BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013184
(448 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 87/175 (49%), Gaps = 15/175 (8%)
Query: 267 ERFQLSKHFSFPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFAS 326
ER +L H S V + SPDG+ + D+ + + ++ G+ + L GH +
Sbjct: 8 ERNRLEAHSS---SVRGVAFSPDGQTIASASDDKT-VKLWNRNGQLLQTLTGHSSSVWGV 63
Query: 327 AWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADF 386
A+ PDG+ A+ + DKT ++W+ RN + + L G+ ++R + F+ DG +A A
Sbjct: 64 AFSPDGQTIASASDDKTVKLWN-RN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT 121
Query: 387 VHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALF-------IGVWDRTYGSLLQ 434
V +++ +NG + + G+ FSPD + + + +W+R G LLQ
Sbjct: 122 VKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQ 174
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 86/171 (50%), Gaps = 15/171 (8%)
Query: 271 LSKHFSFPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHP 330
L+ H S W V + SPDG+ + D+ + + ++ G+ + L GH + A+ P
Sbjct: 135 LTGHSSSVWGV---AFSPDGQTIASASDDKT-VKLWNRNGQLLQTLTGHSSSVWGVAFSP 190
Query: 331 DGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVY 390
DG+ A+ + DKT ++W+ RN + + L G+ ++R + F+ DG +A A V ++
Sbjct: 191 DGQTIASASDDKTVKLWN-RN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 248
Query: 391 DAKNGFEKEQEIDFFGEISGMTFSPDTEALF-------IGVWDRTYGSLLQ 434
+ +NG + ++G+ F PD + + + +W+R G LLQ
Sbjct: 249 N-RNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN-GQLLQ 297
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 80/161 (49%), Gaps = 12/161 (7%)
Query: 281 VNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQ 340
VN + PDG+ + D+ + + ++ G+ + L GH + A+ PDG+ A+ +
Sbjct: 265 VNGVAFRPDGQTIASASDDKT-VKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASD 323
Query: 341 DKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQ 400
DKT ++W+ RN + + L G+ ++ + F+ DG +A A V +++ +NG +
Sbjct: 324 DKTVKLWN-RN-GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQT 380
Query: 401 EIDFFGEISGMTFSPDTEALF-------IGVWDRTYGSLLQ 434
+ G+ FSPD + + + +W+R G LLQ
Sbjct: 381 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQ 420
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 80/161 (49%), Gaps = 12/161 (7%)
Query: 281 VNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQ 340
V + SPDG+ + D+ + + ++ G+ + L GH + A+ PD + A+ +
Sbjct: 388 VRGVAFSPDGQTIASASDDKT-VKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASD 446
Query: 341 DKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQ 400
DKT ++W+ RN + + L G+ ++R + F+ DG +A A V +++ +NG +
Sbjct: 447 DKTVKLWN-RN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQT 503
Query: 401 EIDFFGEISGMTFSPDTEALF-------IGVWDRTYGSLLQ 434
+ G+ FSPD + + + +W+R G LLQ
Sbjct: 504 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQ 543
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 78/158 (49%), Gaps = 7/158 (4%)
Query: 271 LSKHFSFPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHP 330
L+ H S W V + SPD + + D+ + + ++ G+ + L GH A+ P
Sbjct: 422 LTGHSSSVWGV---AFSPDDQTIASASDDKT-VKLWNRNGQLLQTLTGHSSSVRGVAFSP 477
Query: 331 DGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVY 390
DG+ A+ + DKT ++W+ RN + + L G+ ++R + F+ DG +A A V ++
Sbjct: 478 DGQTIASASDDKTVKLWN-RN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 535
Query: 391 DAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDRT 428
+ +NG + + G+ FSPD + + D+T
Sbjct: 536 N-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKT 572
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 281 VNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQ 340
V + SPDG+ + D+ + + ++ G+ + L GH + A+ PDG+ A+ +
Sbjct: 511 VRGVAFSPDGQTIASASDDKT-VKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASS 569
Query: 341 DKTCRVWD 348
DKT ++W+
Sbjct: 570 DKTVKLWN 577
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 80/172 (46%), Gaps = 10/172 (5%)
Query: 281 VNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQ 340
++ + S D LLV D+ + D +GK + L GH ++ F ++P + +G+
Sbjct: 85 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 144
Query: 341 DKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQ 400
D++ R+WDV+ K + L + + ++ F DG+ + + ++D +G +
Sbjct: 145 DESVRIWDVKT-GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 203
Query: 401 EIDFFG-EISGMTFSPDTEALF-------IGVWDRTYGSLLQ-YNRCRNYTY 443
ID +S + FSP+ + + + +WD + G L+ Y +N Y
Sbjct: 204 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 255
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/126 (19%), Positives = 50/126 (39%), Gaps = 8/126 (6%)
Query: 316 LCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDG 375
L GH + + P+G A+ + DK ++W + K + G+ I + ++SD
Sbjct: 36 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWSSDS 94
Query: 376 NFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIG-------VWDRT 428
N + A + ++D +G + + F+P + + G +WD
Sbjct: 95 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 154
Query: 429 YGSLLQ 434
G L+
Sbjct: 155 TGKCLK 160
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 290 GKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATG--NQDKTCRVW 347
GK +V ++ + + QT + + L GH D ++A HP I A+ DKT ++W
Sbjct: 266 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 325
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 80/172 (46%), Gaps = 10/172 (5%)
Query: 281 VNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQ 340
++ + S D LLV D+ + D +GK + L GH ++ F ++P + +G+
Sbjct: 90 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 149
Query: 341 DKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQ 400
D++ R+WDV+ K + L + + ++ F DG+ + + ++D +G +
Sbjct: 150 DESVRIWDVKT-GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 208
Query: 401 EIDFFG-EISGMTFSPDTEALF-------IGVWDRTYGSLLQ-YNRCRNYTY 443
ID +S + FSP+ + + + +WD + G L+ Y +N Y
Sbjct: 209 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 260
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/126 (19%), Positives = 50/126 (39%), Gaps = 8/126 (6%)
Query: 316 LCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDG 375
L GH + + P+G A+ + DK ++W + K + G+ I + ++SD
Sbjct: 41 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWSSDS 99
Query: 376 NFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIG-------VWDRT 428
N + A + ++D +G + + F+P + + G +WD
Sbjct: 100 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 159
Query: 429 YGSLLQ 434
G L+
Sbjct: 160 TGKCLK 165
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 308 QTGKAIMPLCGHLDFSFASAWHPDGRIFATG--NQDKTCRVW 347
QT + + L GH D ++A HP I A+ DKT ++W
Sbjct: 289 QTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 330
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 80/172 (46%), Gaps = 10/172 (5%)
Query: 281 VNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQ 340
++ + S D LLV D+ + D +GK + L GH ++ F ++P + +G+
Sbjct: 64 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 123
Query: 341 DKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQ 400
D++ R+WDV+ K + L + + ++ F DG+ + + ++D +G +
Sbjct: 124 DESVRIWDVKT-GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 182
Query: 401 EIDFFG-EISGMTFSPDTEALF-------IGVWDRTYGSLLQ-YNRCRNYTY 443
ID +S + FSP+ + + + +WD + G L+ Y +N Y
Sbjct: 183 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 234
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/126 (19%), Positives = 50/126 (39%), Gaps = 8/126 (6%)
Query: 316 LCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDG 375
L GH + + P+G A+ + DK ++W + K + G+ I + ++SD
Sbjct: 15 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWSSDS 73
Query: 376 NFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIG-------VWDRT 428
N + A + ++D +G + + F+P + + G +WD
Sbjct: 74 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 133
Query: 429 YGSLLQ 434
G L+
Sbjct: 134 TGKCLK 139
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 308 QTGKAIMPLCGHLDFSFASAWHPDGRIFATG--NQDKTCRVW 347
QT + + L GH D ++A HP I A+ DKT ++W
Sbjct: 263 QTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 304
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 80/172 (46%), Gaps = 10/172 (5%)
Query: 281 VNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQ 340
++ + S D LLV D+ + D +GK + L GH ++ F ++P + +G+
Sbjct: 73 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 132
Query: 341 DKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQ 400
D++ R+WDV+ K + L + + ++ F DG+ + + ++D +G +
Sbjct: 133 DESVRIWDVKT-GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 191
Query: 401 EIDFFG-EISGMTFSPDTEALF-------IGVWDRTYGSLLQ-YNRCRNYTY 443
ID +S + FSP+ + + + +WD + G L+ Y +N Y
Sbjct: 192 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 243
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/126 (19%), Positives = 50/126 (39%), Gaps = 8/126 (6%)
Query: 316 LCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDG 375
L GH + + P+G A+ + DK ++W + K + G+ I + ++SD
Sbjct: 24 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWSSDS 82
Query: 376 NFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIG-------VWDRT 428
N + A + ++D +G + + F+P + + G +WD
Sbjct: 83 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 142
Query: 429 YGSLLQ 434
G L+
Sbjct: 143 TGKCLK 148
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 308 QTGKAIMPLCGHLDFSFASAWHPDGRIFATG--NQDKTCRVW 347
QT + + L GH D ++A HP I A+ DKT ++W
Sbjct: 272 QTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 313
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 80/172 (46%), Gaps = 10/172 (5%)
Query: 281 VNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQ 340
++ + S D LLV D+ + D +GK + L GH ++ F ++P + +G+
Sbjct: 74 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 133
Query: 341 DKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQ 400
D++ R+WDV+ K + L + + ++ F DG+ + + ++D +G +
Sbjct: 134 DESVRIWDVKT-GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 192
Query: 401 EIDFFG-EISGMTFSPDTEALF-------IGVWDRTYGSLLQ-YNRCRNYTY 443
ID +S + FSP+ + + + +WD + G L+ Y +N Y
Sbjct: 193 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 244
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/126 (19%), Positives = 50/126 (39%), Gaps = 8/126 (6%)
Query: 316 LCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDG 375
L GH + + P+G A+ + DK ++W + K + G+ I + ++SD
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWSSDS 83
Query: 376 NFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIG-------VWDRT 428
N + A + ++D +G + + F+P + + G +WD
Sbjct: 84 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Query: 429 YGSLLQ 434
G L+
Sbjct: 144 TGKCLK 149
