Query 013183
Match_columns 448
No_of_seqs 395 out of 2835
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 05:45:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013183.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013183hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lz8_A Putative chaperone DNAJ 100.0 1.1E-61 3.9E-66 483.6 18.9 279 79-426 25-315 (329)
2 1nlt_A Protein YDJ1, mitochond 100.0 7.6E-54 2.6E-58 412.2 20.5 216 199-417 8-236 (248)
3 3agx_A DNAJ homolog subfamily 100.0 5.1E-42 1.7E-46 314.8 20.7 171 202-424 2-178 (181)
4 2q2g_A HSP40 protein, heat sho 100.0 7.9E-41 2.7E-45 306.8 21.1 163 201-416 2-165 (180)
5 1c3g_A Heat shock protein 40; 100.0 6.5E-39 2.2E-43 291.4 17.2 158 203-416 1-159 (170)
6 3i38_A Putative chaperone DNAJ 99.9 5.3E-23 1.8E-27 172.8 10.2 88 335-425 2-94 (109)
7 2dn9_A DNAJ homolog subfamily 99.9 7.9E-22 2.7E-26 156.2 8.4 74 79-152 4-77 (79)
8 1bq0_A DNAJ, HSP40; chaperone, 99.8 3.1E-22 1.1E-26 166.7 5.0 73 81-153 2-74 (103)
9 1xao_A YDJ1, mitochondrial pro 99.8 6.7E-21 2.3E-25 163.1 10.3 87 339-426 1-97 (121)
10 1hdj_A Human HSP40, HDJ-1; mol 99.8 4E-21 1.4E-25 151.4 7.7 71 81-152 2-72 (77)
11 2ej7_A HCG3 gene; HCG3 protein 99.8 4.5E-21 1.5E-25 153.0 7.8 74 79-152 6-80 (82)
12 2ctr_A DNAJ homolog subfamily 99.8 5.6E-21 1.9E-25 154.5 7.7 72 79-151 4-75 (88)
13 2ctp_A DNAJ homolog subfamily 99.8 5.9E-21 2E-25 150.8 7.4 72 79-151 4-75 (78)
14 2yua_A Williams-beuren syndrom 99.8 5.8E-21 2E-25 157.8 6.8 71 78-148 13-83 (99)
15 2dmx_A DNAJ homolog subfamily 99.8 1.4E-20 4.8E-25 153.4 8.9 74 79-152 6-80 (92)
16 2ctq_A DNAJ homolog subfamily 99.8 9.7E-21 3.3E-25 160.0 7.1 74 79-152 17-90 (112)
17 2cug_A Mkiaa0962 protein; DNAJ 99.8 1.7E-20 5.7E-25 151.7 7.9 72 79-151 14-85 (88)
18 2ctw_A DNAJ homolog subfamily 99.8 1.7E-20 5.9E-25 157.6 7.1 73 79-151 14-86 (109)
19 2och_A Hypothetical protein DN 99.8 2.4E-20 8.3E-25 145.4 7.2 68 79-149 5-72 (73)
20 2lgw_A DNAJ homolog subfamily 99.8 3.6E-20 1.2E-24 152.9 7.0 72 82-153 2-74 (99)
21 2o37_A Protein SIS1; HSP40, J- 99.8 3.4E-20 1.2E-24 151.1 5.8 71 79-152 5-75 (92)
22 1wjz_A 1700030A21RIK protein; 99.8 4.3E-20 1.5E-24 151.1 6.2 71 79-149 13-89 (94)
23 2ctt_A DNAJ homolog subfamily 99.8 3.2E-20 1.1E-24 154.8 2.0 99 202-300 1-103 (104)
24 2qsa_A DNAJ homolog DNJ-2; J-d 99.8 4.3E-19 1.5E-23 149.2 5.6 70 80-149 13-86 (109)
25 3apq_A DNAJ homolog subfamily 99.7 1.4E-18 4.7E-23 162.1 7.2 72 82-153 2-73 (210)
26 3bvo_A CO-chaperone protein HS 99.7 4.1E-18 1.4E-22 158.7 7.8 100 42-147 9-115 (207)
27 2ys8_A RAB-related GTP-binding 99.7 3.9E-18 1.3E-22 138.3 6.6 62 81-143 26-87 (90)
28 2l6l_A DNAJ homolog subfamily 99.7 3.4E-18 1.2E-22 152.7 6.5 70 79-148 7-82 (155)
29 1iur_A KIAA0730 protein; DNAJ 99.7 3.6E-18 1.2E-22 137.5 3.8 68 76-143 10-78 (88)
30 1faf_A Large T antigen; J doma 99.7 1.6E-17 5.3E-22 131.3 5.5 62 82-148 11-74 (79)
31 1gh6_A Large T antigen; tumor 99.7 3.9E-18 1.3E-22 143.9 1.6 65 81-149 7-73 (114)
32 3hho_A CO-chaperone protein HS 99.7 2.6E-17 8.9E-22 149.5 6.3 68 81-148 3-77 (174)
33 2pf4_E Small T antigen; PP2A, 99.7 7.5E-18 2.6E-22 151.8 1.7 65 81-149 10-76 (174)
34 1fpo_A HSC20, chaperone protei 99.7 5.4E-17 1.8E-21 147.0 5.4 66 83-148 2-74 (171)
35 1n4c_A Auxilin; four helix bun 99.6 8.1E-17 2.8E-21 146.0 4.9 63 82-144 117-182 (182)
36 2qwo_B Putative tyrosine-prote 99.6 1.1E-16 3.7E-21 129.5 4.0 56 82-137 33-91 (92)
37 2guz_A Mitochondrial import in 99.6 3E-16 1E-20 121.4 4.5 59 79-141 11-70 (71)
38 3uo3_A J-type CO-chaperone JAC 99.6 4.5E-16 1.5E-20 142.0 4.3 66 80-148 9-81 (181)
39 3ag7_A Putative uncharacterize 99.6 5.5E-16 1.9E-20 129.1 2.9 58 81-139 40-104 (106)
40 3apo_A DNAJ homolog subfamily 99.6 3.7E-16 1.3E-20 172.8 1.3 75 79-153 18-92 (780)
41 1exk_A DNAJ protein; extended 99.3 9.9E-13 3.4E-17 103.6 4.8 74 219-292 1-78 (79)
42 1nlt_A Protein YDJ1, mitochond 99.3 3.1E-12 1.1E-16 122.5 7.7 109 229-339 54-236 (248)
43 2y4t_A DNAJ homolog subfamily 98.9 6.4E-10 2.2E-14 112.2 5.0 65 82-146 382-449 (450)
44 3i38_A Putative chaperone DNAJ 98.8 3.5E-09 1.2E-13 88.4 4.6 76 200-342 9-84 (109)
45 2guz_B Mitochondrial import in 98.8 5.4E-09 1.9E-13 78.7 4.6 52 83-138 5-59 (65)
46 1xao_A YDJ1, mitochondrial pro 98.7 9.1E-09 3.1E-13 87.5 5.4 81 200-344 4-88 (121)
47 2q2g_A HSP40 protein, heat sho 98.6 5.5E-08 1.9E-12 88.4 7.9 69 344-414 3-84 (180)
48 3lz8_A Putative chaperone DNAJ 98.6 4.7E-08 1.6E-12 97.0 6.7 72 342-414 138-223 (329)
49 1c3g_A Heat shock protein 40; 98.6 9E-08 3.1E-12 86.2 7.8 70 345-416 1-80 (170)
50 3agx_A DNAJ homolog subfamily 98.6 9.2E-08 3.1E-12 87.0 7.6 70 344-415 2-85 (181)
51 3lcz_A YCZA, inhibitor of trap 97.5 3.3E-05 1.1E-09 55.4 1.5 31 263-293 8-38 (53)
52 1exk_A DNAJ protein; extended 97.4 6.6E-05 2.3E-09 58.3 2.8 47 228-278 27-78 (79)
53 2ctt_A DNAJ homolog subfamily 97.4 0.0001 3.5E-09 60.5 3.6 48 229-280 45-97 (104)
54 3pmq_A Decaheme cytochrome C M 97.4 1.1E-05 3.8E-10 86.4 -3.0 51 206-256 168-221 (669)
55 2bx9_A Anti-trap, AT, tryptoph 96.7 0.00056 1.9E-08 48.9 1.7 11 266-276 25-35 (53)
56 3lcz_A YCZA, inhibitor of trap 96.6 0.00091 3.1E-08 47.8 2.5 26 248-277 11-36 (53)
57 2bx9_A Anti-trap, AT, tryptoph 96.5 0.0012 3.9E-08 47.3 2.5 26 230-258 10-35 (53)
58 2pzi_A Probable serine/threoni 87.5 0.31 1.1E-05 52.3 3.6 48 79-134 626-675 (681)
59 1ltl_A DNA replication initiat 39.0 91 0.0031 29.2 8.2 59 265-331 157-220 (279)
60 4a3n_A Transcription factor SO 27.4 66 0.0023 22.9 4.0 42 100-146 14-55 (71)
61 2qkd_A Zinc finger protein ZPR 27.2 20 0.00067 35.9 1.3 14 264-277 249-262 (404)
62 2qkd_A Zinc finger protein ZPR 27.1 22 0.00076 35.6 1.7 20 295-314 93-112 (404)
63 2cqn_A Formin-binding protein 25.8 90 0.0031 23.4 4.5 53 95-148 7-62 (77)
64 3nyb_B Protein AIR2; polya RNA 23.7 58 0.002 24.8 3.1 50 228-277 4-59 (83)
65 1y0p_A Fumarate reductase flav 23.4 4.9 0.00017 42.0 -4.2 57 231-287 13-88 (571)
66 1hry_A Human SRY; DNA, DNA-bin 22.9 1.1E+02 0.0038 22.1 4.6 42 100-146 16-57 (76)
67 3zxf_A Galectin-7; sugar bindi 22.8 1.1E+02 0.0036 25.4 4.9 43 374-416 9-59 (138)
68 2kdx_A HYPA, hydrogenase/ureas 22.5 66 0.0022 26.0 3.5 36 219-255 62-99 (119)
69 2apo_B Ribosome biogenesis pro 22.4 46 0.0016 23.9 2.1 9 264-272 18-26 (60)
70 1qo8_A Flavocytochrome C3 fuma 22.4 9.7 0.00033 39.6 -2.2 58 231-288 14-86 (566)
71 1wz6_A HMG-box transcription f 22.1 1.2E+02 0.004 22.5 4.6 42 100-146 19-60 (82)
72 3f27_D Transcription factor SO 21.7 1.1E+02 0.0036 22.7 4.3 42 100-146 18-59 (83)
73 2aus_D NOP10, ribosome biogene 21.2 55 0.0019 23.5 2.3 10 264-273 17-26 (60)
No 1
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=100.00 E-value=1.1e-61 Score=483.57 Aligned_cols=279 Identities=29% Similarity=0.539 Sum_probs=151.1
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhcccCCCCCcccc
Q 013183 79 SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSENEKYS 158 (448)
Q Consensus 79 ~~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~g~~~~~~~ 158 (448)
+...|||++|||+++|+.+|||+|||+||++||||++++ ++|+++|++|++||++|+||.+|+.||+++..+.... ++
T Consensus 25 m~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~-~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~~~~-~~ 102 (329)
T 3lz8_A 25 MELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKE-NDAEAKFKDLAEAWEVLKDEQRRAEYDQLWQHRNDPG-FG 102 (329)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCC-hHHHHHHHHHHHHHHHhhhhhhhcccchhhccccCCC-cc
Confidence 445799999999999999999999999999999999984 5789999999999999999999999999843211100 00
Q ss_pred CCCCCCccccCCCCCceecccccccccccchhcccccc-------ccccCCCCcEEEeeeehhhhcccccceeeeceeee
Q 013183 159 AGDAEGFRYAGDAEGFRYAYQTHFSDSFHKIFSEIFED-------ETSHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVP 231 (448)
Q Consensus 159 ~~~~~~~~~~~~~~~f~~~~~~~f~~~f~~~Fs~~f~~-------~~~~~g~di~~~l~isl~e~~~G~~~~i~~~~~~~ 231 (448)
.+|.+. +++|. +.+|.++|+++|++ +...++.|++++|.|+|+|+|+|+++++.+++.+.
