 7999999 99999999999999985 49997755 225565556666654444333222211
Q ss_pred CccchHHHhcCCCCeEEEccCC
Q 013180 164 DASSEEEILSGHPDFVLDCIDN 185 (448)
Q Consensus 164 ~~~~~~~ll~~~~D~VIda~Dn 185 (448)
+ .+-+.+ .|+||-+...
T Consensus 63 ~----~~~~~~-aDivvitag~ 79 (141)
T PF00056_consen 63 D----YEALKD-ADIVVITAGV 79 (141)
T ss_dssp S----GGGGTT-ESEEEETTST
T ss_pred c----cccccc-ccEEEEeccc
Confidence 1 122343 9999977654
No 100
>PRK06392 homoserine dehydrogenase; Provisional
Probab=95.40 E-value=0.12 Score=52.72 Aligned_cols=104 Identities=18% Similarity=0.302 Sum_probs=57.6
Q ss_pred cEEEEcCChHHHHHHHHHHHc------C--CceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEE
Q 013180 86 YVVVIGLGGVGSHAAAMLLRS------G--VGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHID 157 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~Lars------G--Vg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~ 157 (448)
+|.|+|+|.||+.+++.|..- | +.-+.+.|.. ..++....+.-.+....++. ..+.
T Consensus 2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~---------g~l~~~~Gldl~~l~~~~~~-g~l~------ 65 (326)
T PRK06392 2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSK---------LSYYNERGLDIGKIISYKEK-GRLE------ 65 (326)
T ss_pred EEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECC---------CcccCCcCCChHHHHHHHhc-Cccc------
Confidence 799999999999999999872 3 3334444533 12233333332222111111 1111
Q ss_pred EEeccCCccchHHHhcCCCCeEEEccCCHHH---HHHHHHHHHHcCCcEEEEc
Q 013180 158 AKVLLYDASSEEEILSGHPDFVLDCIDNIDT---KVALLAACVRRGLKVLCAT 207 (448)
Q Consensus 158 ~~~~~~~~~~~~~ll~~~~D~VIda~Dn~~~---r~~l~~~c~~~~ip~I~~~ 207 (448)
.+. .+..+.++++..++|+||+|+.+..+ -..+...+.++|+.+|.+.
T Consensus 66 ~~~--~~~~~~~~ll~~~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVTaN 116 (326)
T PRK06392 66 EID--YEKIKFDEIFEIKPDVIVDVTPASKDGIREKNLYINAFEHGIDVVTAN 116 (326)
T ss_pred cCC--CCcCCHHHHhcCCCCEEEECCCCCCcCchHHHHHHHHHHCCCEEEcCC
Confidence 110 11113445554469999999963221 3445577788999999864
No 101
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=95.38 E-value=0.06 Score=53.91 Aligned_cols=88 Identities=15% Similarity=0.123 Sum_probs=57.2
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180 83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL 162 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~ 162 (448)
+..+|+|+|+|++|..++..+...|+..+.++|.+. .| .+.+.. ..-+|+.
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~------~r-------------l~~a~~-~~~i~~~--------- 194 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNP------RR-------------RDGATG-YEVLDPE--------- 194 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCH------HH-------------HHhhhh-ccccChh---------
Confidence 567899999999999999988889998888776431 11 111110 0011210
Q ss_pred CCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEE
Q 013180 163 YDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCA 206 (448)
Q Consensus 163 ~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~ 206 (448)
.+ ....+|+||||+.+..+.....+..+..|.-++.+
T Consensus 195 --~~-----~~~g~Dvvid~~G~~~~~~~~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 195 --KD-----PRRDYRAIYDASGDPSLIDTLVRRLAKGGEIVLAG 231 (308)
T ss_pred --hc-----cCCCCCEEEECCCCHHHHHHHHHhhhcCcEEEEEe
Confidence 00 12249999999999776666677777777755443
No 102
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=95.37 E-value=0.091 Score=52.80 Aligned_cols=100 Identities=24% Similarity=0.363 Sum_probs=54.2
Q ss_pred EEEE-cCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCC--ceEE--EEec
Q 013180 87 VVVI-GLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPE--CHID--AKVL 161 (448)
Q Consensus 87 VlVV-G~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~--v~v~--~~~~ 161 (448)
|+|- |+|++||++++.|++.+..+|.++|.|--.+.+ +.+.+++..|+ ++.. .+..
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~-------------------l~~~l~~~~~~~~v~~~~~~vig 61 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYE-------------------LERELRSRFPDPKVRFEIVPVIG 61 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHH-------------------HHHHCHHHC--TTCEEEEE--CT
T ss_pred CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHH-------------------HHHHHhhcccccCcccccCceee
Confidence 5677 457899999999999999999999887544444 44444444433 3222 2222
Q ss_pred cCC-ccchHHHhc-CCCCeEEEccC---------CHH--------HHHHHHHHHHHcCCcEEE
Q 013180 162 LYD-ASSEEEILS-GHPDFVLDCID---------NID--------TKVALLAACVRRGLKVLC 205 (448)
Q Consensus 162 ~~~-~~~~~~ll~-~~~D~VIda~D---------n~~--------~r~~l~~~c~~~~ip~I~ 205 (448)
.+. .+....++. .++|+|+-+.. |+. .-..+.++|.++++.-+-
T Consensus 62 Dvrd~~~l~~~~~~~~pdiVfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~~v~~~v 124 (293)
T PF02719_consen 62 DVRDKERLNRIFEEYKPDIVFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEHGVERFV 124 (293)
T ss_dssp SCCHHHHHHHHTT--T-SEEEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHTT-SEEE
T ss_pred cccCHHHHHHHHhhcCCCEEEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 332 223344443 14888887665 221 123567888888876433
No 103
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=95.36 E-value=0.028 Score=45.71 Aligned_cols=37 Identities=35% Similarity=0.558 Sum_probs=34.0
Q ss_pred HHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeC
Q 013180 80 QKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDF 116 (448)
Q Consensus 80 ~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~ 116 (448)
..+..++++|+|+|++|..++.+|...|..++.++|.
T Consensus 19 ~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 19 KSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 3478899999999999999999999998889999888
No 104
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=95.34 E-value=0.049 Score=57.59 Aligned_cols=37 Identities=35% Similarity=0.576 Sum_probs=33.3
Q ss_pred HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180 81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ 118 (448)
Q Consensus 81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~ 118 (448)
.+.+++|+|+|+|.+|..+|..|...|+ +++++|.|.
T Consensus 209 ~l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp 245 (425)
T PRK05476 209 LIAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDP 245 (425)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCc
Confidence 3589999999999999999999999998 699988764
No 105
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=95.32 E-value=0.19 Score=49.57 Aligned_cols=38 Identities=32% Similarity=0.405 Sum_probs=33.6
Q ss_pred HHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 80 QKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 80 ~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
..|++++|+|.|.|.||+++|+.|...|..-+.+.|.+
T Consensus 34 ~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~ 71 (254)
T cd05313 34 ETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSK 71 (254)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence 45789999999999999999999999998777787844
No 106
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=95.31 E-value=0.045 Score=44.86 Aligned_cols=90 Identities=26% Similarity=0.328 Sum_probs=56.0
Q ss_pred cEEEEcCChHHHHHHHHHHHcCC--ceEEEE-eCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180 86 YVVVIGLGGVGSHAAAMLLRSGV--GRLLLV-DFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL 162 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~LarsGV--g~i~Li-D~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~ 162 (448)
||.|||+|.+|+.++..|+++|+ .++.++ +.+ ..|++.+++++ + +.+.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~-------------------~~~~~~~~~~~----~-~~~~----- 51 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRS-------------------PEKAAELAKEY----G-VQAT----- 51 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESS-------------------HHHHHHHHHHC----T-TEEE-----
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCc-------------------HHHHHHHHHhh----c-cccc-----
Confidence 68999999999999999999994 344432 211 22333333332 2 1221
Q ss_pred CCccchHHHhcCCCCeEEEccCCHHHHHHHHHH-HHHcCCcEEEEc
Q 013180 163 YDASSEEEILSGHPDFVLDCIDNIDTKVALLAA-CVRRGLKVLCAT 207 (448)
Q Consensus 163 ~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~-c~~~~ip~I~~~ 207 (448)
..+..+.+.. .|+||-|+........+.+. ....+.-+|+.+
T Consensus 52 --~~~~~~~~~~-advvilav~p~~~~~v~~~i~~~~~~~~vis~~ 94 (96)
T PF03807_consen 52 --ADDNEEAAQE-ADVVILAVKPQQLPEVLSEIPHLLKGKLVISIA 94 (96)
T ss_dssp --SEEHHHHHHH-TSEEEE-S-GGGHHHHHHHHHHHHTTSEEEEES
T ss_pred --cCChHHhhcc-CCEEEEEECHHHHHHHHHHHhhccCCCEEEEeC
Confidence 1123455553 99999999998888777666 455677777754
No 107
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=95.29 E-value=0.036 Score=55.20 Aligned_cols=34 Identities=26% Similarity=0.298 Sum_probs=31.4
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
+++|+|+|+||.+..++..|+..|+.+|+|++.+
T Consensus 122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~ 155 (272)
T PRK12550 122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARN 155 (272)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 3589999999999999999999999999998765
No 108
>PLN00203 glutamyl-tRNA reductase
Probab=95.24 E-value=0.065 Score=58.08 Aligned_cols=78 Identities=21% Similarity=0.337 Sum_probs=53.1
Q ss_pred hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180 82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL 161 (448)
Q Consensus 82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~ 161 (448)
|.+++|+|||+|.+|..++++|...|+.+|++++.+ ..|++.+++.+ +.+.+...
T Consensus 264 l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs-------------------~era~~La~~~----~g~~i~~~-- 318 (519)
T PLN00203 264 HASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRS-------------------EERVAALREEF----PDVEIIYK-- 318 (519)
T ss_pred CCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCC-------------------HHHHHHHHHHh----CCCceEee--
Confidence 668999999999999999999999999999995433 12444444443 22323221
Q ss_pred cCCccchHHHhcCCCCeEEEccCCHH
Q 013180 162 LYDASSEEEILSGHPDFVLDCIDNID 187 (448)
Q Consensus 162 ~~~~~~~~~ll~~~~D~VIda~Dn~~ 187 (448)
..++..+.+.+ +|+||.||....
T Consensus 319 --~~~dl~~al~~-aDVVIsAT~s~~ 341 (519)
T PLN00203 319 --PLDEMLACAAE-ADVVFTSTSSET 341 (519)
T ss_pred --cHhhHHHHHhc-CCEEEEccCCCC
Confidence 11233455554 999999986544
No 109
>PRK06197 short chain dehydrogenase; Provisional
Probab=95.23 E-value=0.084 Score=52.57 Aligned_cols=43 Identities=28% Similarity=0.387 Sum_probs=33.8
Q ss_pred cCHHHHHHhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 74 FGVESQQKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 74 ~G~~~q~kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
|+...+..++++.|+|.|+ ||+|.++++.|++.|. ++.+++.+
T Consensus 6 ~~~~~~~~~~~k~vlItGas~gIG~~~a~~l~~~G~-~vi~~~r~ 49 (306)
T PRK06197 6 WTAADIPDQSGRVAVVTGANTGLGYETAAALAAKGA-HVVLAVRN 49 (306)
T ss_pred CCccccccCCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCC
Confidence 4444456678899999986 8999999999999997 57776543
No 110
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=95.21 E-value=0.059 Score=54.06 Aligned_cols=36 Identities=28% Similarity=0.455 Sum_probs=32.5
Q ss_pred HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
.|.+++|+|+|+|++|..+|+.|...|. +++++|.+
T Consensus 148 ~l~gk~v~IiG~G~iG~avA~~L~~~G~-~V~v~~R~ 183 (287)
T TIGR02853 148 TIHGSNVMVLGFGRTGMTIARTFSALGA-RVFVGARS 183 (287)
T ss_pred CCCCCEEEEEcChHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 5778999999999999999999999997 89987764
No 111
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=95.19 E-value=0.017 Score=53.91 Aligned_cols=98 Identities=22% Similarity=0.303 Sum_probs=55.4
Q ss_pred cEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccc---cccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180 86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHA---VATRADVGTPKALCLKKHFSSIFPECHIDAKVLL 162 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~---l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~ 162 (448)
+|.|||+|..|+.+|..++++|. +++|+|.+.-........+ +-...+-|....+.....+..+. ..
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~------~~--- 70 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY-EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS------FT--- 70 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS-EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE------EE---
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC-cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc------cc---
Confidence 68999999999999999999995 5999998654433222111 00111223333333334443332 11
Q ss_pred CCccchHHHhcCCCCeEEEccC-CHHHHHHHHHHHHH
Q 013180 163 YDASSEEEILSGHPDFVLDCID-NIDTKVALLAACVR 198 (448)
Q Consensus 163 ~~~~~~~~ll~~~~D~VIda~D-n~~~r~~l~~~c~~ 198 (448)
.+.+++. + +|+||.|+. +.+.|..+.+...+
T Consensus 71 ---~dl~~~~-~-adlViEai~E~l~~K~~~~~~l~~ 102 (180)
T PF02737_consen 71 ---TDLEEAV-D-ADLVIEAIPEDLELKQELFAELDE 102 (180)
T ss_dssp ---SSGGGGC-T-ESEEEE-S-SSHHHHHHHHHHHHC
T ss_pred ---cCHHHHh-h-hheehhhccccHHHHHHHHHHHHH
Confidence 1234444 3 999999984 77888766654443
No 112
>PRK08374 homoserine dehydrogenase; Provisional
Probab=95.15 E-value=0.15 Score=52.22 Aligned_cols=109 Identities=20% Similarity=0.232 Sum_probs=60.4
Q ss_pred CcEEEEcCChHHHHHHHHHHH--------cCCc--eEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCc
Q 013180 85 SYVVVIGLGGVGSHAAAMLLR--------SGVG--RLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPEC 154 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~Lar--------sGVg--~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v 154 (448)
-+|.|+|+|.||+.+++.|.. .|+. =+.+.|.+. .++.+..+...+. .+...+-..-.
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~---------~~~~~~Gid~~~l---~~~~~~~~~~~ 70 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSG---------TIWLPEDIDLREA---KEVKENFGKLS 70 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCc---------cccCCCCCChHHH---HHhhhccCchh
Confidence 589999999999999999876 5632 333445331 1222222222222 22222211111
Q ss_pred eEEEEeccCCccchHHHhc-CCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEc
Q 013180 155 HIDAKVLLYDASSEEEILS-GHPDFVLDCIDNIDTKVALLAACVRRGLKVLCAT 207 (448)
Q Consensus 155 ~v~~~~~~~~~~~~~~ll~-~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~ 207 (448)
.+..... ....+.++++. .++|+||||+.. +.-..+...|.+.|+++|.+.
T Consensus 71 ~~~~~~~-~~~~~~~ell~~~~~DVvVd~t~~-~~a~~~~~~al~~G~~VVtan 122 (336)
T PRK08374 71 NWGNDYE-VYNFSPEEIVEEIDADIVVDVTND-KNAHEWHLEALKEGKSVVTSN 122 (336)
T ss_pred hcccccc-ccCCCHHHHHhcCCCCEEEECCCc-HHHHHHHHHHHhhCCcEEECC
Confidence 1100000 00113456663 459999999964 455566677888999999854
No 113
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.12 E-value=0.26 Score=51.92 Aligned_cols=99 Identities=19% Similarity=0.175 Sum_probs=63.7
Q ss_pred hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180 82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL 161 (448)
Q Consensus 82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~ 161 (448)
+...+|+|+|+|.+|..+++.|...|. .++++|.|.= +++. +.+..+.+.+ +..
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~-~v~vid~~~~-------------------~~~~----~~~~~~~~~~--i~g 282 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGY-SVKLIERDPE-------------------RAEE----LAEELPNTLV--LHG 282 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHH-------------------HHHH----HHHHCCCCeE--EEC
Confidence 457899999999999999999999887 5888887621 1111 1111222322 222
Q ss_pred c-CCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEE
Q 013180 162 L-YDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCA 206 (448)
Q Consensus 162 ~-~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~ 206 (448)
. .+.+...+....++|.||.++++......+...|++.+.+.+.+
T Consensus 283 d~~~~~~L~~~~~~~a~~vi~~~~~~~~n~~~~~~~~~~~~~~ii~ 328 (453)
T PRK09496 283 DGTDQELLEEEGIDEADAFIALTNDDEANILSSLLAKRLGAKKVIA 328 (453)
T ss_pred CCCCHHHHHhcCCccCCEEEECCCCcHHHHHHHHHHHHhCCCeEEE
Confidence 2 12222222222359999999988777777777788887765554
No 114
>PRK06270 homoserine dehydrogenase; Provisional
Probab=95.11 E-value=0.15 Score=52.33 Aligned_cols=107 Identities=19% Similarity=0.247 Sum_probs=59.0
Q ss_pred CcEEEEcCChHHHHHHHHHHHc--------CC--ceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCc
Q 013180 85 SYVVVIGLGGVGSHAAAMLLRS--------GV--GRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPEC 154 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~Lars--------GV--g~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v 154 (448)
-+|.|+|+|.+|+.+++.|... |+ .-..++|.+. .++....+-..++...++.. .
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~---------~~~~~~Gi~~~~~~~~~~~~----~-- 67 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSG---------SAIDPDGLDLELALKVKEET----G-- 67 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCC---------cccCcCCCCHHHHHHHHhcc----C--
Confidence 4799999999999999999765 43 3344445321 12222222122222111111 1
Q ss_pred eEEEEeccCCccchHHHhc-CCCCeEEEccCCH----HHHHHHHHHHHHcCCcEEEE
Q 013180 155 HIDAKVLLYDASSEEEILS-GHPDFVLDCIDNI----DTKVALLAACVRRGLKVLCA 206 (448)
Q Consensus 155 ~v~~~~~~~~~~~~~~ll~-~~~D~VIda~Dn~----~~r~~l~~~c~~~~ip~I~~ 206 (448)
.+..+.......+..+++. .++|+||+|+.+. ..-......|.++|+++|.+
T Consensus 68 ~~~~~~~~~~~~d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVta 124 (341)
T PRK06270 68 KLADYPEGGGEISGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTS 124 (341)
T ss_pred CcccCccccccCCHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcC
Confidence 0111111111124455553 3589999999763 23456667888899999985
No 115
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.11 E-value=0.1 Score=55.60 Aligned_cols=35 Identities=46% Similarity=0.507 Sum_probs=31.2
Q ss_pred hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
+++++|+|+|+|++|.++|..|...|. +++++|..
T Consensus 14 ~~~~~v~viG~G~~G~~~A~~L~~~G~-~V~~~d~~ 48 (480)
T PRK01438 14 WQGLRVVVAGLGVSGFAAADALLELGA-RVTVVDDG 48 (480)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 567899999999999999999999997 59998854
No 116
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=95.10 E-value=0.14 Score=50.62 Aligned_cols=35 Identities=23% Similarity=0.432 Sum_probs=30.8
Q ss_pred hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
..+++|+|+|+||+|..++..|+..|. +++++|.+
T Consensus 115 ~~~k~vliiGaGg~g~aia~~L~~~g~-~v~v~~R~ 149 (270)
T TIGR00507 115 RPNQRVLIIGAGGAARAVALPLLKADC-NVIIANRT 149 (270)
T ss_pred ccCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 346789999999999999999999996 89998754
No 117
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.09 E-value=0.051 Score=54.46 Aligned_cols=34 Identities=26% Similarity=0.491 Sum_probs=31.6
Q ss_pred HhhCCcEEEEcCCh-HHHHHHHHHHHcCCceEEEEe
Q 013180 81 KVSGSYVVVIGLGG-VGSHAAAMLLRSGVGRLLLVD 115 (448)
Q Consensus 81 kL~~~~VlVVG~GG-vGs~va~~LarsGVg~i~LiD 115 (448)
.+++++|+|+|+|+ +|..++.+|...|. ++++++
T Consensus 156 ~l~Gk~vvViG~gg~vGkpia~~L~~~ga-tVtv~~ 190 (283)
T PRK14192 156 ELAGKHAVVVGRSAILGKPMAMMLLNANA-TVTICH 190 (283)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCC-EEEEEe
Confidence 47889999999999 99999999999998 899976
No 118
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.06 E-value=0.044 Score=54.79 Aligned_cols=34 Identities=29% Similarity=0.471 Sum_probs=30.1
Q ss_pred CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCcc
Q 013180 85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQV 119 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V 119 (448)
++|.|||+|..|+.+|.+|+++|. .++++|.+.=
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~ 39 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV-DVLVFETTEE 39 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHH
Confidence 489999999999999999999996 5999987643
No 119
>PRK14031 glutamate dehydrogenase; Provisional
Probab=95.03 E-value=0.18 Score=53.63 Aligned_cols=37 Identities=27% Similarity=0.358 Sum_probs=33.6
Q ss_pred HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
.|++++|+|.|.|-||++.|+.|...|..=+.+-|.+
T Consensus 225 ~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~ 261 (444)
T PRK14031 225 DLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSD 261 (444)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence 4889999999999999999999999998888888844
No 120
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.98 E-value=0.14 Score=51.57 Aligned_cols=75 Identities=15% Similarity=0.175 Sum_probs=53.3
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccC
Q 013180 84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY 163 (448)
Q Consensus 84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~ 163 (448)
..+|.|+|+|.+|+.+|..|+..|. +++++|.+.-
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~-~V~~~~r~~~-------------------------------------------- 38 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGH-RVRVWSRRSG-------------------------------------------- 38 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCC-EEEEEeCCCC--------------------------------------------
Confidence 4689999999999999999999995 6888886630
Q ss_pred CccchHHHhcCCCCeEEEccCCHHHHHHHHHHHH---HcCCcEEEE
Q 013180 164 DASSEEEILSGHPDFVLDCIDNIDTKVALLAACV---RRGLKVLCA 206 (448)
Q Consensus 164 ~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~---~~~ip~I~~ 206 (448)
.+..+.+.+ .|+||-|+-+...+..+..... ..+..+|+.
T Consensus 39 --~~~~~~~~~-advvi~~vp~~~~~~v~~~l~~~~~~~~~ivi~~ 81 (308)
T PRK14619 39 --LSLAAVLAD-ADVIVSAVSMKGVRPVAEQVQALNLPPETIIVTA 81 (308)
T ss_pred --CCHHHHHhc-CCEEEEECChHHHHHHHHHHHHhcCCCCcEEEEe
Confidence 122344444 9999999988666655555432 235556664
No 121
>PRK04148 hypothetical protein; Provisional
Probab=94.94 E-value=0.27 Score=43.85 Aligned_cols=96 Identities=17% Similarity=0.171 Sum_probs=68.0
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180 83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL 162 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~ 162 (448)
++.+|++|||| -|..+|..|+..|. .++-+|-+.- .++.+++. .+++....
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~-~ViaIDi~~~-------------------aV~~a~~~--------~~~~v~dD 66 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGF-DVIVIDINEK-------------------AVEKAKKL--------GLNAFVDD 66 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCC-EEEEEECCHH-------------------HHHHHHHh--------CCeEEECc
Confidence 45789999999 99999999999995 6777775522 33333332 12333333
Q ss_pred CCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCC
Q 013180 163 YDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGA 209 (448)
Q Consensus 163 ~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~ 209 (448)
+...+ .++-. ++|+|-.+--..+....|.+.+++.+.+++--.-.
T Consensus 67 lf~p~-~~~y~-~a~liysirpp~el~~~~~~la~~~~~~~~i~~l~ 111 (134)
T PRK04148 67 LFNPN-LEIYK-NAKLIYSIRPPRDLQPFILELAKKINVPLIIKPLS 111 (134)
T ss_pred CCCCC-HHHHh-cCCEEEEeCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 32222 23344 49999999999999999999999999999885543
No 122
>PRK13529 malate dehydrogenase; Provisional
Probab=94.94 E-value=0.15 Score=55.45 Aligned_cols=131 Identities=17% Similarity=0.201 Sum_probs=87.0
Q ss_pred HHHHhhhhHhhcCHHHH------------------HHhhCCcEEEEcCChHHHHHHHHHHH----cCC------ceEEEE
Q 013180 63 VAEQLTRNIQFFGVESQ------------------QKVSGSYVVVIGLGGVGSHAAAMLLR----SGV------GRLLLV 114 (448)
Q Consensus 63 ~~e~~~Rq~~~~G~~~q------------------~kL~~~~VlVVG~GGvGs~va~~Lar----sGV------g~i~Li 114 (448)
+.++|...+..|..+-| ++|++.+|+++|+|+.|..+|++|+. .|+ .+|.++
T Consensus 256 iL~ryr~~i~~FnDDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~v 335 (563)
T PRK13529 256 ILERYRDEICTFNDDIQGTGAVTLAGLLAALKITGEPLSDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMV 335 (563)
T ss_pred HHHHhccCCCeeccccchHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEE
Confidence 45677767777765533 47889999999999999999999997 699 599999
Q ss_pred eCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccCCccchHHHhcC-CCCeEEEccC--CHHHHHH
Q 013180 115 DFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSG-HPDFVLDCID--NIDTKVA 191 (448)
Q Consensus 115 D~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~-~~D~VIda~D--n~~~r~~ 191 (448)
|.+-+=.++ ..|+...|...++.. ++..... ..-...++.+.+.. ++|++|.++. +.-++..
T Consensus 336 D~~GLl~~~--------r~~l~~~k~~fa~~~----~~~~~~~---~~~~~~~L~e~v~~~kPtvLIG~S~~~g~Ft~ev 400 (563)
T PRK13529 336 DRQGLLTDD--------MPDLLDFQKPYARKR----EELADWD---TEGDVISLLEVVRNVKPTVLIGVSGQPGAFTEEI 400 (563)
T ss_pred cCCCeEeCC--------CCcchHHHHHHhhhc----ccccccc---cccCCCCHHHHHhccCCCEEEEecCCCCCCCHHH
Confidence 987542221 123444555544431 2210010 00111245555554 5799998886 4556777
Q ss_pred HHHHHHHcCCcEEEEcC
Q 013180 192 LLAACVRRGLKVLCATG 208 (448)
Q Consensus 192 l~~~c~~~~ip~I~~~g 208 (448)
+-.++.....|+|.+..
T Consensus 401 v~~Ma~~~erPIIFaLS 417 (563)
T PRK13529 401 VKEMAAHCERPIIFPLS 417 (563)
T ss_pred HHHHHhcCCCCEEEECC
Confidence 88888888899999874
No 123
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=94.84 E-value=0.17 Score=55.17 Aligned_cols=106 Identities=19% Similarity=0.237 Sum_probs=74.8
Q ss_pred HHhhCCcEEEEcCChHHHHHHHHHHH-----cCC------ceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHh
Q 013180 80 QKVSGSYVVVIGLGGVGSHAAAMLLR-----SGV------GRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFS 148 (448)
Q Consensus 80 ~kL~~~~VlVVG~GGvGs~va~~Lar-----sGV------g~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~ 148 (448)
++|++.+|+++|+|..|..+|.+|+. .|+ ++|.++|.+-+=..+ | .+++-..|...++.
T Consensus 317 ~~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~--r-----~~~l~~~k~~fa~~--- 386 (581)
T PLN03129 317 GDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTKS--R-----KDSLQPFKKPFAHD--- 386 (581)
T ss_pred CchhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeCC--C-----CccChHHHHHHHhh---
Confidence 47899999999999999999999998 477 799999988432221 1 01144455555543
Q ss_pred hhCCCceEEEEeccCCccchHHHhcC-CCCeEEEccC--CHHHHHHHHHHHHHcCCcEEEEcC
Q 013180 149 SIFPECHIDAKVLLYDASSEEEILSG-HPDFVLDCID--NIDTKVALLAACVRRGLKVLCATG 208 (448)
Q Consensus 149 ~inP~v~v~~~~~~~~~~~~~~ll~~-~~D~VIda~D--n~~~r~~l~~~c~~~~ip~I~~~g 208 (448)
.+. ..++.+.+.. ++|++|.++. +.-+...|-.+|.....|+|.+..
T Consensus 387 --~~~-----------~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~~rPIIFaLS 436 (581)
T PLN03129 387 --HEP-----------GASLLEAVKAIKPTVLIGLSGVGGTFTKEVLEAMASLNERPIIFALS 436 (581)
T ss_pred --ccc-----------CCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECC
Confidence 111 1345555553 5899999885 556677788888888999999874
No 124
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.82 E-value=0.2 Score=53.08 Aligned_cols=32 Identities=34% Similarity=0.481 Sum_probs=28.6
Q ss_pred CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
++|+|+|+|+.|..+|..|.+.|. ++++.|..
T Consensus 1 ~~v~viG~G~sG~s~a~~l~~~G~-~V~~~D~~ 32 (459)
T PRK02705 1 AIAHVIGLGRSGIAAARLLKAQGW-EVVVSDRN 32 (459)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCC-EEEEECCC
Confidence 479999999999999999999997 68888855
No 125
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=94.81 E-value=0.096 Score=52.59 Aligned_cols=117 Identities=21% Similarity=0.260 Sum_probs=69.1
Q ss_pred cEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhh-CCCceEEEEecc-C
Q 013180 86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSI-FPECHIDAKVLL-Y 163 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~i-nP~v~v~~~~~~-~ 163 (448)
+|.|||+|-.|+.++.+|+..|. ++.++|.+.-....+ .+.|..-+....+.+... ++++-+...+.. .
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~-~v~v~dr~~~~~~~~--------~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~ 72 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGH-EVVGYDRNPEAVEAL--------AEEGATGADSLEELVAKLPAPRVVWLMVPAGEI 72 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCC-eEEEEECCHHHHHHH--------HHCCCeecCCHHHHHhhcCCCCEEEEEecCCcH
Confidence 69999999999999999999996 588888763221111 011222122222223322 344444443322 1
Q ss_pred CccchHHHhc--CCCCeEEEccC-CHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 013180 164 DASSEEEILS--GHPDFVLDCID-NIDTKVALLAACVRRGLKVLCATGAGA 211 (448)
Q Consensus 164 ~~~~~~~ll~--~~~D~VIda~D-n~~~r~~l~~~c~~~~ip~I~~~g~G~ 211 (448)
..+....+.. .+-++|||++. ++..-..+.+.+.+.|+.++++.-.|+
T Consensus 73 ~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~dapvsG~ 123 (301)
T PRK09599 73 TDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVDVGTSGG 123 (301)
T ss_pred HHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEeCCCCcC
Confidence 1112222221 12478999865 455666778899999999999766664
No 126
>PRK08618 ornithine cyclodeaminase; Validated
Probab=94.78 E-value=0.16 Score=51.68 Aligned_cols=97 Identities=15% Similarity=0.272 Sum_probs=64.4
Q ss_pred HHhhCCcEEEEcCChHHHHHHHHHH-HcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEE
Q 013180 80 QKVSGSYVVVIGLGGVGSHAAAMLL-RSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDA 158 (448)
Q Consensus 80 ~kL~~~~VlVVG~GGvGs~va~~La-rsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~ 158 (448)
.+-..++|+|+|+|+.|...+..|. ..|+.++.++|.+ ..|++.+.+++.+..+ +++..
T Consensus 123 a~~~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~-------------------~~~a~~~~~~~~~~~~-~~~~~ 182 (325)
T PRK08618 123 AREDAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRT-------------------FEKAYAFAQEIQSKFN-TEIYV 182 (325)
T ss_pred cCCCCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCC-------------------HHHHHHHHHHHHHhcC-CcEEE
Confidence 3445688999999999998888775 4689999996544 2466666777764332 33333
Q ss_pred EeccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEE
Q 013180 159 KVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCA 206 (448)
Q Consensus 159 ~~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~ 206 (448)
+ ++.++.+.+ .|+||.||.+... .+. .+.+.|.-++..
T Consensus 183 ~------~~~~~~~~~-aDiVi~aT~s~~p--~i~-~~l~~G~hV~~i 220 (325)
T PRK08618 183 V------NSADEAIEE-ADIIVTVTNAKTP--VFS-EKLKKGVHINAV 220 (325)
T ss_pred e------CCHHHHHhc-CCEEEEccCCCCc--chH-HhcCCCcEEEec
Confidence 2 234555654 9999999987743 333 455667655443
No 127
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=94.76 E-value=0.2 Score=52.77 Aligned_cols=36 Identities=33% Similarity=0.605 Sum_probs=32.2
Q ss_pred hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180 82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ 118 (448)
Q Consensus 82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~ 118 (448)
+.+++|+|+|+|.+|..++..+...|+ ++.++|.|.
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~ 235 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDP 235 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECCh
Confidence 578899999999999999999999999 688888763
No 128
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=94.74 E-value=0.4 Score=48.62 Aligned_cols=100 Identities=13% Similarity=0.197 Sum_probs=58.6
Q ss_pred CcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccC
Q 013180 85 SYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY 163 (448)
Q Consensus 85 ~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~ 163 (448)
++|+|.|+ |-+|+++++.|...|=-+++.+|.+.- ++ ..+.+.-.++.+...+
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~---~~-----------------------~~~~~~~~~~~~~~Dl 55 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTD---RL-----------------------GDLVNHPRMHFFEGDI 55 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHH---HH-----------------------HHhccCCCeEEEeCCC
Confidence 47999997 999999999999864236777764321 00 0111111233333333
Q ss_pred C--ccchHHHhcCCCCeEEEccC-----------------CHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 013180 164 D--ASSEEEILSGHPDFVLDCID-----------------NIDTKVALLAACVRRGLKVLCATGAGA 211 (448)
Q Consensus 164 ~--~~~~~~ll~~~~D~VIda~D-----------------n~~~r~~l~~~c~~~~ip~I~~~g~G~ 211 (448)
. .+...+++.+ +|+||.|.. |...-..+.++|++.+..+|..++.+.
T Consensus 56 ~~~~~~~~~~~~~-~d~ViH~aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~~~~v~~SS~~v 121 (347)
T PRK11908 56 TINKEWIEYHVKK-CDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPSTSEV 121 (347)
T ss_pred CCCHHHHHHHHcC-CCEEEECcccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcCCeEEEEeccee
Confidence 2 2233444554 888886532 112234667888888889998776543
No 129
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=94.69 E-value=0.08 Score=53.14 Aligned_cols=117 Identities=19% Similarity=0.208 Sum_probs=65.8
Q ss_pred cEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhh-CCCceEEEEeccCC
Q 013180 86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSI-FPECHIDAKVLLYD 164 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~i-nP~v~v~~~~~~~~ 164 (448)
+|.|||+|-.|+.++.+|++.|. ++.++|.+.-....+... |...+....+..... .+++-+.+.+....
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~-~V~~~dr~~~~~~~l~~~--------g~~~~~s~~~~~~~~~~~dvIi~~vp~~~~ 72 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGH-DCVGYDHDQDAVKAMKED--------RTTGVANLRELSQRLSAPRVVWVMVPHGIV 72 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHc--------CCcccCCHHHHHhhcCCCCEEEEEcCchHH
Confidence 69999999999999999999995 577777664222111111 111111111111111 23433333332222
Q ss_pred ccchHHHhc--CCCCeEEEccCCH-HHHHHHHHHHHHcCCcEEEEcCCCC
Q 013180 165 ASSEEEILS--GHPDFVLDCIDNI-DTKVALLAACVRRGLKVLCATGAGA 211 (448)
Q Consensus 165 ~~~~~~ll~--~~~D~VIda~Dn~-~~r~~l~~~c~~~~ip~I~~~g~G~ 211 (448)
.+-.+++.. .+-++|||++... .....+.+.+.+.|++++.+.-.|+
T Consensus 73 ~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg 122 (298)
T TIGR00872 73 DAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGG 122 (298)
T ss_pred HHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCC
Confidence 222233321 1247899987653 5556666778888999998776654
No 130
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=94.64 E-value=0.064 Score=55.02 Aligned_cols=34 Identities=24% Similarity=0.390 Sum_probs=32.2
Q ss_pred HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEE
Q 013180 81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLV 114 (448)
Q Consensus 81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~Li 114 (448)
.|.+++|+|||+|-.|..++++|...|+.+|++.
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~ 204 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFC 204 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEE
Confidence 4889999999999999999999999999999993
No 131
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=94.61 E-value=0.4 Score=41.40 Aligned_cols=97 Identities=22% Similarity=0.231 Sum_probs=55.8
Q ss_pred cEEEEc-CChHHHHHHHHHHHcCC-ceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccC
Q 013180 86 YVVVIG-LGGVGSHAAAMLLRSGV-GRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY 163 (448)
Q Consensus 86 ~VlVVG-~GGvGs~va~~LarsGV-g~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~ 163 (448)
||.||| .|-+|++++..|...=- .-+.++.... ..|++=.+... ......++.... .
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~---------------~~g~~~~~~~~----~~~~~~~~~~~~--~ 59 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSR---------------SAGKPLSEVFP----HPKGFEDLSVED--A 59 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTT---------------TTTSBHHHTTG----GGTTTEEEBEEE--T
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeecc---------------ccCCeeehhcc----ccccccceeEee--c
Confidence 699999 89999999999998432 2233322221 24443111111 111122222221 1
Q ss_pred CccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCC
Q 013180 164 DASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGA 209 (448)
Q Consensus 164 ~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~ 209 (448)
..+. +. +.|+||.|+++-.++....++ .+.|+++|+.++.
T Consensus 60 ---~~~~-~~-~~Dvvf~a~~~~~~~~~~~~~-~~~g~~ViD~s~~ 99 (121)
T PF01118_consen 60 ---DPEE-LS-DVDVVFLALPHGASKELAPKL-LKAGIKVIDLSGD 99 (121)
T ss_dssp ---SGHH-HT-TESEEEE-SCHHHHHHHHHHH-HHTTSEEEESSST
T ss_pred ---chhH-hh-cCCEEEecCchhHHHHHHHHH-hhCCcEEEeCCHH
Confidence 1223 34 499999999997776665555 8899999996653
No 132
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=94.59 E-value=0.079 Score=57.64 Aligned_cols=34 Identities=32% Similarity=0.537 Sum_probs=30.8
Q ss_pred hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeC
Q 013180 82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDF 116 (448)
Q Consensus 82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~ 116 (448)
+++++|+|+|+||+|..++..|+..|+ ++.+++.
T Consensus 377 ~~~k~vlIlGaGGagrAia~~L~~~G~-~V~i~nR 410 (529)
T PLN02520 377 LAGKLFVVIGAGGAGKALAYGAKEKGA-RVVIANR 410 (529)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcC
Confidence 667899999999999999999999999 8999653
No 133
>PRK08251 short chain dehydrogenase; Provisional
Probab=94.58 E-value=0.63 Score=44.30 Aligned_cols=80 Identities=19% Similarity=0.233 Sum_probs=50.8
Q ss_pred CCcEEEEc-CChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180 84 GSYVVVIG-LGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL 162 (448)
Q Consensus 84 ~~~VlVVG-~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~ 162 (448)
+++|+|.| .||+|..+++.|++.|. ++.+++.+. .+.+.+.+.+.+.+|..+++.+...
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~-~v~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~D 61 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGR-DLALCARRT-------------------DRLEELKAELLARYPGIKVAVAALD 61 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCH-------------------HHHHHHHHHHHhhCCCceEEEEEcC
Confidence 56788887 68999999999999995 677766541 2233444555556666667666554
Q ss_pred CCcc-chHHHhc------CCCCeEEEcc
Q 013180 163 YDAS-SEEEILS------GHPDFVLDCI 183 (448)
Q Consensus 163 ~~~~-~~~~ll~------~~~D~VIda~ 183 (448)
++.. ....++. +..|+||.+.
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~id~vi~~a 89 (248)
T PRK08251 62 VNDHDQVFEVFAEFRDELGGLDRVIVNA 89 (248)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 4432 2222221 2478888765
No 134
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=94.57 E-value=0.49 Score=45.38 Aligned_cols=36 Identities=28% Similarity=0.449 Sum_probs=30.5
Q ss_pred HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
.+++++|+|.|+ |++|..+++.|+..|. ++.++|.+
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~-~V~~~~r~ 43 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQAGA-EVILNGRD 43 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHcCC-EEEEEeCC
Confidence 467899999986 9999999999999997 57776654
No 135
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=94.54 E-value=0.1 Score=54.19 Aligned_cols=35 Identities=34% Similarity=0.470 Sum_probs=32.2
Q ss_pred hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
+..++|+|+|+|.+|..++..|.+.|+ +++++|.+
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~ 199 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDIN 199 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECC
Confidence 678899999999999999999999998 69998875
No 136
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=94.53 E-value=0.13 Score=51.55 Aligned_cols=117 Identities=19% Similarity=0.229 Sum_probs=67.1
Q ss_pred cEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhh-CCCceEEEEecc-C
Q 013180 86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSI-FPECHIDAKVLL-Y 163 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~i-nP~v~v~~~~~~-~ 163 (448)
+|.|||+|-+|+.++.+|++.|. ++.++|.+.-...- + .+.|...+....+.+.+. ++++-+.+.+.. .
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~-~v~v~dr~~~~~~~-----~---~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~ 72 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGH-EVVGYDVNQEAVDV-----A---GKLGITARHSLEELVSKLEAPRTIWVMVPAGEV 72 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHHHH-----H---HHCCCeecCCHHHHHHhCCCCCEEEEEecCchH
Confidence 69999999999999999999996 57888765311110 1 112322222222222221 133333333322 1
Q ss_pred CccchHHHhc--CCCCeEEEccC-CHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 013180 164 DASSEEEILS--GHPDFVLDCID-NIDTKVALLAACVRRGLKVLCATGAGA 211 (448)
Q Consensus 164 ~~~~~~~ll~--~~~D~VIda~D-n~~~r~~l~~~c~~~~ip~I~~~g~G~ 211 (448)
..+-.+.+.. .+-.+|||++. ++..-..+.+.+.++++.++++.-.|+
T Consensus 73 ~~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vdapV~G~ 123 (299)
T PRK12490 73 TESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVDCGTSGG 123 (299)
T ss_pred HHHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEeCCCCCC
Confidence 1111233322 12368999854 466667777888889999999776665
No 137
>PRK07576 short chain dehydrogenase; Provisional
Probab=94.53 E-value=0.35 Score=46.99 Aligned_cols=39 Identities=23% Similarity=0.361 Sum_probs=32.8
Q ss_pred HHHHhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 78 SQQKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 78 ~q~kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
++.++++++|+|.|+ ||+|+++++.|+..|.. +.++|.+
T Consensus 3 ~~~~~~~k~ilItGasggIG~~la~~l~~~G~~-V~~~~r~ 42 (264)
T PRK07576 3 TMFDFAGKNVVVVGGTSGINLGIAQAFARAGAN-VAVASRS 42 (264)
T ss_pred ccccCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCC
Confidence 445788999999987 89999999999999964 8887754
No 138
>PRK06141 ornithine cyclodeaminase; Validated
Probab=94.50 E-value=0.19 Score=50.89 Aligned_cols=80 Identities=15% Similarity=0.106 Sum_probs=55.9
Q ss_pred HHHhhCCcEEEEcCChHHHHHHHHHHH-cCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEE
Q 013180 79 QQKVSGSYVVVIGLGGVGSHAAAMLLR-SGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHID 157 (448)
Q Consensus 79 q~kL~~~~VlVVG~GGvGs~va~~Lar-sGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~ 157 (448)
+.+...++|+|+|+|+.|...+..+.. .++.+|++++.+ ..|++.+++++.+... .+.
T Consensus 120 La~~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs-------------------~~~a~~~a~~~~~~g~--~~~ 178 (314)
T PRK06141 120 LARKDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRD-------------------PAKAEALAAELRAQGF--DAE 178 (314)
T ss_pred hCCCCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCC-------------------HHHHHHHHHHHHhcCC--ceE
Confidence 345567999999999999999987765 678899985332 4577777777765422 232
Q ss_pred EEeccCCccchHHHhcCCCCeEEEccCCH
Q 013180 158 AKVLLYDASSEEEILSGHPDFVLDCIDNI 186 (448)
Q Consensus 158 ~~~~~~~~~~~~~ll~~~~D~VIda~Dn~ 186 (448)
.. ++..+.+.+ +|+|+.|+.+.
T Consensus 179 ~~------~~~~~av~~-aDIVi~aT~s~ 200 (314)
T PRK06141 179 VV------TDLEAAVRQ-ADIISCATLST 200 (314)
T ss_pred Ee------CCHHHHHhc-CCEEEEeeCCC
Confidence 21 234455554 99999999865
No 139
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=94.49 E-value=0.15 Score=48.40 Aligned_cols=36 Identities=28% Similarity=0.504 Sum_probs=30.3
Q ss_pred HhhCCcEEEEc-CChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 81 KVSGSYVVVIG-LGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 81 kL~~~~VlVVG-~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
.+++++|+|.| .|++|.++++.|++.|. ++.+++.+
T Consensus 3 ~~~~~~ilItGasg~iG~~l~~~l~~~g~-~V~~~~r~ 39 (251)
T PRK12826 3 DLEGRVALVTGAARGIGRAIAVRLAADGA-EVIVVDIC 39 (251)
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCC
Confidence 46678999998 69999999999999997 57776655
No 140
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=94.48 E-value=0.29 Score=50.02 Aligned_cols=102 Identities=29% Similarity=0.493 Sum_probs=68.5
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHH-HHHHHHhhhCCCceEEEEec
Q 013180 83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKAL-CLKKHFSSIFPECHIDAKVL 161 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~-~~~~~l~~inP~v~v~~~~~ 161 (448)
....|.|+||||+|-.+..-+..+|.++|.-||...-.+ .+.+++-++. .=-+|-. =+.+.+
T Consensus 185 ~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl-~~A~~fGAT~--~vn~~~~~~vv~~i-------------- 247 (366)
T COG1062 185 PGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKL-ELAKKFGATH--FVNPKEVDDVVEAI-------------- 247 (366)
T ss_pred CCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHH-HHHHhcCCce--eecchhhhhHHHHH--------------
Confidence 368899999999999999999999999999998653221 2233332211 0000000 111222
Q ss_pred cCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcC
Q 013180 162 LYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATG 208 (448)
Q Consensus 162 ~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g 208 (448)
.++-.+..|++|||+.|.++...-.+.|++.|.-++-+..