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 308 QTGKAIMPLCGHLDFSFASAWHPDGRIFATG--NQDKTCRVW 347
QT + + L GH D ++A HP I A+ DKT ++W
Sbjct: 273 QTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 80/172 (46%), Gaps = 10/172 (5%)
Query: 281 VNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQ 340
++ + S D LLV D+ + D +GK + L GH ++ F ++P + +G+
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 130
Query: 341 DKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQ 400
D++ R+WDV+ K + L + + ++ F DG+ + + ++D +G +
Sbjct: 131 DESVRIWDVKT-GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 189
Query: 401 EIDFFG-EISGMTFSPDTEALF-------IGVWDRTYGSLLQ-YNRCRNYTY 443
ID +S + FSP+ + + + +WD + G L+ Y +N Y
Sbjct: 190 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 241
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/126 (19%), Positives = 50/126 (39%), Gaps = 8/126 (6%)
Query: 316 LCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDG 375
L GH + + P+G A+ + DK ++W + K + G+ I + ++SD
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWSSDS 80
Query: 376 NFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIG-------VWDRT 428
N + A + ++D +G + + F+P + + G +WD
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 429 YGSLLQ 434
G L+
Sbjct: 141 TGKCLK 146
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 80/172 (46%), Gaps = 10/172 (5%)
Query: 281 VNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQ 340
++ + S D LLV D+ + D +GK + L GH ++ F ++P + +G+
Sbjct: 74 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 133
Query: 341 DKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQ 400
D++ R+WDV+ K + L + + ++ F DG+ + + ++D +G +
Sbjct: 134 DESVRIWDVKT-GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 192
Query: 401 EIDFFG-EISGMTFSPDTEALF-------IGVWDRTYGSLLQ-YNRCRNYTY 443
ID +S + FSP+ + + + +WD + G L+ Y +N Y
Sbjct: 193 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 244
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/126 (19%), Positives = 50/126 (39%), Gaps = 8/126 (6%)
Query: 316 LCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDG 375
L GH + + P+G A+ + DK ++W + K + G+ I + ++SD
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWSSDS 83
Query: 376 NFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIG-------VWDRT 428
N + A + ++D +G + + F+P + + G +WD
Sbjct: 84 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Query: 429 YGSLLQ 434
G L+
Sbjct: 144 TGKCLK 149
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 308 QTGKAIMPLCGHLDFSFASAWHPDGRIFATG--NQDKTCRVW 347
QT + + L GH D ++A HP I A+ DKT ++W
Sbjct: 273 QTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 80/172 (46%), Gaps = 10/172 (5%)
Query: 281 VNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQ 340
++ + S D LLV D+ + D +GK + L GH ++ F ++P + +G+
Sbjct: 92 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 151
Query: 341 DKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQ 400
D++ R+WDV+ K + L + + ++ F DG+ + + ++D +G +
Sbjct: 152 DESVRIWDVKT-GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 210
Query: 401 EIDFFG-EISGMTFSPDTEALF-------IGVWDRTYGSLLQ-YNRCRNYTY 443
ID +S + FSP+ + + + +WD + G L+ Y +N Y
Sbjct: 211 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 262
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/126 (19%), Positives = 50/126 (39%), Gaps = 8/126 (6%)
Query: 316 LCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDG 375
L GH + + P+G A+ + DK ++W + K + G+ I + ++SD
Sbjct: 43 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWSSDS 101
Query: 376 NFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIG-------VWDRT 428
N + A + ++D +G + + F+P + + G +WD
Sbjct: 102 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 161
Query: 429 YGSLLQ 434
G L+
Sbjct: 162 TGKCLK 167
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 308 QTGKAIMPLCGHLDFSFASAWHPDGRIFATG--NQDKTCRVW 347
QT + + L GH D ++A HP I A+ DKT ++W
Sbjct: 291 QTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 332
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 80/172 (46%), Gaps = 10/172 (5%)
Query: 281 VNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQ 340
++ + S D LLV D+ + D +GK + L GH ++ F ++P + +G+
Sbjct: 69 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 128
Query: 341 DKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQ 400
D++ R+WDV+ K + L + + ++ F DG+ + + ++D +G +
Sbjct: 129 DESVRIWDVKT-GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 187
Query: 401 EIDFFG-EISGMTFSPDTEALF-------IGVWDRTYGSLLQ-YNRCRNYTY 443
ID +S + FSP+ + + + +WD + G L+ Y +N Y
Sbjct: 188 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 239
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/126 (19%), Positives = 50/126 (39%), Gaps = 8/126 (6%)
Query: 316 LCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDG 375
L GH + + P+G A+ + DK ++W + K + G+ I + ++SD
Sbjct: 20 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWSSDS 78
Query: 376 NFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIG-------VWDRT 428
N + A + ++D +G + + F+P + + G +WD
Sbjct: 79 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 138
Query: 429 YGSLLQ 434
G L+
Sbjct: 139 TGKCLK 144
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 308 QTGKAIMPLCGHLDFSFASAWHPDGRIFATG--NQDKTCRVW 347
QT + + L GH D ++A HP I A+ DKT ++W
Sbjct: 268 QTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 309
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 80/172 (46%), Gaps = 10/172 (5%)
Query: 281 VNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQ 340
++ + S D LLV D+ + D +GK + L GH ++ F ++P + +G+
Sbjct: 68 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 127
Query: 341 DKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQ 400
D++ R+WDV+ K + L + + ++ F DG+ + + ++D +G +
Sbjct: 128 DESVRIWDVKT-GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 186
Query: 401 EIDFFG-EISGMTFSPDTEALF-------IGVWDRTYGSLLQ-YNRCRNYTY 443
ID +S + FSP+ + + + +WD + G L+ Y +N Y
Sbjct: 187 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 238
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/126 (19%), Positives = 50/126 (39%), Gaps = 8/126 (6%)
Query: 316 LCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDG 375
L GH + + P+G A+ + DK ++W + K + G+ I + ++SD
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWSSDS 77
Query: 376 NFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIG-------VWDRT 428
N + A + ++D +G + + F+P + + G +WD
Sbjct: 78 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 137
Query: 429 YGSLLQ 434
G L+
Sbjct: 138 TGKCLK 143
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 290 GKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATG--NQDKTCRVW 347
GK +V ++ + + QT + + L GH D ++A HP I A+ DKT ++W
Sbjct: 249 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 80/172 (46%), Gaps = 10/172 (5%)
Query: 281 VNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQ 340
++ + S D LLV D+ + D +GK + L GH ++ F ++P + +G+
Sbjct: 74 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 133
Query: 341 DKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQ 400
D++ R+WDV+ K + L + + ++ F DG+ + + ++D +G +
Sbjct: 134 DESVRIWDVKT-GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 192
Query: 401 EIDFFG-EISGMTFSPDTEALF-------IGVWDRTYGSLLQ-YNRCRNYTY 443
ID +S + FSP+ + + + +WD + G L+ Y +N Y
Sbjct: 193 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 244
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/126 (19%), Positives = 50/126 (39%), Gaps = 8/126 (6%)
Query: 316 LCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDG 375
L GH + + P+G A+ + DK ++W + K + G+ I + ++SD
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWSSDS 83
Query: 376 NFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIG-------VWDRT 428
N + A + ++D +G + + F+P + + G +WD
Sbjct: 84 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Query: 429 YGSLLQ 434
G L+
Sbjct: 144 TGKCLK 149
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 308 QTGKAIMPLCGHLDFSFASAWHPDGRIFATG--NQDKTCRVW 347
QT + + L GH D ++A HP I A+ DKT ++W
Sbjct: 273 QTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 80/172 (46%), Gaps = 10/172 (5%)
Query: 281 VNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQ 340
++ + S D LLV D+ + D +GK + L GH ++ F ++P + +G+
Sbjct: 68 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 127
Query: 341 DKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQ 400
D++ R+WDV+ K + L + + ++ F DG+ + + ++D +G +
Sbjct: 128 DESVRIWDVKT-GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 186
Query: 401 EIDFFG-EISGMTFSPDTEALF-------IGVWDRTYGSLLQ-YNRCRNYTY 443
ID +S + FSP+ + + + +WD + G L+ Y +N Y
Sbjct: 187 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 238
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/126 (19%), Positives = 50/126 (39%), Gaps = 8/126 (6%)
Query: 316 LCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDG 375
L GH + + P+G A+ + DK ++W + K + G+ I + ++SD
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWSSDS 77
Query: 376 NFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIG-------VWDRT 428
N + A + ++D +G + + F+P + + G +WD
Sbjct: 78 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 137
Query: 429 YGSLLQ 434
G L+
Sbjct: 138 TGKCLK 143
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 308 QTGKAIMPLCGHLDFSFASAWHPDGRIFATG--NQDKTCRVW 347
QT + + L GH D ++A HP I A+ DKT ++W
Sbjct: 267 QTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 80/172 (46%), Gaps = 10/172 (5%)
Query: 281 VNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQ 340
++ + S D LLV D+ + D +GK + L GH ++ F ++P + +G+
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 130
Query: 341 DKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQ 400
D++ R+WDV+ K + L + + ++ F DG+ + + ++D +G +
Sbjct: 131 DESVRIWDVKT-GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 189
Query: 401 EIDFFG-EISGMTFSPDTEALF-------IGVWDRTYGSLLQ-YNRCRNYTY 443
ID +S + FSP+ + + + +WD + G L+ Y +N Y
Sbjct: 190 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 241
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/126 (19%), Positives = 50/126 (39%), Gaps = 8/126 (6%)
Query: 316 LCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDG 375
L GH + + P+G A+ + DK ++W + K + G+ I + ++SD
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWSSDS 80
Query: 376 NFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIG-------VWDRT 428
N + A + ++D +G + + F+P + + G +WD
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 429 YGSLLQ 434
G L+
Sbjct: 141 TGKCLK 146
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 80/172 (46%), Gaps = 10/172 (5%)
