Query 013184
Match_columns 448
No_of_seqs 671 out of 3585
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 01:15:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013184.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013184hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0272 U4/U6 small nuclear ri 100.0 5.7E-41 1.2E-45 304.1 22.2 264 142-430 185-455 (459)
2 KOG0272 U4/U6 small nuclear ri 100.0 2.9E-38 6.3E-43 286.5 19.3 232 193-430 177-413 (459)
3 KOG0286 G-protein beta subunit 100.0 7.5E-36 1.6E-40 259.2 31.8 270 138-430 61-340 (343)
4 KOG0271 Notchless-like WD40 re 100.0 6.2E-37 1.4E-41 274.6 25.1 270 140-431 123-435 (480)
5 KOG0271 Notchless-like WD40 re 100.0 3E-37 6.5E-42 276.6 21.7 266 138-428 163-474 (480)
6 KOG0315 G-protein beta subunit 100.0 9.7E-34 2.1E-38 240.9 26.9 263 129-414 35-309 (311)
7 KOG0263 Transcription initiati 100.0 8.2E-35 1.8E-39 283.2 22.2 234 193-430 380-644 (707)
8 KOG0284 Polyadenylation factor 100.0 1.4E-34 3E-39 261.6 18.1 270 137-431 101-376 (464)
9 KOG0279 G protein beta subunit 100.0 3E-32 6.5E-37 235.5 30.1 264 142-430 25-308 (315)
10 KOG0295 WD40 repeat-containing 100.0 1.1E-32 2.4E-37 246.1 24.5 270 138-431 114-402 (406)
11 KOG0315 G-protein beta subunit 100.0 1.1E-31 2.3E-36 228.5 28.9 254 152-428 19-281 (311)
12 KOG0263 Transcription initiati 100.0 1.6E-32 3.5E-37 267.2 27.0 197 193-396 453-652 (707)
13 KOG0286 G-protein beta subunit 100.0 2.4E-31 5.3E-36 231.2 31.2 236 169-428 49-296 (343)
14 KOG0273 Beta-transducin family 100.0 8.3E-32 1.8E-36 247.7 29.2 270 134-431 237-519 (524)
15 KOG0279 G protein beta subunit 100.0 3.2E-31 7E-36 229.2 28.8 225 193-424 17-252 (315)
16 KOG0319 WD40-repeat-containing 100.0 1.3E-31 2.7E-36 258.6 26.4 272 140-436 332-617 (775)
17 KOG0265 U5 snRNP-specific prot 100.0 7.3E-31 1.6E-35 229.1 26.6 268 140-429 55-332 (338)
18 KOG0273 Beta-transducin family 100.0 6.3E-31 1.4E-35 241.9 26.5 274 140-428 186-475 (524)
19 KOG0291 WD40-repeat-containing 100.0 5.4E-30 1.2E-34 247.7 30.4 269 134-427 309-604 (893)
20 cd00200 WD40 WD40 domain, foun 100.0 2.1E-28 4.5E-33 227.6 35.7 268 137-429 14-285 (289)
21 KOG0282 mRNA splicing factor [ 100.0 5.3E-31 1.1E-35 243.3 17.6 233 193-430 216-500 (503)
22 KOG0284 Polyadenylation factor 100.0 1.5E-31 3.2E-36 242.0 12.9 230 193-429 98-331 (464)
23 KOG0285 Pleiotropic regulator 100.0 4.4E-30 9.6E-35 228.9 21.4 246 192-447 152-400 (460)
24 KOG0266 WD40 repeat-containing 100.0 1.3E-28 2.9E-33 244.7 30.9 266 140-427 167-444 (456)
25 KOG0266 WD40 repeat-containing 100.0 1.3E-28 2.9E-33 244.7 29.5 232 193-429 161-403 (456)
26 PLN00181 protein SPA1-RELATED; 100.0 1.3E-27 2.9E-32 254.4 38.5 270 138-430 489-788 (793)
27 KOG0276 Vesicle coat complex C 100.0 6.3E-29 1.4E-33 235.7 24.7 277 119-428 9-292 (794)
28 KOG0277 Peroxisomal targeting 100.0 6.6E-29 1.4E-33 212.1 20.8 260 149-429 34-303 (311)
29 KOG0296 Angio-associated migra 100.0 4.7E-28 1E-32 216.7 27.1 280 115-429 56-392 (399)
30 KOG0281 Beta-TrCP (transducin 100.0 2.6E-30 5.6E-35 229.5 12.5 243 152-429 216-471 (499)
31 KOG0291 WD40-repeat-containing 100.0 1.6E-27 3.4E-32 230.7 31.5 230 192-428 308-543 (893)
32 KOG0285 Pleiotropic regulator 100.0 6.2E-28 1.3E-32 215.2 25.2 277 131-434 149-438 (460)
33 KOG0295 WD40 repeat-containing 100.0 1.4E-28 3.1E-33 219.9 20.8 231 193-430 110-359 (406)
34 PLN00181 protein SPA1-RELATED; 100.0 3.7E-27 8.1E-32 250.9 34.9 233 193-430 485-733 (793)
35 KOG0318 WD40 repeat stress pro 100.0 1.5E-26 3.3E-31 215.8 32.6 268 136-429 107-554 (603)
36 KOG0306 WD40-repeat-containing 100.0 1.7E-27 3.6E-32 230.4 26.9 268 137-431 378-660 (888)
37 KOG1407 WD40 repeat protein [F 100.0 6.4E-27 1.4E-31 200.8 26.7 269 136-429 24-296 (313)
38 KOG0643 Translation initiation 100.0 5.2E-27 1.1E-31 201.9 25.8 233 194-432 13-314 (327)
39 KOG0313 Microtubule binding pr 100.0 5.1E-27 1.1E-31 211.0 26.6 267 139-430 111-413 (423)
40 KOG0318 WD40 repeat stress pro 100.0 3E-26 6.5E-31 213.8 32.4 267 142-429 28-344 (603)
41 KOG0281 Beta-TrCP (transducin 100.0 2.6E-29 5.7E-34 223.1 11.3 223 192-431 198-424 (499)
42 cd00200 WD40 WD40 domain, foun 100.0 2.7E-26 5.8E-31 213.3 32.3 230 193-429 11-243 (289)
43 KOG0276 Vesicle coat complex C 100.0 1.9E-27 4.2E-32 225.6 24.1 231 193-430 15-252 (794)
44 KOG0310 Conserved WD40 repeat- 100.0 4E-27 8.6E-32 218.1 25.1 259 144-429 39-303 (487)
45 KOG0265 U5 snRNP-specific prot 100.0 6.3E-27 1.4E-31 204.5 24.7 243 193-442 49-310 (338)
46 PTZ00421 coronin; Provisional 100.0 7.8E-26 1.7E-30 224.4 35.4 223 192-416 76-314 (493)
47 KOG0645 WD40 repeat protein [G 100.0 6.1E-26 1.3E-30 195.7 29.8 233 193-434 16-260 (312)
48 KOG1407 WD40 repeat protein [F 100.0 2.6E-27 5.7E-32 203.1 21.0 231 193-428 22-254 (313)
49 PTZ00420 coronin; Provisional 100.0 1.1E-25 2.4E-30 224.4 35.1 243 153-416 54-317 (568)
50 KOG0305 Anaphase promoting com 100.0 2.3E-26 4.9E-31 220.7 27.0 270 133-430 178-456 (484)
51 KOG0645 WD40 repeat protein [G 100.0 1.6E-25 3.4E-30 193.2 26.1 202 230-433 10-223 (312)
52 KOG0772 Uncharacterized conser 99.9 4.5E-26 9.7E-31 212.1 23.5 280 141-435 176-487 (641)
53 KOG0288 WD40 repeat protein Ti 99.9 5.3E-27 1.2E-31 212.9 16.8 264 140-429 183-455 (459)
54 KOG0274 Cdc4 and related F-box 99.9 1.3E-25 2.9E-30 223.1 28.3 252 146-430 220-477 (537)
55 PTZ00421 coronin; Provisional 99.9 9.1E-25 2E-29 216.8 33.1 233 194-429 25-284 (493)
56 KOG0319 WD40-repeat-containing 99.9 4.2E-26 9.2E-31 220.6 21.6 234 140-393 372-619 (775)
57 KOG0316 Conserved WD40 repeat- 99.9 1.7E-25 3.6E-30 189.4 22.0 227 192-429 18-251 (307)
58 KOG0292 Vesicle coat complex C 99.9 2.8E-25 6E-30 218.4 25.5 275 119-427 5-313 (1202)
59 KOG0282 mRNA splicing factor [ 99.9 1.7E-26 3.6E-31 213.6 15.9 230 138-391 220-503 (503)
60 KOG0316 Conserved WD40 repeat- 99.9 7E-25 1.5E-29 185.6 24.0 257 139-424 24-289 (307)
61 KOG0313 Microtubule binding pr 99.9 3.6E-25 7.8E-30 199.1 22.7 230 143-393 158-418 (423)
62 KOG0269 WD40 repeat-containing 99.9 7.7E-26 1.7E-30 219.8 19.7 276 142-431 49-336 (839)
63 KOG0292 Vesicle coat complex C 99.9 2.2E-25 4.7E-30 219.1 21.9 232 193-430 11-275 (1202)
64 KOG1036 Mitotic spindle checkp 99.9 2.9E-24 6.4E-29 188.7 26.3 261 137-425 18-294 (323)
65 KOG0264 Nucleosome remodeling 99.9 4.8E-25 1E-29 202.9 22.1 234 200-439 136-404 (422)
66 PTZ00420 coronin; Provisional 99.9 9.1E-24 2E-28 210.7 33.1 217 207-430 50-288 (568)
67 KOG0308 Conserved WD40 repeat- 99.9 1.3E-25 2.8E-30 214.3 17.0 226 200-429 36-279 (735)
68 KOG0278 Serine/threonine kinas 99.9 1.5E-25 3.3E-30 191.1 14.5 241 194-442 17-303 (334)
69 KOG0275 Conserved WD40 repeat- 99.9 6.9E-26 1.5E-30 199.8 12.8 231 195-429 219-503 (508)
70 KOG0973 Histone transcription 99.9 4.5E-24 9.7E-29 215.2 27.5 290 130-432 9-352 (942)
71 KOG0289 mRNA splicing factor [ 99.9 6E-24 1.3E-28 194.2 25.8 263 141-428 228-499 (506)
72 KOG0289 mRNA splicing factor [ 99.9 2.7E-24 5.9E-29 196.5 23.0 235 191-432 219-459 (506)
73 KOG4283 Transcription-coupled 99.9 1.8E-24 3.8E-29 188.7 20.8 203 193-397 45-280 (397)
74 KOG1446 Histone H3 (Lys4) meth 99.9 4E-23 8.7E-28 182.4 29.3 231 191-429 14-256 (311)
75 KOG0293 WD40 repeat-containing 99.9 2.4E-24 5.2E-29 195.6 21.9 268 140-431 232-509 (519)
76 KOG0640 mRNA cleavage stimulat 99.9 6.5E-24 1.4E-28 186.4 23.7 204 194-401 117-343 (430)
77 KOG0294 WD40 repeat-containing 99.9 6.9E-24 1.5E-28 186.8 23.8 230 193-431 45-277 (362)
78 KOG0772 Uncharacterized conser 99.9 1.9E-24 4.1E-29 201.3 20.9 242 193-437 169-444 (641)
79 KOG0283 WD40 repeat-containing 99.9 3.3E-24 7.1E-29 211.1 23.8 231 191-427 267-568 (712)
80 KOG0639 Transducin-like enhanc 99.9 1.8E-24 3.8E-29 200.8 19.6 264 142-428 429-697 (705)
81 KOG0277 Peroxisomal targeting 99.9 1.2E-24 2.5E-29 186.3 16.8 234 136-392 64-308 (311)
82 KOG0308 Conserved WD40 repeat- 99.9 1.1E-24 2.4E-29 208.0 18.4 271 141-431 34-323 (735)
83 KOG1332 Vesicle coat complex C 99.9 3.1E-24 6.8E-29 182.7 18.7 233 197-430 19-281 (299)
84 KOG0310 Conserved WD40 repeat- 99.9 2.2E-24 4.9E-29 199.9 19.2 230 193-432 28-265 (487)
85 KOG1446 Histone H3 (Lys4) meth 99.9 2.8E-22 6.1E-27 177.1 31.5 261 140-424 22-294 (311)
86 KOG0299 U3 snoRNP-associated p 99.9 6.6E-23 1.4E-27 188.9 27.2 288 138-439 148-460 (479)
87 KOG0268 Sof1-like rRNA process 99.9 1.3E-24 2.8E-29 194.4 15.6 251 151-430 87-340 (433)
88 KOG0306 WD40-repeat-containing 99.9 7.6E-23 1.6E-27 198.4 26.6 268 146-432 337-619 (888)
89 KOG0647 mRNA export protein (c 99.9 5.8E-23 1.3E-27 180.0 23.0 232 192-427 28-316 (347)
90 KOG0264 Nucleosome remodeling 99.9 2.4E-23 5.3E-28 191.7 21.4 198 195-394 181-405 (422)
91 KOG0278 Serine/threonine kinas 99.9 3.8E-24 8.2E-29 182.6 14.6 220 151-397 79-301 (334)
92 KOG0296 Angio-associated migra 99.9 1.6E-22 3.4E-27 181.4 25.4 243 194-445 67-373 (399)
93 KOG0641 WD40 repeat protein [G 99.9 4.3E-22 9.2E-27 167.8 26.1 233 193-430 34-298 (350)
94 KOG0274 Cdc4 and related F-box 99.9 5.3E-23 1.1E-27 204.6 24.5 227 191-430 208-436 (537)
95 KOG2096 WD40 repeat protein [G 99.9 6.4E-23 1.4E-27 180.8 21.1 176 247-424 197-392 (420)
96 KOG0305 Anaphase promoting com 99.9 1.4E-22 3E-27 194.8 23.9 257 114-395 197-463 (484)
97 KOG1274 WD40 repeat protein [G 99.9 7.5E-22 1.6E-26 195.6 29.2 266 136-431 17-296 (933)
98 KOG0641 WD40 repeat protein [G 99.9 4.4E-21 9.6E-26 161.7 29.5 237 191-429 89-343 (350)
99 KOG0301 Phospholipase A2-activ 99.9 2.9E-22 6.4E-27 192.9 25.0 258 140-432 21-285 (745)
100 KOG0973 Histone transcription 99.9 2.7E-22 5.9E-27 202.5 24.4 234 193-430 15-307 (942)
101 KOG0267 Microtubule severing p 99.9 3.7E-24 8.1E-29 206.6 10.2 225 194-425 31-258 (825)
102 KOG0293 WD40 repeat-containing 99.9 1E-22 2.2E-27 185.1 18.7 236 135-394 272-514 (519)
103 KOG0275 Conserved WD40 repeat- 99.9 9.6E-24 2.1E-28 186.3 10.9 191 230-424 209-412 (508)
104 KOG1332 Vesicle coat complex C 99.9 5.3E-22 1.2E-26 169.1 19.7 229 146-392 25-285 (299)
105 KOG0269 WD40 repeat-containing 99.9 1.4E-22 3E-27 197.3 17.5 227 195-422 43-280 (839)
106 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.1E-19 2.4E-24 171.6 36.8 247 151-425 9-268 (300)
107 KOG2919 Guanine nucleotide-bin 99.9 5.4E-22 1.2E-26 175.3 18.2 283 136-425 53-360 (406)
108 KOG2055 WD40 repeat protein [G 99.9 4.1E-21 8.9E-26 177.1 24.0 272 139-429 220-506 (514)
109 KOG1408 WD40 repeat protein [F 99.9 1.7E-21 3.7E-26 187.9 22.0 240 192-438 460-713 (1080)
110 KOG1274 WD40 repeat protein [G 99.9 7.8E-21 1.7E-25 188.5 26.3 232 194-437 16-261 (933)
111 KOG0301 Phospholipase A2-activ 99.9 1.2E-21 2.7E-26 188.7 20.0 226 194-430 17-244 (745)
112 KOG0268 Sof1-like rRNA process 99.9 1.3E-22 2.8E-27 181.7 12.3 225 193-430 68-297 (433)
113 KOG0294 WD40 repeat-containing 99.9 1.5E-20 3.2E-25 165.9 24.5 243 115-395 35-283 (362)
114 KOG0300 WD40 repeat-containing 99.9 4.3E-21 9.4E-26 169.2 21.0 256 151-430 168-471 (481)
115 KOG0270 WD40 repeat-containing 99.9 8.8E-21 1.9E-25 174.3 23.7 223 200-426 191-440 (463)
116 KOG0299 U3 snoRNP-associated p 99.9 4.2E-21 9.1E-26 177.1 21.3 232 193-430 144-405 (479)
117 KOG2048 WD40 repeat protein [G 99.9 3E-20 6.5E-25 178.8 27.6 236 192-434 26-274 (691)
118 KOG0643 Translation initiation 99.9 1.4E-20 3.1E-25 162.4 22.7 194 232-429 8-214 (327)
119 KOG0288 WD40 repeat protein Ti 99.9 1.2E-21 2.6E-26 178.3 16.9 213 150-390 238-458 (459)
120 KOG0639 Transducin-like enhanc 99.9 1.5E-21 3.2E-26 181.5 17.4 229 193-428 421-656 (705)
121 KOG0646 WD40 repeat protein [G 99.9 4.5E-21 9.7E-26 177.2 19.8 223 193-422 83-336 (476)
122 KOG0283 WD40 repeat-containing 99.9 4.4E-21 9.4E-26 189.3 21.0 195 192-394 370-577 (712)
123 KOG0267 Microtubule severing p 99.9 7.7E-23 1.7E-27 197.6 8.4 213 205-430 8-221 (825)
124 KOG0300 WD40 repeat-containing 99.9 6.9E-21 1.5E-25 167.9 19.7 226 193-425 150-418 (481)
125 KOG2445 Nuclear pore complex c 99.9 5.4E-20 1.2E-24 161.8 25.0 235 194-430 16-313 (361)
126 KOG0640 mRNA cleavage stimulat 99.9 3.3E-21 7.1E-26 169.5 17.1 199 227-429 105-329 (430)
127 KOG1036 Mitotic spindle checkp 99.9 5.2E-20 1.1E-24 162.1 22.7 229 191-430 13-257 (323)
128 KOG2106 Uncharacterized conser 99.9 7.5E-19 1.6E-23 163.8 31.4 261 145-435 214-518 (626)
129 KOG0302 Ribosome Assembly prot 99.9 2.4E-20 5.1E-25 168.1 20.6 232 193-427 156-431 (440)
130 KOG0647 mRNA export protein (c 99.9 2.6E-20 5.7E-25 163.4 19.9 197 229-429 22-275 (347)
131 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.4E-18 5.2E-23 162.5 34.6 254 135-415 33-300 (300)
132 KOG1273 WD40 repeat protein [G 99.9 6.1E-20 1.3E-24 161.9 21.1 240 194-441 26-293 (405)
133 KOG2055 WD40 repeat protein [G 99.9 2.8E-20 6E-25 171.7 19.5 241 192-437 214-468 (514)
134 KOG1539 WD repeat protein [Gen 99.9 1.1E-19 2.3E-24 178.6 24.6 231 191-427 395-639 (910)
135 KOG1408 WD40 repeat protein [F 99.9 1.5E-19 3.2E-24 174.6 24.8 231 196-429 329-665 (1080)
136 KOG0646 WD40 repeat protein [G 99.9 3.5E-20 7.5E-25 171.4 19.6 235 138-392 86-349 (476)
137 KOG0302 Ribosome Assembly prot 99.9 8.9E-20 1.9E-24 164.4 21.1 194 195-391 215-436 (440)
138 KOG0307 Vesicle coat complex C 99.8 4.1E-21 8.9E-26 194.9 12.5 237 193-431 66-323 (1049)
139 KOG4328 WD40 protein [Function 99.8 2.4E-19 5.3E-24 165.4 19.5 231 192-424 187-439 (498)
140 KOG2048 WD40 repeat protein [G 99.8 5.5E-18 1.2E-22 163.4 29.3 264 140-429 33-313 (691)
141 KOG4378 Nuclear protein COP1 [ 99.8 1.2E-18 2.5E-23 162.2 21.7 236 193-438 36-280 (673)
142 KOG4378 Nuclear protein COP1 [ 99.8 8.1E-19 1.7E-23 163.3 20.3 210 200-417 90-305 (673)
143 KOG2106 Uncharacterized conser 99.8 3.4E-17 7.4E-22 152.9 30.1 225 193-429 202-471 (626)
144 KOG1063 RNA polymerase II elon 99.8 3.5E-18 7.7E-23 164.9 24.4 273 139-435 20-391 (764)
145 KOG4283 Transcription-coupled 99.8 4.6E-19 1E-23 155.1 16.6 197 230-430 39-271 (397)
146 KOG0270 WD40 repeat-containing 99.8 1.8E-18 3.9E-23 159.2 20.6 201 193-398 245-454 (463)
147 KOG1009 Chromatin assembly com 99.8 4E-18 8.7E-23 155.3 22.5 244 192-441 14-377 (434)
148 KOG1034 Transcriptional repres 99.8 2.9E-18 6.3E-23 152.2 19.8 227 201-437 105-382 (385)
149 KOG0321 WD40 repeat-containing 99.8 2.7E-18 5.8E-23 164.4 18.8 253 126-395 93-393 (720)
150 KOG1524 WD40 repeat-containing 99.8 2.8E-18 6.1E-23 161.1 18.4 260 138-429 20-280 (737)
151 KOG1007 WD repeat protein TSSC 99.8 2.2E-17 4.7E-22 144.3 22.4 231 193-428 65-354 (370)
152 KOG1063 RNA polymerase II elon 99.8 1.8E-17 3.8E-22 160.2 23.4 276 138-430 273-643 (764)
153 KOG4328 WD40 protein [Function 99.8 2.1E-17 4.6E-22 152.7 22.5 253 152-425 209-484 (498)
154 KOG1273 WD40 repeat protein [G 99.8 7.7E-18 1.7E-22 148.8 18.6 191 239-431 26-222 (405)
155 KOG1538 Uncharacterized conser 99.8 1.6E-17 3.5E-22 159.6 22.2 265 135-431 15-289 (1081)
156 KOG2096 WD40 repeat protein [G 99.8 9.2E-18 2E-22 148.5 18.8 192 229-424 81-350 (420)
157 KOG0307 Vesicle coat complex C 99.8 6.2E-19 1.4E-23 179.2 13.1 241 137-396 69-330 (1049)
158 KOG2445 Nuclear pore complex c 99.8 7.7E-17 1.7E-21 142.1 24.0 235 140-393 21-318 (361)
159 KOG1539 WD repeat protein [Gen 99.8 1.8E-16 4E-21 156.1 29.0 267 142-431 84-361 (910)
160 KOG0650 WD40 repeat nucleolar 99.8 1.1E-17 2.5E-22 159.0 19.4 233 192-430 401-730 (733)
161 KOG0642 Cell-cycle nuclear pro 99.8 2.1E-18 4.5E-23 163.2 13.6 281 51-363 260-573 (577)
162 KOG0303 Actin-binding protein 99.8 5.4E-17 1.2E-21 147.4 21.8 244 200-447 43-306 (472)
163 PRK11028 6-phosphogluconolacto 99.8 2.1E-15 4.7E-20 144.8 34.3 269 147-435 4-303 (330)
164 KOG2110 Uncharacterized conser 99.8 4.5E-16 9.9E-21 140.6 26.3 224 194-430 8-243 (391)
165 KOG0322 G-protein beta subunit 99.8 1.5E-17 3.3E-22 143.5 15.5 252 113-392 4-322 (323)
166 KOG1517 Guanine nucleotide bin 99.8 1.4E-16 3.1E-21 160.3 23.6 273 137-429 1069-1375(1387)
167 COG2319 FOG: WD40 repeat [Gene 99.8 3.2E-15 7E-20 146.4 32.8 232 193-428 67-307 (466)
168 KOG1445 Tumor-specific antigen 99.7 4.2E-17 9.2E-22 155.9 17.3 200 195-395 585-800 (1012)
169 KOG0290 Conserved WD40 repeat- 99.7 4.2E-16 9.1E-21 136.4 21.7 219 202-424 114-355 (364)
170 KOG0303 Actin-binding protein 99.7 3.3E-16 7E-21 142.4 20.7 220 194-416 84-320 (472)
171 KOG1587 Cytoplasmic dynein int 99.7 6.9E-16 1.5E-20 152.9 24.8 237 193-430 244-511 (555)
172 KOG0771 Prolactin regulatory e 99.7 4.4E-17 9.5E-22 149.5 14.8 186 243-430 151-349 (398)
173 COG2319 FOG: WD40 repeat [Gene 99.7 5.1E-14 1.1E-18 137.9 36.7 265 140-426 73-350 (466)
174 KOG1007 WD repeat protein TSSC 99.7 1.3E-16 2.8E-21 139.5 15.7 216 210-429 39-283 (370)
175 KOG0321 WD40 repeat-containing 99.7 1.1E-15 2.3E-20 146.7 22.3 235 193-430 102-386 (720)
176 KOG2919 Guanine nucleotide-bin 99.7 3.4E-16 7.3E-21 138.9 16.5 217 152-384 132-361 (406)
177 KOG0290 Conserved WD40 repeat- 99.7 1.4E-15 3.1E-20 133.1 19.9 238 133-384 97-357 (364)
178 KOG0642 Cell-cycle nuclear pro 99.7 2.2E-16 4.8E-21 149.6 16.0 255 129-404 290-572 (577)
179 PRK01742 tolB translocation pr 99.7 3.2E-15 6.9E-20 148.4 24.9 211 210-433 183-399 (429)
180 PRK01742 tolB translocation pr 99.7 2.9E-15 6.4E-20 148.6 23.9 210 194-416 206-426 (429)
181 KOG0650 WD40 repeat nucleolar 99.7 1.3E-15 2.9E-20 145.1 19.6 198 225-428 391-630 (733)
182 KOG1009 Chromatin assembly com 99.7 3.8E-16 8.2E-21 142.5 14.9 193 229-424 8-249 (434)
183 KOG0322 G-protein beta subunit 99.7 3.5E-16 7.6E-21 135.2 13.9 231 193-429 16-317 (323)
184 KOG1188 WD40 repeat protein [G 99.7 3.3E-15 7.2E-20 133.7 20.5 231 202-436 41-297 (376)
185 KOG1523 Actin-related protein 99.7 2.5E-15 5.4E-20 133.4 19.5 230 193-426 12-269 (361)
186 KOG0649 WD40 repeat protein [G 99.7 1.1E-14 2.4E-19 124.6 21.7 216 196-424 17-263 (325)
187 KOG2394 WD40 protein DMR-N9 [G 99.7 7E-16 1.5E-20 145.3 15.5 165 250-415 186-384 (636)
188 KOG1524 WD40 repeat-containing 99.7 1.9E-15 4E-20 142.4 18.0 172 249-426 75-247 (737)
189 KOG2110 Uncharacterized conser 99.7 4E-14 8.7E-19 128.1 24.7 193 191-394 46-249 (391)
190 PRK11028 6-phosphogluconolacto 99.7 2.1E-13 4.5E-18 131.0 31.5 237 136-393 38-304 (330)
191 KOG1445 Tumor-specific antigen 99.7 3.2E-16 6.9E-21 150.0 11.6 177 255-432 599-791 (1012)
192 KOG1034 Transcriptional repres 99.7 2.2E-15 4.7E-20 134.1 15.8 231 202-438 56-337 (385)
193 KOG4532 WD40-like repeat conta 99.7 3.2E-14 6.9E-19 123.5 22.6 279 126-426 24-323 (344)
194 KOG1587 Cytoplasmic dynein int 99.7 1.3E-14 2.8E-19 143.9 22.2 242 139-394 249-517 (555)
195 KOG1188 WD40 repeat protein [G 99.7 1.5E-14 3.3E-19 129.5 19.9 259 147-428 43-339 (376)
196 PRK02889 tolB translocation pr 99.7 1E-13 2.3E-18 137.4 27.6 197 235-436 196-401 (427)
197 KOG0649 WD40 repeat protein [G 99.6 2.6E-13 5.7E-18 116.3 25.1 220 193-424 64-305 (325)
198 PRK03629 tolB translocation pr 99.6 2.3E-13 4.9E-18 134.9 28.9 232 154-415 180-427 (429)
199 PRK03629 tolB translocation pr 99.6 2.7E-13 5.7E-18 134.4 29.2 217 211-436 179-404 (429)
200 PF08662 eIF2A: Eukaryotic tra 99.6 4.7E-14 1E-18 123.8 21.0 155 239-400 8-185 (194)
201 KOG3881 Uncharacterized conser 99.6 2.5E-14 5.5E-19 130.2 19.1 222 190-416 104-342 (412)
202 KOG4227 WD40 repeat protein [G 99.6 3.4E-14 7.3E-19 129.2 19.8 232 193-428 58-380 (609)
203 PRK05137 tolB translocation pr 99.6 3.6E-13 7.7E-18 134.1 28.9 215 211-436 182-410 (435)
204 KOG1272 WD40-repeat-containing 99.6 1.6E-15 3.5E-20 140.6 10.4 217 195-423 133-351 (545)
205 KOG2394 WD40 protein DMR-N9 [G 99.6 4.2E-14 9.1E-19 133.5 18.9 171 200-373 184-384 (636)
206 PRK04922 tolB translocation pr 99.6 3.2E-13 7E-18 134.3 26.4 215 211-437 184-410 (433)
207 PRK04922 tolB translocation pr 99.6 4.6E-13 9.9E-18 133.2 27.2 211 194-415 206-432 (433)
208 KOG2111 Uncharacterized conser 99.6 6.3E-12 1.4E-16 111.9 28.6 234 193-437 50-324 (346)
209 KOG2139 WD40 repeat protein [G 99.6 2.8E-13 6.1E-18 122.3 20.3 216 203-426 112-366 (445)
210 KOG1517 Guanine nucleotide bin 99.6 2.2E-13 4.7E-18 137.8 21.1 189 200-395 1176-1383(1387)
211 KOG1963 WD40 repeat protein [G 99.6 1.4E-12 3.1E-17 130.1 26.0 268 139-430 23-317 (792)
212 KOG2139 WD40 repeat protein [G 99.6 2.1E-13 4.6E-18 123.1 18.3 171 251-425 112-300 (445)
213 KOG0771 Prolactin regulatory e 99.6 5.3E-14 1.1E-18 129.5 14.7 195 193-394 148-355 (398)
214 PF08662 eIF2A: Eukaryotic tra 99.6 3.4E-13 7.5E-18 118.3 19.2 139 282-426 9-164 (194)
215 PRK05137 tolB translocation pr 99.6 4.6E-12 9.9E-17 126.2 28.6 211 194-416 204-433 (435)
216 KOG2111 Uncharacterized conser 99.6 3.3E-12 7.1E-17 113.8 24.1 229 194-431 8-252 (346)
217 KOG0644 Uncharacterized conser 99.6 1.2E-14 2.5E-19 143.5 9.4 232 193-438 192-468 (1113)
218 KOG3881 Uncharacterized conser 99.5 6.9E-13 1.5E-17 121.0 19.3 233 193-430 57-315 (412)
219 KOG1523 Actin-related protein 99.5 2E-13 4.4E-18 121.4 15.3 191 237-430 13-231 (361)
220 PRK02889 tolB translocation pr 99.5 4.4E-12 9.6E-17 125.8 26.7 208 198-416 204-425 (427)
221 PF02239 Cytochrom_D1: Cytochr 99.5 7.9E-11 1.7E-15 113.6 33.2 262 151-436 14-345 (369)
222 TIGR02800 propeller_TolB tol-p 99.5 1.6E-11 3.4E-16 122.0 29.3 213 211-434 170-393 (417)
223 KOG1538 Uncharacterized conser 99.5 8E-13 1.7E-17 127.7 18.9 222 193-428 14-245 (1081)
224 KOG1963 WD40 repeat protein [G 99.5 1E-11 2.2E-16 124.1 26.9 271 138-424 166-528 (792)
225 KOG1272 WD40-repeat-containing 99.5 6.7E-14 1.4E-18 130.0 10.8 281 113-425 99-399 (545)
226 PRK01029 tolB translocation pr 99.5 1.6E-11 3.4E-16 121.4 27.1 194 242-436 190-401 (428)
227 TIGR02800 propeller_TolB tol-p 99.5 3.3E-11 7.2E-16 119.6 28.5 206 198-414 198-417 (417)
228 KOG1310 WD40 repeat protein [G 99.5 4.2E-13 9E-18 127.1 13.6 160 230-392 46-230 (758)
229 PRK04792 tolB translocation pr 99.5 5E-11 1.1E-15 118.7 29.1 213 212-435 199-422 (448)
230 KOG1310 WD40 repeat protein [G 99.5 8.6E-13 1.9E-17 125.0 15.0 206 193-401 52-311 (758)
231 PF10282 Lactonase: Lactonase, 99.5 1.5E-09 3.2E-14 104.7 38.0 238 195-435 42-321 (345)
232 PRK00178 tolB translocation pr 99.5 5.4E-11 1.2E-15 118.5 28.8 191 241-436 203-404 (430)
233 KOG2321 WD40 repeat protein [G 99.5 5.5E-12 1.2E-16 120.3 19.2 178 252-431 148-339 (703)
234 KOG0644 Uncharacterized conser 99.5 8.6E-14 1.9E-18 137.4 6.6 225 142-396 200-471 (1113)
235 KOG4547 WD40 repeat-containing 99.4 1.8E-11 4E-16 117.4 22.0 175 246-423 2-207 (541)
236 PRK04792 tolB translocation pr 99.4 8.9E-11 1.9E-15 117.0 27.8 209 197-416 225-447 (448)
237 KOG4547 WD40 repeat-containing 99.4 3.5E-11 7.5E-16 115.6 23.0 191 201-394 5-221 (541)
238 KOG1240 Protein kinase contain 99.4 5.1E-11 1.1E-15 122.8 24.8 233 194-430 1051-1329(1431)
239 PRK00178 tolB translocation pr 99.4 1.8E-10 3.8E-15 114.9 28.6 212 194-416 201-428 (430)
240 KOG4227 WD40 repeat protein [G 99.4 3.6E-12 7.8E-17 116.1 14.3 196 224-423 46-262 (609)
241 KOG0280 Uncharacterized conser 99.4 3.2E-11 6.9E-16 106.4 19.7 228 200-430 83-327 (339)
242 KOG4497 Uncharacterized conser 99.4 2.2E-10 4.7E-15 102.6 25.1 266 136-429 52-426 (447)
243 KOG1334 WD40 repeat protein [G 99.4 2.1E-12 4.6E-17 120.8 12.4 229 193-424 144-413 (559)
244 KOG4497 Uncharacterized conser 99.4 7.6E-12 1.6E-16 111.8 14.9 186 244-435 16-240 (447)
245 KOG0280 Uncharacterized conser 99.4 1.4E-10 3.1E-15 102.3 21.7 223 194-416 17-264 (339)
246 COG2706 3-carboxymuconate cycl 99.4 3.8E-09 8.3E-14 96.4 31.3 231 195-429 43-314 (346)
247 KOG0974 WD-repeat protein WDR6 99.4 1.6E-11 3.5E-16 124.7 17.4 191 198-394 96-289 (967)
248 PF10282 Lactonase: Lactonase, 99.3 1.4E-08 3E-13 98.0 35.2 260 137-413 41-345 (345)
249 KOG0974 WD-repeat protein WDR6 99.3 5E-11 1.1E-15 121.2 18.0 186 251-439 101-292 (967)
250 KOG2321 WD40 repeat protein [G 99.3 1.6E-10 3.5E-15 110.4 19.1 193 234-430 51-296 (703)
251 KOG1334 WD40 repeat protein [G 99.3 3.6E-11 7.8E-16 112.7 14.2 272 143-431 152-462 (559)
252 KOG1354 Serine/threonine prote 99.3 3.1E-10 6.6E-15 102.3 19.5 233 193-428 27-352 (433)
253 COG4946 Uncharacterized protei 99.3 2.4E-09 5.2E-14 100.4 26.0 145 277-424 358-507 (668)
254 PRK01029 tolB translocation pr 99.3 3.3E-09 7.1E-14 105.0 28.7 211 198-417 193-426 (428)
255 PRK04043 tolB translocation pr 99.3 7.1E-09 1.5E-13 102.0 30.3 192 240-438 191-400 (419)
256 PF02239 Cytochrom_D1: Cytochr 99.3 9.1E-09 2E-13 99.4 30.1 194 202-401 6-210 (369)
257 KOG1240 Protein kinase contain 99.3 9.4E-10 2E-14 113.7 23.1 246 140-398 1055-1339(1431)
258 KOG2315 Predicted translation 99.2 3.7E-09 8E-14 101.2 23.9 198 207-416 190-411 (566)
259 COG4946 Uncharacterized protei 99.2 7.7E-09 1.7E-13 97.1 25.0 222 141-382 275-507 (668)
260 TIGR02658 TTQ_MADH_Hv methylam 99.2 4.4E-07 9.6E-12 86.0 34.6 251 153-425 27-319 (352)
261 KOG1064 RAVE (regulator of V-A 99.2 3.2E-10 7E-15 120.8 13.0 182 200-402 2219-2407(2439)
262 COG5170 CDC55 Serine/threonine 99.1 2.2E-09 4.9E-14 95.6 14.7 233 193-428 28-360 (460)
263 KOG2314 Translation initiation 99.1 2.5E-08 5.5E-13 95.3 21.9 229 192-427 252-559 (698)
264 PLN02919 haloacid dehalogenase 99.1 4.1E-07 8.8E-12 99.3 32.7 250 138-397 573-892 (1057)
265 COG2706 3-carboxymuconate cycl 99.1 2.5E-06 5.5E-11 78.3 32.2 217 196-414 95-345 (346)
266 KOG1064 RAVE (regulator of V-A 99.1 8.1E-10 1.7E-14 117.9 11.0 179 238-430 2210-2393(2439)
267 PRK04043 tolB translocation pr 99.1 4.6E-07 1E-11 89.3 29.8 202 198-412 196-418 (419)
268 PLN02919 haloacid dehalogenase 99.0 1.3E-07 2.7E-12 103.2 27.8 223 200-428 579-881 (1057)
269 TIGR03300 assembly_YfgL outer 99.0 2.3E-07 4.9E-12 90.9 27.3 254 144-429 105-373 (377)
270 KOG3914 WD repeat protein WDR4 99.0 9.2E-09 2E-13 94.9 15.6 158 200-360 73-232 (390)
271 KOG2315 Predicted translation 99.0 7.8E-08 1.7E-12 92.3 22.1 213 201-426 136-375 (566)
272 PF04762 IKI3: IKI3 family; I 99.0 2.4E-07 5.1E-12 99.3 28.4 199 239-446 78-341 (928)
273 TIGR02658 TTQ_MADH_Hv methylam 99.0 1.1E-06 2.4E-11 83.4 29.2 263 115-402 28-339 (352)
274 PF08450 SGL: SMP-30/Gluconola 99.0 2E-06 4.4E-11 78.8 30.3 212 200-424 11-244 (246)
275 KOG1354 Serine/threonine prote 99.0 3.6E-08 7.9E-13 89.1 17.1 220 192-426 165-426 (433)
276 TIGR03300 assembly_YfgL outer 99.0 7.8E-07 1.7E-11 87.1 27.3 252 144-428 65-331 (377)
277 KOG2066 Vacuolar assembly/sort 99.0 4.6E-08 9.9E-13 97.7 18.3 216 191-429 39-282 (846)
278 KOG2041 WD40 repeat protein [G 99.0 1.9E-08 4.2E-13 98.7 15.4 230 192-427 15-280 (1189)
279 COG5354 Uncharacterized protei 98.9 4.4E-07 9.4E-12 86.3 22.8 203 207-427 198-421 (561)
280 COG5354 Uncharacterized protei 98.9 8.5E-07 1.9E-11 84.4 24.4 284 132-443 32-353 (561)
281 KOG3914 WD repeat protein WDR4 98.9 2.8E-08 6E-13 91.7 13.9 152 245-400 71-230 (390)
282 KOG1409 Uncharacterized conser 98.9 2E-07 4.3E-12 84.5 18.7 233 141-394 33-271 (404)
283 PF08450 SGL: SMP-30/Gluconola 98.9 1.6E-05 3.4E-10 72.9 32.0 217 138-382 5-244 (246)
284 KOG4190 Uncharacterized conser 98.9 1.5E-08 3.2E-13 96.8 11.2 202 193-401 737-956 (1034)
285 PF13360 PQQ_2: PQQ-like domai 98.9 1E-05 2.2E-10 73.7 29.4 219 152-400 2-237 (238)
286 KOG4190 Uncharacterized conser 98.8 3.6E-08 7.8E-13 94.2 11.0 266 141-429 744-1030(1034)
287 KOG0309 Conserved WD40 repeat- 98.8 6.6E-08 1.4E-12 95.4 13.0 266 138-417 30-311 (1081)
288 KOG1275 PAB-dependent poly(A) 98.8 1.6E-07 3.5E-12 94.9 15.9 181 200-391 146-340 (1118)
289 PF11768 DUF3312: Protein of u 98.8 3E-05 6.4E-10 76.0 30.5 139 275-417 202-369 (545)
290 KOG2041 WD40 repeat protein [G 98.8 1.4E-06 3.1E-11 86.0 21.0 282 132-424 14-327 (1189)
291 KOG4714 Nucleoporin [Nuclear s 98.8 3.5E-08 7.6E-13 86.1 8.9 195 193-394 38-255 (319)
292 KOG1409 Uncharacterized conser 98.8 2.8E-07 6E-12 83.6 14.7 177 251-428 38-263 (404)
293 KOG1275 PAB-dependent poly(A) 98.7 2.2E-07 4.7E-12 94.0 15.0 179 249-433 147-340 (1118)
294 PF04762 IKI3: IKI3 family; I 98.7 1.4E-05 3E-10 85.9 29.0 226 192-429 76-373 (928)
295 KOG2314 Translation initiation 98.7 9.6E-07 2.1E-11 84.8 17.8 182 236-424 212-412 (698)
296 KOG2695 WD40 repeat protein [G 98.7 6.1E-08 1.3E-12 87.8 9.0 159 253-414 228-401 (425)
297 PF00400 WD40: WD domain, G-be 98.7 5.8E-08 1.3E-12 61.1 6.0 39 310-348 1-39 (39)
298 PF15492 Nbas_N: Neuroblastoma 98.7 4.5E-05 9.7E-10 68.2 25.7 239 139-400 4-266 (282)
299 KOG0309 Conserved WD40 repeat- 98.7 4.2E-07 9E-12 90.0 13.9 222 197-421 32-261 (1081)
300 PF13360 PQQ_2: PQQ-like domai 98.7 1.2E-05 2.6E-10 73.1 22.8 214 210-438 2-230 (238)
301 PF07433 DUF1513: Protein of u 98.6 3.4E-05 7.5E-10 70.9 24.7 179 245-424 13-235 (305)
302 KOG2114 Vacuolar assembly/sort 98.6 1.7E-05 3.7E-10 80.3 24.4 206 193-405 27-256 (933)
303 KOG4714 Nucleoporin [Nuclear s 98.6 3.7E-07 8E-12 79.8 10.7 152 194-350 94-254 (319)
304 KOG2066 Vacuolar assembly/sort 98.6 1.4E-06 3E-11 87.4 15.9 163 249-424 49-223 (846)
305 PRK11138 outer membrane biogen 98.6 5.1E-05 1.1E-09 74.7 27.2 252 144-428 120-387 (394)
306 KOG4532 WD40-like repeat conta 98.6 3.1E-06 6.7E-11 74.5 16.0 166 251-417 86-262 (344)
307 PF00400 WD40: WD domain, G-be 98.6 1.7E-07 3.6E-12 59.0 6.0 38 354-391 2-39 (39)
308 PF07433 DUF1513: Protein of u 98.6 8.2E-05 1.8E-09 68.4 25.5 175 244-424 58-275 (305)
309 KOG0882 Cyclophilin-related pe 98.6 5.4E-07 1.2E-11 84.5 11.1 200 194-398 12-236 (558)
310 KOG1920 IkappaB kinase complex 98.5 1.6E-05 3.5E-10 83.4 21.5 198 245-446 77-330 (1265)
311 PF11768 DUF3312: Protein of u 98.5 1.4E-05 3.1E-10 78.1 19.9 88 262-351 239-330 (545)
312 COG0823 TolB Periplasmic compo 98.5 3.8E-06 8.1E-11 82.4 15.8 179 245-425 201-389 (425)
313 KOG1832 HIV-1 Vpr-binding prot 98.5 1E-07 2.3E-12 95.8 4.9 209 193-423 1103-1319(1516)
314 KOG1912 WD40 repeat protein [G 98.5 5.7E-05 1.2E-09 75.8 22.6 231 142-394 24-305 (1062)
315 PRK11138 outer membrane biogen 98.5 0.00017 3.7E-09 71.0 26.5 191 197-400 116-319 (394)
316 KOG2695 WD40 repeat protein [G 98.4 1.2E-06 2.7E-11 79.5 8.8 153 200-362 224-387 (425)
317 COG3391 Uncharacterized conser 98.4 0.0022 4.9E-08 62.6 32.3 178 245-425 82-272 (381)
318 COG5170 CDC55 Serine/threonine 98.4 4.7E-06 1E-10 74.8 11.9 194 193-391 87-365 (460)
319 PRK02888 nitrous-oxide reducta 98.4 4.8E-05 1E-09 76.3 19.5 166 256-423 212-449 (635)
320 KOG0882 Cyclophilin-related pe 98.4 3.4E-06 7.4E-11 79.2 10.6 186 246-433 17-229 (558)
321 PF03178 CPSF_A: CPSF A subuni 98.3 0.00015 3.2E-09 69.4 21.9 220 212-438 3-268 (321)
322 PF15492 Nbas_N: Neuroblastoma 98.3 0.00043 9.4E-09 62.0 22.7 206 129-360 40-268 (282)
323 KOG1008 Uncharacterized conser 98.3 2.7E-07 5.9E-12 90.0 1.3 195 194-394 59-276 (783)
324 COG0823 TolB Periplasmic compo 98.2 5.1E-05 1.1E-09 74.5 16.5 146 277-426 191-346 (425)
325 KOG1920 IkappaB kinase complex 98.2 0.00064 1.4E-08 71.9 24.2 196 192-395 69-324 (1265)
326 KOG1912 WD40 repeat protein [G 98.2 0.00042 9.1E-09 69.8 21.7 232 194-429 18-298 (1062)
327 COG3386 Gluconolactonase [Carb 98.2 0.0018 3.8E-08 60.8 24.6 213 203-427 39-277 (307)
328 PF08553 VID27: VID27 cytoplas 98.1 0.00034 7.3E-09 72.9 20.5 139 251-392 496-646 (794)
329 KOG1645 RING-finger-containing 98.1 2.1E-05 4.6E-10 73.1 10.1 158 261-421 175-346 (463)
330 KOG2114 Vacuolar assembly/sort 98.1 0.00026 5.5E-09 72.1 17.9 178 245-424 32-233 (933)
331 cd00216 PQQ_DH Dehydrogenases 98.1 0.0078 1.7E-07 61.0 28.7 258 145-428 111-459 (488)
332 KOG1832 HIV-1 Vpr-binding prot 98.0 4.7E-06 1E-10 84.4 4.5 147 271-421 1093-1246(1516)
333 PF06977 SdiA-regulated: SdiA- 98.0 0.0067 1.5E-07 55.0 23.8 183 237-424 24-239 (248)
334 PF06433 Me-amine-dh_H: Methyl 98.0 0.0058 1.3E-07 57.2 23.0 268 115-403 18-330 (342)
335 KOG1008 Uncharacterized conser 98.0 2.2E-06 4.8E-11 83.9 0.7 176 250-428 71-267 (783)
336 cd00216 PQQ_DH Dehydrogenases 97.9 0.02 4.2E-07 58.1 28.4 263 144-428 61-417 (488)
337 KOG4649 PQQ (pyrrolo-quinoline 97.9 0.0061 1.3E-07 54.1 20.9 139 201-347 23-162 (354)
338 KOG4649 PQQ (pyrrolo-quinoline 97.9 0.0012 2.7E-08 58.3 16.7 140 246-387 20-159 (354)
339 PF08596 Lgl_C: Lethal giant l 97.9 0.004 8.7E-08 60.7 21.7 226 193-423 3-324 (395)
340 PRK02888 nitrous-oxide reducta 97.9 0.0025 5.4E-08 64.3 20.3 133 246-382 286-450 (635)
341 COG3386 Gluconolactonase [Carb 97.8 0.016 3.5E-07 54.4 24.5 218 139-383 31-275 (307)
342 PF03178 CPSF_A: CPSF A subuni 97.8 0.029 6.3E-07 53.5 26.2 184 201-390 42-262 (321)
343 PF00930 DPPIV_N: Dipeptidyl p 97.8 0.0026 5.6E-08 61.6 19.0 178 258-437 22-267 (353)
344 COG3391 Uncharacterized conser 97.8 0.025 5.4E-07 55.3 25.9 211 201-418 86-311 (381)
345 KOG3621 WD40 repeat-containing 97.8 0.0003 6.6E-09 70.2 12.0 138 277-414 32-179 (726)
346 KOG4640 Anaphase-promoting com 97.7 0.00016 3.5E-09 71.2 9.7 96 277-373 19-115 (665)
347 KOG2395 Protein involved in va 97.7 0.0016 3.4E-08 63.2 15.8 143 247-392 344-499 (644)
348 PF00930 DPPIV_N: Dipeptidyl p 97.7 0.052 1.1E-06 52.6 28.6 253 153-426 23-348 (353)
349 PF08553 VID27: VID27 cytoplas 97.7 0.00083 1.8E-08 70.1 14.8 123 298-424 502-637 (794)
350 PF04053 Coatomer_WDAD: Coatom 97.7 0.03 6.4E-07 55.5 24.7 216 135-394 35-263 (443)
351 PF04053 Coatomer_WDAD: Coatom 97.7 0.022 4.8E-07 56.4 23.8 204 195-426 36-253 (443)
352 KOG3617 WD40 and TPR repeat-co 97.6 9.5E-05 2.1E-09 74.9 6.4 110 281-393 18-131 (1416)
353 PF04841 Vps16_N: Vps16, N-ter 97.6 0.039 8.4E-07 54.5 24.3 189 212-416 62-270 (410)
354 PF02897 Peptidase_S9_N: Proly 97.6 0.079 1.7E-06 52.5 26.8 196 242-438 129-357 (414)
355 COG3490 Uncharacterized protei 97.6 0.018 3.8E-07 52.0 18.9 173 245-427 44-247 (366)
356 PHA02713 hypothetical protein; 97.6 0.0038 8.3E-08 64.1 17.3 196 197-404 300-544 (557)
357 smart00320 WD40 WD40 repeats. 97.6 0.00026 5.6E-09 42.8 5.6 39 310-348 2-40 (40)
358 PF02897 Peptidase_S9_N: Proly 97.5 0.02 4.3E-07 56.8 21.1 155 282-438 127-309 (414)
359 PF04841 Vps16_N: Vps16, N-ter 97.5 0.12 2.7E-06 51.0 30.6 188 193-391 82-285 (410)
360 PF14783 BBS2_Mid: Ciliary BBS 97.5 0.018 4E-07 44.6 15.8 102 238-345 3-109 (111)
361 KOG4640 Anaphase-promoting com 97.5 0.00064 1.4E-08 67.1 9.8 93 321-415 21-115 (665)
362 PF14583 Pectate_lyase22: Olig 97.5 0.11 2.4E-06 49.8 33.0 265 139-427 42-372 (386)
363 KOG1645 RING-finger-containing 97.5 0.00044 9.5E-09 64.6 7.9 94 302-397 175-270 (463)
364 KOG3621 WD40 repeat-containing 97.4 0.00069 1.5E-08 67.7 8.7 111 319-429 32-148 (726)
365 PRK13616 lipoprotein LpqB; Pro 97.4 0.0088 1.9E-07 61.5 17.1 141 279-425 350-515 (591)
366 PF05096 Glu_cyclase_2: Glutam 97.4 0.1 2.2E-06 47.4 23.4 189 227-424 37-249 (264)
367 KOG2395 Protein involved in va 97.4 0.0026 5.7E-08 61.7 12.0 133 289-424 344-490 (644)
368 smart00320 WD40 WD40 repeats. 97.4 0.00059 1.3E-08 41.1 5.4 38 354-391 3-40 (40)
369 PF08596 Lgl_C: Lethal giant l 97.3 0.03 6.5E-07 54.7 19.2 193 191-384 86-327 (395)
370 PF14870 PSII_BNR: Photosynthe 97.3 0.16 3.4E-06 47.7 27.1 152 277-435 143-301 (302)
371 KOG3617 WD40 and TPR repeat-co 97.3 0.00058 1.3E-08 69.4 6.7 104 245-350 24-131 (1416)
372 PF14783 BBS2_Mid: Ciliary BBS 97.2 0.039 8.4E-07 42.8 14.9 100 281-388 2-109 (111)
373 PF10647 Gmad1: Lipoprotein Lp 97.2 0.046 9.9E-07 50.2 18.2 145 280-427 25-187 (253)
374 PF05694 SBP56: 56kDa selenium 97.2 0.26 5.7E-06 47.7 24.9 223 200-423 86-391 (461)
375 PF00780 CNH: CNH domain; Int 97.1 0.21 4.6E-06 46.3 27.2 226 199-444 5-271 (275)
376 PF06977 SdiA-regulated: SdiA- 97.1 0.19 4.1E-06 45.7 21.9 189 193-390 23-247 (248)
377 PRK13616 lipoprotein LpqB; Pro 97.1 0.046 1E-06 56.3 19.0 179 237-426 352-559 (591)
378 PF00780 CNH: CNH domain; Int 97.1 0.23 5.1E-06 46.0 28.7 228 141-402 4-264 (275)
379 PF06433 Me-amine-dh_H: Methyl 97.1 0.26 5.6E-06 46.4 27.7 222 197-423 43-306 (342)
380 PF15390 DUF4613: Domain of un 97.1 0.075 1.6E-06 52.8 18.6 120 271-393 52-186 (671)
381 TIGR03074 PQQ_membr_DH membran 97.1 0.32 7E-06 51.7 24.8 199 201-400 194-484 (764)
382 PF10313 DUF2415: Uncharacteri 96.9 0.0046 9.9E-08 38.8 5.8 38 364-401 1-41 (43)
383 KOG4441 Proteins containing BT 96.9 0.068 1.5E-06 55.0 17.6 218 200-428 284-534 (571)
384 PHA02713 hypothetical protein; 96.8 0.038 8.2E-07 56.9 15.4 149 194-351 345-534 (557)
385 KOG4441 Proteins containing BT 96.8 0.1 2.2E-06 53.8 18.1 193 194-396 326-549 (571)
386 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.8 0.82 1.8E-05 46.8 29.6 54 260-313 272-338 (527)
387 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.8 0.56 1.2E-05 48.0 23.1 193 200-398 68-338 (527)
388 TIGR02604 Piru_Ver_Nterm putat 96.7 0.13 2.9E-06 50.0 17.5 145 279-426 14-204 (367)
389 PF14583 Pectate_lyase22: Olig 96.7 0.37 8.1E-06 46.2 19.6 137 245-383 44-207 (386)
390 KOG2079 Vacuolar assembly/sort 96.7 0.0067 1.4E-07 63.7 8.3 100 289-391 98-201 (1206)
391 PF05694 SBP56: 56kDa selenium 96.6 0.81 1.8E-05 44.5 21.7 180 200-382 140-392 (461)
392 COG5276 Uncharacterized conser 96.6 0.59 1.3E-05 42.7 28.4 260 142-427 94-361 (370)
393 KOG2444 WD40 repeat protein [G 96.5 0.0059 1.3E-07 53.3 5.9 140 251-394 32-178 (238)
394 KOG2079 Vacuolar assembly/sort 96.5 0.0086 1.9E-07 62.9 8.1 97 251-349 101-202 (1206)
395 COG5167 VID27 Protein involved 96.5 0.072 1.6E-06 52.0 13.6 144 246-393 477-632 (776)
396 KOG4499 Ca2+-binding protein R 96.5 0.55 1.2E-05 41.5 18.3 218 200-423 26-272 (310)
397 PF12894 Apc4_WD40: Anaphase-p 96.5 0.012 2.6E-07 38.1 5.7 36 276-312 9-44 (47)
398 PHA03098 kelch-like protein; P 96.4 0.18 3.9E-06 51.9 17.0 191 195-396 289-514 (534)
399 KOG3630 Nuclear pore complex, 96.3 0.071 1.5E-06 56.7 13.0 144 278-423 100-261 (1405)
400 COG3204 Uncharacterized protei 96.2 0.3 6.6E-06 44.6 15.2 157 278-437 85-262 (316)
401 PF10647 Gmad1: Lipoprotein Lp 96.2 1 2.2E-05 41.3 21.7 141 245-385 32-187 (253)
402 PF12894 Apc4_WD40: Anaphase-p 96.2 0.022 4.7E-07 36.9 5.7 34 363-397 11-44 (47)
403 PF08728 CRT10: CRT10; InterP 96.2 0.15 3.2E-06 52.9 14.5 174 130-307 34-245 (717)
404 PF14655 RAB3GAP2_N: Rab3 GTPa 96.1 1.6 3.4E-05 42.9 22.7 81 321-402 308-407 (415)
405 PHA03098 kelch-like protein; P 96.0 0.47 1E-05 48.8 17.9 149 195-351 337-512 (534)
406 PF14870 PSII_BNR: Photosynthe 95.9 1.5 3.2E-05 41.2 22.8 182 198-390 111-301 (302)
407 PRK10115 protease 2; Provision 95.9 1.3 2.7E-05 47.1 20.7 110 281-392 129-254 (686)
408 PF12234 Rav1p_C: RAVE protein 95.7 0.52 1.1E-05 48.5 15.9 97 251-349 43-155 (631)
409 PF05096 Glu_cyclase_2: Glutam 95.6 1.7 3.7E-05 39.6 23.8 178 195-382 48-249 (264)
410 PF15390 DUF4613: Domain of un 95.6 0.5 1.1E-05 47.2 14.8 138 279-424 20-174 (671)
411 KOG2444 WD40 repeat protein [G 95.6 0.044 9.6E-07 47.9 6.7 141 203-351 32-178 (238)
412 PHA02790 Kelch-like protein; P 95.5 0.85 1.8E-05 46.2 17.1 143 196-350 314-470 (480)
413 TIGR02604 Piru_Ver_Nterm putat 95.2 1.4 3.1E-05 42.8 16.9 141 236-382 13-202 (367)
414 PHA02790 Kelch-like protein; P 95.2 0.92 2E-05 45.9 16.0 184 199-395 270-472 (480)
415 COG3490 Uncharacterized protei 95.1 1.2 2.5E-05 40.7 14.3 136 245-381 76-243 (366)
416 KOG4499 Ca2+-binding protein R 95.0 0.87 1.9E-05 40.3 12.9 114 210-330 138-263 (310)
417 PLN02153 epithiospecifier prot 95.0 3.6 7.7E-05 39.6 21.2 113 195-312 27-171 (341)
418 PF03022 MRJP: Major royal jel 95.0 3.2 6.9E-05 38.8 19.9 163 260-423 35-253 (287)
419 PRK10115 protease 2; Provision 94.9 6.4 0.00014 41.8 26.3 189 244-436 134-344 (686)
420 PF10168 Nup88: Nuclear pore c 94.8 0.8 1.7E-05 48.4 14.6 26 279-304 85-110 (717)
421 PF12234 Rav1p_C: RAVE protein 94.8 1.8 3.9E-05 44.6 16.6 111 280-392 31-155 (631)
422 PRK13684 Ycf48-like protein; P 94.6 4.5 9.7E-05 38.8 28.7 151 278-437 172-330 (334)
423 KOG2377 Uncharacterized conser 94.5 1.2 2.7E-05 43.1 13.7 104 277-382 65-172 (657)
424 COG3823 Glutamine cyclotransfe 94.4 1.5 3.2E-05 38.1 12.7 173 200-381 55-247 (262)
425 COG5167 VID27 Protein involved 94.2 0.58 1.3E-05 45.9 11.0 134 289-425 478-623 (776)
426 KOG1897 Damage-specific DNA bi 94.1 9.9 0.00022 40.7 26.7 229 192-424 531-794 (1096)
427 KOG1916 Nuclear protein, conta 94.0 0.1 2.2E-06 54.3 5.8 139 259-398 153-328 (1283)
428 KOG1897 Damage-specific DNA bi 93.9 11 0.00023 40.6 30.5 146 275-424 711-887 (1096)
429 KOG2247 WD40 repeat-containing 93.6 0.011 2.4E-07 57.1 -1.6 136 283-421 39-175 (615)
430 TIGR03547 muta_rot_YjhT mutatr 93.6 7.3 0.00016 37.4 23.7 41 386-427 291-332 (346)
431 PF12657 TFIIIC_delta: Transcr 93.3 0.64 1.4E-05 39.9 8.9 31 364-394 86-122 (173)
432 PLN02193 nitrile-specifier pro 93.2 11 0.00023 38.2 19.0 192 196-397 171-414 (470)
433 COG5276 Uncharacterized conser 93.0 7.4 0.00016 35.9 21.9 140 251-396 98-244 (370)
434 PF11635 Med16: Mediator compl 93.0 15 0.00033 39.4 22.7 74 364-437 260-352 (753)
435 KOG3630 Nuclear pore complex, 92.9 1.3 2.8E-05 47.7 11.7 100 237-337 156-260 (1405)
436 KOG4659 Uncharacterized conser 92.8 19 0.0004 40.1 22.2 28 403-430 659-686 (1899)
437 PF10313 DUF2415: Uncharacteri 92.8 0.54 1.2E-05 29.6 5.5 32 279-310 1-35 (43)
438 TIGR03074 PQQ_membr_DH membran 92.5 17 0.00037 39.0 21.8 106 251-358 196-351 (764)
439 COG3204 Uncharacterized protei 92.5 8.7 0.00019 35.4 21.4 182 237-422 88-300 (316)
440 PF13449 Phytase-like: Esteras 92.4 10 0.00023 36.1 17.2 142 279-422 20-231 (326)
441 COG3823 Glutamine cyclotransfe 92.4 7.1 0.00015 34.1 16.0 186 231-424 42-247 (262)
442 PF07995 GSDH: Glucose / Sorbo 92.2 11 0.00024 36.0 18.0 100 281-382 4-132 (331)
443 KOG2247 WD40 repeat-containing 92.1 0.024 5.1E-07 54.9 -1.7 140 235-380 33-176 (615)
444 PF02333 Phytase: Phytase; In 91.8 13 0.00028 36.0 23.8 147 211-358 127-298 (381)
445 PLN00033 photosystem II stabil 90.9 17 0.00038 35.7 26.8 144 281-435 241-396 (398)
446 PF07250 Glyoxal_oxid_N: Glyox 90.8 5.5 0.00012 36.1 12.0 143 261-406 48-210 (243)
447 PF14655 RAB3GAP2_N: Rab3 GTPa 90.7 3.8 8.2E-05 40.3 11.8 81 277-360 306-407 (415)
448 PF07995 GSDH: Glucose / Sorbo 90.7 16 0.00035 35.0 24.0 73 355-428 245-328 (331)
449 TIGR03548 mutarot_permut cycli 90.6 16 0.00035 34.7 17.8 114 195-312 67-198 (323)
450 TIGR02276 beta_rpt_yvtn 40-res 90.4 1.7 3.6E-05 26.9 6.3 41 246-286 1-41 (42)
451 KOG4460 Nuclear pore complex, 90.2 5.2 0.00011 39.7 11.9 81 322-402 105-207 (741)
452 PRK13684 Ycf48-like protein; P 90.2 18 0.00038 34.7 20.7 147 236-391 174-329 (334)
453 PF08728 CRT10: CRT10; InterP 89.9 6 0.00013 41.4 12.8 114 278-392 100-245 (717)
454 TIGR02276 beta_rpt_yvtn 40-res 89.8 2 4.4E-05 26.5 6.2 41 373-414 1-42 (42)
455 PF14781 BBS2_N: Ciliary BBSom 89.2 10 0.00023 30.6 11.5 112 202-315 11-132 (136)
456 PF14761 HPS3_N: Hermansky-Pud 89.2 15 0.00033 32.4 14.0 103 291-395 29-165 (215)
457 TIGR03548 mutarot_permut cycli 89.0 21 0.00046 33.9 17.5 99 196-299 119-233 (323)
458 PF10395 Utp8: Utp8 family; I 89.0 32 0.00069 35.9 20.8 178 221-401 58-267 (670)
459 PF07569 Hira: TUP1-like enhan 88.8 2.5 5.5E-05 37.7 8.3 67 328-395 18-97 (219)
460 PF14727 PHTB1_N: PTHB1 N-term 88.8 26 0.00057 34.6 25.8 148 201-350 37-204 (418)
461 PF05935 Arylsulfotrans: Aryls 87.8 32 0.0007 34.8 16.5 143 257-403 126-311 (477)
462 KOG2377 Uncharacterized conser 87.1 14 0.0003 36.3 12.3 104 319-424 65-172 (657)
463 PF11715 Nup160: Nucleoporin N 86.7 5.1 0.00011 41.3 10.3 77 200-276 157-257 (547)
464 TIGR03606 non_repeat_PQQ dehyd 86.7 27 0.00059 34.9 14.7 60 316-375 25-90 (454)
465 PF07676 PD40: WD40-like Beta 86.7 3 6.4E-05 25.4 5.4 33 358-390 3-38 (39)
466 PF03022 MRJP: Major royal jel 86.6 28 0.0006 32.5 19.8 170 212-381 35-253 (287)
467 TIGR02171 Fb_sc_TIGR02171 Fibr 86.3 5.6 0.00012 42.5 10.1 90 290-379 319-414 (912)
468 TIGR03547 muta_rot_YjhT mutatr 86.1 33 0.00071 32.9 22.2 29 195-223 58-97 (346)
469 PLN00033 photosystem II stabil 86.0 37 0.0008 33.4 15.6 108 277-390 279-396 (398)
470 PF10168 Nup88: Nuclear pore c 85.6 55 0.0012 35.0 22.7 34 278-311 146-182 (717)
471 PF13449 Phytase-like: Esteras 85.5 18 0.00039 34.5 12.7 103 320-423 19-164 (326)
472 KOG1916 Nuclear protein, conta 85.3 1.5 3.3E-05 46.1 5.4 100 251-351 197-324 (1283)
473 KOG1520 Predicted alkaloid syn 85.2 35 0.00076 32.8 13.9 142 279-423 115-282 (376)
474 PLN02193 nitrile-specifier pro 84.9 44 0.00095 33.8 15.7 116 195-313 223-356 (470)
475 PF07569 Hira: TUP1-like enhan 84.7 8.3 0.00018 34.4 9.3 78 193-274 14-102 (219)
476 PF12768 Rax2: Cortical protei 84.7 22 0.00048 33.0 12.3 93 300-394 16-124 (281)
477 PRK13615 lipoprotein LpqB; Pro 84.4 45 0.00097 34.4 15.3 138 282-423 337-487 (557)
478 PLN02153 epithiospecifier prot 84.1 40 0.00088 32.2 21.5 115 194-313 79-230 (341)
479 KOG1898 Splicing factor 3b, su 83.3 76 0.0016 34.8 17.4 229 191-427 539-795 (1205)
480 KOG1900 Nuclear pore complex, 82.9 16 0.00034 40.6 11.8 136 256-394 96-273 (1311)
481 KOG4460 Nuclear pore complex, 82.7 10 0.00022 37.8 9.4 72 280-351 105-199 (741)
482 PF07676 PD40: WD40-like Beta 82.6 5.4 0.00012 24.2 5.2 30 318-347 6-38 (39)
483 TIGR03118 PEPCTERM_chp_1 conse 82.2 44 0.00095 31.3 24.4 170 202-373 101-307 (336)
484 PF11715 Nup160: Nucleoporin N 81.8 9.2 0.0002 39.5 9.7 36 365-400 216-255 (547)
485 PF07250 Glyoxal_oxid_N: Glyox 81.5 21 0.00046 32.3 10.6 125 301-426 47-190 (243)
486 TIGR03606 non_repeat_PQQ dehyd 81.3 62 0.0013 32.4 22.3 54 279-332 30-90 (454)
487 PRK14131 N-acetylneuraminic ac 81.2 56 0.0012 31.8 23.1 40 260-299 107-149 (376)
488 COG1506 DAP2 Dipeptidyl aminop 80.9 69 0.0015 33.7 15.8 148 274-427 55-237 (620)
489 COG4590 ABC-type uncharacteriz 80.7 10 0.00022 37.1 8.6 148 197-351 228-387 (733)
490 KOG2280 Vacuolar assembly/sort 79.9 30 0.00065 36.2 11.9 100 279-396 217-317 (829)
491 PRK14131 N-acetylneuraminic ac 79.9 62 0.0013 31.5 22.1 28 195-222 79-117 (376)
492 PF03088 Str_synth: Strictosid 79.8 11 0.00024 28.2 6.9 65 282-347 1-85 (89)
493 PF10214 Rrn6: RNA polymerase 79.1 1E+02 0.0022 33.5 22.4 208 216-424 1-267 (765)
494 PRK13614 lipoprotein LpqB; Pro 79.0 78 0.0017 32.8 14.9 141 280-424 344-504 (573)
495 COG3292 Predicted periplasmic 78.6 81 0.0018 32.1 16.1 220 192-420 247-478 (671)
496 KOG2280 Vacuolar assembly/sort 78.1 96 0.0021 32.7 19.1 173 193-375 85-271 (829)
497 PF14781 BBS2_N: Ciliary BBSom 77.2 37 0.00081 27.5 13.4 107 284-394 4-126 (136)
498 PF14761 HPS3_N: Hermansky-Pud 76.6 11 0.00023 33.2 6.9 53 376-428 29-82 (215)
499 PF14269 Arylsulfotran_2: Aryl 75.5 73 0.0016 30.0 17.9 70 281-350 146-220 (299)
500 COG4590 ABC-type uncharacteriz 74.6 13 0.00028 36.4 7.3 159 135-312 223-390 (733)
No 1
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=5.7e-41 Score=304.13 Aligned_cols=264 Identities=23% Similarity=0.325 Sum_probs=232.9
Q ss_pred CCCCeEEEec-CCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe----cCCEEEEEeCCCeEEEE
Q 013184 142 TSKHDVYLMS-HFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV----RDNLLIAGGFQGELICK 216 (448)
Q Consensus 142 ~~~~~v~~~~-~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~----~~~~lvsg~~dg~i~vw 216 (448)
.....+.+++ .+.+++|+..+. ..+..+.||.. .|.++.| ++..|++|+.||++++|
T Consensus 185 ~ds~~laT~swsG~~kvW~~~~~--~~~~~l~gH~~----------------~v~~~~fhP~~~~~~lat~s~Dgtvklw 246 (459)
T KOG0272|consen 185 RDSKHLATGSWSGLVKVWSVPQC--NLLQTLRGHTS----------------RVGAAVFHPVDSDLNLATASADGTVKLW 246 (459)
T ss_pred cCCCeEEEeecCCceeEeecCCc--ceeEEEecccc----------------ceeeEEEccCCCccceeeeccCCceeee
Confidence 4444555554 788999998665 66667788886 4777777 36689999999999999
Q ss_pred EcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee-cCCCeeEEEECCCCCEEEE
Q 013184 217 YLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS-FPWPVNHTSLSPDGKLLVI 295 (448)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~ 295 (448)
.+++.... ..+. +|..-+..+. |+|+|. +|.+++.|.+-++||+++++.+...+ |...|.+++|+|+|.++++
T Consensus 247 ~~~~e~~l--~~l~-gH~~RVs~Va--fHPsG~-~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~t 320 (459)
T KOG0272|consen 247 KLSQETPL--QDLE-GHLARVSRVA--FHPSGK-FLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAAT 320 (459)
T ss_pred ccCCCcch--hhhh-cchhhheeee--ecCCCc-eeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeec
Confidence 99886532 2233 4444444554 499997 99999999999999999988777666 9999999999999999999
Q ss_pred EecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEEEEcC-C
Q 013184 296 VGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTS-D 374 (448)
Q Consensus 296 ~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp-~ 374 (448)
||.|..-+|||+++|+++..|.+|...|.+|+|+|+|..||||+.|++++|||+|. ..++..+.+|..-|+.++|+| .
T Consensus 321 GGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~-r~~ly~ipAH~nlVS~Vk~~p~~ 399 (459)
T KOG0272|consen 321 GGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRM-RSELYTIPAHSNLVSQVKYSPQE 399 (459)
T ss_pred cCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecc-cccceecccccchhhheEecccC
Confidence 99999999999999999999999999999999999999999999999999999997 777999999999999999999 7
Q ss_pred CCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEecCCcc
Q 013184 375 GNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDRTYG 430 (448)
Q Consensus 375 g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~~~ 430 (448)
|.+|++++.|++++||...++.++..+.+|.+.|.++.++|||++++++++|++++
T Consensus 400 g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~K 455 (459)
T KOG0272|consen 400 GYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIK 455 (459)
T ss_pred CeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceee
Confidence 89999999999999999999999999999999999999999999999999998864
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.9e-38 Score=286.55 Aligned_cols=232 Identities=22% Similarity=0.313 Sum_probs=211.2
Q ss_pred eeEEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCC-CCeeEEEEeCCCcEEEEecCCc
Q 013184 193 QVSTLAV--RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPS-GGIHFMASNNDCGVRDFDMERF 269 (448)
Q Consensus 193 ~i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~s~dg~v~iwd~~~~ 269 (448)
+|+.+.+ +++.||+|+.+|.+++|+...... .....+|...+.++.| +|. ....+++|+.||++++|++.+.
T Consensus 177 Pis~~~fS~ds~~laT~swsG~~kvW~~~~~~~---~~~l~gH~~~v~~~~f--hP~~~~~~lat~s~Dgtvklw~~~~e 251 (459)
T KOG0272|consen 177 PISGCSFSRDSKHLATGSWSGLVKVWSVPQCNL---LQTLRGHTSRVGAAVF--HPVDSDLNLATASADGTVKLWKLSQE 251 (459)
T ss_pred cceeeEeecCCCeEEEeecCCceeEeecCCcce---eEEEeccccceeeEEE--ccCCCccceeeeccCCceeeeccCCC
Confidence 3555555 999999999999999999877632 3344566666667766 776 3558999999999999999998
Q ss_pred eEEEEee-cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 013184 270 QLSKHFS-FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWD 348 (448)
Q Consensus 270 ~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd 348 (448)
.++..+. |...|..++|+|+|++|++++.|.+-++||+++++.+....||...|++++|+|||.+++||+.|..-||||
T Consensus 252 ~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWD 331 (459)
T KOG0272|consen 252 TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWD 331 (459)
T ss_pred cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheee
Confidence 8888888 899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEcc-CCCeEEEEEecC
Q 013184 349 VRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSP-DTEALFIGVWDR 427 (448)
Q Consensus 349 ~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fsp-dg~~L~~~~~D~ 427 (448)
+|+ +.++..+.+|..+|.++.|+|+|..||+|+.|++++|||++....+.++.+|...|+.+.|+| .|.+|+++++|.
T Consensus 332 lRt-gr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~ 410 (459)
T KOG0272|consen 332 LRT-GRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDN 410 (459)
T ss_pred ccc-CcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCc
Confidence 998 899999999999999999999999999999999999999999999999999999999999999 789999999998
Q ss_pred Ccc
Q 013184 428 TYG 430 (448)
Q Consensus 428 ~~~ 430 (448)
+++
T Consensus 411 t~k 413 (459)
T KOG0272|consen 411 TVK 413 (459)
T ss_pred cee
Confidence 864
No 3
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=7.5e-36 Score=259.23 Aligned_cols=270 Identities=24% Similarity=0.359 Sum_probs=234.8
Q ss_pred eeeeCCCCeEEEe-cCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCCCeEE
Q 013184 138 LVWSTSKHDVYLM-SHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQGELI 214 (448)
Q Consensus 138 l~~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~dg~i~ 214 (448)
+-|++.+..+..+ .++.+.+||..|.+....+.++ ..-|.+.++ .++++++||.|....
T Consensus 61 ~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~------------------s~WVMtCA~sPSg~~VAcGGLdN~Cs 122 (343)
T KOG0286|consen 61 MDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLP------------------SSWVMTCAYSPSGNFVACGGLDNKCS 122 (343)
T ss_pred eEecCCcCeEEeeccCCeEEEEEcccccceeEEecC------------------ceeEEEEEECCCCCeEEecCcCceeE
Confidence 3488888777776 5888999999988777777554 124666666 899999999999999
Q ss_pred EEEcCCCC---ceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee-cCCCeeEEEECC-C
Q 013184 215 CKYLDQPG---VSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS-FPWPVNHTSLSP-D 289 (448)
Q Consensus 215 vw~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp-~ 289 (448)
||++.... .....+....|.+...+..+ .++ . +|+++|.|.+.-+||+++++.+..|. |.+.|.+++++| +
T Consensus 123 iy~ls~~d~~g~~~v~r~l~gHtgylScC~f--~dD-~-~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~ 198 (343)
T KOG0286|consen 123 IYPLSTRDAEGNVRVSRELAGHTGYLSCCRF--LDD-N-HILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSD 198 (343)
T ss_pred EEecccccccccceeeeeecCccceeEEEEE--cCC-C-ceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCC
Confidence 99998652 22334455566677767666 333 3 79999999999999999999999998 999999999999 9
Q ss_pred CCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEcc--CCCCeE
Q 013184 290 GKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKG--NLGAIR 367 (448)
Q Consensus 290 ~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~~~~v~ 367 (448)
++.+++|+-|+..+|||++.+.++++|.+|...|.++.|.|+|.-|++|+.|+++|+||+|. .+.+..+.. -..+|+
T Consensus 199 ~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRa-D~~~a~ys~~~~~~git 277 (343)
T KOG0286|consen 199 GNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRA-DQELAVYSHDSIICGIT 277 (343)
T ss_pred CCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecC-CcEEeeeccCcccCCce
Confidence 99999999999999999999999999999999999999999999999999999999999997 666666653 235899
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEecCCcc
Q 013184 368 SIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDRTYG 430 (448)
Q Consensus 368 ~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~~~ 430 (448)
+++||..|++|.+|..|..+.|||.-.++....+.+|...|+++..+|||..|++|+||.+++
T Consensus 278 Sv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lr 340 (343)
T KOG0286|consen 278 SVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLR 340 (343)
T ss_pred eEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHhee
Confidence 999999999999999999999999999999999999999999999999999999999998765
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.2e-37 Score=274.56 Aligned_cols=270 Identities=18% Similarity=0.219 Sum_probs=231.2
Q ss_pred eeCCCCeEEEe-cCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCCCeEEEE
Q 013184 140 WSTSKHDVYLM-SHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQGELICK 216 (448)
Q Consensus 140 ~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~dg~i~vw 216 (448)
+++....+... +|.++++||+.+. .+.....||.. -|.|+++ +++.||+|+.||+|++|
T Consensus 123 fsp~g~~l~tGsGD~TvR~WD~~Te--Tp~~t~KgH~~----------------WVlcvawsPDgk~iASG~~dg~I~lw 184 (480)
T KOG0271|consen 123 FSPTGSRLVTGSGDTTVRLWDLDTE--TPLFTCKGHKN----------------WVLCVAWSPDGKKIASGSKDGSIRLW 184 (480)
T ss_pred ecCCCceEEecCCCceEEeeccCCC--CcceeecCCcc----------------EEEEEEECCCcchhhccccCCeEEEe
Confidence 45655566665 4677999998764 44555566654 4788888 99999999999999999
Q ss_pred EcCCCCceeEEEeecCCCCceeeEEEEe---CCCCCeeEEEEeCCCcEEEEecCCceEEEEee-cCCCeeEEEECCCCCE
Q 013184 217 YLDQPGVSFCSRTTYDENAITNAVEIYN---SPSGGIHFMASNNDCGVRDFDMERFQLSKHFS-FPWPVNHTSLSPDGKL 292 (448)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~ 292 (448)
+..+++.. .+....|...+.+++|.. .|.. .+|++++.||.|+|||+..++++..+. |..+|+|+.|--+| +
T Consensus 185 dpktg~~~--g~~l~gH~K~It~Lawep~hl~p~~-r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-l 260 (480)
T KOG0271|consen 185 DPKTGQQI--GRALRGHKKWITALAWEPLHLVPPC-RRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-L 260 (480)
T ss_pred cCCCCCcc--cccccCcccceeEEeecccccCCCc-cceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-e
Confidence 98877643 344556666677887732 2333 489999999999999999999988887 99999999997554 8
Q ss_pred EEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEc-----------CCCCE-------------------------EE
Q 013184 293 LVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWH-----------PDGRI-------------------------FA 336 (448)
Q Consensus 293 l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~-----------p~g~~-------------------------l~ 336 (448)
+++++.|++|++|+...|++.+.|++|...|+.++.+ |.+++ ++
T Consensus 261 iySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlV 340 (480)
T KOG0271|consen 261 IYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLV 340 (480)
T ss_pred EEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeE
Confidence 9999999999999999999999999999999988776 44444 99
Q ss_pred EEeCCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccC
Q 013184 337 TGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPD 416 (448)
Q Consensus 337 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspd 416 (448)
+|+.|.++.+|+.....+++..+.+|..-|+.+.||||++++|+|+.|..|++|+.++|+.+..+.+|-+.|..++|+.|
T Consensus 341 SgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaD 420 (480)
T KOG0271|consen 341 SGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSAD 420 (480)
T ss_pred EecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccC
Confidence 99999999999998878899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEecCCcce
Q 013184 417 TEALFIGVWDRTYGS 431 (448)
Q Consensus 417 g~~L~~~~~D~~~~~ 431 (448)
.+.|++|+.|.+++.
T Consensus 421 sRLlVS~SkDsTLKv 435 (480)
T KOG0271|consen 421 SRLLVSGSKDSTLKV 435 (480)
T ss_pred ccEEEEcCCCceEEE
Confidence 999999999987653
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3e-37 Score=276.61 Aligned_cols=266 Identities=21% Similarity=0.293 Sum_probs=231.0
Q ss_pred eeeeCCCCeEEEec-CCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe-------cCCEEEEEeC
Q 013184 138 LVWSTSKHDVYLMS-HFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV-------RDNLLIAGGF 209 (448)
Q Consensus 138 l~~~~~~~~v~~~~-~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~-------~~~~lvsg~~ 209 (448)
+-|+|+...|..++ +++|++||+.++.. ....+.||.. .|++|++ ..++|++++.
T Consensus 163 vawsPDgk~iASG~~dg~I~lwdpktg~~-~g~~l~gH~K----------------~It~Lawep~hl~p~~r~las~sk 225 (480)
T KOG0271|consen 163 VAWSPDGKKIASGSKDGSIRLWDPKTGQQ-IGRALRGHKK----------------WITALAWEPLHLVPPCRRLASSSK 225 (480)
T ss_pred EEECCCcchhhccccCCeEEEecCCCCCc-ccccccCccc----------------ceeEEeecccccCCCccceecccC
Confidence 45888888888865 78899999876532 2235667765 3889988 5678999999
Q ss_pred CCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee-cCCCeeEEEEC-
Q 013184 210 QGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS-FPWPVNHTSLS- 287 (448)
Q Consensus 210 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~s- 287 (448)
||.++||++..... ......|...+.|+++ .|.-++++|+.|++|++|+...|.+.+.+. |...|+.++.+
T Consensus 226 Dg~vrIWd~~~~~~---~~~lsgHT~~VTCvrw----GG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsT 298 (480)
T KOG0271|consen 226 DGSVRIWDTKLGTC---VRTLSGHTASVTCVRW----GGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALST 298 (480)
T ss_pred CCCEEEEEccCceE---EEEeccCccceEEEEE----cCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccc
Confidence 99999999876543 4556677777888887 334499999999999999999999999888 99999999887
Q ss_pred ----------CCCC-------------------------EEEEEecCCcEEEEECCC-CceeEeeecCCCcEEEEEEcCC
Q 013184 288 ----------PDGK-------------------------LLVIVGDNPEGILVDSQT-GKAIMPLCGHLDFSFASAWHPD 331 (448)
Q Consensus 288 ----------p~~~-------------------------~l~~~~~d~~i~i~d~~~-~~~~~~l~~h~~~v~~~~~~p~ 331 (448)
|.++ .+++|++|.++.+|+... .+++..+.+|..-|..+.|+||
T Consensus 299 dy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd 378 (480)
T KOG0271|consen 299 DYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPD 378 (480)
T ss_pred hhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCC
Confidence 2233 499999999999999754 5588899999999999999999
Q ss_pred CCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEE
Q 013184 332 GRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGM 411 (448)
Q Consensus 332 g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~ 411 (448)
+++||+++-|++|++|+.++ ++.+..+.+|.++|+.++|+.|.++|++|+.|.+++||++++.+....+.+|..+|.++
T Consensus 379 ~r~IASaSFDkSVkLW~g~t-Gk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~v 457 (480)
T KOG0271|consen 379 GRYIASASFDKSVKLWDGRT-GKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAV 457 (480)
T ss_pred ccEEEEeecccceeeeeCCC-cchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEE
Confidence 99999999999999999988 89999999999999999999999999999999999999999988888899999999999
Q ss_pred EEccCCCeEEEEEecCC
Q 013184 412 TFSPDTEALFIGVWDRT 428 (448)
Q Consensus 412 ~fspdg~~L~~~~~D~~ 428 (448)
.|+|||+.+++|+.|+.
T Consensus 458 DwspDG~rV~sggkdkv 474 (480)
T KOG0271|consen 458 DWSPDGQRVASGGKDKV 474 (480)
T ss_pred EecCCCceeecCCCceE
Confidence 99999999999998854
No 6
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=9.7e-34 Score=240.90 Aligned_cols=263 Identities=18% Similarity=0.276 Sum_probs=225.3
Q ss_pred Ccccc--cccceeeeCCCCeEEEecCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEE
Q 013184 129 TILHF--QLRNLVWSTSKHDVYLMSHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLL 204 (448)
Q Consensus 129 ~~~hf--q~r~l~~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~l 204 (448)
+|.|. |...|-..+.++.+..++...|+++|+.+.+-.+++++.||.. .|+++.| +|+.+
T Consensus 35 Tiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~k----------------NVtaVgF~~dgrWM 98 (311)
T KOG0315|consen 35 TIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTK----------------NVTAVGFQCDGRWM 98 (311)
T ss_pred EEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCC----------------ceEEEEEeecCeEE
Confidence 34444 5556667788888999999999999999888889999998865 3888888 99999
Q ss_pred EEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee--cCCCee
Q 013184 205 IAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS--FPWPVN 282 (448)
Q Consensus 205 vsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~~v~ 282 (448)
++||.||+++||++..... .+.. .+++.++.+.+ +|+.. .|++|..+|.|++||+....+...+- ...+|.
T Consensus 99 yTgseDgt~kIWdlR~~~~---qR~~-~~~spVn~vvl--hpnQt-eLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~ 171 (311)
T KOG0315|consen 99 YTGSEDGTVKIWDLRSLSC---QRNY-QHNSPVNTVVL--HPNQT-ELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQ 171 (311)
T ss_pred EecCCCceEEEEeccCccc---chhc-cCCCCcceEEe--cCCcc-eEEeecCCCcEEEEEccCCccccccCCCCCccee
Confidence 9999999999999988443 3333 44577888877 78766 89999999999999998876655544 557899
Q ss_pred EEEECCCCCEEEEEecCCcEEEEECCCCc------eeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcce
Q 013184 283 HTSLSPDGKLLVIVGDNPEGILVDSQTGK------AIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSV 356 (448)
Q Consensus 283 ~~~~sp~~~~l~~~~~d~~i~i~d~~~~~------~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~ 356 (448)
++...|+|++++.+...|.+++|++-+.+ ++..++.|...+..+.+||++++||+++.|.+++||+....-+.-
T Consensus 172 sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle 251 (311)
T KOG0315|consen 172 SLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLE 251 (311)
T ss_pred eEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeE
Confidence 99999999999999999999999987653 466788999999999999999999999999999999998743566
Q ss_pred EEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEc
Q 013184 357 AVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFS 414 (448)
Q Consensus 357 ~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fs 414 (448)
..+++|...+...+||.+|+||++|+.|+.+++|++..++.+.+..+|.....+++..
T Consensus 252 ~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 252 LVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred EEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 7889999999999999999999999999999999999999999999988777776653
No 7
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=8.2e-35 Score=283.17 Aligned_cols=234 Identities=23% Similarity=0.377 Sum_probs=212.3
Q ss_pred eeEEEEe--cCCEEEEEeCCCeEEEEEcCCCC----------------------------ceeEEEeecCCCCceeeEEE
Q 013184 193 QVSTLAV--RDNLLIAGGFQGELICKYLDQPG----------------------------VSFCSRTTYDENAITNAVEI 242 (448)
Q Consensus 193 ~i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~----------------------------~~~~~~~~~~~~~~~~~v~~ 242 (448)
.++|..+ ++.+||.|-.|..|++|.+...+ .....+...+|.+++..+.+
T Consensus 380 ~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sF 459 (707)
T KOG0263|consen 380 GVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSF 459 (707)
T ss_pred cceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeee
Confidence 4677777 77888999999999999987311 01123345677888877777
Q ss_pred EeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee-cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCC
Q 013184 243 YNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS-FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLD 321 (448)
Q Consensus 243 ~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~ 321 (448)
+|+.+ +|+++|.|+++|+|.+.+..++-.+. |..||+.+.|+|.|-++|+++.|++.++|.....++++.+.+|..
T Consensus 460 --sPd~r-fLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghls 536 (707)
T KOG0263|consen 460 --SPDRR-FLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLS 536 (707)
T ss_pred --ccccc-ceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhccccc
Confidence 88876 99999999999999999999888888 999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeee
Q 013184 322 FSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQE 401 (448)
Q Consensus 322 ~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~ 401 (448)
.|.|+.|||+..|++||+.|.+||+||+.+ +..++.+.||.++|.+++|||+|++||+|+.|+.|.|||+.++..+.++
T Consensus 537 DV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~-G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l 615 (707)
T KOG0263|consen 537 DVDCVSFHPNSNYVATGSSDRTVRLWDVST-GNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQL 615 (707)
T ss_pred ccceEEECCcccccccCCCCceEEEEEcCC-CcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhh
Confidence 999999999999999999999999999987 8999999999999999999999999999999999999999999999999
Q ss_pred ecCcCceEEEEEccCCCeEEEEEecCCcc
Q 013184 402 IDFFGEISGMTFSPDTEALFIGVWDRTYG 430 (448)
Q Consensus 402 ~~~~~~v~~~~fspdg~~L~~~~~D~~~~ 430 (448)
.+|.+.|.++.||.+|..|++|+.|.++.
T Consensus 616 ~~Ht~ti~SlsFS~dg~vLasgg~DnsV~ 644 (707)
T KOG0263|consen 616 KGHTGTIYSLSFSRDGNVLASGGADNSVR 644 (707)
T ss_pred hcccCceeEEEEecCCCEEEecCCCCeEE
Confidence 99999999999999999999999997754
No 8
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.4e-34 Score=261.60 Aligned_cols=270 Identities=19% Similarity=0.290 Sum_probs=228.9
Q ss_pred ceeeeCCCCeEEEec-CCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCCCeE
Q 013184 137 NLVWSTSKHDVYLMS-HFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQGEL 213 (448)
Q Consensus 137 ~l~~~~~~~~v~~~~-~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~dg~i 213 (448)
.+.|.+.+..+.+++ .+.+.+|+..+-+.+.++ ..|-. .|.+|.+ ++..+++|..+|.|
T Consensus 101 ~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtil--QaHDs----------------~Vr~m~ws~~g~wmiSgD~gG~i 162 (464)
T KOG0284|consen 101 VVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETIL--QAHDS----------------PVRTMKWSHNGTWMISGDKGGMI 162 (464)
T ss_pred eEEEcCCCceeEeecccccEEEecCceeeHHHHh--hhhcc----------------cceeEEEccCCCEEEEcCCCceE
Confidence 356889988888875 556999997443333332 22333 4889988 99999999999999
Q ss_pred EEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee-cCCCeeEEEECCCCCE
Q 013184 214 ICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS-FPWPVNHTSLSPDGKL 292 (448)
Q Consensus 214 ~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~ 292 (448)
++|+.+...++ .+..++...+..+++ +|++. .|++|+.||+|+|||....+....+. |.+.|.++.|+|...+
T Consensus 163 KyWqpnmnnVk---~~~ahh~eaIRdlaf--SpnDs-kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgL 236 (464)
T KOG0284|consen 163 KYWQPNMNNVK---IIQAHHAEAIRDLAF--SPNDS-KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGL 236 (464)
T ss_pred EecccchhhhH---HhhHhhhhhhheecc--CCCCc-eeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccce
Confidence 99998876643 344456566777776 88766 89999999999999998877777777 9999999999999999
Q ss_pred EEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEEEEc
Q 013184 293 LVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFT 372 (448)
Q Consensus 293 l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~s 372 (448)
|++++.|..|++||.++|.++.++.+|+..|..+.|+|++++|+|++.|..++++|+|. -+.+.++++|...|+++.|+
T Consensus 237 iasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~-mkEl~~~r~Hkkdv~~~~Wh 315 (464)
T KOG0284|consen 237 IASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRT-MKELFTYRGHKKDVTSLTWH 315 (464)
T ss_pred eEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhH-hHHHHHhhcchhhheeeccc
Confidence 99999999999999999999999999999999999999999999999999999999995 67888999999999999999
Q ss_pred CCC-CEEEEEeCCCeEEEEECCCCceeee-eecCcCceEEEEEccCCCeEEEEEecCCcce
Q 013184 373 SDG-NFMAMAEPADFVHVYDAKNGFEKEQ-EIDFFGEISGMTFSPDTEALFIGVWDRTYGS 431 (448)
Q Consensus 373 p~g-~~l~s~~~d~~v~vwd~~~~~~~~~-~~~~~~~v~~~~fspdg~~L~~~~~D~~~~~ 431 (448)
|-. .+|.+|+.||.|..|.+...+.+.. ..+|.+.|++++|+|=|..|++|+.|.+++-
T Consensus 316 P~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rf 376 (464)
T KOG0284|consen 316 PLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRF 376 (464)
T ss_pred cccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceee
Confidence 954 6888999999999999985454433 4469999999999999999999999977543
No 9
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3e-32 Score=235.54 Aligned_cols=264 Identities=17% Similarity=0.239 Sum_probs=208.5
Q ss_pred CCCCeEEEe-c-CCeEEEEecCCCcee---EEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCCCeEE
Q 013184 142 TSKHDVYLM-S-HFSIVHWSSLSSKRT---EVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQGELI 214 (448)
Q Consensus 142 ~~~~~v~~~-~-~~~v~~w~~~~~~~~---~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~dg~i~ 214 (448)
+...+++++ + +.++.+|++...+.. .+..+.||.. .|..+.. ++++.++++.||+++
T Consensus 25 ~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH----------------~v~dv~~s~dg~~alS~swD~~lr 88 (315)
T KOG0279|consen 25 IKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSH----------------FVSDVVLSSDGNFALSASWDGTLR 88 (315)
T ss_pred cCCCceEEEcccceEEEEEEeccCccccCceeeeeeccce----------------EecceEEccCCceEEeccccceEE
Confidence 333445554 3 556999997554322 3455556543 3565555 999999999999999
Q ss_pred EEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEeec--CCCeeEEEECCC--C
Q 013184 215 CKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFSF--PWPVNHTSLSPD--G 290 (448)
Q Consensus 215 vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~--~~~v~~~~~sp~--~ 290 (448)
+||+.+... .+....|...+.++++ ++++. .+++|+.|.+|++|++.+......... ...|+|+.|+|+ .
T Consensus 89 lWDl~~g~~---t~~f~GH~~dVlsva~--s~dn~-qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~ 162 (315)
T KOG0279|consen 89 LWDLATGES---TRRFVGHTKDVLSVAF--STDNR-QIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESN 162 (315)
T ss_pred EEEecCCcE---EEEEEecCCceEEEEe--cCCCc-eeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCC
Confidence 999998743 3344466666677777 88775 899999999999999986655544443 678999999997 7
Q ss_pred CEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEEE
Q 013184 291 KLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIR 370 (448)
Q Consensus 291 ~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~ 370 (448)
.+|+.++.|++|++||+++-+..+.+.+|.+.++.++++|||.++++|+.||.+.+||++. ++.+..+. |...|++++
T Consensus 163 p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~-~k~lysl~-a~~~v~sl~ 240 (315)
T KOG0279|consen 163 PIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNE-GKNLYSLE-AFDIVNSLC 240 (315)
T ss_pred cEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccC-CceeEecc-CCCeEeeEE
Confidence 8999999999999999999999999999999999999999999999999999999999987 67776665 778999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCceeeeeec----C-----cCceEEEEEccCCCeEEEEEecCCcc
Q 013184 371 FTSDGNFMAMAEPADFVHVYDAKNGFEKEQEID----F-----FGEISGMTFSPDTEALFIGVWDRTYG 430 (448)
Q Consensus 371 ~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~----~-----~~~v~~~~fspdg~~L~~~~~D~~~~ 430 (448)
|+|+.-+|+.+ .+..|+|||+.++..+..+.. . .-...+++|++||..|++|-.|+.++
T Consensus 241 fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~ir 308 (315)
T KOG0279|consen 241 FSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIR 308 (315)
T ss_pred ecCCceeEeec-cCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEE
Confidence 99986555555 455699999999877654432 1 12367899999999999999987654
No 10
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-32 Score=246.10 Aligned_cols=270 Identities=17% Similarity=0.239 Sum_probs=236.7
Q ss_pred eeeeCCCCeEEEe-cCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCCCeEE
Q 013184 138 LVWSTSKHDVYLM-SHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQGELI 214 (448)
Q Consensus 138 l~~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~dg~i~ 214 (448)
++.-|..-.++.+ -+++|++||..++.. ...+.||... |..+++ .|++||+++.|=.+.
T Consensus 114 v~~hp~~~~v~~as~d~tikv~D~~tg~~--e~~LrGHt~s----------------v~di~~~a~Gk~l~tcSsDl~~~ 175 (406)
T KOG0295|consen 114 VIFHPSEALVVSASEDATIKVFDTETGEL--ERSLRGHTDS----------------VFDISFDASGKYLATCSSDLSAK 175 (406)
T ss_pred eeeccCceEEEEecCCceEEEEEccchhh--hhhhhccccc----------------eeEEEEecCccEEEecCCccchh
Confidence 3444555555666 377899999988776 5567788763 778888 789999999999999
Q ss_pred EEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee-cCCCeeEEEECCCCCEE
Q 013184 215 CKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS-FPWPVNHTSLSPDGKLL 293 (448)
Q Consensus 215 vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l 293 (448)
+|++.+. ..|.+....|...+.++.+ -|.|. ++++++.|.+|+.|++.++-++.++. |+..|..++.+.||.++
T Consensus 176 LWd~~~~--~~c~ks~~gh~h~vS~V~f--~P~gd-~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~ 250 (406)
T KOG0295|consen 176 LWDFDTF--FRCIKSLIGHEHGVSSVFF--LPLGD-HILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTII 250 (406)
T ss_pred heeHHHH--HHHHHHhcCcccceeeEEE--EecCC-eeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEE
Confidence 9998764 2334555567777778877 56664 99999999999999999999999998 88899999999999999
Q ss_pred EEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCC---------------CCEEEEEeCCCcEEEEEccCCCcceEE
Q 013184 294 VIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPD---------------GRIFATGNQDKTCRVWDVRNLSKSVAV 358 (448)
Q Consensus 294 ~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~---------------g~~l~s~~~d~~i~iwd~~~~~~~~~~ 358 (448)
++++.|.++++|-..++++...+..|..+|-+++|.|. +++++++++|++|++||+.+ +.++.+
T Consensus 251 As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~t-g~cL~t 329 (406)
T KOG0295|consen 251 ASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVST-GMCLFT 329 (406)
T ss_pred EecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccC-CeEEEE
Confidence 99999999999999999999999999999999999773 25899999999999999977 899999
Q ss_pred EccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEecCCcce
Q 013184 359 LKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDRTYGS 431 (448)
Q Consensus 359 ~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~~~~ 431 (448)
+.+|...|+.++|+|.|+||+++..|++++|||++++++...+..|..-|+++.|+.+-.++++|+-|.+++.
T Consensus 330 L~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~Kv 402 (406)
T KOG0295|consen 330 LVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKV 402 (406)
T ss_pred EecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987654
No 11
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.1e-31 Score=228.51 Aligned_cols=254 Identities=19% Similarity=0.224 Sum_probs=211.2
Q ss_pred CCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeEEEe
Q 013184 152 HFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQGELICKYLDQPGVSFCSRT 229 (448)
Q Consensus 152 ~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~ 229 (448)
|.+|+.|...++.....+... ..+|..|.. +++.|++++. -.|++||+++....... .
T Consensus 19 DhTIRfWqa~tG~C~rTiqh~------------------dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~-t 78 (311)
T KOG0315|consen 19 DHTIRFWQALTGICSRTIQHP------------------DSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVA-T 78 (311)
T ss_pred cceeeeeehhcCeEEEEEecC------------------ccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCcee-E
Confidence 668999999887655544221 135677766 7777887775 46899999988754333 3
Q ss_pred ecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEeecCCCeeEEEECCCCCEEEEEecCCcEEEEECCC
Q 013184 230 TYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFSFPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQT 309 (448)
Q Consensus 230 ~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~ 309 (448)
...+..-+.++.| ..+| +.+++|+.||+++|||++...+.+.+++..+|+++..+|+...|+++..+|.|++||+..
T Consensus 79 ~e~h~kNVtaVgF--~~dg-rWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~ 155 (311)
T KOG0315|consen 79 FEGHTKNVTAVGF--QCDG-RWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGE 155 (311)
T ss_pred EeccCCceEEEEE--eecC-eEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccC
Confidence 3445555667766 5565 499999999999999999988999999999999999999999999999999999999998
Q ss_pred CceeEeeec-CCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCC-----CcceEEEccCCCCeEEEEEcCCCCEEEEEeC
Q 013184 310 GKAIMPLCG-HLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNL-----SKSVAVLKGNLGAIRSIRFTSDGNFMAMAEP 383 (448)
Q Consensus 310 ~~~~~~l~~-h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~-----~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~ 383 (448)
..+.+.+-. ...+|.+++..|+|.+++.++..|++.+|++-+. -.++..++.|.+.+..+.+||++++||+++.
T Consensus 156 ~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ss 235 (311)
T KOG0315|consen 156 NSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSS 235 (311)
T ss_pred CccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecC
Confidence 877666543 4567999999999999999999999999998641 2467788999999999999999999999999
Q ss_pred CCeEEEEECCCC-ceeeeeecCcCceEEEEEccCCCeEEEEEecCC
Q 013184 384 ADFVHVYDAKNG-FEKEQEIDFFGEISGMTFSPDTEALFIGVWDRT 428 (448)
Q Consensus 384 d~~v~vwd~~~~-~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~ 428 (448)
|.+++||++.+. +...++.+|...+++++||.||+||++|+.|..
T Consensus 236 dktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~ 281 (311)
T KOG0315|consen 236 DKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHT 281 (311)
T ss_pred CceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCc
Confidence 999999999887 445677889999999999999999999999954
No 12
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.6e-32 Score=267.23 Aligned_cols=197 Identities=23% Similarity=0.321 Sum_probs=182.7
Q ss_pred eeEEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCce
Q 013184 193 QVSTLAV--RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQ 270 (448)
Q Consensus 193 ~i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~ 270 (448)
+|...++ +.++|++++.|+++++|.+.+... .....+|..+++.+.| +|.| .+|++|+.|++.++|.....+
T Consensus 453 PVyg~sFsPd~rfLlScSED~svRLWsl~t~s~---~V~y~GH~~PVwdV~F--~P~G-yYFatas~D~tArLWs~d~~~ 526 (707)
T KOG0263|consen 453 PVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSC---LVIYKGHLAPVWDVQF--APRG-YYFATASHDQTARLWSTDHNK 526 (707)
T ss_pred ceeeeeecccccceeeccCCcceeeeeccccee---EEEecCCCcceeeEEe--cCCc-eEEEecCCCceeeeeecccCC
Confidence 5777777 889999999999999999998654 4455688899999987 7886 599999999999999999999
Q ss_pred EEEEee-cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 013184 271 LSKHFS-FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDV 349 (448)
Q Consensus 271 ~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~ 349 (448)
+.+.+. |-..|.|+.|+|+..++++|+.|.+|++||+.+|..++.|.||.++|.+++|+|+|++|++|+.|+.|.|||+
T Consensus 527 PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl 606 (707)
T KOG0263|consen 527 PLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDL 606 (707)
T ss_pred chhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEc
Confidence 999888 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 013184 350 RNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGF 396 (448)
Q Consensus 350 ~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~ 396 (448)
.+ +..+..+.+|.+.|.++.||.+|..||+|+.|++|++||+....
T Consensus 607 ~~-~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 607 AN-GSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred CC-CcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence 87 89999999999999999999999999999999999999986543
No 13
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.4e-31 Score=231.23 Aligned_cols=236 Identities=20% Similarity=0.292 Sum_probs=204.5
Q ss_pred EecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCC
Q 013184 169 LDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSP 246 (448)
Q Consensus 169 ~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 246 (448)
..+.||+. +|.+|.+ +.++|++++.||.+.|||.-+..+.....+. ....+...++|
T Consensus 49 r~LkGH~~----------------Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~-----s~WVMtCA~sP 107 (343)
T KOG0286|consen 49 RTLKGHLN----------------KIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLP-----SSWVMTCAYSP 107 (343)
T ss_pred EEeccccc----------------ceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecC-----ceeEEEEEECC
Confidence 45678877 5999988 8899999999999999998877654333321 23556666799
Q ss_pred CCCeeEEEEeCCCcEEEEecCCc------eEEEEee-cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecC
Q 013184 247 SGGIHFMASNNDCGVRDFDMERF------QLSKHFS-FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGH 319 (448)
Q Consensus 247 ~~~~~l~s~s~dg~v~iwd~~~~------~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h 319 (448)
+|+ .+++|+-|....||++.+. +..+.+. |.+.+.|+.|-+ ...|++++.|.++.+||+++|+.+..+.+|
T Consensus 108 Sg~-~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH 185 (343)
T KOG0286|consen 108 SGN-FVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGH 185 (343)
T ss_pred CCC-eEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCC
Confidence 997 8999999999999999754 3444555 999999999987 557889999999999999999999999999
Q ss_pred CCcEEEEEEcC-CCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCcee
Q 013184 320 LDFSFASAWHP-DGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEK 398 (448)
Q Consensus 320 ~~~v~~~~~~p-~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~ 398 (448)
.+.|.+++++| +++.+++|+-|+..+|||+|. +.+++.+.+|.+.|++++|.|+|.-+++|+.|++.++||++..+.+
T Consensus 186 ~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~-~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~ 264 (343)
T KOG0286|consen 186 TGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRS-GQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQEL 264 (343)
T ss_pred cccEEEEecCCCCCCeEEecccccceeeeeccC-cceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEE
Confidence 99999999999 999999999999999999998 7999999999999999999999999999999999999999998887
Q ss_pred eeeec--CcCceEEEEEccCCCeEEEEEecCC
Q 013184 399 EQEID--FFGEISGMTFSPDTEALFIGVWDRT 428 (448)
Q Consensus 399 ~~~~~--~~~~v~~~~fspdg~~L~~~~~D~~ 428 (448)
..+.. -..+|++++||..|++|++|..|.+
T Consensus 265 a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~ 296 (343)
T KOG0286|consen 265 AVYSHDSIICGITSVAFSKSGRLLFAGYDDFT 296 (343)
T ss_pred eeeccCcccCCceeEEEcccccEEEeeecCCc
Confidence 66553 3367999999999999999865544
No 14
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=8.3e-32 Score=247.67 Aligned_cols=270 Identities=19% Similarity=0.263 Sum_probs=227.9
Q ss_pred cccceeeeCCCCeEEEec-CCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCC
Q 013184 134 QLRNLVWSTSKHDVYLMS-HFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQ 210 (448)
Q Consensus 134 q~r~l~~~~~~~~v~~~~-~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~d 210 (448)
++..|-|..++..+.+++ ++.+++|+... ..+..+..|..| |.+|.+ .|++|++++.|
T Consensus 237 dVT~L~Wn~~G~~LatG~~~G~~riw~~~G---~l~~tl~~HkgP----------------I~slKWnk~G~yilS~~vD 297 (524)
T KOG0273|consen 237 DVTSLDWNNDGTLLATGSEDGEARIWNKDG---NLISTLGQHKGP----------------IFSLKWNKKGTYILSGGVD 297 (524)
T ss_pred CcceEEecCCCCeEEEeecCcEEEEEecCc---hhhhhhhccCCc----------------eEEEEEcCCCCEEEeccCC
Confidence 455677888888888875 77799999543 333445555554 999999 78999999999
Q ss_pred CeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee-cCCCeeEEEECCC
Q 013184 211 GELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS-FPWPVNHTSLSPD 289 (448)
Q Consensus 211 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~ 289 (448)
|++.+||..++....... -+.....-+.| -.+. .|++++.|+.|+++.+....++.++. |.++|+++.|+|.
T Consensus 298 ~ttilwd~~~g~~~q~f~---~~s~~~lDVdW--~~~~--~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~t 370 (524)
T KOG0273|consen 298 GTTILWDAHTGTVKQQFE---FHSAPALDVDW--QSND--EFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPT 370 (524)
T ss_pred ccEEEEeccCceEEEeee---eccCCccceEE--ecCc--eEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCC
Confidence 999999987776543222 22333223444 3333 69999999999999998888888887 9999999999999
Q ss_pred CCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCC---------CEEEEEeCCCcEEEEEccCCCcceEEEc
Q 013184 290 GKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDG---------RIFATGNQDKTCRVWDVRNLSKSVAVLK 360 (448)
Q Consensus 290 ~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g---------~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 360 (448)
|.+|+++++|++++||........+.|.+|...|..+.|+|.| ..+++++.|++|++||+.. +.+++++.
T Consensus 371 g~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~-gv~i~~f~ 449 (524)
T KOG0273|consen 371 GSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVES-GVPIHTLM 449 (524)
T ss_pred CceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccC-CceeEeec
Confidence 9999999999999999999999999999999999999999976 3699999999999999976 89999999
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEecCCcce
Q 013184 361 GNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDRTYGS 431 (448)
Q Consensus 361 ~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~~~~ 431 (448)
.|..+|.+++|||+|+|||+|+.||.|+||++++++..+...+ .+.|..++|+.+|.+|.++..|+.+..
T Consensus 450 kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd~~vcv 519 (524)
T KOG0273|consen 450 KHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG-TGGIFELCWNAAGDKLGACASDGSVCV 519 (524)
T ss_pred cCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC-CCeEEEEEEcCCCCEEEEEecCCCceE
Confidence 9999999999999999999999999999999999987766655 566999999999999999999987543
No 15
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.2e-31 Score=229.16 Aligned_cols=225 Identities=19% Similarity=0.313 Sum_probs=193.5
Q ss_pred eeEEEEe---cCCEEEEEeCCCeEEEEEcCCCCcee---EEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEec
Q 013184 193 QVSTLAV---RDNLLIAGGFQGELICKYLDQPGVSF---CSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDM 266 (448)
Q Consensus 193 ~i~~l~~---~~~~lvsg~~dg~i~vw~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~ 266 (448)
.|+.++. +...|++++.|..+.+|++......+ ..++. +|...+..+.+ +++|+ ++++++.|+.+++||+
T Consensus 17 ~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~-GHsH~v~dv~~--s~dg~-~alS~swD~~lrlWDl 92 (315)
T KOG0279|consen 17 WVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLT-GHSHFVSDVVL--SSDGN-FALSASWDGTLRLWDL 92 (315)
T ss_pred eEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeee-ccceEecceEE--ccCCc-eEEeccccceEEEEEe
Confidence 4777777 57899999999999999998776433 33344 46666666666 77876 8999999999999999
Q ss_pred CCceEEEEee-cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeec--CCCcEEEEEEcCC--CCEEEEEeCC
Q 013184 267 ERFQLSKHFS-FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCG--HLDFSFASAWHPD--GRIFATGNQD 341 (448)
Q Consensus 267 ~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~--h~~~v~~~~~~p~--g~~l~s~~~d 341 (448)
.+++..+.|. |...|.+++|+|+.+.+++|+.|.+|++|+...+. ..++.. +.+.|.++.|+|+ ..+|++++.|
T Consensus 93 ~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~c-k~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~D 171 (315)
T KOG0279|consen 93 ATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVC-KYTIHEDSHREWVSCVRFSPNESNPIIVSASWD 171 (315)
T ss_pred cCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccE-EEEEecCCCcCcEEEEEEcCCCCCcEEEEccCC
Confidence 9999888888 99999999999999999999999999999977554 444443 3789999999997 6799999999
Q ss_pred CcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEE
Q 013184 342 KTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALF 421 (448)
Q Consensus 342 ~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~ 421 (448)
++|++||+++ .+..+.+.+|.+.++.+.+||||..+++|+.||.+.+||++.++.++. ..|...|.+++|+|+.-.|+
T Consensus 172 ktvKvWnl~~-~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lys-l~a~~~v~sl~fspnrywL~ 249 (315)
T KOG0279|consen 172 KTVKVWNLRN-CQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYS-LEAFDIVNSLCFSPNRYWLC 249 (315)
T ss_pred ceEEEEccCC-cchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEe-ccCCCeEeeEEecCCceeEe
Confidence 9999999987 778888999999999999999999999999999999999999988654 45789999999999977776
Q ss_pred EEE
Q 013184 422 IGV 424 (448)
Q Consensus 422 ~~~ 424 (448)
.+.
T Consensus 250 ~at 252 (315)
T KOG0279|consen 250 AAT 252 (315)
T ss_pred ecc
Confidence 653
No 16
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.3e-31 Score=258.57 Aligned_cols=272 Identities=17% Similarity=0.278 Sum_probs=228.9
Q ss_pred eeCCCCeEEEecCC-eEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCCCeEEEE
Q 013184 140 WSTSKHDVYLMSHF-SIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQGELICK 216 (448)
Q Consensus 140 ~~~~~~~v~~~~~~-~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~dg~i~vw 216 (448)
+.+....++++++. .+++++..+.... -+.||.. .|.+++. +|-+|++|+.|.++++|
T Consensus 332 lG~e~~~laVATNs~~lr~y~~~~~~c~---ii~GH~e----------------~vlSL~~~~~g~llat~sKD~svilW 392 (775)
T KOG0319|consen 332 LGPEESHLAVATNSPELRLYTLPTSYCQ---IIPGHTE----------------AVLSLDVWSSGDLLATGSKDKSVILW 392 (775)
T ss_pred cCCccceEEEEeCCCceEEEecCCCceE---EEeCchh----------------heeeeeecccCcEEEEecCCceEEEE
Confidence 34555566666544 4888876654443 3456655 3788884 67799999999999999
Q ss_pred EcCCCC-ceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCce-----EEE----E-eecCCCeeEEE
Q 013184 217 YLDQPG-VSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQ-----LSK----H-FSFPWPVNHTS 285 (448)
Q Consensus 217 ~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~-----~~~----~-~~~~~~v~~~~ 285 (448)
.++.+. ...+......|...+.++++ +..+...|+++|.|+++++|++...+ ... . ..|...|+|++
T Consensus 393 r~~~~~~~~~~~a~~~gH~~svgava~--~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Va 470 (775)
T KOG0319|consen 393 RLNNNCSKSLCVAQANGHTNSVGAVAG--SKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVA 470 (775)
T ss_pred EecCCcchhhhhhhhcccccccceeee--cccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceE
Confidence 995443 34445555667777788888 67777799999999999999987621 111 1 12889999999
Q ss_pred ECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCC
Q 013184 286 LSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGA 365 (448)
Q Consensus 286 ~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 365 (448)
++|+.+++|+||.|.+.+||++.......+|.||...|+++.|+|..+.+||+|.|++|+||.+.+ ..|+.++.||...
T Consensus 471 ia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~-fSClkT~eGH~~a 549 (775)
T KOG0319|consen 471 IAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSIST-FSCLKTFEGHTSA 549 (775)
T ss_pred ecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEecc-ceeeeeecCccce
Confidence 999999999999999999999999999999999999999999999999999999999999999987 8999999999999
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEecCCcceEEEEe
Q 013184 366 IRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDRTYGSLLQYN 436 (448)
Q Consensus 366 v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~~~~ll~~~ 436 (448)
|..+.|-.+|+.|++++.||.|+||+++++.+...+-.|...|++++-+|.+..+++|+.|+ ++..|.
T Consensus 550 Vlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg---~i~~wk 617 (775)
T KOG0319|consen 550 VLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDG---RIIFWK 617 (775)
T ss_pred eEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCe---EEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999995 444443
No 17
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=7.3e-31 Score=229.07 Aligned_cols=268 Identities=16% Similarity=0.260 Sum_probs=228.4
Q ss_pred eeCCCCeEEEe-cCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCCCeEEEE
Q 013184 140 WSTSKHDVYLM-SHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQGELICK 216 (448)
Q Consensus 140 ~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~dg~i~vw 216 (448)
+.|.+..+..+ .|..|.+|+.. +..+....+.||.. .|..+.+ +++.++++|.|.+|+.|
T Consensus 55 F~P~gs~~aSgG~Dr~I~LWnv~-gdceN~~~lkgHsg----------------AVM~l~~~~d~s~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 55 FHPDGSCFASGGSDRAIVLWNVY-GDCENFWVLKGHSG----------------AVMELHGMRDGSHILSCGTDKTVRGW 117 (338)
T ss_pred ECCCCCeEeecCCcceEEEEecc-ccccceeeeccccc----------------eeEeeeeccCCCEEEEecCCceEEEE
Confidence 44533333333 46679999943 45555666667766 5888888 99999999999999999
Q ss_pred EcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEeecCCCeeEEEECCCCCEEEEE
Q 013184 217 YLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFSFPWPVNHTSLSPDGKLLVIV 296 (448)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~ 296 (448)
|..+++.. +-...|...++++.. ..-|..++.+++.|+++++||+++...++++..+.+++++.|..++..+.+|
T Consensus 118 D~~tG~~~---rk~k~h~~~vNs~~p--~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sg 192 (338)
T KOG0265|consen 118 DAETGKRI---RKHKGHTSFVNSLDP--SRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISG 192 (338)
T ss_pred ecccceee---ehhccccceeeecCc--cccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeec
Confidence 99988753 333456777888764 5667778999999999999999999999999888999999999999999999
Q ss_pred ecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCC---CcceEEEccCCC----CeEEE
Q 013184 297 GDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNL---SKSVAVLKGNLG----AIRSI 369 (448)
Q Consensus 297 ~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~---~~~~~~~~~~~~----~v~~l 369 (448)
+-|+.|++||++.+...+.+.||.+.|+.+..+|+|.++.+-+.|.++++||+|.. .+++..+.+|.- ..-.+
T Consensus 193 gIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~c 272 (338)
T KOG0265|consen 193 GIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKC 272 (338)
T ss_pred cccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhccee
Confidence 99999999999999999999999999999999999999999999999999999852 245777777643 34567
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEecCCc
Q 013184 370 RFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDRTY 429 (448)
Q Consensus 370 ~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~~ 429 (448)
+|+|+++++.+|+.|..|++||..+...++.+++|.+.|..+.|+|...+|.+++.|.++
T Consensus 273 swsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i 332 (338)
T KOG0265|consen 273 SWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTI 332 (338)
T ss_pred eccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCcee
Confidence 899999999999999999999998888899999999999999999999999999999764
No 18
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=6.3e-31 Score=241.91 Aligned_cols=274 Identities=17% Similarity=0.227 Sum_probs=224.7
Q ss_pred eeCCCCeEEEec--CCeEEEEecCC--CceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCCCeE
Q 013184 140 WSTSKHDVYLMS--HFSIVHWSSLS--SKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQGEL 213 (448)
Q Consensus 140 ~~~~~~~v~~~~--~~~v~~w~~~~--~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~dg~i 213 (448)
|.|....+|.++ +...++|++.. ......+.++-+..- .......+..|++|++ +|..||+|+.+|.+
T Consensus 186 WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~------~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~ 259 (524)
T KOG0273|consen 186 WNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIRE------GGKSVPSNKDVTSLDWNNDGTLLATGSEDGEA 259 (524)
T ss_pred cCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhh------hcccCCccCCcceEEecCCCCeEEEeecCcEE
Confidence 445555455543 44588998753 111222222211100 0122334568999999 69999999999999
Q ss_pred EEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee-cCCCeeEEEECCCCCE
Q 013184 214 ICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS-FPWPVNHTSLSPDGKL 292 (448)
Q Consensus 214 ~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~ 292 (448)
++|+..... ......|.+++-++.| +..|. +|++++.|+++.+||..+++..+.+. |..+-..+.|-. ...
T Consensus 260 riw~~~G~l----~~tl~~HkgPI~slKW--nk~G~-yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~-~~~ 331 (524)
T KOG0273|consen 260 RIWNKDGNL----ISTLGQHKGPIFSLKW--NKKGT-YILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQS-NDE 331 (524)
T ss_pred EEEecCchh----hhhhhccCCceEEEEE--cCCCC-EEEeccCCccEEEEeccCceEEEeeeeccCCccceEEec-Cce
Confidence 999986544 3455677888878877 77776 99999999999999999999999999 566657788874 457
Q ss_pred EEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEEEEc
Q 013184 293 LVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFT 372 (448)
Q Consensus 293 l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~s 372 (448)
+++.+.|+.|+++-+....++.++.+|.+.|.++.|+|.|.+|++++.|++++||.... ..+++.+.+|...|..+.|+
T Consensus 332 F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~-~~~~~~l~~Hskei~t~~ws 410 (524)
T KOG0273|consen 332 FATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQ-SNSVHDLQAHSKEIYTIKWS 410 (524)
T ss_pred EeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCC-CcchhhhhhhccceeeEeec
Confidence 89999999999999999999999999999999999999999999999999999999876 78899999999999999999
Q ss_pred CCC---------CEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEecCC
Q 013184 373 SDG---------NFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDRT 428 (448)
Q Consensus 373 p~g---------~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~ 428 (448)
|.| ..|++++.|++|++||+..+.++..+..|..+|.+++|+|+|++|++|+.|+.
T Consensus 411 p~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~ 475 (524)
T KOG0273|consen 411 PTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGC 475 (524)
T ss_pred CCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCe
Confidence 976 48899999999999999999999999999999999999999999999988864
No 19
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.98 E-value=5.4e-30 Score=247.66 Aligned_cols=269 Identities=22% Similarity=0.364 Sum_probs=222.2
Q ss_pred cccceeeeCCCCeEEEecCC--eEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeC
Q 013184 134 QLRNLVWSTSKHDVYLMSHF--SIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGF 209 (448)
Q Consensus 134 q~r~l~~~~~~~~v~~~~~~--~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~ 209 (448)
.+..+.+...+.-+.+.+.. ++.+|+..+ ..-+++..||.. .++++++ +|.++|+|+.
T Consensus 309 ~I~t~~~N~tGDWiA~g~~klgQLlVweWqs--EsYVlKQQgH~~----------------~i~~l~YSpDgq~iaTG~e 370 (893)
T KOG0291|consen 309 KILTVSFNSTGDWIAFGCSKLGQLLVWEWQS--ESYVLKQQGHSD----------------RITSLAYSPDGQLIATGAE 370 (893)
T ss_pred eeeEEEecccCCEEEEcCCccceEEEEEeec--cceeeecccccc----------------ceeeEEECCCCcEEEeccC
Confidence 33445555666777777654 799999855 467788888886 4899988 8899999999
Q ss_pred CCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEeecCC--CeeEEEEC
Q 013184 210 QGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFSFPW--PVNHTSLS 287 (448)
Q Consensus 210 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~--~v~~~~~s 287 (448)
||.|+||+... .+|..+...|...+.++++ ...|. .+++++-||+||.||+...+.-+++..+. +..|++..
T Consensus 371 DgKVKvWn~~S---gfC~vTFteHts~Vt~v~f--~~~g~-~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD 444 (893)
T KOG0291|consen 371 DGKVKVWNTQS---GFCFVTFTEHTSGVTAVQF--TARGN-VLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVD 444 (893)
T ss_pred CCcEEEEeccC---ceEEEEeccCCCceEEEEE--EecCC-EEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEc
Confidence 99999999765 4677777778887888888 55655 89999999999999999999999988554 45688888
Q ss_pred CCCCEEEEEecCC-cEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCe
Q 013184 288 PDGKLLVIVGDNP-EGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAI 366 (448)
Q Consensus 288 p~~~~l~~~~~d~-~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v 366 (448)
|.|.++.+|+.|. .|.+|++++|+.+-.+.||.++|.+++|+|.|..|++++.|++||+||+-.....+.++. +...+
T Consensus 445 ~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdv 523 (893)
T KOG0291|consen 445 PSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDV 523 (893)
T ss_pred CCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe-eccce
Confidence 9999999988775 699999999999999999999999999999999999999999999999976455666666 55678
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeec--------------------CcCceEEEEEccCCCeEEEEEec
Q 013184 367 RSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEID--------------------FFGEISGMTFSPDTEALFIGVWD 426 (448)
Q Consensus 367 ~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~--------------------~~~~v~~~~fspdg~~L~~~~~D 426 (448)
..++|+|+|+-||++.-||.|.+||+..+.....+.+ .....+.+++|+||.++++|+.-
T Consensus 524 l~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~s 603 (893)
T KOG0291|consen 524 LAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGES 603 (893)
T ss_pred eEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCc
Confidence 9999999999999999999999999987655422211 12468999999999999988654
Q ss_pred C
Q 013184 427 R 427 (448)
Q Consensus 427 ~ 427 (448)
.
T Consensus 604 n 604 (893)
T KOG0291|consen 604 N 604 (893)
T ss_pred c
Confidence 3
No 20
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=2.1e-28 Score=227.63 Aligned_cols=268 Identities=22% Similarity=0.331 Sum_probs=220.2
Q ss_pred ceeeeCCCCeEEEec-CCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCCCeE
Q 013184 137 NLVWSTSKHDVYLMS-HFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQGEL 213 (448)
Q Consensus 137 ~l~~~~~~~~v~~~~-~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~dg~i 213 (448)
.+.+.+....+++++ ++.|.+|+..+..... ...+|.. .+..+.+ ++++|++++.+|.|
T Consensus 14 ~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~--~~~~~~~----------------~i~~~~~~~~~~~l~~~~~~~~i 75 (289)
T cd00200 14 CVAFSPDGKLLATGSGDGTIKVWDLETGELLR--TLKGHTG----------------PVRDVAASADGTYLASGSSDKTI 75 (289)
T ss_pred EEEEcCCCCEEEEeecCcEEEEEEeeCCCcEE--EEecCCc----------------ceeEEEECCCCCEEEEEcCCCeE
Confidence 345666666676665 7889999987654322 2333333 3556666 66799999999999
Q ss_pred EEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee-cCCCeeEEEECCCCCE
Q 013184 214 ICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS-FPWPVNHTSLSPDGKL 292 (448)
Q Consensus 214 ~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~ 292 (448)
.+|++....... .+. .+...+.++.+ ++++. ++++++.++.|++|++.+++....+. |...|.+++|+|++.+
T Consensus 76 ~i~~~~~~~~~~--~~~-~~~~~i~~~~~--~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 149 (289)
T cd00200 76 RLWDLETGECVR--TLT-GHTSYVSSVAF--SPDGR-ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTF 149 (289)
T ss_pred EEEEcCcccceE--EEe-ccCCcEEEEEE--cCCCC-EEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCE
Confidence 999998754332 222 34444556655 67654 77777779999999999888888777 8889999999999999
Q ss_pred EEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEEEEc
Q 013184 293 LVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFT 372 (448)
Q Consensus 293 l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~s 372 (448)
+++++.++.+++||+++++.+..+..|...+.+++|+|+++.+++++.++.|++||++. ...+..+..|...+.+++|+
T Consensus 150 l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~-~~~~~~~~~~~~~i~~~~~~ 228 (289)
T cd00200 150 VASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLST-GKCLGTLRGHENGVNSVAFS 228 (289)
T ss_pred EEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCC-CceecchhhcCCceEEEEEc
Confidence 88888899999999999999999999999999999999999999999999999999986 67777887888899999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEecCCc
Q 013184 373 SDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDRTY 429 (448)
Q Consensus 373 p~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~~ 429 (448)
|++.++++++.++.|++|++.++.....+..|...|.+++|+|++++|++++.|+.+
T Consensus 229 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i 285 (289)
T cd00200 229 PDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTI 285 (289)
T ss_pred CCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeE
Confidence 999999998889999999999888888888888999999999999999999998753
No 21
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=5.3e-31 Score=243.29 Aligned_cols=233 Identities=19% Similarity=0.288 Sum_probs=202.5
Q ss_pred eeEEEEe---cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCc
Q 013184 193 QVSTLAV---RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERF 269 (448)
Q Consensus 193 ~i~~l~~---~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~ 269 (448)
.|+++.+ .+.+|++|+.|+.|+||++-..+ .|.++..+|...+..+++ ++.|. .|++++-|+.|++||+++|
T Consensus 216 gvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~--~~lrtf~gH~k~Vrd~~~--s~~g~-~fLS~sfD~~lKlwDtETG 290 (503)
T KOG0282|consen 216 GVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR--RCLRTFKGHRKPVRDASF--NNCGT-SFLSASFDRFLKLWDTETG 290 (503)
T ss_pred ccchhhhccceeeEEEecCCCceEEEEEEecCc--ceehhhhcchhhhhhhhc--cccCC-eeeeeecceeeeeeccccc
Confidence 4777766 78999999999999999998744 346777888888888877 77776 8999999999999999999
Q ss_pred eEEEEeecCCCeeEEEECCCC-CEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 013184 270 QLSKHFSFPWPVNHTSLSPDG-KLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWD 348 (448)
Q Consensus 270 ~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd 348 (448)
+++..+.....+.|+.|+|++ +.+++|+.|+.|+.||+++++.++....|.+.|..+.|-|+|+++++++.|++++||+
T Consensus 291 ~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe 370 (503)
T KOG0282|consen 291 QVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWE 370 (503)
T ss_pred eEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEE
Confidence 999999999999999999987 8899999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCc---------------------------------------------ceEEEccCC--CCeEEEEEcCCCCEEEEE
Q 013184 349 VRNLSK---------------------------------------------SVAVLKGNL--GAIRSIRFTSDGNFMAMA 381 (448)
Q Consensus 349 ~~~~~~---------------------------------------------~~~~~~~~~--~~v~~l~~sp~g~~l~s~ 381 (448)
.+.+.. ....+.+|. +.-..+.|||||++|++|
T Consensus 371 ~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SG 450 (503)
T KOG0282|consen 371 NRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSG 450 (503)
T ss_pred cCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEee
Confidence 764210 001123343 234568999999999999
Q ss_pred eCCCeEEEEECCCCceeeeeecCcCceEEEEEccC-CCeEEEEEecCCcc
Q 013184 382 EPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPD-TEALFIGVWDRTYG 430 (448)
Q Consensus 382 ~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspd-g~~L~~~~~D~~~~ 430 (448)
..+|.+.+||.++.+.+..+..|.+.+.++.|+|- ...+|+|+|||.+.
T Consensus 451 dsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ik 500 (503)
T KOG0282|consen 451 DSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIK 500 (503)
T ss_pred cCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeE
Confidence 99999999999999999999999999999999995 46789999998764
No 22
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.97 E-value=1.5e-31 Score=242.05 Aligned_cols=230 Identities=16% Similarity=0.242 Sum_probs=201.3
Q ss_pred eeEEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCce
Q 013184 193 QVSTLAV--RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQ 270 (448)
Q Consensus 193 ~i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~ 270 (448)
.|..+.+ +|+.|++|+..|++.+|+...-.. ..+...|..++.++.+ ++++. .+++|+.+|.|++|+..-..