T Consensus 103 ----~~~~~~--~~~f~-------~~~f~diF~~~Fg~~g~~~~~~~~~~g~Dl~~~l~vsleea~~G~~k~i~i~~~v~ 169 (329)
T 3lz8_A 103 ----RQRQTH--EQSYS-------QQDFDDIFSSMFGQQAHQRRRQHAARGHDLEIEVAVFLEETLAEQTRTISYNLPVY 169 (329)
T ss_dssp -----------------------------------------------CCCCCCEEEEECCCTTGGGSCEEEEEEEEEEEC
T ss_pred ----cccccc--cCCcC-------CCchhhhhHhhhcCcCCCCCCCCcCCCCCEEEEEecchhhhhhccceEEEEEEEee
Confidence 001000 00110 01233455555542 12457899999999999999999999999987653
Q ss_pred CCCCCCCCccCCCccccCCCccceeEEEeCCccccCCCcCCceEEeeecceeecCCcEEeceEEEEEEecCCCCCCCEEE
Q 013183 232 CDSCHGRGFPADAKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDTIR 311 (448)
Q Consensus 232 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~C~~C~g~G~~~~~~~l~V~IppG~~~G~~i~ 311 (448)
| |. |.+ .+.+.++++|.||||+++|++|+
T Consensus 170 ~----g~-----------------G~v------------------------------~~~~~~~l~V~IP~Gv~~G~~Ir 198 (329)
T 3lz8_A 170 N----VF-----------------GMI------------------------------ESETPKTLNVKIPAGVVDGQRIR 198 (329)
T ss_dssp C----SC-----------------C-C------------------------------CEEEEEEEEEEECTTCCTTCEEE
T ss_pred c----CC-----------------eEE------------------------------EEecceEEEEeCCCCCCCCCEEE
Confidence 2 11 111 12335689999999999999999
Q ss_pred ECCCCCCCCCCCCcccEEEEEEEecCCCcccCCCceEEEeecCHHHHhcCCEEEEeCCCCeEEEEeCCCCCCCcEEEEcC
Q 013183 312 VPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGKVQVKIPKGVQPGQLLVLRG 391 (448)
Q Consensus 312 ~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~I~l~eAl~G~~~~i~tldG~~~v~ip~g~~~g~~~~l~g 391 (448)
|+|+|+++..++.+|||||+|+|+||+.|+|+|+||+++++|+++||++|++++|+||||++.|+||++++||++++|+|
T Consensus 199 l~G~G~~g~~gg~~GDL~v~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~v~VptLdG~v~l~ip~gt~~g~~~rl~G 278 (329)
T 3lz8_A 199 LKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKESILLTVPPGSQAGQRLRIKG 278 (329)
T ss_dssp ESSCSCCC---CCCCCEEEEECCCCCSSCEEETTEEEEEEEECHHHHHHCEEEEECCSSSCEEEEECTTCCTTCEEEETT
T ss_pred EcccccCCCCCCCCCcEEEEEEEecCCccEEcCCcEEEEEECCHHHHcCCCeEEEECCCCCEEEEECCCCCCCCEEEEcC
Confidence 99999998778889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCcEEEEEEEECCC-----hHHHHHHcCC
Q 013183 392 KGLAKNGLFLDHGDQYVRFRVNFPT-----WQRIVERVRA 426 (448)
Q Consensus 392 ~G~p~~~~~~~~GDL~V~~~V~~P~-----~~~l~~~~~~ 426 (448)
+|||..+ .+|||||+|+|+||+ ++++++++++
T Consensus 279 ~GmP~~~---~rGDL~v~~~V~~P~~l~~~q~~~l~~~~~ 315 (329)
T 3lz8_A 279 KGLVSKT---HTGDLFAVIKIVMPTKPDEKARELWQQLAA 315 (329)
T ss_dssp CSCBCSS---CBCCEEEEEEECCCSSCCHHHHHHHHHHHH
T ss_pred CCCCCCC---CCCCEEEEEEEECCCCCCHHHHHHHHHHHh
Confidence 9999763 479999999999998 5566665554
No 2
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=100.00 E-value=7.6e-54 Score=412.23 Aligned_cols=216 Identities=29% Similarity=0.549 Sum_probs=200.5
Q ss_pred ccCCCCcEEEeeeehhhhcccccceeeeceeeeCCCCCCCCccCCCccccCCCccceeEEEeC--------CccccCCCc
Q 013183 199 SHFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGIGRVTIP--------PFTSTCSTC 270 (448)
Q Consensus 199 ~~~g~di~~~l~isl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~--------~~~~~C~~C 270 (448)
..+++|++++|.|||+|+|+|+++++.+.+.+.|+.|+|+|...+. ..+|+.|+|+|++... .++++|+.|
T Consensus 8 ~~~g~d~~~~l~vslee~~~G~~k~i~~~r~~~C~~C~G~G~~~g~-~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C 86 (248)
T 1nlt_A 8 PQRGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGA-VKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVC 86 (248)
T ss_dssp CCBCCCEEEEEEECTTHHHHCEEEEEEEEEEEECTTTTTCSBSTTT-CCCCTTSSSSSCEEEEEESSSEEEEEECSCTTC
T ss_pred CCCCCCEEEEEEecHHHhcCCceEEEEeeEEEeCCCCcCccCCCCC-CccCCCCCCCcEEEEEEecCceEEEEEEcCCCC
Confidence 3568999999999999999999999999999999999999998877 4899999999976421 257899999
Q ss_pred CCceEEe--eecceeecCCcEEeceEEEEEEecCCCCCCCEEEECCCCCCCCCCCCcccEEEEEEEecCCCcccCCCceE
Q 013183 271 KGLGRII--KDHCMTCKGSGVVDGVKEVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVY 348 (448)
Q Consensus 271 ~G~G~~~--~~~C~~C~g~G~~~~~~~l~V~IppG~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~ 348 (448)
+|+|+++ +++|..|+|.|++.+.++++|.|||||++|++|+|+|+|++++ ++.+|||||+|+++||+.|+|+|+||+
T Consensus 87 ~G~G~~i~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~~~-~g~~GDl~v~i~v~~h~~F~R~G~DL~ 165 (248)
T 1nlt_A 87 HGTGDIIDPKDRCKSCNGKKVENERKILEVHVEPGMKDGQRIVFKGEADQAP-DVIPGDVVFIVSERPHKSFKRDGDDLV 165 (248)
T ss_dssp SSSSSCCCTTSBCSSSTTSCEEEEEEEEEEEECTTCCTTCEEEETTCSCCCT-TCBCCCEEEEEEECCCSSCEEETTEEE
T ss_pred CCcCEEeccCCCCcccCCCceEeeeEEEEEEECCCccCCCEEEEeeeecCCC-CCCcceEEEEEEEecCccceeeCCEEE
Confidence 9999999 8999999999999999999999999999999999999999974 568999999999999999999999999
Q ss_pred EEeecCHHHHhcCCEEEEeCCCCe-EEEEeCCC--CCCCcEEEEcCCCCCCCCCCCCCCcEEEEEEEECCCh
Q 013183 349 VDSNISFTQAILGGKVDVPTLSGK-VQVKIPKG--VQPGQLLVLRGKGLAKNGLFLDHGDQYVRFRVNFPTW 417 (448)
Q Consensus 349 ~~~~I~l~eAl~G~~~~i~tldG~-~~v~ip~g--~~~g~~~~l~g~G~p~~~~~~~~GDL~V~~~V~~P~~ 417 (448)
++++|+|.||++|++++|+||||+ +.|+||++ ++||++++|+|+|||..+.. .+|||||+|+|+||+-
T Consensus 166 ~~~~Isl~eAllG~~i~v~tldG~~~~i~ip~g~vt~~g~~~rl~g~Gmp~~~~~-~~GDL~V~~~V~~P~~ 236 (248)
T 1nlt_A 166 YEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYG-GYGNLIIKFTIKDPEN 236 (248)
T ss_dssp EEEEEEHHHHHHCBCCEEECSSSCEEECCBCTTTTCSTTCEEEETTCSCBCSSSC-SBCCEEEEEEEECCC-
T ss_pred EEEEeCHHHHhcCCEEEEeCCCCCEEEEEeCCCCeeCCCeEEEEcCCCCccCCCC-CcCCEEEEEEEECCCC
Confidence 999999999999999999999996 89999998 99999999999999986443 5799999999999984
No 3
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A
Probab=100.00 E-value=5.1e-42 Score=314.83 Aligned_cols=171 Identities=28% Similarity=0.492 Sum_probs=148.4
Q ss_pred CCCcEEEeeeehhhhcccccceeeeceeeeCCCCCCCCccCCCccccCCCccceeEEEeCCccccCCCcCCceEEeeecc
Q 013183 202 APDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHC 281 (448)
Q Consensus 202 g~di~~~l~isl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~C 281 (448)
++|++++|.|||+|+|+|+++++.+.+ +|
T Consensus 2 ~~d~~~~l~islee~~~G~~k~i~i~~---------------------------------------------------~c 30 (181)
T 3agx_A 2 DPPVTHDLRVSLEEIYSGCTKKMKISH---------------------------------------------------KR 30 (181)
T ss_dssp ----CEEEEECHHHHHHCEEEEEEEEE---------------------------------------------------EE
T ss_pred CCCEEEEEEEEHHHhcCCcEEEEEEec---------------------------------------------------cc
Confidence 468999999999999999999987643 23
Q ss_pred eeecCCcEEeceEEEEEEecCCCCCCCEEEECCCCCCCCCCCCcccEEEEEEEecCCCcccCCCceEEEeecCHHHHhcC
Q 013183 282 MTCKGSGVVDGVKEVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILG 361 (448)
Q Consensus 282 ~~C~g~G~~~~~~~l~V~IppG~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~I~l~eAl~G 361 (448)
..|+|.|++.+.++++|.||||+++|++|+|+|+|++++ ++.+|||||+|+++||+.|+|+|+||+++++|+++||++|
T Consensus 31 ~~c~G~g~~~~~~~l~V~Ip~G~~~G~~ir~~G~G~~~~-~g~~GDl~v~i~~~~h~~F~R~G~DL~~~~~Isl~eAllG 109 (181)
T 3agx_A 31 LNPDGKSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTS-NNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCG 109 (181)
T ss_dssp ECTTSSCEEEEEEEEEEEECTTCCTTCEEEETTCSCCCS-SSCCCCEEEEEEECCCSSCEEETTEEEEEEEEEHHHHHHC
T ss_pred CCCCCceEEEEeEEEEEEECCCccCCcEEEEeeccccCC-CCCcccEEEEEEEeccccceeeCCcEEEEEEcCHHHHhCC
Confidence 444555566778999999999999999999999999976 6789999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCe-EEEEeCCCCCCCcEEEEcCCCCCCCCCCCCCCcEEEEEEEECCC-----hHHHHHHc
Q 013183 362 GKVDVPTLSGK-VQVKIPKGVQPGQLLVLRGKGLAKNGLFLDHGDQYVRFRVNFPT-----WQRIVERV 424 (448)
Q Consensus 362 ~~~~i~tldG~-~~v~ip~g~~~g~~~~l~g~G~p~~~~~~~~GDL~V~~~V~~P~-----~~~l~~~~ 424 (448)
++++|+|+||+ +.|+||+++++|++++|+|+|||..+..+.+|||||+|+|+||+ ++++++++
T Consensus 110 ~~i~v~tldG~~~~i~i~~~t~~g~~~rl~g~Gmp~~~~~~~~GDL~V~~~V~~P~~ls~~q~~~l~~~ 178 (181)
T 3agx_A 110 CTVNVPTLDGRTIPVVFKDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQV 178 (181)
T ss_dssp EEEEEECTTSCEEEEEECSCCCTTCEEEETTCSCBCSSSTTSBCCEEEEEEEECCSCCCHHHHHHHHHH
T ss_pred CEEEeECCCCCEEEEECCCccCCCcEEEECCcCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHHh
Confidence 99999999995 89999999999999999999999864434579999999999997 45555544
No 4
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=7.9e-41 Score=306.79 Aligned_cols=163 Identities=21% Similarity=0.351 Sum_probs=149.2
Q ss_pred CCCCcEEEeeeehhhhcccccceeeeceeeeCCCCCCCCccCCCccccCCCccceeEEEeCCccccCCCcCCceEEeeec
Q 013183 201 FAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDH 280 (448)
Q Consensus 201 ~g~di~~~l~isl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~ 280 (448)
+++|++++|.|||+|+|+|+++++.+.+.+.|+.