Query: 281 VNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQ 340
++ + S D LLV D+ + D +GK + L GH ++ F ++P + +G+
Sbjct: 67 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 126
Query: 341 DKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQ 400
D++ R+WDV+ K + L + + ++ F DG+ + + ++D +G +
Sbjct: 127 DESVRIWDVKT-GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 185
Query: 401 EIDFFG-EISGMTFSPDTEALF-------IGVWDRTYGSLLQ-YNRCRNYTY 443
ID +S + FSP+ + + + +WD + G L+ Y +N Y
Sbjct: 186 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 237
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/126 (19%), Positives = 50/126 (39%), Gaps = 8/126 (6%)
Query: 316 LCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDG 375
L GH + + P+G A+ + DK ++W + K + G+ I + ++SD
Sbjct: 18 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWSSDS 76
Query: 376 NFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIG-------VWDRT 428
N + A + ++D +G + + F+P + + G +WD
Sbjct: 77 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 136
Query: 429 YGSLLQ 434
G L+
Sbjct: 137 TGKCLK 142
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 308 QTGKAIMPLCGHLDFSFASAWHPDGRIFATG--NQDKTCRVW 347
QT + + L GH D ++A HP I A+ DKT ++W
Sbjct: 266 QTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 307
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 80/172 (46%), Gaps = 10/172 (5%)
Query: 281 VNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQ 340
++ + S D LLV D+ + D +GK + L GH ++ F ++P + +G+
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 130
Query: 341 DKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQ 400
D++ R+WDV+ K + L + + ++ F DG+ + + ++D +G +
Sbjct: 131 DESVRIWDVKT-GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 189
Query: 401 EIDFFG-EISGMTFSPDTEALF-------IGVWDRTYGSLLQ-YNRCRNYTY 443
ID +S + FSP+ + + + +WD + G L+ Y +N Y
Sbjct: 190 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 241
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/126 (19%), Positives = 49/126 (38%), Gaps = 8/126 (6%)
Query: 316 LCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDG 375
L GH + + P+G A + DK ++W + K + G+ I + ++SD
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWSSDS 80
Query: 376 NFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIG-------VWDRT 428
N + A + ++D +G + + F+P + + G +WD
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 429 YGSLLQ 434
G L+
Sbjct: 141 TGKCLK 146
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 290 GKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATG--NQDKTCRVW 347
GK +V ++ + + QT + + L GH D ++A HP I A+ DKT ++W
Sbjct: 252 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 88/224 (39%), Gaps = 14/224 (6%)
Query: 216 KYLDQPGVSFCSRTTYD----ENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQL 271
K LD V C + + D ++Y G + +A +D + D E
Sbjct: 59 KSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSL--VARLSDDSAANKDPENLNT 116
Query: 272 SKHFSFPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPD 331
S S + SPDGK L ++ + D + K +M L GH ++ + P
Sbjct: 117 SSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPS 176
Query: 332 GRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYD 391
G +G+ D+T R+WD+R S+ L G DG ++A V V+D
Sbjct: 177 GDKLVSGSGDRTVRIWDLRTGQCSLT-LSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWD 235
Query: 392 AKNGF-------EKEQEIDFFGEISGMTFSPDTEALFIGVWDRT 428
++ GF E E + + F+ D +++ G DR+
Sbjct: 236 SETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS 279
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 9/114 (7%)
Query: 246 PSGGIHFMASNNDCGVRDFDMERFQLSKHFSFPWPVNHTSLSPDGKLLVIVGDNPEGILV 305
PSG ++ + D VR +D+ Q S S V ++SP + G + V
Sbjct: 175 PSGD-KLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRV 233
Query: 306 -DSQTGKAIMPL-------CGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRN 351
DS+TG + L GH D ++ + DG+ +G+ D++ ++W+++N
Sbjct: 234 WDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN 287
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Query: 294 VIVGDNPEGILV-DSQTGKAIMPLCGH------LDFSFASAWHPDGRIFATGNQDKTCRV 346
++ G G+L D ++G ++ L GH + + S+ P+ +FATG+ D R+
Sbjct: 325 ILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARI 384
Query: 347 WDVRNLS 353
W + ++
Sbjct: 385 WKYKKIA 391
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 79/172 (45%), Gaps = 10/172 (5%)
Query: 281 VNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQ 340
++ + S D LLV D+ + D +GK + L GH ++ F ++P + +G+
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 130
Query: 341 DKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQ 400
D++ R+WDV+ + L + + ++ F DG+ + + ++D +G +
Sbjct: 131 DESVRIWDVKT-GMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 189
Query: 401 EIDFFG-EISGMTFSPDTEALF-------IGVWDRTYGSLLQ-YNRCRNYTY 443
ID +S + FSP+ + + + +WD + G L+ Y +N Y
Sbjct: 190 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 241
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/129 (19%), Positives = 51/129 (39%), Gaps = 8/129 (6%)
Query: 313 IMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFT 372
+ L GH + + P+G A+ + DK ++W + K + G+ I + ++
Sbjct: 19 MFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWS 77
Query: 373 SDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIG-------VW 425
SD N + A + ++D +G + + F+P + + G +W
Sbjct: 78 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Query: 426 DRTYGSLLQ 434
D G L+
Sbjct: 138 DVKTGMCLK 146
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 290 GKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATG--NQDKTCRVW 347
GK +V ++ + + QT + + L GH D ++A HP I A+ DKT ++W
Sbjct: 252 GKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 79/172 (45%), Gaps = 10/172 (5%)
Query: 281 VNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQ 340
++ + S D LLV D+ + D +GK + L GH ++ F ++P + +G+
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 130
Query: 341 DKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQ 400
D++ R+WDV+ + L + + ++ F DG+ + + ++D +G +
Sbjct: 131 DESVRIWDVKT-GMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 189
Query: 401 EIDFFG-EISGMTFSPDTEALF-------IGVWDRTYGSLLQ-YNRCRNYTY 443
ID +S + FSP+ + + + +WD + G L+ Y +N Y
Sbjct: 190 LIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKY 241
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/129 (19%), Positives = 51/129 (39%), Gaps = 8/129 (6%)
Query: 313 IMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFT 372
+ L GH + + P+G A+ + DK ++W + K + G+ I + ++
Sbjct: 19 MFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWS 77
Query: 373 SDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIG-------VW 425
SD N + A + ++D +G + + F+P + + G +W
Sbjct: 78 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Query: 426 DRTYGSLLQ 434
D G L+
Sbjct: 138 DVKTGMCLK 146
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 290 GKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATG--NQDKTCRVW 347
GK +V ++ + + QT + + L GH D ++A HP I A+ DKT ++W
Sbjct: 252 GKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 65/148 (43%), Gaps = 3/148 (2%)
Query: 281 VNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQ 340
V SL+PD +L V + L D + G GH A + P+G FATG+
Sbjct: 187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD 246
Query: 341 DKTCRVWDVRNLSKSVAVLKGN-LGAIRSIRFTSDGNFMAMAEPADF-VHVYDAKNGFEK 398
D TCR++D+R + + N + I S+ F+ G + +A DF +V+DA
Sbjct: 247 DATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL-LAGYDDFNCNVWDALKADRA 305
Query: 399 EQEIDFFGEISGMTFSPDTEALFIGVWD 426
+S + + D A+ G WD
Sbjct: 306 GVLAGHDNRVSCLGVTDDGMAVATGSWD 333
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 66/162 (40%), Gaps = 11/162 (6%)
Query: 268 RFQLSKHFSFPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASA 327
R L+K ++ W D +LL+ + + I+ DS T + + + A
Sbjct: 52 RGHLAKIYAMHW-------GTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA 104
Query: 328 WHPDGRIFATGNQDKTCRVWDVRNLSKSVAV---LKGNLGAIRSIRFTSDGNFMAMAEPA 384
+ P G A G D C +++++ +V V L G+ G + RF D N + +
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD-NQIVTSSGD 163
Query: 385 DFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWD 426
++D + G + G++ ++ +PDT G D
Sbjct: 164 TTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD 205
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 50/127 (39%), Gaps = 6/127 (4%)
Query: 225 FCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDM---ERFQLSKHFSFPWPV 281
C +T + NA+ + P+G F ++D R FD+ + H + +
Sbjct: 217 MCRQTFTGHESDINAICFF--PNGNA-FATGSDDATCRLFDLRADQELMTYSHDNIICGI 273
Query: 282 NHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQD 341
S S G+LL+ D+ + D+ L GH + DG ATG+ D
Sbjct: 274 TSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWD 333
Query: 342 KTCRVWD 348
++W+
Sbjct: 334 SFLKIWN 340
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 64/144 (44%), Gaps = 3/144 (2%)
Query: 285 SLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTC 344
SL+PD +L V + L D + G GH A + P+G FATG+ D TC
Sbjct: 191 SLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATC 250
Query: 345 RVWDVRNLSKSVAVLKGN-LGAIRSIRFTSDGNFMAMAEPADF-VHVYDAKNGFEKEQEI 402
R++D+R + + N + I S+ F+ G + +A DF +V+DA
Sbjct: 251 RLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL-LAGYDDFNCNVWDALKADRAGVLA 309
Query: 403 DFFGEISGMTFSPDTEALFIGVWD 426
+S + + D A+ G WD
Sbjct: 310 GHDNRVSCLGVTDDGMAVATGSWD 333
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 66/162 (40%), Gaps = 11/162 (6%)
Query: 268 RFQLSKHFSFPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASA 327
R L+K ++ W D +LLV + + I+ DS T + + + A
Sbjct: 52 RGHLAKIYAMHW-------GTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA 104
Query: 328 WHPDGRIFATGNQDKTCRVWDVRNLSKSVAV---LKGNLGAIRSIRFTSDGNFMAMAEPA 384
+ P G A G D C +++++ +V V L G+ G + RF D N + +
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD-NQIVTSSGD 163
Query: 385 DFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWD 426
++D + G + G++ ++ +PDT G D
Sbjct: 164 TTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD 205
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 50/127 (39%), Gaps = 6/127 (4%)
Query: 225 FCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDM---ERFQLSKHFSFPWPV 281
C +T + NA+ + P+G F ++D R FD+ + H + +
Sbjct: 217 MCRQTFTGHESDINAICFF--PNGNA-FATGSDDATCRLFDLRADQELMTYSHDNIICGI 273
Query: 282 NHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQD 341
S S G+LL+ D+ + D+ L GH + DG ATG+ D
Sbjct: 274 TSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWD 333
Query: 342 KTCRVWD 348
++W+