T Consensus 98 ~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnF---EtilQaHDs~Vr~m~w--s~~g~-wmiSgD~gG~iKyWqpnmnn 171 (464)
T KOG0284|consen 98 PVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNF---ETILQAHDSPVRTMKW--SHNGT-WMISGDKGGMIKYWQPNMNN 171 (464)
T ss_pred ceeeEEEcCCCceeEeecccccEEEecCceeeH---HHHhhhhcccceeEEE--ccCCC-EEEEcCCCceEEecccchhh
Confidence 3566666 889999999999999999743322 1234567788888888 77776 99999999999999986544
Q ss_pred EEEEee-cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 013184 271 LSKHFS-FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDV 349 (448)
Q Consensus 271 ~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~ 349 (448)
+..... |...|++++|+|+...++++++|+.|+|||....+....+.||.-.|.+++|+|...+|++|+.|..|++||.
T Consensus 172 Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDp 251 (464)
T KOG0284|consen 172 VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDP 251 (464)
T ss_pred hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecC
Confidence 433333 5589999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred cCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccC-CCeEEEEEecCC
Q 013184 350 RNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPD-TEALFIGVWDRT 428 (448)
Q Consensus 350 ~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspd-g~~L~~~~~D~~ 428 (448)
++ +.++.++.+|...|..+.|+|+|.+|++++.|..+++||+++.+.+..+.+|...|+++.|+|- ...|.+|++|+.
T Consensus 252 rS-g~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgs 330 (464)
T KOG0284|consen 252 RS-GSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGS 330 (464)
T ss_pred CC-cchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCc
Confidence 98 8999999999999999999999999999999999999999988888899999999999999995 456778898865
Q ss_pred c
Q 013184 429 Y 429 (448)
Q Consensus 429 ~ 429 (448)
+
T Consensus 331 v 331 (464)
T KOG0284|consen 331 V 331 (464)
T ss_pred e
Confidence 4
No 23
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.97 E-value=4.4e-30 Score=228.85 Aligned_cols=246 Identities=20% Similarity=0.252 Sum_probs=214.3
Q ss_pred eeeEEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCc
Q 013184 192 TQVSTLAV--RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERF 269 (448)
Q Consensus 192 ~~i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~ 269 (448)
.-|.|+++ .+..|++|+.|++|.|||+.++..+. ...+|-..+..+.+ ++... ++++++.|+.|+.||++..
T Consensus 152 gWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl---tltGhi~~vr~vav--S~rHp-YlFs~gedk~VKCwDLe~n 225 (460)
T KOG0285|consen 152 GWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL---TLTGHIETVRGVAV--SKRHP-YLFSAGEDKQVKCWDLEYN 225 (460)
T ss_pred ceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE---eecchhheeeeeee--cccCc-eEEEecCCCeeEEEechhh
Confidence 36888888 56799999999999999999887542 23356666777777 66655 8999999999999999999
Q ss_pred eEEEEee-cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 013184 270 QLSKHFS-FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWD 348 (448)
Q Consensus 270 ~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd 348 (448)
+.++.+. |-..|.|++.+|.-..|++++.|..+++||+++...+..+.||..+|.++.+.|-...+++|+.|++|++||
T Consensus 226 kvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWD 305 (460)
T KOG0285|consen 226 KVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWD 305 (460)
T ss_pred hhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEee
Confidence 9998887 899999999999999999999999999999999999999999999999999999888899999999999999
Q ss_pred ccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEecCC
Q 013184 349 VRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDRT 428 (448)
Q Consensus 349 ~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~ 428 (448)
++. ++...++..|...|++++.+|.-..+|+++.|. |+-|++..|..+..+.+|.+-|.+++...|| ++++|+. ..
T Consensus 306 l~a-gkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~d-ng 381 (460)
T KOG0285|consen 306 LRA-GKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGD-NG 381 (460)
T ss_pred ecc-CceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhccccccceeeeeeeccCc-eEEEcCC-ce
Confidence 998 888899999999999999999998999998885 9999999999888889999999999999886 5666654 44
Q ss_pred cceEEEEecccceEecccc
Q 013184 429 YGSLLQYNRCRNYTYLDTL 447 (448)
Q Consensus 429 ~~~ll~~~~~~~~~~l~~~ 447 (448)
+-.+..|..+++|+.+.++
T Consensus 382 ~~~fwdwksg~nyQ~~~t~ 400 (460)
T KOG0285|consen 382 SIMFWDWKSGHNYQRGQTI 400 (460)
T ss_pred EEEEEecCcCccccccccc
Confidence 4556667777777766543
No 24
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=1.3e-28 Score=244.71 Aligned_cols=266 Identities=21% Similarity=0.301 Sum_probs=222.2
Q ss_pred eeCCCCeEEEe-cCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCCCeEEEE
Q 013184 140 WSTSKHDVYLM-SHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQGELICK 216 (448)
Q Consensus 140 ~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~dg~i~vw 216 (448)
.++.+..+..+ .+..+++|++.+........+.||.. .|..+++ +++++++|+.|++|++|
T Consensus 167 fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~----------------~v~~~~fs~d~~~l~s~s~D~tiriw 230 (456)
T KOG0266|consen 167 FSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTR----------------GVSDVAFSPDGSYLLSGSDDKTLRIW 230 (456)
T ss_pred EcCCCCeEEEccCCCcEEEeecccccchhhcccccccc----------------ceeeeEECCCCcEEEEecCCceEEEe
Confidence 34555544444 57789999985543223334455554 4888888 88999999999999999
Q ss_pred EcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee-cCCCeeEEEECCCCCEEEE
Q 013184 217 YLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS-FPWPVNHTSLSPDGKLLVI 295 (448)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~ 295 (448)
++..... +.+....|...+.+++| +|.+ .++++|+.|++|+|||+++++++..+. |..+|++++|++++.+|++
T Consensus 231 d~~~~~~--~~~~l~gH~~~v~~~~f--~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s 305 (456)
T KOG0266|consen 231 DLKDDGR--NLKTLKGHSTYVTSVAF--SPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVS 305 (456)
T ss_pred eccCCCe--EEEEecCCCCceEEEEe--cCCC-CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEE
Confidence 9944332 24445567777777777 8998 699999999999999999999999999 9999999999999999999
Q ss_pred EecCCcEEEEECCCCc--eeEeeecCCCc--EEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCC---eEE
Q 013184 296 VGDNPEGILVDSQTGK--AIMPLCGHLDF--SFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGA---IRS 368 (448)
Q Consensus 296 ~~~d~~i~i~d~~~~~--~~~~l~~h~~~--v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~---v~~ 368 (448)
++.|+.|++||+.+++ ++..+.++... +.+++|+|++.+|+++..|+.+++||++. ..++....+|... +.+
T Consensus 306 ~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~-~~~~~~~~~~~~~~~~~~~ 384 (456)
T KOG0266|consen 306 ASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRS-GKSVGTYTGHSNLVRCIFS 384 (456)
T ss_pred cCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccC-CcceeeecccCCcceeEec
Confidence 9999999999999999 56777776655 99999999999999999999999999987 7888888888764 444
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecC-cCceEEEEEccCCCeEEEEEecC
Q 013184 369 IRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDF-FGEISGMTFSPDTEALFIGVWDR 427 (448)
Q Consensus 369 l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~-~~~v~~~~fspdg~~L~~~~~D~ 427 (448)
...++.|+++++|+.|+.|++||+.++..+..+.+| ...+..++++|...+++++++++
T Consensus 385 ~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~ 444 (456)
T KOG0266|consen 385 PTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEG 444 (456)
T ss_pred ccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCC
Confidence 556789999999999999999999998888889999 88999999999999999998543
No 25
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=1.3e-28 Score=244.66 Aligned_cols=232 Identities=23% Similarity=0.326 Sum_probs=201.3
Q ss_pred eeEEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEec-CCc
Q 013184 193 QVSTLAV--RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDM-ERF 269 (448)
Q Consensus 193 ~i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~-~~~ 269 (448)
.|.++.+ +|+.|++++.++.+++|.+..... ........|...+..++| +|++. ++++++.|++|+|||+ ..+
T Consensus 161 sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~~~l~~h~~~v~~~~f--s~d~~-~l~s~s~D~tiriwd~~~~~ 236 (456)
T KOG0266|consen 161 SVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-NLLRELSGHTRGVSDVAF--SPDGS-YLLSGSDDKTLRIWDLKDDG 236 (456)
T ss_pred ceEEEEEcCCCCeEEEccCCCcEEEeecccccc-hhhccccccccceeeeEE--CCCCc-EEEEecCCceEEEeeccCCC
Confidence 5777766 999999999999999999955442 112222566666777777 88887 9999999999999999 556
Q ss_pred eEEEEee-cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 013184 270 QLSKHFS-FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWD 348 (448)
Q Consensus 270 ~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd 348 (448)
..++++. |...|++++|+|+|+++++|+.|++|+|||+++++++..+.+|.+.|.+++|+++|++|++++.|+.|+|||
T Consensus 237 ~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd 316 (456)
T KOG0266|consen 237 RNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWD 316 (456)
T ss_pred eEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEE
Confidence 8888887 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCc--ceEEEccCCCC--eEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCc---eEEEEEccCCCeEE
Q 013184 349 VRNLSK--SVAVLKGNLGA--IRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGE---ISGMTFSPDTEALF 421 (448)
Q Consensus 349 ~~~~~~--~~~~~~~~~~~--v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~---v~~~~fspdg~~L~ 421 (448)
+.+ +. ++..+..+..+ +++++|+|+|.+|+++..|+.+++||+..+........|... +.+...++.|++++
T Consensus 317 ~~~-~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 395 (456)
T KOG0266|consen 317 LET-GSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIY 395 (456)
T ss_pred CCC-CceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEE
Confidence 987 55 46677776655 999999999999999999999999999999999888888764 45556688999999
Q ss_pred EEEecCCc
Q 013184 422 IGVWDRTY 429 (448)
Q Consensus 422 ~~~~D~~~ 429 (448)
+|+.|+.+
T Consensus 396 sg~~d~~v 403 (456)
T KOG0266|consen 396 SGSEDGSV 403 (456)
T ss_pred EEeCCceE
Confidence 99998654
No 26
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=1.3e-27 Score=254.37 Aligned_cols=270 Identities=11% Similarity=0.134 Sum_probs=211.7
Q ss_pred eeeeCCCCeEEEec-CCeEEEEecCCCcee------EEEecCCCCCCCCCCCCCcccCCcceeeEEEEe---cCCEEEEE
Q 013184 138 LVWSTSKHDVYLMS-HFSIVHWSSLSSKRT------EVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV---RDNLLIAG 207 (448)
Q Consensus 138 l~~~~~~~~v~~~~-~~~v~~w~~~~~~~~------~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~---~~~~lvsg 207 (448)
+-+.+.+..+++++ ++.|++|+..+.... .+..+. ....|.++++ .+++|++|
T Consensus 489 i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-----------------~~~~v~~l~~~~~~~~~las~ 551 (793)
T PLN00181 489 IGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-----------------SRSKLSGICWNSYIKSQVASS 551 (793)
T ss_pred EEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-----------------ccCceeeEEeccCCCCEEEEE
Confidence 34556666666654 678999996431100 011111 1224677777 46899999
Q ss_pred eCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEeecCCCeeEEEEC
Q 013184 208 GFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFSFPWPVNHTSLS 287 (448)
Q Consensus 208 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~s 287 (448)
+.||+|++|++.+.... .....|...+.++.+ +|.+..+|++|+.|+.|++||+.+++.+..+.+...|.++.|+
T Consensus 552 ~~Dg~v~lWd~~~~~~~---~~~~~H~~~V~~l~~--~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~ 626 (793)
T PLN00181 552 NFEGVVQVWDVARSQLV---TEMKEHEKRVWSIDY--SSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFP 626 (793)
T ss_pred eCCCeEEEEECCCCeEE---EEecCCCCCEEEEEE--cCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEe
Confidence 99999999999875432 233456666777776 7644458999999999999999999988888877789999995
Q ss_pred -CCCCEEEEEecCCcEEEEECCCCc-eeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCC-----CcceEEEc
Q 013184 288 -PDGKLLVIVGDNPEGILVDSQTGK-AIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNL-----SKSVAVLK 360 (448)
Q Consensus 288 -p~~~~l~~~~~d~~i~i~d~~~~~-~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~-----~~~~~~~~ 360 (448)
+++.+|++|+.|+.|++||+++++ .+..+.+|...|.++.|. ++.+|++++.|++|+|||++.. ..++..+.
T Consensus 627 ~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~ 705 (793)
T PLN00181 627 SESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFM 705 (793)
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEc
Confidence 579999999999999999998876 567788999999999997 6889999999999999999742 25678899
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeee-------------ecCcCceEEEEEccCCCeEEEEEecC
Q 013184 361 GNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQE-------------IDFFGEISGMTFSPDTEALFIGVWDR 427 (448)
Q Consensus 361 ~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~-------------~~~~~~v~~~~fspdg~~L~~~~~D~ 427 (448)
+|...+.+++|+|+|.+|++|+.|+.|+||+......+... ..+...|.+++|+|++..|++|+.||
T Consensus 706 gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG 785 (793)
T PLN00181 706 GHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTG 785 (793)
T ss_pred CCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCC
Confidence 99999999999999999999999999999997655332111 12345699999999999999999998
Q ss_pred Ccc
Q 013184 428 TYG 430 (448)
Q Consensus 428 ~~~ 430 (448)
++.
T Consensus 786 ~I~ 788 (793)
T PLN00181 786 NIK 788 (793)
T ss_pred cEE
Confidence 765
No 27
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=6.3e-29 Score=235.68 Aligned_cols=277 Identities=14% Similarity=0.188 Sum_probs=230.0
Q ss_pred eeecccCCCCCcccccccceeeeCCCCeEEEecCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEE
Q 013184 119 FWRNTRSVKSTILHFQLRNLVWSTSKHDVYLMSHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLA 198 (448)
Q Consensus 119 f~~~~~~~~~~~~hfq~r~l~~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~ 198 (448)
|+..+.+||+.-.|+.-..++.+ --++.|.+||..+......+.+. ..+|.+..
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~--------LynG~V~IWnyetqtmVksfeV~------------------~~PvRa~k 62 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAA--------LYNGDVQIWNYETQTMVKSFEVS------------------EVPVRAAK 62 (794)
T ss_pred hhccCCceeeeecCCCCceEEEe--------eecCeeEEEecccceeeeeeeec------------------ccchhhhe
Confidence 33455567765566555444332 13577999999886665555443 22466666
Q ss_pred e--cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCC-ceEEEEe
Q 013184 199 V--RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMER-FQLSKHF 275 (448)
Q Consensus 199 ~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~-~~~~~~~ 275 (448)
+ ..+.+++|+.|+.|+|++.++.... .....|...+.++.+ +|... +++++|.|-+|++||.+. ..+.++|
T Consensus 63 fiaRknWiv~GsDD~~IrVfnynt~ekV---~~FeAH~DyIR~iav--HPt~P-~vLtsSDDm~iKlW~we~~wa~~qtf 136 (794)
T KOG0276|consen 63 FIARKNWIVTGSDDMQIRVFNYNTGEKV---KTFEAHSDYIRSIAV--HPTLP-YVLTSSDDMTIKLWDWENEWACEQTF 136 (794)
T ss_pred eeeccceEEEecCCceEEEEecccceee---EEeeccccceeeeee--cCCCC-eEEecCCccEEEEeeccCceeeeeEE
Confidence 6 7789999999999999999987753 344566777788877 88876 899999999999999875 5677888
Q ss_pred e-cCCCeeEEEECC-CCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCC--CEEEEEeCCCcEEEEEccC
Q 013184 276 S-FPWPVNHTSLSP-DGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDG--RIFATGNQDKTCRVWDVRN 351 (448)
Q Consensus 276 ~-~~~~v~~~~~sp-~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g--~~l~s~~~d~~i~iwd~~~ 351 (448)
+ |...|.+++|+| |.+.+|+++-|++|++|.+.+..+..++++|...|.++.+-|-| .+|+||+.|.+|+|||..+
T Consensus 137 eGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt 216 (794)
T KOG0276|consen 137 EGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQT 216 (794)
T ss_pred cCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecch
Confidence 8 999999999999 88899999999999999999999999999999999999998744 6999999999999999987
Q ss_pred CCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEecCC
Q 013184 352 LSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDRT 428 (448)
Q Consensus 352 ~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~ 428 (448)
..|++++.+|...|..+.|+|.=..+++|+.||+|+||+..+-+....+.-..+.|++|+-.+.+..+++|..++.
T Consensus 217 -k~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~ 292 (794)
T KOG0276|consen 217 -KSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGS 292 (794)
T ss_pred -HHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCc
Confidence 9999999999999999999999999999999999999998887666666666688999999998888888876654
No 28
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=6.6e-29 Score=212.11 Aligned_cols=260 Identities=20% Similarity=0.238 Sum_probs=211.1
Q ss_pred EecCCeEEEEecC-CCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe---cCCEEEEEeCCCeEEEEEcCCCCce
Q 013184 149 LMSHFSIVHWSSL-SSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV---RDNLLIAGGFQGELICKYLDQPGVS 224 (448)
Q Consensus 149 ~~~~~~v~~w~~~-~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~---~~~~lvsg~~dg~i~vw~~~~~~~~ 224 (448)
+++++++.+.+.. .+...++..+. .+..+..+++ ..+.+++++-||++++|++..+..+
T Consensus 34 l~G~G~L~ile~~~~~gi~e~~s~d-----------------~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~P 96 (311)
T KOG0277|consen 34 LAGNGRLFILEVTDPKGIQECQSYD-----------------TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKP 96 (311)
T ss_pred cccCceEEEEecCCCCCeEEEEeee-----------------cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcc
Confidence 3456677777763 33444444333 1123566777 5688999999999999997665543
Q ss_pred eEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee-cCCCeeEEEECC-CCCEEEEEecCCcE
Q 013184 225 FCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS-FPWPVNHTSLSP-DGKLLVIVGDNPEG 302 (448)
Q Consensus 225 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp-~~~~l~~~~~d~~i 302 (448)
......|...+.++.+ ++..+..++++|.|++|++|+....+.+.++. |...|...+|+| .++++++++.|+.+
T Consensus 97 --i~~~kEH~~EV~Svdw--n~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l 172 (311)
T KOG0277|consen 97 --IHKFKEHKREVYSVDW--NTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTL 172 (311)
T ss_pred --hhHHHhhhhheEEecc--ccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceE
Confidence 3445566666777777 77777789999999999999999998888888 899999999999 78899999999999
Q ss_pred EEEECCCCceeEeeecCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCC-CEEEE
Q 013184 303 ILVDSQTGKAIMPLCGHLDFSFASAWHP-DGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDG-NFMAM 380 (448)
Q Consensus 303 ~i~d~~~~~~~~~l~~h~~~v~~~~~~p-~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g-~~l~s 380 (448)
++||++..-....+..|...+.++.|+. +.+.++||+.|+.||+||+|+...++.++.+|.-+|+.++|||.. ..||+
T Consensus 173 ~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaS 252 (311)
T KOG0277|consen 173 RLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLAS 252 (311)
T ss_pred EEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhh
Confidence 9999986544445889999999999998 778999999999999999999899999999999999999999965 68899
Q ss_pred EeCCCeEEEEECCCCc-eeeeeecCcCceEEEEEcc-CCCeEEEEEecCCc
Q 013184 381 AEPADFVHVYDAKNGF-EKEQEIDFFGEISGMTFSP-DTEALFIGVWDRTY 429 (448)
Q Consensus 381 ~~~d~~v~vwd~~~~~-~~~~~~~~~~~v~~~~fsp-dg~~L~~~~~D~~~ 429 (448)
++.|=+++|||...+. .+.+..-|..-|.++.||+ ++.++|+++||..+
T Consensus 253 asYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l 303 (311)
T KOG0277|consen 253 ASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELL 303 (311)
T ss_pred ccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccce
Confidence 9999999999987544 3344445777899999998 57799999999653
No 29
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=4.7e-28 Score=216.67 Aligned_cols=280 Identities=18% Similarity=0.222 Sum_probs=215.3
Q ss_pred CcceeeecccCCCCCcccccccceeeeCCCCeEEEecCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceee
Q 013184 115 KYYEFWRNTRSVKSTILHFQLRNLVWSTSKHDVYLMSHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQV 194 (448)
Q Consensus 115 ~~~~f~~~~~~~~~~~~hfq~r~l~~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i 194 (448)
..-.|.+|+..+-+...|+ -.++++.-.. +..-.+|+..++. ....+.||.. .|
T Consensus 56 S~~tF~~H~~svFavsl~P-~~~l~aTGGg-------DD~AflW~~~~ge--~~~eltgHKD----------------SV 109 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHP-NNNLVATGGG-------DDLAFLWDISTGE--FAGELTGHKD----------------SV 109 (399)
T ss_pred ceeehhhcCCceEEEEeCC-CCceEEecCC-------CceEEEEEccCCc--ceeEecCCCC----------------ce
Confidence 3445777877776645554 2222222222 3345599987765 5556777776 48
Q ss_pred EEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEE
Q 013184 195 STLAV--RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLS 272 (448)
Q Consensus 195 ~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~ 272 (448)
+++.| ++.+||+|+.+|.|+||...++.... .+...-..+ ..+.++|.+. +|++|+.||.|.+|.+..+...
T Consensus 110 t~~~FshdgtlLATGdmsG~v~v~~~stg~~~~--~~~~e~~di---eWl~WHp~a~-illAG~~DGsvWmw~ip~~~~~ 183 (399)
T KOG0296|consen 110 TCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQW--KLDQEVEDI---EWLKWHPRAH-ILLAGSTDGSVWMWQIPSQALC 183 (399)
T ss_pred EEEEEccCceEEEecCCCccEEEEEcccCceEE--EeecccCce---EEEEeccccc-EEEeecCCCcEEEEECCCccee
Confidence 88888 99999999999999999998877542 222222222 2334578654 8999999999999999987777
Q ss_pred EEee-cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeec---------------------------------
Q 013184 273 KHFS-FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCG--------------------------------- 318 (448)
Q Consensus 273 ~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~--------------------------------- 318 (448)
+.+. |..++++=.|.|+|+.++++..||+|++|++.++++++.+.+
T Consensus 184 kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~ 263 (399)
T KOG0296|consen 184 KVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNG 263 (399)
T ss_pred eEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccc
Confidence 7777 999999999999999999999999999999999987766541
Q ss_pred ------------------CCCcEEEE---EEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCE
Q 013184 319 ------------------HLDFSFAS---AWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNF 377 (448)
Q Consensus 319 ------------------h~~~v~~~---~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~ 377 (448)
+...+.++ .|+..-.+.|+|+-||+|-|||+.. ..++..-.|..+|..+.|-+ ..+
T Consensus 264 sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~--~~~R~~c~he~~V~~l~w~~-t~~ 340 (399)
T KOG0296|consen 264 SGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAA--STLRHICEHEDGVTKLKWLN-TDY 340 (399)
T ss_pred cceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEeccc--chhheeccCCCceEEEEEcC-cch
Confidence 00111122 2222335688899999999999974 44455556888999999998 789
Q ss_pred EEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEecCCc
Q 013184 378 MAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDRTY 429 (448)
Q Consensus 378 l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~~ 429 (448)
|++++.+|.|+.||.++|+++..+.+|...|..++++|+++++++++.|.+.
T Consensus 341 l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a 392 (399)
T KOG0296|consen 341 LLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTA 392 (399)
T ss_pred heeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeE
Confidence 9999999999999999999999999999999999999999999999998653
No 30
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=2.6e-30 Score=229.50 Aligned_cols=243 Identities=17% Similarity=0.253 Sum_probs=202.7
Q ss_pred CCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEecCCEEEEEeCCCeEEEEEcCCCCceeEEEeec
Q 013184 152 HFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAVRDNLLIAGGFQGELICKYLDQPGVSFCSRTTY 231 (448)
Q Consensus 152 ~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~ 231 (448)
+++|++||..+ ..++..+.||.. .|.|+.++.+++++|+.|.+|++||++++.. ..+..
T Consensus 216 DnTikiWD~n~--~~c~~~L~GHtG----------------SVLCLqyd~rviisGSSDsTvrvWDv~tge~---l~tli 274 (499)
T KOG0281|consen 216 DNTIKIWDKNS--LECLKILTGHTG----------------SVLCLQYDERVIVSGSSDSTVRVWDVNTGEP---LNTLI 274 (499)
T ss_pred cCceEEecccc--HHHHHhhhcCCC----------------cEEeeeccceEEEecCCCceEEEEeccCCch---hhHHh
Confidence 67899999643 455556778887 4899999999999999999999999998874 33444
Q ss_pred CCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEE---EEee-cCCCeeEEEECCCCCEEEEEecCCcEEEEEC
Q 013184 232 DENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLS---KHFS-FPWPVNHTSLSPDGKLLVIVGDNPEGILVDS 307 (448)
Q Consensus 232 ~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~---~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~ 307 (448)
+|-..+..+.+ .+| ++++++.|.++.+||+..-..+ +.+. |...|+.+.|+ .+++++++.|.+|++|++
T Consensus 275 hHceaVLhlrf---~ng--~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~ 347 (499)
T KOG0281|consen 275 HHCEAVLHLRF---SNG--YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWST 347 (499)
T ss_pred hhcceeEEEEE---eCC--EEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEec
Confidence 56555556655 333 8999999999999999764422 2222 88899999996 679999999999999999
Q ss_pred CCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 013184 308 QTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFV 387 (448)
Q Consensus 308 ~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v 387 (448)
.+++.+.++.+|...|.|+.+ .|+++++|+.|.+||+||+.. +.++..+.+|..-|+++.|. .+.+++|+.||.|
T Consensus 348 st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~-G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGki 422 (499)
T KOG0281|consen 348 STCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIEC-GACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKI 422 (499)
T ss_pred cceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccc-cHHHHHHhchHHhhhheeec--CceeeeccccceE
Confidence 999999999999999999888 589999999999999999977 89999999999999999995 5789999999999
Q ss_pred EEEECCCCcee---------eeeecCcCceEEEEEccCCCeEEEEEecCCc
Q 013184 388 HVYDAKNGFEK---------EQEIDFFGEISGMTFSPDTEALFIGVWDRTY 429 (448)
Q Consensus 388 ~vwd~~~~~~~---------~~~~~~~~~v~~~~fspdg~~L~~~~~D~~~ 429 (448)
+|||+..+... ..+..|.|.|..+.|. ...+++++.|.++
T Consensus 423 kvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtI 471 (499)
T KOG0281|consen 423 KVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTI 471 (499)
T ss_pred EEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeE
Confidence 99999876533 3445688999999994 5678888888654
No 31
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=1.6e-27 Score=230.67 Aligned_cols=230 Identities=16% Similarity=0.261 Sum_probs=200.5
Q ss_pred eeeEEEEec--CCEEEEEeCC-CeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCC
Q 013184 192 TQVSTLAVR--DNLLIAGGFQ-GELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMER 268 (448)
Q Consensus 192 ~~i~~l~~~--~~~lvsg~~d-g~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~ 268 (448)
.+|.+++++ |..|+.|+.. |++.||++...... .+.. +|...+++++. +|+|. ++++|+.||+|+|||..+
T Consensus 308 ~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYV--lKQQ-gH~~~i~~l~Y--SpDgq-~iaTG~eDgKVKvWn~~S 381 (893)
T KOG0291|consen 308 QKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYV--LKQQ-GHSDRITSLAY--SPDGQ-LIATGAEDGKVKVWNTQS 381 (893)
T ss_pred ceeeEEEecccCCEEEEcCCccceEEEEEeecccee--eecc-ccccceeeEEE--CCCCc-EEEeccCCCcEEEEeccC
Confidence 468899994 9999998765 99999999887643 3333 34444567766 99987 899999999999999999
Q ss_pred ceEEEEee-cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCC-CcEEEEEEcCCCCEEEEEeCCC-cEE
Q 013184 269 FQLSKHFS-FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHL-DFSFASAWHPDGRIFATGNQDK-TCR 345 (448)
Q Consensus 269 ~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~-~~v~~~~~~p~g~~l~s~~~d~-~i~ 345 (448)
+-+..+|. |...|+.+.|+..|+.+++.+-||+|+.||+...+..+++.... -...|++..|.|.++..|++|. .|.
T Consensus 382 gfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~If 461 (893)
T KOG0291|consen 382 GFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIF 461 (893)
T ss_pred ceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEE
Confidence 99999998 99999999999999999999999999999999999999887543 4566889999999999999986 599
Q ss_pred EEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEe
Q 013184 346 VWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVW 425 (448)
Q Consensus 346 iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~ 425 (448)
+|++.+ ++.+-.+.||.+||.+++|+|.|..||+++.|.+|++||+-..........+...+.+++|+|+|+.|+++..
T Consensus 462 vWS~qT-GqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTl 540 (893)
T KOG0291|consen 462 VWSVQT-GQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATL 540 (893)
T ss_pred EEEeec-CeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEe
Confidence 999987 9999999999999999999999999999999999999999776555555667788999999999999999998
Q ss_pred cCC
Q 013184 426 DRT 428 (448)
Q Consensus 426 D~~ 428 (448)
||.
T Consensus 541 dgq 543 (893)
T KOG0291|consen 541 DGQ 543 (893)
T ss_pred cce
Confidence 854
No 32
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.96 E-value=6.2e-28 Score=215.21 Aligned_cols=277 Identities=19% Similarity=0.272 Sum_probs=228.2
Q ss_pred ccccccceeeeCCCCeEEEe--cCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEE
Q 013184 131 LHFQLRNLVWSTSKHDVYLM--SHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIA 206 (448)
Q Consensus 131 ~hfq~r~l~~~~~~~~v~~~--~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvs 206 (448)
.|...-.++.....+..|.+ .|++|++||+.++.. .+.+.||+. .|..+++ ...+|++
T Consensus 149 gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~L--kltltGhi~----------------~vr~vavS~rHpYlFs 210 (460)
T KOG0285|consen 149 GHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQL--KLTLTGHIE----------------TVRGVAVSKRHPYLFS 210 (460)
T ss_pred hccceEEEEeeCCCceeEEecCCCceeEEEEcccCeE--EEeecchhh----------------eeeeeeecccCceEEE
Confidence 34443334555555655554 477899999987544 456677776 3677777 6789999
Q ss_pred EeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee-cCCCeeEEE
Q 013184 207 GGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS-FPWPVNHTS 285 (448)
Q Consensus 207 g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~ 285 (448)
++.|+.|+|||+...+.. +-..+|-..+.++.+ .|.-. .|++|+.|.++|+||+++...+..+. |..+|..+.
T Consensus 211 ~gedk~VKCwDLe~nkvI---R~YhGHlS~V~~L~l--hPTld-vl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~ 284 (460)
T KOG0285|consen 211 AGEDKQVKCWDLEYNKVI---RHYHGHLSGVYCLDL--HPTLD-VLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVM 284 (460)
T ss_pred ecCCCeeEEEechhhhhH---HHhccccceeEEEec--cccce-eEEecCCcceEEEeeecccceEEEecCCCCcceeEE
Confidence 999999999999987753 344556666778877 67665 89999999999999999999888888 999999999
Q ss_pred ECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCC
Q 013184 286 LSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGA 365 (448)
Q Consensus 286 ~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 365 (448)
+.|-...+++|+.|++|++||++.|+...++..|...|.+++.+|....||+++.|. |+-|++.. +..++.+.+|.+.
T Consensus 285 ~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~-g~f~~nlsgh~~i 362 (460)
T KOG0285|consen 285 CQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPE-GEFLQNLSGHNAI 362 (460)
T ss_pred eecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCc-cchhhccccccce
Confidence 999888999999999999999999999999999999999999999999999999985 99999977 6777779999999
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeee--c------CcCceEEEEEccCCCeEEEEEecCCcceEEE
Q 013184 366 IRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEI--D------FFGEISGMTFSPDTEALFIGVWDRTYGSLLQ 434 (448)
Q Consensus 366 v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~--~------~~~~v~~~~fspdg~~L~~~~~D~~~~~ll~ 434 (448)
|+++....|| ++++|+.+|.+.+||.++|....... . ....|...+|...|..|++|..|.++..+-+
T Consensus 363 intl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~ke 438 (460)
T KOG0285|consen 363 INTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKE 438 (460)
T ss_pred eeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEec
Confidence 9999998775 78899999999999999986543331 1 2245889999999999999999988765544
No 33
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.4e-28 Score=219.88 Aligned_cols=231 Identities=16% Similarity=0.263 Sum_probs=200.7
Q ss_pred eeEEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCC-c
Q 013184 193 QVSTLAV--RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMER-F 269 (448)
Q Consensus 193 ~i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~-~ 269 (448)
+|+.+-+ .--+.++++.|++|++||..++... ..+.+|.++ +..+.+ +..|. ++++++.|-.+++||..+ .
T Consensus 110 ~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e--~~LrGHt~s-v~di~~--~a~Gk-~l~tcSsDl~~~LWd~~~~~ 183 (406)
T KOG0295|consen 110 SVTRVIFHPSEALVVSASEDATIKVFDTETGELE--RSLRGHTDS-VFDISF--DASGK-YLATCSSDLSAKLWDFDTFF 183 (406)
T ss_pred ceeeeeeccCceEEEEecCCceEEEEEccchhhh--hhhhccccc-eeEEEE--ecCcc-EEEecCCccchhheeHHHHH
Confidence 4666666 4566788889999999999988762 334444444 555555 67775 999999999999999987 4
Q ss_pred eEEEEe-ecCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 013184 270 QLSKHF-SFPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWD 348 (448)
Q Consensus 270 ~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd 348 (448)
++++.. .|...|.+++|-|.|.++++++.|.+|+.|+..+|-++.++.+|...|..++.+.||.++|+++.|.++++|-
T Consensus 184 ~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~ 263 (406)
T KOG0295|consen 184 RCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWV 263 (406)
T ss_pred HHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEE
Confidence 444444 3888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcceEEEccCCCCeEEEEEcCC---------------CCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEE
Q 013184 349 VRNLSKSVAVLKGNLGAIRSIRFTSD---------------GNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTF 413 (448)
Q Consensus 349 ~~~~~~~~~~~~~~~~~v~~l~~sp~---------------g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~f 413 (448)
+.+ ..+...+..|.-+|-+++|-|. |+++++++.|++|++||+.++.++.++.+|...|.+++|
T Consensus 264 ~~t-~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af 342 (406)
T KOG0295|consen 264 VAT-KQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAF 342 (406)
T ss_pred ecc-chhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEE
Confidence 976 8888999999999999999871 369999999999999999999999999999999999999
Q ss_pred ccCCCeEEEEEecCCcc
Q 013184 414 SPDTEALFIGVWDRTYG 430 (448)
Q Consensus 414 spdg~~L~~~~~D~~~~ 430 (448)
+|-|+||+++..|++++
T Consensus 343 ~p~Gkyi~ScaDDktlr 359 (406)
T KOG0295|consen 343 SPGGKYILSCADDKTLR 359 (406)
T ss_pred cCCCeEEEEEecCCcEE
Confidence 99999999998887643
No 34
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.96 E-value=3.7e-27 Score=250.94 Aligned_cols=233 Identities=14% Similarity=0.119 Sum_probs=193.4
Q ss_pred eeEEEEe--cCCEEEEEeCCCeEEEEEcCCCC-----ceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEe
Q 013184 193 QVSTLAV--RDNLLIAGGFQGELICKYLDQPG-----VSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFD 265 (448)
Q Consensus 193 ~i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd 265 (448)
.|.++++ ++++|++|+.||.|++|++.... .........+ ...+..+++ ++....+|++++.||+|++||
T Consensus 485 ~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~-~~~v~~l~~--~~~~~~~las~~~Dg~v~lWd 561 (793)
T PLN00181 485 LVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS-RSKLSGICW--NSYIKSQVASSNFEGVVQVWD 561 (793)
T ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecc-cCceeeEEe--ccCCCCEEEEEeCCCeEEEEE
Confidence 5888988 78999999999999999975421 0001111112 233445544 665455899999999999999
Q ss_pred cCCceEEEEee-cCCCeeEEEECC-CCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEc-CCCCEEEEEeCCC
Q 013184 266 MERFQLSKHFS-FPWPVNHTSLSP-DGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWH-PDGRIFATGNQDK 342 (448)
Q Consensus 266 ~~~~~~~~~~~-~~~~v~~~~~sp-~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~-p~g~~l~s~~~d~ 342 (448)
+.+++.+..+. |...|++++|+| ++.+|++++.|+.|++||++++..+..+..+ ..+.++.|+ ++|.+|++|+.|+
T Consensus 562 ~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg 640 (793)
T PLN00181 562 VARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADH 640 (793)
T ss_pred CCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCC
Confidence 99998888887 899999999997 7899999999999999999999998888754 678999995 5799999999999
Q ss_pred cEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC------ceeeeeecCcCceEEEEEccC
Q 013184 343 TCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNG------FEKEQEIDFFGEISGMTFSPD 416 (448)
Q Consensus 343 ~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~------~~~~~~~~~~~~v~~~~fspd 416 (448)
.|++||+++...++..+.+|...|.+++|. ++.+|++++.|+.|+|||+..+ ..+..+.+|...+..++|+|+
T Consensus 641 ~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~ 719 (793)
T PLN00181 641 KVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVS 719 (793)
T ss_pred eEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCC
Confidence 999999987555677888999999999997 6889999999999999999743 456677789999999999999
Q ss_pred CCeEEEEEecCCcc
Q 013184 417 TEALFIGVWDRTYG 430 (448)
Q Consensus 417 g~~L~~~~~D~~~~ 430 (448)
+.+|++|+.|+++.
T Consensus 720 ~~~lasgs~D~~v~ 733 (793)
T PLN00181 720 DGYIATGSETNEVF 733 (793)
T ss_pred CCEEEEEeCCCEEE
Confidence 99999999997643
No 35
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.96 E-value=1.5e-26 Score=215.76 Aligned_cols=268 Identities=19% Similarity=0.308 Sum_probs=213.9
Q ss_pred cceeeeCCCCeEEEecCC-----eEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe---cCCEEEEE
Q 013184 136 RNLVWSTSKHDVYLMSHF-----SIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV---RDNLLIAG 207 (448)
Q Consensus 136 r~l~~~~~~~~v~~~~~~-----~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~---~~~~lvsg 207 (448)
..+-|.....+|...+++ .+..||.-+ .+=++.||.. .|.++++ ..-++++|
T Consensus 107 ~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~----SvGei~GhSr----------------~ins~~~KpsRPfRi~T~ 166 (603)
T KOG0318|consen 107 KDISWDFDSKRIAAVGEGRERFGHVFLWDSGN----SVGEITGHSR----------------RINSVDFKPSRPFRIATG 166 (603)
T ss_pred ccceeCCCCcEEEEEecCccceeEEEEecCCC----ccceeeccce----------------eEeeeeccCCCceEEEec
Confidence 467788888888887655 366777532 2234456554 5888888 44689999
Q ss_pred eCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee----cCCCeeE
Q 013184 208 GFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS----FPWPVNH 283 (448)
Q Consensus 208 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~----~~~~v~~ 283 (448)
+.|+.|.++.= +-.++ ......|...++++.+ +|+|. ++++++.||++.+||-.+++.+..+. |.+.|.+
T Consensus 167 sdDn~v~ffeG--PPFKF-k~s~r~HskFV~~VRy--sPDG~-~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfa 240 (603)
T KOG0318|consen 167 SDDNTVAFFEG--PPFKF-KSSFREHSKFVNCVRY--SPDGS-RFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFA 240 (603)
T ss_pred cCCCeEEEeeC--CCeee-eecccccccceeeEEE--CCCCC-eEEEecCCccEEEEcCCCccEEEEecCCCCccccEEE
Confidence 99999999862 22222 2234566778899988 99987 89999999999999999999998887 8999999
Q ss_pred EEECCCCCEEEEEecCCcEEEEECCCCce-------------------------------------------eEeeecCC
Q 013184 284 TSLSPDGKLLVIVGDNPEGILVDSQTGKA-------------------------------------------IMPLCGHL 320 (448)
Q Consensus 284 ~~~sp~~~~l~~~~~d~~i~i~d~~~~~~-------------------------------------------~~~l~~h~ 320 (448)
++|+||++.+++++.|.+++|||+.+.++ +..+.||.
T Consensus 241 lsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHn 320 (603)
T KOG0318|consen 241 LSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHN 320 (603)
T ss_pred EEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccc
Confidence 99999999999999999999999976532 23455899
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCcEEEEEccCC------------------------------------------------
Q 013184 321 DFSFASAWHPDGRIFATGNQDKTCRVWDVRNL------------------------------------------------ 352 (448)
Q Consensus 321 ~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~------------------------------------------------ 352 (448)
..|++++.+|++.+|++|+.||.|.-|+....
T Consensus 321 K~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~ 400 (603)
T KOG0318|consen 321 KSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSE 400 (603)
T ss_pred cceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccc
Confidence 99999999999999999999999999986421
Q ss_pred -------------------------------------------------------------------------C---cce
Q 013184 353 -------------------------------------------------------------------------S---KSV 356 (448)
Q Consensus 353 -------------------------------------------------------------------------~---~~~ 356 (448)
+ ...
T Consensus 401 ~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee 480 (603)
T KOG0318|consen 401 VVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEE 480 (603)
T ss_pred eeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccce
Confidence 0 011
Q ss_pred EEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeec-CcCceEEEEEccCCCeEEEEEecCCc
Q 013184 357 AVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEID-FFGEISGMTFSPDTEALFIGVWDRTY 429 (448)
Q Consensus 357 ~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~-~~~~v~~~~fspdg~~L~~~~~D~~~ 429 (448)
..+..|.++|++++|||||.|||++...+.|.+||+.+.+....... |.+.|.+++|+|+.+.||+|+.|..+
T Consensus 481 ~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~V 554 (603)
T KOG0318|consen 481 AKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNV 554 (603)
T ss_pred eeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceE
Confidence 12334677899999999999999999999999999998876444334 88999999999999999999999653
No 36
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=1.7e-27 Score=230.38 Aligned_cols=268 Identities=18% Similarity=0.205 Sum_probs=224.1
Q ss_pred ceeeeCCCCeEEEecCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCCCeEE
Q 013184 137 NLVWSTSKHDVYLMSHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQGELI 214 (448)
Q Consensus 137 ~l~~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~dg~i~ 214 (448)
.+-.+.++.-++.+++++|++|+..+ .+++..+.- ..+.+..| .++++++|...|.+.
T Consensus 378 sl~vS~d~~~~~Sga~~SikiWn~~t--~kciRTi~~------------------~y~l~~~Fvpgd~~Iv~G~k~Gel~ 437 (888)
T KOG0306|consen 378 SLCVSSDSILLASGAGESIKIWNRDT--LKCIRTITC------------------GYILASKFVPGDRYIVLGTKNGELQ 437 (888)
T ss_pred EEEeecCceeeeecCCCcEEEEEccC--cceeEEecc------------------ccEEEEEecCCCceEEEeccCCceE
Confidence 33333444444445678999999865 445544431 12444444 789999999999999
Q ss_pred EEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCC-----ce--------EEEEeecCCCe
Q 013184 215 CKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMER-----FQ--------LSKHFSFPWPV 281 (448)
Q Consensus 215 vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~-----~~--------~~~~~~~~~~v 281 (448)
++++...... .....|.+.+..++. +|++. .+++||.|.+|++||..- +. ..++++.+..|
T Consensus 438 vfdlaS~~l~---Eti~AHdgaIWsi~~--~pD~~-g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddv 511 (888)
T KOG0306|consen 438 VFDLASASLV---ETIRAHDGAIWSISL--SPDNK-GFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDV 511 (888)
T ss_pred EEEeehhhhh---hhhhccccceeeeee--cCCCC-ceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccE
Confidence 9999876643 233367788888888 78876 899999999999998742 11 11345567889
Q ss_pred eEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEcc
Q 013184 282 NHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKG 361 (448)
Q Consensus 282 ~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 361 (448)
.|+++||||++|+++--|.+|++|-+.+-+...++.||.-+|.|+..+||+++++||+.|++|+||-+.- +.|-+.+.+
T Consensus 512 L~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdF-GDCHKS~fA 590 (888)
T KOG0306|consen 512 LCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDF-GDCHKSFFA 590 (888)
T ss_pred EEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEecccc-chhhhhhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999964 899999999
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEecCCcce
Q 013184 362 NLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDRTYGS 431 (448)
Q Consensus 362 ~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~~~~ 431 (448)
|...|.++.|-|...++.+++.|+.|+-||-..-..+..+.+|...|++++.+|+|.++++++.|.+++-
T Consensus 591 HdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRl 660 (888)
T KOG0306|consen 591 HDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRL 660 (888)
T ss_pred ccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEe
Confidence 9999999999999999999999999999999888889999999999999999999999999999977653
No 37
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=6.4e-27 Score=200.75 Aligned_cols=269 Identities=17% Similarity=0.248 Sum_probs=225.3
Q ss_pred cceeeeCCCCeEEEe-cCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe---cCCEEEEEeCCC
Q 013184 136 RNLVWSTSKHDVYLM-SHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV---RDNLLIAGGFQG 211 (448)
Q Consensus 136 r~l~~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~---~~~~lvsg~~dg 211 (448)
+.+-|...+..+... .+.++.+|++...+...-....||... |--+++ ...+|++++.|.
T Consensus 24 ~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~s----------------vdql~w~~~~~d~~atas~dk 87 (313)
T KOG1407|consen 24 HSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDS----------------VDQLCWDPKHPDLFATASGDK 87 (313)
T ss_pred eEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcc----------------hhhheeCCCCCcceEEecCCc
Confidence 445566677666665 577899999877655555566676643 333444 678999999999
Q ss_pred eEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEeecCCCeeEEEECCCCC
Q 013184 212 ELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFSFPWPVNHTSLSPDGK 291 (448)
Q Consensus 212 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~ 291 (448)
+|++|++...+........ .+ -+-+.++|+|+ ++++++.|..|...|.++.++....++...++-++|+-++.
T Consensus 88 ~ir~wd~r~~k~~~~i~~~---~e---ni~i~wsp~g~-~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd 160 (313)
T KOG1407|consen 88 TIRIWDIRSGKCTARIETK---GE---NINITWSPDGE-YIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSND 160 (313)
T ss_pred eEEEEEeccCcEEEEeecc---Cc---ceEEEEcCCCC-EEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCC
Confidence 9999999887654222221 11 22334489987 89999999999999999999999999888999999998888
Q ss_pred EEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEEEE
Q 013184 292 LLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRF 371 (448)
Q Consensus 292 ~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~ 371 (448)
+++.....|.|.|.....-++++.+++|.....|+.|+|+|++||+|+.|-.+.+||+.. --|++.+.-+.-+|+.+.|
T Consensus 161 ~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~E-LiC~R~isRldwpVRTlSF 239 (313)
T KOG1407|consen 161 LFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDE-LICERCISRLDWPVRTLSF 239 (313)
T ss_pred EEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhH-hhhheeeccccCceEEEEe
Confidence 888888889999999999999999999999999999999999999999999999999976 6788899999999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEecCCc
Q 013184 372 TSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDRTY 429 (448)
Q Consensus 372 sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~~ 429 (448)
|.+|++||+|+.|-.|-|=++++|..+..+. +.++...++|+|....||-++.|..-
T Consensus 240 S~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~ddk~~ 296 (313)
T KOG1407|consen 240 SHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDDKDG 296 (313)
T ss_pred ccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecCCCC
Confidence 9999999999999999999999999887665 78999999999999999998887653
No 38
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=5.2e-27 Score=201.89 Aligned_cols=233 Identities=15% Similarity=0.183 Sum_probs=201.0
Q ss_pred eEEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceE
Q 013184 194 VSTLAV--RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQL 271 (448)
Q Consensus 194 i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~ 271 (448)
++-+.+ +|.+|++++.|....+|.-..++. .-...+|.+.+.++++ +.+ ..++++|+.|.++++||+++|+.
T Consensus 13 lTqiKyN~eGDLlFscaKD~~~~vw~s~nGer---lGty~GHtGavW~~Di--d~~-s~~liTGSAD~t~kLWDv~tGk~ 86 (327)
T KOG0643|consen 13 LTQIKYNREGDLLFSCAKDSTPTVWYSLNGER---LGTYDGHTGAVWCCDI--DWD-SKHLITGSADQTAKLWDVETGKQ 86 (327)
T ss_pred cceEEecCCCcEEEEecCCCCceEEEecCCce---eeeecCCCceEEEEEe--cCC-cceeeeccccceeEEEEcCCCcE
Confidence 778888 899999999999999998765553 3345577888889988 333 44899999999999999999999
Q ss_pred EEEeecCCCeeEEEECCCCCEEEEEec-----CCcEEEEECC-------CCceeEeeecCCCcEEEEEEcCCCCEEEEEe
Q 013184 272 SKHFSFPWPVNHTSLSPDGKLLVIVGD-----NPEGILVDSQ-------TGKAIMPLCGHLDFSFASAWHPDGRIFATGN 339 (448)
Q Consensus 272 ~~~~~~~~~v~~~~~sp~~~~l~~~~~-----d~~i~i~d~~-------~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~ 339 (448)
+..++.+.+|..+.|+++|++++...+ .+.|.++|++ ...+...+..+...++.+-|.|-+.+|++|.
T Consensus 87 la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Gh 166 (327)
T KOG0643|consen 87 LATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGH 166 (327)
T ss_pred EEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEec
Confidence 999999999999999999999888764 4678999988 4556778888889999999999999999999
Q ss_pred CCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCce----------------------
Q 013184 340 QDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFE---------------------- 397 (448)
Q Consensus 340 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~---------------------- 397 (448)
.+|.|.+||++++.+.+.....|...|+.++++|+..++++++.|.+-++||+.+...
T Consensus 167 e~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~V 246 (327)
T KOG0643|consen 167 EDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHV 246 (327)
T ss_pred CCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecccccceE
Confidence 9999999999986677788888999999999999999999999999999999865321
Q ss_pred ---------------------------------eeeeecCcCceEEEEEccCCCeEEEEEecCCcceE
Q 013184 398 ---------------------------------KEQEIDFFGEISGMTFSPDTEALFIGVWDRTYGSL 432 (448)
Q Consensus 398 ---------------------------------~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~~~~l 432 (448)
+....+|+|+|++++|+|+|+..++|+.||.++-.
T Consensus 247 ilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h 314 (327)
T KOG0643|consen 247 ILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLH 314 (327)
T ss_pred EecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEE
Confidence 12334799999999999999999999999876643
No 39
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=5.1e-27 Score=211.01 Aligned_cols=267 Identities=15% Similarity=0.171 Sum_probs=214.4
Q ss_pred eeeCCCCeEEEecCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe-----cCCEEEEEeCCCeE
Q 013184 139 VWSTSKHDVYLMSHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV-----RDNLLIAGGFQGEL 213 (448)
Q Consensus 139 ~~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~-----~~~~lvsg~~dg~i 213 (448)
+...+++.+--+-++.+++|+.. .+..+...||..| |.++++ ....|++++.|.++
T Consensus 111 v~~~~~~IltgsYDg~~riWd~~---Gk~~~~~~Ght~~----------------ik~v~~v~~n~~~~~fvsas~Dqtl 171 (423)
T KOG0313|consen 111 VKGASKWILTGSYDGTSRIWDLK---GKSIKTIVGHTGP----------------IKSVAWVIKNSSSCLFVSASMDQTL 171 (423)
T ss_pred hcccCceEEEeecCCeeEEEecC---CceEEEEecCCcc----------------eeeeEEEecCCccceEEEecCCceE
Confidence 33444443333458889999943 3566667788876 565555 22469999999999
Q ss_pred EEEEcCCCCcee-EEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCC------------------------
Q 013184 214 ICKYLDQPGVSF-CSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMER------------------------ 268 (448)
Q Consensus 214 ~vw~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~------------------------ 268 (448)
++|-++.+.... +.....+|.+.+.++.. .++|. .+++|+.|..|+||+.++
T Consensus 172 ~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv--~~sgt-r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~ 248 (423)
T KOG0313|consen 172 RLWKWNVGENKVKALKVCRGHKRSVDSVSV--DSSGT-RFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGG 248 (423)
T ss_pred EEEEecCchhhhhHHhHhcccccceeEEEe--cCCCC-eEEeecccceeeecccCCCccccccccchhhhhhhhhhhccc
Confidence 999998776322 22223377888888877 67766 899999999999999321
Q ss_pred -ceEEEEee-cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEE
Q 013184 269 -FQLSKHFS-FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRV 346 (448)
Q Consensus 269 -~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~i 346 (448)
+.++..+. |..+|.++.|++ ...+++++.|.+|+.||+.+++.+.++.+ ....+++..+|..++|++|+.|..+|+
T Consensus 249 ~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl 326 (423)
T KOG0313|consen 249 TRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRL 326 (423)
T ss_pred ccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceee
Confidence 11334444 899999999998 67899999999999999999999988874 567899999999999999999999999
Q ss_pred EEccCCCc--ceEEEccCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCCc-eeeeeecCcCceEEEEEccCCCeEEE
Q 013184 347 WDVRNLSK--SVAVLKGNLGAIRSIRFTSDG-NFMAMAEPADFVHVYDAKNGF-EKEQEIDFFGEISGMTFSPDTEALFI 422 (448)
Q Consensus 347 wd~~~~~~--~~~~~~~~~~~v~~l~~sp~g-~~l~s~~~d~~v~vwd~~~~~-~~~~~~~~~~~v~~~~fspdg~~L~~ 422 (448)
||.|+... ..+.+.+|.+.|.++.|+|.. ..|++|+.|+++++||+++.+ .++.+.+|...|.++.|+ .+..+++
T Consensus 327 ~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvS 405 (423)
T KOG0313|consen 327 WDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVS 405 (423)
T ss_pred cCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEe
Confidence 99998543 446788999999999999976 467889999999999999988 788899999999999998 5779999
Q ss_pred EEecCCcc
Q 013184 423 GVWDRTYG 430 (448)
Q Consensus 423 ~~~D~~~~ 430 (448)
|+.|.+++
T Consensus 406 GGaD~~l~ 413 (423)
T KOG0313|consen 406 GGADNKLR 413 (423)
T ss_pred ccCcceEE
Confidence 99997743
No 40
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.96 E-value=3e-26 Score=213.80 Aligned_cols=267 Identities=18% Similarity=0.259 Sum_probs=213.5
Q ss_pred CCCCeEEEecCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEecCCEEEEEeCCCeEEEEEcCCC
Q 013184 142 TSKHDVYLMSHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAVRDNLLIAGGFQGELICKYLDQP 221 (448)
Q Consensus 142 ~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~~~~~lvsg~~dg~i~vw~~~~~ 221 (448)
+..+.++|+.+.+|.+-++.......+.. +|..+ +.|.-.++.|-++++|...|+|+||+....
T Consensus 28 pkgd~ilY~nGksv~ir~i~~~~~~~iYt--EH~~~--------------vtVAkySPsG~yiASGD~sG~vRIWdtt~~ 91 (603)
T KOG0318|consen 28 PKGDNILYTNGKSVIIRNIDNPASVDIYT--EHAHQ--------------VTVAKYSPSGFYIASGDVSGKVRIWDTTQK 91 (603)
T ss_pred CCCCeEEEeCCCEEEEEECCCccceeeec--cccce--------------eEEEEeCCCceEEeecCCcCcEEEEeccCc
Confidence 55577888888888888876655544443 33221 234445558899999999999999998654
Q ss_pred CceeEEE-------------------------------------------eecCCCCceeeEEEEeCCCCCeeEEEEeCC
Q 013184 222 GVSFCSR-------------------------------------------TTYDENAITNAVEIYNSPSGGIHFMASNND 258 (448)
Q Consensus 222 ~~~~~~~-------------------------------------------~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d 258 (448)
...+... -..+|...++++.+ -|.-..++++|+.|
T Consensus 92 ~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~--KpsRPfRi~T~sdD 169 (603)
T KOG0318|consen 92 EHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDF--KPSRPFRIATGSDD 169 (603)
T ss_pred ceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccceeeccceeEeeeec--cCCCceEEEeccCC
Confidence 3211111 01234455566665 55556689999999
Q ss_pred CcEEEEecCCceEEEEee-cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeee---cCCCcEEEEEEcCCCCE
Q 013184 259 CGVRDFDMERFQLSKHFS-FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLC---GHLDFSFASAWHPDGRI 334 (448)
Q Consensus 259 g~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~---~h~~~v~~~~~~p~g~~ 334 (448)
++|.+|.-..++...++. |..-|+|+.|+|||.++++++.||++.+||-.+|+.+..+. +|.+.|++++|+||+..
T Consensus 170 n~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~ 249 (603)
T KOG0318|consen 170 NTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQ 249 (603)
T ss_pred CeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCce
Confidence 999999888888877777 88899999999999999999999999999999999999998 89999999999999999
Q ss_pred EEEEeCCCcEEEEEccCCCcceEEEccCCC---CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEE
Q 013184 335 FATGNQDKTCRVWDVRNLSKSVAVLKGNLG---AIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGM 411 (448)
Q Consensus 335 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~---~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~ 411 (448)
|+|++.|.+++|||+.. .+++.++..... .--.+.|. +..|++-+.+|+|.+++...+..+..+.+|...|+++
T Consensus 250 ~~T~SaDkt~KIWdVs~-~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaL 326 (603)
T KOG0318|consen 250 FLTVSADKTIKIWDVST-NSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITAL 326 (603)
T ss_pred EEEecCCceEEEEEeec-cceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheecccccceeEE
Confidence 99999999999999977 677777764332 22344565 5688899999999999999999888999999999999
Q ss_pred EEccCCCeEEEEEecCCc
Q 013184 412 TFSPDTEALFIGVWDRTY 429 (448)
Q Consensus 412 ~fspdg~~L~~~~~D~~~ 429 (448)
+.+|++++|++|++||.+
T Consensus 327 tv~~d~~~i~SgsyDG~I 344 (603)
T KOG0318|consen 327 TVSPDGKTIYSGSYDGHI 344 (603)
T ss_pred EEcCCCCEEEeeccCceE
Confidence 999999999999999654
No 41
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.96 E-value=2.6e-29 Score=223.12 Aligned_cols=223 Identities=14% Similarity=0.184 Sum_probs=198.3
Q ss_pred eeeEEEEecCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceE
Q 013184 192 TQVSTLAVRDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQL 271 (448)
Q Consensus 192 ~~i~~l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~ 271 (448)
..|.|+.+++..+++|..|.+|++||.+.- .|..+..+|.+.+.|+.+ ..+.+++|+.|.+|++||.+++++
T Consensus 198 kgVYClQYDD~kiVSGlrDnTikiWD~n~~---~c~~~L~GHtGSVLCLqy-----d~rviisGSSDsTvrvWDv~tge~ 269 (499)
T KOG0281|consen 198 KGVYCLQYDDEKIVSGLRDNTIKIWDKNSL---ECLKILTGHTGSVLCLQY-----DERVIVSGSSDSTVRVWDVNTGEP 269 (499)
T ss_pred CceEEEEecchhhhcccccCceEEeccccH---HHHHhhhcCCCcEEeeec-----cceEEEecCCCceEEEEeccCCch
Confidence 369999999999999999999999997664 345666778888878766 345899999999999999999999
Q ss_pred EEEee-cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCce---eEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEE
Q 013184 272 SKHFS-FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKA---IMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVW 347 (448)
Q Consensus 272 ~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~---~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iw 347 (448)
+.++- |...|..+.|+ ..++++++.|..+.+||+..... .+.+.||...|..+.|+ .++|++++.|.+|++|
T Consensus 270 l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW 345 (499)
T KOG0281|consen 270 LNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVW 345 (499)
T ss_pred hhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEE
Confidence 98876 88899999998 56999999999999999987653 35678999999999995 5699999999999999
Q ss_pred EccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEecC
Q 013184 348 DVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDR 427 (448)
Q Consensus 348 d~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~ 427 (448)
++.+ ...+.++.+|...|-|+.+ .|+++++|+.|.+|++||+..|.++..+.+|..-|.++.| |.+.+++|++||
T Consensus 346 ~~st-~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVSGaYDG 420 (499)
T KOG0281|consen 346 STST-CEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDG 420 (499)
T ss_pred eccc-eeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee--cCceeeeccccc
Confidence 9976 8999999999999988887 5899999999999999999999999999999999999999 468999999999
Q ss_pred Ccce
Q 013184 428 TYGS 431 (448)
Q Consensus 428 ~~~~ 431 (448)
+++.
T Consensus 421 kikv 424 (499)
T KOG0281|consen 421 KIKV 424 (499)
T ss_pred eEEE
Confidence 8764
No 42
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.96 E-value=2.7e-26 Score=213.33 Aligned_cols=230 Identities=26% Similarity=0.387 Sum_probs=196.8
Q ss_pred eeEEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCce
Q 013184 193 QVSTLAV--RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQ 270 (448)
Q Consensus 193 ~i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~ 270 (448)
+|+++++ ++++|++|+.+|.|.+|++...... . ....+...+..+.+ .|++. .+++++.+|.|++|++.+++
T Consensus 11 ~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~--~-~~~~~~~~i~~~~~--~~~~~-~l~~~~~~~~i~i~~~~~~~ 84 (289)
T cd00200 11 GVTCVAFSPDGKLLATGSGDGTIKVWDLETGELL--R-TLKGHTGPVRDVAA--SADGT-YLASGSSDKTIRLWDLETGE 84 (289)
T ss_pred CEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcE--E-EEecCCcceeEEEE--CCCCC-EEEEEcCCCeEEEEEcCccc
Confidence 5889988 6699999999999999999876532 2 22233344444444 77775 78999999999999999877
Q ss_pred EEEEee-cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 013184 271 LSKHFS-FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDV 349 (448)
Q Consensus 271 ~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~ 349 (448)
....+. +...+.++.|+|+++++++++.++.+.+||+.+++.+..+..|...+.+++|+|++.++++++.++.|++||+
T Consensus 85 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~ 164 (289)
T cd00200 85 CVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDL 164 (289)
T ss_pred ceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEc
Confidence 777776 7779999999999888888888999999999999999999899999999999999999999988999999999
Q ss_pred cCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEecCCc
Q 013184 350 RNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDRTY 429 (448)
Q Consensus 350 ~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~~ 429 (448)
+. .+.+..+..|...+.++.|+|+++.|++++.++.|++||+.++.....+..|...+.+++|+|++.++++++.|+.+
T Consensus 165 ~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i 243 (289)
T cd00200 165 RT-GKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTI 243 (289)
T ss_pred cc-cccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcE
Confidence 86 67788888898899999999999999999999999999999888887777888899999999998888887767553
No 43
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.9e-27 Score=225.61 Aligned_cols=231 Identities=15% Similarity=0.241 Sum_probs=202.4
Q ss_pred eeEEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCce
Q 013184 193 QVSTLAV--RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQ 270 (448)
Q Consensus 193 ~i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~ 270 (448)
+|.++.+ ....++++-.+|.|.||+.++......... ...++.+..|. +. ...+++|+.|..||||+..+++
T Consensus 15 RVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV---~~~PvRa~kfi--aR-knWiv~GsDD~~IrVfnynt~e 88 (794)
T KOG0276|consen 15 RVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEV---SEVPVRAAKFI--AR-KNWIVTGSDDMQIRVFNYNTGE 88 (794)
T ss_pred ceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeee---cccchhhheee--ec-cceEEEecCCceEEEEecccce
Confidence 5677766 667899999999999999988764332222 23334444442 22 2389999999999999999999
Q ss_pred EEEEee-cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCC-ceeEeeecCCCcEEEEEEcC-CCCEEEEEeCCCcEEEE
Q 013184 271 LSKHFS-FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTG-KAIMPLCGHLDFSFASAWHP-DGRIFATGNQDKTCRVW 347 (448)
Q Consensus 271 ~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~-~~~~~l~~h~~~v~~~~~~p-~g~~l~s~~~d~~i~iw 347 (448)
.+..|+ |+..|.|++.+|...+++++++|-.|++||-+.+ .+.+++.||..+|.+++|+| |.+.+|+++-|++|++|
T Consensus 89 kV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVW 168 (794)
T KOG0276|consen 89 KVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVW 168 (794)
T ss_pred eeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEE
Confidence 999999 9999999999999999999999999999998754 67889999999999999999 77899999999999999
Q ss_pred EccCCCcceEEEccCCCCeEEEEEcCCC--CEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEe
Q 013184 348 DVRNLSKSVAVLKGNLGAIRSIRFTSDG--NFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVW 425 (448)
Q Consensus 348 d~~~~~~~~~~~~~~~~~v~~l~~sp~g--~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~ 425 (448)
.+.. ..+..++.+|...|+|+.|-+-| .||++|+.|.+|+|||.++..++.++.+|...|+.++|+|.=..+++|+.
T Consensus 169 slgs-~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsE 247 (794)
T KOG0276|consen 169 SLGS-PHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSE 247 (794)
T ss_pred EcCC-CCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecC
Confidence 9976 78889999999999999998755 69999999999999999999999999999999999999999999999999
Q ss_pred cCCcc
Q 013184 426 DRTYG 430 (448)
Q Consensus 426 D~~~~ 430 (448)
||+++
T Consensus 248 DGTvr 252 (794)
T KOG0276|consen 248 DGTVR 252 (794)
T ss_pred CccEE
Confidence 99865
No 44
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=4e-27 Score=218.07 Aligned_cols=259 Identities=18% Similarity=0.244 Sum_probs=213.1
Q ss_pred CCeEEEecCCeEEEEecCCCceeEEE-ecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCCCeEEEEEcCC
Q 013184 144 KHDVYLMSHFSIVHWSSLSSKRTEVL-DVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQGELICKYLDQ 220 (448)
Q Consensus 144 ~~~v~~~~~~~v~~w~~~~~~~~~~~-~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~dg~i~vw~~~~ 220 (448)
.+++.+++.-.+.+++..+......+ .+. .-|+++.| +|++|++|...|.|+++|..+
T Consensus 39 P~d~aVt~S~rvqly~~~~~~~~k~~srFk-------------------~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~ 99 (487)
T KOG0310|consen 39 PYDFAVTSSVRVQLYSSVTRSVRKTFSRFK-------------------DVVYSVDFRSDGRLLAAGDESGHVKVFDMKS 99 (487)
T ss_pred CCceEEecccEEEEEecchhhhhhhHHhhc-------------------cceeEEEeecCCeEEEccCCcCcEEEecccc
Confidence 36788888888999997664333321 222 23778888 899999999999999999544
Q ss_pred CCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee-cCCCeeEEEECC-CCCEEEEEec
Q 013184 221 PGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS-FPWPVNHTSLSP-DGKLLVIVGD 298 (448)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp-~~~~l~~~~~ 298 (448)
.. ..+....|..++..+.+ +|.++..+++|+.|+.+++||+.+...+..+. |...|.|.+|+| ++.++++||.
T Consensus 100 r~---iLR~~~ah~apv~~~~f--~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsY 174 (487)
T KOG0310|consen 100 RV---ILRQLYAHQAPVHVTKF--SPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSY 174 (487)
T ss_pred HH---HHHHHhhccCceeEEEe--cccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCC
Confidence 21 13455677778878766 89999899999999999999999888654555 999999999999 5668999999
Q ss_pred CCcEEEEECCCC-ceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCE
Q 013184 299 NPEGILVDSQTG-KAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNF 377 (448)
Q Consensus 299 d~~i~i~d~~~~-~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~ 377 (448)
||.|++||+++. ..+.++. |..+|..+.+-|.|..|++++.. .|++||+-.+++.+..+..|...|+|+++..++..
T Consensus 175 Dg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~r 252 (487)
T KOG0310|consen 175 DGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAGGN-SVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTR 252 (487)
T ss_pred CceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcCCC-eEEEEEecCCceehhhhhcccceEEEEEeecCCce
Confidence 999999999987 5666665 99999999999999999998765 69999998766777777779999999999999999
Q ss_pred EEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEecCCc
Q 013184 378 MAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDRTY 429 (448)
Q Consensus 378 l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~~ 429 (448)
|++|+-|+.|+|||+.+.+.+.. ....++|.+|+.+|+++.+++|..||.+
T Consensus 253 LlS~sLD~~VKVfd~t~~Kvv~s-~~~~~pvLsiavs~dd~t~viGmsnGlv 303 (487)
T KOG0310|consen 253 LLSGSLDRHVKVFDTTNYKVVHS-WKYPGPVLSIAVSPDDQTVVIGMSNGLV 303 (487)
T ss_pred EeecccccceEEEEccceEEEEe-eecccceeeEEecCCCceEEEeccccee
Confidence 99999999999999766554443 4567999999999999999999988754
No 45
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.96 E-value=6.3e-27 Score=204.53 Aligned_cols=243 Identities=17% Similarity=0.188 Sum_probs=198.2
Q ss_pred eeEEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCce
Q 013184 193 QVSTLAV--RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQ 270 (448)
Q Consensus 193 ~i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~ 270 (448)
.|.++.| +|..|++||.|..|.+|++......+ . ....|.+.+..+.+ .++++ .+++++.|.+|+.||+++|+
T Consensus 49 eI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~-~-~lkgHsgAVM~l~~--~~d~s-~i~S~gtDk~v~~wD~~tG~ 123 (338)
T KOG0265|consen 49 EIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENF-W-VLKGHSGAVMELHG--MRDGS-HILSCGTDKTVRGWDAETGK 123 (338)
T ss_pred eEEEEEECCCCCeEeecCCcceEEEEeccccccce-e-eeccccceeEeeee--ccCCC-EEEEecCCceEEEEecccce
Confidence 5888888 89999999999999999976544322 2 22356666656655 77776 89999999999999999999
Q ss_pred EEEEee-cCCCeeEEEECCCC-CEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 013184 271 LSKHFS-FPWPVNHTSLSPDG-KLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWD 348 (448)
Q Consensus 271 ~~~~~~-~~~~v~~~~~sp~~-~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd 348 (448)
..+.++ |..-|+.+.-+.-| .++.+++.|+++++||+++...++++. ....++++.|...+..+.+|+-|+.|++||
T Consensus 124 ~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd 202 (338)
T KOG0265|consen 124 RIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWD 202 (338)
T ss_pred eeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccccCceeeec
Confidence 999888 88889988854434 466788899999999999998888775 467899999999999999999999999999
Q ss_pred ccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC----ceeeeeecC--c--CceEEEEEccCCCeE
Q 013184 349 VRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNG----FEKEQEIDF--F--GEISGMTFSPDTEAL 420 (448)
Q Consensus 349 ~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~----~~~~~~~~~--~--~~v~~~~fspdg~~L 420 (448)
+|+ .....++.+|..+|+.+..+|+|.++.+-+.|.+|++||++-. .++..+.+| . .....++|+|++.++
T Consensus 203 ~r~-~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i 281 (338)
T KOG0265|consen 203 LRK-NDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKI 281 (338)
T ss_pred ccc-CcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCcc
Confidence 998 8899999999999999999999999999999999999998743 224444443 2 235678999999999
Q ss_pred EEEEe-------cCCcceEEEEecccceE
Q 013184 421 FIGVW-------DRTYGSLLQYNRCRNYT 442 (448)
Q Consensus 421 ~~~~~-------D~~~~~ll~~~~~~~~~ 442 (448)
.+|+. |.+.++++....+|...
T Consensus 282 ~ags~dr~vyvwd~~~r~~lyklpGh~gs 310 (338)
T KOG0265|consen 282 TAGSADRFVYVWDTTSRRILYKLPGHYGS 310 (338)
T ss_pred ccccccceEEEeecccccEEEEcCCccee
Confidence 88855 44556666666666554
No 46
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=7.8e-26 Score=224.37 Aligned_cols=223 Identities=15% Similarity=0.184 Sum_probs=179.8
Q ss_pred eeeEEEEe---cCCEEEEEeCCCeEEEEEcCCCCce----eEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEE
Q 013184 192 TQVSTLAV---RDNLLIAGGFQGELICKYLDQPGVS----FCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDF 264 (448)
Q Consensus 192 ~~i~~l~~---~~~~lvsg~~dg~i~vw~~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iw 264 (448)
..|.++++ ++++|++|+.||+|++|++...+.. ........|...+.++.| +|.+..+|++|+.|++|+||
T Consensus 76 ~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f--~P~~~~iLaSgs~DgtVrIW 153 (493)
T PTZ00421 76 GPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSF--HPSAMNVLASAGADMVVNVW 153 (493)
T ss_pred CCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEe--CcCCCCEEEEEeCCCEEEEE
Confidence 36899988 4689999999999999999765321 112233456666777766 88876689999999999999
Q ss_pred ecCCceEEEEee-cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCc-EEEEEEcCCCCEEEEEe---
Q 013184 265 DMERFQLSKHFS-FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDF-SFASAWHPDGRIFATGN--- 339 (448)
Q Consensus 265 d~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~-v~~~~~~p~g~~l~s~~--- 339 (448)
|+++++.+..+. |...|.+++|+|+|.+|++++.|+.|++||+++++.+..+.+|... +..+.|.|++..+++++
T Consensus 154 Dl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~ 233 (493)
T PTZ00421 154 DVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSK 233 (493)
T ss_pred ECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCC
Confidence 999999888887 8899999999999999999999999999999999999999999765 45678999888777654
Q ss_pred -CCCcEEEEEccCCCcceEEEccCC-CCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCceeeeeec-CcCceEEEEEcc
Q 013184 340 -QDKTCRVWDVRNLSKSVAVLKGNL-GAIRSIRFTSDGNFMAMAE-PADFVHVYDAKNGFEKEQEID-FFGEISGMTFSP 415 (448)
Q Consensus 340 -~d~~i~iwd~~~~~~~~~~~~~~~-~~v~~l~~sp~g~~l~s~~-~d~~v~vwd~~~~~~~~~~~~-~~~~v~~~~fsp 415 (448)
.|+.|++||+++...++.....+. ..+....|++++.+|++++ .|+.|++||+.++........ +..++.+++|.|
T Consensus 234 s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~p 313 (493)
T PTZ00421 234 SQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMP 313 (493)
T ss_pred CCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecc
Confidence 478999999998666666554433 4566678999999999887 599999999998876654332 445688899988
Q ss_pred C
Q 013184 416 D 416 (448)
Q Consensus 416 d 416 (448)
.
T Consensus 314 k 314 (493)
T PTZ00421 314 K 314 (493)
T ss_pred c
Confidence 4
No 47
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=6.1e-26 Score=195.75 Aligned_cols=233 Identities=15% Similarity=0.166 Sum_probs=195.1
Q ss_pred eeEEEEec---CCEEEEEeCCCeEEEEEcCCCCceeEE-EeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCC
Q 013184 193 QVSTLAVR---DNLLIAGGFQGELICKYLDQPGVSFCS-RTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMER 268 (448)
Q Consensus 193 ~i~~l~~~---~~~lvsg~~dg~i~vw~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~ 268 (448)
+|..+++. |.+|++||.|..|++|+......-.|. .+...|...+..+++ +|.|+ +|++||-|.++.||.-..
T Consensus 16 r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAw--sp~g~-~La~aSFD~t~~Iw~k~~ 92 (312)
T KOG0645|consen 16 RVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAW--SPHGR-YLASASFDATVVIWKKED 92 (312)
T ss_pred cEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeee--cCCCc-EEEEeeccceEEEeecCC
Confidence 58888882 458999999999999999854433333 344566777777776 89987 999999999999997654
Q ss_pred --ceEEEEee-cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCC---ceeEeeecCCCcEEEEEEcCCCCEEEEEeCCC
Q 013184 269 --FQLSKHFS-FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTG---KAIMPLCGHLDFSFASAWHPDGRIFATGNQDK 342 (448)
Q Consensus 269 --~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~---~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~ 342 (448)
++++..++ |...|.|++|+++|.+||+++.|..|.||.+..+ .++..|+.|...|..+.|||...+|++++.|.
T Consensus 93 ~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDn 172 (312)
T KOG0645|consen 93 GEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDN 172 (312)
T ss_pred CceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCC
Confidence 56778887 9999999999999999999999999999998744 46778999999999999999999999999999
Q ss_pred cEEEEEccC--CCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeE
Q 013184 343 TCRVWDVRN--LSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEAL 420 (448)
Q Consensus 343 ~i~iwd~~~--~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L 420 (448)
+|++|.-.. .-.+++++.+|.+.|.+++|+|.|..|++++.|++|+||-..+.- ...|.+++..++|. ...|
T Consensus 173 TIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~----~~~~sr~~Y~v~W~--~~~I 246 (312)
T KOG0645|consen 173 TIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL----SGMHSRALYDVPWD--NGVI 246 (312)
T ss_pred eEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc----chhcccceEeeeec--ccce
Confidence 999998752 236899999999999999999999999999999999999966321 12367889999998 4579
Q ss_pred EEEEecCCcceEEE
Q 013184 421 FIGVWDRTYGSLLQ 434 (448)
Q Consensus 421 ~~~~~D~~~~~ll~ 434 (448)
++++.|+.+.-...
T Consensus 247 aS~ggD~~i~lf~~ 260 (312)
T KOG0645|consen 247 ASGGGDDAIRLFKE 260 (312)
T ss_pred EeccCCCEEEEEEe
Confidence 99998876654433
No 48
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=2.6e-27 Score=203.12 Aligned_cols=231 Identities=16% Similarity=0.155 Sum_probs=198.7
Q ss_pred eeEEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCce
Q 013184 193 QVSTLAV--RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQ 270 (448)
Q Consensus 193 ~i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~ 270 (448)
+|.++++ +|..|++|++|+++.+|+++............+ ...+..+++ .|....+|++++.|.+|++||++.++
T Consensus 22 ~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh-~~svdql~w--~~~~~d~~atas~dk~ir~wd~r~~k 98 (313)
T KOG1407|consen 22 KVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGH-TDSVDQLCW--DPKHPDLFATASGDKTIRIWDIRSGK 98 (313)
T ss_pred cceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCC-Ccchhhhee--CCCCCcceEEecCCceEEEEEeccCc
Confidence 5788888 999999999999999999987754333333333 333344444 67777799999999999999999999
Q ss_pred EEEEeecCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 013184 271 LSKHFSFPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVR 350 (448)
Q Consensus 271 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~ 350 (448)
+.......+.-.-+.|+|+|.++++++.|..|.+.|.++.+.+...+ ....+.-++|+-++.+++..+.-|+|.|....
T Consensus 99 ~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyp 177 (313)
T KOG1407|consen 99 CTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCVEILSYP 177 (313)
T ss_pred EEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCceEEEEecc
Confidence 99999877766788999999999999999999999999988776654 45667889999888888877888999999987
Q ss_pred CCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEecCC
Q 013184 351 NLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDRT 428 (448)
Q Consensus 351 ~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~ 428 (448)
. -+++..+++|.....|+.|+|+|+|+|+|+.|..+.+||+...-+.+.+..+.-+|..++||.||++||+|+.|.-
T Consensus 178 s-Lkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~ 254 (313)
T KOG1407|consen 178 S-LKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHF 254 (313)
T ss_pred c-cccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccce
Confidence 5 7899999999999999999999999999999999999999998888889999999999999999999999999864
No 49
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=1.1e-25 Score=224.43 Aligned_cols=243 Identities=13% Similarity=0.110 Sum_probs=188.5
Q ss_pred CeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe---cCCEEEEEeCCCeEEEEEcCCCCce-----
Q 013184 153 FSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV---RDNLLIAGGFQGELICKYLDQPGVS----- 224 (448)
Q Consensus 153 ~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~---~~~~lvsg~~dg~i~vw~~~~~~~~----- 224 (448)
+.|++|+... ...+..+.||..+ |.++++ ++++|++|+.||.|++|++...+..
T Consensus 54 gvI~L~~~~r--~~~v~~L~gH~~~----------------V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~ 115 (568)
T PTZ00420 54 GAIRLENQMR--KPPVIKLKGHTSS----------------ILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIK 115 (568)
T ss_pred eEEEeeecCC--CceEEEEcCCCCC----------------EEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccc
Confidence 3578888643 3456667777664 899998 3689999999999999999764321
Q ss_pred eEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEeecCCCeeEEEECCCCCEEEEEecCCcEEE
Q 013184 225 FCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFSFPWPVNHTSLSPDGKLLVIVGDNPEGIL 304 (448)
Q Consensus 225 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i 304 (448)
........|...+.++.| +|++..+|++++.|++|++||+++++.+..+.+...|.+++|+|+|.+|++++.|+.|+|
T Consensus 116 ~p~~~L~gH~~~V~sVaf--~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrI 193 (568)
T PTZ00420 116 DPQCILKGHKKKISIIDW--NPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHI 193 (568)
T ss_pred cceEEeecCCCcEEEEEE--CCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEE
Confidence 111223455666677766 898876788999999999999999988877778888999999999999999999999999
Q ss_pred EECCCCceeEeeecCCCcEEE-----EEEcCCCCEEEEEeCCC----cEEEEEccCCCcceEEEcc--CCCCeEEEEEcC
Q 013184 305 VDSQTGKAIMPLCGHLDFSFA-----SAWHPDGRIFATGNQDK----TCRVWDVRNLSKSVAVLKG--NLGAIRSIRFTS 373 (448)
Q Consensus 305 ~d~~~~~~~~~l~~h~~~v~~-----~~~~p~g~~l~s~~~d~----~i~iwd~~~~~~~~~~~~~--~~~~v~~l~~sp 373 (448)
||+++++.+..+.+|.+.+.+ ..|++++.+|++++.++ +|+|||+++...++..+.. +.+.+...-..+
T Consensus 194 wD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~ 273 (568)
T PTZ00420 194 IDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDES 273 (568)
T ss_pred EECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCC
Confidence 999999999999999876433 34568999999988764 7999999976677765543 334444444566
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeeeee--cCcCceEEEEEccC
Q 013184 374 DGNFMAMAEPADFVHVYDAKNGFEKEQEI--DFFGEISGMTFSPD 416 (448)
Q Consensus 374 ~g~~l~s~~~d~~v~vwd~~~~~~~~~~~--~~~~~v~~~~fspd 416 (448)
+|.++++|+.|+.|++|++..+.. ..+. .+..++.+++|.|.
T Consensus 274 tg~l~lsGkGD~tIr~~e~~~~~~-~~l~~~~s~~p~~g~~f~Pk 317 (568)
T PTZ00420 274 TGLIYLIGKGDGNCRYYQHSLGSI-RKVNEYKSCSPFRSFGFLPK 317 (568)
T ss_pred CCCEEEEEECCCeEEEEEccCCcE-EeecccccCCCccceEEccc
Confidence 799999999999999999987643 2222 24567889999996
No 50
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.3e-26 Score=220.73 Aligned_cols=270 Identities=17% Similarity=0.219 Sum_probs=225.0
Q ss_pred ccccceeeeCCCCeEEEecCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCC
Q 013184 133 FQLRNLVWSTSKHDVYLMSHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQ 210 (448)
Q Consensus 133 fq~r~l~~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~d 210 (448)
|.+.-+-|. +.+.|.++....|.+|+..++....+..+. ...|+++.+ +|.+|++|..+
T Consensus 178 fY~nlldWs-s~n~laValg~~vylW~~~s~~v~~l~~~~------------------~~~vtSv~ws~~G~~LavG~~~ 238 (484)
T KOG0305|consen 178 FYLNLLDWS-SANVLAVALGQSVYLWSASSGSVTELCSFG------------------EELVTSVKWSPDGSHLAVGTSD 238 (484)
T ss_pred HhhhHhhcc-cCCeEEEEecceEEEEecCCCceEEeEecC------------------CCceEEEEECCCCCEEEEeecC
Confidence 333333355 777788888889999999988877777663 125899988 79999999999
Q ss_pred CeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEE-ee-cCCCeeEEEECC
Q 013184 211 GELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKH-FS-FPWPVNHTSLSP 288 (448)
Q Consensus 211 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~-~~-~~~~v~~~~~sp 288 (448)
|.|.|||....... ..+..+|...+.++++ . ...+.+|+.++.|..+|++..+.... +. |...|..++|++
T Consensus 239 g~v~iwD~~~~k~~--~~~~~~h~~rvg~laW--~---~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~ 311 (484)
T KOG0305|consen 239 GTVQIWDVKEQKKT--RTLRGSHASRVGSLAW--N---SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSP 311 (484)
T ss_pred CeEEEEehhhcccc--ccccCCcCceeEEEec--c---CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECC
Confidence 99999998776543 3334447788888877 3 34799999999999999987664443 44 899999999999
Q ss_pred CCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcC-CCCEEEEEe--CCCcEEEEEccCCCcceEEEccCCCC
Q 013184 289 DGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHP-DGRIFATGN--QDKTCRVWDVRNLSKSVAVLKGNLGA 365 (448)
Q Consensus 289 ~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p-~g~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~~ 365 (448)
+++++|+|+.|+.+.|||.....++..+..|...|.+++|+| ...+||+|+ .|+.|++||..+ +..+..+. -.+.
T Consensus 312 d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~-g~~i~~vd-tgsQ 389 (484)
T KOG0305|consen 312 DGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNT-GARIDSVD-TGSQ 389 (484)
T ss_pred CCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCC-CcEecccc-cCCc
Confidence 999999999999999999988889999999999999999999 567899885 599999999986 66666655 3467
Q ss_pred eEEEEEcCCCCEEEEE--eCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEecCCcc
Q 013184 366 IRSIRFTSDGNFMAMA--EPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDRTYG 430 (448)
Q Consensus 366 v~~l~~sp~g~~l~s~--~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~~~ 430 (448)
|.+|.|++..+-|+++ ..++.|.||...+.+.+..+.+|...|..++++|||+.+++|+.|.+++
T Consensus 390 VcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlr 456 (484)
T KOG0305|consen 390 VCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLR 456 (484)
T ss_pred eeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEE
Confidence 9999999998777665 3566899999999999999999999999999999999999999998854
No 51
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.6e-25 Score=193.24 Aligned_cols=202 Identities=16% Similarity=0.233 Sum_probs=174.5
Q ss_pred ecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCC---ceEEEEee--cCCCeeEEEECCCCCEEEEEecCCcEEE
Q 013184 230 TYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMER---FQLSKHFS--FPWPVNHTSLSPDGKLLVIVGDNPEGIL 304 (448)
Q Consensus 230 ~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~---~~~~~~~~--~~~~v~~~~~sp~~~~l~~~~~d~~i~i 304 (448)
...|.+.+..+++ +|..+.+|++|+.|+.||+|+... ..+...+. |...|++++|+|.|++|++++.|.++.|
T Consensus 10 ~~gh~~r~W~~aw--hp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~I 87 (312)
T KOG0645|consen 10 LSGHKDRVWSVAW--HPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVI 87 (312)
T ss_pred ecCCCCcEEEEEe--ccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEE
Confidence 3445556667766 777345899999999999999984 45555555 8999999999999999999999999999
Q ss_pred EECCCC--ceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCC--CcceEEEccCCCCeEEEEEcCCCCEEEE
Q 013184 305 VDSQTG--KAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNL--SKSVAVLKGNLGAIRSIRFTSDGNFMAM 380 (448)
Q Consensus 305 ~d~~~~--~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~--~~~~~~~~~~~~~v~~l~~sp~g~~l~s 380 (448)
|.-..+ +++..+.||...|.+++|+++|++||+++.|++|-||.+... -.++.+++.|...|..+.|+|...+|++
T Consensus 88 w~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S 167 (312)
T KOG0645|consen 88 WKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFS 167 (312)
T ss_pred eecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEE
Confidence 975543 678899999999999999999999999999999999999742 3688999999999999999999999999
Q ss_pred EeCCCeEEEEECC---CCceeeeeecCcCceEEEEEccCCCeEEEEEecCCcceEE
Q 013184 381 AEPADFVHVYDAK---NGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDRTYGSLL 433 (448)
Q Consensus 381 ~~~d~~v~vwd~~---~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~~~~ll 433 (448)
++.|++|++|.-. ...+..++.+|.+.|++++|+|.|..|++++.|+++....
T Consensus 168 ~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~ 223 (312)
T KOG0645|consen 168 CSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWR 223 (312)
T ss_pred eccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeee
Confidence 9999999999865 2346677888999999999999999999999999876544
No 52
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=4.5e-26 Score=212.06 Aligned_cols=280 Identities=17% Similarity=0.166 Sum_probs=212.1
Q ss_pred eCCCCeEEEec-CCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCCCeEEEEE
Q 013184 141 STSKHDVYLMS-HFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQGELICKY 217 (448)
Q Consensus 141 ~~~~~~v~~~~-~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~dg~i~vw~ 217 (448)
-+++-.++..+ ++.|+.||... ....+...-.+.|++.| +|.++.+ .+..|++.+.....+++|
T Consensus 176 Dp~GaR~~sGs~Dy~v~~wDf~g--Mdas~~~fr~l~P~E~h-----------~i~sl~ys~Tg~~iLvvsg~aqakl~D 242 (641)
T KOG0772|consen 176 DPSGARFVSGSLDYTVKFWDFQG--MDASMRSFRQLQPCETH-----------QINSLQYSVTGDQILVVSGSAQAKLLD 242 (641)
T ss_pred cCCCceeeeccccceEEEEeccc--ccccchhhhccCccccc-----------ccceeeecCCCCeEEEEecCcceeEEc
Confidence 35566666664 78899999854 33333333445566555 4677777 777777777777888888
Q ss_pred cCCCCceeEEE---------eecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCce-EEEEee------cCCCe
Q 013184 218 LDQPGVSFCSR---------TTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQ-LSKHFS------FPWPV 281 (448)
Q Consensus 218 ~~~~~~~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~-~~~~~~------~~~~v 281 (448)
-+...+..+.+ .+.+|-+.+++.+| +|.....|++++.||++|||++...+ ..+.+. ..-++
T Consensus 243 RdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~w--hP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~ 320 (641)
T KOG0772|consen 243 RDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCW--HPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPV 320 (641)
T ss_pred cCCceeeeeeccchhhhhhhccCCceeeeecccc--ccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCc
Confidence 66544333322 23455555566666 88888899999999999999997643 333333 23468
Q ss_pred eEEEECCCCCEEEEEecCCcEEEEECCCCc--e-eEeeecCCC--cEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcce
Q 013184 282 NHTSLSPDGKLLVIVGDNPEGILVDSQTGK--A-IMPLCGHLD--FSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSV 356 (448)
Q Consensus 282 ~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~--~-~~~l~~h~~--~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~ 356 (448)
+.++|+|+|++||+|+.||.|.+|+..+.. + ...-.+|.. .|+|++|+++|++|++-+.|+++++||+|+..+++
T Consensus 321 tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL 400 (641)
T KOG0772|consen 321 TSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPL 400 (641)
T ss_pred eeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccch
Confidence 899999999999999999999999974322 1 233456877 89999999999999999999999999999988998
Q ss_pred EEEccCC--CCeEEEEEcCCCCEEEEEeC------CCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEecCC
Q 013184 357 AVLKGNL--GAIRSIRFTSDGNFMAMAEP------ADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDRT 428 (448)
Q Consensus 357 ~~~~~~~--~~v~~l~~sp~g~~l~s~~~------d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~ 428 (448)
.+..+-. .+-+.++|||+.++|++|+. .|.+.+||..+...+..+.-....|..+.|+|-=+.|++|+.||+
T Consensus 401 ~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~ 480 (641)
T KOG0772|consen 401 NVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGT 480 (641)
T ss_pred hhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCc
Confidence 8876643 35678899999999999864 468999998888777777666778999999999889999999988
Q ss_pred cceEEEE
Q 013184 429 YGSLLQY 435 (448)
Q Consensus 429 ~~~ll~~ 435 (448)
+..++.-
T Consensus 481 ~~vyYdp 487 (641)
T KOG0772|consen 481 AHVYYDP 487 (641)
T ss_pred eEEEECc
Confidence 7655443
No 53
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=5.3e-27 Score=212.90 Aligned_cols=264 Identities=14% Similarity=0.123 Sum_probs=213.9
Q ss_pred eeCCCCeEEEe-cCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCCCeEEEE
Q 013184 140 WSTSKHDVYLM-SHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQGELICK 216 (448)
Q Consensus 140 ~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~dg~i~vw 216 (448)
|......++.. .+..|++|+....+...+-.+.|... .|+++.+ +++.+++++.|+.+++|
T Consensus 183 ~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g----------------~it~~d~d~~~~~~iAas~d~~~r~W 246 (459)
T KOG0288|consen 183 FLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLG----------------NITSIDFDSDNKHVIAASNDKNLRLW 246 (459)
T ss_pred EccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCC----------------CcceeeecCCCceEEeecCCCceeee
Confidence 44444555554 46679999987766555555666555 3888988 78999999999999999
Q ss_pred EcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEeecCCCeeEEEECCCCCEEEEE
Q 013184 217 YLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFSFPWPVNHTSLSPDGKLLVIV 296 (448)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~ 296 (448)
+++..... .+..+|...+.++.+.. . ...+++|+.|.+|++||+....+.++.-....++.|..+ ...+++|
T Consensus 247 nvd~~r~~---~TLsGHtdkVt~ak~~~--~-~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~Sg 318 (459)
T KOG0288|consen 247 NVDSLRLR---HTLSGHTDKVTAAKFKL--S-HSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISG 318 (459)
T ss_pred eccchhhh---hhhcccccceeeehhhc--c-ccceeeccccchhhhhhhhhhheeccccccccccceEec--ceeeeec
Confidence 99876643 22334666777777733 2 224999999999999999998888887777888888887 5678899
Q ss_pred ecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCC----CCeEEEEEc
Q 013184 297 GDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNL----GAIRSIRFT 372 (448)
Q Consensus 297 ~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~----~~v~~l~~s 372 (448)
..|++|++||.+++.+......+. .|+++..+++|..|++++.|.++.+.|+++ ....+.+.... ...+.+.||
T Consensus 319 H~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt-~eI~~~~sA~g~k~asDwtrvvfS 396 (459)
T KOG0288|consen 319 HFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRT-KEIRQTFSAEGFKCASDWTRVVFS 396 (459)
T ss_pred ccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeeccc-ccEEEEeeccccccccccceeEEC
Confidence 999999999999999999888765 899999999999999999999999999997 66666655322 247889999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCceeeeeecCcC--ceEEEEEccCCCeEEEEEecCCc
Q 013184 373 SDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFG--EISGMTFSPDTEALFIGVWDRTY 429 (448)
Q Consensus 373 p~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~--~v~~~~fspdg~~L~~~~~D~~~ 429 (448)
|++.|+|+|+.||.|+||++.++++...+..... .|++++|+|.|..|++++.++.+
T Consensus 397 pd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v 455 (459)
T KOG0288|consen 397 PDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAV 455 (459)
T ss_pred CCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcce
Confidence 9999999999999999999999998877765443 59999999999999999876543
No 54
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=1.3e-25 Score=223.08 Aligned_cols=252 Identities=19% Similarity=0.253 Sum_probs=213.6
Q ss_pred eEEEe-cCCeEEEEecCCCceeEEEe-cCCCCCCCCCCCCCcccCCcceeeEEEEec--CCEEEEEeCCCeEEEEEcCCC
Q 013184 146 DVYLM-SHFSIVHWSSLSSKRTEVLD-VSGHVAPCEKHPGNLLEGFTQTQVSTLAVR--DNLLIAGGFQGELICKYLDQP 221 (448)
Q Consensus 146 ~v~~~-~~~~v~~w~~~~~~~~~~~~-~~gh~~p~~~~~~~~~~~~~~~~i~~l~~~--~~~lvsg~~dg~i~vw~~~~~ 221 (448)
.+... .+..|++|+..+ ...+.. +.||... |+++++. +++|++|+.|.++++|+..++
T Consensus 220 ~~~~~s~~~tl~~~~~~~--~~~i~~~l~GH~g~----------------V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg 281 (537)
T KOG0274|consen 220 FFKSGSDDSTLHLWDLNN--GYLILTRLVGHFGG----------------VWGLAFPSGGDKLVSGSTDKTERVWDCSTG 281 (537)
T ss_pred eEEecCCCceeEEeeccc--ceEEEeeccCCCCC----------------ceeEEEecCCCEEEEEecCCcEEeEecCCC
Confidence 34444 456688999755 344444 7888874 8999996 999999999999999998776
Q ss_pred CceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee-cCCCeeEEEECCCCCEEEEEecCC
Q 013184 222 GVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS-FPWPVNHTSLSPDGKLLVIVGDNP 300 (448)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~ 300 (448)
.. ......|...+.++.+ ...++++|+.|.+|++|++++++++..+. |..+|+++..+ +.++++|+.|+
T Consensus 282 ~C---~~~l~gh~stv~~~~~-----~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~ 351 (537)
T KOG0274|consen 282 EC---THSLQGHTSSVRCLTI-----DPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDG 351 (537)
T ss_pred cE---EEEecCCCceEEEEEc-----cCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCc
Confidence 54 4555567777777765 34478889999999999999999999999 99999999998 88999999999
Q ss_pred cEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEE
Q 013184 301 EGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAM 380 (448)
Q Consensus 301 ~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s 380 (448)
.|++||+.++++++.+.+|...|.++.+.+. .++++|+.|++|++||+++..+++.++.+|.+-+..+.+ .+++|++
T Consensus 352 ~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs 428 (537)
T KOG0274|consen 352 TVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVS 428 (537)
T ss_pred eEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEe
Confidence 9999999999999999999999999988765 899999999999999998732899999999998876665 5789999
Q ss_pred EeCCCeEEEEECCCCceeeeeec-CcCceEEEEEccCCCeEEEEEecCCcc
Q 013184 381 AEPADFVHVYDAKNGFEKEQEID-FFGEISGMTFSPDTEALFIGVWDRTYG 430 (448)
Q Consensus 381 ~~~d~~v~vwd~~~~~~~~~~~~-~~~~v~~~~fspdg~~L~~~~~D~~~~ 430 (448)
++.|+.|++||..++.++..+.. |.+.|+.+++. ...+++++.|++++
T Consensus 429 ~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~ 477 (537)
T KOG0274|consen 429 SSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVK 477 (537)
T ss_pred ccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeE
Confidence 99999999999999999998888 67888888886 45778888887654
No 55
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=9.1e-25 Score=216.77 Aligned_cols=233 Identities=16% Similarity=0.148 Sum_probs=176.1
Q ss_pred eEEEEecCCEEEEEeCCCeEEEEEcCCCCc----------eeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEE
Q 013184 194 VSTLAVRDNLLIAGGFQGELICKYLDQPGV----------SFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRD 263 (448)
Q Consensus 194 i~~l~~~~~~lvsg~~dg~i~vw~~~~~~~----------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~i 263 (448)
++..++++..+++++.+.....|+...... ........+|.+.+.++.| +|.+..+|++|+.|++|++
T Consensus 25 ~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~f--sP~d~~~LaSgS~DgtIkI 102 (493)
T PTZ00421 25 PSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAF--NPFDPQKLFTASEDGTIMG 102 (493)
T ss_pred cccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEE--cCCCCCEEEEEeCCCEEEE
Confidence 444445555556665555555555332211 1111223456677777776 7844448999999999999
Q ss_pred EecCCce-------EEEEee-cCCCeeEEEECCCC-CEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCE
Q 013184 264 FDMERFQ-------LSKHFS-FPWPVNHTSLSPDG-KLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRI 334 (448)
Q Consensus 264 wd~~~~~-------~~~~~~-~~~~v~~~~~sp~~-~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~ 334 (448)
||+.++. .+..+. |...|.+++|+|++ .+|++++.|+.|+|||+.+++.+..+.+|...|.+++|+|+|.+
T Consensus 103 Wdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~l 182 (493)
T PTZ00421 103 WGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSL 182 (493)
T ss_pred EecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCE
Confidence 9997642 344455 88999999999975 69999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCcEEEEEccCCCcceEEEccCCCC-eEEEEEcCCCCEEEEEe----CCCeEEEEECCCCceeeeee--cCcCc
Q 013184 335 FATGNQDKTCRVWDVRNLSKSVAVLKGNLGA-IRSIRFTSDGNFMAMAE----PADFVHVYDAKNGFEKEQEI--DFFGE 407 (448)
Q Consensus 335 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-v~~l~~sp~g~~l~s~~----~d~~v~vwd~~~~~~~~~~~--~~~~~ 407 (448)
|++++.|++|+|||+++ ++.+..+.+|.+. +..+.|.+++..|++++ .|+.|++||+++........ .....
T Consensus 183 Latgs~Dg~IrIwD~rs-g~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~ 261 (493)
T PTZ00421 183 LCTTSKDKKLNIIDPRD-GTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSA 261 (493)
T ss_pred EEEecCCCEEEEEECCC-CcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCc
Confidence 99999999999999987 6778888888764 45678999888777654 47899999998765443332 23345
Q ss_pred eEEEEEccCCCeEEEEEe-cCCc
Q 013184 408 ISGMTFSPDTEALFIGVW-DRTY 429 (448)
Q Consensus 408 v~~~~fspdg~~L~~~~~-D~~~ 429 (448)
+....|+|++.+|++++. |+.+
T Consensus 262 ~~~~~~d~d~~~L~lggkgDg~I 284 (493)
T PTZ00421 262 LFIPFFDEDTNLLYIGSKGEGNI 284 (493)
T ss_pred eEEEEEcCCCCEEEEEEeCCCeE
Confidence 667789999999999875 7654
No 56
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=4.2e-26 Score=220.56 Aligned_cols=234 Identities=15% Similarity=0.198 Sum_probs=195.7
Q ss_pred eeCCCCeEEE-e-cCCeEEEEecCCC--ceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe---cCCEEEEEeCCCe
Q 013184 140 WSTSKHDVYL-M-SHFSIVHWSSLSS--KRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV---RDNLLIAGGFQGE 212 (448)
Q Consensus 140 ~~~~~~~v~~-~-~~~~v~~w~~~~~--~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~---~~~~lvsg~~dg~ 212 (448)
.+.+.+.++. + -|.++++|-...+ ....+-...||.. .|.+++. ...+|+++|.|++
T Consensus 372 ~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~----------------svgava~~~~~asffvsvS~D~t 435 (775)
T KOG0319|consen 372 DVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTN----------------SVGAVAGSKLGASFFVSVSQDCT 435 (775)
T ss_pred eecccCcEEEEecCCceEEEEEecCCcchhhhhhhhccccc----------------ccceeeecccCccEEEEecCCce
Confidence 3344443333 3 3778999976222 2223334456655 3666666 5579999999999
Q ss_pred EEEEEcCCCCc------eeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee-cCCCeeEEE
Q 013184 213 LICKYLDQPGV------SFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS-FPWPVNHTS 285 (448)
Q Consensus 213 i~vw~~~~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~ 285 (448)
+++|++..... ..+..+...|..-+|++++ +|+++ ++++||.|.+.+||+++..++..++. |...|.|+.
T Consensus 436 lK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vai--a~ndk-LiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~ 512 (775)
T KOG0319|consen 436 LKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAI--APNDK-LIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVS 512 (775)
T ss_pred EEEecCCCcccccccceehhhHHHHhhcccccceEe--cCCCc-eEEecccccceeeecccCceEEEEeeCCccceEEEE
Confidence 99999987221 1112234567788899999 78876 99999999999999999999999998 999999999
Q ss_pred ECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCC
Q 013184 286 LSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGA 365 (448)
Q Consensus 286 ~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 365 (448)
|+|..+.+++++.|++|+||.+.+..++.+|.||...|..+.|-.+|..|++++.||-++||++.+ +.|+.++..|...
T Consensus 513 Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt-~eC~~tlD~H~Dr 591 (775)
T KOG0319|consen 513 FSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKT-NECEMTLDAHNDR 591 (775)
T ss_pred eccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccc-hhhhhhhhhccce
Confidence 999999999999999999999999999999999999999999999999999999999999999987 8999999999999
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 013184 366 IRSIRFTSDGNFMAMAEPADFVHVYDAK 393 (448)
Q Consensus 366 v~~l~~sp~g~~l~s~~~d~~v~vwd~~ 393 (448)
|..+.-+|.+.++++|+.||.|.+|-=.
T Consensus 592 vWaL~~~~~~~~~~tgg~Dg~i~~wkD~ 619 (775)
T KOG0319|consen 592 VWALSVSPLLDMFVTGGGDGRIIFWKDV 619 (775)
T ss_pred eEEEeecCccceeEecCCCeEEEEeecC
Confidence 9999999999999999999999999633
No 57
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.7e-25 Score=189.38 Aligned_cols=227 Identities=15% Similarity=0.115 Sum_probs=191.8
Q ss_pred eeeEEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCc
Q 013184 192 TQVSTLAV--RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERF 269 (448)
Q Consensus 192 ~~i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~ 269 (448)
.+|.++.+ +|++.++++.|.+|++|+.-.+.. .+...+|...+.-+.. +.++. .|++|+.|..|.+||+++|
T Consensus 18 gaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~l---iktYsghG~EVlD~~~--s~Dns-kf~s~GgDk~v~vwDV~TG 91 (307)
T KOG0316|consen 18 GAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGAL---IKTYSGHGHEVLDAAL--SSDNS-KFASCGGDKAVQVWDVNTG 91 (307)
T ss_pred cceEEEEEccCCCEEEEcCCCceEEeecccccce---eeeecCCCceeeeccc--ccccc-ccccCCCCceEEEEEcccC
Confidence 35788877 999999999999999999876553 4455556555555544 44444 7999999999999999999
Q ss_pred eEEEEee-cCCCeeEEEECCCCCEEEEEecCCcEEEEECCC--CceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEE
Q 013184 270 QLSKHFS-FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQT--GKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRV 346 (448)
Q Consensus 270 ~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~--~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~i 346 (448)
+..+.+. |.+.|+.++|+.+...+++|+.|..+++||.++ .++++.+....+.|.++..+ +..|++|+.||++|.
T Consensus 92 kv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRt 169 (307)
T KOG0316|consen 92 KVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRT 169 (307)
T ss_pred eeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEE
Confidence 9999999 999999999999999999999999999999875 46788888889999999885 667999999999999
Q ss_pred EEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCc--eEEEEEccCCCeEEEEE
Q 013184 347 WDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGE--ISGMTFSPDTEALFIGV 424 (448)
Q Consensus 347 wd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~--v~~~~fspdg~~L~~~~ 424 (448)
||+|. +....-.- ..||++++|+++|+.+++++.+++|++.|-.+|+.+....+|... =...+++.....+++|+
T Consensus 170 ydiR~-G~l~sDy~--g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgS 246 (307)
T KOG0316|consen 170 YDIRK-GTLSSDYF--GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGS 246 (307)
T ss_pred EEeec-ceeehhhc--CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEecc
Confidence 99997 55443333 348999999999999999999999999999999999888888753 44667888888999999
Q ss_pred ecCCc
Q 013184 425 WDRTY 429 (448)
Q Consensus 425 ~D~~~ 429 (448)
.||.+
T Consensus 247 EDG~V 251 (307)
T KOG0316|consen 247 EDGKV 251 (307)
T ss_pred CCceE
Confidence 99653
No 58
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=2.8e-25 Score=218.36 Aligned_cols=275 Identities=14% Similarity=0.140 Sum_probs=218.9
Q ss_pred eeecccCCCCCcccccccceeeeCCCCeEEEe-cCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEE
Q 013184 119 FWRNTRSVKSTILHFQLRNLVWSTSKHDVYLM-SHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTL 197 (448)
Q Consensus 119 f~~~~~~~~~~~~hfq~r~l~~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l 197 (448)
|...+.++|.-.+|+.- --|+++ ..+.|.+||..-+ ..+-.+.+|-.| |..+
T Consensus 5 fEskSsRvKglsFHP~r---------PwILtslHsG~IQlWDYRM~--tli~rFdeHdGp----------------VRgv 57 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKR---------PWILTSLHSGVIQLWDYRMG--TLIDRFDEHDGP----------------VRGV 57 (1202)
T ss_pred hhcccccccceecCCCC---------CEEEEeecCceeeeehhhhh--hHHhhhhccCCc----------------ccee
Confidence 44445556654445433 333333 4677999997432 233356666665 7888
Q ss_pred Ee--cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEe
Q 013184 198 AV--RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHF 275 (448)
Q Consensus 198 ~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~ 275 (448)
+| ...++|+||.|-.|+||+....... ....+|-..+..+.| ++.-. .++++|.|.+||||+..+++++..+
T Consensus 58 ~FH~~qplFVSGGDDykIkVWnYk~rrcl---ftL~GHlDYVRt~~F--HheyP-WIlSASDDQTIrIWNwqsr~~iavl 131 (1202)
T KOG0292|consen 58 DFHPTQPLFVSGGDDYKIKVWNYKTRRCL---FTLLGHLDYVRTVFF--HHEYP-WILSASDDQTIRIWNWQSRKCIAVL 131 (1202)
T ss_pred eecCCCCeEEecCCccEEEEEecccceeh---hhhccccceeEEeec--cCCCc-eEEEccCCCeEEEEeccCCceEEEE
Confidence 88 7789999999999999999876543 334455566666655 56554 8999999999999999999999998
Q ss_pred e-cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCc-----------------------------eeEeeecCCCcEEE
Q 013184 276 S-FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGK-----------------------------AIMPLCGHLDFSFA 325 (448)
Q Consensus 276 ~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~-----------------------------~~~~l~~h~~~v~~ 325 (448)
. |...|.|..|+|...++++++-|.+|++||+..-+ ..+.+.||...|+.
T Consensus 132 tGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNw 211 (1202)
T KOG0292|consen 132 TGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNW 211 (1202)
T ss_pred ecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccce
Confidence 8 99999999999999999999999999999984210 12457799999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEccCCC-cceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecC
Q 013184 326 SAWHPDGRIFATGNQDKTCRVWDVRNLS-KSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDF 404 (448)
Q Consensus 326 ~~~~p~g~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~ 404 (448)
++|+|.-.+|++|+.|+.|++|.+...+ -.+-+..+|.+.|.++-|+|....+++.+.|++|+|||+.....+.++...
T Consensus 212 aAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrre 291 (1202)
T KOG0292|consen 212 AAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRE 291 (1202)
T ss_pred EEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeecc
Confidence 9999999999999999999999986522 245678899999999999999999999999999999999998888888777
Q ss_pred cCceEEEEEccCCCeEEEEEecC
Q 013184 405 FGEISGMTFSPDTEALFIGVWDR 427 (448)
Q Consensus 405 ~~~v~~~~fspdg~~L~~~~~D~ 427 (448)
.+..+.++-+|..+.+++ +.|+
T Consensus 292 ndRFW~laahP~lNLfAA-gHDs 313 (1202)
T KOG0292|consen 292 NDRFWILAAHPELNLFAA-GHDS 313 (1202)
T ss_pred CCeEEEEEecCCcceeee-ecCC
Confidence 788999999999886655 5554
No 59
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.94 E-value=1.7e-26 Score=213.62 Aligned_cols=230 Identities=17% Similarity=0.304 Sum_probs=193.7
Q ss_pred eeeeCCCCeEEEe--cCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCCCeE
Q 013184 138 LVWSTSKHDVYLM--SHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQGEL 213 (448)
Q Consensus 138 l~~~~~~~~v~~~--~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~dg~i 213 (448)
+-|.+..+.++++ -++.|++|++-. ...++..+.||..| |.++++ +|..++++++|+.|
T Consensus 220 i~~fp~~~hLlLS~gmD~~vklW~vy~-~~~~lrtf~gH~k~----------------Vrd~~~s~~g~~fLS~sfD~~l 282 (503)
T KOG0282|consen 220 IQWFPKKGHLLLSGGMDGLVKLWNVYD-DRRCLRTFKGHRKP----------------VRDASFNNCGTSFLSASFDRFL 282 (503)
T ss_pred hhhccceeeEEEecCCCceEEEEEEec-Ccceehhhhcchhh----------------hhhhhccccCCeeeeeecceee
Confidence 3466756666665 377899999765 66778888899886 788888 88999999999999
Q ss_pred EEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee-cCCCeeEEEECCCCCE
Q 013184 214 ICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS-FPWPVNHTSLSPDGKL 292 (448)
Q Consensus 214 ~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~ 292 (448)
++||++++..... .+.+.++.++.+ .|++.+.+++|+.|+.|+.||++++++++.+. |-++|+.+.|-++|+.
T Consensus 283 KlwDtETG~~~~~----f~~~~~~~cvkf--~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~r 356 (503)
T KOG0282|consen 283 KLWDTETGQVLSR----FHLDKVPTCVKF--HPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRR 356 (503)
T ss_pred eeeccccceEEEE----EecCCCceeeec--CCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCce
Confidence 9999999876533 244566777777 88887799999999999999999999999888 8899999999999999
Q ss_pred EEEEecCCcEEEEECCCCcee----------------------------------------------EeeecCC--CcEE
Q 013184 293 LVIVGDNPEGILVDSQTGKAI----------------------------------------------MPLCGHL--DFSF 324 (448)
Q Consensus 293 l~~~~~d~~i~i~d~~~~~~~----------------------------------------------~~l~~h~--~~v~ 324 (448)
+++.++++.++||+.+.+-.+ ..++||. ++..
T Consensus 357 FissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~ 436 (503)
T KOG0282|consen 357 FISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSC 436 (503)
T ss_pred EeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCcee
Confidence 999999999999998654211 1233554 4556
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEE
Q 013184 325 ASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDG-NFMAMAEPADFVHVYD 391 (448)
Q Consensus 325 ~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g-~~l~s~~~d~~v~vwd 391 (448)
.+.|||||++|++|+.||.+.+||.++ .+.+..+++|.+++..+.|+|.- ..+|+++.+|.|++|+
T Consensus 437 ~v~fSpDG~~l~SGdsdG~v~~wdwkt-~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 437 QVDFSPDGRTLCSGDSDGKVNFWDWKT-TKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred eEEEcCCCCeEEeecCCccEEEeechh-hhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 789999999999999999999999987 88899999999999999999964 6899999999999996
No 60
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=7e-25 Score=185.59 Aligned_cols=257 Identities=14% Similarity=0.109 Sum_probs=206.7
Q ss_pred eeeCCCCeEEEe-cCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCCCeEEE
Q 013184 139 VWSTSKHDVYLM-SHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQGELIC 215 (448)
Q Consensus 139 ~~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~dg~i~v 215 (448)
-..-.++..+++ ++.+|++||+..+..... ..||-. .|..++. ++..+++|+.|..+.+
T Consensus 24 ryN~dGnY~ltcGsdrtvrLWNp~rg~likt--YsghG~----------------EVlD~~~s~Dnskf~s~GgDk~v~v 85 (307)
T KOG0316|consen 24 RYNVDGNYCLTCGSDRTVRLWNPLRGALIKT--YSGHGH----------------EVLDAALSSDNSKFASCGGDKAVQV 85 (307)
T ss_pred EEccCCCEEEEcCCCceEEeecccccceeee--ecCCCc----------------eeeeccccccccccccCCCCceEEE
Confidence 344555665555 577899999976554443 444433 2455444 8899999999999999
Q ss_pred EEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCC--ceEEEEee-cCCCeeEEEECCCCCE
Q 013184 216 KYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMER--FQLSKHFS-FPWPVNHTSLSPDGKL 292 (448)
Q Consensus 216 w~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~--~~~~~~~~-~~~~v~~~~~sp~~~~ 292 (448)
||+++++.. +-...|.+.++++.+ +.. ...+++|+-|.++++||.++ .++++.+. ....|.++..+ +..
T Consensus 86 wDV~TGkv~---Rr~rgH~aqVNtV~f--Nee-sSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~he 157 (307)
T KOG0316|consen 86 WDVNTGKVD---RRFRGHLAQVNTVRF--NEE-SSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHE 157 (307)
T ss_pred EEcccCeee---eecccccceeeEEEe--cCc-ceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccE
Confidence 999998753 344567888899988 444 44899999999999999975 45777777 77889999886 678
Q ss_pred EEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeE--EEE
Q 013184 293 LVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIR--SIR 370 (448)
Q Consensus 293 l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~--~l~ 370 (448)
|++|+.||+++.||++.|+.....- ..+|+++.|+++++..+.++.|+++|+.|-.+ ++.+...++|...-. ..+
T Consensus 158 IvaGS~DGtvRtydiR~G~l~sDy~--g~pit~vs~s~d~nc~La~~l~stlrLlDk~t-GklL~sYkGhkn~eykldc~ 234 (307)
T KOG0316|consen 158 IVAGSVDGTVRTYDIRKGTLSSDYF--GHPITSVSFSKDGNCSLASSLDSTLRLLDKET-GKLLKSYKGHKNMEYKLDCC 234 (307)
T ss_pred EEeeccCCcEEEEEeecceeehhhc--CCcceeEEecCCCCEEEEeeccceeeecccch-hHHHHHhcccccceeeeeee
Confidence 9999999999999999998766554 45899999999999999999999999999976 899999999986433 345
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCc-eEEEEEccCCCeEEEEE
Q 013184 371 FTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGE-ISGMTFSPDTEALFIGV 424 (448)
Q Consensus 371 ~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~-v~~~~fspdg~~L~~~~ 424 (448)
++.....+++|+.||.|++||+.....+..+..+... |.+++++|.-..|+++.
T Consensus 235 l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~ 289 (307)
T KOG0316|consen 235 LNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITAT 289 (307)
T ss_pred ecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEec
Confidence 6666789999999999999999998888877777766 89999999887777765
No 61
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.94 E-value=3.6e-25 Score=199.13 Aligned_cols=230 Identities=18% Similarity=0.260 Sum_probs=186.4
Q ss_pred CCCeEEEec-CCeEEEEecCCCcee--EEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCCCeEEEEE
Q 013184 143 SKHDVYLMS-HFSIVHWSSLSSKRT--EVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQGELICKY 217 (448)
Q Consensus 143 ~~~~v~~~~-~~~v~~w~~~~~~~~--~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~dg~i~vw~ 217 (448)
+...+..++ +.++++|-...+... .+....||..+ |-++++ ++..+++|+.|..|.+|+
T Consensus 158 ~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~----------------V~sVsv~~sgtr~~SgS~D~~lkiWs 221 (423)
T KOG0313|consen 158 SSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRS----------------VDSVSVDSSGTRFCSGSWDTMLKIWS 221 (423)
T ss_pred ccceEEEecCCceEEEEEecCchhhhhHHhHhcccccc----------------eeEEEecCCCCeEEeecccceeeecc
Confidence 333455554 667888877554332 23333477764 788887 889999999999999999
Q ss_pred cCCCC----------------------ceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEe
Q 013184 218 LDQPG----------------------VSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHF 275 (448)
Q Consensus 218 ~~~~~----------------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~ 275 (448)
..... ......+..+|...+.++.| ++. ..+++++.|.+|+.||+++++.+..+
T Consensus 222 ~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w--~d~--~v~yS~SwDHTIk~WDletg~~~~~~ 297 (423)
T KOG0313|consen 222 VETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVW--SDA--TVIYSVSWDHTIKVWDLETGGLKSTL 297 (423)
T ss_pred cCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEE--cCC--CceEeecccceEEEEEeecccceeee
Confidence 32211 01112345567777777766 443 37999999999999999999999999
Q ss_pred ecCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCc---eeEeeecCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEEccC
Q 013184 276 SFPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGK---AIMPLCGHLDFSFASAWHP-DGRIFATGNQDKTCRVWDVRN 351 (448)
Q Consensus 276 ~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~---~~~~l~~h~~~v~~~~~~p-~g~~l~s~~~d~~i~iwd~~~ 351 (448)
..+..++|+..+|..++|++|+.|..+++||.+++. ..++|.+|...|.++.|+| +..+|++|+.|+++++||+|.
T Consensus 298 ~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS 377 (423)
T KOG0313|consen 298 TTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRS 377 (423)
T ss_pred ecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEecc
Confidence 989999999999999999999999999999998764 3567889999999999999 556899999999999999999
Q ss_pred CCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 013184 352 LSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAK 393 (448)
Q Consensus 352 ~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~ 393 (448)
...++..+.+|...|.++.|+ +|.+|++|+.|+.|+|+.-.
T Consensus 378 ~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 378 TKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred CCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEeccc
Confidence 777999999999999999997 57899999999999998743
No 62
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=7.7e-26 Score=219.76 Aligned_cols=276 Identities=14% Similarity=0.238 Sum_probs=206.8
Q ss_pred CCCCeEEEecCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEE---EecCCEEEEEeCCCeEEEEEc
Q 013184 142 TSKHDVYLMSHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTL---AVRDNLLIAGGFQGELICKYL 218 (448)
Q Consensus 142 ~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l---~~~~~~lvsg~~dg~i~vw~~ 218 (448)
.+...|..++...++++........+-+++.-...+ ++. + .+..+ .+..++|++++..|.|.+||+
T Consensus 49 r~~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kq------n~~--~---S~~DVkW~~~~~NlIAT~s~nG~i~vWdl 117 (839)
T KOG0269|consen 49 RDINQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQ------NKF--Y---SAADVKWGQLYSNLIATCSTNGVISVWDL 117 (839)
T ss_pred CCcceeEEecccceeeEeeCcccCCcceeeeccccc------cee--e---ehhhcccccchhhhheeecCCCcEEEEec
Confidence 555677778777777776544333332222200000 000 0 11122 227799999999999999999
Q ss_pred CCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee-cCCCeeEEEECC-CCCEEEEE
Q 013184 219 DQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS-FPWPVNHTSLSP-DGKLLVIV 296 (448)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp-~~~~l~~~ 296 (448)
..............|...++.++| ++....+|++|+.||.|++||++..+-..++. ....|..++|+| .+..++++
T Consensus 118 nk~~rnk~l~~f~EH~Rs~~~ldf--h~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~ 195 (839)
T KOG0269|consen 118 NKSIRNKLLTVFNEHERSANKLDF--HSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASI 195 (839)
T ss_pred CccccchhhhHhhhhccceeeeee--ccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEe
Confidence 885432223345567777788888 77777899999999999999999887777666 677899999999 78899999
Q ss_pred ecCCcEEEEECCCC-ceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCC-CcceEEEccCCCCeEEEEEcCC
Q 013184 297 GDNPEGILVDSQTG-KAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNL-SKSVAVLKGNLGAIRSIRFTSD 374 (448)
Q Consensus 297 ~~d~~i~i~d~~~~-~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~v~~l~~sp~ 374 (448)
.+.|.+++||++.. ++...+.+|.++|.++.|+|++.+||||+.|+.|+|||.... ..++.++. ...+|.+++|-|.
T Consensus 196 ~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~ 274 (839)
T KOG0269|consen 196 HDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRPA 274 (839)
T ss_pred cCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEe-ecceeeeeeeccC
Confidence 99999999999865 456778899999999999999999999999999999999642 23333333 4578999999998
Q ss_pred CCE-EEEEe--CCCeEEEEECCCCceee-eeecCcCceEEEEEcc-CCCeEEEEEecCCcce
Q 013184 375 GNF-MAMAE--PADFVHVYDAKNGFEKE-QEIDFFGEISGMTFSP-DTEALFIGVWDRTYGS 431 (448)
Q Consensus 375 g~~-l~s~~--~d~~v~vwd~~~~~~~~-~~~~~~~~v~~~~fsp-dg~~L~~~~~D~~~~~ 431 (448)
.++ ||+++ .|-.|+|||++..+..+ .+..|...+++++|.. |...|.+++.|+++-.
T Consensus 275 ~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~q 336 (839)
T KOG0269|consen 275 RSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQ 336 (839)
T ss_pred ccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHH
Confidence 764 55554 35689999999887664 4667999999999975 5667889999987643
No 63
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=2.2e-25 Score=219.09 Aligned_cols=232 Identities=15% Similarity=0.235 Sum_probs=203.6
Q ss_pred eeEEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCce
Q 013184 193 QVSTLAV--RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQ 270 (448)
Q Consensus 193 ~i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~ 270 (448)
+|..++| ..-.++++-..|.|++||...... ..-...|.+++..++| +|.+. ++++|+.|-.|++|+..+.+
T Consensus 11 RvKglsFHP~rPwILtslHsG~IQlWDYRM~tl---i~rFdeHdGpVRgv~F--H~~qp-lFVSGGDDykIkVWnYk~rr 84 (1202)
T KOG0292|consen 11 RVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTL---IDRFDEHDGPVRGVDF--HPTQP-LFVSGGDDYKIKVWNYKTRR 84 (1202)
T ss_pred cccceecCCCCCEEEEeecCceeeeehhhhhhH---HhhhhccCCccceeee--cCCCC-eEEecCCccEEEEEecccce
Confidence 5677777 667899999999999999877653 2334567888899988 88876 99999999999999999999
Q ss_pred EEEEee-cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 013184 271 LSKHFS-FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDV 349 (448)
Q Consensus 271 ~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~ 349 (448)
++.++. |-..|..+.|++.-.+|+++++|.+|+||+.++++++..+.||..+|.|.+|+|...+++++|-|.+||+||+
T Consensus 85 clftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDi 164 (1202)
T KOG0292|consen 85 CLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDI 164 (1202)
T ss_pred ehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEee
Confidence 988877 9999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCC-------C---------------------cceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--eee
Q 013184 350 RNL-------S---------------------KSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGF--EKE 399 (448)
Q Consensus 350 ~~~-------~---------------------~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~--~~~ 399 (448)
... + -..+.+.||...|+-++|+|.-..+++|+.|..|++|.+...+ .+.
T Consensus 165 sGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvD 244 (1202)
T KOG0292|consen 165 SGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVD 244 (1202)
T ss_pred cchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeeh
Confidence 521 0 0125678999999999999999999999999999999987654 345
Q ss_pred eeecCcCceEEEEEccCCCeEEEEEecCCcc
Q 013184 400 QEIDFFGEISGMTFSPDTEALFIGVWDRTYG 430 (448)
Q Consensus 400 ~~~~~~~~v~~~~fspdg~~L~~~~~D~~~~ 430 (448)
+..+|.+.|+++-|+|.-..+++.+.|++++
T Consensus 245 tcrgH~nnVssvlfhp~q~lIlSnsEDksir 275 (1202)
T KOG0292|consen 245 TCRGHYNNVSSVLFHPHQDLILSNSEDKSIR 275 (1202)
T ss_pred hhhcccCCcceEEecCccceeEecCCCccEE
Confidence 6778999999999999988999998887764
No 64
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=2.9e-24 Score=188.74 Aligned_cols=261 Identities=15% Similarity=0.123 Sum_probs=206.0
Q ss_pred ceeeeCCCCeEEEe-cCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe-cCCEEEEEeCCCeEE
Q 013184 137 NLVWSTSKHDVYLM-SHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV-RDNLLIAGGFQGELI 214 (448)
Q Consensus 137 ~l~~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~-~~~~lvsg~~dg~i~ 214 (448)
.+...+++..++.+ -++++++|+.........++. . .++.+++| +...+++|+.||.|+
T Consensus 18 ~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~---~----------------~plL~c~F~d~~~~~~G~~dg~vr 78 (323)
T KOG1036|consen 18 SVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKH---G----------------APLLDCAFADESTIVTGGLDGQVR 78 (323)
T ss_pred eEEEcCcCCcEEEEeccCcEEEEeccchhhhhheec---C----------------CceeeeeccCCceEEEeccCceEE
Confidence 34455666666665 489999999866533322222 2 25888899 889999999999999
Q ss_pred EEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEeecCCCeeEEEECCCCCEEE
Q 013184 215 CKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFSFPWPVNHTSLSPDGKLLV 294 (448)
Q Consensus 215 vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 294 (448)
.+|+++... .....|...+.++.. .+-.+ .+++|++|++|++||.+.......+.....|.|+..+ |..|+
T Consensus 79 ~~Dln~~~~----~~igth~~~i~ci~~--~~~~~-~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~--g~~Lv 149 (323)
T KOG1036|consen 79 RYDLNTGNE----DQIGTHDEGIRCIEY--SYEVG-CVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVS--GNRLV 149 (323)
T ss_pred EEEecCCcc----eeeccCCCceEEEEe--eccCC-eEEEcccCccEEEEeccccccccccccCceEEEEecc--CCEEE
Confidence 999998774 344567777778877 33333 7999999999999999987777777777789998886 78999
Q ss_pred EEecCCcEEEEECCCCceeEeee--cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCC---CcceEEEccCCC-----
Q 013184 295 IVGDNPEGILVDSQTGKAIMPLC--GHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNL---SKSVAVLKGNLG----- 364 (448)
Q Consensus 295 ~~~~d~~i~i~d~~~~~~~~~l~--~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~---~~~~~~~~~~~~----- 364 (448)
+|+.+..+.+||+++.....+.. .-.-.+.++++-|++.=++.++-||.|.+=.+... ......++.|..
T Consensus 150 Vg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~ 229 (323)
T KOG1036|consen 150 VGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDT 229 (323)
T ss_pred EeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCc
Confidence 99999999999999876543222 23466889999998888999999999887655431 133455666643
Q ss_pred ----CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEe
Q 013184 365 ----AIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVW 425 (448)
Q Consensus 365 ----~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~ 425 (448)
||++++|+|-...||+|+.||.|.+||+.+.+.+.++......|.+++|+.+|..||+++.
T Consensus 230 ~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 230 EIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred eEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 7999999999999999999999999999999999998888888999999999999999864
No 65
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.94 E-value=4.8e-25 Score=202.88 Aligned_cols=234 Identities=18% Similarity=0.224 Sum_probs=188.4
Q ss_pred cCCEEEEEeCCCeEEEEEcCCCCcee--------EEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCce-
Q 013184 200 RDNLLIAGGFQGELICKYLDQPGVSF--------CSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQ- 270 (448)
Q Consensus 200 ~~~~lvsg~~dg~i~vw~~~~~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~- 270 (448)
+.+++++++..|.|.||+..+..... ..++..|... -..++| ++...-.+++++.|++|++||+....
T Consensus 136 np~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~e-g~glsW--n~~~~g~Lls~~~d~~i~lwdi~~~~~ 212 (422)
T KOG0264|consen 136 NPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKE-GYGLSW--NRQQEGTLLSGSDDHTICLWDINAESK 212 (422)
T ss_pred CCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeeccc-cccccc--ccccceeEeeccCCCcEEEEecccccc
Confidence 77889999999999999987544211 1245555542 224444 66666689999999999999997533
Q ss_pred ------EEEEee-cCCCeeEEEECC-CCCEEEEEecCCcEEEEECC--CCceeEeeecCCCcEEEEEEcC-CCCEEEEEe
Q 013184 271 ------LSKHFS-FPWPVNHTSLSP-DGKLLVIVGDNPEGILVDSQ--TGKAIMPLCGHLDFSFASAWHP-DGRIFATGN 339 (448)
Q Consensus 271 ------~~~~~~-~~~~v~~~~~sp-~~~~l~~~~~d~~i~i~d~~--~~~~~~~l~~h~~~v~~~~~~p-~g~~l~s~~ 339 (448)
+...+. |...|..++|+| ...+++++++|+.+.|||++ +.++.+...+|...+.|++|+| ++..||||+
T Consensus 213 ~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S 292 (422)
T KOG0264|consen 213 EDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGS 292 (422)
T ss_pred CCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEecc
Confidence 223344 899999999999 67789999999999999999 5666777889999999999999 667999999
Q ss_pred CCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCCc--------------eeeeeecC
Q 013184 340 QDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDG-NFMAMAEPADFVHVYDAKNGF--------------EKEQEIDF 404 (448)
Q Consensus 340 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g-~~l~s~~~d~~v~vwd~~~~~--------------~~~~~~~~ 404 (448)
.|++|++||+|+..++++.+.+|...|.++.|||.. ..||+++.|+.+.|||+..-. .+..-.+|
T Consensus 293 ~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH 372 (422)
T KOG0264|consen 293 ADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGH 372 (422)
T ss_pred CCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCc
Confidence 999999999999999999999999999999999975 688999999999999986421 22444578
Q ss_pred cCceEEEEEccCCCeEEEEEecCCcceEEEEeccc
Q 013184 405 FGEISGMTFSPDTEALFIGVWDRTYGSLLQYNRCR 439 (448)
Q Consensus 405 ~~~v~~~~fspdg~~L~~~~~D~~~~~ll~~~~~~ 439 (448)
.+.|..++|+|+..+++++..+- ..||.++..