T Consensus 248 -------~~~T~gG~d~~~e~~G~~~~~~~al~~~~~~G~~v~iGv~ 287 (366)
T COG1062 248 -------VELTDGGADYAFECVGNVEVMRQALEATHRGGTSVIIGVA 287 (366)
T ss_pred -------HHhcCCCCCEEEEccCCHHHHHHHHHHHhcCCeEEEEecC
Confidence 2222324999999999999988888999998887776543
No 141
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=94.44 E-value=0.62 Score=47.01 Aligned_cols=36 Identities=17% Similarity=0.306 Sum_probs=29.6
Q ss_pred hhCCcEEEEcC-ChHHHHHHHHHHHcC-CceEEEEeCC
Q 013180 82 VSGSYVVVIGL-GGVGSHAAAMLLRSG-VGRLLLVDFD 117 (448)
Q Consensus 82 L~~~~VlVVG~-GGvGs~va~~LarsG-Vg~i~LiD~D 117 (448)
+++++|+|.|+ |++|+++++.|+..| ..+++++|.+
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~ 39 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRD 39 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCC
Confidence 45788999986 899999999999987 4578887754
No 142
>PRK10537 voltage-gated potassium channel; Provisional
Probab=94.42 E-value=0.21 Score=52.31 Aligned_cols=100 Identities=11% Similarity=0.099 Sum_probs=59.2
Q ss_pred HHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCC-cccccccCC---------ccCc-----------
Q 013180 79 QQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSL-NRHAVATRA---------DVGT----------- 137 (448)
Q Consensus 79 q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNL-nRq~l~~~~---------dvG~----------- 137 (448)
+...++.+|+|+|.|.+|..+++.|...|. .+.++|.|.++..-- +..++..+. .+.+
T Consensus 235 ~~~~~k~HvII~G~g~lg~~v~~~L~~~g~-~vvVId~d~~~~~~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t~dD 313 (393)
T PRK10537 235 SHMHRKDHFIICGHSPLAINTYLGLRQRGQ-AVTVIVPLGLEHRLPDDADLIPGDSSDSAVLKKAGAARARAILALRDND 313 (393)
T ss_pred hhcccCCeEEEECCChHHHHHHHHHHHCCC-CEEEEECchhhhhccCCCcEEEeCCCCHHHHHhcCcccCCEEEEcCCCh
Confidence 334457899999999999999999998886 688999885532210 111111110 1111
Q ss_pred hHHHHHHHHHhhhCCCceEEEEeccCCccchHHHhcCCCCeEEE
Q 013180 138 PKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLD 181 (448)
Q Consensus 138 ~Kv~~~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~VId 181 (448)
.....+....+++||++++.+... ++++.+.+-.-.+|.||.
T Consensus 314 ~~Nl~ivL~ar~l~p~~kIIa~v~--~~~~~~~L~~~GaD~VIs 355 (393)
T PRK10537 314 ADNAFVVLAAKEMSSDVKTVAAVN--DSKNLEKIKRVHPDMIFS 355 (393)
T ss_pred HHHHHHHHHHHHhCCCCcEEEEEC--CHHHHHHHHhcCCCEEEC
Confidence 112233445677788777766543 344444443334777774
No 143
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=94.41 E-value=0.48 Score=40.00 Aligned_cols=91 Identities=18% Similarity=0.212 Sum_probs=58.0
Q ss_pred EEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccC-Cc
Q 013180 87 VVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY-DA 165 (448)
Q Consensus 87 VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~-~~ 165 (448)
|+|+|+|.+|-.+++.|...| -++.++|.|.=. + +.+.+.. +.++.... +.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~-~~vvvid~d~~~-------------------~----~~~~~~~----~~~i~gd~~~~ 52 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGG-IDVVVIDRDPER-------------------V----EELREEG----VEVIYGDATDP 52 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTT-SEEEEEESSHHH-------------------H----HHHHHTT----SEEEES-TTSH
T ss_pred eEEEcCCHHHHHHHHHHHhCC-CEEEEEECCcHH-------------------H----HHHHhcc----cccccccchhh
Confidence 789999999999999999944 679999988321 1 1122222 22222322 23
Q ss_pred cchHHHhcCCCCeEEEccCCHHHHHHHHHHHHH-cC-CcEEE
Q 013180 166 SSEEEILSGHPDFVLDCIDNIDTKVALLAACVR-RG-LKVLC 205 (448)
Q Consensus 166 ~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~-~~-ip~I~ 205 (448)
+...+.--.+++.||.++++......+...+++ .+ ++++.
T Consensus 53 ~~l~~a~i~~a~~vv~~~~~d~~n~~~~~~~r~~~~~~~ii~ 94 (116)
T PF02254_consen 53 EVLERAGIEKADAVVILTDDDEENLLIALLARELNPDIRIIA 94 (116)
T ss_dssp HHHHHTTGGCESEEEEESSSHHHHHHHHHHHHHHTTTSEEEE
T ss_pred hHHhhcCccccCEEEEccCCHHHHHHHHHHHHHHCCCCeEEE
Confidence 333333223599999999999888888888887 33 34443
No 144
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=94.41 E-value=0.24 Score=49.62 Aligned_cols=32 Identities=31% Similarity=0.439 Sum_probs=28.4
Q ss_pred cEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180 86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ 118 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~ 118 (448)
+|.|+|+|.+|+.++..|++.|. +++++|.+.
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~-~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGH-DVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-EEEEEECCH
Confidence 69999999999999999999996 488887653
No 145
>PRK07062 short chain dehydrogenase; Provisional
Probab=94.40 E-value=0.3 Score=47.23 Aligned_cols=62 Identities=21% Similarity=0.343 Sum_probs=43.3
Q ss_pred hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe
Q 013180 82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV 160 (448)
Q Consensus 82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~ 160 (448)
++++.++|.|+ ||+|.++++.|++.|.. +.+++.+. .|.+.+.+.+.+..|..++..+.
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~G~~-V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~~ 65 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAGAS-VAICGRDE-------------------ERLASAEARLREKFPGARLLAAR 65 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEeCCH-------------------HHHHHHHHHHHhhCCCceEEEEE
Confidence 67789999988 68999999999999974 77766542 23444555666666666665554
Q ss_pred ccC
Q 013180 161 LLY 163 (448)
Q Consensus 161 ~~~ 163 (448)
..+
T Consensus 66 ~D~ 68 (265)
T PRK07062 66 CDV 68 (265)
T ss_pred ecC
Confidence 433
No 146
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=94.40 E-value=0.2 Score=51.06 Aligned_cols=98 Identities=21% Similarity=0.232 Sum_probs=63.6
Q ss_pred HHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEE
Q 013180 78 SQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHID 157 (448)
Q Consensus 78 ~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~ 157 (448)
....|++++|.|||+|.+|..+|.+|..+|+ ++.+.|.. . +.. +.... ...++
T Consensus 10 ~~~~LkgKtVGIIG~GsIG~amA~nL~d~G~-~ViV~~r~--~------------------~s~---~~A~~--~G~~v- 62 (335)
T PRK13403 10 NVELLQGKTVAVIGYGSQGHAQAQNLRDSGV-EVVVGVRP--G------------------KSF---EVAKA--DGFEV- 62 (335)
T ss_pred ChhhhCcCEEEEEeEcHHHHHHHHHHHHCcC-EEEEEECc--c------------------hhh---HHHHH--cCCEE-
Confidence 4678999999999999999999999999998 46665421 0 000 00000 11111
Q ss_pred EEeccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHH---HcCCcEEEEcCCCC
Q 013180 158 AKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACV---RRGLKVLCATGAGA 211 (448)
Q Consensus 158 ~~~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~---~~~ip~I~~~g~G~ 211 (448)
.+..+++.. .|+|+.++-+..++..+++-.. +.+.-++.+.|+.-
T Consensus 63 --------~sl~Eaak~-ADVV~llLPd~~t~~V~~~eil~~MK~GaiL~f~hgfni 110 (335)
T PRK13403 63 --------MSVSEAVRT-AQVVQMLLPDEQQAHVYKAEVEENLREGQMLLFSHGFNI 110 (335)
T ss_pred --------CCHHHHHhc-CCEEEEeCCChHHHHHHHHHHHhcCCCCCEEEECCCcce
Confidence 135566665 9999999988777665553222 34555777777643
No 147
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.39 E-value=0.25 Score=50.02 Aligned_cols=103 Identities=31% Similarity=0.433 Sum_probs=69.4
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHH--hhhCCCceEEEEe
Q 013180 83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHF--SSIFPECHIDAKV 160 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l--~~inP~v~v~~~~ 160 (448)
..+.|.|.|+|+||..+++---.+|.++|.=||-. ..|-+.+++.= .=+||. +..-
T Consensus 192 ~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN-------------------~~Kf~~ak~fGaTe~iNp~-d~~~-- 249 (375)
T KOG0022|consen 192 PGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDIN-------------------PDKFEKAKEFGATEFINPK-DLKK-- 249 (375)
T ss_pred CCCEEEEEecchHHHHHHHhHHhcCcccEEEEecC-------------------HHHHHHHHhcCcceecChh-hccc--
Confidence 35899999999999999999999999999987732 22322222110 013443 1110
Q ss_pred ccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHc-CCcEEEEcCC
Q 013180 161 LLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRR-GLKVLCATGA 209 (448)
Q Consensus 161 ~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~-~ip~I~~~g~ 209 (448)
.+ .+-+.++-.+.+|+-++|+.|.++...-...|++- |+.++-+...
T Consensus 250 -~i-~evi~EmTdgGvDysfEc~G~~~~m~~al~s~h~GwG~sv~iGv~~ 297 (375)
T KOG0022|consen 250 -PI-QEVIIEMTDGGVDYSFECIGNVSTMRAALESCHKGWGKSVVIGVAA 297 (375)
T ss_pred -cH-HHHHHHHhcCCceEEEEecCCHHHHHHHHHHhhcCCCeEEEEEecC
Confidence 00 11223334456999999999999999999999986 8888775544
No 148
>PTZ00117 malate dehydrogenase; Provisional
Probab=94.36 E-value=0.06 Score=54.76 Aligned_cols=36 Identities=31% Similarity=0.550 Sum_probs=33.0
Q ss_pred hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
.++.+|.|||+|.+|+.++..|+..|+.+|.|+|-|
T Consensus 3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~ 38 (319)
T PTZ00117 3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVI 38 (319)
T ss_pred CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECC
Confidence 467899999999999999999999998889999975
No 149
>PRK08339 short chain dehydrogenase; Provisional
Probab=94.33 E-value=0.75 Score=44.77 Aligned_cols=35 Identities=26% Similarity=0.459 Sum_probs=29.7
Q ss_pred hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
|+++.++|.|+ ||+|.++++.|++.|. ++.++|.+
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~ 41 (263)
T PRK08339 6 LSGKLAFTTASSKGIGFGVARVLARAGA-DVILLSRN 41 (263)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCC
Confidence 67788999987 6899999999999996 58887654
No 150
>PRK07063 short chain dehydrogenase; Provisional
Probab=94.30 E-value=0.3 Score=47.04 Aligned_cols=83 Identities=19% Similarity=0.256 Sum_probs=51.4
Q ss_pred HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEE
Q 013180 81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK 159 (448)
Q Consensus 81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~ 159 (448)
++++++|+|.|+ ||+|.++++.|+..|. ++.++|.+ ..+.+.+.+.+.+.++..++..+
T Consensus 4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~~ 63 (260)
T PRK07063 4 RLAGKVALVTGAAQGIGAAIARAFAREGA-AVALADLD-------------------AALAERAAAAIARDVAGARVLAV 63 (260)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC-------------------HHHHHHHHHHHHhccCCceEEEE
Confidence 477889999986 7999999999999997 47776532 23445555666554445555555
Q ss_pred eccCCc-cchHHHhc------CCCCeEEEcc
Q 013180 160 VLLYDA-SSEEEILS------GHPDFVLDCI 183 (448)
Q Consensus 160 ~~~~~~-~~~~~ll~------~~~D~VIda~ 183 (448)
...++. +....++. +..|++|.+.
T Consensus 64 ~~Dl~~~~~~~~~~~~~~~~~g~id~li~~a 94 (260)
T PRK07063 64 PADVTDAASVAAAVAAAEEAFGPLDVLVNNA 94 (260)
T ss_pred EccCCCHHHHHHHHHHHHHHhCCCcEEEECC
Confidence 444332 22333322 2366666543
No 151
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=94.30 E-value=0.26 Score=54.48 Aligned_cols=94 Identities=11% Similarity=0.190 Sum_probs=62.8
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccC
Q 013180 84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY 163 (448)
Q Consensus 84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~ 163 (448)
+.+|+|+|+|.+|..+++.|...|+ +++++|.|.- +++.++ +. ..+ ++....
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~-------------------~v~~~~----~~--g~~--v~~GDa 451 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKM-RITVLERDIS-------------------AVNLMR----KY--GYK--VYYGDA 451 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCC-CEEEEECCHH-------------------HHHHHH----hC--CCe--EEEeeC
Confidence 5799999999999999999999998 5899998841 222221 11 122 222222
Q ss_pred C-ccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcC--CcEEE
Q 013180 164 D-ASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRG--LKVLC 205 (448)
Q Consensus 164 ~-~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~--ip~I~ 205 (448)
+ ++..++.--.++|.||.++||.+....+...+++++ +++|.
T Consensus 452 t~~~~L~~agi~~A~~vv~~~~d~~~n~~i~~~~r~~~p~~~Iia 496 (601)
T PRK03659 452 TQLELLRAAGAEKAEAIVITCNEPEDTMKIVELCQQHFPHLHILA 496 (601)
T ss_pred CCHHHHHhcCCccCCEEEEEeCCHHHHHHHHHHHHHHCCCCeEEE
Confidence 2 222222222359999999999998888888888763 34554
No 152
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=94.29 E-value=0.34 Score=48.81 Aligned_cols=122 Identities=22% Similarity=0.297 Sum_probs=71.4
Q ss_pred cEEEE-cCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccC------CccCchHHHHHHHHHhhhCCCceEEE
Q 013180 86 YVVVI-GLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATR------ADVGTPKALCLKKHFSSIFPECHIDA 158 (448)
Q Consensus 86 ~VlVV-G~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~------~dvG~~Kv~~~~~~l~~inP~v~v~~ 158 (448)
+|+|. |+|=+||+++..|..+|.. +.++|+ ++|=+|..+... .|+.- .+.+.+.+.+..|+.-++.
T Consensus 2 ~iLVtGGAGYIGSHtv~~Ll~~G~~-vvV~DN----L~~g~~~~v~~~~~~f~~gDi~D--~~~L~~vf~~~~idaViHF 74 (329)
T COG1087 2 KVLVTGGAGYIGSHTVRQLLKTGHE-VVVLDN----LSNGHKIALLKLQFKFYEGDLLD--RALLTAVFEENKIDAVVHF 74 (329)
T ss_pred eEEEecCcchhHHHHHHHHHHCCCe-EEEEec----CCCCCHHHhhhccCceEEecccc--HHHHHHHHHhcCCCEEEEC
Confidence 57777 7899999999999999965 677674 344444443321 23322 2344455555555544442
Q ss_pred EeccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCc-EEEEcCCCCccCCCceEEc
Q 013180 159 KVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLK-VLCATGAGARADPTRIRVA 221 (448)
Q Consensus 159 ~~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip-~I~~~g~G~k~dpt~i~i~ 221 (448)
-....-.|+...-+.- || .|.-.-..|.+.|+++|+. +|.++.+...++|+++-|.
T Consensus 75 Aa~~~VgESv~~Pl~Y-y~------NNv~gTl~Ll~am~~~gv~~~vFSStAavYG~p~~~PI~ 131 (329)
T COG1087 75 AASISVGESVQNPLKY-YD------NNVVGTLNLIEAMLQTGVKKFIFSSTAAVYGEPTTSPIS 131 (329)
T ss_pred ccccccchhhhCHHHH-Hh------hchHhHHHHHHHHHHhCCCEEEEecchhhcCCCCCcccC
Confidence 2222122222222211 11 2444556788899988865 6777888888999885443
No 153
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=94.26 E-value=0.19 Score=50.63 Aligned_cols=72 Identities=25% Similarity=0.272 Sum_probs=48.4
Q ss_pred EEEEcCChHHHHHHHHHHHcCC-ceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCC---ceEEEEecc
Q 013180 87 VVVIGLGGVGSHAAAMLLRSGV-GRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPE---CHIDAKVLL 162 (448)
Q Consensus 87 VlVVG~GGvGs~va~~LarsGV-g~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~---v~v~~~~~~ 162 (448)
|.|||+|+||+.+|..|+..|+ .+|.|+|.+ ..|++..+.-|.+..+. +++..
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~-------------------~~~~~g~~~DL~~~~~~~~~~~i~~---- 57 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVN-------------------EEKAKGDALDLSHASAFLATGTIVR---- 57 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC-------------------ccHHHHHHHhHHHhccccCCCeEEE----
Confidence 5799999999999999999997 569998864 23444555556655543 22221
Q ss_pred CCccchHHHhcCCCCeEEEccCC
Q 013180 163 YDASSEEEILSGHPDFVLDCIDN 185 (448)
Q Consensus 163 ~~~~~~~~ll~~~~D~VIda~Dn 185 (448)
. .+. +-+.+ +|+||.|...
T Consensus 58 -~-~~~-~~l~~-aDiVIitag~ 76 (300)
T cd00300 58 -G-GDY-ADAAD-ADIVVITAGA 76 (300)
T ss_pred -C-CCH-HHhCC-CCEEEEcCCC
Confidence 1 112 33444 9999988864
No 154
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.25 E-value=0.18 Score=50.28 Aligned_cols=32 Identities=28% Similarity=0.339 Sum_probs=29.1
Q ss_pred CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
.+|.|||+|..|+.+|..|++.|. +++++|.+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~ 35 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDIS 35 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCC
Confidence 579999999999999999999996 69999865
No 155
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=94.22 E-value=0.24 Score=53.83 Aligned_cols=128 Identities=13% Similarity=0.144 Sum_probs=84.6
Q ss_pred HHHHhhhhHhhcCHHHH------------------HHhhCCcEEEEcCChHHHHHHHHHH----HcCC------ceEEEE
Q 013180 63 VAEQLTRNIQFFGVESQ------------------QKVSGSYVVVIGLGGVGSHAAAMLL----RSGV------GRLLLV 114 (448)
Q Consensus 63 ~~e~~~Rq~~~~G~~~q------------------~kL~~~~VlVVG~GGvGs~va~~La----rsGV------g~i~Li 114 (448)
+.++|...+..|..+-| ++|++.+|++.|+|+.|.-+|..|+ +.|+ .+|.++
T Consensus 258 iL~kyr~~i~~FnDDiQGTaaV~lAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~m~~~Gls~eeA~~~i~~v 337 (559)
T PTZ00317 258 LLERYQNKYRCFNDDIQGTGAVIAAGFLNALKLSGVPPEEQRIVFFGAGSAAIGVANNIADLAAEYGVTREEALKSFYLV 337 (559)
T ss_pred HHHHhccCCCEecccchhHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEE
Confidence 44666666777765543 4789999999999999999999988 4799 899999
Q ss_pred eCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccCCccchHHHhcC-CCCeEEEccC--CHHHHHH
Q 013180 115 DFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSG-HPDFVLDCID--NIDTKVA 191 (448)
Q Consensus 115 D~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~-~~D~VIda~D--n~~~r~~ 191 (448)
|.+-+-.++- .+++-..|...++.. ++. ......++.+.+.. ++|++|.++. +.-++..
T Consensus 338 D~~GLl~~~r-------~~~l~~~k~~fa~~~----~~~-------~~~~~~~L~e~v~~~KPtvLIG~S~~~g~Ft~ev 399 (559)
T PTZ00317 338 DSKGLVTTTR-------GDKLAKHKVPFARTD----ISA-------EDSSLKTLEDVVRFVKPTALLGLSGVGGVFTEEV 399 (559)
T ss_pred cCCCeEeCCC-------CccccHHHHHHhccc----ccc-------ccccCCCHHHHHhccCCCEEEEecCCCCCCCHHH
Confidence 9774322211 011334444433321 100 00011345555543 5799999885 4556778
Q ss_pred HHHHHHHcCCcEEEEcC
Q 013180 192 LLAACVRRGLKVLCATG 208 (448)
Q Consensus 192 l~~~c~~~~ip~I~~~g 208 (448)
+-.++.....|+|.+..
T Consensus 400 v~~Ma~~~~rPIIFaLS 416 (559)
T PTZ00317 400 VKTMASNVERPIIFPLS 416 (559)
T ss_pred HHHHHhcCCCCEEEECC
Confidence 88888888899999874
No 156
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=94.21 E-value=0.17 Score=50.19 Aligned_cols=31 Identities=26% Similarity=0.453 Sum_probs=28.2
Q ss_pred cEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
+|+|+|+|.+|+.+|..|+++| .+++++|.+
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g-~~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAG-HDVTLVARR 32 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCC-CeEEEEECC
Confidence 6999999999999999999999 479998864
No 157
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=94.21 E-value=0.18 Score=51.81 Aligned_cols=102 Identities=21% Similarity=0.194 Sum_probs=65.7
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe-c
Q 013180 83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV-L 161 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~-~ 161 (448)
...+|+|+|+|.+|--++..+...|..+|.++|.+. .|.+.+++.... .+.... .
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~-------------------~Rl~~A~~~~g~-----~~~~~~~~ 223 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSP-------------------ERLELAKEAGGA-----DVVVNPSE 223 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCH-------------------HHHHHHHHhCCC-----eEeecCcc
Confidence 334899999999999999999999999999987652 122333322211 111000 0
Q ss_pred cCCccchHHHhcC-CCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcC
Q 013180 162 LYDASSEEEILSG-HPDFVLDCIDNIDTKVALLAACVRRGLKVLCATG 208 (448)
Q Consensus 162 ~~~~~~~~~ll~~-~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g 208 (448)
........++..+ .+|+||+|+.+..+.....++++..|.-++-+..
T Consensus 224 ~~~~~~~~~~t~g~g~D~vie~~G~~~~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 224 DDAGAEILELTGGRGADVVIEAVGSPPALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred ccHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhcCCCEEEEEecc
Confidence 0000011122222 4999999999998888999999988886666543
No 158
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=94.19 E-value=0.39 Score=46.27 Aligned_cols=93 Identities=11% Similarity=0.128 Sum_probs=54.7
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHcCC---ceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEE
Q 013180 83 SGSYVVVIGLGGVGSHAAAMLLRSGV---GRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK 159 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGV---g~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~ 159 (448)
++.+|.|||+|.+|+.++..|++.|. .++.+++. + ...|.+.+++. .+ ++ ..
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~----------~--------~~~~~~~~~~~----~~-~~--~~ 57 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNR----------S--------NVEKLDQLQAR----YN-VS--TT 57 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECC----------C--------CHHHHHHHHHH----cC-cE--Ee
Confidence 45789999999999999999999873 22333221 0 01233322222 11 22 11
Q ss_pred eccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHH-cCCcEEEEc
Q 013180 160 VLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVR-RGLKVLCAT 207 (448)
Q Consensus 160 ~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~-~~ip~I~~~ 207 (448)
.+..+.+.+ +|+||.|+-+...+..+.++... .+..+|+.+
T Consensus 58 ------~~~~~~~~~-~DiViiavp~~~~~~v~~~l~~~~~~~~vis~~ 99 (245)
T PRK07634 58 ------TDWKQHVTS-VDTIVLAMPPSAHEELLAELSPLLSNQLVVTVA 99 (245)
T ss_pred ------CChHHHHhc-CCEEEEecCHHHHHHHHHHHHhhccCCEEEEEC
Confidence 123445554 99999999987776666555422 345566654
No 159
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=94.15 E-value=0.18 Score=52.70 Aligned_cols=118 Identities=18% Similarity=0.216 Sum_probs=77.5
Q ss_pred HHhhhhHhhcCHHHH------------------HHhhCCcEEEEcCChHHHHHHHHHHHcCCc--eEEEEeCCccccCCC
Q 013180 65 EQLTRNIQFFGVESQ------------------QKVSGSYVVVIGLGGVGSHAAAMLLRSGVG--RLLLVDFDQVSVSSL 124 (448)
Q Consensus 65 e~~~Rq~~~~G~~~q------------------~kL~~~~VlVVG~GGvGs~va~~LarsGVg--~i~LiD~D~V~~sNL 124 (448)
.||.-+|..|..+-| ++|++.+|++.|+|..|..++..|...|+. +|.++|.--+-..+
T Consensus 162 lr~~~~IPvFhDDqqGTaiv~lA~llnalk~~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~l~~~- 240 (432)
T COG0281 162 LRYRMNIPVFHDDQQGTAIVTLAALLNALKLTGKKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGLLYDG- 240 (432)
T ss_pred HhhcCCCCcccccccHHHHHHHHHHHHHHHHhCCCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecCCcccCC-
Confidence 455556777865533 489999999999999999999999999998 99999976432211
Q ss_pred cccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccCCccchHHHhcCCCCeEEEccCCHH-HHHHHHHHHHHcCCcE
Q 013180 125 NRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNID-TKVALLAACVRRGLKV 203 (448)
Q Consensus 125 nRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~VIda~Dn~~-~r~~l~~~c~~~~ip~ 203 (448)
|.-+ +.++.|.+.+.+...... . .+.+. ++|+.|.|+..-. +...+-+++.. |+
T Consensus 241 -r~~~----~~~~~k~~~a~~~~~~~~---~-------------~~~~~-~adv~iG~S~~G~~t~e~V~~Ma~~---Pi 295 (432)
T COG0281 241 -REDL----TMNQKKYAKAIEDTGERT---L-------------DLALA-GADVLIGVSGVGAFTEEMVKEMAKH---PI 295 (432)
T ss_pred -Cccc----ccchHHHHHHHhhhcccc---c-------------ccccc-CCCEEEEcCCCCCcCHHHHHHhccC---CE
Confidence 1110 246666665543322211 1 11233 4999999998633 33444455443 99
Q ss_pred EEEcC
Q 013180 204 LCATG 208 (448)
Q Consensus 204 I~~~g 208 (448)
|.++.
T Consensus 296 Ifala 300 (432)
T COG0281 296 IFALA 300 (432)
T ss_pred EeecC
Confidence 99874
No 160
>PRK07831 short chain dehydrogenase; Provisional
Probab=94.15 E-value=0.32 Score=46.98 Aligned_cols=35 Identities=31% Similarity=0.562 Sum_probs=28.5
Q ss_pred HhhCCcEEEEcC-C-hHHHHHHHHHHHcCCceEEEEeC
Q 013180 81 KVSGSYVVVIGL-G-GVGSHAAAMLLRSGVGRLLLVDF 116 (448)
Q Consensus 81 kL~~~~VlVVG~-G-GvGs~va~~LarsGVg~i~LiD~ 116 (448)
.+++++++|.|. | |+|..+++.|+..|.. +.++|.
T Consensus 14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~-V~~~~~ 50 (262)
T PRK07831 14 LLAGKVVLVTAAAGTGIGSATARRALEEGAR-VVISDI 50 (262)
T ss_pred ccCCCEEEEECCCcccHHHHHHHHHHHcCCE-EEEEeC
Confidence 345688999997 6 8999999999999975 777553
No 161
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.11 E-value=0.087 Score=52.25 Aligned_cols=32 Identities=28% Similarity=0.464 Sum_probs=29.2
Q ss_pred CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
++|.|||+|-+|+.+|..|+++|. +++++|.+
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~ 35 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGY-DVVMVDIS 35 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCC-ceEEEeCC
Confidence 479999999999999999999997 78898865
No 162
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=94.07 E-value=0.5 Score=49.73 Aligned_cols=94 Identities=16% Similarity=0.159 Sum_probs=58.7
Q ss_pred CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccC-
Q 013180 85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY- 163 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~- 163 (448)
.+|+|+|+|.+|..+++.|...|. .+.++|.|.- +++.+++ ... +..+....
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~-~v~vid~~~~-------------------~~~~~~~-----~~~--~~~~~gd~~ 53 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENN-DVTVIDTDEE-------------------RLRRLQD-----RLD--VRTVVGNGS 53 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-cEEEEECCHH-------------------HHHHHHh-----hcC--EEEEEeCCC
Confidence 379999999999999999999996 5788876521 1111111 011 22222222
Q ss_pred CccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHc-CCcEEE
Q 013180 164 DASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRR-GLKVLC 205 (448)
Q Consensus 164 ~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~-~ip~I~ 205 (448)
+.....+.-..++|.||.|+++......+...|++. +.+.+.
T Consensus 54 ~~~~l~~~~~~~a~~vi~~~~~~~~n~~~~~~~r~~~~~~~ii 96 (453)
T PRK09496 54 SPDVLREAGAEDADLLIAVTDSDETNMVACQIAKSLFGAPTTI 96 (453)
T ss_pred CHHHHHHcCCCcCCEEEEecCChHHHHHHHHHHHHhcCCCeEE
Confidence 222233331235999999999888777777778775 554444
No 163
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=94.05 E-value=0.24 Score=54.94 Aligned_cols=89 Identities=20% Similarity=0.281 Sum_probs=60.8
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccC
Q 013180 84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY 163 (448)
Q Consensus 84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~ 163 (448)
+.+|+|+|+|-+|..+++.|...|+ +++++|.|.- +++.+++ . ..++ +....
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~-------------------~v~~~~~----~--g~~v--~~GDa 451 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGV-KMTVLDHDPD-------------------HIETLRK----F--GMKV--FYGDA 451 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCC-CEEEEECCHH-------------------HHHHHHh----c--CCeE--EEEeC
Confidence 5799999999999999999999997 4899998842 2222221 1 2222 22222
Q ss_pred C-ccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcC
Q 013180 164 D-ASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRG 200 (448)
Q Consensus 164 ~-~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ 200 (448)
+ ++...+.--+++|.||.|+||.+....+...++++.
T Consensus 452 t~~~~L~~agi~~A~~vvv~~~d~~~n~~i~~~ar~~~ 489 (621)
T PRK03562 452 TRMDLLESAGAAKAEVLINAIDDPQTSLQLVELVKEHF 489 (621)
T ss_pred CCHHHHHhcCCCcCCEEEEEeCCHHHHHHHHHHHHHhC
Confidence 2 222222212359999999999999888888888763
No 164
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=94.03 E-value=0.79 Score=43.12 Aligned_cols=35 Identities=26% Similarity=0.454 Sum_probs=29.6
Q ss_pred hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
+.+++|+|.|+ |++|..+++.|+..|.. +.+++.+
T Consensus 3 ~~~~~ilItGasg~iG~~l~~~l~~~g~~-v~~~~r~ 38 (246)
T PRK05653 3 LQGKTALVTGASRGIGRAIALRLAADGAK-VVIYDSN 38 (246)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCC
Confidence 45678999986 89999999999999986 7887665
No 165
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=94.03 E-value=0.078 Score=47.10 Aligned_cols=89 Identities=20% Similarity=0.275 Sum_probs=51.2
Q ss_pred EEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEec-cCCc
Q 013180 87 VVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL-LYDA 165 (448)
Q Consensus 87 VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~-~~~~ 165 (448)
|+|+|+|++|+..|..|.++|.. +++++... ..+.++++-+. -..++-+...... ....
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~-V~l~~r~~-~~~~~~~~g~~------------------~~~~~~~~~~~~~~~~~~ 60 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHD-VTLVSRSP-RLEAIKEQGLT------------------ITGPDGDETVQPPIVISA 60 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCE-EEEEESHH-HHHHHHHHCEE------------------EEETTEEEEEEEEEEESS
T ss_pred CEEECcCHHHHHHHHHHHHCCCc-eEEEEccc-cHHhhhheeEE------------------EEecccceecccccccCc
Confidence 78999999999999999998865 77766554 22223322211 0011101111111 1111
Q ss_pred cchHHHhcCCCCeEEEccCCHHHHHHHHHHHHH
Q 013180 166 SSEEEILSGHPDFVLDCIDNIDTKVALLAACVR 198 (448)
Q Consensus 166 ~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~ 198 (448)
+ ... .+.+|+||.|+=+.+....+..+...
T Consensus 61 ~--~~~-~~~~D~viv~vKa~~~~~~l~~l~~~ 90 (151)
T PF02558_consen 61 P--SAD-AGPYDLVIVAVKAYQLEQALQSLKPY 90 (151)
T ss_dssp H--GHH-HSTESEEEE-SSGGGHHHHHHHHCTG
T ss_pred c--hhc-cCCCcEEEEEecccchHHHHHHHhhc
Confidence 1 112 23599999999999988877775443
No 166
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=94.02 E-value=0.76 Score=50.43 Aligned_cols=111 Identities=19% Similarity=0.211 Sum_probs=62.3
Q ss_pred HHHhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhh-------
Q 013180 79 QQKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSI------- 150 (448)
Q Consensus 79 q~kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~i------- 150 (448)
.+...++.|+|.|+ |++|..+++.|++.|. ++++++.+. .|.+.+.+.+.++
T Consensus 75 ~~~~~gKvVLVTGATGgIG~aLAr~LLk~G~-~Vval~Rn~-------------------ekl~~l~~~l~~~~L~~~Ga 134 (576)
T PLN03209 75 LDTKDEDLAFVAGATGKVGSRTVRELLKLGF-RVRAGVRSA-------------------QRAESLVQSVKQMKLDVEGT 134 (576)
T ss_pred cccCCCCEEEEECCCCHHHHHHHHHHHHCCC-eEEEEeCCH-------------------HHHHHHHHHhhhhccccccc
Confidence 33445677888886 9999999999999996 466654431 1222222322221
Q ss_pred CCCceEEEEeccCC-ccchHHHhcCCCCeEEEccCCH---------------HHHHHHHHHHHHcCC-cEEEEcCCC
Q 013180 151 FPECHIDAKVLLYD-ASSEEEILSGHPDFVLDCIDNI---------------DTKVALLAACVRRGL-KVLCATGAG 210 (448)
Q Consensus 151 nP~v~v~~~~~~~~-~~~~~~ll~~~~D~VIda~Dn~---------------~~r~~l~~~c~~~~i-p~I~~~g~G 210 (448)
.+.-+++.+...+. .+.....+.+ +|+||.|.... ..-..+.++|.+.++ .+|..+..|
T Consensus 135 ~~~~~v~iV~gDLtD~esI~~aLgg-iDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVgRIV~VSSig 210 (576)
T PLN03209 135 QPVEKLEIVECDLEKPDQIGPALGN-ASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVNHFILVTSLG 210 (576)
T ss_pred cccCceEEEEecCCCHHHHHHHhcC-CCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCCEEEEEccch
Confidence 11122444433333 3344455654 99999886421 112345677777664 466555444
No 167
>PRK06523 short chain dehydrogenase; Provisional
Probab=94.02 E-value=0.44 Score=45.80 Aligned_cols=73 Identities=21% Similarity=0.302 Sum_probs=45.2
Q ss_pred HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchH-HHHHHHHHhhhCCCceE
Q 013180 81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPK-ALCLKKHFSSIFPECHI 156 (448)
Q Consensus 81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~K-v~~~~~~l~~inP~v~v 156 (448)
++++++|+|.|+ ||+|+++++.|+..|. ++.+++.+.-. ++.....+...|+..+. ++.+.+.+.+..+.+++
T Consensus 6 ~~~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~r~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~ 80 (260)
T PRK06523 6 ELAGKRALVTGGTKGIGAATVARLLEAGA-RVVTTARSRPD--DLPEGVEFVAADLTTAEGCAAVARAVLERLGGVDI 80 (260)
T ss_pred CCCCCEEEEECCCCchhHHHHHHHHHCCC-EEEEEeCChhh--hcCCceeEEecCCCCHHHHHHHHHHHHHHcCCCCE
Confidence 577899999986 8999999999999997 58888876432 22222223344555432 33333444444333333
No 168
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=93.95 E-value=0.25 Score=50.20 Aligned_cols=78 Identities=15% Similarity=0.136 Sum_probs=54.2
Q ss_pred HHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEE
Q 013180 80 QKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK 159 (448)
Q Consensus 80 ~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~ 159 (448)
..+++++|.|||+|.+|..+|+.|...|+ ++..+|... .. . +. +...
T Consensus 132 ~~l~g~tvgIvG~G~IG~~vA~~l~afG~-~V~~~~~~~--------~~-----~-----------------~~--~~~~ 178 (312)
T PRK15469 132 YHREDFTIGILGAGVLGSKVAQSLQTWGF-PLRCWSRSR--------KS-----W-----------------PG--VQSF 178 (312)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCC--------CC-----C-----------------CC--ceee
Confidence 35889999999999999999999999997 466666421 00 0 00 1111
Q ss_pred eccCCccchHHHhcCCCCeEEEccC-CHHHHHHHHH
Q 013180 160 VLLYDASSEEEILSGHPDFVLDCID-NIDTKVALLA 194 (448)
Q Consensus 160 ~~~~~~~~~~~ll~~~~D~VIda~D-n~~~r~~l~~ 194 (448)
....+.++++.. +|+|+.|.. +.+++..+++
T Consensus 179 ---~~~~~l~e~l~~-aDvvv~~lPlt~~T~~li~~ 210 (312)
T PRK15469 179 ---AGREELSAFLSQ-TRVLINLLPNTPETVGIINQ 210 (312)
T ss_pred ---cccccHHHHHhc-CCEEEECCCCCHHHHHHhHH
Confidence 123456777876 999998886 5677777774
No 169
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=93.93 E-value=0.082 Score=53.85 Aligned_cols=36 Identities=22% Similarity=0.475 Sum_probs=32.5
Q ss_pred hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
++..||.|||+|.+|+.+|..|+..|...+.|+|-+
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~ 39 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIV 39 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 566899999999999999999999998679999865
No 170
>PRK12862 malic enzyme; Reviewed
Probab=93.93 E-value=0.22 Score=56.44 Aligned_cols=101 Identities=16% Similarity=0.170 Sum_probs=70.1
Q ss_pred HHhhCCcEEEEcCChHHHHHHHHHHHcCCc--eEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEE
Q 013180 80 QKVSGSYVVVIGLGGVGSHAAAMLLRSGVG--RLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHID 157 (448)
Q Consensus 80 ~kL~~~~VlVVG~GGvGs~va~~LarsGVg--~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~ 157 (448)
++|++.||++.|+|..|..+++.|...|+. +|.++|..-+=..+- .+++...|...+++. |+
T Consensus 189 ~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r-------~~~l~~~~~~~a~~~----~~----- 252 (763)
T PRK12862 189 KDIEDVKLVASGAGAAALACLDLLVSLGVKRENIWVTDIKGVVYEGR-------TELMDPWKARYAQKT----DA----- 252 (763)
T ss_pred CChhhcEEEEEChhHHHHHHHHHHHHcCCCcccEEEEcCCCeeeCCC-------CccccHHHHHHhhhc----cc-----
Confidence 578999999999999999999999999995 999999764422211 011334455544431 22
Q ss_pred EEeccCCccchHHHhcCCCCeEEEccC-CHHHHHHHHHHHHHcCCcEEEEcC
Q 013180 158 AKVLLYDASSEEEILSGHPDFVLDCID-NIDTKVALLAACVRRGLKVLCATG 208 (448)
Q Consensus 158 ~~~~~~~~~~~~~ll~~~~D~VIda~D-n~~~r~~l~~~c~~~~ip~I~~~g 208 (448)
.++.+.+.+ +|++|.++. +.=++..+-.+| ..|+|.+..
T Consensus 253 --------~~l~e~~~~-~~v~iG~s~~g~~~~~~v~~M~---~~piifals 292 (763)
T PRK12862 253 --------RTLAEVIEG-ADVFLGLSAAGVLKPEMVKKMA---PRPLIFALA 292 (763)
T ss_pred --------CCHHHHHcC-CCEEEEcCCCCCCCHHHHHHhc---cCCEEEeCC
Confidence 256777776 899998776 233455666666 579998874
No 171
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=93.91 E-value=0.11 Score=52.40 Aligned_cols=36 Identities=28% Similarity=0.400 Sum_probs=32.6
Q ss_pred HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
.+.+++|+|+|+|++|..++..|.+.|. +++++|.+
T Consensus 149 ~l~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~ 184 (296)
T PRK08306 149 TIHGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARK 184 (296)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence 3578999999999999999999999997 89998776
No 172
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.89 E-value=0.19 Score=51.25 Aligned_cols=97 Identities=16% Similarity=0.105 Sum_probs=55.2
Q ss_pred CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccCC
Q 013180 85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYD 164 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~~ 164 (448)
++|.|||+|-.|+.+|..++.+|.. ++++|.+.=....+ ..+.....+.+.+..+.. ......+.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~-V~l~D~~~~~~~~~------------~~~i~~~~~~~~~~~~~~--~~~~~~i~ 72 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLD-VVAWDPAPGAEAAL------------RANVANAWPALERQGLAP--GASPARLR 72 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCe-EEEEeCCHHHHHHH------------HHHHHHHHHHHHHcCCCh--hhHHhhce
Confidence 5799999999999999999999954 88988764222111 111111112222111100 00000111
Q ss_pred -ccchHHHhcCCCCeEEEccC-CHHHHHHHHHHHH
Q 013180 165 -ASSEEEILSGHPDFVLDCID-NIDTKVALLAACV 197 (448)
Q Consensus 165 -~~~~~~ll~~~~D~VIda~D-n~~~r~~l~~~c~ 197 (448)
..+.++.+.+ +|+|+.|+- +.+.|..+.+-..
T Consensus 73 ~~~~l~~av~~-aDlViEavpE~l~vK~~lf~~l~ 106 (321)
T PRK07066 73 FVATIEACVAD-ADFIQESAPEREALKLELHERIS 106 (321)
T ss_pred ecCCHHHHhcC-CCEEEECCcCCHHHHHHHHHHHH
Confidence 1134455665 999999985 7778876664443
No 173
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=93.88 E-value=0.12 Score=41.18 Aligned_cols=54 Identities=24% Similarity=0.216 Sum_probs=39.2
Q ss_pred cEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhC
Q 013180 86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIF 151 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~in 151 (448)
||+|||.|-+|+++|..|++.|. +++|++...--. ......=.+.+.+++++.+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~-~vtli~~~~~~~-----------~~~~~~~~~~~~~~l~~~g 54 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGK-EVTLIERSDRLL-----------PGFDPDAAKILEEYLRKRG 54 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS-EEEEEESSSSSS-----------TTSSHHHHHHHHHHHHHTT
T ss_pred CEEEECcCHHHHHHHHHHHHhCc-EEEEEeccchhh-----------hhcCHHHHHHHHHHHHHCC
Confidence 68999999999999999999995 788877543211 2233334566677777764
No 174
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=93.88 E-value=0.61 Score=45.61 Aligned_cols=90 Identities=19% Similarity=0.192 Sum_probs=54.0
Q ss_pred CcEEEEcCChHHHHHHHHHHHcCC--ceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180 85 SYVVVIGLGGVGSHAAAMLLRSGV--GRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL 162 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGV--g~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~ 162 (448)
.+|.|||+|.+|+.++..|.++|. .++.++|.+. .+.+.+++.+ .+++
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~-------------------~~~~~~~~~~-----g~~~------ 52 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSP-------------------EKRAALAEEY-----GVRA------ 52 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCH-------------------HHHHHHHHhc-----CCee------
Confidence 479999999999999999999984 3455654321 1222222211 1111
Q ss_pred CCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEc
Q 013180 163 YDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCAT 207 (448)
Q Consensus 163 ~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~ 207 (448)
. .+..+.+. ++|+||-|+-....+..+..+....+..+|+..
T Consensus 53 -~-~~~~~~~~-~advVil~v~~~~~~~v~~~l~~~~~~~vvs~~ 94 (267)
T PRK11880 53 -A-TDNQEAAQ-EADVVVLAVKPQVMEEVLSELKGQLDKLVVSIA 94 (267)
T ss_pred -c-CChHHHHh-cCCEEEEEcCHHHHHHHHHHHHhhcCCEEEEec
Confidence 1 12234444 499999999777666666554433355566654
No 175
>PRK07340 ornithine cyclodeaminase; Validated
Probab=93.84 E-value=0.31 Score=49.24 Aligned_cols=80 Identities=15% Similarity=0.144 Sum_probs=57.2
Q ss_pred HHHhhCCcEEEEcCChHHHHHHHHHHH-cCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEE
Q 013180 79 QQKVSGSYVVVIGLGGVGSHAAAMLLR-SGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHID 157 (448)
Q Consensus 79 q~kL~~~~VlVVG~GGvGs~va~~Lar-sGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~ 157 (448)
..+...++|+|+|+|+.|...++.+.. .++.++.+.|.+ ..|++.+++++.+.++ .+.
T Consensus 120 La~~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~-------------------~~~a~~~a~~~~~~~~--~~~ 178 (304)
T PRK07340 120 LAPAPPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRT-------------------AASAAAFCAHARALGP--TAE 178 (304)
T ss_pred hCCCCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCC-------------------HHHHHHHHHHHHhcCC--eeE
Confidence 334567899999999999999999975 678888885443 3577777777765432 222
Q ss_pred EEeccCCccchHHHhcCCCCeEEEccCCHH
Q 013180 158 AKVLLYDASSEEEILSGHPDFVLDCIDNID 187 (448)
Q Consensus 158 ~~~~~~~~~~~~~ll~~~~D~VIda~Dn~~ 187 (448)
.++.++.+.+ +|+||.||-+..
T Consensus 179 -------~~~~~~av~~-aDiVitaT~s~~ 200 (304)
T PRK07340 179 -------PLDGEAIPEA-VDLVVTATTSRT 200 (304)
T ss_pred -------ECCHHHHhhc-CCEEEEccCCCC
Confidence 1334555654 999999998754
No 176
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=93.77 E-value=0.94 Score=46.29 Aligned_cols=161 Identities=24% Similarity=0.272 Sum_probs=94.3
Q ss_pred HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe
Q 013180 81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV 160 (448)
Q Consensus 81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~ 160 (448)
.|.+++|.|||+|.+|+.+|+.|...|+. +..+|.-.-.. .....
T Consensus 139 el~gkTvGIiG~G~IG~~va~~l~afgm~-v~~~d~~~~~~----------------------------------~~~~~ 183 (324)
T COG0111 139 ELAGKTVGIIGLGRIGRAVAKRLKAFGMK-VIGYDPYSPRE----------------------------------RAGVD 183 (324)
T ss_pred cccCCEEEEECCCHHHHHHHHHHHhCCCe-EEEECCCCchh----------------------------------hhccc
Confidence 67899999999999999999999999976 44444311000 00000
Q ss_pred ccCCccchHHHhcCCCCeEEEccC-CHHHHHHHHHHHHH---cCCcEEEEcCCCCccCCCceEEcccccccCChhhHHHH
Q 013180 161 LLYDASSEEEILSGHPDFVLDCID-NIDTKVALLAACVR---RGLKVLCATGAGARADPTRIRVADLRESTNDPLSRAVM 236 (448)
Q Consensus 161 ~~~~~~~~~~ll~~~~D~VIda~D-n~~~r~~l~~~c~~---~~ip~I~~~g~G~k~dpt~i~i~di~~~~~dpl~~~~r 236 (448)
.....+++++++.. .|+|+..+- +.+|+-.|++.-.. .|.-+|+++ -|.-.| .+.|.+++.