Sbjct: 334 SFLKIWN 340
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 65/148 (43%), Gaps = 3/148 (2%)
Query: 281 VNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQ 340
V SL+PD +L V + L D + G GH A + P+G FATG+
Sbjct: 187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD 246
Query: 341 DKTCRVWDVRNLSKSVAVLKGN-LGAIRSIRFTSDGNFMAMAEPADF-VHVYDAKNGFEK 398
D TCR++D+R + + N + I S+ F+ G + +A DF +V+DA
Sbjct: 247 DATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL-LAGYDDFNCNVWDALKADRA 305
Query: 399 EQEIDFFGEISGMTFSPDTEALFIGVWD 426
+S + + D A+ G WD
Sbjct: 306 GVLAGHDNRVSCLGVTDDGMAVATGSWD 333
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 66/162 (40%), Gaps = 11/162 (6%)
Query: 268 RFQLSKHFSFPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASA 327
R L+K ++ W D +LLV + + I+ DS T + + + A
Sbjct: 52 RGHLAKIYAMHW-------GTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA 104
Query: 328 WHPDGRIFATGNQDKTCRVWDVRNLSKSVAV---LKGNLGAIRSIRFTSDGNFMAMAEPA 384
+ P G A G D C +++++ +V V L G+ G + RF D N + +
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD-NQIVTSSGD 163
Query: 385 DFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWD 426
++D + G + G++ ++ +PDT G D
Sbjct: 164 TTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD 205
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 50/127 (39%), Gaps = 6/127 (4%)
Query: 225 FCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDM---ERFQLSKHFSFPWPV 281
C +T + NA+ + P+G F ++D R FD+ + H + +
Sbjct: 217 MCRQTFTGHESDINAICFF--PNGNA-FATGSDDATCRLFDLRADQELMTYSHDNIICGI 273
Query: 282 NHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQD 341
S S G+LL+ D+ + D+ L GH + DG ATG+ D
Sbjct: 274 TSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWD 333
Query: 342 KTCRVWD 348
++W+
Sbjct: 334 SFLKIWN 340
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 65/148 (43%), Gaps = 3/148 (2%)
Query: 281 VNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQ 340
V SL+PD +L V + L D + G GH A + P+G FATG+
Sbjct: 187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD 246
Query: 341 DKTCRVWDVRNLSKSVAVLKGN-LGAIRSIRFTSDGNFMAMAEPADF-VHVYDAKNGFEK 398
D TCR++D+R + + N + I S+ F+ G + +A DF +V+DA
Sbjct: 247 DATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL-LAGYDDFNCNVWDALKADRA 305
Query: 399 EQEIDFFGEISGMTFSPDTEALFIGVWD 426
+S + + D A+ G WD
Sbjct: 306 GVLAGHDNRVSCLGVTDDGMAVATGSWD 333
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 66/162 (40%), Gaps = 11/162 (6%)
Query: 268 RFQLSKHFSFPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASA 327
R L+K ++ W D +LL+ + + I+ DS T + + + A
Sbjct: 52 RGHLAKIYAMHW-------GTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA 104
Query: 328 WHPDGRIFATGNQDKTCRVWDVRNLSKSVAV---LKGNLGAIRSIRFTSDGNFMAMAEPA 384
+ P G A G D C +++++ +V V L G+ G + RF D N + +
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD-NQIVTSSGD 163
Query: 385 DFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWD 426
++D + G + G++ ++ +PDT G D
Sbjct: 164 TTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD 205
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 50/127 (39%), Gaps = 6/127 (4%)
Query: 225 FCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDM---ERFQLSKHFSFPWPV 281
C +T + NA+ + P+G F ++D R FD+ + H + +
Sbjct: 217 MCRQTFTGHESDINAICFF--PNGNA-FATGSDDATCRLFDLRADQELMTYSHDNIICGI 273
Query: 282 NHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQD 341
S S G+LL+ D+ + D+ L GH + DG ATG+ D
Sbjct: 274 TSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWD 333
Query: 342 KTCRVWD 348
++W+
Sbjct: 334 SFLKIWN 340
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 65/148 (43%), Gaps = 3/148 (2%)
Query: 281 VNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQ 340
V SL+PD +L V + L D + G GH A + P+G FATG+
Sbjct: 198 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD 257
Query: 341 DKTCRVWDVRNLSKSVAVLKGN-LGAIRSIRFTSDGNFMAMAEPADF-VHVYDAKNGFEK 398
D TCR++D+R + + N + I S+ F+ G + +A DF +V+DA
Sbjct: 258 DATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL-LAGYDDFNCNVWDALKADRA 316
Query: 399 EQEIDFFGEISGMTFSPDTEALFIGVWD 426
+S + + D A+ G WD
Sbjct: 317 GVLAGHDNRVSCLGVTDDGMAVATGSWD 344
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 66/162 (40%), Gaps = 11/162 (6%)
Query: 268 RFQLSKHFSFPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASA 327
R L+K ++ W D +LLV + + I+ DS T + + + A
Sbjct: 63 RGHLAKIYAMHW-------GTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA 115
Query: 328 WHPDGRIFATGNQDKTCRVWDVRNLSKSVAV---LKGNLGAIRSIRFTSDGNFMAMAEPA 384
+ P G A G D C +++++ +V V L G+ G + RF D N + +
Sbjct: 116 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD-NQIVTSSGD 174
Query: 385 DFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWD 426
++D + G + G++ ++ +PDT G D
Sbjct: 175 TTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD 216
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 50/127 (39%), Gaps = 6/127 (4%)
Query: 225 FCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDM---ERFQLSKHFSFPWPV 281
C +T + NA+ + P+G F ++D R FD+ + H + +
Sbjct: 228 MCRQTFTGHESDINAICFF--PNGNA-FATGSDDATCRLFDLRADQELMTYSHDNIICGI 284
Query: 282 NHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQD 341
S S G+LL+ D+ + D+ L GH + DG ATG+ D
Sbjct: 285 TSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWD 344
Query: 342 KTCRVWD 348
++W+
Sbjct: 345 SFLKIWN 351
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 83/197 (42%), Gaps = 6/197 (3%)
Query: 237 TNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHF-SFPWPVNHTSLSPD--GKLL 293
TN + + + + + ++ D +D+E QL + F V L+P G
Sbjct: 154 TNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTF 213
Query: 294 VIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLS 353
V G + + ++ D ++G+ + H + ++P G FA+G+ D TCR++D+R
Sbjct: 214 VSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLR-AD 272
Query: 354 KSVAVLKGN--LGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGM 411
+ VA+ + S+ F+ G + ++V+D G +S +
Sbjct: 273 REVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTL 332
Query: 412 TFSPDTEALFIGVWDRT 428
SPD A G WD T
Sbjct: 333 RVSPDGTAFCSGSWDHT 349
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 48/114 (42%), Gaps = 8/114 (7%)
Query: 238 NAVEIYNSPSGGIHFMASNNDCGVRDFDME---RFQLSKHFSFPWPVNHTSLSPDGKLLV 294
N+V Y PSG F + ++D R +D+ + S + + S G+LL
Sbjct: 244 NSVRYY--PSGDA-FASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLL- 299
Query: 295 IVGDNPEGILV-DSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVW 347
G N I V D G + L GH + PDG F +G+ D T RVW
Sbjct: 300 FAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 70/163 (42%), Gaps = 19/163 (11%)
Query: 252 FMASNNDCGVRDFDMERFQLSKHFSFPWPVNHTSLSP--DGKLLVIVGD-NPEGILVDSQ 308
F +S+ D ++ +D Q + F+F V +SP LV VG P+ L D +
Sbjct: 115 FTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLK 174
Query: 309 TGKAIMPLCGHLDFSFASAWHPD-GRIFATGNQDKTCRVWDVRNLS------------KS 355
+G L GH A +W P I AT + D ++WDVR S KS
Sbjct: 175 SGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKS 234
Query: 356 VAVLKGNL---GAIRSIRFTSDGNFMAMAEPADFVHVYDAKNG 395
AV N G + + FTSDG + + + ++++ NG
Sbjct: 235 QAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNG 277
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 75/172 (43%), Gaps = 18/172 (10%)
Query: 254 ASNNDCGVRDFDMERFQLSKHFSFPWPVNHTSL--SPDGKLLVIVGDNPEGILVDSQTGK 311
+S+ D +R +D+E + K PV+ +L SPD + L + + ++GK
Sbjct: 97 SSSLDAHIRLWDLENGKQIKSIDAG-PVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGK 155
Query: 312 AIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRF 371
L F + A+ PDG+ A+G D ++D+ K + L+G+ IRS+ F
Sbjct: 156 KEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIAT-GKLLHTLEGHAMPIRSLTF 214
Query: 372 TSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISG-------MTFSPD 416
+ D + A ++ +YD Q + G +SG + F PD
Sbjct: 215 SPDSQLLVTASDDGYIKIYDV-------QHANLAGTLSGHASWVLNVAFCPD 259
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 1/112 (0%)
Query: 280 PVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGN 339
P+ + SPD +LLV D+ + D Q L GH + A+ PD F + +
Sbjct: 208 PIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSS 267
Query: 340 QDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYD 391
DK+ +VWDV + V + + +++ +G+ + +H+YD
Sbjct: 268 SDKSVKVWDVGTRT-CVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 63/145 (43%), Gaps = 9/145 (6%)
Query: 281 VNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQ 340
V H S DG+ + G + + ++TG+ ++ + H D A+ D AT +
Sbjct: 618 VYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSA 677
Query: 341 DKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPAD--FVHVYDAKNGFEK 398
DK ++WD K V + + FT+ N + +A ++ F+ ++D +K
Sbjct: 678 DKKVKIWDSAT-GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN---QK 733
Query: 399 EQEIDFFGEISGMT---FSPDTEAL 420
E FG + + FSPD E L
Sbjct: 734 ECRNTMFGHTNSVNHCRFSPDDELL 758
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 12/109 (11%)
Query: 318 GHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSK-SVAVLKGNLGAIRSIRFTSDGN 376
GHL + + PDG F T + D+T RVW+ + + K S VLK + + F +
Sbjct: 880 GHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVV----FQENET 935
Query: 377 FMAMAEPADFVHVYDAKNGFEKEQEIDFFGE--ISGMTFSPDTEALFIG 423
+ + + + K G +ID+ E +S SP E + G
Sbjct: 936 MVLAVDNIRGLQLIAGKTG-----QIDYLPEAQVSCCCLSPHLEYVAFG 979
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 10/121 (8%)
Query: 309 TGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRS 368
TG+ H + A D F++ + DKT ++W LS + LKG+ G +R
Sbjct: 1074 TGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLS-PLHELKGHNGCVRC 1132
Query: 369 IRFTSDGNFMAMAEPADFVHVYDAKNG---------FEKEQEIDFFGEISGMTFSPDTEA 419
F+ DG +A + + +++ +G +E G ++ + FSPD++
Sbjct: 1133 SAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKT 1192
Query: 420 L 420
L
Sbjct: 1193 L 1193
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/134 (20%), Positives = 57/134 (42%), Gaps = 16/134 (11%)
Query: 319 HLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFM 378
H D + + + DG+ A+ DKT +V+ K + + K + + F+SD +++
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDI-KAHEDEVLCCAFSSDDSYI 672
Query: 379 AMAEPADFVHVYDAKNGF------EKEQEID---FFGEISGMTFSPDTEALFIGVWDRTY 429
A V ++D+ G E ++++ F + + + + + F+ +WD
Sbjct: 673 ATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWD--- 729
Query: 430 GSLLQYNRCRNYTY 443
L CRN +
Sbjct: 730 ---LNQKECRNTMF 740
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 12/110 (10%)
Query: 318 GHLDFSFASAWHPDGRIFATGNQDKTCRVWDVR--NLSKSVAVLKGNLGA---------- 365
GH + + PD + A+ + D T R+WDVR N KS+ V + L +