T Consensus 373 ~~kV~DfsWnp~ePW~I~SvaeD---N~LqIW~~s 404 (422)
T KOG0264|consen 373 TAKVSDFSWNPNEPWTIASVAED---NILQIWQMA 404 (422)
T ss_pred ccccccccCCCCCCeEEEEecCC---ceEEEeecc
Confidence 88999999999998888777765 445555443
No 66
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=9.1e-24 Score=210.74 Aligned_cols=217 Identities=11% Similarity=0.077 Sum_probs=167.2
Q ss_pred EeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCce--------EEEEee-c
Q 013184 207 GGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQ--------LSKHFS-F 277 (448)
Q Consensus 207 g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~--------~~~~~~-~ 277 (448)
|+..|.|++|+...... ......|.+.+.+++| +|....+|++|+.|++|+|||+.++. ++..+. |
T Consensus 50 GG~~gvI~L~~~~r~~~---v~~L~gH~~~V~~laf--sP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH 124 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPP---VIKLKGHTSSILDLQF--NPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH 124 (568)
T ss_pred CCceeEEEeeecCCCce---EEEEcCCCCCEEEEEE--cCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecC
Confidence 67789999999866432 3334466677777776 88755589999999999999997532 223444 8
Q ss_pred CCCeeEEEECCCCCE-EEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcce
Q 013184 278 PWPVNHTSLSPDGKL-LVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSV 356 (448)
Q Consensus 278 ~~~v~~~~~sp~~~~-l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~ 356 (448)
...|.+++|+|++.. |++++.|+.|+|||+++++.+..+. |...|.+++|+|+|.+|++++.|+.|+|||+++ +..+
T Consensus 125 ~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rs-g~~i 202 (568)
T PTZ00420 125 KKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRK-QEIA 202 (568)
T ss_pred CCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCC-CcEE
Confidence 899999999998875 4688999999999999998887776 667899999999999999999999999999997 7788
Q ss_pred EEEccCCCCeEE-----EEEcCCCCEEEEEeCCC----eEEEEECCCC-ceeeeee--cCcCceEEEEEccCCCeEEEEE
Q 013184 357 AVLKGNLGAIRS-----IRFTSDGNFMAMAEPAD----FVHVYDAKNG-FEKEQEI--DFFGEISGMTFSPDTEALFIGV 424 (448)
Q Consensus 357 ~~~~~~~~~v~~-----l~~sp~g~~l~s~~~d~----~v~vwd~~~~-~~~~~~~--~~~~~v~~~~fspdg~~L~~~~ 424 (448)
..+.+|.+.+.+ ..|++++.+|++++.++ .|+|||++.. ..+.... .+.+.+......++|.++++|.
T Consensus 203 ~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGk 282 (568)
T PTZ00420 203 SSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGK 282 (568)
T ss_pred EEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEE
Confidence 889999876533 34568999999988774 7999999863 3343322 2223333444455688898998
Q ss_pred ecCCcc
Q 013184 425 WDRTYG 430 (448)
Q Consensus 425 ~D~~~~ 430 (448)
.|++++
T Consensus 283 GD~tIr 288 (568)
T PTZ00420 283 GDGNCR 288 (568)
T ss_pred CCCeEE
Confidence 887654
No 67
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.3e-25 Score=214.34 Aligned_cols=226 Identities=18% Similarity=0.241 Sum_probs=192.2
Q ss_pred cCCEEEEEeCCCeEEEEEcCCCCcee---EEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCc--eEEEE
Q 013184 200 RDNLLIAGGFQGELICKYLDQPGVSF---CSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERF--QLSKH 274 (448)
Q Consensus 200 ~~~~lvsg~~dg~i~vw~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~--~~~~~ 274 (448)
.+++|++||.||.|++|++....... +.....+|..-++-+.+ ...++ .|+++|.|-+|++|+...+ -+..+
T Consensus 36 ~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL--~~~~~-tlIS~SsDtTVK~W~~~~~~~~c~st 112 (735)
T KOG0308|consen 36 NGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIIL--CGNGK-TLISASSDTTVKVWNAHKDNTFCMST 112 (735)
T ss_pred CCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHh--hcCCC-ceEEecCCceEEEeecccCcchhHhh
Confidence 67789999999999999987655321 12233455555555544 33443 7999999999999999876 35556
Q ss_pred ee-cCCCeeEEEE-CCCCCEEEEEecCCcEEEEECCCCc--ee--------Eeee-cCCCcEEEEEEcCCCCEEEEEeCC
Q 013184 275 FS-FPWPVNHTSL-SPDGKLLVIVGDNPEGILVDSQTGK--AI--------MPLC-GHLDFSFASAWHPDGRIFATGNQD 341 (448)
Q Consensus 275 ~~-~~~~v~~~~~-sp~~~~l~~~~~d~~i~i~d~~~~~--~~--------~~l~-~h~~~v~~~~~~p~g~~l~s~~~d 341 (448)
+. |...|.|+++ .++..++|+||-|+.|.+||+.++. .+ ..+. |+...|++++.++.|..|++|+..
T Consensus 113 ir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgte 192 (735)
T KOG0308|consen 113 IRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTE 192 (735)
T ss_pred hhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcc
Confidence 66 9999999999 7788999999999999999999872 22 2333 789999999999999999999999
Q ss_pred CcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEE
Q 013184 342 KTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALF 421 (448)
Q Consensus 342 ~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~ 421 (448)
+.+++||.++ .+.+..+.+|...|+.+..++||+.+++|+.||+|++||+...+++.++..|...|+++.-+|+=..++
T Consensus 193 k~lr~wDprt-~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vY 271 (735)
T KOG0308|consen 193 KDLRLWDPRT-CKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVY 271 (735)
T ss_pred cceEEecccc-ccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEE
Confidence 9999999998 777888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCc
Q 013184 422 IGVWDRTY 429 (448)
Q Consensus 422 ~~~~D~~~ 429 (448)
+|+.|+.+
T Consensus 272 sG~rd~~i 279 (735)
T KOG0308|consen 272 SGGRDGNI 279 (735)
T ss_pred ecCCCCcE
Confidence 99998754
No 68
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.93 E-value=1.5e-25 Score=191.13 Aligned_cols=241 Identities=21% Similarity=0.230 Sum_probs=194.0
Q ss_pred eEEEEe-----cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCC
Q 013184 194 VSTLAV-----RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMER 268 (448)
Q Consensus 194 i~~l~~-----~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~ 268 (448)
|..+++ +|-+|++++.||.-.+-+-+++... -+..+|.+.+...++ + .+..+.++++.|-+.++||.-+
T Consensus 17 vvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwi---gtfeghkgavw~~~l--~-~na~~aasaaadftakvw~a~t 90 (334)
T KOG0278|consen 17 VVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWI---GTFEGHKGAVWSATL--N-KNATRAASAAADFTAKVWDAVT 90 (334)
T ss_pred eeEEeccCCCCCceEEEEeccCCCchhccCCCCCcE---EeeeccCcceeeeec--C-chhhhhhhhcccchhhhhhhhh
Confidence 555555 7889999999999887776666653 344466666777666 3 3345788999999999999999
Q ss_pred ceEEEEeecCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCc-eeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEE
Q 013184 269 FQLSKHFSFPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGK-AIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVW 347 (448)
Q Consensus 269 ~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~-~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iw 347 (448)
|..+..|+|..-|..++|+.|.+.|++|+.+..++|+|++..+ +...+.+|.+.|..+.|....+.|++++.|++||+|
T Consensus 91 gdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLW 170 (334)
T KOG0278|consen 91 GDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLW 170 (334)
T ss_pred hhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEE
Confidence 9999999999999999999999999999999999999998765 466788999999999999988999999999999999
Q ss_pred EccCCCcceEEEccCC---------------------------------------CCeEEEEEcCCCCEEEEEeCCCeEE
Q 013184 348 DVRNLSKSVAVLKGNL---------------------------------------GAIRSIRFTSDGNFMAMAEPADFVH 388 (448)
Q Consensus 348 d~~~~~~~~~~~~~~~---------------------------------------~~v~~l~~sp~g~~l~s~~~d~~v~ 388 (448)
|.++ +..++.+.... ..|.+..++|+..++++|+.|..++
T Consensus 171 D~rT-gt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~ 249 (334)
T KOG0278|consen 171 DHRT-GTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVY 249 (334)
T ss_pred Eecc-CcEEEEEecCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCccccccccccCCCceEEecCcceEEE
Confidence 9997 55555443211 1245555666666667777888888
Q ss_pred EEECCCCceeeee-ecCcCceEEEEEccCCCeEEEEEecCCcceEEEEecccceE
Q 013184 389 VYDAKNGFEKEQE-IDFFGEISGMTFSPDTEALFIGVWDRTYGSLLQYNRCRNYT 442 (448)
Q Consensus 389 vwd~~~~~~~~~~-~~~~~~v~~~~fspdg~~L~~~~~D~~~~~ll~~~~~~~~~ 442 (448)
.||..+|..+... .+|.++|.++.|+|+|+.-++|+.||++ +|+|....+.+.
T Consensus 250 kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTi-rlWQt~~~~~~~ 303 (334)
T KOG0278|consen 250 KFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTI-RLWQTTPGKTYG 303 (334)
T ss_pred EEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceE-EEEEecCCCchh
Confidence 8888888877764 7899999999999999999999999885 566666666554
No 69
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.93 E-value=6.9e-26 Score=199.76 Aligned_cols=231 Identities=13% Similarity=0.186 Sum_probs=193.7
Q ss_pred EEEEecCCEEEEEeCCCeEEEEEcCCCCceeEEEeec-----CCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCc
Q 013184 195 STLAVRDNLLIAGGFQGELICKYLDQPGVSFCSRTTY-----DENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERF 269 (448)
Q Consensus 195 ~~l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~ 269 (448)
.-+++++++|++|+.||-|.+|+..+++...-.+... -+...+.|++| +.+.. .+++|+.||.|++|.+++|
T Consensus 219 A~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~F--SRDsE-MlAsGsqDGkIKvWri~tG 295 (508)
T KOG0275|consen 219 ARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISF--SRDSE-MLASGSQDGKIKVWRIETG 295 (508)
T ss_pred eeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEee--cccHH-HhhccCcCCcEEEEEEecc
Confidence 3345599999999999999999998876432221111 12344556655 77765 8999999999999999999
Q ss_pred eEEEEee--cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEE
Q 013184 270 QLSKHFS--FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVW 347 (448)
Q Consensus 270 ~~~~~~~--~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iw 347 (448)
++++.|. |...|+|+.||.|+..+++++.|.+++|--+++|+++..+.||..+|+...|.++|.++++++.||+|++|
T Consensus 296 ~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW 375 (508)
T KOG0275|consen 296 QCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVW 375 (508)
T ss_pred hHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEe
Confidence 9999998 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCcceEEEc--------------------------------------------c---CCCCeEEEEEcCCCCEEEE
Q 013184 348 DVRNLSKSVAVLK--------------------------------------------G---NLGAIRSIRFTSDGNFMAM 380 (448)
Q Consensus 348 d~~~~~~~~~~~~--------------------------------------------~---~~~~v~~l~~sp~g~~l~s 380 (448)
+..+ ..|+.+++ . ..+..-+.+.||.|.++.+
T Consensus 376 ~~Kt-teC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYc 454 (508)
T KOG0275|consen 376 HGKT-TECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYC 454 (508)
T ss_pred cCcc-hhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEE
Confidence 9865 22221111 0 1123446778999999999
Q ss_pred EeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEecCCc
Q 013184 381 AEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDRTY 429 (448)
Q Consensus 381 ~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~~ 429 (448)
.+.|+.++.|.+.+|+....+.-|...|.+++-+|.-+.|++-+.|+..
T Consensus 455 igED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgll 503 (508)
T KOG0275|consen 455 IGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLL 503 (508)
T ss_pred EccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchh
Confidence 9999999999999999999999999999999999999999999988753
No 70
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.93 E-value=4.5e-24 Score=215.24 Aligned_cols=290 Identities=19% Similarity=0.207 Sum_probs=213.4
Q ss_pred cccccccceeeeCCCCeEEEec-----CCeEEEEecCCC---ceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--
Q 013184 130 ILHFQLRNLVWSTSKHDVYLMS-----HFSIVHWSSLSS---KRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV-- 199 (448)
Q Consensus 130 ~~hfq~r~l~~~~~~~~v~~~~-----~~~v~~w~~~~~---~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~-- 199 (448)
+.|.+.+.........-+-++. ++++++|+...- ......++..|+.....|- ..|+|+.|
T Consensus 9 v~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~---------~sv~CVR~S~ 79 (942)
T KOG0973|consen 9 VNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHD---------GSVNCVRFSP 79 (942)
T ss_pred cccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeecccc---------CceeEEEECC
Confidence 4566666444443443333432 445779986321 1111122333333222222 25888877
Q ss_pred cCCEEEEEeCCCeEEEEEcCCCC--c-------------eeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEE
Q 013184 200 RDNLLIAGGFQGELICKYLDQPG--V-------------SFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDF 264 (448)
Q Consensus 200 ~~~~lvsg~~dg~i~vw~~~~~~--~-------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iw 264 (448)
+|.+||+|+.|+.|.||.....+ . -.+..+...|..-+.-++| +|++. ++++++.|++|.||
T Consensus 80 dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~W--sp~~~-~lvS~s~DnsViiw 156 (942)
T KOG0973|consen 80 DGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNW--SPDDS-LLVSVSLDNSVIIW 156 (942)
T ss_pred CCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceecc--CCCcc-EEEEecccceEEEE
Confidence 99999999999999999987310 0 0123334445555555555 89876 99999999999999
Q ss_pred ecCCceEEEEee-cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCC------CcEEEEEEcCCCCEEEE
Q 013184 265 DMERFQLSKHFS-FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHL------DFSFASAWHPDGRIFAT 337 (448)
Q Consensus 265 d~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~------~~v~~~~~~p~g~~l~s 337 (448)
+..+++.+..+. |.+.|..+.|.|-|++||+-++|++|++|.+.+....+.+.++. .....+.|+|||.+|++
T Consensus 157 n~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las 236 (942)
T KOG0973|consen 157 NAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLAS 236 (942)
T ss_pred ccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecc
Confidence 999999999988 99999999999999999999999999999987766766665533 45778999999999999
Q ss_pred EeC----CCcEEEEEccCCCcceEEEccCCCCeEEEEEcC--------CC-----C----EEEEEeCCCeEEEEECCCCc
Q 013184 338 GNQ----DKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTS--------DG-----N----FMAMAEPADFVHVYDAKNGF 396 (448)
Q Consensus 338 ~~~----d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp--------~g-----~----~l~s~~~d~~v~vwd~~~~~ 396 (448)
... -.++.|.+-.+ .+.-..+-+|.+++.+++|+| +| . .+|+|+.|++|.||.....+
T Consensus 237 ~nA~n~~~~~~~IieR~t-Wk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~R 315 (942)
T KOG0973|consen 237 PNAVNGGKSTIAIIERGT-WKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPR 315 (942)
T ss_pred hhhccCCcceeEEEecCC-ceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCC
Confidence 853 34678877744 566678899999999999998 11 1 67899999999999987776
Q ss_pred eeeeeec-CcCceEEEEEccCCCeEEEEEecCCcceE
Q 013184 397 EKEQEID-FFGEISGMTFSPDTEALFIGVWDRTYGSL 432 (448)
Q Consensus 397 ~~~~~~~-~~~~v~~~~fspdg~~L~~~~~D~~~~~l 432 (448)
++..+.. ....|..++|+|||..|++++.||++..+
T Consensus 316 Pl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i 352 (942)
T KOG0973|consen 316 PLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALI 352 (942)
T ss_pred chhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEE
Confidence 6655444 34679999999999999999999886543
No 71
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.93 E-value=6e-24 Score=194.22 Aligned_cols=263 Identities=15% Similarity=0.196 Sum_probs=211.2
Q ss_pred eCCCCeEEEecCC-eEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCCCeEEEEE
Q 013184 141 STSKHDVYLMSHF-SIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQGELICKY 217 (448)
Q Consensus 141 ~~~~~~v~~~~~~-~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~dg~i~vw~ 217 (448)
.++...+.+.+.. .+.++|-.+.. -+..+.||.. .|+.+.+ +...+++++.|-.|+||.
T Consensus 228 ~~s~~~ilTGG~d~~av~~d~~s~q--~l~~~~Gh~k----------------ki~~v~~~~~~~~v~~aSad~~i~vws 289 (506)
T KOG0289|consen 228 IPSSSKILTGGEDKTAVLFDKPSNQ--ILATLKGHTK----------------KITSVKFHKDLDTVITASADEIIRVWS 289 (506)
T ss_pred cCCCCcceecCCCCceEEEecchhh--hhhhccCcce----------------EEEEEEeccchhheeecCCcceEEeec
Confidence 3444556665544 67888864432 2334455553 5777777 667889999999999999
Q ss_pred cCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEeecC---CCeeEEEECCCCCEEE
Q 013184 218 LDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFSFP---WPVNHTSLSPDGKLLV 294 (448)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~---~~v~~~~~sp~~~~l~ 294 (448)
...... ......|.+.++.+.. +|+|. +|+++++|++.-+.|++++..+....+. -.+++.+|+|||.+|.
T Consensus 290 ~~~~s~---~~~~~~h~~~V~~ls~--h~tge-YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifg 363 (506)
T KOG0289|consen 290 VPLSSE---PTSSRPHEEPVTGLSL--HPTGE-YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFG 363 (506)
T ss_pred cccccC---ccccccccccceeeee--ccCCc-EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEe
Confidence 876653 2333456677778777 88887 9999999999999999999887776653 4589999999999999
Q ss_pred EEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccC-CCCeEEEEEcC
Q 013184 295 IVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGN-LGAIRSIRFTS 373 (448)
Q Consensus 295 ~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~v~~l~~sp 373 (448)
+|..|+.++|||+.++..+..|.+|.++|.+++|+.+|-++++++.|+.|++||+|. .+...++... ..++.++.|.+
T Consensus 364 tgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRK-l~n~kt~~l~~~~~v~s~~fD~ 442 (506)
T KOG0289|consen 364 TGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRK-LKNFKTIQLDEKKEVNSLSFDQ 442 (506)
T ss_pred ccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehh-hcccceeeccccccceeEEEcC
Confidence 999999999999999999999999999999999999999999999999999999998 4455555433 34799999999
Q ss_pred CCCEEEEEeCCCeEEEEECC--CCceeeeeecCcCceEEEEEccCCCeEEEEEecCC
Q 013184 374 DGNFMAMAEPADFVHVYDAK--NGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDRT 428 (448)
Q Consensus 374 ~g~~l~s~~~d~~v~vwd~~--~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~ 428 (448)
.|.+|+.++.+=.|++++-. +..++.++..|.+..+++.|....++|++++.|..
T Consensus 443 SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~ 499 (506)
T KOG0289|consen 443 SGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAI 499 (506)
T ss_pred CCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhh
Confidence 99999999777566666522 45566777888899999999999999999999876
No 72
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.93 E-value=2.7e-24 Score=196.46 Aligned_cols=235 Identities=19% Similarity=0.256 Sum_probs=193.4
Q ss_pred ceeeEEEEecC--CEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCC
Q 013184 191 QTQVSTLAVRD--NLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMER 268 (448)
Q Consensus 191 ~~~i~~l~~~~--~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~ 268 (448)
-..|.+|...+ +.+.+|+.|..+.+++...+... .+..+|...++.+.+ +|+.. .+++++.|..|+||....
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l---~~~~Gh~kki~~v~~--~~~~~-~v~~aSad~~i~vws~~~ 292 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQIL---ATLKGHTKKITSVKF--HKDLD-TVITASADEIIRVWSVPL 292 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhhhh---hhccCcceEEEEEEe--ccchh-heeecCCcceEEeecccc
Confidence 34678887733 89999999999999998776643 233444444445444 67654 789999999999999876
Q ss_pred ceEEEEee-cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecC--CCcEEEEEEcCCCCEEEEEeCCCcEE
Q 013184 269 FQLSKHFS-FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGH--LDFSFASAWHPDGRIFATGNQDKTCR 345 (448)
Q Consensus 269 ~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h--~~~v~~~~~~p~g~~l~s~~~d~~i~ 345 (448)
........ |..+|+.+..+|.|.+|+.++.|+...+.|++++..+...... .-.+++.+|||||.+|++|..|+.|+
T Consensus 293 ~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vk 372 (506)
T KOG0289|consen 293 SSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVK 372 (506)
T ss_pred ccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEE
Confidence 66555544 9999999999999999999999999999999999987766532 23478999999999999999999999
Q ss_pred EEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeec-CcCceEEEEEccCCCeEEEEE
Q 013184 346 VWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEID-FFGEISGMTFSPDTEALFIGV 424 (448)
Q Consensus 346 iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~-~~~~v~~~~fspdg~~L~~~~ 424 (448)
|||+.+ ...+..+.+|.++|..++|+.+|-|||+++.|+.|++||++..+....+.. .+.+|.+++|.+.|++|++++
T Consensus 373 iwdlks-~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g 451 (506)
T KOG0289|consen 373 IWDLKS-QTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAG 451 (506)
T ss_pred EEEcCC-ccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeec
Confidence 999987 668899999999999999999999999999999999999998776655443 334799999999999999997
Q ss_pred ecCCcceE
Q 013184 425 WDRTYGSL 432 (448)
Q Consensus 425 ~D~~~~~l 432 (448)
.|-.+-.+
T Consensus 452 ~~l~Vy~~ 459 (506)
T KOG0289|consen 452 SDLQVYIC 459 (506)
T ss_pred ceeEEEEE
Confidence 77544333
No 73
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.93 E-value=1.8e-24 Score=188.73 Aligned_cols=203 Identities=24% Similarity=0.397 Sum_probs=165.9
Q ss_pred eeEEEEe---cCCEEEEEeCCCeEEEEEcCCCC---------ceeEEEeecC---CCCceeeEEEEeCCCCCeeEEEEeC
Q 013184 193 QVSTLAV---RDNLLIAGGFQGELICKYLDQPG---------VSFCSRTTYD---ENAITNAVEIYNSPSGGIHFMASNN 257 (448)
Q Consensus 193 ~i~~l~~---~~~~lvsg~~dg~i~vw~~~~~~---------~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~s~s~ 257 (448)
.|.+|.+ .|+++++|+.||.|.+||+.... ...|.....+ |.-.+..+.|+ |-+.-.+.+++-
T Consensus 45 svNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~Wy--P~DtGmFtssSF 122 (397)
T KOG4283|consen 45 SVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWY--PIDTGMFTSSSF 122 (397)
T ss_pred ccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEe--eecCceeecccc
Confidence 5777777 78999999999999999997644 1122212222 33334445554 433338999999
Q ss_pred CCcEEEEecCCceEEEEeecCCCeeEEEECCC---CCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCC-
Q 013184 258 DCGVRDFDMERFQLSKHFSFPWPVNHTSLSPD---GKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGR- 333 (448)
Q Consensus 258 dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~---~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~- 333 (448)
|.++++||..+.|....|..++.|.+-++||- --++|+|..+..|++.|+.+|...+.|.||.+.|.++.|+|...
T Consensus 123 DhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~ 202 (397)
T KOG4283|consen 123 DHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEW 202 (397)
T ss_pred cceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCcee
Confidence 99999999999999999999999999999992 34788888999999999999999999999999999999999665
Q ss_pred EEEEEeCCCcEEEEEccCCCcceEEE--------------ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCce
Q 013184 334 IFATGNQDKTCRVWDVRNLSKSVAVL--------------KGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFE 397 (448)
Q Consensus 334 ~l~s~~~d~~i~iwd~~~~~~~~~~~--------------~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~ 397 (448)
.|++|+.||.||+||+|....+..++ ..|.+.|+.++|+.+|+++++.+.|..+++|+..+|..
T Consensus 203 vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 203 VLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRN 280 (397)
T ss_pred EEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcc
Confidence 68899999999999998754554444 34667899999999999999999999999999988753
No 74
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=4e-23 Score=182.45 Aligned_cols=231 Identities=19% Similarity=0.211 Sum_probs=187.5
Q ss_pred ceeeEEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeC--CCcEEEEec
Q 013184 191 QTQVSTLAV--RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNN--DCGVRDFDM 266 (448)
Q Consensus 191 ~~~i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~--dg~v~iwd~ 266 (448)
...|.+|.+ +|.+|++++.|.++++|+...+... +....+.--+..+++... +. .++.++. |.+||..++
T Consensus 14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~---~ti~skkyG~~~~~Fth~-~~--~~i~sStk~d~tIryLsl 87 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQV---KTINSKKYGVDLACFTHH-SN--TVIHSSTKEDDTIRYLSL 87 (311)
T ss_pred CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCcee---eEeecccccccEEEEecC-Cc--eEEEccCCCCCceEEEEe
Confidence 457999999 8999999999999999999877643 222233333445666433 22 4555555 889999999
Q ss_pred CCceEEEEee-cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEE
Q 013184 267 ERFQLSKHFS-FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCR 345 (448)
Q Consensus 267 ~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~ 345 (448)
.+.+.++.|. |...|+.++.+|-+..+++++.|++|++||++..++...+..-.. ..++|.|.|-++|++.....|+
T Consensus 88 ~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~AfDp~GLifA~~~~~~~Ik 165 (311)
T KOG1446|consen 88 HDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--PIAAFDPEGLIFALANGSELIK 165 (311)
T ss_pred ecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC--cceeECCCCcEEEEecCCCeEE
Confidence 9999999999 999999999999889999999999999999998888766653333 3589999999999999888999
Q ss_pred EEEccCC-CcceEEEccC---CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCc---eEEEEEccCCC
Q 013184 346 VWDVRNL-SKSVAVLKGN---LGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGE---ISGMTFSPDTE 418 (448)
Q Consensus 346 iwd~~~~-~~~~~~~~~~---~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~---v~~~~fspdg~ 418 (448)
+||+|.. +.+...+.-. ....+.+.|||+|++|+.+...+.+++.|.-+|..+..+..+... ..+.+|+|||+
T Consensus 166 LyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~ 245 (311)
T KOG1446|consen 166 LYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSK 245 (311)
T ss_pred EEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCc
Confidence 9999975 3555555433 567899999999999999999999999999999988777665432 36788999999
Q ss_pred eEEEEEecCCc
Q 013184 419 ALFIGVWDRTY 429 (448)
Q Consensus 419 ~L~~~~~D~~~ 429 (448)
++++|+.||++
T Consensus 246 Fvl~gs~dg~i 256 (311)
T KOG1446|consen 246 FVLSGSDDGTI 256 (311)
T ss_pred EEEEecCCCcE
Confidence 99999998764
No 75
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=2.4e-24 Score=195.62 Aligned_cols=268 Identities=17% Similarity=0.178 Sum_probs=207.5
Q ss_pred eeCCCCeEEEec-CCeEEEEecCCCce-eEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCCCeEEE
Q 013184 140 WSTSKHDVYLMS-HFSIVHWSSLSSKR-TEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQGELIC 215 (448)
Q Consensus 140 ~~~~~~~v~~~~-~~~v~~w~~~~~~~-~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~dg~i~v 215 (448)
.++++..+..++ +.+..+|.+..... +-...+.||..| |..+.+ +.++|++++.+..+.+
T Consensus 232 FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~----------------V~yi~wSPDdryLlaCg~~e~~~l 295 (519)
T KOG0293|consen 232 FSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQP----------------VSYIMWSPDDRYLLACGFDEVLSL 295 (519)
T ss_pred EcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCc----------------eEEEEECCCCCeEEecCchHheee
Confidence 345555566554 56688998765433 334467788775 677766 8999999999999999
Q ss_pred EEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee--cCCCeeEEEECCCCCEE
Q 013184 216 KYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS--FPWPVNHTSLSPDGKLL 293 (448)
Q Consensus 216 w~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~~v~~~~~sp~~~~l 293 (448)
||+.++..... ....+.-.+.+.+| .|+|. .+++|+.|+++..||+.... ....+ ....|.+++..+||+++
T Consensus 296 wDv~tgd~~~~--y~~~~~~S~~sc~W--~pDg~-~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait~Dgk~v 369 (519)
T KOG0293|consen 296 WDVDTGDLRHL--YPSGLGFSVSSCAW--CPDGF-RFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAITYDGKYV 369 (519)
T ss_pred ccCCcchhhhh--cccCcCCCcceeEE--ccCCc-eeEecCCCCcEEEecCCcch-hhcccccccceeEEEEEcCCCcEE
Confidence 99998875321 22222233344444 79987 79999999999999997543 32222 23468999999999999
Q ss_pred EEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCC--eEEEEE
Q 013184 294 VIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGA--IRSIRF 371 (448)
Q Consensus 294 ~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~--v~~l~~ 371 (448)
++.+.|..|++++..+......+. ...++++++.|.+|+++++.-.+..+++||+.. ...+..+.||... +-.-+|
T Consensus 370 l~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e-~~lv~kY~Ghkq~~fiIrSCF 447 (519)
T KOG0293|consen 370 LLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEE-NKLVRKYFGHKQGHFIIRSCF 447 (519)
T ss_pred EEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecch-hhHHHHhhcccccceEEEecc
Confidence 999999999999987765554443 457899999999999999999999999999985 7888888888764 333345
Q ss_pred cC-CCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccC-CCeEEEEEecCCcce
Q 013184 372 TS-DGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPD-TEALFIGVWDRTYGS 431 (448)
Q Consensus 372 sp-~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspd-g~~L~~~~~D~~~~~ 431 (448)
-. +..++|+|+.|+.|+||+..+|+.+..+.+|...|++++|+|. -..+|+|+.|++++.
T Consensus 448 gg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRI 509 (519)
T KOG0293|consen 448 GGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRI 509 (519)
T ss_pred CCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEE
Confidence 43 4489999999999999999999999999999999999999995 567788888887653
No 76
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.93 E-value=6.5e-24 Score=186.38 Aligned_cols=204 Identities=19% Similarity=0.325 Sum_probs=169.1
Q ss_pred eEEEEecCCEEEEEeCCCeEEEEEcCC------C---------CceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCC
Q 013184 194 VSTLAVRDNLLIAGGFQGELICKYLDQ------P---------GVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNND 258 (448)
Q Consensus 194 i~~l~~~~~~lvsg~~dg~i~vw~~~~------~---------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d 258 (448)
+-+++.+|.++++|+.|..|++.++.. . ......++..+|-..++.+.| +|... +|++|+.|
T Consensus 117 ~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~F--HPre~-ILiS~srD 193 (430)
T KOG0640|consen 117 AAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDF--HPRET-ILISGSRD 193 (430)
T ss_pred eeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceee--cchhh-eEEeccCC
Confidence 334444999999999999999999871 1 111235666777788888877 78865 99999999
Q ss_pred CcEEEEecCCceEE---EEeecCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEee---ecCCCcEEEEEEcCCC
Q 013184 259 CGVRDFDMERFQLS---KHFSFPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPL---CGHLDFSFASAWHPDG 332 (448)
Q Consensus 259 g~v~iwd~~~~~~~---~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l---~~h~~~v~~~~~~p~g 332 (448)
++|++||...-... +.+....+|.+++|+|.|.+|++|.+...+++||+.+-++...- ..|.+.|+++.+++.|
T Consensus 194 ~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~ 273 (430)
T KOG0640|consen 194 NTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTG 273 (430)
T ss_pred CeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCc
Confidence 99999999764433 33446678999999999999999999999999999998876543 3699999999999999
Q ss_pred CEEEEEeCCCcEEEEEccCCCcceEEEc-cCC-CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeee
Q 013184 333 RIFATGNQDKTCRVWDVRNLSKSVAVLK-GNL-GAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQE 401 (448)
Q Consensus 333 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~-~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~ 401 (448)
++.+||+.||.|+|||--. .+|+.++. .|. +.|.++.|+.+|+||++.+.|..|++|.+.++..+...
T Consensus 274 ~lYvTaSkDG~IklwDGVS-~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~Y 343 (430)
T KOG0640|consen 274 SLYVTASKDGAIKLWDGVS-NRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEY 343 (430)
T ss_pred cEEEEeccCCcEEeecccc-HHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEE
Confidence 9999999999999999865 78887775 454 47999999999999999999999999999988765444
No 77
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=6.9e-24 Score=186.76 Aligned_cols=230 Identities=16% Similarity=0.238 Sum_probs=189.9
Q ss_pred eeEEEEecCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEE
Q 013184 193 QVSTLAVRDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLS 272 (448)
Q Consensus 193 ~i~~l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~ 272 (448)
.|+++++++.++|+||.|-+|+|||+.+... .....+|.+.++++.++...+ ...|++|+.||.|.+|+.....++
T Consensus 45 sitavAVs~~~~aSGssDetI~IYDm~k~~q---lg~ll~HagsitaL~F~~~~S-~shLlS~sdDG~i~iw~~~~W~~~ 120 (362)
T KOG0294|consen 45 SITALAVSGPYVASGSSDETIHIYDMRKRKQ---LGILLSHAGSITALKFYPPLS-KSHLLSGSDDGHIIIWRVGSWELL 120 (362)
T ss_pred ceeEEEecceeEeccCCCCcEEEEeccchhh---hcceeccccceEEEEecCCcc-hhheeeecCCCcEEEEEcCCeEEe
Confidence 5999999999999999999999999987543 233346678888888854333 338999999999999999999999
Q ss_pred EEee-cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccC
Q 013184 273 KHFS-FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRN 351 (448)
Q Consensus 273 ~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~ 351 (448)
..++ |.+.|+.++++|.+++.++.+.|+.+++||+-+|+.-..+.- ......+.|+|.|.+++.+.+++ |-||.+.+
T Consensus 121 ~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~at~v~w~~~Gd~F~v~~~~~-i~i~q~d~ 198 (362)
T KOG0294|consen 121 KSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL-KNKATLVSWSPQGDHFVVSGRNK-IDIYQLDN 198 (362)
T ss_pred eeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc-CCcceeeEEcCCCCEEEEEeccE-EEEEeccc
Confidence 9998 999999999999999999999999999999999887555442 22334599999999999998886 99999875
Q ss_pred CCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEE--ccCCCeEEEEEecCCc
Q 013184 352 LSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTF--SPDTEALFIGVWDRTY 429 (448)
Q Consensus 352 ~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~f--spdg~~L~~~~~D~~~ 429 (448)
......+.. ...+.++.|- ++.+|++|..++.|.+||..+..+...+.+|...|.++.+ .|++.+|++++.||.+
T Consensus 199 -A~v~~~i~~-~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I 275 (362)
T KOG0294|consen 199 -ASVFREIEN-PKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFI 275 (362)
T ss_pred -HhHhhhhhc-cccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceE
Confidence 444444432 2456677775 5789999999999999999988888889999999999985 4678999999999876
Q ss_pred ce
Q 013184 430 GS 431 (448)
Q Consensus 430 ~~ 431 (448)
..
T Consensus 276 ~v 277 (362)
T KOG0294|consen 276 KV 277 (362)
T ss_pred EE
Confidence 53
No 78
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.93 E-value=1.9e-24 Score=201.32 Aligned_cols=242 Identities=19% Similarity=0.272 Sum_probs=179.8
Q ss_pred eeEEEEe--cCCEEEEEeCCCeEEEEEcCCCCcee--EEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCC
Q 013184 193 QVSTLAV--RDNLLIAGGFQGELICKYLDQPGVSF--CSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMER 268 (448)
Q Consensus 193 ~i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~ 268 (448)
.|+++++ .|..|++|+.|-.|++||+....... -..+.......++++.+ ++.|.. |++.+.....+|+|...
T Consensus 169 ~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~y--s~Tg~~-iLvvsg~aqakl~DRdG 245 (641)
T KOG0772|consen 169 IVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQY--SVTGDQ-ILVVSGSAQAKLLDRDG 245 (641)
T ss_pred EEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeee--cCCCCe-EEEEecCcceeEEccCC
Confidence 5888888 78999999999999999998655221 12233344555677777 888874 44455567899999877
Q ss_pred ceEEEEe-------------ecCCCeeEEEECC-CCCEEEEEecCCcEEEEECCCCc-eeEeee-----cCCCcEEEEEE
Q 013184 269 FQLSKHF-------------SFPWPVNHTSLSP-DGKLLVIVGDNPEGILVDSQTGK-AIMPLC-----GHLDFSFASAW 328 (448)
Q Consensus 269 ~~~~~~~-------------~~~~~v~~~~~sp-~~~~l~~~~~d~~i~i~d~~~~~-~~~~l~-----~h~~~v~~~~~ 328 (448)
.++.... .|...++|.+|+| +...+++++.||+++|||+...+ ..+.++ +..-.++.|+|
T Consensus 246 ~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~ 325 (641)
T KOG0772|consen 246 FEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAW 325 (641)
T ss_pred ceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeec
Confidence 6655332 2667899999999 45678999999999999987654 233333 33456889999
Q ss_pred cCCCCEEEEEeCCCcEEEEEccCCC--cceEEEccCCC--CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCcee-eeeec
Q 013184 329 HPDGRIFATGNQDKTCRVWDVRNLS--KSVAVLKGNLG--AIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEK-EQEID 403 (448)
Q Consensus 329 ~p~g~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~--~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~-~~~~~ 403 (448)
+|+|++||+|..||+|.+|+.++.. .....-.+|.. .|+||.||++|++|++-+.|+++++||++..+.. ....+
T Consensus 326 nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tg 405 (641)
T KOG0772|consen 326 NRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTG 405 (641)
T ss_pred CCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcC
Confidence 9999999999999999999986533 22344556776 8999999999999999999999999999876543 22222
Q ss_pred C--cCceEEEEEccCCCeEEEEEe---cCCcceEEEEec
Q 013184 404 F--FGEISGMTFSPDTEALFIGVW---DRTYGSLLQYNR 437 (448)
Q Consensus 404 ~--~~~v~~~~fspdg~~L~~~~~---D~~~~~ll~~~~ 437 (448)
. ..+-+.++|||+.+.|++|.. +.+.|.|..|.+
T Consensus 406 L~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~ 444 (641)
T KOG0772|consen 406 LPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDR 444 (641)
T ss_pred CCccCCCCccccCCCceEEEecccccCCCCCceEEEEec
Confidence 2 234678999999999998843 233444444444
No 79
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=3.3e-24 Score=211.12 Aligned_cols=231 Identities=17% Similarity=0.162 Sum_probs=179.9
Q ss_pred ceeeEEEEe--cCCEEEEEeCCCeEEEEEcCCCC----------------------------c-e--------------e
Q 013184 191 QTQVSTLAV--RDNLLIAGGFQGELICKYLDQPG----------------------------V-S--------------F 225 (448)
Q Consensus 191 ~~~i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~----------------------------~-~--------------~ 225 (448)
...|++|.| +|++||+||.||.|+||.+.... . . .
T Consensus 267 ~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~ 346 (712)
T KOG0283|consen 267 KGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSP 346 (712)
T ss_pred CCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCc
Confidence 347999999 99999999999999999986500 0 0 0
Q ss_pred EEE--------------eecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEeecCCCeeEEEECC-CC
Q 013184 226 CSR--------------TTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFSFPWPVNHTSLSP-DG 290 (448)
Q Consensus 226 ~~~--------------~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp-~~ 290 (448)
+.. ...+|.+-+ +++.|+.++ +|++++.|.+||+|++...+++..|.|...|+|++|+| |.
T Consensus 347 ~~~~p~~~f~f~ekP~~ef~GHt~DI--LDlSWSKn~--fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDD 422 (712)
T KOG0283|consen 347 CVLLPLKAFVFSEKPFCEFKGHTADI--LDLSWSKNN--FLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDD 422 (712)
T ss_pred cccCCCccccccccchhhhhccchhh--eecccccCC--eeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCC
Confidence 000 011222222 344446655 89999999999999999999999999999999999999 89
Q ss_pred CEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEc--cC------
Q 013184 291 KLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLK--GN------ 362 (448)
Q Consensus 291 ~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~--~~------ 362 (448)
+++++|+-|+.|+||++...+.+.-.. -.+.|++++|.|+|++.+.|+.+|.|++|++.. .+.+.... .+
T Consensus 423 ryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~-lk~~~~~~I~~~~~Kk~~ 500 (712)
T KOG0283|consen 423 RYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEG-LKLVSDFHIRLHNKKKKQ 500 (712)
T ss_pred CcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEeccEEEEEEccC-CeEEEeeeEeeccCcccc
Confidence 999999999999999998877655443 348899999999999999999999999999975 33332221 11
Q ss_pred CCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCCceeeeeecCc--CceEEEEEccCCCeEEEEEecC
Q 013184 363 LGAIRSIRFTSDG-NFMAMAEPADFVHVYDAKNGFEKEQEIDFF--GEISGMTFSPDTEALFIGVWDR 427 (448)
Q Consensus 363 ~~~v~~l~~sp~g-~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~--~~v~~~~fspdg~~L~~~~~D~ 427 (448)
...|+.+.|.|.. ..|++.+.|..|+|||.+....+..+.++. ..-...+|+.||++|++++.|.
T Consensus 501 ~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs 568 (712)
T KOG0283|consen 501 GKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDS 568 (712)
T ss_pred CceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCc
Confidence 2279999999844 346667889999999998877777777643 3345778999999999999763
No 80
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.93 E-value=1.8e-24 Score=200.82 Aligned_cols=264 Identities=16% Similarity=0.209 Sum_probs=212.9
Q ss_pred CCCCeEEEecCCeEEEEecCCCce-eEEEecCCCCCCCCCCCCCcccCC-cceeeEEEEe--cCCEEEEEeCCCeEEEEE
Q 013184 142 TSKHDVYLMSHFSIVHWSSLSSKR-TEVLDVSGHVAPCEKHPGNLLEGF-TQTQVSTLAV--RDNLLIAGGFQGELICKY 217 (448)
Q Consensus 142 ~~~~~v~~~~~~~v~~w~~~~~~~-~~~~~~~gh~~p~~~~~~~~~~~~-~~~~i~~l~~--~~~~lvsg~~dg~i~vw~ 217 (448)
.....||+++.+.|++||+..... ..+..+ .-+ ....|.++.. +++.|++|+.-.++.|||
T Consensus 429 ~~trhVyTgGkgcVKVWdis~pg~k~PvsqL---------------dcl~rdnyiRSckL~pdgrtLivGGeastlsiWD 493 (705)
T KOG0639|consen 429 NPTRHVYTGGKGCVKVWDISQPGNKSPVSQL---------------DCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWD 493 (705)
T ss_pred CCcceeEecCCCeEEEeeccCCCCCCccccc---------------cccCcccceeeeEecCCCceEEeccccceeeeee
Confidence 344679999999999999754311 111111 111 1123455444 999999999999999999
Q ss_pred cCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee-cCCCeeEEEECCCCCEEEEE
Q 013184 218 LDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS-FPWPVNHTSLSPDGKLLVIV 296 (448)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~ 296 (448)
+..+.......++... ..+.++++ +|+.+ +.+++..||.|.|||+....+++.|+ |...+.|+.++++|..|-+|
T Consensus 494 LAapTprikaeltssa-paCyALa~--spDak-vcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTG 569 (705)
T KOG0639|consen 494 LAAPTPRIKAELTSSA-PACYALAI--SPDAK-VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTG 569 (705)
T ss_pred ccCCCcchhhhcCCcc-hhhhhhhc--CCccc-eeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecC
Confidence 9988754333333221 22334545 88876 78888899999999999999999999 99999999999999999999
Q ss_pred ecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCC
Q 013184 297 GDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGN 376 (448)
Q Consensus 297 ~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~ 376 (448)
+-|++|+.||+++++.++... ....|+++...|++.+++.|-..+.+.|-... +.....+..|.+.|.+++|.+-|+
T Consensus 570 GlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~s--kp~kyqlhlheScVLSlKFa~cGk 646 (705)
T KOG0639|consen 570 GLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS--KPEKYQLHLHESCVLSLKFAYCGK 646 (705)
T ss_pred CCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecC--CccceeecccccEEEEEEecccCc
Confidence 999999999999988765443 45789999999999999999999998888775 566677888999999999999999
Q ss_pred EEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEecCC
Q 013184 377 FMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDRT 428 (448)
Q Consensus 377 ~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~ 428 (448)
++++.+.|+.+..|.+.-|..+.+... .+.|.++.+|.|.+++++|+.|..
T Consensus 647 wfvStGkDnlLnawrtPyGasiFqskE-~SsVlsCDIS~ddkyIVTGSGdkk 697 (705)
T KOG0639|consen 647 WFVSTGKDNLLNAWRTPYGASIFQSKE-SSSVLSCDISFDDKYIVTGSGDKK 697 (705)
T ss_pred eeeecCchhhhhhccCccccceeeccc-cCcceeeeeccCceEEEecCCCcc
Confidence 999999999999999999888877653 578999999999999999998854
No 81
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.2e-24 Score=186.26 Aligned_cols=234 Identities=15% Similarity=0.204 Sum_probs=189.0
Q ss_pred cceeeeCCCCeE-EEe-cCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe---cCCEEEEEeCC
Q 013184 136 RNLVWSTSKHDV-YLM-SHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV---RDNLLIAGGFQ 210 (448)
Q Consensus 136 r~l~~~~~~~~v-~~~-~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~---~~~~lvsg~~d 210 (448)
-.+.|+.+...+ +.+ +++++++|+ .+....++..++.|.. .|.++.+ ....+++++.|
T Consensus 64 fdV~Wse~~e~~~~~a~GDGSLrl~d-~~~~s~Pi~~~kEH~~----------------EV~Svdwn~~~r~~~ltsSWD 126 (311)
T KOG0277|consen 64 FDVAWSENHENQVIAASGDGSLRLFD-LTMPSKPIHKFKEHKR----------------EVYSVDWNTVRRRIFLTSSWD 126 (311)
T ss_pred eEeeecCCCcceEEEEecCceEEEec-cCCCCcchhHHHhhhh----------------heEEeccccccceeEEeeccC
Confidence 345688776544 443 688999999 4444455555555544 5888888 66788899999
Q ss_pred CeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCC-ceEEEEee-cCCCeeEEEECC
Q 013184 211 GELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMER-FQLSKHFS-FPWPVNHTSLSP 288 (448)
Q Consensus 211 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~-~~~~~~~~-~~~~v~~~~~sp 288 (448)
|+|++|+...+... .+..+|+..+....+ +|....+++++|.|+++++||++. ++... ++ |...|.|+.|+.
T Consensus 127 ~TiKLW~~~r~~Sv---~Tf~gh~~~Iy~a~~--sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~k 200 (311)
T KOG0277|consen 127 GTIKLWDPNRPNSV---QTFNGHNSCIYQAAF--SPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEAHNSEILCCDWSK 200 (311)
T ss_pred CceEeecCCCCcce---EeecCCccEEEEEec--CCCCCCeEEEccCCceEEEEEecCCCceeE-EEeccceeEeecccc
Confidence 99999998877643 334456666656555 888888999999999999999875 55555 55 888999999998
Q ss_pred -CCCEEEEEecCCcEEEEECCCCc-eeEeeecCCCcEEEEEEcCCC-CEEEEEeCCCcEEEEEccCCCcceEEEccCCCC
Q 013184 289 -DGKLLVIVGDNPEGILVDSQTGK-AIMPLCGHLDFSFASAWHPDG-RIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGA 365 (448)
Q Consensus 289 -~~~~l~~~~~d~~i~i~d~~~~~-~~~~l~~h~~~v~~~~~~p~g-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 365 (448)
+...+++|+.|+.|++||++.-+ ++..+.+|.-.|..+.|||.. .+||+++.|-++||||......++.+..-|..-
T Consensus 201 y~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEF 280 (311)
T KOG0277|consen 201 YNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEF 280 (311)
T ss_pred cCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceE
Confidence 77889999999999999998754 578889999999999999954 589999999999999997656777788888888
Q ss_pred eEEEEEcC-CCCEEEEEeCCCeEEEEEC
Q 013184 366 IRSIRFTS-DGNFMAMAEPADFVHVYDA 392 (448)
Q Consensus 366 v~~l~~sp-~g~~l~s~~~d~~v~vwd~ 392 (448)
+..+.||+ ++.++|+.+-|+.++||+-
T Consensus 281 v~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 281 VCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred EeccccccccCceeeecccccceeeecc
Confidence 99999998 5679999999999999983
No 82
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.1e-24 Score=207.97 Aligned_cols=271 Identities=14% Similarity=0.161 Sum_probs=215.1
Q ss_pred eCCCCeEEEec-CCeEEEEecCCCcee----EEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCCCeE
Q 013184 141 STSKHDVYLMS-HFSIVHWSSLSSKRT----EVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQGEL 213 (448)
Q Consensus 141 ~~~~~~v~~~~-~~~v~~w~~~~~~~~----~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~dg~i 213 (448)
++.+..+|.++ |+.|+.|+....... .+..+..|.. -|..++. +++.|++++.|-+|
T Consensus 34 a~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsD----------------WVNDiiL~~~~~tlIS~SsDtTV 97 (735)
T KOG0308|consen 34 APNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSD----------------WVNDIILCGNGKTLISASSDTTV 97 (735)
T ss_pred CCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHh----------------HHhhHHhhcCCCceEEecCCceE
Confidence 34445566664 778999997432221 1223332222 2455544 78899999999999
Q ss_pred EEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCc--eEEEEe----------ecCCCe
Q 013184 214 ICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERF--QLSKHF----------SFPWPV 281 (448)
Q Consensus 214 ~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~--~~~~~~----------~~~~~v 281 (448)
++|+..... ..|..+...|...+.++.+. .....++++|+-|+.|.+||++++ +.+..+ .+..+|
T Consensus 98 K~W~~~~~~-~~c~stir~H~DYVkcla~~--ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~si 174 (735)
T KOG0308|consen 98 KVWNAHKDN-TFCMSTIRTHKDYVKCLAYI--AKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSI 174 (735)
T ss_pred EEeecccCc-chhHhhhhcccchheeeeec--ccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccce
Confidence 999998776 67777888888888888773 334458999999999999999977 233222 245679
Q ss_pred eEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEcc
Q 013184 282 NHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKG 361 (448)
Q Consensus 282 ~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 361 (448)
.+++.++.|..|+.|+..+.+++||.++++.+..++||.+-|.++..++||..+++++.||+|++||+.. .+|+.++..
T Consensus 175 YSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgq-QrCl~T~~v 253 (735)
T KOG0308|consen 175 YSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQ-QRCLATYIV 253 (735)
T ss_pred eeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccc-cceeeeEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987 899999999
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEecCCcce
Q 013184 362 NLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDRTYGS 431 (448)
Q Consensus 362 ~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~~~~ 431 (448)
|...|.++..+|+=.++.+|+.|+.|..=|+++......+.....+|..+..+...+-+-++.+|+.+.+
T Consensus 254 H~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~r 323 (735)
T KOG0308|consen 254 HKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKR 323 (735)
T ss_pred ccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeecccccee
Confidence 9999999999999999999999999999999885433333334556777777755555577777776643
No 83
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=3.1e-24 Score=182.65 Aligned_cols=233 Identities=16% Similarity=0.177 Sum_probs=187.0
Q ss_pred EEecCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee
Q 013184 197 LAVRDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS 276 (448)
Q Consensus 197 l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~ 276 (448)
|.+-|+.|++++.|++|+|+.....+.........+|.+++.-+.+.. |.-+.+|++++.||.|.||.-++++..+...
T Consensus 19 lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wah-Pk~G~iLAScsYDgkVIiWke~~g~w~k~~e 97 (299)
T KOG1332|consen 19 LDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAH-PKFGTILASCSYDGKVIIWKEENGRWTKAYE 97 (299)
T ss_pred hhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecc-cccCcEeeEeecCceEEEEecCCCchhhhhh
Confidence 445789999999999999999998876444555667888888888864 4444599999999999999998886555444
Q ss_pred ---cCCCeeEEEECC--CCCEEEEEecCCcEEEEECCCC-c--eeEeeecCCCcEEEEEEcCC---C-----------CE
Q 013184 277 ---FPWPVNHTSLSP--DGKLLVIVGDNPEGILVDSQTG-K--AIMPLCGHLDFSFASAWHPD---G-----------RI 334 (448)
Q Consensus 277 ---~~~~v~~~~~sp--~~~~l~~~~~d~~i~i~d~~~~-~--~~~~l~~h~~~v~~~~~~p~---g-----------~~ 334 (448)
|...|++++|.| -|-.|++++.||.|.|.+.++. . .......|.-.|++++|.|- | +.
T Consensus 98 ~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~kr 177 (299)
T KOG1332|consen 98 HAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKR 177 (299)
T ss_pred hhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccce
Confidence 889999999999 5778999999999999987654 2 22335679999999999995 5 56
Q ss_pred EEEEeCCCcEEEEEccCCC-cceEEEccCCCCeEEEEEcCCC----CEEEEEeCCCeEEEEECCCCce---eeeeecCcC
Q 013184 335 FATGNQDKTCRVWDVRNLS-KSVAVLKGNLGAIRSIRFTSDG----NFMAMAEPADFVHVYDAKNGFE---KEQEIDFFG 406 (448)
Q Consensus 335 l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~v~~l~~sp~g----~~l~s~~~d~~v~vwd~~~~~~---~~~~~~~~~ 406 (448)
|++|+.|..|+||+..+.. ..-.+|.+|...|+.++|.|.- .+||+++.||+|.||-...... ...+..+..
T Consensus 178 lvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~ 257 (299)
T KOG1332|consen 178 LVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPD 257 (299)
T ss_pred eeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCc
Confidence 9999999999999997632 2334589999999999999953 5899999999999998763211 122334567
Q ss_pred ceEEEEEccCCCeEEEEEecCCcc
Q 013184 407 EISGMTFSPDTEALFIGVWDRTYG 430 (448)
Q Consensus 407 ~v~~~~fspdg~~L~~~~~D~~~~ 430 (448)
.+..++||+.|..|++++.|..+.
T Consensus 258 ~~w~vSWS~sGn~LaVs~GdNkvt 281 (299)
T KOG1332|consen 258 VVWRVSWSLSGNILAVSGGDNKVT 281 (299)
T ss_pred ceEEEEEeccccEEEEecCCcEEE
Confidence 899999999999999998886643
No 84
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=2.2e-24 Score=199.91 Aligned_cols=230 Identities=23% Similarity=0.313 Sum_probs=182.8
Q ss_pred eeEEEEecC----CEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCC
Q 013184 193 QVSTLAVRD----NLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMER 268 (448)
Q Consensus 193 ~i~~l~~~~----~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~ 268 (448)
.|+++++.. +..+++| -.+.+++..+.... +....-...+.+++| -.+|. ++++|...|.|+|||+.+
T Consensus 28 ~vssl~fsp~~P~d~aVt~S--~rvqly~~~~~~~~---k~~srFk~~v~s~~f--R~DG~-LlaaGD~sG~V~vfD~k~ 99 (487)
T KOG0310|consen 28 SVSSLCFSPKHPYDFAVTSS--VRVQLYSSVTRSVR---KTFSRFKDVVYSVDF--RSDGR-LLAAGDESGHVKVFDMKS 99 (487)
T ss_pred cceeEecCCCCCCceEEecc--cEEEEEecchhhhh---hhHHhhccceeEEEe--ecCCe-EEEccCCcCcEEEecccc
Confidence 588888833 4445444 35677877655432 111222344667776 45554 899999999999999877
Q ss_pred ceEEEEee-cCCCeeEEEECC-CCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcC-CCCEEEEEeCCCcEE
Q 013184 269 FQLSKHFS-FPWPVNHTSLSP-DGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHP-DGRIFATGNQDKTCR 345 (448)
Q Consensus 269 ~~~~~~~~-~~~~v~~~~~sp-~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p-~g~~l~s~~~d~~i~ 345 (448)
..+++.+. |..+|..+.|+| ++..+++|++|+.+++||+.+......+.+|+++|.|.+|+| ++..++||+.||+||
T Consensus 100 r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vr 179 (487)
T KOG0310|consen 100 RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVR 179 (487)
T ss_pred HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEE
Confidence 66777776 999999999999 556677888999999999999887668999999999999999 566999999999999
Q ss_pred EEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCcee-eeeecCcCceEEEEEccCCCeEEEEE
Q 013184 346 VWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEK-EQEIDFFGEISGMTFSPDTEALFIGV 424 (448)
Q Consensus 346 iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~-~~~~~~~~~v~~~~fspdg~~L~~~~ 424 (448)
+||+|.....+..+. |..+|.++.+-|.|..+|+|+.. .|+|||+.+|... .....|...|+++++..++..|++|+
T Consensus 180 l~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~s 257 (487)
T KOG0310|consen 180 LWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAGGN-SVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGS 257 (487)
T ss_pred EEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcCCC-eEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecc
Confidence 999998555666665 88899999999999999998754 7999999966554 44445999999999999999999999
Q ss_pred ecCCcceE
Q 013184 425 WDRTYGSL 432 (448)
Q Consensus 425 ~D~~~~~l 432 (448)
-|+.++..
T Consensus 258 LD~~VKVf 265 (487)
T KOG0310|consen 258 LDRHVKVF 265 (487)
T ss_pred cccceEEE
Confidence 99876543
No 85
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.8e-22 Score=177.11 Aligned_cols=261 Identities=16% Similarity=0.175 Sum_probs=205.3
Q ss_pred eeCCCCeEEEe-cCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEecCCEEEEEeC--CCeEEEE
Q 013184 140 WSTSKHDVYLM-SHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAVRDNLLIAGGF--QGELICK 216 (448)
Q Consensus 140 ~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~~~~~lvsg~~--dg~i~vw 216 (448)
...++..+..+ .+.++++||..++.....+...... ..+.++....+.++.++. |.+|+..
T Consensus 22 fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG----------------~~~~~Fth~~~~~i~sStk~d~tIryL 85 (311)
T KOG1446|consen 22 FSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYG----------------VDLACFTHHSNTVIHSSTKEDDTIRYL 85 (311)
T ss_pred ecCCCCEEEEecCCCeEEEEEcCCCceeeEeeccccc----------------ccEEEEecCCceEEEccCCCCCceEEE
Confidence 34445555554 4568999999888777776554111 123444446666777766 8899999
Q ss_pred EcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEeecCCCeeEEEECCCCCEEEEE
Q 013184 217 YLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFSFPWPVNHTSLSPDGKLLVIV 296 (448)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~ 296 (448)
++.+.+. .+...+|...++.+++ +|-+. .+++++.|++||+||++..++...+...+. ..++|.|+|-++|++
T Consensus 86 sl~dNky---lRYF~GH~~~V~sL~~--sP~~d-~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~-pi~AfDp~GLifA~~ 158 (311)
T KOG1446|consen 86 SLHDNKY---LRYFPGHKKRVNSLSV--SPKDD-TFLSSSLDKTVRLWDLRVKKCQGLLNLSGR-PIAAFDPEGLIFALA 158 (311)
T ss_pred EeecCce---EEEcCCCCceEEEEEe--cCCCC-eEEecccCCeEEeeEecCCCCceEEecCCC-cceeECCCCcEEEEe
Confidence 9988764 5666788888889988 88875 899999999999999998887776664332 467899999999999
Q ss_pred ecCCcEEEEECCCC--ceeEeee---cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCe---EE
Q 013184 297 GDNPEGILVDSQTG--KAIMPLC---GHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAI---RS 368 (448)
Q Consensus 297 ~~d~~i~i~d~~~~--~~~~~l~---~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v---~~ 368 (448)
.....|++||++.- .+..++. +.......+.|+|||++++.+...+.+.+.|.-. +..+..+..+...- -+
T Consensus 159 ~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~-G~~~~tfs~~~~~~~~~~~ 237 (311)
T KOG1446|consen 159 NGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFD-GTVKSTFSGYPNAGNLPLS 237 (311)
T ss_pred cCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccC-CcEeeeEeeccCCCCccee
Confidence 98889999999864 2333332 3456788999999999999999999999999976 67777777665432 57
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeec-CcCceEEEEEccCCCeEEEEE
Q 013184 369 IRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEID-FFGEISGMTFSPDTEALFIGV 424 (448)
Q Consensus 369 l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~-~~~~v~~~~fspdg~~L~~~~ 424 (448)
..|+|||+++++|+.||+|++|++.++..+..+.+ +.+++.++.|+|.-..+++++
T Consensus 238 a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~ 294 (311)
T KOG1446|consen 238 ATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS 294 (311)
T ss_pred EEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC
Confidence 88999999999999999999999999999988887 789999999999877777765
No 86
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=6.6e-23 Score=188.89 Aligned_cols=288 Identities=14% Similarity=0.203 Sum_probs=214.9
Q ss_pred eeeeCCCCeEEEec-CCeEEEEecCCCcee-EEEe----cCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeC
Q 013184 138 LVWSTSKHDVYLMS-HFSIVHWSSLSSKRT-EVLD----VSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGF 209 (448)
Q Consensus 138 l~~~~~~~~v~~~~-~~~v~~w~~~~~~~~-~~~~----~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~ 209 (448)
++..+....+|.++ +++|..|+..++... .++. +..|..|...+. .-+...|.++++ ++++|++|+.
T Consensus 148 vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r-----~~h~keil~~avS~Dgkylatgg~ 222 (479)
T KOG0299|consen 148 VALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESR-----KGHVKEILTLAVSSDGKYLATGGR 222 (479)
T ss_pred EEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCccc-----ccccceeEEEEEcCCCcEEEecCC
Confidence 34445556677764 667999999887654 2222 122444432221 122346777777 9999999999
Q ss_pred CCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee-cCCCeeEEEECC
Q 013184 210 QGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS-FPWPVNHTSLSP 288 (448)
Q Consensus 210 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp 288 (448)
|..|.||+.++..... ...+|.+.+.+++| ..|...+++++.|++|++|+++....+.++- |+..|..+....
T Consensus 223 d~~v~Iw~~~t~ehv~---~~~ghr~~V~~L~f---r~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~ 296 (479)
T KOG0299|consen 223 DRHVQIWDCDTLEHVK---VFKGHRGAVSSLAF---RKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALS 296 (479)
T ss_pred CceEEEecCcccchhh---cccccccceeeeee---ecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhc
Confidence 9999999999877543 34567777788888 4555579999999999999998877666554 999999999988
Q ss_pred CCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEc-cC-----
Q 013184 289 DGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLK-GN----- 362 (448)
Q Consensus 289 ~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~----- 362 (448)
-.+.+-+|+.|+++++|.+.. .....+.+|.+.+-|++|-. ..++++|+.+|.|.+|++.+ .+++.+.. +|
T Consensus 297 reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~~K-Kkplf~~~~AHgv~~~ 373 (479)
T KOG0299|consen 297 RERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSLLK-KKPLFTSRLAHGVIPE 373 (479)
T ss_pred ccceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEec-ccceeeccCCceEEEeeecc-cCceeEeeccccccCC
Confidence 888888888999999999843 33345778999999999974 56899999999999999976 66655432 12
Q ss_pred ------CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCcee---eeeecCcCceEEEEEccCCCeEEEE-EecCCcceE
Q 013184 363 ------LGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEK---EQEIDFFGEISGMTFSPDTEALFIG-VWDRTYGSL 432 (448)
Q Consensus 363 ------~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~---~~~~~~~~~v~~~~fspdg~~L~~~-~~D~~~~~l 432 (448)
..+|++++..|...++|+|+.+|.|++|-+..+... .......+.|++++|+++|+.|++| +.....|+.
T Consensus 374 ~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 374 LDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGIGKEHRLGRW 453 (479)
T ss_pred ccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEeccccccccee
Confidence 127899999999999999999999999999988432 2222367889999999999977777 444555555
Q ss_pred EEEeccc
Q 013184 433 LQYNRCR 439 (448)
Q Consensus 433 l~~~~~~ 439 (448)
.......
T Consensus 454 ~~~k~~~ 460 (479)
T KOG0299|consen 454 WCLKSGK 460 (479)
T ss_pred eEeeccc
Confidence 5444443
No 87
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=1.3e-24 Score=194.45 Aligned_cols=251 Identities=15% Similarity=0.223 Sum_probs=198.4
Q ss_pred cCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEecCCEEEEEeCCCeEEEEEcCCCCceeEEEee
Q 013184 151 SHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAVRDNLLIAGGFQGELICKYLDQPGVSFCSRTT 230 (448)
Q Consensus 151 ~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~ 230 (448)
.||.|++||+.. ..+...+..|..+ |..|+++...++++|.|.+|+.|-++.+- ....
T Consensus 87 ~DG~VkiWnlsq--R~~~~~f~AH~G~----------------V~Gi~v~~~~~~tvgdDKtvK~wk~~~~p----~~ti 144 (433)
T KOG0268|consen 87 CDGEVKIWNLSQ--RECIRTFKAHEGL----------------VRGICVTQTSFFTVGDDKTVKQWKIDGPP----LHTI 144 (433)
T ss_pred cCceEEEEehhh--hhhhheeecccCc----------------eeeEEecccceEEecCCcceeeeeccCCc----ceee
Confidence 488999999854 3344455555543 88888877999999999999999987742 1111
Q ss_pred cCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee-cCCCeeEEEECC-CCCEEEEEecCCcEEEEECC
Q 013184 231 YDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS-FPWPVNHTSLSP-DGKLLVIVGDNPEGILVDSQ 308 (448)
Q Consensus 231 ~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp-~~~~l~~~~~d~~i~i~d~~ 308 (448)
..+.....++- ... ...+++|+. .|.|||.+...+++.+. ....|.++.|+| .-..|++++.|+.|.+||++
T Consensus 145 -lg~s~~~gIdh--~~~-~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R 218 (433)
T KOG0268|consen 145 -LGKSVYLGIDH--HRK-NSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLR 218 (433)
T ss_pred -ecccccccccc--ccc-cccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecc
Confidence 12223333333 222 236888875 59999999989999988 556799999999 55677788899999999999
Q ss_pred CCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 013184 309 TGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVH 388 (448)
Q Consensus 309 ~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~ 388 (448)
++++++.+. -......++|+|.+-.|.+|+.|..+..+|+|....++.+..+|.++|.++.|||.|+-+++|+.|.+|+
T Consensus 219 ~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIR 297 (433)
T KOG0268|consen 219 QASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIR 297 (433)
T ss_pred cCCccceee-eeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEE
Confidence 999887654 2344568999998888999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCceeeeeec-CcCceEEEEEccCCCeEEEEEecCCcc
Q 013184 389 VYDAKNGFEKEQEID-FFGEISGMTFSPDTEALFIGVWDRTYG 430 (448)
Q Consensus 389 vwd~~~~~~~~~~~~-~~~~v~~~~fspdg~~L~~~~~D~~~~ 430 (448)
||.+..+........ --..|.++.||.|.+|+++|+.|+.++
T Consensus 298 If~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvR 340 (433)
T KOG0268|consen 298 IFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVR 340 (433)
T ss_pred EeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCccee
Confidence 999987754322211 114699999999999999999998754
No 88
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.92 E-value=7.6e-23 Score=198.37 Aligned_cols=268 Identities=19% Similarity=0.213 Sum_probs=210.3
Q ss_pred eEEEecCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe-cCCEEEEEeCCCeEEEEEcCCCCce
Q 013184 146 DVYLMSHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV-RDNLLIAGGFQGELICKYLDQPGVS 224 (448)
Q Consensus 146 ~v~~~~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~-~~~~lvsg~~dg~i~vw~~~~~~~~ 224 (448)
.+++.+++++..+.+.. .+...|.....+.+..+.++..|.++++ +.+.++..+..+.|++|+..+....
T Consensus 337 ~lv~l~nNtv~~ysl~~---------s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kci 407 (888)
T KOG0306|consen 337 TLVLLANNTVEWYSLEN---------SGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCI 407 (888)
T ss_pred eEEEeecCceEEEEecc---------CCCCCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCccee
Confidence 44555667777666533 1111122222233333444557999999 6666666777889999998876543
Q ss_pred eEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee-cCCCeeEEEECCCCCEEEEEecCCcEE
Q 013184 225 FCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS-FPWPVNHTSLSPDGKLLVIVGDNPEGI 303 (448)
Q Consensus 225 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~ 303 (448)
++.... . .++..+.|.+. ++++|...|.+.+||+.+...+.+++ |.+.|++++.+|+++.+++|+.|.+|+
T Consensus 408 ---RTi~~~--y--~l~~~Fvpgd~-~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVk 479 (888)
T KOG0306|consen 408 ---RTITCG--Y--ILASKFVPGDR-YIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVK 479 (888)
T ss_pred ---EEeccc--c--EEEEEecCCCc-eEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEE
Confidence 332221 3 33334467665 89999999999999999998888887 999999999999999999999999999
Q ss_pred EEECCC-----Cce--e------EeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEEE
Q 013184 304 LVDSQT-----GKA--I------MPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIR 370 (448)
Q Consensus 304 i~d~~~-----~~~--~------~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~ 370 (448)
+||... |.. + .+++ -.+.|.|+.+||||++||.+=-|.+|+||-+.+ -+-...+-||.-||.|+.
T Consensus 480 fWdf~l~~~~~gt~~k~lsl~~~rtLe-l~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDt-lKFflsLYGHkLPV~smD 557 (888)
T KOG0306|consen 480 FWDFKLVVSVPGTQKKVLSLKHTRTLE-LEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDT-LKFFLSLYGHKLPVLSMD 557 (888)
T ss_pred EEeEEEEeccCcccceeeeeccceEEe-ccccEEEEEEcCCCcEEEEEeccCeEEEEEecc-eeeeeeecccccceeEEe
Confidence 999631 111 1 1122 357799999999999999999999999999976 566778899999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEecCCcceE
Q 013184 371 FTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDRTYGSL 432 (448)
Q Consensus 371 ~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~~~~l 432 (448)
.|||++.+++|+.|..|+||-+.-|.+.+.+.+|...|.++.|-|....+++++.|+.++..
T Consensus 558 IS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqW 619 (888)
T KOG0306|consen 558 ISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQW 619 (888)
T ss_pred ccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEee
Confidence 99999999999999999999999999999999999999999999999999999999776644
No 89
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=5.8e-23 Score=179.97 Aligned_cols=232 Identities=18% Similarity=0.159 Sum_probs=185.0
Q ss_pred eeeEEEEe---cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCC
Q 013184 192 TQVSTLAV---RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMER 268 (448)
Q Consensus 192 ~~i~~l~~---~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~ 268 (448)
..|++|+| ...++++|+.||+||+|++...+... .+....+.+++.+++| +.+|. .+++|+.|+.+++||+.+
T Consensus 28 DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~-~ka~~~~~~PvL~v~W--sddgs-kVf~g~~Dk~~k~wDL~S 103 (347)
T KOG0647|consen 28 DSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLV-PKAQQSHDGPVLDVCW--SDDGS-KVFSGGCDKQAKLWDLAS 103 (347)
T ss_pred cchheeEeccccCceEEecccCCceEEEEEecCCccc-chhhhccCCCeEEEEE--ccCCc-eEEeeccCCceEEEEccC
Confidence 36888888 56788899999999999998865332 3555677788777776 77775 899999999999999999
Q ss_pred ceEEEEeecCCCeeEEEECCCCC--EEEEEecCCcEEEEECCCCceeEeeec----------------------------
Q 013184 269 FQLSKHFSFPWPVNHTSLSPDGK--LLVIVGDNPEGILVDSQTGKAIMPLCG---------------------------- 318 (448)
Q Consensus 269 ~~~~~~~~~~~~v~~~~~sp~~~--~l~~~~~d~~i~i~d~~~~~~~~~l~~---------------------------- 318 (448)
++..+.-.|.++|.++.|-+... .|++|+.|.+|+.||++...++.++.-
T Consensus 104 ~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL 183 (347)
T KOG0647|consen 104 GQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNL 183 (347)
T ss_pred CCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEc
Confidence 98888777999999999987554 899999999999999987654433320
Q ss_pred ---------C----CCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCC-cceEEEccCCC---------CeEEEEEcCCC
Q 013184 319 ---------H----LDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLS-KSVAVLKGNLG---------AIRSIRFTSDG 375 (448)
Q Consensus 319 ---------h----~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~---------~v~~l~~sp~g 375 (448)
+ .-.+.|++..++....|.|+-.|.+-|-.+.... +.-..++.|.. +|++++|+|..
T Consensus 184 ~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~h 263 (347)
T KOG0647|consen 184 ENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVH 263 (347)
T ss_pred CCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeeccc
Confidence 1 1235678878877778889999988888886521 33345666652 58899999999
Q ss_pred CEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEE-EecC
Q 013184 376 NFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIG-VWDR 427 (448)
Q Consensus 376 ~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~-~~D~ 427 (448)
..|++++.||++.+||-.....+.....|..+|++.+|+.+|.+++-+ ++|-
T Consensus 264 gtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~gYDW 316 (347)
T KOG0647|consen 264 GTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALGYDW 316 (347)
T ss_pred ceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEeeccc
Confidence 999999999999999988777777777899999999999999998865 4453
No 90
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.92 E-value=2.4e-23 Score=191.68 Aligned_cols=198 Identities=15% Similarity=0.234 Sum_probs=164.1
Q ss_pred EEEEe---cCCEEEEEeCCCeEEEEEcCCCCc----eeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecC
Q 013184 195 STLAV---RDNLLIAGGFQGELICKYLDQPGV----SFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDME 267 (448)
Q Consensus 195 ~~l~~---~~~~lvsg~~dg~i~vw~~~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~ 267 (448)
.+|++ ....|++|+.|++|++|++..... .........|..+++-+.| ++....+|.+++.|+.+.|||++
T Consensus 181 ~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~--h~~h~~lF~sv~dd~~L~iwD~R 258 (422)
T KOG0264|consen 181 YGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAW--HPLHEDLFGSVGDDGKLMIWDTR 258 (422)
T ss_pred cccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhc--cccchhhheeecCCCeEEEEEcC
Confidence 44666 667899999999999999986653 3334556778888888877 67667799999999999999999
Q ss_pred C--ceEEEEee-cCCCeeEEEECC-CCCEEEEEecCCcEEEEECCCC-ceeEeeecCCCcEEEEEEcCC-CCEEEEEeCC
Q 013184 268 R--FQLSKHFS-FPWPVNHTSLSP-DGKLLVIVGDNPEGILVDSQTG-KAIMPLCGHLDFSFASAWHPD-GRIFATGNQD 341 (448)
Q Consensus 268 ~--~~~~~~~~-~~~~v~~~~~sp-~~~~l~~~~~d~~i~i~d~~~~-~~~~~l~~h~~~v~~~~~~p~-g~~l~s~~~d 341 (448)
+ .++..... |.++|+|++|+| ++.+||+|+.|++|.+||+++- ++++++.+|.+.|+.|.|+|+ ...||+++.|
T Consensus 259 ~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D 338 (422)
T KOG0264|consen 259 SNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTD 338 (422)
T ss_pred CCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccC
Confidence 4 44545454 899999999999 7788999999999999999874 468899999999999999995 4589999999
Q ss_pred CcEEEEEccCCCc-------------ceEEEccCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCC
Q 013184 342 KTCRVWDVRNLSK-------------SVAVLKGNLGAIRSIRFTSDGN-FMAMAEPADFVHVYDAKN 394 (448)
Q Consensus 342 ~~i~iwd~~~~~~-------------~~~~~~~~~~~v~~l~~sp~g~-~l~s~~~d~~v~vwd~~~ 394 (448)
+.+.+||+...+. ++..-.||.+.|..+.|+|+.. .|++++.|+.++||.+..
T Consensus 339 ~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 339 RRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred CcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 9999999965332 3456678999999999999875 566778899999999864
No 91
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.92 E-value=3.8e-24 Score=182.64 Aligned_cols=220 Identities=20% Similarity=0.313 Sum_probs=176.0
Q ss_pred cCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeEEE
Q 013184 151 SHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQGELICKYLDQPGVSFCSR 228 (448)
Q Consensus 151 ~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~ 228 (448)
.+.+-++||..++. ++..+. |. .-|.+++| +.++|++|+.+.-++|++++.+.-.. ..
T Consensus 79 adftakvw~a~tgd--elhsf~-hk----------------hivk~~af~~ds~~lltgg~ekllrvfdln~p~App-~E 138 (334)
T KOG0278|consen 79 ADFTAKVWDAVTGD--ELHSFE-HK----------------HIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPP-KE 138 (334)
T ss_pred ccchhhhhhhhhhh--hhhhhh-hh----------------heeeeEEecccchhhhccchHHHhhhhhccCCCCCc-hh
Confidence 46778899987753 333332 11 13678888 88999999999999999999877431 33
Q ss_pred eecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEeecCCCeeEEEECCCCCEEEEEecCCcEEEEECC
Q 013184 229 TTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFSFPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQ 308 (448)
Q Consensus 229 ~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~ 308 (448)
+..+..++. .+.| .... +.|++++.|++||+||..+++.++.+..+.+|+++.++++|++|.++. .+.|.+||..
T Consensus 139 ~~ghtg~Ir-~v~w--c~eD-~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~-gssV~Fwdak 213 (334)
T KOG0278|consen 139 ISGHTGGIR-TVLW--CHED-KCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAY-GSSVKFWDAK 213 (334)
T ss_pred hcCCCCcce-eEEE--eccC-ceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEec-CceeEEeccc
Confidence 444444444 4444 2333 368888999999999999999999999999999999999998776554 4589999999
Q ss_pred CCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEE-EccCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 013184 309 TGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAV-LKGNLGAIRSIRFTSDGNFMAMAEPADFV 387 (448)
Q Consensus 309 ~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~s~~~d~~v 387 (448)
+-..+...+ -...|.+...+|+...+++|+.|..++.||..+ +..+.. .++|.++|.|++|+|+|...|+|+.||+|
T Consensus 214 sf~~lKs~k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~T-geEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTi 291 (334)
T KOG0278|consen 214 SFGLLKSYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNT-GEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTI 291 (334)
T ss_pred cccceeecc-CccccccccccCCCceEEecCcceEEEEEeccC-CceeeecccCCCCceEEEEECCCCceeeccCCCceE
Confidence 988887766 345688889999999999999999999999987 555555 48999999999999999999999999999
Q ss_pred EEEECCCCce
Q 013184 388 HVYDAKNGFE 397 (448)
Q Consensus 388 ~vwd~~~~~~ 397 (448)
+||.+..++.
T Consensus 292 rlWQt~~~~~ 301 (334)
T KOG0278|consen 292 RLWQTTPGKT 301 (334)
T ss_pred EEEEecCCCc
Confidence 9999876543
No 92
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.92 E-value=1.6e-22 Score=181.40 Aligned_cols=243 Identities=14% Similarity=0.145 Sum_probs=191.8
Q ss_pred eEEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceE
Q 013184 194 VSTLAV--RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQL 271 (448)
Q Consensus 194 i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~ 271 (448)
|.+++. +.+++++||.|..-.+|++.++... ..++ .|+..+.++.| +.+|. +|++|..+|.|+||...++..
T Consensus 67 vFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~--~elt-gHKDSVt~~~F--shdgt-lLATGdmsG~v~v~~~stg~~ 140 (399)
T KOG0296|consen 67 VFAVSLHPNNNLVATGGGDDLAFLWDISTGEFA--GELT-GHKDSVTCCSF--SHDGT-LLATGDMSGKVLVFKVSTGGE 140 (399)
T ss_pred eEEEEeCCCCceEEecCCCceEEEEEccCCcce--eEec-CCCCceEEEEE--ccCce-EEEecCCCccEEEEEcccCce
Confidence 566655 7789999999999999999988733 3344 44555556655 77776 999999999999999999988
Q ss_pred EEEee-cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 013184 272 SKHFS-FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVR 350 (448)
Q Consensus 272 ~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~ 350 (448)
...+. .-..|.=+.|+|.+..|++|+.||.+.+|.+.++...+.+.||..++++=.|.|+|+.++++..||+|++|+..
T Consensus 141 ~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~k 220 (399)
T KOG0296|consen 141 QWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPK 220 (399)
T ss_pred EEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecC
Confidence 88776 55678889999999999999999999999999988889999999999999999999999999999999999997
Q ss_pred CCCcceEEEccC---------------------------------------------------CCCeEEEE---EcCCCC
Q 013184 351 NLSKSVAVLKGN---------------------------------------------------LGAIRSIR---FTSDGN 376 (448)
Q Consensus 351 ~~~~~~~~~~~~---------------------------------------------------~~~v~~l~---~sp~g~ 376 (448)
+ ++++..+... ...+.|+. |+..=.
T Consensus 221 t-g~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lp 299 (399)
T KOG0296|consen 221 T-GQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLP 299 (399)
T ss_pred C-CceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccc
Confidence 6 5554444310 00112222 233335
Q ss_pred EEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEecCC-------cceEEEEecccceEecc
Q 013184 377 FMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDRT-------YGSLLQYNRCRNYTYLD 445 (448)
Q Consensus 377 ~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~-------~~~ll~~~~~~~~~~l~ 445 (448)
+.|+|+-||+|.|||+...... ..-.|...|..+.|-+ ..+|++++.||+ .|.++..-++|.+..++
T Consensus 300 L~A~G~vdG~i~iyD~a~~~~R-~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~ 373 (399)
T KOG0296|consen 300 LAACGSVDGTIAIYDLAASTLR-HICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILD 373 (399)
T ss_pred hhhcccccceEEEEecccchhh-eeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeE
Confidence 6789999999999999876544 4556888899999999 788888866654 56777777888776554
No 93
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=4.3e-22 Score=167.77 Aligned_cols=233 Identities=19% Similarity=0.301 Sum_probs=187.4
Q ss_pred eeEEEEe--cCCEEEEEeCCCeEEEEEcCC------C----C--ceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCC
Q 013184 193 QVSTLAV--RDNLLIAGGFQGELICKYLDQ------P----G--VSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNND 258 (448)
Q Consensus 193 ~i~~l~~--~~~~lvsg~~dg~i~vw~~~~------~----~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d 258 (448)
.|.+++| .|.+.++|+...++++--... . . .....+-..+|.+.+.+++| +|.|. ++++|++|
T Consensus 34 airav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~w--s~~ge-liatgsnd 110 (350)
T KOG0641|consen 34 AIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAW--SPCGE-LIATGSND 110 (350)
T ss_pred heeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEe--cCccC-eEEecCCC
Confidence 4777777 889999999999998864321 0 0 12223344577777788877 99987 99999999
Q ss_pred CcEEEEecCCc--eEE---EEee-cCCCeeEEEECC----CCCEEEEEe-cCCcEEEEECCCCceeEeeecCCCcEEEEE
Q 013184 259 CGVRDFDMERF--QLS---KHFS-FPWPVNHTSLSP----DGKLLVIVG-DNPEGILVDSQTGKAIMPLCGHLDFSFASA 327 (448)
Q Consensus 259 g~v~iwd~~~~--~~~---~~~~-~~~~v~~~~~sp----~~~~l~~~~-~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~ 327 (448)
.+|++.-.... +.. ..+. |.+.|..++|-. .+.+|++++ .|..|++-|..+|+..+.+.+|.+.|.++
T Consensus 111 k~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal- 189 (350)
T KOG0641|consen 111 KTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL- 189 (350)
T ss_pred ceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEE-
Confidence 99999865432 211 2233 899999999954 345666654 56778888999999999999999999887
Q ss_pred EcCCCCEEEEEeCCCcEEEEEccCCCcceEEEcc--C-----CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeee
Q 013184 328 WHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKG--N-----LGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQ 400 (448)
Q Consensus 328 ~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~-----~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~ 400 (448)
++-+|..+++|++|.+||+||+|- ..++.++.. | .+.|.+++..|.|++|++|-.|....+||++.+..+..
T Consensus 190 yswn~~m~~sgsqdktirfwdlrv-~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~ 268 (350)
T KOG0641|consen 190 YSWNGAMFASGSQDKTIRFWDLRV-NSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQR 268 (350)
T ss_pred EEecCcEEEccCCCceEEEEeeec-cceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeee
Confidence 233689999999999999999987 677766542 2 25799999999999999999999999999999999999
Q ss_pred eecCcCceEEEEEccCCCeEEEEEecCCcc
Q 013184 401 EIDFFGEISGMTFSPDTEALFIGVWDRTYG 430 (448)
Q Consensus 401 ~~~~~~~v~~~~fspdg~~L~~~~~D~~~~ 430 (448)
+..|...|.++.|||...||+++++|.+++
T Consensus 269 f~phsadir~vrfsp~a~yllt~syd~~ik 298 (350)
T KOG0641|consen 269 FHPHSADIRCVRFSPGAHYLLTCSYDMKIK 298 (350)
T ss_pred eCCCccceeEEEeCCCceEEEEecccceEE
Confidence 999999999999999999999999998764
No 94
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.92 E-value=5.3e-23 Score=204.59 Aligned_cols=227 Identities=19% Similarity=0.191 Sum_probs=198.9
Q ss_pred ceeeEEEEecCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCce
Q 013184 191 QTQVSTLAVRDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQ 270 (448)
Q Consensus 191 ~~~i~~l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~ 270 (448)
...+.++.+.++++++|+.+++|.+|+....... .....+|.+.+.++.+ +.+..++++|+.|.++++||+.+++
T Consensus 208 ~~~~~~~q~~~~~~~~~s~~~tl~~~~~~~~~~i--~~~l~GH~g~V~~l~~---~~~~~~lvsgS~D~t~rvWd~~sg~ 282 (537)
T KOG0274|consen 208 DHVVLCLQLHDGFFKSGSDDSTLHLWDLNNGYLI--LTRLVGHFGGVWGLAF---PSGGDKLVSGSTDKTERVWDCSTGE 282 (537)
T ss_pred cchhhhheeecCeEEecCCCceeEEeecccceEE--EeeccCCCCCceeEEE---ecCCCEEEEEecCCcEEeEecCCCc
Confidence 4467777888999999999999999998765432 3325567777888887 4456699999999999999999999
Q ss_pred EEEEee-cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 013184 271 LSKHFS-FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDV 349 (448)
Q Consensus 271 ~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~ 349 (448)
+...+. |...|.++... +..+++|+.|.+|++|++.+++.++.+.+|.++|.++..+ +.++++|+.|++|++||+
T Consensus 283 C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~ 358 (537)
T KOG0274|consen 283 CTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDP 358 (537)
T ss_pred EEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEh
Confidence 999999 99999998876 4577888999999999999999999999999999999997 889999999999999999
Q ss_pred cCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC-ceeeeeecCcCceEEEEEccCCCeEEEEEecCC
Q 013184 350 RNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNG-FEKEQEIDFFGEISGMTFSPDTEALFIGVWDRT 428 (448)
Q Consensus 350 ~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~-~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~ 428 (448)
+. .++++.+.+|...|.++.+.+. ..+++|+.|+.|++||+.+. +++..+..|.+-+.++.+ .+++|++++.|++
T Consensus 359 ~~-~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~ 434 (537)
T KOG0274|consen 359 RT-GKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGT 434 (537)
T ss_pred hh-ceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEecccccc
Confidence 86 9999999999999999988765 89999999999999999999 888889999988877665 5789999999985
Q ss_pred cc
Q 013184 429 YG 430 (448)
Q Consensus 429 ~~ 430 (448)
++
T Consensus 435 Ik 436 (537)
T KOG0274|consen 435 IK 436 (537)
T ss_pred EE
Confidence 43
No 95
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=6.4e-23 Score=180.81 Aligned_cols=176 Identities=18% Similarity=0.247 Sum_probs=142.2
Q ss_pred CCCeeEEEEeCCCcEEEEecCCceEEEEee-cCCCeeEEEECCCCCEEEEEecCCcEEEEECC---CC-----ceeEeee
Q 013184 247 SGGIHFMASNNDCGVRDFDMERFQLSKHFS-FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQ---TG-----KAIMPLC 317 (448)
Q Consensus 247 ~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~---~~-----~~~~~l~ 317 (448)
++..+|++++.|..|.+|++. |+.+.++. ....-...+.||+|+++++++-...|++|.+- .| +.+..|+
T Consensus 197 ~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~Lk 275 (420)
T KOG2096|consen 197 GNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLK 275 (420)
T ss_pred CCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheec
Confidence 455689999999999999998 88888887 55566788999999999999999999999863 22 2356789
Q ss_pred cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCC------CcceEEE----ccCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 013184 318 GHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNL------SKSVAVL----KGNLGAIRSIRFTSDGNFMAMAEPADFV 387 (448)
Q Consensus 318 ~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~------~~~~~~~----~~~~~~v~~l~~sp~g~~l~s~~~d~~v 387 (448)
||...|.+++|+|+...++|.+.||++||||+.-. .+.+.+. ....+....|.++|.|+.||.+.. ..+
T Consensus 276 GH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g-s~l 354 (420)
T KOG2096|consen 276 GHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG-SDL 354 (420)
T ss_pred cchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC-Cce
Confidence 99999999999999999999999999999997521 1222222 222233447999999999988654 469
Q ss_pred EEEECCCCceeeeee-cCcCceEEEEEccCCCeEEEEE
Q 013184 388 HVYDAKNGFEKEQEI-DFFGEISGMTFSPDTEALFIGV 424 (448)
Q Consensus 388 ~vwd~~~~~~~~~~~-~~~~~v~~~~fspdg~~L~~~~ 424 (448)
++|..++|+....+. .|.+.|++|+|+|+|+++++++
T Consensus 355 ~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG 392 (420)
T KOG2096|consen 355 KVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG 392 (420)
T ss_pred EEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec
Confidence 999999987665544 4888999999999999999987
No 96
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.4e-22 Score=194.82 Aligned_cols=257 Identities=17% Similarity=0.231 Sum_probs=205.3
Q ss_pred cCcceeeecccCCCC--CcccccccceeeeCCCCeEEEe-cCCeEEEEecCCCceeEEEecCC-CCCCCCCCCCCcccCC
Q 013184 114 GKYYEFWRNTRSVKS--TILHFQLRNLVWSTSKHDVYLM-SHFSIVHWSSLSSKRTEVLDVSG-HVAPCEKHPGNLLEGF 189 (448)
Q Consensus 114 ~~~~~f~~~~~~~~~--~~~hfq~r~l~~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~g-h~~p~~~~~~~~~~~~ 189 (448)
...|-+......+.. .+...+...+.|+..+..+.++ .++.|.+||..+.+... .+.+ |..
T Consensus 197 ~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~--~~~~~h~~------------- 261 (484)
T KOG0305|consen 197 QSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTR--TLRGSHAS------------- 261 (484)
T ss_pred ceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccc--cccCCcCc-------------
Confidence 344555555444332 1113455566788888888886 57789999986544333 3343 332
Q ss_pred cceeeEEEEecCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCc
Q 013184 190 TQTQVSTLAVRDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERF 269 (448)
Q Consensus 190 ~~~~i~~l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~ 269 (448)
.|.++++++..+.+|+.+|.|..+++........ ...+|...+..+.| ++++. ++++|++|+.+.|||....
T Consensus 262 ---rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~--~~~~H~qeVCgLkw--s~d~~-~lASGgnDN~~~Iwd~~~~ 333 (484)
T KOG0305|consen 262 ---RVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVS--TLQGHRQEVCGLKW--SPDGN-QLASGGNDNVVFIWDGLSP 333 (484)
T ss_pred ---eeEEEeccCceEEEecCCCcEEEEEEecchhhhh--hhhcccceeeeeEE--CCCCC-eeccCCCccceEeccCCCc
Confidence 6999999999999999999999999988775433 35567777777777 88876 9999999999999999766
Q ss_pred eEEEEee-cCCCeeEEEECC-CCCEEEEEe--cCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEE--eCCCc
Q 013184 270 QLSKHFS-FPWPVNHTSLSP-DGKLLVIVG--DNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATG--NQDKT 343 (448)
Q Consensus 270 ~~~~~~~-~~~~v~~~~~sp-~~~~l~~~~--~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~--~~d~~ 343 (448)
++...+. |...|..++|+| ...+||+|+ .|+.|++||..+|+.+..+. -...|.++.|++..+-|+++ ..+..
T Consensus 334 ~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~ 412 (484)
T KOG0305|consen 334 EPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQ 412 (484)
T ss_pred cccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCc
Confidence 6666665 999999999999 788999876 68999999999999998876 46789999999988766665 34668
Q ss_pred EEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 013184 344 CRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNG 395 (448)
Q Consensus 344 i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~ 395 (448)
|.||+..+ .+.+..+.+|...|..+++||||..+++|+.|.++++|++-..
T Consensus 413 i~lw~~ps-~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 413 ITLWKYPS-MKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred EEEEeccc-cceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 99999977 7888999999999999999999999999999999999998764
No 97
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=7.5e-22 Score=195.62 Aligned_cols=266 Identities=19% Similarity=0.279 Sum_probs=206.5
Q ss_pred cceeeeCCCCeEEEe-cCCeEEEEecCCC-ceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEecCCEEEEEeCCCeE
Q 013184 136 RNLVWSTSKHDVYLM-SHFSIVHWSSLSS-KRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAVRDNLLIAGGFQGEL 213 (448)
Q Consensus 136 r~l~~~~~~~~v~~~-~~~~v~~w~~~~~-~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~~~~~lvsg~~dg~i 213 (448)
..+.+.+++.-|+++ +++.|++|+.... ...+.+.. .+..|.+++...++|++|+.+++|
T Consensus 17 t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~------------------~g~~v~~ia~~s~~f~~~s~~~tv 78 (933)
T KOG1274|consen 17 TLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDI------------------SGELVSSIACYSNHFLTGSEQNTV 78 (933)
T ss_pred EEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhc------------------cCceeEEEeecccceEEeeccceE
Confidence 445677788877777 5778999997654 22233321 224589999999999999999999
Q ss_pred EEEEcCCCCce-eEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee-cCCCeeEEEECCCCC
Q 013184 214 ICKYLDQPGVS-FCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS-FPWPVNHTSLSPDGK 291 (448)
Q Consensus 214 ~vw~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~ 291 (448)
.+|.+...... ...+++. ..+.+++ +-+|. .++.|+.|-.|++.++.......++. |.++|.++.|+|+++
T Consensus 79 ~~y~fps~~~~~iL~Rftl----p~r~~~v--~g~g~-~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~ 151 (933)
T KOG1274|consen 79 LRYKFPSGEEDTILARFTL----PIRDLAV--SGSGK-MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGN 151 (933)
T ss_pred EEeeCCCCCccceeeeeec----cceEEEE--ecCCc-EEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCC
Confidence 99999876632 2233322 2345555 66665 89999999999999998887777777 999999999999999
Q ss_pred EEEEEecCCcEEEEECCCCceeEeeecC--------CCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEcc--
Q 013184 292 LLVIVGDNPEGILVDSQTGKAIMPLCGH--------LDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKG-- 361 (448)
Q Consensus 292 ~l~~~~~d~~i~i~d~~~~~~~~~l~~h--------~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-- 361 (448)
+||+.+.||.|++||+.++.+..++.+- ...+..++|+|+|..++....|+.|++|+... ......+..
T Consensus 152 fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~-we~~f~Lr~~~ 230 (933)
T KOG1274|consen 152 FLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKG-WELQFKLRDKL 230 (933)
T ss_pred EEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCC-ceeheeecccc
Confidence 9999999999999999999887766541 34466789999999999999999999999976 444444432
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEecCCcce
Q 013184 362 NLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDRTYGS 431 (448)
Q Consensus 362 ~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~~~~ 431 (448)
+...+.+++|+|+|+|||+++.+|.|.|||..+-.. ......|.+++|.|++..|-.-.+-++.+.
T Consensus 231 ~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~ 296 (933)
T KOG1274|consen 231 SSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLITALGTLGV 296 (933)
T ss_pred cccceEEEEEcCCCcEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEEEeecccccc
Confidence 344599999999999999999999999999988222 233467999999999988776666555443
No 98
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=4.4e-21 Score=161.66 Aligned_cols=237 Identities=15% Similarity=0.212 Sum_probs=191.2
Q ss_pred ceeeEEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeE--EEeecCCCCceeeEEEEeCCC-CCeeEEEEe-CCCcEEEE
Q 013184 191 QTQVSTLAV--RDNLLIAGGFQGELICKYLDQPGVSFC--SRTTYDENAITNAVEIYNSPS-GGIHFMASN-NDCGVRDF 264 (448)
Q Consensus 191 ~~~i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~s-~dg~v~iw 264 (448)
...|.|.++ .|.++++|+.|..|++..++....... -.-..-|.+.+..++|...|. ++.+|++++ .|..|++-
T Consensus 89 kgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~t 168 (350)
T KOG0641|consen 89 KGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYIT 168 (350)
T ss_pred CccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEe
Confidence 446888887 899999999999999987765442211 111234567778888877664 344666654 47788888
Q ss_pred ecCCceEEEEee-cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeec--C-----CCcEEEEEEcCCCCEEE
Q 013184 265 DMERFQLSKHFS-FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCG--H-----LDFSFASAWHPDGRIFA 336 (448)
Q Consensus 265 d~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~--h-----~~~v~~~~~~p~g~~l~ 336 (448)
|..+++....+. |.+.|.++ ++-++-.+++|+.|.+|++||++-..++.++.. | ...|.+++..|.|++|+
T Consensus 169 dc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~ 247 (350)
T KOG0641|consen 169 DCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLA 247 (350)
T ss_pred ecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceee
Confidence 999999888777 88888775 233588999999999999999999888887753 2 35689999999999999
Q ss_pred EEeCCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc----eeeeeecCcCceEEEE
Q 013184 337 TGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGF----EKEQEIDFFGEISGMT 412 (448)
Q Consensus 337 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~----~~~~~~~~~~~v~~~~ 412 (448)
+|-.|.++.+||+|. ++.++.+..|...|+|+.|||...||++++.|..|++-|++..- .+.....|...+..+.
T Consensus 248 sg~~dssc~lydirg-~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~r 326 (350)
T KOG0641|consen 248 SGHADSSCMLYDIRG-GRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCR 326 (350)
T ss_pred eccCCCceEEEEeeC-CceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEE
Confidence 999999999999986 89999999999999999999999999999999999999987431 2233446888999999
Q ss_pred EccCCCeEEEEEecCCc
Q 013184 413 FSPDTEALFIGVWDRTY 429 (448)
Q Consensus 413 fspdg~~L~~~~~D~~~ 429 (448)
|+|..-.+++.+.|.+.
T Consensus 327 wh~~d~sfisssadkt~ 343 (350)
T KOG0641|consen 327 WHPQDFSFISSSADKTA 343 (350)
T ss_pred ecCccceeeeccCcceE
Confidence 99998888899988764
No 99
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.91 E-value=2.9e-22 Score=192.88 Aligned_cols=258 Identities=16% Similarity=0.194 Sum_probs=202.1
Q ss_pred eeCCCCeEEEec-CCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEE-EEe---cCCEEEEEeCCCeEE
Q 013184 140 WSTSKHDVYLMS-HFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVST-LAV---RDNLLIAGGFQGELI 214 (448)
Q Consensus 140 ~~~~~~~v~~~~-~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~-l~~---~~~~lvsg~~dg~i~ 214 (448)
..++...+.-++ ++++++|........+...+.+|..- |.+ +++ ++..|++|+.|+.|.
T Consensus 21 ~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~----------------i~~~i~y~e~~~~~l~~g~~D~~i~ 84 (745)
T KOG0301|consen 21 AVTDGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGF----------------IANSICYAESDKGRLVVGGMDTTII 84 (745)
T ss_pred EecCCeEEeecCCCCceeeeeccCcccccceecccCcce----------------eeccceeccccCcceEeecccceEE
Confidence 344444455555 78899999755554454445444321 111 333 667899999999999
Q ss_pred EEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee-cCCCeeEEEECCCCCEE
Q 013184 215 CKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS-FPWPVNHTSLSPDGKLL 293 (448)
Q Consensus 215 vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l 293 (448)
+|.+...... .+...|...++++.+ ..++ .+++||.|.++++|-.. ++...+. |+.+|++++.-|.+ .+
T Consensus 85 v~~~~~~~P~---~~LkgH~snVC~ls~--~~~~--~~iSgSWD~TakvW~~~--~l~~~l~gH~asVWAv~~l~e~-~~ 154 (745)
T KOG0301|consen 85 VFKLSQAEPL---YTLKGHKSNVCSLSI--GEDG--TLISGSWDSTAKVWRIG--ELVYSLQGHTASVWAVASLPEN-TY 154 (745)
T ss_pred EEecCCCCch---hhhhccccceeeeec--CCcC--ceEecccccceEEecch--hhhcccCCcchheeeeeecCCC-cE
Confidence 9999877653 344566677777765 3333 48999999999999864 4444565 99999999999987 88
Q ss_pred EEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEEEEcC
Q 013184 294 VIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTS 373 (448)
Q Consensus 294 ~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp 373 (448)
++|+.|..|++|.- ++.+++|.+|.+.|..+++-|++ .|++++.||.|++|++. +.++.+..+|..-|.++...+
T Consensus 155 vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~--ge~l~~~~ghtn~vYsis~~~ 229 (745)
T KOG0301|consen 155 VTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLD--GEVLLEMHGHTNFVYSISMAL 229 (745)
T ss_pred EeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEecc--CceeeeeeccceEEEEEEecC
Confidence 99999999999964 78899999999999999999764 58899999999999994 899999999999999999888
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeeeeecCcC-ceEEEEEccCCCeEEEEEecCCcceE
Q 013184 374 DGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFG-EISGMTFSPDTEALFIGVWDRTYGSL 432 (448)
Q Consensus 374 ~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~-~v~~~~fspdg~~L~~~~~D~~~~~l 432 (448)
++..+++++.|++++||+.. ...+.+.|.+ .|+++.+-++|. +++|++||.++..
T Consensus 230 ~~~~Ivs~gEDrtlriW~~~---e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVf 285 (745)
T KOG0301|consen 230 SDGLIVSTGEDRTLRIWKKD---ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVF 285 (745)
T ss_pred CCCeEEEecCCceEEEeecC---ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEE
Confidence 88999999999999999965 3445555655 899999999887 7788889765543
No 100
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.90 E-value=2.7e-22 Score=202.47 Aligned_cols=234 Identities=19% Similarity=0.293 Sum_probs=191.6
Q ss_pred eeEEEEe--cCCEEEEEe--CCCeEEEEEcCCCC---------ceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCC
Q 013184 193 QVSTLAV--RDNLLIAGG--FQGELICKYLDQPG---------VSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDC 259 (448)
Q Consensus 193 ~i~~l~~--~~~~lvsg~--~dg~i~vw~~~~~~---------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg 259 (448)
+|.++++ ++..+++|| .||.+++|+.+.-. +.........|.+.++|+.| +|+|. +|++|+.|+
T Consensus 15 ~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~--S~dG~-~lAsGSDD~ 91 (942)
T KOG0973|consen 15 SIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRF--SPDGS-YLASGSDDR 91 (942)
T ss_pred eEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEE--CCCCC-eEeeccCcc
Confidence 5778877 899999999 99999999875311 11222334567777888877 89987 999999999
Q ss_pred cEEEEecCC------------------ceEEEEee-cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCC
Q 013184 260 GVRDFDMER------------------FQLSKHFS-FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHL 320 (448)
Q Consensus 260 ~v~iwd~~~------------------~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~ 320 (448)
.|.||.... .+.+..+. |...|..++|+|++.++++++.|++|.||+.++.+.+..+.+|.
T Consensus 92 ~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~ 171 (942)
T KOG0973|consen 92 LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQ 171 (942)
T ss_pred eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeeccc
Confidence 999998762 12445555 99999999999999999999999999999999999999999999
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCC------CCeEEEEEcCCCCEEEEEeC----CCeEEEE
Q 013184 321 DFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNL------GAIRSIRFTSDGNFMAMAEP----ADFVHVY 390 (448)
Q Consensus 321 ~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~------~~v~~l~~sp~g~~l~s~~~----d~~v~vw 390 (448)
..|..+.|.|-|+|||+-+.|++|+||.+.. -...+.+.++- .-++.+.|||||++|+++.. ...+.|.
T Consensus 172 s~VKGvs~DP~Gky~ASqsdDrtikvwrt~d-w~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~Ii 250 (942)
T KOG0973|consen 172 SLVKGVSWDPIGKYFASQSDDRTLKVWRTSD-WGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAII 250 (942)
T ss_pred ccccceEECCccCeeeeecCCceEEEEEccc-ceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEE
Confidence 9999999999999999999999999999865 44555555433 24788999999999998743 3478999
Q ss_pred ECCCCceeeeeecCcCceEEEEEccC-----CC------------eEEEEEecCCcc
Q 013184 391 DAKNGFEKEQEIDFFGEISGMTFSPD-----TE------------ALFIGVWDRTYG 430 (448)
Q Consensus 391 d~~~~~~~~~~~~~~~~v~~~~fspd-----g~------------~L~~~~~D~~~~ 430 (448)
+-.+.+.-..+.+|.+++..+.|+|. .+ .+|+|+.|+++-
T Consensus 251 eR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlS 307 (942)
T KOG0973|consen 251 ERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLS 307 (942)
T ss_pred ecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEE
Confidence 97777767889999999999999991 11 678889997643
No 101
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=3.7e-24 Score=206.61 Aligned_cols=225 Identities=16% Similarity=0.254 Sum_probs=198.8
Q ss_pred eEEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceE
Q 013184 194 VSTLAV--RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQL 271 (448)
Q Consensus 194 i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~ 271 (448)
|.++.. .++.+++|+.+-.+-+|.+........ ...|..++.++.+ ++... +|++|+.+|+|++||++..+.
T Consensus 31 v~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S---~~~hespIeSl~f--~~~E~-LlaagsasgtiK~wDleeAk~ 104 (825)
T KOG0267|consen 31 VGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITS---LTGHESPIESLTF--DTSER-LLAAGSASGTIKVWDLEEAKI 104 (825)
T ss_pred hceeeeeccceeeccCCCceeeccccccCCchhhe---eeccCCcceeeec--Ccchh-hhcccccCCceeeeehhhhhh
Confidence 444443 678899999999999999887764422 3466777788877 55544 899999999999999999998
Q ss_pred EEEee-cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 013184 272 SKHFS-FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVR 350 (448)
Q Consensus 272 ~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~ 350 (448)
++++. |...+.++.|+|-+.+.+.|+.|+.+.+||.+...+.+.+.+|...|..+.|+|+|+++++|+.|.+++|||+.
T Consensus 105 vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~ 184 (825)
T KOG0267|consen 105 VRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLT 184 (825)
T ss_pred hhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccc
Confidence 88776 88999999999999999999999999999999888999999999999999999999999999999999999997
Q ss_pred CCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEe
Q 013184 351 NLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVW 425 (448)
Q Consensus 351 ~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~ 425 (448)
. ++....+..|.+.+.++.|+|..-.+++|+.|++|++||+++-..+.........|.+.+|+|+|+.+++|-.
T Consensus 185 a-gk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q 258 (825)
T KOG0267|consen 185 A-GKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQ 258 (825)
T ss_pred c-cccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCch
Confidence 6 8899999999999999999999999999999999999999987777776667788999999999999998844
No 102
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1e-22 Score=185.12 Aligned_cols=236 Identities=17% Similarity=0.228 Sum_probs=186.9
Q ss_pred ccceeeeCCCCeEEEec-CCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCCC
Q 013184 135 LRNLVWSTSKHDVYLMS-HFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQG 211 (448)
Q Consensus 135 ~r~l~~~~~~~~v~~~~-~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~dg 211 (448)
...++|+|+.+.+..++ +..+.+||+.++.......-. + +..+++.++ ++..+++|+.|+
T Consensus 272 V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~-~----------------~~S~~sc~W~pDg~~~V~Gs~dr 334 (519)
T KOG0293|consen 272 VSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSG-L----------------GFSVSSCAWCPDGFRFVTGSPDR 334 (519)
T ss_pred eEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccC-c----------------CCCcceeEEccCCceeEecCCCC
Confidence 45578999999888875 556999999886654443211 1 123566666 999999999999
Q ss_pred eEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEeecCCCeeEEEECCCCC
Q 013184 212 ELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFSFPWPVNHTSLSPDGK 291 (448)
Q Consensus 212 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~ 291 (448)
++..|+++..... +.+ ......+..+++ .++|. .+++...|..+++++.++......+....+|++.+.|.+++
T Consensus 335 ~i~~wdlDgn~~~-~W~--gvr~~~v~dlai--t~Dgk-~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k 408 (519)
T KOG0293|consen 335 TIIMWDLDGNILG-NWE--GVRDPKVHDLAI--TYDGK-YVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGK 408 (519)
T ss_pred cEEEecCCcchhh-ccc--ccccceeEEEEE--cCCCc-EEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCc
Confidence 9999999865421 111 111122445555 78887 66666689999999999877776777788999999999999
Q ss_pred EEEEEecCCcEEEEECCCCceeEeeecCCCc--EEEEEEcC-CCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEE
Q 013184 292 LLVIVGDNPEGILVDSQTGKAIMPLCGHLDF--SFASAWHP-DGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRS 368 (448)
Q Consensus 292 ~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~--v~~~~~~p-~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~ 368 (448)
++++--.+..+++||++..+.++.+.||... +..-+|-- +..++|+|+.|+.|+||+..+ ++++.++.||...|++
T Consensus 409 ~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~s-gkll~~LsGHs~~vNc 487 (519)
T KOG0293|consen 409 LALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRIS-GKLLAVLSGHSKTVNC 487 (519)
T ss_pred EEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccC-CceeEeecCCcceeeE
Confidence 9999999999999999988889999998754 44446654 457999999999999999987 8999999999999999
Q ss_pred EEEcCCC-CEEEEEeCCCeEEEEECCC
Q 013184 369 IRFTSDG-NFMAMAEPADFVHVYDAKN 394 (448)
Q Consensus 369 l~~sp~g-~~l~s~~~d~~v~vwd~~~ 394 (448)
++|+|.. .++|+|+.||+|+||-...
T Consensus 488 VswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 488 VSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred EecCCCCHHHhhccCCCCeEEEecCCc
Confidence 9999965 6889999999999998653
No 103
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.90 E-value=9.6e-24 Score=186.29 Aligned_cols=191 Identities=16% Similarity=0.207 Sum_probs=165.0
Q ss_pred ecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee---------cCCCeeEEEECCCCCEEEEEecCC
Q 013184 230 TYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS---------FPWPVNHTSLSPDGKLLVIVGDNP 300 (448)
Q Consensus 230 ~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~---------~~~~v~~~~~sp~~~~l~~~~~d~ 300 (448)
..+....+.+..| +|+|. +|++|+.||.|.+|+..+|++.+.++ +..+|.|+.||.|...+|+|+.||
T Consensus 209 KFg~KSh~EcA~F--SPDgq-yLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDG 285 (508)
T KOG0275|consen 209 KFGQKSHVECARF--SPDGQ-YLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDG 285 (508)
T ss_pred ecccccchhheee--CCCCc-eEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCC
Confidence 3344555556655 99987 99999999999999999988765443 568899999999999999999999
Q ss_pred cEEEEECCCCceeEeee-cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEE
Q 013184 301 EGILVDSQTGKAIMPLC-GHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMA 379 (448)
Q Consensus 301 ~i~i~d~~~~~~~~~l~-~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~ 379 (448)
.|++|.+++|.+++.+. +|...|+++.|+.|+..+++++.|.++||--+.. ++++..+.+|.+-|+.+.|+++|.+++
T Consensus 286 kIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKS-GK~LKEfrGHsSyvn~a~ft~dG~~ii 364 (508)
T KOG0275|consen 286 KIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKS-GKCLKEFRGHSSYVNEATFTDDGHHII 364 (508)
T ss_pred cEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEecccc-chhHHHhcCccccccceEEcCCCCeEE
Confidence 99999999999999987 8999999999999999999999999999999977 899999999999999999999999999
Q ss_pred EEeCCCeEEEEECCCCceeeeeec--CcCceEEEEEccC-CCeEEEEE
Q 013184 380 MAEPADFVHVYDAKNGFEKEQEID--FFGEISGMTFSPD-TEALFIGV 424 (448)
Q Consensus 380 s~~~d~~v~vwd~~~~~~~~~~~~--~~~~v~~~~fspd-g~~L~~~~ 424 (448)
+++.||+|+||+.+++.++.++.. ..-+|.++..-|- .+.++++.
T Consensus 365 saSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCN 412 (508)
T KOG0275|consen 365 SASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCN 412 (508)
T ss_pred EecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEc
Confidence 999999999999999988876654 3346777776663 34555543
No 104
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=5.3e-22 Score=169.11 Aligned_cols=229 Identities=18% Similarity=0.233 Sum_probs=180.3
Q ss_pred eEEE-ecCCeEEEEecCCCce-eEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe----cCCEEEEEeCCCeEEEEEcC
Q 013184 146 DVYL-MSHFSIVHWSSLSSKR-TEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV----RDNLLIAGGFQGELICKYLD 219 (448)
Q Consensus 146 ~v~~-~~~~~v~~w~~~~~~~-~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~----~~~~lvsg~~dg~i~vw~~~ 219 (448)
.+.+ ++|++|+++....... ..+..+.||..| |+-+++ -|.+|++++.||.|+||.-.
T Consensus 25 rlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GP----------------Vwqv~wahPk~G~iLAScsYDgkVIiWke~ 88 (299)
T KOG1332|consen 25 RLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGP----------------VWKVAWAHPKFGTILASCSYDGKVIIWKEE 88 (299)
T ss_pred eeeeecCCccEEEEEEcCCCCceeeeEecCCCCC----------------eeEEeecccccCcEeeEeecCceEEEEecC
Confidence 3444 4788899999876554 667789999987 666666 68999999999999999977
Q ss_pred CCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCc-e-EEEE--eecCCCeeEEEECCC---C--
Q 013184 220 QPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERF-Q-LSKH--FSFPWPVNHTSLSPD---G-- 290 (448)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~-~-~~~~--~~~~~~v~~~~~sp~---~-- 290 (448)
.+.... ......|.+.++++++..+..| ..|++++.||.|.|.+.... . .... +.|.-.|++++|.|. |
T Consensus 89 ~g~w~k-~~e~~~h~~SVNsV~wapheyg-l~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~ 166 (299)
T KOG1332|consen 89 NGRWTK-AYEHAAHSASVNSVAWAPHEYG-LLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSL 166 (299)
T ss_pred CCchhh-hhhhhhhcccceeecccccccc-eEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccc
Confidence 765322 2233467788899999766555 48999999999999987653 2 2222 238889999999985 4
Q ss_pred ---------CEEEEEecCCcEEEEECCCCc--eeEeeecCCCcEEEEEEcCCC----CEEEEEeCCCcEEEEEccCCCc-
Q 013184 291 ---------KLLVIVGDNPEGILVDSQTGK--AIMPLCGHLDFSFASAWHPDG----RIFATGNQDKTCRVWDVRNLSK- 354 (448)
Q Consensus 291 ---------~~l~~~~~d~~i~i~d~~~~~--~~~~l~~h~~~v~~~~~~p~g----~~l~s~~~d~~i~iwd~~~~~~- 354 (448)
+.|++|+.|..|+||....++ .-++|.+|.+.|..++|.|.- .+||++++||+|.||-.+....
T Consensus 167 ~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~ 246 (299)
T KOG1332|consen 167 VDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEP 246 (299)
T ss_pred cccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCc
Confidence 679999999999999988764 345689999999999999954 4899999999999998864222
Q ss_pred -ceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 013184 355 -SVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDA 392 (448)
Q Consensus 355 -~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~ 392 (448)
....++.....+..+.||+.|..|++++.|+.|.+|--
T Consensus 247 wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke 285 (299)
T KOG1332|consen 247 WKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKE 285 (299)
T ss_pred ccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEe
Confidence 22334455678999999999999999999999999973
No 105
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.4e-22 Score=197.26 Aligned_cols=227 Identities=13% Similarity=0.204 Sum_probs=176.7
Q ss_pred EEEEe--cCCEEEEEeCCCeEEEEEcCCCC--ceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCC--
Q 013184 195 STLAV--RDNLLIAGGFQGELICKYLDQPG--VSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMER-- 268 (448)
Q Consensus 195 ~~l~~--~~~~lvsg~~dg~i~vw~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~-- 268 (448)
.+++. +-+.++.+|.. .+.++.+.... ...+.......+....+-.+.+.....++|++++..|.|.+||+..
T Consensus 43 nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~ 121 (839)
T KOG0269|consen 43 NAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKSI 121 (839)
T ss_pred ceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCccc
Confidence 34444 33445555433 45566555443 2222332233333334444444555566999999999999999987
Q ss_pred -ceEEEEee-cCCCeeEEEECC-CCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcC-CCCEEEEEeCCCcE
Q 013184 269 -FQLSKHFS-FPWPVNHTSLSP-DGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHP-DGRIFATGNQDKTC 344 (448)
Q Consensus 269 -~~~~~~~~-~~~~v~~~~~sp-~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p-~g~~l~s~~~d~~i 344 (448)
.+.+..|. |...++++.|++ ...+|++|+.||.|++||++..+...++.+....|..|.|+| .+.+|+++...|.+
T Consensus 122 rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~l 201 (839)
T KOG0269|consen 122 RNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYL 201 (839)
T ss_pred cchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceE
Confidence 45555666 999999999998 678999999999999999999999999999999999999999 67899999999999
Q ss_pred EEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeee-eecCcCceEEEEEccCCCeEEE
Q 013184 345 RVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQ-EIDFFGEISGMTFSPDTEALFI 422 (448)
Q Consensus 345 ~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~-~~~~~~~v~~~~fspdg~~L~~ 422 (448)
++||+|.+.++...+.+|.++|.|+.|+|++.+||+|+.|+.|+|||+.+++.... .+....+|..+.|-|..++.+.
T Consensus 202 qlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLA 280 (839)
T KOG0269|consen 202 QLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLA 280 (839)
T ss_pred EEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhh
Confidence 99999998999999999999999999999999999999999999999986654332 2334578999999998765543
No 106
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.89 E-value=1.1e-19 Score=171.57 Aligned_cols=247 Identities=18% Similarity=0.168 Sum_probs=175.8
Q ss_pred cCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEE-EEEeCCCeEEEEEcCCCCceeEE
Q 013184 151 SHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLL-IAGGFQGELICKYLDQPGVSFCS 227 (448)
Q Consensus 151 ~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~l-vsg~~dg~i~vw~~~~~~~~~~~ 227 (448)
.++.|.+|+..++.....+. ++.. +.++++ +++.+ ++++.++.|++|++.+.... .
T Consensus 9 ~d~~v~~~d~~t~~~~~~~~--~~~~-----------------~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~--~ 67 (300)
T TIGR03866 9 KDNTISVIDTATLEVTRTFP--VGQR-----------------PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVI--G 67 (300)
T ss_pred CCCEEEEEECCCCceEEEEE--CCCC-----------------CCceEECCCCCEEEEEECCCCeEEEEECCCCcEE--E
Confidence 46789999987765444433 2222 233444 67665 67788999999998876532 1
Q ss_pred EeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEeecCCCeeEEEECCCCCEEEEEecCC-cEEEEE
Q 013184 228 RTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFSFPWPVNHTSLSPDGKLLVIVGDNP-EGILVD 306 (448)
Q Consensus 228 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~-~i~i~d 306 (448)
.+..+ .. +..+ .++|++..++++++.++.|++||+.+.+.+..+.....+.+++|+|++++++++..++ .+.+||
T Consensus 68 ~~~~~-~~-~~~~--~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d 143 (300)
T TIGR03866 68 TLPSG-PD-PELF--ALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFID 143 (300)
T ss_pred eccCC-CC-ccEE--EECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEe
Confidence 22222 22 2233 4488888566666778999999999988888777666678999999999999988765 467789
Q ss_pred CCCCceeEeeecCCCcEEEEEEcCCCCEEEEE-eCCCcEEEEEccCCCcceEEEccCC-----C--CeEEEEEcCCCCEE
Q 013184 307 SQTGKAIMPLCGHLDFSFASAWHPDGRIFATG-NQDKTCRVWDVRNLSKSVAVLKGNL-----G--AIRSIRFTSDGNFM 378 (448)
Q Consensus 307 ~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~-----~--~v~~l~~sp~g~~l 378 (448)
..+++.+..+.. ...+.+++|+|+|++|+++ ..++.|++||+.+ .+.+..+..+. . ....++|+|+|+++
T Consensus 144 ~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~ 221 (300)
T TIGR03866 144 TKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVAT-RKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTA 221 (300)
T ss_pred CCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCc-ceeeeeeeecccccccccCCccceEECCCCCEE
Confidence 988877665442 2345679999999988554 4689999999986 55555544221 1 23468899999986
Q ss_pred EEE-eCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEe
Q 013184 379 AMA-EPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVW 425 (448)
Q Consensus 379 ~s~-~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~ 425 (448)
+++ ..++.|.+||+.+++....+ .+...+.+++|+|+|++|++++.
T Consensus 222 ~~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~ 268 (300)
T TIGR03866 222 FVALGPANRVAVVDAKTYEVLDYL-LVGQRVWQLAFTPDEKYLLTTNG 268 (300)
T ss_pred EEEcCCCCeEEEEECCCCcEEEEE-EeCCCcceEEECCCCCEEEEEcC
Confidence 554 45668999999887766544 34457899999999999998753
No 107
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.89 E-value=5.4e-22 Score=175.35 Aligned_cols=283 Identities=18% Similarity=0.223 Sum_probs=212.5
Q ss_pred cceeeeCCCCeEEEe-cCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe---------cCCEEE
Q 013184 136 RNLVWSTSKHDVYLM-SHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV---------RDNLLI 205 (448)
Q Consensus 136 r~l~~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~---------~~~~lv 205 (448)
..+-|+|.+..++.. .++.+.+|++......+-. .+ ..+..+++. ..-..+.-|....+ +.++++
T Consensus 53 kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~--~~-~~~~~~~~~--~r~~eg~tvydy~wYs~M~s~qP~t~l~a 127 (406)
T KOG2919|consen 53 KGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKA--DG-PLNFSKHLS--YRYQEGETVYDYCWYSRMKSDQPSTNLFA 127 (406)
T ss_pred ccceeCCCCceEEeecccCeeeEEecChhhcccCC--CC-cccccccee--EEeccCCEEEEEEeeeccccCCCccceee
Confidence 345799999887776 4777999997542211110 00 111111111 00001112333222 668899
Q ss_pred EEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEec-CCceEEE--------Eee
Q 013184 206 AGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDM-ERFQLSK--------HFS 276 (448)
Q Consensus 206 sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~-~~~~~~~--------~~~ 276 (448)
+.+.+.-|.+|+.-+++.....+...+......+.++.|+|+|. .|++|. ...|++||+ +.|+-.. .+.
T Consensus 128 ~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGe-qlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~g 205 (406)
T KOG2919|consen 128 VSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGE-QLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFG 205 (406)
T ss_pred eccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCC-eEeecc-cceEEEeeccCCCCCCcchhhhhccccc
Confidence 99999999999999888766666667777788888888999997 566554 578999999 4444221 122
Q ss_pred cCCCeeEEEECC-CCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeC-CCcEEEEEccCCCc
Q 013184 277 FPWPVNHTSLSP-DGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQ-DKTCRVWDVRNLSK 354 (448)
Q Consensus 277 ~~~~v~~~~~sp-~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~-d~~i~iwd~~~~~~ 354 (448)
..+-|.|++|+| +.+.+++++....+-|+.-..+.++..+-+|.+.|+.++|.++|+.|.+|+. +-.|..||+|....
T Consensus 206 q~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~ 285 (406)
T KOG2919|consen 206 QKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRD 285 (406)
T ss_pred ccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccc
Confidence 367799999999 6779999999999999988888999999999999999999999999999976 66799999999888
Q ss_pred ceEEEccCCC-CeEEEEE--cCCCCEEEEEeCCCeEEEEECCC-CceeeeeecCcCceEEEEEccCCCeEEEEEe
Q 013184 355 SVAVLKGNLG-AIRSIRF--TSDGNFMAMAEPADFVHVYDAKN-GFEKEQEIDFFGEISGMTFSPDTEALFIGVW 425 (448)
Q Consensus 355 ~~~~~~~~~~-~v~~l~~--sp~g~~l~s~~~d~~v~vwd~~~-~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~ 425 (448)
++..+..|.+ .-..|.| .|+|++|++|+.+|.|++||++. +..+..+..+..-+++++++|-=..+++++.
T Consensus 286 pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssG 360 (406)
T KOG2919|consen 286 PVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSG 360 (406)
T ss_pred hhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccC
Confidence 8888888766 3334444 68999999999999999999998 6667777778889999999999888888764
No 108
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=4.1e-21 Score=177.10 Aligned_cols=272 Identities=14% Similarity=0.161 Sum_probs=206.5
Q ss_pred eeeCCCCeEEEec-CCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCC-EEEEEeCCCeEE
Q 013184 139 VWSTSKHDVYLMS-HFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDN-LLIAGGFQGELI 214 (448)
Q Consensus 139 ~~~~~~~~v~~~~-~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~-~lvsg~~dg~i~ 214 (448)
-+.+..-.+.+++ ++.++++.+.......+.++. +...+|.+..+ +|. .+++++....+.
T Consensus 220 ~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~----------------l~~fPi~~a~f~p~G~~~i~~s~rrky~y 283 (514)
T KOG2055|consen 220 QFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIH----------------LEKFPIQKAEFAPNGHSVIFTSGRRKYLY 283 (514)
T ss_pred EecCCCceEEEecCCCcEEEEEecCccChhheeee----------------eccCccceeeecCCCceEEEecccceEEE
Confidence 3445555555554 677888876443333333222 11224555555 777 899999999999
Q ss_pred EEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEeecCCCeeEEEECCCCCEEE
Q 013184 215 CKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFSFPWPVNHTSLSPDGKLLV 294 (448)
Q Consensus 215 vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 294 (448)
.||+.+.+...................+ +++++ +|+..++.|.|.+....+++.+..++-.+.|..++|+.+++.|+
T Consensus 284 syDle~ak~~k~~~~~g~e~~~~e~FeV--Shd~~-fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~ 360 (514)
T KOG2055|consen 284 SYDLETAKVTKLKPPYGVEEKSMERFEV--SHDSN-FIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELL 360 (514)
T ss_pred EeeccccccccccCCCCcccchhheeEe--cCCCC-eEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEE
Confidence 9999887755444444444334444444 78877 88889999999999999999999999999999999999999999
Q ss_pred EEecCCcEEEEECCCCceeEeeecCC-CcEEEEEEcCCCCEEEEEeCCCcEEEEEccC-----CCcceEEEccCCCCeEE
Q 013184 295 IVGDNPEGILVDSQTGKAIMPLCGHL-DFSFASAWHPDGRIFATGNQDKTCRVWDVRN-----LSKSVAVLKGNLGAIRS 368 (448)
Q Consensus 295 ~~~~d~~i~i~d~~~~~~~~~l~~h~-~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~-----~~~~~~~~~~~~~~v~~ 368 (448)
+++.+|.|.+||++...+++.+.... -.-++++.+++|.|||+|+..|.|.|||..+ ..+++..+..-...|++
T Consensus 361 ~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Its 440 (514)
T KOG2055|consen 361 ASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITS 440 (514)
T ss_pred EEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeee
Confidence 99999999999999999998886321 2235778889999999999999999999642 24667777777788999
Q ss_pred EEEcCCCCEEEEEeC--CCeEEEEECCCCceeeeeec---CcCceEEEEEccCCCeEEEEEecCCc
Q 013184 369 IRFTSDGNFMAMAEP--ADFVHVYDAKNGFEKEQEID---FFGEISGMTFSPDTEALFIGVWDRTY 429 (448)
Q Consensus 369 l~~sp~g~~l~s~~~--d~~v~vwd~~~~~~~~~~~~---~~~~v~~~~fspdg~~L~~~~~D~~~ 429 (448)
++|+|+++.||.++. .+.+++-.+.+......++. .-+.|++|+|||.|-+|++|..++.+
T Consensus 441 l~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv 506 (514)
T KOG2055|consen 441 LQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRV 506 (514)
T ss_pred eeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCce
Confidence 999999999998875 46799988887554433332 23679999999999999999988654
No 109
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.89 E-value=1.7e-21 Score=187.87 Aligned_cols=240 Identities=16% Similarity=0.199 Sum_probs=191.8
Q ss_pred eeeEEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCC-
Q 013184 192 TQVSTLAV--RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMER- 268 (448)
Q Consensus 192 ~~i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~- 268 (448)
..|.++++ ++++|++|..-|+|+|+++...... . ....|...+.++.+.+..-+..+|++++.|..|.|||+..
T Consensus 460 ~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~--~-~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn 536 (1080)
T KOG1408|consen 460 FGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYT--C-FMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN 536 (1080)
T ss_pred cceEEEEECCCcceecccCccCceEEEEehhhhhh--h-heecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc
Confidence 35566655 9999999999999999999765532 2 2334556667888766555667999999999999999864
Q ss_pred ceEEEEee-cCCCeeEEEECCCC--CEEEEEecCCcEEEEECCCCceeEeeec-----CCCcEEEEEEcCCCCEEEEEeC
Q 013184 269 FQLSKHFS-FPWPVNHTSLSPDG--KLLVIVGDNPEGILVDSQTGKAIMPLCG-----HLDFSFASAWHPDGRIFATGNQ 340 (448)
Q Consensus 269 ~~~~~~~~-~~~~v~~~~~sp~~--~~l~~~~~d~~i~i~d~~~~~~~~~l~~-----h~~~v~~~~~~p~g~~l~s~~~ 340 (448)
..+++++. |...|+++.|.-.| ..+++++.|..|.+--.+.......+.. ....++.++..|..++++++++
T Consensus 537 y~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQ 616 (1080)
T KOG1408|consen 537 YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQ 616 (1080)
T ss_pred cchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEec
Confidence 45667777 89999999998876 6788999997776533221111111211 2356889999999999999999
Q ss_pred CCcEEEEEccCCCcceEEEcc---CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCC
Q 013184 341 DKTCRVWDVRNLSKSVAVLKG---NLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDT 417 (448)
Q Consensus 341 d~~i~iwd~~~~~~~~~~~~~---~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg 417 (448)
|+.|+||++.+ ++.++.+++ |.+..-.+...|.|-|||+.+.|.++.++|..+|+++.+..+|...|+++.|++|.