T Consensus 184 ~~~~~~~Ld~lL~~-sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~a-RG~vVd-------------e~aL~~AL~ 248 (324)
T COG0111 184 GVVGVDSLDELLAE-ADILTLHLPLTPETRGLINAEELAKMKPGAILINAA-RGGVVD-------------EDALLAALD 248 (324)
T ss_pred cceecccHHHHHhh-CCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECC-Ccceec-------------HHHHHHHHH
Confidence 11223457788875 999988775 56778777753322 345566643 343222 445555443
Q ss_pred HHHhhhcCccCCe-eEEeCCCCCcc--cCCCCCCCCCCCCCCCCCCccCCcccccCCccc----chHHHHHHHHHHHHHH
Q 013180 237 HRLRKDYGIEGGI-PVVFSLEKPKA--KLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLG----SIPAIFGMVMASHVVT 309 (448)
Q Consensus 237 ~~l~~~~g~~g~i-~~v~s~e~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvlg----~~~~i~G~~~A~~vi~ 309 (448)
. |-..+. -=||+.|++.. .++. +|+ +-..|=+| ....-++-+.+..+.+
T Consensus 249 ----~--G~i~gA~lDVf~~EPl~~~~pL~~----------------~pn--V~~TPHia~~T~ea~~~~~~~~~~~i~~ 304 (324)
T COG0111 249 ----S--GKIAGAALDVFEEEPLPADSPLWD----------------LPN--VILTPHIGGSTDEAQERVAEIVAENIVR 304 (324)
T ss_pred ----c--CCcceEEecCCCCCCCCCCChhhc----------------CCC--eEECCcccccCHHHHHHHHHHHHHHHHH
Confidence 2 322222 23777775432 2221 122 22234444 2356778888899999
Q ss_pred HHHcCC
Q 013180 310 QLAERQ 315 (448)
Q Consensus 310 ~l~g~~ 315 (448)
++.|.+
T Consensus 305 ~l~g~~ 310 (324)
T COG0111 305 YLAGGP 310 (324)
T ss_pred HHcCCC
Confidence 998876
No 177
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=93.77 E-value=0.28 Score=50.18 Aligned_cols=36 Identities=31% Similarity=0.393 Sum_probs=30.9
Q ss_pred HHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEe
Q 013180 79 QQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVD 115 (448)
Q Consensus 79 q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD 115 (448)
...|++++|.|||+|..|..+|.+|..+|+ ++.+.+
T Consensus 12 ~~~L~gktIgIIG~GsmG~AlA~~L~~sG~-~Vvv~~ 47 (330)
T PRK05479 12 LSLIKGKKVAIIGYGSQGHAHALNLRDSGV-DVVVGL 47 (330)
T ss_pred hhhhCCCEEEEEeeHHHHHHHHHHHHHCCC-EEEEEE
Confidence 456889999999999999999999999998 455544
No 178
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=93.76 E-value=0.37 Score=51.82 Aligned_cols=35 Identities=29% Similarity=0.539 Sum_probs=31.4
Q ss_pred hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
+++++|+|+|+||+|..++..|+..|+ ++.++|.+
T Consensus 330 ~~~k~vlIiGaGgiG~aia~~L~~~G~-~V~i~~R~ 364 (477)
T PRK09310 330 LNNQHVAIVGAGGAAKAIATTLARAGA-ELLIFNRT 364 (477)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 567899999999999999999999998 88887654
No 179
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=93.75 E-value=0.68 Score=46.86 Aligned_cols=95 Identities=15% Similarity=0.210 Sum_probs=57.3
Q ss_pred hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180 82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL 161 (448)
Q Consensus 82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~ 161 (448)
..+.+|+|.|+|++|..+++.+...|+.++.++|... .|.+.++ ++.-..-+..
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~-------------------~~~~~a~----~lGa~~vi~~--- 221 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSP-------------------RSLSLAR----EMGADKLVNP--- 221 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCH-------------------HHHHHHH----HcCCcEEecC---
Confidence 3578999999999999999999999998888876541 1222221 1111111111
Q ss_pred cCCccchHHHh--cCCCCeEEEccCCHHHHHHHHHHHHHcCCcEE
Q 013180 162 LYDASSEEEIL--SGHPDFVLDCIDNIDTKVALLAACVRRGLKVL 204 (448)
Q Consensus 162 ~~~~~~~~~ll--~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I 204 (448)
..++..++. .+.+|+||||+....+-....+..+..|.-++
T Consensus 222 --~~~~~~~~~~~~g~~D~vid~~G~~~~~~~~~~~l~~~G~iv~ 264 (343)
T PRK09880 222 --QNDDLDHYKAEKGYFDVSFEVSGHPSSINTCLEVTRAKGVMVQ 264 (343)
T ss_pred --CcccHHHHhccCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence 111112222 12489999999987665556666666665333
No 180
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=93.74 E-value=0.4 Score=48.87 Aligned_cols=77 Identities=19% Similarity=0.256 Sum_probs=55.0
Q ss_pred hCCcEEEEcCChHHHHHHHHHH-HcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180 83 SGSYVVVIGLGGVGSHAAAMLL-RSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL 161 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~La-rsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~ 161 (448)
..++++|+|+|+.|...+..|. ..++.+++|++ |. ..|++.+++++.+..+ +++...
T Consensus 128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~----------R~---------~~~a~~~a~~~~~~~g-~~v~~~-- 185 (326)
T TIGR02992 128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWA----------RD---------SAKAEALALQLSSLLG-IDVTAA-- 185 (326)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEEC----------CC---------HHHHHHHHHHHHhhcC-ceEEEe--
Confidence 3568999999999999999997 47889999953 32 2477777777765432 334322
Q ss_pred cCCccchHHHhcCCCCeEEEccCCH
Q 013180 162 LYDASSEEEILSGHPDFVLDCIDNI 186 (448)
Q Consensus 162 ~~~~~~~~~ll~~~~D~VIda~Dn~ 186 (448)
++.++.+.+ +|+||.||.+.
T Consensus 186 ----~~~~~av~~-aDiVvtaT~s~ 205 (326)
T TIGR02992 186 ----TDPRAAMSG-ADIIVTTTPSE 205 (326)
T ss_pred ----CCHHHHhcc-CCEEEEecCCC
Confidence 334555664 99999999763
No 181
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=93.70 E-value=0.16 Score=50.40 Aligned_cols=116 Identities=21% Similarity=0.177 Sum_probs=64.9
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCceEE---EEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe
Q 013180 84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLL---LVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV 160 (448)
Q Consensus 84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~---LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~ 160 (448)
..||.|||||.+|..++..|..-+...+. +.|.+.-.. +. + .+..++-.--+.+....|++-|++-.
T Consensus 2 ~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~----~~-~-----~~~~~~~~~l~~ll~~~~DlVVE~A~ 71 (267)
T PRK13301 2 THRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLP----PA-L-----AGRVALLDGLPGLLAWRPDLVVEAAG 71 (267)
T ss_pred ceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHH----HH-h-----hccCcccCCHHHHhhcCCCEEEECCC
Confidence 35899999999999999998664432232 223321000 00 0 01112111123333455666666533
Q ss_pred ccCCccchHHHhcCCCCeEEEcc---CCHHHHHHHHHHHHHcCCcEEEEcCC
Q 013180 161 LLYDASSEEEILSGHPDFVLDCI---DNIDTKVALLAACVRRGLKVLCATGA 209 (448)
Q Consensus 161 ~~~~~~~~~~ll~~~~D~VIda~---Dn~~~r~~l~~~c~~~~ip~I~~~g~ 209 (448)
...-.+....++....|+++-.+ .+.+....|.+.|++.+..++-.+|+
T Consensus 72 ~~av~e~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~i~ipSGA 123 (267)
T PRK13301 72 QQAIAEHAEGCLTAGLDMIICSAGALADDALRARLIAAAEAGGARIRVPAGA 123 (267)
T ss_pred HHHHHHHHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHhCCCEEEEeChH
Confidence 33333445556664588887654 35567778888888877666665544
No 182
>PLN02427 UDP-apiose/xylose synthase
Probab=93.70 E-value=0.43 Score=49.22 Aligned_cols=37 Identities=24% Similarity=0.417 Sum_probs=30.0
Q ss_pred HHhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeC
Q 013180 80 QKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF 116 (448)
Q Consensus 80 ~kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~ 116 (448)
++++.++|+|.|+ |-+|+++++.|+..|--+++.+|.
T Consensus 10 ~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r 47 (386)
T PLN02427 10 KPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDV 47 (386)
T ss_pred CcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEec
Confidence 4567789999985 999999999999985346777774
No 183
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.70 E-value=0.34 Score=51.59 Aligned_cols=38 Identities=18% Similarity=0.313 Sum_probs=32.6
Q ss_pred HHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180 80 QKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ 118 (448)
Q Consensus 80 ~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~ 118 (448)
+-+.+++|+|+|.|+.|..+|..|...|. .+++.|.+.
T Consensus 10 ~~~~~~~i~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~~ 47 (458)
T PRK01710 10 KFIKNKKVAVVGIGVSNIPLIKFLVKLGA-KVTAFDKKS 47 (458)
T ss_pred hhhcCCeEEEEcccHHHHHHHHHHHHCCC-EEEEECCCC
Confidence 44567899999999999999999999996 688888553
No 184
>PLN02240 UDP-glucose 4-epimerase
Probab=93.64 E-value=0.81 Score=46.15 Aligned_cols=33 Identities=33% Similarity=0.628 Sum_probs=28.5
Q ss_pred hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEe
Q 013180 82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVD 115 (448)
Q Consensus 82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD 115 (448)
|++++|+|.|+ |++|+++++.|+..|. +++++|
T Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~ 36 (352)
T PLN02240 3 LMGRTILVTGGAGYIGSHTVLQLLLAGY-KVVVID 36 (352)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEe
Confidence 56789999986 9999999999999995 687776
No 185
>PLN02477 glutamate dehydrogenase
Probab=93.63 E-value=0.49 Score=49.90 Aligned_cols=37 Identities=30% Similarity=0.511 Sum_probs=32.8
Q ss_pred HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
.|++++|+|.|.|.||+++|+.|...|..-+.+.|.+
T Consensus 203 ~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~ 239 (410)
T PLN02477 203 SIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDIT 239 (410)
T ss_pred CccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCC
Confidence 4778999999999999999999999998766687754
No 186
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.59 E-value=0.064 Score=53.40 Aligned_cols=34 Identities=35% Similarity=0.463 Sum_probs=29.8
Q ss_pred CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCcc
Q 013180 85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQV 119 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V 119 (448)
++|.|||+|-+|+.+|.+|+++|. +++++|.+.=
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~~ 35 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQE 35 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCC-cEEEEeCCHH
Confidence 479999999999999999999995 5889887743
No 187
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=93.57 E-value=0.25 Score=53.03 Aligned_cols=122 Identities=13% Similarity=0.113 Sum_probs=69.6
Q ss_pred cEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhh-CCCceEEEEec-cC
Q 013180 86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSI-FPECHIDAKVL-LY 163 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~i-nP~v~v~~~~~-~~ 163 (448)
.|.|||+|..|+.+|.+|++.|. ++.+.|.+.-....+..... ..-+..-+...++....+ .|.+-+..... ..
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~-~V~v~drt~~~~~~l~~~~~---~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~ 76 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGF-TVSVYNRTPEKTDEFLAEHA---KGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAP 76 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHhhcc---CCCCceecCCHHHHHhhcCCCCEEEEECCCcHH
Confidence 47899999999999999999997 68888876433322221100 000000111223333332 34443433322 11
Q ss_pred CccchHHHhc--CCCCeEEEccC-CHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 013180 164 DASSEEEILS--GHPDFVLDCID-NIDTKVALLAACVRRGLKVLCATGAGA 211 (448)
Q Consensus 164 ~~~~~~~ll~--~~~D~VIda~D-n~~~r~~l~~~c~~~~ip~I~~~g~G~ 211 (448)
..+-.+.+.. .+=|+|||++. ++..-....+.+.+.++.++.+.-.|+
T Consensus 77 v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG 127 (467)
T TIGR00873 77 VDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGG 127 (467)
T ss_pred HHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCC
Confidence 1122223322 12589999986 445545556778899999999887776
No 188
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=93.55 E-value=0.41 Score=40.92 Aligned_cols=85 Identities=19% Similarity=0.307 Sum_probs=46.5
Q ss_pred cCChHHHHHHHHHHHc----CCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccCCcc
Q 013180 91 GLGGVGSHAAAMLLRS----GVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDAS 166 (448)
Q Consensus 91 G~GGvGs~va~~Lars----GVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~~~~ 166 (448)
|+|.||+.+++.|.+. ++.-..|.|.+ - +.... ...... ...+ ..
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~-~---------~~~~~------------~~~~~~-~~~~--------~~ 49 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRS-M---------LISKD------------WAASFP-DEAF--------TT 49 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESS-E---------EEETT------------HHHHHT-HSCE--------ES
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECC-c---------hhhhh------------hhhhcc-cccc--------cC
Confidence 8999999999999977 44545554544 0 11110 111111 1111 12
Q ss_pred chHHHhc-CCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEc
Q 013180 167 SEEEILS-GHPDFVLDCIDNIDTKVALLAACVRRGLKVLCAT 207 (448)
Q Consensus 167 ~~~~ll~-~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~ 207 (448)
+.++++. ..+|+||||+..-... .....+.++|+.+|.+.
T Consensus 50 ~~~~~~~~~~~dvvVE~t~~~~~~-~~~~~~L~~G~~VVt~n 90 (117)
T PF03447_consen 50 DLEELIDDPDIDVVVECTSSEAVA-EYYEKALERGKHVVTAN 90 (117)
T ss_dssp SHHHHHTHTT-SEEEE-SSCHHHH-HHHHHHHHTTCEEEES-
T ss_pred CHHHHhcCcCCCEEEECCCchHHH-HHHHHHHHCCCeEEEEC
Confidence 3455555 2499999997664444 55567778999999854
No 189
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=93.54 E-value=0.17 Score=53.19 Aligned_cols=36 Identities=31% Similarity=0.477 Sum_probs=32.5
Q ss_pred hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180 82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ 118 (448)
Q Consensus 82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~ 118 (448)
+.+++|+|+|+|.+|..+|..|...|. ++.++|.|.
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp 228 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDP 228 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCCh
Confidence 679999999999999999999999998 588888765
No 190
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=93.50 E-value=0.72 Score=46.82 Aligned_cols=35 Identities=31% Similarity=0.356 Sum_probs=29.1
Q ss_pred hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
+++++|+|.|+ |.+|+++++.|++.|. +++++|.+
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G~-~V~~~~r~ 37 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELGA-EVYGYSLD 37 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCCC-EEEEEeCC
Confidence 46789999996 8899999999999995 57776655
No 191
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=93.49 E-value=0.62 Score=50.30 Aligned_cols=122 Identities=15% Similarity=0.104 Sum_probs=71.1
Q ss_pred CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCch---HHHHHHHHHhhh-CCCceEEEEe
Q 013180 85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTP---KALCLKKHFSSI-FPECHIDAKV 160 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~---Kv~~~~~~l~~i-nP~v~v~~~~ 160 (448)
.+|.+||+|-.|+.+|.+|++.|. ++++.|.+.=....+... ...-|.. -+..+++....+ .|.+-+....
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G~-~V~V~NRt~~k~~~l~~~----~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~ 81 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVER----AKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVK 81 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCCC-eEEEECCCHHHHHHHHHh----hhhcCCcccccCCCHHHHHhcCCCCCEEEEECC
Confidence 479999999999999999999996 588876542111111100 0000211 122233333332 2444444332
Q ss_pred ccCC-ccchHHHhc--CCCCeEEEccCC-HHHHHHHHHHHHHcCCcEEEEcCCCC
Q 013180 161 LLYD-ASSEEEILS--GHPDFVLDCIDN-IDTKVALLAACVRRGLKVLCATGAGA 211 (448)
Q Consensus 161 ~~~~-~~~~~~ll~--~~~D~VIda~Dn-~~~r~~l~~~c~~~~ip~I~~~g~G~ 211 (448)
..-. .+-.+.++. .+=|+||||+.. ++.-..+.+.+.+.|+.++.+.-.|+
T Consensus 82 ~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG 136 (493)
T PLN02350 82 AGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGG 136 (493)
T ss_pred CcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCC
Confidence 2110 111122222 135899999886 66777778899999999999887766
No 192
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=93.46 E-value=0.23 Score=53.30 Aligned_cols=122 Identities=16% Similarity=0.170 Sum_probs=71.4
Q ss_pred CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCch--HHHHHHHHHhhh-CCCceEEEEec
Q 013180 85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTP--KALCLKKHFSSI-FPECHIDAKVL 161 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~--Kv~~~~~~l~~i-nP~v~v~~~~~ 161 (448)
++|.|||+|-.|+.+|.+|++.|. +++++|.+.=....+..... .-|.. -+..+++.+..+ .|.+-+.....
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~-~V~v~dr~~~~~~~l~~~~~----~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~ 76 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGF-KISVYNRTYEKTEEFVKKAK----EGNTRVKGYHTLEELVNSLKKPRKVILLIKA 76 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHhhh----hcCCcceecCCHHHHHhcCCCCCEEEEEeCC
Confidence 579999999999999999999997 68898865433222211000 00100 112233444333 34433333221
Q ss_pred -cCCccchHHHhc--CCCCeEEEccCC-HHHHHHHHHHHHHcCCcEEEEcCCCC
Q 013180 162 -LYDASSEEEILS--GHPDFVLDCIDN-IDTKVALLAACVRRGLKVLCATGAGA 211 (448)
Q Consensus 162 -~~~~~~~~~ll~--~~~D~VIda~Dn-~~~r~~l~~~c~~~~ip~I~~~g~G~ 211 (448)
....+..+.+.. .+-|+|||++.. +..-....+.+.++|+.++.++-.|+
T Consensus 77 ~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG 130 (470)
T PTZ00142 77 GEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGG 130 (470)
T ss_pred hHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCC
Confidence 111112222221 135899999875 45555666888899999999887776
No 193
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=93.44 E-value=0.1 Score=53.02 Aligned_cols=34 Identities=35% Similarity=0.614 Sum_probs=30.2
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHcCCc-eEEEEeC
Q 013180 83 SGSYVVVIGLGGVGSHAAAMLLRSGVG-RLLLVDF 116 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGVg-~i~LiD~ 116 (448)
+..||.|||+|.||+.+|..|+..|+- +|.|+|-
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~ 39 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDI 39 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 356999999999999999999999985 7999875
No 194
>PRK12827 short chain dehydrogenase; Provisional
Probab=93.42 E-value=1.5 Score=41.50 Aligned_cols=33 Identities=27% Similarity=0.565 Sum_probs=27.9
Q ss_pred hhCCcEEEEc-CChHHHHHHHHHHHcCCceEEEEe
Q 013180 82 VSGSYVVVIG-LGGVGSHAAAMLLRSGVGRLLLVD 115 (448)
Q Consensus 82 L~~~~VlVVG-~GGvGs~va~~LarsGVg~i~LiD 115 (448)
+++++|+|.| .|++|.++++.|+..|.. +.+++
T Consensus 4 ~~~~~ilItGasg~iG~~la~~l~~~g~~-v~~~~ 37 (249)
T PRK12827 4 LDSRRVLITGGSGGLGRAIAVRLAADGAD-VIVLD 37 (249)
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCCe-EEEEc
Confidence 5678899998 589999999999999974 77766
No 195
>PLN02214 cinnamoyl-CoA reductase
Probab=93.37 E-value=0.72 Score=46.91 Aligned_cols=105 Identities=15% Similarity=0.133 Sum_probs=61.2
Q ss_pred hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe
Q 013180 82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV 160 (448)
Q Consensus 82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~ 160 (448)
+++++|+|.|+ |.+|++++..|+..|. +++.++.+. ++. +... ...+....+ +++.+.
T Consensus 8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~-~V~~~~r~~---~~~--------------~~~~-~~~~~~~~~--~~~~~~ 66 (342)
T PLN02214 8 PAGKTVCVTGAGGYIASWIVKILLERGY-TVKGTVRNP---DDP--------------KNTH-LRELEGGKE--RLILCK 66 (342)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCc---hhh--------------hHHH-HHHhhCCCC--cEEEEe
Confidence 56788999998 9999999999999996 466554321 010 0000 111111112 233333
Q ss_pred ccC-CccchHHHhcCCCCeEEEccCC------------HHHHHHHHHHHHHcCC-cEEEEcC
Q 013180 161 LLY-DASSEEEILSGHPDFVLDCIDN------------IDTKVALLAACVRRGL-KVLCATG 208 (448)
Q Consensus 161 ~~~-~~~~~~~ll~~~~D~VIda~Dn------------~~~r~~l~~~c~~~~i-p~I~~~g 208 (448)
..+ +.+...+.+.+ +|+||.+... ...-..+.++|++.++ .+|..++
T Consensus 67 ~Dl~d~~~~~~~~~~-~d~Vih~A~~~~~~~~~~~~~nv~gt~~ll~aa~~~~v~r~V~~SS 127 (342)
T PLN02214 67 ADLQDYEALKAAIDG-CDGVFHTASPVTDDPEQMVEPAVNGAKFVINAAAEAKVKRVVITSS 127 (342)
T ss_pred cCcCChHHHHHHHhc-CCEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecc
Confidence 333 33445566665 8999987631 2223467788888886 4666554
No 196
>PLN02494 adenosylhomocysteinase
Probab=93.26 E-value=0.19 Score=53.66 Aligned_cols=36 Identities=31% Similarity=0.640 Sum_probs=32.3
Q ss_pred hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180 82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ 118 (448)
Q Consensus 82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~ 118 (448)
+.+++|+|+|+|.+|..+|..+...|+ ++.++|.|.
T Consensus 252 LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp 287 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDP 287 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence 578999999999999999999999998 688888664
No 197
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.25 E-value=0.36 Score=50.11 Aligned_cols=106 Identities=14% Similarity=0.133 Sum_probs=61.2
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHcCC------ceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHh--hhCCCc
Q 013180 83 SGSYVVVIGLGGVGSHAAAMLLRSGV------GRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFS--SIFPEC 154 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGV------g~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~--~inP~v 154 (448)
+..+|.|+|+|.-|+.+|..|++.|. .+++|...|..- -++.-++.+.+.=. ..-|.+
T Consensus 10 ~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~--------------~~~~~~~~in~~~~N~~ylp~~ 75 (365)
T PTZ00345 10 GPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIV--------------EGEKLSDIINTKHENVKYLPGI 75 (365)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccc--------------cchHHHHHHHhcCCCcccCCCC
Confidence 35689999999999999999999874 466775444210 02222222221100 011333
Q ss_pred eEEEEeccC--CccchHHHhcCCCCeEEEccCCHHHHHHHHHHHH----HcCCcEEEEc
Q 013180 155 HIDAKVLLY--DASSEEEILSGHPDFVLDCIDNIDTKVALLAACV----RRGLKVLCAT 207 (448)
Q Consensus 155 ~v~~~~~~~--~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~----~~~ip~I~~~ 207 (448)
++ +..+ + .+..+.+.+ .|+||-|+-+...+..+.+... ..+.++|+.+
T Consensus 76 ~L---p~ni~~t-sdl~eav~~-aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~a 129 (365)
T PTZ00345 76 KL---PDNIVAV-SDLKEAVED-ADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLT 129 (365)
T ss_pred cC---CCceEEe-cCHHHHHhc-CCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEe
Confidence 22 1111 1 233455554 9999999999888877766643 2344667643
No 198
>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]
Probab=93.24 E-value=0.32 Score=47.19 Aligned_cols=81 Identities=20% Similarity=0.286 Sum_probs=57.7
Q ss_pred hhCCcEEEE-cCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe
Q 013180 82 VSGSYVVVI-GLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV 160 (448)
Q Consensus 82 L~~~~VlVV-G~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~ 160 (448)
+++++++++ ||||+|-..++.|..-|+..+.+.|.- +| -.+...|+++||.+++..+.
T Consensus 3 ~tGKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~~----En-----------------~~a~akL~ai~p~~~v~F~~ 61 (261)
T KOG4169|consen 3 LTGKNALVTGGAGGIGLATSKALLEKGIKVLVIDDSE----EN-----------------PEAIAKLQAINPSVSVIFIK 61 (261)
T ss_pred ccCceEEEecCCchhhHHHHHHHHHcCchheeehhhh----hC-----------------HHHHHHHhccCCCceEEEEE
Confidence 457778777 799999999999999999988885532 12 22346799999999998877
Q ss_pred ccCCc-cchHHHh------cCCCCeEEEcc
Q 013180 161 LLYDA-SSEEEIL------SGHPDFVLDCI 183 (448)
Q Consensus 161 ~~~~~-~~~~~ll------~~~~D~VIda~ 183 (448)
..++. ...+..+ .+..|++|+..
T Consensus 62 ~DVt~~~~~~~~f~ki~~~fg~iDIlINgA 91 (261)
T KOG4169|consen 62 CDVTNRGDLEAAFDKILATFGTIDILINGA 91 (261)
T ss_pred eccccHHHHHHHHHHHHHHhCceEEEEccc
Confidence 66543 2222222 13578888654
No 199
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=93.23 E-value=0.17 Score=49.99 Aligned_cols=33 Identities=15% Similarity=0.235 Sum_probs=24.9
Q ss_pred CcEEEEcCChHHHHHHHHHHHcC--CceEEEEeCC
Q 013180 85 SYVVVIGLGGVGSHAAAMLLRSG--VGRLLLVDFD 117 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsG--Vg~i~LiD~D 117 (448)
.+|.|||||.+|..++..|...+ +.-+.++|.+
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~ 36 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRN 36 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCC
Confidence 37999999999999999998764 3334454544
No 200
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=93.23 E-value=0.25 Score=57.14 Aligned_cols=41 Identities=27% Similarity=0.370 Sum_probs=35.0
Q ss_pred hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCC
Q 013180 82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSS 123 (448)
Q Consensus 82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sN 123 (448)
-.+++|+|||.|..|-.+|..|++.|.. ++++|...++.-|
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~-Vtv~E~~~i~gl~ 421 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHN-VTAIDGLKITLLP 421 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCe-EEEEccccccccc
Confidence 3678999999999999999999999965 9999987655444
No 201
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=93.17 E-value=0.46 Score=48.29 Aligned_cols=33 Identities=24% Similarity=0.393 Sum_probs=29.1
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeC
Q 013180 83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDF 116 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~ 116 (448)
.+.+|+|+|+|++|..++..+...|+ ++..+|.
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~ 204 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNR 204 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEec
Confidence 57899999999999999999999998 5777765
No 202
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=93.12 E-value=0.37 Score=48.05 Aligned_cols=30 Identities=27% Similarity=0.447 Sum_probs=25.6
Q ss_pred cEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 86 YVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 86 ~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
+|+|.|+ |-+|+++++.|...| +++.+|..
T Consensus 2 ~iLVtG~~GfiGs~l~~~L~~~g--~V~~~~~~ 32 (299)
T PRK09987 2 NILLFGKTGQVGWELQRALAPLG--NLIALDVH 32 (299)
T ss_pred eEEEECCCCHHHHHHHHHhhccC--CEEEeccc
Confidence 6999987 999999999999888 57777753
No 203
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.11 E-value=0.42 Score=50.35 Aligned_cols=35 Identities=29% Similarity=0.371 Sum_probs=30.9
Q ss_pred hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
+++++|+|+|.|++|..+|..|++.|. ++.+.|.+
T Consensus 3 ~~~k~v~v~G~g~~G~s~a~~l~~~G~-~V~~~d~~ 37 (447)
T PRK02472 3 YQNKKVLVLGLAKSGYAAAKLLHKLGA-NVTVNDGK 37 (447)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence 567899999999999999999999996 58887755
No 204
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=93.10 E-value=1.2 Score=45.41 Aligned_cols=36 Identities=19% Similarity=0.150 Sum_probs=30.4
Q ss_pred HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
+++.++|+|.|+ |=+|+++++.|...|. +++.+|..
T Consensus 12 ~~~~~~vlVtGatGfiG~~lv~~L~~~g~-~V~~~d~~ 48 (348)
T PRK15181 12 VLAPKRWLITGVAGFIGSGLLEELLFLNQ-TVIGLDNF 48 (348)
T ss_pred cccCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 566799999985 9999999999999985 67777754
No 205
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.09 E-value=0.47 Score=50.12 Aligned_cols=36 Identities=28% Similarity=0.460 Sum_probs=31.1
Q ss_pred hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180 82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ 118 (448)
Q Consensus 82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~ 118 (448)
+.+++|+|+|.|+.|..+|..|+..|. ++++.|.+.
T Consensus 3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~-~v~~~d~~~ 38 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYLRKNGA-EVAAYDAEL 38 (445)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCC
Confidence 457899999999999999999999996 588888543
No 206
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.09 E-value=0.62 Score=44.17 Aligned_cols=35 Identities=29% Similarity=0.565 Sum_probs=30.2
Q ss_pred hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
|++++++|.|+ ||+|..+++.|+..|. ++.++|.+
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~-~vi~~~r~ 38 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGA-KLALIDLN 38 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 67889999998 9999999999999996 57777743
No 207
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.05 E-value=0.49 Score=44.93 Aligned_cols=35 Identities=23% Similarity=0.468 Sum_probs=30.2
Q ss_pred hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
+++++|+|.|+ |++|.++++.|+..|.. +.+++.+
T Consensus 3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~-V~~~~r~ 38 (251)
T PRK07231 3 LEGKVAIVTGASSGIGEGIARRFAAEGAR-VVVTDRN 38 (251)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCC
Confidence 67889999986 89999999999999976 8886654
No 208
>PRK12861 malic enzyme; Reviewed
Probab=93.05 E-value=0.36 Score=54.51 Aligned_cols=101 Identities=16% Similarity=0.192 Sum_probs=69.9
Q ss_pred HHhhCCcEEEEcCChHHHHHHHHHHHcCCc--eEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEE
Q 013180 80 QKVSGSYVVVIGLGGVGSHAAAMLLRSGVG--RLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHID 157 (448)
Q Consensus 80 ~kL~~~~VlVVG~GGvGs~va~~LarsGVg--~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~ 157 (448)
++|++.||++.|+|..|..+++.|...|+. +|.++|..-+=..+-. .++...|...++. -|+
T Consensus 185 k~l~d~~iv~~GAGaAg~~ia~~l~~~G~~~~~i~~~D~~Gli~~~r~-------~~l~~~k~~~a~~----~~~----- 248 (764)
T PRK12861 185 KSIKEVKVVTSGAGAAALACLDLLVDLGLPVENIWVTDIEGVVYRGRT-------TLMDPDKERFAQE----TDA----- 248 (764)
T ss_pred CChhHcEEEEECHhHHHHHHHHHHHHcCCChhhEEEEcCCCeeeCCCc-------ccCCHHHHHHHhh----cCC-----
Confidence 578899999999999999999999999996 8999997654222110 1133445554433 122
Q ss_pred EEeccCCccchHHHhcCCCCeEEEccC-CHHHHHHHHHHHHHcCCcEEEEcC
Q 013180 158 AKVLLYDASSEEEILSGHPDFVLDCID-NIDTKVALLAACVRRGLKVLCATG 208 (448)
Q Consensus 158 ~~~~~~~~~~~~~ll~~~~D~VIda~D-n~~~r~~l~~~c~~~~ip~I~~~g 208 (448)
.++.+.+.+ +|++|.++. +.=++..+-.++. .|+|.+..
T Consensus 249 --------~~L~eai~~-advliG~S~~g~ft~e~v~~Ma~---~PIIFaLs 288 (764)
T PRK12861 249 --------RTLAEVIGG-ADVFLGLSAGGVLKAEMLKAMAA---RPLILALA 288 (764)
T ss_pred --------CCHHHHHhc-CCEEEEcCCCCCCCHHHHHHhcc---CCEEEECC
Confidence 256777776 899998875 2234455666654 79999874
No 209
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=93.04 E-value=1 Score=47.03 Aligned_cols=105 Identities=21% Similarity=0.291 Sum_probs=59.5
Q ss_pred CCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180 84 GSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL 162 (448)
Q Consensus 84 ~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~ 162 (448)
..+|+|+|. |.+|+++++.|...|. ++++++.+.-.... +.. .+.+....+.+++. ...
T Consensus 60 ~~kVLVtGatG~IG~~l~~~Ll~~G~-~V~~l~R~~~~~~~-------------~~~----~~~~~~~~~~v~~v--~~D 119 (390)
T PLN02657 60 DVTVLVVGATGYIGKFVVRELVRRGY-NVVAVAREKSGIRG-------------KNG----KEDTKKELPGAEVV--FGD 119 (390)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEEechhhccc-------------cch----hhHHhhhcCCceEE--Eee
Confidence 457999986 9999999999999996 57766543210000 000 01111123444432 222
Q ss_pred C-CccchHHHhcC---CCCeEEEccCC------------HHHHHHHHHHHHHcCCc-EEEEcC
Q 013180 163 Y-DASSEEEILSG---HPDFVLDCIDN------------IDTKVALLAACVRRGLK-VLCATG 208 (448)
Q Consensus 163 ~-~~~~~~~ll~~---~~D~VIda~Dn------------~~~r~~l~~~c~~~~ip-~I~~~g 208 (448)
+ +.+.....+.+ ++|+||.|... ...-..+.+.|++.++. +|..+.
T Consensus 120 l~d~~~l~~~~~~~~~~~D~Vi~~aa~~~~~~~~~~~vn~~~~~~ll~aa~~~gv~r~V~iSS 182 (390)
T PLN02657 120 VTDADSLRKVLFSEGDPVDVVVSCLASRTGGVKDSWKIDYQATKNSLDAGREVGAKHFVLLSA 182 (390)
T ss_pred CCCHHHHHHHHHHhCCCCcEEEECCccCCCCCccchhhHHHHHHHHHHHHHHcCCCEEEEEee
Confidence 3 34445555553 48999987632 12223567888888876 555443
No 210
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=93.00 E-value=0.38 Score=54.30 Aligned_cols=101 Identities=18% Similarity=0.194 Sum_probs=69.0
Q ss_pred HHhhCCcEEEEcCChHHHHHHHHHHHcCCc--eEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEE
Q 013180 80 QKVSGSYVVVIGLGGVGSHAAAMLLRSGVG--RLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHID 157 (448)
Q Consensus 80 ~kL~~~~VlVVG~GGvGs~va~~LarsGVg--~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~ 157 (448)
++|.+.||++.|+|..|..+++.|...|+. +|.++|..-+=..+ | ..++...|...+++ -|+
T Consensus 181 ~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~i~~~--r-----~~~~~~~k~~~a~~----~~~----- 244 (752)
T PRK07232 181 KKIEDVKIVVSGAGAAAIACLNLLVALGAKKENIIVCDSKGVIYKG--R-----TEGMDEWKAAYAVD----TDA----- 244 (752)
T ss_pred CChhhcEEEEECccHHHHHHHHHHHHcCCCcccEEEEcCCCeecCC--C-----cccccHHHHHHhcc----CCC-----
Confidence 578999999999999999999999999995 99999976432211 1 12234444443332 111
Q ss_pred EEeccCCccchHHHhcCCCCeEEEccC-CHHHHHHHHHHHHHcCCcEEEEcC
Q 013180 158 AKVLLYDASSEEEILSGHPDFVLDCID-NIDTKVALLAACVRRGLKVLCATG 208 (448)
Q Consensus 158 ~~~~~~~~~~~~~ll~~~~D~VIda~D-n~~~r~~l~~~c~~~~ip~I~~~g 208 (448)
.++.+.+.+ +|++|.++. +.=++..+-.++. .|+|.+..
T Consensus 245 --------~~l~~~i~~-~~v~iG~s~~g~~~~~~v~~M~~---~piifals 284 (752)
T PRK07232 245 --------RTLAEAIEG-ADVFLGLSAAGVLTPEMVKSMAD---NPIIFALA 284 (752)
T ss_pred --------CCHHHHHcC-CCEEEEcCCCCCCCHHHHHHhcc---CCEEEecC
Confidence 356777776 899998776 2334556666663 79998874
No 211
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=93.00 E-value=0.58 Score=48.02 Aligned_cols=93 Identities=25% Similarity=0.277 Sum_probs=62.2
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccC
Q 013180 84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY 163 (448)
Q Consensus 84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~ 163 (448)
.++|+|+|+||+|...+++....| -+++.+ |++..|.+.+++.-.. . .++..
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~g-a~Via~-------------------~~~~~K~e~a~~lGAd----~---~i~~~- 218 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAMG-AEVIAI-------------------TRSEEKLELAKKLGAD----H---VINSS- 218 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcC-CeEEEE-------------------eCChHHHHHHHHhCCc----E---EEEcC-
Confidence 689999999999999999999999 556553 4456677666554322 1 12222
Q ss_pred CccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEE
Q 013180 164 DASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCA 206 (448)
Q Consensus 164 ~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~ 206 (448)
+++..+.+-. .+|+||++.- ..+-....+..+..|.-++-+
T Consensus 219 ~~~~~~~~~~-~~d~ii~tv~-~~~~~~~l~~l~~~G~~v~vG 259 (339)
T COG1064 219 DSDALEAVKE-IADAIIDTVG-PATLEPSLKALRRGGTLVLVG 259 (339)
T ss_pred CchhhHHhHh-hCcEEEECCC-hhhHHHHHHHHhcCCEEEEEC
Confidence 3333333333 3999999999 666666667777777755543
No 212
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=92.98 E-value=0.37 Score=48.85 Aligned_cols=29 Identities=28% Similarity=0.548 Sum_probs=25.9
Q ss_pred CcEEEEcCChHHHHHHHHHHHcCCceEEEE
Q 013180 85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLV 114 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGVg~i~Li 114 (448)
.||+|+|+|++||..+..|+++| ..++++
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g-~~V~~~ 29 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG-HDVTLL 29 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC-CeEEEE
Confidence 47999999999999999999999 767763
No 213
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=92.95 E-value=0.75 Score=45.44 Aligned_cols=95 Identities=17% Similarity=0.180 Sum_probs=63.1
Q ss_pred CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccCC
Q 013180 85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYD 164 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~~ 164 (448)
.+|+|+|+-|-|..++..|...|..-+..+ ..+-|.... .+ .+.. ..+...++
T Consensus 1 m~ILvlGGT~egr~la~~L~~~g~~v~~s~-----------------~t~~~~~~~-------~~-~g~~--~v~~g~l~ 53 (256)
T TIGR00715 1 MTVLLMGGTVDSRAIAKGLIAQGIEILVTV-----------------TTSEGKHLY-------PI-HQAL--TVHTGALD 53 (256)
T ss_pred CeEEEEechHHHHHHHHHHHhCCCeEEEEE-----------------ccCCccccc-------cc-cCCc--eEEECCCC
Confidence 379999997789999999999985433221 111122111 11 1111 23335566
Q ss_pred ccchHHHhc-CCCCeEEEccCCHHHHH--HHHHHHHHcCCcEEEE
Q 013180 165 ASSEEEILS-GHPDFVLDCIDNIDTKV--ALLAACVRRGLKVLCA 206 (448)
Q Consensus 165 ~~~~~~ll~-~~~D~VIda~Dn~~~r~--~l~~~c~~~~ip~I~~ 206 (448)
.+...+++. .++|+||||+..++... .+.+.|.+.|+|++--
T Consensus 54 ~~~l~~~l~~~~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~ 98 (256)
T TIGR00715 54 PQELREFLKRHSIDILVDATHPFAAQITTNATAVCKELGIPYVRF 98 (256)
T ss_pred HHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEE
Confidence 666656664 35999999999998764 6779999999999985
No 214
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=92.89 E-value=0.44 Score=48.21 Aligned_cols=97 Identities=13% Similarity=0.161 Sum_probs=56.2
Q ss_pred cEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCccc---ccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180 86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRH---AVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL 162 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq---~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~ 162 (448)
+|.|+|+|.+|+.++..|+++| .++++++.+.=....++.+ .-+.. | ....+.+++
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g-~~V~l~~r~~~~~~~i~~~~~~~~~~~---~-----------~~~~~~i~~------ 60 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKK-ISVNLWGRNHTTFESINTKRKNLKYLP---T-----------CHLPDNISV------ 60 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCC-CeEEEEecCHHHHHHHHHcCCCcccCC---C-----------CcCCCCeEE------
Confidence 6999999999999999999999 4578887653211112211 00000 0 001111111
Q ss_pred CCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHH-H--cCCcEEE
Q 013180 163 YDASSEEEILSGHPDFVLDCIDNIDTKVALLAACV-R--RGLKVLC 205 (448)
Q Consensus 163 ~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~-~--~~ip~I~ 205 (448)
+ .+..+.+.+.+|+||-|+-+...+..+.++.. . .+.++|.
T Consensus 61 -~-~~~~~~~~~~~Dliiiavks~~~~~~l~~l~~~~l~~~~~vv~ 104 (326)
T PRK14620 61 -K-SAIDEVLSDNATCIILAVPTQQLRTICQQLQDCHLKKNTPILI 104 (326)
T ss_pred -e-CCHHHHHhCCCCEEEEEeCHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 1 12223333348999999999888877766543 2 3445555
No 215
>PRK05867 short chain dehydrogenase; Provisional
Probab=92.87 E-value=0.62 Score=44.71 Aligned_cols=33 Identities=18% Similarity=0.481 Sum_probs=28.3
Q ss_pred hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEe
Q 013180 82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVD 115 (448)
Q Consensus 82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD 115 (448)
++++.++|.|+ ||+|.++++.|+..|. ++.+++
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~ 40 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGA-QVAIAA 40 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEc
Confidence 67889999998 8999999999999997 466654
No 216
>PRK09414 glutamate dehydrogenase; Provisional
Probab=92.80 E-value=1.1 Score=47.62 Aligned_cols=36 Identities=28% Similarity=0.237 Sum_probs=31.9
Q ss_pred HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeC
Q 013180 81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDF 116 (448)
Q Consensus 81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~ 116 (448)
.|++++|+|.|.|.||+++|+.|...|..=+.+.|.
T Consensus 229 ~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs 264 (445)
T PRK09414 229 SFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDS 264 (445)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcC
Confidence 478999999999999999999999999776666684
No 217
>PRK14030 glutamate dehydrogenase; Provisional
Probab=92.79 E-value=0.96 Score=48.15 Aligned_cols=37 Identities=24% Similarity=0.315 Sum_probs=32.8
Q ss_pred HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
.|++++|+|-|.|-||+++|+.|...|..=+.+-|.+
T Consensus 225 ~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~ 261 (445)
T PRK14030 225 DIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPD 261 (445)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 4789999999999999999999999998888775644
No 218
>PRK06194 hypothetical protein; Provisional
Probab=92.77 E-value=0.47 Score=46.40 Aligned_cols=36 Identities=28% Similarity=0.461 Sum_probs=29.8
Q ss_pred HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
.+++++|+|.|+ ||+|+++++.|++.|. ++.++|.+
T Consensus 3 ~~~~k~vlVtGasggIG~~la~~l~~~G~-~V~~~~r~ 39 (287)
T PRK06194 3 DFAGKVAVITGAASGFGLAFARIGAALGM-KLVLADVQ 39 (287)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 356788999975 8999999999999997 58887654
No 219
>PRK05854 short chain dehydrogenase; Provisional
Probab=92.77 E-value=0.53 Score=47.27 Aligned_cols=60 Identities=22% Similarity=0.336 Sum_probs=40.8
Q ss_pred HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEE
Q 013180 81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK 159 (448)
Q Consensus 81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~ 159 (448)
.|+++.++|.|+ +|+|.++++.|++.|. ++.+++.+ ..|.+.+.+.+.+.+|..++..+
T Consensus 11 ~l~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~-------------------~~~~~~~~~~l~~~~~~~~v~~~ 70 (313)
T PRK05854 11 DLSGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRN-------------------RAKGEAAVAAIRTAVPDAKLSLR 70 (313)
T ss_pred ccCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCC-------------------HHHHHHHHHHHHHhCCCCceEEE
Confidence 356788888875 7899999999999995 67775533 13445555556555555555544
Q ss_pred e
Q 013180 160 V 160 (448)
Q Consensus 160 ~ 160 (448)
.
T Consensus 71 ~ 71 (313)
T PRK05854 71 A 71 (313)
T ss_pred E
Confidence 3
No 220
>PLN02206 UDP-glucuronate decarboxylase
Probab=92.74 E-value=0.84 Score=48.53 Aligned_cols=35 Identities=43% Similarity=0.507 Sum_probs=28.8
Q ss_pred HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeC
Q 013180 81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF 116 (448)
Q Consensus 81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~ 116 (448)
+-++++|+|.|+ |-+|++++..|...|. +++.+|.
T Consensus 116 ~~~~~kILVTGatGfIGs~Lv~~Ll~~G~-~V~~ld~ 151 (442)
T PLN02206 116 KRKGLRVVVTGGAGFVGSHLVDRLMARGD-SVIVVDN 151 (442)
T ss_pred ccCCCEEEEECcccHHHHHHHHHHHHCcC-EEEEEeC
Confidence 345689999985 9999999999999996 4666664
No 221
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=92.74 E-value=0.67 Score=51.68 Aligned_cols=34 Identities=35% Similarity=0.507 Sum_probs=31.1
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
.+++|+|||+|..|-.+|..|++.|.. ++|+|.+
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~-V~V~E~~ 359 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVA-VTVYDRH 359 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCe-EEEEecC
Confidence 578999999999999999999999975 9999865
No 222
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=92.68 E-value=0.74 Score=46.68 Aligned_cols=32 Identities=22% Similarity=0.424 Sum_probs=28.6
Q ss_pred CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
.+|.|||+|.+|+.+|..|+.+|. +++++|.+
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~-~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGA-DVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCC-cEEEEecH
Confidence 579999999999999999999995 58888864
No 223
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=92.68 E-value=0.19 Score=46.53 Aligned_cols=91 Identities=21% Similarity=0.232 Sum_probs=57.3
Q ss_pred HHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEE
Q 013180 79 QQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDA 158 (448)
Q Consensus 79 q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~ 158 (448)
...|.+++|.|+|+|.+|..+|+.|...|. ++..+|...-... .....