T Consensus 2 ~g~d~~~~l~islee~~~G~~k~i~~~~~~~c~~---------------------------------------------- 35 (180)
T 2q2g_A 2 APRSHEVPLLVTLEELYLGKRKKIKVTRKRFIEH---------------------------------------------- 35 (180)
T ss_dssp --CEEEEEEEECHHHHHHCEEEEEEEEEEEEETT----------------------------------------------
T ss_pred CCCCEEEEEEeeHHHhcCCcEEEEEEeEEEecCC----------------------------------------------
Confidence 4789999999999999999999999999887731
Q ss_pred ceeecCCcEEeceEEEEEEecCCCCCCCEEEECCCCCCCCCCCCcccEEEEEEEecCCCcccCCCceEEEeecCHHHHhc
Q 013183 281 CMTCKGSGVVDGVKEVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAIL 360 (448)
Q Consensus 281 C~~C~g~G~~~~~~~l~V~IppG~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~I~l~eAl~ 360 (448)
|++.+.++++|.|||||++|++|+|+|+|+++.+|+.+|||||+|+++||+.|+|+|+||+++++|+++||++
T Consensus 36 -------g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~g~~gg~~GDl~v~i~~~~h~~F~R~G~DL~~~~~Isl~eAll 108 (180)
T 2q2g_A 36 -------KVRNEENIVEVEIKPGWKDGTKLTYSGEGDQESPGTSPGDLVLIIQTKTHPRFTRDDCHLIMKVTIPLVRALT 108 (180)
T ss_dssp -------EEEEEEEEEEEEECTTCCTTCEEEETTCSCCSSTTSCCCEEEEEEEECCCSSCEEETTEEEEEEEEEHHHHHH
T ss_pred -------ceEEeeEEEEEEECCCCcCCcEEEEeeccCCCCCCCccccEEEEEEEEecccEEEcCCEEEEEEEcCHHHHhC
Confidence 3355678999999999999999999999999667889999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCe-EEEEeCCCCCCCcEEEEcCCCCCCCCCCCCCCcEEEEEEEECCC
Q 013183 361 GGKVDVPTLSGK-VQVKIPKGVQPGQLLVLRGKGLAKNGLFLDHGDQYVRFRVNFPT 416 (448)
Q Consensus 361 G~~~~i~tldG~-~~v~ip~g~~~g~~~~l~g~G~p~~~~~~~~GDL~V~~~V~~P~ 416 (448)
|++++|+|+||+ +.|++|+++++|++++|+|+|||..+.++.+|||||+|+|+||+
T Consensus 109 G~~i~v~tldG~~v~i~ip~~t~~g~~~rl~g~Gmp~~~~~~~~GDL~V~~~V~~P~ 165 (180)
T 2q2g_A 109 GFTCPVTTLDNRNLQIPIKEIVNPKTRKIVPNEGMPIKNQPGQKGDLILEFDICFPK 165 (180)
T ss_dssp CEEEEEECTTCCEEEEEECSCCCTTCEEEETTCSCBCSSSTTCBCCEEEEEEEECCS
T ss_pred CCEEEeeCCCCCEEEEECCCccCCCEEEEECCcCCCcCCCCCCcCCEEEEEEEECCC
Confidence 999999999995 89999999999999999999999864434689999999999997
No 5
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A
Probab=100.00 E-value=6.5e-39 Score=291.39 Aligned_cols=158 Identities=22% Similarity=0.380 Sum_probs=143.9
Q ss_pred CCcEEEeeeehhhhcccccceeeeceeeeCCCCCCCCccCCCccccCCCccceeEEEeCCccccCCCcCCceEEeeecce
Q 013183 203 PDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCM 282 (448)
Q Consensus 203 ~di~~~l~isl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~C~ 282 (448)
+|++++|.|||+|+|+|+++++.+.+.. +
T Consensus 1 ~d~~~~l~islee~~~G~~k~i~~~~~~----~----------------------------------------------- 29 (170)
T 1c3g_A 1 ETVQVNLPVSLEDLFVGKKKSFKIGRKG----P----------------------------------------------- 29 (170)
T ss_dssp CEEEEEEEECHHHHHHTCEEEEEEEEEE----T-----------------------------------------------
T ss_pred CCEEEEEEeEHHHhhCCcEEEEEEEEec----C-----------------------------------------------
Confidence 4789999999999999999999987651 0
Q ss_pred eecCCcEEeceEEEEEEecCCCCCCCEEEECCCCCCCCCCCCcccEEEEEEEecCCCcccCCCceEEEeecCHHHHhcCC
Q 013183 283 TCKGSGVVDGVKEVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSRDGADVYVDSNISFTQAILGG 362 (448)
Q Consensus 283 ~C~g~G~~~~~~~l~V~IppG~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~I~l~eAl~G~ 362 (448)
.|.+ +.++++|.||||+++|++|+|+|+|+++.+|+.+|||||+|+++||+.|+|+|+||+++++|+++||++|+
T Consensus 30 ----~G~~-~~~~l~V~Ip~G~~~G~~ir~~g~G~~~~~gg~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~ 104 (170)
T 1c3g_A 30 ----HGAS-EKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNFKRDGDDLIYTLPLSFKESLLGF 104 (170)
T ss_dssp ----TTEE-EEEEEEEECCTTCCTTCEEEESSCSSBCSSSSCBCEEEEEEEECCCSSEEEETTEEEEEECCBHHHHHHCE
T ss_pred ----CCcE-EeEEEEEEeCCCccCCCEEEEeccccCCCCCCccccEEEEEEEccCCccEEeCCcEeEEEEcCHHHHhCCC
Confidence 1223 56799999999999999999999999877888999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCe-EEEEeCCCCCCCcEEEEcCCCCCCCCCCCCCCcEEEEEEEECCC
Q 013183 363 KVDVPTLSGK-VQVKIPKGVQPGQLLVLRGKGLAKNGLFLDHGDQYVRFRVNFPT 416 (448)
Q Consensus 363 ~~~i~tldG~-~~v~ip~g~~~g~~~~l~g~G~p~~~~~~~~GDL~V~~~V~~P~ 416 (448)
+++|+|+||+ +.|++|+++++|++++|+|+|||..+..+.+|||||+|+|+||+
T Consensus 105 ~~~v~tldG~~~~i~i~~~t~~g~~~rl~g~G~p~~~~~~~~GDL~V~~~V~~P~ 159 (170)
T 1c3g_A 105 SKTIQTIDGRTLPLSRVQPVQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYPI 159 (170)
T ss_dssp EEEEECSSSCEEEEEESSCCCTTCEEECTTCSCBCSSCTTSBCCEEEEECCBCCS
T ss_pred eEEeeCCCCCEEEEECCCccCCCcEEEEeCCCCCcCCCCCCCCCEEEEEEEECCC
Confidence 9999999996 89999999999999999999999864444579999999999998
No 6
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}
Probab=99.88 E-value=5.3e-23 Score=172.78 Aligned_cols=88 Identities=30% Similarity=0.533 Sum_probs=78.8
Q ss_pred ecCCCcccCCCceEEEeecCHHHHhcCCEEEEeCCCCeEEEEeCCCCCCCcEEEEcCCCCCCCCCCCCCCcEEEEEEEEC
Q 013183 335 ADDPIFSRDGADVYVDSNISFTQAILGGKVDVPTLSGKVQVKIPKGVQPGQLLVLRGKGLAKNGLFLDHGDQYVRFRVNF 414 (448)
Q Consensus 335 ~~h~~f~R~G~DL~~~~~I~l~eAl~G~~~~i~tldG~~~v~ip~g~~~g~~~~l~g~G~p~~~~~~~~GDL~V~~~V~~ 414 (448)
+||+.|+|+|+||+++++|++.||++|++++|+|+||.+.|+||+++++|++++|+|+|||..+ .+|||||+|+|+|
T Consensus 2 kph~~F~R~G~DL~~~~~Isl~eAl~G~~i~v~tldG~~~v~ip~g~~~G~~~rl~G~G~p~~~---~~GDL~v~~~V~~ 78 (109)
T 3i38_A 2 NAHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKESILLTVPPGSQAGQRLRIKGKGLVSKT---HTGDLFAVIKIVM 78 (109)
T ss_dssp --CCCCEEETTEEEEEEEECHHHHHHCEEEEECCSSSCEEEEECTTCCTTCEEEETTCSCBCSS---CBCCEEEEEEECC
T ss_pred CCCCCeEEECCEEEEEEEcCHHHHhCCCEEEEEcCCCCEEEeeCCCcCcCeEEEECCccCCCCC---CCcCEEEEEEEEC
Confidence 6899999999999999999999999999999999999999999999999999999999999843 5899999999999
Q ss_pred CC-----hHHHHHHcC
Q 013183 415 PT-----WQRIVERVR 425 (448)
Q Consensus 415 P~-----~~~l~~~~~ 425 (448)
|+ ++++++++.
T Consensus 79 P~~Ls~~q~~~l~~l~ 94 (109)
T 3i38_A 79 PTKPDEKARELWQQLA 94 (109)
T ss_dssp CSSCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 98 455555443
No 7
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=7.9e-22 Score=156.23 Aligned_cols=74 Identities=57% Similarity=0.851 Sum_probs=68.7
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhcccCCC
Q 013183 79 SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGS 152 (448)
Q Consensus 79 ~~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~g~ 152 (448)
....|||+||||+++|+.+|||+|||+|+++||||++++++++.++|++|++||++|+||.+|..||.++..+.
T Consensus 4 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~ 77 (79)
T 2dn9_A 4 GSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSGPS 77 (79)
T ss_dssp SCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSCCCCS
T ss_pred CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhccCcCC
Confidence 45679999999999999999999999999999999998878899999999999999999999999999976543
No 8
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.85 E-value=3.1e-22 Score=166.69 Aligned_cols=73 Identities=49% Similarity=0.802 Sum_probs=68.3
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhcccCCCC
Q 013183 81 KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSE 153 (448)
Q Consensus 81 ~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~g~~ 153 (448)
..|||+||||+++|+.+|||+|||+|+++||||+++++++++++|++|++||++|+||.+|..||.++..+..
T Consensus 2 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~ 74 (103)
T 1bq0_A 2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFE 74 (103)
T ss_dssp CCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTTSSC
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhhhhc
Confidence 4699999999999999999999999999999999987788899999999999999999999999999876654
No 9
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}
Probab=99.84 E-value=6.7e-21 Score=163.05 Aligned_cols=87 Identities=30% Similarity=0.563 Sum_probs=73.8
Q ss_pred CcccCCCceEEEeecCHHHHhcCCEEEEeCCCCe-EEEEeCCC--CCCCcEEEEcCCCCCCCCCCCCCCcEEEEEEEECC
Q 013183 339 IFSRDGADVYVDSNISFTQAILGGKVDVPTLSGK-VQVKIPKG--VQPGQLLVLRGKGLAKNGLFLDHGDQYVRFRVNFP 415 (448)
Q Consensus 339 ~f~R~G~DL~~~~~I~l~eAl~G~~~~i~tldG~-~~v~ip~g--~~~g~~~~l~g~G~p~~~~~~~~GDL~V~~~V~~P 415 (448)
.|+|+|+||+++++|++.+|++|++++|+|+||+ +.|+||+| +++|++++|+|+|||..+.. .+|||||+|+|+||
T Consensus 1 ~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~~v~ip~g~v~~~G~~~rl~G~Gmp~~~~~-~~GDL~V~~~V~~P 79 (121)
T 1xao_A 1 SFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYG-GYGNLIIKFTIKFP 79 (121)
T ss_dssp CCEEETTEEEEEEEEEHHHHHHCEEEEEECTTSCEEEEEECTTSCCCTTCEEEETTCSCC-------CCCEEEEEEEECC
T ss_pred CceEECCeEEEEEEcCHHHHhCCCEEEEecCCCCEEEEEeCCCCeeCCCcEEEECCCCCCCCCCC-CCCCEEEEEEEECC
Confidence 4899999999999999999999999999999997 89999999 99999999999999986443 57999999999999
Q ss_pred C-------hHHHHHHcCC
Q 013183 416 T-------WQRIVERVRA 426 (448)
Q Consensus 416 ~-------~~~l~~~~~~ 426 (448)
+ ++++++++..
T Consensus 80 ~~~~ls~~q~~~l~~l~~ 97 (121)
T 1xao_A 80 ENHFTSEENLKKLEEILP 97 (121)
T ss_dssp CTTCSCHHHHHHHHHHSC
T ss_pred CCCCCCHHHHHHHHHHcc
Confidence 7 3455555543
No 10
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.83 E-value=4e-21 Score=151.43 Aligned_cols=71 Identities=45% Similarity=0.776 Sum_probs=66.0
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhcccCCC
Q 013183 81 KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGS 152 (448)
Q Consensus 81 ~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~g~ 152 (448)
..|||+||||+++|+.+|||+||++|++++|||++++ +.+.+.|++|++||++|+||.+|..||+++.+|.
T Consensus 2 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 72 (77)
T 1hdj_A 2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKE-PGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGL 72 (77)
T ss_dssp CCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCC-TTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGC
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHHCCHHHHHHHHHHccccc
Confidence 4699999999999999999999999999999999974 6788999999999999999999999999976654
No 11
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=4.5e-21 Score=152.99 Aligned_cols=74 Identities=47% Similarity=0.734 Sum_probs=67.2
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh-hHHHHHHHHHHHHHHhhhhhhhhhhhhcccCCC
Q 013183 79 SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNP-SAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGS 152 (448)
Q Consensus 79 ~~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~-~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~g~ 152 (448)
+...|||+||||+++++.+|||+|||+|+++||||+++.+. .++++|++|++||++|+||.+|..||.++..+.
T Consensus 6 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~ 80 (82)
T 2ej7_A 6 SGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGSGPS 80 (82)
T ss_dssp SSSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCCCSC
T ss_pred CCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCcccc
Confidence 44579999999999999999999999999999999998653 678899999999999999999999999976543
No 12
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=5.6e-21 Score=154.48 Aligned_cols=72 Identities=51% Similarity=0.858 Sum_probs=66.8
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhcccCC
Q 013183 79 SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRG 151 (448)
Q Consensus 79 ~~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~g 151 (448)
....|||+||||+++|+.+|||+|||+|+++||||+++ ++.+.++|++|++||++|+||.+|..||.++..+
T Consensus 4 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~-~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 75 (88)
T 2ctr_A 4 GSSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNK-SPDAEAKFREIAEAYETLSDANRRKEYDTLGHSA 75 (88)
T ss_dssp CCCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCC-SHHHHHHHHHHHHHHHHHHSSHHHHHHHHTCHHH
T ss_pred CCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCC-ChHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccc
Confidence 44579999999999999999999999999999999998 5788999999999999999999999999987644
No 13
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=5.9e-21 Score=150.82 Aligned_cols=72 Identities=44% Similarity=0.713 Sum_probs=66.7
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhcccCC
Q 013183 79 SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRG 151 (448)
Q Consensus 79 ~~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~g 151 (448)
....|||+||||+++|+.+|||+||++|+++||||+++ .+.+.++|++|++||++|+||.+|..||.++..+
T Consensus 4 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~-~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~ 75 (78)
T 2ctp_A 4 GSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNH-APGATEAFKAIGTAYAVLSNPEKRKQYDQFGSGP 75 (78)
T ss_dssp SCSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCS-SHHHHHHHHHHHHHHHHHTSHHHHHHHHHTCSCS
T ss_pred CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CccHHHHHHHHHHHHHHHCCHHHHHHHHHcCccc
Confidence 44679999999999999999999999999999999997 4788999999999999999999999999997654
No 14
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=5.8e-21 Score=157.84 Aligned_cols=71 Identities=38% Similarity=0.593 Sum_probs=67.0
Q ss_pred CCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhcc
Q 013183 78 YSSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRR 148 (448)
Q Consensus 78 ~~~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~ 148 (448)
.++..|||+||||+++|+.+|||+|||+|+++||||++++++++.++|++|++||+||+||.+|..||+..