T Consensus 617 Drnirif~i~s-gKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDC 695 (1080)
T KOG1408|consen 617 DRNIRIFDIES-GKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDC 695 (1080)
T ss_pred ccceEEEeccc-cceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccc
Confidence 99999999987 888888875 55677789999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEecCCcceEEEEecc
Q 013184 418 EALFIGVWDRTYGSLLQYNRC 438 (448)
Q Consensus 418 ~~L~~~~~D~~~~~ll~~~~~ 438 (448)
+.|++.+.|+. +.-|.-+
T Consensus 696 kHlISvsgDgC---IFvW~lp 713 (1080)
T KOG1408|consen 696 KHLISVSGDGC---IFVWKLP 713 (1080)
T ss_pred hhheeecCCce---EEEEECc
Confidence 99999999954 4444433
No 110
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=7.8e-21 Score=188.50 Aligned_cols=232 Identities=16% Similarity=0.256 Sum_probs=185.6
Q ss_pred eEEEEe--cCCEEEEEeCCCeEEEEEcCCC-CceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCce
Q 013184 194 VSTLAV--RDNLLIAGGFQGELICKYLDQP-GVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQ 270 (448)
Q Consensus 194 i~~l~~--~~~~lvsg~~dg~i~vw~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~ 270 (448)
.+.+++ +|+.|++++.||.|++|+.... ... .+...+...+.++.. .+ .+|++|+.+++|.+|....++
T Consensus 16 ~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P---~ti~~~g~~v~~ia~----~s-~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 16 LTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEP---ETIDISGELVSSIAC----YS-NHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred eEEEEEcCCCCEEEEecCCCceEEeecCCcccCC---chhhccCceeEEEee----cc-cceEEeeccceEEEeeCCCCC
Confidence 445555 8999999999999999997665 221 111113333444433 22 289999999999999998887
Q ss_pred EEEEee-cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 013184 271 LSKHFS-FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDV 349 (448)
Q Consensus 271 ~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~ 349 (448)
.-..+. +.-++++++++.+|+++|.|++|-.|++.++.+......+.+|.++|.++.|+|.+.+||+.+.||.|++|++
T Consensus 88 ~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~ 167 (933)
T KOG1274|consen 88 EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDL 167 (933)
T ss_pred ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEc
Confidence 665554 7788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcceEEEccC--------CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeec--CcCceEEEEEccCCCe
Q 013184 350 RNLSKSVAVLKGN--------LGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEID--FFGEISGMTFSPDTEA 419 (448)
Q Consensus 350 ~~~~~~~~~~~~~--------~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~--~~~~v~~~~fspdg~~ 419 (448)
.+ +.+...+.+- ...+..++|+|+|..++..+.++.|++|+...+.....+.. +...+..++|+|+|+|
T Consensus 168 ~~-~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~Y 246 (933)
T KOG1274|consen 168 QD-GILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKY 246 (933)
T ss_pred cc-chhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcE
Confidence 76 5555444431 34567899999988888888999999999988877766654 3344999999999999
Q ss_pred EEEEEecCCcceEEEEec
Q 013184 420 LFIGVWDRTYGSLLQYNR 437 (448)
Q Consensus 420 L~~~~~D~~~~~ll~~~~ 437 (448)
||++..|+ .++-|+-
T Consensus 247 iAAs~~~g---~I~vWnv 261 (933)
T KOG1274|consen 247 IAASTLDG---QILVWNV 261 (933)
T ss_pred EeeeccCC---cEEEEec
Confidence 99998884 4444443
No 111
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.89 E-value=1.2e-21 Score=188.66 Aligned_cols=226 Identities=16% Similarity=0.188 Sum_probs=189.7
Q ss_pred eEEEEe-cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEE
Q 013184 194 VSTLAV-RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLS 272 (448)
Q Consensus 194 i~~l~~-~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~ 272 (448)
|..+++ ++..++++|.||++++|.-.............+++-+...+++.. ..+-.+++|++|..+.+|.+.+..+.
T Consensus 17 Vr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e--~~~~~l~~g~~D~~i~v~~~~~~~P~ 94 (745)
T KOG0301|consen 17 VRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAE--SDKGRLVVGGMDTTIIVFKLSQAEPL 94 (745)
T ss_pred hheeEecCCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceecc--ccCcceEeecccceEEEEecCCCCch
Confidence 566666 667799999999999999766554333333333333333366643 33337999999999999999999999
Q ss_pred EEee-cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccC
Q 013184 273 KHFS-FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRN 351 (448)
Q Consensus 273 ~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~ 351 (448)
..+. |...|.|++...++. +++|+.|.++++|- .+++...+++|...|++++.-|.+ .++||+.|++|++|.-
T Consensus 95 ~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~--~~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~-- 168 (745)
T KOG0301|consen 95 YTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWR--IGELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG-- 168 (745)
T ss_pred hhhhccccceeeeecCCcCc-eEecccccceEEec--chhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--
Confidence 8888 999999999887777 99999999999995 567777899999999999999987 8999999999999975
Q ss_pred CCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEecCCcc
Q 013184 352 LSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDRTYG 430 (448)
Q Consensus 352 ~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~~~ 430 (448)
++.++++.+|...|+.+++-|++. +++++.||.|++|++ +|..+....+|...|.+++..+++..+++++.|++++
T Consensus 169 -~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlr 244 (745)
T KOG0301|consen 169 -GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLR 244 (745)
T ss_pred -CchhhhhccchhheeeeEEecCCC-eEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEE
Confidence 788999999999999999998765 568889999999998 7889999999999999999888889999999998754
No 112
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.89 E-value=1.3e-22 Score=181.70 Aligned_cols=225 Identities=16% Similarity=0.205 Sum_probs=185.9
Q ss_pred eeEEEEecC---CEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCc
Q 013184 193 QVSTLAVRD---NLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERF 269 (448)
Q Consensus 193 ~i~~l~~~~---~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~ 269 (448)
.|.+|+-.. ..+++|+.||.|++|++..... ......|.+.++.+++.+ ..+++++.|.+|+.|-++.
T Consensus 68 GV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~---~~~f~AH~G~V~Gi~v~~-----~~~~tvgdDKtvK~wk~~~- 138 (433)
T KOG0268|consen 68 GVSCLAKHPNKLSTVASGSCDGEVKIWNLSQREC---IRTFKAHEGLVRGICVTQ-----TSFFTVGDDKTVKQWKIDG- 138 (433)
T ss_pred ccchhhcCcchhhhhhccccCceEEEEehhhhhh---hheeecccCceeeEEecc-----cceEEecCCcceeeeeccC-
Confidence 477777733 4689999999999999987543 455567888999998833 3689999999999999875
Q ss_pred eEEEEeecCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCC-CEEEEEeCCCcEEEEE
Q 013184 270 QLSKHFSFPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDG-RIFATGNQDKTCRVWD 348 (448)
Q Consensus 270 ~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g-~~l~s~~~d~~i~iwd 348 (448)
.++.++-....+..+.-+..+..++++|. .|.|||.+...+++++....+.+.++.|+|.. ..|++|+.|++|.|||
T Consensus 139 ~p~~tilg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD 216 (433)
T KOG0268|consen 139 PPLHTILGKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYD 216 (433)
T ss_pred CcceeeeccccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEe
Confidence 47777777777888888877888998887 49999999999999999888999999999954 5788888999999999
Q ss_pred ccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCcee-eeeecCcCceEEEEEccCCCeEEEEEecC
Q 013184 349 VRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEK-EQEIDFFGEISGMTFSPDTEALFIGVWDR 427 (448)
Q Consensus 349 ~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~-~~~~~~~~~v~~~~fspdg~~L~~~~~D~ 427 (448)
+|. ..+++.+.-. ..-+.++|+|.+-.+++|+.|..++.||++..... ....+|.+.|.++.|||.|+-+++|+.|.
T Consensus 217 ~R~-~~Pl~KVi~~-mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDk 294 (433)
T KOG0268|consen 217 LRQ-ASPLKKVILT-MRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDK 294 (433)
T ss_pred ccc-CCccceeeee-ccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccc
Confidence 998 6666555432 23578999998888899999999999999876544 44667889999999999999999999998
Q ss_pred Ccc
Q 013184 428 TYG 430 (448)
Q Consensus 428 ~~~ 430 (448)
+++
T Consensus 295 sIR 297 (433)
T KOG0268|consen 295 SIR 297 (433)
T ss_pred eEE
Confidence 764
No 113
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=1.5e-20 Score=165.86 Aligned_cols=243 Identities=14% Similarity=0.190 Sum_probs=183.9
Q ss_pred CcceeeecccCCCCCcccccccceeeeCCCCeEEEecCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceee
Q 013184 115 KYYEFWRNTRSVKSTILHFQLRNLVWSTSKHDVYLMSHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQV 194 (448)
Q Consensus 115 ~~~~f~~~~~~~~~~~~hfq~r~l~~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i 194 (448)
+.|.|..|...+.+ +++...-.+--++|.+|++||..+... +-.+-.|. ..|
T Consensus 35 ~lF~~~aH~~sita----------vAVs~~~~aSGssDetI~IYDm~k~~q--lg~ll~Ha----------------gsi 86 (362)
T KOG0294|consen 35 PLFAFSAHAGSITA----------LAVSGPYVASGSSDETIHIYDMRKRKQ--LGILLSHA----------------GSI 86 (362)
T ss_pred ccccccccccceeE----------EEecceeEeccCCCCcEEEEeccchhh--hcceeccc----------------cce
Confidence 56777777777664 333332222223577899999855322 22222222 258
Q ss_pred EEEEecC----CEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCce
Q 013184 195 STLAVRD----NLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQ 270 (448)
Q Consensus 195 ~~l~~~~----~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~ 270 (448)
+++.|.. +.|++|+.||.|.+|+...- .+......|.+.++.+++ +|++. +.++.+.|+.+++|++-+|+
T Consensus 87 taL~F~~~~S~shLlS~sdDG~i~iw~~~~W---~~~~slK~H~~~Vt~lsi--HPS~K-LALsVg~D~~lr~WNLV~Gr 160 (362)
T KOG0294|consen 87 TALKFYPPLSKSHLLSGSDDGHIIIWRVGSW---ELLKSLKAHKGQVTDLSI--HPSGK-LALSVGGDQVLRTWNLVRGR 160 (362)
T ss_pred EEEEecCCcchhheeeecCCCcEEEEEcCCe---EEeeeecccccccceeEe--cCCCc-eEEEEcCCceeeeehhhcCc
Confidence 9999832 37999999999999997653 234444556666888888 89987 77888889999999999988
Q ss_pred EEEEeecCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 013184 271 LSKHFSFPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVR 350 (448)
Q Consensus 271 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~ 350 (448)
.............+.|+|.|.++++++.+ .|-||.+.+-+....+.. ...+.++.|- ++.+|++|..++.|++||..
T Consensus 161 ~a~v~~L~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~-~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~d 237 (362)
T KOG0294|consen 161 VAFVLNLKNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIEN-PKRILCATFL-DGSELLVGGDNEWISLKDTD 237 (362)
T ss_pred cceeeccCCcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhc-cccceeeeec-CCceEEEecCCceEEEeccC
Confidence 77776655555669999999999988887 688998887766555542 3456667665 67799999999999999997
Q ss_pred CCCcceEEEccCCCCeEEEEE--cCCCCEEEEEeCCCeEEEEECCCC
Q 013184 351 NLSKSVAVLKGNLGAIRSIRF--TSDGNFMAMAEPADFVHVYDAKNG 395 (448)
Q Consensus 351 ~~~~~~~~~~~~~~~v~~l~~--sp~g~~l~s~~~d~~v~vwd~~~~ 395 (448)
. ..+...+.+|...|..+.+ .|++.+|++++.||.|+|||+...
T Consensus 238 s-~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 238 S-DTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred C-CccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 6 8889999999999999984 467899999999999999999865
No 114
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=4.3e-21 Score=169.16 Aligned_cols=256 Identities=16% Similarity=0.241 Sum_probs=203.7
Q ss_pred cCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCCCeEEEEEc------CCCC
Q 013184 151 SHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQGELICKYL------DQPG 222 (448)
Q Consensus 151 ~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~dg~i~vw~~------~~~~ 222 (448)
.+.+-++|.+.+ ..++....||... |.++.| .+.++++++.|++-.||.. ..+.
T Consensus 168 ADhTA~iWs~Es--g~CL~~Y~GH~GS----------------VNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~ 229 (481)
T KOG0300|consen 168 ADHTARIWSLES--GACLATYTGHTGS----------------VNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNN 229 (481)
T ss_pred cccceeEEeecc--ccceeeecccccc----------------eeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCC
Confidence 477899999866 5788888999874 899999 7789999999999999972 1100
Q ss_pred -------------------------------ceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceE
Q 013184 223 -------------------------------VSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQL 271 (448)
Q Consensus 223 -------------------------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~ 271 (448)
......-..+|.+++.+..| -. |...+++++.|.+..+||++++++
T Consensus 230 a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dW--L~-gg~Q~vTaSWDRTAnlwDVEtge~ 306 (481)
T KOG0300|consen 230 APSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDW--LA-GGQQMVTASWDRTANLWDVETGEV 306 (481)
T ss_pred CCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhh--hc-CcceeeeeeccccceeeeeccCce
Confidence 00001112345555555555 23 345899999999999999999999
Q ss_pred EEEee-cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCC-ceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 013184 272 SKHFS-FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTG-KAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDV 349 (448)
Q Consensus 272 ~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~-~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~ 349 (448)
+..+. |....+.++-+|..+++++.+.|.+.++||.+.. +.+..|+||.+.|+++.|.-+. .+++|+.|.+|++||+
T Consensus 307 v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdL 385 (481)
T KOG0300|consen 307 VNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDL 385 (481)
T ss_pred eccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCCCceEEEeee
Confidence 99888 9999999999999999999999999999999843 3467899999999999998654 5889999999999999
Q ss_pred cCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeee-----ecCcCceEEEEEccCC--CeEEE
Q 013184 350 RNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQE-----IDFFGEISGMTFSPDT--EALFI 422 (448)
Q Consensus 350 ~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~-----~~~~~~v~~~~fspdg--~~L~~ 422 (448)
++...++.++. -.++++.++.+..+..||.--.+..|++||+.. ..+..+ .+|..-|++++|..+- .-|++
T Consensus 386 rNMRsplATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG-~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLft 463 (481)
T KOG0300|consen 386 RNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNG-NRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFT 463 (481)
T ss_pred ccccCcceeee-cCCccceeEeecCCceEEeccCCceEEEEecCC-CccccCCcccccccceeeeeeeccccCccccccc
Confidence 99888888887 456889999998888999888888999999864 443333 3688889999998542 45778
Q ss_pred EEecCCcc
Q 013184 423 GVWDRTYG 430 (448)
Q Consensus 423 ~~~D~~~~ 430 (448)
++.|+.+-
T Consensus 464 cGFDR~v~ 471 (481)
T KOG0300|consen 464 CGFDRMVA 471 (481)
T ss_pred ccccceee
Confidence 88886543
No 115
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=8.8e-21 Score=174.25 Aligned_cols=223 Identities=16% Similarity=0.149 Sum_probs=169.2
Q ss_pred cCCEEEEEeCCCeEEEEEcCCCCceeEEEee------------------cCCCCceeeEEEEeCCCCCeeEEEEeCCCcE
Q 013184 200 RDNLLIAGGFQGELICKYLDQPGVSFCSRTT------------------YDENAITNAVEIYNSPSGGIHFMASNNDCGV 261 (448)
Q Consensus 200 ~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~------------------~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v 261 (448)
.|+++|.|+++-.|.|||++-....+...+. .+|...+..+.+ +..-...|++||.|.+|
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~--n~~~~nVLaSgsaD~TV 268 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSW--NRNFRNVLASGSADKTV 268 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHh--ccccceeEEecCCCceE
Confidence 5789999999999999999754422111111 122222233333 55556699999999999
Q ss_pred EEEecCCceEEEEee-cCCCeeEEEECC-CCCEEEEEecCCcEEEEECCCCcee-EeeecCCCcEEEEEEcCCC-CEEEE
Q 013184 262 RDFDMERFQLSKHFS-FPWPVNHTSLSP-DGKLLVIVGDNPEGILVDSQTGKAI-MPLCGHLDFSFASAWHPDG-RIFAT 337 (448)
Q Consensus 262 ~iwd~~~~~~~~~~~-~~~~v~~~~~sp-~~~~l~~~~~d~~i~i~d~~~~~~~-~~l~~h~~~v~~~~~~p~g-~~l~s 337 (448)
++||+.++++...+. |..+|.++.|+| .+..|++|+.|++|.+.|.+..... ..++ ..+.|-.++|.|.. ..+++
T Consensus 269 ~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VEkv~w~~~se~~f~~ 347 (463)
T KOG0270|consen 269 KLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVEKVAWDPHSENSFFV 347 (463)
T ss_pred EEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccceEEEEecCCCceeEEE
Confidence 999999999999999 899999999999 6788999999999999999853222 1222 35678899999954 57888
Q ss_pred EeCCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCCceeeeeecC---cCceEEEEE
Q 013184 338 GNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDG-NFMAMAEPADFVHVYDAKNGFEKEQEIDF---FGEISGMTF 413 (448)
Q Consensus 338 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g-~~l~s~~~d~~v~vwd~~~~~~~~~~~~~---~~~v~~~~f 413 (448)
+..||+|+-+|+|+.++++.+++.|.++|.+|++++.- .+|++++.++.|++|++...... ....| -+...++++
T Consensus 348 ~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~-~v~~~~~~~~rl~c~~~ 426 (463)
T KOG0270|consen 348 STDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPK-SVKEHSFKLGRLHCFAL 426 (463)
T ss_pred ecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCc-ccccccccccceeeccc
Confidence 88999999999999899999999999999999998754 57889999999999998654332 11122 244667778
Q ss_pred ccCCCeE-EEEEec
Q 013184 414 SPDTEAL-FIGVWD 426 (448)
Q Consensus 414 spdg~~L-~~~~~D 426 (448)
.|+-.++ +.|+..
T Consensus 427 ~~~~a~~la~GG~k 440 (463)
T KOG0270|consen 427 DPDVAFTLAFGGEK 440 (463)
T ss_pred CCCcceEEEecCcc
Confidence 8875544 444443
No 116
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.88 E-value=4.2e-21 Score=177.06 Aligned_cols=232 Identities=15% Similarity=0.199 Sum_probs=193.0
Q ss_pred eeEEEEe--cCCEEEEEeCCCeEEEEEcCCCCce-eEEE-------------ee-cCCCCceeeEEEEeCCCCCeeEEEE
Q 013184 193 QVSTLAV--RDNLLIAGGFQGELICKYLDQPGVS-FCSR-------------TT-YDENAITNAVEIYNSPSGGIHFMAS 255 (448)
Q Consensus 193 ~i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~-~~~~-------------~~-~~~~~~~~~v~~~~~~~~~~~l~s~ 255 (448)
.|.+|+. ++++.++++.+|+|.-|++.++... .... .. ..|...+.++++ +++|. +|++|
T Consensus 144 s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~av--S~Dgk-ylatg 220 (479)
T KOG0299|consen 144 SVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAV--SSDGK-YLATG 220 (479)
T ss_pred cceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEE--cCCCc-EEEec
Confidence 3677777 8889999999999999998766522 0000 11 134444445555 88887 99999
Q ss_pred eCCCcEEEEecCCceEEEEee-cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCE
Q 013184 256 NNDCGVRDFDMERFQLSKHFS-FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRI 334 (448)
Q Consensus 256 s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~ 334 (448)
+.|..|.||+..+.+.++.+. |.+.|.+++|-.....+++++.|+.|++|++.....+.++.+|.+.|.++....-++.
T Consensus 221 g~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~ 300 (479)
T KOG0299|consen 221 GRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERC 300 (479)
T ss_pred CCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccce
Confidence 999999999999999999987 9999999999998889999999999999999998889999999999999988888888
Q ss_pred EEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeee-cC---------
Q 013184 335 FATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEI-DF--------- 404 (448)
Q Consensus 335 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~--------- 404 (448)
+-+|+.|+++++|++. ......+.++.+.+-|++|-.+ ..+++|+.+|.|.+|++...+.+.... .|
T Consensus 301 vtVGgrDrT~rlwKi~--eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~ 377 (479)
T KOG0299|consen 301 VTVGGRDRTVRLWKIP--EESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPV 377 (479)
T ss_pred EEeccccceeEEEecc--ccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEeeccccccCCcccc
Confidence 8888899999999994 4556678889999999999754 678899999999999998877665433 12
Q ss_pred --cCceEEEEEccCCCeEEEEEecCCcc
Q 013184 405 --FGEISGMTFSPDTEALFIGVWDRTYG 430 (448)
Q Consensus 405 --~~~v~~~~fspdg~~L~~~~~D~~~~ 430 (448)
...|++++..|....+++|+++|.++
T Consensus 378 ~~~~Witsla~i~~sdL~asGS~~G~vr 405 (479)
T KOG0299|consen 378 NGNFWITSLAVIPGSDLLASGSWSGCVR 405 (479)
T ss_pred ccccceeeeEecccCceEEecCCCCceE
Confidence 12799999999999999999998754
No 117
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=3e-20 Score=178.81 Aligned_cols=236 Identities=15% Similarity=0.223 Sum_probs=194.9
Q ss_pred eeeEEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCc
Q 013184 192 TQVSTLAV--RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERF 269 (448)
Q Consensus 192 ~~i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~ 269 (448)
..|.+||+ +.+.||.+-.+|.|-+|++...- .....+..+.+..+.+++| .+.+ .|++.+-+|.|.-||+.++
T Consensus 26 s~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w-~~~~vi~g~~drsIE~L~W--~e~~--RLFS~g~sg~i~EwDl~~l 100 (691)
T KOG2048|consen 26 SEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNW-FLEPVIHGPEDRSIESLAW--AEGG--RLFSSGLSGSITEWDLHTL 100 (691)
T ss_pred cceEEEEEeccCCceeeeccCCcEEEEccCCCc-eeeEEEecCCCCceeeEEE--ccCC--eEEeecCCceEEEEecccC
Confidence 46999999 77889999999999999998743 3345566677888888888 4444 6999999999999999999
Q ss_pred eEEEEee-cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeE--eeecCCCcEEEEEEcCCCCEEEEEeCCCcEEE
Q 013184 270 QLSKHFS-FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIM--PLCGHLDFSFASAWHPDGRIFATGNQDKTCRV 346 (448)
Q Consensus 270 ~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~--~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~i 346 (448)
+....+. ..+.|++++.+|.+..+++|++||.+.+++...++... .|.-.++.+.+++|+|++..|++|+.||.|++
T Consensus 101 k~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iri 180 (691)
T KOG2048|consen 101 KQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRI 180 (691)
T ss_pred ceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEE
Confidence 9988888 78999999999999999999999988888887776544 34445688999999999999999999999999
Q ss_pred EEccCCCcceEEEcc--------CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCC
Q 013184 347 WDVRNLSKSVAVLKG--------NLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTE 418 (448)
Q Consensus 347 wd~~~~~~~~~~~~~--------~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~ 418 (448)
||+.. +..++..+. ...-|.++.|-.+ ..|++|...|+|.+||...+..+..+..|.+.|.+++.++++.
T Consensus 181 wd~~~-~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d 258 (691)
T KOG2048|consen 181 WDVKS-GQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNED 258 (691)
T ss_pred EEcCC-CceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCC
Confidence 99976 444442211 1223666776655 4789999999999999999999888888999999999999999
Q ss_pred eEEEEEecCCcceEEE
Q 013184 419 ALFIGVWDRTYGSLLQ 434 (448)
Q Consensus 419 ~L~~~~~D~~~~~ll~ 434 (448)
++++++.|+++-.+-+
T Consensus 259 ~vfsaGvd~~ii~~~~ 274 (691)
T KOG2048|consen 259 RVFSAGVDPKIIQYSL 274 (691)
T ss_pred eEEEccCCCceEEEEe
Confidence 9999999976544433
No 118
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.88 E-value=1.4e-20 Score=162.37 Aligned_cols=194 Identities=15% Similarity=0.155 Sum_probs=170.1
Q ss_pred CCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee-cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCC
Q 013184 232 DENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS-FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTG 310 (448)
Q Consensus 232 ~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~ 310 (448)
+|..+..-+.. +.+|. +|++|+.|.+..+|--..|+.+.++. |.+.|+|+...-+.+.+++|+.|.++++||+.+|
T Consensus 8 GHERplTqiKy--N~eGD-LlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 8 GHERPLTQIKY--NREGD-LLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred cCccccceEEe--cCCCc-EEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 34555555555 77776 99999999999999988899999998 9999999999999999999999999999999999
Q ss_pred ceeEeeecCCCcEEEEEEcCCCCEEEEEeC-----CCcEEEEEccCC------CcceEEEccCCCCeEEEEEcCCCCEEE
Q 013184 311 KAIMPLCGHLDFSFASAWHPDGRIFATGNQ-----DKTCRVWDVRNL------SKSVAVLKGNLGAIRSIRFTSDGNFMA 379 (448)
Q Consensus 311 ~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~-----d~~i~iwd~~~~------~~~~~~~~~~~~~v~~l~~sp~g~~l~ 379 (448)
+.+..++ ...+|..+.|+++|++++.... .+.|.++|++.. ..++..+..+.+.++.+.|+|-+++|+
T Consensus 85 k~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii 163 (327)
T KOG0643|consen 85 KQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETII 163 (327)
T ss_pred cEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEE
Confidence 9999987 5678999999999998887754 467999999842 356888888899999999999999999
Q ss_pred EEeCCCeEEEEECCCCceeeee-ecCcCceEEEEEccCCCeEEEEEecCCc
Q 013184 380 MAEPADFVHVYDAKNGFEKEQE-IDFFGEISGMTFSPDTEALFIGVWDRTY 429 (448)
Q Consensus 380 s~~~d~~v~vwd~~~~~~~~~~-~~~~~~v~~~~fspdg~~L~~~~~D~~~ 429 (448)
+|..+|.|.+||+++|+..... ..|...|+.|.|+||..++++++.|.+.
T Consensus 164 ~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dtta 214 (327)
T KOG0643|consen 164 AGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTA 214 (327)
T ss_pred EecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccc
Confidence 9999999999999998766443 5688899999999999999999999764
No 119
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.88 E-value=1.2e-21 Score=178.32 Aligned_cols=213 Identities=20% Similarity=0.241 Sum_probs=171.1
Q ss_pred ecCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeEE
Q 013184 150 MSHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQGELICKYLDQPGVSFCS 227 (448)
Q Consensus 150 ~~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~ 227 (448)
+.++.+++|+.... .....+.||.. +|+++.+ ....+|+|+.|.+|+.||+.... |.
T Consensus 238 s~d~~~r~Wnvd~~--r~~~TLsGHtd----------------kVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~---C~ 296 (459)
T KOG0288|consen 238 SNDKNLRLWNVDSL--RLRHTLSGHTD----------------KVTAAKFKLSHSRVVSGSADRTIKLWDLQKAY---CS 296 (459)
T ss_pred cCCCceeeeeccch--hhhhhhccccc----------------ceeeehhhccccceeeccccchhhhhhhhhhh---ee
Confidence 45677999998553 33445666765 5888888 44449999999999999998743 33
Q ss_pred EeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEeecCCCeeEEEECCCCCEEEEEecCCcEEEEEC
Q 013184 228 RTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFSFPWPVNHTSLSPDGKLLVIVGDNPEGILVDS 307 (448)
Q Consensus 228 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~ 307 (448)
+.... ...++.|.. + ...+++|-.|++||+||.++..+....+..+.|+++..++++..+++++.|.++.++|+
T Consensus 297 kt~l~-~S~cnDI~~--~---~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDl 370 (459)
T KOG0288|consen 297 KTVLP-GSQCNDIVC--S---ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDL 370 (459)
T ss_pred ccccc-cccccceEe--c---ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeec
Confidence 32211 112233333 2 23688899999999999999999999998889999999999999999999999999999
Q ss_pred CCCceeEeeecC----CCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCC--CeEEEEEcCCCCEEEEE
Q 013184 308 QTGKAIMPLCGH----LDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLG--AIRSIRFTSDGNFMAMA 381 (448)
Q Consensus 308 ~~~~~~~~l~~h----~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~--~v~~l~~sp~g~~l~s~ 381 (448)
++.+..+.+... ....+.+.|||++.|+|+|+.||.|+||++.+ +++...+..... .|+++.|+|.|..|+++
T Consensus 371 Rt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~t-gKlE~~l~~s~s~~aI~s~~W~~sG~~Llsa 449 (459)
T KOG0288|consen 371 RTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFT-GKLEKVLSLSTSNAAITSLSWNPSGSGLLSA 449 (459)
T ss_pred ccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccC-ceEEEEeccCCCCcceEEEEEcCCCchhhcc
Confidence 999887776542 23378899999999999999999999999976 788777776554 49999999999999999
Q ss_pred eCCCeEEEE
Q 013184 382 EPADFVHVY 390 (448)
Q Consensus 382 ~~d~~v~vw 390 (448)
+.++.+.+|
T Consensus 450 dk~~~v~lW 458 (459)
T KOG0288|consen 450 DKQKAVTLW 458 (459)
T ss_pred cCCcceEec
Confidence 999999998
No 120
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.88 E-value=1.5e-21 Score=181.54 Aligned_cols=229 Identities=17% Similarity=0.196 Sum_probs=180.9
Q ss_pred eeEEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeEEEee--cCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCC
Q 013184 193 QVSTLAV--RDNLLIAGGFQGELICKYLDQPGVSFCSRTT--YDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMER 268 (448)
Q Consensus 193 ~i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~ 268 (448)
-|.++++ ..+.+.+|+ .|.|+||++..++........ ......+..+.+ .|+|. .|++|+.-.+|.|||+..
T Consensus 421 vVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL--~pdgr-tLivGGeastlsiWDLAa 496 (705)
T KOG0639|consen 421 VVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKL--LPDGR-TLIVGGEASTLSIWDLAA 496 (705)
T ss_pred EEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEe--cCCCc-eEEeccccceeeeeeccC
Confidence 4555555 556777777 577999999887633222111 112233344444 68886 788888899999999976
Q ss_pred ceEEEEee---cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEE
Q 013184 269 FQLSKHFS---FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCR 345 (448)
Q Consensus 269 ~~~~~~~~---~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~ 345 (448)
-.+.-..+ ..-....++.+||.+..+++..||.|.|||+.+...++.|+||.+.+.||..+++|..|.||+-|.+||
T Consensus 497 pTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvR 576 (705)
T KOG0639|consen 497 PTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVR 576 (705)
T ss_pred CCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCcccee
Confidence 54333222 223467788999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEe
Q 013184 346 VWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVW 425 (448)
Q Consensus 346 iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~ 425 (448)
.||+|. +..+.... ..+.|.++.++|+|.+|++|-.++.|.|-.. ++...+++..|.+-|.++.|++.|+++++.+.
T Consensus 577 cWDlre-grqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~-skp~kyqlhlheScVLSlKFa~cGkwfvStGk 653 (705)
T KOG0639|consen 577 CWDLRE-GRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHT-SKPEKYQLHLHESCVLSLKFAYCGKWFVSTGK 653 (705)
T ss_pred ehhhhh-hhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEec-CCccceeecccccEEEEEEecccCceeeecCc
Confidence 999997 44433322 3467999999999999999999999999885 45677888889999999999999999999988
Q ss_pred cCC
Q 013184 426 DRT 428 (448)
Q Consensus 426 D~~ 428 (448)
|.-
T Consensus 654 Dnl 656 (705)
T KOG0639|consen 654 DNL 656 (705)
T ss_pred hhh
Confidence 754
No 121
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=4.5e-21 Score=177.22 Aligned_cols=223 Identities=17% Similarity=0.205 Sum_probs=182.4
Q ss_pred eeEEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCC--
Q 013184 193 QVSTLAV--RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMER-- 268 (448)
Q Consensus 193 ~i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~-- 268 (448)
+|.+++. .|.+|+.|+-.|.|.+|.+.++.... +...|-..+.++.| +.+|. +|++|++||.|.+|.+..
T Consensus 83 ~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~---v~~aHYQ~ITcL~f--s~dgs-~iiTgskDg~V~vW~l~~lv 156 (476)
T KOG0646|consen 83 PVHALASSNLGYFLLAGTISGNLYLWELSSGILLN---VLSAHYQSITCLKF--SDDGS-HIITGSKDGAVLVWLLTDLV 156 (476)
T ss_pred ceeeeecCCCceEEEeecccCcEEEEEeccccHHH---HHHhhccceeEEEE--eCCCc-EEEecCCCccEEEEEEEeec
Confidence 5788877 77888888899999999999987532 22445555566655 66665 999999999999997642
Q ss_pred -------ceEEEEee-cCCCeeEEEECCC--CCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEE
Q 013184 269 -------FQLSKHFS-FPWPVNHTSLSPD--GKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATG 338 (448)
Q Consensus 269 -------~~~~~~~~-~~~~v~~~~~sp~--~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~ 338 (448)
-++...+. |.-+|+.+...+- ...+++++.|.++++||+..|..+.++. ....+.+++.+|-++.++.|
T Consensus 157 ~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiG 235 (476)
T KOG0646|consen 157 SADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIG 235 (476)
T ss_pred ccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEec
Confidence 34556666 8899999988763 4689999999999999999999888775 56788999999999999999
Q ss_pred eCCCcEEEEEccCCC---------------cceEEEccCCC--CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeee
Q 013184 339 NQDKTCRVWDVRNLS---------------KSVAVLKGNLG--AIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQE 401 (448)
Q Consensus 339 ~~d~~i~iwd~~~~~---------------~~~~~~~~~~~--~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~ 401 (448)
+.+|.|.+.++.+.. ..+..+.+|.+ +|+|++.+-||..|++|+.||.|.|||+.+.++++.+
T Consensus 236 t~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl 315 (476)
T KOG0646|consen 236 TEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTL 315 (476)
T ss_pred CCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHH
Confidence 999999988875432 24567888988 9999999999999999999999999999999888887
Q ss_pred ecCcCceEEEEEccCCCeEEE
Q 013184 402 IDFFGEISGMTFSPDTEALFI 422 (448)
Q Consensus 402 ~~~~~~v~~~~fspdg~~L~~ 422 (448)
....++|+.+.+.|-.+..+.
T Consensus 316 ~~~kgpVtnL~i~~~~~~~~l 336 (476)
T KOG0646|consen 316 QTSKGPVTNLQINPLERGIIL 336 (476)
T ss_pred hhhccccceeEeeccccceec
Confidence 767899999999765443333
No 122
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=4.4e-21 Score=189.25 Aligned_cols=195 Identities=18% Similarity=0.206 Sum_probs=164.0
Q ss_pred eeeEEEEe-cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCce
Q 013184 192 TQVSTLAV-RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQ 270 (448)
Q Consensus 192 ~~i~~l~~-~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~ 270 (448)
.-|..|++ ..++|++++.|.+|++|++...... ... .|+..++|++| +|.+.++|++|+-||.||||++...+
T Consensus 370 ~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL---~~F-~HndfVTcVaF--nPvDDryFiSGSLD~KvRiWsI~d~~ 443 (712)
T KOG0283|consen 370 ADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECL---KVF-SHNDFVTCVAF--NPVDDRYFISGSLDGKVRLWSISDKK 443 (712)
T ss_pred hhheecccccCCeeEeccccccEEeecCCCccee---eEE-ecCCeeEEEEe--cccCCCcEeecccccceEEeecCcCe
Confidence 36888999 8899999999999999999876543 332 56777888877 89888899999999999999999999
Q ss_pred EEEEeecCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeec---------CCCcEEEEEEcCCC-CEEEEEeC
Q 013184 271 LSKHFSFPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCG---------HLDFSFASAWHPDG-RIFATGNQ 340 (448)
Q Consensus 271 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~---------h~~~v~~~~~~p~g-~~l~s~~~ 340 (448)
++.......-|++++|.|+|+..++|+.+|.+++|++...+......- |. .|+.+.|.|.. ..+++.+.
T Consensus 444 Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSn 522 (712)
T KOG0283|consen 444 VVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSN 522 (712)
T ss_pred eEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecC
Confidence 888888778999999999999999999999999999988776654331 33 79999999843 45777788
Q ss_pred CCcEEEEEccCCCcceEEEccCCC--CeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 013184 341 DKTCRVWDVRNLSKSVAVLKGNLG--AIRSIRFTSDGNFMAMAEPADFVHVYDAKN 394 (448)
Q Consensus 341 d~~i~iwd~~~~~~~~~~~~~~~~--~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~ 394 (448)
|..|||+|.+. ...+..+++... .-....|+.||++|++|+.|..|+||++..
T Consensus 523 DSrIRI~d~~~-~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 523 DSRIRIYDGRD-KDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred CCceEEEeccc-hhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 99999999976 777888886542 335678999999999999999999999743
No 123
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=7.7e-23 Score=197.59 Aligned_cols=213 Identities=19% Similarity=0.283 Sum_probs=184.9
Q ss_pred EEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee-cCCCeeE
Q 013184 205 IAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS-FPWPVNH 283 (448)
Q Consensus 205 vsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~ 283 (448)
+.+-..-.+++|+..... .|...++++.+ -.. .+.+++|+.|..+.+|.+.....+..+. |..+|.+
T Consensus 8 m~~~~~t~Lr~~~~~~~~---------~hsaav~~lk~--~~s-~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeS 75 (825)
T KOG0267|consen 8 MKTKRATKLRVWDTREFV---------AHSAAVGCLKI--RKS-SRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIES 75 (825)
T ss_pred ceeeeeeccccccchhhh---------hhhhhhceeee--ecc-ceeeccCCCceeeccccccCCchhheeeccCCccee
Confidence 344444556677754322 34455566665 222 3479999999999999987666555555 9999999
Q ss_pred EEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCC
Q 013184 284 TSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNL 363 (448)
Q Consensus 284 ~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 363 (448)
+.|++...+|++|+.+|.|++||+..++.+++|.+|...+.++.|+|-+.++|+|+.|+.+++||++. ..|.+.+.+|.
T Consensus 76 l~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk-~Gc~~~~~s~~ 154 (825)
T KOG0267|consen 76 LTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRK-KGCSHTYKSHT 154 (825)
T ss_pred eecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhc-cCceeeecCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999997 78999999999
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEecCCcc
Q 013184 364 GAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDRTYG 430 (448)
Q Consensus 364 ~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~~~ 430 (448)
..|..++|+|+|+++++|+.|..++|||+..|+....+..|.+.+..+.|+|..-.|+.|+.|++++
T Consensus 155 ~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~ 221 (825)
T KOG0267|consen 155 RVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVR 221 (825)
T ss_pred ceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceee
Confidence 9999999999999999999999999999999999999999999999999999999999999998754
No 124
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=6.9e-21 Score=167.92 Aligned_cols=226 Identities=19% Similarity=0.185 Sum_probs=189.0
Q ss_pred eeEEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEec----
Q 013184 193 QVSTLAV--RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDM---- 266 (448)
Q Consensus 193 ~i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~---- 266 (448)
.|+-++. ...++.+++.|.+-++|.++.+.. .....+|.+.++++.| ++++. ++++++.|++..||..
T Consensus 150 GiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~C---L~~Y~GH~GSVNsikf--h~s~~-L~lTaSGD~taHIW~~av~~ 223 (481)
T KOG0300|consen 150 GIWHVAADSTQPICGTASADHTARIWSLESGAC---LATYTGHTGSVNSIKF--HNSGL-LLLTASGDETAHIWKAAVNW 223 (481)
T ss_pred ceeeehhhcCCcceeecccccceeEEeeccccc---eeeecccccceeeEEe--ccccc-eEEEccCCcchHHHHHhhcC
Confidence 4787777 345888899999999999998764 4455678888999988 66665 8999999999999961
Q ss_pred --CC------------------------------c----eEEEEee-cCCCeeEEEECCCCCEEEEEecCCcEEEEECCC
Q 013184 267 --ER------------------------------F----QLSKHFS-FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQT 309 (448)
Q Consensus 267 --~~------------------------------~----~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~ 309 (448)
.. + .++..+. |.+.|.+..|-..|+.+++++.|.+..+||+++
T Consensus 224 ~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEt 303 (481)
T KOG0300|consen 224 EVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVET 303 (481)
T ss_pred cCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeecc
Confidence 11 0 0122333 778888999999999999999999999999999
Q ss_pred CceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 013184 310 GKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHV 389 (448)
Q Consensus 310 ~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~v 389 (448)
|..++.+.||....+.++-+|..+++++++.|.+.|+||.|..-..+.++++|...|+++.|..+ ..+++|+.|.+|+|
T Consensus 304 ge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKv 382 (481)
T KOG0300|consen 304 GEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKV 382 (481)
T ss_pred CceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecC-CceeecCCCceEEE
Confidence 99999999999999999999999999999999999999999766889999999999999999875 56789999999999
Q ss_pred EECCCCceeeeeecCcCceEEEEEccCCCeEEEEEe
Q 013184 390 YDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVW 425 (448)
Q Consensus 390 wd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~ 425 (448)
||+++.......+...++++.++.+..++.+++--.
T Consensus 383 WdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhD 418 (481)
T KOG0300|consen 383 WDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHD 418 (481)
T ss_pred eeeccccCcceeeecCCccceeEeecCCceEEeccC
Confidence 999987665555556788899999877777766543
No 125
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=5.4e-20 Score=161.80 Aligned_cols=235 Identities=13% Similarity=0.130 Sum_probs=176.4
Q ss_pred eEEEEe--cCCEEEEEeCCCeEEEEEcCCCCce-eEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCC--
Q 013184 194 VSTLAV--RDNLLIAGGFQGELICKYLDQPGVS-FCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMER-- 268 (448)
Q Consensus 194 i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~-- 268 (448)
|.++.+ -|+.+++|+.|++++||+....... .+..--..|.+.+..+.+. +|.-+..+++++.|+++.||.-..
T Consensus 16 ihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WA-hPEfGqvvA~cS~Drtv~iWEE~~~~ 94 (361)
T KOG2445|consen 16 IHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWA-HPEFGQVVATCSYDRTVSIWEEQEKS 94 (361)
T ss_pred eeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEec-CccccceEEEEecCCceeeeeecccc
Confidence 666666 8999999999999999997554422 2233333455555566665 455455999999999999996421
Q ss_pred -----ce--EEEEee-cCCCeeEEEECC--CCCEEEEEecCCcEEEEECCCCc------eeEeee-------cCCCcEEE
Q 013184 269 -----FQ--LSKHFS-FPWPVNHTSLSP--DGKLLVIVGDNPEGILVDSQTGK------AIMPLC-------GHLDFSFA 325 (448)
Q Consensus 269 -----~~--~~~~~~-~~~~v~~~~~sp--~~~~l~~~~~d~~i~i~d~~~~~------~~~~l~-------~h~~~v~~ 325 (448)
.+ ...++. ....|..+.|.| -|-.+|+++.||.++||+.-... ..+.++ .+..+..|
T Consensus 95 ~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~C 174 (361)
T KOG2445|consen 95 EEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFC 174 (361)
T ss_pred cccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceE
Confidence 11 222333 678899999999 68899999999999999875432 222233 36677899
Q ss_pred EEEcC---CCCEEEEEeCC-----CcEEEEEccCCC---cceEEEccCCCCeEEEEEcCCC----CEEEEEeCCCeEEEE
Q 013184 326 SAWHP---DGRIFATGNQD-----KTCRVWDVRNLS---KSVAVLKGNLGAIRSIRFTSDG----NFMAMAEPADFVHVY 390 (448)
Q Consensus 326 ~~~~p---~g~~l~s~~~d-----~~i~iwd~~~~~---~~~~~~~~~~~~v~~l~~sp~g----~~l~s~~~d~~v~vw 390 (448)
+.|+| ...+||.|+.+ +.+.||.....+ ..+..+.+|..+|+.++|.|+- ..||+|+.|| |+||
T Consensus 175 vsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~ 253 (361)
T KOG2445|consen 175 VSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIF 253 (361)
T ss_pred EeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEE
Confidence 99998 34689998876 479999876534 3456778999999999999963 5899999999 9999
Q ss_pred ECCCC--------------------ceeeeeecCcCceEEEEEccCCCeEEEEEecCCcc
Q 013184 391 DAKNG--------------------FEKEQEIDFFGEISGMTFSPDTEALFIGVWDRTYG 430 (448)
Q Consensus 391 d~~~~--------------------~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~~~ 430 (448)
.+... +.+..+.+|.++|+.+.|+-.|..|++.+.||+++
T Consensus 254 ~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VR 313 (361)
T KOG2445|consen 254 KVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVR 313 (361)
T ss_pred EEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceee
Confidence 98731 12344567999999999999999999999998865
No 126
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.87 E-value=3.3e-21 Score=169.49 Aligned_cols=199 Identities=18% Similarity=0.247 Sum_probs=164.1
Q ss_pred EEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCC------------c------eEEEEee-cCCCeeEEEEC
Q 013184 227 SRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMER------------F------QLSKHFS-FPWPVNHTSLS 287 (448)
Q Consensus 227 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~------------~------~~~~~~~-~~~~v~~~~~s 287 (448)
......|.+.+.+..+ +++|. ++++|+.|..|+|+|++. + -+++++- |..+|+++.|+
T Consensus 105 t~ylt~HK~~cR~aaf--s~DG~-lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FH 181 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAF--SPDGS-LVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFH 181 (430)
T ss_pred eEEEeecccceeeeee--CCCCc-EEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeec
Confidence 4445567777777766 89987 999999999999999872 1 1334444 88999999999
Q ss_pred CCCCEEEEEecCCcEEEEECCCCceeEeee--cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEE---EccC
Q 013184 288 PDGKLLVIVGDNPEGILVDSQTGKAIMPLC--GHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAV---LKGN 362 (448)
Q Consensus 288 p~~~~l~~~~~d~~i~i~d~~~~~~~~~l~--~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~---~~~~ 362 (448)
|....|++++.|++|+++|.......+.++ ....+|.++.|+|.|.+|+.|.+-.++++||+.+ .++... -..|
T Consensus 182 Pre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T-~QcfvsanPd~qh 260 (430)
T KOG0640|consen 182 PRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNT-YQCFVSANPDDQH 260 (430)
T ss_pred chhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccc-eeEeeecCccccc
Confidence 999999999999999999987644332222 2457899999999999999999999999999976 555433 3468
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeec-Cc-CceEEEEEccCCCeEEEEEecCCc
Q 013184 363 LGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEID-FF-GEISGMTFSPDTEALFIGVWDRTY 429 (448)
Q Consensus 363 ~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~-~~-~~v~~~~fspdg~~L~~~~~D~~~ 429 (448)
.+.|+++.+|+.|++-++|+.||.|+|||--+++++..+.. |. .+|.+..|+.+|+|+++++.|..+
T Consensus 261 t~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~v 329 (430)
T KOG0640|consen 261 TGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTV 329 (430)
T ss_pred ccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCccee
Confidence 89999999999999999999999999999999888877654 55 469999999999999999988653
No 127
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=5.2e-20 Score=162.13 Aligned_cols=229 Identities=12% Similarity=0.090 Sum_probs=180.2
Q ss_pred ceeeEEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCC
Q 013184 191 QTQVSTLAV--RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMER 268 (448)
Q Consensus 191 ~~~i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~ 268 (448)
...|++|.+ .++.|++++.||++++|++..... +....+.+++...++ .+ ...+++|+-||.|+.+|+.+
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l----~~~~~~~~plL~c~F--~d--~~~~~~G~~dg~vr~~Dln~ 84 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSL----KLKFKHGAPLLDCAF--AD--ESTIVTGGLDGQVRRYDLNT 84 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhh----hhheecCCceeeeec--cC--CceEEEeccCceEEEEEecC
Confidence 457899988 567777888999999999987753 233345555555555 33 23799999999999999999
Q ss_pred ceEEEEeecCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 013184 269 FQLSKHFSFPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWD 348 (448)
Q Consensus 269 ~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd 348 (448)
+.....-.|..+|.|+..++....+++|+.|+.|++||.+....+..+.. ...|+++... |+.|+.|+.+..+.+||
T Consensus 85 ~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v~--g~~LvVg~~~r~v~iyD 161 (323)
T KOG1036|consen 85 GNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDVS--GNRLVVGTSDRKVLIYD 161 (323)
T ss_pred CcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-CceEEEEecc--CCEEEEeecCceEEEEE
Confidence 98887778999999999999888999999999999999998655555543 4488888774 77899999999999999
Q ss_pred ccCCCcceEEEc-cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC----ceeeeeecCc---------CceEEEEEc
Q 013184 349 VRNLSKSVAVLK-GNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNG----FEKEQEIDFF---------GEISGMTFS 414 (448)
Q Consensus 349 ~~~~~~~~~~~~-~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~----~~~~~~~~~~---------~~v~~~~fs 414 (448)
+|+.....+.-. .-.-.++|+++-|++.=.++++-+|.|.+=.+... .....+..|. -+|++|+|+
T Consensus 162 LRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fh 241 (323)
T KOG1036|consen 162 LRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFH 241 (323)
T ss_pred cccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEec
Confidence 998665553322 23347899999999888889999999988666554 3334455554 379999999
Q ss_pred cCCCeEEEEEecCCcc
Q 013184 415 PDTEALFIGVWDRTYG 430 (448)
Q Consensus 415 pdg~~L~~~~~D~~~~ 430 (448)
|--..|++|+.||.+-
T Consensus 242 p~~~tfaTgGsDG~V~ 257 (323)
T KOG1036|consen 242 PIHGTFATGGSDGIVN 257 (323)
T ss_pred cccceEEecCCCceEE
Confidence 9999999999996543
No 128
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.87 E-value=7.5e-19 Score=163.85 Aligned_cols=261 Identities=14% Similarity=0.159 Sum_probs=193.9
Q ss_pred CeEEEecCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe-cCCEEEEEeCCCeEEEEEcCCCCc
Q 013184 145 HDVYLMSHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV-RDNLLIAGGFQGELICKYLDQPGV 223 (448)
Q Consensus 145 ~~v~~~~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~-~~~~lvsg~~dg~i~vw~~~~~~~ 223 (448)
+.+...+.+.+..|...++...+...+.+ ......|.|+.| .+.-+++|..+|.|.||+..+...
T Consensus 214 nliit~Gk~H~~Fw~~~~~~l~k~~~~fe--------------k~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~ 279 (626)
T KOG2106|consen 214 NLIITCGKGHLYFWTLRGGSLVKRQGIFE--------------KREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRI 279 (626)
T ss_pred cEEEEeCCceEEEEEccCCceEEEeeccc--------------cccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceE
Confidence 34555566667779877766555543321 112246999999 667799999999999999865543
Q ss_pred eeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCce---------------------------------
Q 013184 224 SFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQ--------------------------------- 270 (448)
Q Consensus 224 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~--------------------------------- 270 (448)
. .... .|++-+-+++. -.+| .|++|+.|..|..||-.-.+
T Consensus 280 ~--k~~~-aH~ggv~~L~~--lr~G--tllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL 352 (626)
T KOG2106|consen 280 S--KQVH-AHDGGVFSLCM--LRDG--TLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFIL 352 (626)
T ss_pred E--eEee-ecCCceEEEEE--ecCc--cEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEE
Confidence 3 2333 66666778877 4566 47779999999999832100
Q ss_pred --------EEEEeecCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCC
Q 013184 271 --------LSKHFSFPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDK 342 (448)
Q Consensus 271 --------~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~ 342 (448)
.+..+.|......++.+|...++++++.|+.+++|+ ..+++.+.. -.+++.|+.|+|.| .+|.|...|
T Consensus 353 ~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G 428 (626)
T KOG2106|consen 353 QGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATG 428 (626)
T ss_pred EeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEEeeccc
Confidence 001122566778899999999999999999999999 445544433 46788999999999 999999999
Q ss_pred cEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeee--cCcCceEEEEEccCCCeE
Q 013184 343 TCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEI--DFFGEISGMTFSPDTEAL 420 (448)
Q Consensus 343 ~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~--~~~~~v~~~~fspdg~~L 420 (448)
..-+.|..+ ...+..-+. ..++++++|+|+|.+||+|+.|+.|+||-+.......... -+..+|+.+.||+|+++|
T Consensus 429 ~w~V~d~e~-~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~ 506 (626)
T KOG2106|consen 429 RWFVLDTET-QDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFL 506 (626)
T ss_pred eEEEEeccc-ceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceE
Confidence 999999976 444444444 8899999999999999999999999999987655443322 244789999999999999
Q ss_pred EEEEecCCcceEEEE
Q 013184 421 FIGVWDRTYGSLLQY 435 (448)
Q Consensus 421 ~~~~~D~~~~~ll~~ 435 (448)
.+-+-| -.+|.|
T Consensus 507 ~~~S~d---~eiLyW 518 (626)
T KOG2106|consen 507 VSNSGD---YEILYW 518 (626)
T ss_pred EeccCc---eEEEEE
Confidence 988766 455665
No 129
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.87 E-value=2.4e-20 Score=168.12 Aligned_cols=232 Identities=15% Similarity=0.164 Sum_probs=173.3
Q ss_pred eeEEEEe-cCCEEEEEeCCCeEEEEEcCCC-------Cc------eeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCC
Q 013184 193 QVSTLAV-RDNLLIAGGFQGELICKYLDQP-------GV------SFCSRTTYDENAITNAVEIYNSPSGGIHFMASNND 258 (448)
Q Consensus 193 ~i~~l~~-~~~~lvsg~~dg~i~vw~~~~~-------~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d 258 (448)
+|..... +..++++-+..|.|.||++... +. .........|...-.+++| +|...-.|++|..-
T Consensus 156 Rvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdW--Sp~~~g~LlsGDc~ 233 (440)
T KOG0302|consen 156 RVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDW--SPIKTGRLLSGDCV 233 (440)
T ss_pred eeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeec--ccccccccccCccc
Confidence 3444444 6677888889999999998532 10 0112223344555556766 66433368899888
Q ss_pred CcEEEEecCCceEEE----EeecCCCeeEEEECC-CCCEEEEEecCCcEEEEECCCCc---eeEeeecCCCcEEEEEEcC
Q 013184 259 CGVRDFDMERFQLSK----HFSFPWPVNHTSLSP-DGKLLVIVGDNPEGILVDSQTGK---AIMPLCGHLDFSFASAWHP 330 (448)
Q Consensus 259 g~v~iwd~~~~~~~~----~~~~~~~v~~~~~sp-~~~~l~~~~~d~~i~i~d~~~~~---~~~~l~~h~~~v~~~~~~p 330 (448)
+.|++|...++.... ...|...|-.++||| ....|++|+.|+.|+|||++.+. ++. .+.|...|+.+.|+.
T Consensus 234 ~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~-~kAh~sDVNVISWnr 312 (440)
T KOG0302|consen 234 KGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS-TKAHNSDVNVISWNR 312 (440)
T ss_pred cceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeE-eeccCCceeeEEccC
Confidence 999999998876432 222889999999999 56689999999999999999883 343 378999999999999
Q ss_pred CCCEEEEEeCCCcEEEEEccC--CCcceEEEccCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCCce----------
Q 013184 331 DGRIFATGNQDKTCRVWDVRN--LSKSVAVLKGNLGAIRSIRFTSDG-NFMAMAEPADFVHVYDAKNGFE---------- 397 (448)
Q Consensus 331 ~g~~l~s~~~d~~i~iwd~~~--~~~~~~~~~~~~~~v~~l~~sp~g-~~l~s~~~d~~v~vwd~~~~~~---------- 397 (448)
.-.+||+|+.||+++|||+|+ .++++..++.|..+|+++.|+|.. ..|++++.|..|.|||+....-
T Consensus 313 ~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~ 392 (440)
T KOG0302|consen 313 REPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAE 392 (440)
T ss_pred CcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhcccccc
Confidence 888999999999999999996 347899999999999999999954 6788888999999999854221
Q ss_pred ------eeeeecCc--CceEEEEEccCC-CeEEEEEecC
Q 013184 398 ------KEQEIDFF--GEISGMTFSPDT-EALFIGVWDR 427 (448)
Q Consensus 398 ------~~~~~~~~--~~v~~~~fspdg-~~L~~~~~D~ 427 (448)
...+.-|. ..|..+.|++.- -+|++.+.||
T Consensus 393 ~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG 431 (440)
T KOG0302|consen 393 GLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG 431 (440)
T ss_pred chhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc
Confidence 11223343 468899999864 4666666665
No 130
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.86 E-value=2.6e-20 Score=163.39 Aligned_cols=197 Identities=22% Similarity=0.225 Sum_probs=153.7
Q ss_pred eecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCC-ceEEEE--eecCCCeeEEEECCCCCEEEEEecCCcEEEE
Q 013184 229 TTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMER-FQLSKH--FSFPWPVNHTSLSPDGKLLVIVGDNPEGILV 305 (448)
Q Consensus 229 ~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~-~~~~~~--~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~ 305 (448)
+.......+.++.| +|....+++++|.|++||+|+++. ++.+.. ..+.++|.+++|+.+|..+++|+.|+.+++|
T Consensus 22 v~~pP~DsIS~l~F--SP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~w 99 (347)
T KOG0647|consen 22 VPNPPEDSISALAF--SPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLW 99 (347)
T ss_pred cCCCcccchheeEe--ccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEE
Confidence 33444455667766 886665788999999999999986 454433 3389999999999999999999999999999
Q ss_pred ECCCCceeEeeecCCCcEEEEEEcCCCC--EEEEEeCCCcEEEEEccCCCcceEEEc-----------------------
Q 013184 306 DSQTGKAIMPLCGHLDFSFASAWHPDGR--IFATGNQDKTCRVWDVRNLSKSVAVLK----------------------- 360 (448)
Q Consensus 306 d~~~~~~~~~l~~h~~~v~~~~~~p~g~--~l~s~~~d~~i~iwd~~~~~~~~~~~~----------------------- 360 (448)
|+.+++ +.++..|.++|.++.|-+... .|+||+.|++|+.||.|. ..++.++.
T Consensus 100 DL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~-~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~ 177 (347)
T KOG0647|consen 100 DLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRS-SNPVATLQLPERVYAADVLYPMAVVATAERH 177 (347)
T ss_pred EccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCC-CCeeeeeeccceeeehhccCceeEEEecCCc
Confidence 999996 456778999999999998666 899999999999999986 33222211
Q ss_pred --------------cCC----CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC--ceeeeeecCc---------CceEEE
Q 013184 361 --------------GNL----GAIRSIRFTSDGNFMAMAEPADFVHVYDAKNG--FEKEQEIDFF---------GEISGM 411 (448)
Q Consensus 361 --------------~~~----~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~--~~~~~~~~~~---------~~v~~~ 411 (448)
.+. -.++|++..+++.-.|.|+-.|.+-|..+..+ +.-..+..|. -.|.+|
T Consensus 178 i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi 257 (347)
T KOG0647|consen 178 IAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSI 257 (347)
T ss_pred EEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecce
Confidence 011 14788888888877799999999999888776 3334444554 258899
Q ss_pred EEccCCCeEEEEEecCCc
Q 013184 412 TFSPDTEALFIGVWDRTY 429 (448)
Q Consensus 412 ~fspdg~~L~~~~~D~~~ 429 (448)
+|+|.-..|++++.||++
T Consensus 258 ~FhP~hgtlvTaGsDGtf 275 (347)
T KOG0647|consen 258 AFHPVHGTLVTAGSDGTF 275 (347)
T ss_pred EeecccceEEEecCCceE
Confidence 999998899999999653
No 131
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.86 E-value=2.4e-18 Score=162.46 Aligned_cols=254 Identities=13% Similarity=0.122 Sum_probs=175.0
Q ss_pred ccceeeeCCCCeEEEe--cCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEecCCEEEE-EeCCC
Q 013184 135 LRNLVWSTSKHDVYLM--SHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAVRDNLLIA-GGFQG 211 (448)
Q Consensus 135 ~r~l~~~~~~~~v~~~--~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~~~~~lvs-g~~dg 211 (448)
.+.+.+.+.+..+|++ .++.|++|+..+++....+ ..+..+ ...++..+++.+++ ++.++
T Consensus 33 ~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~--~~~~~~---------------~~~~~~~~g~~l~~~~~~~~ 95 (300)
T TIGR03866 33 PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTL--PSGPDP---------------ELFALHPNGKILYIANEDDN 95 (300)
T ss_pred CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEec--cCCCCc---------------cEEEECCCCCEEEEEcCCCC
Confidence 4556777777777665 3567999998765443322 211111 12233346776654 56689
Q ss_pred eEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCC-cEEEEecCCceEEEEeecCCCeeEEEECCCC
Q 013184 212 ELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDC-GVRDFDMERFQLSKHFSFPWPVNHTSLSPDG 290 (448)
Q Consensus 212 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg-~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~ 290 (448)
.|++|++.+.... ..+.. ...+..+.+ +|++. .+++++.++ .+.+||..+++..........+.+++|+|++
T Consensus 96 ~l~~~d~~~~~~~--~~~~~--~~~~~~~~~--~~dg~-~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg 168 (300)
T TIGR03866 96 LVTVIDIETRKVL--AEIPV--GVEPEGMAV--SPDGK-IVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADG 168 (300)
T ss_pred eEEEEECCCCeEE--eEeeC--CCCcceEEE--CCCCC-EEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCC
Confidence 9999999875432 12211 112334444 89887 566666554 5778899988877666655567889999999
Q ss_pred CEEEEEe-cCCcEEEEECCCCceeEeeecCC-----C--cEEEEEEcCCCCEEEEE-eCCCcEEEEEccCCCcceEEEcc
Q 013184 291 KLLVIVG-DNPEGILVDSQTGKAIMPLCGHL-----D--FSFASAWHPDGRIFATG-NQDKTCRVWDVRNLSKSVAVLKG 361 (448)
Q Consensus 291 ~~l~~~~-~d~~i~i~d~~~~~~~~~l~~h~-----~--~v~~~~~~p~g~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~ 361 (448)
+.+++++ .++.|.+||+.+++.+..+..+. . ....++|+|++++++++ +.++.+.+||+++ .+.+..+.
T Consensus 169 ~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~-~~~~~~~~- 246 (300)
T TIGR03866 169 KELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKT-YEVLDYLL- 246 (300)
T ss_pred CEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCC-CcEEEEEE-
Confidence 9886554 58999999999998877664321 1 23468899999985554 4566899999975 55554443
Q ss_pred CCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCceeeeeecCcCceEEEEEcc
Q 013184 362 NLGAIRSIRFTSDGNFMAMAE-PADFVHVYDAKNGFEKEQEIDFFGEISGMTFSP 415 (448)
Q Consensus 362 ~~~~v~~l~~sp~g~~l~s~~-~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fsp 415 (448)
+...+.+++|+|+|++|++++ .++.|+|||+.+++.+..+.. ...+++++|+|
T Consensus 247 ~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~ 300 (300)
T TIGR03866 247 VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKV-GRLPWGVVVRP 300 (300)
T ss_pred eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEc-ccccceeEeCC
Confidence 345789999999999998874 589999999999988877764 46679999876
No 132
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=6.1e-20 Score=161.94 Aligned_cols=240 Identities=18% Similarity=0.233 Sum_probs=180.1
Q ss_pred eEEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceE
Q 013184 194 VSTLAV--RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQL 271 (448)
Q Consensus 194 i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~ 271 (448)
-.|+.| .|.+|++|+.+|.|.+||+.+.+. .++...|-.++.+++| +++|. .|+++|.|..|.+||+..|.+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~i---ar~lsaH~~pi~sl~W--S~dgr-~LltsS~D~si~lwDl~~gs~ 99 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRI---ARMLSAHVRPITSLCW--SRDGR-KLLTSSRDWSIKLWDLLKGSP 99 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccch---hhhhhccccceeEEEe--cCCCC-EeeeecCCceeEEEeccCCCc
Confidence 456666 899999999999999999998774 4555667777788877 88886 899999999999999999999
Q ss_pred EEEeecCCCeeEEEECCCC-CEEEEEecCCcEEEEECCCCceeEeeec----CCC-cEEEEEEcCCCCEEEEEeCCCcEE
Q 013184 272 SKHFSFPWPVNHTSLSPDG-KLLVIVGDNPEGILVDSQTGKAIMPLCG----HLD-FSFASAWHPDGRIFATGNQDKTCR 345 (448)
Q Consensus 272 ~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~i~i~d~~~~~~~~~l~~----h~~-~v~~~~~~p~g~~l~s~~~d~~i~ 345 (448)
++.+.++.+|..+.|+|.. +..++.-.+..-.+.+...++.. .|.. ... ...+..|++.|++|++|...|.+.
T Consensus 100 l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~-~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkll 178 (405)
T KOG1273|consen 100 LKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS-VLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLL 178 (405)
T ss_pred eeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCcee-eccCCCccccccccccccccCCCCEEEEecCcceEE
Confidence 9999999999999999943 34443333334445554442211 1111 111 112336889999999999999999
Q ss_pred EEEccCCCcceEEEccCC-CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC----c--ee---eeeec--CcCceEEEEE
Q 013184 346 VWDVRNLSKSVAVLKGNL-GAIRSIRFTSDGNFMAMAEPADFVHVYDAKNG----F--EK---EQEID--FFGEISGMTF 413 (448)
Q Consensus 346 iwd~~~~~~~~~~~~~~~-~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~----~--~~---~~~~~--~~~~v~~~~f 413 (448)
+++..+ .+++..++-.. ..|..+.++..|++|+.-+.|..|+.|+++.- + .+ ..+.+ ..-.=.+++|
T Consensus 179 v~~a~t-~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccf 257 (405)
T KOG1273|consen 179 VYDAET-LECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCF 257 (405)
T ss_pred EEecch-heeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheee
Confidence 999987 68888777665 78999999999999999999999999998631 1 11 11111 1123457899
Q ss_pred ccCCCeEEEE--------EecCCcceEEEEecccce
Q 013184 414 SPDTEALFIG--------VWDRTYGSLLQYNRCRNY 441 (448)
Q Consensus 414 spdg~~L~~~--------~~D~~~~~ll~~~~~~~~ 441 (448)
|.+|.|++.| .|..++|.|++...+..+
T Consensus 258 s~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kg 293 (405)
T KOG1273|consen 258 SGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKG 293 (405)
T ss_pred cCCccEEEeccccceeEEEEecCCcceeeeecCCch
Confidence 9999999987 577788888887776663
No 133
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=2.8e-20 Score=171.68 Aligned_cols=241 Identities=15% Similarity=0.218 Sum_probs=189.8
Q ss_pred eeeEEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCc
Q 013184 192 TQVSTLAV--RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERF 269 (448)
Q Consensus 192 ~~i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~ 269 (448)
..|+++.| ...+|++++.||.+++|.++.........+... .-++.+.+| .|+|...+++++....++.||+++.
T Consensus 214 ~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~-~fPi~~a~f--~p~G~~~i~~s~rrky~ysyDle~a 290 (514)
T KOG2055|consen 214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLE-KFPIQKAEF--APNGHSVIFTSGRRKYLYSYDLETA 290 (514)
T ss_pred CCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeec-cCccceeee--cCCCceEEEecccceEEEEeecccc
Confidence 36899999 668999999999999999987664433333222 233445555 7898878999999999999999998
Q ss_pred eEEEEee----cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEE
Q 013184 270 QLSKHFS----FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCR 345 (448)
Q Consensus 270 ~~~~~~~----~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~ 345 (448)
+..+.-. ....+....++|++++|+..|..|.|.+.-..+++.+.+++ -.+.|..++|+.+|+.|++++.+|.|.
T Consensus 291 k~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~ 369 (514)
T KOG2055|consen 291 KVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVY 369 (514)
T ss_pred ccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEE
Confidence 8665443 12356788899999999999999999999999999998887 567899999999999999999999999
Q ss_pred EEEccCCCcceEEEccCCC-CeEEEEEcCCCCEEEEEeCCCeEEEEECCCC------ceeeeeecCcCceEEEEEccCCC
Q 013184 346 VWDVRNLSKSVAVLKGNLG-AIRSIRFTSDGNFMAMAEPADFVHVYDAKNG------FEKEQEIDFFGEISGMTFSPDTE 418 (448)
Q Consensus 346 iwd~~~~~~~~~~~~~~~~-~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~------~~~~~~~~~~~~v~~~~fspdg~ 418 (448)
+||++. ..+++.+....+ .-++++.|++|.|||+|+..|.|.|||..+. +++..+......|++|+|+||++
T Consensus 370 v~nl~~-~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~q 448 (514)
T KOG2055|consen 370 VWNLRQ-NSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQ 448 (514)
T ss_pred EEecCC-cceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchh
Confidence 999987 577777764322 3367888899999999999999999996542 33444555667899999999999
Q ss_pred eEEEEEecCC-cceEEEEec
Q 013184 419 ALFIGVWDRT-YGSLLQYNR 437 (448)
Q Consensus 419 ~L~~~~~D~~-~~~ll~~~~ 437 (448)
.|++++.-.. .-+|+++..
T Consensus 449 iLAiaS~~~knalrLVHvPS 468 (514)
T KOG2055|consen 449 ILAIASRVKKNALRLVHVPS 468 (514)
T ss_pred hhhhhhhccccceEEEeccc
Confidence 9998865322 234555443
No 134
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.86 E-value=1.1e-19 Score=178.61 Aligned_cols=231 Identities=18% Similarity=0.165 Sum_probs=190.0
Q ss_pred ceeeEEEEe-------cCCEEEEEeCCCeEEEEEcCCCCc-eeEEEee--cCCCCceeeEEEEeCCCCCeeEEEEeCCCc
Q 013184 191 QTQVSTLAV-------RDNLLIAGGFQGELICKYLDQPGV-SFCSRTT--YDENAITNAVEIYNSPSGGIHFMASNNDCG 260 (448)
Q Consensus 191 ~~~i~~l~~-------~~~~lvsg~~dg~i~vw~~~~~~~-~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~ 260 (448)
-.+|..+++ ..+.+++.-.+..++.|++..... ....... ......+.++++ ++.|+ ..+.|+..|.
T Consensus 395 ~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~v--s~CGN-F~~IG~S~G~ 471 (910)
T KOG1539|consen 395 LPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCV--SFCGN-FVFIGYSKGT 471 (910)
T ss_pred CCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEE--eccCc-eEEEeccCCe
Confidence 346888888 335666666777899999987653 1111111 112233445554 78876 7888889999
Q ss_pred EEEEecCCceEEEEe----ecCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEE
Q 013184 261 VRDFDMERFQLSKHF----SFPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFA 336 (448)
Q Consensus 261 v~iwd~~~~~~~~~~----~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~ 336 (448)
|-+|++.+|-....+ .|..+|..++...-++.+++++.+|.+.+||..+...+..+. -...+.++..+.....++
T Consensus 472 Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~-l~~~~~~iv~hr~s~l~a 550 (910)
T KOG1539|consen 472 IDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLR-LGSSITGIVYHRVSDLLA 550 (910)
T ss_pred EEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeec-cCCCcceeeeeehhhhhh
Confidence 999999999988888 399999999999999999999999999999999888777776 345567788888888999
Q ss_pred EEeCCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccC
Q 013184 337 TGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPD 416 (448)
Q Consensus 337 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspd 416 (448)
.+..|-.|+++|+.+ .+.++.+.+|.+.|+.++|||||++|++++.|++|++||+.++..+-.+. ...++.+++|||+
T Consensus 551 ~~~ddf~I~vvD~~t-~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~-vd~~~~sls~SPn 628 (910)
T KOG1539|consen 551 IALDDFSIRVVDVVT-RKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSPN 628 (910)
T ss_pred hhcCceeEEEEEchh-hhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe-cCCcceeeEECCC
Confidence 999999999999976 78899999999999999999999999999999999999999998876544 4678999999999
Q ss_pred CCeEEEEEecC
Q 013184 417 TEALFIGVWDR 427 (448)
Q Consensus 417 g~~L~~~~~D~ 427 (448)
|.+||+...|.
T Consensus 629 gD~LAT~Hvd~ 639 (910)
T KOG1539|consen 629 GDFLATVHVDQ 639 (910)
T ss_pred CCEEEEEEecC
Confidence 99999998875
No 135
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.86 E-value=1.5e-19 Score=174.61 Aligned_cols=231 Identities=18% Similarity=0.209 Sum_probs=177.0
Q ss_pred EEEe--cCCEEEEEeCCCeEEEEEcCCCCce-eEEEeecCCCCceeeEEEEe----------CCCCCeeEEEEeCCCcEE
Q 013184 196 TLAV--RDNLLIAGGFQGELICKYLDQPGVS-FCSRTTYDENAITNAVEIYN----------SPSGGIHFMASNNDCGVR 262 (448)
Q Consensus 196 ~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~-~~~~~~~~~~~~~~~v~~~~----------~~~~~~~l~s~s~dg~v~ 262 (448)
++.| ....|.+.-.|..|.|||++..... .+..... |...++.+..+. -|.+ -|++++.|++||
T Consensus 329 A~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~ly-HS~ciW~Ve~~p~nv~~~~~aclp~~--cF~TCSsD~TIR 405 (1080)
T KOG1408|consen 329 ACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLY-HSACIWDVENLPCNVHSPTAACLPRG--CFTTCSSDGTIR 405 (1080)
T ss_pred EEEecCCCceEEEEEcCceEEEEeccccccccceeeeee-ccceeeeeccccccccCcccccCCcc--ceeEecCCCcEE
Confidence 4455 4578888899999999999876632 2333333 333344443322 1333 499999999999
Q ss_pred EEecCCc---eEE-----------------------------------EEeecCCCeeEEEECCCCCEEEEEecCCcEEE
Q 013184 263 DFDMERF---QLS-----------------------------------KHFSFPWPVNHTSLSPDGKLLVIVGDNPEGIL 304 (448)
Q Consensus 263 iwd~~~~---~~~-----------------------------------~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i 304 (448)
+|+++.+ +.. ........+.+++.+|+|++||+|..-|.+++
T Consensus 406 lW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrV 485 (1080)
T KOG1408|consen 406 LWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRV 485 (1080)
T ss_pred EeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEE
Confidence 9998752 111 00112345899999999999999999999999
Q ss_pred EECCCCceeEeeecCCCcEEEEEEcC---CCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEEEE----------
Q 013184 305 VDSQTGKAIMPLCGHLDFSFASAWHP---DGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRF---------- 371 (448)
Q Consensus 305 ~d~~~~~~~~~l~~h~~~v~~~~~~p---~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~---------- 371 (448)
|++..-+....+..|...|.|+.++- ..++||+++.|.-|+|||+...-.+++++.+|.+.|++++|
T Consensus 486 y~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~Mi 565 (1080)
T KOG1408|consen 486 YDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMI 565 (1080)
T ss_pred EEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEE
Confidence 99999999999999999999999985 34689999999999999997655566666666666555554
Q ss_pred ---------------------------------------cCCCCEEEEEeCCCeEEEEECCCCceeeeeec---CcCceE
Q 013184 372 ---------------------------------------TSDGNFMAMAEPADFVHVYDAKNGFEKEQEID---FFGEIS 409 (448)
Q Consensus 372 ---------------------------------------sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~---~~~~v~ 409 (448)
.|..+++++++.|..|+||++.+|+..+.+.+ |.|...
T Consensus 566 scGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lI 645 (1080)
T KOG1408|consen 566 SCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLI 645 (1080)
T ss_pred eccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceE
Confidence 44445668899999999999999999888775 667788
Q ss_pred EEEEccCCCeEEEEEecCCc
Q 013184 410 GMTFSPDTEALFIGVWDRTY 429 (448)
Q Consensus 410 ~~~fspdg~~L~~~~~D~~~ 429 (448)
.+...|.|-||++...|.++
T Consensus 646 Kv~lDPSgiY~atScsdktl 665 (1080)
T KOG1408|consen 646 KVILDPSGIYLATSCSDKTL 665 (1080)
T ss_pred EEEECCCccEEEEeecCCce
Confidence 99999999999999999774
No 136
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=3.5e-20 Score=171.36 Aligned_cols=235 Identities=16% Similarity=0.192 Sum_probs=179.9
Q ss_pred eeeeCCCCeEEEec--CCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCCCeE
Q 013184 138 LVWSTSKHDVYLMS--HFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQGEL 213 (448)
Q Consensus 138 l~~~~~~~~v~~~~--~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~dg~i 213 (448)
++.+...+..++++ .+.+.+|.+.++..-.++ .+|..+ |+++.| ++.+|++||.||.|
T Consensus 86 al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~--~aHYQ~----------------ITcL~fs~dgs~iiTgskDg~V 147 (476)
T KOG0646|consen 86 ALASSNLGYFLLAGTISGNLYLWELSSGILLNVL--SAHYQS----------------ITCLKFSDDGSHIITGSKDGAV 147 (476)
T ss_pred eeecCCCceEEEeecccCcEEEEEeccccHHHHH--Hhhccc----------------eeEEEEeCCCcEEEecCCCccE
Confidence 34444444444444 677999999887655544 667764 999999 89999999999999
Q ss_pred EEEEcCCC------CceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEeecCCCeeEEEEC
Q 013184 214 ICKYLDQP------GVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFSFPWPVNHTSLS 287 (448)
Q Consensus 214 ~vw~~~~~------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~s 287 (448)
.+|.+..- ..........+|.-.+..+.+-..+.. .+++++|.|.++++||+..+.++..+.++.++.+++..
T Consensus 148 ~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~-~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lD 226 (476)
T KOG0646|consen 148 LVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTN-ARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALD 226 (476)
T ss_pred EEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCcc-ceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEc
Confidence 99987421 112223445566666667766444333 38999999999999999999999999999999999999
Q ss_pred CCCCEEEEEecCCcEEEEECCCC----------------ceeEeeecCCC--cEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 013184 288 PDGKLLVIVGDNPEGILVDSQTG----------------KAIMPLCGHLD--FSFASAWHPDGRIFATGNQDKTCRVWDV 349 (448)
Q Consensus 288 p~~~~l~~~~~d~~i~i~d~~~~----------------~~~~~l~~h~~--~v~~~~~~p~g~~l~s~~~d~~i~iwd~ 349 (448)
|-...+++|+.+|.|.+.++..- ..+..+.||.+ .|+|++.+-||.+|++|+.||.|+|||+
T Consensus 227 pae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi 306 (476)
T KOG0646|consen 227 PAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDI 306 (476)
T ss_pred ccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEec
Confidence 99999999999999998876432 24556778988 9999999999999999999999999999
Q ss_pred cCCCcceEEEccCCCCeEEEEEcCCCCEEEEE-eCCCeEEEEEC
Q 013184 350 RNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMA-EPADFVHVYDA 392 (448)
Q Consensus 350 ~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~-~~d~~v~vwd~ 392 (448)
.. .++++++....++|+.+.+.|--+-...+ ...-.+-.|++
T Consensus 307 ~S-~Q~iRtl~~~kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~l 349 (476)
T KOG0646|consen 307 YS-KQCIRTLQTSKGPVTNLQINPLERGIILFEHKQPSLPNPHL 349 (476)
T ss_pred ch-HHHHHHHhhhccccceeEeeccccceecccccCccCCchHh
Confidence 76 78888888778899999997644333332 22234444443
No 137
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.85 E-value=8.9e-20 Score=164.44 Aligned_cols=194 Identities=15% Similarity=0.186 Sum_probs=150.7
Q ss_pred EEEEe---cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCc--
Q 013184 195 STLAV---RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERF-- 269 (448)
Q Consensus 195 ~~l~~---~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~-- 269 (448)
.+|.+ ....|++|..-+.|++|...++....-......|...+-.+++ +|.....|++||.||+|+|||++.+
T Consensus 215 y~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqW--SptE~~vfaScS~DgsIrIWDiRs~~~ 292 (440)
T KOG0302|consen 215 YGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQW--SPTEDGVFASCSCDGSIRIWDIRSGPK 292 (440)
T ss_pred eeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhcc--CCccCceEEeeecCceEEEEEecCCCc
Confidence 45555 4466899999999999999887765544444457777777777 8888889999999999999999987
Q ss_pred -eEEEEeecCCCeeEEEECCCCCEEEEEecCCcEEEEECCC---CceeEeeecCCCcEEEEEEcCC-CCEEEEEeCCCcE
Q 013184 270 -QLSKHFSFPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQT---GKAIMPLCGHLDFSFASAWHPD-GRIFATGNQDKTC 344 (448)
Q Consensus 270 -~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~---~~~~~~l~~h~~~v~~~~~~p~-g~~l~s~~~d~~i 344 (448)
.++..-.|.+.|+.++|+..-.+||+|+++|+++|||++. ++++..++-|..+|+++.|+|. ...|++++.|.+|
T Consensus 293 ~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Qi 372 (440)
T KOG0302|consen 293 KAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQI 372 (440)
T ss_pred cceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcE
Confidence 3444544999999999999777999999999999999874 6788999999999999999994 5688899999999
Q ss_pred EEEEccCCCc---------------ceEEEccCC--CCeEEEEEcCCC-CEEEEEeCCCeEEEEE
Q 013184 345 RVWDVRNLSK---------------SVAVLKGNL--GAIRSIRFTSDG-NFMAMAEPADFVHVYD 391 (448)
Q Consensus 345 ~iwd~~~~~~---------------~~~~~~~~~--~~v~~l~~sp~g-~~l~s~~~d~~v~vwd 391 (448)
.|||+..... +.+-+.-|. ..+..+.|+++- .+|++.+.+| +.||-
T Consensus 373 tiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 373 TIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred EEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence 9999853110 111222343 357788998854 4777777787 45553
No 138
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=4.1e-21 Score=194.86 Aligned_cols=237 Identities=14% Similarity=0.192 Sum_probs=192.1
Q ss_pred eeEEEEe--cC----CEEEEEeCCCeEEEEEcCCC---CceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEE
Q 013184 193 QVSTLAV--RD----NLLIAGGFQGELICKYLDQP---GVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRD 263 (448)
Q Consensus 193 ~i~~l~~--~~----~~lvsg~~dg~i~vw~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~i 263 (448)
+...|++ .+ .+|+.|..||.|.+|+.... ...........|.+.+..++| ++...++|++|+++|.|.|
T Consensus 66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDf--N~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDF--NPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeec--cccCCceeeccCCCCcEEE
Confidence 5667777 22 36999999999999998762 222223344567777888887 8888889999999999999
Q ss_pred EecCCceEEEEe---ecCCCeeEEEECC-CCCEEEEEecCCcEEEEECCCCceeEeeecCCC--cEEEEEEcCCCC-EEE
Q 013184 264 FDMERFQLSKHF---SFPWPVNHTSLSP-DGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLD--FSFASAWHPDGR-IFA 336 (448)
Q Consensus 264 wd~~~~~~~~~~---~~~~~v~~~~~sp-~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~--~v~~~~~~p~g~-~l~ 336 (448)
||+..-+.-.+. .....|.+++|+. ....|++++.+|.+.|||++..+.+-.+..|.. .+..++|||+.. .|+
T Consensus 144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~ 223 (1049)
T KOG0307|consen 144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLL 223 (1049)
T ss_pred eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeee
Confidence 999874433333 2567899999987 456788889999999999999988877765544 477899999764 566
Q ss_pred EEeCCC---cEEEEEccCCCcceEEEccCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEE
Q 013184 337 TGNQDK---TCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDG-NFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMT 412 (448)
Q Consensus 337 s~~~d~---~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g-~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~ 412 (448)
+++.|. .|.+||+|....+++++++|...|.++.|++.+ ++|++++.|+.|.+|+..+++.+..+......+..+.
T Consensus 224 ~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~ 303 (1049)
T KOG0307|consen 224 VASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQ 303 (1049)
T ss_pred eecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeee
Confidence 666553 699999999889999999999999999999977 8999999999999999999999998888778899999
Q ss_pred EccCCC-eEEEEEecCCcce
Q 013184 413 FSPDTE-ALFIGVWDRTYGS 431 (448)
Q Consensus 413 fspdg~-~L~~~~~D~~~~~ 431 (448)
|+|... .+++++.||++..
T Consensus 304 w~pr~P~~~A~asfdgkI~I 323 (1049)
T KOG0307|consen 304 WCPRNPSVMAAASFDGKISI 323 (1049)
T ss_pred ecCCCcchhhhheeccceee
Confidence 999766 7778888987653
No 139
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.84 E-value=2.4e-19 Score=165.37 Aligned_cols=231 Identities=16% Similarity=0.169 Sum_probs=177.5
Q ss_pred eeeEEEEe----cCCEEEEEeCCCeEEEEEcCCCCcee-EEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEec
Q 013184 192 TQVSTLAV----RDNLLIAGGFQGELICKYLDQPGVSF-CSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDM 266 (448)
Q Consensus 192 ~~i~~l~~----~~~~lvsg~~dg~i~vw~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~ 266 (448)
.+|+++++ .-+++++|..-|+|-+|++.+.+... .......|.+.+.++.+ +|.+...++++|.||+|++-|+
T Consensus 187 ~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F--~P~n~s~i~ssSyDGtiR~~D~ 264 (498)
T KOG4328|consen 187 RRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKF--SPANTSQIYSSSYDGTIRLQDF 264 (498)
T ss_pred cceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEe--cCCChhheeeeccCceeeeeee
Confidence 47999999 34789999999999999996443221 23344567777888876 8888779999999999999999
Q ss_pred CCceEEEEee---cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCce-eEeeecCCCcEEEEEEcC-CCCEEEEEeCC
Q 013184 267 ERFQLSKHFS---FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKA-IMPLCGHLDFSFASAWHP-DGRIFATGNQD 341 (448)
Q Consensus 267 ~~~~~~~~~~---~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~-~~~l~~h~~~v~~~~~~p-~g~~l~s~~~d 341 (448)
++......+. -...+..+.|+.+...++++..=|...+||.+++.. ...+.-|...|.+++++| ...+|||++.|
T Consensus 265 ~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D 344 (498)
T KOG4328|consen 265 EGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLD 344 (498)
T ss_pred cchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccC
Confidence 8765433333 234466778888777888888777999999998765 556777999999999999 55689999999
Q ss_pred CcEEEEEccCCCc---ceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC---CCceeeeeecCcC------ceE
Q 013184 342 KTCRVWDVRNLSK---SVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAK---NGFEKEQEIDFFG------EIS 409 (448)
Q Consensus 342 ~~i~iwd~~~~~~---~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~---~~~~~~~~~~~~~------~v~ 409 (448)
++++|||+|+... ++.....|.-.|.++.|||.|-.|++.+.|+.|+|||.. ...+....+.|.. .+.
T Consensus 345 ~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~f 424 (498)
T KOG4328|consen 345 QTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPF 424 (498)
T ss_pred cceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccch
Confidence 9999999987432 234455699999999999998889999999999999974 2223333333332 245
Q ss_pred EEEEccCCCeEEEEE
Q 013184 410 GMTFSPDTEALFIGV 424 (448)
Q Consensus 410 ~~~fspdg~~L~~~~ 424 (448)
...|.|+..++++|-
T Consensus 425 KA~W~P~~~li~vg~ 439 (498)
T KOG4328|consen 425 KAAWDPDYNLIVVGR 439 (498)
T ss_pred hheeCCCccEEEEec
Confidence 678999999999884
No 140
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=5.5e-18 Score=163.35 Aligned_cols=264 Identities=14% Similarity=0.133 Sum_probs=204.4
Q ss_pred eeCCCCeEEEe-cCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe-cCCEEEEEeCCCeEEEEE
Q 013184 140 WSTSKHDVYLM-SHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV-RDNLLIAGGFQGELICKY 217 (448)
Q Consensus 140 ~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~-~~~~lvsg~~dg~i~vw~ 217 (448)
.....+.+.++ .++.|-+|++...- -...-+.|+.. ..|.+|++ .+..|++.+.+|.|.-||
T Consensus 33 ~s~kS~~lAvsRt~g~IEiwN~~~~w-~~~~vi~g~~d---------------rsIE~L~W~e~~RLFS~g~sg~i~EwD 96 (691)
T KOG2048|consen 33 YSHKSNQLAVSRTDGNIEIWNLSNNW-FLEPVIHGPED---------------RSIESLAWAEGGRLFSSGLSGSITEWD 96 (691)
T ss_pred EeccCCceeeeccCCcEEEEccCCCc-eeeEEEecCCC---------------CceeeEEEccCCeEEeecCCceEEEEe
Confidence 33444555555 57889999986532 22223344443 35899999 699999999999999999
Q ss_pred cCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee---cCCCeeEEEECCCCCEEE
Q 013184 218 LDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS---FPWPVNHTSLSPDGKLLV 294 (448)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~---~~~~v~~~~~sp~~~~l~ 294 (448)
+.+...... .....+.+.++++ +|.+. .++.|+.||.+..++...+++..... ..+.|.+++|+|++..++
T Consensus 97 l~~lk~~~~---~d~~gg~IWsiai--~p~~~-~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~ 170 (691)
T KOG2048|consen 97 LHTLKQKYN---IDSNGGAIWSIAI--NPENT-ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIA 170 (691)
T ss_pred cccCceeEE---ecCCCcceeEEEe--CCccc-eEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEE
Confidence 988765432 2344566788888 77765 78899999988888888877665443 568899999999999999
Q ss_pred EEecCCcEEEEECCCCceeEeee----c----CCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCe
Q 013184 295 IVGDNPEGILVDSQTGKAIMPLC----G----HLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAI 366 (448)
Q Consensus 295 ~~~~d~~i~i~d~~~~~~~~~l~----~----h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v 366 (448)
.|+.||.|++||..++..++... + ...-|+++.+-.+ ..|++|...|+|.+||... +..++.+..|.+.|
T Consensus 171 ~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~-gTLiqS~~~h~adV 248 (691)
T KOG2048|consen 171 GGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIF-GTLIQSHSCHDADV 248 (691)
T ss_pred ecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccC-cchhhhhhhhhcce
Confidence 99999999999999998776222 1 2234667777655 4799999999999999977 88899999999999
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCce----eeeeecCcCceEEEEEccCCCeEEEEEecCCc
Q 013184 367 RSIRFTSDGNFMAMAEPADFVHVYDAKNGFE----KEQEIDFFGEISGMTFSPDTEALFIGVWDRTY 429 (448)
Q Consensus 367 ~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~----~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~~ 429 (448)
.+++..+++.++++|+.|+.|.-|...+... ......|...|.+++..++ .|++|+.|.++
T Consensus 249 l~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l 313 (691)
T KOG2048|consen 249 LALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTL 313 (691)
T ss_pred eEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEE
Confidence 9999999999999999999998888766543 1223346778999999877 88999888764
No 141
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.83 E-value=1.2e-18 Score=162.23 Aligned_cols=236 Identities=14% Similarity=0.191 Sum_probs=178.8
Q ss_pred eeEEEEecC-CEEEEEe--CCCeEEEEEcCCCC--ceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecC
Q 013184 193 QVSTLAVRD-NLLIAGG--FQGELICKYLDQPG--VSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDME 267 (448)
Q Consensus 193 ~i~~l~~~~-~~lvsg~--~dg~i~vw~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~ 267 (448)
.+.++.+.. +.|++++ .|..+++|.-..+. +.............+.+. .-..++++|+..+.|+|||++
T Consensus 36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~------s~S~y~~sgG~~~~Vkiwdl~ 109 (673)
T KOG4378|consen 36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACA------SQSLYEISGGQSGCVKIWDLR 109 (673)
T ss_pred cceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhh------hcceeeeccCcCceeeehhhH
Confidence 378888843 4466655 45577777655442 222222222221222222 224689999999999999999
Q ss_pred CceEEEEee-cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecC-CCcEEEEEEcCCCC-EEEEEeCCCcE
Q 013184 268 RFQLSKHFS-FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGH-LDFSFASAWHPDGR-IFATGNQDKTC 344 (448)
Q Consensus 268 ~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h-~~~v~~~~~~p~g~-~l~s~~~d~~i 344 (448)
...+.+.++ |...|+++.++-...+||+++..|.|.|..+.++.....|... ...|.-+.|+|..+ +|.+++.+|.|
T Consensus 110 ~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~V 189 (673)
T KOG4378|consen 110 AKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAV 189 (673)
T ss_pred HHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeE
Confidence 766666666 9999999999999999999999999999999999887777644 34456889999776 56778999999
Q ss_pred EEEEccCCCcceEEEccCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEE
Q 013184 345 RVWDVRNLSKSVAVLKGNLGAIRSIRFTSDG-NFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIG 423 (448)
Q Consensus 345 ~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g-~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~ 423 (448)
.+||+............|..+...++|+|.. ..|++-+.|..|.+||+.+......+ ....+.+.++|+++|.+|++|
T Consensus 190 tlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l-~y~~Plstvaf~~~G~~L~aG 268 (673)
T KOG4378|consen 190 TLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRL-TYSHPLSTVAFSECGTYLCAG 268 (673)
T ss_pred EEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccccccee-eecCCcceeeecCCceEEEee
Confidence 9999976555666778899999999999966 57788899999999999875544433 345688999999999999999
Q ss_pred EecCCcceEEEEecc
Q 013184 424 VWDRTYGSLLQYNRC 438 (448)
Q Consensus 424 ~~D~~~~~ll~~~~~ 438 (448)
... |++++|+-.
T Consensus 269 ~s~---G~~i~YD~R 280 (673)
T KOG4378|consen 269 NSK---GELIAYDMR 280 (673)
T ss_pred cCC---ceEEEEecc
Confidence 876 677777644
No 142
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.82 E-value=8.1e-19 Score=163.26 Aligned_cols=210 Identities=17% Similarity=0.215 Sum_probs=173.6
Q ss_pred cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEeecC-
Q 013184 200 RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFSFP- 278 (448)
Q Consensus 200 ~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~- 278 (448)
...++++||..|.|+|||+.. +.+.+...+|...+.++.. +..+ .+|++++..|.|.|..+.+++....|.++
T Consensus 90 ~S~y~~sgG~~~~Vkiwdl~~---kl~hr~lkdh~stvt~v~Y--N~~D-eyiAsvs~gGdiiih~~~t~~~tt~f~~~s 163 (673)
T KOG4378|consen 90 QSLYEISGGQSGCVKIWDLRA---KLIHRFLKDHQSTVTYVDY--NNTD-EYIASVSDGGDIIIHGTKTKQKTTTFTIDS 163 (673)
T ss_pred cceeeeccCcCceeeehhhHH---HHHhhhccCCcceeEEEEe--cCCc-ceeEEeccCCcEEEEecccCccccceecCC
Confidence 558999999999999999984 3446666677777777766 4444 38999999999999999999988888854
Q ss_pred -CCeeEEEECCCCC-EEEEEecCCcEEEEECCCCceeEee-ecCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEEccCCCc
Q 013184 279 -WPVNHTSLSPDGK-LLVIVGDNPEGILVDSQTGKAIMPL-CGHLDFSFASAWHP-DGRIFATGNQDKTCRVWDVRNLSK 354 (448)
Q Consensus 279 -~~v~~~~~sp~~~-~l~~~~~d~~i~i~d~~~~~~~~~l-~~h~~~v~~~~~~p-~g~~l~s~~~d~~i~iwd~~~~~~ 354 (448)
..|.-+.++|..+ +|.+++++|.|.+||+....++..+ ..|..+...++|+| +..+|++.+.|+.|.+||++. ..
T Consensus 164 gqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s-~~ 242 (673)
T KOG4378|consen 164 GQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRS-QA 242 (673)
T ss_pred CCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccc-cc
Confidence 4466899999655 5667899999999999887776654 56999999999999 567899999999999999985 55
Q ss_pred ceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCce-eeeeecCcCceEEEEEccCC
Q 013184 355 SVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFE-KEQEIDFFGEISGMTFSPDT 417 (448)
Q Consensus 355 ~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~-~~~~~~~~~~v~~~~fspdg 417 (448)
....+. ...+...++|+++|.+|++|...|.|..||++..+. +..+..|...|++++|-|.-
T Consensus 243 s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 243 STDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred ccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 555554 456889999999999999999999999999997654 45677899999999998864
No 143
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.82 E-value=3.4e-17 Score=152.89 Aligned_cols=225 Identities=21% Similarity=0.202 Sum_probs=173.1
Q ss_pred eeEEEEe---cCCEEEEEeCCCeEEEEEcCCCCceeEEEee-cCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCC
Q 013184 193 QVSTLAV---RDNLLIAGGFQGELICKYLDQPGVSFCSRTT-YDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMER 268 (448)
Q Consensus 193 ~i~~l~~---~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~ 268 (448)
.|....| +.+++++++ .|.+..|++.........-+. ......+.+++| .++|. +++|..+|.|.||+..+
T Consensus 202 ~v~~a~FHPtd~nliit~G-k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F--~engd--viTgDS~G~i~Iw~~~~ 276 (626)
T KOG2106|consen 202 VVFLATFHPTDPNLIITCG-KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTF--LENGD--VITGDSGGNILIWSKGT 276 (626)
T ss_pred eEEEEEeccCCCcEEEEeC-CceEEEEEccCCceEEEeeccccccceEEEEEEE--cCCCC--EEeecCCceEEEEeCCC
Confidence 3455555 667777776 578999999887754333333 333445555554 88885 89999999999999988
Q ss_pred ceEEEEee-cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCc------------------------------------
Q 013184 269 FQLSKHFS-FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGK------------------------------------ 311 (448)
Q Consensus 269 ~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~------------------------------------ 311 (448)
.+..+... |++.|.+++.-.+|.+|- |+.|..|..||-.-.+
T Consensus 277 ~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt 355 (626)
T KOG2106|consen 277 NRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGT 355 (626)
T ss_pred ceEEeEeeecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEee
Confidence 88766555 999999999999997766 9999999999842110
Q ss_pred ----eeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 013184 312 ----AIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFV 387 (448)
Q Consensus 312 ----~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v 387 (448)
......+|.+....++.+|+...++|+++|+.+++|+ . .++.-... -..++.|+.|+|.| .||.|...|..
T Consensus 356 ~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~--~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w 430 (626)
T KOG2106|consen 356 LENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-D--HKLEWTKI-IEDPAECADFHPSG-VVAVGTATGRW 430 (626)
T ss_pred ecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc-C--CceeEEEE-ecCceeEeeccCcc-eEEEeeccceE
Confidence 0112346888889999999999999999999999999 2 34433322 35678999999999 99999999999
Q ss_pred EEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEecCCc
Q 013184 388 HVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDRTY 429 (448)
Q Consensus 388 ~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~~ 429 (448)
.|.|+.+...+ ++.....+++.++|+|+|.+||+|+.|+.+
T Consensus 431 ~V~d~e~~~lv-~~~~d~~~ls~v~ysp~G~~lAvgs~d~~i 471 (626)
T KOG2106|consen 431 FVLDTETQDLV-TIHTDNEQLSVVRYSPDGAFLAVGSHDNHI 471 (626)
T ss_pred EEEecccceeE-EEEecCCceEEEEEcCCCCEEEEecCCCeE
Confidence 99999885444 444347899999999999999999999764
No 144
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.82 E-value=3.5e-18 Score=164.94 Aligned_cols=273 Identities=17% Similarity=0.137 Sum_probs=191.2
Q ss_pred eeeCCCCeEEEecCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCC---EEEEEeCCCeE
Q 013184 139 VWSTSKHDVYLMSHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDN---LLIAGGFQGEL 213 (448)
Q Consensus 139 ~~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~---~lvsg~~dg~i 213 (448)
.....+..+.|+....|.+|++... ..+..+.||..+ |+|+.+ ... .+++|+.||.|
T Consensus 20 ~sw~~~~~vafGa~~~Iav~dp~k~--~i~t~l~GH~a~----------------VnC~~~l~~s~~~a~~vsG~sD~~v 81 (764)
T KOG1063|consen 20 SSWGPGGLVAFGAGPAIAVADPEKI--LIVTTLDGHVAR----------------VNCVHWLPTSEIVAEMVSGDSDGRV 81 (764)
T ss_pred ccccccceEEecCCceEEEeCcccc--eeEEeccCCccc----------------eEEEEEcccccccceEEEccCCCcE
Confidence 3334556677888888999998553 456678899885 788877 222 79999999999
Q ss_pred EEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCce--EEEEeec---CCCeeEEEECC
Q 013184 214 ICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQ--LSKHFSF---PWPVNHTSLSP 288 (448)
Q Consensus 214 ~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~--~~~~~~~---~~~v~~~~~sp 288 (448)
++|.+...... +.....++... ++++.. ......+.+.|+.+++|+.+..+ +...+.+ ..-..|+++.|
T Consensus 82 ~lW~l~~~~~~-~i~~~~g~~~~--~~cv~a---~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~ 155 (764)
T KOG1063|consen 82 ILWKLRDEYLI-KIYTIQGHCKE--CVCVVA---RSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALK 155 (764)
T ss_pred EEEEEeehheE-EEEeecCccee--EEEEEe---eeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhc
Confidence 99999844433 33333334333 344421 11122223689999999996555 3333331 22345667777
Q ss_pred -CCC-EEEEEecCCcEEEEECCCC--ceeEeeecCCCcEEEEEEcCCCC---EEEEEeCCCcEEEEEccCCC--------
Q 013184 289 -DGK-LLVIVGDNPEGILVDSQTG--KAIMPLCGHLDFSFASAWHPDGR---IFATGNQDKTCRVWDVRNLS-------- 353 (448)
Q Consensus 289 -~~~-~l~~~~~d~~i~i~d~~~~--~~~~~l~~h~~~v~~~~~~p~g~---~l~s~~~d~~i~iwd~~~~~-------- 353 (448)
.+. +++.|+.+..|.++.-.+. +.+..+.||.+.|.+++|..-+. +||++++|..||||.+.-..
T Consensus 156 ~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e 235 (764)
T KOG1063|consen 156 NNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNERE 235 (764)
T ss_pred cCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccc
Confidence 333 3445566777777765443 45778999999999999987544 89999999999999875322
Q ss_pred ------------cce----------EEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC----------------
Q 013184 354 ------------KSV----------AVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNG---------------- 395 (448)
Q Consensus 354 ------------~~~----------~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~---------------- 395 (448)
... ..+.+|...|+++.|+|.+..|++++.|.++.+|.-.+.
T Consensus 236 ~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~ 315 (764)
T KOG1063|consen 236 DSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGS 315 (764)
T ss_pred cccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeeccccc
Confidence 111 123489999999999999999999999999999954321
Q ss_pred ------------------------------------ceeeeeecCcCceEEEEEccCCCeEEEEEecCCcceEEEE
Q 013184 396 ------------------------------------FEKEQEIDFFGEISGMTFSPDTEALFIGVWDRTYGSLLQY 435 (448)
Q Consensus 396 ------------------------------------~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~~~~ll~~ 435 (448)
.....+.+|...|.+++|+|.|++|++.+.|.|.+-+..+
T Consensus 316 a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~w 391 (764)
T KOG1063|consen 316 AGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARW 391 (764)
T ss_pred ccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeeccc
Confidence 0011234688899999999999999999999998877666
No 145
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.82 E-value=4.6e-19 Score=155.05 Aligned_cols=197 Identities=13% Similarity=0.231 Sum_probs=161.1
Q ss_pred ecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCce-------EE---E--E--e--ecCCCeeEEEECC-CCCE
Q 013184 230 TYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQ-------LS---K--H--F--SFPWPVNHTSLSP-DGKL 292 (448)
Q Consensus 230 ~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~-------~~---~--~--~--~~~~~v~~~~~sp-~~~~ 292 (448)
...|.+.++++.+ .+...+++++|+.||.|.+||++... +. . . . .|...|..+.|-| |...
T Consensus 39 ~r~HgGsvNsL~i--d~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGm 116 (397)
T KOG4283|consen 39 VRPHGGSVNSLQI--DLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGM 116 (397)
T ss_pred eccCCCccceeee--ccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCce
Confidence 3356677889988 67777799999999999999997532 11 1 0 1 1677899999999 7778
Q ss_pred EEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCC---CCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEE
Q 013184 293 LVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPD---GRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSI 369 (448)
Q Consensus 293 l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~---g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l 369 (448)
+.+++-|.++++||..+-+....|+ -.+.|++-+|+|- .-+||+|..+-.|++.|+.. +..-+.+.+|.+.|.++
T Consensus 117 FtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~S-Gs~sH~LsGHr~~vlaV 194 (397)
T KOG4283|consen 117 FTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIAS-GSFSHTLSGHRDGVLAV 194 (397)
T ss_pred eecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccC-CcceeeeccccCceEEE
Confidence 9999999999999999998887776 5678888899983 34789999999999999987 88999999999999999
Q ss_pred EEcCCCC-EEEEEeCCCeEEEEECCCC-cee--------------eeeecCcCceEEEEEccCCCeEEEEEecCCcc
Q 013184 370 RFTSDGN-FMAMAEPADFVHVYDAKNG-FEK--------------EQEIDFFGEISGMTFSPDTEALFIGVWDRTYG 430 (448)
Q Consensus 370 ~~sp~g~-~l~s~~~d~~v~vwd~~~~-~~~--------------~~~~~~~~~v~~~~fspdg~~L~~~~~D~~~~ 430 (448)
.|+|... .|++|+.||.|++||++.- .+. ..-..|.+.|.+++|+.+|.+|++++.|..++
T Consensus 195 ~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r 271 (397)
T KOG4283|consen 195 EWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIR 271 (397)
T ss_pred EeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceE
Confidence 9999876 5678999999999999753 111 12345788999999999999999998886543
No 146
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=1.8e-18 Score=159.15 Aligned_cols=201 Identities=17% Similarity=0.166 Sum_probs=160.3
Q ss_pred eeEEEEe---cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCC-
Q 013184 193 QVSTLAV---RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMER- 268 (448)
Q Consensus 193 ~i~~l~~---~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~- 268 (448)
.|.+|++ ..++||+||.|.+|++||+.+.+.. .+..+|+..++++.| +|.....|++|+.|++|.+.|++.
T Consensus 245 avl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~---~s~~~~~k~Vq~l~w--h~~~p~~LLsGs~D~~V~l~D~R~~ 319 (463)
T KOG0270|consen 245 AVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPK---SSITHHGKKVQTLEW--HPYEPSVLLSGSYDGTVALKDCRDP 319 (463)
T ss_pred HHHHHHhccccceeEEecCCCceEEEEEcCCCCcc---eehhhcCCceeEEEe--cCCCceEEEeccccceEEeeeccCc
Confidence 4556666 5689999999999999999988753 445578888999988 777777999999999999999984
Q ss_pred ceEEEEeecCCCeeEEEECC-CCCEEEEEecCCcEEEEECCCC-ceeEeeecCCCcEEEEEEcCC-CCEEEEEeCCCcEE
Q 013184 269 FQLSKHFSFPWPVNHTSLSP-DGKLLVIVGDNPEGILVDSQTG-KAIMPLCGHLDFSFASAWHPD-GRIFATGNQDKTCR 345 (448)
Q Consensus 269 ~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~i~i~d~~~~-~~~~~l~~h~~~v~~~~~~p~-g~~l~s~~~d~~i~ 345 (448)
...-...++.+.|-.++|.| ....++++.+||.++-+|+|.. +++.+++.|.++|.++++++. ..+++|++.|+.|+
T Consensus 320 ~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vk 399 (463)
T KOG0270|consen 320 SNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVK 399 (463)
T ss_pred cccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEE
Confidence 33444556788999999999 4556777889999999999875 899999999999999999984 46899999999999
Q ss_pred EEEccCCC-cceEEEccCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcee
Q 013184 346 VWDVRNLS-KSVAVLKGNLGAIRSIRFTSDG-NFMAMAEPADFVHVYDAKNGFEK 398 (448)
Q Consensus 346 iwd~~~~~-~~~~~~~~~~~~v~~l~~sp~g-~~l~s~~~d~~v~vwd~~~~~~~ 398 (448)
+|++.... +.+..-....+...|.++.|+- -+||.|+..+.++|||+.+...+
T Consensus 400 lw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 400 LWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred EEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 99996522 2222222234557778888865 46777888888999999876544
No 147
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.82 E-value=4e-18 Score=155.30 Aligned_cols=244 Identities=19% Similarity=0.214 Sum_probs=175.3
Q ss_pred eeeEEEEe---cCCEEEEEeCCCeEEEEEcCCCCc------eeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEE
Q 013184 192 TQVSTLAV---RDNLLIAGGFQGELICKYLDQPGV------SFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVR 262 (448)
Q Consensus 192 ~~i~~l~~---~~~~lvsg~~dg~i~vw~~~~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~ 262 (448)
.+|.++.+ ..+.|++||.|..|++|.+..... .........|...++++.+ +|+|. ++++|+.+|.|.
T Consensus 14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf--~p~ge-lLASg~D~g~v~ 90 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRF--SPDGE-LLASGGDGGEVF 90 (434)
T ss_pred CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEE--cCCcC-eeeecCCCceEE
Confidence 35788877 334899999999999999875431 1122334556666788877 89987 999999999999
Q ss_pred EEecC--------C--------ceEEEEee-cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEE
Q 013184 263 DFDME--------R--------FQLSKHFS-FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFA 325 (448)
Q Consensus 263 iwd~~--------~--------~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~ 325 (448)
+|-.. + ....+... |...|..++|+|++..+++++.|..+++||+..|+....+..|..++..
T Consensus 91 lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqg 170 (434)
T KOG1009|consen 91 LWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQG 170 (434)
T ss_pred EEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccce
Confidence 99765 2 12223333 7888999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEc--------cCC--C-------------CeEEEEEcCCCCEE----
Q 013184 326 SAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLK--------GNL--G-------------AIRSIRFTSDGNFM---- 378 (448)
Q Consensus 326 ~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~--------~~~--~-------------~v~~l~~sp~g~~l---- 378 (448)
++|.|-++++++-+.|...+.+.+.. .+.+.... .+. + -.+.++|+|+|.+|
T Consensus 171 vawDpl~qyv~s~s~dr~~~~~~~~~-~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPa 249 (434)
T KOG1009|consen 171 VAWDPLNQYVASKSSDRHPEGFSAKL-KQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPA 249 (434)
T ss_pred eecchhhhhhhhhccCcccceeeeee-eeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEccc
Confidence 99999999999988888666665532 11111000 000 0 12334555555444
Q ss_pred ------------------------------------------------------------------EEEeCCCeEEEEEC
Q 013184 379 ------------------------------------------------------------------AMAEPADFVHVYDA 392 (448)
Q Consensus 379 ------------------------------------------------------------------~s~~~d~~v~vwd~ 392 (448)
|.|+. +.|+|||.
T Consensus 250 g~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~-~svyvydt 328 (434)
T KOG1009|consen 250 GLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATK-NSVYVYDT 328 (434)
T ss_pred ceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeec-ceEEEecc
Confidence 33333 35777777
Q ss_pred CCCceeeeee-cCcCceEEEEEccCCCeEEEEEecCCcceEEEEecccce
Q 013184 393 KNGFEKEQEI-DFFGEISGMTFSPDTEALFIGVWDRTYGSLLQYNRCRNY 441 (448)
Q Consensus 393 ~~~~~~~~~~-~~~~~v~~~~fspdg~~L~~~~~D~~~~~ll~~~~~~~~ 441 (448)
++...+.... -|...|+.++|++||.+|++.+.||- -.++.+.....+
T Consensus 329 q~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGy-CS~vtfe~~elg 377 (434)
T KOG1009|consen 329 QTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGF-CSLVTFEPWELG 377 (434)
T ss_pred ccccceEEEeeeeeeeecceeecCCCcEEEEeccCCc-eEEEEEcchhcc
Confidence 7665554443 38889999999999999999999974 455555554444
No 148
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.81 E-value=2.9e-18 Score=152.23 Aligned_cols=227 Identities=17% Similarity=0.196 Sum_probs=174.2
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee----
Q 013184 201 DNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS---- 276 (448)
Q Consensus 201 ~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~---- 276 (448)
+-+||+||.-|.|+|.|+...... .-..+|+..++.+.+ .|....+++++|.|..||+|++++..++..+.
T Consensus 105 ~p~la~~G~~GvIrVid~~~~~~~---~~~~ghG~sINeik~--~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~eg 179 (385)
T KOG1034|consen 105 NPFLAAGGYLGVIRVIDVVSGQCS---KNYRGHGGSINEIKF--HPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEG 179 (385)
T ss_pred CeeEEeecceeEEEEEecchhhhc---cceeccCccchhhhc--CCCCCcEEEEecCCceEEEEeccCCeEEEEeccccc
Confidence 568999999999999999876643 233356667788877 78887899999999999999999999999886
Q ss_pred cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCcee-------------------------E---eeecCCCcEEEEEE
Q 013184 277 FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAI-------------------------M---PLCGHLDFSFASAW 328 (448)
Q Consensus 277 ~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~-------------------------~---~l~~h~~~v~~~~~ 328 (448)
|...|.++.|+++|..|++++.|..+++|++...+.. . +-.-|..+|-|+.|
T Consensus 180 HrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw 259 (385)
T KOG1034|consen 180 HRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRW 259 (385)
T ss_pred ccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHH
Confidence 8899999999999999999999999999999743210 0 11237777878887
Q ss_pred cCCCCEEEEEeCCCcEEEEEccCCCc-------------ceEEEccCCCCeEEEEE--cCCCCEEEEEeCCCeEEEEECC
Q 013184 329 HPDGRIFATGNQDKTCRVWDVRNLSK-------------SVAVLKGNLGAIRSIRF--TSDGNFMAMAEPADFVHVYDAK 393 (448)
Q Consensus 329 ~p~g~~l~s~~~d~~i~iwd~~~~~~-------------~~~~~~~~~~~v~~l~~--sp~g~~l~s~~~d~~v~vwd~~ 393 (448)
- |.++++=+-++.|..|-.-...+ .+..+......|.-+.| .|-+++||.|...|.|.+||+.
T Consensus 260 ~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~ 337 (385)
T KOG1034|consen 260 F--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLD 337 (385)
T ss_pred H--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECC
Confidence 5 68899999999999998722121 22334444455655555 5668999999999999999998
Q ss_pred CCceeee--eec--CcCceEEEEEccCCCeEEEEEecCCcceEEEEec
Q 013184 394 NGFEKEQ--EID--FFGEISGMTFSPDTEALFIGVWDRTYGSLLQYNR 437 (448)
Q Consensus 394 ~~~~~~~--~~~--~~~~v~~~~fspdg~~L~~~~~D~~~~~ll~~~~ 437 (448)
....... +.- ....|...+||.||..|+....|+++ +.|++
T Consensus 338 ~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~V---wrwdr 382 (385)
T KOG1034|consen 338 NNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTV---WRWDR 382 (385)
T ss_pred CCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcE---EEEEe
Confidence 8665321 111 23569999999999999999988654 44444
No 149
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.80 E-value=2.7e-18 Score=164.37 Aligned_cols=253 Identities=18% Similarity=0.260 Sum_probs=179.6
Q ss_pred CCCCcccccc-cceeeeCCCCeEEEe-cCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe---c
Q 013184 126 VKSTILHFQL-RNLVWSTSKHDVYLM-SHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV---R 200 (448)
Q Consensus 126 ~~~~~~hfq~-r~l~~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~---~ 200 (448)
++-.+.|+.. -.+.|++.+..+..+ ++.+++.|++.+.+..-..-.-||... |.++++ +
T Consensus 93 lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~S----------------vkS~cf~~~n 156 (720)
T KOG0321|consen 93 LKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGS----------------VKSECFMPTN 156 (720)
T ss_pred hcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccc----------------cchhhhccCC
Confidence 4444566643 567899966655555 567799999987766555445566653 566666 8
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCc----eeEEEe---------------------ecCCCCceeeEEEEeCCCCCeeEEEE
Q 013184 201 DNLLIAGGFQGELICKYLDQPGV----SFCSRT---------------------TYDENAITNAVEIYNSPSGGIHFMAS 255 (448)
Q Consensus 201 ~~~lvsg~~dg~i~vw~~~~~~~----~~~~~~---------------------~~~~~~~~~~v~~~~~~~~~~~l~s~ 255 (448)
...|++|+.||.|.|||+..... .++..+ ..+.+.+...|.+....+.. .|+++
T Consensus 157 ~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~-tlaSa 235 (720)
T KOG0321|consen 157 PAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDES-TLASA 235 (720)
T ss_pred CcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccc-eeeec
Confidence 89999999999999999865431 011111 11222333434455556655 77877
Q ss_pred eC-CCcEEEEecCCceEEEEe------e---c---CCCeeEEEECCCCCEEEEEecCCcEEEEECCCCc--eeEeeecCC
Q 013184 256 NN-DCGVRDFDMERFQLSKHF------S---F---PWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGK--AIMPLCGHL 320 (448)
Q Consensus 256 s~-dg~v~iwd~~~~~~~~~~------~---~---~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~--~~~~l~~h~ 320 (448)
+. |+.|+|||+++....... . + ...+.++.....|.+|++.+.|+.|+.|++.+-. ++..+.++.
T Consensus 236 ga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~ 315 (720)
T KOG0321|consen 236 GAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKL 315 (720)
T ss_pred cCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcc
Confidence 77 999999999875433221 1 2 2346777777788999888889999999997643 344455544
Q ss_pred CcEE--EEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCC
Q 013184 321 DFSF--ASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDG-NFMAMAEPADFVHVYDAKNG 395 (448)
Q Consensus 321 ~~v~--~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g-~~l~s~~~d~~v~vwd~~~~ 395 (448)
..-+ .-..+|++.++++|+.|....+|.+.+.......+.+|.-.|++++|.|.. .-+++++.|..++||++..+
T Consensus 316 ~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 316 NSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred cceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 3322 235789999999999999999999998888889999999999999998743 34556699999999999664
No 150
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.80 E-value=2.8e-18 Score=161.10 Aligned_cols=260 Identities=16% Similarity=0.253 Sum_probs=188.7
Q ss_pred eeeeCCCCeEEEecCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEecCCEEEEEeCCCeEEEEE
Q 013184 138 LVWSTSKHDVYLMSHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAVRDNLLIAGGFQGELICKY 217 (448)
Q Consensus 138 l~~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~~~~~lvsg~~dg~i~vw~ 217 (448)
+.|.+....+|.+.|..+.+|+..+....+++++.....|...|++....+- .-....|+.++.||.+.+.+
T Consensus 20 v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~--------g~~~d~~~i~s~DGkf~il~ 91 (737)
T KOG1524|consen 20 VDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGG--------GKGSDTLLICSNDGRFVILN 91 (737)
T ss_pred ecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCC--------CCCcceEEEEcCCceEEEec
Confidence 4566666656666777888888888778888877665555544443221100 00346788999999988765
Q ss_pred cCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee-cCCCeeEEEECCCCCEEEEE
Q 013184 218 LDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS-FPWPVNHTSLSPDGKLLVIV 296 (448)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~ 296 (448)
-.. .+ .+....|.+.+.+-.| +|+|. -|++++.||.|++|.-. |.+..++. ...+|.|++|.|+...++.+
T Consensus 92 k~~-rV---E~sv~AH~~A~~~gRW--~~dGt-gLlt~GEDG~iKiWSrs-GMLRStl~Q~~~~v~c~~W~p~S~~vl~c 163 (737)
T KOG1524|consen 92 KSA-RV---ERSISAHAAAISSGRW--SPDGA-GLLTAGEDGVIKIWSRS-GMLRSTVVQNEESIRCARWAPNSNSIVFC 163 (737)
T ss_pred ccc-hh---hhhhhhhhhhhhhccc--CCCCc-eeeeecCCceEEEEecc-chHHHHHhhcCceeEEEEECCCCCceEEe
Confidence 321 11 1222344454445555 88887 78999999999999964 44444433 77889999999988877665
Q ss_pred ecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCC
Q 013184 297 GDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGN 376 (448)
Q Consensus 297 ~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~ 376 (448)
..+ .+.|=-+.....+-.++.|.+-|.++.|+|...++++|+.|-..+|||.. +..+..-..|.-+|++++|.|+ +
T Consensus 164 ~g~-h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~--G~~Lf~S~~~ey~ITSva~npd-~ 239 (737)
T KOG1524|consen 164 QGG-HISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ--GANLFTSAAEEYAITSVAFNPE-K 239 (737)
T ss_pred cCC-eEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc--CcccccCChhccceeeeeeccc-c
Confidence 443 67776666666677889999999999999999999999999999999985 7888888889999999999999 5
Q ss_pred EEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEecCCc
Q 013184 377 FMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDRTY 429 (448)
Q Consensus 377 ~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~~ 429 (448)
.++.++.. +++ ......|.|..++|||||..+++|...|.+
T Consensus 240 ~~~v~S~n-t~R-----------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v 280 (737)
T KOG1524|consen 240 DYLLWSYN-TAR-----------FSSPRVGSIFNLSWSADGTQATCGTSTGQL 280 (737)
T ss_pred ceeeeeee-eee-----------ecCCCccceEEEEEcCCCceeeccccCceE
Confidence 55555543 343 122346889999999999999999876543
No 151
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.80 E-value=2.2e-17 Score=144.29 Aligned_cols=231 Identities=16% Similarity=0.176 Sum_probs=167.6
Q ss_pred eeEEEEe---cCCEEEEEeCC-------CeEEEEEcCCCCce-------eEEEeecCCCCceeeEEEEeCCCCCeeEEEE
Q 013184 193 QVSTLAV---RDNLLIAGGFQ-------GELICKYLDQPGVS-------FCSRTTYDENAITNAVEIYNSPSGGIHFMAS 255 (448)
Q Consensus 193 ~i~~l~~---~~~~lvsg~~d-------g~i~vw~~~~~~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 255 (448)
.|+.++. +..+|+++..+ -.+.||.+..+... ....+...+-+.++++.| .|++. .+++-
T Consensus 65 Evw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew--~Pns~-klasm 141 (370)
T KOG1007|consen 65 EVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEW--EPNSD-KLASM 141 (370)
T ss_pred ceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEE--cCCCC-eeEEe
Confidence 4555555 66677666442 24578988654322 011122222334566655 88776 44444
Q ss_pred eCCCcEEEEecCCceE-EEEee------cCCCeeEEEECC--CCCEEEEEecCCcEEEEECCCCceeEeee-cCCCcEEE
Q 013184 256 NNDCGVRDFDMERFQL-SKHFS------FPWPVNHTSLSP--DGKLLVIVGDNPEGILVDSQTGKAIMPLC-GHLDFSFA 325 (448)
Q Consensus 256 s~dg~v~iwd~~~~~~-~~~~~------~~~~v~~~~~sp--~~~~l~~~~~d~~i~i~d~~~~~~~~~l~-~h~~~v~~ 325 (448)
. |..|.+|++..... +..+. +....++-+|+| +|..+++.+ ++++..||+++.+....+. +|...|..
T Consensus 142 ~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrd 219 (370)
T KOG1007|consen 142 D-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRD 219 (370)
T ss_pred c-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccchhhhcchhhhhcceeee
Confidence 3 88999999987554 33322 345677888999 888887765 5689999999988776664 68889999
Q ss_pred EEEcCCCC-EEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCCc-------
Q 013184 326 SAWHPDGR-IFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDG-NFMAMAEPADFVHVYDAKNGF------- 396 (448)
Q Consensus 326 ~~~~p~g~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g-~~l~s~~~d~~v~vwd~~~~~------- 396 (448)
+.|+|+-+ +|++|+.||.|||||.|+.+.++..+.+|...|.+++|+|.. ++|++++.|..|.+|...+-.
T Consensus 220 lDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~ 299 (370)
T KOG1007|consen 220 LDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEF 299 (370)
T ss_pred ccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecccccccccccc
Confidence 99999876 788999999999999999899999999999999999999954 788899999999999754311
Q ss_pred ----------------------eeeeeecCcCceEEEEEccCCCeEE-EEEecCC
Q 013184 397 ----------------------EKEQEIDFFGEISGMTFSPDTEALF-IGVWDRT 428 (448)
Q Consensus 397 ----------------------~~~~~~~~~~~v~~~~fspdg~~L~-~~~~D~~ 428 (448)
.+.++..|...|.+++||.-..+++ +-++||.
T Consensus 300 ~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGR 354 (370)
T KOG1007|consen 300 EDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGR 354 (370)
T ss_pred ccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCce
Confidence 1224446888999999998666555 5588854
No 152
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.79 E-value=1.8e-17 Score=160.19 Aligned_cols=276 Identities=17% Similarity=0.220 Sum_probs=201.3
Q ss_pred eeeeCCCCeEEEe-cCCeEEEEecCCCc--eeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCCCe
Q 013184 138 LVWSTSKHDVYLM-SHFSIVHWSSLSSK--RTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQGE 212 (448)
Q Consensus 138 l~~~~~~~~v~~~-~~~~v~~w~~~~~~--~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~dg~ 212 (448)
+.|.+..-.++.+ .|.++++|-+.+.. -..++.+.+ +. | ........-+ +++.+++-+..|.
T Consensus 273 v~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe-~g------g------~a~GF~g~lw~~n~~~ii~~g~~Gg 339 (764)
T KOG1063|consen 273 VWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGE-VG------G------SAGGFWGGLWSPNSNVIIAHGRTGG 339 (764)
T ss_pred EEEccchhhheecccCcceEEEecCCccceEEEEEEeec-cc------c------cccceeeEEEcCCCCEEEEecccCc
Confidence 4566777666665 57889999975542 334444431 11 0 0012344444 7788999999999
Q ss_pred EEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEE-----EEeecCCCeeEEEEC
Q 013184 213 LICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLS-----KHFSFPWPVNHTSLS 287 (448)
Q Consensus 213 i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~-----~~~~~~~~v~~~~~s 287 (448)
.++|....+..-.......+|-..+..+.| .|.|. +|++++.|.+-|+|-.-..+.. +-..|...++|+++-
T Consensus 340 ~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W--~psGe-flLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~v 416 (764)
T KOG1063|consen 340 FHLWKTKDKTFWTQEPVISGHVDGVKDVDW--DPSGE-FLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFV 416 (764)
T ss_pred EEEEeccCccceeeccccccccccceeeee--cCCCC-EEEEeccccceeeecccccccceeeecccccccccceeeehc
Confidence 999993333222223344556666667766 89988 8999999999999976522211 112278889999998
Q ss_pred CCCCEEEEEecCCcEEEEECCC-------------------------------------------Cc-------------
Q 013184 288 PDGKLLVIVGDNPEGILVDSQT-------------------------------------------GK------------- 311 (448)
Q Consensus 288 p~~~~l~~~~~d~~i~i~d~~~-------------------------------------------~~------------- 311 (448)
+....+++|.+...+++++... |.
T Consensus 417 n~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~ 496 (764)
T KOG1063|consen 417 NEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAA 496 (764)
T ss_pred cCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccC
Confidence 8666777777777888887620 00
Q ss_pred --------------------eeEeeecCCCcEEEEEEcCCCCEEEEEeCCC-----cEEEEEccCCCcceEEEccCCCCe
Q 013184 312 --------------------AIMPLCGHLDFSFASAWHPDGRIFATGNQDK-----TCRVWDVRNLSKSVAVLKGNLGAI 366 (448)
Q Consensus 312 --------------------~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~v 366 (448)
.++.+.||...|++++.+|+|+++|+++... .|++|+..+ -..+..+.+|.-.|
T Consensus 497 p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~-W~~~~~L~~HsLTV 575 (764)
T KOG1063|consen 497 PCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTAN-WLQVQELEGHSLTV 575 (764)
T ss_pred chhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccc-hhhhheecccceEE
Confidence 1234558999999999999999999998653 499999977 56677999999999
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCcee----eeeecCcCceEEEEEccCCCeEEEEEecCCcc
Q 013184 367 RSIRFTSDGNFMAMAEPADFVHVYDAKNGFEK----EQEIDFFGEISGMTFSPDTEALFIGVWDRTYG 430 (448)
Q Consensus 367 ~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~----~~~~~~~~~v~~~~fspdg~~L~~~~~D~~~~ 430 (448)
+.++|||||+||++.+.|.++.+|........ .....|..-|+++.|+|++.++++++-|.++.
T Consensus 576 T~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~Vk 643 (764)
T KOG1063|consen 576 TRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVK 643 (764)
T ss_pred EEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEE
Confidence 99999999999999999999999997654322 23567888999999999999999999996654
No 153
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.79 E-value=2.1e-17 Score=152.66 Aligned_cols=253 Identities=14% Similarity=0.153 Sum_probs=178.6
Q ss_pred CCeEEEEecC--CCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe---cCCEEEEEeCCCeEEEEEcCCCCceeE
Q 013184 152 HFSIVHWSSL--SSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV---RDNLLIAGGFQGELICKYLDQPGVSFC 226 (448)
Q Consensus 152 ~~~v~~w~~~--~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~---~~~~lvsg~~dg~i~vw~~~~~~~~~~ 226 (448)
.+.|-+||+. ......+.-+.+|..| |++|.| +...+++.+.||+|++-|++..-....
T Consensus 209 ~G~VG~Wn~~~~~~d~d~v~~f~~hs~~----------------Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v 272 (498)
T KOG4328|consen 209 GGQVGLWNFGTQEKDKDGVYLFTPHSGP----------------VSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEV 272 (498)
T ss_pred CCcEEEEecCCCCCccCceEEeccCCcc----------------ccceEecCCChhheeeeccCceeeeeeecchhhHHH
Confidence 3679999984 2333445555566554 888888 668899999999999999987543222
Q ss_pred EEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceE-EEEee-cCCCeeEEEECC-CCCEEEEEecCCcEE
Q 013184 227 SRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQL-SKHFS-FPWPVNHTSLSP-DGKLLVIVGDNPEGI 303 (448)
Q Consensus 227 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~-~~~~~-~~~~v~~~~~sp-~~~~l~~~~~d~~i~ 303 (448)
.... .........++ +.... .++.+.+=|.+.+||+++..- ...+. |...|.+++++| ...+||+++.|++++
T Consensus 273 ~s~~-~d~~~fs~~d~--~~e~~-~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~k 348 (498)
T KOG4328|consen 273 LSLD-TDNIWFSSLDF--SAESR-SVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAK 348 (498)
T ss_pred hhcC-ccceeeeeccc--cCCCc-cEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCccee
Confidence 2211 12222233333 33333 566666667999999987654 33444 777999999999 667899999999999
Q ss_pred EEECCCCce----eEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcc---CCCcceEEEccCCC------CeEEEE
Q 013184 304 LVDSQTGKA----IMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVR---NLSKSVAVLKGNLG------AIRSIR 370 (448)
Q Consensus 304 i~d~~~~~~----~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~---~~~~~~~~~~~~~~------~v~~l~ 370 (448)
|||++.-.. +.....|...|.+..|||.|..|+|.++|..|||||.. ..-.+...+. |.. ......
T Consensus 349 IWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~ 427 (498)
T KOG4328|consen 349 IWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNRTGRWLTPFKAA 427 (498)
T ss_pred eeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee-ccCcccccccchhhe
Confidence 999975322 23334699999999999988889999999999999984 2123333333 221 234578
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCc-CceE-EEEEccCCCeEEEEEe
Q 013184 371 FTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFF-GEIS-GMTFSPDTEALFIGVW 425 (448)
Q Consensus 371 ~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~-~~v~-~~~fspdg~~L~~~~~ 425 (448)
|.|+..++++|-.-..|-|||-..++.+..+.+.. ..|. -.+|+|-+..+++|+.
T Consensus 428 W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~ 484 (498)
T KOG4328|consen 428 WDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGN 484 (498)
T ss_pred eCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCC
Confidence 99999999999988899999987776666654422 2333 3579999887877763
No 154
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=7.7e-18 Score=148.76 Aligned_cols=191 Identities=18% Similarity=0.170 Sum_probs=150.1
Q ss_pred eEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee-cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeee
Q 013184 239 AVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS-FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLC 317 (448)
Q Consensus 239 ~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~ 317 (448)
+.++.|++.|. +|++|..+|.|.|||+.+..+.+.+. |-.+|.+++||++|++|++++.|..|.+||+..|.+++.+.
T Consensus 26 a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRWGD-YLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR 104 (405)
T ss_pred cceEEeccCcc-eeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE
Confidence 44555589987 99999999999999999999888887 99999999999999999999999999999999999998887
Q ss_pred cCCCcEEEEEEcCCCC-EEEEEeCCCcEEEEEccCCCcceEEEccC---CCCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 013184 318 GHLDFSFASAWHPDGR-IFATGNQDKTCRVWDVRNLSKSVAVLKGN---LGAIRSIRFTSDGNFMAMAEPADFVHVYDAK 393 (448)
Q Consensus 318 ~h~~~v~~~~~~p~g~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~---~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~ 393 (448)
...+|+.+.|+|..+ .++..-.+..-.+-++..+...+...... .....+..|.+.|+++++|...|.+.|++..
T Consensus 105 -f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~ 183 (405)
T KOG1273|consen 105 -FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE 183 (405)
T ss_pred -ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecc
Confidence 678999999999443 33333334445555554311111111111 1122334689999999999999999999999
Q ss_pred CCceeeeeecCc-CceEEEEEccCCCeEEEEEecCCcce
Q 013184 394 NGFEKEQEIDFF-GEISGMTFSPDTEALFIGVWDRTYGS 431 (448)
Q Consensus 394 ~~~~~~~~~~~~-~~v~~~~fspdg~~L~~~~~D~~~~~ 431 (448)
+.+++..+.... ..|.++-|+..|++|++-+.|+.++.
T Consensus 184 t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ 222 (405)
T KOG1273|consen 184 TLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRT 222 (405)
T ss_pred hheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEE
Confidence 988877665544 67999999999999999999987664
No 155
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.79 E-value=1.6e-17 Score=159.59 Aligned_cols=265 Identities=13% Similarity=0.195 Sum_probs=206.0
Q ss_pred ccceeeeCCCCeEEEecCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCCCe
Q 013184 135 LRNLVWSTSKHDVYLMSHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQGE 212 (448)
Q Consensus 135 ~r~l~~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~dg~ 212 (448)
+-++...|++..+.++.++.+.++|+..+ ..+..+.||.. -|.|+++ +|+.+++|+.|..