Sbjct: 741 GHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVI 800
Query: 366 IRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSP 415
++ +++DG+ + +A + +G E I FSP
Sbjct: 801 VKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSP 850
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 59/151 (39%), Gaps = 25/151 (16%)
Query: 281 VNHTSLSPDGKLLVIVGDNP--------EGILVDSQTGK-AIMPLCGHLDFSFASAWHPD 331
V S S DG +++ N G+L + TG + + C DFS P
Sbjct: 801 VKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYC---DFS------PY 851
Query: 332 GRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYD 391
+ +W++ + K VA +G+L + + F+ DG+ A + V++
Sbjct: 852 DHLAVIALSQYCVELWNIDSRLK-VADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWE 910
Query: 392 AK-----NGFEKEQEID-FFGEISGMTFSPD 416
K + +QEID F E M + D
Sbjct: 911 TKKVCKNSAIVLKQEIDVVFQENETMVLAVD 941
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 63/145 (43%), Gaps = 9/145 (6%)
Query: 281 VNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQ 340
V H S DG+ + G + + ++TG+ ++ + H D A+ D AT +
Sbjct: 625 VYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSA 684
Query: 341 DKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPAD--FVHVYDAKNGFEK 398
DK ++WD K V + + FT+ N + +A ++ F+ ++D +K
Sbjct: 685 DKKVKIWDSAT-GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN---QK 740
Query: 399 EQEIDFFGEISGMT---FSPDTEAL 420
E FG + + FSPD E L
Sbjct: 741 ECRNTMFGHTNSVNHCRFSPDDELL 765
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 12/109 (11%)
Query: 318 GHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSK-SVAVLKGNLGAIRSIRFTSDGN 376
GHL + + PDG F T + D+T RVW+ + + K S VLK + + F +
Sbjct: 887 GHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVV----FQENET 942
Query: 377 FMAMAEPADFVHVYDAKNGFEKEQEIDFFGE--ISGMTFSPDTEALFIG 423
+ + + + K G +ID+ E +S SP E + G
Sbjct: 943 MVLAVDNIRGLQLIAGKTG-----QIDYLPEAQVSCCCLSPHLEYVAFG 986
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 10/121 (8%)
Query: 309 TGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRS 368
TG+ H + A D F++ + DKT ++W LS + LKG+ G +R
Sbjct: 1081 TGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLS-PLHELKGHNGCVRC 1139
Query: 369 IRFTSDGNFMAMAEPADFVHVYDAKNG---------FEKEQEIDFFGEISGMTFSPDTEA 419
F+ DG +A + + +++ +G +E G ++ + FSPD++
Sbjct: 1140 SAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKT 1199
Query: 420 L 420
L
Sbjct: 1200 L 1200
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/134 (20%), Positives = 57/134 (42%), Gaps = 16/134 (11%)
Query: 319 HLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFM 378
H D + + + DG+ A+ DKT +V+ K + + K + + F+SD +++
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDI-KAHEDEVLCCAFSSDDSYI 679
Query: 379 AMAEPADFVHVYDAKNGF------EKEQEID---FFGEISGMTFSPDTEALFIGVWDRTY 429
A V ++D+ G E ++++ F + + + + + F+ +WD
Sbjct: 680 ATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWD--- 736
Query: 430 GSLLQYNRCRNYTY 443
L CRN +
Sbjct: 737 ---LNQKECRNTMF 747
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 12/110 (10%)
Query: 318 GHLDFSFASAWHPDGRIFATGNQDKTCRVWDVR--NLSKSVAVLKGNLGA---------- 365
GH + + PD + A+ + D T R+WDVR N KS+ V + L +
Sbjct: 748 GHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVI 807
Query: 366 IRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSP 415
++ +++DG+ + +A + +G E I FSP
Sbjct: 808 VKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSP 857
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 59/151 (39%), Gaps = 25/151 (16%)
Query: 281 VNHTSLSPDGKLLVIVGDNP--------EGILVDSQTGK-AIMPLCGHLDFSFASAWHPD 331
V S S DG +++ N G+L + TG + + C DFS P
Sbjct: 808 VKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYC---DFS------PY 858
Query: 332 GRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYD 391
+ +W++ + K VA +G+L + + F+ DG+ A + V++
Sbjct: 859 DHLAVIALSQYCVELWNIDSRLK-VADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWE 917
Query: 392 AK-----NGFEKEQEID-FFGEISGMTFSPD 416
K + +QEID F E M + D
Sbjct: 918 TKKVCKNSAIVLKQEIDVVFQENETMVLAVD 948
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 67/167 (40%), Gaps = 21/167 (12%)
Query: 288 PDGKLLVIVGDNPEG-ILVDSQTGKAI------MPLCGHLDFSFASAWHPDGRIFATGNQ 340
PD + +I G + +L D TG+ I P D S + +F +G+
Sbjct: 167 PDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSC 226
Query: 341 DKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGF---- 396
D T R+WD+R S++V G+ G I S++F DG ++D + G
Sbjct: 227 DTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQV 286
Query: 397 ---EKEQEIDFFGEISGMTFSPDTEALFIG-------VWDRTYGSLL 433
E ++ + ++ + FS LF G VWD ++
Sbjct: 287 YNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMV 333
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 68/160 (42%), Gaps = 16/160 (10%)
Query: 281 VNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQ 340
V H S DG+ + G + + ++TG+ ++ + H D A+ D R AT +
Sbjct: 624 VYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSV 683
Query: 341 DKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPAD--FVHVYDAKNGFEK 398
DK ++W+ + V + + FT+ + + +A + F+ ++D +K
Sbjct: 684 DKKVKIWNSMT-GELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLN---QK 739
Query: 399 EQEIDFFGEISGMT---FSPDTEALF-------IGVWDRT 428
E FG + + FSPD + L + +WD T
Sbjct: 740 ECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDAT 779
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 61/146 (41%), Gaps = 12/146 (8%)
Query: 281 VNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQ 340
+ + SP L V+ L ++ + + GHL + + PDG F T +
Sbjct: 849 IQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSD 908
Query: 341 DKTCRVWDVRNLSKSVAV-LKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKE 399
D+T R+W+ + + K+ AV LK + + + M +A D + NG +
Sbjct: 909 DQTIRLWETKKVCKNSAVMLKQEVDVV-----FQENEVMVLA--VDHIRRLQLING--RT 959
Query: 400 QEIDFFGE--ISGMTFSPDTEALFIG 423
+ID+ E +S SP + + G
Sbjct: 960 GQIDYLTEAQVSCCCLSPHLQYIAFG 985
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 67/305 (21%), Positives = 109/305 (35%), Gaps = 90/305 (29%)
Query: 189 FTQTQVSTLAVRD--NLLIAGGFQGELICKYLDQPGVSFCSRTTY-------DENAITNA 239
F + +V LAV L + G G++ YL + VS C + + DEN
Sbjct: 936 FQENEVMVLAVDHIRRLQLINGRTGQI--DYLTEAQVSCCCLSPHLQYIAFGDENGAIEI 993
Query: 240 VEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFSFPWPVNHTSLSPDGKLLVIVGDN 299
+E+ N+ R F RFQ K V H + D K L+ D+
Sbjct: 994 LELVNN----------------RIFQ-SRFQHKK------TVWHIQFTADEKTLISSSDD 1030
Query: 300 PEGILVDSQTGKAIMPLCGH---------LDFSFASAWHPDGRI---------------- 334
E + + Q K I L GH L S +W DG +
Sbjct: 1031 AEIQVWNWQLDKCIF-LRGHQETVKDFRLLKNSRLLSWSFDGTVKVWNIITGNKEKDFVC 1089
Query: 335 ----------------FATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFM 378
F++ + DKT ++W +L + L+G+ G +R F+ D +
Sbjct: 1090 HQGTVLSCDISHDATKFSSTSADKTAKIWSF-DLLLPLHELRGHNGCVRCSAFSVDSTLL 1148
Query: 379 AMAEPADFVHVYDAKNG--------FEKEQEIDFFGEISGMTFSPDTEAL-----FIGVW 425
A + + +++ NG +E G ++ + FSPD + L +I W
Sbjct: 1149 ATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISAGGYIKWW 1208
Query: 426 DRTYG 430
+ G
Sbjct: 1209 NVVTG 1213
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 28/136 (20%), Positives = 51/136 (37%), Gaps = 20/136 (14%)
Query: 319 HLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFM 378
H D + + + DG+ A+ DKT +V+ K + + K + + F++D F+
Sbjct: 620 HTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEI-KAHEDEVLCCAFSTDDRFI 678
Query: 379 AMAE-----------PADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDR 427
A + VH YD + E+ F + + + F+ +WD
Sbjct: 679 ATCSVDKKVKIWNSMTGELVHTYDEHS--EQVNCCHFTNSSHHLLLATGSSDCFLKLWD- 735
Query: 428 TYGSLLQYNRCRNYTY 443
L CRN +
Sbjct: 736 -----LNQKECRNTMF 746
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 62/146 (42%), Gaps = 4/146 (2%)
Query: 281 VNHTSLSPDGKLLVIVGDNPEGILVD--SQTGKAIMPLCGHLDFSFASAWHPDGRIFATG 338
+ L PDG L++ G+ + D + T + L +A A PD ++ +
Sbjct: 100 IRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSC 159
Query: 339 NQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEK 398
D VWD+ N + V +G+ I ++DG + + V +D + G +
Sbjct: 160 CSDGNIAVWDLHNQTL-VRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQL 218
Query: 399 EQEIDFFGEISGMTFSPDTEALFIGV 424
+Q DF +I + + P E L +G+
Sbjct: 219 QQH-DFTSQIFSLGYCPTGEWLAVGM 243
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/130 (20%), Positives = 59/130 (45%), Gaps = 4/130 (3%)
Query: 267 ERFQLSKHFSFPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFAS 326
E++ LS H S PV P ++V ++ + D +TG L GH D
Sbjct: 100 EKYALSGHRS---PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDI 156
Query: 327 AWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADF 386
++ G++ A+ + D T ++WD + + + + G+ + S+ +G+ + A
Sbjct: 157 SFDHSGKLLASCSADMTIKLWDFQGF-ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKT 215
Query: 387 VHVYDAKNGF 396
+ +++ + G+
Sbjct: 216 IKMWEVQTGY 225
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 306 DSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGA 365
D TG +M L GH ++ +H G+ + DKT RVWD +N + + L +
Sbjct: 324 DVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKN-KRCMKTLNAHEHF 382
Query: 366 IRSIRFTSDGNFMAMAEPADFVHVYDAK 393
+ S+ F ++ V V++ +
Sbjct: 383 VTSLDFHKTAPYVVTGSVDQTVKVWECR 410
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 49/102 (48%), Gaps = 1/102 (0%)
Query: 281 VNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQ 340
V+ S+ P+G +V + + + QTG + GH ++ + DG + A+ +
Sbjct: 195 VSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSN 254
Query: 341 DKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAE 382
D+T RVW V + A L+ + + I + + ++ +++E
Sbjct: 255 DQTVRVWVVAT-KECKAELREHRHVVECISWAPESSYSSISE 295
Score = 34.7 bits (78), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 332 GRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYD 391
G +G++DKT ++WDV + + L G+ +R + F S G F+ + V+D
Sbjct: 308 GPFLLSGSRDKTIKMWDV-STGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWD 366
Query: 392 AKN 394
KN
Sbjct: 367 YKN 369
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/132 (19%), Positives = 52/132 (39%), Gaps = 7/132 (5%)
Query: 223 VSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFD----MERFQLSKHFSFP 278
+S+ ++Y + E S G ++ + D ++ +D M L H ++
Sbjct: 282 ISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW- 340
Query: 279 WPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATG 338
V GK ++ D+ + D + + + L H F + +H TG
Sbjct: 341 --VRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTG 398
Query: 339 NQDKTCRVWDVR 350
+ D+T +VW+ R
Sbjct: 399 SVDQTVKVWECR 410
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 64/156 (41%), Gaps = 5/156 (3%)
Query: 263 DFDMERFQLSKHFSFPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDF 322
++ + + L H F V+ +S DG+ + + L D TG GH
Sbjct: 51 NYGIPQRALRGHSHF---VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKD 107
Query: 323 SFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFT--SDGNFMAM 380
+ A+ D R +G++DKT ++W+ + K + + + +RF+ S +
Sbjct: 108 VLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVS 167
Query: 381 AEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPD 416
V V++ N K I G ++ +T SPD
Sbjct: 168 CGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPD 203
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 88/221 (39%), Gaps = 21/221 (9%)
Query: 188 GFTQTQVSTLAVRDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPS 247
G T+ +S DN I G + + I K + GV C T DE+ + SP+
Sbjct: 103 GHTKDVLSVAFSSDNRQIVSGSRDKTI-KLWNTLGV--CKYTVQDESHSEWVSCVRFSPN 159
Query: 248 GGIHFMASNNDCG----VRDFDMERFQL-SKHFSFPWPVNHTSLSPDGKLLVIVGDNPEG 302
+ S CG V+ +++ +L + H +N ++SPDG L G + +
Sbjct: 160 SSNPIIVS---CGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQA 216
Query: 303 ILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWD------VRNLSKSV 356
+L D GK + L G D A + P+ R + + ++WD V L + V
Sbjct: 217 MLWDLNEGKHLYTLDGG-DIINALCFSPN-RYWLCAATGPSIKIWDLEGKIIVDELKQEV 274
Query: 357 AVL--KGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNG 395
K S+ +++DG + + V V+ G
Sbjct: 275 ISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 315
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 47/120 (39%), Gaps = 7/120 (5%)
Query: 330 PDGRIFATGNQDKTCRVW----DVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPAD 385
PD + + ++DKT +W D N L+G+ + + +SDG F
Sbjct: 28 PD--MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDG 85
Query: 386 FVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDRTYGSLLQYNRCRNYTYLD 445
+ ++D G + + ++ + FS D + G D+T C+ YT D
Sbjct: 86 TLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCK-YTVQD 144
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 64/156 (41%), Gaps = 5/156 (3%)
Query: 263 DFDMERFQLSKHFSFPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDF 322
++ + + L H F V+ +S DG+ + + L D TG GH
Sbjct: 74 NYGIPQRALRGHSHF---VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKD 130
Query: 323 SFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFT--SDGNFMAM 380
+ A+ D R +G++DKT ++W+ + K + + + +RF+ S +
Sbjct: 131 VLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVS 190
Query: 381 AEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPD 416
V V++ N K I G ++ +T SPD
Sbjct: 191 CGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPD 226
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 88/221 (39%), Gaps = 21/221 (9%)
Query: 188 GFTQTQVSTLAVRDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPS 247
G T+ +S DN I G + + I K + GV C T DE+ + SP+
Sbjct: 126 GHTKDVLSVAFSSDNRQIVSGSRDKTI-KLWNTLGV--CKYTVQDESHSEWVSCVRFSPN 182
Query: 248 GGIHFMASNNDCG----VRDFDMERFQL-SKHFSFPWPVNHTSLSPDGKLLVIVGDNPEG 302
+ S CG V+ +++ +L + H +N ++SPDG L G + +
Sbjct: 183 SSNPIIVS---CGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQA 239
Query: 303 ILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWD------VRNLSKSV 356
+L D GK + L G D A + P+ R + + ++WD V L + V
Sbjct: 240 MLWDLNEGKHLYTLDGG-DIINALCFSPN-RYWLCAATGPSIKIWDLEGKIIVDELKQEV 297
Query: 357 AVL--KGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNG 395
K S+ +++DG + + V V+ G
Sbjct: 298 ISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 338
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 47/120 (39%), Gaps = 7/120 (5%)
Query: 330 PDGRIFATGNQDKTCRVW----DVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPAD 385
PD + + ++DKT +W D N L+G+ + + +SDG F
Sbjct: 51 PD--MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDG 108
Query: 386 FVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDRTYGSLLQYNRCRNYTYLD 445
+ ++D G + + ++ + FS D + G D+T C+ YT D
Sbjct: 109 TLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCK-YTVQD 167
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 54/115 (46%), Gaps = 10/115 (8%)
Query: 285 SLSPDGKLLVIVGDNPEGILV-DSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKT 343
SL DG + V+ G I V D +TG I L GH S S I +GN D T
Sbjct: 284 SLQFDG-IHVVSGSLDTSIRVWDVETGNCIHTLTGHQ--SLTSGMELKDNILVSGNADST 340
Query: 344 CRVWDVRNLSKSVAVLKG---NLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNG 395
++WD++ + + L+G + A+ ++F + NF+ + V ++D K G
Sbjct: 341 VKIWDIKT-GQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKTG 392
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 51/134 (38%), Gaps = 10/134 (7%)
Query: 306 DSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGA 365
D +TG+ + L GH+ + DGR +G D +VWD + L+G+
Sbjct: 225 DIETGQCLHVLMGHV--AAVRCVQYDGRRVVSGAYDFMVKVWDPET-ETCLHTLQGHTNR 281
Query: 366 IRSIRFTSDGNFMAMAEPADFVHVYDAKNG-----FEKEQEIDFFGEISGMTFSPDTEAL 420
+ S++F DG + + V+D + G Q + E+
Sbjct: 282 VYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADS 339
Query: 421 FIGVWDRTYGSLLQ 434
+ +WD G LQ
Sbjct: 340 TVKIWDIKTGQCLQ 353
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 64/173 (36%), Gaps = 12/173 (6%)
Query: 270 QLSKHFSFPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWH 329
+L H +F V+ +LS +G V + L + Q G+ GH + A+
Sbjct: 62 RLEGHSAF---VSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFS 118
Query: 330 PDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTS--DGNFMAMAEPADFV 387
PD R +G +D RVW+V+ + + +RF+ D + + V
Sbjct: 119 PDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLV 178
Query: 388 HVYDAKNGFEKEQEIDFFGEISGMTFSPDTEAL-------FIGVWDRTYGSLL 433
V+D G ++ +T SPD +WD T G L
Sbjct: 179 KVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEAL 231
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 53/135 (39%), Gaps = 20/135 (14%)
Query: 228 RTTYDENAITNAV-EIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFSFPWPVNHTSL 286
R D TN V + SP G + +S+ D R +D+ + + + P+N
Sbjct: 187 RLVTDLKGHTNYVTSVTVSPDGSL-CASSDKDGVARLWDLTKGEALSEMAAGAPINQICF 245
Query: 287 SPD--------GKLLVIVGDNPEGILVD----SQTGKAIMPLCGHLDFSFASAWHPDGRI 334
SP+ K + I + I+V+ Q K I+P C + AW DG
Sbjct: 246 SPNRYWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPEC------VSIAWSADGST 299
Query: 335 FATGNQDKTCRVWDV 349
+G D RVW V
Sbjct: 300 LYSGYTDNVIRVWGV 314
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 59/142 (41%), Gaps = 10/142 (7%)
Query: 291 KLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVR 350
K L+ G NP+ + G L GH F A +G + + D + R+W+++
Sbjct: 38 KTLLSWGPNPDRHSSECSYGLPDRRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQ 97
Query: 351 NLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAK----NGFEKEQEIDFFG 406
N L G+ + S+ F+ D + + + V++ K + + D+
Sbjct: 98 NGQCQYKFL-GHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDW-- 154
Query: 407 EISGMTFSPDTEALFI--GVWD 426
+S + FSP +A I G WD
Sbjct: 155 -VSCVRFSPSLDAPVIVSGGWD 175
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 58/136 (42%), Gaps = 18/136 (13%)
Query: 311 KAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDV--RNLSKSVAVLKGNLGAIRS 368
+ + L GH + + AW P G + AT ++DK+ VW+V + + V+VL + ++
Sbjct: 96 ECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKH 155
Query: 369 IRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFF---------GEISGMTFSPDTEA 419
+ + +A A D V +Y +E+E D+ + + F P +
Sbjct: 156 VVWHPSQELLASASYDDTVKLY-------REEEDDWVCCATLEGHESTVWSLAFDPSGQR 208
Query: 420 LFIGVWDRTYGSLLQY 435
L DRT QY
Sbjct: 209 LASCSDDRTVRIWRQY 224
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 11/81 (13%)
Query: 327 AWHPDGRIFATGNQDKTCRVWDVRN---LSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEP 383
AW+P G + A+ D+ R+W + KSV + +G+ +R + ++ GN++A A
Sbjct: 23 AWNPAGTLLASCGGDRRIRIWGTEGDSWICKSV-LSEGHQRTVRKVAWSPCGNYLASAS- 80
Query: 384 ADFVHVYDAKNGFEKEQEIDF 404
+DA K+ + DF
Sbjct: 81 ------FDATTCIWKKNQDDF 95
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 47/118 (39%), Gaps = 14/118 (11%)
Query: 246 PSGGIHFMASNNDCGVRDFDMERFQL----SKHFSFPWPVNHTSLSPDGKLLVIVGDNPE 301
PS ++ ++D V F+ F+ +H F V+ +PDG L G +
Sbjct: 157 PSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKF---VHSVRYNPDGSLFASTGGDGT 213
Query: 302 GILVDSQTGKAI-------MPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNL 352
+L + G + H F W PDG A+ + DKT ++W+V L
Sbjct: 214 IVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL 271
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 327 AWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKG 361
+W PD ATG+ D + VW++ S ++KG
Sbjct: 543 SWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKG 577
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 59/137 (43%), Gaps = 12/137 (8%)
Query: 294 VIVGDNPEGILV-DSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNL 352
VI G + + I V DS K ++ L GH D + + G I +G+ D+T RVWD++
Sbjct: 135 VITGADDKXIRVYDSINKKFLLQLSGH-DGGVWALKYAHGGILVSGSTDRTVRVWDIKK- 192
Query: 353 SKSVAVLKGNLGAIRSIRFTSDGN--FMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISG 410
V +G+ +R + N ++ + +HV+ KE + GE
Sbjct: 193 GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK----LPKESSVPDHGEEHD 248
Query: 411 MTF---SPDTEALFIGV 424
+P+ F+GV
Sbjct: 249 YPLVFHTPEENPYFVGV 265
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/110 (20%), Positives = 50/110 (45%), Gaps = 3/110 (2%)
Query: 285 SLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTC 344
++S G ++V + I+ D K + L GH D +++ + + + + + D T
Sbjct: 275 TVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTI 334
Query: 345 RVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKN 394
R+WD+ N + L+G+ + +R + F+ A + +DA +
Sbjct: 335 RIWDLEN-GELXYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDAND 381
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 332 GRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYD 391
G I +G+ D T VWDV K + +L G+ I S + + A + ++D
Sbjct: 280 GNIVVSGSYDNTLIVWDVAQ-XKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWD 338
Query: 392 AKNG 395
+NG
Sbjct: 339 LENG 342
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 56/124 (45%), Gaps = 7/124 (5%)
Query: 281 VNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQ 340
V H ++ DG + D LVD TG + GH F + P+G I + G +
Sbjct: 187 VRHLAVVDDGHFISCSNDGLIK-LVDXHTGDVLRTYEGHESFVYCIKLLPNGDIVSCG-E 244
Query: 341 DKTCRVWDVRNLS-KSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDA-KNGFEK 398
D+T R+W N S K V L +I S+ S+G+ + + + V ++ K+ +
Sbjct: 245 DRTVRIWSKENGSLKQVITLPAI--SIWSVDCXSNGDII-VGSSDNLVRIFSQEKSRWAS 301
Query: 399 EQEI 402
E EI
Sbjct: 302 EDEI 305
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 59/137 (43%), Gaps = 12/137 (8%)