T Consensus 31 ~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~~~~~-----------------------~~~~~-------- 78 (178)
T PF02826_consen 31 GRELRGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRSPKPEE-----------------------GADEF-------- 78 (178)
T ss_dssp BS-STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSCHHHH-----------------------HHHHT--------
T ss_pred ccccCCCEEEEEEEcCCcCeEeeeeecCCc-eeEEecccCChhh-----------------------hcccc--------
Confidence 457899999999999999999999999998 6777766532211 00000
Q ss_pred EeccCCccchHHHhcCCCCeEEEccC-CHHHHHHHHHHHHH---cCCcEEE
Q 013180 159 KVLLYDASSEEEILSGHPDFVLDCID-NIDTKVALLAACVR---RGLKVLC 205 (448)
Q Consensus 159 ~~~~~~~~~~~~ll~~~~D~VIda~D-n~~~r~~l~~~c~~---~~ip~I~ 205 (448)
.+...+.++++.. .|+|+.+.. +.+++..+++...+ .+.-+|+
T Consensus 79 ---~~~~~~l~ell~~-aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN 125 (178)
T PF02826_consen 79 ---GVEYVSLDELLAQ-ADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVN 125 (178)
T ss_dssp ---TEEESSHHHHHHH--SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEE
T ss_pred ---cceeeehhhhcch-hhhhhhhhccccccceeeeeeeeeccccceEEEe
Confidence 0122356677775 999998876 56677666654433 2334555
No 224
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=92.66 E-value=0.19 Score=49.99 Aligned_cols=24 Identities=33% Similarity=0.473 Sum_probs=21.2
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHc
Q 013180 83 SGSYVVVIGLGGVGSHAAAMLLRS 106 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~Lars 106 (448)
+..+|.|||||.+|..++..|...
T Consensus 5 ~~irIGIIG~G~IG~~~a~~L~~~ 28 (271)
T PRK13302 5 PELRVAIAGLGAIGKAIAQALDRG 28 (271)
T ss_pred CeeEEEEECccHHHHHHHHHHHhc
Confidence 357899999999999999999874
No 225
>PRK08291 ectoine utilization protein EutC; Validated
Probab=92.62 E-value=0.74 Score=46.97 Aligned_cols=76 Identities=16% Similarity=0.173 Sum_probs=53.3
Q ss_pred CCcEEEEcCChHHHHHHHHHHH-cCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180 84 GSYVVVIGLGGVGSHAAAMLLR-SGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL 162 (448)
Q Consensus 84 ~~~VlVVG~GGvGs~va~~Lar-sGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~ 162 (448)
.++|+|+|+|+.|...+..|.. .|+.++++++.+ ..|++.+++++++..+ +++...
T Consensus 132 ~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~-------------------~~~a~~l~~~~~~~~g-~~v~~~--- 188 (330)
T PRK08291 132 ASRAAVIGAGEQARLQLEALTLVRPIREVRVWARD-------------------AAKAEAYAADLRAELG-IPVTVA--- 188 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCC-------------------HHHHHHHHHHHhhccC-ceEEEe---
Confidence 4689999999999999999985 578999995332 2367777777654332 333322
Q ss_pred CCccchHHHhcCCCCeEEEccCCH
Q 013180 163 YDASSEEEILSGHPDFVLDCIDNI 186 (448)
Q Consensus 163 ~~~~~~~~ll~~~~D~VIda~Dn~ 186 (448)
++.++.+.+ +|+||.|+...
T Consensus 189 ---~d~~~al~~-aDiVi~aT~s~ 208 (330)
T PRK08291 189 ---RDVHEAVAG-ADIIVTTTPSE 208 (330)
T ss_pred ---CCHHHHHcc-CCEEEEeeCCC
Confidence 234556664 99999998764
No 226
>PRK06181 short chain dehydrogenase; Provisional
Probab=92.58 E-value=0.8 Score=44.06 Aligned_cols=31 Identities=32% Similarity=0.546 Sum_probs=26.6
Q ss_pred CcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeC
Q 013180 85 SYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF 116 (448)
Q Consensus 85 ~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~ 116 (448)
++|+|.|+ |++|..+++.|+..|. +++++|.
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~-~Vi~~~r 33 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGA-QLVLAAR 33 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence 57899988 9999999999999996 6877664
No 227
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=92.53 E-value=1.8 Score=41.02 Aligned_cols=99 Identities=21% Similarity=0.285 Sum_probs=63.7
Q ss_pred EEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccCCc
Q 013180 87 VVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDA 165 (448)
Q Consensus 87 VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~~~ 165 (448)
|+|+|+ |.+|+.++..|...|. ++++ +.|.. + ....+.++. +.+++. .....+.
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~-~V~~----------l~R~~----------~-~~~~~~l~~--~g~~vv-~~d~~~~ 55 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGF-SVRA----------LVRDP----------S-SDRAQQLQA--LGAEVV-EADYDDP 55 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTG-CEEE----------EESSS----------H-HHHHHHHHH--TTTEEE-ES-TT-H
T ss_pred CEEECCccHHHHHHHHHHHhCCC-CcEE----------EEecc----------c-hhhhhhhhc--ccceEe-ecccCCH
Confidence 789997 9999999999999764 4665 22221 1 111233333 244543 2233355
Q ss_pred cchHHHhcCCCCeEEEccCC-----HHHHHHHHHHHHHcCCcEEEEcCCCC
Q 013180 166 SSEEEILSGHPDFVLDCIDN-----IDTKVALLAACVRRGLKVLCATGAGA 211 (448)
Q Consensus 166 ~~~~~ll~~~~D~VIda~Dn-----~~~r~~l~~~c~~~~ip~I~~~g~G~ 211 (448)
+.+.+.+.+ .|.|+.++.. .+....+.++|.+.|++.+--+..+.
T Consensus 56 ~~l~~al~g-~d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~v~ss~~~ 105 (233)
T PF05368_consen 56 ESLVAALKG-VDAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHFVPSSFGA 105 (233)
T ss_dssp HHHHHHHTT-CSEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEEEESEESS
T ss_pred HHHHHHHcC-CceEEeecCcchhhhhhhhhhHHHhhhccccceEEEEEecc
Confidence 667777886 9999999983 23345688999999999887655554
No 228
>PRK06349 homoserine dehydrogenase; Provisional
Probab=92.53 E-value=0.7 Score=48.95 Aligned_cols=90 Identities=24% Similarity=0.345 Sum_probs=54.0
Q ss_pred CCcEEEEcCChHHHHHHHHHHHc--------C--CceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCC
Q 013180 84 GSYVVVIGLGGVGSHAAAMLLRS--------G--VGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPE 153 (448)
Q Consensus 84 ~~~VlVVG~GGvGs~va~~Lars--------G--Vg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~ 153 (448)
.-+|.|+|+|.+|+.+++.|... | +.-..++|.|.-.. +.. +. +.
T Consensus 3 ~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~----~~~-----~~----------------~~ 57 (426)
T PRK06349 3 PLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKD----RGV-----DL----------------PG 57 (426)
T ss_pred eEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhc----cCC-----CC----------------cc
Confidence 45899999999999999888543 3 23344556542111 000 00 00
Q ss_pred ceEEEEeccCCccchHHHhc-CCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEE
Q 013180 154 CHIDAKVLLYDASSEEEILS-GHPDFVLDCIDNIDTKVALLAACVRRGLKVLCA 206 (448)
Q Consensus 154 v~v~~~~~~~~~~~~~~ll~-~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~ 206 (448)
..+ . .+.++++. .+.|+|++|+........+...|.++|+.++++
T Consensus 58 ~~~-------~-~d~~~ll~d~~iDvVve~tg~~~~~~~~~~~aL~~GkhVVta 103 (426)
T PRK06349 58 ILL-------T-TDPEELVNDPDIDIVVELMGGIEPARELILKALEAGKHVVTA 103 (426)
T ss_pred cce-------e-CCHHHHhhCCCCCEEEECCCCchHHHHHHHHHHHCCCeEEEc
Confidence 000 1 23445553 247888888876666667777777888888874
No 229
>CHL00194 ycf39 Ycf39; Provisional
Probab=92.51 E-value=1.3 Score=44.31 Aligned_cols=96 Identities=17% Similarity=0.157 Sum_probs=58.8
Q ss_pred cEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccC-
Q 013180 86 YVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY- 163 (448)
Q Consensus 86 ~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~- 163 (448)
+|+|.|+ |-+|++++..|...|. +++.++.+. .+.. .+.. +.+ +.+...+
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~-~V~~l~R~~-------------------~~~~----~l~~--~~v--~~v~~Dl~ 53 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGY-QVRCLVRNL-------------------RKAS----FLKE--WGA--ELVYGDLS 53 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCC-eEEEEEcCh-------------------HHhh----hHhh--cCC--EEEECCCC
Confidence 6999995 9999999999999995 577754331 0111 1111 123 3333333
Q ss_pred CccchHHHhcCCCCeEEEccCC------------HHHHHHHHHHHHHcCC-cEEEEcCCC
Q 013180 164 DASSEEEILSGHPDFVLDCIDN------------IDTKVALLAACVRRGL-KVLCATGAG 210 (448)
Q Consensus 164 ~~~~~~~ll~~~~D~VIda~Dn------------~~~r~~l~~~c~~~~i-p~I~~~g~G 210 (448)
+++.....+.+ +|+||.+... ......+.++|++.++ .+|..++.|
T Consensus 54 d~~~l~~al~g-~d~Vi~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss~~ 112 (317)
T CHL00194 54 LPETLPPSFKG-VTAIIDASTSRPSDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSILN 112 (317)
T ss_pred CHHHHHHHHCC-CCEEEECCCCCCCCccchhhhhHHHHHHHHHHHHHcCCCEEEEecccc
Confidence 34455666776 8999987532 1222467789999886 466655543
No 230
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=92.48 E-value=0.2 Score=49.13 Aligned_cols=36 Identities=36% Similarity=0.550 Sum_probs=31.2
Q ss_pred HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeC
Q 013180 81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDF 116 (448)
Q Consensus 81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~ 116 (448)
.++.++|+|-|.|.||+++|+.|...|..-+.+-|.
T Consensus 29 ~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~ 64 (244)
T PF00208_consen 29 SLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDS 64 (244)
T ss_dssp SSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEES
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecC
Confidence 588999999999999999999999999766665443
No 231
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=92.46 E-value=0.76 Score=46.81 Aligned_cols=34 Identities=41% Similarity=0.630 Sum_probs=29.5
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeC
Q 013180 83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDF 116 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~ 116 (448)
.+.+|+|.|+|++|..++..+...|+.++..+|.
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~ 209 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDI 209 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Confidence 3689999999999999999988999887877654
No 232
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=92.46 E-value=1.8 Score=46.26 Aligned_cols=37 Identities=38% Similarity=0.469 Sum_probs=34.1
Q ss_pred HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
.|++++|+|-|.|-||+++|+.|...|..-+.+-|.+
T Consensus 234 ~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~ 270 (454)
T PTZ00079 234 SLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSD 270 (454)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 4788999999999999999999999998888898877
No 233
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=92.46 E-value=1.2 Score=44.59 Aligned_cols=35 Identities=29% Similarity=0.329 Sum_probs=30.1
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
.+.+|+|.|+|++|..++..+...|..++..+|.+
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~ 197 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPS 197 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 47899999999999999999999998877776543
No 234
>PLN02572 UDP-sulfoquinovose synthase
Probab=92.43 E-value=1.8 Score=45.95 Aligned_cols=37 Identities=30% Similarity=0.283 Sum_probs=30.7
Q ss_pred HHhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 80 QKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 80 ~kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
.++++++|+|.|+ |.+|+++++.|+..|. +++++|..
T Consensus 43 ~~~~~k~VLVTGatGfIGs~Lv~~L~~~G~-~V~~~d~~ 80 (442)
T PLN02572 43 SSSKKKKVMVIGGDGYCGWATALHLSKRGY-EVAIVDNL 80 (442)
T ss_pred ccccCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEecc
Confidence 3556678999985 9999999999999995 68888853
No 235
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=92.42 E-value=0.81 Score=45.45 Aligned_cols=33 Identities=30% Similarity=0.374 Sum_probs=27.5
Q ss_pred CCcEEEEc-CChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 84 GSYVVVIG-LGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 84 ~~~VlVVG-~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
+++|+|.| +|.+|+++++.|...|. ++++++.+
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~~g~-~V~~~~r~ 37 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQRGY-TVKATVRD 37 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHHCCC-EEEEEEcC
Confidence 57899998 59999999999999996 46665554
No 236
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.40 E-value=0.17 Score=51.29 Aligned_cols=31 Identities=39% Similarity=0.610 Sum_probs=28.2
Q ss_pred cEEEEcCChHHHHHHHHHHHcCC-ceEEEEeC
Q 013180 86 YVVVIGLGGVGSHAAAMLLRSGV-GRLLLVDF 116 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~LarsGV-g~i~LiD~ 116 (448)
||.|||+|.||+.+|..|+..|+ ++|.|+|-
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di 32 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDV 32 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 68999999999999999999997 67999874
No 237
>PLN02740 Alcohol dehydrogenase-like
Probab=92.39 E-value=1 Score=46.37 Aligned_cols=35 Identities=34% Similarity=0.548 Sum_probs=30.4
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
.+.+|+|.|+|++|..++..+...|+.++..+|.+
T Consensus 198 ~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~ 232 (381)
T PLN02740 198 AGSSVAIFGLGAVGLAVAEGARARGASKIIGVDIN 232 (381)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCC
Confidence 36789999999999999999999998888887654
No 238
>PRK05872 short chain dehydrogenase; Provisional
Probab=92.37 E-value=0.89 Score=45.12 Aligned_cols=36 Identities=39% Similarity=0.645 Sum_probs=30.3
Q ss_pred HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
.+++++|+|.|+ ||+|..+++.|+..|. ++.+++.+
T Consensus 6 ~l~gk~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~ 42 (296)
T PRK05872 6 SLAGKVVVVTGAARGIGAELARRLHARGA-KLALVDLE 42 (296)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 367889999986 8999999999999997 57776643
No 239
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=92.36 E-value=0.86 Score=53.07 Aligned_cols=97 Identities=11% Similarity=0.056 Sum_probs=57.3
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhC-CCceEEEEec
Q 013180 83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIF-PECHIDAKVL 161 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~in-P~v~v~~~~~ 161 (448)
.+++|+|||+|..|-.+|..|++.|. +++|+|... .+.-..-|.-.+.-.+| +++.+++..+. -.+++..-..
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~-~VtVfE~~~----~~GG~l~yGIP~~rlp~-~vi~~~i~~l~~~Gv~f~~n~~ 378 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGF-PVTVFEAFH----DLGGVLRYGIPEFRLPN-QLIDDVVEKIKLLGGRFVKNFV 378 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC-eEEEEeeCC----CCCceEEccCCCCcChH-HHHHHHHHHHHhhcCeEEEeEE
Confidence 48999999999999999999999997 599998642 22222222222222333 33444433332 1344433221
Q ss_pred cCCccchHHHhcCCCCeEEEccCC
Q 013180 162 LYDASSEEEILSGHPDFVLDCIDN 185 (448)
Q Consensus 162 ~~~~~~~~~ll~~~~D~VIda~Dn 185 (448)
.-..-..+++....||.||-|+..
T Consensus 379 vG~dit~~~l~~~~yDAV~LAtGA 402 (944)
T PRK12779 379 VGKTATLEDLKAAGFWKIFVGTGA 402 (944)
T ss_pred eccEEeHHHhccccCCEEEEeCCC
Confidence 111123455554359999999875
No 240
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=92.26 E-value=0.56 Score=41.70 Aligned_cols=59 Identities=20% Similarity=0.182 Sum_probs=40.9
Q ss_pred CcEEEEc-CChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180 85 SYVVVIG-LGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL 162 (448)
Q Consensus 85 ~~VlVVG-~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~ 162 (448)
+.|+|.| .+|+|..++..|++.|-.++.+++.+ .-..+.+.+.+.+.+.+ .++..+...
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~-----------------~~~~~~~~l~~~l~~~~--~~~~~~~~D 60 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRS-----------------EDSEGAQELIQELKAPG--AKITFIECD 60 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESS-----------------CHHHHHHHHHHHHHHTT--SEEEEEESE
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeec-----------------ccccccccccccccccc--ccccccccc
Confidence 3578886 78999999999999998898886655 11234555556666444 556555443
No 241
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=92.25 E-value=0.68 Score=47.28 Aligned_cols=102 Identities=22% Similarity=0.280 Sum_probs=62.6
Q ss_pred CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccCC
Q 013180 85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYD 164 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~~ 164 (448)
.+|.|+|.|+-|+.+|..|++.| ..+++...|.-....+|..-- . .+.-|.+.+ .+...-
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng-~~V~lw~r~~~~~~~i~~~~~-N----------------~~yLp~i~l--p~~l~a 61 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNG-HEVRLWGRDEEIVAEINETRE-N----------------PKYLPGILL--PPNLKA 61 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcC-CeeEEEecCHHHHHHHHhcCc-C----------------ccccCCccC--Cccccc
Confidence 58999999999999999999999 667776554322222222100 0 001122111 111111
Q ss_pred ccchHHHhcCCCCeEEEccCCHHHHHHHHHH--HHHcCCcEEEEc
Q 013180 165 ASSEEEILSGHPDFVLDCIDNIDTKVALLAA--CVRRGLKVLCAT 207 (448)
Q Consensus 165 ~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~--c~~~~ip~I~~~ 207 (448)
..+..+.+.+ +|+||-++.+...+..+.++ ....+.+++++.
T Consensus 62 t~Dl~~a~~~-ad~iv~avPs~~~r~v~~~l~~~l~~~~~iv~~s 105 (329)
T COG0240 62 TTDLAEALDG-ADIIVIAVPSQALREVLRQLKPLLLKDAIIVSAT 105 (329)
T ss_pred ccCHHHHHhc-CCEEEEECChHHHHHHHHHHhhhccCCCeEEEEe
Confidence 2345566665 99999999998888776664 345667777754
No 242
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=92.20 E-value=0.88 Score=43.75 Aligned_cols=36 Identities=31% Similarity=0.401 Sum_probs=30.2
Q ss_pred HHhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeC
Q 013180 80 QKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF 116 (448)
Q Consensus 80 ~kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~ 116 (448)
.++++++|+|.|+ |++|+++++.|+..|. ++.++|.
T Consensus 8 ~~~~~k~ilItGa~g~IG~~la~~l~~~G~-~V~~~~r 44 (259)
T PRK08213 8 FDLSGKTALVTGGSRGLGLQIAEALGEAGA-RVVLSAR 44 (259)
T ss_pred hCcCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeC
Confidence 3477899999985 9999999999999997 5777654
No 243
>PRK07478 short chain dehydrogenase; Provisional
Probab=92.19 E-value=0.82 Score=43.80 Aligned_cols=35 Identities=23% Similarity=0.560 Sum_probs=29.0
Q ss_pred HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeC
Q 013180 81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF 116 (448)
Q Consensus 81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~ 116 (448)
+++++.++|.|+ ||+|.++++.|+..|. ++.+++.
T Consensus 3 ~~~~k~~lItGas~giG~~ia~~l~~~G~-~v~~~~r 38 (254)
T PRK07478 3 RLNGKVAIITGASSGIGRAAAKLFAREGA-KVVVGAR 38 (254)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence 356788999986 7999999999999997 5777554
No 244
>PRK07680 late competence protein ComER; Validated
Probab=92.14 E-value=1.8 Score=42.68 Aligned_cols=90 Identities=22% Similarity=0.392 Sum_probs=52.9
Q ss_pred cEEEEcCChHHHHHHHHHHHcCC---ceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180 86 YVVVIGLGGVGSHAAAMLLRSGV---GRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL 162 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~LarsGV---g~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~ 162 (448)
+|.|||+|.+|+.++..|.++|. ..+.++|.+. .+++.+ .+..+.+++.
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~-------------------~~~~~~----~~~~~g~~~~----- 53 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTP-------------------AKAYHI----KERYPGIHVA----- 53 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCH-------------------HHHHHH----HHHcCCeEEE-----
Confidence 59999999999999999999985 4566654431 122222 2222323221
Q ss_pred CCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHH--cCCcEEEEc
Q 013180 163 YDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVR--RGLKVLCAT 207 (448)
Q Consensus 163 ~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~--~~ip~I~~~ 207 (448)
.+..+.+. ++|+||-|+-.......+.+.... .+..+|+.+
T Consensus 54 ---~~~~~~~~-~aDiVilav~p~~~~~vl~~l~~~l~~~~~iis~~ 96 (273)
T PRK07680 54 ---KTIEEVIS-QSDLIFICVKPLDIYPLLQKLAPHLTDEHCLVSIT 96 (273)
T ss_pred ---CCHHHHHH-hCCEEEEecCHHHHHHHHHHHHhhcCCCCEEEEEC
Confidence 12234444 499999999766655555544322 244455544
No 245
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=92.14 E-value=0.18 Score=50.73 Aligned_cols=33 Identities=30% Similarity=0.379 Sum_probs=29.3
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
..+|+|+|+|++|+.++-+|+++|. .+++++..
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGL-PVRLILRD 34 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCC-CeEEEEec
Confidence 4579999999999999999999995 68998874
No 246
>PRK06949 short chain dehydrogenase; Provisional
Probab=92.11 E-value=0.9 Score=43.43 Aligned_cols=34 Identities=26% Similarity=0.551 Sum_probs=28.9
Q ss_pred hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeC
Q 013180 82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF 116 (448)
Q Consensus 82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~ 116 (448)
+++++|+|.|+ |++|+++++.|++.|. ++.+++.
T Consensus 7 ~~~k~ilItGasg~IG~~~a~~l~~~G~-~Vi~~~r 41 (258)
T PRK06949 7 LEGKVALVTGASSGLGARFAQVLAQAGA-KVVLASR 41 (258)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence 66899999986 9999999999999997 4776544
No 247
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=92.10 E-value=0.34 Score=49.09 Aligned_cols=95 Identities=21% Similarity=0.344 Sum_probs=60.9
Q ss_pred CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccc--------cCCCcccccccCCccCchHHHHHHHHHhhhCCCceE
Q 013180 85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVS--------VSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHI 156 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~--------~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v 156 (448)
++|.|||+|-.|+-+|..++.+|+ .+++.|...-. ..+|.|+. .-|+-+-+.....+..+.|..++
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~G~-~V~l~D~~~~~~~~~~~~i~~~l~k~~-----~~g~l~~~~~~~~l~~i~~~~~~ 77 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALAGY-DVVLKDISPEALERALAYIEKNLEKLV-----EKGKLTEEEADAALARITPTTDL 77 (307)
T ss_pred cEEEEEcccchhHHHHHHHhhcCC-ceEEEeCCHHHHHHHHHHHHHHHHHHH-----hcCCCChhhHHHHHhhccccCch
Confidence 689999999999999999999664 48898877222 11222221 12444445555555555554332
Q ss_pred EEEeccCCccchHHHhcCCCCeEEEcc-CCHHHHHHHHHHHHHc
Q 013180 157 DAKVLLYDASSEEEILSGHPDFVLDCI-DNIDTKVALLAACVRR 199 (448)
Q Consensus 157 ~~~~~~~~~~~~~~ll~~~~D~VIda~-Dn~~~r~~l~~~c~~~ 199 (448)
. -+.+ +|+||.++ -|.+.|..+.+-.-.+
T Consensus 78 ~-------------~l~~-~DlVIEAv~E~levK~~vf~~l~~~ 107 (307)
T COG1250 78 A-------------ALKD-ADLVIEAVVEDLELKKQVFAELEAL 107 (307)
T ss_pred h-------------Hhcc-CCEEEEeccccHHHHHHHHHHHHhh
Confidence 2 2333 99999887 4788887666544433
No 248
>PRK05875 short chain dehydrogenase; Provisional
Probab=92.07 E-value=0.96 Score=43.92 Aligned_cols=36 Identities=25% Similarity=0.401 Sum_probs=30.4
Q ss_pred HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
.+++++|+|.|+ |++|+++++.|+..|. ++.+++.+
T Consensus 4 ~~~~k~vlItGasg~IG~~la~~l~~~G~-~V~~~~r~ 40 (276)
T PRK05875 4 SFQDRTYLVTGGGSGIGKGVAAGLVAAGA-AVMIVGRN 40 (276)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeCC
Confidence 367899999997 8999999999999997 57776543
No 249
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=92.07 E-value=0.53 Score=44.94 Aligned_cols=95 Identities=18% Similarity=0.163 Sum_probs=54.1
Q ss_pred cEEEEc-CChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCC--CceEEEEecc
Q 013180 86 YVVVIG-LGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFP--ECHIDAKVLL 162 (448)
Q Consensus 86 ~VlVVG-~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP--~v~v~~~~~~ 162 (448)
+|.||| +|.+|+.++..|++.| .++.++|.+ ..|++.+.+....... .+.+....
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G-~~V~v~~r~-------------------~~~~~~l~~~~~~~~~~~g~~~~~~~-- 59 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAG-NKIIIGSRD-------------------LEKAEEAAAKALEELGHGGSDIKVTG-- 59 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCC-CEEEEEEcC-------------------HHHHHHHHHHHHhhccccCCCceEEE--
Confidence 699997 8999999999999999 567775543 1223322222211111 01111110
Q ss_pred CCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHH-cCCcEEEE
Q 013180 163 YDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVR-RGLKVLCA 206 (448)
Q Consensus 163 ~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~-~~ip~I~~ 206 (448)
.+..+.+. ++|+||-|+-.......+.++... .+..+|+.
T Consensus 60 ---~~~~ea~~-~aDvVilavp~~~~~~~l~~l~~~l~~~vvI~~ 100 (219)
T TIGR01915 60 ---ADNAEAAK-RADVVILAVPWDHVLKTLESLRDELSGKLVISP 100 (219)
T ss_pred ---eChHHHHh-cCCEEEEECCHHHHHHHHHHHHHhccCCEEEEe
Confidence 01233444 399999999887776666555322 34445554
No 250
>PRK09186 flagellin modification protein A; Provisional
Probab=92.06 E-value=0.87 Score=43.46 Aligned_cols=33 Identities=24% Similarity=0.465 Sum_probs=27.4
Q ss_pred hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEe
Q 013180 82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVD 115 (448)
Q Consensus 82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD 115 (448)
+++++|+|.|+ ||+|.++++.|++.|.. +.+++
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~~-v~~~~ 35 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGGI-VIAAD 35 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEe
Confidence 45788999987 79999999999999964 66654
No 251
>PRK06138 short chain dehydrogenase; Provisional
Probab=92.04 E-value=0.9 Score=43.18 Aligned_cols=34 Identities=29% Similarity=0.636 Sum_probs=28.7
Q ss_pred hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeC
Q 013180 82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF 116 (448)
Q Consensus 82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~ 116 (448)
|++++++|.|+ |++|+.+++.|+..|. ++.+++.
T Consensus 3 ~~~k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r 37 (252)
T PRK06138 3 LAGRVAIVTGAGSGIGRATAKLFAREGA-RVVVADR 37 (252)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCC-eEEEecC
Confidence 57889999987 8999999999999995 5777654
No 252
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=92.03 E-value=0.39 Score=42.37 Aligned_cols=94 Identities=23% Similarity=0.245 Sum_probs=50.5
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180 83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL 162 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~ 162 (448)
...+|.|||+|-||..++..|.++|.. |.-+ .+|. ...++++.+.-+...+.
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag~~-v~~v---------~srs-------------~~sa~~a~~~~~~~~~~----- 60 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAGHE-VVGV---------YSRS-------------PASAERAAAFIGAGAIL----- 60 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTTSE-EEEE---------SSCH-------------H-HHHHHHC--TT---------
T ss_pred CccEEEEECCCHHHHHHHHHHHHCCCe-EEEE---------EeCC-------------ccccccccccccccccc-----
Confidence 456899999999999999999999964 3321 1111 22334444444443332
Q ss_pred CCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHH----cCCcEEEEcCC
Q 013180 163 YDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVR----RGLKVLCATGA 209 (448)
Q Consensus 163 ~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~----~~ip~I~~~g~ 209 (448)
+..+.+. ..|+||-|+-+-.......+.+.. .+.-+++++|+
T Consensus 61 ----~~~~~~~-~aDlv~iavpDdaI~~va~~La~~~~~~~g~iVvHtSGa 106 (127)
T PF10727_consen 61 ----DLEEILR-DADLVFIAVPDDAIAEVAEQLAQYGAWRPGQIVVHTSGA 106 (127)
T ss_dssp -----TTGGGC-C-SEEEE-S-CCHHHHHHHHHHCC--S-TT-EEEES-SS
T ss_pred ----ccccccc-cCCEEEEEechHHHHHHHHHHHHhccCCCCcEEEECCCC
Confidence 1234444 499999998665555555555533 56677887765
No 253
>PLN02852 ferredoxin-NADP+ reductase
Probab=92.02 E-value=0.9 Score=49.05 Aligned_cols=96 Identities=22% Similarity=0.199 Sum_probs=55.9
Q ss_pred hCCcEEEEcCChHHHHHHHHHHH--cCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhh--CCCceEEE
Q 013180 83 SGSYVVVIGLGGVGSHAAAMLLR--SGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSI--FPECHIDA 158 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~Lar--sGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~i--nP~v~v~~ 158 (448)
..++|+|||.|..|.++|..|++ .| .+++|+|... .+-.+.|..... |--..| .+.+.+.++ ++.+++..
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g-~~Vtv~E~~p-~pgGlvr~gvaP--~~~~~k--~v~~~~~~~~~~~~v~~~~ 98 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDG-ARVDIIERLP-TPFGLVRSGVAP--DHPETK--NVTNQFSRVATDDRVSFFG 98 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCC-CeEEEEecCC-CCcceEeeccCC--CcchhH--HHHHHHHHHHHHCCeEEEc
Confidence 35689999999999999999997 56 4799999776 355566643321 111222 222222221 13344322
Q ss_pred EeccCCc-cchHHHhcCCCCeEEEccCCH
Q 013180 159 KVLLYDA-SSEEEILSGHPDFVLDCIDNI 186 (448)
Q Consensus 159 ~~~~~~~-~~~~~ll~~~~D~VIda~Dn~ 186 (448)
- ..+.. -+.+++.. .||.||-|+...
T Consensus 99 n-v~vg~dvtl~~L~~-~yDaVIlAtGa~ 125 (491)
T PLN02852 99 N-VTLGRDVSLSELRD-LYHVVVLAYGAE 125 (491)
T ss_pred C-EEECccccHHHHhh-hCCEEEEecCCC
Confidence 1 11222 23455555 499999888753
No 254
>PRK05866 short chain dehydrogenase; Provisional
Probab=92.01 E-value=0.87 Score=45.26 Aligned_cols=34 Identities=26% Similarity=0.527 Sum_probs=28.7
Q ss_pred hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeC
Q 013180 82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF 116 (448)
Q Consensus 82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~ 116 (448)
+.+++|+|.|+ ||+|.++++.|+..|. ++.++|.
T Consensus 38 ~~~k~vlItGasggIG~~la~~La~~G~-~Vi~~~R 72 (293)
T PRK05866 38 LTGKRILLTGASSGIGEAAAEQFARRGA-TVVAVAR 72 (293)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEEC
Confidence 56788999986 9999999999999996 5777654
No 255
>PRK12829 short chain dehydrogenase; Provisional
Probab=91.98 E-value=0.7 Score=44.30 Aligned_cols=38 Identities=24% Similarity=0.406 Sum_probs=32.0
Q ss_pred HHHhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 79 QQKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 79 q~kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
...+++++|+|.|+ |++|+.+++.|+..|.. +.+++.+
T Consensus 6 ~~~~~~~~vlItGa~g~iG~~~a~~L~~~g~~-V~~~~r~ 44 (264)
T PRK12829 6 LKPLDGLRVLVTGGASGIGRAIAEAFAEAGAR-VHVCDVS 44 (264)
T ss_pred hhccCCCEEEEeCCCCcHHHHHHHHHHHCCCE-EEEEeCC
Confidence 44578899999987 89999999999999975 8887743
No 256
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=91.93 E-value=0.87 Score=45.08 Aligned_cols=96 Identities=18% Similarity=0.287 Sum_probs=57.1
Q ss_pred CcEEEEc-CChHHHHHHHHHHH-cCCceEEEEe-CCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180 85 SYVVVIG-LGGVGSHAAAMLLR-SGVGRLLLVD-FDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL 161 (448)
Q Consensus 85 ~~VlVVG-~GGvGs~va~~Lar-sGVg~i~LiD-~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~ 161 (448)
.||.|+| +|..|..++..+.. .++.=+.++| .+.-. .. .|.|. +....+ ..+..+
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~---~~-------~~~~~---------~~~~~~-~gv~~~-- 59 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSL---QG-------TDAGE---------LAGIGK-VGVPVT-- 59 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccc---cC-------CCHHH---------hcCcCc-CCceee--
Confidence 3799999 59999999999986 5666666666 32110 00 01111 111111 011111
Q ss_pred cCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcC
Q 013180 162 LYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATG 208 (448)
Q Consensus 162 ~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g 208 (448)
.+.+++ ...+|+||||+ +++.-..+...|.++|+|++.+..
T Consensus 60 ----~d~~~l-~~~~DvVIdfT-~p~~~~~~~~~al~~g~~vVigtt 100 (266)
T TIGR00036 60 ----DDLEAV-ETDPDVLIDFT-TPEGVLNHLKFALEHGVRLVVGTT 100 (266)
T ss_pred ----CCHHHh-cCCCCEEEECC-ChHHHHHHHHHHHHCCCCEEEECC
Confidence 123334 23488888888 667777778888888888887653
No 257
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=91.90 E-value=1.3 Score=42.55 Aligned_cols=33 Identities=27% Similarity=0.394 Sum_probs=27.2
Q ss_pred CCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 84 GSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 84 ~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
++.|+|.|. |++|.++++.|+..|. ++.++|.+
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g~-~vi~~~r~ 35 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEGY-RVAVADIN 35 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence 467888877 6999999999999996 67887744
No 258
>PRK12320 hypothetical protein; Provisional
Probab=91.84 E-value=1.3 Score=49.88 Aligned_cols=92 Identities=17% Similarity=0.215 Sum_probs=56.3
Q ss_pred cEEEEc-CChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccCC
Q 013180 86 YVVVIG-LGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYD 164 (448)
Q Consensus 86 ~VlVVG-~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~~ 164 (448)
+|+|.| +|-+|++++..|...|. +++.+|...-.. .++.++ .+...+.
T Consensus 2 kILVTGAaGFIGs~La~~Ll~~G~-~Vi~ldr~~~~~----------------------------~~~~ve--~v~~Dl~ 50 (699)
T PRK12320 2 QILVTDATGAVGRSVTRQLIAAGH-TVSGIAQHPHDA----------------------------LDPRVD--YVCASLR 50 (699)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCC-EEEEEeCChhhc----------------------------ccCCce--EEEccCC
Confidence 699999 69999999999999995 677777421100 012222 2222222
Q ss_pred ccchHHHhcCCCCeEEEccC---------CHHHHHHHHHHHHHcCCcEEEEcCC
Q 013180 165 ASSEEEILSGHPDFVLDCID---------NIDTKVALLAACVRRGLKVLCATGA 209 (448)
Q Consensus 165 ~~~~~~ll~~~~D~VIda~D---------n~~~r~~l~~~c~~~~ip~I~~~g~ 209 (448)
.....+.+.+ +|+||.+.. |...-..+.+.|++.++.+|..++.
T Consensus 51 d~~l~~al~~-~D~VIHLAa~~~~~~~~vNv~Gt~nLleAA~~~GvRiV~~SS~ 103 (699)
T PRK12320 51 NPVLQELAGE-ADAVIHLAPVDTSAPGGVGITGLAHVANAAARAGARLLFVSQA 103 (699)
T ss_pred CHHHHHHhcC-CCEEEEcCccCccchhhHHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 2223334443 777776653 2233345778899999988886654
No 259
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=91.84 E-value=1.9 Score=48.04 Aligned_cols=38 Identities=24% Similarity=0.390 Sum_probs=29.3
Q ss_pred HHhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 80 QKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 80 ~kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
..-++++|+|.|+ |-+|+++++.|...|=-+++.+|.+
T Consensus 311 ~~~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~ 349 (660)
T PRK08125 311 SAKRRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIG 349 (660)
T ss_pred hhhcCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCC
Confidence 3456788999985 9999999999998642367777653
No 260
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=91.81 E-value=0.66 Score=47.54 Aligned_cols=85 Identities=21% Similarity=0.313 Sum_probs=53.3
Q ss_pred HHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEE
Q 013180 80 QKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK 159 (448)
Q Consensus 80 ~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~ 159 (448)
..+.+++|.|+|+|++|+.+|+.|-..| ..|.- . +|+-. .+ +...++..+
T Consensus 158 ~~~~gK~vgilG~G~IG~~ia~rL~~Fg-~~i~y-~---------~r~~~-------~~--~~~~~~~~~---------- 207 (336)
T KOG0069|consen 158 YDLEGKTVGILGLGRIGKAIAKRLKPFG-CVILY-H---------SRTQL-------PP--EEAYEYYAE---------- 207 (336)
T ss_pred ccccCCEEEEecCcHHHHHHHHhhhhcc-ceeee-e---------cccCC-------ch--hhHHHhccc----------
Confidence 5789999999999999999999999866 33333 1 12111 11 111111111
Q ss_pred eccCCccchHHHhcCCCCeEE-EccCCHHHHHHHHH-HHHHcC
Q 013180 160 VLLYDASSEEEILSGHPDFVL-DCIDNIDTKVALLA-ACVRRG 200 (448)
Q Consensus 160 ~~~~~~~~~~~ll~~~~D~VI-da~Dn~~~r~~l~~-~c~~~~ 200 (448)
....++++.. .|+|+ .|-.+.+++..+|+ .+.+.+
T Consensus 208 -----~~d~~~~~~~-sD~ivv~~pLt~~T~~liNk~~~~~mk 244 (336)
T KOG0069|consen 208 -----FVDIEELLAN-SDVIVVNCPLTKETRHLINKKFIEKMK 244 (336)
T ss_pred -----ccCHHHHHhh-CCEEEEecCCCHHHHHHhhHHHHHhcC
Confidence 2345667664 88665 56678999999995 444433
No 261
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=91.80 E-value=1.7 Score=43.06 Aligned_cols=90 Identities=19% Similarity=0.270 Sum_probs=55.0
Q ss_pred cEEEEcCChHHHHHHHHHHHcCC---ceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180 86 YVVVIGLGGVGSHAAAMLLRSGV---GRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL 162 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~LarsGV---g~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~ 162 (448)
+|.|||+|.+|+.++..|.+.|. .++.++|.+.- .|.+.+ ....+.+++
T Consensus 3 ~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~------------------~~~~~l----~~~~~~~~~------ 54 (277)
T PRK06928 3 KIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKN------------------EHFNQL----YDKYPTVEL------ 54 (277)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcH------------------HHHHHH----HHHcCCeEE------
Confidence 69999999999999999999983 46666655320 111111 122222221
Q ss_pred CCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHH--HcCCcEEEE
Q 013180 163 YDASSEEEILSGHPDFVLDCIDNIDTKVALLAACV--RRGLKVLCA 206 (448)
Q Consensus 163 ~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~--~~~ip~I~~ 206 (448)
. .+..+.+. ++|+||-|+-....+..+.++.. ..+..+|+.
T Consensus 55 -~-~~~~e~~~-~aDvVilavpp~~~~~vl~~l~~~l~~~~~ivS~ 97 (277)
T PRK06928 55 -A-DNEAEIFT-KCDHSFICVPPLAVLPLLKDCAPVLTPDRHVVSI 97 (277)
T ss_pred -e-CCHHHHHh-hCCEEEEecCHHHHHHHHHHHHhhcCCCCEEEEE
Confidence 1 12234444 49999999987776666655532 245666764
No 262
>PRK06139 short chain dehydrogenase; Provisional
Probab=91.70 E-value=0.82 Score=46.54 Aligned_cols=35 Identities=31% Similarity=0.554 Sum_probs=29.9
Q ss_pred HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeC
Q 013180 81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF 116 (448)
Q Consensus 81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~ 116 (448)
.++++.|+|.|+ ||+|.++++.|+..|.. +.+++.
T Consensus 4 ~l~~k~vlITGAs~GIG~aia~~la~~G~~-Vvl~~R 39 (330)
T PRK06139 4 PLHGAVVVITGASSGIGQATAEAFARRGAR-LVLAAR 39 (330)
T ss_pred CCCCCEEEEcCCCCHHHHHHHHHHHHCCCE-EEEEEC
Confidence 467889999998 89999999999999974 777654
No 263
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=91.68 E-value=0.66 Score=45.97 Aligned_cols=31 Identities=32% Similarity=0.493 Sum_probs=26.5
Q ss_pred EEEEc-CChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 87 VVVIG-LGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 87 VlVVG-~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
|+|.| +|-+|+++++.|+..|...+.++|..
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g~~~v~~~~~~ 33 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNL 33 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCCCceEEEecCC
Confidence 67776 59999999999999998778888754
No 264
>PRK12939 short chain dehydrogenase; Provisional
Probab=91.65 E-value=0.99 Score=42.77 Aligned_cols=34 Identities=26% Similarity=0.466 Sum_probs=28.0
Q ss_pred HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEe
Q 013180 81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVD 115 (448)
Q Consensus 81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD 115 (448)
.+++++|+|.|+ |++|.++++.|+..|.. +.+++
T Consensus 4 ~~~~~~vlItGa~g~iG~~la~~l~~~G~~-v~~~~ 38 (250)
T PRK12939 4 NLAGKRALVTGAARGLGAAFAEALAEAGAT-VAFND 38 (250)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHcCCE-EEEEe
Confidence 356789999986 89999999999999964 55543
No 265
>PRK06125 short chain dehydrogenase; Provisional
Probab=91.62 E-value=1.3 Score=42.68 Aligned_cols=35 Identities=34% Similarity=0.561 Sum_probs=30.5
Q ss_pred hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
+++++|+|.|+ ||+|..+++.|+..|. ++.++|.+
T Consensus 5 ~~~k~vlItG~~~giG~~ia~~l~~~G~-~V~~~~r~ 40 (259)
T PRK06125 5 LAGKRVLITGASKGIGAAAAEAFAAEGC-HLHLVARD 40 (259)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCC
Confidence 67889999998 7999999999999998 78887654
No 266
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=91.61 E-value=1 Score=49.28 Aligned_cols=34 Identities=26% Similarity=0.534 Sum_probs=30.7
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180 84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ 118 (448)
Q Consensus 84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~ 118 (448)
+.+|+|+|+|.+|..+++.|...|. .+.+||.|.
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~-~vvvId~d~ 450 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGI-PLVVIETSR 450 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCC-CEEEEECCH
Confidence 5799999999999999999999996 589999883
No 267
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=91.59 E-value=0.28 Score=50.08 Aligned_cols=43 Identities=28% Similarity=0.311 Sum_probs=36.9
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcc
Q 013180 83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNR 126 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnR 126 (448)
...+|+|||.|-+|..+|..|++.|. +++++|.+.+...+-.|
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~-~V~vie~~~~~~g~s~~ 45 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGA-DVTVLEAGEAGGGAAGR 45 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCC-EEEEEecCccCCcchhc
Confidence 46789999999999999999999999 99999988886544333
No 268
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=91.57 E-value=0.97 Score=43.25 Aligned_cols=36 Identities=31% Similarity=0.581 Sum_probs=30.0
Q ss_pred HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
.+++++|+|.|+ |++|+.+++.|+..|. ++.+++.+
T Consensus 4 ~~~~~~vlItGasg~iG~~la~~l~~~G~-~v~~~~r~ 40 (262)
T PRK13394 4 NLNGKTAVVTGAASGIGKEIALELARAGA-AVAIADLN 40 (262)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEeCC
Confidence 466789999988 9999999999999997 57776543
No 269
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=91.48 E-value=0.32 Score=50.47 Aligned_cols=44 Identities=20% Similarity=0.345 Sum_probs=35.7
Q ss_pred CCcEEEEcCChHHHHHHHHHHHc-CCceEEEEeCCccccCCCccc
Q 013180 84 GSYVVVIGLGGVGSHAAAMLLRS-GVGRLLLVDFDQVSVSSLNRH 127 (448)
Q Consensus 84 ~~~VlVVG~GGvGs~va~~Lars-GVg~i~LiD~D~V~~sNLnRq 127 (448)
...|+|||+|-+|+.+|..|++. |..+++|+|.+.+-...-.|+
T Consensus 30 ~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~~~gas~~~ 74 (407)
T TIGR01373 30 TYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLGGGNTGRN 74 (407)
T ss_pred cCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccccCcccccc
Confidence 45799999999999999999985 877899999987654433333
No 270
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.47 E-value=0.25 Score=50.13 Aligned_cols=34 Identities=38% Similarity=0.598 Sum_probs=29.8
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCc-eEEEEeCC
Q 013180 84 GSYVVVIGLGGVGSHAAAMLLRSGVG-RLLLVDFD 117 (448)
Q Consensus 84 ~~~VlVVG~GGvGs~va~~LarsGVg-~i~LiD~D 117 (448)
..||.|||+|.||+.+|..|+..|.. +|.|+|-+
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~ 37 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVV 37 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 35899999999999999999999975 69998753
No 271
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=91.46 E-value=0.89 Score=46.82 Aligned_cols=103 Identities=14% Similarity=0.172 Sum_probs=58.2
Q ss_pred cEEEEcCChHHHHHHHHHHHcCC-------ceEEEEeCCccccCCCcccccccCCcc-CchHHHHHHHHHh--hhCCCce
Q 013180 86 YVVVIGLGGVGSHAAAMLLRSGV-------GRLLLVDFDQVSVSSLNRHAVATRADV-GTPKALCLKKHFS--SIFPECH 155 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~LarsGV-------g~i~LiD~D~V~~sNLnRq~l~~~~dv-G~~Kv~~~~~~l~--~inP~v~ 155 (448)
+|.|+|+|..|+.+|..|+..|. .+++|...+. ++ +..=++.+.+.-. ..-|.++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~---------------~~~~~~~~~~in~~~~n~~ylpgi~ 65 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEE---------------EIEGRNLTEIINTTHENVKYLPGIK 65 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEecc---------------ccCCHHHHHHHHhcCCCccccCCCc
Confidence 58999999999999999999873 4666654421 11 1111111111100 0012211
Q ss_pred EEEEeccCC-ccchHHHhcCCCCeEEEccCCHHHHHHHHHHH--HHcCCcEEEEc
Q 013180 156 IDAKVLLYD-ASSEEEILSGHPDFVLDCIDNIDTKVALLAAC--VRRGLKVLCAT 207 (448)
Q Consensus 156 v~~~~~~~~-~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c--~~~~ip~I~~~ 207 (448)
+ +..+. ..+..+.+.+ .|+||-|+-+...+..+.++. .+.+.++|+..