T Consensus 13 ~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l 83 (99)
T 2yua_A 13 SYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGL 83 (99)
T ss_dssp SSCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHTC
T ss_pred CCCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhc
Confidence 45678999999999999999999999999999999999888889999999999999999999999999963
No 15
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1.4e-20 Score=153.44 Aligned_cols=74 Identities=45% Similarity=0.710 Sum_probs=67.3
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hhHHHHHHHHHHHHHHhhhhhhhhhhhhcccCCC
Q 013183 79 SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNN-PSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGS 152 (448)
Q Consensus 79 ~~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~g~ 152 (448)
....|||+||||+++|+.+|||+|||+|+++||||+++.+ +.++++|++|++||++|+||.+|..||.++..+.
T Consensus 6 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 80 (92)
T 2dmx_A 6 SGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCDSW 80 (92)
T ss_dssp CCCCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCSCSS
T ss_pred CCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccc
Confidence 4457999999999999999999999999999999999865 3688999999999999999999999999976554
No 16
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=9.7e-21 Score=159.99 Aligned_cols=74 Identities=36% Similarity=0.560 Sum_probs=69.1
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhcccCCC
Q 013183 79 SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGS 152 (448)
Q Consensus 79 ~~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~g~ 152 (448)
....|||+||||+++|+.+|||+|||+|+++||||++++++++.++|++|++||++|+||.+|..||+++..+.
T Consensus 17 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~ 90 (112)
T 2ctq_A 17 EDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRRSQM 90 (112)
T ss_dssp CCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHTC
T ss_pred cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhhcc
Confidence 45679999999999999999999999999999999999778899999999999999999999999999976553
No 17
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.82 E-value=1.7e-20 Score=151.69 Aligned_cols=72 Identities=47% Similarity=0.786 Sum_probs=66.3
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhcccCC
Q 013183 79 SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRG 151 (448)
Q Consensus 79 ~~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~g 151 (448)
....|||+||||+++|+.+|||+|||+|+++||||++++ +.++++|++|++||++|+||.+|..||.++..+
T Consensus 14 ~~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~ 85 (88)
T 2cug_A 14 ALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKD-PGAEDRFIQISKAYEILSNEEKRTNYDHYGSGP 85 (88)
T ss_dssp SSSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCS-TTHHHHHHHHHHHHHHHHSHHHHHHHHHHTTCC
T ss_pred cCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHHCCHHHHHHHHHcCCCC
Confidence 345799999999999999999999999999999999984 678899999999999999999999999997543
No 18
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.81 E-value=1.7e-20 Score=157.65 Aligned_cols=73 Identities=45% Similarity=0.735 Sum_probs=68.4
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhcccCC
Q 013183 79 SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRG 151 (448)
Q Consensus 79 ~~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~g 151 (448)
....+||+||||+++|+.+|||+|||+|+++||||++++++++.++|++|++||++|+||.+|+.||.++..+
T Consensus 14 ~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~ 86 (109)
T 2ctw_A 14 TSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSLG 86 (109)
T ss_dssp SCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCHHH
T ss_pred CCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHhcccc
Confidence 4567999999999999999999999999999999999988889999999999999999999999999987654
No 19
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.81 E-value=2.4e-20 Score=145.40 Aligned_cols=68 Identities=38% Similarity=0.702 Sum_probs=61.9
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhccc
Q 013183 79 SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRS 149 (448)
Q Consensus 79 ~~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~ 149 (448)
....+||+||||+++|+.+|||+||++|++++|||+++++ .++|++|++||++|+||.+|..||++|.
T Consensus 5 ~~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~g~ 72 (73)
T 2och_A 5 VKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDG---AEQFKQISQAYEVLSDEKKRQIYDQGGE 72 (73)
T ss_dssp -CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTC---HHHHHHHHHHHHHHTSHHHHHHHHHTC-
T ss_pred cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCH---HHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 3457999999999999999999999999999999999753 6899999999999999999999999864
No 20
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.80 E-value=3.6e-20 Score=152.88 Aligned_cols=72 Identities=47% Similarity=0.738 Sum_probs=64.7
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hhHHHHHHHHHHHHHHhhhhhhhhhhhhcccCCCC
Q 013183 82 RDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNN-PSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSE 153 (448)
Q Consensus 82 ~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~g~~ 153 (448)
.|||+||||+++|+.+|||+|||+|+++||||+++.+ +.++++|++|++||++|+||.+|..||.++..+..
T Consensus 2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~~~~ 74 (99)
T 2lgw_A 2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREGLT 74 (99)
T ss_dssp CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC---
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccccc
Confidence 4899999999999999999999999999999999865 35789999999999999999999999999876544
No 21
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.80 E-value=3.4e-20 Score=151.14 Aligned_cols=71 Identities=37% Similarity=0.659 Sum_probs=64.6
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhcccCCC
Q 013183 79 SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGS 152 (448)
Q Consensus 79 ~~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~g~ 152 (448)
....|||+||||+++|+.+|||+|||+|+++||||+++++ .++|++|++||++|+||.+|..||.++..+.
T Consensus 5 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~ 75 (92)
T 2o37_A 5 VKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD---TEKFKEISEAFEILNDPQKREIYDQYGLEAA 75 (92)
T ss_dssp CSCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCC---HHHHHHHHHHHHHHTSHHHHHHHHHHCHHHH
T ss_pred ccCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh---HHHHHHHHHHHHHHCCHHHHHHHHHHCHHHh
Confidence 4567999999999999999999999999999999999764 5699999999999999999999999976543
No 22
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.80 E-value=4.3e-20 Score=151.10 Aligned_cols=71 Identities=32% Similarity=0.597 Sum_probs=64.9
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC------hhHHHHHHHHHHHHHHhhhhhhhhhhhhccc
Q 013183 79 SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNN------PSAKRKFQEIRDAYETLRDSEKRAQYDRRRS 149 (448)
Q Consensus 79 ~~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~------~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~ 149 (448)
+...|||+||||+++|+.+|||+|||+|+++||||+++.+ +.+.++|++|++||++|+||.+|+.||....
T Consensus 13 ~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 89 (94)
T 1wjz_A 13 TLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRS 89 (94)
T ss_dssp SSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSC
T ss_pred CCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcc
Confidence 4567999999999999999999999999999999998743 4578999999999999999999999999854
No 23
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=3.2e-20 Score=154.79 Aligned_cols=99 Identities=31% Similarity=0.626 Sum_probs=89.5
Q ss_pred CCCcEEEeeeehhhhcccccceeeeceeeeCCCCCCCCccCCCccccCCCccceeEEEeC----CccccCCCcCCceEEe
Q 013183 202 APDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGIGRVTIP----PFTSTCSTCKGLGRII 277 (448)
Q Consensus 202 g~di~~~l~isl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~----~~~~~C~~C~G~G~~~ 277 (448)
|.|++++|+|||+|||+|.++++.+++.+.|+.|+|+|...+....+|+.|+|+|++... .++++|+.|+|.|+++
T Consensus 1 ~~~~~~~l~vslee~~~G~~~~i~~~~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i 80 (104)
T 2ctt_A 1 GSSGSSGMELTFNQAAKGVNKEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSGMETINTGPFVMRSTCRRCGGRGSII 80 (104)
T ss_dssp CCCCCCCCCCCCSSCCSSSCTTCCSSCCEECSSSSSSSSCTTCCCEECSSSSSSCEEEEEETTEEEEEECSSSSSSSEEC
T ss_pred CCceEEEEEEEHHHHcCCCEEEEEeeeeeECCCCcCCccCCCCCCccCCCCCCCEEEEEEeCCEEEEEECCcCCCcceEC
Confidence 468889999999999999999999999999999999999888888999999999987532 2367999999999999
Q ss_pred eecceeecCCcEEeceEEEEEEe
Q 013183 278 KDHCMTCKGSGVVDGVKEVKVTI 300 (448)
Q Consensus 278 ~~~C~~C~g~G~~~~~~~l~V~I 300 (448)
+++|..|+|.|++.+.++|+|++
T Consensus 81 ~~~C~~C~G~G~v~~~k~l~V~~ 103 (104)
T 2ctt_A 81 ISPCVVCRGAGQAKQKKRSGPSS 103 (104)
T ss_dssp SSCCSSSSSCSEECCCCSSCCSC
T ss_pred CCcCCCCCCeeEEEEEEEEEEEc
Confidence 99999999999999988887764
No 24
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.76 E-value=4.3e-19 Score=149.16 Aligned_cols=70 Identities=34% Similarity=0.576 Sum_probs=64.6
Q ss_pred CCCCcccccCCCCCC-CHHHHHHHHHHHHHHhCCCCCCC---ChhHHHHHHHHHHHHHHhhhhhhhhhhhhccc
Q 013183 80 SKRDPYELLGVPENA-SQDEIKKAFHMLAKQYHPDANKN---NPSAKRKFQEIRDAYETLRDSEKRAQYDRRRS 149 (448)
Q Consensus 80 ~~~~~y~iLgv~~~a-~~~eIk~ayr~la~~~HPD~~~~---~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~ 149 (448)
...|||+||||+++| +.+|||+|||+|++++|||++++ .+.+.++|++|++||++|+||.+|+.||.++.
T Consensus 13 ~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~ 86 (109)
T 2qsa_A 13 GLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLD 86 (109)
T ss_dssp TTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred CCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcc
Confidence 456999999999999 99999999999999999999975 35688999999999999999999999999864
No 25
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.74 E-value=1.4e-18 Score=162.10 Aligned_cols=72 Identities=46% Similarity=0.760 Sum_probs=67.8
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhcccCCCC
Q 013183 82 RDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSE 153 (448)
Q Consensus 82 ~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~g~~ 153 (448)
.|||++|||+++|+.+|||+|||+|+++||||++++++++.++|++|++||++|+||.+|+.||+++..+..
T Consensus 2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~~ 73 (210)
T 3apq_A 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLE 73 (210)
T ss_dssp CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTTTCC
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhcccccc
Confidence 489999999999999999999999999999999988888999999999999999999999999999876543
No 26
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=99.73 E-value=4.1e-18 Score=158.68 Aligned_cols=100 Identities=19% Similarity=0.379 Sum_probs=76.4
Q ss_pred cccccccccccccccccCCCCchhhhhhhhcccCCCCCCCCCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCh
Q 013183 42 HKRGLYYCSSVTGTLADFGTTGMFLARRCIHATGSCYSSKRDPYELLGVPEN--ASQDEIKKAFHMLAKQYHPDANKNNP 119 (448)
Q Consensus 42 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~iLgv~~~--a~~~eIk~ayr~la~~~HPD~~~~~~ 119 (448)
....||+|...... .....+++..+...+++ ....|||++|||+++ ++.++||+|||+|+++||||++++++
T Consensus 9 ~~~~Cw~C~~~~~~----~~~~~~fC~~c~~~q~~--~~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~ 82 (207)
T 3bvo_A 9 NYPRCWNCGGPWGP----GREDRFFCPQCRALQAP--DPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRS 82 (207)
T ss_dssp --CBCSSSCCBCCS----SCSCCCBCTTTCCBCCC--CTTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSC
T ss_pred CCCCCCCCCCCccc----ccccccccccccccCCC--CCCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCC
Confidence 34568999853110 12234555556555433 345799999999986 79999999999999999999998654
Q ss_pred h-----HHHHHHHHHHHHHHhhhhhhhhhhhhc
Q 013183 120 S-----AKRKFQEIRDAYETLRDSEKRAQYDRR 147 (448)
Q Consensus 120 ~-----a~~~f~~i~~Ay~vL~d~~~R~~Yd~~ 147 (448)
+ +.++|++||+||+||+||.+|+.||..
T Consensus 83 ~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~~ 115 (207)
T 3bvo_A 83 QTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLK 115 (207)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 3 567899999999999999999999974
No 27
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=3.9e-18 Score=138.27 Aligned_cols=62 Identities=32% Similarity=0.552 Sum_probs=57.8
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhh
Q 013183 81 KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQ 143 (448)
Q Consensus 81 ~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~ 143 (448)
..|||+||||+++|+.+|||+|||+|+++||||++++ +.+.++|++|++||++|+||.+|+.