T Consensus 15 i~d~afkPDGsqL~lAAg~rlliyD~ndG--~llqtLKgHKD----------------tVycVAys~dGkrFASG~aDK~ 76 (1081)
T KOG1538|consen 15 INDIAFKPDGTQLILAAGSRLLVYDTSDG--TLLQPLKGHKD----------------TVYCVAYAKDGKRFASGSADKS 76 (1081)
T ss_pred hheeEECCCCceEEEecCCEEEEEeCCCc--ccccccccccc----------------eEEEEEEccCCceeccCCCcee
Confidence 45667889999999999999999998543 44455677766 3899998 9999999999999
Q ss_pred EEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEeecCCCeeEEEECCCCCE
Q 013184 213 LICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFSFPWPVNHTSLSPDGKL 292 (448)
Q Consensus 213 i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~ 292 (448)
|.+|.-...+ .+...|+..+.|+.+ +|-.. ++++++- ...-+|..+... +...+....|.+++|..||++
T Consensus 77 VI~W~~klEG-----~LkYSH~D~IQCMsF--NP~~h-~LasCsL-sdFglWS~~qK~-V~K~kss~R~~~CsWtnDGqy 146 (1081)
T KOG1538|consen 77 VIIWTSKLEG-----ILKYSHNDAIQCMSF--NPITH-QLASCSL-SDFGLWSPEQKS-VSKHKSSSRIICCSWTNDGQY 146 (1081)
T ss_pred EEEecccccc-----eeeeccCCeeeEeec--CchHH-Hhhhcch-hhccccChhhhh-HHhhhhheeEEEeeecCCCcE
Confidence 9999976554 345577777778766 77754 7777765 346688776432 333345567899999999999
Q ss_pred EEEEecCCcEEEEECCCCceeEeee---cCCCcEEEEEEcCCC-----CEEEEEeCCCcEEEEEccCCCcceEEEccCCC
Q 013184 293 LVIVGDNPEGILVDSQTGKAIMPLC---GHLDFSFASAWHPDG-----RIFATGNQDKTCRVWDVRNLSKSVAVLKGNLG 364 (448)
Q Consensus 293 l~~~~~d~~i~i~d~~~~~~~~~l~---~h~~~v~~~~~~p~g-----~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 364 (448)
++.|..+|+|.|-+ .+|+....+. |...+|++++|+|.. ..+++.....++..+.+. ++.+..-+.-.-
T Consensus 147 lalG~~nGTIsiRN-k~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls--G~~Igk~r~L~F 223 (1081)
T KOG1538|consen 147 LALGMFNGTISIRN-KNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS--GKQIGKDRALNF 223 (1081)
T ss_pred EEEeccCceEEeec-CCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec--ceeecccccCCC
Confidence 99999999999986 4444433333 477899999999953 367777888888888874 454443333334
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEecCCcce
Q 013184 365 AIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDRTYGS 431 (448)
Q Consensus 365 ~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~~~~ 431 (448)
...|+.+.|+|.|++.|+.++.+++|- +.|-.+.+.......|++++..|++++.++|+.||++..
T Consensus 224 dP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiAC 289 (1081)
T KOG1538|consen 224 DPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIAC 289 (1081)
T ss_pred CchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeeh
Confidence 557899999999999999999999998 677777777777789999999999999999999998753
No 156
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=9.2e-18 Score=148.46 Aligned_cols=192 Identities=17% Similarity=0.262 Sum_probs=144.5
Q ss_pred eecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEE------EE----------------------------
Q 013184 229 TTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLS------KH---------------------------- 274 (448)
Q Consensus 229 ~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~------~~---------------------------- 274 (448)
...+|...+.+++| +.+|. .|++++.|+.|++|+++.+... ..
T Consensus 81 ~LKgH~~~vt~~~F--sSdGK-~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l 157 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAF--SSDGK-KLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKL 157 (420)
T ss_pred hhhccCCceeeeEE--cCCCc-eeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEE
Confidence 44567777778877 77776 8999999999999998753211 00
Q ss_pred ------------------------ee--cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEE
Q 013184 275 ------------------------FS--FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAW 328 (448)
Q Consensus 275 ------------------------~~--~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~ 328 (448)
|. |...+..+-....+++|++++.|..|.||+++ |+.+..+......-+..+.
T Consensus 158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aav 236 (420)
T KOG2096|consen 158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAV 236 (420)
T ss_pred EEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccccccceee
Confidence 00 12223333344456788889999999999998 9988888776666677899
Q ss_pred cCCCCEEEEEeCCCcEEEEEccCC-------CcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceee--
Q 013184 329 HPDGRIFATGNQDKTCRVWDVRNL-------SKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKE-- 399 (448)
Q Consensus 329 ~p~g~~l~s~~~d~~i~iwd~~~~-------~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~-- 399 (448)
+|+|++|++++-.--|++|.+--. -..+..+++|.+.|..++|||+.+.+++.+.||.++|||+.-.+...
T Consensus 237 SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qD 316 (420)
T KOG2096|consen 237 SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQD 316 (420)
T ss_pred CCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCC
Confidence 999999999999889999987321 13456789999999999999999999999999999999986433221
Q ss_pred -----e----eecCcCceEEEEEccCCCeEEEEE
Q 013184 400 -----Q----EIDFFGEISGMTFSPDTEALFIGV 424 (448)
Q Consensus 400 -----~----~~~~~~~v~~~~fspdg~~L~~~~ 424 (448)
. +....+....++.+|.|+.|+++.
T Consensus 317 pk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~ 350 (420)
T KOG2096|consen 317 PKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF 350 (420)
T ss_pred chHhhcCCcchhhcCCCceEEEeCCCCcEEEeec
Confidence 1 112234566899999999999875
No 157
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=6.2e-19 Score=179.18 Aligned_cols=241 Identities=19% Similarity=0.264 Sum_probs=183.2
Q ss_pred ceeeeCCCCe---EEEe--cCCeEEEEecCC---CceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe---cCCEEE
Q 013184 137 NLVWSTSKHD---VYLM--SHFSIVHWSSLS---SKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV---RDNLLI 205 (448)
Q Consensus 137 ~l~~~~~~~~---v~~~--~~~~v~~w~~~~---~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~---~~~~lv 205 (448)
.|.|+..+.+ |..+ -+|.|.+|++.. +...+++ ....+|+| .|.+|.| .+++|+
T Consensus 69 kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~l------a~~~~h~G---------~V~gLDfN~~q~nlLA 133 (1049)
T KOG0307|consen 69 KLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVL------ATKSKHTG---------PVLGLDFNPFQGNLLA 133 (1049)
T ss_pred eeeecccCCCccceeeccccCCceEEecchhhccCcchHHH------hhhcccCC---------ceeeeeccccCCceee
Confidence 5678876655 4444 378899999754 2222222 11223333 4788888 778999
Q ss_pred EEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee-cC--CCee
Q 013184 206 AGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS-FP--WPVN 282 (448)
Q Consensus 206 sg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~--~~v~ 282 (448)
+|+.+|+|.|||+.+....+... .......+.++.| +..-.++|++++.+|.+.|||++..+.+-.+. +. ..+.
T Consensus 134 SGa~~geI~iWDlnn~~tP~~~~-~~~~~~eI~~lsW--NrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S 210 (1049)
T KOG0307|consen 134 SGADDGEILIWDLNKPETPFTPG-SQAPPSEIKCLSW--NRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCS 210 (1049)
T ss_pred ccCCCCcEEEeccCCcCCCCCCC-CCCCcccceEecc--chhhhHHhhccCCCCCceeccccCCCcccccccCCCcccee
Confidence 99999999999999876543322 1122333455555 67677789999999999999999887776666 32 3478
Q ss_pred EEEECCCC-CEEEEEecC---CcEEEEECCCC-ceeEeeecCCCcEEEEEEcCCC-CEEEEEeCCCcEEEEEccCCCcce
Q 013184 283 HTSLSPDG-KLLVIVGDN---PEGILVDSQTG-KAIMPLCGHLDFSFASAWHPDG-RIFATGNQDKTCRVWDVRNLSKSV 356 (448)
Q Consensus 283 ~~~~sp~~-~~l~~~~~d---~~i~i~d~~~~-~~~~~l~~h~~~v~~~~~~p~g-~~l~s~~~d~~i~iwd~~~~~~~~ 356 (448)
.++|+|+. ..++++++| ..|.+||++.- .+++.+++|...|.++.|.+.+ +++++++.|+.|.+|+..+ ++.+
T Consensus 211 ~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~t-gEvl 289 (1049)
T KOG0307|consen 211 VLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNT-GEVL 289 (1049)
T ss_pred eeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCC-ceEe
Confidence 99999964 456666654 36999998753 4577788999999999999955 8999999999999999977 8899
Q ss_pred EEEccCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCc
Q 013184 357 AVLKGNLGAIRSIRFTSDGN-FMAMAEPADFVHVYDAKNGF 396 (448)
Q Consensus 357 ~~~~~~~~~v~~l~~sp~g~-~l~s~~~d~~v~vwd~~~~~ 396 (448)
..+.....++..+.|+|... .+++++-+|.|.||.+..+.
T Consensus 290 ~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 290 GELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 99988888999999999765 88899999999999987654
No 158
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=7.7e-17 Score=142.11 Aligned_cols=235 Identities=15% Similarity=0.234 Sum_probs=164.9
Q ss_pred eeCCCCeEEEe-cCCeEEEEecCCC--ceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe----cCCEEEEEeCCCe
Q 013184 140 WSTSKHDVYLM-SHFSIVHWSSLSS--KRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV----RDNLLIAGGFQGE 212 (448)
Q Consensus 140 ~~~~~~~v~~~-~~~~v~~w~~~~~--~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~----~~~~lvsg~~dg~ 212 (448)
+-..+.++..+ ++.+|++|+.... +-...-....|-. .|..+.+ -|+.+++++.|++
T Consensus 21 ~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~----------------Si~rV~WAhPEfGqvvA~cS~Drt 84 (361)
T KOG2445|consen 21 FDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDG----------------SIWRVVWAHPEFGQVVATCSYDRT 84 (361)
T ss_pred ecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCC----------------cEEEEEecCccccceEEEEecCCc
Confidence 44455556555 5788999996332 2223333332222 4666666 6899999999999
Q ss_pred EEEEEcCCC-----C--ceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCC------ceEEEEee---
Q 013184 213 LICKYLDQP-----G--VSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMER------FQLSKHFS--- 276 (448)
Q Consensus 213 i~vw~~~~~-----~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~------~~~~~~~~--- 276 (448)
+.||.=... + ...+ .........+..++|....-| ..+++++.||.||||+... .++...+.
T Consensus 85 v~iWEE~~~~~~~~~~~Wv~~-ttl~DsrssV~DV~FaP~hlG-LklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~ 162 (361)
T KOG2445|consen 85 VSIWEEQEKSEEAHGRRWVRR-TTLVDSRSSVTDVKFAPKHLG-LKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVI 162 (361)
T ss_pred eeeeeecccccccccceeEEE-EEeecCCcceeEEEecchhcc-eEEEEeccCcEEEEEecCCccccccchhhhhhhhcc
Confidence 999975211 1 1112 223344455566666433334 4899999999999997543 22333333
Q ss_pred -----cCCCeeEEEECC---CCCEEEEEecC-----CcEEEEECCCC----ceeEeeecCCCcEEEEEEcCC-C---CEE
Q 013184 277 -----FPWPVNHTSLSP---DGKLLVIVGDN-----PEGILVDSQTG----KAIMPLCGHLDFSFASAWHPD-G---RIF 335 (448)
Q Consensus 277 -----~~~~v~~~~~sp---~~~~l~~~~~d-----~~i~i~d~~~~----~~~~~l~~h~~~v~~~~~~p~-g---~~l 335 (448)
+..+..|+.|+| ...+||+|+.+ +.++||....+ ..+.++.+|.++|+.++|.|+ | .+|
T Consensus 163 ~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~l 242 (361)
T KOG2445|consen 163 DPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLL 242 (361)
T ss_pred CCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeE
Confidence 556788999998 45688888766 47888865433 345678899999999999995 3 489
Q ss_pred EEEeCCCcEEEEEccCCC-------------------cceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 013184 336 ATGNQDKTCRVWDVRNLS-------------------KSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAK 393 (448)
Q Consensus 336 ~s~~~d~~i~iwd~~~~~-------------------~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~ 393 (448)
|+++.|| |+||.++... +.+..+..|.+.|..++|+-.|..|++.+.||.|++|-..
T Consensus 243 AvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 243 AVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred EEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 9999999 9999987310 2345577899999999999999999999999999999754
No 159
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.79 E-value=1.8e-16 Score=156.13 Aligned_cols=267 Identities=17% Similarity=0.173 Sum_probs=206.2
Q ss_pred CCCCeEEEecCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEecCCEEEEEeCCCeEEEEEcCCC
Q 013184 142 TSKHDVYLMSHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAVRDNLLIAGGFQGELICKYLDQP 221 (448)
Q Consensus 142 ~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~~~~~lvsg~~dg~i~vw~~~~~ 221 (448)
..++.+|.+++..|..|-- ........ .+|.+ .|.-+..-|..++++..++.+.+|.....
T Consensus 84 s~~~~vy~A~g~~i~~~~r-gk~i~~~~--~~~~a----------------~v~~l~~fGe~lia~d~~~~l~vw~~s~~ 144 (910)
T KOG1539|consen 84 SDKDYVYVASGNKIYAYAR-GKHIRHTT--LLHGA----------------KVHLLLPFGEHLIAVDISNILFVWKTSSI 144 (910)
T ss_pred ecCceEEEecCcEEEEEEc-cceEEEEe--ccccc----------------eEEEEeeecceEEEEEccCcEEEEEeccc
Confidence 5567788888888888863 11222222 22222 47777778999999999999999998874
Q ss_pred Cce--eEEEeecCCCCceeeEEEEeCCCC-CeeEEEEeCCCcEEEEecCCceEEEEee-cCCCeeEEEECCCCCEEEEEe
Q 013184 222 GVS--FCSRTTYDENAITNAVEIYNSPSG-GIHFMASNNDCGVRDFDMERFQLSKHFS-FPWPVNHTSLSPDGKLLVIVG 297 (448)
Q Consensus 222 ~~~--~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~ 297 (448)
... ....+.......+.++. +|+- -+.++.|+..|.+.+|++++++.+.+++ +...|+++.-+|--..+++|.
T Consensus 145 ~~e~~l~~~~~~~~~~~Ital~---HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~ 221 (910)
T KOG1539|consen 145 QEELYLQSTFLKVEGDFITALL---HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGL 221 (910)
T ss_pred cccccccceeeeccCCceeeEe---cchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEec
Confidence 211 11122222223233332 3432 3368999999999999999999999999 789999999999889999999
Q ss_pred cCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCC-EEEEEeCCCcEEEEEccCCCcceEEE-ccCCCCeEEEEEcCCC
Q 013184 298 DNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGR-IFATGNQDKTCRVWDVRNLSKSVAVL-KGNLGAIRSIRFTSDG 375 (448)
Q Consensus 298 ~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~-~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~v~~l~~sp~g 375 (448)
.+|+|.|++++.++.+.+++...+.|++++|.-||+ ++|+|+..|.+-+||+.. .+.+..+ ..|.+.|..+.|-|..
T Consensus 222 ~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~-kkl~~v~~nah~~sv~~~~fl~~e 300 (910)
T KOG1539|consen 222 ENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEK-KKLINVTRNAHYGSVTGATFLPGE 300 (910)
T ss_pred cCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCC-CeeeeeeeccccCCcccceecCCC
Confidence 999999999999999999985569999999999997 567777779999999986 5555444 4788999999999999
Q ss_pred CEEEEEeCCCeEEEEECCC--C--ceeeeeecCcCceEEEEEc-cCCCeEEEEEecCCcce
Q 013184 376 NFMAMAEPADFVHVYDAKN--G--FEKEQEIDFFGEISGMTFS-PDTEALFIGVWDRTYGS 431 (448)
Q Consensus 376 ~~l~s~~~d~~v~vwd~~~--~--~~~~~~~~~~~~v~~~~fs-pdg~~L~~~~~D~~~~~ 431 (448)
..|++++.|+.+++|=..+ | ..++.-.+|..+..++.|. ..|.++.+++.|++.+.
T Consensus 301 pVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~ 361 (910)
T KOG1539|consen 301 PVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRS 361 (910)
T ss_pred ceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhh
Confidence 9999999999888775443 3 2334456799999999998 78999999999987653
No 160
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=1.1e-17 Score=159.00 Aligned_cols=233 Identities=16% Similarity=0.123 Sum_probs=168.2
Q ss_pred eeeEEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCc
Q 013184 192 TQVSTLAV--RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERF 269 (448)
Q Consensus 192 ~~i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~ 269 (448)
..|.++++ .|..|++|+.||+|+||.+.++.......+ .+.+.++.| +|.+..-++++.....+.|.+..-|
T Consensus 401 g~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~----d~~I~~vaw--~P~~~~~vLAvA~~~~~~ivnp~~G 474 (733)
T KOG0650|consen 401 GLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF----DSEIRSVAW--NPLSDLCVLAVAVGECVLIVNPIFG 474 (733)
T ss_pred CeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee----cceeEEEEe--cCCCCceeEEEEecCceEEeCcccc
Confidence 46777777 899999999999999999998875433332 235667766 6665544444444444444432111
Q ss_pred --------------------------------------eEEEEeecCCCeeEEEECCCCCEEEEEec---CCcEEEEECC
Q 013184 270 --------------------------------------QLSKHFSFPWPVNHTSLSPDGKLLVIVGD---NPEGILVDSQ 308 (448)
Q Consensus 270 --------------------------------------~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---d~~i~i~d~~ 308 (448)
.+...+.|..+|+.+.|+..|.+|++... ...|.|.++.
T Consensus 475 ~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLS 554 (733)
T KOG0650|consen 475 DRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLS 554 (733)
T ss_pred chhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecc
Confidence 01234457778888888888888887643 2345555553
Q ss_pred -----------------------------------------CCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEE
Q 013184 309 -----------------------------------------TGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVW 347 (448)
Q Consensus 309 -----------------------------------------~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iw 347 (448)
....+..+......|..++.+|.|..|+.|+.|+.+..+
T Consensus 555 K~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~Wf 634 (733)
T KOG0650|consen 555 KRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWF 634 (733)
T ss_pred cccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEE
Confidence 222233333344567789999999999999999999999
Q ss_pred EccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC------CCc---eeeeeecCcCc----eEEEEEc
Q 013184 348 DVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAK------NGF---EKEQEIDFFGE----ISGMTFS 414 (448)
Q Consensus 348 d~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~------~~~---~~~~~~~~~~~----v~~~~fs 414 (448)
|+.-..++.+++..|...+++++|++.-.++++|+.||++.||.-. ..- .+..+.+|... |..+.|+
T Consensus 635 DldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wH 714 (733)
T KOG0650|consen 635 DLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWH 714 (733)
T ss_pred EcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeeccc
Confidence 9987778999999999999999999999999999999999998522 111 23455566544 8889999
Q ss_pred cCCCeEEEEEecCCcc
Q 013184 415 PDTEALFIGVWDRTYG 430 (448)
Q Consensus 415 pdg~~L~~~~~D~~~~ 430 (448)
|.-.+|++++.|++++
T Consensus 715 P~qpWLfsAGAd~tir 730 (733)
T KOG0650|consen 715 PRQPWLFSAGADGTIR 730 (733)
T ss_pred CCCceEEecCCCceEE
Confidence 9999999999998765
No 161
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=2.1e-18 Score=163.18 Aligned_cols=281 Identities=17% Similarity=0.137 Sum_probs=200.4
Q ss_pred CccCCCcHhhhh---cCCCCCCCcCCccccCHHHHHHHHHhcccCCcCCCCCccCccc--c------cc-CcccccCcce
Q 013184 51 NKITDTTAADAR---RGKDIQGIPWERLSITREKYRQTRLEQYKNYENIPQSGEGSEK--E------CK-PTKKGGKYYE 118 (448)
Q Consensus 51 ~~~~~~~~~~~~---~~~d~q~~~w~~~~~~r~~~~~~r~~~~~~~~~~~~s~~~~~~--~------~~-~~~~~~~~~~ 118 (448)
+++..+..++.. +.++-+...|+.+.++|+|+..+|..+|++.++...+..+-.. . .+ ......+.|+
T Consensus 260 tla~l~I~~~~dd~~~~k~a~~k~w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~t 339 (577)
T KOG0642|consen 260 TLAGLTIEDEFDDLSDLKKAFTKKWNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILT 339 (577)
T ss_pred chhcccccccccchhhhhhhhheecceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEE
Confidence 455555555544 3455678999999999999999999999999998876665221 1 11 1233558899
Q ss_pred eeecccCCCCCcccccccceeeeCCCCeEEE-e-cCCeEEEEecCCCceeE-----EEe----cCCCCCCCCCCCCCccc
Q 013184 119 FWRNTRSVKSTILHFQLRNLVWSTSKHDVYL-M-SHFSIVHWSSLSSKRTE-----VLD----VSGHVAPCEKHPGNLLE 187 (448)
Q Consensus 119 f~~~~~~~~~~~~hfq~r~l~~~~~~~~v~~-~-~~~~v~~w~~~~~~~~~-----~~~----~~gh~~p~~~~~~~~~~ 187 (448)
|+.|..+|.| ++.+.....+| + .|++|+.|++. .+... ... +.||..
T Consensus 340 fraH~gPVl~----------v~v~~n~~~~ysgg~Dg~I~~w~~p-~n~dp~ds~dp~vl~~~l~Ghtd----------- 397 (577)
T KOG0642|consen 340 FRAHEGPVLC----------VVVPSNGEHCYSGGIDGTIRCWNLP-PNQDPDDSYDPSVLSGTLLGHTD----------- 397 (577)
T ss_pred EecccCceEE----------EEecCCceEEEeeccCceeeeeccC-CCCCcccccCcchhccceecccc-----------
Confidence 9999999887 66666555444 4 48899999865 22211 111 223332
Q ss_pred CCcceeeEEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEe
Q 013184 188 GFTQTQVSTLAV--RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFD 265 (448)
Q Consensus 188 ~~~~~~i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd 265 (448)
+|+.+++ ....|+++++||+++.|....... |........+....+++. .....+.++...-+.-.+.+
T Consensus 398 -----avw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~--~~f~~~~e~g~Plsvd~~--ss~~a~~~~s~~~~~~~~~~ 468 (577)
T KOG0642|consen 398 -----AVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP--CTFGEPKEHGYPLSVDRT--SSRPAHSLASFRFGYTSIDD 468 (577)
T ss_pred -----ceeeeeecccccceeeecCCceEEeeccCCcCc--cccCCccccCCcceEeec--cchhHhhhhhcccccccchh
Confidence 5777777 667899999999999999876554 333333344455566552 22212344444444445556
Q ss_pred cCCceEEEEeec---C-----CCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEE
Q 013184 266 MERFQLSKHFSF---P-----WPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFAT 337 (448)
Q Consensus 266 ~~~~~~~~~~~~---~-----~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s 337 (448)
++..+....+.. + ..++-+.++|.+.+.+++..++.|+++|..+++.++....|...++++++.|+|.+|++
T Consensus 469 ~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s 548 (577)
T KOG0642|consen 469 MEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMS 548 (577)
T ss_pred hhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEe
Confidence 666555555541 1 34788999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCcEEEEEccCCCcceEEEccCC
Q 013184 338 GNQDKTCRVWDVRNLSKSVAVLKGNL 363 (448)
Q Consensus 338 ~~~d~~i~iwd~~~~~~~~~~~~~~~ 363 (448)
++.|+.+++|.+.. ..++.....|.
T Consensus 549 ~s~d~sv~l~kld~-k~~~~es~~~r 573 (577)
T KOG0642|consen 549 GSHDGSVRLWKLDV-KTCVLESTAHR 573 (577)
T ss_pred ecCCceeehhhccc-hheeecccccc
Confidence 99999999999965 67777666664
No 162
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.78 E-value=5.4e-17 Score=147.43 Aligned_cols=244 Identities=18% Similarity=0.217 Sum_probs=172.8
Q ss_pred cCCEEEE---EeCCCeEEEEEcCCCC-ceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCce-----
Q 013184 200 RDNLLIA---GGFQGELICKYLDQPG-VSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQ----- 270 (448)
Q Consensus 200 ~~~~lvs---g~~dg~i~vw~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~----- 270 (448)
+.++++. ++.-|...+.-+...+ ......+..+|.+.+.-+.| +|-+...|++||.|.+|.||.+..+.
T Consensus 43 NPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w--~PfnD~vIASgSeD~~v~vW~IPe~~l~~~l 120 (472)
T KOG0303|consen 43 NPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDW--CPFNDCVIASGSEDTKVMVWQIPENGLTRDL 120 (472)
T ss_pred CCceEEEEEecCCCcceeecccccccccCCCCCCccCcccccccccc--CccCCceeecCCCCceEEEEECCCcccccCc
Confidence 4455443 2233444444444333 11122334466666555544 88888899999999999999986432
Q ss_pred --EEEEee-cCCCeeEEEECC-CCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEE
Q 013184 271 --LSKHFS-FPWPVNHTSLSP-DGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRV 346 (448)
Q Consensus 271 --~~~~~~-~~~~v~~~~~sp-~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~i 346 (448)
++..+. |...|..++|+| ..+.|++++.|..|.+|++.+|+.+.++. |.+.|+++.|+.+|.+|+|.+.|+.|||
T Consensus 121 tepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv 199 (472)
T KOG0303|consen 121 TEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRV 199 (472)
T ss_pred ccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEE
Confidence 344444 899999999999 56788899999999999999999998888 9999999999999999999999999999
Q ss_pred EEccCCCcceEEEccCCC-CeEEEEEcCCCCEEEEEe---CCCeEEEEECCCCceee--eeecCcCceEEEEEccCCCeE
Q 013184 347 WDVRNLSKSVAVLKGNLG-AIRSIRFTSDGNFMAMAE---PADFVHVYDAKNGFEKE--QEIDFFGEISGMTFSPDTEAL 420 (448)
Q Consensus 347 wd~~~~~~~~~~~~~~~~-~v~~l~~sp~g~~l~s~~---~d~~v~vwd~~~~~~~~--~~~~~~~~v~~~~fspdg~~L 420 (448)
||.|. ++.+..-.+|.+ .-..+.|-.+|.++.+|- .+..+-+||..+..... +..+....|.=-=|.||...+
T Consensus 200 ~dpr~-~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~iv 278 (472)
T KOG0303|consen 200 IDPRR-GTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIV 278 (472)
T ss_pred EcCCC-CcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEE
Confidence 99998 888888888876 334566778888555542 35689999976654432 223344556556678898888
Q ss_pred EEEEe-cCCcceEEEEecccceEecccc
Q 013184 421 FIGVW-DRTYGSLLQYNRCRNYTYLDTL 447 (448)
Q Consensus 421 ~~~~~-D~~~~~ll~~~~~~~~~~l~~~ 447 (448)
+.++. |+.++-.-.....-...||++|
T Consensus 279 Yl~GKGD~~IRYyEit~d~P~~hyln~f 306 (472)
T KOG0303|consen 279 YLCGKGDSSIRYFEITNEPPFVHYLNTF 306 (472)
T ss_pred EEEecCCcceEEEEecCCCceeEEeccc
Confidence 86654 5554443333333345677664
No 163
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.78 E-value=2.1e-15 Score=144.77 Aligned_cols=269 Identities=14% Similarity=0.117 Sum_probs=166.4
Q ss_pred EEEe--cCCeEEEEecCC-CceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEecCCEEEEE-eCCCeEEEEEcCCCC
Q 013184 147 VYLM--SHFSIVHWSSLS-SKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAVRDNLLIAG-GFQGELICKYLDQPG 222 (448)
Q Consensus 147 v~~~--~~~~v~~w~~~~-~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~~~~~lvsg-~~dg~i~vw~~~~~~ 222 (448)
+|++ .+++|.+|+..+ +....+..+...-.| ...+++.++++|+++ ..++.|.+|+++..+
T Consensus 4 ~y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~---------------~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g 68 (330)
T PRK11028 4 VYIASPESQQIHVWNLNHEGALTLLQVVDVPGQV---------------QPMVISPDKRHLYVGVRPEFRVLSYRIADDG 68 (330)
T ss_pred EEEEcCCCCCEEEEEECCCCceeeeeEEecCCCC---------------ccEEECCCCCEEEEEECCCCcEEEEEECCCC
Confidence 4554 467799999853 333333222211111 123445578887665 458899999997433
Q ss_pred c-eeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCC-c---eEEEEeecCCCeeEEEECCCCCEEEEEe
Q 013184 223 V-SFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMER-F---QLSKHFSFPWPVNHTSLSPDGKLLVIVG 297 (448)
Q Consensus 223 ~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~-~---~~~~~~~~~~~v~~~~~sp~~~~l~~~~ 297 (448)
. ....... ..+.+..+ .++|+++.++++...++.|.+|++.+ + +.+..+.....+.+++++|+++++++++
T Consensus 69 ~l~~~~~~~--~~~~p~~i--~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~ 144 (330)
T PRK11028 69 ALTFAAESP--LPGSPTHI--STDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPC 144 (330)
T ss_pred ceEEeeeec--CCCCceEE--EECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEee
Confidence 2 2112211 12223344 44899985555555689999999864 2 2333333434567889999999887665
Q ss_pred -cCCcEEEEECCCCceeE-------eeecCCCcEEEEEEcCCCCEEEEEeC-CCcEEEEEccCC-C--cceEEEccC---
Q 013184 298 -DNPEGILVDSQTGKAIM-------PLCGHLDFSFASAWHPDGRIFATGNQ-DKTCRVWDVRNL-S--KSVAVLKGN--- 362 (448)
Q Consensus 298 -~d~~i~i~d~~~~~~~~-------~l~~h~~~v~~~~~~p~g~~l~s~~~-d~~i~iwd~~~~-~--~~~~~~~~~--- 362 (448)
.++.|.+||+.+...+. ... .......++|+|+|+++++++. +++|.+|++... + ..+..+...
T Consensus 145 ~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~ 223 (330)
T PRK11028 145 LKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPAD 223 (330)
T ss_pred CCCCEEEEEEECCCCcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCc
Confidence 56899999997633221 111 1234567999999999988877 899999999742 1 223333221
Q ss_pred ---CCCeEEEEEcCCCCEEEEEeC-CCeEEEEECCCCceeeeeecC---cCceEEEEEccCCCeEEEEEecCCcceEEEE
Q 013184 363 ---LGAIRSIRFTSDGNFMAMAEP-ADFVHVYDAKNGFEKEQEIDF---FGEISGMTFSPDTEALFIGVWDRTYGSLLQY 435 (448)
Q Consensus 363 ---~~~v~~l~~sp~g~~l~s~~~-d~~v~vwd~~~~~~~~~~~~~---~~~v~~~~fspdg~~L~~~~~D~~~~~ll~~ 435 (448)
......+.++|+|++|+++.. ++.|.+|++........+..+ ......++|+|+|++|+++......-.++..
T Consensus 224 ~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~ 303 (330)
T PRK11028 224 FSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEI 303 (330)
T ss_pred CCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEE
Confidence 112336889999999999854 689999998654322222222 2346789999999999998763333333333
No 164
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.77 E-value=4.5e-16 Score=140.56 Aligned_cols=224 Identities=16% Similarity=0.130 Sum_probs=169.1
Q ss_pred eEEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCC--CcEEEEecCCc
Q 013184 194 VSTLAV--RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNND--CGVRDFDMERF 269 (448)
Q Consensus 194 i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d--g~v~iwd~~~~ 269 (448)
+..+.+ +...|..|+.+|. +++..+..+. ........+..+...++.+ +++..+.+ ..+++++++..
T Consensus 8 i~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k-----~~~~~~~~~~IvEmLFSSS---LvaiV~~~qpr~Lkv~~~Kk~ 78 (391)
T KOG2110|consen 8 INFIGFNQDSTLLSVGSKDGY-KIFSCSPFEK-----CFSKDTEGVSIVEMLFSSS---LVAIVSIKQPRKLKVVHFKKK 78 (391)
T ss_pred eeeeeeccceeEEEccCCCce-eEEecCchHH-----hhcccCCCeEEEEeecccc---eeEEEecCCCceEEEEEcccC
Confidence 444456 5567778888885 6776654433 1111222344566666543 44444443 45999999999
Q ss_pred eEEEEeecCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeec---CCCcEEEEEEcCCCCEEEEEe--CCCcE
Q 013184 270 QLSKHFSFPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCG---HLDFSFASAWHPDGRIFATGN--QDKTC 344 (448)
Q Consensus 270 ~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~---h~~~v~~~~~~p~g~~l~s~~--~d~~i 344 (448)
..+..+.++.+|.++.++. +.|+++-.. .|+|||+++.+.++++.. +...+.+++.++.+.|+|.-+ ..|.|
T Consensus 79 ~~ICe~~fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV 155 (391)
T KOG2110|consen 79 TTICEIFFPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDV 155 (391)
T ss_pred ceEEEEecCCceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceE
Confidence 9999999999999999974 456666555 499999999999888764 445566666666667888643 36889
Q ss_pred EEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCe-EEEEECCCCceeeeeecC--cCceEEEEEccCCCeEE
Q 013184 345 RVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADF-VHVYDAKNGFEKEQEIDF--FGEISGMTFSPDTEALF 421 (448)
Q Consensus 345 ~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~-v~vwd~~~~~~~~~~~~~--~~~v~~~~fspdg~~L~ 421 (448)
.|||+.+ -+++..+..|.+++-+++|+|+|.+||+|+..|+ ||||.+.+|+.+.++... ...|.+++|+|++++|+
T Consensus 156 ~l~d~~n-l~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~ 234 (391)
T KOG2110|consen 156 VLFDTIN-LQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLA 234 (391)
T ss_pred EEEEccc-ceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEE
Confidence 9999987 7889999999999999999999999999999985 799999999999887642 34699999999999998
Q ss_pred EEEecCCcc
Q 013184 422 IGVWDRTYG 430 (448)
Q Consensus 422 ~~~~D~~~~ 430 (448)
+.+.-+++.
T Consensus 235 ~sS~TeTVH 243 (391)
T KOG2110|consen 235 ASSNTETVH 243 (391)
T ss_pred EecCCCeEE
Confidence 888766643
No 165
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.77 E-value=1.5e-17 Score=143.54 Aligned_cols=252 Identities=16% Similarity=0.172 Sum_probs=172.4
Q ss_pred ccCcceeeecccCCCCCcccccccceeeeCCCCeEEEe-cCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcc
Q 013184 113 GGKYYEFWRNTRSVKSTILHFQLRNLVWSTSKHDVYLM-SHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQ 191 (448)
Q Consensus 113 ~~~~~~f~~~~~~~~~~~~hfq~r~l~~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~ 191 (448)
..|||..|.+...+.+ +.......++.. ..+.|+.|.+.+.+....+.+.|.
T Consensus 4 PdP~fvLRp~~~~v~s----------~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~----------------- 56 (323)
T KOG0322|consen 4 PDPFFVLRPHSSSVTS----------VLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGR----------------- 56 (323)
T ss_pred CCCeeEeccccchhee----------hhhccchhhhcccccceEEEEEeecCccchhhhhhcc-----------------
Confidence 4588888877666654 222233333333 356799999888766666554322
Q ss_pred eeeEEEEe-cCCEEEEEeCCCeEEEEEcCCCC-----------ceeEEEeecC---------------------------
Q 013184 192 TQVSTLAV-RDNLLIAGGFQGELICKYLDQPG-----------VSFCSRTTYD--------------------------- 232 (448)
Q Consensus 192 ~~i~~l~~-~~~~lvsg~~dg~i~vw~~~~~~-----------~~~~~~~~~~--------------------------- 232 (448)
..|+.+.. .+..|.+-+.|+.+.+|++.... .-+|......
T Consensus 57 ~~it~lq~~p~d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~ 136 (323)
T KOG0322|consen 57 LFITNLQSIPNDSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDT 136 (323)
T ss_pred ceeeceeecCCcchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCcc
Confidence 24677766 56888889999999999886522 1111110000
Q ss_pred ------------CCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEE----------EEee-cCCCeeEEEECCC
Q 013184 233 ------------ENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLS----------KHFS-FPWPVNHTSLSPD 289 (448)
Q Consensus 233 ------------~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~----------~~~~-~~~~v~~~~~sp~ 289 (448)
..+.+.+..+-.......++++|..+|.|.+||+.++..+ .... |..+|.++.+.+.
T Consensus 137 tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~ 216 (323)
T KOG0322|consen 137 TQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASS 216 (323)
T ss_pred ceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechh
Confidence 0011111111111111236778889999999999986322 2222 7889999999876
Q ss_pred CCEEEEEecCCcEEEEECCC--Ccee--EeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCC
Q 013184 290 GKLLVIVGDNPEGILVDSQT--GKAI--MPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGA 365 (448)
Q Consensus 290 ~~~l~~~~~d~~i~i~d~~~--~~~~--~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 365 (448)
-..=++|+.+..+..|.+.- +.+. ..+.-..-.+..+...||++.+||++.|+.||||..++ ..++.+++.|.+.
T Consensus 217 ~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrt-l~pLAVLkyHsag 295 (323)
T KOG0322|consen 217 CDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRT-LNPLAVLKYHSAG 295 (323)
T ss_pred hcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEecc-CCchhhhhhhhcc
Confidence 55556777777888887653 3321 12222345678899999999999999999999999998 8999999999999
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 013184 366 IRSIRFTSDGNFMAMAEPADFVHVYDA 392 (448)
Q Consensus 366 v~~l~~sp~g~~l~s~~~d~~v~vwd~ 392 (448)
|++++|+|+...||+|+.|++|.+|++
T Consensus 296 vn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 296 VNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred eeEEEeCCCCchhhhccCCceEEeeec
Confidence 999999999999999999999999986
No 166
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=1.4e-16 Score=160.31 Aligned_cols=273 Identities=15% Similarity=0.197 Sum_probs=186.8
Q ss_pred ceeeeCCCCeEEEec-CCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe----cCCEEEEEeCCC
Q 013184 137 NLVWSTSKHDVYLMS-HFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV----RDNLLIAGGFQG 211 (448)
Q Consensus 137 ~l~~~~~~~~v~~~~-~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~----~~~~lvsg~~dg 211 (448)
-+...+-...++.+. ...|++||...++. +-.+..+. +....|+.|.. +..+|++|+.||
T Consensus 1069 ~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~--l~~F~n~~-------------~~~t~Vs~l~liNe~D~aLlLtas~dG 1133 (1387)
T KOG1517|consen 1069 TLKFHPFEPQIAAADDRERIRVWDWEKGRL--LNGFDNGA-------------FPDTRVSDLELINEQDDALLLTASSDG 1133 (1387)
T ss_pred eeeecCCCceeEEcCCcceEEEEecccCce--eccccCCC-------------CCCCccceeeeecccchhheeeeccCc
Confidence 344455556666665 45699999865433 22233222 23356888888 668999999999
Q ss_pred eEEEEEcCCCC---ceeEEE---e---ecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEeec--CCC
Q 013184 212 ELICKYLDQPG---VSFCSR---T---TYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFSF--PWP 280 (448)
Q Consensus 212 ~i~vw~~~~~~---~~~~~~---~---~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~--~~~ 280 (448)
.|+||.--... ...... + .....+.-..++| ....+ +|++++.-..|+|||.+..+++..+.. ...
T Consensus 1134 vIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dW--qQ~~G-~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~ 1210 (1387)
T KOG1517|consen 1134 VIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDW--QQQSG-HLLVTGDVRSIRIWDAHKEQVVADIPYGSSTL 1210 (1387)
T ss_pred eEEEecccccccCCceeEEeeccccccCccCCCCCeeeeh--hhhCC-eEEecCCeeEEEEEecccceeEeecccCCCcc
Confidence 99999854432 111111 0 0111111122333 34444 555565578999999999888887773 444
Q ss_pred eeEEEECC-CCCEEEEEecCCcEEEEECCCCc---eeEeeecCCCc--EEEEEEcCCCC-EEEEEeCCCcEEEEEccCC-
Q 013184 281 VNHTSLSP-DGKLLVIVGDNPEGILVDSQTGK---AIMPLCGHLDF--SFASAWHPDGR-IFATGNQDKTCRVWDVRNL- 352 (448)
Q Consensus 281 v~~~~~sp-~~~~l~~~~~d~~i~i~d~~~~~---~~~~l~~h~~~--v~~~~~~p~g~-~l~s~~~d~~i~iwd~~~~- 352 (448)
|+++.-+- .|+.+++|..||.|++||.+... .+...+.|.+. |..+.+.+.|- .|++|+++|.|++||+|..
T Consensus 1211 vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~ 1290 (1387)
T KOG1517|consen 1211 VTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSS 1290 (1387)
T ss_pred ceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCc
Confidence 56555443 57999999999999999988653 46667788877 99999998775 5999999999999999972
Q ss_pred CcceEEEccCC--C-CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeec-------CcCceEEEEEccCCCeEEE
Q 013184 353 SKSVAVLKGNL--G-AIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEID-------FFGEISGMTFSPDTEALFI 422 (448)
Q Consensus 353 ~~~~~~~~~~~--~-~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~-------~~~~v~~~~fspdg~~L~~ 422 (448)
......+..|. + .++++..+++...+|+|+. +.|+||++.. ..+..+.. ..+.+.+++|+|---.|++
T Consensus 1291 ~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G-~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAa 1368 (1387)
T KOG1517|consen 1291 KETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSG-EQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAA 1368 (1387)
T ss_pred ccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecCh-hhhcccccCcccccCcCCCcceeeecchhHhhhh
Confidence 22222333333 3 5899999999999999998 8999999754 33333222 2367899999999888888
Q ss_pred EEecCCc
Q 013184 423 GVWDRTY 429 (448)
Q Consensus 423 ~~~D~~~ 429 (448)
|+.|.++
T Consensus 1369 G~~Ds~V 1375 (1387)
T KOG1517|consen 1369 GSADSTV 1375 (1387)
T ss_pred ccCCceE
Confidence 8777554
No 167
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.76 E-value=3.2e-15 Score=146.43 Aligned_cols=232 Identities=26% Similarity=0.389 Sum_probs=182.5
Q ss_pred eeEEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEE-eCCCcEEEEecCC-
Q 013184 193 QVSTLAV--RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMAS-NNDCGVRDFDMER- 268 (448)
Q Consensus 193 ~i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-s~dg~v~iwd~~~- 268 (448)
.+.++.+ .+..++.++.++.+.+|+....... ...+...+......+.+. .+++...++.. ..|+.+++|+...
T Consensus 67 ~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~ 144 (466)
T COG2319 67 SITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKL-IKSLEGLHDSSVSKLALS-SPDGNSILLASSSLDGTVKLWDLSTP 144 (466)
T ss_pred eEEEEEECCCCcEEEEecCCCcEEEEEcCCCcee-EEEEeccCCCceeeEEEE-CCCcceEEeccCCCCccEEEEEecCC
Confidence 4666666 6778888889999999999877511 122222222234455554 66666344544 4499999999997
Q ss_pred ceEEEEee-cCCCeeEEEECCCCCEEEEEec-CCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCC-EEEEEeCCCcEE
Q 013184 269 FQLSKHFS-FPWPVNHTSLSPDGKLLVIVGD-NPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGR-IFATGNQDKTCR 345 (448)
Q Consensus 269 ~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~-d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~-~l~s~~~d~~i~ 345 (448)
......+. |...|..++|+|+++.+++++. ++.+++|+...+..+..+.+|...+.+++|+|++. .+++++.|+.|+
T Consensus 145 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~ 224 (466)
T COG2319 145 GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIR 224 (466)
T ss_pred CeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEE
Confidence 56655555 8899999999999998888885 99999999999899999999999999999999998 666669999999
Q ss_pred EEEccCCCcceE-EEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCce-eeeeecCcCceEEEEEccCCCeEEEE
Q 013184 346 VWDVRNLSKSVA-VLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFE-KEQEIDFFGEISGMTFSPDTEALFIG 423 (448)
Q Consensus 346 iwd~~~~~~~~~-~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~-~~~~~~~~~~v~~~~fspdg~~L~~~ 423 (448)
+||... +..+. .+.+|.... ...|+|++.++++++.++.+++|++..... ......|...|.++.|+|++..++++
T Consensus 225 ~wd~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 302 (466)
T COG2319 225 LWDLST-GKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASG 302 (466)
T ss_pred EEECCC-CcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEe
Confidence 999874 56666 688888775 448999999999999999999999987665 33345678899999999999999998
Q ss_pred EecCC
Q 013184 424 VWDRT 428 (448)
Q Consensus 424 ~~D~~ 428 (448)
+.|+.
T Consensus 303 ~~d~~ 307 (466)
T COG2319 303 SSDGT 307 (466)
T ss_pred eCCCc
Confidence 88844
No 168
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.75 E-value=4.2e-17 Score=155.94 Aligned_cols=200 Identities=22% Similarity=0.264 Sum_probs=156.7
Q ss_pred EEEEecCCEEEE--EeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCce--
Q 013184 195 STLAVRDNLLIA--GGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQ-- 270 (448)
Q Consensus 195 ~~l~~~~~~lvs--g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~-- 270 (448)
..++.+...+++ .+.-|.|.|++++.++...-..+..-.++ ....++.|.|-+...|++++.||.|++|.+..+-
T Consensus 585 nGfcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ng-t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~ 663 (1012)
T KOG1445|consen 585 NGFCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNG-TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLP 663 (1012)
T ss_pred CceeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccC-ceeeecccCCCChHHeeecccCceEEEEEeccCCCC
Confidence 334445555544 46679999999998885433222222222 3456667799888899999999999999887532
Q ss_pred -----EEEEee-cCCCeeEEEECC-CCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCc
Q 013184 271 -----LSKHFS-FPWPVNHTSLSP-DGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKT 343 (448)
Q Consensus 271 -----~~~~~~-~~~~v~~~~~sp-~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~ 343 (448)
+...+. |...|.++.|+| ....|++++.|.+|++||+++++....|.+|.+.|+.++|+|+|+.+|+.+.||+
T Consensus 664 e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~ 743 (1012)
T KOG1445|consen 664 ENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGT 743 (1012)
T ss_pred cccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCce
Confidence 344455 888999999999 6678999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEccCCCcceEEEccCCC-CeEEEEEcCCCCEEEEEeCCC----eEEEEECCCC
Q 013184 344 CRVWDVRNLSKSVAVLKGNLG-AIRSIRFTSDGNFMAMAEPAD----FVHVYDAKNG 395 (448)
Q Consensus 344 i~iwd~~~~~~~~~~~~~~~~-~v~~l~~sp~g~~l~s~~~d~----~v~vwd~~~~ 395 (448)
|++|..+...+++..-++..+ .--.+.|.-+|+++++.+.|. .|.+||.++-
T Consensus 744 ~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l 800 (1012)
T KOG1445|consen 744 LRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTL 800 (1012)
T ss_pred EEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhc
Confidence 999999986677766554332 234577888999999988765 6888887653
No 169
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.75 E-value=4.2e-16 Score=136.45 Aligned_cols=219 Identities=13% Similarity=0.107 Sum_probs=163.3
Q ss_pred CEEEEEeCCCeEEEEEcCCCCceeEE------EeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceE----
Q 013184 202 NLLIAGGFQGELICKYLDQPGVSFCS------RTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQL---- 271 (448)
Q Consensus 202 ~~lvsg~~dg~i~vw~~~~~~~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~---- 271 (448)
.+|++.+ ..+++|.+.......+. ....+..+...+..| +.-..+++.++|-|-+..|||++++..
T Consensus 114 dlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDW--ne~dp~~igtSSiDTTCTiWdie~~~~~~vk 189 (364)
T KOG0290|consen 114 DLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDW--NEVDPNLIGTSSIDTTCTIWDIETGVSGTVK 189 (364)
T ss_pred chhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCccccccc--ccCCcceeEeecccCeEEEEEEeecccccee
Confidence 4555544 47999999854322111 112233444445444 555667999999999999999998732
Q ss_pred EEEeecCCCeeEEEECCCC-CEEEEEecCCcEEEEECCCCceeEeee---cCCCcEEEEEEcC-CCCEEEEEeCCC-cEE
Q 013184 272 SKHFSFPWPVNHTSLSPDG-KLLVIVGDNPEGILVDSQTGKAIMPLC---GHLDFSFASAWHP-DGRIFATGNQDK-TCR 345 (448)
Q Consensus 272 ~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~i~i~d~~~~~~~~~l~---~h~~~v~~~~~~p-~g~~l~s~~~d~-~i~ 345 (448)
.+.+.|...|..++|...+ +.+|++|.||.++++|++..+.-..+. ....+...++|++ |.+++||-..|+ .|.
T Consensus 190 TQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~ 269 (364)
T KOG0290|consen 190 TQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVV 269 (364)
T ss_pred eEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEE
Confidence 3445599999999999844 578899999999999998765433332 2256788899998 667888876654 699
Q ss_pred EEEccCCCcceEEEccCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCCceeee-----eecCcCceEEEEEcc-CCC
Q 013184 346 VWDVRNLSKSVAVLKGNLGAIRSIRFTSDG-NFMAMAEPADFVHVYDAKNGFEKEQ-----EIDFFGEISGMTFSP-DTE 418 (448)
Q Consensus 346 iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g-~~l~s~~~d~~v~vwd~~~~~~~~~-----~~~~~~~v~~~~fsp-dg~ 418 (448)
|.|+|.+..++..+.+|.+.|+.++|.|.. ..|.+|+.|..+.|||+.+...... .....++|..+.|+| .+.
T Consensus 270 iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~D 349 (364)
T KOG0290|consen 270 ILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPD 349 (364)
T ss_pred EEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCC
Confidence 999999999999999999999999999964 7899999999999999976433111 112457899999996 567
Q ss_pred eEEEEE
Q 013184 419 ALFIGV 424 (448)
Q Consensus 419 ~L~~~~ 424 (448)
.++++.
T Consensus 350 wiai~~ 355 (364)
T KOG0290|consen 350 WIAICF 355 (364)
T ss_pred EEEEEe
Confidence 888876
No 170
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.74 E-value=3.3e-16 Score=142.40 Aligned_cols=220 Identities=16% Similarity=0.245 Sum_probs=167.7
Q ss_pred eEEEEe---cCCEEEEEeCCCeEEEEEcCCCCcee----EEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEec
Q 013184 194 VSTLAV---RDNLLIAGGFQGELICKYLDQPGVSF----CSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDM 266 (448)
Q Consensus 194 i~~l~~---~~~~lvsg~~dg~i~vw~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~ 266 (448)
|..+++ +.+.+|+||.|.+|.||.+...+... ......+|...+..+.+ +|...+.|++++.|.+|.+|++
T Consensus 84 vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~w--HPtA~NVLlsag~Dn~v~iWnv 161 (472)
T KOG0303|consen 84 VLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQW--HPTAPNVLLSAGSDNTVSIWNV 161 (472)
T ss_pred ccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEee--cccchhhHhhccCCceEEEEec
Confidence 566666 88999999999999999998766322 23344566677777777 7888789999999999999999
Q ss_pred CCceEEEEeecCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCc-EEEEEEcCCCCEEEEEe---CCC
Q 013184 267 ERFQLSKHFSFPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDF-SFASAWHPDGRIFATGN---QDK 342 (448)
Q Consensus 267 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~-v~~~~~~p~g~~l~s~~---~d~ 342 (448)
.+++.+-++.|+..|.+++|+.+|.+|++.+.|..|+|||.++++.+..-.+|.+. -..+.|-.+|..+.||. .+.
T Consensus 162 ~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seR 241 (472)
T KOG0303|consen 162 GTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSER 241 (472)
T ss_pred cCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeecccccccc
Confidence 99999988999999999999999999999999999999999999999888778643 34566888898666653 467
Q ss_pred cEEEEEccCCCcceE--EEccCCCCeEEEEEcCCCCEEE-EEeCCCeEEEEECCCCceeeeeec---CcCceEEEEEccC
Q 013184 343 TCRVWDVRNLSKSVA--VLKGNLGAIRSIRFTSDGNFMA-MAEPADFVHVYDAKNGFEKEQEID---FFGEISGMTFSPD 416 (448)
Q Consensus 343 ~i~iwd~~~~~~~~~--~~~~~~~~v~~l~~sp~g~~l~-s~~~d~~v~vwd~~~~~~~~~~~~---~~~~v~~~~fspd 416 (448)
.+-+||..+...++. .+... +.|.---|.|+...|. +|-.|+.|+-|.+........... ...+-.++.|-|-
T Consensus 242 q~aLwdp~nl~eP~~~~elDtS-nGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mPK 320 (472)
T KOG0303|consen 242 QIALWDPNNLEEPIALQELDTS-NGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMPK 320 (472)
T ss_pred ceeccCcccccCcceeEEeccC-CceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCcccccccccc
Confidence 899999988766643 34333 3455555778777665 455789999999887653322222 2234456666663
No 171
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.74 E-value=6.9e-16 Score=152.88 Aligned_cols=237 Identities=14% Similarity=0.161 Sum_probs=176.2
Q ss_pred eeEEEEe---cCCEEEEEeCCCeEEEEEcCCCCce---eEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEec
Q 013184 193 QVSTLAV---RDNLLIAGGFQGELICKYLDQPGVS---FCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDM 266 (448)
Q Consensus 193 ~i~~l~~---~~~~lvsg~~dg~i~vw~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~ 266 (448)
.|.++.+ +.++|+.|..+|+|.+||+...... ........|...+..+.+..++.+ .-|++++.||.|..|++
T Consensus 244 ~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~-~~f~s~ssDG~i~~W~~ 322 (555)
T KOG1587|consen 244 EVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHN-TEFFSLSSDGSICSWDT 322 (555)
T ss_pred ceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCC-CceEEEecCCcEeeeec
Confidence 4777777 8899999999999999999877642 122334566777778888777776 57999999999999987
Q ss_pred CCceE------EE-------EeecCCCeeEEEECC-CCCEEEEEecCCcEEEEECCCCc--------eeEeeecCCCcEE
Q 013184 267 ERFQL------SK-------HFSFPWPVNHTSLSP-DGKLLVIVGDNPEGILVDSQTGK--------AIMPLCGHLDFSF 324 (448)
Q Consensus 267 ~~~~~------~~-------~~~~~~~v~~~~~sp-~~~~l~~~~~d~~i~i~d~~~~~--------~~~~l~~h~~~v~ 324 (448)
+.... .. .......+++++|.| +...+++|++.|.|.--+....+ ....+..|.++|.
T Consensus 323 ~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~ 402 (555)
T KOG1587|consen 323 DMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVY 402 (555)
T ss_pred cccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceE
Confidence 65322 11 111245688999998 77789999999999875433222 1234556889999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCCce--eeee
Q 013184 325 ASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDG-NFMAMAEPADFVHVYDAKNGFE--KEQE 401 (448)
Q Consensus 325 ~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g-~~l~s~~~d~~v~vwd~~~~~~--~~~~ 401 (448)
++.++|=+..+...+.|.+++||.-.....++..+..+...|++++|||.. ..++++..+|.|.|||+..... ....
T Consensus 403 ~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~ 482 (555)
T KOG1587|consen 403 AVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQ 482 (555)
T ss_pred eeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccc
Confidence 999999666544444499999999873477888888888889999999976 4677778899999999975432 2233
Q ss_pred ecCcCceEEEEEccCCCeEEEEEecCCcc
Q 013184 402 IDFFGEISGMTFSPDTEALFIGVWDRTYG 430 (448)
Q Consensus 402 ~~~~~~v~~~~fspdg~~L~~~~~D~~~~ 430 (448)
..+......+.|++.|+.|++|...|++.
T Consensus 483 ~~~~~~l~~~~~s~~g~~lavGd~~G~~~ 511 (555)
T KOG1587|consen 483 KVCSPALTRVRWSPNGKLLAVGDANGTTH 511 (555)
T ss_pred cccccccceeecCCCCcEEEEecCCCcEE
Confidence 33445567788899999999999886543
No 172
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=4.4e-17 Score=149.55 Aligned_cols=186 Identities=22% Similarity=0.267 Sum_probs=144.2
Q ss_pred EeCCCCCeeEEEEeCCCcEEEEecCCceEEEEe-ecCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeec--C
Q 013184 243 YNSPSGGIHFMASNNDCGVRDFDMERFQLSKHF-SFPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCG--H 319 (448)
Q Consensus 243 ~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~--h 319 (448)
.++.+|. .+++++.||++|||+....+.+... .|...|.++.|+|||++|++.+.+ ..+||+.++|..++.... .
T Consensus 151 af~~~gs-~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k 228 (398)
T KOG0771|consen 151 AFNGDGS-KLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSK 228 (398)
T ss_pred EEcCCCC-EeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCccc
Confidence 3477876 8999999999999997665544444 489999999999999999999999 999999999987776652 2
Q ss_pred CCcEEEEEEcCCC-----CEEEEEeCCCcEEEEEccCCCc----ceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 013184 320 LDFSFASAWHPDG-----RIFATGNQDKTCRVWDVRNLSK----SVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVY 390 (448)
Q Consensus 320 ~~~v~~~~~~p~g-----~~l~s~~~d~~i~iwd~~~~~~----~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vw 390 (448)
......|.|+.++ +.++....-+.|+.|++..+.. ...........|.+++.|++|+++|.|+.+|.|-|+
T Consensus 229 ~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~ 308 (398)
T KOG0771|consen 229 DEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIY 308 (398)
T ss_pred chhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEE
Confidence 2335567888777 3344444556788887754333 222222334579999999999999999999999999
Q ss_pred ECCCCceeeeee-cCcCceEEEEEccCCCeEEEEEecCCcc
Q 013184 391 DAKNGFEKEQEI-DFFGEISGMTFSPDTEALFIGVWDRTYG 430 (448)
Q Consensus 391 d~~~~~~~~~~~-~~~~~v~~~~fspdg~~L~~~~~D~~~~ 430 (448)
+..+.+.....+ .|.+.|+++.|+||.+++++-+.|....
T Consensus 309 ~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~ 349 (398)
T KOG0771|consen 309 DAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAA 349 (398)
T ss_pred EeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCcee
Confidence 998877765544 5889999999999999999877776543
No 173
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.73 E-value=5.1e-14 Score=137.89 Aligned_cols=265 Identities=26% Similarity=0.398 Sum_probs=191.6
Q ss_pred eeCCCCeEEEec-CCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEE---EecCC-EEEEEe-CCCeE
Q 013184 140 WSTSKHDVYLMS-HFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTL---AVRDN-LLIAGG-FQGEL 213 (448)
Q Consensus 140 ~~~~~~~v~~~~-~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l---~~~~~-~lvsg~-~dg~i 213 (448)
.......+...+ ++.+.+|+..... ..+..+.+... ..+..+ ..++. +++..+ .++.+
T Consensus 73 ~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~d~~~ 136 (466)
T COG2319 73 FSPDGELLLSGSSDGTIKLWDLDNGE-KLIKSLEGLHD---------------SSVSKLALSSPDGNSILLASSSLDGTV 136 (466)
T ss_pred ECCCCcEEEEecCCCcEEEEEcCCCc-eeEEEEeccCC---------------CceeeEEEECCCcceEEeccCCCCccE
Confidence 334444455444 7889999976654 12222222110 012222 23454 455544 49999
Q ss_pred EEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeC-CCcEEEEecCCceEEEEee-cCCCeeEEEECCCCC
Q 013184 214 ICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNN-DCGVRDFDMERFQLSKHFS-FPWPVNHTSLSPDGK 291 (448)
Q Consensus 214 ~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~-dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~ 291 (448)
.+|++...... ......+...+..+.+ +|++. .+++++. ++.+++|++..+..+..+. |...|.+++|+|++.
T Consensus 137 ~~~~~~~~~~~--~~~~~~~~~~v~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 211 (466)
T COG2319 137 KLWDLSTPGKL--IRTLEGHSESVTSLAF--SPDGK-LLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGG 211 (466)
T ss_pred EEEEecCCCeE--EEEEecCcccEEEEEE--CCCCC-EEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcc
Confidence 99999862211 2233344555555555 88887 6777775 9999999999877777777 789999999999998
Q ss_pred -EEEEEecCCcEEEEECCCCceeE-eeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEE
Q 013184 292 -LLVIVGDNPEGILVDSQTGKAIM-PLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSI 369 (448)
Q Consensus 292 -~l~~~~~d~~i~i~d~~~~~~~~-~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l 369 (448)
.+++++.++.+++||...+..+. .+.+|.... ...|+|++.++++++.++.+++|+++.....+..+.+|...+.++
T Consensus 212 ~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 290 (466)
T COG2319 212 LLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSV 290 (466)
T ss_pred eEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEE
Confidence 55555899999999999888888 688888876 448999999999999999999999986444355556788899999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCceeeeee--cCcCceEEEEEccCCCeEEEE-Eec
Q 013184 370 RFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEI--DFFGEISGMTFSPDTEALFIG-VWD 426 (448)
Q Consensus 370 ~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~--~~~~~v~~~~fspdg~~L~~~-~~D 426 (448)
.|+|++..+++++.++.+.+|++.+........ .|...+..+.|.+++..++.+ ..|
T Consensus 291 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 350 (466)
T COG2319 291 AFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDD 350 (466)
T ss_pred EECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCC
Confidence 999999999989889889999998887776665 677789999994343566666 455
No 174
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.73 E-value=1.3e-16 Score=139.53 Aligned_cols=216 Identities=16% Similarity=0.254 Sum_probs=162.8
Q ss_pred CCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCC-------CcEEEEecCCc---------eEEE
Q 013184 210 QGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNND-------CGVRDFDMERF---------QLSK 273 (448)
Q Consensus 210 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d-------g~v~iwd~~~~---------~~~~ 273 (448)
+.+|.+..++..+.....+...++.+.+..+.- +|.+..+|+++.++ -.+-||.+... +++.
T Consensus 39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las--~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~ 116 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLAS--SPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVA 116 (370)
T ss_pred cceeEEEEecCccchhhhhhhhcCCcceehhhc--CCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhh
Confidence 567777777766655545566677777777755 78888788887663 23678987532 2333
Q ss_pred Eee--cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCce-eEeee-----cCCCcEEEEEEcC--CCCEEEEEeCCCc
Q 013184 274 HFS--FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKA-IMPLC-----GHLDFSFASAWHP--DGRIFATGNQDKT 343 (448)
Q Consensus 274 ~~~--~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~-~~~l~-----~h~~~v~~~~~~p--~g~~l~s~~~d~~ 343 (448)
.+. +-+.|+|+.|.|++..+++.. +..|.+|++..+.. +..+. ++....++-+|+| +|+.+++. .|++
T Consensus 117 ~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~t 194 (370)
T KOG1007|consen 117 SLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDST 194 (370)
T ss_pred cCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCc
Confidence 443 456899999999999998776 67899999987765 33332 2566678889999 77888775 5789
Q ss_pred EEEEEccCCCcceEEEccCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCc-eeeeeecCcCceEEEEEccC-CCeE
Q 013184 344 CRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGN-FMAMAEPADFVHVYDAKNGF-EKEQEIDFFGEISGMTFSPD-TEAL 420 (448)
Q Consensus 344 i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~-~l~s~~~d~~v~vwd~~~~~-~~~~~~~~~~~v~~~~fspd-g~~L 420 (448)
++.||+|+..+....-.+|...|+.+.|+|+.+ +|++++.||.|+|||++..+ .+..+.+|.-.|+++.|+|. .+.|
T Consensus 195 l~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLi 274 (370)
T KOG1007|consen 195 LQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLI 274 (370)
T ss_pred EEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEE
Confidence 999999985555555567888999999999875 77889999999999998765 44667789999999999995 5677
Q ss_pred EEEEecCCc
Q 013184 421 FIGVWDRTY 429 (448)
Q Consensus 421 ~~~~~D~~~ 429 (448)
++|+.|..+
T Consensus 275 Ls~~SDs~V 283 (370)
T KOG1007|consen 275 LSGGSDSAV 283 (370)
T ss_pred EecCCCcee
Confidence 788888653
No 175
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.72 E-value=1.1e-15 Score=146.72 Aligned_cols=235 Identities=12% Similarity=0.084 Sum_probs=167.7
Q ss_pred eeEEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCce
Q 013184 193 QVSTLAV--RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQ 270 (448)
Q Consensus 193 ~i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~ 270 (448)
.|..+.+ ....||+++-|.++++|++...+..-. .+..+|.+.+..+++ .|.+...|++|+.||.|.|||++-..
T Consensus 102 AifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~-~~~~GH~~SvkS~cf--~~~n~~vF~tGgRDg~illWD~R~n~ 178 (720)
T KOG0321|consen 102 AIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGG-RLNLGHTGSVKSECF--MPTNPAVFCTGGRDGEILLWDCRCNG 178 (720)
T ss_pred eeEeeccCCCceeEEEccCCceeeeeeeccceeecc-eeecccccccchhhh--ccCCCcceeeccCCCcEEEEEEeccc
Confidence 5777777 557899999999999999998774332 245567777778877 78888899999999999999986422
Q ss_pred E--------------------EE--------EeecCCCeeE---EEECCCCCEEEEEec-CCcEEEEECCCCceeEe---
Q 013184 271 L--------------------SK--------HFSFPWPVNH---TSLSPDGKLLVIVGD-NPEGILVDSQTGKAIMP--- 315 (448)
Q Consensus 271 ~--------------------~~--------~~~~~~~v~~---~~~sp~~~~l~~~~~-d~~i~i~d~~~~~~~~~--- 315 (448)
. .+ ...+...|.+ +.+..|...||+++. |+.|++||++.......
T Consensus 179 ~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep 258 (720)
T KOG0321|consen 179 VDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEP 258 (720)
T ss_pred hhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCC
Confidence 0 00 0012223444 445567888998887 99999999987654322
Q ss_pred -----eecC---CCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCC-cceEEEccCCCC--eEEEEEcCCCCEEEEEeCC
Q 013184 316 -----LCGH---LDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLS-KSVAVLKGNLGA--IRSIRFTSDGNFMAMAEPA 384 (448)
Q Consensus 316 -----l~~h---~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~--v~~l~~sp~g~~l~s~~~d 384 (448)
+..| .-.+.++.....|.+|...+.|++|..|+++..+ .++..+.++... -..-..+|++.+|++|+.|
T Consensus 259 ~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd 338 (720)
T KOG0321|consen 259 RGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSD 338 (720)
T ss_pred CcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCC
Confidence 2223 3356778888888988888889999999998643 344444444321 1122468999999999999
Q ss_pred CeEEEEECCCCcee-eeeecCcCceEEEEEccCC-CeEEEEEecCCcc
Q 013184 385 DFVHVYDAKNGFEK-EQEIDFFGEISGMTFSPDT-EALFIGVWDRTYG 430 (448)
Q Consensus 385 ~~v~vwd~~~~~~~-~~~~~~~~~v~~~~fspdg-~~L~~~~~D~~~~ 430 (448)
...++|.+.+.+.. ..+.+|.-+|+.++|.|.. .-+++++.|.++.
T Consensus 339 ~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~k 386 (720)
T KOG0321|consen 339 EQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVK 386 (720)
T ss_pred cceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceE
Confidence 99999999886644 4466799999999998842 3455667775543
No 176
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.71 E-value=3.4e-16 Score=138.94 Aligned_cols=217 Identities=18% Similarity=0.269 Sum_probs=167.1
Q ss_pred CCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeEEEe
Q 013184 152 HFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQGELICKYLDQPGVSFCSRT 229 (448)
Q Consensus 152 ~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~ 229 (448)
+.-|++||..+++.......-.|... +. .-.+|.| +|..|++| ....|+++++..++.......
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de-----------~t--aAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~ 197 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDE-----------YT--AAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYT 197 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHh-----------hh--hheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchh
Confidence 34599999999888877655544431 11 2345555 88888876 567899999987774332222
Q ss_pred e-----cCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee-cCCCeeEEEECCCCCEEEEEec-CCcE
Q 013184 230 T-----YDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS-FPWPVNHTSLSPDGKLLVIVGD-NPEG 302 (448)
Q Consensus 230 ~-----~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~-d~~i 302 (448)
+ ....+++.++++ +|-....++.++.-..+-|+.-..+.++..+. |.+.|+.+.|.++|+.|++|.. +..|
T Consensus 198 t~~~~k~gq~giisc~a~--sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkI 275 (406)
T KOG2919|consen 198 TVTKGKFGQKGIISCFAF--SPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKI 275 (406)
T ss_pred hhhcccccccceeeeeec--cCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeE
Confidence 2 233566666655 88887789999999999999888888877776 9999999999999999999974 6689
Q ss_pred EEEECCCC-ceeEeeecCCC-cEEE--EEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEE
Q 013184 303 ILVDSQTG-KAIMPLCGHLD-FSFA--SAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFM 378 (448)
Q Consensus 303 ~i~d~~~~-~~~~~l~~h~~-~v~~--~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l 378 (448)
..||++.. .++..|..|.+ .-.. ....|.|++|++|+.+|.|++||+...+..+..+..+...++.++++|--..+
T Consensus 276 l~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpil 355 (406)
T KOG2919|consen 276 LCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPIL 355 (406)
T ss_pred EEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCccccee
Confidence 99999864 45667777765 2223 45568999999999999999999998788888999999999999999998888
Q ss_pred EEEeCC
Q 013184 379 AMAEPA 384 (448)
Q Consensus 379 ~s~~~d 384 (448)
|+++..
T Consensus 356 atssGq 361 (406)
T KOG2919|consen 356 ATSSGQ 361 (406)
T ss_pred eeccCc
Confidence 887654
No 177
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.71 E-value=1.4e-15 Score=133.15 Aligned_cols=238 Identities=13% Similarity=0.214 Sum_probs=169.3
Q ss_pred ccccceeeeCCCC----eEEEecCCeEEEEecCCC--ceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe---cCCE
Q 013184 133 FQLRNLVWSTSKH----DVYLMSHFSIVHWSSLSS--KRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV---RDNL 203 (448)
Q Consensus 133 fq~r~l~~~~~~~----~v~~~~~~~v~~w~~~~~--~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~---~~~~ 203 (448)
|....++|.|+.. +++.+++..+++|..... .......+..+... -...+++++.+ +.++
T Consensus 97 YP~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns-----------~~~aPlTSFDWne~dp~~ 165 (364)
T KOG0290|consen 97 YPVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNS-----------EFCAPLTSFDWNEVDPNL 165 (364)
T ss_pred CCccceEecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCccc-----------ccCCcccccccccCCcce
Confidence 3456678887764 455667888999997632 22222223322221 12236888888 7899
Q ss_pred EEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEe---ec-CC
Q 013184 204 LIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHF---SF-PW 279 (448)
Q Consensus 204 lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~---~~-~~ 279 (448)
+.+++-|-+..||++.++..-......-.|...+.-++| ...+...|++.+.||.||+||++..+-...+ .. ..
T Consensus 166 igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf--~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~ 243 (364)
T KOG0290|consen 166 IGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAF--LKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPST 243 (364)
T ss_pred eEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEe--ccCccceEEEecCCCcEEEEEecccccceEEecCCCCCC
Confidence 999999999999999986321112223345555566666 6677779999999999999999875432222 22 56
Q ss_pred CeeEEEECC-CCCEEEEEe-cCCcEEEEECCCC-ceeEeeecCCCcEEEEEEcCC-CCEEEEEeCCCcEEEEEccCCCc-
Q 013184 280 PVNHTSLSP-DGKLLVIVG-DNPEGILVDSQTG-KAIMPLCGHLDFSFASAWHPD-GRIFATGNQDKTCRVWDVRNLSK- 354 (448)
Q Consensus 280 ~v~~~~~sp-~~~~l~~~~-~d~~i~i~d~~~~-~~~~~l~~h~~~v~~~~~~p~-g~~l~s~~~d~~i~iwd~~~~~~- 354 (448)
+...++|++ +.+++|+.. +...|.|.|++.. .++..|++|.+.|..++|.|. ...|+|++.|..+.|||+.....
T Consensus 244 pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~ 323 (364)
T KOG0290|consen 244 PLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRE 323 (364)
T ss_pred cceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccccccc
Confidence 788899998 667777765 4568999999875 468889999999999999995 56999999999999999975332
Q ss_pred ----ceEEEccCCCCeEEEEEcC-CCCEEEEEeCC
Q 013184 355 ----SVAVLKGNLGAIRSIRFTS-DGNFMAMAEPA 384 (448)
Q Consensus 355 ----~~~~~~~~~~~v~~l~~sp-~g~~l~s~~~d 384 (448)
++.... ..+.|+.+.|+| .+.+++.+...
T Consensus 324 ~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 324 NGEDPILAYT-AGGEVNQIQWSSSQPDWIAICFGK 357 (364)
T ss_pred CCCCchhhhh-ccceeeeeeecccCCCEEEEEecC
Confidence 233333 456899999996 45788887654
No 178
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=2.2e-16 Score=149.59 Aligned_cols=255 Identities=14% Similarity=0.137 Sum_probs=177.5
Q ss_pred Ccccccc-cceeeeCCCCeEEEec-CCeEEEEecC------CCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe-
Q 013184 129 TILHFQL-RNLVWSTSKHDVYLMS-HFSIVHWSSL------SSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV- 199 (448)
Q Consensus 129 ~~~hfq~-r~l~~~~~~~~v~~~~-~~~v~~w~~~------~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~- 199 (448)
...|++. |.+...++...++.++ ++.+++|++. ......++.+.+|..| |.|+++
T Consensus 290 l~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gP----------------Vl~v~v~ 353 (577)
T KOG0642|consen 290 LRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGP----------------VLCVVVP 353 (577)
T ss_pred eecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCc----------------eEEEEec
Confidence 3455554 4455556666666665 6679999982 2345678899999987 788877
Q ss_pred -cCCEEEEEeCCCeEEEEEcCCCC-------ceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceE
Q 013184 200 -RDNLLIAGGFQGELICKYLDQPG-------VSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQL 271 (448)
Q Consensus 200 -~~~~lvsg~~dg~i~vw~~~~~~-------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~ 271 (448)
++..+++||-||+|++|++.... .........+|...++.+.+ ++... .|++++.||+||+|.......
T Consensus 354 ~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~--s~~~~-~Llscs~DgTvr~w~~~~~~~ 430 (577)
T KOG0642|consen 354 SNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLAL--SSTKD-RLLSCSSDGTVRLWEPTEESP 430 (577)
T ss_pred CCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeee--ccccc-ceeeecCCceEEeeccCCcCc
Confidence 88999999999999999775222 11112233345555555555 44433 699999999999999876665
Q ss_pred EEEee---cCCCeeEEEECCCC-CEEEEEecCCcEEEEECCCCceeEeeec-------CCCcEEEEEEcCCCCEEEEEeC
Q 013184 272 SKHFS---FPWPVNHTSLSPDG-KLLVIVGDNPEGILVDSQTGKAIMPLCG-------HLDFSFASAWHPDGRIFATGNQ 340 (448)
Q Consensus 272 ~~~~~---~~~~v~~~~~sp~~-~~l~~~~~d~~i~i~d~~~~~~~~~l~~-------h~~~v~~~~~~p~g~~l~s~~~ 340 (448)
.+|. ..+...++.+-... ...++...-+.-.+.+...++.+..+.. -...+..+.++|.+...+++-.
T Consensus 431 -~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~he 509 (577)
T KOG0642|consen 431 -CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHE 509 (577)
T ss_pred -cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEeccc
Confidence 3333 22333455543322 2333333334444555555555544432 1244677899999999999999
Q ss_pred CCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecC
Q 013184 341 DKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDF 404 (448)
Q Consensus 341 d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~ 404 (448)
|+.|+++|..+ +.+++....|...++++++.|+|.+|++++.|+.|++|.+....++.....|
T Consensus 510 d~~Ir~~dn~~-~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~ 572 (577)
T KOG0642|consen 510 DRSIRFFDNKT-GKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH 572 (577)
T ss_pred CCceecccccc-cccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence 99999999977 8899999999999999999999999999999999999998776555444444
No 179
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=3.2e-15 Score=148.36 Aligned_cols=211 Identities=16% Similarity=0.120 Sum_probs=144.3
Q ss_pred CCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeC--CCcEEEEecCCceEEEEeecCCCeeEEEEC
Q 013184 210 QGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNN--DCGVRDFDMERFQLSKHFSFPWPVNHTSLS 287 (448)
Q Consensus 210 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~--dg~v~iwd~~~~~~~~~~~~~~~v~~~~~s 287 (448)
+.+|.+|+.+..... .+. .+...+....| +|+|..++.++.. +..|++||+.+++........+....++|+
T Consensus 183 ~~~i~i~d~dg~~~~---~lt-~~~~~v~~p~w--SPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wS 256 (429)
T PRK01742 183 PYEVRVADYDGFNQF---IVN-RSSQPLMSPAW--SPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFS 256 (429)
T ss_pred eEEEEEECCCCCCce---Eec-cCCCccccceE--cCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeEC
Confidence 478999998765532 222 23344445554 9999844443332 246999999987654443344555678999
Q ss_pred CCCCEEEEEe-cCCcEEE--EECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEe-CCCcEEEEEccCCCcceEEEccCC
Q 013184 288 PDGKLLVIVG-DNPEGIL--VDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGN-QDKTCRVWDVRNLSKSVAVLKGNL 363 (448)
Q Consensus 288 p~~~~l~~~~-~d~~i~i--~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~ 363 (448)
|+|+.|++++ .++.+.| ||+.+++ +..+..+...+...+|+|||+.|+.++ .++..+||++...+.....+ .+.
T Consensus 257 PDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~ 334 (429)
T PRK01742 257 PDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGR 334 (429)
T ss_pred CCCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCC
Confidence 9999988765 5776554 5766665 445666777788899999999777554 67889999886534434334 333
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEecCCcceEE
Q 013184 364 GAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDRTYGSLL 433 (448)
Q Consensus 364 ~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~~~~ll 433 (448)
+ .++.|+|+|++|++++.++ +.+||+.++.... +... ....+++|+|||+.|+.++.++....+.
T Consensus 335 ~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~-lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~ 399 (429)
T PRK01742 335 G--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEV-LSST-FLDESPSISPNGIMIIYSSTQGLGKVLQ 399 (429)
T ss_pred C--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEE-ecCC-CCCCCceECCCCCEEEEEEcCCCceEEE
Confidence 3 4578999999999888765 6669998886542 2222 2345788999999999999888765443
No 180
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=2.9e-15 Score=148.58 Aligned_cols=210 Identities=17% Similarity=0.131 Sum_probs=143.3
Q ss_pred eEEEEe--cCCEEEEEeCC---CeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEE--ec
Q 013184 194 VSTLAV--RDNLLIAGGFQ---GELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDF--DM 266 (448)
Q Consensus 194 i~~l~~--~~~~lvsg~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iw--d~ 266 (448)
+.+.++ +++.|+..+.+ ..|.+|++.+......... .+..... .++|+|..++++.+.+|.+.|| |+
T Consensus 206 v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~----~g~~~~~--~wSPDG~~La~~~~~~g~~~Iy~~d~ 279 (429)
T PRK01742 206 LMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASF----RGHNGAP--AFSPDGSRLAFASSKDGVLNIYVMGA 279 (429)
T ss_pred cccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecC----CCccCce--eECCCCCEEEEEEecCCcEEEEEEEC
Confidence 444444 88888887654 3699999976553222111 1222234 4599998555556678876555 67
Q ss_pred CCceEEEEeecCCCeeEEEECCCCCEEEEEe-cCCcEEEEECCCC-ceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcE
Q 013184 267 ERFQLSKHFSFPWPVNHTSLSPDGKLLVIVG-DNPEGILVDSQTG-KAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTC 344 (448)
Q Consensus 267 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~i~i~d~~~~-~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i 344 (448)
.+++......+...+....|+|+|+.|+.++ .++...||++... .....+ ++.. ...+|+|+|++|+.++.++ +
T Consensus 280 ~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i 355 (429)
T PRK01742 280 NGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMINGDN-V 355 (429)
T ss_pred CCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCCC-E
Confidence 7776655555667788999999999887665 4677777765432 222333 3443 4578999999998888765 5
Q ss_pred EEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC--CCCceeeeeecCcCceEEEEEccC
Q 013184 345 RVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDA--KNGFEKEQEIDFFGEISGMTFSPD 416 (448)
Q Consensus 345 ~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~--~~~~~~~~~~~~~~~v~~~~fspd 416 (448)
.+||+.+ +... .+... ....++.|+|+|++|++++.++.+.+|.+ .+|.....+..|.+.+..++|+|-
T Consensus 356 ~~~Dl~~-g~~~-~lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 356 VKQDLTS-GSTE-VLSST-FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred EEEECCC-CCeE-EecCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 5699875 3332 23222 13356789999999999999988887775 357777778788888999999984
No 181
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=1.3e-15 Score=145.06 Aligned_cols=198 Identities=18% Similarity=0.322 Sum_probs=156.6
Q ss_pred eEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEeecCCCeeEEEECCCCC--EEEEEecCCcE
Q 013184 225 FCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFSFPWPVNHTSLSPDGK--LLVIVGDNPEG 302 (448)
Q Consensus 225 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~--~l~~~~~d~~i 302 (448)
.|.....+|.+.+.++.+ .|.|. .|++|+.||+||||.+.+|.+++++...+.|.|++|+|.+. .||++-.. .+
T Consensus 391 ~~~lvyrGHtg~Vr~iSv--dp~G~-wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~-~~ 466 (733)
T KOG0650|consen 391 RCALVYRGHTGLVRSISV--DPSGE-WLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGE-CV 466 (733)
T ss_pred eeeeeEeccCCeEEEEEe--cCCcc-eeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecC-ce
Confidence 345566788888888888 78776 99999999999999999999999999999999999999654 34444333 35
Q ss_pred EEEECCCCc-------------------------------------eeEeeecCCCcEEEEEEcCCCCEEEEEeCC---C
Q 013184 303 ILVDSQTGK-------------------------------------AIMPLCGHLDFSFASAWHPDGRIFATGNQD---K 342 (448)
Q Consensus 303 ~i~d~~~~~-------------------------------------~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d---~ 342 (448)
.|.+..-|. -++..-.|...|..+.||..|.||++...+ .
T Consensus 467 ~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~ 546 (733)
T KOG0650|consen 467 LIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNK 546 (733)
T ss_pred EEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcc
Confidence 555432220 011222477889999999999999998764 4
Q ss_pred cEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEE
Q 013184 343 TCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFI 422 (448)
Q Consensus 343 ~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~ 422 (448)
.|.|.++.. ......+....+.|.++.|+|...+|++++.. .|+|||+.....+..+......|.+++.+|.|.-|++
T Consensus 547 ~VliHQLSK-~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~-~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~ 624 (733)
T KOG0650|consen 547 SVLIHQLSK-RKSQSPFRKSKGLVQRVKFHPSKPYLFVATQR-SVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLIL 624 (733)
T ss_pred eEEEEeccc-ccccCchhhcCCceeEEEecCCCceEEEEecc-ceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEE
Confidence 688999865 44445565667789999999999999998765 6999999987777777777788999999999999999
Q ss_pred EEecCC
Q 013184 423 GVWDRT 428 (448)
Q Consensus 423 ~~~D~~ 428 (448)
|+.|+.
T Consensus 625 gs~d~k 630 (733)
T KOG0650|consen 625 GSYDKK 630 (733)
T ss_pred ecCCCe
Confidence 999965
No 182
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.70 E-value=3.8e-16 Score=142.51 Aligned_cols=193 Identities=21% Similarity=0.318 Sum_probs=149.6
Q ss_pred eecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCce---------EEEEee-cCCCeeEEEECCCCCEEEEEec
Q 013184 229 TTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQ---------LSKHFS-FPWPVNHTSLSPDGKLLVIVGD 298 (448)
Q Consensus 229 ~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~---------~~~~~~-~~~~v~~~~~sp~~~~l~~~~~ 298 (448)
+..|....+..+.+ .++....+++|+.|..|++|-++... .+..+. |...|+++.|+|+|.+||+|++
T Consensus 8 i~wH~~~pv~s~df--q~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D 85 (434)
T KOG1009|consen 8 ISWHDHEPVYSVDF--QKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGD 85 (434)
T ss_pred EEecCCCceEEEEe--ccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCC
Confidence 33344555566666 44444489999999999999876432 122233 8899999999999999999999
Q ss_pred CCcEEEEECC--------C--------CceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccC
Q 013184 299 NPEGILVDSQ--------T--------GKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGN 362 (448)
Q Consensus 299 d~~i~i~d~~--------~--------~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 362 (448)
+|.|.+|-.. + ......+.+|...+..++|+|+++++++++.|.++++||+.. +..+..+..|
T Consensus 86 ~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~-G~l~~~~~dh 164 (434)
T KOG1009|consen 86 GGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHA-GQLLAILDDH 164 (434)
T ss_pred CceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEecc-ceeEeecccc
Confidence 9999999755 2 123456778999999999999999999999999999999987 8899999999
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeee--------c-----------Cc----CceEEEEEccCCCe
Q 013184 363 LGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEI--------D-----------FF----GEISGMTFSPDTEA 419 (448)
Q Consensus 363 ~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~--------~-----------~~----~~v~~~~fspdg~~ 419 (448)
...+..++|.|-++++++-+.|...+++.+.......... . |. .-...++|+|+|..
T Consensus 165 ~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~l 244 (434)
T KOG1009|consen 165 EHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSL 244 (434)
T ss_pred ccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcE
Confidence 9999999999999999999988877777765433221111 0 11 12446899999999
Q ss_pred EEEEE
Q 013184 420 LFIGV 424 (448)
Q Consensus 420 L~~~~ 424 (448)
|++..
T Consensus 245 lvtPa 249 (434)
T KOG1009|consen 245 LVTPA 249 (434)
T ss_pred EEccc
Confidence 99763
No 183
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.70 E-value=3.5e-16 Score=135.22 Aligned_cols=231 Identities=14% Similarity=0.093 Sum_probs=165.5
Q ss_pred eeEEEEe-cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceE
Q 013184 193 QVSTLAV-RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQL 271 (448)
Q Consensus 193 ~i~~l~~-~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~ 271 (448)
.|+++.+ ...+|.+|..-|.|.+|.+.+....... ...+...+..+.. -|++ .+.+-+.|+.+.+|++.....
T Consensus 16 ~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~--r~~g~~~it~lq~--~p~d--~l~tqgRd~~L~lw~ia~s~~ 89 (323)
T KOG0322|consen 16 SVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLI--RLFGRLFITNLQS--IPND--SLDTQGRDPLLILWTIAYSAF 89 (323)
T ss_pred hheehhhccchhhhcccccceEEEEEeecCccchhh--hhhccceeeceee--cCCc--chhhcCCCceEEEEEccCcce
Confidence 4778877 4567999999999999999887644222 2123333333333 3543 578888899999998765221
Q ss_pred EEE-------------------------ee-----------------------------cCCCeeEEEECC-CCC--EEE
Q 013184 272 SKH-------------------------FS-----------------------------FPWPVNHTSLSP-DGK--LLV 294 (448)
Q Consensus 272 ~~~-------------------------~~-----------------------------~~~~v~~~~~sp-~~~--~l~ 294 (448)
+.. .. ..+.+.|..+.. +++ +++
T Consensus 90 i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lll 169 (323)
T KOG0322|consen 90 ISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLL 169 (323)
T ss_pred EEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEE
Confidence 100 00 012244444322 233 455
Q ss_pred EEecCCcEEEEECCCCce----------eEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcce---EEEcc
Q 013184 295 IVGDNPEGILVDSQTGKA----------IMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSV---AVLKG 361 (448)
Q Consensus 295 ~~~~d~~i~i~d~~~~~~----------~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~---~~~~~ 361 (448)
+|-.+|.+.+||+.++.. +.....|..+|.++.+.+.-..=++|+.+..+..|.+......+ ..++-
T Consensus 170 aGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~l 249 (323)
T KOG0322|consen 170 AGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITL 249 (323)
T ss_pred EeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEe
Confidence 677899999999999833 33344689999999999866666778888889999986422211 22222
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEecCCc
Q 013184 362 NLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDRTY 429 (448)
Q Consensus 362 ~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~~ 429 (448)
..-.|..+..-||++.+|+|+.|+.|+||+.++...+..+..|.+.|.+++|+|+...+|+++.|.++
T Consensus 250 knpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rI 317 (323)
T KOG0322|consen 250 KNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARI 317 (323)
T ss_pred cCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceE
Confidence 33457888999999999999999999999999999999999999999999999999999999999764
No 184
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=3.3e-15 Score=133.65 Aligned_cols=231 Identities=14% Similarity=0.138 Sum_probs=165.0
Q ss_pred CEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee---cC
Q 013184 202 NLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS---FP 278 (448)
Q Consensus 202 ~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~---~~ 278 (448)
..+|++-..|+|++|+..+.+.. .....+...++.+.|.... +.+.+.+|+.||+|++||++.......+. ++
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l---~~fk~~~~~~N~vrf~~~d-s~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~ 116 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLL---EEFKGPPATTNGVRFISCD-SPHGVISCSSDGTVRLWDIRSQAESARISWTQQS 116 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhh---heecCCCCcccceEEecCC-CCCeeEEeccCCeEEEEEeecchhhhheeccCCC
Confidence 67889999999999999986543 2233455566777775432 45579999999999999999876555444 33
Q ss_pred -CCeeEEEECCCCCEEEEEe----cCCcEEEEECCCCce-eEee-ecCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEEcc
Q 013184 279 -WPVNHTSLSPDGKLLVIVG----DNPEGILVDSQTGKA-IMPL-CGHLDFSFASAWHP-DGRIFATGNQDKTCRVWDVR 350 (448)
Q Consensus 279 -~~v~~~~~sp~~~~l~~~~----~d~~i~i~d~~~~~~-~~~l-~~h~~~v~~~~~~p-~g~~l~s~~~d~~i~iwd~~ 350 (448)
.+..|++.+-.++.+++|. .+-.|.+||.+..+. +..+ ..|.+.|+++.|+| +.++|++|+.||-|.|+|+.
T Consensus 117 ~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~ 196 (376)
T KOG1188|consen 117 GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTK 196 (376)
T ss_pred CCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecC
Confidence 5677888777788888875 466899999998776 5443 56999999999999 66899999999999999997
Q ss_pred CCCc--ceEEEccCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCCceeeeeecC------------cCceEEEEEcc
Q 013184 351 NLSK--SVAVLKGNLGAIRSIRFTSDG-NFMAMAEPADFVHVYDAKNGFEKEQEIDF------------FGEISGMTFSP 415 (448)
Q Consensus 351 ~~~~--~~~~~~~~~~~v~~l~~sp~g-~~l~s~~~d~~v~vwd~~~~~~~~~~~~~------------~~~v~~~~fsp 415 (448)
.... .+.....+...|.++.|..++ +.|.+-+......+|++..+.....+... ...+-.....-
T Consensus 197 ~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~ 276 (376)
T KOG1188|consen 197 KDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPG 276 (376)
T ss_pred CCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCC
Confidence 5321 233333477789999999887 45777788889999999887644332211 11222322233
Q ss_pred CCCeEEEEEecCCcceEEEEe
Q 013184 416 DTEALFIGVWDRTYGSLLQYN 436 (448)
Q Consensus 416 dg~~L~~~~~D~~~~~ll~~~ 436 (448)
++..+++++.|..-+.++.+.
T Consensus 277 ~~~~~~l~g~~~n~~~~~~~~ 297 (376)
T KOG1188|consen 277 DKDTCALAGTDSNKGTIFPLV 297 (376)
T ss_pred CcceEEEeccccCceeEEEee
Confidence 556666776665555555544
No 185
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.70 E-value=2.5e-15 Score=133.41 Aligned_cols=230 Identities=12% Similarity=0.134 Sum_probs=175.1
Q ss_pred eeEEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEec-CCc
Q 013184 193 QVSTLAV--RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDM-ERF 269 (448)
Q Consensus 193 ~i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~-~~~ 269 (448)
+|+|.++ +...++++....+|.|+.......-........|..+++.++| .|..+ .|++|+.|..-++|.. ..+
T Consensus 12 pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdW--ap~sn-rIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 12 PITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDW--APKSN-RIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred ceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEee--cCCCC-ceeEccCCCCccccccCCCC
Confidence 6899999 7788999999999999998887754456677788889999888 77765 8999999999999998 555
Q ss_pred eEEE---EeecCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCcee----EeeecCCCcEEEEEEcCCCCEEEEEeCCC
Q 013184 270 QLSK---HFSFPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAI----MPLCGHLDFSFASAWHPDGRIFATGNQDK 342 (448)
Q Consensus 270 ~~~~---~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~----~~l~~h~~~v~~~~~~p~g~~l~s~~~d~ 342 (448)
+... .+++...++++.|+|..++||+|+.-..|.+|-.+....- +.-+.+...|.+++|+|++-+++.|+.|+
T Consensus 89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~ 168 (361)
T KOG1523|consen 89 TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDG 168 (361)
T ss_pred eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCc
Confidence 5433 3348999999999999999999999999999877654322 12234678899999999999999999999
Q ss_pred cEEEEEccC-----------------CCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCcee-eeeecC
Q 013184 343 TCRVWDVRN-----------------LSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEK-EQEIDF 404 (448)
Q Consensus 343 ~i~iwd~~~-----------------~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~-~~~~~~ 404 (448)
.+|++..-- .+..+..+....+.|..+.|+|+|..|+-.+.|..|.+-|.....+. ......
T Consensus 169 k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~ 248 (361)
T KOG1523|consen 169 KCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATA 248 (361)
T ss_pred ceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhc
Confidence 999997521 01223344455678999999999999999999999999997665422 222222
Q ss_pred cCceEEEEEccCCCeEEEEEec
Q 013184 405 FGEISGMTFSPDTEALFIGVWD 426 (448)
Q Consensus 405 ~~~v~~~~fspdg~~L~~~~~D 426 (448)
.-+..++.|-.+. .++.+++|
T Consensus 249 ~lP~ls~~~ise~-~vv~ag~~ 269 (361)
T KOG1523|consen 249 QLPLLSVSWISEN-SVVAAGYD 269 (361)
T ss_pred cCCceeeEeecCC-ceeecCCC
Confidence 2455666665543 34444444
No 186
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=1.1e-14 Score=124.64 Aligned_cols=216 Identities=14% Similarity=0.188 Sum_probs=155.8
Q ss_pred EEEecCCEEEEEeCCCeEEEEEcCCCC-------ceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCC
Q 013184 196 TLAVRDNLLIAGGFQGELICKYLDQPG-------VSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMER 268 (448)
Q Consensus 196 ~l~~~~~~lvsg~~dg~i~vw~~~~~~-------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~ 268 (448)
+++..+++|++|..+|.|.+..+..-. .+........|.+.++.+.+. ..+|++|+ ||.|+-|....
T Consensus 17 a~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~-----d~~Lls~g-dG~V~gw~W~E 90 (325)
T KOG0649|consen 17 AISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH-----DDFLLSGG-DGLVYGWEWNE 90 (325)
T ss_pred hhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee-----hhheeecc-CceEEEeeehh
Confidence 445578899999999999999886321 111222335677888888773 22666666 59999886543
Q ss_pred ceE------EEEee--------cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCE
Q 013184 269 FQL------SKHFS--------FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRI 334 (448)
Q Consensus 269 ~~~------~~~~~--------~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~ 334 (448)
... +.... .--.|+++...|..+.+++++.|+.++-||+++|+..+.++||++++.++.-......
T Consensus 91 ~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~q 170 (325)
T KOG0649|consen 91 EEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQ 170 (325)
T ss_pred hhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcc
Confidence 211 11111 1235899999998888888889999999999999999999999999999998555567
Q ss_pred EEEEeCCCcEEEEEccCCCcceEEEccCC----------CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecC
Q 013184 335 FATGNQDKTCRVWDVRNLSKSVAVLKGNL----------GAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDF 404 (448)
Q Consensus 335 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~----------~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~ 404 (448)
+++|+.||++|+||.++ .+++..+.... ..|-+++- +..+|++|+.- .+.+|++++.+....+ ..
T Consensus 171 ilsG~EDGtvRvWd~kt-~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgGp-~lslwhLrsse~t~vf-pi 245 (325)
T KOG0649|consen 171 ILSGAEDGTVRVWDTKT-QKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGGP-KLSLWHLRSSESTCVF-PI 245 (325)
T ss_pred eeecCCCccEEEEeccc-cceeEEeccccChhhcCcccCceeEEEec--cCceEEecCCC-ceeEEeccCCCceEEE-ec
Confidence 99999999999999987 77777665322 23555554 45688887654 5999999987766544 35
Q ss_pred cCceEEEEEccCCCeEEEEE
Q 013184 405 FGEISGMTFSPDTEALFIGV 424 (448)
Q Consensus 405 ~~~v~~~~fspdg~~L~~~~ 424 (448)
.+++..+.|..| .+++++
T Consensus 246 pa~v~~v~F~~d--~vl~~G 263 (325)
T KOG0649|consen 246 PARVHLVDFVDD--CVLIGG 263 (325)
T ss_pred ccceeEeeeecc--eEEEec
Confidence 677888888754 344444
No 187
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.68 E-value=7e-16 Score=145.31 Aligned_cols=165 Identities=20% Similarity=0.292 Sum_probs=132.3
Q ss_pred eeEEEEeCCCcEEEEecCCceEEEEee-----cCCCeeEEEECC-CCCEEEEEecCCcEEEEECCC--------------
Q 013184 250 IHFMASNNDCGVRDFDMERFQLSKHFS-----FPWPVNHTSLSP-DGKLLVIVGDNPEGILVDSQT-------------- 309 (448)
Q Consensus 250 ~~l~s~s~dg~v~iwd~~~~~~~~~~~-----~~~~v~~~~~sp-~~~~l~~~~~d~~i~i~d~~~-------------- 309 (448)
.-++.|-.-|.|.+.|....+..+.+. ....|+|+.|-| +..+++++..+|.+.++|...
T Consensus 186 ~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~ 265 (636)
T KOG2394|consen 186 LDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKD 265 (636)
T ss_pred cceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCC
Confidence 356777778889988876544333232 347799999999 556777888999999997531
Q ss_pred Cc--------------eeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCC
Q 013184 310 GK--------------AIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDG 375 (448)
Q Consensus 310 ~~--------------~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g 375 (448)
+. ++..+.--.+.|...+|+|||++||+.++||.+||+|..+ .+.+..++..-+...|++|||||
T Consensus 266 ~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt-~eLlg~mkSYFGGLLCvcWSPDG 344 (636)
T KOG2394|consen 266 GDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDT-QELLGVMKSYFGGLLCVCWSPDG 344 (636)
T ss_pred CCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccH-HHHHHHHHhhccceEEEEEcCCc
Confidence 11 1111222235678899999999999999999999999976 66667777777899999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEcc
Q 013184 376 NFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSP 415 (448)
Q Consensus 376 ~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fsp 415 (448)
+||++|+.|..|.||.+...+.+..-.+|.++|+.++|.|
T Consensus 345 KyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 345 KYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred cEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 9999999999999999999999999999999999999997
No 188
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.68 E-value=1.9e-15 Score=142.35 Aligned_cols=172 Identities=13% Similarity=0.200 Sum_probs=144.1
Q ss_pred CeeEEEEeCCCcEEEEecCCceEEEEee-cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEE
Q 013184 249 GIHFMASNNDCGVRDFDMERFQLSKHFS-FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASA 327 (448)
Q Consensus 249 ~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~ 327 (448)
...|+.+++||.+.|.+- .++..+.+. |.+.+.|-.|+|+|.-|++++.||.|++|. ++|....++.....+|.|++
T Consensus 75 ~d~~~i~s~DGkf~il~k-~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~ 152 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILNK-SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCAR 152 (737)
T ss_pred cceEEEEcCCceEEEecc-cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEE
Confidence 447899999999999885 456666666 999999999999999999999999999997 67776666666778999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCc
Q 013184 328 WHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGE 407 (448)
Q Consensus 328 ~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~ 407 (448)
|.|+.+.++.+.. +.+.|=.+.. ...+...+.|.+-|-++.|+|....+++|+.|-..+|||. .|..+..-..|.-+
T Consensus 153 W~p~S~~vl~c~g-~h~~IKpL~~-n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ey~ 229 (737)
T KOG1524|consen 153 WAPNSNSIVFCQG-GHISIKPLAA-NSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTSAAEEYA 229 (737)
T ss_pred ECCCCCceEEecC-CeEEEeeccc-ccceeEEeccCcEEEEeecCccccceeecCCceeEEeecc-cCcccccCChhccc
Confidence 9998876666543 4577766654 5556678899999999999999999999999999999994 57777777789999
Q ss_pred eEEEEEccCCCeEEEEEec
Q 013184 408 ISGMTFSPDTEALFIGVWD 426 (448)
Q Consensus 408 v~~~~fspdg~~L~~~~~D 426 (448)
|++++|.|+ +.++.++..
T Consensus 230 ITSva~npd-~~~~v~S~n 247 (737)
T KOG1524|consen 230 ITSVAFNPE-KDYLLWSYN 247 (737)
T ss_pred eeeeeeccc-cceeeeeee
Confidence 999999999 666777654
No 189
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.67 E-value=4e-14 Score=128.10 Aligned_cols=193 Identities=17% Similarity=0.262 Sum_probs=145.6
Q ss_pred ceeeEEEEecCCEEEEEeCCCe--EEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCC
Q 013184 191 QTQVSTLAVRDNLLIAGGFQGE--LICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMER 268 (448)
Q Consensus 191 ~~~i~~l~~~~~~lvsg~~dg~--i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~ 268 (448)
+..|.-|-|...++|..+.+.. +++.++..... .|..... ..+.++.+ + ..+|+++-.+ .|+|||+.+
T Consensus 46 ~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~-ICe~~fp---t~IL~Vrm--N---r~RLvV~Lee-~IyIydI~~ 115 (391)
T KOG2110|consen 46 GVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTT-ICEIFFP---TSILAVRM--N---RKRLVVCLEE-SIYIYDIKD 115 (391)
T ss_pred CeEEEEeecccceeEEEecCCCceEEEEEcccCce-EEEEecC---CceEEEEE--c---cceEEEEEcc-cEEEEeccc
Confidence 3467778888888777766544 77777655442 2322211 12334444 2 3366766654 499999999
Q ss_pred ceEEEEee----cCCCeeEEEECCCCCEEEEEe--cCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCC
Q 013184 269 FQLSKHFS----FPWPVNHTSLSPDGKLLVIVG--DNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDK 342 (448)
Q Consensus 269 ~~~~~~~~----~~~~v~~~~~sp~~~~l~~~~--~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~ 342 (448)
.+++.++. ++..+.++++++.+.+++.-+ ..|.|.+||..+-+.+..+..|.+.+.+++|+|+|.+|||++..|
T Consensus 116 MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKG 195 (391)
T KOG2110|consen 116 MKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKG 195 (391)
T ss_pred ceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCc
Confidence 99998887 233455555555666887643 578999999999999999999999999999999999999999998
Q ss_pred c-EEEEEccCCCcceEEEccCC--CCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 013184 343 T-CRVWDVRNLSKSVAVLKGNL--GAIRSIRFTSDGNFMAMAEPADFVHVYDAKN 394 (448)
Q Consensus 343 ~-i~iwd~~~~~~~~~~~~~~~--~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~ 394 (448)
+ |||+.+.+ ++.+..+.-.. ..|.+++|+|++++|++.+..++|+||-+..
T Consensus 196 TVIRVf~v~~-G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 196 TVIRVFSVPE-GQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred eEEEEEEcCC-ccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 7 79999976 77777776433 4688999999999999999999999998754
No 190
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.67 E-value=2.1e-13 Score=131.03 Aligned_cols=237 Identities=13% Similarity=0.157 Sum_probs=150.3
Q ss_pred cceeeeCCCCeEEEec--CCeEEEEecCC-CceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEe-C
Q 013184 136 RNLVWSTSKHDVYLMS--HFSIVHWSSLS-SKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGG-F 209 (448)
Q Consensus 136 r~l~~~~~~~~v~~~~--~~~v~~w~~~~-~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~-~ 209 (448)
..+...+.++.+|.++ ++.|..|+... +....+-...-.. ....+++ ++++|++++ .
T Consensus 38 ~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~-----------------~p~~i~~~~~g~~l~v~~~~ 100 (330)
T PRK11028 38 QPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPG-----------------SPTHISTDHQGRFLFSASYN 100 (330)
T ss_pred ccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCC-----------------CceEEEECCCCCEEEEEEcC
Confidence 3455667777777763 46688898752 2222221111000 1233444 788777776 4
Q ss_pred CCeEEEEEcCCCCcee-EEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCc-eEEE------EeecCCCe
Q 013184 210 QGELICKYLDQPGVSF-CSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERF-QLSK------HFSFPWPV 281 (448)
Q Consensus 210 dg~i~vw~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~-~~~~------~~~~~~~v 281 (448)
+|.|.+|+++..+... ........ ..+..+. ++|+++.++++...++.|.+||+.+. .+.. ........
T Consensus 101 ~~~v~v~~~~~~g~~~~~~~~~~~~-~~~~~~~--~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p 177 (330)
T PRK11028 101 ANCVSVSPLDKDGIPVAPIQIIEGL-EGCHSAN--IDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGP 177 (330)
T ss_pred CCeEEEEEECCCCCCCCceeeccCC-CcccEeE--eCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCC
Confidence 8899999997544221 11111111 1223333 48999866677778899999999763 2221 12234456
Q ss_pred eEEEECCCCCEEEEEec-CCcEEEEECCC--Cc--eeEeeecC------CCcEEEEEEcCCCCEEEEEeC-CCcEEEEEc
Q 013184 282 NHTSLSPDGKLLVIVGD-NPEGILVDSQT--GK--AIMPLCGH------LDFSFASAWHPDGRIFATGNQ-DKTCRVWDV 349 (448)
Q Consensus 282 ~~~~~sp~~~~l~~~~~-d~~i~i~d~~~--~~--~~~~l~~h------~~~v~~~~~~p~g~~l~s~~~-d~~i~iwd~ 349 (448)
..++|+|+|++++++.. ++.|.+|++.. ++ .+..+..+ ......+.++|+|+++++++. ++.|.+|++
T Consensus 178 ~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i 257 (330)
T PRK11028 178 RHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSV 257 (330)
T ss_pred ceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEE
Confidence 78999999999988876 88999999873 33 23333321 123346889999999998865 689999999
Q ss_pred cCCCcc---eEEEccCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEECC
Q 013184 350 RNLSKS---VAVLKGNLGAIRSIRFTSDGNFMAMAEP-ADFVHVYDAK 393 (448)
Q Consensus 350 ~~~~~~---~~~~~~~~~~v~~l~~sp~g~~l~s~~~-d~~v~vwd~~ 393 (448)
...+.. +..... ....+.++|+|+|++|+++.. ++.|.+|++.
T Consensus 258 ~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 258 SEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred eCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 653322 222221 124567899999999998875 7899999874
No 191
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.67 E-value=3.2e-16 Score=150.03 Aligned_cols=177 Identities=16% Similarity=0.185 Sum_probs=143.3
Q ss_pred EeCCCcEEEEecCC-ce----EEEEeecCCCeeEEEECC-CCCEEEEEecCCcEEEEECCCC-------ceeEeeecCCC
Q 013184 255 SNNDCGVRDFDMER-FQ----LSKHFSFPWPVNHTSLSP-DGKLLVIVGDNPEGILVDSQTG-------KAIMPLCGHLD 321 (448)
Q Consensus 255 ~s~dg~v~iwd~~~-~~----~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~i~i~d~~~~-------~~~~~l~~h~~ 321 (448)
++.-|.|-||++.. |+ .+-.+.....|+.+.|.| |...|+++++||.|+||.+..+ .+...+.+|..
T Consensus 599 ~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~e 678 (1012)
T KOG1445|consen 599 AGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGE 678 (1012)
T ss_pred cCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccc
Confidence 45568999999864 33 223333566799999999 8889999999999999998654 34456888999
Q ss_pred cEEEEEEcC-CCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeee
Q 013184 322 FSFASAWHP-DGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQ 400 (448)
Q Consensus 322 ~v~~~~~~p-~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~ 400 (448)
.|+++.|+| -...|++++.|.+|++||+++ .+....+.+|.+.|..++|||+|+.+|+.+.||+|+||+-+++.....
T Consensus 679 KI~slRfHPLAadvLa~asyd~Ti~lWDl~~-~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~ 757 (1012)
T KOG1445|consen 679 KITSLRFHPLAADVLAVASYDSTIELWDLAN-AKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVY 757 (1012)
T ss_pred eEEEEEecchhhhHhhhhhccceeeeeehhh-hhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccc
Confidence 999999999 456899999999999999988 777788999999999999999999999999999999999888765433
Q ss_pred eec--CcCceEEEEEccCCCeEEEEEecCCcceE
Q 013184 401 EID--FFGEISGMTFSPDTEALFIGVWDRTYGSL 432 (448)
Q Consensus 401 ~~~--~~~~v~~~~fspdg~~L~~~~~D~~~~~l 432 (448)
... ....-..|.|.-+|+++++.+.|...-+-
T Consensus 758 Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQ 791 (1012)
T KOG1445|consen 758 EGKGPVGTRGARILWACDGRIVIVVGFDKSSERQ 791 (1012)
T ss_pred cCCCCccCcceeEEEEecCcEEEEecccccchhh
Confidence 221 12334568899999999999888765433
No 192
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.67 E-value=2.2e-15 Score=134.14 Aligned_cols=231 Identities=16% Similarity=0.178 Sum_probs=159.6
Q ss_pred CEEEEEeCCCeEEEEEcCCCCceeEEE--eecCCCC-ceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee-c
Q 013184 202 NLLIAGGFQGELICKYLDQPGVSFCSR--TTYDENA-ITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS-F 277 (448)
Q Consensus 202 ~~lvsg~~dg~i~vw~~~~~~~~~~~~--~~~~~~~-~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~ 277 (448)
..+++.|. ..+.++............ ....+.. .-.+...+....+..++++|+.-|.|+|.|+.++++...+. |
T Consensus 56 ~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~gh 134 (385)
T KOG1034|consen 56 QVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGH 134 (385)
T ss_pred ceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceecc
Confidence 44555443 355666665544211111 1122222 22333333344466789999999999999999999998887 9
Q ss_pred CCCeeEEEECC-CCCEEEEEecCCcEEEEECCCCceeEeee---cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCC
Q 013184 278 PWPVNHTSLSP-DGKLLVIVGDNPEGILVDSQTGKAIMPLC---GHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLS 353 (448)
Q Consensus 278 ~~~v~~~~~sp-~~~~l~~~~~d~~i~i~d~~~~~~~~~l~---~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~ 353 (448)
.+.|+.+.++| ..+++++++.|..|++|++++..++..+- +|.+.|.++.|+++|.+|++++.|.++++|++....
T Consensus 135 G~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~ 214 (385)
T KOG1034|consen 135 GGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKE 214 (385)
T ss_pred CccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhH
Confidence 99999999999 56789999999999999999999998864 699999999999999999999999999999996210
Q ss_pred -----c-------------------ce---EEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC-CCCcee-------
Q 013184 354 -----K-------------------SV---AVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDA-KNGFEK------- 398 (448)
Q Consensus 354 -----~-------------------~~---~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~-~~~~~~------- 398 (448)
+ .+ .+-.-|...|-|++|- |.++++-+-++.|..|-. +-++.+
T Consensus 215 f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~e 292 (385)
T KOG1034|consen 215 FKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPE 292 (385)
T ss_pred HhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCc
Confidence 0 00 0122366677777775 689999888999999986 222111
Q ss_pred --eeeec----CcCceEEEE--EccCCCeEEEEEecCCcceEEEEecc
Q 013184 399 --EQEID----FFGEISGMT--FSPDTEALFIGVWDRTYGSLLQYNRC 438 (448)
Q Consensus 399 --~~~~~----~~~~v~~~~--fspdg~~L~~~~~D~~~~~ll~~~~~ 438 (448)
.++.. ....|+-+. |.|-++.||.|..- |.++-|+-.
T Consensus 293 s~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~---g~v~vwdL~ 337 (385)
T KOG1034|consen 293 SATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQS---GKVYVWDLD 337 (385)
T ss_pred cceeeeeEeccCccceEEEEEeecHHHHHHhhccCC---CcEEEEECC
Confidence 11111 223455554 45668889888754 455555433
No 193
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.67 E-value=3.2e-14 Score=123.50 Aligned_cols=279 Identities=18% Similarity=0.138 Sum_probs=188.2
Q ss_pred CCCCcccccccceeeeCCCCeEEEe-cCCeEEEEecCCCc--eeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEecCC
Q 013184 126 VKSTILHFQLRNLVWSTSKHDVYLM-SHFSIVHWSSLSSK--RTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAVRDN 202 (448)
Q Consensus 126 ~~~~~~hfq~r~l~~~~~~~~v~~~-~~~~v~~w~~~~~~--~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~~~~ 202 (448)
......|||+.+++..+.....+-. -..+|.+|+..+.. ..++...- . | .-.++.-+..
T Consensus 24 f~v~snhwqlk~~is~~~~s~~~ni~~t~sv~i~~~y~N~~~iv~~y~g~---~------------F---~p~s~~~kc~ 85 (344)
T KOG4532|consen 24 FPVNSNHWQLKANISLPPPSQPINISKTISVPINSHYSNPKGIVEFYTGM---T------------F---TPGSFINKCV 85 (344)
T ss_pred CccchhhhhhhhcccCCCCCccccccceeeeEeccccCCchhhEEeeecc---c------------c---cchHhhcccc
Confidence 3455789999999877666544332 23458888865433 22222100 0 0 0112222678
Q ss_pred EEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEeecC-CCe
Q 013184 203 LLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFSFP-WPV 281 (448)
Q Consensus 203 ~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~-~~v 281 (448)
+|+.||..|++.+|...+...... ....+.+++.-.-.. .+....+..+++|.++++++++.+........+ -.+
T Consensus 86 ~la~gG~~g~fd~~~~~tn~~h~~-~cd~snn~v~~~~r~---cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ 161 (344)
T KOG4532|consen 86 TLADGGASGQFDLFACNTNDGHLY-QCDVSNNDVTLVKRY---CDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQ 161 (344)
T ss_pred EEEeccccceeeeecccCccccee-eecccccchhhhhhh---cccccceeeccCCcceeEEEEecCcccceeeccccce
Confidence 999999999999999987653211 111122222111111 112235777889999999988765433322211 348
Q ss_pred eEEEECCCCCEEEEEecCCcEEEEECCCCc-e-eE-eeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEE
Q 013184 282 NHTSLSPDGKLLVIVGDNPEGILVDSQTGK-A-IM-PLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAV 358 (448)
Q Consensus 282 ~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~-~-~~-~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~ 358 (448)
++++++|+++++++.++...|..|.+.... . +. ......+.-++..|+.....+|++.+||++.|||+|+...+...
T Consensus 162 ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~ 241 (344)
T KOG4532|consen 162 NSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAE 241 (344)
T ss_pred eeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhh
Confidence 999999999999999999999999875432 2 22 23345677789999999999999999999999999987666544
Q ss_pred E----ccCCCCeEEEEEcCCC--CEEEEEeCCCeEEEEECCCCceeeeeec-------CcC-ceEEEEEccCCCeEEEEE
Q 013184 359 L----KGNLGAIRSIRFTSDG--NFMAMAEPADFVHVYDAKNGFEKEQEID-------FFG-EISGMTFSPDTEALFIGV 424 (448)
Q Consensus 359 ~----~~~~~~v~~l~~sp~g--~~l~s~~~d~~v~vwd~~~~~~~~~~~~-------~~~-~v~~~~fspdg~~L~~~~ 424 (448)
. ..|.++++.+.|+|-| .+|.....-+.++|.|++++.....+.. |.. .|.+-.|+.++..+.+.+
T Consensus 242 ~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~ 321 (344)
T KOG4532|consen 242 ISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKN 321 (344)
T ss_pred hcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCccccccc
Confidence 3 3488999999999977 4777777888999999999875543322 222 388889999888888877
Q ss_pred ec
Q 013184 425 WD 426 (448)
Q Consensus 425 ~D 426 (448)
.+
T Consensus 322 e~ 323 (344)
T KOG4532|consen 322 EL 323 (344)
T ss_pred ch
Confidence 65
No 194
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.66 E-value=1.3e-14 Score=143.94 Aligned_cols=242 Identities=14% Similarity=0.167 Sum_probs=168.5
Q ss_pred eeeCCCCeEEEe--cCCeEEEEecCCCceeE--EEecCCCCCCCCCCCCCcccCCcceeeEEEEe----cCCEEEEEeCC
Q 013184 139 VWSTSKHDVYLM--SHFSIVHWSSLSSKRTE--VLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV----RDNLLIAGGFQ 210 (448)
Q Consensus 139 ~~~~~~~~v~~~--~~~~v~~w~~~~~~~~~--~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~----~~~~lvsg~~d 210 (448)
-.++..-.++++ .+|+|.+||+..+.... .+.... .-+..+|+.+.+ .+.-+++++.|
T Consensus 249 ~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~--------------~sh~~~v~~vvW~~~~~~~~f~s~ssD 314 (555)
T KOG1587|consen 249 KFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALE--------------VSHSEPVTAVVWLQNEHNTEFFSLSSD 314 (555)
T ss_pred EeccCCcceEEeeccCceEEEEEccCCCCCCCccccccc--------------ccCCcCeEEEEEeccCCCCceEEEecC
Confidence 344544444444 47889999986544421 111111 111124566655 23569999999
Q ss_pred CeEEEEEcCCCCceeEEEe---ec----CCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCce--------EEEEe
Q 013184 211 GELICKYLDQPGVSFCSRT---TY----DENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQ--------LSKHF 275 (448)
Q Consensus 211 g~i~vw~~~~~~~~~~~~~---~~----~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~--------~~~~~ 275 (448)
|.|..|+++.-........ .. .....+.+..+.+.+.....+++|+..|.|.--+....+ .+..+
T Consensus 315 G~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~ 394 (555)
T KOG1587|consen 315 GSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTF 394 (555)
T ss_pred CcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccc
Confidence 9999998765432111111 11 113334455556688888899999999999874443322 22233
Q ss_pred e-cCCCeeEEEECCCCCEEEEEecCCcEEEEECC-CCceeEeeecCCCcEEEEEEcCC-CCEEEEEeCCCcEEEEEccCC
Q 013184 276 S-FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQ-TGKAIMPLCGHLDFSFASAWHPD-GRIFATGNQDKTCRVWDVRNL 352 (448)
Q Consensus 276 ~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~-~~~~~~~l~~h~~~v~~~~~~p~-g~~l~s~~~d~~i~iwd~~~~ 352 (448)
. |.++|.++.++|=+..++..+.|..++||... ...++..+..+.+.+++++|||. ...|+++..+|.+.|||+...
T Consensus 395 ~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~ 474 (555)
T KOG1587|consen 395 ITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQD 474 (555)
T ss_pred cccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhcc
Confidence 3 89999999999966655555559999999887 66777778888999999999995 458899999999999999752
Q ss_pred -CcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 013184 353 -SKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKN 394 (448)
Q Consensus 353 -~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~ 394 (448)
..++.....+....+.+.|++.|+.|++|...|.+++|++..
T Consensus 475 ~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 475 DEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred ccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 245666655667788899999999999999999999999864
No 195
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=1.5e-14 Score=129.46 Aligned_cols=259 Identities=13% Similarity=0.119 Sum_probs=169.2
Q ss_pred EEE-ecCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe----cCCEEEEEeCCCeEEEEEcCCC
Q 013184 147 VYL-MSHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV----RDNLLIAGGFQGELICKYLDQP 221 (448)
Q Consensus 147 v~~-~~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~----~~~~lvsg~~dg~i~vw~~~~~ 221 (448)
|.+ .++++|+++|..++..-+ .+.++.. .+..+.| .++.+.+|+.||+|++||++..
T Consensus 43 vav~lSngsv~lyd~~tg~~l~--~fk~~~~----------------~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~ 104 (376)
T KOG1188|consen 43 VAVSLSNGSVRLYDKGTGQLLE--EFKGPPA----------------TTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQ 104 (376)
T ss_pred EEEEecCCeEEEEeccchhhhh--eecCCCC----------------cccceEEecCCCCCeeEEeccCCeEEEEEeecc
Confidence 444 478899999987744333 3333322 1223333 5688999999999999999887
Q ss_pred CceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEe----CCCcEEEEecCCceE-EEEee--cCCCeeEEEECC-CCCEE
Q 013184 222 GVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASN----NDCGVRDFDMERFQL-SKHFS--FPWPVNHTSLSP-DGKLL 293 (448)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s----~dg~v~iwd~~~~~~-~~~~~--~~~~v~~~~~sp-~~~~l 293 (448)
..........+...+-.+++. ...+. ++++|. .+..|.+||++..+. +..+. |...|+++.|+| +.++|
T Consensus 105 ~e~a~~~~~~~~~~~f~~ld~--nck~~-ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlL 181 (376)
T KOG1188|consen 105 AESARISWTQQSGTPFICLDL--NCKKN-IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLL 181 (376)
T ss_pred hhhhheeccCCCCCcceEeec--cCcCC-eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeE
Confidence 755334444444334444433 32332 555554 367899999987665 55554 899999999999 78899
Q ss_pred EEEecCCcEEEEECCCCce---eEeeecCCCcEEEEEEcCCC-CEEEEEeCCCcEEEEEccCCCcceEEEccCC------
Q 013184 294 VIVGDNPEGILVDSQTGKA---IMPLCGHLDFSFASAWHPDG-RIFATGNQDKTCRVWDVRNLSKSVAVLKGNL------ 363 (448)
Q Consensus 294 ~~~~~d~~i~i~d~~~~~~---~~~l~~h~~~v~~~~~~p~g-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~------ 363 (448)
++|+.||.|.++|+..... +...-.|...|.++.|+.++ +.|.+-+...+..+|++.. +.+...+....
T Consensus 182 lSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~-~~~~~~~~~~~~~~~d~ 260 (376)
T KOG1188|consen 182 LSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELED-GSEETWLENPDVSADDL 260 (376)
T ss_pred EeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccC-CChhhcccCccchhhhH
Confidence 9999999999999875432 22223477889999999877 4588888999999999976 43433332210
Q ss_pred ------CCeEEEEEcC-CCCEEEEEeC-CCeEEEEECC---CC---ceeeeeec-CcCceEEEEEccCCCeEEEEEecCC
Q 013184 364 ------GAIRSIRFTS-DGNFMAMAEP-ADFVHVYDAK---NG---FEKEQEID-FFGEISGMTFSPDTEALFIGVWDRT 428 (448)
Q Consensus 364 ------~~v~~l~~sp-~g~~l~s~~~-d~~v~vwd~~---~~---~~~~~~~~-~~~~v~~~~fspdg~~L~~~~~D~~ 428 (448)
..+-.. .+| ++.+++.++. .+...++-+. ++ +.+..+.+ |..-|.++.|...+..|++|+.||.
T Consensus 261 r~~~~~dY~I~~-~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~ 339 (376)
T KOG1188|consen 261 RKEDNCDYVINE-HSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGL 339 (376)
T ss_pred Hhhhhhhheeec-ccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCce
Confidence 111111 223 4455555554 4555555433 22 22333444 5556889999988999999999954
No 196
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=1e-13 Score=137.37 Aligned_cols=197 Identities=15% Similarity=0.126 Sum_probs=132.6
Q ss_pred CceeeEEEEeCCCCCeeEEEEeCC--CcEEEEecCCceEEEEeecCCCeeEEEECCCCCEEEE-EecCCcEEEE--ECCC
Q 013184 235 AITNAVEIYNSPSGGIHFMASNND--CGVRDFDMERFQLSKHFSFPWPVNHTSLSPDGKLLVI-VGDNPEGILV--DSQT 309 (448)
Q Consensus 235 ~~~~~v~~~~~~~~~~~l~s~s~d--g~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~~d~~i~i~--d~~~ 309 (448)
..+.... ++|+|..++++...+ ..|.+||+.+++........+.+.+.+|+|+|+.|+. .+.++...|| |..+
T Consensus 196 ~~v~~p~--wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~ 273 (427)
T PRK02889 196 EPIISPA--WSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADG 273 (427)
T ss_pred CCcccce--EcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCC
Confidence 3344444 499997544444333 3599999998877655546667788999999998875 5666665555 5555
Q ss_pred CceeEeeecCCCcEEEEEEcCCCCEEEEEeC-CCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCC---
Q 013184 310 GKAIMPLCGHLDFSFASAWHPDGRIFATGNQ-DKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPAD--- 385 (448)
Q Consensus 310 ~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~--- 385 (448)
+. ...+..+........|+|||+.|+..+. ++...||.+...+.....+...........|||+|++|+..+..+
T Consensus 274 ~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~ 352 (427)
T PRK02889 274 SG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAF 352 (427)
T ss_pred CC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcE
Confidence 54 4556555555667899999998876554 567777776532333333333333345689999999999877654
Q ss_pred eEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEecCCcceEEEEe
Q 013184 386 FVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDRTYGSLLQYN 436 (448)
Q Consensus 386 ~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~~~~ll~~~ 436 (448)
.|.+||+.++... .+.. ......++|+|||+.|+.++.++....+....
T Consensus 353 ~I~v~d~~~g~~~-~lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~ 401 (427)
T PRK02889 353 KLYVQDLATGQVT-ALTD-TTRDESPSFAPNGRYILYATQQGGRSVLAAVS 401 (427)
T ss_pred EEEEEECCCCCeE-EccC-CCCccCceECCCCCEEEEEEecCCCEEEEEEE
Confidence 6999999887654 3332 23346789999999999988777654444433
No 197
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=2.6e-13 Score=116.28 Aligned_cols=220 Identities=15% Similarity=0.167 Sum_probs=150.8
Q ss_pred eeEEEEecCCEEEEEeCCCeEEEEEcCCCCce-eE-----EEeec----CCCCceeeEEEEeCCCCCeeEEEEeCCCcEE
Q 013184 193 QVSTLAVRDNLLIAGGFQGELICKYLDQPGVS-FC-----SRTTY----DENAITNAVEIYNSPSGGIHFMASNNDCGVR 262 (448)
Q Consensus 193 ~i~~l~~~~~~lvsg~~dg~i~vw~~~~~~~~-~~-----~~~~~----~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~ 262 (448)
+|..|++-..+|++|+. |.|+-|.+...... -+ ..... ..-..++++.+ .|..+. ++.++.|+.++
T Consensus 64 piy~~~f~d~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~l--dP~enS-i~~AgGD~~~y 139 (325)
T KOG0649|consen 64 PIYYLAFHDDFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWL--DPSENS-ILFAGGDGVIY 139 (325)
T ss_pred CeeeeeeehhheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEe--ccCCCc-EEEecCCeEEE
Confidence 58999998888888875 99999988654321 11 11111 11223566655 666653 44555799999
Q ss_pred EEecCCceEEEEee-cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeec---------CC-CcEEEEEEcCC
Q 013184 263 DFDMERFQLSKHFS-FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCG---------HL-DFSFASAWHPD 331 (448)
Q Consensus 263 iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~---------h~-~~v~~~~~~p~ 331 (448)
.||+++|++.+.++ |...|.++.-......+++|+.||++++||.++++.+..+.. |. ..|-+++- +
T Consensus 140 ~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~ 217 (325)
T KOG0649|consen 140 QVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--N 217 (325)
T ss_pred EEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--c
Confidence 99999999999999 999999999866667899999999999999999999887753 11 23445544 4
Q ss_pred CCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEE
Q 013184 332 GRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGM 411 (448)
Q Consensus 332 g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~ 411 (448)
..++++|+ ...+.+|.++. ..+..++. -.+++..+.|-. ..+++++..+.|.-|.+. |..............+.
T Consensus 218 edWlvCGg-Gp~lslwhLrs-se~t~vfp-ipa~v~~v~F~~--d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~ 291 (325)
T KOG0649|consen 218 EDWLVCGG-GPKLSLWHLRS-SESTCVFP-IPARVHLVDFVD--DCVLIGGEGNHVQSYTLN-GVLQANIPVESTACYSA 291 (325)
T ss_pred CceEEecC-CCceeEEeccC-CCceEEEe-cccceeEeeeec--ceEEEeccccceeeeeec-cEEEEeccCCccceeee
Confidence 45666554 45699999997 66666655 345677788854 466777777789889864 44444444333345556
Q ss_pred EEccCC-CeEEEEE
Q 013184 412 TFSPDT-EALFIGV 424 (448)
Q Consensus 412 ~fspdg-~~L~~~~ 424 (448)
+|+... ++|-+++
T Consensus 292 s~~~~p~k~~s~ag 305 (325)
T KOG0649|consen 292 SWQTSPIKFISIAG 305 (325)
T ss_pred cccCCceEEEEecc
Confidence 665443 3343333
No 198
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=2.3e-13 Score=134.86 Aligned_cols=232 Identities=14% Similarity=0.078 Sum_probs=155.2
Q ss_pred eEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeC---CCeEEEEEcCCCCceeEEE
Q 013184 154 SIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGF---QGELICKYLDQPGVSFCSR 228 (448)
Q Consensus 154 ~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~---dg~i~vw~~~~~~~~~~~~ 228 (448)
.|.+||....+...+....+ .+.+.++ +|+.|+..+. ...|.+|++..+....
T Consensus 180 ~l~~~d~dg~~~~~lt~~~~-------------------~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~--- 237 (429)
T PRK03629 180 ELRVSDYDGYNQFVVHRSPQ-------------------PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--- 237 (429)
T ss_pred eEEEEcCCCCCCEEeecCCC-------------------ceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE---
Confidence 57888866554444433211 2444444 8888876543 3578899987654321
Q ss_pred eecCCCCceeeEEEEeCCCCCeeEEEEeCCC--cEEEEecCCceEEEEeecCCCeeEEEECCCCCEEEEEecC-C--cEE
Q 013184 229 TTYDENAITNAVEIYNSPSGGIHFMASNNDC--GVRDFDMERFQLSKHFSFPWPVNHTSLSPDGKLLVIVGDN-P--EGI 303 (448)
Q Consensus 229 ~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg--~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-~--~i~ 303 (448)
+. ...+..... .++|+|..++++.+.+| .|++||+.+++..+.......+....|+|+|+.|+.++.. + .|.
T Consensus 238 l~-~~~~~~~~~--~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy 314 (429)
T PRK03629 238 VA-SFPRHNGAP--AFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVY 314 (429)
T ss_pred cc-CCCCCcCCe--EECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEE
Confidence 11 112222334 44999986666656555 4888999988877666666678899999999999887754 3 455
Q ss_pred EEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCC---CcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEE
Q 013184 304 LVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQD---KTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAM 380 (448)
Q Consensus 304 i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s 380 (448)
++|+.+++. ..+..+........|+|+|++|+..+.+ ..|.+||+.+ +. ...+... .......|+|||++|+.