T Consensus 66 L---p~~i~at~dl~eal~~-ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~t 116 (342)
T TIGR03376 66 L---PANLVAVPDLVEAAKG-ADILVFVIPHQFLEGICKQLKGHVKPNARAISCI 116 (342)
T ss_pred C---CCCeEEECCHHHHHhc-CCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEe
Confidence 1 11110 1234566665 999999999988877666553 24566787753
No 272
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=91.45 E-value=1.3 Score=43.32 Aligned_cols=90 Identities=21% Similarity=0.302 Sum_probs=51.4
Q ss_pred cEEEEcCChHHHHHHHHHHHcCCc--eEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccC
Q 013180 86 YVVVIGLGGVGSHAAAMLLRSGVG--RLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY 163 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~LarsGVg--~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~ 163 (448)
+|.|||+|-+|+.++..|.+.|.. .+.+.| | ...|++.+.++ .+.+++ .
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~----------r---------~~~~~~~l~~~----~~~~~~--~---- 52 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSP----------R---------NAQIAARLAER----FPKVRI--A---- 52 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEEC----------C---------CHHHHHHHHHH----cCCceE--e----
Confidence 699999999999999999999842 223322 1 12233333322 232222 1
Q ss_pred CccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEc
Q 013180 164 DASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCAT 207 (448)
Q Consensus 164 ~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~ 207 (448)
.+..++... .|+||-|+-+......+.......+.-+|+..
T Consensus 53 --~~~~~~~~~-aDvVilav~p~~~~~vl~~l~~~~~~~vis~~ 93 (258)
T PRK06476 53 --KDNQAVVDR-SDVVFLAVRPQIAEEVLRALRFRPGQTVISVI 93 (258)
T ss_pred --CCHHHHHHh-CCEEEEEeCHHHHHHHHHHhccCCCCEEEEEC
Confidence 123344444 89999999865554444443223455566643
No 273
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=91.41 E-value=0.23 Score=50.38 Aligned_cols=33 Identities=48% Similarity=0.765 Sum_probs=30.7
Q ss_pred CcEEEEcCChHHHHHHHHHHHcCCc-eEEEEeCC
Q 013180 85 SYVVVIGLGGVGSHAAAMLLRSGVG-RLLLVDFD 117 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGVg-~i~LiD~D 117 (448)
.||.|+|+|.||+.+|..|+.-+++ ++.|+|-.
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~ 34 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDIN 34 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcc
Confidence 4799999999999999999999999 99999865
No 274
>PRK06223 malate dehydrogenase; Reviewed
Probab=91.39 E-value=0.28 Score=49.26 Aligned_cols=32 Identities=31% Similarity=0.574 Sum_probs=29.7
Q ss_pred CcEEEEcCChHHHHHHHHHHHcCCceEEEEeC
Q 013180 85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDF 116 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~ 116 (448)
.||.|||+|.+|+.+|..|+..|.+++.|+|-
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~ 34 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDI 34 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEEC
Confidence 58999999999999999999998669999987
No 275
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=91.38 E-value=0.9 Score=46.01 Aligned_cols=32 Identities=28% Similarity=0.331 Sum_probs=28.2
Q ss_pred CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
.+|.|+|+|..|+.++..|++.|. +++++|.+
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~-~V~~~~r~ 36 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGV-PVRLWARR 36 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCC-eEEEEeCC
Confidence 479999999999999999999995 58887765
No 276
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.36 E-value=0.28 Score=49.58 Aligned_cols=32 Identities=41% Similarity=0.637 Sum_probs=29.4
Q ss_pred cEEEEcCChHHHHHHHHHHHcCC-ceEEEEeCC
Q 013180 86 YVVVIGLGGVGSHAAAMLLRSGV-GRLLLVDFD 117 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~LarsGV-g~i~LiD~D 117 (448)
+|.|||+|.+|+.+|..|++.|+ .++.|+|.+
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~ 34 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDIN 34 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECC
Confidence 69999999999999999999996 789999964
No 277
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=91.33 E-value=1.2 Score=43.80 Aligned_cols=95 Identities=22% Similarity=0.330 Sum_probs=66.8
Q ss_pred CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccC-
Q 013180 85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY- 163 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~- 163 (448)
++|+|+|--+=|-.++..|...|. +.+ ... .+.|. +.+....+.+ ..+...+
T Consensus 1 m~ILvlgGTtE~r~la~~L~~~g~--v~~--------------sv~--t~~g~-------~~~~~~~~~~--~v~~G~lg 53 (249)
T PF02571_consen 1 MKILVLGGTTEGRKLAERLAEAGY--VIV--------------SVA--TSYGG-------ELLKPELPGL--EVRVGRLG 53 (249)
T ss_pred CEEEEEechHHHHHHHHHHHhcCC--EEE--------------EEE--hhhhH-------hhhccccCCc--eEEECCCC
Confidence 579999999999999999999997 332 011 11121 1111222333 3455667
Q ss_pred CccchHHHhc-CCCCeEEEccCCHHHHH--HHHHHHHHcCCcEEEE
Q 013180 164 DASSEEEILS-GHPDFVLDCIDNIDTKV--ALLAACVRRGLKVLCA 206 (448)
Q Consensus 164 ~~~~~~~ll~-~~~D~VIda~Dn~~~r~--~l~~~c~~~~ip~I~~ 206 (448)
+.+.+.+++. .++++|||++..++... .+.+.|.+.|+|++--
T Consensus 54 ~~~~l~~~l~~~~i~~vIDATHPfA~~is~na~~a~~~~~ipylR~ 99 (249)
T PF02571_consen 54 DEEGLAEFLRENGIDAVIDATHPFAAEISQNAIEACRELGIPYLRF 99 (249)
T ss_pred CHHHHHHHHHhCCCcEEEECCCchHHHHHHHHHHHHhhcCcceEEE
Confidence 7777777774 36999999999998765 5678999999999974
No 278
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=91.33 E-value=0.62 Score=46.09 Aligned_cols=22 Identities=27% Similarity=0.536 Sum_probs=20.2
Q ss_pred CcEEEEcCChHHHHHHHHHHHc
Q 013180 85 SYVVVIGLGGVGSHAAAMLLRS 106 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~Lars 106 (448)
.||.|+|||.+|..+++.|...
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~ 23 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHD 23 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhC
Confidence 4899999999999999999876
No 279
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=91.33 E-value=1.2 Score=44.67 Aligned_cols=111 Identities=17% Similarity=0.125 Sum_probs=66.5
Q ss_pred cEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccCCc
Q 013180 86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDA 165 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~~~ 165 (448)
+|.+||+|-+|+.++.+|++.|. +++++|.+. +. ..+. +.|...+....+-.. ..++-+.+... .
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~-~v~v~~~~~----~~--~~~~---~~g~~~~~s~~~~~~--~advVi~~v~~---~ 66 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGH-QLHVTTIGP----VA--DELL---SLGAVSVETARQVTE--ASDIIFIMVPD---T 66 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCC-eEEEEeCCH----hH--HHHH---HcCCeecCCHHHHHh--cCCEEEEeCCC---h
Confidence 59999999999999999999996 677887653 11 1111 223322222222221 22333333221 1
Q ss_pred cchHHHh-------c--CCCCeEEEccC-CHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 013180 166 SSEEEIL-------S--GHPDFVLDCID-NIDTKVALLAACVRRGLKVLCATGAGA 211 (448)
Q Consensus 166 ~~~~~ll-------~--~~~D~VIda~D-n~~~r~~l~~~c~~~~ip~I~~~g~G~ 211 (448)
....+.+ . .+-.+||||+. ++.+...+.+.+.++|..++++--.|+
T Consensus 67 ~~v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vdaPVsGg 122 (292)
T PRK15059 67 PQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDAPVSGG 122 (292)
T ss_pred HHHHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEEecCCCC
Confidence 1122221 1 11358888875 567777888999999999999765553
No 280
>PRK09291 short chain dehydrogenase; Provisional
Probab=91.30 E-value=4.3 Score=38.69 Aligned_cols=79 Identities=18% Similarity=0.193 Sum_probs=46.5
Q ss_pred CCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180 84 GSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL 162 (448)
Q Consensus 84 ~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~ 162 (448)
+++|+|.|+ ||+|..+++.|+..|.. +.+.+.+ ..+.+.+.+...+..+.+.+ +...
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G~~-v~~~~r~-------------------~~~~~~~~~~~~~~~~~~~~--~~~D 59 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKGHN-VIAGVQI-------------------APQVTALRAEAARRGLALRV--EKLD 59 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCC-------------------HHHHHHHHHHHHhcCCcceE--EEee
Confidence 457899987 89999999999999964 4444332 11233344444444443333 3222
Q ss_pred C-CccchHHHhcCCCCeEEEccC
Q 013180 163 Y-DASSEEEILSGHPDFVLDCID 184 (448)
Q Consensus 163 ~-~~~~~~~ll~~~~D~VIda~D 184 (448)
+ +.+.....+...+|+||.|..
T Consensus 60 ~~~~~~~~~~~~~~id~vi~~ag 82 (257)
T PRK09291 60 LTDAIDRAQAAEWDVDVLLNNAG 82 (257)
T ss_pred CCCHHHHHHHhcCCCCEEEECCC
Confidence 3 233344444445999998753
No 281
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=91.28 E-value=0.9 Score=45.17 Aligned_cols=32 Identities=31% Similarity=0.417 Sum_probs=28.1
Q ss_pred cEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180 86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ 118 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~ 118 (448)
+|.|||+|-+|+.++..|++.|. +++++|.+.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~-~V~~~dr~~ 32 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGY-QLHVTTIGP 32 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCC-eEEEEcCCH
Confidence 58999999999999999999995 688887653
No 282
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.16 E-value=1.2 Score=47.78 Aligned_cols=35 Identities=37% Similarity=0.558 Sum_probs=31.0
Q ss_pred hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
+++++|+|+|+|+.|..+|..|.+.|. +++..|..
T Consensus 5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~-~v~~~D~~ 39 (498)
T PRK02006 5 LQGPMVLVLGLGESGLAMARWCARHGA-RLRVADTR 39 (498)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCC-EEEEEcCC
Confidence 467899999999999999999999997 68888864
No 283
>PRK14982 acyl-ACP reductase; Provisional
Probab=91.11 E-value=0.28 Score=50.43 Aligned_cols=37 Identities=38% Similarity=0.536 Sum_probs=32.3
Q ss_pred HhhCCcEEEEcC-ChHHHHHHHHHHH-cCCceEEEEeCC
Q 013180 81 KVSGSYVVVIGL-GGVGSHAAAMLLR-SGVGRLLLVDFD 117 (448)
Q Consensus 81 kL~~~~VlVVG~-GGvGs~va~~Lar-sGVg~i~LiD~D 117 (448)
.|++++|+|+|+ |.+|+.++++|+. .|+.++.+++.+
T Consensus 152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~ 190 (340)
T PRK14982 152 DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQ 190 (340)
T ss_pred CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCC
Confidence 588999999999 8999999999985 589999996643
No 284
>PRK06128 oxidoreductase; Provisional
Probab=91.11 E-value=1.5 Score=43.52 Aligned_cols=36 Identities=22% Similarity=0.422 Sum_probs=29.7
Q ss_pred HHHhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEe
Q 013180 79 QQKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVD 115 (448)
Q Consensus 79 q~kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD 115 (448)
+.+|++++|+|.|+ ||+|..+++.|++.|.. +.+.+
T Consensus 50 ~~~l~~k~vlITGas~gIG~~~a~~l~~~G~~-V~i~~ 86 (300)
T PRK06128 50 FGRLQGRKALITGADSGIGRATAIAFAREGAD-IALNY 86 (300)
T ss_pred ccccCCCEEEEecCCCcHHHHHHHHHHHcCCE-EEEEe
Confidence 45688999999986 89999999999999974 55543
No 285
>PLN02602 lactate dehydrogenase
Probab=91.11 E-value=0.29 Score=50.53 Aligned_cols=32 Identities=38% Similarity=0.589 Sum_probs=29.4
Q ss_pred CcEEEEcCChHHHHHHHHHHHcCC-ceEEEEeC
Q 013180 85 SYVVVIGLGGVGSHAAAMLLRSGV-GRLLLVDF 116 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGV-g~i~LiD~ 116 (448)
.||.|||+|.||+.+|..|+..|+ .+|.|+|-
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi 70 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDV 70 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeC
Confidence 699999999999999999999997 57999886
No 286
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=91.08 E-value=1.1 Score=43.77 Aligned_cols=30 Identities=17% Similarity=0.314 Sum_probs=25.3
Q ss_pred cEEEEcC-ChHHHHHHHHHHHcCCceEEEEeC
Q 013180 86 YVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF 116 (448)
Q Consensus 86 ~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~ 116 (448)
+|+|+|. |.+|+.+++.|...|. ++++++.
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~-~v~~~~r 31 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGR-VVVALTS 31 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCC-EEEEeCC
Confidence 5899985 9999999999999985 5777664
No 287
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=91.04 E-value=1.5 Score=45.14 Aligned_cols=33 Identities=24% Similarity=0.352 Sum_probs=28.4
Q ss_pred hCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeC
Q 013180 83 SGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF 116 (448)
Q Consensus 83 ~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~ 116 (448)
++++|+|.|+ |-+|++++..|...|. +++.+|.
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~-~V~~v~r 53 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGH-YIIASDW 53 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCC-EEEEEEe
Confidence 4588999987 9999999999999985 6787774
No 288
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=90.96 E-value=1.4 Score=45.07 Aligned_cols=33 Identities=39% Similarity=0.658 Sum_probs=28.9
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeC
Q 013180 84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDF 116 (448)
Q Consensus 84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~ 116 (448)
+.+|+|.|+|++|..++..+...|+.++..+|.
T Consensus 192 g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~ 224 (371)
T cd08281 192 GQSVAVVGLGGVGLSALLGAVAAGASQVVAVDL 224 (371)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcC
Confidence 578999999999999999888999988877763
No 289
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=90.92 E-value=1.6 Score=47.79 Aligned_cols=35 Identities=34% Similarity=0.411 Sum_probs=31.3
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180 83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ 118 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~ 118 (448)
.+++|+|||+|..|-.+|..|++.|. +++++|...
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~-~V~v~e~~~ 170 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGH-AVTIFEAGP 170 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecCC
Confidence 57899999999999999999999998 599998553
No 290
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=90.91 E-value=1.6 Score=48.70 Aligned_cols=35 Identities=34% Similarity=0.471 Sum_probs=31.5
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180 83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ 118 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~ 118 (448)
..++|+|||.|..|-.+|..|++.|. +++++|...
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~-~Vtv~e~~~ 343 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGV-QVDVFDRHP 343 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCC-cEEEEeCCC
Confidence 57999999999999999999999998 599988654
No 291
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=90.91 E-value=2.3 Score=42.99 Aligned_cols=32 Identities=19% Similarity=0.331 Sum_probs=26.8
Q ss_pred CcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeC
Q 013180 85 SYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF 116 (448)
Q Consensus 85 ~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~ 116 (448)
++|+|.|+ |.+|+++++.|...|...+.++|.
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~ 34 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINETSDAVVVVDK 34 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEec
Confidence 47999986 889999999999999776767664
No 292
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=90.82 E-value=2.9 Score=40.31 Aligned_cols=76 Identities=16% Similarity=0.164 Sum_probs=45.5
Q ss_pred HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchH-HHHHHHHHhhhCCCceEEE
Q 013180 81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPK-ALCLKKHFSSIFPECHIDA 158 (448)
Q Consensus 81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~K-v~~~~~~l~~inP~v~v~~ 158 (448)
.|+++.|+|.|+ ||+|..+++.|+..|. ++.++|.+.-....- ++.+...|+..+. ++.+.+.+.+..+.+++-.
T Consensus 6 ~l~~k~vlItG~s~gIG~~la~~l~~~G~-~v~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~li 82 (266)
T PRK06171 6 NLQGKIIIVTGGSSGIGLAIVKELLANGA-NVVNADIHGGDGQHE--NYQFVPTDVSSAEEVNHTVAEIIEKFGRIDGLV 82 (266)
T ss_pred cCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCccccccC--ceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 467889999985 8999999999999996 577777654322211 1222334665543 2334444444444444433
Q ss_pred E
Q 013180 159 K 159 (448)
Q Consensus 159 ~ 159 (448)
+
T Consensus 83 ~ 83 (266)
T PRK06171 83 N 83 (266)
T ss_pred E
Confidence 3
No 293
>PLN02253 xanthoxin dehydrogenase
Probab=90.80 E-value=1.4 Score=43.01 Aligned_cols=35 Identities=23% Similarity=0.542 Sum_probs=28.9
Q ss_pred HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeC
Q 013180 81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF 116 (448)
Q Consensus 81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~ 116 (448)
++++++++|.|+ ||+|.++++.|+..|. ++.++|.
T Consensus 15 ~l~~k~~lItGas~gIG~~la~~l~~~G~-~v~~~~~ 50 (280)
T PLN02253 15 RLLGKVALVTGGATGIGESIVRLFHKHGA-KVCIVDL 50 (280)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeC
Confidence 466788999975 7999999999999996 5777664
No 294
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=90.79 E-value=0.88 Score=45.24 Aligned_cols=32 Identities=34% Similarity=0.477 Sum_probs=27.8
Q ss_pred CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
.+|.|||+|.+|+.++.+|++.|. ++.++|.+
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~-~v~~~d~~ 34 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGY-SLVVYDRN 34 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCC-eEEEEcCC
Confidence 479999999999999999999996 47777765
No 295
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=90.77 E-value=1.2 Score=46.29 Aligned_cols=32 Identities=34% Similarity=0.509 Sum_probs=28.7
Q ss_pred CcEEEEc-CChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 85 SYVVVIG-LGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 85 ~~VlVVG-~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
.+|+||| +|.+|+.+|..|...|. .++++|.+
T Consensus 99 ~~I~IiGG~GlmG~slA~~l~~~G~-~V~~~d~~ 131 (374)
T PRK11199 99 RPVVIVGGKGQLGRLFAKMLTLSGY-QVRILEQD 131 (374)
T ss_pred ceEEEEcCCChhhHHHHHHHHHCCC-eEEEeCCC
Confidence 6899998 99999999999999994 58888864
No 296
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=90.72 E-value=0.97 Score=46.50 Aligned_cols=99 Identities=22% Similarity=0.256 Sum_probs=57.6
Q ss_pred CcEEEEcC-ChHHHHHHHHHHHcCCceEE-EEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180 85 SYVVVIGL-GGVGSHAAAMLLRSGVGRLL-LVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL 162 (448)
Q Consensus 85 ~~VlVVG~-GGvGs~va~~LarsGVg~i~-LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~ 162 (448)
.+|.|+|+ |.+|.+++..|...-.-++. +++.+. ..|+. +.+.+|+++... ...
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~---------------sagk~--------~~~~~~~l~~~~-~~~ 56 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRE---------------SAGKP--------VSEVHPHLRGLV-DLN 56 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccch---------------hcCCC--------hHHhCccccccC-Cce
Confidence 37999999 99999999999966333444 545441 11221 111223221100 011
Q ss_pred CCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCC
Q 013180 163 YDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGA 209 (448)
Q Consensus 163 ~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~ 209 (448)
+...+.+++.. ++|+||.|+.+-..+....+ +.+.|+.+|+-++.
T Consensus 57 ~~~~~~~~~~~-~~DvVf~alP~~~s~~~~~~-~~~~G~~VIDlS~~ 101 (346)
T TIGR01850 57 LEPIDEEEIAE-DADVVFLALPHGVSAELAPE-LLAAGVKVIDLSAD 101 (346)
T ss_pred eecCCHHHhhc-CCCEEEECCCchHHHHHHHH-HHhCCCEEEeCChh
Confidence 12122334444 49999999998766655554 45689999996654
No 297
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.66 E-value=0.65 Score=46.65 Aligned_cols=34 Identities=26% Similarity=0.493 Sum_probs=30.3
Q ss_pred HhhCCcEEEEcCCh-HHHHHHHHHHHcCCceEEEEe
Q 013180 81 KVSGSYVVVIGLGG-VGSHAAAMLLRSGVGRLLLVD 115 (448)
Q Consensus 81 kL~~~~VlVVG~GG-vGs~va~~LarsGVg~i~LiD 115 (448)
.|++++|+|||.|. +|..++.+|...|. ++++++
T Consensus 155 ~l~Gk~vvVIGrs~~VG~pla~lL~~~ga-tVtv~~ 189 (286)
T PRK14175 155 DLEGKNAVVIGRSHIVGQPVSKLLLQKNA-SVTILH 189 (286)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEe
Confidence 48899999999999 99999999999984 677765
No 298
>PLN02780 ketoreductase/ oxidoreductase
Probab=90.63 E-value=1.3 Score=44.75 Aligned_cols=60 Identities=28% Similarity=0.437 Sum_probs=41.6
Q ss_pred CCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180 84 GSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL 162 (448)
Q Consensus 84 ~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~ 162 (448)
++.++|.|+ ||+|.++|+.|++.|. ++.+++.+. .|.+.+++.+.+.++..++..+...
T Consensus 53 g~~~lITGAs~GIG~alA~~La~~G~-~Vil~~R~~-------------------~~l~~~~~~l~~~~~~~~~~~~~~D 112 (320)
T PLN02780 53 GSWALVTGPTDGIGKGFAFQLARKGL-NLVLVARNP-------------------DKLKDVSDSIQSKYSKTQIKTVVVD 112 (320)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-CEEEEECCH-------------------HHHHHHHHHHHHHCCCcEEEEEEEE
Confidence 567999986 7999999999999997 588876431 2445555666665555555544433
Q ss_pred C
Q 013180 163 Y 163 (448)
Q Consensus 163 ~ 163 (448)
+
T Consensus 113 l 113 (320)
T PLN02780 113 F 113 (320)
T ss_pred C
Confidence 3
No 299
>PLN00016 RNA-binding protein; Provisional
Probab=90.63 E-value=1.7 Score=44.73 Aligned_cols=115 Identities=17% Similarity=0.175 Sum_probs=65.4
Q ss_pred HHHHhhCCcEEEE----cC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhh-C
Q 013180 78 SQQKVSGSYVVVI----GL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSI-F 151 (448)
Q Consensus 78 ~q~kL~~~~VlVV----G~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~i-n 151 (448)
.-.....++|+|+ |+ |-+|+++++.|...|. ++++++.+.-....+.-.. . .++.++ .
T Consensus 46 ~~~~~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~-~V~~l~R~~~~~~~~~~~~-----------~----~~~~~l~~ 109 (378)
T PLN00016 46 AAAAVEKKKVLIVNTNSGGHAFIGFYLAKELVKAGH-EVTLFTRGKEPSQKMKKEP-----------F----SRFSELSS 109 (378)
T ss_pred hhcccccceEEEEeccCCCceeEhHHHHHHHHHCCC-EEEEEecCCcchhhhccCc-----------h----hhhhHhhh
Confidence 3445566889999 65 8899999999999995 6788776532111110000 0 001111 1
Q ss_pred CCceEEEEeccCCccchHHHhc-CCCCeEEEccC-CHHHHHHHHHHHHHcCC-cEEEEcCCCCc
Q 013180 152 PECHIDAKVLLYDASSEEEILS-GHPDFVLDCID-NIDTKVALLAACVRRGL-KVLCATGAGAR 212 (448)
Q Consensus 152 P~v~v~~~~~~~~~~~~~~ll~-~~~D~VIda~D-n~~~r~~l~~~c~~~~i-p~I~~~g~G~k 212 (448)
+.++ .+...+ .+...++. .++|+||++.. +...-..+.++|.+.|+ .+|..++.+..
T Consensus 110 ~~v~--~v~~D~--~d~~~~~~~~~~d~Vi~~~~~~~~~~~~ll~aa~~~gvkr~V~~SS~~vy 169 (378)
T PLN00016 110 AGVK--TVWGDP--ADVKSKVAGAGFDVVYDNNGKDLDEVEPVADWAKSPGLKQFLFCSSAGVY 169 (378)
T ss_pred cCce--EEEecH--HHHHhhhccCCccEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEccHhhc
Confidence 1222 222222 12333332 24999999864 34445567889998887 57776655543
No 300
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=90.60 E-value=0.35 Score=49.26 Aligned_cols=35 Identities=43% Similarity=0.512 Sum_probs=31.5
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCcc
Q 013180 84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQV 119 (448)
Q Consensus 84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V 119 (448)
...|+|||.|-+|+.+|..|++.|. +++|+|.+..
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~g~-~V~lie~~~~ 37 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARRGL-RVLGLDRFMP 37 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCC-eEEEEecccC
Confidence 4579999999999999999999996 6999998765
No 301
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=90.60 E-value=1.6 Score=46.68 Aligned_cols=34 Identities=38% Similarity=0.604 Sum_probs=30.6
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
.+++|+|||.|..|-.+|..|++.|.. ++++|.+
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~-V~i~e~~ 173 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQ-VVVFDRH 173 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCe-EEEEecC
Confidence 568999999999999999999999975 8898865
No 302
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=90.58 E-value=0.35 Score=40.95 Aligned_cols=88 Identities=23% Similarity=0.318 Sum_probs=57.8
Q ss_pred cEEEEcCChHHHHHHHHHHHcC--CceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccC
Q 013180 86 YVVVIGLGGVGSHAAAMLLRSG--VGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY 163 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~LarsG--Vg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~ 163 (448)
||.|||+|..|..-+..+.+.+ +.-..++|.+ ..+++.+++.. . +. .+
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~-------------------~~~~~~~~~~~----~-~~--~~---- 51 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPD-------------------PERAEAFAEKY----G-IP--VY---- 51 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSS-------------------HHHHHHHHHHT----T-SE--EE----
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCC-------------------HHHHHHHHHHh----c-cc--ch----
Confidence 7999999999999999999883 3222344443 23333332222 1 11 22
Q ss_pred CccchHHHhc-CCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEE
Q 013180 164 DASSEEEILS-GHPDFVLDCIDNIDTKVALLAACVRRGLKVLCA 206 (448)
Q Consensus 164 ~~~~~~~ll~-~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~ 206 (448)
.+.++++. .++|+|+.|+.+ .....+...|.++|++++.-
T Consensus 52 --~~~~~ll~~~~~D~V~I~tp~-~~h~~~~~~~l~~g~~v~~E 92 (120)
T PF01408_consen 52 --TDLEELLADEDVDAVIIATPP-SSHAEIAKKALEAGKHVLVE 92 (120)
T ss_dssp --SSHHHHHHHTTESEEEEESSG-GGHHHHHHHHHHTTSEEEEE
T ss_pred --hHHHHHHHhhcCCEEEEecCC-cchHHHHHHHHHcCCEEEEE
Confidence 12455654 359999999988 55778888888899988874
No 303
>PRK07825 short chain dehydrogenase; Provisional
Probab=90.55 E-value=1.1 Score=43.61 Aligned_cols=35 Identities=29% Similarity=0.447 Sum_probs=29.0
Q ss_pred hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
+++++|+|.|+ ||+|..+++.|+..|.. +.+++.+
T Consensus 3 ~~~~~ilVtGasggiG~~la~~l~~~G~~-v~~~~r~ 38 (273)
T PRK07825 3 LRGKVVAITGGARGIGLATARALAALGAR-VAIGDLD 38 (273)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEECC
Confidence 45678999987 89999999999999975 7776644
No 304
>PRK09135 pteridine reductase; Provisional
Probab=90.54 E-value=1.6 Score=41.19 Aligned_cols=33 Identities=18% Similarity=0.227 Sum_probs=26.6
Q ss_pred hCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeC
Q 013180 83 SGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF 116 (448)
Q Consensus 83 ~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~ 116 (448)
.+++|+|.|+ |++|+++++.|++.|.. +.++|.
T Consensus 5 ~~~~vlItGa~g~iG~~l~~~l~~~g~~-v~~~~r 38 (249)
T PRK09135 5 SAKVALITGGARRIGAAIARTLHAAGYR-VAIHYH 38 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEcC
Confidence 4578999986 89999999999999974 555443
No 305
>PRK07035 short chain dehydrogenase; Provisional
Probab=90.53 E-value=1.7 Score=41.45 Aligned_cols=36 Identities=22% Similarity=0.489 Sum_probs=30.1
Q ss_pred HhhCCcEEEEc-CChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 81 KVSGSYVVVIG-LGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 81 kL~~~~VlVVG-~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
.++++.|+|.| .||+|.++++.|++.|. ++.++|.+
T Consensus 5 ~l~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r~ 41 (252)
T PRK07035 5 DLTGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSRK 41 (252)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 36788899997 57999999999999997 68887653
No 306
>PRK00811 spermidine synthase; Provisional
Probab=90.48 E-value=1.3 Score=44.33 Aligned_cols=35 Identities=29% Similarity=0.505 Sum_probs=27.2
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180 83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ 118 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~ 118 (448)
..++|+++|+|+ |+.+...|...++.++++||-|.
T Consensus 76 ~p~~VL~iG~G~-G~~~~~~l~~~~~~~V~~VEid~ 110 (283)
T PRK00811 76 NPKRVLIIGGGD-GGTLREVLKHPSVEKITLVEIDE 110 (283)
T ss_pred CCCEEEEEecCc-hHHHHHHHcCCCCCEEEEEeCCH
Confidence 467999999986 55555556556899999998874
No 307
>PRK13018 cell division protein FtsZ; Provisional
Probab=90.47 E-value=1.5 Score=45.88 Aligned_cols=41 Identities=22% Similarity=0.468 Sum_probs=34.1
Q ss_pred HhhCCcEEEEcCChHHHHHHHHHHHcCCc--eEEEEeCCcccc
Q 013180 81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVG--RLLLVDFDQVSV 121 (448)
Q Consensus 81 kL~~~~VlVVG~GGvGs~va~~LarsGVg--~i~LiD~D~V~~ 121 (448)
...+.+|.|||+||-|+.++.+|.+.|+. ++..++.|.-.+
T Consensus 25 ~~~~~~I~ViGvGGaG~N~v~~m~~~~~~~v~~iaiNTD~q~L 67 (378)
T PRK13018 25 DFGNPKIVVVGCGGAGNNTINRLYEIGIEGAETIAINTDAQHL 67 (378)
T ss_pred ccCCCeEEEEEeCCcHHHHHHHHHHcCCCCceEEEEECCHHHH
Confidence 35678999999999999999999999976 567778887333
No 308
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=90.47 E-value=2.3 Score=40.44 Aligned_cols=91 Identities=15% Similarity=0.230 Sum_probs=57.3
Q ss_pred CCcEEEEcCChHHHHHHHHHH--HcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180 84 GSYVVVIGLGGVGSHAAAMLL--RSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL 161 (448)
Q Consensus 84 ~~~VlVVG~GGvGs~va~~La--rsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~ 161 (448)
..+|+|+|+|.+|..++..+. ..|+.-+.++|.|. +...+. ++ ...+
T Consensus 84 ~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~---~~~~~~-------i~----------------g~~v----- 132 (213)
T PRK05472 84 TWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDP---EKIGTK-------IG----------------GIPV----- 132 (213)
T ss_pred CcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECCh---hhcCCE-------eC----------------CeEE-----
Confidence 468999999999999998743 45777777888762 111111 00 0111
Q ss_pred cCCccchHHHhc-CCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEc
Q 013180 162 LYDASSEEEILS-GHPDFVLDCIDNIDTKVALLAACVRRGLKVLCAT 207 (448)
Q Consensus 162 ~~~~~~~~~ll~-~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~ 207 (448)
...++..+++. .++|.|+.|+.+... ..+.+.|.+.|+..|...
T Consensus 133 -~~~~~l~~li~~~~iD~ViIa~P~~~~-~~i~~~l~~~Gi~~il~~ 177 (213)
T PRK05472 133 -YHIDELEEVVKENDIEIGILTVPAEAA-QEVADRLVEAGIKGILNF 177 (213)
T ss_pred -cCHHHHHHHHHHCCCCEEEEeCCchhH-HHHHHHHHHcCCCEEeec
Confidence 01123444443 248999999877554 466788889998777754
No 309
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=90.38 E-value=1.8 Score=42.88 Aligned_cols=91 Identities=13% Similarity=0.234 Sum_probs=54.1
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCC---ceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe
Q 013180 84 GSYVVVIGLGGVGSHAAAMLLRSGV---GRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV 160 (448)
Q Consensus 84 ~~~VlVVG~GGvGs~va~~LarsGV---g~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~ 160 (448)
..+|.+||+|..|+.++..|...|+ .++.++| |+. ..|.+.+++. . .+++.
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~----------r~~--------~~~~~~l~~~----~-g~~~~--- 56 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSN----------RSN--------ETRLQELHQK----Y-GVKGT--- 56 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcceEEEEC----------CCC--------HHHHHHHHHh----c-CceEe---
Confidence 4589999999999999999999983 2333322 210 1122222221 1 12221
Q ss_pred ccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHH--HcCCcEEEE
Q 013180 161 LLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACV--RRGLKVLCA 206 (448)
Q Consensus 161 ~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~--~~~ip~I~~ 206 (448)
.+..+... +.|+||-|+-+......+..+.. ..+..+|+.
T Consensus 57 -----~~~~e~~~-~aDvVilav~p~~~~~vl~~l~~~~~~~~liIs~ 98 (279)
T PRK07679 57 -----HNKKELLT-DANILFLAMKPKDVAEALIPFKEYIHNNQLIISL 98 (279)
T ss_pred -----CCHHHHHh-cCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEE
Confidence 12234444 48999999998887777766543 234556664
No 310
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=90.38 E-value=2.3 Score=45.19 Aligned_cols=34 Identities=32% Similarity=0.391 Sum_probs=28.1
Q ss_pred hCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 83 SGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 83 ~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
+..+|+|.|. |-+|+++++.|...|. +++.+|.+
T Consensus 119 ~~mkILVTGatGFIGs~Lv~~Ll~~G~-~V~~ldr~ 153 (436)
T PLN02166 119 KRLRIVVTGGAGFVGSHLVDKLIGRGD-EVIVIDNF 153 (436)
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 3468999985 8999999999999985 57777754
No 311
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=90.38 E-value=1.2 Score=45.95 Aligned_cols=46 Identities=26% Similarity=0.442 Sum_probs=35.5
Q ss_pred HHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceE--EEEeCCccccC
Q 013180 77 ESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRL--LLVDFDQVSVS 122 (448)
Q Consensus 77 ~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i--~LiD~D~V~~s 122 (448)
+.++-..+.+|.|||+||-|+.++..|.+.|+..+ ..+|.|.-.+.
T Consensus 10 ~~~~~~~~~~i~viGvGg~G~n~v~~l~~~~~~~~~~iainTD~~~L~ 57 (349)
T TIGR00065 10 ELIQPSNKAKIKVIGVGGGGNNTVNRMLEEGVEGVEFIAINTDAQHLK 57 (349)
T ss_pred hhcCcccCCeEEEEEeCCcHHHHHHHHHHcCCCceEEEEEECCHHHHh
Confidence 33444456789999999999999999999998655 45788864443
No 312
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=90.37 E-value=4.8 Score=40.10 Aligned_cols=33 Identities=30% Similarity=0.341 Sum_probs=26.5
Q ss_pred CCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 84 GSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 84 ~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
+++|+|.|+ |++|++++..|+..|. ++.+++.|
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~~G~-~V~~~~r~ 38 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLFRGY-TINATVRD 38 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCC-EEEEEEcC
Confidence 578999985 9999999999999996 46555444
No 313
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=90.37 E-value=2.2 Score=44.73 Aligned_cols=41 Identities=44% Similarity=0.523 Sum_probs=34.7
Q ss_pred cEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCccc
Q 013180 86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRH 127 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq 127 (448)
+|.|||+|-+|..+|..|+..|. +++++|.|.-....|+..
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~-~V~~~d~~~~~v~~l~~g 42 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGH-EVTGVDIDQEKVDKLNKG 42 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCC-eEEEEECCHHHHHHhhcC
Confidence 69999999999999999999996 589999876655556654
No 314
>PRK06940 short chain dehydrogenase; Provisional
Probab=90.36 E-value=1.7 Score=42.53 Aligned_cols=32 Identities=41% Similarity=0.706 Sum_probs=26.1
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
++.++|.|+||+|.++++.|+ .| .++.++|.+
T Consensus 2 ~k~~lItGa~gIG~~la~~l~-~G-~~Vv~~~r~ 33 (275)
T PRK06940 2 KEVVVVIGAGGIGQAIARRVG-AG-KKVLLADYN 33 (275)
T ss_pred CCEEEEECCChHHHHHHHHHh-CC-CEEEEEeCC
Confidence 467889999999999999996 78 467776653
No 315
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=90.31 E-value=0.44 Score=47.36 Aligned_cols=35 Identities=31% Similarity=0.409 Sum_probs=31.6
Q ss_pred cEEEEcCChHHHHHHHHHHHcCCceEEEEeCCcccc
Q 013180 86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSV 121 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~ 121 (448)
.|+|||+|-+|+.+|..|++.|. +++|+|.+.+..
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~-~V~l~e~~~~~~ 35 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGH-SVTLLERGDIGS 35 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTS-EEEEEESSSTTS
T ss_pred CEEEECcCHHHHHHHHHHHHCCC-eEEEEeeccccc
Confidence 48999999999999999999998 899999996643
No 316
>PRK05855 short chain dehydrogenase; Validated
Probab=90.29 E-value=2.7 Score=45.10 Aligned_cols=38 Identities=32% Similarity=0.536 Sum_probs=32.0
Q ss_pred HHHHhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeC
Q 013180 78 SQQKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF 116 (448)
Q Consensus 78 ~q~kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~ 116 (448)
.+..+++.+++|+|+ ||+|.++++.|+..|.. +.+++.
T Consensus 309 ~~~~~~~~~~lv~G~s~giG~~~a~~l~~~G~~-v~~~~r 347 (582)
T PRK05855 309 PRGPFSGKLVVVTGAGSGIGRETALAFAREGAE-VVASDI 347 (582)
T ss_pred ccccCCCCEEEEECCcCHHHHHHHHHHHHCCCE-EEEEeC
Confidence 345678899999986 99999999999999985 777664
No 317
>PRK07814 short chain dehydrogenase; Provisional
Probab=90.28 E-value=1.9 Score=41.76 Aligned_cols=35 Identities=26% Similarity=0.465 Sum_probs=29.7
Q ss_pred hhCCcEEEEcCC-hHHHHHHHHHHHcCCceEEEEeCC
Q 013180 82 VSGSYVVVIGLG-GVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 82 L~~~~VlVVG~G-GvGs~va~~LarsGVg~i~LiD~D 117 (448)
++++.|+|.|.+ |+|.++++.|+..|. ++.++|.+
T Consensus 8 ~~~~~vlItGasggIG~~~a~~l~~~G~-~Vi~~~r~ 43 (263)
T PRK07814 8 LDDQVAVVTGAGRGLGAAIALAFAEAGA-DVLIAART 43 (263)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence 567889999875 799999999999998 78887654
No 318
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.27 E-value=1.5 Score=46.12 Aligned_cols=35 Identities=37% Similarity=0.448 Sum_probs=30.5
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180 83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ 118 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~ 118 (448)
+.++|+|+|.|+.|..+|..|.+.|. +++.+|.+.
T Consensus 2 ~~~~i~iiGlG~~G~slA~~l~~~G~-~V~g~D~~~ 36 (418)
T PRK00683 2 GLQRVVVLGLGVTGKSIARFLAQKGV-YVIGVDKSL 36 (418)
T ss_pred CCCeEEEEEECHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence 45789999999999999999999996 688888653
No 319
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=90.26 E-value=1.4 Score=43.33 Aligned_cols=32 Identities=38% Similarity=0.520 Sum_probs=28.1
Q ss_pred EEEEcC-ChHHHHHHHHHHHcC--C-ceEEEEeCCc
Q 013180 87 VVVIGL-GGVGSHAAAMLLRSG--V-GRLLLVDFDQ 118 (448)
Q Consensus 87 VlVVG~-GGvGs~va~~LarsG--V-g~i~LiD~D~ 118 (448)
|.|||+ |.+|+.++..|+..| . .+|.|+|-+.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~ 36 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDE 36 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCc
Confidence 579999 999999999999998 4 6899998664
No 320
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.25 E-value=1.3 Score=41.84 Aligned_cols=36 Identities=25% Similarity=0.418 Sum_probs=30.2
Q ss_pred HhhCCcEEEEc-CChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 81 KVSGSYVVVIG-LGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 81 kL~~~~VlVVG-~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
.+++++|+|.| .|++|..+++.|+..|. ++.+++.+
T Consensus 4 ~~~~~~vlVtG~sg~iG~~l~~~L~~~G~-~Vi~~~r~ 40 (239)
T PRK07666 4 SLQGKNALITGAGRGIGRAVAIALAKEGV-NVGLLART 40 (239)
T ss_pred cCCCCEEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 45678899997 46999999999999998 78887754
No 321
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=90.23 E-value=0.47 Score=51.37 Aligned_cols=33 Identities=33% Similarity=0.474 Sum_probs=29.0
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
-++|.|||+|..|+.+|.+|+++|. .++++|.+
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~-~V~l~d~~ 37 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGH-QVLLYDIR 37 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCC
Confidence 4679999999999999999999995 48888765
No 322
>PRK06172 short chain dehydrogenase; Provisional
Probab=90.21 E-value=2 Score=41.06 Aligned_cols=35 Identities=31% Similarity=0.558 Sum_probs=29.2
Q ss_pred hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
|++++|+|.|+ ||+|.++++.|+..|. ++.+++.+
T Consensus 5 l~~k~ilItGas~~iG~~ia~~l~~~G~-~v~~~~r~ 40 (253)
T PRK06172 5 FSGKVALVTGGAAGIGRATALAFAREGA-KVVVADRD 40 (253)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCC
Confidence 56789999986 7999999999999996 57776543
No 323
>PRK07326 short chain dehydrogenase; Provisional
Probab=90.19 E-value=2 Score=40.48 Aligned_cols=34 Identities=24% Similarity=0.379 Sum_probs=28.0
Q ss_pred hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeC
Q 013180 82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF 116 (448)
Q Consensus 82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~ 116 (448)
+.+++|+|.|+ |++|+.+++.|+..|.. +.+++.
T Consensus 4 ~~~~~ilItGatg~iG~~la~~l~~~g~~-V~~~~r 38 (237)
T PRK07326 4 LKGKVALITGGSKGIGFAIAEALLAEGYK-VAITAR 38 (237)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCCCE-EEEeeC
Confidence 45688999986 89999999999999974 777554
No 324
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=90.17 E-value=2.6 Score=43.07 Aligned_cols=101 Identities=25% Similarity=0.338 Sum_probs=64.7
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180 83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL 162 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~ 162 (448)
..++|+|.|+|.+|-.....+-..|..+|.++|-.. +|.+.+++ +- .++......
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~-------------------~Rle~Ak~-~G-----a~~~~~~~~ 223 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVA-------------------NRLELAKK-FG-----ATVTDPSSH 223 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCH-------------------HHHHHHHH-hC-----CeEEeeccc
Confidence 478999999999999999888899999999977552 33344443 21 111111111
Q ss_pred C-CccchHHH----hc-CCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcC
Q 013180 163 Y-DASSEEEI----LS-GHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATG 208 (448)
Q Consensus 163 ~-~~~~~~~l----l~-~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g 208 (448)
. +.+...+. +. ..+|++|||+.--.+-..-...++..|.-++-.+|
T Consensus 224 ~~~~~~~~~~v~~~~g~~~~d~~~dCsG~~~~~~aai~a~r~gGt~vlvg~g 275 (354)
T KOG0024|consen 224 KSSPQELAELVEKALGKKQPDVTFDCSGAEVTIRAAIKATRSGGTVVLVGMG 275 (354)
T ss_pred cccHHHHHHHHHhhccccCCCeEEEccCchHHHHHHHHHhccCCEEEEeccC
Confidence 1 11111122 22 25999999999877777777788888884444443
No 325
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=90.16 E-value=2.3 Score=41.98 Aligned_cols=31 Identities=32% Similarity=0.395 Sum_probs=26.7
Q ss_pred cEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 86 YVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 86 ~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
+|+|.|+ |.+|+++++.|+..|. +++.+|..
T Consensus 2 ~vlItG~~G~iG~~l~~~L~~~g~-~V~~~~r~ 33 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLEQGE-EVRVLVRP 33 (328)
T ss_pred eEEEECCccchhHHHHHHHHHCCC-EEEEEEec
Confidence 6899985 9999999999999995 68888764
No 326
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=90.14 E-value=0.25 Score=55.76 Aligned_cols=100 Identities=21% Similarity=0.294 Sum_probs=57.0
Q ss_pred CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCccc---ccccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180 85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRH---AVATRADVGTPKALCLKKHFSSIFPECHIDAKVL 161 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq---~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~ 161 (448)
++|.|||+|-.|+.+|..++++|. .++|+|.+.=.+..--.. .+-..-.-|+-..+...+.+.++.+ ..
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~------~~- 385 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGV-PVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRP------TL- 385 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE------eC-
Confidence 579999999999999999999996 699999764332210000 0000001122222222222222221 11
Q ss_pred cCCccchHHHhcCCCCeEEEcc-CCHHHHHHHHHHHHHc
Q 013180 162 LYDASSEEEILSGHPDFVLDCI-DNIDTKVALLAACVRR 199 (448)
Q Consensus 162 ~~~~~~~~~ll~~~~D~VIda~-Dn~~~r~~l~~~c~~~ 199 (448)
+.+. +. ++|+||.|+ .+.+.|..+..-..+.
T Consensus 386 -----~~~~-~~-~aDlViEav~E~l~~K~~vf~~l~~~ 417 (715)
T PRK11730 386 -----DYAG-FE-RVDVVVEAVVENPKVKAAVLAEVEQK 417 (715)
T ss_pred -----CHHH-hc-CCCEEEecccCcHHHHHHHHHHHHhh
Confidence 1222 34 499999997 5788888776555443
No 327
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=90.12 E-value=1.2 Score=47.02 Aligned_cols=96 Identities=22% Similarity=0.274 Sum_probs=64.5
Q ss_pred cEEEEcCChHHH-HHHHHHHH----cCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe
Q 013180 86 YVVVIGLGGVGS-HAAAMLLR----SGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV 160 (448)
Q Consensus 86 ~VlVVG~GGvGs-~va~~Lar----sGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~ 160 (448)
||.|||+|++-+ .+...|+. .++++|.|+|-|. ...|+.- ...+++.+.+.++.++|+...