Query: 294 VIVGDNPEGILV-DSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNL 352
VI G + + I V DS K ++ L GH D + + G I +G+ D+T RVWD++
Sbjct: 135 VITGADDKMIRVYDSINKKFLLQLSGH-DGGVWALKYAHGGILVSGSTDRTVRVWDIKK- 192
Query: 353 SKSVAVLKGNLGAIRSIRFTSDGN--FMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISG 410
V +G+ +R + N ++ + +HV+ KE + GE
Sbjct: 193 GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK----LPKESSVPDHGEEHD 248
Query: 411 MTF---SPDTEALFIGV 424
+P+ F+GV
Sbjct: 249 YPLVFHTPEENPYFVGV 265
Score = 31.6 bits (70), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 23/110 (20%), Positives = 51/110 (46%), Gaps = 3/110 (2%)
Query: 285 SLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTC 344
++S G ++V + I+ D K + L GH D +++ + + + + + D T
Sbjct: 275 TVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTI 334
Query: 345 RVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKN 394
R+WD+ N + + L+G+ + +R + F+ A + +DA +
Sbjct: 335 RIWDLEN-GELMYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDAND 381
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 332 GRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYD 391
G I +G+ D T VWDV + K + +L G+ I S + + A + ++D
Sbjct: 280 GNIVVSGSYDNTLIVWDVAQM-KCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWD 338
Query: 392 AKNG 395
+NG
Sbjct: 339 LENG 342
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 35.4 bits (80), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 288 PDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHL-DFSFASAWHPDGRIFATGNQDKTCRV 346
PD ++ D+ + D QT + L GH+ + SFA +HP I +G++D T ++
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFA-VFHPTLPIIISGSEDGTLKI 254
Query: 347 WD 348
W+
Sbjct: 255 WN 256
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 294 VIVGDNPEGILV-DSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRN 351
+IVG + I V + TG+ ++ H D+ + A HP +G+ D T ++W+ N
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 35.4 bits (80), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 288 PDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHL-DFSFASAWHPDGRIFATGNQDKTCRV 346
PD ++ D+ + D QT + L GH+ + SFA +HP I +G++D T ++
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFA-VFHPTLPIIISGSEDGTLKI 254
Query: 347 WD 348
W+
Sbjct: 255 WN 256
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 291 KLLVIVGDNPEGILV-DSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDV 349
K +IVG + I V + TG+ ++ H D+ + A HP +G+ D T ++W+
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126
Query: 350 RN 351
N
Sbjct: 127 EN 128
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 35.0 bits (79), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 30/61 (49%)
Query: 288 PDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVW 347
PD ++ D+ + D QT + L GH+ + +HP I +G++D T ++W
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Query: 348 D 348
+
Sbjct: 256 N 256
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 291 KLLVIVGDNPEGILV-DSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDV 349
K +IVG + I V + TG+ ++ H D+ + A HP +G+ D T ++W+
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126
Query: 350 RN 351
N
Sbjct: 127 EN 128
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 35.0 bits (79), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 30/61 (49%)
Query: 288 PDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVW 347
PD ++ D+ + D QT + L GH+ + +HP I +G++D T ++W
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Query: 348 D 348
+
Sbjct: 256 N 256
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 291 KLLVIVGDNPEGILV-DSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDV 349
K +IVG + I V + TG+ ++ H D+ + A HP +G+ D T ++W+
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126
Query: 350 RN 351
N
Sbjct: 127 EN 128
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 334 IFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPAD-FVHVYD- 391
I ATG+ DKT +WD+RNL + + + I ++++ + + D +HV+D
Sbjct: 296 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 355
Query: 392 AKNGFEKEQE 401
+K G E+ E
Sbjct: 356 SKIGEEQSTE 365
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 334 IFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPAD-FVHVYD- 391
I ATG+ DKT +WD+RNL + + + I ++++ + + D +HV+D
Sbjct: 292 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 351
Query: 392 AKNGFEKEQE 401
+K G E+ E
Sbjct: 352 SKIGEEQSTE 361
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 334 IFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPAD-FVHVYD- 391
I ATG+ DKT +WD+RNL + + + I ++++ + + D +HV+D
Sbjct: 294 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 353
Query: 392 AKNGFEKEQE 401
+K G E+ E
Sbjct: 354 SKIGEEQSTE 363
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 3/103 (2%)
Query: 293 LVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIF-ATGNQDKTCRVWDVRN 351
+V+ GDN +++ + GK + L H A +P F AT + D+T ++WD+R
Sbjct: 223 MVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQ 282
Query: 352 LSKSVAVLKG--NLGAIRSIRFTSDGNFMAMAEPADFVHVYDA 392
+ + L + + + F+ DG + + + VY A
Sbjct: 283 VRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSA 325
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 45/118 (38%), Gaps = 16/118 (13%)
Query: 261 VRDFDMERFQLSKHFSFPW--PVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCG 318
+ D R + S +S P PVN SPDG L+ E + + + L
Sbjct: 277 IWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIP 336
Query: 319 HLDFSF------ASAWHPDGRIFATGNQD----KTCRVWDVRNLSKSVAVLKGNLGAI 366
H F +AWHP + G K+C +++R ++ V GN G +
Sbjct: 337 HPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELR----TIDVFDGNSGKM 390
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 5/112 (4%)
Query: 313 IMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFT 372
I L GH AW DG A+G D ++WD R+ N A++++ +
Sbjct: 210 IGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHN-AAVKAVAWC 268
Query: 373 S-DGNFMAMAEPA--DFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALF 421
N +A +H ++A G + +D +++ + +SP ++ +
Sbjct: 269 PWQSNLLATGGGTMDKQIHFWNAATG-ARVNTVDAGSQVTSLIWSPHSKEIM 319
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/129 (18%), Positives = 55/129 (42%), Gaps = 2/129 (1%)
Query: 287 SPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRV 346
S DG L + N + D ++ + + GH +W + + ++G++
Sbjct: 143 SHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHH 200
Query: 347 WDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFG 406
DVR + + L+G+ + + + SDG +A + V ++DA++ K + +
Sbjct: 201 HDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNA 260
Query: 407 EISGMTFSP 415
+ + + P
Sbjct: 261 AVKAVAWCP 269
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 3/103 (2%)
Query: 293 LVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIF-ATGNQDKTCRVWDVRN 351
+V+ GDN +++ + GK + L H A +P F AT + D+T ++WD+R
Sbjct: 223 MVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQ 282
Query: 352 LSKSVAVLKG--NLGAIRSIRFTSDGNFMAMAEPADFVHVYDA 392
+ + L + + + F+ DG + + + VY A
Sbjct: 283 VRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSA 325
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 45/118 (38%), Gaps = 16/118 (13%)
Query: 261 VRDFDMERFQLSKHFSFPW--PVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCG 318
+ D R + S +S P PVN SPDG L+ E + + + L
Sbjct: 277 IWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIP 336
Query: 319 HLDFSF------ASAWHPDGRIFATGNQD----KTCRVWDVRNLSKSVAVLKGNLGAI 366
H F +AWHP + G K+C +++R ++ V GN G +
Sbjct: 337 HPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELR----TIDVFDGNSGKM 390
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 3/103 (2%)
Query: 293 LVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIF-ATGNQDKTCRVWDVRN 351
+V+ GDN +++ + GK + L H A +P F AT + D+T ++WD+R
Sbjct: 224 MVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQ 283
Query: 352 LSKSVAVLKG--NLGAIRSIRFTSDGNFMAMAEPADFVHVYDA 392
+ + L + + + F+ DG + + + VY A
Sbjct: 284 VRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSA 326
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 45/118 (38%), Gaps = 16/118 (13%)
Query: 261 VRDFDMERFQLSKHFSFPW--PVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCG 318
+ D R + S +S P PVN SPDG L+ E + + + L
Sbjct: 278 IWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIP 337
Query: 319 HLDFSF------ASAWHPDGRIFATGNQD----KTCRVWDVRNLSKSVAVLKGNLGAI 366
H F +AWHP + G K+C +++R ++ V GN G +
Sbjct: 338 HPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELR----TIDVFDGNSGKM 391
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 328 WHPDGRIFATGNQDKTCRVW-DVRNLSKSVAVLKGNLGAIRSIRF 371
WHP + A+ + D T R+W D + + VAVL G+ G + S F
Sbjct: 161 WHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDF 205
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 18/89 (20%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
Query: 327 AWHPDGRIFATGNQDKTCRVWDVRNLSKS------VAVLKGNLGAIRSIRFTSDGNFMAM 380
AW P + A G+ D T +W + +A+++G+ ++ + +++DG ++A
Sbjct: 65 AWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLAT 124
Query: 381 AEPADFVHVYDAKNGFEKEQEIDFFGEIS 409
V +++ E+ + I E S
Sbjct: 125 CSRDKSVWIWETDESGEEYECISVLQEHS 153
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 329 HPDGR-IFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRF 371
HP+ + + ATG QD +WDVR + V++LK + + + F
Sbjct: 245 HPNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHF 288
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 2/107 (1%)
Query: 289 DGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWD 348
+G L + + E L D Q K + + H + +W + I ++G++ D
Sbjct: 169 EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHD 226
Query: 349 VRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNG 395
VR VA L G+ + +R+ DG +A + V+V+ + G
Sbjct: 227 VRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPG 273
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 2/107 (1%)
Query: 289 DGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWD 348
+G L + + E L D Q K + + H + +W + I ++G++ D
Sbjct: 158 EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHD 215
Query: 349 VRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNG 395
VR VA L G+ + +R+ DG +A + V+V+ + G
Sbjct: 216 VRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPG 262
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 54/135 (40%), Gaps = 18/135 (13%)
Query: 258 DCGVRDFDMERFQLSKHFSFPWPVNHTSLSPDGKLLVIVGDN----PEGILV-----DSQ 308
D ++ +D+ Q + P PV SP G + + DN P I + DS
Sbjct: 95 DYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSA 154