T Consensus 315 ~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~-g~-~~~Lt~~-~~~~~p~~SpDG~~i~~ 390 (429)
T PRK03629 315 KVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT-GG-VQVLTDT-FLDETPSIAPNGTMVIY 390 (429)
T ss_pred EEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCC-CC-eEEeCCC-CCCCCceECCCCCEEEE
Confidence 567776654 3444444455678999999998877654 3588889865 33 3444432 23456789999999999
Q ss_pred EeCCC---eEEEEECCCCceeeeeecCcCceEEEEEcc
Q 013184 381 AEPAD---FVHVYDAKNGFEKEQEIDFFGEISGMTFSP 415 (448)
Q Consensus 381 ~~~d~---~v~vwd~~~~~~~~~~~~~~~~v~~~~fsp 415 (448)
++.++ .+.++++ +|.....+..|.+.+...+|+|
T Consensus 391 ~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 391 SSSQGMGSVLNLVST-DGRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred EEcCCCceEEEEEEC-CCCCeEECccCCCCcCCcccCC
Confidence 98776 3778887 4566666777888899999998
No 199
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=2.7e-13 Score=134.40 Aligned_cols=217 Identities=15% Similarity=0.090 Sum_probs=144.8
Q ss_pred CeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEe--CCCcEEEEecCCceEEEEeecCCCeeEEEECC
Q 013184 211 GELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASN--NDCGVRDFDMERFQLSKHFSFPWPVNHTSLSP 288 (448)
Q Consensus 211 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s--~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp 288 (448)
..|.+++.+..... .+.. ........ .++|+|..++++.. .+..|.+|++.+++........+.+..++|+|
T Consensus 179 ~~l~~~d~dg~~~~---~lt~-~~~~~~~p--~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SP 252 (429)
T PRK03629 179 YELRVSDYDGYNQF---VVHR-SPQPLMSP--AWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSP 252 (429)
T ss_pred eeEEEEcCCCCCCE---Eeec-CCCceeee--EEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECC
Confidence 36777777655432 2222 23334444 44999985554432 24579999999887665555556667899999
Q ss_pred CCCEEEEEe-cCC--cEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeC-CCcEEEEEccCCCcceEEEccCCC
Q 013184 289 DGKLLVIVG-DNP--EGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQ-DKTCRVWDVRNLSKSVAVLKGNLG 364 (448)
Q Consensus 289 ~~~~l~~~~-~d~--~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~ 364 (448)
+|+.|+... .++ .|.+||+.+++... +..+...+....|+|+|+.|+..+. ++..+||.+...+.....+.....
T Consensus 253 DG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~ 331 (429)
T PRK03629 253 DGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGS 331 (429)
T ss_pred CCCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCC
Confidence 999888653 344 58899998887654 4444456778999999998877665 455566644322334445554445
Q ss_pred CeEEEEEcCCCCEEEEEeCC---CeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEecCCcceEEEEe
Q 013184 365 AIRSIRFTSDGNFMAMAEPA---DFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDRTYGSLLQYN 436 (448)
Q Consensus 365 ~v~~l~~sp~g~~l~s~~~d---~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~~~~ll~~~ 436 (448)
......|+|+|++|+..+.+ ..|.+||+.++... .+.. .......+|+|||+.|+.++.++....+..+.
T Consensus 332 ~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~ 404 (429)
T PRK03629 332 QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVS 404 (429)
T ss_pred CccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEE
Confidence 56678999999999887654 36889999887643 3332 22345788999999999999887754444433
No 200
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.64 E-value=4.7e-14 Score=123.80 Aligned_cols=155 Identities=18% Similarity=0.336 Sum_probs=111.5
Q ss_pred eEEEEeCCCCCeeEEEEeC---------CCcEEEEecCC-ceEEEEee--cCCCeeEEEECCCCCEEEEEe--cCCcEEE
Q 013184 239 AVEIYNSPSGGIHFMASNN---------DCGVRDFDMER-FQLSKHFS--FPWPVNHTSLSPDGKLLVIVG--DNPEGIL 304 (448)
Q Consensus 239 ~v~~~~~~~~~~~l~s~s~---------dg~v~iwd~~~-~~~~~~~~--~~~~v~~~~~sp~~~~l~~~~--~d~~i~i 304 (448)
.+.+.++++|..+++.... -+...+|-++. ......+. ..++|..++|+|+|+.|++.. .++.|.+
T Consensus 8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 4556668888766665541 13345555422 23333443 456799999999999987654 5678999
Q ss_pred EECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeC---CCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEE
Q 013184 305 VDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQ---DKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMA 381 (448)
Q Consensus 305 ~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~ 381 (448)
||++ ++.+..+. ...+..+.|+|+|++|++++. .|.|.+||+++ .+.+.... | ..+..++|+|+|++|+++
T Consensus 88 yd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~-~~~i~~~~-~-~~~t~~~WsPdGr~~~ta 161 (194)
T PF08662_consen 88 YDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK-KKKISTFE-H-SDATDVEWSPDGRYLATA 161 (194)
T ss_pred EcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCC-CEEeeccc-c-CcEEEEEEcCCCCEEEEE
Confidence 9996 66666664 567789999999999999874 46799999985 56665554 3 347899999999999998
Q ss_pred eC------CCeEEEEECCCCceeee
Q 013184 382 EP------ADFVHVYDAKNGFEKEQ 400 (448)
Q Consensus 382 ~~------d~~v~vwd~~~~~~~~~ 400 (448)
.. |+.++||+.. |+.+..
T Consensus 162 ~t~~r~~~dng~~Iw~~~-G~~l~~ 185 (194)
T PF08662_consen 162 TTSPRLRVDNGFKIWSFQ-GRLLYK 185 (194)
T ss_pred EeccceeccccEEEEEec-CeEeEe
Confidence 74 6779999974 665543
No 201
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.63 E-value=2.5e-14 Score=130.22 Aligned_cols=222 Identities=15% Similarity=0.115 Sum_probs=168.9
Q ss_pred cceeeEEEEecCCEEEEEeCCCeEEEEEcCCCCc--eeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCC--CcEEEEe
Q 013184 190 TQTQVSTLAVRDNLLIAGGFQGELICKYLDQPGV--SFCSRTTYDENAITNAVEIYNSPSGGIHFMASNND--CGVRDFD 265 (448)
Q Consensus 190 ~~~~i~~l~~~~~~lvsg~~dg~i~vw~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d--g~v~iwd 265 (448)
...+|..++..+..|++|-.+|.+.+|....+.. .....+..+ .....+ -..+....++++|+.. ..+.|||
T Consensus 104 ~~~~I~gl~~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g--~g~~~~--r~~~~~p~Iva~GGke~~n~lkiwd 179 (412)
T KOG3881|consen 104 GTKSIKGLKLADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG--PGLYDV--RQTDTDPYIVATGGKENINELKIWD 179 (412)
T ss_pred ccccccchhhcCCEEEEEecCCcEEEEeccCCccccccceeeecC--Cceeee--ccCCCCCceEecCchhcccceeeee
Confidence 3346777777778899999999999999885441 111222212 112222 2355556577779888 8899999
Q ss_pred cCCceEEEEee----------cCCCeeEEEECCC--CCEEEEEecCCcEEEEECCCCc-eeEeeecCCCcEEEEEEcCCC
Q 013184 266 MERFQLSKHFS----------FPWPVNHTSLSPD--GKLLVIVGDNPEGILVDSQTGK-AIMPLCGHLDFSFASAWHPDG 332 (448)
Q Consensus 266 ~~~~~~~~~~~----------~~~~v~~~~~sp~--~~~l~~~~~d~~i~i~d~~~~~-~~~~l~~h~~~v~~~~~~p~g 332 (448)
++..+.+..-+ .+-.++.+.|-|. ...||+++.-+.+++||.+.++ ++..+.--..+++++...|.|
T Consensus 180 le~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~g 259 (412)
T KOG3881|consen 180 LEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSG 259 (412)
T ss_pred cccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCC
Confidence 99876554432 2334678888886 7899999999999999998764 577777778899999999999
Q ss_pred CEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEE
Q 013184 333 RIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMT 412 (448)
Q Consensus 333 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~ 412 (448)
+.|++|..-+.+..+|+|........+.+-.+.|+++..+|.+++||+++-|..|+|+|+++.+.+.... ....++.|.
T Consensus 260 n~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvY-vKs~lt~il 338 (412)
T KOG3881|consen 260 NFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY-VKSRLTFIL 338 (412)
T ss_pred cEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhh-hhccccEEE
Confidence 9999999999999999997434445588899999999999999999999999999999999966554432 345677777
Q ss_pred EccC
Q 013184 413 FSPD 416 (448)
Q Consensus 413 fspd 416 (448)
+.++
T Consensus 339 ~~~~ 342 (412)
T KOG3881|consen 339 LRDD 342 (412)
T ss_pred ecCC
Confidence 7654
No 202
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=3.4e-14 Score=129.19 Aligned_cols=232 Identities=16% Similarity=0.114 Sum_probs=164.9
Q ss_pred eeEEEEe--cCCEEEEEeCCCeEEEEEcCCCC---ceeEEEe-ecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEec
Q 013184 193 QVSTLAV--RDNLLIAGGFQGELICKYLDQPG---VSFCSRT-TYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDM 266 (448)
Q Consensus 193 ~i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~---~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~ 266 (448)
.|.+|.| ++++||+|+.|-.+++|+++..- ......+ ..+|..-+-++.+ ..++..+++|.++++|...|+
T Consensus 58 CiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F---~~~N~~~~SG~~~~~VI~HDi 134 (609)
T KOG4227|consen 58 CINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEF---DLENRFLYSGERWGTVIKHDI 134 (609)
T ss_pred ccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEE---ccCCeeEecCCCcceeEeeec
Confidence 4778888 88999999999999999986422 1111222 2334344455555 445668999999999999999
Q ss_pred CCceEEEEeecC---CCeeEEEECCCCCEEEEEecCCcEEEEECCCCc-eeEe--eecCCCcEEEEEEcC-CCCEEEEEe
Q 013184 267 ERFQLSKHFSFP---WPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGK-AIMP--LCGHLDFSFASAWHP-DGRIFATGN 339 (448)
Q Consensus 267 ~~~~~~~~~~~~---~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~-~~~~--l~~h~~~v~~~~~~p-~g~~l~s~~ 339 (448)
++.+.+..+.+. +.|..+..+|..+.|++.+.++.|.+||.+..+ .+.. +.........+.|+| ...+|++.+
T Consensus 135 Et~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~ 214 (609)
T KOG4227|consen 135 ETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNS 214 (609)
T ss_pred ccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEecc
Confidence 999988888854 489999999999999999999999999998755 2222 222345567889999 557889999
Q ss_pred CCCcEEEEEccCCCcceE-----------------------------------------------EEcc-CC-------C
Q 013184 340 QDKTCRVWDVRNLSKSVA-----------------------------------------------VLKG-NL-------G 364 (448)
Q Consensus 340 ~d~~i~iwd~~~~~~~~~-----------------------------------------------~~~~-~~-------~ 364 (448)
..+-+.+||+|....++. +++. |. .
T Consensus 215 ~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~ 294 (609)
T KOG4227|consen 215 ETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIK 294 (609)
T ss_pred ccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeee
Confidence 988999999875321110 0110 10 1
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEECCCC-----------------------ceeeeeecCcCceEEEEEccCCCeEE
Q 013184 365 AIRSIRFTSDGNFMAMAEPADFVHVYDAKNG-----------------------FEKEQEIDFFGEISGMTFSPDTEALF 421 (448)
Q Consensus 365 ~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~-----------------------~~~~~~~~~~~~v~~~~fspdg~~L~ 421 (448)
.+.+++|..+ ..+++|+.+-.|++|-+... +....+.+|.+-+..+.|+|....|+
T Consensus 295 T~KS~~F~~D-~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~ 373 (609)
T KOG4227|consen 295 TIKSMTFIDD-YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLV 373 (609)
T ss_pred eeeeeeeecc-eeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEe
Confidence 2344555433 34788888888999987531 12344668889999999999988887
Q ss_pred EEEecCC
Q 013184 422 IGVWDRT 428 (448)
Q Consensus 422 ~~~~D~~ 428 (448)
+++....
T Consensus 374 SSGVE~~ 380 (609)
T KOG4227|consen 374 SSGVENS 380 (609)
T ss_pred ccchhhh
Confidence 7765543
No 203
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=3.6e-13 Score=134.12 Aligned_cols=215 Identities=16% Similarity=0.127 Sum_probs=144.4
Q ss_pred CeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEe--CCCcEEEEecCCceEEEEeecCCCeeEEEECC
Q 013184 211 GELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASN--NDCGVRDFDMERFQLSKHFSFPWPVNHTSLSP 288 (448)
Q Consensus 211 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s--~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp 288 (448)
..|.+++.+..... .++ .+...+.... ++|+|..++++.. .+..|++||+.+++......+.+.+...+|+|
T Consensus 182 ~~l~~~d~dg~~~~---~lt-~~~~~v~~p~--wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SP 255 (435)
T PRK05137 182 KRLAIMDQDGANVR---YLT-DGSSLVLTPR--FSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSP 255 (435)
T ss_pred eEEEEECCCCCCcE---EEe-cCCCCeEeeE--ECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECC
Confidence 36777776544432 222 2333444444 4999985444433 24689999999888765555777788999999
Q ss_pred CCCEEEEE-ecCC--cEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeC-CC--cEEEEEccCCCcceEEEccC
Q 013184 289 DGKLLVIV-GDNP--EGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQ-DK--TCRVWDVRNLSKSVAVLKGN 362 (448)
Q Consensus 289 ~~~~l~~~-~~d~--~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~-d~--~i~iwd~~~~~~~~~~~~~~ 362 (448)
+|+.|+.. +.++ .|.+||+.+++. ..+..+.......+|+|||+.|+..+. ++ .|.+||+. +.....+..+
T Consensus 256 DG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~--g~~~~~lt~~ 332 (435)
T PRK05137 256 DGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNAD--GSNPRRISFG 332 (435)
T ss_pred CCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECC--CCCeEEeecC
Confidence 99987654 4444 477889888765 446556666677899999998887764 33 57777775 3444555545
Q ss_pred CCCeEEEEEcCCCCEEEEEeCC---CeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEecCCc---ceEEEEe
Q 013184 363 LGAIRSIRFTSDGNFMAMAEPA---DFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDRTY---GSLLQYN 436 (448)
Q Consensus 363 ~~~v~~l~~sp~g~~l~s~~~d---~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~~---~~ll~~~ 436 (448)
.+.+....|+|+|++|+....+ ..|.+||+..+.. ..+. ....+..++|+|||+.|+....+... ..+..+.
T Consensus 333 ~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~d 410 (435)
T PRK05137 333 GGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVD 410 (435)
T ss_pred CCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEE
Confidence 5567778999999999887643 3688899765543 2332 23357789999999999887665433 3455444
No 204
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.62 E-value=1.6e-15 Score=140.61 Aligned_cols=217 Identities=17% Similarity=0.173 Sum_probs=175.7
Q ss_pred EEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEE
Q 013184 195 STLAV--RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLS 272 (448)
Q Consensus 195 ~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~ 272 (448)
..+.+ +|..|+.|+.-|.|..+|+.+....+.... ...+..+.|+. +. .+++......++|||-. |..+
T Consensus 133 Y~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v----~Etv~Dv~~LH--ne--q~~AVAQK~y~yvYD~~-GtEl 203 (545)
T KOG1272|consen 133 YHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV----METVRDVTFLH--NE--QFFAVAQKKYVYVYDNN-GTEL 203 (545)
T ss_pred eeeeecCCccEEEecCCccceeeeecccceeeeeeeh----hhhhhhhhhhc--ch--HHHHhhhhceEEEecCC-CcEE
Confidence 34445 899999999999999999998876544333 23344555532 22 24444456789999965 5566
Q ss_pred EEeecCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 013184 273 KHFSFPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNL 352 (448)
Q Consensus 273 ~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~ 352 (448)
..+.....|..+.|-|.--+|++++..|.+..-|+.+|+.+..+....+.+..++-+|-...+-+|...|+|.+|....
T Consensus 204 HClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~s- 282 (545)
T KOG1272|consen 204 HCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNS- 282 (545)
T ss_pred eehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCC-
Confidence 6677667899999999988999999999999999999999999988888888999999888999999999999999976
Q ss_pred CcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEE
Q 013184 353 SKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIG 423 (448)
Q Consensus 353 ~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~ 423 (448)
..++..+-.|.++|+++++.++|+|+|+++.|..|+|||++..+.+..... .-+...++||..| .||.+
T Consensus 283 kePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg-lLA~~ 351 (545)
T KOG1272|consen 283 KEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG-LLALS 351 (545)
T ss_pred cchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc-ceeee
Confidence 788888888999999999999999999999999999999999876655554 3456788898765 44444
No 205
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.61 E-value=4.2e-14 Score=133.50 Aligned_cols=171 Identities=19% Similarity=0.257 Sum_probs=130.7
Q ss_pred cCCEEEEEeCCCeEEEEEcCCCCceeEE-EeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCC----------
Q 013184 200 RDNLLIAGGFQGELICKYLDQPGVSFCS-RTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMER---------- 268 (448)
Q Consensus 200 ~~~~lvsg~~dg~i~vw~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~---------- 268 (448)
++--|+.|=.-|.+.+.+.......... .-..-....+.++.| -|.+..+++++-.+|.++++|.+-
T Consensus 184 ~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikW--vpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~ 261 (636)
T KOG2394|consen 184 KGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKW--VPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQ 261 (636)
T ss_pred CCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEE--EeCCCceEEEEEecCceEEeeccccccCCCCccc
Confidence 5666788888899888876653321100 001111233445555 666666888999999999997642
Q ss_pred -------ceEE-----------EEee-cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEc
Q 013184 269 -------FQLS-----------KHFS-FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWH 329 (448)
Q Consensus 269 -------~~~~-----------~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~ 329 (448)
..+. .... ..+.|+..+|+|||++||+++.||.++|+|..+.+++..++.--+...|++|+
T Consensus 262 ~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWS 341 (636)
T KOG2394|consen 262 ALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWS 341 (636)
T ss_pred ccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEc
Confidence 0011 1111 24578999999999999999999999999999988887777777889999999
Q ss_pred CCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEEEEcC
Q 013184 330 PDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTS 373 (448)
Q Consensus 330 p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp 373 (448)
|||+||++|+.|.-|.||.+.. .+.+..-++|.++|..++|.|
T Consensus 342 PDGKyIvtGGEDDLVtVwSf~e-rRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 342 PDGKYIVTGGEDDLVTVWSFEE-RRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred CCccEEEecCCcceEEEEEecc-ceEEEeccccccceeeEeecc
Confidence 9999999999999999999976 888999999999999999983
No 206
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=3.2e-13 Score=134.27 Aligned_cols=215 Identities=17% Similarity=0.114 Sum_probs=142.7
Q ss_pred CeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeC---CCcEEEEecCCceEEEEeecCCCeeEEEEC
Q 013184 211 GELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNN---DCGVRDFDMERFQLSKHFSFPWPVNHTSLS 287 (448)
Q Consensus 211 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~---dg~v~iwd~~~~~~~~~~~~~~~v~~~~~s 287 (448)
.+|.+||.+..... .+..+ ...+... .++|+|.. |+.++. ...|++|++.+++......+.+...+++|+
T Consensus 184 ~~l~i~D~~g~~~~---~lt~~-~~~v~~p--~wSpDg~~-la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~S 256 (433)
T PRK04922 184 YALQVADSDGYNPQ---TILRS-AEPILSP--AWSPDGKK-LAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFS 256 (433)
T ss_pred EEEEEECCCCCCce---EeecC-CCccccc--cCCCCCCE-EEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceEC
Confidence 36778887544332 22222 3333344 44899884 444442 346999999888765554456666688999
Q ss_pred CCCCEEEEE-ecCC--cEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeC-CCc--EEEEEccCCCcceEEEcc
Q 013184 288 PDGKLLVIV-GDNP--EGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQ-DKT--CRVWDVRNLSKSVAVLKG 361 (448)
Q Consensus 288 p~~~~l~~~-~~d~--~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~-d~~--i~iwd~~~~~~~~~~~~~ 361 (448)
|+|+.|+.. +.++ .|++||+.+++. ..+..+.......+|+|+|+.|+.++. ++. |.++++.. .....+..
T Consensus 257 pDG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~--g~~~~lt~ 333 (433)
T PRK04922 257 PDGRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASG--GSAERLTF 333 (433)
T ss_pred CCCCEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC--CCeEEeec
Confidence 999987654 4444 699999988875 445556555567899999998887664 455 55555543 23344443
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCC---eEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEecCCcceEEEEec
Q 013184 362 NLGAIRSIRFTSDGNFMAMAEPAD---FVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDRTYGSLLQYNR 437 (448)
Q Consensus 362 ~~~~v~~l~~sp~g~~l~s~~~d~---~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~~~~ll~~~~ 437 (448)
+......++|||+|++|+..+.++ .|.+||+.++... .+. +......++|+|||+.|+..+.++....+..+..
T Consensus 334 ~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~ 410 (433)
T PRK04922 334 QGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVST 410 (433)
T ss_pred CCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 334455789999999998876443 6999999887654 332 3334567899999999998887765556665544
No 207
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=4.6e-13 Score=133.20 Aligned_cols=211 Identities=18% Similarity=0.182 Sum_probs=142.2
Q ss_pred eEEEEe--cCCEEEEEeCC---CeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCC--cEEEEec
Q 013184 194 VSTLAV--RDNLLIAGGFQ---GELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDC--GVRDFDM 266 (448)
Q Consensus 194 i~~l~~--~~~~lvsg~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg--~v~iwd~ 266 (448)
+.+.++ +++.|+..+.. ..|.+|++...... .+. ...+...... ++|+|..++++.+.+| .|++||+
T Consensus 206 v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~---~l~-~~~g~~~~~~--~SpDG~~l~~~~s~~g~~~Iy~~d~ 279 (433)
T PRK04922 206 ILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE---LVA-SFRGINGAPS--FSPDGRRLALTLSRDGNPEIYVMDL 279 (433)
T ss_pred cccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE---Eec-cCCCCccCce--ECCCCCEEEEEEeCCCCceEEEEEC
Confidence 344444 78888877643 46999999765532 121 1223333444 4999987767776666 5999999
Q ss_pred CCceEEEEeecCCCeeEEEECCCCCEEEEEec-CC--cEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCC-
Q 013184 267 ERFQLSKHFSFPWPVNHTSLSPDGKLLVIVGD-NP--EGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDK- 342 (448)
Q Consensus 267 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~--~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~- 342 (448)
.+++......+.......+|+|+|+.|+.++. .+ .|.++++.+++.. .+..+......++|+|+|++|+..+.++
T Consensus 280 ~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~ 358 (433)
T PRK04922 280 GSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE-RLTFQGNYNARASVSPDGKKIAMVHGSGG 358 (433)
T ss_pred CCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEECCCC
Confidence 98887655545555678899999999988774 33 4777787776643 3333334455789999999998776543
Q ss_pred --cEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEECCCCceeeeeecCcCceEEEEEcc
Q 013184 343 --TCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPA---DFVHVYDAKNGFEKEQEIDFFGEISGMTFSP 415 (448)
Q Consensus 343 --~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d---~~v~vwd~~~~~~~~~~~~~~~~v~~~~fsp 415 (448)
.|.+||+.. +.. ..+.. ........|+|+|++|+..+.+ ..|.++++. +.....+..+.+.+..++|+|
T Consensus 359 ~~~I~v~d~~~-g~~-~~Lt~-~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 359 QYRIAVMDLST-GSV-RTLTP-GSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD-GRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred ceeEEEEECCC-CCe-EECCC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEEcccCCCCCCCCccCC
Confidence 589999865 333 34442 2244567999999998877653 468888875 445555555667788888987
No 208
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.58 E-value=6.3e-12 Score=111.95 Aligned_cols=234 Identities=15% Similarity=0.152 Sum_probs=157.5
Q ss_pred eeEEEEecCCEEEE-EeCC------CeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEe
Q 013184 193 QVSTLAVRDNLLIA-GGFQ------GELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFD 265 (448)
Q Consensus 193 ~i~~l~~~~~~lvs-g~~d------g~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd 265 (448)
.+.-|-+..++|+. ||.. ..|.|||-......... .-...+.++.+ .++ ++++.- .+.|+||.
T Consensus 50 ~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~~i~el----~f~~~I~~V~l--~r~---riVvvl-~~~I~Vyt 119 (346)
T KOG2111|consen 50 KIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKERCIIEL----SFNSEIKAVKL--RRD---RIVVVL-ENKIYVYT 119 (346)
T ss_pred hhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCcEEEEE----EeccceeeEEE--cCC---eEEEEe-cCeEEEEE
Confidence 35556665665544 3332 47899993333322222 22345667776 322 455543 57899998
Q ss_pred cC-CceEEEEee---cCCCeeEEEECCCCCEEEE-EecCCcEEEEECCCCce--eEeeecCCCcEEEEEEcCCCCEEEEE
Q 013184 266 ME-RFQLSKHFS---FPWPVNHTSLSPDGKLLVI-VGDNPEGILVDSQTGKA--IMPLCGHLDFSFASAWHPDGRIFATG 338 (448)
Q Consensus 266 ~~-~~~~~~~~~---~~~~v~~~~~sp~~~~l~~-~~~d~~i~i~d~~~~~~--~~~l~~h~~~v~~~~~~p~g~~l~s~ 338 (448)
.. .-+.+..+. .+..+.+++-+.+..+||. |-.-|.|+|-|+...+. ...+.+|...|.+++.+-+|..+||+
T Consensus 120 F~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATa 199 (346)
T KOG2111|consen 120 FPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATA 199 (346)
T ss_pred cCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEe
Confidence 86 455555555 3444433333334444443 34568999999876655 46788999999999999999999999
Q ss_pred eCCCc-EEEEEccCCCcceEEEccC--CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeee---------------
Q 013184 339 NQDKT-CRVWDVRNLSKSVAVLKGN--LGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQ--------------- 400 (448)
Q Consensus 339 ~~d~~-i~iwd~~~~~~~~~~~~~~--~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~--------------- 400 (448)
+..|+ |||||..+ +..+..+.-. ...|.+++|||++.+||+++..|+|+||.++......+
T Consensus 200 StkGTLIRIFdt~~-g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky 278 (346)
T KOG2111|consen 200 STKGTLIRIFDTED-GTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKY 278 (346)
T ss_pred ccCcEEEEEEEcCC-CcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCCCCccccccccccccccchh
Confidence 99997 89999987 7777777632 35799999999999999999999999998865321111
Q ss_pred ---------eecCcCceEEEEEccCCCeEEEEEecCCcceEEEEec
Q 013184 401 ---------EIDFFGEISGMTFSPDTEALFIGVWDRTYGSLLQYNR 437 (448)
Q Consensus 401 ---------~~~~~~~v~~~~fspdg~~L~~~~~D~~~~~ll~~~~ 437 (448)
+.-..+...-++|-.+...+++.+.||++.++.....
T Consensus 279 ~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~f~~~ 324 (346)
T KOG2111|consen 279 FSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSYYKFKFDPK 324 (346)
T ss_pred cccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcEEEEEeccc
Confidence 1111234555677777667777788888877766554
No 209
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=2.8e-13 Score=122.27 Aligned_cols=216 Identities=15% Similarity=0.171 Sum_probs=150.1
Q ss_pred EEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCC----ce--------
Q 013184 203 LLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMER----FQ-------- 270 (448)
Q Consensus 203 ~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~----~~-------- 270 (448)
-++++..|-.|++|+-..... ..+.......+.+++| -|.+...|+.|+. +.|.+|.... +.
T Consensus 112 ~fava~nddvVriy~ksst~p---t~Lks~sQrnvtclaw--RPlsaselavgCr-~gIciW~~s~tln~~r~~~~~s~~ 185 (445)
T KOG2139|consen 112 AFAVATNDDVVRIYDKSSTCP---TKLKSVSQRNVTCLAW--RPLSASELAVGCR-AGICIWSDSRTLNANRNIRMMSTH 185 (445)
T ss_pred hhhhhccCcEEEEeccCCCCC---ceecchhhcceeEEEe--ccCCcceeeeeec-ceeEEEEcCccccccccccccccc
Confidence 467888999999998765322 3333333444556655 7888778888876 4588997542 11
Q ss_pred EEEEee--cCCCeeEEEECCCCCEEEEEe-cCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEE
Q 013184 271 LSKHFS--FPWPVNHTSLSPDGKLLVIVG-DNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVW 347 (448)
Q Consensus 271 ~~~~~~--~~~~v~~~~~sp~~~~l~~~~-~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iw 347 (448)
..+.++ ...+|+++.|.+||..+++++ .+..|.|||..+++.+....-..+.+.-+.|||||.+|..+.-|+..++|
T Consensus 186 ~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw 265 (445)
T KOG2139|consen 186 HLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLW 265 (445)
T ss_pred chhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeee
Confidence 112233 236799999999999999987 56789999999998765543445678889999999999999999999999
Q ss_pred EccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----------eeeeee-------------c
Q 013184 348 DVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGF-----------EKEQEI-------------D 403 (448)
Q Consensus 348 d~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~-----------~~~~~~-------------~ 403 (448)
...+......-.. ..+.|...+|+|.|++|+.+.... -++|.+.... ....++ -
T Consensus 266 ~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~~sgs-p~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l 343 (445)
T KOG2139|consen 266 QENQSWTKERWIL-GSGRVQTACWSPCGSFLLFACSGS-PRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRL 343 (445)
T ss_pred hhcccceecceec-cCCceeeeeecCCCCEEEEEEcCC-ceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCccc
Confidence 6654233333333 345899999999999888765443 3455432110 000110 1
Q ss_pred CcCceEEEEEccCCCeEEEEEec
Q 013184 404 FFGEISGMTFSPDTEALFIGVWD 426 (448)
Q Consensus 404 ~~~~v~~~~fspdg~~L~~~~~D 426 (448)
..+++.+++|.|.|++|++.-..
T Consensus 344 ~cgeaq~lawDpsGeyLav~fKg 366 (445)
T KOG2139|consen 344 CCGEAQCLAWDPSGEYLAVIFKG 366 (445)
T ss_pred ccCccceeeECCCCCEEEEEEcC
Confidence 24689999999999999987544
No 210
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=2.2e-13 Score=137.83 Aligned_cols=189 Identities=17% Similarity=0.228 Sum_probs=139.2
Q ss_pred cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCce---EEEEee
Q 013184 200 RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQ---LSKHFS 276 (448)
Q Consensus 200 ~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~---~~~~~~ 276 (448)
...+|+++|.-..|+|||.....+. ..+....+..+.++.- +...+..+++|..||.||+||.+.-. .+...+
T Consensus 1176 ~~G~Ll~tGd~r~IRIWDa~~E~~~--~diP~~s~t~vTaLS~--~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R 1251 (1387)
T KOG1517|consen 1176 QSGHLLVTGDVRSIRIWDAHKEQVV--ADIPYGSSTLVTALSA--DLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYR 1251 (1387)
T ss_pred hCCeEEecCCeeEEEEEecccceeE--eecccCCCccceeecc--cccCCceEEEeecCCceEEeecccCCccccceeec
Confidence 4455555555889999999877543 4444445555555543 22234489999999999999987532 344444
Q ss_pred -cCCC--eeEEEECCCCC-EEEEEecCCcEEEEECCCCceeE--eeecCC--C-cEEEEEEcCCCCEEEEEeCCCcEEEE
Q 013184 277 -FPWP--VNHTSLSPDGK-LLVIVGDNPEGILVDSQTGKAIM--PLCGHL--D-FSFASAWHPDGRIFATGNQDKTCRVW 347 (448)
Q Consensus 277 -~~~~--v~~~~~sp~~~-~l~~~~~d~~i~i~d~~~~~~~~--~l~~h~--~-~v~~~~~~p~g~~l~s~~~d~~i~iw 347 (448)
|... |..+.+.+.|- .|++|+.+|.|++||++...... ++..|. + ..+++..|++...+|+|+. +.|+||
T Consensus 1252 ~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy 1330 (1387)
T KOG1517|consen 1252 EHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIY 1330 (1387)
T ss_pred ccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEE
Confidence 6655 99999998665 49999999999999999843222 223343 3 4899999999999999998 899999
Q ss_pred EccCCCcceEEEccC-------CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 013184 348 DVRNLSKSVAVLKGN-------LGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNG 395 (448)
Q Consensus 348 d~~~~~~~~~~~~~~-------~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~ 395 (448)
++. +..+..++.+ .+.+.|++|+|..-.||+|+.|.+|.||....+
T Consensus 1331 ~~~--G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1331 SLS--GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred ecC--hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 996 4555444433 346899999999999999999999999987654
No 211
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=1.4e-12 Score=130.10 Aligned_cols=268 Identities=16% Similarity=0.148 Sum_probs=175.2
Q ss_pred eeeCCCCeEEEecCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe---cC--CEEEEEeCCCeE
Q 013184 139 VWSTSKHDVYLMSHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV---RD--NLLIAGGFQGEL 213 (448)
Q Consensus 139 ~~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~---~~--~~lvsg~~dg~i 213 (448)
+.......++...+..|.++++.|+.... .+.+|..| +.++.+ .. .++++++.+|.|
T Consensus 23 vfSnD~k~l~~~~~~~V~VyS~~Tg~~i~--~l~~~~a~----------------l~s~~~~~~~~~~~~~~~~sl~G~I 84 (792)
T KOG1963|consen 23 VFSNDAKFLFLCTGNFVKVYSTATGECIT--SLEDHTAP----------------LTSVIVLPSSENANYLIVCSLDGTI 84 (792)
T ss_pred ccccCCcEEEEeeCCEEEEEecchHhhhh--hcccccCc----------------cceeeecCCCccceEEEEEecCccE
Confidence 44556667788889999999987765444 66777776 445544 22 678899999999
Q ss_pred EEEEcCCCCceeEEEeecCCCCceeeEEE----E-------eCCCCCeeEEEEe--CCCcEEEEecCCce--EEEEeecC
Q 013184 214 ICKYLDQPGVSFCSRTTYDENAITNAVEI----Y-------NSPSGGIHFMASN--NDCGVRDFDMERFQ--LSKHFSFP 278 (448)
Q Consensus 214 ~vw~~~~~~~~~~~~~~~~~~~~~~~v~~----~-------~~~~~~~~l~s~s--~dg~v~iwd~~~~~--~~~~~~~~ 278 (448)
++|+...+..........+ +.++.+ + .+......+.+.+ .-++++-+.+.+.. ........
T Consensus 85 ~vwd~~~~~Llkt~~~~~~----v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~ 160 (792)
T KOG1963|consen 85 RVWDWSDGELLKTFDNNLP----VHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEH 160 (792)
T ss_pred EEecCCCcEEEEEEecCCc----eeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhh
Confidence 9999987664322111111 111111 0 0011111111111 11112212221110 00001111
Q ss_pred CCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEe----eecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccC---
Q 013184 279 WPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMP----LCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRN--- 351 (448)
Q Consensus 279 ~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~----l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~--- 351 (448)
..-.++.+++.|...+..... .+.+|...++..... -..|.-.+++.++||+++++|+|..||.|.+|.--.
T Consensus 161 ~~~~~I~~~~~ge~~~i~~~~-~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~ 239 (792)
T KOG1963|consen 161 QEPKSIVDNNSGEFKGIVHMC-KIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSD 239 (792)
T ss_pred cCCccEEEcCCceEEEEEEee-eEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccc
Confidence 114678888888777766665 678888776541110 113666689999999999999999999999997532
Q ss_pred CCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEecCCcc
Q 013184 352 LSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDRTYG 430 (448)
Q Consensus 352 ~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~~~ 430 (448)
.....+.+.-|...|.++.|+++|.+|++|+..|.+.+|.+.+++ ..-++...++|..+.+|||+.+.+....|..+-
T Consensus 240 ~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~ 317 (792)
T KOG1963|consen 240 DSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIH 317 (792)
T ss_pred ccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEE
Confidence 123456777899999999999999999999999999999999987 444566778999999999999998888886543
No 212
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=2.1e-13 Score=123.09 Aligned_cols=171 Identities=18% Similarity=0.291 Sum_probs=127.9
Q ss_pred eEEEEeCCCcEEEEecCCceEEEEee--cCCCeeEEEECCC-CCEEEEEecCCcEEEEECCC----Cce----------e
Q 013184 251 HFMASNNDCGVRDFDMERFQLSKHFS--FPWPVNHTSLSPD-GKLLVIVGDNPEGILVDSQT----GKA----------I 313 (448)
Q Consensus 251 ~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~~v~~~~~sp~-~~~l~~~~~d~~i~i~d~~~----~~~----------~ 313 (448)
.++++.+|-.|++|+-.. ++...++ ....|.|++|.|. ++.|++|+.. -|.||.... ++. +
T Consensus 112 ~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r~~~~~s~~~~qv 189 (445)
T KOG2139|consen 112 AFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANRNIRMMSTHHLQV 189 (445)
T ss_pred hhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccccccccccccchhh
Confidence 578899999999999776 5444555 4677999999994 4566677665 588997532 111 1
Q ss_pred EeeecCCCcEEEEEEcCCCCEEEEEeC-CCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 013184 314 MPLCGHLDFSFASAWHPDGRIFATGNQ-DKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDA 392 (448)
Q Consensus 314 ~~l~~h~~~v~~~~~~p~g~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~ 392 (448)
..-.+| .+|++++|.+||..+++++- +..|.|||..+ +..+.......+.+.-++|||||.+|.++..|+..++|+.
T Consensus 190 l~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdt-g~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e 267 (445)
T KOG2139|consen 190 LQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDT-GQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQE 267 (445)
T ss_pred eeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCC-CCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehh
Confidence 122244 78999999999999999875 56899999976 4444333345677889999999999999999999999965
Q ss_pred CCCceeeeeecCcCceEEEEEccCCCeEEEEEe
Q 013184 393 KNGFEKEQEIDFFGEISGMTFSPDTEALFIGVW 425 (448)
Q Consensus 393 ~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~ 425 (448)
........-.-..+.|.+.+|+|+|++|+.++.
T Consensus 268 ~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s 300 (445)
T KOG2139|consen 268 NQSWTKERWILGSGRVQTACWSPCGSFLLFACS 300 (445)
T ss_pred cccceecceeccCCceeeeeecCCCCEEEEEEc
Confidence 544433333444569999999999998876654
No 213
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=5.3e-14 Score=129.46 Aligned_cols=195 Identities=16% Similarity=0.158 Sum_probs=142.6
Q ss_pred eeEEEEecCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEE
Q 013184 193 QVSTLAVRDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLS 272 (448)
Q Consensus 193 ~i~~l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~ 272 (448)
.+.++..+|..|++|+.||.+|+|++...... . ....|.+.+..+.| +|+|. .|++-+.| ..+||+++++..+
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~--l-~e~~~~~eV~DL~F--S~dgk-~lasig~d-~~~VW~~~~g~~~ 220 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTI--L-EEIAHHAEVKDLDF--SPDGK-FLASIGAD-SARVWSVNTGAAL 220 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhh--h-hhHhhcCcccccee--CCCCc-EEEEecCC-ceEEEEeccCchh
Confidence 45555558899999999999999997655432 1 22234455677776 99987 78888888 9999999998665
Q ss_pred EEee---cCCCeeEEEECCCC---C--EEEEEecCCcEEEEECCCCce-----eEeeecCCCcEEEEEEcCCCCEEEEEe
Q 013184 273 KHFS---FPWPVNHTSLSPDG---K--LLVIVGDNPEGILVDSQTGKA-----IMPLCGHLDFSFASAWHPDGRIFATGN 339 (448)
Q Consensus 273 ~~~~---~~~~v~~~~~sp~~---~--~l~~~~~d~~i~i~d~~~~~~-----~~~l~~h~~~v~~~~~~p~g~~l~s~~ 339 (448)
.... .+.....+.|+.++ . +++.....+.|+.|++...+. ..+.......|.+++.+++|+++|.|+
T Consensus 221 a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT 300 (398)
T KOG0771|consen 221 ARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGT 300 (398)
T ss_pred hhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEec
Confidence 5544 34556778888766 2 333334556677766543221 111112335789999999999999999
Q ss_pred CCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 013184 340 QDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKN 394 (448)
Q Consensus 340 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~ 394 (448)
.||.|-|++..........-+.|...|+.+.|+|+.+++++-+.+....|.-+.-
T Consensus 301 ~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 301 MDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred cCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 9999999999774444455568999999999999999999999998888887654
No 214
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.57 E-value=3.4e-13 Score=118.31 Aligned_cols=139 Identities=17% Similarity=0.240 Sum_probs=100.6
Q ss_pred eEEEECCCCCEEEEEec----------CCcEEEEECC-CCceeEeeec-CCCcEEEEEEcCCCCEEEEE--eCCCcEEEE
Q 013184 282 NHTSLSPDGKLLVIVGD----------NPEGILVDSQ-TGKAIMPLCG-HLDFSFASAWHPDGRIFATG--NQDKTCRVW 347 (448)
Q Consensus 282 ~~~~~sp~~~~l~~~~~----------d~~i~i~d~~-~~~~~~~l~~-h~~~v~~~~~~p~g~~l~s~--~~d~~i~iw 347 (448)
..+.|+|+|..|++-.. -+...||-++ .+..+..+.- ..++|.+++|+|+|+.||+. ..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 36778999988776543 1234444442 2233444433 34579999999999987654 467799999
Q ss_pred EccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEE
Q 013184 348 DVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPA---DFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGV 424 (448)
Q Consensus 348 d~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d---~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~ 424 (448)
|++ ...+..+. ...++.+.|||+|++|++|+.+ |.|.+||+++.+.+.... | ..++.++|+|||++|++++
T Consensus 89 d~~--~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~ 162 (194)
T PF08662_consen 89 DVK--GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLATAT 162 (194)
T ss_pred cCc--ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEEE
Confidence 996 56666554 4678899999999999998754 579999999777665443 3 3478999999999999997
Q ss_pred ec
Q 013184 425 WD 426 (448)
Q Consensus 425 ~D 426 (448)
..
T Consensus 163 t~ 164 (194)
T PF08662_consen 163 TS 164 (194)
T ss_pred ec
Confidence 64
No 215
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=4.6e-12 Score=126.18 Aligned_cols=211 Identities=16% Similarity=0.140 Sum_probs=142.8
Q ss_pred eEEEEe--cCCEEEEEeC---CCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCc--EEEEec
Q 013184 194 VSTLAV--RDNLLIAGGF---QGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCG--VRDFDM 266 (448)
Q Consensus 194 i~~l~~--~~~~lvsg~~---dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~--v~iwd~ 266 (448)
+.+.++ +++.|+..+. +..|.+|++.+.... .+. ...+.+.... ++|+|..++++.+.++. |.+||+
T Consensus 204 v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~---~l~-~~~g~~~~~~--~SPDG~~la~~~~~~g~~~Iy~~d~ 277 (435)
T PRK05137 204 VLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE---LVG-NFPGMTFAPR--FSPDGRKVVMSLSQGGNTDIYTMDL 277 (435)
T ss_pred eEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE---Eee-cCCCcccCcE--ECCCCCEEEEEEecCCCceEEEEEC
Confidence 555555 8888887764 468999999776532 222 2233333444 49999877777776665 777799
Q ss_pred CCceEEEEeecCCCeeEEEECCCCCEEEEEecC---CcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCC--
Q 013184 267 ERFQLSKHFSFPWPVNHTSLSPDGKLLVIVGDN---PEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQD-- 341 (448)
Q Consensus 267 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d---~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d-- 341 (448)
.+++......+........|+|+|+.|+..+.. ..|.++|+.+++. ..+..+...+....|+|+|++|+..+.+
T Consensus 278 ~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~ 356 (435)
T PRK05137 278 RSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-RRISFGGGRYSTPVWSPRGDLIAFTKQGGG 356 (435)
T ss_pred CCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-EEeecCCCcccCeEECCCCCEEEEEEcCCC
Confidence 888776655566667789999999999887743 3688889876654 3444345556678999999999887654
Q ss_pred -CcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCC------CeEEEEECCCCceeeeeecCcCceEEEEEc
Q 013184 342 -KTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPA------DFVHVYDAKNGFEKEQEIDFFGEISGMTFS 414 (448)
Q Consensus 342 -~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d------~~v~vwd~~~~~~~~~~~~~~~~v~~~~fs 414 (448)
..|.+||+.. .....+.. ...+..+.|+|||++|+..+.+ ..|+++|+..+.. ..+. ..+.+...+|+
T Consensus 357 ~~~i~~~d~~~--~~~~~lt~-~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~-~~~~~~~p~Ws 431 (435)
T PRK05137 357 QFSIGVMKPDG--SGERILTS-GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVP-TPGDASDPAWS 431 (435)
T ss_pred ceEEEEEECCC--CceEeccC-CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEcc-CCCCccCcccC
Confidence 2577788743 33344432 2346788999999998876543 2688889866544 3433 35567788888
Q ss_pred cC
Q 013184 415 PD 416 (448)
Q Consensus 415 pd 416 (448)
|-
T Consensus 432 p~ 433 (435)
T PRK05137 432 PL 433 (435)
T ss_pred CC
Confidence 73
No 216
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.55 E-value=3.3e-12 Score=113.77 Aligned_cols=229 Identities=13% Similarity=0.114 Sum_probs=157.2
Q ss_pred eEEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCC------CcEEEEe
Q 013184 194 VSTLAV--RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNND------CGVRDFD 265 (448)
Q Consensus 194 i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d------g~v~iwd 265 (448)
..++++ +..-+++|..+| .+||+.+--+...... ....+ ...+.+.+ .. +.+.++|+.. ..|.|||
T Consensus 8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~--~~~~G-~~~veMLf-R~-N~laLVGGg~~pky~pNkviIWD 81 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQ--FIDGG-FKIVEMLF-RS-NYLALVGGGSRPKYPPNKVIIWD 81 (346)
T ss_pred eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhc--cccCc-hhhhhHhh-hh-ceEEEecCCCCCCCCCceEEEEe
Confidence 344667 556666666666 5899887533221111 11112 22333322 22 2244455443 5799999
Q ss_pred cCCceEEEEeecCCCeeEEEECCCCCEEEEEecCCcEEEEECC-CCceeEeeecC--CCcEEEEEEcCCCCEEEE-EeCC
Q 013184 266 MERFQLSKHFSFPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQ-TGKAIMPLCGH--LDFSFASAWHPDGRIFAT-GNQD 341 (448)
Q Consensus 266 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~-~~~~~~~l~~h--~~~v~~~~~~p~g~~l~s-~~~d 341 (448)
=...+++..+.+..+|.++.++++ .|+++-. +.|.+|... +.+.++.+..- ...+.+++-+.+..+||. |..-
T Consensus 82 D~k~~~i~el~f~~~I~~V~l~r~--riVvvl~-~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~ 158 (346)
T KOG2111|consen 82 DLKERCIIELSFNSEIKAVKLRRD--RIVVVLE-NKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKT 158 (346)
T ss_pred cccCcEEEEEEeccceeeEEEcCC--eEEEEec-CeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCcc
Confidence 888889999999999999999864 5665554 489999887 55666666532 233333332223344544 4456
Q ss_pred CcEEEEEccCCCc-ceEEEccCCCCeEEEEEcCCCCEEEEEeCCCe-EEEEECCCCceeeeeec--CcCceEEEEEccCC
Q 013184 342 KTCRVWDVRNLSK-SVAVLKGNLGAIRSIRFTSDGNFMAMAEPADF-VHVYDAKNGFEKEQEID--FFGEISGMTFSPDT 417 (448)
Q Consensus 342 ~~i~iwd~~~~~~-~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~-v~vwd~~~~~~~~~~~~--~~~~v~~~~fspdg 417 (448)
|.|+|-|+..... ....+.+|.+.|.|++.+-+|..||+|+..|+ |+|||..+|..+..+.. -...|.+|+|||++
T Consensus 159 GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~ 238 (346)
T KOG2111|consen 159 GQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNS 238 (346)
T ss_pred ceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCc
Confidence 8999999976333 35788999999999999999999999999995 89999999998877653 23579999999999
Q ss_pred CeEEEEEecCCcce
Q 013184 418 EALFIGVWDRTYGS 431 (448)
Q Consensus 418 ~~L~~~~~D~~~~~ 431 (448)
.+|++++.-||+..
T Consensus 239 s~LavsSdKgTlHi 252 (346)
T KOG2111|consen 239 SWLAVSSDKGTLHI 252 (346)
T ss_pred cEEEEEcCCCeEEE
Confidence 99999887766543
No 217
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.55 E-value=1.2e-14 Score=143.50 Aligned_cols=232 Identities=14% Similarity=0.144 Sum_probs=165.2
Q ss_pred eeEEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCce
Q 013184 193 QVSTLAV--RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQ 270 (448)
Q Consensus 193 ~i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~ 270 (448)
.|+|..+ .|.++++|+.|..++||...+.... ....+|.+-+.-+++ +..+..++++++|..|++|.+..+.
T Consensus 192 aVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~l---As~rGhs~ditdlav---s~~n~~iaaaS~D~vIrvWrl~~~~ 265 (1113)
T KOG0644|consen 192 AVYCAIFDRTGRYIITGSDDRLVKIWSMETARCL---ASCRGHSGDITDLAV---SSNNTMIAAASNDKVIRVWRLPDGA 265 (1113)
T ss_pred heeeeeeccccceEeecCccceeeeeeccchhhh---ccCCCCccccchhcc---chhhhhhhhcccCceEEEEecCCCc
Confidence 5888888 7899999999999999997765532 222344444445554 4445589999999999999999999
Q ss_pred EEEEee-cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCce--------------eEeee----------c------C
Q 013184 271 LSKHFS-FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKA--------------IMPLC----------G------H 319 (448)
Q Consensus 271 ~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~--------------~~~l~----------~------h 319 (448)
++..+. |.+.|++++|+|-. +.+.||++++||.+-.-. +..+. + .
T Consensus 266 pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~ 341 (1113)
T KOG0644|consen 266 PVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEAR 341 (1113)
T ss_pred hHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccc
Confidence 998887 99999999999954 678999999999871110 00000 0 0
Q ss_pred CCcEEEEEEcCCCCEEEEEe-----------CCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCC-CEEEEEeCCCeE
Q 013184 320 LDFSFASAWHPDGRIFATGN-----------QDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDG-NFMAMAEPADFV 387 (448)
Q Consensus 320 ~~~v~~~~~~p~g~~l~s~~-----------~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g-~~l~s~~~d~~v 387 (448)
......++|..++-.+++++ .+..+++|++.. +..++.+.+|...+..+.++|-. +...+++.||..
T Consensus 342 n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~-g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst 420 (1113)
T KOG0644|consen 342 NHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYT-GQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGST 420 (1113)
T ss_pred cchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeeccc-chhhhhhcccccceeeeeecCCCcHhhhhccCCCce
Confidence 01122334444443344433 344567888865 77888899999999999999955 556678999999
Q ss_pred EEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEecCCcceEEEEecc
Q 013184 388 HVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDRTYGSLLQYNRC 438 (448)
Q Consensus 388 ~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~~~~ll~~~~~ 438 (448)
.|||+..|..+.......+.+...+||+||..++..- ..|.++.+..+
T Consensus 421 ~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd---~hgql~i~g~g 468 (1113)
T KOG0644|consen 421 IIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSD---DHGQLYILGTG 468 (1113)
T ss_pred EeeecccCCcceeeecccceeeccccCCCCceEecCC---CCCceEEeccC
Confidence 9999999887755444356778889999998876542 23555554443
No 218
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.54 E-value=6.9e-13 Score=121.00 Aligned_cols=233 Identities=15% Similarity=0.113 Sum_probs=170.6
Q ss_pred eeEEEEe----cCCEEEEEeCCCeEEEEEcCCCCceeEE---EeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEe
Q 013184 193 QVSTLAV----RDNLLIAGGFQGELICKYLDQPGVSFCS---RTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFD 265 (448)
Q Consensus 193 ~i~~l~~----~~~~lvsg~~dg~i~vw~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd 265 (448)
.|+++++ ....|+..+.+-.+....+......... .......+.+..+.. .+| .|++|-.+|.+.+|.
T Consensus 57 ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~---~dg--~Litc~~sG~l~~~~ 131 (412)
T KOG3881|consen 57 RISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKL---ADG--TLITCVSSGNLQVRH 131 (412)
T ss_pred hhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhh---cCC--EEEEEecCCcEEEEe
Confidence 5777777 3345666656666666555554432211 011111122222221 334 688889999999999
Q ss_pred cCCce----EEEEeecCCCeeEEEECCCCC-EEEEEecC--CcEEEEECCCCceeEeeecC---------CCcEEEEEEc
Q 013184 266 MERFQ----LSKHFSFPWPVNHTSLSPDGK-LLVIVGDN--PEGILVDSQTGKAIMPLCGH---------LDFSFASAWH 329 (448)
Q Consensus 266 ~~~~~----~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d--~~i~i~d~~~~~~~~~l~~h---------~~~v~~~~~~ 329 (448)
.+.+. .+..+....++..+.-+|... .+++||.. ..+.|||+...+.+.+-+.- .-.++.+.|-
T Consensus 132 ~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl 211 (412)
T KOG3881|consen 132 DKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFL 211 (412)
T ss_pred ccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceec
Confidence 87432 333344445677777777544 55568877 78999999988665543321 1235678888
Q ss_pred CC--CCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeee-eecCcC
Q 013184 330 PD--GRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQ-EIDFFG 406 (448)
Q Consensus 330 p~--g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~-~~~~~~ 406 (448)
|. ...||+++.-+.+|+||.+...+++..+.....+|+++...|.|++|++|..-+.+..||++.++.... +.+..|
T Consensus 212 ~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tG 291 (412)
T KOG3881|consen 212 EGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITG 291 (412)
T ss_pred CCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccC
Confidence 86 789999999999999999987889999999999999999999999999999999999999999988766 777889
Q ss_pred ceEEEEEccCCCeEEEEEecCCcc
Q 013184 407 EISGMTFSPDTEALFIGVWDRTYG 430 (448)
Q Consensus 407 ~v~~~~fspdg~~L~~~~~D~~~~ 430 (448)
.|.+|..+|.+++|++++-|+-++
T Consensus 292 sirsih~hp~~~~las~GLDRyvR 315 (412)
T KOG3881|consen 292 SIRSIHCHPTHPVLASCGLDRYVR 315 (412)
T ss_pred CcceEEEcCCCceEEeeccceeEE
Confidence 999999999999999999997654
No 219
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.54 E-value=2e-13 Score=121.36 Aligned_cols=191 Identities=17% Similarity=0.180 Sum_probs=148.8
Q ss_pred eeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCce---EEEEee-cCCCeeEEEECCCCCEEEEEecCCcEEEEECCC-C-
Q 013184 237 TNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQ---LSKHFS-FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQT-G- 310 (448)
Q Consensus 237 ~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~---~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~-~- 310 (448)
+.+.++ +++.. .++++-+...|.||.....+ ...++. |...|+++.|+|..+.|++++.|...++|.... +
T Consensus 13 itchAw--n~drt-~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~ 89 (361)
T KOG1523|consen 13 ITCHAW--NSDRT-QIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGT 89 (361)
T ss_pred eeeeee--cCCCc-eEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCe
Confidence 445555 67765 78888888899999887655 455555 999999999999999999999999999998843 3
Q ss_pred -ceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCC---cceEEEccCCCCeEEEEEcCCCCEEEEEeCCCe
Q 013184 311 -KAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLS---KSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADF 386 (448)
Q Consensus 311 -~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~---~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~ 386 (448)
++...|.-+...++++.|+|.++.||+|+....|.||-..... -..+.-+.+.+.|.++.|+|++-.|++|+.|+.
T Consensus 90 WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k 169 (361)
T KOG1523|consen 90 WKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGK 169 (361)
T ss_pred eccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcc
Confidence 3444556688999999999999999999999999999875311 122333456778999999999999999999999
Q ss_pred EEEEECC-----C-------------CceeeeeecCcCceEEEEEccCCCeEEEEEecCCcc
Q 013184 387 VHVYDAK-----N-------------GFEKEQEIDFFGEISGMTFSPDTEALFIGVWDRTYG 430 (448)
Q Consensus 387 v~vwd~~-----~-------------~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~~~ 430 (448)
.+||..- . |..+.......+.|.++.|+|+|..|+-.+.|.++.
T Consensus 170 ~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~ 231 (361)
T KOG1523|consen 170 CRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVS 231 (361)
T ss_pred eeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceE
Confidence 9998641 1 112222223457899999999999999888887653
No 220
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=4.4e-12 Score=125.77 Aligned_cols=208 Identities=16% Similarity=0.149 Sum_probs=135.6
Q ss_pred EecCCEEEEEeCC---CeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEE--ecCCceEE
Q 013184 198 AVRDNLLIAGGFQ---GELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDF--DMERFQLS 272 (448)
Q Consensus 198 ~~~~~~lvsg~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iw--d~~~~~~~ 272 (448)
+.+++.|+..+.. ..|.+|++.++... .+.. ..+..... .++|+|..++++.+.++...|| |+.++...
T Consensus 204 SPDG~~la~~s~~~~~~~I~~~dl~~g~~~---~l~~-~~g~~~~~--~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~ 277 (427)
T PRK02889 204 SPDGTKLAYVSFESKKPVVYVHDLATGRRR---VVAN-FKGSNSAP--AWSPDGRTLAVALSRDGNSQIYTVNADGSGLR 277 (427)
T ss_pred cCCCCEEEEEEccCCCcEEEEEECCCCCEE---Eeec-CCCCccce--EECCCCCEEEEEEccCCCceEEEEECCCCCcE
Confidence 3488888877643 35999999776532 2221 12233344 4499998666777888876666 45555544
Q ss_pred EEeecCCCeeEEEECCCCCEEEEEec-CCcEEEE--ECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCC---cEEE
Q 013184 273 KHFSFPWPVNHTSLSPDGKLLVIVGD-NPEGILV--DSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDK---TCRV 346 (448)
Q Consensus 273 ~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~i~i~--d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~---~i~i 346 (448)
....+........|+|+|+.|+..+. .+...|| ++.+++.. .+..+.......+|+|+|++|+..+.++ .|.+
T Consensus 278 ~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v 356 (427)
T PRK02889 278 RLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ-RVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYV 356 (427)
T ss_pred ECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-EEecCCCCcCceEECCCCCEEEEEEccCCcEEEEE
Confidence 33335555677899999999887764 3455555 54555432 2322333445678999999998877654 5999
Q ss_pred EEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCC---eEEEEECCCCceeeeeecCcCceEEEEEccC
Q 013184 347 WDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPAD---FVHVYDAKNGFEKEQEIDFFGEISGMTFSPD 416 (448)
Q Consensus 347 wd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~---~v~vwd~~~~~~~~~~~~~~~~v~~~~fspd 416 (448)
||+.. +. ...+... .....+.|+|+|++|+.++.++ .+++.++ .+.....+..+.+.+...+|+|-
T Consensus 357 ~d~~~-g~-~~~lt~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 357 QDLAT-GQ-VTALTDT-TRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred EECCC-CC-eEEccCC-CCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCCCCccCCC
Confidence 99865 33 3334322 3346789999999998887554 4667776 45555556666788888999884
No 221
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.52 E-value=7.9e-11 Score=113.63 Aligned_cols=262 Identities=20% Similarity=0.222 Sum_probs=159.8
Q ss_pred cCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEecCCEEEEEeCCCeEEEEEcCCCCceeEEEee
Q 013184 151 SHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAVRDNLLIAGGFQGELICKYLDQPGVSFCSRTT 230 (448)
Q Consensus 151 ~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~ 230 (448)
.+++|.+.|..+.+....+...+.. + ....++.+++++++++.||.|.++|+.+.+... .+.
T Consensus 14 ~~~~v~viD~~t~~~~~~i~~~~~~-h---------------~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~--~i~ 75 (369)
T PF02239_consen 14 GSGSVAVIDGATNKVVARIPTGGAP-H---------------AGLKFSPDGRYLYVANRDGTVSVIDLATGKVVA--TIK 75 (369)
T ss_dssp GGTEEEEEETTT-SEEEEEE-STTE-E---------------EEEE-TT-SSEEEEEETTSEEEEEETTSSSEEE--EEE
T ss_pred CCCEEEEEECCCCeEEEEEcCCCCc-e---------------eEEEecCCCCEEEEEcCCCeEEEEECCcccEEE--EEe
Confidence 5778999998876666655443211 0 112233489999999999999999999887543 232
Q ss_pred cCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEeec--------CCCeeEEEECCCCCEEEEE-ecCCc
Q 013184 231 YDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFSF--------PWPVNHTSLSPDGKLLVIV-GDNPE 301 (448)
Q Consensus 231 ~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~--------~~~v~~~~~sp~~~~l~~~-~~d~~ 301 (448)
.. .....+.+ +++|+..+++....+.+.++|.++.++++.+.. ...+..+..+|....+++. -+.+.
T Consensus 76 ~G--~~~~~i~~--s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~ 151 (369)
T PF02239_consen 76 VG--GNPRGIAV--SPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGE 151 (369)
T ss_dssp -S--SEEEEEEE----TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTE
T ss_pred cC--CCcceEEE--cCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCe
Confidence 22 22334444 899986666777899999999999999988762 2356788888888866555 45588
Q ss_pred EEEEECCCCceeE-eeecCCCcEEEEEEcCCCCEEEEE-eCCCcEEEEEccCCC--------------------------
Q 013184 302 GILVDSQTGKAIM-PLCGHLDFSFASAWHPDGRIFATG-NQDKTCRVWDVRNLS-------------------------- 353 (448)
Q Consensus 302 i~i~d~~~~~~~~-~l~~h~~~v~~~~~~p~g~~l~s~-~~d~~i~iwd~~~~~-------------------------- 353 (448)
|.+.|....+.+. .............|+|+++|++.+ .....|-++|..+..
T Consensus 152 I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~ 231 (369)
T PF02239_consen 152 IWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGP 231 (369)
T ss_dssp EEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEE
T ss_pred EEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcce
Confidence 9888987765432 222244567789999999987765 445566666654310
Q ss_pred ----------------------------cceEEEccCCCCeEEEEEcCCCCEEEEE----eCCCeEEEEECCCCceeeee
Q 013184 354 ----------------------------KSVAVLKGNLGAIRSIRFTSDGNFMAMA----EPADFVHVYDAKNGFEKEQE 401 (448)
Q Consensus 354 ----------------------------~~~~~~~~~~~~v~~l~~sp~g~~l~s~----~~d~~v~vwd~~~~~~~~~~ 401 (448)
+.++.+....++ .-++-+|++++|.+. ...+.|.|+|.++.+....+
T Consensus 232 vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i 310 (369)
T PF02239_consen 232 VWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTI 310 (369)
T ss_dssp EEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-H
T ss_pred EEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEE
Confidence 112222222223 456779999999998 34479999999998666555
Q ss_pred ecCc-CceEEEEEccCCCeEEEEEecCCcceEEEEe
Q 013184 402 IDFF-GEISGMTFSPDTEALFIGVWDRTYGSLLQYN 436 (448)
Q Consensus 402 ~~~~-~~v~~~~fspdg~~L~~~~~D~~~~~ll~~~ 436 (448)
.... ..+..+.|+++|+.+.++.|++.- .++-++
T Consensus 311 ~~~~~~~~~h~ef~~dG~~v~vS~~~~~~-~i~v~D 345 (369)
T PF02239_consen 311 TPGPGKRVVHMEFNPDGKEVWVSVWDGNG-AIVVYD 345 (369)
T ss_dssp HHHHT--EEEEEE-TTSSEEEEEEE--TT-EEEEEE
T ss_pred eccCCCcEeccEECCCCCEEEEEEecCCC-EEEEEE
Confidence 4322 358999999999999999998752 454444
No 222
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.52 E-value=1.6e-11 Score=121.98 Aligned_cols=213 Identities=21% Similarity=0.208 Sum_probs=141.3
Q ss_pred CeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCC--CcEEEEecCCceEEEEeecCCCeeEEEECC
Q 013184 211 GELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNND--CGVRDFDMERFQLSKHFSFPWPVNHTSLSP 288 (448)
Q Consensus 211 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d--g~v~iwd~~~~~~~~~~~~~~~v~~~~~sp 288 (448)
..|.+++.+.... ..+. .+...+... .++|+|..++++...+ ..|++|++.+++......+.+.+.+++|+|
T Consensus 170 ~~l~~~d~~g~~~---~~l~-~~~~~~~~p--~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~sp 243 (417)
T TIGR02800 170 YELQVADYDGANP---QTIT-RSREPILSP--AWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSP 243 (417)
T ss_pred ceEEEEcCCCCCC---EEee-cCCCceecc--cCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECC
Confidence 3566666653332 2222 223333333 3599998544443332 479999999887665555667778899999
Q ss_pred CCCEEEEE-ecC--CcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeC-CC--cEEEEEccCCCcceEEEccC
Q 013184 289 DGKLLVIV-GDN--PEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQ-DK--TCRVWDVRNLSKSVAVLKGN 362 (448)
Q Consensus 289 ~~~~l~~~-~~d--~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~-d~--~i~iwd~~~~~~~~~~~~~~ 362 (448)
+|+.|+.. +.+ ..|++|++.+++.. .+..+........|+|+|+.|+..+. .+ .|.++++.. .....+..+
T Consensus 244 Dg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~--~~~~~l~~~ 320 (417)
T TIGR02800 244 DGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADG--GEVRRLTFR 320 (417)
T ss_pred CCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCC--CCEEEeecC
Confidence 99987754 333 36889999887643 34445444557799999998876654 33 466777753 334455555
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCC---eEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEecCCcceEEE
Q 013184 363 LGAIRSIRFTSDGNFMAMAEPAD---FVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDRTYGSLLQ 434 (448)
Q Consensus 363 ~~~v~~l~~sp~g~~l~s~~~d~---~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~~~~ll~ 434 (448)
...+..+.|+|+|++|+.+..++ .|.+||+.++... .+.. .......+|+|+|+.|+.+..++....+..
T Consensus 321 ~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~-~~~~~~p~~spdg~~l~~~~~~~~~~~l~~ 393 (417)
T TIGR02800 321 GGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTD-TGLDESPSFAPNGRMILYATTRGGRGVLGL 393 (417)
T ss_pred CCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccC-CCCCCCceECCCCCEEEEEEeCCCcEEEEE
Confidence 56677889999999999988776 7999999875433 2222 223456789999999999888765544433
No 223
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.52 E-value=8e-13 Score=127.74 Aligned_cols=222 Identities=14% Similarity=0.157 Sum_probs=164.6
Q ss_pred eeEEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCce
Q 013184 193 QVSTLAV--RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQ 270 (448)
Q Consensus 193 ~i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~ 270 (448)
.|..+++ +|..|+.+.. ..+.++|.+.++.. .....|...++++++ +.+|. ++++|+.|..|.+|...- +
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~ll---qtLKgHKDtVycVAy--s~dGk-rFASG~aDK~VI~W~~kl-E 85 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLL---QPLKGHKDTVYCVAY--AKDGK-RFASGSADKSVIIWTSKL-E 85 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCcccc---cccccccceEEEEEE--ccCCc-eeccCCCceeEEEecccc-c
Confidence 4666776 7877766653 46789998887753 345577888888887 77876 899999999999998642 2
Q ss_pred EEEEeecCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 013184 271 LSKHFSFPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVR 350 (448)
Q Consensus 271 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~ 350 (448)
-+-.+.|...|.|+.|+|-...|++++-+ ..-+|........ ..+ ....+.+++|..||++++.|-.+|+|.|-+..
T Consensus 86 G~LkYSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~-K~k-ss~R~~~CsWtnDGqylalG~~nGTIsiRNk~ 162 (1081)
T KOG1538|consen 86 GILKYSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVS-KHK-SSSRIICCSWTNDGQYLALGMFNGTISIRNKN 162 (1081)
T ss_pred ceeeeccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHH-hhh-hheeEEEeeecCCCcEEEEeccCceEEeecCC
Confidence 22345599999999999999999988765 4557875543322 111 34568899999999999999999999988653
Q ss_pred CCCcceEEE---ccCCCCeEEEEEcCCC-----CEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEE
Q 013184 351 NLSKSVAVL---KGNLGAIRSIRFTSDG-----NFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFI 422 (448)
Q Consensus 351 ~~~~~~~~~---~~~~~~v~~l~~sp~g-----~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~ 422 (448)
++....+ .+..++|.+++|+|.. ..+++.....++.+|.+. |+.+.......-...++++-|+|+++++
T Consensus 163 --gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~Li 239 (1081)
T KOG1538|consen 163 --GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILL 239 (1081)
T ss_pred --CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEE
Confidence 3332223 3467799999999964 578888888888888864 5555444444556789999999999999
Q ss_pred EEecCC
Q 013184 423 GVWDRT 428 (448)
Q Consensus 423 ~~~D~~ 428 (448)
|+.|+.
T Consensus 240 GGsdk~ 245 (1081)
T KOG1538|consen 240 GGSDKQ 245 (1081)
T ss_pred ccCCCc
Confidence 998853
No 224
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=1e-11 Score=124.06 Aligned_cols=271 Identities=14% Similarity=0.106 Sum_probs=167.2
Q ss_pred eeeeCCCCeEEEecCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEecCCEEEEEeCCCeEEEEE
Q 013184 138 LVWSTSKHDVYLMSHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAVRDNLLIAGGFQGELICKY 217 (448)
Q Consensus 138 l~~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~~~~~lvsg~~dg~i~vw~ 217 (448)
++.+.+..-.+.+.+.++.+|+..+.. .......- ...|... ..+.++++.++++++|..||.|.+|.
T Consensus 166 I~~~~~ge~~~i~~~~~~~~~~v~~~~-~~~~~~~~----~~~Htf~-------~t~~~~spn~~~~Aa~d~dGrI~vw~ 233 (792)
T KOG1963|consen 166 IVDNNSGEFKGIVHMCKIHIYFVPKHT-KHTSSRDI----TVHHTFN-------ITCVALSPNERYLAAGDSDGRILVWR 233 (792)
T ss_pred EEEcCCceEEEEEEeeeEEEEEecccc-eeeccchh----hhhhccc-------ceeEEeccccceEEEeccCCcEEEEe
Confidence 445566666666778889999976644 22211110 0011110 13445555999999999999999998
Q ss_pred cCC-CCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee-cCCCeeEEEECCCCCEEEE
Q 013184 218 LDQ-PGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS-FPWPVNHTSLSPDGKLLVI 295 (448)
Q Consensus 218 ~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~ 295 (448)
--. ........+..=|...++++.+ +++|. +|.+|+..|.+.+|.+++++ .+.++ ..++|..+.+|||+.+.++
T Consensus 234 d~~~~~~~~t~t~lHWH~~~V~~L~f--S~~G~-~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl 309 (792)
T KOG1963|consen 234 DFGSSDDSETCTLLHWHHDEVNSLSF--SSDGA-YLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSL 309 (792)
T ss_pred ccccccccccceEEEecccccceeEE--ecCCc-eEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEE
Confidence 554 2323323333334455667766 88887 89999999999999999988 44444 7899999999999999999
Q ss_pred EecCCcEEEEECCCCceeEeeec-----------CCCcEEEEEEcCCCCEEEEEeCCCcE--------------------
Q 013184 296 VGDNPEGILVDSQTGKAIMPLCG-----------HLDFSFASAWHPDGRIFATGNQDKTC-------------------- 344 (448)
Q Consensus 296 ~~~d~~i~i~d~~~~~~~~~l~~-----------h~~~v~~~~~~p~g~~l~s~~~d~~i-------------------- 344 (448)
...|+.|.+..+.+.....++.| ..+-.+.++++|..+.++-.+..|.|
T Consensus 310 ~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n 389 (792)
T KOG1963|consen 310 VLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDEN 389 (792)
T ss_pred EecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeec
Confidence 99999999987643322211111 01222333444433333333344444
Q ss_pred -------------------------------------------EEEEccCCCc---c-eEEEccCCCCeEEEEEcC-CCC
Q 013184 345 -------------------------------------------RVWDVRNLSK---S-VAVLKGNLGAIRSIRFTS-DGN 376 (448)
Q Consensus 345 -------------------------------------------~iwd~~~~~~---~-~~~~~~~~~~v~~l~~sp-~g~ 376 (448)
++|-.....+ . .....+|...+...++.+ ...
T Consensus 390 ~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs 469 (792)
T KOG1963|consen 390 YSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRS 469 (792)
T ss_pred ccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCccc
Confidence 4444321111 0 112234555444444443 223
Q ss_pred -EEEEEeCCCeEEEEECCCCc----------eeeeeecCcCceEEEEEccCCCeEEEEE
Q 013184 377 -FMAMAEPADFVHVYDAKNGF----------EKEQEIDFFGEISGMTFSPDTEALFIGV 424 (448)
Q Consensus 377 -~l~s~~~d~~v~vwd~~~~~----------~~~~~~~~~~~v~~~~fspdg~~L~~~~ 424 (448)
.+++++.||.++||-+.... +...-.-|..+++.++|+.||..|+++.
T Consensus 470 ~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~ 528 (792)
T KOG1963|consen 470 VRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVSF 528 (792)
T ss_pred ceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEec
Confidence 78899999999999884322 1222223678999999999998887764
No 225
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.52 E-value=6.7e-14 Score=129.99 Aligned_cols=281 Identities=15% Similarity=0.190 Sum_probs=191.0
Q ss_pred ccCcceeeecccC----CCCCccccccc-------ceeeeCCCCeEEEe-cCCeEEEEecCCCceeEEEecCCCCCCCCC
Q 013184 113 GGKYYEFWRNTRS----VKSTILHFQLR-------NLVWSTSKHDVYLM-SHFSIVHWSSLSSKRTEVLDVSGHVAPCEK 180 (448)
Q Consensus 113 ~~~~~~f~~~~~~----~~~~~~hfq~r-------~l~~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~ 180 (448)
.+.-|.|+..... +.+...||.|. .+-.+.++..+++. ..+.|-.+|+.+.....-+++.
T Consensus 99 ~EkT~~v~Q~~Ia~~Vdi~sa~k~f~L~l~eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~-------- 170 (545)
T KOG1272|consen 99 LEKTYKVRQDDIAENVDIASATKHFDLSLPEFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVM-------- 170 (545)
T ss_pred CcceeeeEHhhhhhhccHHhHHhhccccccccCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehh--------
Confidence 3444666644332 33333455432 23344444455554 4566888888887766665554
Q ss_pred CCCCcccCCcceeeEEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCC
Q 013184 181 HPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNND 258 (448)
Q Consensus 181 ~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d 258 (448)
..|..+.+ +..++|++- ..-+.|||-.... ..|.+. ...+..+.| -|.. .+|++++..
T Consensus 171 -----------Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~GtE-lHClk~----~~~v~rLeF--LPyH-fLL~~~~~~ 230 (545)
T KOG1272|consen 171 -----------ETVRDVTFLHNEQFFAVAQ-KKYVYVYDNNGTE-LHCLKR----HIRVARLEF--LPYH-FLLVAASEA 230 (545)
T ss_pred -----------hhhhhhhhhcchHHHHhhh-hceEEEecCCCcE-Eeehhh----cCchhhhcc--cchh-heeeecccC
Confidence 23555666 445555443 4456666643322 222221 122445555 4554 478899999
Q ss_pred CcEEEEecCCceEEEEee-cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEE
Q 013184 259 CGVRDFDMERFQLSKHFS-FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFAT 337 (448)
Q Consensus 259 g~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s 337 (448)
|.++--|+.+|+++..+. ..+.+..++-+|-...+-+|...|+|.+|.....+++..+..|.++|.++++.|+|+|+||
T Consensus 231 G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaT 310 (545)
T KOG1272|consen 231 GFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMAT 310 (545)
T ss_pred CceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEee
Confidence 999999999999998888 6788899999998889999999999999999999998888899999999999999999999
Q ss_pred EeCCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE-CCC----CceeeeeecCcCceEEEE
Q 013184 338 GNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYD-AKN----GFEKEQEIDFFGEISGMT 412 (448)
Q Consensus 338 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd-~~~----~~~~~~~~~~~~~v~~~~ 412 (448)
.+.|..|+|||+|+..++..... .-+...+++|..| |++++....|.||- .-. +...+......+.|.++.
T Consensus 311 tG~Dr~~kIWDlR~~~ql~t~~t--p~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~ 386 (545)
T KOG1272|consen 311 TGLDRKVKIWDLRNFYQLHTYRT--PHPASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLR 386 (545)
T ss_pred cccccceeEeeeccccccceeec--CCCcccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccce
Confidence 99999999999998554333333 3356778888655 34445566799994 222 112222222346899999
Q ss_pred EccCCCeEEEEEe
Q 013184 413 FSPDTEALFIGVW 425 (448)
Q Consensus 413 fspdg~~L~~~~~ 425 (448)
|.|-...|-+|-.
T Consensus 387 FcP~EDvLGIGH~ 399 (545)
T KOG1272|consen 387 FCPYEDVLGIGHA 399 (545)
T ss_pred eccHHHeeecccc
Confidence 9998777766643
No 226
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=1.6e-11 Score=121.44 Aligned_cols=194 Identities=16% Similarity=0.094 Sum_probs=128.1
Q ss_pred EEeCCCCCee--EEEEeCCC--cEEEEecCCceEEEEeecCCCeeEEEECCCCCEEEEEec-CC----cEEEEECCCC--
Q 013184 242 IYNSPSGGIH--FMASNNDC--GVRDFDMERFQLSKHFSFPWPVNHTSLSPDGKLLVIVGD-NP----EGILVDSQTG-- 310 (448)
Q Consensus 242 ~~~~~~~~~~--l~s~s~dg--~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~----~i~i~d~~~~-- 310 (448)
-.|+|+|..+ ++++..+| .|.+.++.+++..+....++.....+|||||+.|+..+. .| .+.+|++..+
T Consensus 190 P~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~ 269 (428)
T PRK01029 190 PTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAI 269 (428)
T ss_pred ceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCC
Confidence 3459998753 23444443 577779988876666656666778899999999887663 22 3344676653
Q ss_pred -ceeEeeecCCCcEEEEEEcCCCCEEEEEe-CCCcEEEEEcc--CCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCC--
Q 013184 311 -KAIMPLCGHLDFSFASAWHPDGRIFATGN-QDKTCRVWDVR--NLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPA-- 384 (448)
Q Consensus 311 -~~~~~l~~h~~~v~~~~~~p~g~~l~s~~-~d~~i~iwd~~--~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d-- 384 (448)
+......++.......+|+|||+.|+..+ .+|..+||.+. ..+.....+..+...+....|||||++|+..+..
T Consensus 270 g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g 349 (428)
T PRK01029 270 GKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKG 349 (428)
T ss_pred CcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCC
Confidence 33333333333445789999999877665 46666666543 2123345565555667789999999999877643
Q ss_pred -CeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEecCCcceEEEEe
Q 013184 385 -DFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDRTYGSLLQYN 436 (448)
Q Consensus 385 -~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~~~~ll~~~ 436 (448)
..|++||+.+++.. .+......+.++.|+|||+.|+....++.-..+..+.
T Consensus 350 ~~~I~v~dl~~g~~~-~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vd 401 (428)
T PRK01029 350 VRQICVYDLATGRDY-QLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLIS 401 (428)
T ss_pred CcEEEEEECCCCCeE-EccCCCCCccceEECCCCCEEEEEECCCCCceEEEEE
Confidence 37999999887654 3333344678899999999998766554444555444
No 227
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.49 E-value=3.3e-11 Score=119.65 Aligned_cols=206 Identities=20% Similarity=0.258 Sum_probs=137.1
Q ss_pred EecCCEEEEEeCC---CeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCC--cEEEEecCCceEE
Q 013184 198 AVRDNLLIAGGFQ---GELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDC--GVRDFDMERFQLS 272 (448)
Q Consensus 198 ~~~~~~lvsg~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg--~v~iwd~~~~~~~ 272 (448)
+.+++.|+.+... ..|.+|++.+..... +. .......+.. ++|+|..++++.+.++ .|++|++.+++..
T Consensus 198 Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~---~~-~~~~~~~~~~--~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~ 271 (417)
T TIGR02800 198 SPDGQKLAYVSFESGKPEIYVQDLATGQREK---VA-SFPGMNGAPA--FSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT 271 (417)
T ss_pred CCCCCEEEEEEcCCCCcEEEEEECCCCCEEE---ee-cCCCCccceE--ECCCCCEEEEEECCCCCccEEEEECCCCCEE
Confidence 3388888877654 479999987765322 11 1223333444 4899986666666554 5888999887765
Q ss_pred EEeecCCCeeEEEECCCCCEEEEEecC---CcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCC---cEEE
Q 013184 273 KHFSFPWPVNHTSLSPDGKLLVIVGDN---PEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDK---TCRV 346 (448)
Q Consensus 273 ~~~~~~~~v~~~~~sp~~~~l~~~~~d---~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~---~i~i 346 (448)
....+........|+|+|+.|+.++.. ..|.++++.+++. ..+..+......+.|+|+|++|+.++.++ .|.+
T Consensus 272 ~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~ 350 (417)
T TIGR02800 272 RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAV 350 (417)
T ss_pred ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCEEEEEEccCCceEEEE
Confidence 555555556678999999998877643 2688888887764 34544556677889999999999888775 7888
Q ss_pred EEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCC---eEEEEECCCCceeeeeecCcCceEEEEEc
Q 013184 347 WDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPAD---FVHVYDAKNGFEKEQEIDFFGEISGMTFS 414 (448)
Q Consensus 347 wd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~---~v~vwd~~~~~~~~~~~~~~~~v~~~~fs 414 (448)
||+.+ + ....+... .......|+|+|++|+.++.++ .+++.+. ++.....+....+.+..++|+
T Consensus 351 ~d~~~-~-~~~~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~-~g~~~~~~~~~~g~~~~~~ws 417 (417)
T TIGR02800 351 MDLDG-G-GERVLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVST-DGRFRARLPLGNGDVREPAWS 417 (417)
T ss_pred EeCCC-C-CeEEccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEEC-CCceeeECCCCCCCcCCCCCC
Confidence 88865 2 33333322 2345568999999998887654 4666664 344444444445566666553
No 228
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=4.2e-13 Score=127.08 Aligned_cols=160 Identities=16% Similarity=0.239 Sum_probs=131.3
Q ss_pred ecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee--cCCCeeEEEECC--CCCEEEEEecCCcEEEE
Q 013184 230 TYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS--FPWPVNHTSLSP--DGKLLVIVGDNPEGILV 305 (448)
Q Consensus 230 ~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~~v~~~~~sp--~~~~l~~~~~d~~i~i~ 305 (448)
..+|.+.++++.| +.+|. +|++||.|-.+.|||.-..+++..+. |...|.++.|-| +.+++++|..|..|+++
T Consensus 46 L~GH~GCVN~LeW--n~dG~-lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 46 LTGHTGCVNCLEW--NADGE-LLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hccccceecceee--cCCCC-EEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 3467888999988 77776 99999999999999999888888776 899999999999 66788999999999999
Q ss_pred ECCCC----------ceeEeeecCCCcEEEEEEcCCC-CEEEEEeCCCcEEEEEccCCCcceEEEcc---------CCCC
Q 013184 306 DSQTG----------KAIMPLCGHLDFSFASAWHPDG-RIFATGNQDKTCRVWDVRNLSKSVAVLKG---------NLGA 365 (448)
Q Consensus 306 d~~~~----------~~~~~l~~h~~~v~~~~~~p~g-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~---------~~~~ 365 (448)
|+... ...+.+..|...|..++-.|++ +.+.+++.||+|+-+|+|.+..+-..... ..-.
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lie 202 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIE 202 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhe
Confidence 99742 2344456799999999999988 79999999999999999974433322211 1235
Q ss_pred eEEEEEcCCC-CEEEEEeCCCeEEEEEC
Q 013184 366 IRSIRFTSDG-NFMAMAEPADFVHVYDA 392 (448)
Q Consensus 366 v~~l~~sp~g-~~l~s~~~d~~v~vwd~ 392 (448)
..|+..+|.. .+||+|+.+-..++||.
T Consensus 203 lk~ltisp~rp~~laVGgsdpfarLYD~ 230 (758)
T KOG1310|consen 203 LKCLTISPSRPYYLAVGGSDPFARLYDR 230 (758)
T ss_pred eeeeeecCCCCceEEecCCCchhhhhhh
Confidence 6789999965 68999999999999994
No 229
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=5e-11 Score=118.73 Aligned_cols=213 Identities=18% Similarity=0.131 Sum_probs=132.8
Q ss_pred eEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCC--cEEEEecCCceEEEEeecCCCeeEEEECCC
Q 013184 212 ELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDC--GVRDFDMERFQLSKHFSFPWPVNHTSLSPD 289 (448)
Q Consensus 212 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg--~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~ 289 (448)
.|.+++.+..... .+. .....+....| +|+|..++++...++ .|++||+.+++........+.....+|+|+
T Consensus 199 ~l~i~d~dG~~~~---~l~-~~~~~~~~p~w--SPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPD 272 (448)
T PRK04792 199 QLMIADYDGYNEQ---MLL-RSPEPLMSPAW--SPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPD 272 (448)
T ss_pred EEEEEeCCCCCce---Eee-cCCCcccCceE--CCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCC
Confidence 5555565544322 122 22333334444 999986555554444 588889988876544444555568899999
Q ss_pred CCEEEEE-ecCC--cEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeC-CCc--EEEEEccCCCcceEEEccCC
Q 013184 290 GKLLVIV-GDNP--EGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQ-DKT--CRVWDVRNLSKSVAVLKGNL 363 (448)
Q Consensus 290 ~~~l~~~-~~d~--~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~-d~~--i~iwd~~~~~~~~~~~~~~~ 363 (448)
|+.|+.. ..++ .|.++|+.+++.. .+..+.......+|+|||+.|+..+. ++. |.++|+.. + ....+....
T Consensus 273 G~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~-g-~~~~Lt~~g 349 (448)
T PRK04792 273 GKKLALVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLAS-G-KVSRLTFEG 349 (448)
T ss_pred CCEEEEEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC-C-CEEEEecCC
Confidence 9988764 4455 4888898877643 45555556677899999998776553 444 55556643 3 333343222
Q ss_pred CCeEEEEEcCCCCEEEEEeCC-C--eEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEecCCcceEEEE
Q 013184 364 GAIRSIRFTSDGNFMAMAEPA-D--FVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDRTYGSLLQY 435 (448)
Q Consensus 364 ~~v~~l~~sp~g~~l~s~~~d-~--~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~~~~ll~~ 435 (448)
......+|+|+|++|+..+.. + .|.++|+.++... .+... ......+|+|||+.|+....++....+..+
T Consensus 350 ~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~ 422 (448)
T PRK04792 350 EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAV 422 (448)
T ss_pred CCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCEEEEEEecCCceEEEEE
Confidence 334457999999999887653 3 5667888877543 22222 223356899999999988776654444443
No 230
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.48 E-value=8.6e-13 Score=124.98 Aligned_cols=206 Identities=16% Similarity=0.170 Sum_probs=149.0
Q ss_pred eeEEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCc-
Q 013184 193 QVSTLAV--RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERF- 269 (448)
Q Consensus 193 ~i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~- 269 (448)
.|.||++ +|.+|++|+.|-.+.|||.-..+.. ..+..+|.+-+-++.|+...++ .++++|..|..|+++|+...
T Consensus 52 CVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kll--hsI~TgHtaNIFsvKFvP~tnn-riv~sgAgDk~i~lfdl~~~~ 128 (758)
T KOG1310|consen 52 CVNCLEWNADGELLASGSDDTRLIVWDPFEYKLL--HSISTGHTANIFSVKFVPYTNN-RIVLSGAGDKLIKLFDLDSSK 128 (758)
T ss_pred eecceeecCCCCEEeecCCcceEEeecchhccee--eeeecccccceeEEeeeccCCC-eEEEeccCcceEEEEeccccc
Confidence 5899999 9999999999999999998754433 4455566666777777655444 58999999999999999741
Q ss_pred ---------eEEEEee-cCCCeeEEEECCCC-CEEEEEecCCcEEEEECCCCcee-------E---eeecCCCcEEEEEE
Q 013184 270 ---------QLSKHFS-FPWPVNHTSLSPDG-KLLVIVGDNPEGILVDSQTGKAI-------M---PLCGHLDFSFASAW 328 (448)
Q Consensus 270 ---------~~~~~~~-~~~~v~~~~~sp~~-~~l~~~~~d~~i~i~d~~~~~~~-------~---~l~~h~~~v~~~~~ 328 (448)
.....+. |...|..++..|++ ..+.+++.||+|+-+|++....- . .+....-...+++.
T Consensus 129 ~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~lti 208 (758)
T KOG1310|consen 129 EGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTI 208 (758)
T ss_pred ccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeee
Confidence 1222233 77888999999977 78899999999999999863211 1 11112234578999
Q ss_pred cC-CCCEEEEEeCCCcEEEEEccCCC-----------------cceEEEc-cCC----C-------CeEEEEEcCCCCEE
Q 013184 329 HP-DGRIFATGNQDKTCRVWDVRNLS-----------------KSVAVLK-GNL----G-------AIRSIRFTSDGNFM 378 (448)
Q Consensus 329 ~p-~g~~l~s~~~d~~i~iwd~~~~~-----------------~~~~~~~-~~~----~-------~v~~l~~sp~g~~l 378 (448)
+| +..+||+|+.|-..++||.|... .++..+. +|. + .++-+.|+|+|.-|
T Consensus 209 sp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtEl 288 (758)
T KOG1310|consen 209 SPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTEL 288 (758)
T ss_pred cCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEE
Confidence 99 55699999999999999954211 1233221 222 1 25668899999877
Q ss_pred EEEeCCCeEEEEECCCCceeeee
Q 013184 379 AMAEPADFVHVYDAKNGFEKEQE 401 (448)
Q Consensus 379 ~s~~~d~~v~vwd~~~~~~~~~~ 401 (448)
++.-....|+++|+..++...+.
T Consensus 289 Lvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 289 LVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred EEeeCCeEEEEEeecCCCCceee
Confidence 77666678999999887765443
No 231
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.48 E-value=1.5e-09 Score=104.72 Aligned_cols=238 Identities=16% Similarity=0.201 Sum_probs=151.1
Q ss_pred EEEEecCCEEEEEeC----CCeEEEEEcCCC-C-ceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCC
Q 013184 195 STLAVRDNLLIAGGF----QGELICKYLDQP-G-VSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMER 268 (448)
Q Consensus 195 ~~l~~~~~~lvsg~~----dg~i~vw~~~~~-~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~ 268 (448)
.+++.++++|.+... .|.|..|.+... + ........ ........+.+ +|++..++++...+|.|.++++..
T Consensus 42 l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~-~~g~~p~~i~~--~~~g~~l~vany~~g~v~v~~l~~ 118 (345)
T PF10282_consen 42 LAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVP-SGGSSPCHIAV--DPDGRFLYVANYGGGSVSVFPLDD 118 (345)
T ss_dssp EEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEE-ESSSCEEEEEE--CTTSSEEEEEETTTTEEEEEEECT
T ss_pred EEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeec-cCCCCcEEEEE--ecCCCEEEEEEccCCeEEEEEccC
Confidence 344448888888876 579999999876 3 22222222 12333345555 899886666666799999999976
Q ss_pred -ceEEEE---eec-----------CCCeeEEEECCCCCEEEEEe-cCCcEEEEECCCCc--ee--Eeee-cCCCcEEEEE
Q 013184 269 -FQLSKH---FSF-----------PWPVNHTSLSPDGKLLVIVG-DNPEGILVDSQTGK--AI--MPLC-GHLDFSFASA 327 (448)
Q Consensus 269 -~~~~~~---~~~-----------~~~v~~~~~sp~~~~l~~~~-~d~~i~i~d~~~~~--~~--~~l~-~h~~~v~~~~ 327 (448)
+.+... +.+ .....++.++|+++++++.. ....|.+|++.... .. ..+. ........++
T Consensus 119 ~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~ 198 (345)
T PF10282_consen 119 DGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLA 198 (345)
T ss_dssp TSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEE
T ss_pred CcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEE
Confidence 443332 211 23467899999999988874 33478898886654 32 2222 2345678999
Q ss_pred EcCCCCEEEEEeC-CCcEEEEEccCCCcc---eEEEcc----C--CCCeEEEEEcCCCCEEEEEeC-CCeEEEEECC--C
Q 013184 328 WHPDGRIFATGNQ-DKTCRVWDVRNLSKS---VAVLKG----N--LGAIRSIRFTSDGNFMAMAEP-ADFVHVYDAK--N 394 (448)
Q Consensus 328 ~~p~g~~l~s~~~-d~~i~iwd~~~~~~~---~~~~~~----~--~~~v~~l~~sp~g~~l~s~~~-d~~v~vwd~~--~ 394 (448)
|+|+|+++++.++ +++|.++++...... +..+.. . ......++++|+|++|.++.. .+.|.+|++. +
T Consensus 199 f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~ 278 (345)
T PF10282_consen 199 FSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPAT 278 (345)
T ss_dssp E-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTT
T ss_pred EcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCC
Confidence 9999998766654 678999999721222 222221 1 125778999999999988764 5689999983 3
Q ss_pred Ccee--eeeecCcCceEEEEEccCCCeEEEEEecCCcceEEEE
Q 013184 395 GFEK--EQEIDFFGEISGMTFSPDTEALFIGVWDRTYGSLLQY 435 (448)
Q Consensus 395 ~~~~--~~~~~~~~~v~~~~fspdg~~L~~~~~D~~~~~ll~~ 435 (448)
+... ..+.........++++|+|++|+++..+...-.++..
T Consensus 279 g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~ 321 (345)
T PF10282_consen 279 GTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDI 321 (345)
T ss_dssp TTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred CceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEE
Confidence 3332 2222223458999999999999999876644444444
No 232
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=5.4e-11 Score=118.51 Aligned_cols=191 Identities=17% Similarity=0.152 Sum_probs=127.6
Q ss_pred EEEeCCCCCeeEEEEeCC--CcEEEEecCCceEEEEeecCCCeeEEEECCCCCEEEEE-ecCC--cEEEEECCCCceeEe
Q 013184 241 EIYNSPSGGIHFMASNND--CGVRDFDMERFQLSKHFSFPWPVNHTSLSPDGKLLVIV-GDNP--EGILVDSQTGKAIMP 315 (448)
Q Consensus 241 ~~~~~~~~~~~l~s~s~d--g~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~~d~--~i~i~d~~~~~~~~~ 315 (448)
...++|+|+.+++++..+ ..|.+|++.+++........+.+...+|+|+|+.|+.. ..++ .|.++|+.+++.. .
T Consensus 203 ~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~ 281 (430)
T PRK00178 203 SPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-R 281 (430)
T ss_pred eeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-E
Confidence 334599998555554443 36889999988766555555666789999999988754 3344 6888899887654 4
Q ss_pred eecCCCcEEEEEEcCCCCEEEEEeC-CC--cEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCC---eEEE
Q 013184 316 LCGHLDFSFASAWHPDGRIFATGNQ-DK--TCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPAD---FVHV 389 (448)
Q Consensus 316 l~~h~~~v~~~~~~p~g~~l~s~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~---~v~v 389 (448)
+..+........|+|+|+.|+..+. ++ .|.++++.. ++ ...+...........|+|+|++|+.....+ .|.+
T Consensus 282 lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~-g~-~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~ 359 (430)
T PRK00178 282 VTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNG-GR-AERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAA 359 (430)
T ss_pred cccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCC-CC-EEEeecCCCCccceEECCCCCEEEEEEccCCceEEEE
Confidence 5555555667899999998776553 34 466667654 33 333332223344578999999998876543 5889
Q ss_pred EECCCCceeeeeecCcCceEEEEEccCCCeEEEEEecCCcceEEEEe
Q 013184 390 YDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDRTYGSLLQYN 436 (448)
Q Consensus 390 wd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~~~~ll~~~ 436 (448)
||+.++... .+.. ........|+|||+.|+.++.++....+....
T Consensus 360 ~dl~tg~~~-~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~ 404 (430)
T PRK00178 360 QDLQRGSVR-ILTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVS 404 (430)
T ss_pred EECCCCCEE-EccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEE
Confidence 999887643 2222 22334678999999999888776545454443
No 233
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.46 E-value=5.5e-12 Score=120.28 Aligned_cols=178 Identities=14% Similarity=0.165 Sum_probs=141.3
Q ss_pred EEEEeCCCcEEEEecCCceEEEEee-cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeec------CCC---
Q 013184 252 FMASNNDCGVRDFDMERFQLSKHFS-FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCG------HLD--- 321 (448)
Q Consensus 252 l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~------h~~--- 321 (448)
|..++....|+-++++.|+.+..+. ..+.++++..++...+|++|+.+|.|..||.++...+..+.. |..
T Consensus 148 ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~ 227 (703)
T KOG2321|consen 148 LYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDA 227 (703)
T ss_pred EEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccc
Confidence 3334444578889999999999998 558999999999999999999999999999998877665542 333
Q ss_pred --cEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCC--CCEEEEEeCCCeEEEEECCCCce
Q 013184 322 --FSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSD--GNFMAMAEPADFVHVYDAKNGFE 397 (448)
Q Consensus 322 --~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~--g~~l~s~~~d~~v~vwd~~~~~~ 397 (448)
.|+++.|+.+|-.+++|...|.|.|||+|.....+..-.+..-+|..+.|.+. +..|++. ....++|||-.+|+.
T Consensus 228 ~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~ 306 (703)
T KOG2321|consen 228 APSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKP 306 (703)
T ss_pred cCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCc
Confidence 38999999999999999999999999999844444444555678999999775 3455554 445899999999987
Q ss_pred eeeeecCcCceEEEEEccCCCeEEEEEecCCcce
Q 013184 398 KEQEIDFFGEISGMTFSPDTEALFIGVWDRTYGS 431 (448)
Q Consensus 398 ~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~~~~ 431 (448)
...+.. ...+..+|+-|++-.++++..+..+..
T Consensus 307 ~asiEp-t~~lND~C~~p~sGm~f~Ane~~~m~~ 339 (703)
T KOG2321|consen 307 MASIEP-TSDLNDFCFVPGSGMFFTANESSKMHT 339 (703)
T ss_pred eeeccc-cCCcCceeeecCCceEEEecCCCccee
Confidence 765544 445999999999999999987765443
No 234
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.45 E-value=8.6e-14 Score=137.44 Aligned_cols=225 Identities=17% Similarity=0.243 Sum_probs=159.9
Q ss_pred CCCCeEEEecCCe-EEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCCCeEEEEEc
Q 013184 142 TSKHDVYLMSHFS-IVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQGELICKYL 218 (448)
Q Consensus 142 ~~~~~v~~~~~~~-v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~dg~i~vw~~ 218 (448)
-+++.|+..++.. |++|++.+ ..++.++.||.. .|+.+++ +.-++++++.|..|++|.+
T Consensus 200 rtg~~Iitgsdd~lvKiwS~et--~~~lAs~rGhs~----------------ditdlavs~~n~~iaaaS~D~vIrvWrl 261 (1113)
T KOG0644|consen 200 RTGRYIITGSDDRLVKIWSMET--ARCLASCRGHSG----------------DITDLAVSSNNTMIAAASNDKVIRVWRL 261 (1113)
T ss_pred cccceEeecCccceeeeeeccc--hhhhccCCCCcc----------------ccchhccchhhhhhhhcccCceEEEEec
Confidence 5567788877665 99999654 556667888876 4888888 5567889999999999999
Q ss_pred CCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCC--------------ceEEEEe--e------
Q 013184 219 DQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMER--------------FQLSKHF--S------ 276 (448)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~--------------~~~~~~~--~------ 276 (448)
...... .+..+|.+.+.++++ +|- .+.+.||++++||.+- +..+..+ .
T Consensus 262 ~~~~pv---svLrghtgavtaiaf--sP~-----~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f 331 (1113)
T KOG0644|consen 262 PDGAPV---SVLRGHTGAVTAIAF--SPR-----ASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRF 331 (1113)
T ss_pred CCCchH---HHHhccccceeeecc--Ccc-----ccCCCCCceEeccccccccccCCCCCCcccccceeeeecccccccc
Confidence 877643 334456666677776 553 3678899999999761 0000000 0
Q ss_pred ---------cCCCeeEEEECCCCCEEEEEe-----------cCCcEEEEECCCCceeEeeecCCCcEEEEEEcC-CCCEE
Q 013184 277 ---------FPWPVNHTSLSPDGKLLVIVG-----------DNPEGILVDSQTGKAIMPLCGHLDFSFASAWHP-DGRIF 335 (448)
Q Consensus 277 ---------~~~~v~~~~~sp~~~~l~~~~-----------~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p-~g~~l 335 (448)
....+.+++|...+-.+++.+ .+-.+.+|++.+|+..+.+.+|.++++.+.+|| +.+..
T Consensus 332 ~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~ 411 (1113)
T KOG0644|consen 332 LTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIA 411 (1113)
T ss_pred ccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhh
Confidence 011122333333333333332 344577899999999999999999999999999 66777
Q ss_pred EEEeCCCcEEEEEccCCCcceE-EEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 013184 336 ATGNQDKTCRVWDVRNLSKSVA-VLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGF 396 (448)
Q Consensus 336 ~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~ 396 (448)
.+++.||...|||+.. +.+++ ...+ .+.+..-+||++|..++....-|.++|.....+.
T Consensus 412 msag~dgst~iwdi~e-g~pik~y~~g-h~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 412 MSAGYDGSTIIWDIWE-GIPIKHYFIG-HGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred hhccCCCceEeeeccc-CCcceeeecc-cceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence 8899999999999987 54444 4445 4567778999999999998888899998765443
No 235
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.45 E-value=1.8e-11 Score=117.43 Aligned_cols=175 Identities=15% Similarity=0.119 Sum_probs=147.8
Q ss_pred CCCCeeEEEEeCCCcEEEEecCCceEEEEee----cCCCeeEEEEC------C--------------CCCEEEEEecCCc
Q 013184 246 PSGGIHFMASNNDCGVRDFDMERFQLSKHFS----FPWPVNHTSLS------P--------------DGKLLVIVGDNPE 301 (448)
Q Consensus 246 ~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~----~~~~v~~~~~s------p--------------~~~~l~~~~~d~~ 301 (448)
|.+..+++....||.+|+|+...++....|. ..+...+..|. | +-..++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 3444588999999999999999998887776 23444455542 2 2346777888999
Q ss_pred EEEEECCCCceeEeee--cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEE
Q 013184 302 GILVDSQTGKAIMPLC--GHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMA 379 (448)
Q Consensus 302 i~i~d~~~~~~~~~l~--~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~ 379 (448)
|.+|+...|+....+. .|.+.|.++.|+.+-..|.+++.|+.+..|+... ...+..+......+.+++.+|||..|+
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~-~~~~~~~~~~~~~~~sl~is~D~~~l~ 160 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKE-KVIIRIWKEQKPLVSSLCISPDGKILL 160 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccc-ceeeeeeccCCCccceEEEcCCCCEEE
Confidence 9999999999888776 5889999999999999999999999999999976 788888888888899999999999999
Q ss_pred EEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccC-----CCeEEEE
Q 013184 380 MAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPD-----TEALFIG 423 (448)
Q Consensus 380 s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspd-----g~~L~~~ 423 (448)
+|+ +.|++||+.+++.+..+.+|.++|.+++|.-+ |++++++
T Consensus 161 ~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLss 207 (541)
T KOG4547|consen 161 TAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSS 207 (541)
T ss_pred ecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeec
Confidence 986 47999999999999999999999999999887 7777655
No 236
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=8.9e-11 Score=116.96 Aligned_cols=209 Identities=19% Similarity=0.177 Sum_probs=133.5
Q ss_pred EEecCCEEEEEeCC-C--eEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCc--EEEEecCCceE
Q 013184 197 LAVRDNLLIAGGFQ-G--ELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCG--VRDFDMERFQL 271 (448)
Q Consensus 197 l~~~~~~lvsg~~d-g--~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~--v~iwd~~~~~~ 271 (448)
++.+|+.|+..+.+ | .|.+|++.+..... +. ...+..... .++|+|..++++.+.++. |+++|+.+++.
T Consensus 225 wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~---lt-~~~g~~~~~--~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~ 298 (448)
T PRK04792 225 WSPDGRKLAYVSFENRKAEIFVQDIYTQVREK---VT-SFPGINGAP--RFSPDGKKLALVLSKDGQPEIYVVDIATKAL 298 (448)
T ss_pred ECCCCCEEEEEEecCCCcEEEEEECCCCCeEE---ec-CCCCCcCCe--eECCCCCEEEEEEeCCCCeEEEEEECCCCCe
Confidence 34488887776543 3 57778877654321 21 112222233 449999877677777775 77779988876
Q ss_pred EEEeecCCCeeEEEECCCCCEEEEEec-C--CcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeC-CCc--EE
Q 013184 272 SKHFSFPWPVNHTSLSPDGKLLVIVGD-N--PEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQ-DKT--CR 345 (448)
Q Consensus 272 ~~~~~~~~~v~~~~~sp~~~~l~~~~~-d--~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~-d~~--i~ 345 (448)
.....+.......+|+|+|+.|+..+. + ..|.++|+.+++... +..........+|+|+|++|+..+. ++. |.
T Consensus 299 ~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~ 377 (448)
T PRK04792 299 TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIA 377 (448)
T ss_pred EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCcCeeECCCCCEEEEEEecCCceEEE
Confidence 655555556678899999998887664 2 357777888776543 3222233345789999998877655 343 44
Q ss_pred EEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCC---eEEEEECCCCceeeeeecCcCceEEEEEccC
Q 013184 346 VWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPAD---FVHVYDAKNGFEKEQEIDFFGEISGMTFSPD 416 (448)
Q Consensus 346 iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~---~v~vwd~~~~~~~~~~~~~~~~v~~~~fspd 416 (448)
++|+.. + ....+... .......|+|+|++|+.....+ .+++++. +|.....+..+.+.+...+|+|-
T Consensus 378 ~~dl~~-g-~~~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 378 RQDLET-G-AMQVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred EEECCC-C-CeEEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcCCCccCCC
Confidence 456654 2 33334332 1223458999999888766543 4778886 55666666656677888899873
No 237
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.44 E-value=3.5e-11 Score=115.57 Aligned_cols=191 Identities=13% Similarity=0.106 Sum_probs=153.4
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeC----C-------------CCCeeEEEEeCCCcEEE
Q 013184 201 DNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNS----P-------------SGGIHFMASNNDCGVRD 263 (448)
Q Consensus 201 ~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----~-------------~~~~~l~s~s~dg~v~i 263 (448)
..++|....||.+++|+...+..........+..+...++.|.-. | .+...++-|...|.|.+
T Consensus 5 ~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ 84 (541)
T KOG4547|consen 5 LDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLL 84 (541)
T ss_pred hheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEE
Confidence 467899999999999999887754333333333333333333211 1 33447888999999999
Q ss_pred EecCCceEEEEee---cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeC
Q 013184 264 FDMERFQLSKHFS---FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQ 340 (448)
Q Consensus 264 wd~~~~~~~~~~~---~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~ 340 (448)
+++..+++...+. |.++|+++.++.+-..|.+++.|..+..|+...++.++.+.+....+.+++.+|||..+++++
T Consensus 85 ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as- 163 (541)
T KOG4547|consen 85 YSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS- 163 (541)
T ss_pred EEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc-
Confidence 9999999988887 899999999999999999999999999999999999999998888999999999999999987
Q ss_pred CCcEEEEEccCCCcceEEEccCCCCeEEEEEcCC-----CCEEEEE-eCCCeEEEEECCC
Q 013184 341 DKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSD-----GNFMAMA-EPADFVHVYDAKN 394 (448)
Q Consensus 341 d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~-----g~~l~s~-~~d~~v~vwd~~~ 394 (448)
++|++||+.+ ++.+..+++|.++|+++.|.-+ |.+++++ .....+.+|-+..
T Consensus 164 -~~ik~~~~~~-kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 164 -RQIKVLDIET-KEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred -ceEEEEEccC-ceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 5799999987 8999999999999999999877 6666554 4444566775543
No 238
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.43 E-value=5.1e-11 Score=122.77 Aligned_cols=233 Identities=17% Similarity=0.159 Sum_probs=155.9
Q ss_pred eEEEEe---cCCEEEEEeCCCeEEEEEcCCCC---ceeEEEeecC-CCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEec
Q 013184 194 VSTLAV---RDNLLIAGGFQGELICKYLDQPG---VSFCSRTTYD-ENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDM 266 (448)
Q Consensus 194 i~~l~~---~~~~lvsg~~dg~i~vw~~~~~~---~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~ 266 (448)
|..++. .+.++++||.||+|++|++..-. .......+.+ .+..+.++.. .+.+. .+++++.||.|++.++
T Consensus 1051 v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~--~~~~~-~~Av~t~DG~v~~~~i 1127 (1431)
T KOG1240|consen 1051 VIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTM--CGNGD-QFAVSTKDGSVRVLRI 1127 (1431)
T ss_pred ccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEe--ccCCC-eEEEEcCCCeEEEEEc
Confidence 445555 45899999999999999986532 2222333333 4444555555 45554 7888899999999988
Q ss_pred CCce-------EEEEee--cCCCeeEE-EECC-CCC-EEEEEecCCcEEEEECCCCceeEeeec--CCCcEEEEEEcCCC
Q 013184 267 ERFQ-------LSKHFS--FPWPVNHT-SLSP-DGK-LLVIVGDNPEGILVDSQTGKAIMPLCG--HLDFSFASAWHPDG 332 (448)
Q Consensus 267 ~~~~-------~~~~~~--~~~~v~~~-~~sp-~~~-~l~~~~~d~~i~i~d~~~~~~~~~l~~--h~~~v~~~~~~p~g 332 (448)
.... ..+... ..+.+.++ ++.. .+. .++.+...+.|..||+++.....+++. ..+.|++++.+|.+
T Consensus 1128 d~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~ 1207 (1431)
T KOG1240|consen 1128 DHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWC 1207 (1431)
T ss_pred cccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCc
Confidence 7521 111111 33443333 3332 334 677788889999999998776665543 45789999999999
Q ss_pred CEEEEEeCCCcEEEEEccCCCcceEEEc-cCCCCeEEEEEcCCC---CEEEEEe--CCCeEEEEECCCCceeeeeecCc-
Q 013184 333 RIFATGNQDKTCRVWDVRNLSKSVAVLK-GNLGAIRSIRFTSDG---NFMAMAE--PADFVHVYDAKNGFEKEQEIDFF- 405 (448)
Q Consensus 333 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~~v~~l~~sp~g---~~l~s~~--~d~~v~vwd~~~~~~~~~~~~~~- 405 (448)
+++++|+..|.+-+||+|= +.++..+. ++..+|+.+..+|-- .+.++++ ..+.|.+|++.+|.+...+....
T Consensus 1208 ~WlviGts~G~l~lWDLRF-~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~ 1286 (1431)
T KOG1240|consen 1208 NWLVIGTSRGQLVLWDLRF-RVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDG 1286 (1431)
T ss_pred eEEEEecCCceEEEEEeec-CceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCC
Confidence 9999999999999999986 55555443 455788888877643 4555554 46789999999987665554321
Q ss_pred ----------------Cc--eEEEEEccCCCeEEEEEecCCcc
Q 013184 406 ----------------GE--ISGMTFSPDTEALFIGVWDRTYG 430 (448)
Q Consensus 406 ----------------~~--v~~~~fspdg~~L~~~~~D~~~~ 430 (448)
.. ....++..-+.++++|+.|..++
T Consensus 1287 ~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR 1329 (1431)
T KOG1240|consen 1287 APILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIR 1329 (1431)
T ss_pred CcchhhhcccccCCCCCcccceeeecccCCceeeecCCcccee
Confidence 11 11223333456788888886655
No 239
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=1.8e-10 Score=114.87 Aligned_cols=212 Identities=17% Similarity=0.176 Sum_probs=137.3
Q ss_pred eEEEEe--cCCEEEEEeCC---CeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCC--cEEEEec
Q 013184 194 VSTLAV--RDNLLIAGGFQ---GELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDC--GVRDFDM 266 (448)
Q Consensus 194 i~~l~~--~~~~lvsg~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg--~v~iwd~ 266 (448)
+.+.++ +++.|+..+.+ ..|.+|++.+..... +. ...+..... .++|+|..++++.+.++ .|++||+
T Consensus 201 ~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~---l~-~~~g~~~~~--~~SpDG~~la~~~~~~g~~~Iy~~d~ 274 (430)
T PRK00178 201 ILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ---IT-NFEGLNGAP--AWSPDGSKLAFVLSKDGNPEIYVMDL 274 (430)
T ss_pred eeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE---cc-CCCCCcCCe--EECCCCCEEEEEEccCCCceEEEEEC
Confidence 444444 88888776544 368888987665321 21 112222334 44999986666666665 5888899
Q ss_pred CCceEEEEeecCCCeeEEEECCCCCEEEEEecC---CcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCC-C
Q 013184 267 ERFQLSKHFSFPWPVNHTSLSPDGKLLVIVGDN---PEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQD-K 342 (448)
Q Consensus 267 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d---~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d-~ 342 (448)
.+++......+........|+|+|+.|+..+.. ..|.++++.+++... +...........|+|+|++|+..+.. +
T Consensus 275 ~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~~~~Spdg~~i~~~~~~~~ 353 (430)
T PRK00178 275 ASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNARPRLSADGKTLVMVHRQDG 353 (430)
T ss_pred CCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCC
Confidence 988766554455566778999999988877642 367788888777433 32222333457899999998877653 3
Q ss_pred --cEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEECCCCceeeeeecCcCceEEEEEccC
Q 013184 343 --TCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPA---DFVHVYDAKNGFEKEQEIDFFGEISGMTFSPD 416 (448)
Q Consensus 343 --~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d---~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspd 416 (448)
.|.+||+.+ +. ...+.. ........|+|+|++|+.++.. ..|.++++. +.....+..+.+.+...+|+|-
T Consensus 354 ~~~l~~~dl~t-g~-~~~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 354 NFHVAAQDLQR-GS-VRILTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN-GRVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred ceEEEEEECCC-CC-EEEccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcCCCCCcCCCccCCC
Confidence 477888865 33 333432 2223356899999999887654 357788875 4444445555677888888873
No 240
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.42 E-value=3.6e-12 Score=116.14 Aligned_cols=196 Identities=13% Similarity=0.138 Sum_probs=149.8
Q ss_pred eeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCC------ceEEEEee--cCCCeeEEEECCCCCEEEE
Q 013184 224 SFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMER------FQLSKHFS--FPWPVNHTSLSPDGKLLVI 295 (448)
Q Consensus 224 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~------~~~~~~~~--~~~~v~~~~~sp~~~~l~~ 295 (448)
.+|.+-...|.+.++++.+ +.++ ..|++|+.|..+++|.++. .+++.... |...|.|++|......+++
T Consensus 46 ~~~qKD~~~H~GCiNAlqF--S~N~-~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~S 122 (609)
T KOG4227|consen 46 PFCQKDVREHTGCINALQF--SHND-RFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYS 122 (609)
T ss_pred chhhhhhhhhccccceeee--ccCC-eEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEec
Confidence 4445555677888899988 5554 5999999999999999863 35555555 5678999999998999999
Q ss_pred EecCCcEEEEECCCCceeEeeecCC---CcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEE--EccCCCCeEEEE
Q 013184 296 VGDNPEGILVDSQTGKAIMPLCGHL---DFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAV--LKGNLGAIRSIR 370 (448)
Q Consensus 296 ~~~d~~i~i~d~~~~~~~~~l~~h~---~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~--~~~~~~~v~~l~ 370 (448)
|+.+++|.+-|+.+.+.+..+. |. +.|+.+..+|..+.|++.+.++.|.+||+|....+... +.........+-
T Consensus 123 G~~~~~VI~HDiEt~qsi~V~~-~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~ 201 (609)
T KOG4227|consen 123 GERWGTVIKHDIETKQSIYVAN-ENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAE 201 (609)
T ss_pred CCCcceeEeeecccceeeeeec-ccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeee
Confidence 9999999999999999887764 44 48999999999999999999999999999874433322 223345678899
Q ss_pred EcCCC-CEEEEEeCCCeEEEEECCCCcee-eeee---cCcC---ceEEEEEccCCCeEEEE
Q 013184 371 FTSDG-NFMAMAEPADFVHVYDAKNGFEK-EQEI---DFFG---EISGMTFSPDTEALFIG 423 (448)
Q Consensus 371 ~sp~g-~~l~s~~~d~~v~vwd~~~~~~~-~~~~---~~~~---~v~~~~fspdg~~L~~~ 423 (448)
|+|.- ++|++++..+-+-|||++..... .+.. +... .-.++.|+|.|..|.+-
T Consensus 202 F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msi 262 (609)
T KOG4227|consen 202 FHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSI 262 (609)
T ss_pred ecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhh
Confidence 99965 67888888888999998765432 2211 1222 23678899999877643
No 241
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.42 E-value=3.2e-11 Score=106.42 Aligned_cols=228 Identities=17% Similarity=0.164 Sum_probs=156.0
Q ss_pred cCC-EEEEEeCCCeEEEEEcCCCCceeEEEeecCCC-CceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEE--Ee
Q 013184 200 RDN-LLIAGGFQGELICKYLDQPGVSFCSRTTYDEN-AITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSK--HF 275 (448)
Q Consensus 200 ~~~-~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~--~~ 275 (448)
++. .|+-+...|.|.++...........+-..... ..+.++++.+++.+. .++++-.+|.+.+-+.....+.. ..
T Consensus 83 ~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~-~i~vs~s~G~~~~v~~t~~~le~vq~w 161 (339)
T KOG0280|consen 83 DGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGT-KIFVSDSRGSISGVYETEMVLEKVQTW 161 (339)
T ss_pred CccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCc-eEEEEcCCCcEEEEecceeeeeecccc
Confidence 444 67778889999998876544322222111111 122366666688776 68888888999866655544443 44
Q ss_pred e-cCCCeeEEEECC-CCCEEEEEecCCcEEEEECCC-CceeEe-eecCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEEcc
Q 013184 276 S-FPWPVNHTSLSP-DGKLLVIVGDNPEGILVDSQT-GKAIMP-LCGHLDFSFASAWHP-DGRIFATGNQDKTCRVWDVR 350 (448)
Q Consensus 276 ~-~~~~v~~~~~sp-~~~~l~~~~~d~~i~i~d~~~-~~~~~~-l~~h~~~v~~~~~~p-~g~~l~s~~~d~~i~iwd~~ 350 (448)
+ |..+++...|+- +.+++++|++|+.+..||++. ++.+.. .+-|...|.++.-+| .+.+|+||+.|-.|++||.|
T Consensus 162 k~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtR 241 (339)
T KOG0280|consen 162 KVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTR 241 (339)
T ss_pred cccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehh
Confidence 4 888888888876 667999999999999999993 344433 456889999998876 67899999999999999999
Q ss_pred CCCcceEEEccCCCCeEEEEEcCC--CCEEEEEeCCCeEEEEECCCCcee-----eeeecCcCceEEEEEccCCCeEEEE
Q 013184 351 NLSKSVAVLKGNLGAIRSIRFTSD--GNFMAMAEPADFVHVYDAKNGFEK-----EQEIDFFGEISGMTFSPDTEALFIG 423 (448)
Q Consensus 351 ~~~~~~~~~~~~~~~v~~l~~sp~--g~~l~s~~~d~~v~vwd~~~~~~~-----~~~~~~~~~v~~~~fspdg~~L~~~ 423 (448)
+.++++..-. ..+.|..++++|. ++.|+++-..| .+|-++..+... .....|.+-+.+-.|..-..+|+++
T Consensus 242 nm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATC 319 (339)
T KOG0280|consen 242 NMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATC 319 (339)
T ss_pred cccCccccCc-cccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeeccccccceeeccccccccceeeee
Confidence 8888886554 3478999999994 34566655555 677777654432 2233455666666664443456665
Q ss_pred -EecCCcc
Q 013184 424 -VWDRTYG 430 (448)
Q Consensus 424 -~~D~~~~ 430 (448)
.+|+.+.
T Consensus 320 sFYDk~~~ 327 (339)
T KOG0280|consen 320 SFYDKKIR 327 (339)
T ss_pred ecccccee
Confidence 5565533
No 242
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.42 E-value=2.2e-10 Score=102.63 Aligned_cols=266 Identities=14% Similarity=0.088 Sum_probs=172.5
Q ss_pred cceeeeCCCCe-EEEec-CCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cC-CEEEEEeCC
Q 013184 136 RNLVWSTSKHD-VYLMS-HFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RD-NLLIAGGFQ 210 (448)
Q Consensus 136 r~l~~~~~~~~-v~~~~-~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~-~~lvsg~~d 210 (448)
..+.|...+-. ++.+. +..|.+|++...+-.+.++-. . ..++++++ +| .+|.+..++
T Consensus 52 ~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg--~----------------agls~~~WSPdgrhiL~tseF~ 113 (447)
T KOG4497|consen 52 VYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG--Q----------------AGLSSISWSPDGRHILLTSEFD 113 (447)
T ss_pred hheeeeccceeeeeeeeccceEEEEEeecceeEEEeccC--C----------------CcceeeeECCCcceEeeeecce
Confidence 34567655544 44444 558999998776666665432 1 13555555 77 678888999
Q ss_pred CeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEe-CC-------------------------------
Q 013184 211 GELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASN-ND------------------------------- 258 (448)
Q Consensus 211 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s-~d------------------------------- 258 (448)
-.|.+|.+.+...... .+....+..+.+ +|+|. +.+.++ .|
T Consensus 114 lriTVWSL~t~~~~~~----~~pK~~~kg~~f--~~dg~-f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieW 186 (447)
T KOG4497|consen 114 LRITVWSLNTQKGYLL----PHPKTNVKGYAF--HPDGQ-FCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEW 186 (447)
T ss_pred eEEEEEEeccceeEEe----cccccCceeEEE--CCCCc-eeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceE
Confidence 9999999988764321 222222344444 77775 222222 12
Q ss_pred ----CcEEEEecCCceEEEEeecCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCc-----------------------
Q 013184 259 ----CGVRDFDMERFQLSKHFSFPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGK----------------------- 311 (448)
Q Consensus 259 ----g~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~----------------------- 311 (448)
..+-+||.--.-.+..++-.-.+..++|+|.+++|++|+.|+.+++.+--+.+
T Consensus 187 sPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~ 266 (447)
T KOG4497|consen 187 SPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKET 266 (447)
T ss_pred CCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhh
Confidence 22334432111112223344578899999999999999999998876532110
Q ss_pred -------------------------------------eeEeeec------CCCcEEEEEEcCCCCEEEEEeCC--CcEEE
Q 013184 312 -------------------------------------AIMPLCG------HLDFSFASAWHPDGRIFATGNQD--KTCRV 346 (448)
Q Consensus 312 -------------------------------------~~~~l~~------h~~~v~~~~~~p~g~~l~s~~~d--~~i~i 346 (448)
.++.++. ..-.+--++|++|..+++|-+.. +.+-+
T Consensus 267 ~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~ 346 (447)
T KOG4497|consen 267 FSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWL 346 (447)
T ss_pred cchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEE
Confidence 0111111 12235568999999999987643 57999
Q ss_pred EEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEec
Q 013184 347 WDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWD 426 (448)
Q Consensus 347 wd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D 426 (448)
||+++ .+...++ ....+|+...|.|....|+.+.....+++|-.. |-.........-.|..+.|.-+|+.++..+.|
T Consensus 347 Wdlq~-l~l~avL-iQk~piraf~WdP~~prL~vctg~srLY~W~ps-g~~~V~vP~~GF~i~~l~W~~~g~~i~l~~kD 423 (447)
T KOG4497|consen 347 WDLQN-LKLHAVL-IQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPS-GPRVVGVPKKGFNIQKLQWLQPGEFIVLCGKD 423 (447)
T ss_pred Eechh-hhhhhhh-hhccceeEEEeCCCCceEEEEcCCceEEEEcCC-CceEEecCCCCceeeeEEecCCCcEEEEEcCC
Confidence 99986 3333333 355689999999998888888888889999954 44444444445679999999999999999988
Q ss_pred CCc
Q 013184 427 RTY 429 (448)
Q Consensus 427 ~~~ 429 (448)
.-.
T Consensus 424 afc 426 (447)
T KOG4497|consen 424 AFC 426 (447)
T ss_pred ceE
Confidence 543
No 243
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.41 E-value=2.1e-12 Score=120.84 Aligned_cols=229 Identities=16% Similarity=0.190 Sum_probs=161.9
Q ss_pred eeEEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecC-Cc
Q 013184 193 QVSTLAV--RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDME-RF 269 (448)
Q Consensus 193 ~i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~-~~ 269 (448)
.|.++.| .|..|++|+.|-.|.+|++.....+ .....+|..-+-...|.... +...+++++.||.|++=.+. ++
T Consensus 144 cVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~--l~f~SGH~~NvfQaKFiP~s-~d~ti~~~s~dgqvr~s~i~~t~ 220 (559)
T KOG1334|consen 144 CVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPK--LSFESGHCNNVFQAKFIPFS-GDRTIVTSSRDGQVRVSEILETG 220 (559)
T ss_pred ccceeeecccCceeeccCccceEEeehhhccCcc--cccccccccchhhhhccCCC-CCcCceeccccCceeeeeecccc
Confidence 4677888 7899999999999999999887755 33333443333333343333 34479999999999988754 34
Q ss_pred eEE---EEeecCCCeeEEEECC-CCCEEEEEecCCcEEEEECCCCceeEeee---cCCC---cEEEEEEcC-CCCEEEEE
Q 013184 270 QLS---KHFSFPWPVNHTSLSP-DGKLLVIVGDNPEGILVDSQTGKAIMPLC---GHLD---FSFASAWHP-DGRIFATG 338 (448)
Q Consensus 270 ~~~---~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~i~i~d~~~~~~~~~l~---~h~~---~v~~~~~~p-~g~~l~s~ 338 (448)
.+. ...+|.++|.-++.-| ....|.+++.|+.+.-+|++.+.+...+. .+.. ..++++.+| +...+++|
T Consensus 221 ~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVg 300 (559)
T KOG1334|consen 221 YVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVG 300 (559)
T ss_pred ceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccC
Confidence 333 2233999999999999 55678899999999999999876644432 2333 567889999 44589999
Q ss_pred eCCCcEEEEEccCCCc-----ceEEEccC------CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----------
Q 013184 339 NQDKTCRVWDVRNLSK-----SVAVLKGN------LGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGF----------- 396 (448)
Q Consensus 339 ~~d~~i~iwd~~~~~~-----~~~~~~~~------~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~----------- 396 (448)
+.|..+++||.|...+ .+..+..| .-.|++++|+.+|.-|+++-.|-.|++|.-..+.
T Consensus 301 G~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~ 380 (559)
T KOG1334|consen 301 GSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPRE 380 (559)
T ss_pred ChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchh
Confidence 9999999999985322 12222222 2369999999888777777888889999533221
Q ss_pred -eeee-eecCcC--ceEEEEE-ccCCCeEEEEE
Q 013184 397 -EKEQ-EIDFFG--EISGMTF-SPDTEALFIGV 424 (448)
Q Consensus 397 -~~~~-~~~~~~--~v~~~~f-spdg~~L~~~~ 424 (448)
...+ +++|.. .|.++-| -|..+|+++|+
T Consensus 381 ~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGS 413 (559)
T KOG1334|consen 381 QYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGS 413 (559)
T ss_pred hccchhhcccccccccceeeeccCccceEEecC
Confidence 1222 556653 4777775 57888888874
No 244
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.40 E-value=7.6e-12 Score=111.83 Aligned_cols=186 Identities=18% Similarity=0.206 Sum_probs=138.3
Q ss_pred eCCCCCeeEEEEeCCCcEEEEecCCceEEEEeecCCCeeEEEECCCCCEEEE-EecCCcEEEEECCCCceeEeeecCCCc
Q 013184 244 NSPSGGIHFMASNNDCGVRDFDMERFQLSKHFSFPWPVNHTSLSPDGKLLVI-VGDNPEGILVDSQTGKAIMPLCGHLDF 322 (448)
Q Consensus 244 ~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~~d~~i~i~d~~~~~~~~~l~~h~~~ 322 (448)
++|+|+ ++++++.- .+.|-|.++.++.+.+.--..|..+.|..+.-+++. ...++.|.+|++...+-...+....++
T Consensus 16 fSp~g~-yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~ag 93 (447)
T KOG4497|consen 16 FSPCGN-YIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAG 93 (447)
T ss_pred ECCCCC-eeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCc
Confidence 389987 77777654 788889998887777665567888999988776654 467889999999988888888888899
Q ss_pred EEEEEEcCCCCEEE-EEeCCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCC-----------------
Q 013184 323 SFASAWHPDGRIFA-TGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPA----------------- 384 (448)
Q Consensus 323 v~~~~~~p~g~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d----------------- 384 (448)
+.+++|+|+|+.|+ +..-+-.|.+|.+.+ .+ ..-++-....+..++|+|+|++.+.++.-
T Consensus 94 ls~~~WSPdgrhiL~tseF~lriTVWSL~t-~~-~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll 171 (447)
T KOG4497|consen 94 LSSISWSPDGRHILLTSEFDLRITVWSLNT-QK-GYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILL 171 (447)
T ss_pred ceeeeECCCcceEeeeecceeEEEEEEecc-ce-eEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHH
Confidence 99999999997554 555688899999975 33 33333334456889999999998866532
Q ss_pred -------------------CeEEEEECCCCceeeeeecCc-CceEEEEEccCCCeEEEEEecCCcceEEEE
Q 013184 385 -------------------DFVHVYDAKNGFEKEQEIDFF-GEISGMTFSPDTEALFIGVWDRTYGSLLQY 435 (448)
Q Consensus 385 -------------------~~v~vwd~~~~~~~~~~~~~~-~~v~~~~fspdg~~L~~~~~D~~~~~ll~~ 435 (448)
+.+.|||..-...+. .-+. -.+..++|+|.+++|++|++|+.++.+-++
T Consensus 172 ~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~--aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~ 240 (447)
T KOG4497|consen 172 KEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVY--AYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHF 240 (447)
T ss_pred HhcCCCcccccCceECCCCcEEEEecchhhheee--eeeeccceeEEEeccccceEEeeccchhhhhhcee
Confidence 235555543322222 1122 358899999999999999999988876554
No 245
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.39 E-value=1.4e-10 Score=102.35 Aligned_cols=223 Identities=14% Similarity=0.130 Sum_probs=149.5
Q ss_pred eEEEEecCCEEEEEe------------CCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCe-eEEEEeCCCc
Q 013184 194 VSTLAVRDNLLIAGG------------FQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGI-HFMASNNDCG 260 (448)
Q Consensus 194 i~~l~~~~~~lvsg~------------~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~s~dg~ 260 (448)
+.++..-.++|++|+ ..|.+.++++..........+..........+.|..-+.++. .++-+-..|.
T Consensus 17 ~C~l~~~~~vLa~GTY~Lde~d~~smvR~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~ 96 (339)
T KOG0280|consen 17 ICCLCHTRNVLAAGTYLLDEGDYPSMVRSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQ 96 (339)
T ss_pred ccccccccceEEEeeEEecCCCCchheeccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccce
Confidence 444444334666654 456778888766553221111111112222333333343333 5666677888
Q ss_pred EEEEecCCceEEEEee------c-CCCeeEEEECCCCCEEEEEecCCcEEEEECCCCce--eEeeecCCCcEEEEEEcC-
Q 013184 261 VRDFDMERFQLSKHFS------F-PWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKA--IMPLCGHLDFSFASAWHP- 330 (448)
Q Consensus 261 v~iwd~~~~~~~~~~~------~-~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~--~~~l~~h~~~v~~~~~~p- 330 (448)
|.++.........++. . .....++.|++.+..++++-.+|.+.+.+...... ++.+++|.-......|+.
T Consensus 97 i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~ 176 (339)
T KOG0280|consen 97 IQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDK 176 (339)
T ss_pred EEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccC
Confidence 8888765433333332 0 11245788999999999999999998766555543 347889999999888886
Q ss_pred CCCEEEEEeCCCcEEEEEccCCCcceEE-EccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeeeeecCcCce
Q 013184 331 DGRIFATGNQDKTCRVWDVRNLSKSVAV-LKGNLGAIRSIRFTS-DGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEI 408 (448)
Q Consensus 331 ~g~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~~v~~l~~sp-~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v 408 (448)
+.+++.+|+.|+.+..||+|.+++.+.. .+-|...|.++.-+| .+.+|++|+.|..|++||.++-..........|.|
T Consensus 177 ~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGV 256 (339)
T KOG0280|consen 177 EPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGV 256 (339)
T ss_pred CCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccce
Confidence 5579999999999999999965555543 567888999998886 56899999999999999998544332333345889
Q ss_pred EEEEEccC
Q 013184 409 SGMTFSPD 416 (448)
Q Consensus 409 ~~~~fspd 416 (448)
+.+.++|.