T Consensus 2 KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~--~~rl~~v------------~~~~~~~~~~~~~~~~v~~t~ 67 (419)
T cd05296 2 KLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDE--EEKLEIV------------GALAKRMVKKAGLPIKVHLTT 67 (419)
T ss_pred EEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCCh--HHHHHHH------------HHHHHHHHHhhCCCeEEEEeC
Confidence 799999999866 45555554 4789999999885 3333321 134556666777777777643
Q ss_pred ccCCccchHHHhcCCCCeEEEccC--CHHHHHHHHHHHHHcCCc
Q 013180 161 LLYDASSEEEILSGHPDFVLDCID--NIDTKVALLAACVRRGLK 202 (448)
Q Consensus 161 ~~~~~~~~~~ll~~~~D~VIda~D--n~~~r~~l~~~c~~~~ip 202 (448)
+..+.+.+ .|+||.++- ..+.+..-.++..++|+-
T Consensus 68 ------d~~~al~g-adfVi~~~~vg~~~~r~~de~i~~~~Gi~ 104 (419)
T cd05296 68 ------DRREALEG-ADFVFTQIRVGGLEARALDERIPLKHGVI 104 (419)
T ss_pred ------CHHHHhCC-CCEEEEEEeeCCcchhhhhhhhHHHcCCc
Confidence 24556666 999998874 344555555677777764
No 328
>PLN02827 Alcohol dehydrogenase-like
Probab=90.10 E-value=1.9 Score=44.44 Aligned_cols=34 Identities=38% Similarity=0.527 Sum_probs=29.4
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeC
Q 013180 83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDF 116 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~ 116 (448)
.+.+|+|.|+|++|..+++.+...|+..+..+|.
T Consensus 193 ~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~ 226 (378)
T PLN02827 193 KGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDI 226 (378)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECC
Confidence 3789999999999999999888899887877664
No 329
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=90.09 E-value=1.9 Score=41.21 Aligned_cols=35 Identities=26% Similarity=0.424 Sum_probs=30.5
Q ss_pred hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
+.+++|+|.|+ |++|..+++.|+..|. ++.++|.+
T Consensus 9 ~~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~ 44 (256)
T PRK06124 9 LAGQVALVTGSARGLGFEIARALAGAGA-HVLVNGRN 44 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCC
Confidence 67899999976 8999999999999997 68887765
No 330
>PRK06179 short chain dehydrogenase; Provisional
Probab=90.06 E-value=2.6 Score=40.70 Aligned_cols=34 Identities=24% Similarity=0.380 Sum_probs=28.1
Q ss_pred CCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180 84 GSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQ 118 (448)
Q Consensus 84 ~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~ 118 (448)
++.|+|.|+ ||+|.++++.|+..|.. +++++.+.
T Consensus 4 ~~~vlVtGasg~iG~~~a~~l~~~g~~-V~~~~r~~ 38 (270)
T PRK06179 4 SKVALVTGASSGIGRATAEKLARAGYR-VFGTSRNP 38 (270)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCE-EEEEeCCh
Confidence 457888875 89999999999999965 88887764
No 331
>PLN03139 formate dehydrogenase; Provisional
Probab=89.97 E-value=1.2 Score=46.70 Aligned_cols=81 Identities=16% Similarity=0.071 Sum_probs=53.4
Q ss_pred HHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEE
Q 013180 80 QKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK 159 (448)
Q Consensus 80 ~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~ 159 (448)
..|.+++|.|||+|.+|..+|+.|...|+. +..+|...... +.. .+.+ +..
T Consensus 195 ~~L~gktVGIVG~G~IG~~vA~~L~afG~~-V~~~d~~~~~~-------------------~~~----~~~g----~~~- 245 (386)
T PLN03139 195 YDLEGKTVGTVGAGRIGRLLLQRLKPFNCN-LLYHDRLKMDP-------------------ELE----KETG----AKF- 245 (386)
T ss_pred cCCCCCEEEEEeecHHHHHHHHHHHHCCCE-EEEECCCCcch-------------------hhH----hhcC----cee-
Confidence 368999999999999999999999999975 66666431100 000 0010 111
Q ss_pred eccCCccchHHHhcCCCCeEEEccC-CHHHHHHHHHH
Q 013180 160 VLLYDASSEEEILSGHPDFVLDCID-NIDTKVALLAA 195 (448)
Q Consensus 160 ~~~~~~~~~~~ll~~~~D~VIda~D-n~~~r~~l~~~ 195 (448)
.++.++++.. +|+|+.+.- +.+++..+++-
T Consensus 246 -----~~~l~ell~~-sDvV~l~lPlt~~T~~li~~~ 276 (386)
T PLN03139 246 -----EEDLDAMLPK-CDVVVINTPLTEKTRGMFNKE 276 (386)
T ss_pred -----cCCHHHHHhh-CCEEEEeCCCCHHHHHHhCHH
Confidence 1246677765 998887765 66777777653
No 332
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=89.96 E-value=1.8 Score=43.32 Aligned_cols=36 Identities=33% Similarity=0.500 Sum_probs=29.4
Q ss_pred HHhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeC
Q 013180 80 QKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF 116 (448)
Q Consensus 80 ~kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~ 116 (448)
..|+++.++|.|+ ||+|.++++.|+..|. ++.++|.
T Consensus 8 ~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga-~Vv~~~~ 44 (306)
T PRK07792 8 TDLSGKVAVVTGAAAGLGRAEALGLARLGA-TVVVNDV 44 (306)
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEecC
Confidence 3567889999986 7899999999999997 4666554
No 333
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=89.93 E-value=2.1 Score=42.01 Aligned_cols=85 Identities=18% Similarity=0.098 Sum_probs=53.4
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHcCC---ceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEE
Q 013180 83 SGSYVVVIGLGGVGSHAAAMLLRSGV---GRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK 159 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGV---g~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~ 159 (448)
.+.+|.|||+|-+|+.++..|.++|+ .++.+.|.+.-. .+ +..
T Consensus 2 ~~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~--------------~~-------------------~~~- 47 (260)
T PTZ00431 2 ENIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKN--------------TP-------------------FVY- 47 (260)
T ss_pred CCCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhc--------------CC-------------------eEE-
Confidence 35689999999999999999999984 236665543210 00 011
Q ss_pred eccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHH-cCCcEEEEc
Q 013180 160 VLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVR-RGLKVLCAT 207 (448)
Q Consensus 160 ~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~-~~ip~I~~~ 207 (448)
. .+..+... ++|+||-|+.....+..+.+.... ....+|+..
T Consensus 48 ----~-~~~~~~~~-~~D~Vilavkp~~~~~vl~~i~~~l~~~~iIS~~ 90 (260)
T PTZ00431 48 ----L-QSNEELAK-TCDIIVLAVKPDLAGKVLLEIKPYLGSKLLISIC 90 (260)
T ss_pred ----e-CChHHHHH-hCCEEEEEeCHHHHHHHHHHHHhhccCCEEEEEe
Confidence 1 11223344 499999999888887777765432 234555533
No 334
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=89.92 E-value=2.3 Score=45.14 Aligned_cols=35 Identities=26% Similarity=0.325 Sum_probs=31.3
Q ss_pred hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
-..++|+|||.|..|..+|..|++.|. +++|+|..
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~~G~-~V~vie~~ 165 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAKAGH-SVTVFEAL 165 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCC-cEEEEecC
Confidence 356799999999999999999999996 69999975
No 335
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=89.92 E-value=1.6 Score=44.75 Aligned_cols=102 Identities=18% Similarity=0.163 Sum_probs=57.0
Q ss_pred CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccCC
Q 013180 85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYD 164 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~~ 164 (448)
.+|.|+|+|..|+.++..|++.| +++++..+.-....++..-. .....+. . ..+.+. +.. +
T Consensus 8 mkI~IiGaGa~G~alA~~La~~g--~v~l~~~~~~~~~~i~~~~~-~~~~l~~--------~-~~l~~~--i~~-----t 68 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARRG--PTLQWVRSAETADDINDNHR-NSRYLGN--------D-VVLSDT--LRA-----T 68 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC--CEEEEeCCHHHHHHHHhcCC-CcccCCC--------C-cccCCC--eEE-----E
Confidence 67999999999999999999998 46665444322222221100 0001110 0 001111 111 1
Q ss_pred ccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHH--cCCcEEEEc
Q 013180 165 ASSEEEILSGHPDFVLDCIDNIDTKVALLAACVR--RGLKVLCAT 207 (448)
Q Consensus 165 ~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~--~~ip~I~~~ 207 (448)
.+..+.+.+ .|+||-|+-+...+..+.++... .+.++|+..
T Consensus 69 -~d~~~a~~~-aDlVilavps~~~~~vl~~i~~~l~~~~~vIsl~ 111 (341)
T PRK12439 69 -TDFAEAANC-ADVVVMGVPSHGFRGVLTELAKELRPWVPVVSLV 111 (341)
T ss_pred -CCHHHHHhc-CCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEEE
Confidence 122334444 89999999988888777666543 344566643
No 336
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=89.91 E-value=0.43 Score=49.54 Aligned_cols=33 Identities=30% Similarity=0.409 Sum_probs=30.6
Q ss_pred CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180 85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ 118 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~ 118 (448)
++|+|||.|-+|+.+|..|++.|. +++|+|.+.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~-~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGY-QVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCC
Confidence 589999999999999999999995 799999886
No 337
>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase. This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).
Probab=89.90 E-value=2.1 Score=42.16 Aligned_cols=30 Identities=33% Similarity=0.554 Sum_probs=24.9
Q ss_pred EEEEc-CChHHHHHHHHHHHcCCceEEEEeC
Q 013180 87 VVVIG-LGGVGSHAAAMLLRSGVGRLLLVDF 116 (448)
Q Consensus 87 VlVVG-~GGvGs~va~~LarsGVg~i~LiD~ 116 (448)
|+|.| +|.+|++++..|...|...+.++|.
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~~~v~~~~~ 31 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGITDILVVDN 31 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCCceEEEEec
Confidence 56776 6999999999999999767777764
No 338
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=89.89 E-value=0.27 Score=55.46 Aligned_cols=33 Identities=24% Similarity=0.354 Sum_probs=29.2
Q ss_pred CcEEEEcCChHHHHHHHHHH-HcCCceEEEEeCCc
Q 013180 85 SYVVVIGLGGVGSHAAAMLL-RSGVGRLLLVDFDQ 118 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~La-rsGVg~i~LiD~D~ 118 (448)
++|.|||+|-.|+.+|..++ ++|+ .++++|.+.
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~-~V~l~d~~~ 343 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGL-PVRIKDINP 343 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCC-eEEEEeCCH
Confidence 67999999999999999999 8895 589999764
No 339
>PLN02650 dihydroflavonol-4-reductase
Probab=89.88 E-value=4.7 Score=40.82 Aligned_cols=33 Identities=30% Similarity=0.287 Sum_probs=26.9
Q ss_pred CCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 84 GSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 84 ~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
+++|+|.|+ |.+|+++++.|+..|. ++++++.+
T Consensus 5 ~k~iLVTGatGfIGs~l~~~L~~~G~-~V~~~~r~ 38 (351)
T PLN02650 5 KETVCVTGASGFIGSWLVMRLLERGY-TVRATVRD 38 (351)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHCCC-EEEEEEcC
Confidence 568999986 9999999999999986 46665544
No 340
>PRK12367 short chain dehydrogenase; Provisional
Probab=89.86 E-value=0.59 Score=45.40 Aligned_cols=40 Identities=15% Similarity=0.335 Sum_probs=34.2
Q ss_pred HHHHhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180 78 SQQKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQ 118 (448)
Q Consensus 78 ~q~kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~ 118 (448)
.|.++++++++|.|+ ||+|.++++.|+..|. ++.++|.+.
T Consensus 8 ~~~~l~~k~~lITGas~gIG~ala~~l~~~G~-~Vi~~~r~~ 48 (245)
T PRK12367 8 AQSTWQGKRIGITGASGALGKALTKAFRAKGA-KVIGLTHSK 48 (245)
T ss_pred hHHhhCCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEECCc
Confidence 588999999999987 7999999999999996 577777653
No 341
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=89.84 E-value=3.4 Score=40.45 Aligned_cols=31 Identities=23% Similarity=0.369 Sum_probs=25.0
Q ss_pred cEEEEcC-ChHHHHHHHHHHHcCC-ceEEEEeC
Q 013180 86 YVVVIGL-GGVGSHAAAMLLRSGV-GRLLLVDF 116 (448)
Q Consensus 86 ~VlVVG~-GGvGs~va~~LarsGV-g~i~LiD~ 116 (448)
+|+|.|. |.+|+++++.|...|- -+++++|.
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~ 33 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDK 33 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecC
Confidence 5889986 9999999999999873 46777654
No 342
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.84 E-value=0.66 Score=49.89 Aligned_cols=33 Identities=36% Similarity=0.426 Sum_probs=29.3
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeC
Q 013180 83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDF 116 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~ 116 (448)
.+++|+|+|+|..|-.++..|...|. ++++.|.
T Consensus 11 ~~~~v~V~G~G~sG~aa~~~L~~~G~-~v~~~D~ 43 (488)
T PRK03369 11 PGAPVLVAGAGVTGRAVLAALTRFGA-RPTVCDD 43 (488)
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEcC
Confidence 57899999999999999999999995 6788774
No 343
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=89.78 E-value=3.6 Score=41.50 Aligned_cols=32 Identities=25% Similarity=0.311 Sum_probs=26.1
Q ss_pred CcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 85 SYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 85 ~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
++|+|.|+ |.+|+++++.|+..|. ++.++|..
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~-~V~~~~r~ 33 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGY-EVHGLIRR 33 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCC-EEEEEecC
Confidence 47889886 8899999999999996 57776643
No 344
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=89.77 E-value=4.7 Score=38.77 Aligned_cols=33 Identities=27% Similarity=0.395 Sum_probs=27.1
Q ss_pred HHhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEE
Q 013180 80 QKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLL 113 (448)
Q Consensus 80 ~kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~L 113 (448)
+..+.++|+|+|+ |++|+.+++.|+..|.. ++.
T Consensus 13 ~~~~~~~ilItGasG~iG~~l~~~L~~~g~~-V~~ 46 (251)
T PLN00141 13 ENVKTKTVFVAGATGRTGKRIVEQLLAKGFA-VKA 46 (251)
T ss_pred ccccCCeEEEECCCcHHHHHHHHHHHhCCCE-EEE
Confidence 4456789999996 99999999999998854 554
No 345
>PLN02688 pyrroline-5-carboxylate reductase
Probab=89.74 E-value=3.6 Score=40.11 Aligned_cols=23 Identities=39% Similarity=0.432 Sum_probs=21.7
Q ss_pred cEEEEcCChHHHHHHHHHHHcCC
Q 013180 86 YVVVIGLGGVGSHAAAMLLRSGV 108 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~LarsGV 108 (448)
+|.+||+|.+|+.++..|.++|.
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~g~ 24 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVASGV 24 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHCCC
Confidence 69999999999999999999985
No 346
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=89.66 E-value=1.7 Score=41.58 Aligned_cols=31 Identities=19% Similarity=0.396 Sum_probs=26.0
Q ss_pred cEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 86 YVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 86 ~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
+|+|.|+ ||+|.++++.|+..|. ++.++|.+
T Consensus 2 ~vlItGasg~iG~~la~~l~~~G~-~V~~~~r~ 33 (248)
T PRK10538 2 IVLVTGATAGFGECITRRFIQQGH-KVIATGRR 33 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCC-EEEEEECC
Confidence 6889985 8999999999999996 57777653
No 347
>PLN00106 malate dehydrogenase
Probab=89.64 E-value=0.53 Score=48.10 Aligned_cols=36 Identities=28% Similarity=0.489 Sum_probs=31.7
Q ss_pred hCCcEEEEcC-ChHHHHHHHHHHHcCC-ceEEEEeCCc
Q 013180 83 SGSYVVVIGL-GGVGSHAAAMLLRSGV-GRLLLVDFDQ 118 (448)
Q Consensus 83 ~~~~VlVVG~-GGvGs~va~~LarsGV-g~i~LiD~D~ 118 (448)
...||+|+|+ |.||+.++..|+..|. .+|.|+|-+.
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~ 54 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN 54 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 4569999999 9999999999998887 5799999865
No 348
>PRK08264 short chain dehydrogenase; Validated
Probab=89.63 E-value=0.49 Score=44.78 Aligned_cols=38 Identities=26% Similarity=0.462 Sum_probs=32.7
Q ss_pred HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180 81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQ 118 (448)
Q Consensus 81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~ 118 (448)
++++++|+|.|+ |++|+++++.|++.|..++.+++.+.
T Consensus 3 ~~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~ 41 (238)
T PRK08264 3 DIKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDP 41 (238)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecCh
Confidence 357789999985 99999999999999987899988653
No 349
>PRK09072 short chain dehydrogenase; Provisional
Probab=89.60 E-value=1.9 Score=41.51 Aligned_cols=35 Identities=37% Similarity=0.611 Sum_probs=29.5
Q ss_pred hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
+++++|+|.|+ ||+|.++++.|+..|. ++.+++.+
T Consensus 3 ~~~~~vlItG~s~~iG~~ia~~l~~~G~-~V~~~~r~ 38 (263)
T PRK09072 3 LKDKRVLLTGASGGIGQALAEALAAAGA-RLLLVGRN 38 (263)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECC
Confidence 56788999985 9999999999999996 58887754
No 350
>PRK06196 oxidoreductase; Provisional
Probab=89.54 E-value=1.8 Score=43.27 Aligned_cols=36 Identities=22% Similarity=0.414 Sum_probs=29.6
Q ss_pred HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
.+++++|+|.|+ ||+|.++++.|+..|. ++.+++.+
T Consensus 23 ~l~~k~vlITGasggIG~~~a~~L~~~G~-~Vv~~~R~ 59 (315)
T PRK06196 23 DLSGKTAIVTGGYSGLGLETTRALAQAGA-HVIVPARR 59 (315)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 356788999988 8999999999999996 47776543
No 351
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=89.44 E-value=0.55 Score=42.54 Aligned_cols=114 Identities=16% Similarity=0.096 Sum_probs=57.1
Q ss_pred cEEEEcCChHHHHHHHHHHH-cCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHH-HHhhhCCCceEEEEeccC
Q 013180 86 YVVVIGLGGVGSHAAAMLLR-SGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKK-HFSSIFPECHIDAKVLLY 163 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~Lar-sGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~-~l~~inP~v~v~~~~~~~ 163 (448)
+|.|+|+|.+|..++..+.. .++.-+.+.|. .++..+...+-| ++--|+.+..+-.+ .-..+| ...+......
T Consensus 2 kv~I~G~GriGr~v~~~~~~~~~~~lvai~d~--~~~~~~a~ll~~-Ds~hg~~~~~v~~~~~~l~i~-g~~i~~~~~~- 76 (149)
T smart00846 2 KVGINGFGRIGRLVLRALLERPDIEVVAINDL--TDPETLAHLLKY-DSVHGRFPGEVEVDEDGLIVN-GKKIKVLAER- 76 (149)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCCEEEEeecC--CCHHHHHHHhcc-cCCCCCCCCcEEEeCCEEEEC-CEEEEEEecC-
Confidence 79999999999999998874 45554555552 344444332211 22345554321100 000011 1122221111
Q ss_pred CccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEE
Q 013180 164 DASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLC 205 (448)
Q Consensus 164 ~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~ 205 (448)
++.+.. .-.-..|+||||+.-+.++.....+...--+.+|-
T Consensus 77 ~p~~~~-w~~~gvDiVie~tG~f~~~~~~~~hl~~GakkVii 117 (149)
T smart00846 77 DPANLP-WKELGVDIVVECTGKFTTREKASAHLKAGAKKVII 117 (149)
T ss_pred ChHHCc-ccccCCeEEEeccccccchHHHHHHHHcCCCEEEe
Confidence 111111 11113899999999988887766555432233444
No 352
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=89.43 E-value=2.4 Score=42.56 Aligned_cols=127 Identities=20% Similarity=0.250 Sum_probs=72.6
Q ss_pred hCCcEEEEcCChHHHH-HHHHHHHcC--CceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEE
Q 013180 83 SGSYVVVIGLGGVGSH-AAAMLLRSG--VGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK 159 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~-va~~LarsG--Vg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~ 159 (448)
+..||.|||||+.+.. .+..+...+ +.-+-++|. ...|++..++.+.-- .
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~-------------------~~~~a~~~a~~~~~~------~-- 54 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDR-------------------DPERAEAFAEEFGIA------K-- 54 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecC-------------------CHHHHHHHHHHcCCC------c--
Confidence 4568999999988754 666777665 233444333 334444444433211 1
Q ss_pred eccCCccchHHHhcC-CCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCccC----------CCceEEcccccccC
Q 013180 160 VLLYDASSEEEILSG-HPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARAD----------PTRIRVADLRESTN 228 (448)
Q Consensus 160 ~~~~~~~~~~~ll~~-~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~d----------pt~i~i~di~~~~~ 228 (448)
.-.+.++++.. +.|+|+.|+-+ .....+...|.++|++++.=--.+.... -..+.+.-....-+
T Consensus 55 ----~~~~~~~ll~~~~iD~V~Iatp~-~~H~e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~~~~~l~v~~~~Rf 129 (342)
T COG0673 55 ----AYTDLEELLADPDIDAVYIATPN-ALHAELALAALEAGKHVLCEKPLALTLEEAEELVELARKAGVKLMVGFNRRF 129 (342)
T ss_pred ----ccCCHHHHhcCCCCCEEEEcCCC-hhhHHHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHHHHcCCceeeehhhhc
Confidence 12345666664 37999999887 4455566777788888887322211000 01222233333447
Q ss_pred ChhhHHHHHHHhh
Q 013180 229 DPLSRAVMHRLRK 241 (448)
Q Consensus 229 dpl~~~~r~~l~~ 241 (448)
+|....+|..+..
T Consensus 130 ~p~~~~~k~li~~ 142 (342)
T COG0673 130 DPAVQALKELIDS 142 (342)
T ss_pred CHHHHHHHHHHhc
Confidence 7888888887765
No 353
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=89.41 E-value=2.2 Score=43.87 Aligned_cols=39 Identities=21% Similarity=0.254 Sum_probs=29.3
Q ss_pred HHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCC
Q 013180 169 EEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGA 209 (448)
Q Consensus 169 ~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~ 209 (448)
++++.+ +|+||+|+.....+. ....|.++|+++|+.++.
T Consensus 73 ~el~~~-vDVVIdaT~~~~~~e-~a~~~~~aGk~VI~~~~~ 111 (341)
T PRK04207 73 EDLLEK-ADIVVDATPGGVGAK-NKELYEKAGVKAIFQGGE 111 (341)
T ss_pred hHhhcc-CCEEEECCCchhhHH-HHHHHHHCCCEEEEcCCC
Confidence 445554 999999998765544 456777889999998874
No 354
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=89.40 E-value=0.5 Score=47.66 Aligned_cols=34 Identities=26% Similarity=0.387 Sum_probs=29.7
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180 84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ 118 (448)
Q Consensus 84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~ 118 (448)
+.+|+|+|+|++|+.+|..|+++| ..+++++.+.
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g-~~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAG-FDVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCC-CeEEEEEeCC
Confidence 468999999999999999999999 5688887664
No 355
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=89.39 E-value=0.52 Score=46.96 Aligned_cols=33 Identities=27% Similarity=0.496 Sum_probs=30.0
Q ss_pred CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180 85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ 118 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~ 118 (448)
++|.|||+|-+|+.+|..|+.+|. +++++|.+.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCH
Confidence 579999999999999999999997 699998765
No 356
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=89.35 E-value=0.51 Score=48.14 Aligned_cols=33 Identities=33% Similarity=0.475 Sum_probs=29.9
Q ss_pred cEEEEcCChHHHHHHHHHHHcCCceEEEEeCCcc
Q 013180 86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQV 119 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V 119 (448)
.|+|||.|-+|+.+|..|++.|. +++|+|...+
T Consensus 2 dvvIIGaGi~G~s~A~~La~~g~-~V~l~e~~~~ 34 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAKHGK-KTLLLEQFDL 34 (380)
T ss_pred cEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCC
Confidence 58999999999999999999996 6999998654
No 357
>PTZ00188 adrenodoxin reductase; Provisional
Probab=89.34 E-value=2.4 Score=45.86 Aligned_cols=96 Identities=20% Similarity=0.173 Sum_probs=59.4
Q ss_pred hCCcEEEEcCChHHHHHHHHHH-HcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhh--CCCceEEEE
Q 013180 83 SGSYVVVIGLGGVGSHAAAMLL-RSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSI--FPECHIDAK 159 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~La-rsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~i--nP~v~v~~~ 159 (448)
+.++|+|||.|..|.++|..|+ +.|+ +++|+|....-- =|.|..... .. ++.+.+.+.+..+ ++.+++..
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~-~VtlfEk~p~pg-GLvR~GVaP-dh---~~~k~v~~~f~~~~~~~~v~f~g- 110 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERV-KVDIFEKLPNPY-GLIRYGVAP-DH---IHVKNTYKTFDPVFLSPNYRFFG- 110 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCC-eEEEEecCCCCc-cEEEEeCCC-CC---ccHHHHHHHHHHHHhhCCeEEEe-
Confidence 4679999999999999999765 5665 599998776554 344443332 22 3444444444332 35555442
Q ss_pred eccCCcc-chHHHhcCCCCeEEEccCCH
Q 013180 160 VLLYDAS-SEEEILSGHPDFVLDCIDNI 186 (448)
Q Consensus 160 ~~~~~~~-~~~~ll~~~~D~VIda~Dn~ 186 (448)
+..+..+ +.+++.. .||.||-|+...
T Consensus 111 nv~VG~Dvt~eeL~~-~YDAVIlAtGA~ 137 (506)
T PTZ00188 111 NVHVGVDLKMEELRN-HYNCVIFCCGAS 137 (506)
T ss_pred eeEecCccCHHHHHh-cCCEEEEEcCCC
Confidence 2223332 3556655 599999988754
No 358
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=89.34 E-value=0.52 Score=47.66 Aligned_cols=32 Identities=34% Similarity=0.470 Sum_probs=29.8
Q ss_pred CcEEEEcCChHHHHHHHHHHHcCCceEEEEeC
Q 013180 85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDF 116 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~ 116 (448)
.+|.|||+|-+|+.+|..|+..|.+++.++|-
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi 33 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDV 33 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeC
Confidence 47999999999999999999999878999997
No 359
>PRK07109 short chain dehydrogenase; Provisional
Probab=89.33 E-value=1.8 Score=44.00 Aligned_cols=35 Identities=29% Similarity=0.516 Sum_probs=29.6
Q ss_pred HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeC
Q 013180 81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF 116 (448)
Q Consensus 81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~ 116 (448)
.++++.|+|.|+ ||+|..+++.|++.|. ++.+++.
T Consensus 5 ~l~~k~vlITGas~gIG~~la~~la~~G~-~Vvl~~R 40 (334)
T PRK07109 5 PIGRQVVVITGASAGVGRATARAFARRGA-KVVLLAR 40 (334)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence 467788999987 8999999999999996 5777664
No 360
>PRK08324 short chain dehydrogenase; Validated
Probab=89.29 E-value=3.3 Score=46.40 Aligned_cols=34 Identities=35% Similarity=0.646 Sum_probs=29.0
Q ss_pred hCCcEEEEc-CChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 83 SGSYVVVIG-LGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 83 ~~~~VlVVG-~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
.++.|+|.| .||+|..+++.|+..|. ++.++|.+
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~r~ 455 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLAAEGA-CVVLADLD 455 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEeCC
Confidence 457899999 59999999999999997 68887754
No 361
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=89.28 E-value=2.1 Score=40.38 Aligned_cols=32 Identities=31% Similarity=0.673 Sum_probs=26.9
Q ss_pred HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEE
Q 013180 81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLL 113 (448)
Q Consensus 81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~L 113 (448)
.|.+++|+|+|+ |++|..+++.|+..|.. +.+
T Consensus 2 ~~~~~~ilI~Gasg~iG~~la~~l~~~g~~-v~~ 34 (247)
T PRK05565 2 KLMGKVAIVTGASGGIGRAIAELLAKEGAK-VVI 34 (247)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEE
Confidence 367789999986 89999999999999976 444
No 362
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=89.28 E-value=3.2 Score=42.53 Aligned_cols=33 Identities=30% Similarity=0.538 Sum_probs=28.7
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeC
Q 013180 84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDF 116 (448)
Q Consensus 84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~ 116 (448)
+.+|+|.|+|++|..++..+...|+.++..+|.
T Consensus 186 g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~ 218 (368)
T TIGR02818 186 GDTVAVFGLGGIGLSVIQGARMAKASRIIAIDI 218 (368)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Confidence 679999999999999999888889877877654
No 363
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=89.26 E-value=0.45 Score=47.74 Aligned_cols=31 Identities=32% Similarity=0.607 Sum_probs=28.7
Q ss_pred EEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 87 VVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 87 VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
|.|||+|.+|+.+|..|+..|.+++.|+|-|
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~ 31 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIV 31 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCC
Confidence 5799999999999999999886699999988
No 364
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=89.25 E-value=0.51 Score=47.95 Aligned_cols=33 Identities=30% Similarity=0.442 Sum_probs=29.7
Q ss_pred cEEEEcC-ChHHHHHHHHHHHcCC-ceEEEEeCCc
Q 013180 86 YVVVIGL-GGVGSHAAAMLLRSGV-GRLLLVDFDQ 118 (448)
Q Consensus 86 ~VlVVG~-GGvGs~va~~LarsGV-g~i~LiD~D~ 118 (448)
||.|+|+ |.||+.+|..|+..|+ .+|.|+|-+.
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~ 35 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG 35 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence 6899999 9999999999999887 5799999764
No 365
>PRK08226 short chain dehydrogenase; Provisional
Probab=89.21 E-value=1.4 Score=42.32 Aligned_cols=36 Identities=33% Similarity=0.673 Sum_probs=30.0
Q ss_pred HHhhCCcEEEEc-CChHHHHHHHHHHHcCCceEEEEeC
Q 013180 80 QKVSGSYVVVIG-LGGVGSHAAAMLLRSGVGRLLLVDF 116 (448)
Q Consensus 80 ~kL~~~~VlVVG-~GGvGs~va~~LarsGVg~i~LiD~ 116 (448)
.++.+++++|.| .||+|..+++.|+..|.. +.+++.
T Consensus 2 ~~~~~~~~lItG~s~giG~~la~~l~~~G~~-Vv~~~r 38 (263)
T PRK08226 2 GKLTGKTALITGALQGIGEGIARVFARHGAN-LILLDI 38 (263)
T ss_pred CCCCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEecC
Confidence 357788999997 678999999999999975 777654
No 366
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=89.16 E-value=0.35 Score=54.53 Aligned_cols=100 Identities=20% Similarity=0.277 Sum_probs=57.5
Q ss_pred CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCccc---ccccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180 85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRH---AVATRADVGTPKALCLKKHFSSIFPECHIDAKVL 161 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq---~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~ 161 (448)
++|.|||+|-.|+.+|..++.+|+ .++|+|.+.=.+...-.+ .+-..-+-|+...+...+.+..+.+. .
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~------~- 385 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGT-PIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPT------L- 385 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe------C-
Confidence 379999999999999999999996 599999774333211000 00000111222222222233222221 1
Q ss_pred cCCccchHHHhcCCCCeEEEcc-CCHHHHHHHHHHHHHc
Q 013180 162 LYDASSEEEILSGHPDFVLDCI-DNIDTKVALLAACVRR 199 (448)
Q Consensus 162 ~~~~~~~~~ll~~~~D~VIda~-Dn~~~r~~l~~~c~~~ 199 (448)
+... +. ++|+||.|+ .+.+.|..+.+-....
T Consensus 386 -----~~~~-~~-~aDlViEav~E~l~~K~~vf~~l~~~ 417 (714)
T TIGR02437 386 -----SYAG-FD-NVDIVVEAVVENPKVKAAVLAEVEQH 417 (714)
T ss_pred -----CHHH-hc-CCCEEEEcCcccHHHHHHHHHHHHhh
Confidence 1122 34 499999997 4788888776655544
No 367
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=89.05 E-value=3.8 Score=40.29 Aligned_cols=94 Identities=21% Similarity=0.219 Sum_probs=67.5
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccC
Q 013180 84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY 163 (448)
Q Consensus 84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~ 163 (448)
..+|+|+|--+=|-.++..|...|+.-+.= +. .+.|.+ -++ .+..+...+
T Consensus 2 ~~~IlvlgGT~egr~la~~L~~~g~~v~~S---------------va--t~~g~~-----------~~~--~~~v~~G~l 51 (248)
T PRK08057 2 MPRILLLGGTSEARALARALAAAGVDIVLS---------------LA--GRTGGP-----------ADL--PGPVRVGGF 51 (248)
T ss_pred CceEEEEechHHHHHHHHHHHhCCCeEEEE---------------Ec--cCCCCc-----------ccC--CceEEECCC
Confidence 357999999999999999999888643321 11 123330 112 234455667
Q ss_pred -CccchHHHhc-CCCCeEEEccCCHHHHH--HHHHHHHHcCCcEEEEc
Q 013180 164 -DASSEEEILS-GHPDFVLDCIDNIDTKV--ALLAACVRRGLKVLCAT 207 (448)
Q Consensus 164 -~~~~~~~ll~-~~~D~VIda~Dn~~~r~--~l~~~c~~~~ip~I~~~ 207 (448)
+.+.+.+++. .++++|||++..++... .+.+.|.+.|+|++--.
T Consensus 52 ~~~~~l~~~l~~~~i~~VIDATHPfA~~is~~a~~ac~~~~ipyiR~e 99 (248)
T PRK08057 52 GGAEGLAAYLREEGIDLVIDATHPYAAQISANAAAACRALGIPYLRLE 99 (248)
T ss_pred CCHHHHHHHHHHCCCCEEEECCCccHHHHHHHHHHHHHHhCCcEEEEe
Confidence 7777777774 36999999999998765 67799999999999843
No 368
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=89.04 E-value=1 Score=48.02 Aligned_cols=39 Identities=33% Similarity=0.505 Sum_probs=34.5
Q ss_pred HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccc
Q 013180 81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVS 120 (448)
Q Consensus 81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~ 120 (448)
.+.+++|+|+|+|..|-.+++.|.+-| -.+++.|.+...
T Consensus 4 ~~~~~kv~V~GLG~sG~a~a~~L~~~G-~~v~v~D~~~~~ 42 (448)
T COG0771 4 DFQGKKVLVLGLGKSGLAAARFLLKLG-AEVTVSDDRPAP 42 (448)
T ss_pred cccCCEEEEEecccccHHHHHHHHHCC-CeEEEEcCCCCc
Confidence 345899999999999999999999999 679999977666
No 369
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=89.01 E-value=2.2 Score=43.86 Aligned_cols=97 Identities=20% Similarity=0.243 Sum_probs=53.7
Q ss_pred CcEEEEcC-ChHHHHHHHHHHHcCCceEEE-EeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180 85 SYVVVIGL-GGVGSHAAAMLLRSGVGRLLL-VDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL 162 (448)
Q Consensus 85 ~~VlVVG~-GGvGs~va~~LarsGVg~i~L-iD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~ 162 (448)
.+|+|+|+ |.+|.+++..|....--++.. .|.. ..|+ .+.+..|++... ....
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~----------------~~g~--------~l~~~~~~~~~~-~~~~ 57 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRS----------------SAGK--------PLSDVHPHLRGL-VDLV 57 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECcc----------------ccCc--------chHHhCcccccc-cCce
Confidence 58999998 889999999999764334433 3311 1111 011111211100 0001
Q ss_pred CCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCC
Q 013180 163 YDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGA 209 (448)
Q Consensus 163 ~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~ 209 (448)
++.... .... ++|+|+.|+.+-.. ..+...|.+.|+++|+-++.
T Consensus 58 ~~~~~~-~~~~-~vD~Vf~alP~~~~-~~~v~~a~~aG~~VID~S~~ 101 (343)
T PRK00436 58 LEPLDP-EILA-GADVVFLALPHGVS-MDLAPQLLEAGVKVIDLSAD 101 (343)
T ss_pred eecCCH-HHhc-CCCEEEECCCcHHH-HHHHHHHHhCCCEEEECCcc
Confidence 111111 1233 49999999988544 44555566789999996653
No 370
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=88.99 E-value=3.2 Score=42.42 Aligned_cols=35 Identities=34% Similarity=0.542 Sum_probs=30.3
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
.+.+|+|.|+|++|..++..+...|..++..+|.+
T Consensus 186 ~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~ 220 (368)
T cd08300 186 PGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDIN 220 (368)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 36889999999999999999999998778877654
No 371
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=88.96 E-value=2.6 Score=34.96 Aligned_cols=70 Identities=10% Similarity=0.059 Sum_probs=47.6
Q ss_pred hHHHHHHHHHhhhCCCceEEEE--eccCCccc--hHHHhcCCCCeEEEccCC--HHHHHHHHHHHHHcCCcEEEEcCCC
Q 013180 138 PKALCLKKHFSSIFPECHIDAK--VLLYDASS--EEEILSGHPDFVLDCIDN--IDTKVALLAACVRRGLKVLCATGAG 210 (448)
Q Consensus 138 ~Kv~~~~~~l~~inP~v~v~~~--~~~~~~~~--~~~ll~~~~D~VIda~Dn--~~~r~~l~~~c~~~~ip~I~~~g~G 210 (448)
......++.+.+.+ .+...+ ........ +...+.. .|+||..+|- ......+-+.|.++++|++.+-+.|
T Consensus 10 ~~~~~~~~~~~~~G--~~~~~hg~~~~~~~~~~~l~~~i~~-aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~~ 85 (97)
T PF10087_consen 10 DRERRYKRILEKYG--GKLIHHGRDGGDEKKASRLPSKIKK-ADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSRG 85 (97)
T ss_pred ccHHHHHHHHHHcC--CEEEEEecCCCCccchhHHHHhcCC-CCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECCCC
Confidence 45556667777755 444444 33333333 5555654 8999999995 4566788899999999999987544
No 372
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=88.94 E-value=5.2 Score=39.96 Aligned_cols=29 Identities=38% Similarity=0.678 Sum_probs=24.7
Q ss_pred cEEEEc-CChHHHHHHHHHHHcCCceEEEEe
Q 013180 86 YVVVIG-LGGVGSHAAAMLLRSGVGRLLLVD 115 (448)
Q Consensus 86 ~VlVVG-~GGvGs~va~~LarsGVg~i~LiD 115 (448)
+|+|.| .|.+|+++++.|+..|. +++++|
T Consensus 2 ~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~ 31 (338)
T PRK10675 2 RVLVTGGSGYIGSHTCVQLLQNGH-DVVILD 31 (338)
T ss_pred eEEEECCCChHHHHHHHHHHHCCC-eEEEEe
Confidence 699999 59999999999999985 466665
No 373
>PRK08265 short chain dehydrogenase; Provisional
Probab=88.94 E-value=0.61 Score=45.15 Aligned_cols=36 Identities=31% Similarity=0.521 Sum_probs=31.0
Q ss_pred HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
.+++++++|.|+ ||+|..+++.|+..|. ++.++|.+
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~ 39 (261)
T PRK08265 3 GLAGKVAIVTGGATLIGAAVARALVAAGA-RVAIVDID 39 (261)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence 467889999987 9999999999999997 68887654
No 374
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.89 E-value=0.6 Score=46.48 Aligned_cols=33 Identities=33% Similarity=0.369 Sum_probs=29.5
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
-++|.|||+|..|+.+|.+|+++|. +++++|.+
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~ 36 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVS 36 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCC
Confidence 4689999999999999999999996 68888865
No 375
>PRK13984 putative oxidoreductase; Provisional
Probab=88.86 E-value=2.3 Score=46.93 Aligned_cols=36 Identities=22% Similarity=0.270 Sum_probs=31.4
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCcc
Q 013180 83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQV 119 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V 119 (448)
..++|+|||+|..|-.+|..|.+.|+ +++|+|.+..
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~-~v~vie~~~~ 317 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGY-EVTVYESLSK 317 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCC
Confidence 57789999999999999999999997 5889886543
No 376
>PRK07806 short chain dehydrogenase; Provisional
Probab=88.85 E-value=2.1 Score=40.65 Aligned_cols=34 Identities=24% Similarity=0.483 Sum_probs=28.1
Q ss_pred HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEe
Q 013180 81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVD 115 (448)
Q Consensus 81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD 115 (448)
++.+++|+|.|+ ||+|..+++.|+..|. ++.+++
T Consensus 3 ~~~~k~vlItGasggiG~~l~~~l~~~G~-~V~~~~ 37 (248)
T PRK07806 3 DLPGKTALVTGSSRGIGADTAKILAGAGA-HVVVNY 37 (248)
T ss_pred CCCCcEEEEECCCCcHHHHHHHHHHHCCC-EEEEEe
Confidence 466789999997 8999999999999996 466644
No 377
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=88.81 E-value=1.1 Score=43.04 Aligned_cols=37 Identities=24% Similarity=0.570 Sum_probs=30.7
Q ss_pred HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180 81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQ 118 (448)
Q Consensus 81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~ 118 (448)
++++++|+|.|+ ||+|.++++.|++.|. ++.++|.+.
T Consensus 3 ~l~~~~vlItGas~~iG~~ia~~l~~~G~-~v~~~~r~~ 40 (257)
T PRK07067 3 RLQGKVALLTGAASGIGEAVAERYLAEGA-RVVIADIKP 40 (257)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEcCCH
Confidence 367889999986 9999999999999996 577776543
No 378
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=88.74 E-value=2.4 Score=42.86 Aligned_cols=39 Identities=26% Similarity=0.502 Sum_probs=32.1
Q ss_pred cEEEEcCChHHHHHHHHHHHcCCc--eEEEEeCCccccCCC
Q 013180 86 YVVVIGLGGVGSHAAAMLLRSGVG--RLLLVDFDQVSVSSL 124 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~LarsGVg--~i~LiD~D~V~~sNL 124 (448)
+|.|||+||-|+.++..|.+.|+. .+..+|.|.-.++.+
T Consensus 2 ~i~viGvGg~G~n~v~~l~~~~~~~~~~~a~ntD~~~L~~~ 42 (304)
T cd02201 2 KIKVIGVGGGGGNAVNRMIESGLEGVEFIAANTDAQALAKS 42 (304)
T ss_pred eEEEEEeCCcHHHHHHHHHHcCCCCceEEEEECCHHHHhcC
Confidence 689999999999999999999986 456678887555444
No 379
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=88.69 E-value=1 Score=43.64 Aligned_cols=31 Identities=26% Similarity=0.482 Sum_probs=22.8
Q ss_pred cEEEEcCChHHHHHHHHHHHcC---CceEEEEeCC
Q 013180 86 YVVVIGLGGVGSHAAAMLLRSG---VGRLLLVDFD 117 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~LarsG---Vg~i~LiD~D 117 (448)
+|.|||||++|..+++.+ +.| +.-+.+.|.|
T Consensus 2 ~vgiVGcGaIG~~l~e~v-~~~~~~~e~v~v~D~~ 35 (255)
T COG1712 2 KVGIVGCGAIGKFLLELV-RDGRVDFELVAVYDRD 35 (255)
T ss_pred eEEEEeccHHHHHHHHHH-hcCCcceeEEEEecCC
Confidence 689999999999998765 444 4555555554
No 380
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=88.69 E-value=3.4 Score=44.16 Aligned_cols=34 Identities=32% Similarity=0.495 Sum_probs=30.6
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
..++|+|||.|..|..+|..|++.|. +++++|..
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~-~V~vie~~ 175 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGH-KVTVFERA 175 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCC-cEEEEecC
Confidence 45799999999999999999999997 59999865
No 381
>PRK13243 glyoxylate reductase; Reviewed
Probab=88.68 E-value=0.59 Score=47.82 Aligned_cols=36 Identities=28% Similarity=0.411 Sum_probs=31.7
Q ss_pred HHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeC
Q 013180 80 QKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDF 116 (448)
Q Consensus 80 ~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~ 116 (448)
..|++++|.|||+|.+|..+|+.|...|. ++..+|.
T Consensus 146 ~~L~gktvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~ 181 (333)
T PRK13243 146 YDVYGKTIGIIGFGRIGQAVARRAKGFGM-RILYYSR 181 (333)
T ss_pred cCCCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECC
Confidence 36899999999999999999999999997 5777665
No 382
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.67 E-value=0.63 Score=46.70 Aligned_cols=32 Identities=34% Similarity=0.651 Sum_probs=28.7
Q ss_pred CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
++|.|||+|.+|+.+|..|+++|. +++++|.+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~~ 36 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGL-QVVLIDVM 36 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence 579999999999999999999996 68888865
No 383
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=88.66 E-value=0.63 Score=50.45 Aligned_cols=33 Identities=33% Similarity=0.493 Sum_probs=29.2
Q ss_pred CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180 85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ 118 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~ 118 (448)
++|.|||+|-.|+.+|.+|+++|+ .++++|.+.
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~-~V~l~D~~~ 40 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGH-TVLLYDARA 40 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCH
Confidence 579999999999999999999996 488888663
No 384
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=88.65 E-value=2 Score=43.05 Aligned_cols=34 Identities=26% Similarity=0.368 Sum_probs=28.0
Q ss_pred hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeC
Q 013180 82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF 116 (448)
Q Consensus 82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~ 116 (448)
+.+++|+|.|+ ||+|.++++.|++.|. ++.+++.
T Consensus 4 ~~~k~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r 38 (322)
T PRK07453 4 DAKGTVIITGASSGVGLYAAKALAKRGW-HVIMACR 38 (322)
T ss_pred CCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEEC
Confidence 45678999975 8999999999999994 6777664
No 385
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=88.63 E-value=0.6 Score=46.34 Aligned_cols=34 Identities=26% Similarity=0.423 Sum_probs=28.2
Q ss_pred CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCcc
Q 013180 85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQV 119 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V 119 (448)
..|+|||+|-.|+.+|..|++.|+. ++|+|.+.-
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~-v~i~E~~~~ 35 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGID-VTIIERRPD 35 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCE-EEEEESSSS
T ss_pred ceEEEECCCHHHHHHHHHHHhcccc-cccchhccc
Confidence 3699999999999999999999977 889887654
No 386
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=88.62 E-value=3.4 Score=41.09 Aligned_cols=98 Identities=21% Similarity=0.347 Sum_probs=51.0
Q ss_pred cEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccCC
Q 013180 86 YVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYD 164 (448)
Q Consensus 86 ~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~~ 164 (448)
||+|+|+ |-+|+.+...|...|..-+.+ +.. .-|+ ...+.+.+.+.+..|++-|.+-. ++
T Consensus 2 riLI~GasG~lG~~l~~~l~~~~~~v~~~-~r~--------------~~dl--~d~~~~~~~~~~~~pd~Vin~aa--~~ 62 (286)
T PF04321_consen 2 RILITGASGFLGSALARALKERGYEVIAT-SRS--------------DLDL--TDPEAVAKLLEAFKPDVVINCAA--YT 62 (286)
T ss_dssp EEEEETTTSHHHHHHHHHHTTTSEEEEEE-STT--------------CS-T--TSHHHHHHHHHHH--SEEEE-------
T ss_pred EEEEECCCCHHHHHHHHHHhhCCCEEEEe-Cch--------------hcCC--CCHHHHHHHHHHhCCCeEeccce--ee
Confidence 7999995 999999999999887543333 333 1122 23455566666666665444321 11
Q ss_pred c-cchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcC
Q 013180 165 A-SSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATG 208 (448)
Q Consensus 165 ~-~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g 208 (448)
. +..+. +++. ...-|...-..|.++|.++++++|+-+.