T Consensus 26 ~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~ 87 (90)
T 2ys8_A 26 SKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVA-PGSEDAFKAVVNARTALLKNIKSGP 87 (90)
T ss_dssp CSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCC-TTHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHHCCcccccC
Confidence 3699999999999999999999999999999999974 6788999999999999999999864
No 28
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=99.72 E-value=3.4e-18 Score=152.67 Aligned_cols=70 Identities=31% Similarity=0.588 Sum_probs=64.2
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh------hHHHHHHHHHHHHHHhhhhhhhhhhhhcc
Q 013183 79 SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNP------SAKRKFQEIRDAYETLRDSEKRAQYDRRR 148 (448)
Q Consensus 79 ~~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~------~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~ 148 (448)
+...|||+||||+++|+.++||+|||+|++++|||++++++ .+.++|++|++||++|+||.+|+.||..+
T Consensus 7 ~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~ 82 (155)
T 2l6l_A 7 MPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQR 82 (155)
T ss_dssp CCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHH
T ss_pred CCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 45679999999999999999999999999999999998653 36789999999999999999999999874
No 29
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.70 E-value=3.6e-18 Score=137.53 Aligned_cols=68 Identities=21% Similarity=0.238 Sum_probs=60.5
Q ss_pred CCCCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh-hHHHHHHHHHHHHHHhhhhhhhhh
Q 013183 76 SCYSSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNP-SAKRKFQEIRDAYETLRDSEKRAQ 143 (448)
Q Consensus 76 ~~~~~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~-~a~~~f~~i~~Ay~vL~d~~~R~~ 143 (448)
.......++|+||||+++|+.+|||+|||+||++||||++++++ .++++|++|++||++|+|...|..
T Consensus 10 ~~~~~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r~~ 78 (88)
T 1iur_A 10 PRGSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFLDQ 78 (88)
T ss_dssp CSSSCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred CCCccHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhccccc
Confidence 34456679999999999999999999999999999999998763 588999999999999999887743
No 30
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.69 E-value=1.6e-17 Score=131.33 Aligned_cols=62 Identities=18% Similarity=0.306 Sum_probs=56.5
Q ss_pred CCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhcc
Q 013183 82 RDPYELLGVPEN--ASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRR 148 (448)
Q Consensus 82 ~~~y~iLgv~~~--a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~ 148 (448)
.++|+||||+++ ++.+|||+|||+||+++|||++++ .++|++|++||++|+|+.+|..+ .+|
T Consensus 11 ~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~----~~~f~~i~~AYe~L~~~~~r~~~-~~g 74 (79)
T 1faf_A 11 ERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS----HALMQELNSLWGTFKTEVYNLRM-NLG 74 (79)
T ss_dssp HHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC----HHHHHHHHHHHHHHHHHHHHHTT-CCS
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC----HHHHHHHHHHHHHHhhHHHHHHH-hcC
Confidence 589999999999 999999999999999999999864 58999999999999999999874 453
No 31
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.68 E-value=3.9e-18 Score=143.92 Aligned_cols=65 Identities=23% Similarity=0.390 Sum_probs=60.2
Q ss_pred CCCcccccCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhccc
Q 013183 81 KRDPYELLGVPENASQ--DEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRS 149 (448)
Q Consensus 81 ~~~~y~iLgv~~~a~~--~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~ 149 (448)
..+||+||||+++|+. +|||+|||+||+++|||++++ .++|++|++||+||+||.+|+.||.++.
T Consensus 7 ~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~----~e~f~~I~~AYevL~d~~~R~~~~~~~~ 73 (114)
T 1gh6_A 7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMEDGVKYAHQPDFGG 73 (114)
T ss_dssp HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT----TTTTHHHHHHHHHHHHHHHSCCSSCCSC
T ss_pred hhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc----HHHHHHHHHHHHHHCCHHHHHHhhhccc
Confidence 3589999999999999 999999999999999999875 4799999999999999999999998754
No 32
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=99.68 E-value=2.6e-17 Score=149.49 Aligned_cols=68 Identities=31% Similarity=0.515 Sum_probs=62.1
Q ss_pred CCCcccccCCCCCCC--HHHHHHHHHHHHHHhCCCCCCCChh-----HHHHHHHHHHHHHHhhhhhhhhhhhhcc
Q 013183 81 KRDPYELLGVPENAS--QDEIKKAFHMLAKQYHPDANKNNPS-----AKRKFQEIRDAYETLRDSEKRAQYDRRR 148 (448)
Q Consensus 81 ~~~~y~iLgv~~~a~--~~eIk~ayr~la~~~HPD~~~~~~~-----a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~ 148 (448)
..|||+||||+++++ .++||+|||+|+++||||++++.+. +.++|+.|++||+||+||.+|+.||...
T Consensus 3 ~~d~Y~iLgl~~~a~id~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l 77 (174)
T 3hho_A 3 AMNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRAEYLLSL 77 (174)
T ss_dssp -CCHHHHTTCCSSSCCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred CCCHHHHcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHc
Confidence 469999999999987 9999999999999999999987654 6689999999999999999999999864
No 33
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.67 E-value=7.5e-18 Score=151.81 Aligned_cols=65 Identities=23% Similarity=0.386 Sum_probs=57.7
Q ss_pred CCCcccccCCCCCCC--HHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhccc
Q 013183 81 KRDPYELLGVPENAS--QDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRS 149 (448)
Q Consensus 81 ~~~~y~iLgv~~~a~--~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~ 149 (448)
..|||++|||+++|+ .+|||+|||+||+++|||++++ +++|++|++||++|+||.+|+.||++|.
T Consensus 10 ~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~----~e~F~~I~~AYevLsdp~kR~~YD~~G~ 76 (174)
T 2pf4_E 10 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMEDGVKYAHQPDFGG 76 (174)
T ss_dssp HHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---C----CTTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred cccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCC----HHHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence 359999999999998 6999999999999999999875 3789999999999999999999999975
No 34
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=99.65 E-value=5.4e-17 Score=146.96 Aligned_cols=66 Identities=30% Similarity=0.489 Sum_probs=61.2
Q ss_pred CcccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCChh-----HHHHHHHHHHHHHHhhhhhhhhhhhhcc
Q 013183 83 DPYELLGVPENA--SQDEIKKAFHMLAKQYHPDANKNNPS-----AKRKFQEIRDAYETLRDSEKRAQYDRRR 148 (448)
Q Consensus 83 ~~y~iLgv~~~a--~~~eIk~ayr~la~~~HPD~~~~~~~-----a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~ 148 (448)
|||++|||++++ +.++||+|||+|+++||||++++.++ +.++|+.|++||+||+||.+|+.||...
T Consensus 2 d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l 74 (171)
T 1fpo_A 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSL 74 (171)
T ss_dssp HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHT
T ss_pred CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHh
Confidence 899999999999 99999999999999999999987653 4579999999999999999999999974
No 35
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=99.64 E-value=8.1e-17 Score=145.95 Aligned_cols=63 Identities=22% Similarity=0.486 Sum_probs=59.4
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChh---HHHHHHHHHHHHHHhhhhhhhhhh
Q 013183 82 RDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPS---AKRKFQEIRDAYETLRDSEKRAQY 144 (448)
Q Consensus 82 ~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~---a~~~f~~i~~Ay~vL~d~~~R~~Y 144 (448)
.|||++|||+++|+.+|||+|||+|+++||||++++.+. |+++|++|++||++|+||.+|+.|
T Consensus 117 ~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y 182 (182)
T 1n4c_A 117 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY 182 (182)
T ss_dssp CCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred cchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence 699999999999999999999999999999999986553 789999999999999999999987
No 36
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.63 E-value=1.1e-16 Score=129.46 Aligned_cols=56 Identities=21% Similarity=0.440 Sum_probs=52.0
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh---hHHHHHHHHHHHHHHhhh
Q 013183 82 RDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNP---SAKRKFQEIRDAYETLRD 137 (448)
Q Consensus 82 ~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~---~a~~~f~~i~~Ay~vL~d 137 (448)
.++|++|||+++|+.+|||+|||++|++||||++++++ .|+++|++|++||+||.+
T Consensus 33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence 58999999999999999999999999999999998765 378899999999999986
No 37
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.61 E-value=3e-16 Score=121.43 Aligned_cols=59 Identities=15% Similarity=0.278 Sum_probs=52.8
Q ss_pred CCCCCcccccCCCC-CCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhh
Q 013183 79 SSKRDPYELLGVPE-NASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKR 141 (448)
Q Consensus 79 ~~~~~~y~iLgv~~-~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R 141 (448)
+...++|+||||++ +++.+|||+|||+|++++|||++++ .++|++|++||++|+|+..|
T Consensus 11 m~~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g~----~~~f~~i~~Aye~L~~~~~r 70 (71)
T 2guz_A 11 MNSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGS----PFLATKINEAKDFLEKRGIS 70 (71)
T ss_dssp CCHHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTCC----HHHHHHHHHHHHHHHHHCCC
T ss_pred CCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC----HHHHHHHHHHHHHHhhhhhc
Confidence 44569999999999 7999999999999999999999753 46999999999999998765
No 38
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=99.59 E-value=4.5e-16 Score=141.97 Aligned_cols=66 Identities=29% Similarity=0.491 Sum_probs=59.8
Q ss_pred CCCCccccc------CCCC-CCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhcc
Q 013183 80 SKRDPYELL------GVPE-NASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRR 148 (448)
Q Consensus 80 ~~~~~y~iL------gv~~-~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~ 148 (448)
...|||+|| |+++ +|+.++||+|||+|+++||||++++ +.++|++|++||+||+||.+|+.||...
T Consensus 9 ~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~---a~~~f~~i~~AY~vL~dp~~R~~Yd~~l 81 (181)
T 3uo3_A 9 FTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ---GSEQSSTLNQAYHTLKDPLRRSQYMLKL 81 (181)
T ss_dssp CSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS---CSSGGGSHHHHHHHHHSHHHHHHHHHHH
T ss_pred CCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc---HHHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence 346999999 4665 9999999999999999999999975 5789999999999999999999999964
No 39
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.57 E-value=5.5e-16 Score=129.11 Aligned_cols=58 Identities=12% Similarity=0.213 Sum_probs=51.7
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---Ch----hHHHHHHHHHHHHHHhhhhh
Q 013183 81 KRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKN---NP----SAKRKFQEIRDAYETLRDSE 139 (448)
Q Consensus 81 ~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~---~~----~a~~~f~~i~~Ay~vL~d~~ 139 (448)
..|||++||++. |+.+|||+|||+||++|||||+++ ++ .|+++|++|++||++|+|+.
T Consensus 40 ~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~ 104 (106)
T 3ag7_A 40 GSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG 104 (106)
T ss_dssp TSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence 469999999996 999999999999999999999863 22 36889999999999999975
No 40
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.56 E-value=3.7e-16 Score=172.75 Aligned_cols=75 Identities=44% Similarity=0.730 Sum_probs=40.9
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhhcccCCCC
Q 013183 79 SSKRDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDRRRSRGSE 153 (448)
Q Consensus 79 ~~~~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~~~~~g~~ 153 (448)
....|||++|||+++|+.+|||+|||+||++||||++++++++.++|++|++||++|+||.+|+.||++|..+..
T Consensus 18 ~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~~~~ 92 (780)
T 3apo_A 18 RHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLE 92 (780)
T ss_dssp -----CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC------
T ss_pred CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhcccccc
Confidence 456799999999999999999999999999999999987788999999999999999999999999999876654
No 41
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=99.32 E-value=9.9e-13 Score=103.62 Aligned_cols=74 Identities=38% Similarity=0.885 Sum_probs=64.7
Q ss_pred cccceeeeceeeeCCCCCCCCccCCCccccCCCccceeEEEeC----CccccCCCcCCceEEeeecceeecCCcEEec
Q 013183 219 GCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGIGRVTIP----PFTSTCSTCKGLGRIIKDHCMTCKGSGVVDG 292 (448)
Q Consensus 219 G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~----~~~~~C~~C~G~G~~~~~~C~~C~g~G~~~~ 292 (448)
|.+++|.+++.+.|+.|+|+|........+|+.|+|.|.+... .++.+|+.|+|.|++++++|..|+|.|++.+
T Consensus 1 G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~~~~ 78 (79)
T 1exk_A 1 GVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLIKDPCNKCHGHGRVER 78 (79)
T ss_dssp CTTTSCCCCCEEECGGGTTTSBCSSSCCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEECSSBCGGGTTSSEEEC
T ss_pred CcEEEEEcccceECCCCcccccCCCccCCCCCCCcCeEEEEEEcCCCEEeeECcCCCCccEECCCcCCCCCCeEEEee
Confidence 6788999999999999999998776667899999999987532 2357999999999999999999999998864
No 42
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=99.29 E-value=3.1e-12 Score=122.46 Aligned_cols=109 Identities=25% Similarity=0.421 Sum_probs=81.1
Q ss_pred eeeCCCCCCCCccCC---------CccccCCCccceeEEEeCCccccCCCcCCceEEeeecceeecCC-cEEeceE----
Q 013183 229 FVPCDSCHGRGFPAD---------AKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDHCMTCKGS-GVVDGVK---- 294 (448)
Q Consensus 229 ~~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~C~~C~g~-G~~~~~~---- 294 (448)
...|+.|+|+|.... ....+|+.|+|.|.++. ...+|..|+|.|.+.+..-.+...+ |+.++.+
T Consensus 54 ~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~--~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~ir~~ 131 (248)
T 1nlt_A 54 VKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIID--PKDRCKSCNGKKVENERKILEVHVEPGMKDGQRIVFK 131 (248)
T ss_dssp CCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCC--TTSBCSSSTTSCEEEEEEEEEEEECTTCCTTCEEEET
T ss_pred CccCCCCCCCcEEEEEEecCceEEEEEEcCCCCCCcCEEec--cCCCCcccCCCceEeeeEEEEEEECCCccCCCEEEEe
Confidence 378999999997421 23568999999997631 2679999999998765444444332 3333222
Q ss_pred ----------------------------------------------------------EEEEEecCC--CCCCCEEEECC
Q 013183 295 ----------------------------------------------------------EVKVTIPAG--VDSGDTIRVPE 314 (448)
Q Consensus 295 ----------------------------------------------------------~l~V~IppG--~~~G~~i~~~g 314 (448)
.++|.|||| +++|++++++|
T Consensus 132 g~G~~~~~g~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~~i~ip~g~vt~~g~~~rl~g 211 (248)
T 1nlt_A 132 GEADQAPDVIPGDVVFIVSERPHKSFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEG 211 (248)
T ss_dssp TCSCCCTTCBCCCEEEEEEECCCSSCEEETTEEEEEEEEEHHHHHHCBCCEEECSSSCEEECCBCTTTTCSTTCEEEETT
T ss_pred eeecCCCCCCcceEEEEEEEecCccceeeCCEEEEEEEeCHHHHhcCCEEEEeCCCCCEEEEEeCCCCeeCCCeEEEEcC
Confidence 589999999 99999999999
Q ss_pred CCCCCCCCCCcccEEEEEEEecCCC
Q 013183 315 AGNAGGRGRQHGNLFIKLKVADDPI 339 (448)
Q Consensus 315 ~G~~~~~g~~~GDL~v~i~v~~h~~ 339 (448)
+|.+...+...|||||+|+|.-...