Query: 309 TGK-------AIMPLCGH--LDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVL 359
T + I + H LD + + W G+ G++D +DV N + V +
Sbjct: 155 THELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSI 214
Query: 360 KGNLGAIRSIRFTSD 374
+ +I ++F+ D
Sbjct: 215 DLHEKSISDMQFSPD 229
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 13/117 (11%)
Query: 266 MERFQLSKHFSFPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFA 325
M+ +L+ H P+ + +G LL + + S G+ + L GH
Sbjct: 23 MKAIKLTGH---ERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHT----G 75
Query: 326 SAWHPDGRIF----ATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFM 378
+ W D F TG+ D + ++WDV N + VA K + ++ + F+ GN+
Sbjct: 76 TIWSIDVDCFTKYCVTGSADYSIKLWDVSN-GQCVATWKSPV-PVKRVEFSPCGNYF 130
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 12/77 (15%)
Query: 281 VNHTSLSPD-GKLLVIVGDNPEGILVDSQTGKAIM-------PLCGHLDFSFASAWHPDG 332
V SPD G+ ++ VG + + D ++G+ + P+ G + FA +W D
Sbjct: 209 VRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGI---FALSWL-DS 264
Query: 333 RIFATGNQDKTCRVWDV 349
+ FAT D T RVWDV
Sbjct: 265 QKFATVGADATIRVWDV 281
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 12/77 (15%)
Query: 281 VNHTSLSPD-GKLLVIVGDNPEGILVDSQTGKAIM-------PLCGHLDFSFASAWHPDG 332
V SPD G+ ++ VG + + D ++G+ + P+ G + FA +W D
Sbjct: 209 VRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGI---FALSWL-DS 264
Query: 333 RIFATGNQDKTCRVWDV 349
+ FAT D T RVWDV
Sbjct: 265 QKFATVGADATIRVWDV 281
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 334 IFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPAD-FVHVYD- 391
I ATG+ DKT +WD+RNL + + + I + ++ + + D ++V+D
Sbjct: 290 ILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349
Query: 392 AKNGFEKEQE 401
+K G E+ E
Sbjct: 350 SKIGEEQSAE 359
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 334 IFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPAD-FVHVYD- 391
I ATG+ DKT +WD+RNL + + + I + ++ + + D ++V+D
Sbjct: 290 ILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349
Query: 392 AKNGFEKEQE 401
+K G E+ E
Sbjct: 350 SKIGEEQSAE 359
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 32.0 bits (71), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 28/131 (21%), Positives = 53/131 (40%), Gaps = 6/131 (4%)
Query: 289 DGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWD 348
+G L + + E L D Q K + + H + +W + I ++G++ D
Sbjct: 78 EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHD 135
Query: 349 VRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFF--- 405
VR VA L G+ + +R+ DG +A + V+V+ + G + F
Sbjct: 136 VRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQH 195
Query: 406 -GEISGMTFSP 415
G + + + P
Sbjct: 196 QGAVKAVAWCP 206
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 330 PDGRIFATGNQDKTCRVWDVRNLS 353
P+G+ ATG +DK +WD+ NL+
Sbjct: 223 PNGKYIATGGKDKKLLIWDILNLT 246
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 31.6 bits (70), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 334 IFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPAD-FVHVYD- 391
I ATG+ DKT +WD+RNL + + + I ++++ + + D ++V+D
Sbjct: 288 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDL 347
Query: 392 AKNGFEKEQE 401
+K G E+ E
Sbjct: 348 SKIGEEQSPE 357
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 6/103 (5%)
Query: 289 DGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWD 348
D K++ + DN I D T + L GH + D R+ TG+ D T RVWD
Sbjct: 143 DQKIVSGLRDNTIKIW-DKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWD 199
Query: 349 VRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYD 391
V N + + L + A+ +RF + M + V+D
Sbjct: 200 V-NTGEMLNTLIHHCEAVLHLRF--NNGMMVTCSKDRSIAVWD 239
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 333 RIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRF 371
R+ +G+ D T R+WD+ + VL+G+ +R IRF
Sbjct: 307 RLVVSGSSDNTIRLWDI-ECGACLRVLEGHEELVRCIRF 344
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 55/138 (39%), Gaps = 20/138 (14%)
Query: 311 KAIMPLCGHLDFSFASAWHP-DGRIFATGNQDKTCRVWDVRN------LSKSVAVLKGNL 363
K + +CGH AW P + + A+G++D T VW++ + L + V L+G+
Sbjct: 72 KNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHT 131
Query: 364 GAIRSIRF-TSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFI 422
+ + + + N + A + + V+D G + +T PD I
Sbjct: 132 KRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTG------------AAVLTLGPDVHPDTI 179
Query: 423 GVWDRTYGSLLQYNRCRN 440
D + L CR+
Sbjct: 180 YSVDWSRDGALICTSCRD 197
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 59/132 (44%), Gaps = 15/132 (11%)
Query: 303 ILV-DSQTGKAIMPLCG--HLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVL 359
ILV D TG A++ L H D ++ W DG + T +DK RV + R +
Sbjct: 156 ILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKD 215
Query: 360 KGNLGAIRSIR--FTSDGN-----FMAMAEPADFVHVYDAKNGFEK--EQEIDFFGEISG 410
+ + G R + F S+G F M+E V ++D K+ E QE+D +
Sbjct: 216 RPHEGT-RPVHAVFVSEGKILTTGFSRMSE--RQVALWDTKHLEEPLSLQELDTSSGVLL 272
Query: 411 MTFSPDTEALFI 422
F PDT +++
Sbjct: 273 PFFDPDTNIVYL 284
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 59/144 (40%), Gaps = 12/144 (8%)
Query: 281 VNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQ 340
V +L+ DG + + L D TG+ GH + + +G++
Sbjct: 62 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSR 121
Query: 341 DKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFT-----SDGNFMAMAEPADFVHVYDAKNG 395
DKT +VW ++ + +A L G+ + +R D + ++ D + A N
Sbjct: 122 DKTIKVWTIKG--QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGND--KMVKAWNL 177
Query: 396 FEKEQEIDFFG---EISGMTFSPD 416
+ + E DF G I+ +T SPD
Sbjct: 178 NQFQIEADFIGHNSNINTLTASPD 201
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 316 LCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDV 349
L GH + A PDG + A+G +D +WD+
Sbjct: 557 LAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDL 590
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 59/144 (40%), Gaps = 12/144 (8%)
Query: 281 VNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQ 340
V +L+ DG + + L D TG+ GH + + +G++
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSR 127
Query: 341 DKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFT-----SDGNFMAMAEPADFVHVYDAKNG 395
DKT +VW ++ + +A L G+ + +R D + ++ D + A N
Sbjct: 128 DKTIKVWTIKG--QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGND--KMVKAWNL 183
Query: 396 FEKEQEIDFFG---EISGMTFSPD 416
+ + E DF G I+ +T SPD
Sbjct: 184 NQFQIEADFIGHNSNINTLTASPD 207
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 59/144 (40%), Gaps = 12/144 (8%)
Query: 281 VNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQ 340
V +L+ DG + + L D TG+ GH + + +G++
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSR 127
Query: 341 DKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFT-----SDGNFMAMAEPADFVHVYDAKNG 395
DKT +VW ++ + +A L G+ + +R D + ++ D + A N
Sbjct: 128 DKTIKVWTIKG--QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGND--KMVKAWNL 183
Query: 396 FEKEQEIDFFG---EISGMTFSPD 416
+ + E DF G I+ +T SPD
Sbjct: 184 NQFQIEADFIGHNSNINTLTASPD 207
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 59/144 (40%), Gaps = 12/144 (8%)
Query: 281 VNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQ 340
V +L+ DG + + L D TG+ GH + + +G++
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSR 127
Query: 341 DKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFT-----SDGNFMAMAEPADFVHVYDAKNG 395
DKT +VW ++ + +A L G+ + +R D + ++ D + A N
Sbjct: 128 DKTIKVWTIKG--QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGND--KMVKAWNL 183
Query: 396 FEKEQEIDFFG---EISGMTFSPD 416
+ + E DF G I+ +T SPD
Sbjct: 184 NQFQIEADFIGHNSNINTLTASPD 207
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 59/132 (44%), Gaps = 15/132 (11%)
Query: 303 ILV-DSQTGKAIMPLCG--HLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVL 359
ILV D TG A++ L H D ++ W DG + T +DK RV + R +
Sbjct: 156 ILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKD 215
Query: 360 KGNLGAIRSIR--FTSDGN-----FMAMAEPADFVHVYDAKNGFEK--EQEIDFFGEISG 410
+ + G R + F S+G F M+E V ++D K+ E QE+D +
Sbjct: 216 RPHEGT-RPVHAVFVSEGKILTTGFSRMSE--RQVALWDTKHLEEPLSLQELDTSSGVLL 272
Query: 411 MTFSPDTEALFI 422
F PDT +++
Sbjct: 273 PFFDPDTNIVYL 284
>pdb|3ZWU|A Chain A, Pseudomonas Fluorescens Phox In Complex With Vanadate, A
Transition State Analogue
pdb|3ZWU|B Chain B, Pseudomonas Fluorescens Phox In Complex With Vanadate, A
Transition State Analogue
pdb|4A9V|A Chain A, Pseudomonas Fluorescens Phox
pdb|4A9X|A Chain A, Pseudomonas Fluorescens Phox In Complex With The Substrate
Analogue Appcp
Length = 592
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 9/18 (50%), Positives = 16/18 (88%)
Query: 407 EISGMTFSPDTEALFIGV 424
E++G++FSPD + LF+G+
Sbjct: 532 EVTGISFSPDQKTLFVGI 549
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 59/144 (40%), Gaps = 12/144 (8%)
Query: 281 VNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQ 340
V +L+ DG + + L D TG+ GH + + +G++
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSR 127
Query: 341 DKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFT-----SDGNFMAMAEPADFVHVYDAKNG 395
DKT +VW ++ + +A L G+ + +R D + ++ D + A N
Sbjct: 128 DKTIKVWTIKG--QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGND--KMVKAWNL 183
Query: 396 FEKEQEIDFFG---EISGMTFSPD 416
+ + E DF G I+ +T SPD
Sbjct: 184 NQFQIEADFIGHNSNINTLTASPD 207
>pdb|3NYE|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa D-Arginine
Dehydrogenase In Complex With Imino-Arginine
pdb|3NYF|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa D-Arginine
Dehydrogenase In Complex With Imino-Histidine
pdb|3NYC|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa D-Arginine
Dehydrogenase
pdb|3SM8|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa D-Arginine
Dehydrogenase In Complex With An (N5) Flavin Adduct
Length = 381
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 282 NHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHP 330
H LSP +++V D+PE + ++GKA++P LD A + P
Sbjct: 84 EHPLLSPRPEMVVDFSDDPEELRRQYESGKALVPQMRLLDAEQACSIVP 132
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,876,961
Number of Sequences: 62578
Number of extensions: 581498
Number of successful extensions: 1772
Number of sequences better than 100.0: 82
Number of HSP's better than 100.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1396
Number of HSP's gapped (non-prelim): 266
length of query: 448
length of database: 14,973,337
effective HSP length: 102
effective length of query: 346
effective length of database: 8,590,381
effective search space: 2972271826
effective search space used: 2972271826
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)