T Consensus 63 ~~~~ce~----~p~~--a~~iN~~~~~~la~~~~~~~~~li~~ST 101 (286)
T PF04321_consen 63 NVDACEK----NPEE--AYAINVDATKNLAEACKERGARLIHIST 101 (286)
T ss_dssp -HHHHHH----SHHH--HHHHHTHHHHHHHHHHHHCT-EEEEEEE
T ss_pred cHHhhhh----Chhh--hHHHhhHHHHHHHHHHHHcCCcEEEeec
Confidence 0 00000 0000 0001223345788999999999988553
No 387
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=88.55 E-value=0.58 Score=47.53 Aligned_cols=32 Identities=31% Similarity=0.486 Sum_probs=29.5
Q ss_pred cEEEEcC-ChHHHHHHHHHHHcCC-ceEEEEeCC
Q 013180 86 YVVVIGL-GGVGSHAAAMLLRSGV-GRLLLVDFD 117 (448)
Q Consensus 86 ~VlVVG~-GGvGs~va~~LarsGV-g~i~LiD~D 117 (448)
||.|||+ |.||+.+|..|+..|+ .+|.|+|-.
T Consensus 2 KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~ 35 (310)
T cd01337 2 KVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV 35 (310)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC
Confidence 7999999 9999999999998886 689999986
No 388
>PLN02503 fatty acyl-CoA reductase 2
Probab=88.52 E-value=6.1 Score=43.84 Aligned_cols=133 Identities=17% Similarity=0.173 Sum_probs=75.9
Q ss_pred CHHHHHHhhCCcEEEEcC-ChHHHHHHHHHHHcC--CceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhC
Q 013180 75 GVESQQKVSGSYVVVIGL-GGVGSHAAAMLLRSG--VGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIF 151 (448)
Q Consensus 75 G~~~q~kL~~~~VlVVG~-GGvGs~va~~LarsG--Vg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~in 151 (448)
|..-++-+++++|+|-|+ |-+|+.+++.|++.+ |++|.++....=..+-..|.. ..+ +-..+-+++++.+
T Consensus 110 ~~~I~~f~~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~----~~l---~~~~lf~~l~~~~ 182 (605)
T PLN02503 110 GIGIAEFLRGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLK----NEV---IDAELFKCLQETH 182 (605)
T ss_pred CcchhhhhcCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHH----HHH---hhhhhHHHHHHhc
Confidence 444567889999999988 889999999999874 788888543211111111110 000 0001123444545
Q ss_pred CC-------ceEEEEeccCCcc-------chHHHhcCCCCeEEEccCCHH--------------HHHHHHHHHHHcC--C
Q 013180 152 PE-------CHIDAKVLLYDAS-------SEEEILSGHPDFVLDCIDNID--------------TKVALLAACVRRG--L 201 (448)
Q Consensus 152 P~-------v~v~~~~~~~~~~-------~~~~ll~~~~D~VIda~Dn~~--------------~r~~l~~~c~~~~--i 201 (448)
|. -++.++...++.. ....+.. ++|+||.+..+.. .-..+.++|.+.+ .
T Consensus 183 g~~~~~~~~~Ki~~v~GDl~d~~LGLs~~~~~~L~~-~vDiVIH~AA~v~f~~~~~~a~~vNV~GT~nLLelA~~~~~lk 261 (605)
T PLN02503 183 GKSYQSFMLSKLVPVVGNVCESNLGLEPDLADEIAK-EVDVIINSAANTTFDERYDVAIDINTRGPCHLMSFAKKCKKLK 261 (605)
T ss_pred CccccccccccEEEEEeeCCCcccCCCHHHHHHHHh-cCCEEEECccccccccCHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 42 3577666665543 2333444 4999998875321 1235677887753 4
Q ss_pred cEEEEcCCCCccCC
Q 013180 202 KVLCATGAGARADP 215 (448)
Q Consensus 202 p~I~~~g~G~k~dp 215 (448)
.++..+.+...++.
T Consensus 262 ~fV~vSTayVyG~~ 275 (605)
T PLN02503 262 LFLQVSTAYVNGQR 275 (605)
T ss_pred eEEEccCceeecCC
Confidence 57776655443443
No 389
>PRK05650 short chain dehydrogenase; Provisional
Probab=88.51 E-value=2.9 Score=40.51 Aligned_cols=30 Identities=33% Similarity=0.467 Sum_probs=24.7
Q ss_pred cEEEEcC-ChHHHHHHHHHHHcCCceEEEEeC
Q 013180 86 YVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF 116 (448)
Q Consensus 86 ~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~ 116 (448)
+|+|.|+ ||+|..+++.|+..|.. +.++|.
T Consensus 2 ~vlVtGasggIG~~la~~l~~~g~~-V~~~~r 32 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREGWR-LALADV 32 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCE-EEEEeC
Confidence 6888875 89999999999999974 666554
No 390
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=88.47 E-value=0.67 Score=47.42 Aligned_cols=88 Identities=20% Similarity=0.236 Sum_probs=58.2
Q ss_pred HHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEE
Q 013180 80 QKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK 159 (448)
Q Consensus 80 ~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~ 159 (448)
..|++++|.|||+|.+|..+|+.|...|. ++..+|...- +.. . ..+
T Consensus 142 ~~l~g~~VgIIG~G~IG~~vA~~L~~~G~-~V~~~d~~~~-------------------~~~---~-------~~~---- 187 (330)
T PRK12480 142 KPVKNMTVAIIGTGRIGAATAKIYAGFGA-TITAYDAYPN-------------------KDL---D-------FLT---- 187 (330)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCChh-------------------Hhh---h-------hhh----
Confidence 36899999999999999999999999996 5788775420 000 0 000
Q ss_pred eccCCccchHHHhcCCCCeEEEccCCH-HHHHHHHHHHHH---cCCcEEEE
Q 013180 160 VLLYDASSEEEILSGHPDFVLDCIDNI-DTKVALLAACVR---RGLKVLCA 206 (448)
Q Consensus 160 ~~~~~~~~~~~ll~~~~D~VIda~Dn~-~~r~~l~~~c~~---~~ip~I~~ 206 (448)
+ ..+.++++.. .|+|+.|+... +++..+++-... .+.-+|+.
T Consensus 188 ---~-~~~l~ell~~-aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~ 233 (330)
T PRK12480 188 ---Y-KDSVKEAIKD-ADIISLHVPANKESYHLFDKAMFDHVKKGAILVNA 233 (330)
T ss_pred ---c-cCCHHHHHhc-CCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEc
Confidence 1 1235667765 99999988754 466666643332 34445553
No 391
>PRK08589 short chain dehydrogenase; Validated
Probab=88.47 E-value=2.1 Score=41.78 Aligned_cols=34 Identities=29% Similarity=0.532 Sum_probs=28.7
Q ss_pred HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEe
Q 013180 81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVD 115 (448)
Q Consensus 81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD 115 (448)
++++++++|.|+ ||+|.++++.|+..|. ++.++|
T Consensus 3 ~l~~k~vlItGas~gIG~aia~~l~~~G~-~vi~~~ 37 (272)
T PRK08589 3 RLENKVAVITGASTGIGQASAIALAQEGA-YVLAVD 37 (272)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEe
Confidence 467889999987 8999999999999996 566654
No 392
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=88.39 E-value=2.7 Score=42.37 Aligned_cols=97 Identities=19% Similarity=0.214 Sum_probs=56.4
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180 83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL 162 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~ 162 (448)
.+.+|+|.|+|++|..++..+...|+..+..+|... .|.+.+ +++....-+....
T Consensus 160 ~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~-------------------~~~~~~----~~~Ga~~~i~~~~-- 214 (347)
T PRK10309 160 EGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINS-------------------EKLALA----KSLGAMQTFNSRE-- 214 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCH-------------------HHHHHH----HHcCCceEecCcc--
Confidence 467999999999999999999999988777765321 122211 1111110111100
Q ss_pred CCccchHHHhc-CCCC-eEEEccCCHHHHHHHHHHHHHcCCcEE
Q 013180 163 YDASSEEEILS-GHPD-FVLDCIDNIDTKVALLAACVRRGLKVL 204 (448)
Q Consensus 163 ~~~~~~~~ll~-~~~D-~VIda~Dn~~~r~~l~~~c~~~~ip~I 204 (448)
.+.+...++.. ..+| +||||+....+-....+..+..|.-++
T Consensus 215 ~~~~~~~~~~~~~~~d~~v~d~~G~~~~~~~~~~~l~~~G~iv~ 258 (347)
T PRK10309 215 MSAPQIQSVLRELRFDQLILETAGVPQTVELAIEIAGPRAQLAL 258 (347)
T ss_pred cCHHHHHHHhcCCCCCeEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence 01111222222 2477 999999987665666677776666333
No 393
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=88.34 E-value=2.4 Score=42.09 Aligned_cols=82 Identities=22% Similarity=0.330 Sum_probs=59.9
Q ss_pred hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe
Q 013180 82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV 160 (448)
Q Consensus 82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~ 160 (448)
++.++++|-|+ +|+|-++|+.|++-|.. +.|+ .|. +.|-+.+++.|.+.+ .++++.++
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~~-liLv----------aR~---------~~kL~~la~~l~~~~-~v~v~vi~ 62 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGYN-LILV----------ARR---------EDKLEALAKELEDKT-GVEVEVIP 62 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCE-EEEE----------eCc---------HHHHHHHHHHHHHhh-CceEEEEE
Confidence 46788999998 79999999999999965 6663 232 357788888888887 78888888
Q ss_pred ccCCccc-hHHHh----c--CCCCeEEEccC
Q 013180 161 LLYDASS-EEEIL----S--GHPDFVLDCID 184 (448)
Q Consensus 161 ~~~~~~~-~~~ll----~--~~~D~VIda~D 184 (448)
..++..+ ...+. . ...|++|++..
T Consensus 63 ~DLs~~~~~~~l~~~l~~~~~~IdvLVNNAG 93 (265)
T COG0300 63 ADLSDPEALERLEDELKERGGPIDVLVNNAG 93 (265)
T ss_pred CcCCChhHHHHHHHHHHhcCCcccEEEECCC
Confidence 7776543 33322 1 25899987754
No 394
>PTZ00325 malate dehydrogenase; Provisional
Probab=88.28 E-value=0.6 Score=47.66 Aligned_cols=35 Identities=29% Similarity=0.421 Sum_probs=30.2
Q ss_pred hhCCcEEEEcC-ChHHHHHHHHHHHcCC-ceEEEEeC
Q 013180 82 VSGSYVVVIGL-GGVGSHAAAMLLRSGV-GRLLLVDF 116 (448)
Q Consensus 82 L~~~~VlVVG~-GGvGs~va~~LarsGV-g~i~LiD~ 116 (448)
++-.||+|+|+ |.||+.++..|+..|. .+|.|+|-
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di 42 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDI 42 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEec
Confidence 44569999999 9999999999997776 47999988
No 395
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.27 E-value=0.56 Score=50.19 Aligned_cols=40 Identities=28% Similarity=0.328 Sum_probs=34.8
Q ss_pred HHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 77 ESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 77 ~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
+....+.+++|+|+|+||.|..++..|.+.|. .+++.|.+
T Consensus 8 ~~~~~~~~~~v~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~ 47 (473)
T PRK00141 8 SALPQELSGRVLVAGAGVSGRGIAAMLSELGC-DVVVADDN 47 (473)
T ss_pred hhcccccCCeEEEEccCHHHHHHHHHHHHCCC-EEEEECCC
Confidence 34455677899999999999999999999998 89999964
No 396
>PRK06198 short chain dehydrogenase; Provisional
Probab=88.26 E-value=1 Score=43.10 Aligned_cols=37 Identities=22% Similarity=0.425 Sum_probs=32.0
Q ss_pred HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
.+++++|+|.|+ |++|+.+++.|+..|..++.++|.+
T Consensus 3 ~~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~ 40 (260)
T PRK06198 3 RLDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRN 40 (260)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCC
Confidence 477889999986 8999999999999998778887664
No 397
>PRK08643 acetoin reductase; Validated
Probab=88.23 E-value=3.3 Score=39.60 Aligned_cols=31 Identities=29% Similarity=0.486 Sum_probs=25.4
Q ss_pred CCcEEEEc-CChHHHHHHHHHHHcCCceEEEEe
Q 013180 84 GSYVVVIG-LGGVGSHAAAMLLRSGVGRLLLVD 115 (448)
Q Consensus 84 ~~~VlVVG-~GGvGs~va~~LarsGVg~i~LiD 115 (448)
++.++|.| .||+|.++++.|+..|. ++.++|
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G~-~v~~~~ 33 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGF-KVAIVD 33 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEe
Confidence 45677775 57999999999999996 577766
No 398
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=88.17 E-value=2.8 Score=39.85 Aligned_cols=34 Identities=26% Similarity=0.595 Sum_probs=28.1
Q ss_pred hhCCcEEEEc-CChHHHHHHHHHHHcCCceEEEEeC
Q 013180 82 VSGSYVVVIG-LGGVGSHAAAMLLRSGVGRLLLVDF 116 (448)
Q Consensus 82 L~~~~VlVVG-~GGvGs~va~~LarsGVg~i~LiD~ 116 (448)
+++++|+|.| .|++|+++++.|+..|. ++.++|.
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~~g~-~v~~~~r 36 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAKEGA-KVVIADL 36 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeC
Confidence 4678999998 59999999999999986 5666544
No 399
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=88.14 E-value=6.1 Score=40.05 Aligned_cols=95 Identities=21% Similarity=0.242 Sum_probs=56.2
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHcC-CceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180 83 SGSYVVVIGLGGVGSHAAAMLLRSG-VGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL 161 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsG-Vg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~ 161 (448)
++-+|.|||+|.+|...+..|.++. +.=..++|.|.= ...... +++ .. +..
T Consensus 3 ~klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~e-----------------s~gla~-A~~---~G--i~~----- 54 (302)
T PRK08300 3 SKLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPE-----------------SDGLAR-ARR---LG--VAT----- 54 (302)
T ss_pred CCCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChh-----------------hHHHHH-HHH---cC--CCc-----
Confidence 4578999999999999888777653 222223343310 000011 111 11 111
Q ss_pred cCCccchHHHhc----CCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcC
Q 013180 162 LYDASSEEEILS----GHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATG 208 (448)
Q Consensus 162 ~~~~~~~~~ll~----~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g 208 (448)
..++.++++. .+.|+|++|+.+. ........+.+.|+.+|+-..
T Consensus 55 --~~~~ie~LL~~~~~~dIDiVf~AT~a~-~H~e~a~~a~eaGk~VID~sP 102 (302)
T PRK08300 55 --SAEGIDGLLAMPEFDDIDIVFDATSAG-AHVRHAAKLREAGIRAIDLTP 102 (302)
T ss_pred --ccCCHHHHHhCcCCCCCCEEEECCCHH-HHHHHHHHHHHcCCeEEECCc
Confidence 1123444543 3599999999874 556667778899999998554
No 400
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=88.13 E-value=3.3 Score=40.65 Aligned_cols=35 Identities=34% Similarity=0.502 Sum_probs=30.3
Q ss_pred hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeC
Q 013180 82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDF 116 (448)
Q Consensus 82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~ 116 (448)
..+.+|+|.|+|++|..++..+...|+.++..+|.
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~ 153 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADP 153 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence 36789999999999999999888999988887753
No 401
>PRK07074 short chain dehydrogenase; Provisional
Probab=88.11 E-value=2.8 Score=40.07 Aligned_cols=33 Identities=36% Similarity=0.605 Sum_probs=27.5
Q ss_pred CCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 84 GSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 84 ~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
+++++|.|+ |++|..+++.|+..|. ++.++|.+
T Consensus 2 ~k~ilItGat~~iG~~la~~L~~~g~-~v~~~~r~ 35 (257)
T PRK07074 2 KRTALVTGAAGGIGQALARRFLAAGD-RVLALDID 35 (257)
T ss_pred CCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 467999987 8999999999999995 57776653
No 402
>PRK08278 short chain dehydrogenase; Provisional
Probab=88.09 E-value=3.6 Score=40.11 Aligned_cols=35 Identities=23% Similarity=0.415 Sum_probs=29.8
Q ss_pred hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
+++++++|.|+ ||+|.++++.|+..|. ++.++|.+
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~ 39 (273)
T PRK08278 4 LSGKTLFITGASRGIGLAIALRAARDGA-NIVIAAKT 39 (273)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecc
Confidence 56788999986 8999999999999997 57777655
No 403
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=88.07 E-value=6.4 Score=39.94 Aligned_cols=33 Identities=24% Similarity=0.270 Sum_probs=26.5
Q ss_pred hCCcEEEEc-CChHHHHHHHHHHHcCCceEEEEeC
Q 013180 83 SGSYVVVIG-LGGVGSHAAAMLLRSGVGRLLLVDF 116 (448)
Q Consensus 83 ~~~~VlVVG-~GGvGs~va~~LarsGVg~i~LiD~ 116 (448)
.+++|+|.| +|.+|+++++.|+..|. ++.+++.
T Consensus 9 ~~~~vLVtG~~GfIG~~l~~~L~~~G~-~V~~~~r 42 (353)
T PLN02896 9 ATGTYCVTGATGYIGSWLVKLLLQRGY-TVHATLR 42 (353)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence 456899998 58899999999999986 4555544
No 404
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=88.04 E-value=3.9 Score=41.83 Aligned_cols=108 Identities=12% Similarity=0.127 Sum_probs=58.4
Q ss_pred CCcEEEEcCChHHHHHHHHHHHc-CCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe--
Q 013180 84 GSYVVVIGLGGVGSHAAAMLLRS-GVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV-- 160 (448)
Q Consensus 84 ~~~VlVVG~GGvGs~va~~Lars-GVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~-- 160 (448)
.-||.|||+|.+|..++..|... ++.=+.++|.+.-+ .+. .++|.....-..+ +.+.+.+-.+.
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~--~~~-------~~~~v~~~~d~~e----~l~~iDVViIctP 69 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAE--TLD-------TETPVYAVADDEK----HLDDVDVLILCMG 69 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHH--HHh-------hcCCccccCCHHH----hccCCCEEEEcCC
Confidence 46899999999999999999865 66656677776311 111 1122211111111 12344444332
Q ss_pred ccCCccchHHHhcCCCCeEEEccCC----HHHHHHHHHHHHHcCCcEEE
Q 013180 161 LLYDASSEEEILSGHPDFVLDCIDN----IDTKVALLAACVRRGLKVLC 205 (448)
Q Consensus 161 ~~~~~~~~~~ll~~~~D~VIda~Dn----~~~r~~l~~~c~~~~ip~I~ 205 (448)
.....+....++....++| |+-|. .+.+..|.++|++.+.-.+.
T Consensus 70 s~th~~~~~~~L~aG~NVV-~s~~~h~~~p~~~~~ld~AAk~~g~vsvi 117 (324)
T TIGR01921 70 SATDIPEQAPYFAQFANTV-DSFDNHRDIPRHRQVMDAAAKAAGNVSVI 117 (324)
T ss_pred CccCHHHHHHHHHcCCCEE-ECCCcccCCHHHHHHHHHHHHHcCCEEEE
Confidence 2233344445555446654 34442 24466788888875444443
No 405
>PRK07677 short chain dehydrogenase; Provisional
Probab=88.03 E-value=3.4 Score=39.52 Aligned_cols=33 Identities=18% Similarity=0.357 Sum_probs=27.3
Q ss_pred CCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 84 GSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 84 ~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
+++++|.|+ ||+|..+++.|+..|. ++.++|.+
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~ 34 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRT 34 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence 357888877 6799999999999998 68887655
No 406
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=88.02 E-value=3.1 Score=47.20 Aligned_cols=35 Identities=29% Similarity=0.339 Sum_probs=31.3
Q ss_pred hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
-..++|+|||+|..|..+|..|++.|. +++|+|..
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~-~V~v~e~~ 463 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKRGY-DVTVFEAL 463 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCC-eEEEEecC
Confidence 357899999999999999999999996 59999874
No 407
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=88.01 E-value=0.37 Score=54.59 Aligned_cols=100 Identities=14% Similarity=0.275 Sum_probs=56.5
Q ss_pred CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccc---cccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180 85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHA---VATRADVGTPKALCLKKHFSSIFPECHIDAKVL 161 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~---l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~ 161 (448)
++|.|||+|-.|+-+|..++.+|+ .++|+|.+.=.+....... +-..-.-|+-..+...+.+.++.+ ..
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~------~~- 407 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGL-KTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTP------TL- 407 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCC-cEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE------eC-
Confidence 579999999999999999999996 5889987743322210000 000001121111222222222221 11
Q ss_pred cCCccchHHHhcCCCCeEEEcc-CCHHHHHHHHHHHHHc
Q 013180 162 LYDASSEEEILSGHPDFVLDCI-DNIDTKVALLAACVRR 199 (448)
Q Consensus 162 ~~~~~~~~~ll~~~~D~VIda~-Dn~~~r~~l~~~c~~~ 199 (448)
+.+. +. ++|+||.|+ .+.+.|..+.+-..+.
T Consensus 408 -----~~~~-~~-~aDlViEAv~E~l~~K~~vf~~l~~~ 439 (737)
T TIGR02441 408 -----DYSG-FK-NADMVIEAVFEDLSLKHKVIKEVEAV 439 (737)
T ss_pred -----CHHH-hc-cCCeehhhccccHHHHHHHHHHHHhh
Confidence 1122 34 499999987 5788888776655544
No 408
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=87.96 E-value=0.68 Score=49.12 Aligned_cols=32 Identities=41% Similarity=0.408 Sum_probs=28.9
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeC
Q 013180 84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDF 116 (448)
Q Consensus 84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~ 116 (448)
..+|+|||.|-+|+++|..|++.|+. ++|+|.
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl~-V~LiE~ 33 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGVP-VELYEM 33 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCc-EEEEEc
Confidence 35899999999999999999999965 899984
No 409
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=87.93 E-value=0.68 Score=48.31 Aligned_cols=35 Identities=31% Similarity=0.437 Sum_probs=30.9
Q ss_pred HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeC
Q 013180 81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDF 116 (448)
Q Consensus 81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~ 116 (448)
.|++++|.|||+|.+|+.+|+.|...|+. +..+|+
T Consensus 113 ~L~gktvGIIG~G~IG~~vA~~l~a~G~~-V~~~dp 147 (378)
T PRK15438 113 SLHDRTVGIVGVGNVGRRLQARLEALGIK-TLLCDP 147 (378)
T ss_pred CcCCCEEEEECcCHHHHHHHHHHHHCCCE-EEEECC
Confidence 58999999999999999999999999975 666663
No 410
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=87.88 E-value=2.9 Score=39.68 Aligned_cols=30 Identities=30% Similarity=0.399 Sum_probs=24.7
Q ss_pred hhCCcEEEEcC-ChHHHHHHHHHHHcCCceE
Q 013180 82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRL 111 (448)
Q Consensus 82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i 111 (448)
+.+++|+|.|+ ||+|.+++..|+..|..-+
T Consensus 2 ~~~~~vlItGa~g~iG~~~a~~l~~~g~~v~ 32 (250)
T PRK08063 2 FSGKVALVTGSSRGIGKAIALRLAEEGYDIA 32 (250)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEE
Confidence 45678999976 7999999999999996533
No 411
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=87.87 E-value=2.3 Score=49.81 Aligned_cols=35 Identities=34% Similarity=0.450 Sum_probs=31.4
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180 83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ 118 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~ 118 (448)
.+++|+|||.|..|-.+|..|++.|. +++|+|...
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~-~VtV~Ek~~ 572 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGH-PVTVFEREE 572 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCC-eEEEEeccc
Confidence 56899999999999999999999996 699998653
No 412
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=87.83 E-value=1.5 Score=43.47 Aligned_cols=80 Identities=11% Similarity=0.203 Sum_probs=49.3
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCC---ceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe
Q 013180 84 GSYVVVIGLGGVGSHAAAMLLRSGV---GRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV 160 (448)
Q Consensus 84 ~~~VlVVG~GGvGs~va~~LarsGV---g~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~ 160 (448)
+.+|.+||+|-+|+.++..|..+|. .+|.++|.+ ..|.+.+.+.+ .+++ .
T Consensus 2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~-------------------~~~~~~l~~~~-----g~~~--~- 54 (272)
T PRK12491 2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLN-------------------VSNLKNASDKY-----GITI--T- 54 (272)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCC-------------------HHHHHHHHHhc-----CcEE--e-
Confidence 4579999999999999999999985 245554332 12333222211 1221 1
Q ss_pred ccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHH
Q 013180 161 LLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAAC 196 (448)
Q Consensus 161 ~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c 196 (448)
.+..+.+. ++|+||-|+-.......+..+.
T Consensus 55 -----~~~~e~~~-~aDiIiLavkP~~~~~vl~~l~ 84 (272)
T PRK12491 55 -----TNNNEVAN-SADILILSIKPDLYSSVINQIK 84 (272)
T ss_pred -----CCcHHHHh-hCCEEEEEeChHHHHHHHHHHH
Confidence 12233444 4999999999766666665554
No 413
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=87.79 E-value=0.98 Score=45.98 Aligned_cols=34 Identities=18% Similarity=0.344 Sum_probs=30.8
Q ss_pred cEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccc
Q 013180 86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVS 120 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~ 120 (448)
.|+|||.|-+|+.+|..|++.|. +++|+|.+.+.
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~~G~-~V~vle~~~~~ 35 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAARRGL-SVTVIERSSRA 35 (365)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCCCC
Confidence 69999999999999999999996 69999988764
No 414
>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]
Probab=87.77 E-value=7.2 Score=39.88 Aligned_cols=124 Identities=25% Similarity=0.334 Sum_probs=75.9
Q ss_pred CCcEEEE-cCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCC-CceEEEEec
Q 013180 84 GSYVVVI-GLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFP-ECHIDAKVL 161 (448)
Q Consensus 84 ~~~VlVV-G~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP-~v~v~~~~~ 161 (448)
..+|+|. |+|=+||+++..|.+.|-+ +.++| ||+|-.+ ..-++++++.+ .-.|..+..
T Consensus 2 ~~~VLVtGgaGyiGsht~l~L~~~gy~-v~~vD-------Nl~n~~~------------~sl~r~~~l~~~~~~v~f~~~ 61 (343)
T KOG1371|consen 2 GKHVLVTGGAGYIGSHTVLALLKRGYG-VVIVD-------NLNNSYL------------ESLKRVRQLLGEGKSVFFVEG 61 (343)
T ss_pred CcEEEEecCCcceehHHHHHHHhCCCc-EEEEe-------cccccch------------hHHHHHHHhcCCCCceEEEEe
Confidence 4678888 6789999999999999977 44544 6776652 22234444443 123444443
Q ss_pred cC-CccchHHHhcC-CCCeEEEccC-----------------CHHHHHHHHHHHHHcCCc-EEEEcCCCCccCCCceEEc
Q 013180 162 LY-DASSEEEILSG-HPDFVLDCID-----------------NIDTKVALLAACVRRGLK-VLCATGAGARADPTRIRVA 221 (448)
Q Consensus 162 ~~-~~~~~~~ll~~-~~D~VIda~D-----------------n~~~r~~l~~~c~~~~ip-~I~~~g~G~k~dpt~i~i~ 221 (448)
.+ +.+.++.++.. ++|-|+--.. |+..-.-+.+.|.+++.| ++++++++..+.|+.+-|.
T Consensus 62 Dl~D~~~L~kvF~~~~fd~V~Hfa~~~~vgeS~~~p~~Y~~nNi~gtlnlLe~~~~~~~~~~V~sssatvYG~p~~ip~t 141 (343)
T KOG1371|consen 62 DLNDAEALEKLFSEVKFDAVMHFAALAAVGESMENPLSYYHNNIAGTLNLLEVMKAHNVKALVFSSSATVYGLPTKVPIT 141 (343)
T ss_pred ccCCHHHHHHHHhhcCCceEEeehhhhccchhhhCchhheehhhhhHHHHHHHHHHcCCceEEEecceeeecCcceeecc
Confidence 33 33344444432 3665552111 233345677889888877 5567777778999997776
Q ss_pred cccccc
Q 013180 222 DLREST 227 (448)
Q Consensus 222 di~~~~ 227 (448)
+-..+.
T Consensus 142 e~~~t~ 147 (343)
T KOG1371|consen 142 EEDPTD 147 (343)
T ss_pred CcCCCC
Confidence 655554
No 415
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=87.71 E-value=0.76 Score=47.61 Aligned_cols=32 Identities=31% Similarity=0.471 Sum_probs=29.6
Q ss_pred cEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180 86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ 118 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~ 118 (448)
+|+|||.|-+|+.+|..|++.|. +++|+|.+.
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g~-~V~vle~~~ 33 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAGH-EVTVIDRQP 33 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCC
Confidence 69999999999999999999995 699999984
No 416
>PRK06185 hypothetical protein; Provisional
Probab=87.71 E-value=0.73 Score=47.66 Aligned_cols=35 Identities=20% Similarity=0.364 Sum_probs=31.3
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180 83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ 118 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~ 118 (448)
.+..|+|||.|-+|..+|..|++.|+ +++|+|.+.
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~~G~-~v~liE~~~ 39 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLARAGV-DVTVLEKHA 39 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Confidence 45789999999999999999999997 599999764
No 417
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=87.70 E-value=0.8 Score=47.94 Aligned_cols=34 Identities=29% Similarity=0.268 Sum_probs=28.5
Q ss_pred CCcEEEEcC-ChHHHHHHHHHHHcCCce------EEEEeCC
Q 013180 84 GSYVVVIGL-GGVGSHAAAMLLRSGVGR------LLLVDFD 117 (448)
Q Consensus 84 ~~~VlVVG~-GGvGs~va~~LarsGVg~------i~LiD~D 117 (448)
-.||.|||+ |.||+.+|..|+..|+-. |.|+|.|
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD 84 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSE 84 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccC
Confidence 368999999 999999999999999854 6666554
No 418
>TIGR01746 Thioester-redct thioester reductase domain. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.
Probab=87.69 E-value=6.9 Score=39.02 Aligned_cols=30 Identities=23% Similarity=0.360 Sum_probs=24.3
Q ss_pred cEEEEcC-ChHHHHHHHHHHHcCC-ceEEEEe
Q 013180 86 YVVVIGL-GGVGSHAAAMLLRSGV-GRLLLVD 115 (448)
Q Consensus 86 ~VlVVG~-GGvGs~va~~LarsGV-g~i~LiD 115 (448)
+|+|.|+ |++|+++++.|+..|- .++..+.
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~ 32 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLV 32 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCCEEEEEE
Confidence 5889987 9999999999999984 3566643
No 419
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=87.68 E-value=0.69 Score=47.50 Aligned_cols=35 Identities=34% Similarity=0.400 Sum_probs=30.9
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCcc
Q 013180 84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQV 119 (448)
Q Consensus 84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V 119 (448)
...|+|||+|-+|+.+|..|++.|+ +++|+|.+..
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~~G~-~v~liE~~~~ 41 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALARAGA-SVALVAPEPP 41 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCC-eEEEEeCCCC
Confidence 4579999999999999999999997 5999998753
No 420
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=87.68 E-value=3.5 Score=46.09 Aligned_cols=35 Identities=40% Similarity=0.584 Sum_probs=31.1
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180 83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ 118 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~ 118 (448)
..++|+|||+|..|..+|..|++.|. +++|+|...
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~-~Vtv~e~~~ 226 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGH-DVTIFDANE 226 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Confidence 45799999999999999999999996 599998653
No 421
>PRK07454 short chain dehydrogenase; Provisional
Probab=87.61 E-value=3.9 Score=38.69 Aligned_cols=33 Identities=24% Similarity=0.380 Sum_probs=27.5
Q ss_pred CCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 84 GSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 84 ~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
.++++|.|+ |++|..+++.|++.|. ++.++|.+
T Consensus 6 ~k~vlItG~sg~iG~~la~~l~~~G~-~V~~~~r~ 39 (241)
T PRK07454 6 MPRALITGASSGIGKATALAFAKAGW-DLALVARS 39 (241)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 467889986 9999999999999997 68886653
No 422
>PLN02928 oxidoreductase family protein
Probab=87.60 E-value=0.71 Score=47.58 Aligned_cols=106 Identities=19% Similarity=0.237 Sum_probs=62.3
Q ss_pred HHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEE
Q 013180 80 QKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK 159 (448)
Q Consensus 80 ~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~ 159 (448)
..|.+++|.|||+|.+|..+|+.|...|. ++..+|... .+.. ....| .|...+...
T Consensus 155 ~~l~gktvGIiG~G~IG~~vA~~l~afG~-~V~~~dr~~------~~~~---~~~~~--------------~~~~~~~~~ 210 (347)
T PLN02928 155 DTLFGKTVFILGYGAIGIELAKRLRPFGV-KLLATRRSW------TSEP---EDGLL--------------IPNGDVDDL 210 (347)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECCCC------Chhh---hhhhc--------------ccccccccc
Confidence 36899999999999999999999999997 677766420 0000 00000 000000000
Q ss_pred -eccCCccchHHHhcCCCCeEEEccC-CHHHHHHHHHHHHH---cCCcEEEEcCCCC
Q 013180 160 -VLLYDASSEEEILSGHPDFVLDCID-NIDTKVALLAACVR---RGLKVLCATGAGA 211 (448)
Q Consensus 160 -~~~~~~~~~~~ll~~~~D~VIda~D-n~~~r~~l~~~c~~---~~ip~I~~~g~G~ 211 (448)
.......+.++++.. +|+|+.+.- +.+++..+++.... .+.-+|+. +-|.
T Consensus 211 ~~~~~~~~~L~ell~~-aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINv-aRG~ 265 (347)
T PLN02928 211 VDEKGGHEDIYEFAGE-ADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNI-ARGG 265 (347)
T ss_pred ccccCcccCHHHHHhh-CCEEEECCCCChHhhcccCHHHHhcCCCCeEEEEC-CCcc
Confidence 011133467788876 999998885 66777777653332 33335553 3443
No 423
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=87.58 E-value=3.2 Score=39.30 Aligned_cols=35 Identities=20% Similarity=0.495 Sum_probs=28.5
Q ss_pred hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
|++++++|.|+ |++|+.+++.|+..|. ++.++|.+
T Consensus 1 ~~~~~ilItGas~~iG~~la~~l~~~g~-~v~~~~r~ 36 (250)
T TIGR03206 1 LKDKTAIVTGGGGGIGGATCRRFAEEGA-KVAVFDLN 36 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecCC
Confidence 46789999985 8899999999999986 46665543
No 424
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=87.58 E-value=0.71 Score=51.52 Aligned_cols=33 Identities=30% Similarity=0.384 Sum_probs=30.4
Q ss_pred CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180 85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ 118 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~ 118 (448)
..|+|||.|-+|+.+|..|++.|. +++|+|.+.
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~G~-~V~VlE~~~ 293 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARRGW-QVTLYEADE 293 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHCCC-eEEEEecCC
Confidence 589999999999999999999997 599999874
No 425
>PRK06545 prephenate dehydrogenase; Validated
Probab=87.57 E-value=1.7 Score=44.90 Aligned_cols=32 Identities=25% Similarity=0.590 Sum_probs=27.7
Q ss_pred CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
.+|.|||+|-+|+.++..|.+.|. .+.++|.|
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~-~v~i~~~~ 32 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGP-DVFIIGYD 32 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCC-CeEEEEeC
Confidence 369999999999999999999997 56777665
No 426
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=87.53 E-value=0.69 Score=47.24 Aligned_cols=32 Identities=28% Similarity=0.384 Sum_probs=27.9
Q ss_pred CcEEEEcC-ChHHHHHHHHHHHcCC-c-----eEEEEeC
Q 013180 85 SYVVVIGL-GGVGSHAAAMLLRSGV-G-----RLLLVDF 116 (448)
Q Consensus 85 ~~VlVVG~-GGvGs~va~~LarsGV-g-----~i~LiD~ 116 (448)
.||.|||+ |.||+.+|..|+..|+ + +|.|+|-
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di 42 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDI 42 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEec
Confidence 58999999 9999999999999987 4 5888765
No 427
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=87.50 E-value=0.71 Score=47.13 Aligned_cols=34 Identities=21% Similarity=0.303 Sum_probs=29.8
Q ss_pred CcEEEEcC-ChHHHHHHHHHHHcCCce------EEEEeCCc
Q 013180 85 SYVVVIGL-GGVGSHAAAMLLRSGVGR------LLLVDFDQ 118 (448)
Q Consensus 85 ~~VlVVG~-GGvGs~va~~LarsGVg~------i~LiD~D~ 118 (448)
.||.|+|+ |.+|+.++..|+..|+-. |.|+|-+.
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~ 41 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPP 41 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCC
Confidence 37999999 999999999999988765 99998753
No 428
>PRK07856 short chain dehydrogenase; Provisional
Probab=87.49 E-value=2.3 Score=40.67 Aligned_cols=36 Identities=25% Similarity=0.454 Sum_probs=30.5
Q ss_pred hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180 82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQ 118 (448)
Q Consensus 82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~ 118 (448)
+++++++|.|+ ||+|..+++.|+..|. ++.++|.+.
T Consensus 4 ~~~k~~lItGas~gIG~~la~~l~~~g~-~v~~~~r~~ 40 (252)
T PRK07856 4 LTGRVVLVTGGTRGIGAGIARAFLAAGA-TVVVCGRRA 40 (252)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCh
Confidence 66889999986 7999999999999997 588877653
No 429
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=87.46 E-value=7.3 Score=37.73 Aligned_cols=31 Identities=16% Similarity=0.360 Sum_probs=25.0
Q ss_pred EEEEc-CChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180 87 VVVIG-LGGVGSHAAAMLLRSGVGRLLLVDFDQ 118 (448)
Q Consensus 87 VlVVG-~GGvGs~va~~LarsGVg~i~LiD~D~ 118 (448)
|+|.| +|-+|+++++.|+..|. +++.++.+.
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~ 32 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDGH-EVTILTRSP 32 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcCC-EEEEEeCCC
Confidence 56776 58899999999999995 688777654
No 430
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=87.45 E-value=4.4 Score=33.52 Aligned_cols=90 Identities=16% Similarity=0.212 Sum_probs=53.2
Q ss_pred hCCcEEEEcCChHHHHHHHH-HHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180 83 SGSYVVVIGLGGVGSHAAAM-LLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL 161 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~-LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~ 161 (448)
++.+|+|+|+|++|..++.. ....|.+-..++|.|.= .+.+... .+..+.
T Consensus 2 k~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~---~~G~~i~-------------------------gipV~~- 52 (96)
T PF02629_consen 2 KKTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPE---KIGKEIG-------------------------GIPVYG- 52 (96)
T ss_dssp TTEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTT---TTTSEET-------------------------TEEEES-
T ss_pred CCCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCC---ccCcEEC-------------------------CEEeec-
Confidence 46789999999999988753 34668888888887632 2222211 122221
Q ss_pred cCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEE
Q 013180 162 LYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCA 206 (448)
Q Consensus 162 ~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~ 206 (448)
+-+.+.+.. + .|+.|-|+..........+++ +.|++-|..
T Consensus 53 --~~~~l~~~~-~-i~iaii~VP~~~a~~~~~~~~-~~gIk~i~n 92 (96)
T PF02629_consen 53 --SMDELEEFI-E-IDIAIITVPAEAAQEVADELV-EAGIKGIVN 92 (96)
T ss_dssp --SHHHHHHHC-T-TSEEEEES-HHHHHHHHHHHH-HTT-SEEEE
T ss_pred --cHHHhhhhh-C-CCEEEEEcCHHHHHHHHHHHH-HcCCCEEEE
Confidence 222334444 3 888888886655554544444 478777664
No 431
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=87.35 E-value=5.4 Score=41.01 Aligned_cols=34 Identities=41% Similarity=0.635 Sum_probs=30.2
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
+.+|+|.|+|++|..++..+...|+.++..+|.+
T Consensus 191 g~~VlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~ 224 (373)
T cd08299 191 GSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDIN 224 (373)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 5789999999999999999999999888888764
No 432
>PRK06184 hypothetical protein; Provisional
Probab=87.33 E-value=0.71 Score=49.54 Aligned_cols=34 Identities=29% Similarity=0.464 Sum_probs=30.3
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
.+..|+|||+|.+|..+|..|++.|+. ++|+|..
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~Gi~-v~viE~~ 35 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARRGVS-FRLIEKA 35 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCc-EEEEeCC
Confidence 356899999999999999999999995 9999854
No 433
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=87.30 E-value=0.87 Score=43.33 Aligned_cols=34 Identities=24% Similarity=0.359 Sum_probs=29.2
Q ss_pred hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeC
Q 013180 82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF 116 (448)
Q Consensus 82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~ 116 (448)
|++++|+|.|+ ||+|..+++.|+..|. ++.+++.
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~-~vi~~~r 37 (248)
T TIGR01832 3 LEGKVALVTGANTGLGQGIAVGLAEAGA-DIVGAGR 37 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcC
Confidence 67899999998 7999999999999997 5777553
No 434
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.29 E-value=2.2 Score=45.08 Aligned_cols=33 Identities=27% Similarity=0.526 Sum_probs=28.8
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
+..|+|+|+||.|-.+|..|...|. +++..|..
T Consensus 6 ~~~~~v~G~G~sG~s~a~~L~~~G~-~v~~~D~~ 38 (448)
T PRK03803 6 DGLHIVVGLGKTGLSVVRFLARQGI-PFAVMDSR 38 (448)
T ss_pred CCeEEEEeecHhHHHHHHHHHhCCC-eEEEEeCC
Confidence 4579999999999999999999997 58888854
No 435
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=87.27 E-value=0.72 Score=47.54 Aligned_cols=35 Identities=29% Similarity=0.382 Sum_probs=31.3
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCcc
Q 013180 84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQV 119 (448)
Q Consensus 84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V 119 (448)
...|+|||+|-+|..+|..|++.|+. ++|+|....
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~~G~~-v~liE~~~~ 40 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALADAGLS-VALVEGREP 40 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCE-EEEEeCCCC
Confidence 46799999999999999999999986 999998653
No 436
>PRK09330 cell division protein FtsZ; Validated
Probab=87.21 E-value=3.4 Score=43.26 Aligned_cols=108 Identities=19% Similarity=0.278 Sum_probs=62.9
Q ss_pred hhCCcEEEEcCChHHHHHHHHHHHcCCc--eEEEEeCCc--cccCCCcccccccCCc---cC---chHHHHHHHHHhhhC
Q 013180 82 VSGSYVVVIGLGGVGSHAAAMLLRSGVG--RLLLVDFDQ--VSVSSLNRHAVATRAD---VG---TPKALCLKKHFSSIF 151 (448)
Q Consensus 82 L~~~~VlVVG~GGvGs~va~~LarsGVg--~i~LiD~D~--V~~sNLnRq~l~~~~d---vG---~~Kv~~~~~~l~~in 151 (448)
-...+|-|||+||-|+.++.+|.+.|+. .+..++.|. +..++..+-.+....- .| .|. .-++...+
T Consensus 11 ~~~~~IkViGvGG~G~Nav~~m~~~~~~~v~fia~NTD~q~L~~~~a~~ki~lG~~~t~GlGaG~~pe--~G~~aaee-- 86 (384)
T PRK09330 11 NQGAVIKVIGVGGGGGNAVNRMIEEGIQGVEFIAANTDAQALLKSKAPVKIQLGEKLTRGLGAGANPE--VGRKAAEE-- 86 (384)
T ss_pred ccCCeEEEEEECCcHHHHHHHHHHcCCCCceEEEEeCcHHHHhcCCCCeEEEcCCcccccCCCCCCHH--HHHHHHHH--
Confidence 4467899999999999999999999876 456667776 3333333333332210 11 111 11111110
Q ss_pred CCceEEEEeccCCccchHHHhcCCCCeEEEccC------CHHHHHHHHHHHHHcCCcEEEEc
Q 013180 152 PECHIDAKVLLYDASSEEEILSGHPDFVLDCID------NIDTKVALLAACVRRGLKVLCAT 207 (448)
Q Consensus 152 P~v~v~~~~~~~~~~~~~~ll~~~~D~VIda~D------n~~~r~~l~~~c~~~~ip~I~~~ 207 (448)
..+...+.+.+ +|.|+-+.. +-.+. .+.+++++++++.+...
T Consensus 87 ------------~~e~I~~~l~~-~D~vfI~AGmGGGTGTGaap-vIA~iake~g~ltvaVv 134 (384)
T PRK09330 87 ------------SREEIREALEG-ADMVFITAGMGGGTGTGAAP-VVAEIAKELGILTVAVV 134 (384)
T ss_pred ------------HHHHHHHHHcC-CCEEEEEecCCCcccHHHHH-HHHHHHHHcCCcEEEEE
Confidence 01112334444 887775433 33344 68899999998877754
No 437
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=87.19 E-value=4.7 Score=41.45 Aligned_cols=163 Identities=25% Similarity=0.338 Sum_probs=87.5
Q ss_pred HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe
Q 013180 81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV 160 (448)
Q Consensus 81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~ 160 (448)
.|..+.+.|+|.|-+||++|..+-..| .++.. .|.+.+....+.+ .++.
T Consensus 143 el~GKTLgvlG~GrIGseVA~r~k~~g-m~vI~--~dpi~~~~~~~a~------------------------gvq~---- 191 (406)
T KOG0068|consen 143 ELRGKTLGVLGLGRIGSEVAVRAKAMG-MHVIG--YDPITPMALAEAF------------------------GVQL---- 191 (406)
T ss_pred EEeccEEEEeecccchHHHHHHHHhcC-ceEEe--ecCCCchHHHHhc------------------------ccee----
Confidence 478999999999999999999876666 44444 3444332222211 1111
Q ss_pred ccCCccchHHHhcCCCCeEEEcc-CCHHHHHHHHH---HHHHcCCcEEEEcCCCCccCCCceEEcccccccCChhhHHHH
Q 013180 161 LLYDASSEEEILSGHPDFVLDCI-DNIDTKVALLA---ACVRRGLKVLCATGAGARADPTRIRVADLRESTNDPLSRAVM 236 (448)
Q Consensus 161 ~~~~~~~~~~ll~~~~D~VIda~-Dn~~~r~~l~~---~c~~~~ip~I~~~g~G~k~dpt~i~i~di~~~~~dpl~~~~r 236 (448)
-..++++.. .|+|---+ -.++++..+|+ +..+.|..+|+.+ -|+-.| .+.|.+++.