T Consensus 257 WRi~~~p~ 264 (339)
T KOG0280|consen 257 WRIKHHPE 264 (339)
T ss_pred EEEEecch
Confidence 99999995
No 246
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.38 E-value=3.8e-09 Score=96.41 Aligned_cols=231 Identities=17% Similarity=0.182 Sum_probs=155.4
Q ss_pred EEEEe--cCCEEEEEeC---CCeEEEEEcCCC-C-ceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecC
Q 013184 195 STLAV--RDNLLIAGGF---QGELICKYLDQP-G-VSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDME 267 (448)
Q Consensus 195 ~~l~~--~~~~lvsg~~---dg~i~vw~~~~~-~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~ 267 (448)
+-|++ +.+.|.++.. +|.|..+.++.. + ..+..+.. ......+.+++ +++|..++++...-|.|.++-+.
T Consensus 43 tyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~-~~g~~p~yvsv--d~~g~~vf~AnY~~g~v~v~p~~ 119 (346)
T COG2706 43 TYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQT-LPGSPPCYVSV--DEDGRFVFVANYHSGSVSVYPLQ 119 (346)
T ss_pred ceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccc-cCCCCCeEEEE--CCCCCEEEEEEccCceEEEEEcc
Confidence 44444 6777887765 478888888864 2 22222222 22233356666 88887555555678999999886
Q ss_pred C-ce---EEEEeecCCC----------eeEEEECCCCCEEEEEe--cCCcEEEEECCCCceeEeee---cCCCcEEEEEE
Q 013184 268 R-FQ---LSKHFSFPWP----------VNHTSLSPDGKLLVIVG--DNPEGILVDSQTGKAIMPLC---GHLDFSFASAW 328 (448)
Q Consensus 268 ~-~~---~~~~~~~~~~----------v~~~~~sp~~~~l~~~~--~d~~i~i~d~~~~~~~~~l~---~h~~~v~~~~~ 328 (448)
. |. .+..+.|.++ +.+..+.|++++|++.. .| .|.+|++..|+....-. ........+.|
T Consensus 120 ~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D-ri~~y~~~dg~L~~~~~~~v~~G~GPRHi~F 198 (346)
T COG2706 120 ADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTD-RIFLYDLDDGKLTPADPAEVKPGAGPRHIVF 198 (346)
T ss_pred cCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCc-eEEEEEcccCccccccccccCCCCCcceEEE
Confidence 5 43 3344446655 88899999999998875 44 79999998776532211 23455678999
Q ss_pred cCCCCEEEEEeC-CCcEEEEEccCCCcceEEEccC---------CCCeEEEEEcCCCCEEEEEeC-CCeEEEEECCCC--
Q 013184 329 HPDGRIFATGNQ-DKTCRVWDVRNLSKSVAVLKGN---------LGAIRSIRFTSDGNFMAMAEP-ADFVHVYDAKNG-- 395 (448)
Q Consensus 329 ~p~g~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~---------~~~v~~l~~sp~g~~l~s~~~-d~~v~vwd~~~~-- 395 (448)
+|++++....++ +++|-+|........+..++.+ ..+...|..+|+|+||.++.. .+.|.+|.+...
T Consensus 199 Hpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g 278 (346)
T COG2706 199 HPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGG 278 (346)
T ss_pred cCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCC
Confidence 999998877665 8899999997643444443322 235677899999999988753 247888876543
Q ss_pred cee--eeeecCcCceEEEEEccCCCeEEEEEecCCc
Q 013184 396 FEK--EQEIDFFGEISGMTFSPDTEALFIGVWDRTY 429 (448)
Q Consensus 396 ~~~--~~~~~~~~~v~~~~fspdg~~L~~~~~D~~~ 429 (448)
+.. .....+........|+|+|++|+++..|...
T Consensus 279 ~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~ 314 (346)
T COG2706 279 KLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDN 314 (346)
T ss_pred EEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCc
Confidence 221 1122233448899999999999999887654
No 247
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.38 E-value=1.6e-11 Score=124.70 Aligned_cols=191 Identities=15% Similarity=0.153 Sum_probs=149.8
Q ss_pred EecCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCC-ceEEEEee
Q 013184 198 AVRDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMER-FQLSKHFS 276 (448)
Q Consensus 198 ~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~-~~~~~~~~ 276 (448)
.+..+.++.++.+..+.+|+....... ..+.........+..+.-..-...++++|+.-+.|.+|.... ........
T Consensus 96 ~~e~k~i~l~~~~ns~~i~d~~~~~~~--~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~G 173 (967)
T KOG0974|consen 96 FEENKKIALVTSRNSLLIRDSKNSSVL--SKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKG 173 (967)
T ss_pred hhhcceEEEEEcCceEEEEecccCcee--hhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecc
Confidence 337788999999999999998765432 122222222222222222233356899999999999999863 33444555
Q ss_pred cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeE-eeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcc
Q 013184 277 FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIM-PLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKS 355 (448)
Q Consensus 277 ~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~-~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~ 355 (448)
|.+.|..+.++-+|.+++++++|..+++|++.+.+... ..-+|+..+..+.++|+ .++|++.|.++++|+.. ...
T Consensus 174 HeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~--~~~ 249 (967)
T KOG0974|consen 174 HEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN--GTQ 249 (967)
T ss_pred cCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecc--cce
Confidence 99999999999999999999999999999999988765 66689999999999998 89999999999999774 566
Q ss_pred eEEEccCCC-CeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 013184 356 VAVLKGNLG-AIRSIRFTSDGNFMAMAEPADFVHVYDAKN 394 (448)
Q Consensus 356 ~~~~~~~~~-~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~ 394 (448)
+.++..|.+ .|..++..+....+++++.|+.+++|++..
T Consensus 250 l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 250 LEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred ehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 668888864 689999999889999999999999999754
No 248
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.35 E-value=1.4e-08 Score=97.98 Aligned_cols=260 Identities=19% Similarity=0.220 Sum_probs=157.9
Q ss_pred ceeeeCCCCeEEEecC-----CeEEEEecCC--CceeEEEecC-CCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEE
Q 013184 137 NLVWSTSKHDVYLMSH-----FSIVHWSSLS--SKRTEVLDVS-GHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIA 206 (448)
Q Consensus 137 ~l~~~~~~~~v~~~~~-----~~v~~w~~~~--~~~~~~~~~~-gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvs 206 (448)
.+.+.+.++.+|.+.. +.|..|.... +....+-... +...| ..+++ ++++|++
T Consensus 41 ~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p-----------------~~i~~~~~g~~l~v 103 (345)
T PF10282_consen 41 WLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSP-----------------CHIAVDPDGRFLYV 103 (345)
T ss_dssp CEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCE-----------------EEEEECTTSSEEEE
T ss_pred eEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCc-----------------EEEEEecCCCEEEE
Confidence 3455667777777643 4677777644 3444433332 11222 33444 8888888
Q ss_pred Ee-CCCeEEEEEcCCCCceeEE-EeecC--------CCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCce--EEE-
Q 013184 207 GG-FQGELICKYLDQPGVSFCS-RTTYD--------ENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQ--LSK- 273 (448)
Q Consensus 207 g~-~dg~i~vw~~~~~~~~~~~-~~~~~--------~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~--~~~- 273 (448)
+. .+|.|.++.+...+..... ....+ .......-.+.++|+++.++++.-....|++|++.... +..
T Consensus 104 any~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~ 183 (345)
T PF10282_consen 104 ANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPV 183 (345)
T ss_dssp EETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEE
T ss_pred EEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEe
Confidence 76 4899999999886532222 11110 11122234445599998666655556689999987644 322
Q ss_pred -Ee--ecCCCeeEEEECCCCCEEEEEe-cCCcEEEEECC--CCce--eEeeec------CCCcEEEEEEcCCCCEEEEEe
Q 013184 274 -HF--SFPWPVNHTSLSPDGKLLVIVG-DNPEGILVDSQ--TGKA--IMPLCG------HLDFSFASAWHPDGRIFATGN 339 (448)
Q Consensus 274 -~~--~~~~~v~~~~~sp~~~~l~~~~-~d~~i~i~d~~--~~~~--~~~l~~------h~~~v~~~~~~p~g~~l~s~~ 339 (448)
.+ ......+.++|+|+++++++.. .++.|.++++. +++. ++.+.. .......++++|+|++|++++
T Consensus 184 ~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsn 263 (345)
T PF10282_consen 184 DSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSN 263 (345)
T ss_dssp EEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEE
T ss_pred eccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEe
Confidence 22 3556789999999999987776 46779888877 4432 222221 112578899999999888876
Q ss_pred C-CCcEEEEEccCCCc---ceEEEccCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEEC--CCCceeeeee-cCcCceEEE
Q 013184 340 Q-DKTCRVWDVRNLSK---SVAVLKGNLGAIRSIRFTSDGNFMAMAEP-ADFVHVYDA--KNGFEKEQEI-DFFGEISGM 411 (448)
Q Consensus 340 ~-d~~i~iwd~~~~~~---~~~~~~~~~~~v~~l~~sp~g~~l~s~~~-d~~v~vwd~--~~~~~~~~~~-~~~~~v~~~ 411 (448)
. ..+|.+|++..... .+..+.......+.+.++|+|++|+++.. ++.|.+|++ .+|.....-. .....+.+|
T Consensus 264 r~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci 343 (345)
T PF10282_consen 264 RGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCI 343 (345)
T ss_dssp CTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEE
T ss_pred ccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEE
Confidence 5 56899999943222 23333333445799999999999999874 568999866 5665443322 223456677
Q ss_pred EE
Q 013184 412 TF 413 (448)
Q Consensus 412 ~f 413 (448)
.|
T Consensus 344 ~f 345 (345)
T PF10282_consen 344 VF 345 (345)
T ss_dssp EE
T ss_pred eC
Confidence 65
No 249
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.34 E-value=5e-11 Score=121.23 Aligned_cols=186 Identities=14% Similarity=0.046 Sum_probs=149.4
Q ss_pred eEEEEeCCCcEEEEecCCceEEEEeecCCCe-----eEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEE
Q 013184 251 HFMASNNDCGVRDFDMERFQLSKHFSFPWPV-----NHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFA 325 (448)
Q Consensus 251 ~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v-----~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~ 325 (448)
.++.++.+..+.+||...+.+...+.+.... .-+.++++.-++++|+.-+.|.+|.....+....+.+|.+.+++
T Consensus 101 ~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~ 180 (967)
T KOG0974|consen 101 KIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFS 180 (967)
T ss_pred eEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEE
Confidence 6777777889999999887777666644322 22334667778999999999999998744433468899999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCc
Q 013184 326 SAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFF 405 (448)
Q Consensus 326 ~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~ 405 (448)
+.|+-+|+++++.+.|.++|+|++.+......+.-+|.+.|..++|.|+ .+++++.|.+.++|+.. +..+..+..|.
T Consensus 181 i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~ 257 (967)
T KOG0974|consen 181 IVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHS 257 (967)
T ss_pred EEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecc-cceehhhhhhh
Confidence 9999999999999999999999998744444477789999999999998 99999999999999754 45555666776
Q ss_pred C-ceEEEEEccCCCeEEEEEecCCcceEEEEeccc
Q 013184 406 G-EISGMTFSPDTEALFIGVWDRTYGSLLQYNRCR 439 (448)
Q Consensus 406 ~-~v~~~~fspdg~~L~~~~~D~~~~~ll~~~~~~ 439 (448)
+ .|+.++..++...+++++.|++++..-...+..
T Consensus 258 g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~~ 292 (967)
T KOG0974|consen 258 GKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRGL 292 (967)
T ss_pred hcceeEEEEcCCceEEEeeccCcchhhhhhhcccc
Confidence 4 599999999999999999999887654444443
No 250
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.32 E-value=1.6e-10 Score=110.40 Aligned_cols=193 Identities=16% Similarity=0.256 Sum_probs=136.9
Q ss_pred CCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEE--E--------------------------Eee---------
Q 013184 234 NAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLS--K--------------------------HFS--------- 276 (448)
Q Consensus 234 ~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~--~--------------------------~~~--------- 276 (448)
....+.+.+ +|+|..++++|..--.|++||+....+. + .+.
T Consensus 51 p~ast~ik~--s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy 128 (703)
T KOG2321|consen 51 PTASTRIKV--SPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY 128 (703)
T ss_pred ccccceeEe--cCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence 344445555 8999988999999999999998753221 0 000
Q ss_pred ---cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCC
Q 013184 277 ---FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLS 353 (448)
Q Consensus 277 ---~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~ 353 (448)
-+..-..++++.-.--|+.++....|+-+++..|+.+..+......+++|..++-..+|++|+.+|.|..||.|. .
T Consensus 129 ~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~-k 207 (703)
T KOG2321|consen 129 RTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRD-K 207 (703)
T ss_pred eeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchh-h
Confidence 112223344443223344455555788899999999999988889999999999989999999999999999987 4
Q ss_pred cceEEEcc------CCC-----CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCc--CceEEEEEccCCCeE
Q 013184 354 KSVAVLKG------NLG-----AIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFF--GEISGMTFSPDTEAL 420 (448)
Q Consensus 354 ~~~~~~~~------~~~-----~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~--~~v~~~~fspdg~~L 420 (448)
..+..+.. |.+ .|+++.|+.+|-.+++|...|.|.|||+++.+++. ...|. -+|..+.|.+.+..=
T Consensus 208 srv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~-~kdh~~e~pi~~l~~~~~~~q~ 286 (703)
T KOG2321|consen 208 SRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLL-VKDHGYELPIKKLDWQDTDQQN 286 (703)
T ss_pred hhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCcee-ecccCCccceeeecccccCCCc
Confidence 44444332 333 49999999999999999999999999999876653 34444 478999998763332
Q ss_pred EEEEecCCcc
Q 013184 421 FIGVWDRTYG 430 (448)
Q Consensus 421 ~~~~~D~~~~ 430 (448)
.+.+.|..+-
T Consensus 287 ~v~S~Dk~~~ 296 (703)
T KOG2321|consen 287 KVVSMDKRIL 296 (703)
T ss_pred eEEecchHHh
Confidence 3333343333
No 251
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.31 E-value=3.6e-11 Score=112.73 Aligned_cols=272 Identities=14% Similarity=0.191 Sum_probs=187.6
Q ss_pred CCCeEEEe-c-CCeEEEEecCCCceeEEEecC-CCCCCCCCCCCCcccCCcceeeEEEEe-cCCEEEEEeCCCeEEEEEc
Q 013184 143 SKHDVYLM-S-HFSIVHWSSLSSKRTEVLDVS-GHVAPCEKHPGNLLEGFTQTQVSTLAV-RDNLLIAGGFQGELICKYL 218 (448)
Q Consensus 143 ~~~~v~~~-~-~~~v~~w~~~~~~~~~~~~~~-gh~~p~~~~~~~~~~~~~~~~i~~l~~-~~~~lvsg~~dg~i~vw~~ 218 (448)
..+++.++ + +-.|.+|+.... ..++++. ||..... +-.-|-+ +...+++++.||++++-.+
T Consensus 152 ~~Gd~l~SgSDD~~vv~WdW~~~--~~~l~f~SGH~~Nvf-------------QaKFiP~s~d~ti~~~s~dgqvr~s~i 216 (559)
T KOG1334|consen 152 QRGDVLASGSDDLQVVVWDWVSG--SPKLSFESGHCNNVF-------------QAKFIPFSGDRTIVTSSRDGQVRVSEI 216 (559)
T ss_pred ccCceeeccCccceEEeehhhcc--Ccccccccccccchh-------------hhhccCCCCCcCceeccccCceeeeee
Confidence 33444443 3 345899998653 3444443 4433210 1112222 5678999999999999888
Q ss_pred CCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee----cCC---CeeEEEECC-CC
Q 013184 219 DQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS----FPW---PVNHTSLSP-DG 290 (448)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~----~~~---~v~~~~~sp-~~ 290 (448)
...+..........|.+.+..+++ .|.....|.+++.|+.+.-+|+....+...+. ... ..+.++..| +.
T Consensus 217 ~~t~~~e~t~rl~~h~g~vhklav--~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt 294 (559)
T KOG1334|consen 217 LETGYVENTKRLAPHEGPVHKLAV--EPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNT 294 (559)
T ss_pred ccccceecceecccccCccceeee--cCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCc
Confidence 776655444455566677777776 67777789999999999999998765443332 222 567889999 45
Q ss_pred CEEEEEecCCcEEEEECCCCc------eeEeeec------CCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCC-C----
Q 013184 291 KLLVIVGDNPEGILVDSQTGK------AIMPLCG------HLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNL-S---- 353 (448)
Q Consensus 291 ~~l~~~~~d~~i~i~d~~~~~------~~~~l~~------h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~-~---- 353 (448)
..+++++.|..+++||.+.-. .+.++.. ..-.|++++|+.++.-|+++-.|-.|.++.-... +
T Consensus 295 ~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~ 374 (559)
T KOG1334|consen 295 NEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPD 374 (559)
T ss_pred cccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCC
Confidence 589999999999999986432 1223322 2345899999987776666666777898843211 1
Q ss_pred ------cce-EEEccCCC--CeEEEEE-cCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEE
Q 013184 354 ------KSV-AVLKGNLG--AIRSIRF-TSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIG 423 (448)
Q Consensus 354 ------~~~-~~~~~~~~--~v~~l~~-sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~ 423 (448)
..+ .++++|.. .|..+-| -|...|+++|+..|.|.||+-.+++.+..+.+-..-|++|.=+|--..||++
T Consensus 375 ~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsS 454 (559)
T KOG1334|consen 375 PSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASS 454 (559)
T ss_pred CCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhcc
Confidence 112 23677764 4666655 5788999999999999999988888776666655589999999999999999
Q ss_pred EecCCcce
Q 013184 424 VWDRTYGS 431 (448)
Q Consensus 424 ~~D~~~~~ 431 (448)
+-|..|+.
T Consensus 455 Gid~DVKI 462 (559)
T KOG1334|consen 455 GIDHDVKI 462 (559)
T ss_pred CCccceee
Confidence 98866543
No 252
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.31 E-value=3.1e-10 Score=102.30 Aligned_cols=233 Identities=14% Similarity=0.194 Sum_probs=154.3
Q ss_pred eeEEEEe--cCCEEEEEeCCCeEEEEEcCCCCc---eeEEEeecCC-----------CCceeeEEEEeCCCCCeeEEEEe
Q 013184 193 QVSTLAV--RDNLLIAGGFQGELICKYLDQPGV---SFCSRTTYDE-----------NAITNAVEIYNSPSGGIHFMASN 256 (448)
Q Consensus 193 ~i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~---~~~~~~~~~~-----------~~~~~~v~~~~~~~~~~~l~s~s 256 (448)
-|+++.+ .|.+|++|..+|.|.++.-..... .+......|. ...++.+.+....+ ...++..+
T Consensus 27 iis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n-~a~FLlst 105 (433)
T KOG1354|consen 27 IISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGN-LAEFLLST 105 (433)
T ss_pred ceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCC-ccEEEEec
Confidence 4778877 899999999999999987554332 1222222221 12355666644333 34777888
Q ss_pred CCCcEEEEecCCce-----------------------------------EEEEee--cCCCeeEEEECCCCCEEEEEecC
Q 013184 257 NDCGVRDFDMERFQ-----------------------------------LSKHFS--FPWPVNHTSLSPDGKLLVIVGDN 299 (448)
Q Consensus 257 ~dg~v~iwd~~~~~-----------------------------------~~~~~~--~~~~v~~~~~sp~~~~l~~~~~d 299 (448)
+|.+|++|.+.... +.+.+. |+..|++++++.|+..++++ +|
T Consensus 106 NdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-Dd 184 (433)
T KOG1354|consen 106 NDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-DD 184 (433)
T ss_pred CCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-cc
Confidence 99999999764211 112233 66779999999998887765 55
Q ss_pred CcEEEEECCCCc-e--eEeeecCC-----CcEEEEEEcC-CCCEEEEEeCCCcEEEEEccCCCcceEE------------
Q 013184 300 PEGILVDSQTGK-A--IMPLCGHL-----DFSFASAWHP-DGRIFATGNQDKTCRVWDVRNLSKSVAV------------ 358 (448)
Q Consensus 300 ~~i~i~d~~~~~-~--~~~l~~h~-----~~v~~~~~~p-~g~~l~s~~~d~~i~iwd~~~~~~~~~~------------ 358 (448)
-.|.+|.+.-.. . +..++.+. .-|++..||| ..+.|+-++..|+||+-|+|...-|...
T Consensus 185 LRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~ 264 (433)
T KOG1354|consen 185 LRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSS 264 (433)
T ss_pred eeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcc
Confidence 689999876322 1 22333332 3478889999 4568888899999999999953222111
Q ss_pred ---EccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC-CceeeeeecCcC---------------ceEEEEEccCCCe
Q 013184 359 ---LKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKN-GFEKEQEIDFFG---------------EISGMTFSPDTEA 419 (448)
Q Consensus 359 ---~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~-~~~~~~~~~~~~---------------~v~~~~fspdg~~ 419 (448)
+..-...|..++|+++|+||++-.. -+|+|||+.. .+.+....-|.. .-..++|+-++.+
T Consensus 265 rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~ 343 (433)
T KOG1354|consen 265 RSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSY 343 (433)
T ss_pred hhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcce
Confidence 1112246889999999999998654 4799999944 344444443321 1346889999999
Q ss_pred EEEEEecCC
Q 013184 420 LFIGVWDRT 428 (448)
Q Consensus 420 L~~~~~D~~ 428 (448)
+++|+....
T Consensus 344 v~TGsy~n~ 352 (433)
T KOG1354|consen 344 VMTGSYNNV 352 (433)
T ss_pred Eecccccce
Confidence 999987543
No 253
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.31 E-value=2.4e-09 Score=100.41 Aligned_cols=145 Identities=19% Similarity=0.173 Sum_probs=114.1
Q ss_pred cCCCeeEEEECCCCCEEEEEecCC-cEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcc
Q 013184 277 FPWPVNHTSLSPDGKLLVIVGDNP-EGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKS 355 (448)
Q Consensus 277 ~~~~v~~~~~sp~~~~l~~~~~d~-~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~ 355 (448)
+.+.|.-..+.-+++-++.|..|| .+-|+|..+++. ..+....+.|.++..+|+|++++.++....+-+.|+.+ +..
T Consensus 358 ~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididn-gnv 435 (668)
T COG4946 358 KKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDN-GNV 435 (668)
T ss_pred CCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecC-CCe
Confidence 445566666776777788888888 788999888764 45666788999999999999999999999999999987 555
Q ss_pred eEEEccCCCCeEEEEEcCCCCEEEEEeCCC----eEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEE
Q 013184 356 VAVLKGNLGAIRSIRFTSDGNFMAMAEPAD----FVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGV 424 (448)
Q Consensus 356 ~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~----~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~ 424 (448)
...-+...+-|..+.|||+++++|.+-.+| .|+++|+..++.... ....+.=.+.+|.|||++|+--+
T Consensus 436 ~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~v-TT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 436 RLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDV-TTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred eEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEe-cCCcccccCcccCCCCcEEEEEe
Confidence 444455667899999999999999998877 699999988765433 33334456788999999998653
No 254
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.31 E-value=3.3e-09 Score=105.00 Aligned_cols=211 Identities=16% Similarity=0.096 Sum_probs=129.1
Q ss_pred EecCCE---EEEEeCCC--eEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCC----cEEEEecCC
Q 013184 198 AVRDNL---LIAGGFQG--ELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDC----GVRDFDMER 268 (448)
Q Consensus 198 ~~~~~~---lvsg~~dg--~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg----~v~iwd~~~ 268 (448)
+.+|+. +++...+| .|.+.++..+....... ..+..... .++|+|..++++...+| .+.+|++..
T Consensus 193 SPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~----~~g~~~~p--~wSPDG~~Laf~s~~~g~~di~~~~~~~~~ 266 (428)
T PRK01029 193 MHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILA----LQGNQLMP--TFSPRKKLLAFISDRYGNPDLFIQSFSLET 266 (428)
T ss_pred ccCCCceEEEEEEccCCCceEEEEECCCCCceEeec----CCCCccce--EECCCCCEEEEEECCCCCcceeEEEeeccc
Confidence 346653 22444444 56666776554322221 12222233 45999986666654433 344467664
Q ss_pred ---ceEEEEeec-CCCeeEEEECCCCCEEEEEec-CCcEEEE--ECCC-CceeEeeecCCCcEEEEEEcCCCCEEEEEeC
Q 013184 269 ---FQLSKHFSF-PWPVNHTSLSPDGKLLVIVGD-NPEGILV--DSQT-GKAIMPLCGHLDFSFASAWHPDGRIFATGNQ 340 (448)
Q Consensus 269 ---~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~~-d~~i~i~--d~~~-~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~ 340 (448)
++..+.... .......+|+|||+.|+..+. ++...|| ++.. +.....+..+...+....|+|||+.|+..+.
T Consensus 267 g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~ 346 (428)
T PRK01029 267 GAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSV 346 (428)
T ss_pred CCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEc
Confidence 343444432 234467899999998887763 5544444 5432 3334455555566778899999998887655
Q ss_pred C---CcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeC---CCeEEEEECCCCceeeeeecCcCceEEEEEc
Q 013184 341 D---KTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEP---ADFVHVYDAKNGFEKEQEIDFFGEISGMTFS 414 (448)
Q Consensus 341 d---~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~---d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fs 414 (448)
+ ..|.+||+.. ++ ...+......+....|+|||++|+.... ...|+++|+..++.. .+....+.+...+|+
T Consensus 347 ~~g~~~I~v~dl~~-g~-~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~-~Lt~~~g~~~~p~Ws 423 (428)
T PRK01029 347 IKGVRQICVYDLAT-GR-DYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTR-KIVIGSGEKRFPSWG 423 (428)
T ss_pred CCCCcEEEEEECCC-CC-eEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCcccCceec
Confidence 3 3689999865 33 3445444445678999999998886543 347899998876543 444455677888999
Q ss_pred cCC
Q 013184 415 PDT 417 (448)
Q Consensus 415 pdg 417 (448)
|-.
T Consensus 424 ~~~ 426 (428)
T PRK01029 424 AFP 426 (428)
T ss_pred CCC
Confidence 854
No 255
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.30 E-value=7.1e-09 Score=102.01 Aligned_cols=192 Identities=10% Similarity=0.015 Sum_probs=126.1
Q ss_pred EEEEeCCCCCeeEEEEeC---CCcEEEEecCCceEEEEeecCCCeeEEEECCCCCEEEEEec---CCcEEEEECCCCcee
Q 013184 240 VEIYNSPSGGIHFMASNN---DCGVRDFDMERFQLSKHFSFPWPVNHTSLSPDGKLLVIVGD---NPEGILVDSQTGKAI 313 (448)
Q Consensus 240 v~~~~~~~~~~~l~s~s~---dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---d~~i~i~d~~~~~~~ 313 (448)
+.-.++|+|...++..+. ...|.++|+.+++.......++......|+|||+.++.... +..|.++|+.+++.
T Consensus 191 ~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~- 269 (419)
T PRK04043 191 IFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL- 269 (419)
T ss_pred EeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-
Confidence 344559999753443333 35688999999887776667777778899999988776532 35788889887764
Q ss_pred EeeecCCCcEEEEEEcCCCCEEEEEeC-CC--cEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCC------
Q 013184 314 MPLCGHLDFSFASAWHPDGRIFATGNQ-DK--TCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPA------ 384 (448)
Q Consensus 314 ~~l~~h~~~v~~~~~~p~g~~l~s~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d------ 384 (448)
..+..+........|+|||+.|+..+. .+ .|.++|+.. +. ...+...... ...|||+|++|+.....
T Consensus 270 ~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~-g~-~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~~ 345 (419)
T PRK04043 270 TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNS-GS-VEQVVFHGKN--NSSVSTYKNYIVYSSRETNNEFG 345 (419)
T ss_pred EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCC-CC-eEeCccCCCc--CceECCCCCEEEEEEcCCCcccC
Confidence 345444433345689999987766653 33 466667753 33 3233222111 24899999999877653
Q ss_pred ---CeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEecCCcceEEEEecc
Q 013184 385 ---DFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDRTYGSLLQYNRC 438 (448)
Q Consensus 385 ---~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~~~~ll~~~~~ 438 (448)
..|.+.|+.++.. ..+... +......|+|||+.|+....++....+..+.-.
T Consensus 346 ~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~ 400 (419)
T PRK04043 346 KNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLN 400 (419)
T ss_pred CCCcEEEEEECCCCCe-EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecC
Confidence 2688889888754 333332 334468999999999888776655555555433
No 256
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.29 E-value=9.1e-09 Score=99.42 Aligned_cols=194 Identities=17% Similarity=0.121 Sum_probs=131.6
Q ss_pred CEE-EEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEeecCCC
Q 013184 202 NLL-IAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFSFPWP 280 (448)
Q Consensus 202 ~~l-vsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~ 280 (448)
+++ ++-..+|.|.+.|..+.+.. .++.... .. .....++|+|. ++++++.||.|.++|+.+++.+..+.....
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~--~~i~~~~-~~--h~~~~~s~Dgr-~~yv~~rdg~vsviD~~~~~~v~~i~~G~~ 79 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVV--ARIPTGG-AP--HAGLKFSPDGR-YLYVANRDGTVSVIDLATGKVVATIKVGGN 79 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEE--EEEE-ST-TE--EEEEE-TT-SS-EEEEEETTSEEEEEETTSSSEEEEEE-SSE
T ss_pred cEEEEEecCCCEEEEEECCCCeEE--EEEcCCC-Cc--eeEEEecCCCC-EEEEEcCCCeEEEEECCcccEEEEEecCCC
Confidence 444 55667899999998876644 3333222 22 23334588887 666778899999999999999999997777
Q ss_pred eeEEEECCCCCEEEEEe-cCCcEEEEECCCCceeEeeecC-------CCcEEEEEEcCCCCEEEEEeC-CCcEEEEEccC
Q 013184 281 VNHTSLSPDGKLLVIVG-DNPEGILVDSQTGKAIMPLCGH-------LDFSFASAWHPDGRIFATGNQ-DKTCRVWDVRN 351 (448)
Q Consensus 281 v~~~~~sp~~~~l~~~~-~d~~i~i~d~~~~~~~~~l~~h-------~~~v~~~~~~p~g~~l~s~~~-d~~i~iwd~~~ 351 (448)
..++++|++|++++++. ..+.+.++|.++.+.++.+... ...+.++.-+|....++..-. .+.|-+-|...
T Consensus 80 ~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d 159 (369)
T PF02239_consen 80 PRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD 159 (369)
T ss_dssp EEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTT
T ss_pred cceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecc
Confidence 89999999999998876 6889999999999998887642 345778888888885655544 47777778766
Q ss_pred CCcceEEEccCCCCeEEEEEcCCCCEEEEE-eCCCeEEEEECCCCceeeee
Q 013184 352 LSKSVAVLKGNLGAIRSIRFTSDGNFMAMA-EPADFVHVYDAKNGFEKEQE 401 (448)
Q Consensus 352 ~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~-~~d~~v~vwd~~~~~~~~~~ 401 (448)
...................|+|+|+|++++ ...+.|-++|..+++....+
T Consensus 160 ~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i 210 (369)
T PF02239_consen 160 PKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALI 210 (369)
T ss_dssp SSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred ccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEe
Confidence 433333333344567889999999987665 45678999999988766543
No 257
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.27 E-value=9.4e-10 Score=113.69 Aligned_cols=246 Identities=10% Similarity=0.053 Sum_probs=155.8
Q ss_pred eeCCCC-eEEEe--cCCeEEEEecCCCcee-EEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCCCeE
Q 013184 140 WSTSKH-DVYLM--SHFSIVHWSSLSSKRT-EVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQGEL 213 (448)
Q Consensus 140 ~~~~~~-~v~~~--~~~~v~~w~~~~~~~~-~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~dg~i 213 (448)
++.+.+ .+|.+ .+++|++|+...-... .+....-.. ...+..+.++.. .++.+|+|+.||.|
T Consensus 1055 a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~lty------------s~~~sr~~~vt~~~~~~~~Av~t~DG~v 1122 (1431)
T KOG1240|consen 1055 AVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTY------------SPEGSRVEKVTMCGNGDQFAVSTKDGSV 1122 (1431)
T ss_pred eecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEE------------eccCCceEEEEeccCCCeEEEEcCCCeE
Confidence 344444 55554 4788999997432111 111000000 011234555544 88999999999999
Q ss_pred EEEEcCCCCc----eeEEEeecCC-CCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee---cCCCeeEEE
Q 013184 214 ICKYLDQPGV----SFCSRTTYDE-NAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS---FPWPVNHTS 285 (448)
Q Consensus 214 ~vw~~~~~~~----~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~---~~~~v~~~~ 285 (448)
++..++.... ..+.+....+ .+.+..+.-+....+...++.+..-+.|..||+........++ ..+.|++++
T Consensus 1123 ~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~ 1202 (1431)
T KOG1240|consen 1123 RVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIV 1202 (1431)
T ss_pred EEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEE
Confidence 9999987321 1122222222 2222222221122333478888888999999998876655555 357899999
Q ss_pred ECCCCCEEEEEecCCcEEEEECCCCceeEeee-cCCCcEEEEEEcCCC---CEEEEEe--CCCcEEEEEccCCCcceEEE
Q 013184 286 LSPDGKLLVIVGDNPEGILVDSQTGKAIMPLC-GHLDFSFASAWHPDG---RIFATGN--QDKTCRVWDVRNLSKSVAVL 359 (448)
Q Consensus 286 ~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~-~h~~~v~~~~~~p~g---~~l~s~~--~d~~i~iwd~~~~~~~~~~~ 359 (448)
.+|.+.++++|...|.+.+||++-+.++..+. ++..++..+..+|-. ...++++ ..+.|.+|++.+ +.+..++
T Consensus 1203 idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~-g~~~~vl 1281 (1431)
T KOG1240|consen 1203 IDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMET-GLRQTVL 1281 (1431)
T ss_pred ecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeeccc-CcceEEE
Confidence 99999999999999999999999988887765 345677777777632 3444444 467899999976 4444443
Q ss_pred ccC-C------------------CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCcee
Q 013184 360 KGN-L------------------GAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEK 398 (448)
Q Consensus 360 ~~~-~------------------~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~ 398 (448)
-.. . -.....++...+.++.+|+.|..|+.||.......
T Consensus 1282 ~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1282 WASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred EcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence 322 1 01122333334578999999999999998765433
No 258
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=3.7e-09 Score=101.19 Aligned_cols=198 Identities=16% Similarity=0.246 Sum_probs=137.5
Q ss_pred EeCCCeEEEEEcCCCCce--eEEEeecCCCCceeeEEEEeCCCCCeeEEEEeC--C---------CcEEEEecCCceEEE
Q 013184 207 GGFQGELICKYLDQPGVS--FCSRTTYDENAITNAVEIYNSPSGGIHFMASNN--D---------CGVRDFDMERFQLSK 273 (448)
Q Consensus 207 g~~dg~i~vw~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~--d---------g~v~iwd~~~~~~~~ 273 (448)
+|.=+.+++|........ ...+... ....+.+.|++-|.-+|+.++. | .+++++++++..+.-
T Consensus 190 kGaPa~vri~~~~~~~~~~~~a~ksFF----kadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V 265 (566)
T KOG2315|consen 190 KGAPASVRIYKYPEEGQHQPVANKSFF----KADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSV 265 (566)
T ss_pred CCCCcEEEEeccccccccchhhhcccc----ccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEE
Confidence 455668899887633211 0011111 1224556667777656555543 2 368888888666666
Q ss_pred EeecCCCeeEEEECCCCCEEEEEe--cCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeC---CCcEEEEE
Q 013184 274 HFSFPWPVNHTSLSPDGKLLVIVG--DNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQ---DKTCRVWD 348 (448)
Q Consensus 274 ~~~~~~~v~~~~~sp~~~~l~~~~--~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~---d~~i~iwd 348 (448)
.+.-.++|.++.|+|+++.++++. .-..+.|+|++ +.++..+ ..++-.++-|+|.|++|+.++- -|.+.|||
T Consensus 266 ~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwD 342 (566)
T KOG2315|consen 266 PLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWD 342 (566)
T ss_pred ecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEe
Confidence 667789999999999998887654 55689999976 5566555 3566678999999999888765 47899999
Q ss_pred ccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeC------CCeEEEEECCCCceeeeeecCcCceEEEEEccC
Q 013184 349 VRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEP------ADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPD 416 (448)
Q Consensus 349 ~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~------d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspd 416 (448)
+.+ .+++..+..... +-+.|+|||++++++.. |+.++||+. +|..+... ....+...+.|-|-
T Consensus 343 v~n-~K~i~~~~a~~t--t~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy-tG~~l~~~-~f~sEL~qv~W~P~ 411 (566)
T KOG2315|consen 343 VPN-RKLIAKFKAANT--TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY-TGSLLHEK-MFKSELLQVEWRPF 411 (566)
T ss_pred ccc-hhhccccccCCc--eEEEEcCCCcEEEEEeccccEEecCCeEEEEe-cCceeehh-hhhHhHhheeeeec
Confidence 987 788877776544 44799999999999875 567999995 55554321 12226788888874
No 259
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.24 E-value=7.7e-09 Score=97.10 Aligned_cols=222 Identities=14% Similarity=0.158 Sum_probs=153.7
Q ss_pred eCCCCeEEEecCCeEEEEecCCCceeEEEecCCCCCCCC-----CCCCCcccCCcceeeEEEEe-cCCEEEEEeCCCeEE
Q 013184 141 STSKHDVYLMSHFSIVHWSSLSSKRTEVLDVSGHVAPCE-----KHPGNLLEGFTQTQVSTLAV-RDNLLIAGGFQGELI 214 (448)
Q Consensus 141 ~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~gh~~p~~-----~~~~~~~~~~~~~~i~~l~~-~~~~lvsg~~dg~i~ 214 (448)
.+.+..+.+...+.|.++|+.+.+.+.+- ..=++.... -.|..++ ...+. +|++++..+. |...
T Consensus 275 nsDGkrIvFq~~GdIylydP~td~lekld-I~lpl~rk~k~~k~~~pskyl--------edfa~~~Gd~ia~VSR-GkaF 344 (668)
T COG4946 275 NSDGKRIVFQNAGDIYLYDPETDSLEKLD-IGLPLDRKKKQPKFVNPSKYL--------EDFAVVNGDYIALVSR-GKAF 344 (668)
T ss_pred CCCCcEEEEecCCcEEEeCCCcCcceeee-cCCccccccccccccCHHHhh--------hhhccCCCcEEEEEec-CcEE
Confidence 46677888888899999998876665542 221121111 1111111 12333 7777777765 4444
Q ss_pred EEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCC-cEEEEecCCceEEEEeecCCCeeEEEECCCCCEE
Q 013184 215 CKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDC-GVRDFDMERFQLSKHFSFPWPVNHTSLSPDGKLL 293 (448)
Q Consensus 215 vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg-~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l 293 (448)
+.+...+ ..+...+.+-+....+...+ . -++.|.+|| .+-|+|.++++..+..+.-+.|.++..+|+|+.+
T Consensus 345 i~~~~~~-----~~iqv~~~~~VrY~r~~~~~--e-~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~ 416 (668)
T COG4946 345 IMRPWDG-----YSIQVGKKGGVRYRRIQVDP--E-GDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKV 416 (668)
T ss_pred EECCCCC-----eeEEcCCCCceEEEEEccCC--c-ceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEE
Confidence 4433222 12222344446666663333 3 588899998 8999999999887777778889999999999999
Q ss_pred EEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCC----cEEEEEccCCCcceEEEccCCCCeEEE
Q 013184 294 VIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDK----TCRVWDVRNLSKSVAVLKGNLGAIRSI 369 (448)
Q Consensus 294 ~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~----~i~iwd~~~~~~~~~~~~~~~~~v~~l 369 (448)
+++.....+.++|+.+|.....-+...+-|+..+|||++++||-+--+| .|+++|+.. ++... .+...+.=.+-
T Consensus 417 vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~-~Kiy~-vTT~ta~DfsP 494 (668)
T COG4946 417 VVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG-GKIYD-VTTPTAYDFSP 494 (668)
T ss_pred EEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC-CeEEE-ecCCcccccCc
Confidence 9999999999999999987655555678899999999999999987765 699999974 44433 33344444567
Q ss_pred EEcCCCCEEEEEe
Q 013184 370 RFTSDGNFMAMAE 382 (448)
Q Consensus 370 ~~sp~g~~l~s~~ 382 (448)
+|.|+|++|..-+
T Consensus 495 aFD~d~ryLYfLs 507 (668)
T COG4946 495 AFDPDGRYLYFLS 507 (668)
T ss_pred ccCCCCcEEEEEe
Confidence 8999999886554
No 260
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.18 E-value=4.4e-07 Score=86.02 Aligned_cols=251 Identities=11% Similarity=0.035 Sum_probs=148.7
Q ss_pred CeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEecCCEEEEEeC----------CCeEEEEEcCCCC
Q 013184 153 FSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAVRDNLLIAGGF----------QGELICKYLDQPG 222 (448)
Q Consensus 153 ~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~~~~~lvsg~~----------dg~i~vw~~~~~~ 222 (448)
++|.+.|..+.+....+... ..| +.. ++.+++.|+++.. +..|.+||+.+..
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G--~~P---------------~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~ 88 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGG--FLP---------------NPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL 88 (352)
T ss_pred ceEEEEECCCCEEEEEEEcc--CCC---------------cee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCc
Confidence 57889998776655555432 122 122 6777777666554 8899999998877
Q ss_pred ceeEEEeecCCC--CceeeEEEEeCCCCCeeEEEEeC-CCcEEEEecCCceEEEEeecCCCeeEEEECCCCCEEEEEecC
Q 013184 223 VSFCSRTTYDEN--AITNAVEIYNSPSGGIHFMASNN-DCGVRDFDMERFQLSKHFSFPWPVNHTSLSPDGKLLVIVGDN 299 (448)
Q Consensus 223 ~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~s~-dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d 299 (448)
......+..... .......+..+|+|+.++++--. +..|-+.|+.+++.+..+.-+.+..-...+++... +-+.|
T Consensus 89 ~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~--~~~~D 166 (352)
T TIGR02658 89 PIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFF--MHCRD 166 (352)
T ss_pred EEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccE--EEeec
Confidence 553333321100 01122234449999854444424 79999999999999998886554444443333222 12233
Q ss_pred CcEEEEEC-CCCcee-E---eeecCCCcEEEE-EEcC-CCCEEEEEeCCCcEEEEEccCC----CcceEEEcc-------
Q 013184 300 PEGILVDS-QTGKAI-M---PLCGHLDFSFAS-AWHP-DGRIFATGNQDKTCRVWDVRNL----SKSVAVLKG------- 361 (448)
Q Consensus 300 ~~i~i~d~-~~~~~~-~---~l~~h~~~v~~~-~~~p-~g~~l~s~~~d~~i~iwd~~~~----~~~~~~~~~------- 361 (448)
|......+ .+|+.. . .+.+...+++.= .+.+ +|+++..... |+|.+.|+... ......+..
T Consensus 167 g~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~w 245 (352)
T TIGR02658 167 GSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGW 245 (352)
T ss_pred CceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeecccccccccc
Confidence 33322221 122211 1 111111111111 3455 8888877777 99999996431 122222221
Q ss_pred CCCCeEEEEEcCCCCEEEEEe----------CCCeEEEEECCCCceeeeeecCcCceEEEEEccCCC-eEEEEEe
Q 013184 362 NLGAIRSIRFTSDGNFMAMAE----------PADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTE-ALFIGVW 425 (448)
Q Consensus 362 ~~~~v~~l~~sp~g~~l~s~~----------~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~-~L~~~~~ 425 (448)
..+.+.-++++|+|+.|.++. ..+.|.++|..+++.+..+.- ...+.+++|+|||+ .|++...
T Consensus 246 rP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~ 319 (352)
T TIGR02658 246 RPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALST 319 (352)
T ss_pred CCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCC
Confidence 123344599999999888743 225899999999988877663 45799999999999 8887664
No 261
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.15 E-value=3.2e-10 Score=120.80 Aligned_cols=182 Identities=12% Similarity=0.146 Sum_probs=137.6
Q ss_pred cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee-cC
Q 013184 200 RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS-FP 278 (448)
Q Consensus 200 ~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~ 278 (448)
...+.++|+.||.+++|.+..+....+.+..+. +.+..+ .++..|+ .+..+..||.+.+|.... ++....+ |.
T Consensus 2219 ~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~--s~vtr~--~f~~qGn-k~~i~d~dg~l~l~q~~p-k~~~s~qchn 2292 (2439)
T KOG1064|consen 2219 SDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN--SRVTRS--RFNHQGN-KFGIVDGDGDLSLWQASP-KPYTSWQCHN 2292 (2439)
T ss_pred CCceEEecCCCceEEEEeccCCCeEEEeeccCc--chhhhh--hhcccCC-ceeeeccCCceeecccCC-cceeccccCC
Confidence 456889999999999999999887777776554 333333 3366666 677777899999999873 3333333 77
Q ss_pred CCeeEEEECCCCCEEEEEe---cCCcEEEEECCCC---ceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 013184 279 WPVNHTSLSPDGKLLVIVG---DNPEGILVDSQTG---KAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNL 352 (448)
Q Consensus 279 ~~v~~~~~sp~~~~l~~~~---~d~~i~i~d~~~~---~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~ 352 (448)
.......|-. ..+++++ +++.+.+||.... .+++ ..|...++++++.|..++|++|+.+|.|++||++.
T Consensus 2293 k~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rq- 2367 (2439)
T KOG1064|consen 2293 KALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQ- 2367 (2439)
T ss_pred ccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHH-
Confidence 7777777763 5667664 5788999996432 2344 67999999999999999999999999999999987
Q ss_pred CcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeee
Q 013184 353 SKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEI 402 (448)
Q Consensus 353 ~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~ 402 (448)
.+.++.++. +. ...++++|+..|.|+||++..-..+..+.
T Consensus 2368 rql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2368 RQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred HHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence 566666554 44 45799999999999999998766555443
No 262
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.11 E-value=2.2e-09 Score=95.57 Aligned_cols=233 Identities=16% Similarity=0.272 Sum_probs=153.5
Q ss_pred eeEEEEe--cCCEEEEEeCCCeEEEEEcCCCC---ceeEEEeecCC-----------CCceeeEEEEeCCCCCeeEEEEe
Q 013184 193 QVSTLAV--RDNLLIAGGFQGELICKYLDQPG---VSFCSRTTYDE-----------NAITNAVEIYNSPSGGIHFMASN 256 (448)
Q Consensus 193 ~i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~---~~~~~~~~~~~-----------~~~~~~v~~~~~~~~~~~l~s~s 256 (448)
.|+++.+ .|.+|++|...|.|.++.-.... .++.+.+..+. ...++.+.|+ .+.+...++..+
T Consensus 28 ~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~-~~t~r~hFLlst 106 (460)
T COG5170 28 KITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWF-DDTGRNHFLLST 106 (460)
T ss_pred eeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeee-cCCCcceEEEec
Confidence 5888888 67899999999999998765433 22222222221 1235666664 466666888889
Q ss_pred CCCcEEEEecCCce------------------------------------------EEEEe--ecCCCeeEEEECCCCCE
Q 013184 257 NDCGVRDFDMERFQ------------------------------------------LSKHF--SFPWPVNHTSLSPDGKL 292 (448)
Q Consensus 257 ~dg~v~iwd~~~~~------------------------------------------~~~~~--~~~~~v~~~~~sp~~~~ 292 (448)
+|.+|++|.+.... +.+.. .|+..|++++++.+...
T Consensus 107 NdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et 186 (460)
T COG5170 107 NDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKET 186 (460)
T ss_pred CCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchhe
Confidence 99999999764320 00112 16667889999988776
Q ss_pred EEEEecCCcEEEEECCCCc---eeEeeecCC-----CcEEEEEEcCC-CCEEEEEeCCCcEEEEEccCCCcceE------
Q 013184 293 LVIVGDNPEGILVDSQTGK---AIMPLCGHL-----DFSFASAWHPD-GRIFATGNQDKTCRVWDVRNLSKSVA------ 357 (448)
Q Consensus 293 l~~~~~d~~i~i~d~~~~~---~~~~l~~h~-----~~v~~~~~~p~-g~~l~s~~~d~~i~iwd~~~~~~~~~------ 357 (448)
+++ .++-.|.+|++.... .+..++.|. .-|++..|+|. ...+..++..|.|++-|+|...-|..
T Consensus 187 ~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe 265 (460)
T COG5170 187 LLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFE 265 (460)
T ss_pred eee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhh
Confidence 665 456689999876432 233344443 34778899994 45777788899999999995322211
Q ss_pred ---------EEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCce-eeeeecCc------------Cc---eEEEE
Q 013184 358 ---------VLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFE-KEQEIDFF------------GE---ISGMT 412 (448)
Q Consensus 358 ---------~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~-~~~~~~~~------------~~---v~~~~ 412 (448)
-+.+-...|..+.|+++|+|+++-.. -+|+|||+...+. +.++.-|. .. -.-+.
T Consensus 266 ~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeis 344 (460)
T COG5170 266 LTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEIS 344 (460)
T ss_pred hccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEE
Confidence 11222346889999999999998654 4799999887553 34443332 11 23577
Q ss_pred EccCCCeEEEEEecCC
Q 013184 413 FSPDTEALFIGVWDRT 428 (448)
Q Consensus 413 fspdg~~L~~~~~D~~ 428 (448)
||-|.+.+.+|++...
T Consensus 345 fSgd~~~v~sgsy~NN 360 (460)
T COG5170 345 FSGDDKHVLSGSYSNN 360 (460)
T ss_pred ecCCcccccccccccc
Confidence 8888888888765543
No 263
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=2.5e-08 Score=95.35 Aligned_cols=229 Identities=16% Similarity=0.172 Sum_probs=137.5
Q ss_pred eeeEEEEecCCEEEEEeCC-----------CeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCc
Q 013184 192 TQVSTLAVRDNLLIAGGFQ-----------GELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCG 260 (448)
Q Consensus 192 ~~i~~l~~~~~~lvsg~~d-----------g~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~ 260 (448)
++...+++..++||+-+.. ..|+|||+.++...............-... -+|-++. +++--.. .+
T Consensus 252 Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~f--rWS~DdK-y~Arm~~-~s 327 (698)
T KOG2314|consen 252 VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIF--RWSHDDK-YFARMTG-NS 327 (698)
T ss_pred ceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceE--EeccCCc-eeEEecc-ce
Confidence 3555666688999986632 478999999887654333322222222223 3466665 5554443 57
Q ss_pred EEEEecCCceEEEEee-cCCCeeEEEECCCCCEEEEEecC-----CcEEEEEC----------------------CCCce
Q 013184 261 VRDFDMERFQLSKHFS-FPWPVNHTSLSPDGKLLVIVGDN-----PEGILVDS----------------------QTGKA 312 (448)
Q Consensus 261 v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d-----~~i~i~d~----------------------~~~~~ 312 (448)
|.||+..+..++..-. ....|....|+|.+.+||.-... ..+.+..+ .+|..
T Consensus 328 isIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdy 407 (698)
T KOG2314|consen 328 ISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDY 407 (698)
T ss_pred EEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcE
Confidence 8899887755543333 34567777788877766652210 01111111 11110
Q ss_pred ---------------------eEeee---------cCCCcEEEEEEcCCCCEEEEEeC---CCcEEEEEccC-CCc--ce
Q 013184 313 ---------------------IMPLC---------GHLDFSFASAWHPDGRIFATGNQ---DKTCRVWDVRN-LSK--SV 356 (448)
Q Consensus 313 ---------------------~~~l~---------~h~~~v~~~~~~p~g~~l~s~~~---d~~i~iwd~~~-~~~--~~ 356 (448)
+..+. .-...|...+|-|.|..+++-+. ..++++|-+.. ..+ .+
T Consensus 408 LcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lV 487 (698)
T KOG2314|consen 408 LCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLV 487 (698)
T ss_pred EEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhh
Confidence 00111 12456778899999997776543 35789998873 222 23
Q ss_pred EEEccCCCCeEEEEEcCCCCEEEEEe---CCCeEEEEECCCCceeee-eecCcCceEEEEEccCCCeEEEEEecC
Q 013184 357 AVLKGNLGAIRSIRFTSDGNFMAMAE---PADFVHVYDAKNGFEKEQ-EIDFFGEISGMTFSPDTEALFIGVWDR 427 (448)
Q Consensus 357 ~~~~~~~~~v~~l~~sp~g~~l~s~~---~d~~v~vwd~~~~~~~~~-~~~~~~~v~~~~fspdg~~L~~~~~D~ 427 (448)
..+.. ...+.+.|+|.|+++++|. ..|.+..+|+........ ...|. ..+.+.|.|.|+|+++++.=.
T Consensus 488 k~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~-~at~veWDPtGRYvvT~ss~w 559 (698)
T KOG2314|consen 488 KELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHF-AATEVEWDPTGRYVVTSSSSW 559 (698)
T ss_pred hhhcc--cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCcccc-ccccceECCCCCEEEEeeehh
Confidence 33332 4567899999999998874 467899999874222222 22343 467899999999999987543
No 264
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.06 E-value=4.1e-07 Score=99.27 Aligned_cols=250 Identities=16% Similarity=0.164 Sum_probs=148.7
Q ss_pred eeeeCCCCeEEEe--cCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCccc-CCcceeeEEEEe--cCCEE-EEEeCCC
Q 013184 138 LVWSTSKHDVYLM--SHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLE-GFTQTQVSTLAV--RDNLL-IAGGFQG 211 (448)
Q Consensus 138 l~~~~~~~~v~~~--~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~-~~~~~~i~~l~~--~~~~l-vsg~~dg 211 (448)
+...+..+.+|++ .++.|++|+... .....+...|... ...|.+.. .+. .-..+++ +++.| ++-...+
T Consensus 573 vavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G---~~dG~~~~a~f~--~P~GIavd~~gn~LYVaDt~n~ 646 (1057)
T PLN02919 573 LAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEG---LRDGSFEDATFN--RPQGLAYNAKKNLLYVADTENH 646 (1057)
T ss_pred EEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcC---CCCCchhccccC--CCcEEEEeCCCCEEEEEeCCCc
Confidence 3444456778887 466799999643 3222221111110 00111000 011 1244555 56654 4455567
Q ss_pred eEEEEEcCCCCceeEEEe-------ecCC------CCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee--
Q 013184 212 ELICKYLDQPGVSFCSRT-------TYDE------NAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS-- 276 (448)
Q Consensus 212 ~i~vw~~~~~~~~~~~~~-------~~~~------~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-- 276 (448)
.|+++++.+......... .... -.....+ .++|.++.++++.+.++.|++||..++.......
T Consensus 647 ~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gV--a~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G 724 (1057)
T PLN02919 647 ALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDV--CFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDG 724 (1057)
T ss_pred eEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEE--EEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCC
Confidence 888888766442211100 0000 0012234 4478666677888888999999998765432110
Q ss_pred -------------cCCCeeEEEECCCCCEEE-EEecCCcEEEEECCCCceeEeeec---------------------CCC
Q 013184 277 -------------FPWPVNHTSLSPDGKLLV-IVGDNPEGILVDSQTGKAIMPLCG---------------------HLD 321 (448)
Q Consensus 277 -------------~~~~v~~~~~sp~~~~l~-~~~~d~~i~i~d~~~~~~~~~l~~---------------------h~~ 321 (448)
.-.....++++|+++.|+ +-+.++.|++||+.++.......+ ...
T Consensus 725 ~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~ 804 (1057)
T PLN02919 725 YERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQ 804 (1057)
T ss_pred ccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhcc
Confidence 012356799999998555 445678999999987653211100 011
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEcc--------------CCCCeEEEEEcCCCCEEEEEeCCCeE
Q 013184 322 FSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKG--------------NLGAIRSIRFTSDGNFMAMAEPADFV 387 (448)
Q Consensus 322 ~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--------------~~~~v~~l~~sp~g~~l~s~~~d~~v 387 (448)
....++++|+|+++++-..++.|++||..+ +.. ..+.+ .......++++++|+.+++-+.++.|
T Consensus 805 ~P~Gvavd~dG~LYVADs~N~rIrviD~~t-g~v-~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~I 882 (1057)
T PLN02919 805 HPLGVLCAKDGQIYVADSYNHKIKKLDPAT-KRV-TTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLI 882 (1057)
T ss_pred CCceeeEeCCCcEEEEECCCCEEEEEECCC-CeE-EEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEE
Confidence 235789999999888888899999999864 332 22221 12246789999999988888889999
Q ss_pred EEEECCCCce
Q 013184 388 HVYDAKNGFE 397 (448)
Q Consensus 388 ~vwd~~~~~~ 397 (448)
++||+.++..
T Consensus 883 rvid~~~~~~ 892 (1057)
T PLN02919 883 RYLDLNKGEA 892 (1057)
T ss_pred EEEECCCCcc
Confidence 9999988754
No 265
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.06 E-value=2.5e-06 Score=78.26 Aligned_cols=217 Identities=14% Similarity=0.185 Sum_probs=137.8
Q ss_pred EEEecCCEEEEEeC-CCeEEEEEcCCCCceeEE-EeecCCCC---------ceeeEEEEeCCCCCeeEEEEeCCCcEEEE
Q 013184 196 TLAVRDNLLIAGGF-QGELICKYLDQPGVSFCS-RTTYDENA---------ITNAVEIYNSPSGGIHFMASNNDCGVRDF 264 (448)
Q Consensus 196 ~l~~~~~~lvsg~~-dg~i~vw~~~~~~~~~~~-~~~~~~~~---------~~~~v~~~~~~~~~~~l~s~s~dg~v~iw 264 (448)
++.-++++|+++.. .|.|.++-+...+..... ....+... .+.... +.|++..+++..-.--.|.+|
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~--~tP~~~~l~v~DLG~Dri~~y 172 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSAN--FTPDGRYLVVPDLGTDRIFLY 172 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceee--eCCCCCEEEEeecCCceEEEE
Confidence 34447888888764 589999999775532221 22222211 133333 388887444443334579999
Q ss_pred ecCCceEEEEe----ecCCCeeEEEECCCCCEEEEEec-CCcEEEEECCCC-ceeEeeec---------CCCcEEEEEEc
Q 013184 265 DMERFQLSKHF----SFPWPVNHTSLSPDGKLLVIVGD-NPEGILVDSQTG-KAIMPLCG---------HLDFSFASAWH 329 (448)
Q Consensus 265 d~~~~~~~~~~----~~~~~v~~~~~sp~~~~l~~~~~-d~~i~i~d~~~~-~~~~~l~~---------h~~~v~~~~~~ 329 (448)
++..+++...- +.....+.+.|+|++++..+.++ +++|.+|..... ..+..++. ......++..+
T Consensus 173 ~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis 252 (346)
T COG2706 173 DLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHIS 252 (346)
T ss_pred EcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEEC
Confidence 99987755433 34566899999999999988774 789999987663 22222221 23456788999
Q ss_pred CCCCEEEEEeC-CCcEEEEEccCCCcceEEE---ccCCCCeEEEEEcCCCCEEEEEeCC-CeEEEEECC--CCceeeeee
Q 013184 330 PDGRIFATGNQ-DKTCRVWDVRNLSKSVAVL---KGNLGAIRSIRFTSDGNFMAMAEPA-DFVHVYDAK--NGFEKEQEI 402 (448)
Q Consensus 330 p~g~~l~s~~~-d~~i~iwd~~~~~~~~~~~---~~~~~~v~~l~~sp~g~~l~s~~~d-~~v~vwd~~--~~~~~~~~~ 402 (448)
|+|++|.+++. ...|-++.+...+..+... ..+....+...|+|.|++|+++..+ +.|.+|.+. +|.......
T Consensus 253 ~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~ 332 (346)
T COG2706 253 PDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGR 332 (346)
T ss_pred CCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEeccc
Confidence 99999998865 3468888886644433322 2233446899999999999999865 468888654 444332222
Q ss_pred -cCcCceEEEEEc
Q 013184 403 -DFFGEISGMTFS 414 (448)
Q Consensus 403 -~~~~~v~~~~fs 414 (448)
.......+|.|.
T Consensus 333 ~~~~p~Pvcv~f~ 345 (346)
T COG2706 333 YAVVPEPVCVKFL 345 (346)
T ss_pred ccCCCCcEEEEEc
Confidence 233455666664
No 266
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.05 E-value=8.1e-10 Score=117.86 Aligned_cols=179 Identities=15% Similarity=0.154 Sum_probs=141.9
Q ss_pred eeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee--cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEe
Q 013184 238 NAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS--FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMP 315 (448)
Q Consensus 238 ~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~ 315 (448)
+..++..+|... +.++|+.||.|++|....++.+..+. .+..|+.+.|+.+|+.+.++..||.+.+|.+. .++...
T Consensus 2210 ~v~r~~sHp~~~-~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s 2287 (2439)
T KOG1064|consen 2210 NVRRMTSHPSDP-YYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTS 2287 (2439)
T ss_pred ceeeecCCCCCc-eEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Ccceec
Confidence 344555567665 78999999999999998888887777 45788999999999999999999999999876 667777
Q ss_pred eecCCCcEEEEEEcCCCCEEEEEe---CCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 013184 316 LCGHLDFSFASAWHPDGRIFATGN---QDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDA 392 (448)
Q Consensus 316 l~~h~~~v~~~~~~p~g~~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~ 392 (448)
.+.|......+.|-. ..+++++ .++.+.+||.......-.+-+.|.+.++++++-|..+.|++|+.+|.|++||+
T Consensus 2288 ~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~ 2365 (2439)
T KOG1064|consen 2288 WQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDI 2365 (2439)
T ss_pred cccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeeh
Confidence 888988888888864 6677765 46789999986544333333889999999999999999999999999999999
Q ss_pred CCCceeeeeecCcCceEEEEEccCCCeEEEEEecCCcc
Q 013184 393 KNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDRTYG 430 (448)
Q Consensus 393 ~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~~~ 430 (448)
+..+.+..+.. +. ...++++|+..|.++
T Consensus 2366 rqrql~h~~~~---------~~-~~~~f~~~ss~g~ik 2393 (2439)
T KOG1064|consen 2366 RQRQLRHTFQA---------LD-TREYFVTGSSEGNIK 2393 (2439)
T ss_pred HHHHHHHHhhh---------hh-hhheeeccCcccceE
Confidence 88666554443 33 456777777766544
No 267
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.05 E-value=4.6e-07 Score=89.25 Aligned_cols=202 Identities=13% Similarity=0.089 Sum_probs=124.0
Q ss_pred EecCCE-EEEEeCC---CeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCC--CcEEEEecCCceE
Q 013184 198 AVRDNL-LIAGGFQ---GELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNND--CGVRDFDMERFQL 271 (448)
Q Consensus 198 ~~~~~~-lvsg~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d--g~v~iwd~~~~~~ 271 (448)
+.+++. ++..+.. ..|.++++.+..... +.. ..+...... ++|+|..++++.+.+ ..|.++++.+++.
T Consensus 196 SpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~---lt~-~~g~~~~~~--~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~ 269 (419)
T PRK04043 196 ANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK---IAS-SQGMLVVSD--VSKDGSKLLLTMAPKGQPDIYLYDTNTKTL 269 (419)
T ss_pred CCCCCcEEEEEEccCCCCEEEEEECCCCcEEE---Eec-CCCcEEeeE--ECCCCCEEEEEEccCCCcEEEEEECCCCcE
Confidence 337763 5544443 467788886655322 221 233333344 499998777776655 4577778888876
Q ss_pred EEEeecCCCeeEEEECCCCCEEEEEecC---CcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCC-------
Q 013184 272 SKHFSFPWPVNHTSLSPDGKLLVIVGDN---PEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQD------- 341 (448)
Q Consensus 272 ~~~~~~~~~v~~~~~sp~~~~l~~~~~d---~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d------- 341 (448)
.+...+........|+|||+.|+..+.. ..|.++|+.+++..+.... ... ...|+|+|++|+.....
T Consensus 270 ~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~--~~~~SPDG~~Ia~~~~~~~~~~~~ 346 (419)
T PRK04043 270 TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN--NSSVSTYKNYIVYSSRETNNEFGK 346 (419)
T ss_pred EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc--CceECCCCCEEEEEEcCCCcccCC
Confidence 5554454434567899999988887643 2688889888776443321 112 24899999988877654
Q ss_pred --CcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCC---eEEEEECCCCceeeeeecCcCceEEEE
Q 013184 342 --KTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPAD---FVHVYDAKNGFEKEQEIDFFGEISGMT 412 (448)
Q Consensus 342 --~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~---~v~vwd~~~~~~~~~~~~~~~~v~~~~ 412 (448)
..|.+.|+.. .....+... +......|+|||+.|+.....+ .+.+.++.. .....+....+.+...+
T Consensus 347 ~~~~I~v~d~~~--g~~~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g-~~~~~l~~~~g~~~~p~ 418 (419)
T PRK04043 347 NTFNLYLISTNS--DYIRRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY-NKSFLFPLKVGKIQSID 418 (419)
T ss_pred CCcEEEEEECCC--CCeEECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC-CeeEEeecCCCccCCCC
Confidence 2567777754 334455543 2334689999999888776432 467777654 33444444445554443
No 268
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.04 E-value=1.3e-07 Score=103.20 Aligned_cols=223 Identities=10% Similarity=0.120 Sum_probs=139.4
Q ss_pred cCCEEEEEeCCCeEEEEEcCCCCceeEEEeec-CCC------------CceeeEEEEeCCCCCeeEEEEeCCCcEEEEec
Q 013184 200 RDNLLIAGGFQGELICKYLDQPGVSFCSRTTY-DEN------------AITNAVEIYNSPSGGIHFMASNNDCGVRDFDM 266 (448)
Q Consensus 200 ~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~-~~~------------~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~ 266 (448)
+++++++-+..+.|.+++..... . ..+.. ... .....+.+ .++++.++++-...+.|+++|+
T Consensus 579 ~g~lyVaDs~n~rI~v~d~~G~~-i--~~ig~~g~~G~~dG~~~~a~f~~P~GIav--d~~gn~LYVaDt~n~~Ir~id~ 653 (1057)
T PLN02919 579 NNRLFISDSNHNRIVVTDLDGNF-I--VQIGSTGEEGLRDGSFEDATFNRPQGLAY--NAKKNLLYVADTENHALREIDF 653 (1057)
T ss_pred CCeEEEEECCCCeEEEEeCCCCE-E--EEEccCCCcCCCCCchhccccCCCcEEEE--eCCCCEEEEEeCCCceEEEEec
Confidence 46688888889999999975432 1 11111 110 11234444 6666645555555678999998
Q ss_pred CCceEEEEeec-----------------CCCeeEEEECC-CCCEEEEEecCCcEEEEECCCCceeEeeecC---------
Q 013184 267 ERFQLSKHFSF-----------------PWPVNHTSLSP-DGKLLVIVGDNPEGILVDSQTGKAIMPLCGH--------- 319 (448)
Q Consensus 267 ~~~~~~~~~~~-----------------~~~v~~~~~sp-~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h--------- 319 (448)
.++........ -.....++++| ++.++++...++.|++||..++... .+.+.
T Consensus 654 ~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~ 732 (1057)
T PLN02919 654 VNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGS 732 (1057)
T ss_pred CCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCC
Confidence 87654322110 11245789999 5666666678889999998876542 22111
Q ss_pred ------CCcEEEEEEcCCCCEE-EEEeCCCcEEEEEccCCCcceEE------------Ecc--------CCCCeEEEEEc
Q 013184 320 ------LDFSFASAWHPDGRIF-ATGNQDKTCRVWDVRNLSKSVAV------------LKG--------NLGAIRSIRFT 372 (448)
Q Consensus 320 ------~~~v~~~~~~p~g~~l-~s~~~d~~i~iwd~~~~~~~~~~------------~~~--------~~~~v~~l~~s 372 (448)
......++++|+|..| ++-+.++.|++||+.+....+.. +.. .......++++
T Consensus 733 ~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd 812 (1057)
T PLN02919 733 SGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCA 812 (1057)
T ss_pred ccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEe
Confidence 1234579999999854 45556789999998753211110 000 01124588999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCceeeeee-------------cCcCceEEEEEccCCCeEEEEEecCC
Q 013184 373 SDGNFMAMAEPADFVHVYDAKNGFEKEQEI-------------DFFGEISGMTFSPDTEALFIGVWDRT 428 (448)
Q Consensus 373 p~g~~l~s~~~d~~v~vwd~~~~~~~~~~~-------------~~~~~v~~~~fspdg~~L~~~~~D~~ 428 (448)
++|..+++-..++.|++||..++....... .....+.+|+++++|+.+++-..+.+
T Consensus 813 ~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~ 881 (1057)
T PLN02919 813 KDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSL 881 (1057)
T ss_pred CCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCE
Confidence 999988888889999999988765442211 12236889999999986665554443
No 269
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.04 E-value=2.3e-07 Score=90.90 Aligned_cols=254 Identities=12% Similarity=0.066 Sum_probs=154.4
Q ss_pred CCeEEEe-cCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEecCCEEEEEeCCCeEEEEEcCCCC
Q 013184 144 KHDVYLM-SHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAVRDNLLIAGGFQGELICKYLDQPG 222 (448)
Q Consensus 144 ~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~~~~~lvsg~~dg~i~vw~~~~~~ 222 (448)
...+|+. .++.+..+|..+++..-...+.+. ...+....++.++.++.+|.|..++..+++
T Consensus 105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~------------------~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~ 166 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDAEDGKELWRAKLSSE------------------VLSPPLVANGLVVVRTNDGRLTALDAATGE 166 (377)
T ss_pred CCEEEEEcCCCEEEEEECCCCcEeeeeccCce------------------eecCCEEECCEEEEECCCCeEEEEEcCCCc
Confidence 4556665 466788898777655433332211 011222346677888889999999998776
Q ss_pred ceeEEEeecCCCC--ceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEeecCCC--------eeEEEECC--CC
Q 013184 223 VSFCSRTTYDENA--ITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFSFPWP--------VNHTSLSP--DG 290 (448)
Q Consensus 223 ~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~--------v~~~~~sp--~~ 290 (448)
............. ......+ .+ . .++.+..++.+..+|+++++.+.......+ +..+.-+| .+
T Consensus 167 ~~W~~~~~~~~~~~~~~~sp~~---~~-~-~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~ 241 (377)
T TIGR03300 167 RLWTYSRVTPALTLRGSASPVI---AD-G-GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDG 241 (377)
T ss_pred eeeEEccCCCceeecCCCCCEE---EC-C-EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEEC
Confidence 5433222111000 0001111 12 2 577788889999999999987765442111 00111122 35
Q ss_pred CEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCC-CCeEEE
Q 013184 291 KLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNL-GAIRSI 369 (448)
Q Consensus 291 ~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~~v~~l 369 (448)
..+++++.++.+..+|..+|+.+..... .. ..... ..+..++.++.+|.+..+|..+ ++.+-...... ....+.
T Consensus 242 ~~vy~~~~~g~l~a~d~~tG~~~W~~~~-~~-~~~p~--~~~~~vyv~~~~G~l~~~d~~t-G~~~W~~~~~~~~~~ssp 316 (377)
T TIGR03300 242 GQVYAVSYQGRVAALDLRSGRVLWKRDA-SS-YQGPA--VDDNRLYVTDADGVVVALDRRS-GSELWKNDELKYRQLTAP 316 (377)
T ss_pred CEEEEEEcCCEEEEEECCCCcEEEeecc-CC-ccCce--EeCCEEEEECCCCeEEEEECCC-CcEEEccccccCCccccC
Confidence 6788888899999999999988766542 11 11122 2466788888999999999976 55543332111 112222
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCc-eEEEEEccCCCeEEEEEecCCc
Q 013184 370 RFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGE-ISGMTFSPDTEALFIGVWDRTY 429 (448)
Q Consensus 370 ~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~-v~~~~fspdg~~L~~~~~D~~~ 429 (448)
.. .+..|++++.+|.|+++|..+|+.+.....+... ..+.++. + +.|++++.||.+
T Consensus 317 ~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~-~~l~v~~~dG~l 373 (377)
T TIGR03300 317 AV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVV-G-DGLLVQTRDGDL 373 (377)
T ss_pred EE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEE-C-CEEEEEeCCceE
Confidence 22 4678899999999999999999988777655433 2333333 3 458888888654
No 270
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.03 E-value=9.2e-09 Score=94.86 Aligned_cols=158 Identities=11% Similarity=0.114 Sum_probs=105.6
Q ss_pred cCCEEEEEeCCCeEEEEEcCCCCc-eeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEeecC
Q 013184 200 RDNLLIAGGFQGELICKYLDQPGV-SFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFSFP 278 (448)
Q Consensus 200 ~~~~lvsg~~dg~i~vw~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~ 278 (448)
.+++|+++..+....++++..... ......... .....++.+............++....+.+|....+.+...+.|-
T Consensus 73 ~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~lGhv 151 (390)
T KOG3914|consen 73 SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEPILGHV 151 (390)
T ss_pred CceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeecccccCcchhhhhh
Confidence 566777777777766666654432 111111111 111223333222111112223445556667776667777778899
Q ss_pred CCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEee-ecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceE
Q 013184 279 WPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPL-CGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVA 357 (448)
Q Consensus 279 ~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l-~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~ 357 (448)
..+..++|+||++.|+++..|..|++-.......+..+ -||...|..++.-++ ..|++|+.|+++++||+++ ++++.
T Consensus 152 Sml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~s-gk~L~ 229 (390)
T KOG3914|consen 152 SMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITS-GKLLD 229 (390)
T ss_pred hhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEeccc-CCccc
Confidence 99999999999999999999999999776655555554 379999999998764 5699999999999999988 66665
Q ss_pred EEc
Q 013184 358 VLK 360 (448)
Q Consensus 358 ~~~ 360 (448)
++.
T Consensus 230 t~d 232 (390)
T KOG3914|consen 230 TCD 232 (390)
T ss_pred ccc
Confidence 554
No 271
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.03 E-value=7.8e-08 Score=92.33 Aligned_cols=213 Identities=19% Similarity=0.205 Sum_probs=136.2
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEE------EeCCCcEEEEecCCceEEEE
Q 013184 201 DNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMA------SNNDCGVRDFDMERFQLSKH 274 (448)
Q Consensus 201 ~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s------~s~dg~v~iwd~~~~~~~~~ 274 (448)
...|++--..+.+.++++....... ..+ +...+....+ +|.+....++ .+.=+.|+||...-......
T Consensus 136 dEsl~arlv~nev~f~~~~~f~~~~-~kl---~~~~i~~f~l--Spgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~ 209 (566)
T KOG2315|consen 136 DESLAARLVSNEVQFYDLGSFKTIQ-HKL---SVSGITMLSL--SPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQP 209 (566)
T ss_pred chhhhhhhhcceEEEEecCCcccee-eee---eccceeeEEe--cCCCCCceEEEEccCCCCCCcEEEEeccccccccch
Confidence 3445555556788888887643211 111 1222334444 6664333332 24456799998762221111
Q ss_pred e---e-cCCCeeEEEECCCCCEEE-EEec-----------CCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEE-
Q 013184 275 F---S-FPWPVNHTSLSPDGKLLV-IVGD-----------NPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFAT- 337 (448)
Q Consensus 275 ~---~-~~~~v~~~~~sp~~~~l~-~~~~-----------d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s- 337 (448)
+ . +...=..+.|++-|.-|+ .++. ..++++++++...+...+. ..++|.++.|+|+|+-|++
T Consensus 210 ~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~Vv 288 (566)
T KOG2315|consen 210 VANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVV 288 (566)
T ss_pred hhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEE
Confidence 1 1 223334677888665333 3221 2367777777444444443 5789999999999986655
Q ss_pred -EeCCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEECCCCceeeeeecCcCceEEEEE
Q 013184 338 -GNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPA---DFVHVYDAKNGFEKEQEIDFFGEISGMTF 413 (448)
Q Consensus 338 -~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d---~~v~vwd~~~~~~~~~~~~~~~~v~~~~f 413 (448)
|-+--.+.|+|++ +.++..+ ..++-+++-|+|.|++|+.|+.+ |.|-|||+.+.+++..+... .-+-+.|
T Consensus 289 yGfMPAkvtifnlr--~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~--~tt~~eW 362 (566)
T KOG2315|consen 289 YGFMPAKVTIFNLR--GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA--NTTVFEW 362 (566)
T ss_pred EecccceEEEEcCC--CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccC--CceEEEE
Confidence 4566789999997 5666555 46778899999999999999875 68999999997766655543 3456789
Q ss_pred ccCCCeEEEEEec
Q 013184 414 SPDTEALFIGVWD 426 (448)
Q Consensus 414 spdg~~L~~~~~D 426 (448)
+|||++++++..-
T Consensus 363 ~PdGe~flTATTa 375 (566)
T KOG2315|consen 363 SPDGEYFLTATTA 375 (566)
T ss_pred cCCCcEEEEEecc
Confidence 9999999999654
No 272
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.03 E-value=2.4e-07 Score=99.29 Aligned_cols=199 Identities=20% Similarity=0.236 Sum_probs=135.9
Q ss_pred eEEEEeCCCCCeeEEEEeCCCcEEEE----ecCCceEEEEeecCCCeeEEEECCCCCEEEEEecCCcEEEEECC------
Q 013184 239 AVEIYNSPSGGIHFMASNNDCGVRDF----DMERFQLSKHFSFPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQ------ 308 (448)
Q Consensus 239 ~v~~~~~~~~~~~l~s~s~dg~v~iw----d~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~------ 308 (448)
.+.+.+.++.. .++.+..+|.|.+. +.....+...-.....|.+++||||+.+|+.++.++++.+....
T Consensus 78 ivs~~yl~d~~-~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E 156 (928)
T PF04762_consen 78 IVSFQYLADSE-SLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISE 156 (928)
T ss_pred EEEEEeccCCC-cEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEE
Confidence 34444456654 67778888999999 66655544444467889999999999999999999888776431
Q ss_pred ---------C--------CceeEeeec------------------------CCCcEEEEEEcCCCCEEEEEeC---C---
Q 013184 309 ---------T--------GKAIMPLCG------------------------HLDFSFASAWHPDGRIFATGNQ---D--- 341 (448)
Q Consensus 309 ---------~--------~~~~~~l~~------------------------h~~~v~~~~~~p~g~~l~s~~~---d--- 341 (448)
. |+.-.+|.| +.+.-..++|..||.+||+.+- .
T Consensus 157 ~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~ 236 (928)
T PF04762_consen 157 VPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSR 236 (928)
T ss_pred eecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCce
Confidence 0 011011111 2234457899999999999874 2
Q ss_pred CcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeC---CCeEEEEECCCCceeeeeec----CcCceEEEEEc
Q 013184 342 KTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEP---ADFVHVYDAKNGFEKEQEID----FFGEISGMTFS 414 (448)
Q Consensus 342 ~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~---d~~v~vwd~~~~~~~~~~~~----~~~~v~~~~fs 414 (448)
+.+|||+-. +....+...-.+--.+++|.|.|.+||+.-. ...|.+|. ++|.....+.- ....|..++|+
T Consensus 237 R~iRVy~Re--G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn 313 (928)
T PF04762_consen 237 RVIRVYSRE--GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWN 313 (928)
T ss_pred eEEEEECCC--ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEEC
Confidence 579999874 4444444433344457899999999998764 34688888 66655544332 34579999999
Q ss_pred cCCCeEEEEEecCCcceEEEEecccce-Eeccc
Q 013184 415 PDTEALFIGVWDRTYGSLLQYNRCRNY-TYLDT 446 (448)
Q Consensus 415 pdg~~L~~~~~D~~~~~ll~~~~~~~~-~~l~~ 446 (448)
+|+..|++-..|. ++++...+| .||+.
T Consensus 314 ~ds~iLAv~~~~~-----vqLWt~~NYHWYLKq 341 (928)
T PF04762_consen 314 SDSEILAVWLEDR-----VQLWTRSNYHWYLKQ 341 (928)
T ss_pred CCCCEEEEEecCC-----ceEEEeeCCEEEEEE
Confidence 9999999988665 555555554 57753
No 273
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.01 E-value=1.1e-06 Score=83.36 Aligned_cols=263 Identities=14% Similarity=0.062 Sum_probs=155.7
Q ss_pred CcceeeecccCCCCCcccccccceeeeCCCCeEEEecC-----------CeEEEEecCCCceeEEEecCCCCCCCCCCCC
Q 013184 115 KYYEFWRNTRSVKSTILHFQLRNLVWSTSKHDVYLMSH-----------FSIVHWSSLSSKRTEVLDVSGHVAPCEKHPG 183 (448)
Q Consensus 115 ~~~~f~~~~~~~~~~~~hfq~r~l~~~~~~~~v~~~~~-----------~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~ 183 (448)
..+-+......+.-.+.--+..+.+.++++..+|.+.. ..|.+||+.+.+...-+.+.+ .|.
T Consensus 28 ~v~ViD~~~~~v~g~i~~G~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~--~p~----- 100 (352)
T TIGR02658 28 QVYTIDGEAGRVLGMTDGGFLPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPE--GPR----- 100 (352)
T ss_pred eEEEEECCCCEEEEEEEccCCCceeECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCC--Cch-----
Confidence 33444444444444443333333457788888888755 569999998866555554421 110
Q ss_pred CcccCCcceeeEEEEecCCEEEEEeC--CCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcE
Q 013184 184 NLLEGFTQTQVSTLAVRDNLLIAGGF--QGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGV 261 (448)
Q Consensus 184 ~~~~~~~~~~i~~l~~~~~~lvsg~~--dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v 261 (448)
...........++.+|++|++... +..|.+.|+.+.+....... . .+..++..+... +.+-+.||..
T Consensus 101 --~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v--p-----~~~~vy~t~e~~--~~~~~~Dg~~ 169 (352)
T TIGR02658 101 --FLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV--P-----DCYHIFPTANDT--FFMHCRDGSL 169 (352)
T ss_pred --hhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC--C-----CCcEEEEecCCc--cEEEeecCce
Confidence 000111235667779998887763 68999999988775533332 1 122222222222 2223345555
Q ss_pred EEEecCC-ceEE-EEee--c-------CCCeeEEEECC-CCCEEEEEecCCcEEEEECCCC-----ceeEeeec------
Q 013184 262 RDFDMER-FQLS-KHFS--F-------PWPVNHTSLSP-DGKLLVIVGDNPEGILVDSQTG-----KAIMPLCG------ 318 (448)
Q Consensus 262 ~iwd~~~-~~~~-~~~~--~-------~~~v~~~~~sp-~~~~l~~~~~d~~i~i~d~~~~-----~~~~~l~~------ 318 (448)
....+.. ++.. .... + ..+ .+.+ +|+++.+... |.|.+.|+... +.+..+..
T Consensus 170 ~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~ 244 (352)
T TIGR02658 170 AKVGYGTKGNPKIKPTEVFHPEDEYLINHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADG 244 (352)
T ss_pred EEEEecCCCceEEeeeeeecCCccccccCC----ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccc
Confidence 4433322 2211 1111 1 222 3455 7887777766 99999995433 33322211
Q ss_pred -CCCcEEEEEEcCCCCEEEEEeC----------CCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCC-EEEEEe-CCC
Q 013184 319 -HLDFSFASAWHPDGRIFATGNQ----------DKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGN-FMAMAE-PAD 385 (448)
Q Consensus 319 -h~~~v~~~~~~p~g~~l~s~~~----------d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~-~l~s~~-~d~ 385 (448)
..+.+..++++|+++.++.... .+.|.++|..+ .+.+..+.. ...+..++++|||+ +|++.. .++
T Consensus 245 wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t-~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~ 322 (352)
T TIGR02658 245 WRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT-GKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDK 322 (352)
T ss_pred cCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCC-CeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCC
Confidence 2344455999999998887431 24799999976 666666653 34688999999999 777666 578
Q ss_pred eEEEEECCCCceeeeee
Q 013184 386 FVHVYDAKNGFEKEQEI 402 (448)
Q Consensus 386 ~v~vwd~~~~~~~~~~~ 402 (448)
.|.|+|+.+++.+..+.
T Consensus 323 ~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 323 TLYIFDAETGKELSSVN 339 (352)
T ss_pred cEEEEECcCCeEEeeec
Confidence 89999999998887763
No 274
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.00 E-value=2e-06 Score=78.84 Aligned_cols=212 Identities=18% Similarity=0.229 Sum_probs=139.5
Q ss_pred cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEeec--
Q 013184 200 RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFSF-- 277 (448)
Q Consensus 200 ~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~-- 277 (448)
++.++++--..|.|..|+........ .... . ...+.+. .+++ .++.+... .+.++|+.+++.......
T Consensus 11 ~g~l~~~D~~~~~i~~~~~~~~~~~~---~~~~--~-~~G~~~~-~~~g--~l~v~~~~-~~~~~d~~~g~~~~~~~~~~ 80 (246)
T PF08450_consen 11 DGRLYWVDIPGGRIYRVDPDTGEVEV---IDLP--G-PNGMAFD-RPDG--RLYVADSG-GIAVVDPDTGKVTVLADLPD 80 (246)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEEE---EESS--S-EEEEEEE-CTTS--EEEEEETT-CEEEEETTTTEEEEEEEEET
T ss_pred CCEEEEEEcCCCEEEEEECCCCeEEE---EecC--C-CceEEEE-ccCC--EEEEEEcC-ceEEEecCCCcEEEEeeccC
Confidence 46677777788999999887654321 1111 1 3444441 2454 45555554 456669998876555542
Q ss_pred ----CCCeeEEEECCCCCEEEEEecC--------CcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEE-EEeCCCcE
Q 013184 278 ----PWPVNHTSLSPDGKLLVIVGDN--------PEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFA-TGNQDKTC 344 (448)
Q Consensus 278 ----~~~v~~~~~sp~~~~l~~~~~d--------~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~-s~~~d~~i 344 (448)
....+.+++.|+|++.++.... +.+..++.. ++..... ......+.++|+|+++.|+ +-+..+.|
T Consensus 81 ~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~-~~~~~pNGi~~s~dg~~lyv~ds~~~~i 158 (246)
T PF08450_consen 81 GGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA-DGLGFPNGIAFSPDGKTLYVADSFNGRI 158 (246)
T ss_dssp TCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE-EEESSEEEEEEETTSSEEEEEETTTTEE
T ss_pred CCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEe-cCcccccceEECCcchheeeccccccee
Confidence 2457899999999977766533 457777776 5543333 3456678999999999766 55667789
Q ss_pred EEEEccCCCcce---E---EEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEE-ccCC
Q 013184 345 RVWDVRNLSKSV---A---VLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTF-SPDT 417 (448)
Q Consensus 345 ~iwd~~~~~~~~---~---~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~f-spdg 417 (448)
..+++......+ . .+....+..-.+++..+|++.++.-..+.|.+++.. |+.+..+......+++++| -|+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~ 237 (246)
T PF08450_consen 159 WRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDG 237 (246)
T ss_dssp EEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTS
T ss_pred EEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCC
Confidence 999986433311 1 222222347789999999988887788999999966 8877766655468999999 4788
Q ss_pred CeEEEEE
Q 013184 418 EALFIGV 424 (448)
Q Consensus 418 ~~L~~~~ 424 (448)
+.|++.+
T Consensus 238 ~~L~vTt 244 (246)
T PF08450_consen 238 KTLYVTT 244 (246)
T ss_dssp SEEEEEE
T ss_pred CEEEEEe
Confidence 8888765
No 275
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.98 E-value=3.6e-08 Score=89.14 Aligned_cols=220 Identities=16% Similarity=0.189 Sum_probs=138.3
Q ss_pred eeeEEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCC-----CCceeeEEEEeCCCCCeeEEEEeCCCcEEEE
Q 013184 192 TQVSTLAV--RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDE-----NAITNAVEIYNSPSGGIHFMASNNDCGVRDF 264 (448)
Q Consensus 192 ~~i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iw 264 (448)
-.|.++++ +...+++ ..|=.|.+|+++-....+...-...+ ..++++..+ +|.....++-++..|+|++.
T Consensus 165 yhiNSIS~NsD~Et~lS-ADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEF--hp~~cn~f~YSSSKGtIrLc 241 (433)
T KOG1354|consen 165 YHINSISVNSDKETFLS-ADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEF--HPHHCNVFVYSSSKGTIRLC 241 (433)
T ss_pred eEeeeeeecCccceEee-ccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhcc--CHhHccEEEEecCCCcEEEe
Confidence 36888888 4444544 56788999999876655433322222 234556665 77777788888999999999
Q ss_pred ecCCceEE----EEee-------------cCCCeeEEEECCCCCEEEEEecCCcEEEEEC-CCCceeEeeecCC------
Q 013184 265 DMERFQLS----KHFS-------------FPWPVNHTSLSPDGKLLVIVGDNPEGILVDS-QTGKAIMPLCGHL------ 320 (448)
Q Consensus 265 d~~~~~~~----~~~~-------------~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~-~~~~~~~~l~~h~------ 320 (448)
|++...+. +.++ --..|..+.|++.|+++++-..- +|++||+ ...+++.+.+-|.
T Consensus 242 DmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyl-tvk~wD~nme~~pv~t~~vh~~lr~kL 320 (433)
T KOG1354|consen 242 DMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYL-TVKLWDLNMEAKPVETYPVHEYLRSKL 320 (433)
T ss_pred echhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccc-eeEEEeccccCCcceEEeehHhHHHHH
Confidence 99843211 1111 12457889999999999876554 8999998 4455666555443
Q ss_pred ------CcE---EEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCC--eEEEEEcCCCCEEEEEeCCCeEEE
Q 013184 321 ------DFS---FASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGA--IRSIRFTSDGNFMAMAEPADFVHV 389 (448)
Q Consensus 321 ------~~v---~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~--v~~l~~sp~g~~l~s~~~d~~v~v 389 (448)
+.| +.++|+.++.+++||+.....++++...+.+.-.++...... .+.+. .-+.+.+++......+
T Consensus 321 c~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~---k~~~V~~~g~r~~~~~ 397 (433)
T KOG1354|consen 321 CSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVL---KLRLVSSSGKRKRDEI 397 (433)
T ss_pred HHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcceeecccccccCCcccccc---cceeeecCCCcccccc
Confidence 222 468999999999999999999999976544444444433222 22221 1133333333332111
Q ss_pred EECCCCceeeeeecCcCceEEEEEccCCCeEEEEEec
Q 013184 390 YDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWD 426 (448)
Q Consensus 390 wd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D 426 (448)
+- .-......+...+|+|....+|++..+
T Consensus 398 ~v--------d~ldf~kkilh~aWhp~en~ia~aatn 426 (433)
T KOG1354|consen 398 SV--------DALDFRKKILHTAWHPKENSIAVAATN 426 (433)
T ss_pred cc--------chhhhhhHHHhhccCCccceeeeeecC
Confidence 10 111233456678899999999888754
No 276
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.96 E-value=7.8e-07 Score=87.10 Aligned_cols=252 Identities=15% Similarity=0.142 Sum_probs=151.4
Q ss_pred CCeEEEec-CCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEecCCEEEEEeCCCeEEEEEcCCCC
Q 013184 144 KHDVYLMS-HFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAVRDNLLIAGGFQGELICKYLDQPG 222 (448)
Q Consensus 144 ~~~v~~~~-~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~~~~~lvsg~~dg~i~vw~~~~~~ 222 (448)
...+|+.+ ++.|..+|..+++..-..++.+... .+...++..+++++.+|.+..++..+++
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~------------------~~p~v~~~~v~v~~~~g~l~ald~~tG~ 126 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLS------------------GGVGADGGLVFVGTEKGEVIALDAEDGK 126 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcc------------------cceEEcCCEEEEEcCCCEEEEEECCCCc
Confidence 45566664 4578888877765544444443211 2234567888899999999999988776
Q ss_pred ceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEeecCCCeeEEE--ECC--CCCEEEEEec
Q 013184 223 VSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFSFPWPVNHTS--LSP--DGKLLVIVGD 298 (448)
Q Consensus 223 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~--~sp--~~~~l~~~~~ 298 (448)
......+.. .+.....+ .+. .++.++.++.|..||.++++.+..+....+...+. -+| .+..++++..
T Consensus 127 ~~W~~~~~~---~~~~~p~v----~~~-~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~ 198 (377)
T TIGR03300 127 ELWRAKLSS---EVLSPPLV----ANG-LVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFA 198 (377)
T ss_pred EeeeeccCc---eeecCCEE----ECC-EEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECC
Confidence 543322211 11111111 123 56777789999999999999888776433321111 112 2346778888
Q ss_pred CCcEEEEECCCCceeEeeecCCC-------cEEEEEEcC--CCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEE
Q 013184 299 NPEGILVDSQTGKAIMPLCGHLD-------FSFASAWHP--DGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSI 369 (448)
Q Consensus 299 d~~i~i~d~~~~~~~~~l~~h~~-------~v~~~~~~p--~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l 369 (448)
++.+..+|..+|+.+........ ....+.-+| .+..+++++.+|.+..||..+ ++.+-.... .....+
T Consensus 199 ~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~t-G~~~W~~~~--~~~~~p 275 (377)
T TIGR03300 199 GGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRS-GRVLWKRDA--SSYQGP 275 (377)
T ss_pred CCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCC-CcEEEeecc--CCccCc
Confidence 89999999999987654321100 000011111 355788888899999999976 555443331 111222
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcC-ceEEEEEccCCCeEEEEEecCC
Q 013184 370 RFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFG-EISGMTFSPDTEALFIGVWDRT 428 (448)
Q Consensus 370 ~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~-~v~~~~fspdg~~L~~~~~D~~ 428 (448)
. ..+..|++++.+|.|+.+|..+|+.+.......+ ...+... .+..|++++.|+.
T Consensus 276 ~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~ 331 (377)
T TIGR03300 276 A--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGY 331 (377)
T ss_pred e--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCE
Confidence 2 2466788888999999999999987654422211 2222222 3567777766643
No 277
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=4.6e-08 Score=97.65 Aligned_cols=216 Identities=17% Similarity=0.210 Sum_probs=148.2
Q ss_pred ceeeEEEEecCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCce
Q 013184 191 QTQVSTLAVRDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQ 270 (448)
Q Consensus 191 ~~~i~~l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~ 270 (448)
...++|+++.++.|+.|+..|.|++.+....-. ..+ .+... ...|. ++++|+.||+|.|..+-+.+
T Consensus 39 ~D~is~~av~~~~~~~GtH~g~v~~~~~~~~~~---~~~--~~s~~--------~~~Ge-y~asCS~DGkv~I~sl~~~~ 104 (846)
T KOG2066|consen 39 NDAISCCAVHDKFFALGTHRGAVYLTTCQGNPK---TNF--DHSSS--------ILEGE-YVASCSDDGKVVIGSLFTDD 104 (846)
T ss_pred hhHHHHHHhhcceeeeccccceEEEEecCCccc---ccc--ccccc--------ccCCc-eEEEecCCCcEEEeeccCCc
Confidence 346888899999999999999999988754421 111 11111 23454 99999999999999999999
Q ss_pred EEEEeecCCCeeEEEECCC-----CCEEEEEecCCcEEEEECCC-C-ceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCc
Q 013184 271 LSKHFSFPWPVNHTSLSPD-----GKLLVIVGDNPEGILVDSQT-G-KAIMPLCGHLDFSFASAWHPDGRIFATGNQDKT 343 (448)
Q Consensus 271 ~~~~~~~~~~v~~~~~sp~-----~~~l~~~~~d~~i~i~d~~~-~-~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~ 343 (448)
....+.+..++.+++++|+ .+.+++||..| +.++.-+= | +....+..-.++|.++.|. |++||-++.+|
T Consensus 105 ~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G- 180 (846)
T KOG2066|consen 105 EITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG- 180 (846)
T ss_pred cceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-
Confidence 8888999999999999997 67899999888 76665321 1 1111355567899999995 88999999988
Q ss_pred EEEEEccCCCcceEEEccCCCC------eEEEEEcCCCCEEEEEeCCCeEEEEECCCCce--ee----------eeec--
Q 013184 344 CRVWDVRNLSKSVAVLKGNLGA------IRSIRFTSDGNFMAMAEPADFVHVYDAKNGFE--KE----------QEID-- 403 (448)
Q Consensus 344 i~iwd~~~~~~~~~~~~~~~~~------v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~--~~----------~~~~-- 403 (448)
|++||+.. .+.+..++..... ...+.|.++.+ |+. +...+|+|..++.+.. .. .+..
T Consensus 181 v~vyd~~~-~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVI-GW~d~v~i~~I~~~~s~~a~~~~~~~~~~V~~~s~f 257 (846)
T KOG2066|consen 181 VKVYDTPT-RQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVI-GWGDSVKICSIKKRSSSEARSFRLPSLKKVEIVSHF 257 (846)
T ss_pred cEEEeccc-cceeeccCCCCCCCCcccCCCceEecCCCe-EEE-ecCCeEEEEEEecccccccccccCCccceeeeEEEe
Confidence 99999976 5555555443332 24577877654 444 4556799988873210 01 0111
Q ss_pred -CcCceEEEEEccCCCeEEEEEecCCc
Q 013184 404 -FFGEISGMTFSPDTEALFIGVWDRTY 429 (448)
Q Consensus 404 -~~~~v~~~~fspdg~~L~~~~~D~~~ 429 (448)
...-|+++++- |..|++-+.|..+
T Consensus 258 ~~s~~isGla~l--g~qLv~L~f~~~~ 282 (846)
T KOG2066|consen 258 ETSFYISGLAPL--GDQLVVLGFDKDI 282 (846)
T ss_pred eeeeeeeccccc--cceeEEEeeeccc
Confidence 12346666655 6667666666543
No 278
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.96 E-value=1.9e-08 Score=98.74 Aligned_cols=230 Identities=14% Similarity=0.096 Sum_probs=160.6
Q ss_pred eeeEEEEe--cCCEEEEEeCCCeEEEEEcCCCCcee------------EEEeecCCCCceeeEEEEeCCCCCeeEEEEeC
Q 013184 192 TQVSTLAV--RDNLLIAGGFQGELICKYLDQPGVSF------------CSRTTYDENAITNAVEIYNSPSGGIHFMASNN 257 (448)
Q Consensus 192 ~~i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~ 257 (448)
.+..|+++ ..+++++||.||.+++..+.+..... ......+|++.+..+.| +.. ...|.++..
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTW--Ne~-~QKLTtSDt 91 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTW--NEN-NQKLTTSDT 91 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEe--ccc-cccccccCC
Confidence 35778888 77899999999999999887543110 11234567777777777 443 347889999
Q ss_pred CCcEEEEecCCceEEEEee---cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCcee-EeeecCCCcEEEEEEcCCCC
Q 013184 258 DCGVRDFDMERFQLSKHFS---FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAI-MPLCGHLDFSFASAWHPDGR 333 (448)
Q Consensus 258 dg~v~iwd~~~~~~~~~~~---~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~-~~l~~h~~~v~~~~~~p~g~ 333 (448)
+|.|.+|-+-.++.....- ..+-|.+++|+.+|..++.+-.||.|.+=.+...+.. ..+++ .....+.|+||.+
T Consensus 92 ~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ws~D~~ 169 (1189)
T KOG2041|consen 92 SGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVLWSEDLE 169 (1189)
T ss_pred CceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--heccceeecccHH
Confidence 9999999988776443322 4567899999999999999999999987665433321 12332 2234689999999
Q ss_pred EEEEEeCCCcEEEEEccCCC------cceEEE----ccCCCCeEEEEEc--------CCCCEEEEEeCCCeEEEEECCCC
Q 013184 334 IFATGNQDKTCRVWDVRNLS------KSVAVL----KGNLGAIRSIRFT--------SDGNFMAMAEPADFVHVYDAKNG 395 (448)
Q Consensus 334 ~l~s~~~d~~i~iwd~~~~~------~~~~~~----~~~~~~v~~l~~s--------p~g~~l~s~~~d~~v~vwd~~~~ 395 (448)
.++.+-..|.+.+||....- .+.... ......|..+.|. |+...||++-..|.+.|-.-.+.
T Consensus 170 ~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND 249 (1189)
T KOG2041|consen 170 QALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSEND 249 (1189)
T ss_pred HHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCC
Confidence 88888888999999975210 121111 1112235555553 57789999999999888765544
Q ss_pred ceeeeeecCcCceEEEEEccCCCeEEEEEecC
Q 013184 396 FEKEQEIDFFGEISGMTFSPDTEALFIGVWDR 427 (448)
Q Consensus 396 ~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~ 427 (448)
.... +.+..-.|.++.|+|+|..|++++.|.
T Consensus 250 ~~Pv-v~dtgm~~vgakWnh~G~vLAvcG~~~ 280 (1189)
T KOG2041|consen 250 PEPV-VVDTGMKIVGAKWNHNGAVLAVCGNDS 280 (1189)
T ss_pred CCCe-EEecccEeecceecCCCcEEEEccCcc
Confidence 3332 333446799999999999999997764
No 279
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.93 E-value=4.4e-07 Score=86.34 Aligned_cols=203 Identities=10% Similarity=0.076 Sum_probs=136.6
Q ss_pred EeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEe----------CCCcEEEEecCCceEEEEee
Q 013184 207 GGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASN----------NDCGVRDFDMERFQLSKHFS 276 (448)
Q Consensus 207 g~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s----------~dg~v~iwd~~~~~~~~~~~ 276 (448)
++..+.+++|.+..........+.. +..+.+.+.+.|..+++-.- ....++|+++....+.....
T Consensus 198 ~~kpa~~~i~sIp~~s~l~tk~lfk-----~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~ 272 (561)
T COG5354 198 LNKPAMVRILSIPKNSVLVTKNLFK-----VSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKD 272 (561)
T ss_pred CCCCcEEEEEEccCCCeeeeeeeEe-----ecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceecc
Confidence 4567888888887555332222221 23445555777764444321 12457888887554444445
Q ss_pred cCCCeeEEEECCCCCEEEEEe--cCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCC---CcEEEEEccC
Q 013184 277 FPWPVNHTSLSPDGKLLVIVG--DNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQD---KTCRVWDVRN 351 (448)
Q Consensus 277 ~~~~v~~~~~sp~~~~l~~~~--~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d---~~i~iwd~~~ 351 (448)
..++|...+|.|.++.+++.+ ....+.++|++.. ....+ ....=..+.|+|.+++++.++-+ |.+.+||...
T Consensus 273 ~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~--Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~ 349 (561)
T COG5354 273 LKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF--PEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAG 349 (561)
T ss_pred ccccceeeeecccCCceeEEecccccceeecccccc-eEEec--CCcccccccccCcccEEEEecCCccccceEEeccCC
Confidence 688999999999998888766 5668888998765 33333 34444668899999999997654 6799999975
Q ss_pred CCcceEEEccCCCCeEEEEEcCCCCEEEEEe------CCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEe
Q 013184 352 LSKSVAVLKGNLGAIRSIRFTSDGNFMAMAE------PADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVW 425 (448)
Q Consensus 352 ~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~------~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~ 425 (448)
.-.++..+.+.. .+-+.|+|+|+++.++. .|..|.|||+.... .. +.+.+.|.|.|++..+.+.
T Consensus 350 rf~~~~~~~~~n--~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~-~f-------el~~~~W~p~~~~~ttsSs 419 (561)
T COG5354 350 RFKVAGAFNGLN--TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAK-VF-------ELTNITWDPSGQYVTTSSS 419 (561)
T ss_pred ceEEEEEeecCC--ceEeeccCCceEEEecCCCcccccCcceEEEEecCch-hh-------hhhhccccCCcccceeecc
Confidence 334444555443 34568999999998874 36789999976432 21 5667888888888877766
Q ss_pred cC
Q 013184 426 DR 427 (448)
Q Consensus 426 D~ 427 (448)
+.
T Consensus 420 ~~ 421 (561)
T COG5354 420 CP 421 (561)
T ss_pred CC
Confidence 65
No 280
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.92 E-value=8.5e-07 Score=84.40 Aligned_cols=284 Identities=10% Similarity=0.105 Sum_probs=176.1
Q ss_pred cccccceeeeCCCCeEEEecCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEecCCEEEEEeCCC
Q 013184 132 HFQLRNLVWSTSKHDVYLMSHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAVRDNLLIAGGFQG 211 (448)
Q Consensus 132 hfq~r~l~~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~~~~~lvsg~~dg 211 (448)
.|..++..+++-+..+++.....|.+|...... .+..+. |+ .+.-..++..+++|++-+..+
T Consensus 32 ~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~--~l~~~~--------~~--------~V~~~~fSP~~kYL~tw~~~p 93 (561)
T COG5354 32 NWPVAYVSESPLGTYLFSEHAAGVECWGGPSKA--KLVRFR--------HP--------DVKYLDFSPNEKYLVTWSREP 93 (561)
T ss_pred CcchhheeecCcchheehhhccceEEccccchh--heeeee--------cC--------CceecccCcccceeeeeccCC
Confidence 455566678888888888777889999865543 333222 11 112233344778888766554
Q ss_pred e---------------EEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEE-EEe
Q 013184 212 E---------------LICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLS-KHF 275 (448)
Q Consensus 212 ~---------------i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~-~~~ 275 (448)
. +.+||...+.+.+...........-..+.+ +.++. +++-- -...+.|+++ +.... .-+
T Consensus 94 i~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~--s~~D~-y~ARv-v~~sl~i~e~-t~n~~~~p~ 168 (561)
T COG5354 94 IIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKF--SIDDK-YVARV-VGSSLYIHEI-TDNIEEHPF 168 (561)
T ss_pred ccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeee--eecch-hhhhh-ccCeEEEEec-CCccccCch
Confidence 4 889998877654433332222111123444 44443 22211 2346888886 33322 111
Q ss_pred e--cCCCeeEEEECCC--CCEEEE-----EecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEe-------
Q 013184 276 S--FPWPVNHTSLSPD--GKLLVI-----VGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGN------- 339 (448)
Q Consensus 276 ~--~~~~v~~~~~sp~--~~~l~~-----~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~------- 339 (448)
. -...|....|+|. +..|++ .+..+.++||.+..++.+.+-.-....-..+.|++.|.+|+.--
T Consensus 169 ~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksn 248 (561)
T COG5354 169 KNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSN 248 (561)
T ss_pred hhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecc
Confidence 1 2356888889995 344444 34677899999887766554332233335688999998766432
Q ss_pred ----CCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEe--CCCeEEEEECCCCceeeeeecCcCceEEEEE
Q 013184 340 ----QDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAE--PADFVHVYDAKNGFEKEQEIDFFGEISGMTF 413 (448)
Q Consensus 340 ----~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~--~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~f 413 (448)
....+.|++++ ...+.+...-.++|...+|.|.++.+++.+ ..-.+.++|++.. ... ......=..+.|
T Consensus 249 KsyfgesnLyl~~~~--e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~--~~Pe~~rNT~~f 323 (561)
T COG5354 249 KSYFGESNLYLLRIT--ERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRF--YFPEQKRNTIFF 323 (561)
T ss_pred cceeccceEEEEeec--ccccceeccccccceeeeecccCCceeEEecccccceeecccccc-eEE--ecCCcccccccc
Confidence 12468888886 344444445678999999999987665544 5678999998865 332 223344567889
Q ss_pred ccCCCeEEEEEecCCcceEEEEecccceEe
Q 013184 414 SPDTEALFIGVWDRTYGSLLQYNRCRNYTY 443 (448)
Q Consensus 414 spdg~~L~~~~~D~~~~~ll~~~~~~~~~~ 443 (448)
+|.++++++++.|...|.+..+.......+
T Consensus 324 sp~~r~il~agF~nl~gni~i~~~~~rf~~ 353 (561)
T COG5354 324 SPHERYILFAGFDNLQGNIEIFDPAGRFKV 353 (561)
T ss_pred cCcccEEEEecCCccccceEEeccCCceEE
Confidence 999999999999988888888877665544
No 281
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.91 E-value=2.8e-08 Score=91.75 Aligned_cols=152 Identities=16% Similarity=0.228 Sum_probs=107.8
Q ss_pred CCCCCeeEEEEeCCCcEEEEecCC----ceEEEEeecCCCeeEEEECCCCCEEEEEecCC---cEEEEECCCCceeEeee
Q 013184 245 SPSGGIHFMASNNDCGVRDFDMER----FQLSKHFSFPWPVNHTSLSPDGKLLVIVGDNP---EGILVDSQTGKAIMPLC 317 (448)
Q Consensus 245 ~~~~~~~l~s~s~dg~v~iwd~~~----~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~---~i~i~d~~~~~~~~~l~ 317 (448)
++++ .+++++..+....+++... -++...+..+...+.+.+-.+.....++-.-| .+.+|....+.+. .+-
T Consensus 71 s~~~-~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~-~~l 148 (390)
T KOG3914|consen 71 SDSG-RLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCE-PIL 148 (390)
T ss_pred CCCc-eEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcc-hhh
Confidence 4444 4777777777766776543 23444444555556666665555555554444 4455554444443 345
Q ss_pred cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceE-EEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 013184 318 GHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVA-VLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGF 396 (448)
Q Consensus 318 ~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~ 396 (448)
||...++.++|+||+++|+++..|..||+-.... ...+. -+-||..-|..++.-++ +.|++|+.|++|++||+.+|+
T Consensus 149 GhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa-~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~sgk 226 (390)
T KOG3914|consen 149 GHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPA-TFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITSGK 226 (390)
T ss_pred hhhhhhheeeecCCCCEEEEecCCceEEEEecCc-ccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEecccCC
Confidence 8999999999999999999999999999987754 33333 34579999999999764 568999999999999999998
Q ss_pred eeee
Q 013184 397 EKEQ 400 (448)
Q Consensus 397 ~~~~ 400 (448)
.+..
T Consensus 227 ~L~t 230 (390)
T KOG3914|consen 227 LLDT 230 (390)
T ss_pred cccc
Confidence 7644
No 282
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.90 E-value=2e-07 Score=84.50 Aligned_cols=233 Identities=14% Similarity=0.169 Sum_probs=154.8
Q ss_pred eCCCCeEEEec-CCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCCCeEEEEE
Q 013184 141 STSKHDVYLMS-HFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQGELICKY 217 (448)
Q Consensus 141 ~~~~~~v~~~~-~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~dg~i~vw~ 217 (448)
-|....|+..+ +.++++|--.. .|...|+-.|.. ..+++++++ +...|++|-..|++.-+.
T Consensus 33 ~~~e~gv~~~s~drtvrv~lkrd---------s~q~wpsI~~~m-------P~~~~~~~y~~e~~~L~vg~~ngtvtefs 96 (404)
T KOG1409|consen 33 IPKEEGVISVSEDRTVRVWLKRD---------SGQYWPSIYHYM-------PSPCSAMEYVSESRRLYVGQDNGTVTEFA 96 (404)
T ss_pred ccCCCCeEEccccceeeeEEecc---------ccccCchhhhhC-------CCCceEeeeeccceEEEEEEecceEEEEE
Confidence 34445566655 55699995322 122222221111 135778877 678899999999998887
Q ss_pred cCCCC-ceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEeecCCCeeEEEECCCCCEEEEE
Q 013184 218 LDQPG-VSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFSFPWPVNHTSLSPDGKLLVIV 296 (448)
Q Consensus 218 ~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~ 296 (448)
+...- .....+....|...+..+-+ +..- ..+++++.|..+.---.+.+..+..+....+..++.+.-. +..+|
T Consensus 97 ~sedfnkm~~~r~~~~h~~~v~~~if--~~~~-e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~fvG 171 (404)
T KOG1409|consen 97 LSEDFNKMTFLKDYLAHQARVSAIVF--SLTH-EWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL--YAFVG 171 (404)
T ss_pred hhhhhhhcchhhhhhhhhcceeeEEe--cCCc-eeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE--EEEec
Confidence 65322 12222333344444444433 3332 3788888888776555566655554443222222222211 44555
Q ss_pred ecCCcEEEEE--CCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCC
Q 013184 297 GDNPEGILVD--SQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSD 374 (448)
Q Consensus 297 ~~d~~i~i~d--~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~ 374 (448)
...|.|.+.. ...-.++.++.+|.+.+.+++|.|..+.+.+|..|..+.+||+--.......+.+|...|..+..-+-
T Consensus 172 d~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~ 251 (404)
T KOG1409|consen 172 DHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQH 251 (404)
T ss_pred ccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhh
Confidence 5556655543 34556788899999999999999999999999999999999997655667889999999999988888
Q ss_pred CCEEEEEeCCCeEEEEECCC
Q 013184 375 GNFMAMAEPADFVHVYDAKN 394 (448)
Q Consensus 375 g~~l~s~~~d~~v~vwd~~~ 394 (448)
-+.|.+++.||.|.+|++..
T Consensus 252 t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 252 TRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred heeeeeccCCCeEEEEeccc
Confidence 89999999999999999864
No 283
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.90 E-value=1.6e-05 Score=72.90 Aligned_cols=217 Identities=18% Similarity=0.187 Sum_probs=137.9
Q ss_pred eeeeCCCCeEEEec--CCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCCCeE
Q 013184 138 LVWSTSKHDVYLMS--HFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQGEL 213 (448)
Q Consensus 138 l~~~~~~~~v~~~~--~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~dg~i 213 (448)
.+|.+..+.+|++. .+.|..|+..++.. .++...+ ...+++ .+..|+.+...+.
T Consensus 5 p~~d~~~g~l~~~D~~~~~i~~~~~~~~~~-~~~~~~~--------------------~~G~~~~~~~g~l~v~~~~~~- 62 (246)
T PF08450_consen 5 PVWDPRDGRLYWVDIPGGRIYRVDPDTGEV-EVIDLPG--------------------PNGMAFDRPDGRLYVADSGGI- 62 (246)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTTTEE-EEEESSS--------------------EEEEEEECTTSEEEEEETTCE-
T ss_pred eEEECCCCEEEEEEcCCCEEEEEECCCCeE-EEEecCC--------------------CceEEEEccCCEEEEEEcCce-
Confidence 36777777788874 67799999766533 3344432 133333 4566666666554
Q ss_pred EEEEcCCCCceeEEEeecC--CCCceeeEEEEeCCCCCeeEEEEeCC--------CcEEEEecCCceEEEEeecCCCeeE
Q 013184 214 ICKYLDQPGVSFCSRTTYD--ENAITNAVEIYNSPSGGIHFMASNND--------CGVRDFDMERFQLSKHFSFPWPVNH 283 (448)
Q Consensus 214 ~vw~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~s~s~d--------g~v~iwd~~~~~~~~~~~~~~~v~~ 283 (448)
.++++.+............ .....+.+.+ .|+|. +.++.... |.|..++.. ++.......-...+.
T Consensus 63 ~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~v--d~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNG 138 (246)
T PF08450_consen 63 AVVDPDTGKVTVLADLPDGGVPFNRPNDVAV--DPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNG 138 (246)
T ss_dssp EEEETTTTEEEEEEEEETTCSCTEEEEEEEE---TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEE
T ss_pred EEEecCCCcEEEEeeccCCCcccCCCceEEE--cCCCC-EEEEecCCCccccccccceEEECCC-CeEEEEecCcccccc
Confidence 4558777654433333222 2333445544 89887 55554433 568888887 666655555566799
Q ss_pred EEECCCCCEEEEE-ecCCcEEEEECCCCce-------eEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcc
Q 013184 284 TSLSPDGKLLVIV-GDNPEGILVDSQTGKA-------IMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKS 355 (448)
Q Consensus 284 ~~~sp~~~~l~~~-~~d~~i~i~d~~~~~~-------~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~ 355 (448)
++|+|+++.|+++ +..+.|..+++..... ...+.......-.+++.++|++.++....+.|.+++.. ++.
T Consensus 139 i~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~--G~~ 216 (246)
T PF08450_consen 139 IAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD--GKL 216 (246)
T ss_dssp EEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT--SCE
T ss_pred eEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC--ccE
Confidence 9999999987654 5677888888753221 12222223347789999999988888888999999986 677
Q ss_pred eEEEccCCCCeEEEEE-cCCCCEEEEEe
Q 013184 356 VAVLKGNLGAIRSIRF-TSDGNFMAMAE 382 (448)
Q Consensus 356 ~~~~~~~~~~v~~l~~-sp~g~~l~s~~ 382 (448)
+..+......+++++| .|+.+.|.+.+
T Consensus 217 ~~~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 217 LREIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred EEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 7777766568999999 46766666544
No 284
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.88 E-value=1.5e-08 Score=96.84 Aligned_cols=202 Identities=15% Similarity=0.129 Sum_probs=142.9
Q ss_pred eeEEEEe--cCCEEEEEeCCCeEEEEEcCCCC----ceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEec
Q 013184 193 QVSTLAV--RDNLLIAGGFQGELICKYLDQPG----VSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDM 266 (448)
Q Consensus 193 ~i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~ 266 (448)
.|.+++. +.+-+++++.|.+|++|.+...+ ...|.-+...|...++.+.+.. +. +.++ +.||.|.+||.
T Consensus 737 ~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~--~l-r~i~--ScD~giHlWDP 811 (1034)
T KOG4190|consen 737 KIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLA--DL-RSIA--SCDGGIHLWDP 811 (1034)
T ss_pred HhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeee--cc-ceee--eccCcceeecc
Confidence 4666655 77889999999999999997654 3445666667777888887743 22 2344 45899999998
Q ss_pred CCceEEEEee---cCCCeeEEEECC--CCCEEEEE-ecCCcEEEEECCCCceeEeee-----cCCCcEEEEEEcCCCCEE
Q 013184 267 ERFQLSKHFS---FPWPVNHTSLSP--DGKLLVIV-GDNPEGILVDSQTGKAIMPLC-----GHLDFSFASAWHPDGRIF 335 (448)
Q Consensus 267 ~~~~~~~~~~---~~~~v~~~~~sp--~~~~l~~~-~~d~~i~i~d~~~~~~~~~l~-----~h~~~v~~~~~~p~g~~l 335 (448)
-.++++.... ..+.+..+..-| +..+++.+ +...+|+++|.+.+.....++ +....+.+++..|.|+.+
T Consensus 812 Figr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~l 891 (1034)
T KOG4190|consen 812 FIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKL 891 (1034)
T ss_pred cccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchh
Confidence 8777665443 223333444434 34444444 678899999999988776665 344668899999999999
Q ss_pred EEEeCCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEE-EECCCCceeeee
Q 013184 336 ATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHV-YDAKNGFEKEQE 401 (448)
Q Consensus 336 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~v-wd~~~~~~~~~~ 401 (448)
+.+-..|.|.+.|.|+ ++.+..+..-.-....++ .|..+.|+....|.++.| |..-.|....+.
T Consensus 892 Aa~LSnGci~~LDaR~-G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~ 956 (1034)
T KOG4190|consen 892 AAALSNGCIAILDARN-GKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQD 956 (1034)
T ss_pred hHHhcCCcEEEEecCC-CceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeecc
Confidence 9999999999999998 776766655444343343 356678888778888888 887666544443
No 285
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.87 E-value=1e-05 Score=73.67 Aligned_cols=219 Identities=16% Similarity=0.087 Sum_probs=136.5
Q ss_pred CCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe-cCCEEEEEeCCCeEEEEEcCCCCceeEEEee
Q 013184 152 HFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV-RDNLLIAGGFQGELICKYLDQPGVSFCSRTT 230 (448)
Q Consensus 152 ~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~-~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~ 230 (448)
+++|..||+.+++..-...+..... ...+..+ .++.+++++.++.|.+|+..+++........
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~----------------~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~ 65 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIG----------------GPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLP 65 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCS----------------SEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECS
T ss_pred CCEEEEEECCCCCEEEEEECCCCCC----------------CccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecc
Confidence 4667888876665554444421011 1222233 7788888899999999999887755433331
Q ss_pred cCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEe-ecCC----CeeEEEECCCCCEEEEEecCCcEEEE
Q 013184 231 YDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHF-SFPW----PVNHTSLSPDGKLLVIVGDNPEGILV 305 (448)
Q Consensus 231 ~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~-~~~~----~v~~~~~sp~~~~l~~~~~d~~i~i~ 305 (448)
.. ...... ..++ .+++++.++.|+.+|..+|+.+... .... ..........+..++++..++.+..+
T Consensus 66 ~~---~~~~~~----~~~~-~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~ 137 (238)
T PF13360_consen 66 GP---ISGAPV----VDGG-RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVAL 137 (238)
T ss_dssp SC---GGSGEE----EETT-EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEE
T ss_pred cc---ccceee----eccc-ccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEE
Confidence 11 111111 1233 5666668889999999999998884 3221 11222222348889999989999999
Q ss_pred ECCCCceeEeeecCCCc----------EEEEEEcCCCCEEEEEeCCCc-EEEEEccCCCcceEEEccCCCCeEEEEEcCC
Q 013184 306 DSQTGKAIMPLCGHLDF----------SFASAWHPDGRIFATGNQDKT-CRVWDVRNLSKSVAVLKGNLGAIRSIRFTSD 374 (448)
Q Consensus 306 d~~~~~~~~~l~~h~~~----------v~~~~~~p~g~~l~s~~~d~~-i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~ 374 (448)
|+++|+.+......... +..-....++ .++.++.++. +.+ |+.+ ++.+-... ...+..+ ..+.
T Consensus 138 d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~t-g~~~w~~~--~~~~~~~-~~~~ 211 (238)
T PF13360_consen 138 DPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLAT-GEKLWSKP--ISGIYSL-PSVD 211 (238)
T ss_dssp ETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTT-TEEEEEEC--SS-ECEC-EECC
T ss_pred ecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCC-CCEEEEec--CCCccCC-ceee
Confidence 99999998777653322 1222223345 6666777775 555 9976 55443222 3333332 3567
Q ss_pred CCEEEEEeCCCeEEEEECCCCceeee
Q 013184 375 GNFMAMAEPADFVHVYDAKNGFEKEQ 400 (448)
Q Consensus 375 g~~l~s~~~d~~v~vwd~~~~~~~~~ 400 (448)
+..|++++.++.|..||+.+|+.+.+
T Consensus 212 ~~~l~~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 212 GGTLYVTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp CTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeE
Confidence 88888888999999999999987643
No 286
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.80 E-value=3.6e-08 Score=94.22 Aligned_cols=266 Identities=14% Similarity=0.104 Sum_probs=163.1
Q ss_pred eCCCCeEEEe-cCCeEEEEecCCC-----ceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEecCCEEEEEeCCCeEE
Q 013184 141 STSKHDVYLM-SHFSIVHWSSLSS-----KRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAVRDNLLIAGGFQGELI 214 (448)
Q Consensus 141 ~~~~~~v~~~-~~~~v~~w~~~~~-----~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~~~~~lvsg~~dg~i~ 214 (448)
....+....+ .+.+|++|+.... ...+......|..| |..+.+-...-...+.||.|.
T Consensus 744 idNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~----------------i~~igfL~~lr~i~ScD~giH 807 (1034)
T KOG4190|consen 744 IDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKP----------------IHDIGFLADLRSIASCDGGIH 807 (1034)
T ss_pred cccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCc----------------ccceeeeeccceeeeccCcce
Confidence 3444444444 5778999997432 12244455555554 777777222223345689999
Q ss_pred EEEcCCCCceeEEEeecCCCCceeeEEEEeCCC-CCeeEEEE-eCCCcEEEEecCCceEEEEee------cCCCeeEEEE
Q 013184 215 CKYLDQPGVSFCSRTTYDENAITNAVEIYNSPS-GGIHFMAS-NNDCGVRDFDMERFQLSKHFS------FPWPVNHTSL 286 (448)
Q Consensus 215 vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~-s~dg~v~iwd~~~~~~~~~~~------~~~~v~~~~~ 286 (448)
+||.-.+.......-...+.+..+..++ ++ ...+++++ +...+|+++|.+.+.....++ ...-+.+++.
T Consensus 808 lWDPFigr~Laq~~dapk~~a~~~ikcl---~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV 884 (1034)
T KOG4190|consen 808 LWDPFIGRLLAQMEDAPKEGAGGNIKCL---ENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV 884 (1034)
T ss_pred eecccccchhHhhhcCcccCCCceeEec---ccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence 9997655432111112223333333333 33 33344444 778999999999887666555 2245889999
Q ss_pred CCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEE-EEccCCCcceEEEccCCCC
Q 013184 287 SPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRV-WDVRNLSKSVAVLKGNLGA 365 (448)
Q Consensus 287 sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~i-wd~~~~~~~~~~~~~~~~~ 365 (448)
.|.|++++++-.+|.|.+.|.++|+.+..+..-.-....++ .|..+.++....|.++-+ |-... +......+....+
T Consensus 885 a~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhald-gimh~q~kpppep 962 (1034)
T KOG4190|consen 885 ADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALD-GIMHLQDKPPPEP 962 (1034)
T ss_pred ccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcC-CeeeeccCCCCcc
Confidence 99999999999999999999999999887765443333333 356677888888888888 87643 3333333333333
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCCc----eeeee--ecCcCceEEEEEccCCCeEEEEEecCCc
Q 013184 366 IRSIRFTSDGNFMAMAEPADFVHVYDAKNGF----EKEQE--IDFFGEISGMTFSPDTEALFIGVWDRTY 429 (448)
Q Consensus 366 v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~----~~~~~--~~~~~~v~~~~fspdg~~L~~~~~D~~~ 429 (448)
..-+ -.-|.-|+++.....+.||--.... .+..+ ....|..++++--|=...++.|..-|.+
T Consensus 963 ahfl--qsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~I 1030 (1034)
T KOG4190|consen 963 AHFL--QSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAI 1030 (1034)
T ss_pred hhhh--hccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCce
Confidence 2222 2246778888877888888521110 11111 1245778888888877767777665543
No 287
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.80 E-value=6.6e-08 Score=95.42 Aligned_cols=266 Identities=11% Similarity=0.073 Sum_probs=163.6
Q ss_pred eeeeCCCCeEEEecCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEecCCEEEEEeCCCeEEEEE
Q 013184 138 LVWSTSKHDVYLMSHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAVRDNLLIAGGFQGELICKY 217 (448)
Q Consensus 138 l~~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~~~~~lvsg~~dg~i~vw~ 217 (448)
+...+.+.++.+++...+.+.++...-.....- -|+.|.+-. ..+++--+.....+|+.+... -.+|+
T Consensus 30 ~si~p~grdi~lAsr~gl~i~dld~p~~ppr~l--~h~tpw~va---------d~qws~h~a~~~wiVsts~qk-aiiwn 97 (1081)
T KOG0309|consen 30 VSINPSGRDIVLASRQGLYIIDLDDPFTPPRWL--HHITPWQVA---------DVQWSPHPAKPYWIVSTSNQK-AIIWN 97 (1081)
T ss_pred eeeccccchhhhhhhcCeEEEeccCCCCCceee--eccCcchhc---------ceecccCCCCceeEEecCcch-hhhhh
Confidence 345677888888887777776654432222211 123332100 011111111333444444444 46899
Q ss_pred cCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCce-EEEEee-cCCCeeEEEECCCCCEEEE
Q 013184 218 LDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQ-LSKHFS-FPWPVNHTSLSPDGKLLVI 295 (448)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~-~~~~~~-~~~~v~~~~~sp~~~~l~~ 295 (448)
+........-....+|...+..+.+ .|.....+++++.|-.+..||+++-. ++..+. .......++|+-....+.+
T Consensus 98 lA~ss~~aIef~lhghsraitd~n~--~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vla 175 (1081)
T KOG0309|consen 98 LAKSSSNAIEFVLHGHSRAITDINF--NPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLA 175 (1081)
T ss_pred hhcCCccceEEEEecCccceecccc--CCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhh
Confidence 8776643333344445544444444 78777799999999999999998643 444444 4455678899875445555
Q ss_pred EecCCcEEEEECCCCc-eeEeeecCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEEEEcC
Q 013184 296 VGDNPEGILVDSQTGK-AIMPLCGHLDFSFASAWHP-DGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTS 373 (448)
Q Consensus 296 ~~~d~~i~i~d~~~~~-~~~~l~~h~~~v~~~~~~p-~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp 373 (448)
.+..+.|++||.+.|. ++..+++|...|..++|.. -...+.+++.|++|+.||..+..+.-........+|..-++-|
T Consensus 176 sshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~P 255 (1081)
T KOG0309|consen 176 SSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLP 255 (1081)
T ss_pred hccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccc
Confidence 6666789999998764 5778999999999998875 3346889999999999999764333333334556777778888
Q ss_pred CCC--EEEEEeCCCeEEEEECC---------C-CceeeeeecCcCceEEEEEccCC
Q 013184 374 DGN--FMAMAEPADFVHVYDAK---------N-GFEKEQEIDFFGEISGMTFSPDT 417 (448)
Q Consensus 374 ~g~--~l~s~~~d~~v~vwd~~---------~-~~~~~~~~~~~~~v~~~~fspdg 417 (448)
-|. ++.---.+..|.+++.+ + ...+..+.+|...|....|-..+
T Consensus 256 fg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~ 311 (1081)
T KOG0309|consen 256 FGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRK 311 (1081)
T ss_pred cCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcc
Confidence 553 22222223345554433 2 23567788888877776665543
No 288
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.80 E-value=1.6e-07 Score=94.91 Aligned_cols=181 Identities=19% Similarity=0.253 Sum_probs=137.4
Q ss_pred cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee-cC
Q 013184 200 RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS-FP 278 (448)
Q Consensus 200 ~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~ 278 (448)
++..++.|+....+...|+.+......... ...+ +..+ ..+++.+.+|...|+|.+-|..+.+.+.++. |.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v--~a~~-v~im-----R~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs 217 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNV--SASG-VTIM-----RYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHS 217 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeec--cCCc-eEEE-----EecCcEEEeecccceEEeecCCcCceeeeeeccc
Confidence 778899999999999999987653211111 1111 2222 2234589999999999999999999999999 99
Q ss_pred CCeeEEEECCCCCEEEEEec---------CCcEEEEECCCCceeEeeecCCCcEEEEEEcCC-CCEEEEEeCCCcEEEEE
Q 013184 279 WPVNHTSLSPDGKLLVIVGD---------NPEGILVDSQTGKAIMPLCGHLDFSFASAWHPD-GRIFATGNQDKTCRVWD 348 (448)
Q Consensus 279 ~~v~~~~~sp~~~~l~~~~~---------d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~-g~~l~s~~~d~~i~iwd 348 (448)
+.|..+..+ |++|+++|. |..|++||++..+.+..+.-+.++ .-+.|+|. ...++++++.|.+.+-|
T Consensus 218 ~siSDfDv~--GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd 294 (1118)
T KOG1275|consen 218 GSISDFDVQ--GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVD 294 (1118)
T ss_pred cceeeeecc--CCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeecc
Confidence 998876664 899999874 456899999998877766655555 44678884 35788889999999999
Q ss_pred ccCCCcc---eEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 013184 349 VRNLSKS---VAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYD 391 (448)
Q Consensus 349 ~~~~~~~---~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd 391 (448)
....+.+ +..+......+..+.+|++|..||.|..+|.|.+|-
T Consensus 295 ~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 295 TATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 4433333 333444455699999999999999999999999997
No 289
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.78 E-value=3e-05 Score=75.96 Aligned_cols=139 Identities=13% Similarity=0.104 Sum_probs=95.3
Q ss_pred eecCCCeeEEEECC-CCCEEEEEe----cCCc----EEEEECCCCcee----EeeecCCCcEEEEEEcCCCCEEEEEeCC
Q 013184 275 FSFPWPVNHTSLSP-DGKLLVIVG----DNPE----GILVDSQTGKAI----MPLCGHLDFSFASAWHPDGRIFATGNQD 341 (448)
Q Consensus 275 ~~~~~~v~~~~~sp-~~~~l~~~~----~d~~----i~i~d~~~~~~~----~~l~~h~~~v~~~~~~p~g~~l~s~~~d 341 (448)
....+...++.||- ++..+.+.. .+|. -.+|+...++.. .++ .....+.+++++|+...++.|+.|
T Consensus 202 irTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsi-pL~s~v~~ca~sp~E~kLvlGC~D 280 (545)
T PF11768_consen 202 IRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSI-PLPSQVICCARSPSEDKLVLGCED 280 (545)
T ss_pred EEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEE-ecCCcceEEecCcccceEEEEecC
Confidence 33455567788886 556666643 3443 345666544321 122 367789999999999999999999
Q ss_pred CcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeee-------------ee---cCc
Q 013184 342 KTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQ-------------EI---DFF 405 (448)
Q Consensus 342 ~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~-------------~~---~~~ 405 (448)
|+|.+||... + +..+....-..+.++|+|+|.++++|+..|.+.+||+.-.....+ +. .+.