T Consensus 212 ~Gmp~~~~~~~GDL~V~~~V~~P~~ 236 (248)
T 1nlt_A 212 KGMPIPKYGGYGNLIIKFTIKDPEN 236 (248)
T ss_dssp CSCBCSSSCSBCCEEEEEEEECCC-
T ss_pred CCCccCCCCCcCCEEEEEEEECCCC
Confidence 9998654446799999999985443
No 43
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.91 E-value=6.4e-10 Score=112.23 Aligned_cols=65 Identities=46% Similarity=0.710 Sum_probs=55.7
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC---hhHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 013183 82 RDPYELLGVPENASQDEIKKAFHMLAKQYHPDANKNN---PSAKRKFQEIRDAYETLRDSEKRAQYDR 146 (448)
Q Consensus 82 ~~~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~---~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~ 146 (448)
.++|++||+.+.++.++|+++|+++++++|||+.+.+ ..++++|++|++||++|+||.+|..||+
T Consensus 382 ~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~ 449 (450)
T 2y4t_A 382 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD 449 (450)
T ss_dssp CCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred hhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence 4899999999999999999999999999999998753 2478899999999999999999999997
No 44
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}
Probab=98.79 E-value=3.5e-09 Score=88.42 Aligned_cols=76 Identities=22% Similarity=0.346 Sum_probs=61.8
Q ss_pred cCCCCcEEEeeeehhhhcccccceeeeceeeeCCCCCCCCccCCCccccCCCccceeEEEeCCccccCCCcCCceEEeee
Q 013183 200 HFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKD 279 (448)
Q Consensus 200 ~~g~di~~~l~isl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~ 279 (448)
+.|.|+.+++.|+|.||+.|++.++..-
T Consensus 9 R~G~DL~~~~~Isl~eAl~G~~i~v~tl---------------------------------------------------- 36 (109)
T 3i38_A 9 IVGHNLEIVLPLAPWEAALGAKVTVPTL---------------------------------------------------- 36 (109)
T ss_dssp EETTEEEEEEEECHHHHHHCEEEEECCS----------------------------------------------------
T ss_pred EECCEEEEEEEcCHHHHhCCCEEEEEcC----------------------------------------------------
Confidence 3578999999999999999987665421
Q ss_pred cceeecCCcEEeceEEEEEEecCCCCCCCEEEECCCCCCCCCCCCcccEEEEEEEecCCCccc
Q 013183 280 HCMTCKGSGVVDGVKEVKVTIPAGVDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPIFSR 342 (448)
Q Consensus 280 ~C~~C~g~G~~~~~~~l~V~IppG~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R 342 (448)
.+ .++|.||+|+++|++++++|+|.+. .+ ..|||||+|+|.-......
T Consensus 37 -----------dG--~~~v~ip~g~~~G~~~rl~G~G~p~-~~-~~GDL~v~~~V~~P~~Ls~ 84 (109)
T 3i38_A 37 -----------KE--SILLTVPPGSQAGQRLRIKGKGLVS-KT-HTGDLFAVIKIVMPTKPDE 84 (109)
T ss_dssp -----------SS--CEEEEECTTCCTTCEEEETTCSCBC-SS-CBCCEEEEEEECCCSSCCH
T ss_pred -----------CC--CEEEeeCCCcCcCeEEEECCccCCC-CC-CCcCEEEEEEEECCCCCCH
Confidence 11 3689999999999999999999987 34 7899999999986554443
No 45
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=98.77 E-value=5.4e-09 Score=78.66 Aligned_cols=52 Identities=17% Similarity=0.232 Sum_probs=46.0
Q ss_pred CcccccCCCCC---CCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhh
Q 013183 83 DPYELLGVPEN---ASQDEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDS 138 (448)
Q Consensus 83 ~~y~iLgv~~~---a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~ 138 (448)
+.|.||||+++ ++.++|+++||+|....|||+.+. .....+|++|+++|...
T Consensus 5 EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS----~yl~~ki~~Ake~l~~~ 59 (65)
T 2guz_B 5 ESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGS----FYLQSKVYRAAERLKWE 59 (65)
T ss_dssp HHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCC----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHHHHH
Confidence 56899999999 999999999999999999999764 45667899999999754
No 46
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}
Probab=98.73 E-value=9.1e-09 Score=87.53 Aligned_cols=81 Identities=20% Similarity=0.146 Sum_probs=60.7
Q ss_pred cCCCCcEEEeeeehhhhcccccceeeeceeeeCCCCCCCCccCCCccccCCCccceeEEEeCCccccCCCcCCceEEeee
Q 013183 200 HFAPDIQVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADAKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKD 279 (448)
Q Consensus 200 ~~g~di~~~l~isl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~ 279 (448)
+.|.|+.+++.|+|.||+.|++..+.--
T Consensus 4 R~G~DL~~~~~Isl~eAllG~~i~v~tl---------------------------------------------------- 31 (121)
T 1xao_A 4 RDGDDLVYEAEIDLLTAIAGGEFALEHV---------------------------------------------------- 31 (121)
T ss_dssp EETTEEEEEEEEEHHHHHHCEEEEEECT----------------------------------------------------
T ss_pred EECCeEEEEEEcCHHHHhCCCEEEEecC----------------------------------------------------
Confidence 4588999999999999999987665421
Q ss_pred cceeecCCcEEeceEEEEEEecCC--CCCCCEEEECCCCCCCCCCCCcccEEEEEEEecCCC--cccCC
Q 013183 280 HCMTCKGSGVVDGVKEVKVTIPAG--VDSGDTIRVPEAGNAGGRGRQHGNLFIKLKVADDPI--FSRDG 344 (448)
Q Consensus 280 ~C~~C~g~G~~~~~~~l~V~IppG--~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~--f~R~G 344 (448)
..+.++|.|||| +++|++++++|+|.+...+...|||||+|+|.-+.. +..+.
T Consensus 32 ------------dG~~~~v~ip~g~v~~~G~~~rl~G~Gmp~~~~~~~GDL~V~~~V~~P~~~~ls~~q 88 (121)
T 1xao_A 32 ------------SGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIKFPENHFTSEEN 88 (121)
T ss_dssp ------------TSCEEEEEECTTSCCCTTCEEEETTCSCC------CCCEEEEEEEECCCTTCSCHHH
T ss_pred ------------CCCEEEEEeCCCCeeCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCCCHHH
Confidence 012578999999 999999999999998754446799999999995554 44444
No 47
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}
Probab=98.63 E-value=5.5e-08 Score=88.45 Aligned_cols=69 Identities=20% Similarity=0.275 Sum_probs=58.3
Q ss_pred CCceEEEeecCHHHHhcCCEEEEeCCC------------CeEEEEeCCCCCCCcEEEEcCCCCC-CCCCCCCCCcEEEEE
Q 013183 344 GADVYVDSNISFTQAILGGKVDVPTLS------------GKVQVKIPKGVQPGQLLVLRGKGLA-KNGLFLDHGDQYVRF 410 (448)
Q Consensus 344 G~DL~~~~~I~l~eAl~G~~~~i~tld------------G~~~v~ip~g~~~g~~~~l~g~G~p-~~~~~~~~GDL~V~~ 410 (448)
|.|+.+++.|||.||+.|++++|.... ..++|+||+|+.+|++++++|+|-+ ..+. ..|||||++
T Consensus 3 g~d~~~~l~islee~~~G~~k~i~~~~~~~c~~g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~g~~gg--~~GDl~v~i 80 (180)
T 2q2g_A 3 PRSHEVPLLVTLEELYLGKRKKIKVTRKRFIEHKVRNEENIVEVEIKPGWKDGTKLTYSGEGDQESPGT--SPGDLVLII 80 (180)
T ss_dssp -CEEEEEEEECHHHHHHCEEEEEEEEEEEEETTEEEEEEEEEEEEECTTCCTTCEEEETTCSCCSSTTS--CCCEEEEEE
T ss_pred CCCEEEEEEeeHHHhcCCcEEEEEEeEEEecCCceEEeeEEEEEEECCCCcCCcEEEEeeccCCCCCCC--ccccEEEEE
Confidence 789999999999999999998887532 2379999999999999999999987 4443 369999999
Q ss_pred EEEC
Q 013183 411 RVNF 414 (448)
Q Consensus 411 ~V~~ 414 (448)
++.=
T Consensus 81 ~~~~ 84 (180)
T 2q2g_A 81 QTKT 84 (180)
T ss_dssp EECC
T ss_pred EEEe
Confidence 9874
No 48
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=98.59 E-value=4.7e-08 Score=97.04 Aligned_cols=72 Identities=22% Similarity=0.374 Sum_probs=57.3
Q ss_pred cCCCceEEEeecCHHHHhcCCEEEEeCC------CC--------eEEEEeCCCCCCCcEEEEcCCCCCCCCCCCCCCcEE
Q 013183 342 RDGADVYVDSNISFTQAILGGKVDVPTL------SG--------KVQVKIPKGVQPGQLLVLRGKGLAKNGLFLDHGDQY 407 (448)
Q Consensus 342 R~G~DL~~~~~I~l~eAl~G~~~~i~tl------dG--------~~~v~ip~g~~~g~~~~l~g~G~p~~~~~~~~GDL~ 407 (448)
+.|.||.+++.|+|.||+.|+++.|... .| .++|+||+|+++|++||++|+|.|..+. +..||||
T Consensus 138 ~~g~Dl~~~l~vsleea~~G~~k~i~i~~~v~~g~G~v~~~~~~~l~V~IP~Gv~~G~~Irl~G~G~~g~~g-g~~GDL~ 216 (329)
T 3lz8_A 138 ARGHDLEIEVAVFLEETLAEQTRTISYNLPVYNVFGMIESETPKTLNVKIPAGVVDGQRIRLKGQGTPGENG-GPNGDLW 216 (329)
T ss_dssp CCCCCEEEEECCCTTGGGSCEEEEEEEEEEECCSCC-CCEEEEEEEEEEECTTCCTTCEEEESSCSCCC----CCCCCEE
T ss_pred CCCCCEEEEEecchhhhhhccceEEEEEEEeecCCeEEEEecceEEEEeCCCCCCCCCEEEEcccccCCCCC-CCCCcEE
Confidence 5688999999999999999987766543 22 3689999999999999999999986522 2469999
Q ss_pred EEEEEEC
Q 013183 408 VRFRVNF 414 (448)
Q Consensus 408 V~~~V~~ 414 (448)
|+|+|.=
T Consensus 217 v~I~v~~ 223 (329)
T 3lz8_A 217 LVIHIAP 223 (329)
T ss_dssp EEECCCC
T ss_pred EEEEEec
Confidence 9988764
No 49
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A
Probab=98.58 E-value=9e-08 Score=86.22 Aligned_cols=70 Identities=13% Similarity=0.184 Sum_probs=58.1
Q ss_pred CceEEEeecCHHHHhcCCEEEEeCC----CC-----eEEEEeCCCCCCCcEEEEcCCCCCCC-CCCCCCCcEEEEEEEEC
Q 013183 345 ADVYVDSNISFTQAILGGKVDVPTL----SG-----KVQVKIPKGVQPGQLLVLRGKGLAKN-GLFLDHGDQYVRFRVNF 414 (448)
Q Consensus 345 ~DL~~~~~I~l~eAl~G~~~~i~tl----dG-----~~~v~ip~g~~~g~~~~l~g~G~p~~-~~~~~~GDL~V~~~V~~ 414 (448)
.|+.+++.|||.||+.|++++|... .| .++|+||+|+.+|++++++|+|-+.. +. ..|||||++++.=
T Consensus 1 ~d~~~~l~islee~~~G~~k~i~~~~~~~~G~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~~~~gg--~~GDl~v~i~v~~ 78 (170)
T 1c3g_A 1 ETVQVNLPVSLEDLFVGKKKSFKIGRKGPHGASEKTQIDIQLKPGWKAGTKITYKNQGDYNPQTG--RRKTLQFVIQEKS 78 (170)
T ss_dssp CEEEEEEEECHHHHHHTCEEEEEEEEEETTTEEEEEEEEEECCTTCCTTCEEEESSCSSBCSSSS--CBCEEEEEEEECC
T ss_pred CCEEEEEEeEHHHhhCCcEEEEEEEEecCCCcEEeEEEEEEeCCCccCCCEEEEeccccCCCCCC--ccccEEEEEEEcc
Confidence 3889999999999999999988753 12 37999999999999999999998643 32 3699999999874
Q ss_pred CC
Q 013183 415 PT 416 (448)
Q Consensus 415 P~ 416 (448)
..