T Consensus 192 -----vsl~Eil~~-ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN~a-RGGvVD-------------e~ALv~Al~ 251 (406)
T KOG0068|consen 192 -----VSLEEILPK-ADFITLHVPLTPSTEKLLNDETFAKMKKGVRIINVA-RGGVVD-------------EPALVRALD 251 (406)
T ss_pred -----eeHHHHHhh-cCEEEEccCCCcchhhccCHHHHHHhhCCcEEEEec-CCceec-------------hHHHHHHHh
Confidence 123444443 66654322 34555555553 2346899999965 333322 234444432
Q ss_pred HHHhhhcCccCCee-EEeCCCCCcccCCCCCCCCCCCCCCCCCCccCCcccccCCcccchHHHHHHHHHHHHHHHHHcC
Q 013180 237 HRLRKDYGIEGGIP-VVFSLEKPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGSIPAIFGMVMASHVVTQLAER 314 (448)
Q Consensus 237 ~~l~~~~g~~g~i~-~v~s~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvlg~~~~i~G~~~A~~vi~~l~g~ 314 (448)
.|..+|-. -||+.|+|..... .++-.+|+ +-..|=+|..+.-.-.-+|.|+.+.+.++
T Consensus 252 ------sG~vaGaAlDVy~~Epp~~~~~------------~~Lv~hpn--Vi~TpHlgasT~EAq~~iaievaea~~~~ 310 (406)
T KOG0068|consen 252 ------SGQVAGAALDVYPEEPPKNGWD------------SELVSHPN--VIVTPHLGASTEEAQSRIAIEVAEAVSDY 310 (406)
T ss_pred ------cCcccceeeecccCCCCccchh------------HHHhcCCc--eeecCccccchHHHHHHHHHHHHHHHHHH
Confidence 45555443 3788887753100 00111222 22346677544444444777777776664
No 438
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=87.18 E-value=0.8 Score=47.87 Aligned_cols=36 Identities=25% Similarity=0.304 Sum_probs=31.6
Q ss_pred HHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeC
Q 013180 80 QKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDF 116 (448)
Q Consensus 80 ~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~ 116 (448)
..|++++|.|||+|.+|+.+++.|...|+. +..+|+
T Consensus 112 ~~l~gktvGIIG~G~IG~~va~~l~a~G~~-V~~~Dp 147 (381)
T PRK00257 112 VDLAERTYGVVGAGHVGGRLVRVLRGLGWK-VLVCDP 147 (381)
T ss_pred CCcCcCEEEEECCCHHHHHHHHHHHHCCCE-EEEECC
Confidence 368999999999999999999999999974 666665
No 439
>PRK08818 prephenate dehydrogenase; Provisional
Probab=87.18 E-value=3.6 Score=42.86 Aligned_cols=35 Identities=20% Similarity=0.179 Sum_probs=28.7
Q ss_pred hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeC
Q 013180 82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF 116 (448)
Q Consensus 82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~ 116 (448)
+...+|+|||+ |-+|..++..|-...-.+|+.+|.
T Consensus 2 ~~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~ 37 (370)
T PRK08818 2 IAQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDP 37 (370)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcC
Confidence 45679999999 999999999999654346777776
No 440
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=87.18 E-value=6.7 Score=38.45 Aligned_cols=61 Identities=33% Similarity=0.376 Sum_probs=42.2
Q ss_pred cEEEEcCChHHHHHHH-----HHHHcCCceEEEEeCCccccCCCcccccccC--CccCchHHHHHHHHHhh
Q 013180 86 YVVVIGLGGVGSHAAA-----MLLRSGVGRLLLVDFDQVSVSSLNRHAVATR--ADVGTPKALCLKKHFSS 149 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~-----~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~--~dvG~~Kv~~~~~~l~~ 149 (448)
+|.|.|=||+|-.... .|..-|-.++..||.|. -.||.++.-... ..+|. |-+.++++...
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDp--d~nL~~~LGve~~~~~lg~-~~e~~~k~~~a 69 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADP--DSNLPEALGVEEPMKYLGG-KRELLKKRTGA 69 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCC--CCChHHhcCCCCCCccccc-HHHHHHHHhcc
Confidence 6899999999965443 33444547899999998 889999976543 34565 33455555444
No 441
>PRK06046 alanine dehydrogenase; Validated
Probab=87.16 E-value=3.6 Score=41.94 Aligned_cols=77 Identities=17% Similarity=0.188 Sum_probs=52.7
Q ss_pred hCCcEEEEcCChHHHHHHHHHH-HcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180 83 SGSYVVVIGLGGVGSHAAAMLL-RSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL 161 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~La-rsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~ 161 (448)
...+|.|+|+|+.|.+.+.+|. ..++..+.++|.+. .+++.+++++.+..+ +++..+.
T Consensus 128 ~~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~-------------------~~~~~~~~~~~~~~~-~~v~~~~- 186 (326)
T PRK06046 128 DSKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTK-------------------SSAEKFVERMSSVVG-CDVTVAE- 186 (326)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCH-------------------HHHHHHHHHHHhhcC-ceEEEeC-
Confidence 4578999999999999999998 45788888866552 355555565554333 3343322
Q ss_pred cCCccchHHHhcCCCCeEEEccCCHH
Q 013180 162 LYDASSEEEILSGHPDFVLDCIDNID 187 (448)
Q Consensus 162 ~~~~~~~~~ll~~~~D~VIda~Dn~~ 187 (448)
+.++.+. .|+|+.||-+..
T Consensus 187 -----~~~~~l~--aDiVv~aTps~~ 205 (326)
T PRK06046 187 -----DIEEACD--CDILVTTTPSRK 205 (326)
T ss_pred -----CHHHHhh--CCEEEEecCCCC
Confidence 3455553 899999998743
No 442
>PRK07102 short chain dehydrogenase; Provisional
Probab=87.14 E-value=13 Score=35.13 Aligned_cols=32 Identities=25% Similarity=0.407 Sum_probs=26.9
Q ss_pred CcEEEEc-CChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 85 SYVVVIG-LGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 85 ~~VlVVG-~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
++|+|.| .||+|..+++.|+..|. ++.++|.+
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G~-~Vi~~~r~ 34 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAGA-RLYLAARD 34 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCC-EEEEEeCC
Confidence 4788887 59999999999999996 57777765
No 443
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=87.12 E-value=0.74 Score=47.02 Aligned_cols=32 Identities=34% Similarity=0.432 Sum_probs=28.6
Q ss_pred cEEEEcC-ChHHHHHHHHHHHcCCc------eEEEEeCC
Q 013180 86 YVVVIGL-GGVGSHAAAMLLRSGVG------RLLLVDFD 117 (448)
Q Consensus 86 ~VlVVG~-GGvGs~va~~LarsGVg------~i~LiD~D 117 (448)
||.|+|+ |.||+.++..|+..|+- .|.|+|-.
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~ 39 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIP 39 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecC
Confidence 6999999 99999999999998886 59999863
No 444
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=87.05 E-value=0.84 Score=45.93 Aligned_cols=33 Identities=33% Similarity=0.451 Sum_probs=29.6
Q ss_pred CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180 85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ 118 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~ 118 (448)
.+|.|||+|-.|+.+|.+|+..|. +++++|.+.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~-~V~v~d~~~ 35 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGH-EVRLWDADP 35 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCC-eeEEEeCCH
Confidence 369999999999999999999997 699998774
No 445
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=87.05 E-value=0.56 Score=52.80 Aligned_cols=33 Identities=21% Similarity=0.389 Sum_probs=28.7
Q ss_pred CcEEEEcCChHHHHHHHHHH-HcCCceEEEEeCCc
Q 013180 85 SYVVVIGLGGVGSHAAAMLL-RSGVGRLLLVDFDQ 118 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~La-rsGVg~i~LiD~D~ 118 (448)
++|.|||+|-.|+.+|..++ ++|+ .++|+|.+.
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~-~V~l~d~~~ 338 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGI-PVRIKDINP 338 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCC-eEEEEeCCH
Confidence 47999999999999999998 5896 589999773
No 446
>PRK06182 short chain dehydrogenase; Validated
Probab=87.04 E-value=2.4 Score=41.12 Aligned_cols=34 Identities=21% Similarity=0.259 Sum_probs=27.6
Q ss_pred hCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 83 SGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 83 ~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
++++|+|.|+ ||+|.++++.|+..|. ++.+++.+
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~ 36 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGY-TVYGAARR 36 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence 4678999986 8999999999999996 46665543
No 447
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=87.04 E-value=3.7 Score=48.29 Aligned_cols=97 Identities=16% Similarity=0.110 Sum_probs=54.9
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180 83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL 162 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~ 162 (448)
++++|+|||.|..|-.+|..|++.|. +++|+|....--.-|+..+ ...-.++.-++...+.+.+.+ +++..-. .
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~-~VtV~E~~~~~GG~l~~gi--p~~rl~~e~~~~~~~~l~~~G--v~~~~~~-~ 502 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGV-DVTVYEALHVVGGVLQYGI--PSFRLPRDIIDREVQRLVDIG--VKIETNK-V 502 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEecCCCCcceeeccC--CccCCCHHHHHHHHHHHHHCC--CEEEeCC-c
Confidence 46899999999999999999999997 6999986532111111110 111112222333444455443 4443321 1
Q ss_pred CCcc-chHHHh-cCCCCeEEEccCC
Q 013180 163 YDAS-SEEEIL-SGHPDFVLDCIDN 185 (448)
Q Consensus 163 ~~~~-~~~~ll-~~~~D~VIda~Dn 185 (448)
+..+ ..+++. ...||.||-|+..
T Consensus 503 vg~~~~~~~l~~~~~yDaViIATGa 527 (1006)
T PRK12775 503 IGKTFTVPQLMNDKGFDAVFLGVGA 527 (1006)
T ss_pred cCCccCHHHHhhccCCCEEEEecCC
Confidence 2222 234443 2349999998875
No 448
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=87.00 E-value=0.9 Score=48.72 Aligned_cols=37 Identities=35% Similarity=0.575 Sum_probs=33.0
Q ss_pred HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180 81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ 118 (448)
Q Consensus 81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~ 118 (448)
.|.+++|+|+|+|.+|..+|+.|...|. +++++|.|.
T Consensus 251 ~LaGKtVgVIG~G~IGr~vA~rL~a~Ga-~ViV~e~dp 287 (476)
T PTZ00075 251 MIAGKTVVVCGYGDVGKGCAQALRGFGA-RVVVTEIDP 287 (476)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence 4789999999999999999999999998 588877663
No 449
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=86.95 E-value=0.92 Score=45.23 Aligned_cols=33 Identities=33% Similarity=0.487 Sum_probs=29.2
Q ss_pred CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180 85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ 118 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~ 118 (448)
++|.|||+|-.|+.+|..|+.+|. +++++|.+.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 37 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGM-DVWLLDSDP 37 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCH
Confidence 579999999999999999999995 688888653
No 450
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=86.94 E-value=0.74 Score=47.68 Aligned_cols=34 Identities=35% Similarity=0.488 Sum_probs=30.4
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180 84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ 118 (448)
Q Consensus 84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~ 118 (448)
...|+|||+|-+|+.+|..|++.|+ +++|+|...
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~-~v~viE~~~ 35 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGL-EVLLLDGGP 35 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCC-EEEEEcCCC
Confidence 3579999999999999999999997 589999775
No 451
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=86.87 E-value=0.87 Score=41.93 Aligned_cols=38 Identities=37% Similarity=0.578 Sum_probs=29.2
Q ss_pred HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCcc
Q 013180 81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQV 119 (448)
Q Consensus 81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V 119 (448)
-|..++++|+|.|-+|.-+|..|...| -++++.|-|.+
T Consensus 20 ~l~Gk~vvV~GYG~vG~g~A~~lr~~G-a~V~V~e~DPi 57 (162)
T PF00670_consen 20 MLAGKRVVVIGYGKVGKGIARALRGLG-ARVTVTEIDPI 57 (162)
T ss_dssp --TTSEEEEE--SHHHHHHHHHHHHTT--EEEEE-SSHH
T ss_pred eeCCCEEEEeCCCcccHHHHHHHhhCC-CEEEEEECChH
Confidence 577899999999999999999999999 56899888853
No 452
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=86.86 E-value=3.6 Score=48.27 Aligned_cols=35 Identities=31% Similarity=0.427 Sum_probs=31.1
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180 83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ 118 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~ 118 (448)
..++|+|||.|..|-.+|..|++.|. +++|+|...
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~-~VTV~Ek~~ 570 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGH-PVTVFEKKE 570 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-eEEEEeccc
Confidence 35789999999999999999999996 699999754
No 453
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=86.80 E-value=4.1 Score=39.31 Aligned_cols=34 Identities=21% Similarity=0.435 Sum_probs=28.3
Q ss_pred HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEe
Q 013180 81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVD 115 (448)
Q Consensus 81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD 115 (448)
++++++++|.|+ ||+|..+++.|+..|.. +.++|
T Consensus 7 ~~~~k~~lItGa~~~iG~~ia~~l~~~G~~-vv~~~ 41 (265)
T PRK07097 7 SLKGKIALITGASYGIGFAIAKAYAKAGAT-IVFND 41 (265)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEe
Confidence 467788999976 79999999999999975 66654
No 454
>PRK12744 short chain dehydrogenase; Provisional
Probab=86.78 E-value=4.1 Score=39.07 Aligned_cols=33 Identities=21% Similarity=0.360 Sum_probs=26.9
Q ss_pred HhhCCcEEEEc-CChHHHHHHHHHHHcCCceEEE
Q 013180 81 KVSGSYVVVIG-LGGVGSHAAAMLLRSGVGRLLL 113 (448)
Q Consensus 81 kL~~~~VlVVG-~GGvGs~va~~LarsGVg~i~L 113 (448)
.|++++|+|.| .||+|..+++.|+..|...+.+
T Consensus 5 ~l~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i 38 (257)
T PRK12744 5 SLKGKVVLIAGGAKNLGGLIARDLAAQGAKAVAI 38 (257)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCCcEEEE
Confidence 46678999997 5799999999999999764433
No 455
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=86.78 E-value=0.88 Score=45.67 Aligned_cols=34 Identities=32% Similarity=0.461 Sum_probs=29.4
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCC-ceEEEEeCC
Q 013180 84 GSYVVVIGLGGVGSHAAAMLLRSGV-GRLLLVDFD 117 (448)
Q Consensus 84 ~~~VlVVG~GGvGs~va~~LarsGV-g~i~LiD~D 117 (448)
..+|.|||+|.+|..++..|.+.|. .++.++|.+
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~ 40 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRS 40 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 3679999999999999999999997 478887764
No 456
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=86.77 E-value=2.6 Score=42.17 Aligned_cols=113 Identities=19% Similarity=0.264 Sum_probs=62.6
Q ss_pred CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccCC
Q 013180 85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYD 164 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~~ 164 (448)
.+|.|||+|-+|+.++.+|++.|. +++++|.+.=....+.. .|...+....+.+. .+++....-. +
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~-~V~v~d~~~~~~~~~~~--------~g~~~~~s~~~~~~----~aDvVi~~vp-~ 67 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGH-QLQVFDVNPQAVDALVD--------KGATPAASPAQAAA----GAEFVITMLP-N 67 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHH--------cCCcccCCHHHHHh----cCCEEEEecC-C
Confidence 379999999999999999999995 68888875332222211 12212222222221 2222222111 1
Q ss_pred ccchHHH-------hc--CCCCeEEEccC-CHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 013180 165 ASSEEEI-------LS--GHPDFVLDCID-NIDTKVALLAACVRRGLKVLCATGAGA 211 (448)
Q Consensus 165 ~~~~~~l-------l~--~~~D~VIda~D-n~~~r~~l~~~c~~~~ip~I~~~g~G~ 211 (448)
....... +. .+-.+|||++. ++.+...+.+.+.+.++.++++--.|+
T Consensus 68 ~~~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~ldapV~g~ 124 (296)
T PRK15461 68 GDLVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGRT 124 (296)
T ss_pred HHHHHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEEccCCCC
Confidence 1111111 11 11346677665 455667777888888888888766554
No 457
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=86.77 E-value=4.2 Score=38.13 Aligned_cols=29 Identities=31% Similarity=0.471 Sum_probs=24.7
Q ss_pred hhCCcEEEEcC-ChHHHHHHHHHHHcCCce
Q 013180 82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGR 110 (448)
Q Consensus 82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~ 110 (448)
+..++|+|+|+ |++|+.+++.|+..|..-
T Consensus 4 ~~~~~vlItGasg~iG~~l~~~l~~~g~~v 33 (249)
T PRK12825 4 LMGRVALVTGAARGLGRAIALRLARAGADV 33 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCeE
Confidence 45678999975 999999999999999853
No 458
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=86.69 E-value=7.7 Score=39.58 Aligned_cols=35 Identities=40% Similarity=0.550 Sum_probs=30.6
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
.+.+|+|.|+|++|..++..+...|+.++..+|.+
T Consensus 184 ~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~ 218 (365)
T cd08277 184 PGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDIN 218 (365)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 46899999999999999998889998888887764
No 459
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=86.65 E-value=4.2 Score=43.16 Aligned_cols=34 Identities=35% Similarity=0.494 Sum_probs=30.4
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
..++|+|||.|..|..+|..|++.|. +++|+|..
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~g~-~V~lie~~ 172 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGY-DVTIFEAR 172 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEccC
Confidence 46799999999999999999999995 69998865
No 460
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.63 E-value=2 Score=45.17 Aligned_cols=35 Identities=34% Similarity=0.517 Sum_probs=30.9
Q ss_pred hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
+.+++|.|+|.|+.|-.++..|.+.|. +++..|.+
T Consensus 4 ~~~~~i~v~G~G~sG~s~~~~l~~~G~-~v~~~D~~ 38 (438)
T PRK03806 4 YQGKKVVIIGLGLTGLSCVDFFLARGV-TPRVIDTR 38 (438)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCC-eEEEEcCC
Confidence 457889999999999999999999996 68888865
No 461
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=86.62 E-value=0.82 Score=47.69 Aligned_cols=31 Identities=32% Similarity=0.497 Sum_probs=28.2
Q ss_pred cEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
+|+|||+|..|+.+|..|++.|+. +.|+|..
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G~~-V~llE~~ 32 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAGIQ-TFLLERK 32 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCc-EEEEecC
Confidence 699999999999999999999975 8888854
No 462
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=86.58 E-value=0.81 Score=46.67 Aligned_cols=34 Identities=21% Similarity=0.211 Sum_probs=29.3
Q ss_pred CCcEEEEcC-ChHHHHHHHHHHHcCCc------eEEEEeCC
Q 013180 84 GSYVVVIGL-GGVGSHAAAMLLRSGVG------RLLLVDFD 117 (448)
Q Consensus 84 ~~~VlVVG~-GGvGs~va~~LarsGVg------~i~LiD~D 117 (448)
-.||.|+|+ |.||+.+|..|+..|+- +|.|+|-.
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~ 42 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELP 42 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecC
Confidence 358999999 99999999999988874 59998763
No 463
>PRK06841 short chain dehydrogenase; Provisional
Probab=86.51 E-value=1.1 Score=42.89 Aligned_cols=34 Identities=35% Similarity=0.567 Sum_probs=29.5
Q ss_pred hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeC
Q 013180 82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF 116 (448)
Q Consensus 82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~ 116 (448)
+++++|+|.|+ ||+|+++++.|+..|. ++.+++.
T Consensus 13 ~~~k~vlItGas~~IG~~la~~l~~~G~-~Vi~~~r 47 (255)
T PRK06841 13 LSGKVAVVTGGASGIGHAIAELFAAKGA-RVALLDR 47 (255)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence 67899999996 9999999999999997 5777664
No 464
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=86.48 E-value=5.4 Score=40.70 Aligned_cols=35 Identities=37% Similarity=0.550 Sum_probs=30.1
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
.+.+|+|.|+|++|..++..+...|+.++..+|.+
T Consensus 187 ~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~ 221 (369)
T cd08301 187 KGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLN 221 (369)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 46899999999999999999989998888777554
No 465
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=86.39 E-value=1.8 Score=42.14 Aligned_cols=36 Identities=28% Similarity=0.494 Sum_probs=30.4
Q ss_pred HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
.++++.++|.|+ ||+|.++++.|++.|. ++.++|.+
T Consensus 7 ~~~~k~vlVtGas~giG~~ia~~l~~~G~-~V~~~~r~ 43 (278)
T PRK08277 7 SLKGKVAVITGGGGVLGGAMAKELARAGA-KVAILDRN 43 (278)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 367888999986 8999999999999998 58777654
No 466
>PRK05717 oxidoreductase; Validated
Probab=86.37 E-value=1.4 Score=42.28 Aligned_cols=36 Identities=33% Similarity=0.547 Sum_probs=30.0
Q ss_pred HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
.+++++|+|.|. |++|+++++.|++.|. ++.++|.+
T Consensus 7 ~~~~k~vlItG~sg~IG~~~a~~l~~~g~-~v~~~~~~ 43 (255)
T PRK05717 7 GHNGRVALVTGAARGIGLGIAAWLIAEGW-QVVLADLD 43 (255)
T ss_pred ccCCCEEEEeCCcchHHHHHHHHHHHcCC-EEEEEcCC
Confidence 356788999986 8999999999999995 68887654
No 467
>PRK08309 short chain dehydrogenase; Provisional
Probab=86.30 E-value=5.2 Score=37.14 Aligned_cols=101 Identities=21% Similarity=0.248 Sum_probs=62.9
Q ss_pred cEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccC-C
Q 013180 86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY-D 164 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~-~ 164 (448)
+++|.|..|.|..++..|+..|. ++.+++.+ ..+++.+...+.. + -++..+...+ +
T Consensus 2 ~vlVtGGtG~gg~la~~L~~~G~-~V~v~~R~-------------------~~~~~~l~~~l~~--~-~~i~~~~~Dv~d 58 (177)
T PRK08309 2 HALVIGGTGMLKRVSLWLCEKGF-HVSVIARR-------------------EVKLENVKRESTT--P-ESITPLPLDYHD 58 (177)
T ss_pred EEEEECcCHHHHHHHHHHHHCcC-EEEEEECC-------------------HHHHHHHHHHhhc--C-CcEEEEEccCCC
Confidence 58999998999999999999996 46654432 1122222222221 1 2344443333 3
Q ss_pred ccchHHHh------cCCCCeEEEccCCHHHHHHHHHHHHHcCCc-----EEEEcCCC
Q 013180 165 ASSEEEIL------SGHPDFVLDCIDNIDTKVALLAACVRRGLK-----VLCATGAG 210 (448)
Q Consensus 165 ~~~~~~ll------~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip-----~I~~~g~G 210 (448)
.+....++ .+..|++|.++... ....+..+|.+.+++ +++-.|..
T Consensus 59 ~~sv~~~i~~~l~~~g~id~lv~~vh~~-~~~~~~~~~~~~gv~~~~~~~~h~~gs~ 114 (177)
T PRK08309 59 DDALKLAIKSTIEKNGPFDLAVAWIHSS-AKDALSVVCRELDGSSETYRLFHVLGSA 114 (177)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEEecccc-chhhHHHHHHHHccCCCCceEEEEeCCc
Confidence 33333332 13588999887664 567788999999988 88876654
No 468
>PRK06500 short chain dehydrogenase; Provisional
Probab=86.25 E-value=0.79 Score=43.48 Aligned_cols=36 Identities=25% Similarity=0.505 Sum_probs=29.9
Q ss_pred HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
++++++|+|.|+ |++|..+++.|+..|. ++.+++.+
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~-~v~~~~r~ 39 (249)
T PRK06500 3 RLQGKTALITGGTSGIGLETARQFLAEGA-RVAITGRD 39 (249)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCC
Confidence 467789999987 9999999999999997 57776543
No 469
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=86.25 E-value=1 Score=46.12 Aligned_cols=34 Identities=38% Similarity=0.412 Sum_probs=30.8
Q ss_pred CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCcc
Q 013180 85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQV 119 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V 119 (448)
..|+|||.|-.|..+|..|++.|+ +++|+|.+..
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~~G~-~v~v~E~~~~ 39 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQSGL-RVALLAPRAP 39 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHhCCC-eEEEEecCCC
Confidence 479999999999999999999997 6999997754
No 470
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=86.21 E-value=3.4 Score=42.73 Aligned_cols=50 Identities=28% Similarity=0.388 Sum_probs=36.0
Q ss_pred EEEEcCChHHHHHHHHH--HHcCCceEEEEeCCccccCCCcccccccCCccCc
Q 013180 87 VVVIGLGGVGSHAAAML--LRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGT 137 (448)
Q Consensus 87 VlVVG~GGvGs~va~~L--arsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~ 137 (448)
|+|||+|-.|+.+|..| ++.|. ++.|||...--.-.-++.-.+...+++.
T Consensus 2 viIvGaGpAGlslA~~l~~~~~g~-~Vllid~~~~~~~~~~~tW~~~~~~~~~ 53 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADARPGL-SVLLIDPKPKPPWPNDRTWCFWEKDLGP 53 (374)
T ss_pred EEEECCcHHHHHHHHHHHhcCCCC-EEEEEcCCccccccCCcccccccccccc
Confidence 79999999999999999 77774 7999998755422333433444555555
No 471
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=86.16 E-value=4.4 Score=38.89 Aligned_cols=36 Identities=22% Similarity=0.467 Sum_probs=29.4
Q ss_pred HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
+|++++|+|.|+ ||+|..+++.|+..|.. +.+++.+
T Consensus 12 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~-v~~~~~~ 48 (258)
T PRK06935 12 SLDGKVAIVTGGNTGLGQGYAVALAKAGAD-IIITTHG 48 (258)
T ss_pred cCCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCC
Confidence 477899999987 79999999999999975 5665443
No 472
>PRK08013 oxidoreductase; Provisional
Probab=86.12 E-value=0.95 Score=46.98 Aligned_cols=34 Identities=29% Similarity=0.306 Sum_probs=30.6
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180 84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ 118 (448)
Q Consensus 84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~ 118 (448)
+..|+|||+|-+|..+|..|++.|+. ++|+|...
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~-v~viE~~~ 36 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLR-VAVLEQRV 36 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCE-EEEEeCCC
Confidence 46899999999999999999999975 89999765
No 473
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=86.05 E-value=6 Score=36.18 Aligned_cols=88 Identities=18% Similarity=0.185 Sum_probs=56.4
Q ss_pred cEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccCCc
Q 013180 86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDA 165 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~~~ 165 (448)
+++|+|+|+.|-.++.+|-+.|..-+.++|.+.- +.++.+....=+|. .
T Consensus 1 ~~~I~Gag~~g~~~~~~l~~~g~~vvgfid~~~~----~~~~~i~g~pvlg~---------------------------~ 49 (201)
T TIGR03570 1 KLVIIGAGGHGRVVADIAEDSGWEIVGFLDDNPA----LQGTSVDGLPVLGG---------------------------D 49 (201)
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCEEEEEEcCCcc----ccCcccCCccEECC---------------------------H
Confidence 5899999999999999999999988889987732 22222221111121 0
Q ss_pred cchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEE
Q 013180 166 SSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLC 205 (448)
Q Consensus 166 ~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~ 205 (448)
+....+.. +.+.++-++.+...+..+.+.+...+.++..
T Consensus 50 ~~l~~~~~-~~~~~iiai~~~~~~~~i~~~l~~~g~~~~~ 88 (201)
T TIGR03570 50 EDLLRYPP-DEVDLVVAIGDNKLRRRLFEKLKAKGYRFAT 88 (201)
T ss_pred HHHhhhcc-cccEEEEEcCCHHHHHHHHHHHHhCCCcceE
Confidence 11111222 2466676776777788888888887776554
No 474
>PRK06057 short chain dehydrogenase; Provisional
Probab=86.03 E-value=1.1 Score=42.98 Aligned_cols=36 Identities=28% Similarity=0.510 Sum_probs=30.6
Q ss_pred HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
++++++|+|+|+ ||+|..+++.|+..|. ++.++|.+
T Consensus 4 ~~~~~~vlItGasggIG~~~a~~l~~~G~-~v~~~~r~ 40 (255)
T PRK06057 4 RLAGRVAVITGGGSGIGLATARRLAAEGA-TVVVGDID 40 (255)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCC
Confidence 477899999998 9999999999999995 57776643
No 475
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=86.03 E-value=0.85 Score=47.33 Aligned_cols=33 Identities=30% Similarity=0.333 Sum_probs=29.9
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
...|+|||+|-+|..+|..|++.|+. ++|+|..
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~-v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLR-IAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCE-EEEEcCC
Confidence 46899999999999999999999985 8999974
No 476
>PRK09126 hypothetical protein; Provisional
Probab=86.00 E-value=0.99 Score=46.35 Aligned_cols=35 Identities=31% Similarity=0.428 Sum_probs=31.0
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCcc
Q 013180 84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQV 119 (448)
Q Consensus 84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V 119 (448)
+..|+|||+|-.|+.+|..|++.|+. ++|+|....
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~-v~v~E~~~~ 37 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLK-VTLIERQPL 37 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCc-EEEEeCCCc
Confidence 56799999999999999999999985 889887654
No 477
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=85.93 E-value=4.7 Score=40.49 Aligned_cols=39 Identities=26% Similarity=0.456 Sum_probs=33.5
Q ss_pred CHHHHHHhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEE
Q 013180 75 GVESQQKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLL 113 (448)
Q Consensus 75 G~~~q~kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~L 113 (448)
+....++++++-|+|-|| .|+|.++|..|++.|.+-+.+
T Consensus 3 ~~~~~e~~~~kvVvITGASsGIG~~lA~~la~~G~~l~lv 42 (282)
T KOG1205|consen 3 GNLFMERLAGKVVLITGASSGIGEALAYELAKRGAKLVLV 42 (282)
T ss_pred ccccHHHhCCCEEEEeCCCcHHHHHHHHHHHhCCCceEEe
Confidence 345678999999999999 599999999999999875554
No 478
>PLN02256 arogenate dehydrogenase
Probab=85.88 E-value=1.1 Score=45.20 Aligned_cols=36 Identities=19% Similarity=0.361 Sum_probs=30.2
Q ss_pred HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
+-+..+|.|||+|.+|..++..|...|. ++..+|.+
T Consensus 33 ~~~~~kI~IIG~G~mG~slA~~L~~~G~-~V~~~d~~ 68 (304)
T PLN02256 33 KSRKLKIGIVGFGNFGQFLAKTFVKQGH-TVLATSRS 68 (304)
T ss_pred cCCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEECc
Confidence 4466789999999999999999999984 67777754
No 479
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=85.81 E-value=0.97 Score=46.80 Aligned_cols=34 Identities=35% Similarity=0.458 Sum_probs=30.4
Q ss_pred CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCcc
Q 013180 85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQV 119 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V 119 (448)
.+|+|||+|-.|..+|..|++.|+ +++|+|....
T Consensus 19 ~dV~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~ 52 (415)
T PRK07364 19 YDVAIVGGGIVGLTLAAALKDSGL-RIALIEAQPA 52 (415)
T ss_pred cCEEEECcCHHHHHHHHHHhcCCC-EEEEEecCCc
Confidence 569999999999999999999997 5999997653
No 480
>PRK06436 glycerate dehydrogenase; Provisional
Probab=85.81 E-value=0.69 Score=46.78 Aligned_cols=37 Identities=16% Similarity=0.325 Sum_probs=31.8
Q ss_pred HHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 80 QKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 80 ~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
..|.+++|.|+|+|.+|..+|+.|...|+ ++..+|..
T Consensus 118 ~~L~gktvgIiG~G~IG~~vA~~l~afG~-~V~~~~r~ 154 (303)
T PRK06436 118 KLLYNKSLGILGYGGIGRRVALLAKAFGM-NIYAYTRS 154 (303)
T ss_pred CCCCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCC
Confidence 57999999999999999999998887787 57777653
No 481
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=85.69 E-value=1.1 Score=46.48 Aligned_cols=33 Identities=30% Similarity=0.412 Sum_probs=29.8
Q ss_pred CcEEEEcCChHHHHHHHHHHHc--CCceEEEEeCCc
Q 013180 85 SYVVVIGLGGVGSHAAAMLLRS--GVGRLLLVDFDQ 118 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~Lars--GVg~i~LiD~D~ 118 (448)
..|+|||+|-+|+.+|..|++. |. +++|+|...
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~~g~-~V~llE~~~ 37 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERYPGA-RIAVLEKES 37 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhCCCC-eEEEEeCCC
Confidence 5799999999999999999998 74 799999864
No 482
>PRK07236 hypothetical protein; Provisional
Probab=85.67 E-value=1 Score=46.45 Aligned_cols=36 Identities=33% Similarity=0.342 Sum_probs=31.5
Q ss_pred hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180 82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ 118 (448)
Q Consensus 82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~ 118 (448)
+...+|+|||+|-.|..+|..|++.|+. ++|+|...
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~-v~v~E~~~ 39 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWD-VDVFERSP 39 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCC-EEEEecCC
Confidence 4567899999999999999999999985 89988653
No 483
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=85.67 E-value=0.99 Score=46.54 Aligned_cols=33 Identities=21% Similarity=0.294 Sum_probs=29.8
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
...|+|||.|-+|..+|..|++.|+ +++|+|..
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~-~v~l~E~~ 35 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGR-SVAVIEGG 35 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCC-cEEEEcCC
Confidence 3579999999999999999999997 69999965
No 484
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=85.56 E-value=1.9 Score=41.66 Aligned_cols=34 Identities=26% Similarity=0.490 Sum_probs=28.7
Q ss_pred hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeC
Q 013180 82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF 116 (448)
Q Consensus 82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~ 116 (448)
+++++++|.|+ ||+|..+++.|++.|. ++.++|.
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r 37 (262)
T TIGR03325 3 LKGEVVLVTGGASGLGRAIVDRFVAEGA-RVAVLDK 37 (262)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence 56889999987 7899999999999996 4777664
No 485
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=85.49 E-value=5 Score=39.55 Aligned_cols=94 Identities=16% Similarity=0.145 Sum_probs=64.8
Q ss_pred CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccC
Q 013180 84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY 163 (448)
Q Consensus 84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~ 163 (448)
..+|+|+|--+=+-.+++-|...+ +-+++ .+..+-|. +...++.| .....+.
T Consensus 2 ~~~ilvlGGT~Dar~la~~L~~~~-~~~~~----------------ss~t~~g~-------~l~~~~~~----~~~~G~l 53 (257)
T COG2099 2 MMRILLLGGTSDARALAKKLAAAP-VDIIL----------------SSLTGYGA-------KLAEQIGP----VRVGGFL 53 (257)
T ss_pred CceEEEEeccHHHHHHHHHhhccC-ccEEE----------------EEcccccc-------cchhccCC----eeecCcC
Confidence 457999998888999999999888 33333 12223332 11222233 3344566
Q ss_pred CccchHHHhc-CCCCeEEEccCCHHHHHH--HHHHHHHcCCcEEE
Q 013180 164 DASSEEEILS-GHPDFVLDCIDNIDTKVA--LLAACVRRGLKVLC 205 (448)
Q Consensus 164 ~~~~~~~ll~-~~~D~VIda~Dn~~~r~~--l~~~c~~~~ip~I~ 205 (448)
+.+....++. .+.|+|||++..++++.- ..+.|++.|+|++-
T Consensus 54 ~~e~l~~~l~e~~i~llIDATHPyAa~iS~Na~~aake~gipy~r 98 (257)
T COG2099 54 GAEGLAAFLREEGIDLLIDATHPYAARISQNAARAAKETGIPYLR 98 (257)
T ss_pred CHHHHHHHHHHcCCCEEEECCChHHHHHHHHHHHHHHHhCCcEEE
Confidence 7777766664 369999999999998874 45899999999987
No 486
>PRK08862 short chain dehydrogenase; Provisional
Probab=85.45 E-value=4.7 Score=38.45 Aligned_cols=33 Identities=21% Similarity=0.412 Sum_probs=27.2
Q ss_pred hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEe
Q 013180 82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVD 115 (448)
Q Consensus 82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD 115 (448)
++++.++|.|+ +|+|..+++.|+..|.. +.+++
T Consensus 3 ~~~k~~lVtGas~GIG~aia~~la~~G~~-V~~~~ 36 (227)
T PRK08862 3 IKSSIILITSAGSVLGRTISCHFARLGAT-LILCD 36 (227)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHCCCE-EEEEc
Confidence 56788999986 57999999999999974 66654
No 487
>KOG2250 consensus Glutamate/leucine/phenylalanine/valine dehydrogenases [Amino acid transport and metabolism]
Probab=85.44 E-value=5.7 Score=42.50 Aligned_cols=40 Identities=35% Similarity=0.532 Sum_probs=35.9
Q ss_pred HHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCcc
Q 013180 80 QKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQV 119 (448)
Q Consensus 80 ~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V 119 (448)
+-++.++|.|-|+|++|.+.++.|.+.|-.-|.|.|.+-+
T Consensus 247 ~~~kgkr~~i~G~Gnv~~~aa~~l~~~G~kvvavsD~~G~ 286 (514)
T KOG2250|consen 247 KGIKGKRVVIQGFGNVGGHAAKKLSEKGAKVVAVSDSKGV 286 (514)
T ss_pred CCcCceEEEEeCCCchHHHHHHHHHhcCCEEEEEEcCcee
Confidence 5678999999999999999999999999988888887754
No 488
>PRK07060 short chain dehydrogenase; Provisional
Probab=85.33 E-value=1.3 Score=41.80 Aligned_cols=35 Identities=31% Similarity=0.526 Sum_probs=30.2
Q ss_pred hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
+++++++|.|+ |++|..+++.|++.|. ++.+++.+
T Consensus 7 ~~~~~~lItGa~g~iG~~~a~~l~~~g~-~V~~~~r~ 42 (245)
T PRK07060 7 FSGKSVLVTGASSGIGRACAVALAQRGA-RVVAAARN 42 (245)
T ss_pred cCCCEEEEeCCcchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 66789999998 8999999999999997 58887743
No 489
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=85.32 E-value=1.1 Score=44.61 Aligned_cols=30 Identities=27% Similarity=0.440 Sum_probs=26.7
Q ss_pred cEEEEcCChHHHHHHHHHHHcCCceEEEEeC
Q 013180 86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDF 116 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~ 116 (448)
+|+|+|+|++|+.+|..|+++|. ++++++.
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~-~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGR-DVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCC-ceEEEec
Confidence 69999999999999999999984 5888765
No 490
>PRK08655 prephenate dehydrogenase; Provisional
Probab=85.28 E-value=2.6 Score=44.76 Aligned_cols=31 Identities=29% Similarity=0.559 Sum_probs=27.0
Q ss_pred cEEEEc-CChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 86 YVVVIG-LGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 86 ~VlVVG-~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
+|.||| +|++|+.++..|...|. +++++|.+
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G~-~V~v~~r~ 33 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKGF-EVIVTGRD 33 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence 699997 89999999999999995 68887754
No 491
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=85.27 E-value=1.2 Score=47.38 Aligned_cols=32 Identities=41% Similarity=0.491 Sum_probs=28.3
Q ss_pred CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
.+|+|||+|-+|+++|..|++.|+ +++|++..
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~-~V~LiE~r 32 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGV-PVILYEMR 32 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCC-cEEEEecc
Confidence 379999999999999999999996 58888853
No 492
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=85.25 E-value=2.3 Score=40.81 Aligned_cols=35 Identities=17% Similarity=0.419 Sum_probs=30.0
Q ss_pred hhCCcEEEEcCC---hHHHHHHHHHHHcCCceEEEEeCC
Q 013180 82 VSGSYVVVIGLG---GVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 82 L~~~~VlVVG~G---GvGs~va~~LarsGVg~i~LiD~D 117 (448)
|+++.|+|.|++ |+|..+++.|+..|. ++.+++..
T Consensus 3 l~~k~vlItGas~~~giG~~la~~l~~~G~-~vi~~~r~ 40 (256)
T PRK12748 3 LMKKIALVTGASRLNGIGAAVCRRLAAKGI-DIFFTYWS 40 (256)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHcCC-cEEEEcCC
Confidence 567889999995 799999999999996 78887654
No 493
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=85.23 E-value=5.3 Score=38.42 Aligned_cols=30 Identities=30% Similarity=0.484 Sum_probs=25.2
Q ss_pred cEEEEcC-ChHHHHHHHHHHHcCCceEEEEeC
Q 013180 86 YVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF 116 (448)
Q Consensus 86 ~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~ 116 (448)
+|+|.|+ ||+|..+++.|+..|. ++.++|.
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~-~V~~~~r 32 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGA-RVVISSR 32 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeC
Confidence 6888876 8999999999999997 5777654
No 494
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=85.21 E-value=3.3 Score=43.84 Aligned_cols=94 Identities=23% Similarity=0.268 Sum_probs=50.5
Q ss_pred cEEEEcCChHHHHHHH--HHH---HcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe
Q 013180 86 YVVVIGLGGVGSHAAA--MLL---RSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV 160 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~--~La---rsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~ 160 (448)
+|.|||+|++|+..+. .++ .....++.|+|.|.=. +... ...+.+.+....+..+|....
T Consensus 2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~---l~~~------------~~~~~~~~~~~~~~~~I~~tt 66 (423)
T cd05297 2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEER---LETV------------EILAKKIVEELGAPLKIEATT 66 (423)
T ss_pred eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHH---HHHH------------HHHHHHHHHhcCCCeEEEEeC
Confidence 6999999999998666 354 2222589998865311 1110 011123333344445554322
Q ss_pred ccCCccchHHHhcCCCCeEEEccCCHHHHHHHH--HHHHHcCC
Q 013180 161 LLYDASSEEEILSGHPDFVLDCIDNIDTKVALL--AACVRRGL 201 (448)
Q Consensus 161 ~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~--~~c~~~~i 201 (448)
+..+.+.+ .|+||.++-....+.... +...++++
T Consensus 67 ------D~~eal~~-AD~Vi~ai~~~~~~~~~~de~i~~K~g~ 102 (423)
T cd05297 67 ------DRREALDG-ADFVINTIQVGGHEYTETDFEIPEKYGY 102 (423)
T ss_pred ------CHHHHhcC-CCEEEEeeEecCccchhhhhhhHHHcCe
Confidence 23345555 999999986433222222 35555554
No 495
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=85.21 E-value=2.8 Score=40.52 Aligned_cols=36 Identities=22% Similarity=0.469 Sum_probs=30.3
Q ss_pred HHhhCCcEEEEcC---ChHHHHHHHHHHHcCCceEEEEeC
Q 013180 80 QKVSGSYVVVIGL---GGVGSHAAAMLLRSGVGRLLLVDF 116 (448)
Q Consensus 80 ~kL~~~~VlVVG~---GGvGs~va~~LarsGVg~i~LiD~ 116 (448)
.+++++.++|.|+ +|+|.++|+.|++.|. ++.+.|.
T Consensus 3 ~~~~~k~~lItGa~~s~GIG~a~a~~la~~G~-~v~l~~r 41 (256)
T PRK07889 3 GLLEGKRILVTGVITDSSIAFHVARVAQEQGA-EVVLTGF 41 (256)
T ss_pred ccccCCEEEEeCCCCcchHHHHHHHHHHHCCC-EEEEecC
Confidence 3477889999996 7999999999999997 4777664
No 496
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=85.21 E-value=1.2 Score=43.07 Aligned_cols=33 Identities=39% Similarity=0.575 Sum_probs=29.9
Q ss_pred cEEEEcCChHHHHHHHHHHHcCCceEEEEeCCcc
Q 013180 86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQV 119 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V 119 (448)
.|+|||+|-.|..+|..|++.|+ +++|+|.+..
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~-~v~vie~~~~ 34 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGL-RVLLLEKKSF 34 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCC
Confidence 58999999999999999999998 5999998754
No 497
>PRK07832 short chain dehydrogenase; Provisional
Probab=85.20 E-value=4.8 Score=39.06 Aligned_cols=30 Identities=33% Similarity=0.469 Sum_probs=24.6
Q ss_pred cEEEEc-CChHHHHHHHHHHHcCCceEEEEeC
Q 013180 86 YVVVIG-LGGVGSHAAAMLLRSGVGRLLLVDF 116 (448)
Q Consensus 86 ~VlVVG-~GGvGs~va~~LarsGVg~i~LiD~ 116 (448)
+++|.| .||+|.++++.|++.|.. +.+++.
T Consensus 2 ~vlItGas~giG~~la~~la~~G~~-vv~~~r 32 (272)
T PRK07832 2 RCFVTGAASGIGRATALRLAAQGAE-LFLTDR 32 (272)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeC
Confidence 578887 589999999999999964 777653
No 498
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=85.19 E-value=3.6 Score=38.33 Aligned_cols=69 Identities=12% Similarity=0.081 Sum_probs=53.1
Q ss_pred HHHHHHHHhhhCCCceEEEEeccCCccchHH----HhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcC
Q 013180 140 ALCLKKHFSSIFPECHIDAKVLLYDASSEEE----ILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATG 208 (448)
Q Consensus 140 v~~~~~~l~~inP~v~v~~~~~~~~~~~~~~----ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g 208 (448)
++.+++++++.+|.++|..+...++++..++ +-..++|+|+.+...++-...+.+.....+.+++.+.|
T Consensus 61 ~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~s~~dil~VglG~PkQE~~~~~~~~~~~~~v~~gvG 133 (177)
T TIGR00696 61 LQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIARSGAGIVFVGLGCPKQEIWMRNHRHLKPDAVMIGVG 133 (177)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHHcCCCEEEEEcCCcHhHHHHHHhHHhCCCcEEEEec
Confidence 5788999999999999988755665543333 33346999999999999999888887777777766533
No 499
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=85.18 E-value=4 Score=41.78 Aligned_cols=33 Identities=27% Similarity=0.416 Sum_probs=27.2
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeC
Q 013180 83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDF 116 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~ 116 (448)
.+.+|+|.|+|++|..++..+...|.. +.++|.
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~-vi~~~~ 215 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAFGLK-VTVISS 215 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeC
Confidence 467999999999999999998899975 555553
No 500
>PRK12831 putative oxidoreductase; Provisional
Probab=85.17 E-value=5.3 Score=42.69 Aligned_cols=34 Identities=29% Similarity=0.383 Sum_probs=30.5
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180 83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
..++|+|||.|..|..+|..|++.|. +++|+|..
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~-~V~v~e~~ 172 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGY-DVTIFEAL 172 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCC-eEEEEecC
Confidence 57899999999999999999999997 58998853
Done!