T Consensus 79 h~ 80 (170)
T 1c3g_A 79 HP 80 (170)
T ss_dssp CS
T ss_pred CC
Confidence 33
No 50
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A
Probab=98.57 E-value=9.2e-08 Score=87.02 Aligned_cols=70 Identities=14% Similarity=0.161 Sum_probs=56.1
Q ss_pred CCceEEEeecCHHHHhcCCEEEEeCC------CC--------eEEEEeCCCCCCCcEEEEcCCCCCCCCCCCCCCcEEEE
Q 013183 344 GADVYVDSNISFTQAILGGKVDVPTL------SG--------KVQVKIPKGVQPGQLLVLRGKGLAKNGLFLDHGDQYVR 409 (448)
Q Consensus 344 G~DL~~~~~I~l~eAl~G~~~~i~tl------dG--------~~~v~ip~g~~~g~~~~l~g~G~p~~~~~~~~GDL~V~ 409 (448)
|.|+.+++.|||.||+.|++++|... .| .++|+||+|+.+|++++++|+|-+..+. ..|||||.
T Consensus 2 ~~d~~~~l~islee~~~G~~k~i~i~~~c~~c~G~g~~~~~~~l~V~Ip~G~~~G~~ir~~G~G~~~~~g--~~GDl~v~ 79 (181)
T 3agx_A 2 DPPVTHDLRVSLEEIYSGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTSNN--IPADIVFV 79 (181)
T ss_dssp ----CEEEEECHHHHHHCEEEEEEEEEEEECTTSSCEEEEEEEEEEEECTTCCTTCEEEETTCSCCCSSS--CCCCEEEE
T ss_pred CCCEEEEEEEEHHHhcCCcEEEEEEecccCCCCCceEEEEeEEEEEEECCCccCCcEEEEeeccccCCCC--CcccEEEE
Confidence 56899999999999999999888642 23 2689999999999999999999986543 46999999
Q ss_pred EEEECC
Q 013183 410 FRVNFP 415 (448)
Q Consensus 410 ~~V~~P 415 (448)
+++.=.
T Consensus 80 i~~~~h 85 (181)
T 3agx_A 80 LKDKPH 85 (181)
T ss_dssp EEECCC
T ss_pred EEEecc
Confidence 998743
No 51
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=97.46 E-value=3.3e-05 Score=55.38 Aligned_cols=31 Identities=35% Similarity=0.811 Sum_probs=24.1
Q ss_pred ccccCCCcCCceEEeeecceeecCCcEEece
Q 013183 263 FTSTCSTCKGLGRIIKDHCMTCKGSGVVDGV 293 (448)
Q Consensus 263 ~~~~C~~C~G~G~~~~~~C~~C~g~G~~~~~ 293 (448)
++++|+.|+|+|.++.++|+.|+|.|++.+.
T Consensus 8 ~~~~C~~C~GsG~~i~~~C~~C~G~G~v~~~ 38 (53)
T 3lcz_A 8 LETTCPNCNGSGREEPEPCPKCLGKGVILTA 38 (53)
T ss_dssp HEEECTTTTTSCEETTEECTTTTTSSEEECH
T ss_pred eeccCcCCcccccCCCCcCCCCCCcEEEEEE
Confidence 4677888888888888888888888876643
No 52
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=97.41 E-value=6.6e-05 Score=58.35 Aligned_cols=47 Identities=32% Similarity=0.807 Sum_probs=36.4
Q ss_pred eeeeCCCCCCCCccCC-----CccccCCCccceeEEEeCCccccCCCcCCceEEee
Q 013183 228 AFVPCDSCHGRGFPAD-----AKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIK 278 (448)
Q Consensus 228 ~~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~ 278 (448)
....|+.|+|+|.... .....|+.|+|.|.+ +..+|+.|+|.|.+.+
T Consensus 27 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~----~~~~C~~C~G~G~~~~ 78 (79)
T 1exk_A 27 QPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTL----IKDPCNKCHGHGRVER 78 (79)
T ss_dssp CCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEE----CSSBCGGGTTSSEEEC
T ss_pred cCCCCCCCcCeEEEEEEcCCCEEeeECcCCCCccEE----CCCcCCCCCCeEEEee
Confidence 3568999999996532 123589999999987 4678999999998753
No 53
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.37 E-value=0.0001 Score=60.51 Aligned_cols=48 Identities=27% Similarity=0.711 Sum_probs=38.6
Q ss_pred eeeCCCCCCCCccCC-----CccccCCCccceeEEEeCCccccCCCcCCceEEeeec
Q 013183 229 FVPCDSCHGRGFPAD-----AKTKICSTCRGIGRVTIPPFTSTCSTCKGLGRIIKDH 280 (448)
Q Consensus 229 ~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~ 280 (448)
...|+.|+|+|.... ....+|+.|+|.|.+ +..+|+.|+|.|.+.+.+
T Consensus 45 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~----i~~~C~~C~G~G~v~~~k 97 (104)
T 2ctt_A 45 VQHCHYCGGSGMETINTGPFVMRSTCRRCGGRGSI----IISPCVVCRGAGQAKQKK 97 (104)
T ss_dssp CEECSSSSSSCEEEEEETTEEEEEECSSSSSSSEE----CSSCCSSSSSCSEECCCC
T ss_pred CccCCCCCCCEEEEEEeCCEEEEEECCcCCCcceE----CCCcCCCCCCeeEEEEEE
Confidence 478999999996421 234689999999998 467999999999987654
No 54
>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}
Probab=97.36 E-value=1.1e-05 Score=86.35 Aligned_cols=51 Identities=14% Similarity=0.266 Sum_probs=46.2
Q ss_pred EEEeeeehhhhcccccceeeeceeeeCCCCCCCCccCCC---ccccCCCcccee
Q 013183 206 QVELVLSFAEAAKGCTKHVSFDAFVPCDSCHGRGFPADA---KTKICSTCRGIG 256 (448)
Q Consensus 206 ~~~l~isl~e~~~G~~~~i~~~~~~~C~~C~G~G~~~~~---~~~~C~~C~G~G 256 (448)
.+++.|+|+|+..|.++++.+.+...|..|+|+|...+. ...+|+.|+|..
T Consensus 168 ~~~l~i~feeA~~G~~k~i~v~~~~~C~tCHGsGA~~Gt~~~~~~tC~tCHGs~ 221 (669)
T 3pmq_A 168 ITNQHYDWQSSGNMLAYTRNLVSIDTCNSCHSNLAFHGGRYNQVETCVTCHNSK 221 (669)
T ss_dssp SCCCEEEEECSSSSCCCCCCCCCSHHHHHHHSSCCTTTTTSCSSSCSTTTSSTT
T ss_pred eEEEEEEhHHhhCCCceEEEeccCCcCCCCCCCCCcCCccCcCCccCCCCCCCc
Confidence 467889999999999999999999999999999998776 578999999983
No 55
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=96.69 E-value=0.00056 Score=48.95 Aligned_cols=11 Identities=45% Similarity=1.129 Sum_probs=4.8
Q ss_pred cCCCcCCceEE
Q 013183 266 TCSTCKGLGRI 276 (448)
Q Consensus 266 ~C~~C~G~G~~ 276 (448)
+|+.|+|.|.+
T Consensus 25 ~C~~C~G~G~v 35 (53)
T 2bx9_A 25 PCPACSGKGVI 35 (53)
T ss_dssp ECTTTTTSSEE
T ss_pred CCccCCCCccE
Confidence 34444444443
No 56
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=96.63 E-value=0.00091 Score=47.83 Aligned_cols=26 Identities=38% Similarity=0.917 Sum_probs=13.4
Q ss_pred cCCCccceeEEEeCCccccCCCcCCceEEe
Q 013183 248 ICSTCRGIGRVTIPPFTSTCSTCKGLGRII 277 (448)
Q Consensus 248 ~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~ 277 (448)
+|+.|+|+|.+ +..+|+.|+|.|.+.
T Consensus 11 ~C~~C~GsG~~----i~~~C~~C~G~G~v~ 36 (53)
T 3lcz_A 11 TCPNCNGSGRE----EPEPCPKCLGKGVIL 36 (53)
T ss_dssp ECTTTTTSCEE----TTEECTTTTTSSEEE
T ss_pred cCcCCcccccC----CCCcCCCCCCcEEEE
Confidence 44444444444 234566666666554
No 57
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=96.53 E-value=0.0012 Score=47.31 Aligned_cols=26 Identities=31% Similarity=0.736 Sum_probs=12.6
Q ss_pred eeCCCCCCCCccCCCccccCCCccceeEE
Q 013183 230 VPCDSCHGRGFPADAKTKICSTCRGIGRV 258 (448)
Q Consensus 230 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~ 258 (448)
..|+.|+|+|... ..+|+.|+|.|.+
T Consensus 10 ~~C~~C~GsG~~~---~~~C~~C~G~G~v 35 (53)
T 2bx9_A 10 VACPKCERAGEIE---GTPCPACSGKGVI 35 (53)
T ss_dssp EECTTTTTSSEET---TEECTTTTTSSEE
T ss_pred ccCCCCcceeccC---CCCCccCCCCccE
Confidence 3455555555432 1345555555554
No 58
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=87.49 E-value=0.31 Score=52.32 Aligned_cols=48 Identities=15% Similarity=0.267 Sum_probs=38.2
Q ss_pred CCCCCcccccCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHH
Q 013183 79 SSKRDPYELLGVPENASQ--DEIKKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYET 134 (448)
Q Consensus 79 ~~~~~~y~iLgv~~~a~~--~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~v 134 (448)
...++||.+||++.++.. .+|++|||+||+..+++ .+++..|..|+.|
T Consensus 626 ~~~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~--------~~r~~lvd~a~~v 675 (681)
T 2pzi_A 626 DNKASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ--------RHRYTLVDMANKV 675 (681)
T ss_dssp SCCCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH--------HHHHHHHHHHHHH
T ss_pred ccCCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh--------HHHHHHHHHhccc
Confidence 445579999999776655 67999999999965533 5789999999876
No 59
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=39.01 E-value=91 Score=29.16 Aligned_cols=59 Identities=20% Similarity=0.287 Sum_probs=27.7
Q ss_pred ccCCCcCCceEEee-ecceeecCCcEEeceEEEEEEecCC-CCCCC---EEEECCCCCCCCCCCCcccEEEE
Q 013183 265 STCSTCKGLGRIIK-DHCMTCKGSGVVDGVKEVKVTIPAG-VDSGD---TIRVPEAGNAGGRGRQHGNLFIK 331 (448)
Q Consensus 265 ~~C~~C~G~G~~~~-~~C~~C~g~G~~~~~~~l~V~IppG-~~~G~---~i~~~g~G~~~~~g~~~GDL~v~ 331 (448)
..|+.|++.|.... ..|. .....+++|+=+|. +..|+ .+.+-=.++-. ....|||-+.+
T Consensus 157 ~~Cp~C~~~~f~l~~~~s~-------f~D~Q~ikiQE~pe~vp~G~~Prsi~V~l~~dLv-d~~~PGDrV~v 220 (279)
T 1ltl_A 157 SLCSECGGRSFRLLQDESE-------FLDTQTLKLQEPLENLSGGEQPRQITVVLEDDLV-DTLTPGDIVRV 220 (279)
T ss_dssp SCCTTTCCCCEEECGGGCE-------EEEEEEEEEECCSTTCCSSCCCCEEEEEEEGGGT-TCCCTTCEEEE
T ss_pred CcCCCCCCCCcEEeccccE-------EEeeEEEEEecCcccCCCCCCCeEEEEEEccccc-CccCCCCEEEE
Confidence 46777877774332 2222 22344566664433 34443 22232233332 24467776653
No 60
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=27.40 E-value=66 Score=22.93 Aligned_cols=42 Identities=19% Similarity=0.203 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 013183 100 KKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDR 146 (448)
Q Consensus 100 k~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~ 146 (448)
.+.+|...+.-||+... .+..+.|.+.|..|++.++....+.
T Consensus 14 ~~~~r~~~~~~~p~~~~-----~eisk~lg~~Wk~ls~~eK~~y~~~ 55 (71)
T 4a3n_A 14 AKDERKRLAQQNPDLHN-----AELSKMLGKSWKALTLAEKRPFVEE 55 (71)
T ss_dssp HHHHHHHHHTTCTTSCH-----HHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 45667777888888652 5677889999999998777655554
No 61
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=27.22 E-value=20 Score=35.95 Aligned_cols=14 Identities=14% Similarity=0.506 Sum_probs=9.0
Q ss_pred cccCCCcCCceEEe
Q 013183 264 TSTCSTCKGLGRII 277 (448)
Q Consensus 264 ~~~C~~C~G~G~~~ 277 (448)
...|+.|+=+-.-+
T Consensus 249 s~~C~~CGyr~neV 262 (404)
T 2qkd_A 249 ATNCENCGHRTNEV 262 (404)
T ss_dssp EEECSSSCCEEEEE
T ss_pred EEECCCCCCcccce
Confidence 56788887654433
No 62
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=27.14 E-value=22 Score=35.55 Aligned_cols=20 Identities=30% Similarity=0.351 Sum_probs=15.4
Q ss_pred EEEEEecCCCCCCCEEEECC
Q 013183 295 EVKVTIPAGVDSGDTIRVPE 314 (448)
Q Consensus 295 ~l~V~IppG~~~G~~i~~~g 314 (448)
++.+.||||...|..-++.|
T Consensus 93 EL~~eI~pg~~~G~iTTVEG 112 (404)
T 2qkd_A 93 ELDFEIPAFSQKGALTTVEG 112 (404)
T ss_dssp GGTEEECTTSSCCEEEEHHH
T ss_pred eeeEEecCccCCceEEeHHH
Confidence 45677899998887777754
No 63
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=25.80 E-value=90 Score=23.39 Aligned_cols=53 Identities=19% Similarity=0.285 Sum_probs=38.4
Q ss_pred CHHHHHHHHHHHHHHhCCCCCCCCh--hHHHHHHHHHHHHHHhhh-hhhhhhhhhcc
Q 013183 95 SQDEIKKAFHMLAKQYHPDANKNNP--SAKRKFQEIRDAYETLRD-SEKRAQYDRRR 148 (448)
Q Consensus 95 ~~~eIk~ayr~la~~~HPD~~~~~~--~a~~~f~~i~~Ay~vL~d-~~~R~~Yd~~~ 148 (448)
-..-++.+|+.+.+...|....... .+..+|..-. +|..+.+ ..++.+|+.|.
T Consensus 7 r~rrl~~~F~~mLk~~~p~I~~~s~We~vr~~~e~~~-~fkav~~E~eR~~lFeeYi 62 (77)
T 2cqn_A 7 GMKRKESAFKSMLKQAAPPIELDAVWEDIRERFVKEP-AFEDITLESERKRIFKDFM 62 (77)
T ss_dssp SHHHHHHHHHHHHHTCSSCCCTTCCHHHHHHHHTTSH-HHHTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHccCH-HHHhcCCHHHHHHHHHHHH
Confidence 4456889999998888888776543 3555565443 8998865 67888888874
No 64
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=23.73 E-value=58 Score=24.85 Aligned_cols=50 Identities=18% Similarity=0.237 Sum_probs=26.8
Q ss_pred eeeeCCCCCCCCccCCCc--cccCCCccceeEEEeC----CccccCCCcCCceEEe
Q 013183 228 AFVPCDSCHGRGFPADAK--TKICSTCRGIGRVTIP----PFTSTCSTCKGLGRII 277 (448)
Q Consensus 228 ~~~~C~~C~G~G~~~~~~--~~~C~~C~G~G~~~~~----~~~~~C~~C~G~G~~~ 277 (448)
+.+.|..|...|.....= ...|-.|...|.+... .-...|-.|+..|.+-
T Consensus 4 k~~~C~~Cg~~GH~~~~Cp~~~rcY~c~~~gh~~~~c~~p~~~~~CYnCG~~GH~~ 59 (83)
T 3nyb_B 4 KKVQCTLCKSKKHSKERCPSIWRAYILVDDNEKAKPKVLPFHTIYCYNCGGKGHFG 59 (83)
T ss_dssp ---CCSSSCCSSSCGGGCGGGTCCCCBC-------------CCCBCSSSSCBSSCG
T ss_pred ccCCCCCCCCCCCccccCCCcccccccccCCcccccccCCCCCCeecccCCCCcCc
Confidence 456799999988765432 2357778877764321 1246788888888643
No 65
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*
Probab=23.44 E-value=4.9 Score=41.95 Aligned_cols=57 Identities=21% Similarity=0.415 Sum_probs=36.7
Q ss_pred eCCCCCCCCccCC-----CccccCCCccceeEEEe----------C---C-ccccCCCcCCceEEeeecceeecCC
Q 013183 231 PCDSCHGRGFPAD-----AKTKICSTCRGIGRVTI----------P---P-FTSTCSTCKGLGRIIKDHCMTCKGS 287 (448)
Q Consensus 231 ~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~----------~---~-~~~~C~~C~G~G~~~~~~C~~C~g~ 287 (448)
.|..|++...... .....|-.|+....... . . -...|..||..=......|..|+..
T Consensus 13 ~C~~CH~~~~~~~~~~~~~~~~~C~~CH~~~~~~~~~~~~~~~~~h~~H~~~~~~C~~CH~~h~~~~~~C~~CH~~ 88 (571)
T 1y0p_A 13 ECDSCHTPDGELSNDSLTYENTQCVSCHGTLAEVAETTKHEHYNAHASHFPGEVACTSCHSAHEKSMVYCDSCHSF 88 (571)
T ss_dssp CGGGTSCTTCCCCCTTCHHHHHHHHHHHCCHHHHHTTSCCSSCCTTSCSCCSCCCGGGTCCSSSCBCCGGGGTCCC
T ss_pred ChhhcCCCcccccccccccccchhhhhCcChhhcccccccccCCccccccCCCCCccccCccccCCCccccccChh
Confidence 7999998764321 13468999997532100 0 0 1457999997754456789999864
No 66
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=22.94 E-value=1.1e+02 Score=22.09 Aligned_cols=42 Identities=10% Similarity=0.156 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 013183 100 KKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDR 146 (448)
Q Consensus 100 k~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~ 146 (448)
.+.+|...+.-||+... .+..+.|.+.|..|++.++....+.
T Consensus 16 ~~~~r~~~~~~~p~~~~-----~eisk~lg~~Wk~ls~~eK~~y~~~ 57 (76)
T 1hry_A 16 SRDQRRKMALENPRMRN-----SEISKQLGYQWKMLTEAEKWPFFQE 57 (76)
T ss_dssp HHHHHHHHHHHCSCCSS-----SHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCCH-----HHHHHHHHhHHHhCCHHHHHHHHHH
Confidence 35566667777998764 2566889999999997776655444
No 67
>3zxf_A Galectin-7; sugar binding protein; 1.38A {Homo sapiens} SCOP: b.29.1.3 PDB: 1bkz_A 2gal_A* 3gal_A* 4gal_A* 5gal_A* 3zxe_A*
Probab=22.76 E-value=1.1e+02 Score=25.43 Aligned_cols=43 Identities=23% Similarity=0.422 Sum_probs=31.5
Q ss_pred EEEeCCCCCCCcEEEEcCCCCCCCCC--------CCCCCcEEEEEEEECCC
Q 013183 374 QVKIPKGVQPGQLLVLRGKGLAKNGL--------FLDHGDQYVRFRVNFPT 416 (448)
Q Consensus 374 ~v~ip~g~~~g~~~~l~g~G~p~~~~--------~~~~GDL~V~~~V~~P~ 416 (448)
.-.||.|.++|+.++|.|.=.+..+. .....|+.++|++.|.+
T Consensus 9 ~~~i~~gl~~G~~i~I~G~v~~~a~rF~Inl~~g~~~~~dialHfnpRf~~ 59 (138)
T 3zxf_A 9 KSSLPEGIRPGTVLRIRGLVPPNASRFHVNLLCGEEQGSDAALHFNPRLDT 59 (138)
T ss_dssp EEECTTCCCSSEEEEEEEEECTTCCBEEEEEESSSSTTCCEEEEEEEETTT
T ss_pred EeecCCCCCCCCEEEEEEEECCCCCEEEEEeeeCCCCCCCEEEEEEEEcCC
Confidence 56789999999999998864333211 11246999999999975
No 68
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=22.54 E-value=66 Score=26.04 Aligned_cols=36 Identities=17% Similarity=0.363 Sum_probs=17.6
Q ss_pred cccceeee-ceeeeCCCCCCCCccCCCccc-cCCCccce
Q 013183 219 GCTKHVSF-DAFVPCDSCHGRGFPADAKTK-ICSTCRGI 255 (448)
Q Consensus 219 G~~~~i~~-~~~~~C~~C~G~G~~~~~~~~-~C~~C~G~ 255 (448)
|+...+.. +....|..|.-.-.. ..... .||.|++.
T Consensus 62 ~a~L~i~~~p~~~~C~~CG~~~e~-~~~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 62 DAILDIVDEKVELECKDCSHVFKP-NALDYGVCEKCHSK 99 (119)
T ss_dssp SCCEEEEEECCEEECSSSSCEECS-CCSTTCCCSSSSSC
T ss_pred CcEEEEEeccceEEcCCCCCEEeC-CCCCCCcCccccCC
Confidence 44444332 345678887543222 22334 56666555
No 69
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=22.43 E-value=46 Score=23.91 Aligned_cols=9 Identities=22% Similarity=0.789 Sum_probs=4.2
Q ss_pred cccCCCcCC
Q 013183 264 TSTCSTCKG 272 (448)
Q Consensus 264 ~~~C~~C~G 272 (448)
...|+.|++
T Consensus 18 k~~CP~CG~ 26 (60)
T 2apo_B 18 KEICPKCGE 26 (60)
T ss_dssp SSBCSSSCS
T ss_pred cccCcCCCC
Confidence 344555544
No 70
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1
Probab=22.38 E-value=9.7 Score=39.64 Aligned_cols=58 Identities=22% Similarity=0.489 Sum_probs=37.2
Q ss_pred eCCCCCCCCccCCC----ccccCCCccceeEEEe------CC-----ccccCCCcCCceEEeeecceeecCCc
Q 013183 231 PCDSCHGRGFPADA----KTKICSTCRGIGRVTI------PP-----FTSTCSTCKGLGRIIKDHCMTCKGSG 288 (448)
Q Consensus 231 ~C~~C~G~G~~~~~----~~~~C~~C~G~G~~~~------~~-----~~~~C~~C~G~G~~~~~~C~~C~g~G 288 (448)
.|..|+|.+..... ....|-.||+...... .+ -...|..||..-......|..|+...
T Consensus 14 ~C~~CH~~~~~~~~~~~~~~~~C~~CH~~~~~~~~~~~~~~~h~~~~~~~~C~~CH~~h~~~~~~c~~ch~~~ 86 (566)
T 1qo8_A 14 SCQSCHAKPIKVTDSETHENAQCKSCHGEYAELANDKLQFDPHNSHLGDINCTSCHKGHEEPKFYCNECHSFD 86 (566)
T ss_dssp CGGGTSCSSCCCCTTCHHHHHHHHHHHCCHHHHCCSSSSSCTTSSTTCSCCGGGTSCSSSCCCCGGGGTCCCC
T ss_pred ChhhhCCCccccccccCccCCHHhhhCcCHHHHhhccccCCcchhcCCCCCchhhCcCCcCcCchhhhhcCCC
Confidence 69999988654211 2347999997522110 01 14589999976655567899998653
No 71
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=22.12 E-value=1.2e+02 Score=22.45 Aligned_cols=42 Identities=24% Similarity=0.291 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 013183 100 KKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDR 146 (448)
Q Consensus 100 k~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~ 146 (448)
.+.+|...+.-||+... .+..+.|.+.|.-|++.++....+.
T Consensus 19 ~~~~r~~~~~~~p~~~~-----~eisk~lg~~Wk~ls~~eK~~y~~~ 60 (82)
T 1wz6_A 19 CKRHRSLVRQEHPRLDN-----RGATKILADWWAVLDPKEKQKYTDM 60 (82)
T ss_dssp HHHHHHHHHHHCSSSCT-----THHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCH-----HHHHHHHHHHHhhCCHHHHHHHHHH
Confidence 45667777778998754 3567789999999998776655554
No 72
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=21.73 E-value=1.1e+02 Score=22.68 Aligned_cols=42 Identities=19% Similarity=0.203 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 013183 100 KKAFHMLAKQYHPDANKNNPSAKRKFQEIRDAYETLRDSEKRAQYDR 146 (448)
Q Consensus 100 k~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~Yd~ 146 (448)
.+.+|...+.-||+... .+..+.|.+.|..|++.++....+.
T Consensus 18 ~~~~r~~~~~~~p~~~~-----~eisk~lg~~Wk~ls~~eK~~y~~~ 59 (83)
T 3f27_D 18 AKDERKRLAQQNPDLHN-----AELSKMLGKSWKALTLAEKRPFVEE 59 (83)
T ss_dssp HHHHHHHHHHHCSSSCH-----HHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 45677777888998752 5677889999999998777655554
No 73
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=21.20 E-value=55 Score=23.49 Aligned_cols=10 Identities=30% Similarity=0.740 Sum_probs=4.9
Q ss_pred cccCCCcCCc
Q 013183 264 TSTCSTCKGL 273 (448)
Q Consensus 264 ~~~C~~C~G~ 273 (448)
...|+.|++.
T Consensus 17 k~~CP~CG~~ 26 (60)
T 2aus_D 17 KETCPVCGEK 26 (60)
T ss_dssp SSBCTTTCSB
T ss_pred cccCcCCCCc
Confidence 3445555543
Done!