T Consensus 281 gSiiLyD~~~-~--~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi~~qLlsEd~~P~~~L~Ls~yf~~~ 357 (545)
T PF11768_consen 281 GSIILYDTTR-G--VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPIKMQLLSEDATPKSTLQLSKYFRVS 357 (545)
T ss_pred CeEEEEEcCC-C--eeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCccceeeccccCCCccEEeeehhccCc
Confidence 9999999864 2 333333445578899999999999999999999999865432221 11 233
Q ss_pred CceEEEEEccCC
Q 013184 406 GEISGMTFSPDT 417 (448)
Q Consensus 406 ~~v~~~~fspdg 417 (448)
..+..+.|++..
T Consensus 358 ~~L~~iqW~~~~ 369 (545)
T PF11768_consen 358 SSLVHIQWAPAP 369 (545)
T ss_pred chhheeEeccCC
Confidence 457788888543
No 290
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.77 E-value=1.4e-06 Score=86.01 Aligned_cols=282 Identities=15% Similarity=0.093 Sum_probs=171.2
Q ss_pred cccccceeeeCCCCeEEEec-CCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEe
Q 013184 132 HFQLRNLVWSTSKHDVYLMS-HFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGG 208 (448)
Q Consensus 132 hfq~r~l~~~~~~~~v~~~~-~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~ 208 (448)
|-+|..+-|....+.|.+++ ++.+++..+.+.... .+..|-.+++. ...+..-.-++..|.-+.+ +...|-+..
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d--~~~~glaa~sn-LsmNQtLeGH~~sV~vvTWNe~~QKLTtSD 90 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTD--LNKSGLAAASN-LSMNQTLEGHNASVMVVTWNENNQKLTTSD 90 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCc--ccccccccccc-cchhhhhccCcceEEEEEeccccccccccC
Confidence 34455556777777777764 666777765432211 11111000000 0000000001123555555 557788899
Q ss_pred CCCeEEEEEcCCCCceeEEEeec-CCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEeecCCCeeEEEEC
Q 013184 209 FQGELICKYLDQPGVSFCSRTTY-DENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFSFPWPVNHTSLS 287 (448)
Q Consensus 209 ~dg~i~vw~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~s 287 (448)
.+|-|.+|-+-.+... -.+.. .....+.+++| ..+|. .+.....||.|.+=.++..++-..--.......+.|+
T Consensus 91 t~GlIiVWmlykgsW~--EEMiNnRnKSvV~SmsW--n~dG~-kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws 165 (1189)
T KOG2041|consen 91 TSGLIIVWMLYKGSWC--EEMINNRNKSVVVSMSW--NLDGT-KICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWS 165 (1189)
T ss_pred CCceEEEEeeecccHH--HHHhhCcCccEEEEEEE--cCCCc-EEEEEEccCCEEEEeeccceecchhcchheccceeec
Confidence 9999999998776532 11222 22333444444 77776 6666777777776666654432211112224578899
Q ss_pred CCCCEEEEEecCCcEEEEECCCCc-------eeEe----eecCCCcEEEEEEc--------CCCCEEEEEeCCCcEEEEE
Q 013184 288 PDGKLLVIVGDNPEGILVDSQTGK-------AIMP----LCGHLDFSFASAWH--------PDGRIFATGNQDKTCRVWD 348 (448)
Q Consensus 288 p~~~~l~~~~~d~~i~i~d~~~~~-------~~~~----l~~h~~~v~~~~~~--------p~g~~l~s~~~d~~i~iwd 348 (448)
+|.+.++.+-.+|.+.++|.+..- +... +......+..+.|. |+-..|+.+-..|.+.|..
T Consensus 166 ~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR 245 (1189)
T KOG2041|consen 166 EDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMR 245 (1189)
T ss_pred ccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhh
Confidence 999999999999999999976421 1111 11122234455553 4667899999999999887
Q ss_pred ccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCC---------eEEEEECCCCceeeeeecCcCceEEEEEccCCCe
Q 013184 349 VRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPAD---------FVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEA 419 (448)
Q Consensus 349 ~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~---------~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~ 419 (448)
-.+...++..-++ -.|..+.|+++|.+||+++.+. .|++|. .-|.....+.-....|++++|-..|-.
T Consensus 246 ~eND~~Pvv~dtg--m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~gLr 322 (1189)
T KOG2041|consen 246 SENDPEPVVVDTG--MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGTGLR 322 (1189)
T ss_pred hcCCCCCeEEecc--cEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcCCceE
Confidence 6665566555444 5688999999999999987642 566666 456666667666778999999877766
Q ss_pred EEEEE
Q 013184 420 LFIGV 424 (448)
Q Consensus 420 L~~~~ 424 (448)
++.+.
T Consensus 323 iA~Av 327 (1189)
T KOG2041|consen 323 IAIAV 327 (1189)
T ss_pred EEEEe
Confidence 66553
No 291
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.77 E-value=3.5e-08 Score=86.07 Aligned_cols=195 Identities=16% Similarity=0.233 Sum_probs=118.3
Q ss_pred eeEEEEe-cCCEEEEEeCCCeEEEEEcCCC----------C--ceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCC
Q 013184 193 QVSTLAV-RDNLLIAGGFQGELICKYLDQP----------G--VSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDC 259 (448)
Q Consensus 193 ~i~~l~~-~~~~lvsg~~dg~i~vw~~~~~----------~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg 259 (448)
.|+.+.+ ....|+++..++.+......+. + ...+.. .....+......+ +. . .+++++.||
T Consensus 38 ~~~~~~~v~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a-~~sep~p~~~~s~---~~-t-~V~~~~~dg 111 (319)
T KOG4714|consen 38 KLSKVSLSAEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLA-KNSEIDPNDACTM---TD-N-RVCIGYADG 111 (319)
T ss_pred EEEEeechhhheeecccchhheeeeccceEEEechhhcccCcCceeeee-ccCCCCCcccccc---cC-C-ceEecCCCc
Confidence 3677766 5566777777776655443211 1 111111 2222222222222 22 2 689999999
Q ss_pred cEEEEecCCce-EEEEee--cCCCeeEEEECCCCCEEEEEe-----cCCcEEEEECCCCceeEeeecCCCcEEEEEEcCC
Q 013184 260 GVRDFDMERFQ-LSKHFS--FPWPVNHTSLSPDGKLLVIVG-----DNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPD 331 (448)
Q Consensus 260 ~v~iwd~~~~~-~~~~~~--~~~~v~~~~~sp~~~~l~~~~-----~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~ 331 (448)
.+.+++.+.-. ....+. +.+. .+.+....+..+.++. .-+..++|+++-.+.+..-....+.|.+++-+|.
T Consensus 112 ~~~v~s~~~~~~~~~~i~~~~~~~-as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~ 190 (319)
T KOG4714|consen 112 SLAVFSTDKDLALMSRIPSIHSGS-ASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPA 190 (319)
T ss_pred eEEEEechHHHhhhhhcccccccc-cccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcc
Confidence 99999976511 111111 1111 1122222344444332 1224455655433322211122345899999995
Q ss_pred -CCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCC
Q 013184 332 -GRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTS-DGNFMAMAEPADFVHVYDAKN 394 (448)
Q Consensus 332 -g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp-~g~~l~s~~~d~~v~vwd~~~ 394 (448)
.+++++|+.||.+-+||.|+...++..+..|..+|..+-|+| ++..|++++.||.+.-||..+
T Consensus 191 qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 191 QQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 457888899999999999997778888999999999999999 568999999999999999764
No 292
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.76 E-value=2.8e-07 Score=83.59 Aligned_cols=177 Identities=12% Similarity=0.138 Sum_probs=134.8
Q ss_pred eEEEEeCCCcEEEEe-cCCceEEEEee--cCCCeeEEEECCCCCEEEEEecCCcEEEEECC----CCceeEeeecCCCcE
Q 013184 251 HFMASNNDCGVRDFD-MERFQLSKHFS--FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQ----TGKAIMPLCGHLDFS 323 (448)
Q Consensus 251 ~l~s~s~dg~v~iwd-~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~----~~~~~~~l~~h~~~v 323 (448)
-+++.+.|.++|||- ...++.-..+. .+.+++++.+++....|++|-..|++.-+.+. ....++....|...+
T Consensus 38 gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v 117 (404)
T KOG1409|consen 38 GVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARV 117 (404)
T ss_pred CeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcce
Confidence 589999999999994 55666555555 57889999999999999999999998877543 223344445677788
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEc----------------------------------------c-CCCcceEEEccC
Q 013184 324 FASAWHPDGRIFATGNQDKTCRVWDV----------------------------------------R-NLSKSVAVLKGN 362 (448)
Q Consensus 324 ~~~~~~p~g~~l~s~~~d~~i~iwd~----------------------------------------~-~~~~~~~~~~~~ 362 (448)
+.+-|+-...++++.+.|..+. |-. . +.-.++.++.+|
T Consensus 118 ~~~if~~~~e~V~s~~~dk~~~-~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h 196 (404)
T KOG1409|consen 118 SAIVFSLTHEWVLSTGKDKQFA-WHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGH 196 (404)
T ss_pred eeEEecCCceeEEEeccccceE-EEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCc
Confidence 8777776666666666664332 110 0 112456778899
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCcee-eeeecCcCceEEEEEccCCCeEEEEEecCC
Q 013184 363 LGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEK-EQEIDFFGEISGMTFSPDTEALFIGVWDRT 428 (448)
Q Consensus 363 ~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~-~~~~~~~~~v~~~~fspdg~~L~~~~~D~~ 428 (448)
.+.+.+++|.|..+.|.+|..|..|.+||+.-.+.. ....+|...|..++..+--+.|++++.|+.
T Consensus 197 ~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~ 263 (404)
T KOG1409|consen 197 TGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGG 263 (404)
T ss_pred ccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCe
Confidence 999999999999999999999999999999765433 456678888999998888899999998854
No 293
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.75 E-value=2.2e-07 Score=93.99 Aligned_cols=179 Identities=13% Similarity=0.096 Sum_probs=136.8
Q ss_pred CeeEEEEeCCCcEEEEecCCceEEEEeecC-CCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEE
Q 013184 249 GIHFMASNNDCGVRDFDMERFQLSKHFSFP-WPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASA 327 (448)
Q Consensus 249 ~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~-~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~ 327 (448)
...++.|+-...+..+|+.+.+..+..... ..|.-++. +++.+.+|...|+|.+-|.++.+.++++..|.+.+..+.
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD 224 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD 224 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeeee
Confidence 346788888888999999999888877733 34555444 588999999999999999999999999999999987665
Q ss_pred EcCCCCEEEEEeC---------CCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCCc-
Q 013184 328 WHPDGRIFATGNQ---------DKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDG-NFMAMAEPADFVHVYDAKNGF- 396 (448)
Q Consensus 328 ~~p~g~~l~s~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g-~~l~s~~~d~~v~vwd~~~~~- 396 (448)
. .|+.|++++. |..|+|||+|. -+.+..+.-+.++ .-++|.|.= ..+++++..|...+-|..+..
T Consensus 225 v--~GNlLitCG~S~R~~~l~~D~FvkVYDLRm-mral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN 300 (1118)
T KOG1275|consen 225 V--QGNLLITCGYSMRRYNLAMDPFVKVYDLRM-MRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN 300 (1118)
T ss_pred c--cCCeEEEeecccccccccccchhhhhhhhh-hhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCC
Confidence 5 6889998874 56789999997 4555555555554 557888853 578888899999999943322
Q ss_pred ---eeeeeecCcCceEEEEEccCCCeEEEEEecCCcceEE
Q 013184 397 ---EKEQEIDFFGEISGMTFSPDTEALFIGVWDRTYGSLL 433 (448)
Q Consensus 397 ---~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~~~~ll 433 (448)
.+..+......+.++.+|++|+.|+.|-.++.+.-+-
T Consensus 301 P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 301 PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 2233344455699999999999999998887655444
No 294
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.72 E-value=1.4e-05 Score=85.94 Aligned_cols=226 Identities=13% Similarity=0.148 Sum_probs=144.8
Q ss_pred eeeEEEEe--cCCEEEEEeCCCeEEEE----EcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEe
Q 013184 192 TQVSTLAV--RDNLLIAGGFQGELICK----YLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFD 265 (448)
Q Consensus 192 ~~i~~l~~--~~~~lvsg~~dg~i~vw----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd 265 (448)
..|.++.+ +...++.+..+|.|.+. +....... ..+.-..-+.+.+| +|++. +|+..+.+++|.+.+
T Consensus 76 ~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E----~VG~vd~GI~a~~W--SPD~E-lla~vT~~~~l~~mt 148 (928)
T PF04762_consen 76 DKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIE----IVGSVDSGILAASW--SPDEE-LLALVTGEGNLLLMT 148 (928)
T ss_pred CcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeE----EEEEEcCcEEEEEE--CCCcC-EEEEEeCCCEEEEEe
Confidence 46888888 78889999999999998 44443322 22222333456655 99988 666676678887764
Q ss_pred cCCceEE------------------------EEee-------------------------cCCCeeEEEECCCCCEEEEE
Q 013184 266 MERFQLS------------------------KHFS-------------------------FPWPVNHTSLSPDGKLLVIV 296 (448)
Q Consensus 266 ~~~~~~~------------------------~~~~-------------------------~~~~v~~~~~sp~~~~l~~~ 296 (448)
.. +.++ ..|. ....-..++|..||.++|+.
T Consensus 149 ~~-fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVs 227 (928)
T PF04762_consen 149 RD-FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVS 227 (928)
T ss_pred cc-ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEE
Confidence 21 1111 0010 11134578899999999988
Q ss_pred ec------CCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeC---CCcEEEEEccCCCcceE--EEc--cCC
Q 013184 297 GD------NPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQ---DKTCRVWDVRNLSKSVA--VLK--GNL 363 (448)
Q Consensus 297 ~~------d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~---d~~i~iwd~~~~~~~~~--~~~--~~~ 363 (448)
+- -..+++|+.. |....+-..-.+--.+++|.|.|++||+.-. ...|.+|.-+ +..-. .+. ...
T Consensus 228 s~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN--GLrhgeF~l~~~~~~ 304 (928)
T PF04762_consen 228 SVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN--GLRHGEFTLRFDPEE 304 (928)
T ss_pred EEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC--CcEeeeEecCCCCCC
Confidence 74 2579999854 6654444433333457899999999998864 3346667653 32222 222 345
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCce-eeeeec--CcCceEEEEEccC-CCeEEEEEecCCc
Q 013184 364 GAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFE-KEQEID--FFGEISGMTFSPD-TEALFIGVWDRTY 429 (448)
Q Consensus 364 ~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~-~~~~~~--~~~~v~~~~fspd-g~~L~~~~~D~~~ 429 (448)
..|..+.|++++..||....+. |.+|-..+..- +++... ....+..+.|+|. ...|.+....+.+
T Consensus 305 ~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~ 373 (928)
T PF04762_consen 305 EKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQY 373 (928)
T ss_pred ceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcE
Confidence 6799999999999999987665 99999876531 222222 2233556999995 4456666654443
No 295
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.72 E-value=9.6e-07 Score=84.84 Aligned_cols=182 Identities=18% Similarity=0.231 Sum_probs=134.8
Q ss_pred ceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEeecCCCeeEEEECCCCCEEEEEec-----------CCcEEE
Q 013184 236 ITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFSFPWPVNHTSLSPDGKLLVIVGD-----------NPEGIL 304 (448)
Q Consensus 236 ~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-----------d~~i~i 304 (448)
..+.+.| ||.|. +|++--. ..|.+|--++...++.|.|++ |.-+.|||+.++|++-+. ...++|
T Consensus 212 Tetyv~w--SP~GT-YL~t~Hk-~GI~lWGG~~f~r~~RF~Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~I 286 (698)
T KOG2314|consen 212 TETYVRW--SPKGT-YLVTFHK-QGIALWGGESFDRIQRFYHPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLII 286 (698)
T ss_pred eeeeEEe--cCCce-EEEEEec-cceeeecCccHHHHHhccCCC-ceeeecCCccceEEEecCCccccCcccCCCceEEE
Confidence 3445555 99986 6666554 558899988888888888876 889999999999999652 257999
Q ss_pred EECCCCceeEeeecC--CCcEE-EEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEE
Q 013184 305 VDSQTGKAIMPLCGH--LDFSF-ASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMA 381 (448)
Q Consensus 305 ~d~~~~~~~~~l~~h--~~~v~-~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~ 381 (448)
||+.+|...+.+... ...+. -..||.|++++|.-..+ +|.||+..+ -.++..-.-....|....|+|.+..||.=
T Consensus 287 WDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtps-f~lld~Kslki~gIr~FswsP~~~llAYw 364 (698)
T KOG2314|consen 287 WDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPS-FMLLDKKSLKISGIRDFSWSPTSNLLAYW 364 (698)
T ss_pred EEccccchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCc-eeeecccccCCccccCcccCCCcceEEEE
Confidence 999999988877652 22222 35899999999987775 599998754 22222212234578999999999999875
Q ss_pred eCC-----CeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEE
Q 013184 382 EPA-----DFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGV 424 (448)
Q Consensus 382 ~~d-----~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~ 424 (448)
... ..+.+-.+.+++.++...-|.-.=..+.|..+|.+|+.-.
T Consensus 365 tpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkv 412 (698)
T KOG2314|consen 365 TPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKV 412 (698)
T ss_pred cccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEE
Confidence 432 3688889988888776655555556788999999998764
No 296
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.71 E-value=6.1e-08 Score=87.79 Aligned_cols=159 Identities=11% Similarity=0.074 Sum_probs=121.5
Q ss_pred EEEeCCCcEEEEecCCceEEEEeecCCCeeEEEECCCCCEEEEEecCCcEEEEECCCC-----ceeEeeecCCCcEEEEE
Q 013184 253 MASNNDCGVRDFDMERFQLSKHFSFPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTG-----KAIMPLCGHLDFSFASA 327 (448)
Q Consensus 253 ~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~-----~~~~~l~~h~~~v~~~~ 327 (448)
++.+.+..|-+-+++++.. +.|...+.|.++.|...++++..|+.+|.|..+|++.+ .+.+.+. |...|+++.
T Consensus 228 fs~G~sqqv~L~nvetg~~-qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq 305 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-QSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQ 305 (425)
T ss_pred ecccccceeEEEEeecccc-cccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhhh
Confidence 5555677888999988654 44557788999999988999999999999999999865 3444554 888999987
Q ss_pred EcC-CCCEEEEEeCCCcEEEEEccCCCcc---eEEEccCCCCeEE--EEEcCCCCEEEEEeCCCeEEEEECCCCceeeee
Q 013184 328 WHP-DGRIFATGNQDKTCRVWDVRNLSKS---VAVLKGNLGAIRS--IRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQE 401 (448)
Q Consensus 328 ~~p-~g~~l~s~~~d~~i~iwd~~~~~~~---~~~~~~~~~~v~~--l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~ 401 (448)
.-. ++++|++.+.+|+|++||.|. .++ +....+|...-.- +-..+....+++++.|...+||.+..|..+..+
T Consensus 306 ~Lq~s~q~LmaS~M~gkikLyD~R~-~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ti 384 (425)
T KOG2695|consen 306 ILQFSQQKLMASDMTGKIKLYDLRA-TKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTI 384 (425)
T ss_pred hhccccceEeeccCcCceeEeeehh-hhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeecc
Confidence 666 788999999999999999987 455 7777887543222 334556678899999999999999999888766
Q ss_pred ecCc----CceEEEEEc
Q 013184 402 IDFF----GEISGMTFS 414 (448)
Q Consensus 402 ~~~~----~~v~~~~fs 414 (448)
+-.. ..+.+++|.
T Consensus 385 pf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 385 PFPYSASEVDIPSVAFD 401 (425)
T ss_pred CCCCccccccccceehh
Confidence 5322 135556654
No 297
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.69 E-value=5.8e-08 Score=61.07 Aligned_cols=39 Identities=44% Similarity=0.824 Sum_probs=36.8
Q ss_pred CceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 013184 310 GKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWD 348 (448)
Q Consensus 310 ~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd 348 (448)
++++.++.+|...|.+++|+|++.+|++++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 357889999999999999999999999999999999997
No 298
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.68 E-value=4.5e-05 Score=68.21 Aligned_cols=239 Identities=14% Similarity=0.113 Sum_probs=125.8
Q ss_pred eeeCCCCeEEEecCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEecCCEEEEEeCCCeEEEEEc
Q 013184 139 VWSTSKHDVYLMSHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAVRDNLLIAGGFQGELICKYL 218 (448)
Q Consensus 139 ~~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~~~~~lvsg~~dg~i~vw~~ 218 (448)
+.+..+..+....+..|.+=+....-...+-+.. .|..++| +=+-.+.+.++.+||.+...|+|+++|+
T Consensus 4 ~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcq---VpkD~~P--------QWRkl~WSpD~tlLa~a~S~G~i~vfdl 72 (282)
T PF15492_consen 4 ALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQ---VPKDPNP--------QWRKLAWSPDCTLLAYAESTGTIRVFDL 72 (282)
T ss_pred eecCCCcEEEEEeccEEEEEeccCCchheeEEEe---cCCCCCc--------hheEEEECCCCcEEEEEcCCCeEEEEec
Confidence 3444555566667777666654333222222222 1222222 1123344459999999999999999999
Q ss_pred CCCCceeEEE---eecCCCCceeeEEEEeCCCC---CeeEEEEeCCCcEEEEecC-----CceEEEEee----cCCCeeE
Q 013184 219 DQPGVSFCSR---TTYDENAITNAVEIYNSPSG---GIHFMASNNDCGVRDFDME-----RFQLSKHFS----FPWPVNH 283 (448)
Q Consensus 219 ~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~---~~~l~s~s~dg~v~iwd~~-----~~~~~~~~~----~~~~v~~ 283 (448)
.....-.... ........+..+.+...... ...|++-+..|.++-|-+. ..+....+. ++..|++
T Consensus 73 ~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~ 152 (282)
T PF15492_consen 73 MGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINS 152 (282)
T ss_pred ccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeE
Confidence 7644221111 11111122223333222211 2256777778888877652 334444444 4778999
Q ss_pred EEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEE---cCCCCEEEEEeCCC------cEEEEEccCCCc
Q 013184 284 TSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAW---HPDGRIFATGNQDK------TCRVWDVRNLSK 354 (448)
Q Consensus 284 ~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~---~p~g~~l~s~~~d~------~i~iwd~~~~~~ 354 (448)
+.++|.-++|++||.... +.+. -++-...+++=.. .|..+. ++...++ +-.+|.+-+ .+
T Consensus 153 ~vy~p~h~LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Pyyk~-v~~~~~~~~~~~~~~~~~~~~~-~~ 220 (282)
T PF15492_consen 153 AVYHPKHRLLLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPYYKQ-VTSSEDDITASSKRRGLLRIPS-FK 220 (282)
T ss_pred EEEcCCCCEEEEeccCCC------CCcc----ccccccCceEEEEcCCCCcEEE-ccccCccccccccccceeeccc-ee
Confidence 999999899888875422 0000 0011111111111 111111 1111111 112332221 11
Q ss_pred ceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeee
Q 013184 355 SVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQ 400 (448)
Q Consensus 355 ~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~ 400 (448)
...........|..+..||||..||+...+|.|.+|++.+......
T Consensus 221 ~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~ 266 (282)
T PF15492_consen 221 FFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRS 266 (282)
T ss_pred eeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcc
Confidence 1111123456899999999999999999999999999998765543
No 299
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.66 E-value=4.2e-07 Score=89.96 Aligned_cols=222 Identities=13% Similarity=0.120 Sum_probs=148.7
Q ss_pred EEecCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCC--ceEEEE
Q 013184 197 LAVRDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMER--FQLSKH 274 (448)
Q Consensus 197 l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~--~~~~~~ 274 (448)
+...|+-+|.++..|-+ +.+++.+..... -+.....-.+..+.|...|.-...+++.++ ..-.+|++.. .+.+..
T Consensus 32 i~p~grdi~lAsr~gl~-i~dld~p~~ppr-~l~h~tpw~vad~qws~h~a~~~wiVsts~-qkaiiwnlA~ss~~aIef 108 (1081)
T KOG0309|consen 32 INPSGRDIVLASRQGLY-IIDLDDPFTPPR-WLHHITPWQVADVQWSPHPAKPYWIVSTSN-QKAIIWNLAKSSSNAIEF 108 (1081)
T ss_pred eccccchhhhhhhcCeE-EEeccCCCCCce-eeeccCcchhcceecccCCCCceeEEecCc-chhhhhhhhcCCccceEE
Confidence 33467778888888864 557766553211 111112223344555444444434555554 4455898753 233333
Q ss_pred e--ecCCCeeEEEECC-CCCEEEEEecCCcEEEEECCCCc-eeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 013184 275 F--SFPWPVNHTSLSP-DGKLLVIVGDNPEGILVDSQTGK-AIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVR 350 (448)
Q Consensus 275 ~--~~~~~v~~~~~sp-~~~~l~~~~~d~~i~i~d~~~~~-~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~ 350 (448)
+ .|...|+.+.|+| ....+++++.|..+..||+++.. ++..+..-......+.|+--...++..+..+.|++||.|
T Consensus 109 ~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r 188 (1081)
T KOG0309|consen 109 VLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLR 188 (1081)
T ss_pred EEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEecc
Confidence 2 2888999999999 55688999999999999999865 455555445556789998744444455667789999999
Q ss_pred CCCcceEEEccCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCCc-eeeeeecCcCceEEEEEccCCCeEE
Q 013184 351 NLSKSVAVLKGNLGAIRSIRFTSD-GNFMAMAEPADFVHVYDAKNGF-EKEQEIDFFGEISGMTFSPDTEALF 421 (448)
Q Consensus 351 ~~~~~~~~~~~~~~~v~~l~~sp~-g~~l~s~~~d~~v~vwd~~~~~-~~~~~~~~~~~v~~~~fspdg~~L~ 421 (448)
.++.++..+++|...|+.+.|..- -..+.+.+.|++|+.||..... ..........+|+--.+.|-|+-.+
T Consensus 189 ~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~ 261 (1081)
T KOG0309|consen 189 KGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYC 261 (1081)
T ss_pred CCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeE
Confidence 988999999999999999998753 2456788899999999976432 2223334456777778888665444
No 300
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.66 E-value=1.2e-05 Score=73.11 Aligned_cols=214 Identities=17% Similarity=0.158 Sum_probs=131.8
Q ss_pred CCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEeecCCCeeEEEECCC
Q 013184 210 QGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFSFPWPVNHTSLSPD 289 (448)
Q Consensus 210 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~ 289 (448)
+|+|.++|..+++......+.......+.. . .+.++ .+++++.++.|..||..+|+.+..+..+.++.... ...
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~---~~~~~-~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~ 75 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-A---VPDGG-RVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVD 75 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-E---EEETT-EEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-E---EEeCC-EEEEEcCCCEEEEEECCCCCEEEEeecccccccee-eec
Confidence 678888888766654433331112222211 1 12344 67777899999999999999998888655543332 224
Q ss_pred CCEEEEEecCCcEEEEECCCCceeEee-ecCC---CcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCC
Q 013184 290 GKLLVIVGDNPEGILVDSQTGKAIMPL-CGHL---DFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGA 365 (448)
Q Consensus 290 ~~~l~~~~~d~~i~i~d~~~~~~~~~l-~~h~---~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 365 (448)
+..++++..++.+..+|..+|+.+... .... ...........+..++.+..++.|..+|+++ ++.+-........
T Consensus 76 ~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t-G~~~w~~~~~~~~ 154 (238)
T PF13360_consen 76 GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKT-GKLLWKYPVGEPR 154 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTT-TEEEEEEESSTT-
T ss_pred ccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCC-CcEEEEeecCCCC
Confidence 667777778889999999999998874 3221 1112222222478888888899999999987 7776665543322
Q ss_pred ----------eEEEEEcCCCCEEEEEeCCCe-EEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEecCCcceEEE
Q 013184 366 ----------IRSIRFTSDGNFMAMAEPADF-VHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDRTYGSLLQ 434 (448)
Q Consensus 366 ----------v~~l~~sp~g~~l~s~~~d~~-v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~~~~ll~ 434 (448)
+..-....++ .+..+..++. +.+ |+.+++.+.... ...+..+ ..+++..|++++.+ +.+..
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~---~~l~~ 226 (238)
T PF13360_consen 155 GSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP--ISGIYSL-PSVDGGTLYVTSSD---GRLYA 226 (238)
T ss_dssp SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC--SS-ECEC-EECCCTEEEEEETT---TEEEE
T ss_pred CCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec--CCCccCC-ceeeCCEEEEEeCC---CEEEE
Confidence 1222223345 6666676774 555 999998664322 2333331 45678888888754 55555
Q ss_pred Eecc
Q 013184 435 YNRC 438 (448)
Q Consensus 435 ~~~~ 438 (448)
++..
T Consensus 227 ~d~~ 230 (238)
T PF13360_consen 227 LDLK 230 (238)
T ss_dssp EETT
T ss_pred EECC
Confidence 5543
No 301
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.64 E-value=3.4e-05 Score=70.88 Aligned_cols=179 Identities=17% Similarity=0.129 Sum_probs=124.3
Q ss_pred CCCCCeeEEEEeCCCc-EEEEecCCceEEEEeecCCC---eeEEEECCCCCEEEEEe-----cCCcEEEEECC-CCceeE
Q 013184 245 SPSGGIHFMASNNDCG-VRDFDMERFQLSKHFSFPWP---VNHTSLSPDGKLLVIVG-----DNPEGILVDSQ-TGKAIM 314 (448)
Q Consensus 245 ~~~~~~~l~s~s~dg~-v~iwd~~~~~~~~~~~~~~~---v~~~~~sp~~~~l~~~~-----~d~~i~i~d~~-~~~~~~ 314 (448)
+|.....++.+-.-|+ +.+||..+++....+..+.. --.-.|||+|++|++.- ..|.|-|||.. +-+.+.
T Consensus 13 ~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~ 92 (305)
T PF07433_consen 13 HPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIG 92 (305)
T ss_pred CCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEe
Confidence 6766656777766654 67899999998877762211 22678999999999874 45789999998 667788
Q ss_pred eeecCCCcEEEEEEcCCCCEEEEEeC------------------CCcEEEEEccCCCcceEE--E--ccCCCCeEEEEEc
Q 013184 315 PLCGHLDFSFASAWHPDGRIFATGNQ------------------DKTCRVWDVRNLSKSVAV--L--KGNLGAIRSIRFT 372 (448)
Q Consensus 315 ~l~~h~~~v~~~~~~p~g~~l~s~~~------------------d~~i~iwd~~~~~~~~~~--~--~~~~~~v~~l~~s 372 (448)
.+..|.-....+.+.|||+.|+.++. +.++.+.|.++ +..+.. + .-|.-.|+.|++.
T Consensus 93 E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~s-G~ll~q~~Lp~~~~~lSiRHLa~~ 171 (305)
T PF07433_consen 93 EFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARS-GALLEQVELPPDLHQLSIRHLAVD 171 (305)
T ss_pred EecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCC-CceeeeeecCccccccceeeEEec
Confidence 88888777778999999988888752 23455566655 555544 4 2366789999999
Q ss_pred CCCCEEEEEeCCC-------eEEEEECCCCceeeee-----ecCcCceEEEEEccCCCeEEEEE
Q 013184 373 SDGNFMAMAEPAD-------FVHVYDAKNGFEKEQE-----IDFFGEISGMTFSPDTEALFIGV 424 (448)
Q Consensus 373 p~g~~l~s~~~d~-------~v~vwd~~~~~~~~~~-----~~~~~~v~~~~fspdg~~L~~~~ 424 (448)
++|..++..-..| .|-+++-......... ....+.+-+|+++++|..+++++
T Consensus 172 ~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~ts 235 (305)
T PF07433_consen 172 GDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTS 235 (305)
T ss_pred CCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEEC
Confidence 9998766553332 3555553332111111 23457899999999999888764
No 302
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.64 E-value=1.7e-05 Score=80.35 Aligned_cols=206 Identities=15% Similarity=0.082 Sum_probs=134.7
Q ss_pred eeEEEEecCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCC-----cEEEEecC
Q 013184 193 QVSTLAVRDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDC-----GVRDFDME 267 (448)
Q Consensus 193 ~i~~l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg-----~v~iwd~~ 267 (448)
.|+|++..+..+|.|+.+|.|.+.+-. - .....+.....+++..+ +.-++...|++.+.|+ .|+||+++
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln~s--~-~~~~~fqa~~~siv~~L---~~~~~~~~L~sv~Ed~~~np~llkiw~le 100 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILNSS--F-QLIRGFQAYEQSIVQFL---YILNKQNFLFSVGEDEQGNPVLLKIWDLE 100 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEeccc--c-eeeehheecchhhhhHh---hcccCceEEEEEeecCCCCceEEEEeccc
Confidence 588999999999999999987665422 1 21122222222233333 3345545777766654 48999986
Q ss_pred Cc------eEE---EEee-----cCCCeeEEEECCCCCEEEEEecCCcEEEEECC--C--CceeEeeecCCCcEEEEEEc
Q 013184 268 RF------QLS---KHFS-----FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQ--T--GKAIMPLCGHLDFSFASAWH 329 (448)
Q Consensus 268 ~~------~~~---~~~~-----~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~--~--~~~~~~l~~h~~~v~~~~~~ 329 (448)
.- ++. +.+. .+.++.+++.+.+-+.+|+|-.+|.|..+.-. . |....-...-..+|+.+++.
T Consensus 101 k~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~ 180 (933)
T KOG2114|consen 101 KVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALR 180 (933)
T ss_pred ccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEe
Confidence 42 233 2233 25678899999999999999999999987421 1 11111122245789999999
Q ss_pred CCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeee-cCc
Q 013184 330 PDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEI-DFF 405 (448)
Q Consensus 330 p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~ 405 (448)
.++..++-...-..|.+|.+.........+..|..+++|..|++....+++|+.. .|.+|+........++. +|.
T Consensus 181 ~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e-~l~fY~sd~~~~cfaf~~g~k 256 (933)
T KOG2114|consen 181 SDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSE-FLYFYDSDGRGPCFAFEVGEK 256 (933)
T ss_pred cCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCc-eEEEEcCCCcceeeeecCCCe
Confidence 9888744444455799999975332355588888899999998755546665544 69999977554444444 443
No 303
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.62 E-value=3.7e-07 Score=79.81 Aligned_cols=152 Identities=16% Similarity=0.152 Sum_probs=97.1
Q ss_pred eEEEEecCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEE-----eCCCcEEEEecCC
Q 013184 194 VSTLAVRDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMAS-----NNDCGVRDFDMER 268 (448)
Q Consensus 194 i~~l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-----s~dg~v~iwd~~~ 268 (448)
-..++..++.+++++.||.+.+.+.+. -...-.++...+.+.. ..++ ...++ .+.++ ..-+..+.|++..
T Consensus 94 ~~~~s~~~t~V~~~~~dg~~~v~s~~~-~~~~~~~i~~~~~~~a-s~~~--~~~~~-~i~s~~~g~~n~~d~~~a~~~~p 168 (319)
T KOG4714|consen 94 NDACTMTDNRVCIGYADGSLAVFSTDK-DLALMSRIPSIHSGSA-SRKI--CRHGN-SILSGGCGNWNAQDNFYANTLDP 168 (319)
T ss_pred cccccccCCceEecCCCceEEEEechH-HHhhhhhccccccccc-ccce--eeccc-EEecCCcceEeeccceeeecccc
Confidence 355566788899999999999998765 2111111111111110 1111 11121 22221 1223455666543
Q ss_pred ceEEE-EeecCCCeeEEEECC-CCCEEEEEecCCcEEEEECCCCce-eEeeecCCCcEEEEEEcC-CCCEEEEEeCCCcE
Q 013184 269 FQLSK-HFSFPWPVNHTSLSP-DGKLLVIVGDNPEGILVDSQTGKA-IMPLCGHLDFSFASAWHP-DGRIFATGNQDKTC 344 (448)
Q Consensus 269 ~~~~~-~~~~~~~v~~~~~sp-~~~~l~~~~~d~~i~i~d~~~~~~-~~~l~~h~~~v~~~~~~p-~g~~l~s~~~d~~i 344 (448)
.+... .......|.+++-+| +..++++|+.+|.+-+||.+.... ...+..|+.++..+-|+| ++..|++++.||.+
T Consensus 169 ~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGsl 248 (319)
T KOG4714|consen 169 IKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSL 248 (319)
T ss_pred cccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcE
Confidence 33211 112233499999999 556777888999999999988754 345678999999999999 77899999999999
Q ss_pred EEEEcc
Q 013184 345 RVWDVR 350 (448)
Q Consensus 345 ~iwd~~ 350 (448)
--||..
T Consensus 249 w~wdas 254 (319)
T KOG4714|consen 249 WHWDAS 254 (319)
T ss_pred EEEcCC
Confidence 999986
No 304
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.61 E-value=1.4e-06 Score=87.38 Aligned_cols=163 Identities=19% Similarity=0.191 Sum_probs=121.4
Q ss_pred CeeEEEEeCCCcEEEEecCCceEEEEeecCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEE
Q 013184 249 GIHFMASNNDCGVRDFDMERFQLSKHFSFPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAW 328 (448)
Q Consensus 249 ~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~ 328 (448)
...|+.|+.+|.|++++....- ...+.|... ..+|.++++|+.||+|.|..+-+.+...++. ...++.++++
T Consensus 49 ~~~~~~GtH~g~v~~~~~~~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial 120 (846)
T KOG2066|consen 49 DKFFALGTHRGAVYLTTCQGNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIAL 120 (846)
T ss_pred cceeeeccccceEEEEecCCcc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEe
Confidence 4589999999999999986443 333444332 5589999999999999999998888877665 4578899999
Q ss_pred cCC-----CCEEEEEeCCCcEEEEEccCCCcceE-EEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeee
Q 013184 329 HPD-----GRIFATGNQDKTCRVWDVRNLSKSVA-VLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEI 402 (448)
Q Consensus 329 ~p~-----g~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~ 402 (448)
+|+ .+.+++|+.-| +.++.-+-.+.... .+....|+|.+++|. |.++|-++..| |+|||+.+++.+..+.
T Consensus 121 ~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~ 196 (846)
T KOG2066|consen 121 HPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIP 196 (846)
T ss_pred ccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccC
Confidence 998 46899999998 77776543333222 466778999999995 78999998888 9999999887765443
Q ss_pred cCcC------ceEEEEEccCCCeEEEEE
Q 013184 403 DFFG------EISGMTFSPDTEALFIGV 424 (448)
Q Consensus 403 ~~~~------~v~~~~fspdg~~L~~~~ 424 (448)
.... ....+.|.++. .|++|=
T Consensus 197 ~p~~~~R~e~fpphl~W~~~~-~LVIGW 223 (846)
T KOG2066|consen 197 PPSQSVRPELFPPHLHWQDED-RLVIGW 223 (846)
T ss_pred CCCCCCCcccCCCceEecCCC-eEEEec
Confidence 3212 24568888764 455553
No 305
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.61 E-value=5.1e-05 Score=74.71 Aligned_cols=252 Identities=15% Similarity=0.121 Sum_probs=148.4
Q ss_pred CCeEEEec-CCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEecCCEEEEEeCCCeEEEEEcCCCC
Q 013184 144 KHDVYLMS-HFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAVRDNLLIAGGFQGELICKYLDQPG 222 (448)
Q Consensus 144 ~~~v~~~~-~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~~~~~lvsg~~dg~i~vw~~~~~~ 222 (448)
.+.||+.. ++.+..+|..+++..=...+.+.. ..+-.+.+..++.+..+|.|..+|..+++
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~------------------~ssP~v~~~~v~v~~~~g~l~ald~~tG~ 181 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEA------------------LSRPVVSDGLVLVHTSNGMLQALNESDGA 181 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCce------------------ecCCEEECCEEEEECCCCEEEEEEccCCC
Confidence 45677664 567888888776654433333211 11112245667778889999999988877
Q ss_pred ceeEEEeecCC---CCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEeecCCC--------eeEEEECC--C
Q 013184 223 VSFCSRTTYDE---NAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFSFPWP--------VNHTSLSP--D 289 (448)
Q Consensus 223 ~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~--------v~~~~~sp--~ 289 (448)
........... ......+ + .+. .++.++.++.+..+|.++++.+.......+ ...+..+| .
T Consensus 182 ~~W~~~~~~~~~~~~~~~sP~-v----~~~-~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~ 255 (394)
T PRK11138 182 VKWTVNLDVPSLTLRGESAPA-T----AFG-GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVV 255 (394)
T ss_pred EeeeecCCCCcccccCCCCCE-E----ECC-EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEE
Confidence 54333221100 0000011 1 122 466677889999999999987766542111 11122233 3
Q ss_pred CCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCC-CCeEE
Q 013184 290 GKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNL-GAIRS 368 (448)
Q Consensus 290 ~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~~v~~ 368 (448)
+..+++++.++.+..+|..+|+.+..... .....+.. .+..|+.++.++.+..+|..+ ++.+-...... ....+
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~--~~~~~~~~--~~~~vy~~~~~g~l~ald~~t-G~~~W~~~~~~~~~~~s 330 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKREY--GSVNDFAV--DGGRIYLVDQNDRVYALDTRG-GVELWSQSDLLHRLLTA 330 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEeecC--CCccCcEE--ECCEEEEEcCCCeEEEEECCC-CcEEEcccccCCCcccC
Confidence 56777888899999999999987755431 11111222 456777788899999999976 44432221111 11122
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceE-EEEEccCCCeEEEEEecCC
Q 013184 369 IRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEIS-GMTFSPDTEALFIGVWDRT 428 (448)
Q Consensus 369 l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~-~~~fspdg~~L~~~~~D~~ 428 (448)
... .+.+|+.++.+|.|++.|..+|+.+.+..-....+. +..+ .+..|++++.||.
T Consensus 331 p~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~ 387 (394)
T PRK11138 331 PVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGT 387 (394)
T ss_pred CEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCce
Confidence 222 256778889999999999999988766543322222 2333 2457888888854
No 306
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.60 E-value=3.1e-06 Score=74.46 Aligned_cols=166 Identities=10% Similarity=-0.030 Sum_probs=113.8
Q ss_pred eEEEEeCCCcEEEEecCCceEEEEeecCCCeeEEEECC----CCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEE
Q 013184 251 HFMASNNDCGVRDFDMERFQLSKHFSFPWPVNHTSLSP----DGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFAS 326 (448)
Q Consensus 251 ~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp----~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~ 326 (448)
+|+.|+..|...+|.+.+.+....+- ....+.+.+.. ..--+..++.|.++++.++.-+.....+....-.+.++
T Consensus 86 ~la~gG~~g~fd~~~~~tn~~h~~~c-d~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~ 164 (344)
T KOG4532|consen 86 TLADGGASGQFDLFACNTNDGHLYQC-DVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSL 164 (344)
T ss_pred EEEeccccceeeeecccCcccceeee-cccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceeee
Confidence 78889899999999998765332222 11112222211 12245667788888888765443322221111237899
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEccCCCcceEE--EccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCcee-----e
Q 013184 327 AWHPDGRIFATGNQDKTCRVWDVRNLSKSVAV--LKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEK-----E 399 (448)
Q Consensus 327 ~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~--~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~-----~ 399 (448)
+++|+++++++.+....|-.|.+...+.-+.. .......-.+..|+.....+|++..||++.|||++....+ .
T Consensus 165 ~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~ss 244 (344)
T KOG4532|consen 165 HYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISS 244 (344)
T ss_pred EEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcc
Confidence 99999999999999999999999764443322 3333445578899999999999999999999999875433 2
Q ss_pred eeecCcCceEEEEEccCC
Q 013184 400 QEIDFFGEISGMTFSPDT 417 (448)
Q Consensus 400 ~~~~~~~~v~~~~fspdg 417 (448)
+-..|.|.+..+.|+|-|
T Consensus 245 trp~hnGa~R~c~Fsl~g 262 (344)
T KOG4532|consen 245 TRPHHNGAFRVCRFSLYG 262 (344)
T ss_pred cCCCCCCceEEEEecCCC
Confidence 334588999999999865
No 307
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.59 E-value=1.7e-07 Score=58.96 Aligned_cols=38 Identities=34% Similarity=0.649 Sum_probs=36.2
Q ss_pred cceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 013184 354 KSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYD 391 (448)
Q Consensus 354 ~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd 391 (448)
+++..+.+|.++|++++|+|++.+|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 56789999999999999999999999999999999997
No 308
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.58 E-value=8.2e-05 Score=68.44 Aligned_cols=175 Identities=21% Similarity=0.226 Sum_probs=118.9
Q ss_pred eCCCCCeeEEEE----eCCCcEEEEecC-CceEEEEee-cCCCeeEEEECCCCCEEEEEe------------------cC
Q 013184 244 NSPSGGIHFMAS----NNDCGVRDFDME-RFQLSKHFS-FPWPVNHTSLSPDGKLLVIVG------------------DN 299 (448)
Q Consensus 244 ~~~~~~~~l~s~----s~dg~v~iwd~~-~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~------------------~d 299 (448)
++++|..++++- +..|.|-|||.. +.+.+..+. +.-....+.+.|+|+.|+++- .+
T Consensus 58 fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~ 137 (305)
T PF07433_consen 58 FSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQ 137 (305)
T ss_pred EcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcC
Confidence 489998444442 335889999998 677777777 555667788999998888762 23
Q ss_pred CcEEEEECCCCceeEe--e--ecCCCcEEEEEEcCCCCEEEEEeCCC-------cEEEEEccCCCcceEEEc-------c
Q 013184 300 PEGILVDSQTGKAIMP--L--CGHLDFSFASAWHPDGRIFATGNQDK-------TCRVWDVRNLSKSVAVLK-------G 361 (448)
Q Consensus 300 ~~i~i~d~~~~~~~~~--l--~~h~~~v~~~~~~p~g~~l~s~~~d~-------~i~iwd~~~~~~~~~~~~-------~ 361 (448)
..+.+.|..+|+.+.+ + .-|...+..+++.++|..++..=..| -|-+++. +..+..+. .
T Consensus 138 psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~---g~~~~~~~~p~~~~~~ 214 (305)
T PF07433_consen 138 PSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR---GGALRLLPAPEEQWRR 214 (305)
T ss_pred CceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC---CCcceeccCChHHHHh
Confidence 4567778889988776 4 23778899999999987554432222 1333333 22222222 2
Q ss_pred CCCCeEEEEEcCCCCEEEEEeC-CCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEE
Q 013184 362 NLGAIRSIRFTSDGNFMAMAEP-ADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGV 424 (448)
Q Consensus 362 ~~~~v~~l~~sp~g~~l~s~~~-d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~ 424 (448)
-.+.+-+|+++++|.++++.+. .+.+.+||..++..+.... -..+.+++-.+++ ++++.+
T Consensus 215 l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~--l~D~cGva~~~~~-f~~ssG 275 (305)
T PF07433_consen 215 LNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP--LPDACGVAPTDDG-FLVSSG 275 (305)
T ss_pred hCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc--cCceeeeeecCCc-eEEeCC
Confidence 2357889999999998877665 5689999999998775443 2346778877776 555543
No 309
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=5.4e-07 Score=84.46 Aligned_cols=200 Identities=16% Similarity=0.170 Sum_probs=136.9
Q ss_pred eEEEEe-cCCEEEEEeCCCeEEEEEcCC-CCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeC-CCcEEEEecCCce
Q 013184 194 VSTLAV-RDNLLIAGGFQGELICKYLDQ-PGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNN-DCGVRDFDMERFQ 270 (448)
Q Consensus 194 i~~l~~-~~~~lvsg~~dg~i~vw~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~-dg~v~iwd~~~~~ 270 (448)
|+-+.+ ..+++++++.||.++.|.-.. .+..+... ...|.+.+.+++. +-++ .++.+.+. |..++++|++...
T Consensus 12 i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKh-FraHL~~I~sl~~--S~dg-~L~~Sv~d~Dhs~KvfDvEn~D 87 (558)
T KOG0882|consen 12 ITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKH-FRAHLGVILSLAV--SYDG-WLFRSVEDPDHSVKVFDVENFD 87 (558)
T ss_pred eeeEeeehhheEEeeecchhhhhcCCCCccceeehhh-hHHHHHHHHhhhc--cccc-eeEeeccCcccceeEEEeeccc
Confidence 444444 779999999999999998766 33332222 2234444445544 4444 47777677 9999999999877
Q ss_pred EEEEee---cCCCeeEEEECC-CCC-EEEEE-ecCCcEEEEECCCCc--eeEeeecCCCcEEEEEEcCCCCEEEEEeCCC
Q 013184 271 LSKHFS---FPWPVNHTSLSP-DGK-LLVIV-GDNPEGILVDSQTGK--AIMPLCGHLDFSFASAWHPDGRIFATGNQDK 342 (448)
Q Consensus 271 ~~~~~~---~~~~v~~~~~sp-~~~-~l~~~-~~d~~i~i~d~~~~~--~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~ 342 (448)
.+..++ .++.+..+. +| +.. ++++. -.++.+.++|-.... ....-.-|..+|..+.+.|-+..+++....|
T Consensus 88 minmiKL~~lPg~a~wv~-skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~g 166 (558)
T KOG0882|consen 88 MINMIKLVDLPGFAEWVT-SKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISG 166 (558)
T ss_pred hhhhcccccCCCceEEec-CCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccc
Confidence 665555 344433322 22 222 33333 368899999976543 2333345999999999999999999999999
Q ss_pred cEEEEEccCC----Cc-c---------eEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCcee
Q 013184 343 TCRVWDVRNL----SK-S---------VAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEK 398 (448)
Q Consensus 343 ~i~iwd~~~~----~~-~---------~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~ 398 (448)
.|.-|..... .. . +..+........++.|+|+|..+++-+.|..|+++++++|+.+
T Consensus 167 mVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklv 236 (558)
T KOG0882|consen 167 MVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLV 236 (558)
T ss_pred eeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhh
Confidence 9999988620 01 1 1112223345789999999999999999999999999988643
No 310
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.52 E-value=1.6e-05 Score=83.37 Aligned_cols=198 Identities=15% Similarity=0.192 Sum_probs=132.4
Q ss_pred CCCCCeeEEEEeCCCcEEEEecCCceEEEEeecCCCeeEEEECCCCCEEEEEecCCcEEEEEC----CCC----------
Q 013184 245 SPSGGIHFMASNNDCGVRDFDMERFQLSKHFSFPWPVNHTSLSPDGKLLVIVGDNPEGILVDS----QTG---------- 310 (448)
Q Consensus 245 ~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~----~~~---------- 310 (448)
..++. .++.+...|.|.+-|.++......-.....|.+++||||...++..+..+++.+-.- -..
T Consensus 77 l~d~~-~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~ 155 (1265)
T KOG1920|consen 77 LADTN-SICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERK 155 (1265)
T ss_pred ecccc-eEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccc
Confidence 34443 567777788999999988776555556788999999999999999988877766432 111
Q ss_pred ---------ceeEeeecCC---------------------CcEEEEEEcCCCCEEEEEe-----CCCcEEEEEccCCCcc
Q 013184 311 ---------KAIMPLCGHL---------------------DFSFASAWHPDGRIFATGN-----QDKTCRVWDVRNLSKS 355 (448)
Q Consensus 311 ---------~~~~~l~~h~---------------------~~v~~~~~~p~g~~l~s~~-----~d~~i~iwd~~~~~~~ 355 (448)
+....+.|.. +.=.++.|.-||.++|+.. ..+.|++||.. +..
T Consensus 156 sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE--g~L 233 (1265)
T KOG1920|consen 156 SKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE--GAL 233 (1265)
T ss_pred cccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc--chh
Confidence 1111222110 1123589999999999843 33789999975 332
Q ss_pred eEEEccCCCCeEEEEEcCCCCEEEEEe---CCCeEEEEECCCCceeee----eecCcCceEEEEEccCCCeEEEEEecCC
Q 013184 356 VAVLKGNLGAIRSIRFTSDGNFMAMAE---PADFVHVYDAKNGFEKEQ----EIDFFGEISGMTFSPDTEALFIGVWDRT 428 (448)
Q Consensus 356 ~~~~~~~~~~v~~l~~sp~g~~l~s~~---~d~~v~vwd~~~~~~~~~----~~~~~~~v~~~~fspdg~~L~~~~~D~~ 428 (448)
-..-....+--.+++|-|.|..+|+-- .++.|.+|. ++|-.... ...-..+|..++|+.++..|++-..+..
T Consensus 234 ns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffE-rNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e 312 (1265)
T KOG1920|consen 234 NSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFE-RNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLE 312 (1265)
T ss_pred hcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEe-cCCccccccccCCcccccchheeeecCCCCceeeeecccc
Confidence 222222333446799999999988753 455799998 55543321 2222345999999999999999777766
Q ss_pred cceEEEEecccceEeccc
Q 013184 429 YGSLLQYNRCRNYTYLDT 446 (448)
Q Consensus 429 ~~~ll~~~~~~~~~~l~~ 446 (448)
...+.-|..++...||+.
T Consensus 313 ~~~v~lwt~~NyhWYLKq 330 (1265)
T KOG1920|consen 313 NSLVQLWTTGNYHWYLKQ 330 (1265)
T ss_pred cceEEEEEecCeEEEEEE
Confidence 555666666666777764
No 311
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.52 E-value=1.4e-05 Score=78.12 Aligned_cols=88 Identities=26% Similarity=0.400 Sum_probs=69.6
Q ss_pred EEEecCCceEE----EEeecCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEE
Q 013184 262 RDFDMERFQLS----KHFSFPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFAT 337 (448)
Q Consensus 262 ~iwd~~~~~~~----~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s 337 (448)
.+|++...++. ..+..+..|.|++++|+...++.|+.||.|.+||...+... +....-.++.++|||+|..|++
T Consensus 239 ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V 316 (545)
T PF11768_consen 239 CIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVV 316 (545)
T ss_pred EEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEE
Confidence 35565544432 23447889999999999999999999999999998776433 2223445678999999999999
Q ss_pred EeCCCcEEEEEccC
Q 013184 338 GNQDKTCRVWDVRN 351 (448)
Q Consensus 338 ~~~d~~i~iwd~~~ 351 (448)
|+..|.+.+||+.-
T Consensus 317 ~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 317 GSEQGELQCFDMAL 330 (545)
T ss_pred EcCCceEEEEEeec
Confidence 99999999999864
No 312
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.51 E-value=3.8e-06 Score=82.42 Aligned_cols=179 Identities=15% Similarity=0.157 Sum_probs=117.9
Q ss_pred CCCCCeeEEEEeCC---CcEEEEecCCceEEEEeecCCCeeEEEECCCCCEEEEEe-cCC--cEEEEECCCCceeEeeec
Q 013184 245 SPSGGIHFMASNND---CGVRDFDMERFQLSKHFSFPWPVNHTSLSPDGKLLVIVG-DNP--EGILVDSQTGKAIMPLCG 318 (448)
Q Consensus 245 ~~~~~~~l~s~s~d---g~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~--~i~i~d~~~~~~~~~l~~ 318 (448)
+|++..+....-.. ..+.++++.+++........+.-...+|+|+|+.|+.+. .++ .|.++|+.++... .+..
T Consensus 201 s~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~-~Lt~ 279 (425)
T COG0823 201 SPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLP-RLTN 279 (425)
T ss_pred CcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcce-eccc
Confidence 67766544443322 358999999988877777777777889999999988775 344 5677788777643 3443
Q ss_pred CCCcEEEEEEcCCCCEEEEEe-CCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCC-Ce--EEEEECCC
Q 013184 319 HLDFSFASAWHPDGRIFATGN-QDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPA-DF--VHVYDAKN 394 (448)
Q Consensus 319 h~~~v~~~~~~p~g~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d-~~--v~vwd~~~ 394 (448)
-.+.-..-.|+|+|++|+-.+ ..|.-.||-....+..+..++...+.-....|||+|++|+..+.. |. |.+.|+.+
T Consensus 280 ~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~ 359 (425)
T COG0823 280 GFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLAS 359 (425)
T ss_pred CCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCC
Confidence 333333668999999777654 455555555443355555555555444478999999999988743 33 77777776
Q ss_pred CceeeeeecCcCceEEEEEccCCCeEEEEEe
Q 013184 395 GFEKEQEIDFFGEISGMTFSPDTEALFIGVW 425 (448)
Q Consensus 395 ~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~ 425 (448)
+.. .+...........+|.|+|+.+...+.
T Consensus 360 ~~~-~~~lt~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 360 GGK-IRILTSTYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred CCc-EEEccccccCCCCCcCCCCceEEEecc
Confidence 654 333334445556778888877765543
No 313
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.50 E-value=1e-07 Score=95.84 Aligned_cols=209 Identities=14% Similarity=0.160 Sum_probs=142.0
Q ss_pred eeEEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCC-cEEEEecCC-
Q 013184 193 QVSTLAV--RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDC-GVRDFDMER- 268 (448)
Q Consensus 193 ~i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg-~v~iwd~~~- 268 (448)
..+|+++ ..+.|++|+..|+|+++++.++.-. .....|+..+..+.- +.+|...|.+++... -..+|++..
T Consensus 1103 ~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e---~s~ncH~SavT~veP--s~dgs~~Ltsss~S~PlsaLW~~~s~ 1177 (1516)
T KOG1832|consen 1103 LFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSME---ESVNCHQSAVTLVEP--SVDGSTQLTSSSSSSPLSALWDASST 1177 (1516)
T ss_pred ceeeEEeecCCceEEeeeccceEEEEEccCcccc---ccccccccccccccc--cCCcceeeeeccccCchHHHhccccc
Confidence 4677777 7799999999999999999876532 122234444444433 667776676666655 567899854
Q ss_pred ceEEEEeecCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEee-ec---CCCcEEEEEEcCCCCEEEEEeCCCcE
Q 013184 269 FQLSKHFSFPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPL-CG---HLDFSFASAWHPDGRIFATGNQDKTC 344 (448)
Q Consensus 269 ~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l-~~---h~~~v~~~~~~p~g~~l~s~~~d~~i 344 (448)
+.....|. .-.++.|+.....-+.|.....+.+||++|+..+.++ .+ ....-.+..|+|+..+++ .||
T Consensus 1178 ~~~~Hsf~---ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---ndG-- 1249 (1516)
T KOG1832|consen 1178 GGPRHSFD---EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---NDG-- 1249 (1516)
T ss_pred cCcccccc---ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---eCc--
Confidence 44555544 2357788876555566666668999999999877663 22 122235678999888776 355
Q ss_pred EEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEE
Q 013184 345 RVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIG 423 (448)
Q Consensus 345 ~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~ 423 (448)
.+||+|. ...++.+......+ .=.|+|.|.-++.-+ -|||+++-+.++..+... -..+.|+..|..++..
T Consensus 1250 vLWDvR~-~~aIh~FD~ft~~~-~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~Ld--qc~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1250 VLWDVRI-PEAIHRFDQFTDYG-GGGFHPSGNEVIINS-----EIWDMRTFKLLHSVPSLD--QCAVTFNSTGDVMYAM 1319 (1516)
T ss_pred eeeeecc-HHHHhhhhhheecc-cccccCCCceEEeec-----hhhhhHHHHHHhcCcccc--ceEEEeccCccchhhh
Confidence 6899997 56666665443222 236999999888755 399999987776655432 2567888888877654
No 314
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.47 E-value=5.7e-05 Score=75.76 Aligned_cols=231 Identities=12% Similarity=0.091 Sum_probs=159.6
Q ss_pred CCCCeEEEecCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--------------cCCEEEEE
Q 013184 142 TSKHDVYLMSHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--------------RDNLLIAG 207 (448)
Q Consensus 142 ~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--------------~~~~lvsg 207 (448)
...+.+.|++...|.+-|..+-+....+..+. ..|+.+.+ ..-+|+++
T Consensus 24 ~~~GLiAygshslV~VVDs~s~q~iqsie~h~------------------s~V~~VrWap~~~p~~llS~~~~~lliAsa 85 (1062)
T KOG1912|consen 24 SPSGLIAYGSHSLVSVVDSRSLQLIQSIELHQ------------------SAVTSVRWAPAPSPRDLLSPSSSQLLIASA 85 (1062)
T ss_pred CccceEEEecCceEEEEehhhhhhhhccccCc------------------cceeEEEeccCCCchhccCccccceeEEec
Confidence 44556888888888888876544444333321 12333333 22467888
Q ss_pred eCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCC-eeEEEEeCCCcEEEEecCCceEEEEee-cCCCeeEEE
Q 013184 208 GFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGG-IHFMASNNDCGVRDFDMERFQLSKHFS-FPWPVNHTS 285 (448)
Q Consensus 208 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~ 285 (448)
...|.|.+||....... .-..++...+..++|++..+.. ..|++-....+|.+|+..+|+...... ......|+.
T Consensus 86 D~~GrIil~d~~~~s~~---~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~ 162 (1062)
T KOG1912|consen 86 DISGRIILVDFVLASVI---NWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFR 162 (1062)
T ss_pred cccCcEEEEEehhhhhh---hhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeee
Confidence 89999999998776532 2234556667888888877766 456666667899999999999988887 445567799
Q ss_pred ECC-CCCEEEEEecCCcEEEEECC-------CCceeEeeecCCC-------------------------cEEEEEEcCCC
Q 013184 286 LSP-DGKLLVIVGDNPEGILVDSQ-------TGKAIMPLCGHLD-------------------------FSFASAWHPDG 332 (448)
Q Consensus 286 ~sp-~~~~l~~~~~d~~i~i~d~~-------~~~~~~~l~~h~~-------------------------~v~~~~~~p~g 332 (448)
+.| +.+.+.+.+..|.+.+.+.- .|+..+.-..|.+ +...++|+|.-
T Consensus 163 ~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~ 242 (1062)
T KOG1912|consen 163 VDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHW 242 (1062)
T ss_pred eCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhh
Confidence 999 88888888888888877642 1233332222222 01135778876
Q ss_pred CEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCC--CEEEEEeCCCeEEEEECCC
Q 013184 333 RIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDG--NFMAMAEPADFVHVYDAKN 394 (448)
Q Consensus 333 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g--~~l~s~~~d~~v~vwd~~~ 394 (448)
+.++.......+.|+|+.- ..++.+..-..+.+.-+.+-|++ ..|.+...+|.+.+|-.+.
T Consensus 243 rn~lfi~~prellv~dle~-~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 243 RNILFITFPRELLVFDLEY-ECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred hceEEEEeccceEEEcchh-hceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 6555555667799999976 77887777777777778888876 5899999999999997554
No 315
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.46 E-value=0.00017 Score=71.01 Aligned_cols=191 Identities=14% Similarity=0.131 Sum_probs=118.4
Q ss_pred EEecCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee
Q 013184 197 LAVRDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS 276 (448)
Q Consensus 197 l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~ 276 (448)
+...+..++.++.+|.+..+|..+++......... .......+ .+. .++++..++.|.-+|.++|+.+..+.
T Consensus 116 ~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~---~~~ssP~v----~~~-~v~v~~~~g~l~ald~~tG~~~W~~~ 187 (394)
T PRK11138 116 VTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG---EALSRPVV----SDG-LVLVHTSNGMLQALNESDGAVKWTVN 187 (394)
T ss_pred cEEECCEEEEEcCCCEEEEEECCCCCCcccccCCC---ceecCCEE----ECC-EEEEECCCCEEEEEEccCCCEeeeec
Confidence 44567778888899999999998877544333221 11111111 123 56677788999999999999988877
Q ss_pred cCCCeeEE--EECC--CCCEEEEEecCCcEEEEECCCCceeEeeecCC--C-----cEEEEEEcC--CCCEEEEEeCCCc
Q 013184 277 FPWPVNHT--SLSP--DGKLLVIVGDNPEGILVDSQTGKAIMPLCGHL--D-----FSFASAWHP--DGRIFATGNQDKT 343 (448)
Q Consensus 277 ~~~~v~~~--~~sp--~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~--~-----~v~~~~~~p--~g~~l~s~~~d~~ 343 (448)
...+...+ .-+| .+..+++++.++.+..+|..+|+.+....... . ....+.-+| .+..++.++.++.
T Consensus 188 ~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~ 267 (394)
T PRK11138 188 LDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGN 267 (394)
T ss_pred CCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCe
Confidence 43221110 1123 23467778888999999999998765543110 0 011111223 3456777778899
Q ss_pred EEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeee
Q 013184 344 CRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQ 400 (448)
Q Consensus 344 i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~ 400 (448)
+..+|+.+ ++.+-... .+....+.. .+..|..++.+|.|+.+|..+|+.+..
T Consensus 268 l~ald~~t-G~~~W~~~--~~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~ 319 (394)
T PRK11138 268 LVALDLRS-GQIVWKRE--YGSVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWS 319 (394)
T ss_pred EEEEECCC-CCEEEeec--CCCccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEc
Confidence 99999976 44443222 111112222 456777788899999999999876643
No 316
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.41 E-value=1.2e-06 Score=79.48 Aligned_cols=153 Identities=10% Similarity=0.095 Sum_probs=108.8
Q ss_pred cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCc-----eEEEE
Q 013184 200 RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERF-----QLSKH 274 (448)
Q Consensus 200 ~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~-----~~~~~ 274 (448)
.+-. ++.|.+-.+.+-++.++-.. .+ ....-+-++.+ ...++ +++.|...|.|..+|++.. .+...
T Consensus 224 ~gyh-fs~G~sqqv~L~nvetg~~q---sf--~sksDVfAlQf--~~s~n-Lv~~GcRngeI~~iDLR~rnqG~~~~a~r 294 (425)
T KOG2695|consen 224 MGYH-FSVGLSQQVLLTNVETGHQQ---SF--QSKSDVFALQF--AGSDN-LVFNGCRNGEIFVIDLRCRNQGNGWCAQR 294 (425)
T ss_pred ceee-ecccccceeEEEEeeccccc---cc--ccchhHHHHHh--cccCC-eeEecccCCcEEEEEeeecccCCCcceEE
Confidence 3434 44444555566666654321 11 12333445544 33343 8999999999999999753 46677
Q ss_pred eecCCCeeEEEECC-CCCEEEEEecCCcEEEEECCCCce---eEeeecCCCcEEEE--EEcCCCCEEEEEeCCCcEEEEE
Q 013184 275 FSFPWPVNHTSLSP-DGKLLVIVGDNPEGILVDSQTGKA---IMPLCGHLDFSFAS--AWHPDGRIFATGNQDKTCRVWD 348 (448)
Q Consensus 275 ~~~~~~v~~~~~sp-~~~~l~~~~~d~~i~i~d~~~~~~---~~~l~~h~~~v~~~--~~~p~g~~l~s~~~d~~i~iwd 348 (448)
+-|+..|+++..-. ++++|++.+.+|+|.+||.+--++ +.+..||.....-+ -.++....++++++|...|||.
T Consensus 295 lyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWs 374 (425)
T KOG2695|consen 295 LYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWS 374 (425)
T ss_pred EEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEe
Confidence 77999999998877 788999999999999999987666 88888986543333 3456667888899999999999
Q ss_pred ccCCCcceEEEccC
Q 013184 349 VRNLSKSVAVLKGN 362 (448)
Q Consensus 349 ~~~~~~~~~~~~~~ 362 (448)
++. +..+.+++..
T Consensus 375 l~~-ghLl~tipf~ 387 (425)
T KOG2695|consen 375 LDS-GHLLCTIPFP 387 (425)
T ss_pred ccc-CceeeccCCC
Confidence 987 7777776644
No 317
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.40 E-value=0.0022 Score=62.64 Aligned_cols=178 Identities=19% Similarity=0.221 Sum_probs=133.8
Q ss_pred CCCCCeeEEEEeCCCcEEEEecCCceEEEEeecCCCeeEEEECCCCCEEEEEec---CCcEEEEECCCCceeEeeecCCC
Q 013184 245 SPSGGIHFMASNNDCGVRDFDMERFQLSKHFSFPWPVNHTSLSPDGKLLVIVGD---NPEGILVDSQTGKAIMPLCGHLD 321 (448)
Q Consensus 245 ~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---d~~i~i~d~~~~~~~~~l~~h~~ 321 (448)
++.+.+.++....+..|.+.|..+.+.............++++|+++.+.++.. ++.+.+.|..+++.+.....-..
T Consensus 82 ~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~ 161 (381)
T COG3391 82 NPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNT 161 (381)
T ss_pred CCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCC
Confidence 777877777777789999999988888887775557789999999988888765 68999999999998887554334
Q ss_pred cEEEEEEcCCCCEEEEEe-CCCcEEEEEccCCCcceE-----EEccCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEEC
Q 013184 322 FSFASAWHPDGRIFATGN-QDKTCRVWDVRNLSKSVA-----VLKGNLGAIRSIRFTSDGNFMAMAEPA---DFVHVYDA 392 (448)
Q Consensus 322 ~v~~~~~~p~g~~l~s~~-~d~~i~iwd~~~~~~~~~-----~~~~~~~~v~~l~~sp~g~~l~s~~~d---~~v~vwd~ 392 (448)
+ ..++++|+|..++... .++.|.+.|... ..... ..... .....+.++|+|.++.+.... +.+.+.|.
T Consensus 162 P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~-~~v~~~~~~~~~~~~-~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~ 238 (381)
T COG3391 162 P-TGVAVDPDGNKVYVTNSDDNTVSVIDTSG-NSVVRGSVGSLVGVG-TGPAGIAVDPDGNRVYVANDGSGSNNVLKIDT 238 (381)
T ss_pred c-ceEEECCCCCeEEEEecCCCeEEEEeCCC-cceeccccccccccC-CCCceEEECCCCCEEEEEeccCCCceEEEEeC
Confidence 4 8899999999766665 678899999754 22221 12222 233578999999977776555 48999999
Q ss_pred CCCceeeeeecCcC-ceEEEEEccCCCeEEEEEe
Q 013184 393 KNGFEKEQEIDFFG-EISGMTFSPDTEALFIGVW 425 (448)
Q Consensus 393 ~~~~~~~~~~~~~~-~v~~~~fspdg~~L~~~~~ 425 (448)
.++........-.. ....+.++|+|+++++...
T Consensus 239 ~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~ 272 (381)
T COG3391 239 ATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANS 272 (381)
T ss_pred CCceEEEeccccccCCCCceeECCCCCEEEEEec
Confidence 98876655222222 5678999999999988733
No 318
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.39 E-value=4.7e-06 Score=74.76 Aligned_cols=194 Identities=12% Similarity=0.181 Sum_probs=124.2
Q ss_pred eeEEEEe----cCCEEEEEeCCCeEEEEEcCCCCceeE-------------------------EE---------------
Q 013184 193 QVSTLAV----RDNLLIAGGFQGELICKYLDQPGVSFC-------------------------SR--------------- 228 (448)
Q Consensus 193 ~i~~l~~----~~~~lvsg~~dg~i~vw~~~~~~~~~~-------------------------~~--------------- 228 (448)
.|..+.+ .-+.++..+.|.+|++|.+.....+.. .+
T Consensus 87 Kin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rv 166 (460)
T COG5170 87 KINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRV 166 (460)
T ss_pred HhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEecccee
Confidence 5666666 335677788999999998765421100 00
Q ss_pred eecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCC----ceEEEEeec-----CCCeeEEEECC-CCCEEEEEec
Q 013184 229 TTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMER----FQLSKHFSF-----PWPVNHTSLSP-DGKLLVIVGD 298 (448)
Q Consensus 229 ~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~----~~~~~~~~~-----~~~v~~~~~sp-~~~~l~~~~~ 298 (448)
....|.-+++++.+ ..+.. .++ ++.|-.|.+|+++- ..++-.-+| ..-|++..|+| ....+...+.
T Consensus 167 yaNaH~yhiNSiS~--NsD~e-t~l-SaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsS 242 (460)
T COG5170 167 YANAHPYHINSISF--NSDKE-TLL-SADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSS 242 (460)
T ss_pred ccccceeEeeeeee--cCchh-eee-eccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecC
Confidence 01223334445544 33322 344 44578899998864 223222222 24488999999 4566777788
Q ss_pred CCcEEEEECCCCce------eE--e--------eecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccC
Q 013184 299 NPEGILVDSQTGKA------IM--P--------LCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGN 362 (448)
Q Consensus 299 d~~i~i~d~~~~~~------~~--~--------l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 362 (448)
.|.|++-|++.... +. . +.+-...|..+.|+|+|++|++-..- +|+|||++....++.++.-|
T Consensus 243 kG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl-tvkiwDvnm~k~pikTi~~h 321 (460)
T COG5170 243 KGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL-TVKIWDVNMAKNPIKTIPMH 321 (460)
T ss_pred CCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc-eEEEEecccccCCceeechH
Confidence 99999999984321 11 1 11223457788999999999986554 79999999888898888655
Q ss_pred CC------------Ce---EEEEEcCCCCEEEEEeCCCeEEEEE
Q 013184 363 LG------------AI---RSIRFTSDGNFMAMAEPADFVHVYD 391 (448)
Q Consensus 363 ~~------------~v---~~l~~sp~g~~l~s~~~d~~v~vwd 391 (448)
.. .| ..+.||.+.+.+.+|+..+..-+|-
T Consensus 322 ~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 322 CDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred HHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeec
Confidence 32 22 4578888888888888776666665
No 319
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.36 E-value=4.8e-05 Score=76.31 Aligned_cols=166 Identities=17% Similarity=0.128 Sum_probs=108.3
Q ss_pred eCCCcEEEEecCCceEEEEeecCCCeeEEEECCCCCEEEEEe--------------------------------------
Q 013184 256 NNDCGVRDFDMERFQLSKHFSFPWPVNHTSLSPDGKLLVIVG-------------------------------------- 297 (448)
Q Consensus 256 s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-------------------------------------- 297 (448)
-..+.+.+.|.++.+....+........+.++|+|+++++.+
T Consensus 212 ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~ 291 (635)
T PRK02888 212 KYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFK 291 (635)
T ss_pred ceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEE
Confidence 334566777777777777766555666777777777777664
Q ss_pred --cCCcEEEEECCC-----CceeEeeecCCCcEEEEEEcCCCCEEEEEeC-CCcEEEEEccCCCc-----------ceEE
Q 013184 298 --DNPEGILVDSQT-----GKAIMPLCGHLDFSFASAWHPDGRIFATGNQ-DKTCRVWDVRNLSK-----------SVAV 358 (448)
Q Consensus 298 --~d~~i~i~d~~~-----~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~-d~~i~iwd~~~~~~-----------~~~~ 358 (448)
.++.|.++|.++ .+.+..+. -......+.++|||+++++++. +.+|.|.|+.+... .+..
T Consensus 292 ~V~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvae 370 (635)
T PRK02888 292 TIGGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAE 370 (635)
T ss_pred EECCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEe
Confidence 124577777776 23344443 3345568999999998877765 88999999976332 2334
Q ss_pred EccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC----------ceeeeeecCcCc-----eEEEEEccCCCeEEEE
Q 013184 359 LKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNG----------FEKEQEIDFFGE-----ISGMTFSPDTEALFIG 423 (448)
Q Consensus 359 ~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~----------~~~~~~~~~~~~-----v~~~~fspdg~~L~~~ 423 (448)
..-..+|+ ..+|.++|....+---|..|..||+... ..+..+.-|..+ ..+=.-.|||++|++.
T Consensus 371 vevGlGPL-HTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~ 449 (635)
T PRK02888 371 PELGLGPL-HTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSL 449 (635)
T ss_pred eccCCCcc-eEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEc
Confidence 44344453 5789999988888888999999998761 222222222221 1222247899999887
No 320
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=3.4e-06 Score=79.21 Aligned_cols=186 Identities=17% Similarity=0.106 Sum_probs=132.0
Q ss_pred CCCCeeEEEEeCCCcEEEEecCC---ceEEEEee-cCCCeeEEEECCCCCEEEEEec-CCcEEEEECCCCceeEeeec--
Q 013184 246 PSGGIHFMASNNDCGVRDFDMER---FQLSKHFS-FPWPVNHTSLSPDGKLLVIVGD-NPEGILVDSQTGKAIMPLCG-- 318 (448)
Q Consensus 246 ~~~~~~l~s~s~dg~v~iwd~~~---~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~-d~~i~i~d~~~~~~~~~l~~-- 318 (448)
+.-..++++++.||.++.|--.. -+.+..+. |-+.|.+++.+-++.++.+++. |..++++|+.+-..+.-++.
T Consensus 17 ~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~ 96 (558)
T KOG0882|consen 17 PTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVD 96 (558)
T ss_pred eehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhccccc
Confidence 34455899999999999997644 23444444 7788999999999999999888 99999999887655433321
Q ss_pred CCCcEEEEEEcCCC---CEEEE-EeCCCcEEEEEccCCCcce-EEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 013184 319 HLDFSFASAWHPDG---RIFAT-GNQDKTCRVWDVRNLSKSV-AVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAK 393 (448)
Q Consensus 319 h~~~v~~~~~~p~g---~~l~s-~~~d~~i~iwd~~~~~~~~-~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~ 393 (448)
-.+.+ ..+...| ..|+. ...++.+.++|-+....+. ..-.-|..+|.++.+.|-+..+++....|.|.-|...
T Consensus 97 lPg~a--~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e 174 (558)
T KOG0882|consen 97 LPGFA--EWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAE 174 (558)
T ss_pred CCCce--EEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCC
Confidence 22222 1122223 13443 3467899999987644343 4445689999999999999999999999999999976
Q ss_pred CC-c-----e---------eeeeecCcCceEEEEEccCCCeEEEEEecCCcceEE
Q 013184 394 NG-F-----E---------KEQEIDFFGEISGMTFSPDTEALFIGVWDRTYGSLL 433 (448)
Q Consensus 394 ~~-~-----~---------~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~~~~ll 433 (448)
.. + . +..+....+...++.|+|+|..+.+-+.|++++...
T Consensus 175 ~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~ 229 (558)
T KOG0882|consen 175 GPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFV 229 (558)
T ss_pred CcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEE
Confidence 31 1 0 111223446789999999999999988888766543
No 321
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.33 E-value=0.00015 Score=69.36 Aligned_cols=220 Identities=10% Similarity=0.077 Sum_probs=129.8
Q ss_pred eEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCC----CeeEEEEeC----------CCcEEEEecCCc-----eE-
Q 013184 212 ELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSG----GIHFMASNN----------DCGVRDFDMERF-----QL- 271 (448)
Q Consensus 212 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~s~s~----------dg~v~iwd~~~~-----~~- 271 (448)
.|++.|..+.... .......+..+.+++....+.+ ..++++|.. .|.|.++++... ++
T Consensus 3 ~i~l~d~~~~~~~--~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~ 80 (321)
T PF03178_consen 3 SIRLVDPTTFEVL--DSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLK 80 (321)
T ss_dssp EEEEEETTTSSEE--EEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEE
T ss_pred EEEEEeCCCCeEE--EEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEE
Confidence 4666666555433 2223334455556655554442 456776643 288999999873 33
Q ss_pred -EEEeecCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCc-eeEeeec-CCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 013184 272 -SKHFSFPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGK-AIMPLCG-HLDFSFASAWHPDGRIFATGNQDKTCRVWD 348 (448)
Q Consensus 272 -~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~-~~~~l~~-h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd 348 (448)
+.....+++|.+++-- .+ .|+++. .+.|.+|++...+ ....-.. ....+.++... +++|+.|..-..+.++.
T Consensus 81 ~i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~ 155 (321)
T PF03178_consen 81 LIHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLR 155 (321)
T ss_dssp EEEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEE
T ss_pred EEEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEE
Confidence 3334478999998876 34 444443 4689999988777 4332221 23356666654 66999999888899886
Q ss_pred ccCCCcceEEEcc--CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC-------Cc-eeeee-ec-CcCceEEE---EE
Q 013184 349 VRNLSKSVAVLKG--NLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKN-------GF-EKEQE-ID-FFGEISGM---TF 413 (448)
Q Consensus 349 ~~~~~~~~~~~~~--~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~-------~~-~~~~~-~~-~~~~v~~~---~f 413 (448)
.+.....+..+.. ....+.++.|-++++.++++..+|.|.++.... +. .+... .- ....|+++ ++
T Consensus 156 ~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l 235 (321)
T PF03178_consen 156 YDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSL 235 (321)
T ss_dssp EETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--S
T ss_pred EEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEe
Confidence 6542333433332 334588888887778999999999999998753 11 22211 11 23457777 55
Q ss_pred ccC--CC------eEEEEEecCCcceEEEEecc
Q 013184 414 SPD--TE------ALFIGVWDRTYGSLLQYNRC 438 (448)
Q Consensus 414 spd--g~------~L~~~~~D~~~~~ll~~~~~ 438 (448)
.|. +. .++.++.+|.++.++.+...
T Consensus 236 ~~~~~~~~~~~~~~i~~~T~~G~Ig~l~p~l~~ 268 (321)
T PF03178_consen 236 IPRSGSSESPNRPQILYGTVDGSIGVLIPFLSE 268 (321)
T ss_dssp S--SSSS-TTEEEEEEEEETTS-EEEEEE-E-H
T ss_pred eecCCCCcccccceEEEEecCCEEEEEEecCCH
Confidence 562 22 48888999999988884333
No 322
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.32 E-value=0.00043 Score=62.03 Aligned_cols=206 Identities=15% Similarity=0.132 Sum_probs=111.4
Q ss_pred CcccccccceeeeCCCCeEEEe-cCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe-c------
Q 013184 129 TILHFQLRNLVWSTSKHDVYLM-SHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV-R------ 200 (448)
Q Consensus 129 ~~~hfq~r~l~~~~~~~~v~~~-~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~-~------ 200 (448)
+=.++|.|.+.|+++..-+.++ +.++|.++|+.. .++..+.... ..++. ....|..|.| .
T Consensus 40 kD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g---~~lf~I~p~~----~~~~d-----~~~Aiagl~Fl~~~~s~~ 107 (282)
T PF15492_consen 40 KDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG---SELFVIPPAM----SFPGD-----LSDAIAGLIFLEYKKSAQ 107 (282)
T ss_pred CCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc---ceeEEcCccc----ccCCc-----cccceeeeEeeccccccc
Confidence 3467899999999999888887 677899999765 2333333211 11221 2345677766 1
Q ss_pred -CCEEEEEeCCCeEEEEEcCC---CCceeE--EEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEE
Q 013184 201 -DNLLIAGGFQGELICKYLDQ---PGVSFC--SRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKH 274 (448)
Q Consensus 201 -~~~lvsg~~dg~i~vw~~~~---~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~ 274 (448)
...|++-...|.++-+-+.. .+.... ..+..+...-++++.+ +|....+++.|.....-..+..
T Consensus 108 ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy--~p~h~LLlVgG~~~~~~~~s~a-------- 177 (282)
T PF15492_consen 108 WSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVY--HPKHRLLLVGGCEQNQDGMSKA-------- 177 (282)
T ss_pred cceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEE--cCCCCEEEEeccCCCCCccccc--------
Confidence 23577788899988888643 222222 2232333333445544 7776655555544332111100
Q ss_pred eecCCCeeEEEE---CCCCCEEEEEecCC------cEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEE
Q 013184 275 FSFPWPVNHTSL---SPDGKLLVIVGDNP------EGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCR 345 (448)
Q Consensus 275 ~~~~~~v~~~~~---sp~~~~l~~~~~d~------~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~ 345 (448)
....+++-.. +|..+.+ +...++ .-.+|.+-+.+.........+.|+.+..+|||..||+...+|.|.
T Consensus 178 --~~~GLtaWRiL~~~Pyyk~v-~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~ls 254 (282)
T PF15492_consen 178 --SSCGLTAWRILSDSPYYKQV-TSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLS 254 (282)
T ss_pred --cccCceEEEEcCCCCcEEEc-cccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEE
Confidence 0111111111 1111111 111111 112233222222222223568899999999999999999999999
Q ss_pred EEEccCCCcceEEEc
Q 013184 346 VWDVRNLSKSVAVLK 360 (448)
Q Consensus 346 iwd~~~~~~~~~~~~ 360 (448)
+|++.+ -.+.....
T Consensus 255 LW~iPs-L~~~~~W~ 268 (282)
T PF15492_consen 255 LWEIPS-LRLQRSWK 268 (282)
T ss_pred EEecCc-chhhcccc
Confidence 999976 34444443
No 323
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.26 E-value=2.7e-07 Score=90.04 Aligned_cols=195 Identities=15% Similarity=0.203 Sum_probs=130.6
Q ss_pred eEEEEe----cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEe----CCCcEEEEe
Q 013184 194 VSTLAV----RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASN----NDCGVRDFD 265 (448)
Q Consensus 194 i~~l~~----~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s----~dg~v~iwd 265 (448)
+.|++. +.-++++|..+|.|.+-.+..+.-. .......+...+++++| ++-+..+|++|- +|..+.|||
T Consensus 59 ~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-s~E~tp~~ar~Ct~lAw--neLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 59 VKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-SAEVTPGYARPCTSLAW--NELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred ceeehhhcCCchhhhhhccccCceEEeecCCcccc-cceeccccccccccccc--ccccHHHHHhhhhhhcccCCcccee
Confidence 445544 3357899999999999888765532 23344455566666666 665555777763 467899999
Q ss_pred cCCc--eEEEEee----cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCC-ceeEeeecCCCcEEEEEEcC-CCCEEEE
Q 013184 266 MERF--QLSKHFS----FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTG-KAIMPLCGHLDFSFASAWHP-DGRIFAT 337 (448)
Q Consensus 266 ~~~~--~~~~~~~----~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~-~~~~~l~~h~~~v~~~~~~p-~g~~l~s 337 (448)
+.++ -+..... .....++++|-.+.+++++|.....+.++|++.. .....+ .+..+..+...| .+.|+++
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs 213 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCS 213 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceec
Confidence 9876 2221111 2345668888888899999999999999998732 222222 344566778888 7888887
Q ss_pred EeCCCcEEEEE-ccCCCcceEEEccCCC----CeEEEEEcCCCC-EEEEEe-CCCeEEEEECCC
Q 013184 338 GNQDKTCRVWD-VRNLSKSVAVLKGNLG----AIRSIRFTSDGN-FMAMAE-PADFVHVYDAKN 394 (448)
Q Consensus 338 ~~~d~~i~iwd-~~~~~~~~~~~~~~~~----~v~~l~~sp~g~-~l~s~~-~d~~v~vwd~~~ 394 (448)
-+ ||.|-+|| .++...++..+..... .+..++|+|... .|++.. ..++|+++|+..
T Consensus 214 ~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 214 NS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred cc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 66 89999999 6665555555543333 388999999542 344444 446899999853
No 324
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.23 E-value=5.1e-05 Score=74.52 Aligned_cols=146 Identities=23% Similarity=0.264 Sum_probs=98.5
Q ss_pred cCCCeeEEEECCCCCEEEEEe---cC-CcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEE-eCCCcEE--EEEc
Q 013184 277 FPWPVNHTSLSPDGKLLVIVG---DN-PEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATG-NQDKTCR--VWDV 349 (448)
Q Consensus 277 ~~~~v~~~~~sp~~~~l~~~~---~d-~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~-~~d~~i~--iwd~ 349 (448)
....+..-+|+|+++.++... .. ..+.++++.+++....+. ....-...+|+|||+.|+.+ ..|+... +.|+
T Consensus 191 ~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl 269 (425)
T COG0823 191 SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDL 269 (425)
T ss_pred cCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcC
Confidence 455677889999998876653 23 468999999887655443 22333457899999876654 5566654 5555
Q ss_pred cCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCC---eEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEec
Q 013184 350 RNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPAD---FVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWD 426 (448)
Q Consensus 350 ~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~---~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D 426 (448)
. ++.+..+....+.-..-.|+|||++|+..+..+ .|.++++..+.. .++....+.-....|+|||++|+..+..
T Consensus 270 ~--~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~~~~ 346 (425)
T COG0823 270 D--GKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFESSS 346 (425)
T ss_pred C--CCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEEEecc
Confidence 4 344545655555455778999999998876543 688888776554 3333333333378899999999988754
No 325
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.20 E-value=0.00064 Score=71.86 Aligned_cols=196 Identities=12% Similarity=0.110 Sum_probs=123.6
Q ss_pred eeeEEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEec---
Q 013184 192 TQVSTLAV--RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDM--- 266 (448)
Q Consensus 192 ~~i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~--- 266 (448)
..|.++.+ +.+-++.+...|.|.+-+..+...... +.-...+.+.+| +|++. .++..+..+++.+.+-
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eiv----g~vd~GI~aasw--S~Dee-~l~liT~~~tll~mT~~f~ 141 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIV----GNVDNGISAASW--SPDEE-LLALITGRQTLLFMTKDFE 141 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeee----eeccCceEEEee--cCCCc-EEEEEeCCcEEEEEecccc
Confidence 36888888 888999999999999987766553322 222222345555 89987 6666666667665432
Q ss_pred -CCceEE-------------------EEee----------------------cCCCeeEEEECCCCCEEEEEe-----cC
Q 013184 267 -ERFQLS-------------------KHFS----------------------FPWPVNHTSLSPDGKLLVIVG-----DN 299 (448)
Q Consensus 267 -~~~~~~-------------------~~~~----------------------~~~~v~~~~~sp~~~~l~~~~-----~d 299 (448)
-..+.+ ..|. ....=..++|.-||+++|+.. .-
T Consensus 142 ~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~ 221 (1265)
T KOG1920|consen 142 PIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGT 221 (1265)
T ss_pred chhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCc
Confidence 000000 0111 011123589999999999843 33
Q ss_pred CcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEe---CCCcEEEEEccCCCc--ceEEEccCCCCeEEEEEcCC
Q 013184 300 PEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGN---QDKTCRVWDVRNLSK--SVAVLKGNLGAIRSIRFTSD 374 (448)
Q Consensus 300 ~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~---~d~~i~iwd~~~~~~--~~~~~~~~~~~v~~l~~sp~ 374 (448)
..|++||.. |..-..-......-.+++|-|.|..+++-- .|+.|.++.-+.... -...+.....++..++|+.+
T Consensus 222 RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~ 300 (1265)
T KOG1920|consen 222 RKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSN 300 (1265)
T ss_pred eeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCC
Confidence 789999976 543322222233345799999999998864 355688887642111 11223334445899999999
Q ss_pred CCEEEE---EeCCCeEEEEECCCC
Q 013184 375 GNFMAM---AEPADFVHVYDAKNG 395 (448)
Q Consensus 375 g~~l~s---~~~d~~v~vwd~~~~ 395 (448)
+..||+ ......|++|-+.+.
T Consensus 301 sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 301 SDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred CCceeeeecccccceEEEEEecCe
Confidence 999998 455556999998764
No 326
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.20 E-value=0.00042 Score=69.79 Aligned_cols=232 Identities=13% Similarity=0.053 Sum_probs=155.3
Q ss_pred eEEEEe-cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCC--------C-CCeeEEEEeCCCcEEE
Q 013184 194 VSTLAV-RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSP--------S-GGIHFMASNNDCGVRD 263 (448)
Q Consensus 194 i~~l~~-~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--------~-~~~~l~s~s~dg~v~i 263 (448)
-.++.+ .+.+++-|+. ..|.+-|..+-+. ......|...++.+.|..-| . ...+|+++...|.|.+
T Consensus 18 ~~A~Dw~~~GLiAygsh-slV~VVDs~s~q~---iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil 93 (1062)
T KOG1912|consen 18 RNAADWSPSGLIAYGSH-SLVSVVDSRSLQL---IQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIIL 93 (1062)
T ss_pred ccccccCccceEEEecC-ceEEEEehhhhhh---hhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEE
Confidence 455666 4556666654 4455656544332 22233455666677774322 1 2346788888999999
Q ss_pred EecCCceEEEEee-cCCCeeEEEECC---CC-CEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcC-CCCEEEE
Q 013184 264 FDMERFQLSKHFS-FPWPVNHTSLSP---DG-KLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHP-DGRIFAT 337 (448)
Q Consensus 264 wd~~~~~~~~~~~-~~~~v~~~~~sp---~~-~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p-~g~~l~s 337 (448)
||...+..+..+. +..++..++|-| +. ..|++.+....+.+|+..+|+.............|+.+.| |.+.+..
T Consensus 94 ~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~ 173 (1062)
T KOG1912|consen 94 VDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCV 173 (1062)
T ss_pred EEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEE
Confidence 9999888877777 678899999976 34 5677778888999999999998887766666778899999 7777777
Q ss_pred EeCCCcEEEEEccCC------CcceEEEccCCC-----------------------C--eEEEEEcCCCCEEEEEeCCCe
Q 013184 338 GNQDKTCRVWDVRNL------SKSVAVLKGNLG-----------------------A--IRSIRFTSDGNFMAMAEPADF 386 (448)
Q Consensus 338 ~~~d~~i~iwd~~~~------~~~~~~~~~~~~-----------------------~--v~~l~~sp~g~~l~s~~~d~~ 386 (448)
-+..|.+-+-+.-.. ++.++.-..|.. . .-.++|+|.-+-++.......
T Consensus 174 l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~pre 253 (1062)
T KOG1912|consen 174 LGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRE 253 (1062)
T ss_pred EccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccc
Confidence 777777766654321 122222222221 0 113567887665555556667
Q ss_pred EEEEECCCCceeeeeecCcCceEEEEEccCC--CeEEEEEecCCc
Q 013184 387 VHVYDAKNGFEKEQEIDFFGEISGMTFSPDT--EALFIGVWDRTY 429 (448)
Q Consensus 387 v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg--~~L~~~~~D~~~ 429 (448)
+.|+|++-..++....-..+.+.=+.|-|++ ..|++.-.||.+
T Consensus 254 llv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~l 298 (1062)
T KOG1912|consen 254 LLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRL 298 (1062)
T ss_pred eEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeE
Confidence 9999998877777766666666667777765 578888888654
No 327
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.17 E-value=0.0018 Score=60.84 Aligned_cols=213 Identities=17% Similarity=0.159 Sum_probs=131.4
Q ss_pred EEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee------
Q 013184 203 LLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS------ 276 (448)
Q Consensus 203 ~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~------ 276 (448)
++.+--..+.|.-|+..+.... .........+...+ ...+ .|+++. ..+.+++.+++..+..+.
T Consensus 39 L~w~DI~~~~i~r~~~~~g~~~----~~~~p~~~~~~~~~--d~~g--~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~~~ 108 (307)
T COG3386 39 LLWVDILGGRIHRLDPETGKKR----VFPSPGGFSSGALI--DAGG--RLIACE--HGVRLLDPDTGGKITLLAEPEDGL 108 (307)
T ss_pred EEEEeCCCCeEEEecCCcCceE----EEECCCCcccceee--cCCC--eEEEEc--cccEEEeccCCceeEEeccccCCC
Confidence 5666667778888877654422 11222223333322 3333 455553 346667766555522222
Q ss_pred cCCCeeEEEECCCCCEEEEEec-----------CCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeC-CCcE
Q 013184 277 FPWPVNHTSLSPDGKLLVIVGD-----------NPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQ-DKTC 344 (448)
Q Consensus 277 ~~~~v~~~~~sp~~~~l~~~~~-----------d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~-d~~i 344 (448)
.....|.+...|+|.+.+.... -|.++.++. .+..+..+..+-...+.++||||++.++.+.. .+.|
T Consensus 109 ~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i 187 (307)
T COG3386 109 PLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRI 187 (307)
T ss_pred CcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeE
Confidence 2245678889999987765444 123444443 56666666666667788999999987777755 4667
Q ss_pred EEEEccC-----CCcc-eEEEccCCCCeEEEEEcCCCCEEEEEeCCC-eEEEEECCCCceeeeeecCcCceEEEEEc-cC
Q 013184 345 RVWDVRN-----LSKS-VAVLKGNLGAIRSIRFTSDGNFMAMAEPAD-FVHVYDAKNGFEKEQEIDFFGEISGMTFS-PD 416 (448)
Q Consensus 345 ~iwd~~~-----~~~~-~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~-~v~vwd~~~~~~~~~~~~~~~~v~~~~fs-pd 416 (448)
.-|++.. .++. ...+....+..-.++...+|.+-+++..+| .|.+|+.. |+.+..+.-....+++++|- |+
T Consensus 188 ~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~ 266 (307)
T COG3386 188 HRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPD 266 (307)
T ss_pred EEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCC
Confidence 7776641 0111 222223345566778888888776665554 89999977 88887777665788999995 56
Q ss_pred CCeEEEEEecC
Q 013184 417 TEALFIGVWDR 427 (448)
Q Consensus 417 g~~L~~~~~D~ 427 (448)
.+.|++.+...
T Consensus 267 ~~~L~iTs~~~ 277 (307)
T COG3386 267 LNTLYITSARS 277 (307)
T ss_pred cCEEEEEecCC
Confidence 67887776543
No 328
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.13 E-value=0.00034 Score=72.86 Aligned_cols=139 Identities=17% Similarity=0.213 Sum_probs=97.5
Q ss_pred eEEEEeCCCcEEEEecCCceEEEEeecCCCeeEEEECCC-------CCEEEEEecCCcEEEEECCCCc-eeEeeec----
Q 013184 251 HFMASNNDCGVRDFDMERFQLSKHFSFPWPVNHTSLSPD-------GKLLVIVGDNPEGILVDSQTGK-AIMPLCG---- 318 (448)
Q Consensus 251 ~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~-------~~~l~~~~~d~~i~i~d~~~~~-~~~~l~~---- 318 (448)
+|....+...|+-.|+++|+++........+.-..+.|+ ....++|-.+..+..||++-.. .+..-..
T Consensus 496 il~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~ 575 (794)
T PF08553_consen 496 ILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYS 575 (794)
T ss_pred EeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccc
Confidence 344445678899999999999999884433333344443 3455677788899999998642 2211111
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 013184 319 HLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDA 392 (448)
Q Consensus 319 h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~ 392 (448)
......|++-+.+| +||+|+.+|.||+||- .+.+....+.+-..+|..|..+.||++|++.+.. .|.++++
T Consensus 576 ~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t-yLlLi~t 646 (794)
T PF08553_consen 576 SKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATCKT-YLLLIDT 646 (794)
T ss_pred cCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEeecc-eEEEEEE
Confidence 23345566666665 7999999999999995 3344555667778899999999999999887654 5777775
No 329
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=2.1e-05 Score=73.10 Aligned_cols=158 Identities=16% Similarity=0.246 Sum_probs=107.1
Q ss_pred EEEEecCCceEEEEee-cCCCeeEEEECCCCC-EEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCC-CEEEE
Q 013184 261 VRDFDMERFQLSKHFS-FPWPVNHTSLSPDGK-LLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDG-RIFAT 337 (448)
Q Consensus 261 v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~-~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g-~~l~s 337 (448)
|++.+..+.+....+. +...|..++|||... ++..++.+..|+|.|+++...+.....+ ..+++++|.-+. ++|..
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence 6666666655555444 677899999999655 7888999999999999999888888877 789999999865 57888
Q ss_pred EeCCCcEEEEEccCCCcceEEEccC--CCCeEEE------EEcCCCCEEEEEeCCCeEEEEECCCCc--eee-eeecCcC
Q 013184 338 GNQDKTCRVWDVRNLSKSVAVLKGN--LGAIRSI------RFTSDGNFMAMAEPADFVHVYDAKNGF--EKE-QEIDFFG 406 (448)
Q Consensus 338 ~~~d~~i~iwd~~~~~~~~~~~~~~--~~~v~~l------~~sp~g~~l~s~~~d~~v~vwd~~~~~--~~~-~~~~~~~ 406 (448)
|-+.|.|.|||+|.+..++..+.+. ..+|..+ +..+.|.+|+.+..+ +..|.+.-.. ... ......|
T Consensus 254 Gl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG 331 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPG 331 (463)
T ss_pred eccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCc
Confidence 8899999999999876666555442 2344333 333456666666554 4566654321 111 1112345
Q ss_pred ceEEEEEccCCCeEE
Q 013184 407 EISGMTFSPDTEALF 421 (448)
Q Consensus 407 ~v~~~~fspdg~~L~ 421 (448)
...+++..+-.+.++
T Consensus 332 ~cismqy~~~snh~l 346 (463)
T KOG1645|consen 332 ICISMQYHGVSNHLL 346 (463)
T ss_pred ceeeeeecCccceEE
Confidence 566666666444443
No 330
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=0.00026 Score=72.11 Aligned_cols=178 Identities=15% Similarity=0.131 Sum_probs=116.8
Q ss_pred CCCCCeeEEEEeCCCcEEEEecCCceEEEEee-cCCC-eeEEEECCCCCEEEEEecCC-----cEEEEECCC------Cc
Q 013184 245 SPSGGIHFMASNNDCGVRDFDMERFQLSKHFS-FPWP-VNHTSLSPDGKLLVIVGDNP-----EGILVDSQT------GK 311 (448)
Q Consensus 245 ~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~-v~~~~~sp~~~~l~~~~~d~-----~i~i~d~~~------~~ 311 (448)
+++++ .++.|+++|.|.+.+- ..+..+.+. ++.. |..+..-.+..+|++.+.|. .++||++.. .+
T Consensus 32 ~s~~~-~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~ 109 (933)
T KOG2114|consen 32 SSSTG-SVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQ 109 (933)
T ss_pred cCCCc-eEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcc
Confidence 45554 7999999999988874 345545555 4444 55554444446777766554 589999853 23
Q ss_pred ee--Eeeec-----CCCcEEEEEEcCCCCEEEEEeCCCcEEEEEc---cCCCcceEEEccCCCCeEEEEEcCCCCEEEEE
Q 013184 312 AI--MPLCG-----HLDFSFASAWHPDGRIFATGNQDKTCRVWDV---RNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMA 381 (448)
Q Consensus 312 ~~--~~l~~-----h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~---~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~ 381 (448)
++ +.+.+ ...++.+++.+.+-+.+|+|-.+|.|..+.- |..+....-......+|+.+.+..+|+.++.+
T Consensus 110 c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv 189 (933)
T KOG2114|consen 110 CLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFV 189 (933)
T ss_pred eeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEE
Confidence 33 22222 2466888999999999999999999998853 22222233333455799999999999873333
Q ss_pred eCCCeEEEEECCCCceeee-eecCcCceEEEEEccCCCeEEEEE
Q 013184 382 EPADFVHVYDAKNGFEKEQ-EIDFFGEISGMTFSPDTEALFIGV 424 (448)
Q Consensus 382 ~~d~~v~vwd~~~~~~~~~-~~~~~~~v~~~~fspdg~~L~~~~ 424 (448)
..-..|.+|.+........ +..|...+.+.+|++....+++++
T Consensus 190 ~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~ 233 (933)
T KOG2114|consen 190 ATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG 233 (933)
T ss_pred EecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec
Confidence 3445799999884332333 455667888999988666455553
No 331
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.06 E-value=0.0078 Score=60.97 Aligned_cols=258 Identities=18% Similarity=0.210 Sum_probs=139.9
Q ss_pred CeEEEe-cCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceee-EEEEecCCEEEEEe---------CCCeE
Q 013184 145 HDVYLM-SHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQV-STLAVRDNLLIAGG---------FQGEL 213 (448)
Q Consensus 145 ~~v~~~-~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i-~~l~~~~~~lvsg~---------~dg~i 213 (448)
..||+. .++.|.-+|..+++..-.....++..+ + ..+ .+..+.+.+++.|+ .+|.|
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~-----~--------~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v 177 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPP-----G--------YTMTGAPTIVKKLVIIGSSGAEFFACGVRGAL 177 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCc-----c--------eEecCCCEEECCEEEEeccccccccCCCCcEE
Confidence 567775 466788999887766554444432100 0 001 11122335555553 46888
Q ss_pred EEEEcCCCCceeEEEeecCCC-----------------Cce-eeEEEEeCCCCCeeEEEEeCCC----------------
Q 013184 214 ICKYLDQPGVSFCSRTTYDEN-----------------AIT-NAVEIYNSPSGGIHFMASNNDC---------------- 259 (448)
Q Consensus 214 ~vw~~~~~~~~~~~~~~~~~~-----------------~~~-~~v~~~~~~~~~~~l~s~s~dg---------------- 259 (448)
...|..+.+............ ..+ ....+ .+.+. +++.++.++
T Consensus 178 ~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~--d~~~g-~V~vg~~~g~~~~~~~~~~~~~~~~ 254 (488)
T cd00216 178 RAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTY--DPKTN-LVYVGTGNGSPWNWGGRRTPGDNLY 254 (488)
T ss_pred EEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeE--eCCCC-EEEEECCCCCCCccCCccCCCCCCc
Confidence 888888777554433321100 000 01111 22333 566665444
Q ss_pred --cEEEEecCCceEEEEeecCC-Ce------eEEEEC----CCCC---EEEEEecCCcEEEEECCCCceeEeeecCCCcE
Q 013184 260 --GVRDFDMERFQLSKHFSFPW-PV------NHTSLS----PDGK---LLVIVGDNPEGILVDSQTGKAIMPLCGHLDFS 323 (448)
Q Consensus 260 --~v~iwd~~~~~~~~~~~~~~-~v------~~~~~s----p~~~---~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v 323 (448)
.|.-+|+.+++.+..++... .. ....+. -++. .+++++.+|.+..+|.++|+.+...... .
T Consensus 255 ~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~ 331 (488)
T cd00216 255 TDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---E 331 (488)
T ss_pred eeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---c
Confidence 79999999999998876221 11 011111 1233 5777888999999999999988765421 0
Q ss_pred EEEEEcCCCCEEEEE------------------eCCCcEEEEEccCCCcceEEEccCC--------CCe--EEEEEcCCC
Q 013184 324 FASAWHPDGRIFATG------------------NQDKTCRVWDVRNLSKSVAVLKGNL--------GAI--RSIRFTSDG 375 (448)
Q Consensus 324 ~~~~~~p~g~~l~s~------------------~~d~~i~iwd~~~~~~~~~~~~~~~--------~~v--~~l~~sp~g 375 (448)
..++.+| + .+..+ ..+|.+.-.|+.+ ++.+-...... .+. ..+. -.+
T Consensus 332 ~~~~~~~-~-~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~t-G~~~W~~~~~~~~~~~~~g~~~~~~~~~--~~g 406 (488)
T cd00216 332 QPMAYDP-G-LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKT-GKVVWEKREGTIRDSWNIGFPHWGGSLA--TAG 406 (488)
T ss_pred cccccCC-c-eEEEccccccccCcccccCCCCCCCceEEEEEeCCC-CcEeeEeeCCccccccccCCcccCcceE--ecC
Confidence 1123333 2 22221 1345666666655 44332222110 111 1122 246
Q ss_pred CEEEEEeCCCeEEEEECCCCceeeeeecCcCce-EE-EEEccCCCeEEEEEecCC
Q 013184 376 NFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEI-SG-MTFSPDTEALFIGVWDRT 428 (448)
Q Consensus 376 ~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v-~~-~~fspdg~~L~~~~~D~~ 428 (448)
..|++++.+|.|+.+|..+|+.+....- .+.+ .. +.|..+| .++++..++.
T Consensus 407 ~~v~~g~~dG~l~ald~~tG~~lW~~~~-~~~~~a~P~~~~~~g-~~yv~~~~g~ 459 (488)
T cd00216 407 NLVFAGAADGYFRAFDATTGKELWKFRT-PSGIQATPMTYEVNG-KQYVGVMVGG 459 (488)
T ss_pred CeEEEECCCCeEEEEECCCCceeeEEEC-CCCceEcCEEEEeCC-EEEEEEEecC
Confidence 7888889999999999999998876553 2322 22 2234454 6777777764
No 332
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.02 E-value=4.7e-06 Score=84.36 Aligned_cols=147 Identities=15% Similarity=0.144 Sum_probs=114.2
Q ss_pred EEEEee-cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCC--cEEEE
Q 013184 271 LSKHFS-FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDK--TCRVW 347 (448)
Q Consensus 271 ~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~--~i~iw 347 (448)
..+.|. +....+|++|+-..+.|++|+..|.|+++++.+|.......+|..+|+-+.-+.+|..+++.+.-. -..+|
T Consensus 1093 ~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALW 1172 (1516)
T ss_pred cchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHh
Confidence 334444 677889999999999999999999999999999999999999999999999999999877765543 46799
Q ss_pred EccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeee-c---CcCceEEEEEccCCCeEE
Q 013184 348 DVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEI-D---FFGEISGMTFSPDTEALF 421 (448)
Q Consensus 348 d~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~-~---~~~~v~~~~fspdg~~L~ 421 (448)
++.....+.+.+... .++.|+..-++-+.|+....+.|||++++..+.++. + ....-+...|+|+.+.++
T Consensus 1173 ~~~s~~~~~Hsf~ed----~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1173 DASSTGGPRHSFDED----KAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred ccccccCcccccccc----ceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence 997766677766643 568898776666677777789999999987665422 1 122335677888877665
No 333
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.99 E-value=0.0067 Score=55.02 Aligned_cols=183 Identities=11% Similarity=0.174 Sum_probs=108.3
Q ss_pred eeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEeec--CCCeeEEEECCCCCEEEEEecCCcEEEEECCCCc---
Q 013184 237 TNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFSF--PWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGK--- 311 (448)
Q Consensus 237 ~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~--~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~--- 311 (448)
+..+.+ .|+.+.++++....+.|..++++ |++++.+.. .+-.-.+++..++.++++--.++.+.++++....
T Consensus 24 ~SGLTy--~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~ 100 (248)
T PF06977_consen 24 LSGLTY--NPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSL 100 (248)
T ss_dssp EEEEEE--ETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT-
T ss_pred ccccEE--cCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEecccccc
Confidence 456655 78877788888899999999974 788888873 3567889998777666655568888888773211
Q ss_pred ---eeEeee-----cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccC--CCcceEE--E------ccCCCCeEEEEEcC
Q 013184 312 ---AIMPLC-----GHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRN--LSKSVAV--L------KGNLGAIRSIRFTS 373 (448)
Q Consensus 312 ---~~~~l~-----~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~--~~~~~~~--~------~~~~~~v~~l~~sp 373 (448)
....+. .+...+-.++|+|.++.|+.+-.....+||.++. ....+.. . ......+..+.++|
T Consensus 101 ~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p 180 (248)
T PF06977_consen 101 DRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDP 180 (248)
T ss_dssp -EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEET
T ss_pred chhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcC
Confidence 112222 2445688999999888777777777778887753 1212111 1 12334578899998
Q ss_pred C-CCEEEEEeCCCeEEEEECCCCceeeeeecCc---------CceEEEEEccCCCeEEEEE
Q 013184 374 D-GNFMAMAEPADFVHVYDAKNGFEKEQEIDFF---------GEISGMTFSPDTEALFIGV 424 (448)
Q Consensus 374 ~-g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~---------~~v~~~~fspdg~~L~~~~ 424 (448)
. |.+++.+.....|.++| .+|+.+..+.-.. ...-+|+|.++|+ |++.+
T Consensus 181 ~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~-LYIvs 239 (248)
T PF06977_consen 181 RTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN-LYIVS 239 (248)
T ss_dssp TTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT---EEEEE
T ss_pred CCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCC-EEEEc
Confidence 5 46667777778899999 6676554433211 3578999999996 44444
No 334
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.95 E-value=0.0058 Score=57.17 Aligned_cols=268 Identities=19% Similarity=0.164 Sum_probs=153.5
Q ss_pred CcceeeecccCCCCCcccccccceeeeCCCCeEEEec---------C--CeEEEEecCCCceeEEEecCCC-CCCCCCCC
Q 013184 115 KYYEFWRNTRSVKSTILHFQLRNLVWSTSKHDVYLMS---------H--FSIVHWSSLSSKRTEVLDVSGH-VAPCEKHP 182 (448)
Q Consensus 115 ~~~~f~~~~~~~~~~~~hfq~r~l~~~~~~~~v~~~~---------~--~~v~~w~~~~~~~~~~~~~~gh-~~p~~~~~ 182 (448)
..|-+.....+++-.+..-.+-+++.++++..+|.+. . .-|.+||..+-....-+.+.+. ..
T Consensus 18 rv~viD~d~~k~lGmi~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~------ 91 (342)
T PF06433_consen 18 RVYVIDADSGKLLGMIDTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRA------ 91 (342)
T ss_dssp EEEEEETTTTEEEEEEEEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B-------
T ss_pred eEEEEECCCCcEEEEeecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchh------
Confidence 3455555555555555555566777888888888752 1 1488999987655544444321 11
Q ss_pred CCcccCCcceeeEEEEecCCEEEEEeC--CCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCc
Q 013184 183 GNLLEGFTQTQVSTLAVRDNLLIAGGF--QGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCG 260 (448)
Q Consensus 183 ~~~~~~~~~~~i~~l~~~~~~lvsg~~--dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~ 260 (448)
..........++.++++++.... .-.|.|-|+...+......+ ..|..++ |.++..|.+-+.||+
T Consensus 92 ----~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~-------PGC~~iy--P~~~~~F~~lC~DGs 158 (342)
T PF06433_consen 92 ----QVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT-------PGCWLIY--PSGNRGFSMLCGDGS 158 (342)
T ss_dssp -----BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG-------TSEEEEE--EEETTEEEEEETTSC
T ss_pred ----eecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecC-------CCEEEEE--ecCCCceEEEecCCc
Confidence 11122345677778888877654 45777778776654322222 3455554 444446888889999
Q ss_pred EEEEecC-CceEEEEee--c---CCC-eeEEEECCCCCEEEEEecCCcEEEEECCCCcee--EeeecC----------CC
Q 013184 261 VRDFDME-RFQLSKHFS--F---PWP-VNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAI--MPLCGH----------LD 321 (448)
Q Consensus 261 v~iwd~~-~~~~~~~~~--~---~~~-v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~--~~l~~h----------~~ 321 (448)
+.-..+. .|+...... + ..+ +..-++...+..++..+..|.|+-.|+...... ..+..- .+
T Consensus 159 l~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPG 238 (342)
T PF06433_consen 159 LLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPG 238 (342)
T ss_dssp EEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-
T ss_pred eEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCc
Confidence 9999886 455543322 1 122 234444555667777889999998887665432 122110 11
Q ss_pred cEEEEEEcCCCCEEEEEeC--------CC--cEEEEEccCCCcceEEEccCCCCeEEEEEcCCCC-EEEEEe-CCCeEEE
Q 013184 322 FSFASAWHPDGRIFATGNQ--------DK--TCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGN-FMAMAE-PADFVHV 389 (448)
Q Consensus 322 ~v~~~~~~p~g~~l~s~~~--------d~--~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~-~l~s~~-~d~~v~v 389 (448)
.-.-+++++..+.|.+.-. ++ .|-++|+.+ .+.+..+.. ..++.+|..+.+.+ +|++.+ .++.|.|
T Consensus 239 G~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t-~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v 316 (342)
T PF06433_consen 239 GWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKT-HKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDV 316 (342)
T ss_dssp SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTT-TEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEE
T ss_pred ceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCC-CeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEE
Confidence 2234677765444443321 22 366667765 677777764 24678999998876 554444 5789999
Q ss_pred EECCCCceeeeeec
Q 013184 390 YDAKNGFEKEQEID 403 (448)
Q Consensus 390 wd~~~~~~~~~~~~ 403 (448)
||..+|+.+..+..
T Consensus 317 ~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 317 YDAATGKLVRSIEQ 330 (342)
T ss_dssp EETTT--EEEEE--
T ss_pred EeCcCCcEEeehhc
Confidence 99999988877654
No 335
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.95 E-value=2.2e-06 Score=83.90 Aligned_cols=176 Identities=13% Similarity=0.139 Sum_probs=116.4
Q ss_pred eeEEEEeCCCcEEEEecCCceEE---EEeecCCCeeEEEECC-CCCEEEEEe----cCCcEEEEECCCC--ce--eEeee
Q 013184 250 IHFMASNNDCGVRDFDMERFQLS---KHFSFPWPVNHTSLSP-DGKLLVIVG----DNPEGILVDSQTG--KA--IMPLC 317 (448)
Q Consensus 250 ~~l~s~s~dg~v~iwd~~~~~~~---~~~~~~~~v~~~~~sp-~~~~l~~~~----~d~~i~i~d~~~~--~~--~~~l~ 317 (448)
-++++|..+|.|-+-.++...-. .+-.+..+.++++|++ |...||+|- .+..+.|||+.++ .+ -..+.
T Consensus 71 cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs 150 (783)
T KOG1008|consen 71 CILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFS 150 (783)
T ss_pred hhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccc
Confidence 36788888899988876542211 1222678899999999 667777774 3567999999876 22 12233
Q ss_pred c-CCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEC-CC
Q 013184 318 G-HLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTS-DGNFMAMAEPADFVHVYDA-KN 394 (448)
Q Consensus 318 ~-h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp-~g~~l~s~~~d~~v~vwd~-~~ 394 (448)
+ ......+++|..+.+++.+|...+.+.++|+|. .+.....-....+..+..+| .+.|+++-. +|.|.+||. ..
T Consensus 151 ~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRq--s~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rn 227 (783)
T KOG1008|consen 151 SSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQ--SLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRN 227 (783)
T ss_pred cccccCccccccccCcchhhcccccchhhhhhhhh--hhhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhh
Confidence 2 445566899999999999999999999999984 33333333344566777888 677877755 899999993 22
Q ss_pred CceeeeeecCc-----CceEEEEEccCCC-eEEEEEecCC
Q 013184 395 GFEKEQEIDFF-----GEISGMTFSPDTE-ALFIGVWDRT 428 (448)
Q Consensus 395 ~~~~~~~~~~~-----~~v~~~~fspdg~-~L~~~~~D~~ 428 (448)
-+...+...|. ..+..++|.|... .|++..-|..
T Consensus 228 ienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~ 267 (783)
T KOG1008|consen 228 IENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSI 267 (783)
T ss_pred hccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcc
Confidence 22222222222 3489999999543 4455554443
No 336
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.91 E-value=0.02 Score=58.10 Aligned_cols=263 Identities=15% Similarity=0.106 Sum_probs=141.4
Q ss_pred CCeEEEec-CCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEecC-CEEEEEeCCCeEEEEEcCCC
Q 013184 144 KHDVYLMS-HFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAVRD-NLLIAGGFQGELICKYLDQP 221 (448)
Q Consensus 144 ~~~v~~~~-~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~~~-~~lvsg~~dg~i~vw~~~~~ 221 (448)
.+.||+.. ++.|.-.|..+++..-..+......+. .+. .....++..+ ..++.++.+|.|..+|..+.
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~--~~~--------~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG 130 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRG--CCD--------VVNRGVAYWDPRKVFFGTFDGRLVALDAETG 130 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCcccc--ccc--------cccCCcEEccCCeEEEecCCCeEEEEECCCC
Confidence 44566654 566777787666544333322110000 000 0001223434 78888899999999999887
Q ss_pred CceeEEEeecCC---CCceeeEEEEeCCCCCeeEEEEe---------CCCcEEEEecCCceEEEEeecCCC---------
Q 013184 222 GVSFCSRTTYDE---NAITNAVEIYNSPSGGIHFMASN---------NDCGVRDFDMERFQLSKHFSFPWP--------- 280 (448)
Q Consensus 222 ~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~s~s---------~dg~v~iwd~~~~~~~~~~~~~~~--------- 280 (448)
+........... ..+.....+. +. +++.++ .++.|..+|..+++.+..+....+
T Consensus 131 ~~~W~~~~~~~~~~~~~i~ssP~v~----~~-~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~ 205 (488)
T cd00216 131 KQVWKFGNNDQVPPGYTMTGAPTIV----KK-LVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWG 205 (488)
T ss_pred CEeeeecCCCCcCcceEecCCCEEE----CC-EEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCC
Confidence 754333322110 0011111221 12 344443 368899999999998887763210
Q ss_pred ------------e-eEEEECCCCCEEEEEecCC------------------cEEEEECCCCceeEeeec--CCC----cE
Q 013184 281 ------------V-NHTSLSPDGKLLVIVGDNP------------------EGILVDSQTGKAIMPLCG--HLD----FS 323 (448)
Q Consensus 281 ------------v-~~~~~sp~~~~l~~~~~d~------------------~i~i~d~~~~~~~~~l~~--h~~----~v 323 (448)
+ ...++.+.+.++++++.++ .+.-+|..+|+.+...+. |.. ..
T Consensus 206 ~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~ 285 (488)
T cd00216 206 PDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGP 285 (488)
T ss_pred CCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccC
Confidence 0 1234444567788887665 689999999998876542 211 00
Q ss_pred EEEEEc----CCCC---EEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEE----------------
Q 013184 324 FASAWH----PDGR---IFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAM---------------- 380 (448)
Q Consensus 324 ~~~~~~----p~g~---~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s---------------- 380 (448)
....+. -+|. .++.++.+|.+...|.++ ++.+-..... ...+..+| +...+.
T Consensus 286 s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~t-G~~~W~~~~~---~~~~~~~~-~~vyv~~~~~~~~~~~~~~~~~ 360 (488)
T cd00216 286 NQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTT-GKLISARPEV---EQPMAYDP-GLVYLGAFHIPLGLPPQKKKRC 360 (488)
T ss_pred CCCeEEeccccCCCeeEEEEEECCCceEEEEECCC-CcEeeEeEee---ccccccCC-ceEEEccccccccCcccccCCC
Confidence 001111 1333 677888899999999987 6655433211 11233344 222221
Q ss_pred -EeCCCeEEEEECCCCceeeeeecCc--------Cce--EEEEEccCCCeEEEEEecCC
Q 013184 381 -AEPADFVHVYDAKNGFEKEQEIDFF--------GEI--SGMTFSPDTEALFIGVWDRT 428 (448)
Q Consensus 381 -~~~d~~v~vwd~~~~~~~~~~~~~~--------~~v--~~~~fspdg~~L~~~~~D~~ 428 (448)
...+|.|.-.|+.+|+.+-+..... .+. ..++ -.+..|++++.|+.
T Consensus 361 ~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~--~~g~~v~~g~~dG~ 417 (488)
T cd00216 361 KKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLA--TAGNLVFAGAADGY 417 (488)
T ss_pred CCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceE--ecCCeEEEECCCCe
Confidence 1235788888998888775544220 111 1122 24567777776643
No 337
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.91 E-value=0.0061 Score=54.09 Aligned_cols=139 Identities=11% Similarity=0.016 Sum_probs=91.2
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEeecCCC
Q 013184 201 DNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFSFPWP 280 (448)
Q Consensus 201 ~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~ 280 (448)
..+++.|+..|.+..-|..+++......+ . ..+.+-.+. -|. .++.|...|.+++.+..+|.....+.--..
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~il--g--~RiE~sa~v---vgd-fVV~GCy~g~lYfl~~~tGs~~w~f~~~~~ 94 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAIL--G--VRIECSAIV---VGD-FVVLGCYSGGLYFLCVKTGSQIWNFVILET 94 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhh--C--ceeeeeeEE---ECC-EEEEEEccCcEEEEEecchhheeeeeehhh
Confidence 45677888888888888777664432221 1 111111121 133 689999999999999999988777774444
Q ss_pred eeE-EEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEE
Q 013184 281 VNH-TSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVW 347 (448)
Q Consensus 281 v~~-~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iw 347 (448)
|.+ ....+++.++..++.|++.+..|.++..++...+.......+-+..|-...|..+...|.+.--
T Consensus 95 vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlav 162 (354)
T KOG4649|consen 95 VKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAV 162 (354)
T ss_pred hccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEE
Confidence 433 3456789999999999999999999999988876443333344566633334444444544433
No 338
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.91 E-value=0.0012 Score=58.35 Aligned_cols=140 Identities=14% Similarity=0.048 Sum_probs=100.0
Q ss_pred CCCCeeEEEEeCCCcEEEEecCCceEEEEeecCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEE
Q 013184 246 PSGGIHFMASNNDCGVRDFDMERFQLSKHFSFPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFA 325 (448)
Q Consensus 246 ~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~ 325 (448)
++.+.+++.|+..+.+.-.|..+|++.........|.+-+.- -|++++.|+..|.+++.+.++|.....+..-..--..
T Consensus 20 ~dskT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~ 98 (354)
T KOG4649|consen 20 NDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVR 98 (354)
T ss_pred cCCceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccc
Confidence 455668999999999999999999988776655555543333 4788999999999999999999887776643222223
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 013184 326 SAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFV 387 (448)
Q Consensus 326 ~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v 387 (448)
....+++.++..|+.|++.+..|.++ ..++...+...+...+-+..|-...|..+...|.|
T Consensus 99 a~~d~~~glIycgshd~~~yalD~~~-~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~v 159 (354)
T KOG4649|consen 99 AQCDFDGGLIYCGSHDGNFYALDPKT-YGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAV 159 (354)
T ss_pred eEEcCCCceEEEecCCCcEEEecccc-cceEEecccCCceeccceecCCCceEEEEeccceE
Confidence 45678999999999999999999987 77887776554444444555522233333344433
No 339
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.87 E-value=0.004 Score=60.72 Aligned_cols=226 Identities=12% Similarity=0.031 Sum_probs=123.4
Q ss_pred eeEEEEe--cCCEEEEEeCCCeEEEEEcCCCCcee----------------------------------------EEEee
Q 013184 193 QVSTLAV--RDNLLIAGGFQGELICKYLDQPGVSF----------------------------------------CSRTT 230 (448)
Q Consensus 193 ~i~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~----------------------------------------~~~~~ 230 (448)
.|+.+++ ...-|++|...|.|.+|.+...+... ...+.
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 4677766 66889999999999999875432110 00011
Q ss_pred cCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee---------cCCCeeEEEECC-----CC---CEE
Q 013184 231 YDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS---------FPWPVNHTSLSP-----DG---KLL 293 (448)
Q Consensus 231 ~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~---------~~~~v~~~~~sp-----~~---~~l 293 (448)
....+.+.+++. +.-| .++.|..+|.+.|.|++...++..-. ....|+++.|+. |+ -.+
T Consensus 83 ~~~~g~vtal~~--S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L 158 (395)
T PF08596_consen 83 DAKQGPVTALKN--SDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICL 158 (395)
T ss_dssp ---S-SEEEEEE---BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEE
T ss_pred eccCCcEeEEec--CCCc--EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEE
Confidence 112344555555 4444 78999999999999998877776533 123577888762 33 478
Q ss_pred EEEecCCcEEEEECC--C-Ccee----EeeecCCCcEEEEE-EcCC-C-------------------CEEEEEeCCCcEE
Q 013184 294 VIVGDNPEGILVDSQ--T-GKAI----MPLCGHLDFSFASA-WHPD-G-------------------RIFATGNQDKTCR 345 (448)
Q Consensus 294 ~~~~~d~~i~i~d~~--~-~~~~----~~l~~h~~~v~~~~-~~p~-g-------------------~~l~s~~~d~~i~ 345 (448)
++|...|.+.+|.+. . +... .....+.+.+..+. ++.+ | +-++....+..+|
T Consensus 159 ~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~ir 238 (395)
T PF08596_consen 159 LVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIR 238 (395)
T ss_dssp EEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEE
T ss_pred EEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceE
Confidence 888999999999764 1 2221 11223556665554 3221 1 1233334456799
Q ss_pred EEEccCCCcceEEEccCCCCeEEEEEc-----CCCCEEEEEeCCCeEEEEECCCCceeeeeecCc----CceEEEEEccC
Q 013184 346 VWDVRNLSKSVAVLKGNLGAIRSIRFT-----SDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFF----GEISGMTFSPD 416 (448)
Q Consensus 346 iwd~~~~~~~~~~~~~~~~~v~~l~~s-----p~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~----~~v~~~~fspd 416 (448)
++..-+ .+..+......-....+.+- ..+..|++-..+|.|++|.+...+.+....-.. ..+...+|+++
T Consensus 239 v~~~~~-~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~ 317 (395)
T PF08596_consen 239 VFKPPK-SKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRN 317 (395)
T ss_dssp EE-TT----EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TT
T ss_pred EEeCCC-CcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCC
Confidence 998876 44444333222223334442 356788888999999999999988876655422 34567788999
Q ss_pred CCeEEEE
Q 013184 417 TEALFIG 423 (448)
Q Consensus 417 g~~L~~~ 423 (448)
|+.++-.
T Consensus 318 Gdi~~~~ 324 (395)
T PF08596_consen 318 GDIFYWT 324 (395)
T ss_dssp S-EEEE-
T ss_pred CCEEEEe
Confidence 9977654
No 340
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.86 E-value=0.0025 Score=64.29 Aligned_cols=133 Identities=17% Similarity=0.230 Sum_probs=92.2
Q ss_pred CCCCeeEEEEeCCCcEEEEecCC-----ceEEEEeecCCCeeEEEECCCCCEEEEEe-cCCcEEEEECCCCce-------
Q 013184 246 PSGGIHFMASNNDCGVRDFDMER-----FQLSKHFSFPWPVNHTSLSPDGKLLVIVG-DNPEGILVDSQTGKA------- 312 (448)
Q Consensus 246 ~~~~~~l~s~s~dg~v~iwd~~~-----~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~i~i~d~~~~~~------- 312 (448)
++|+..++ .++.|.++|..+ .+.+..+..+.....+.++|||+++++++ .+++|.++|+.+.+.
T Consensus 286 kdGK~~~V---~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~ 362 (635)
T PRK02888 286 KAGKFKTI---GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIK 362 (635)
T ss_pred hCCCEEEE---CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCC
Confidence 45653343 357899999988 56777788888889999999999988776 488999999987552
Q ss_pred -----eEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCC---------CcceEEEccCCCCeE-----EEEEcC
Q 013184 313 -----IMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNL---------SKSVAVLKGNLGAIR-----SIRFTS 373 (448)
Q Consensus 313 -----~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~---------~~~~~~~~~~~~~v~-----~l~~sp 373 (448)
+.+..--.+ ....+|.++|+...|-.-|..|..|++... ...+..+.-|-.+.. .=.-.|
T Consensus 363 ~~~~vvaevevGlG-PLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~ 441 (635)
T PRK02888 363 PRDAVVAEPELGLG-PLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEA 441 (635)
T ss_pred ccceEEEeeccCCC-cceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCC
Confidence 333332223 346789999998888899999999998641 123344443333221 112367
Q ss_pred CCCEEEEEe
Q 013184 374 DGNFMAMAE 382 (448)
Q Consensus 374 ~g~~l~s~~ 382 (448)
+|+||++..
T Consensus 442 dgk~l~~~n 450 (635)
T PRK02888 442 DGKWLVSLN 450 (635)
T ss_pred CCCEEEEcc
Confidence 888888763
No 341
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.84 E-value=0.016 Score=54.43 Aligned_cols=218 Identities=16% Similarity=0.113 Sum_probs=120.3
Q ss_pred eeeCCCCeEEEe--cCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCCCeEE
Q 013184 139 VWSTSKHDVYLM--SHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQGELI 214 (448)
Q Consensus 139 ~~~~~~~~v~~~--~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~dg~i~ 214 (448)
+|.+....++++ ..+.|..|+..++...... ..+. +.++.. .+..|+++... +.
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~-~p~~-------------------~~~~~~~d~~g~Lv~~~~g--~~ 88 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKRVFP-SPGG-------------------FSSGALIDAGGRLIACEHG--VR 88 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceEEEE-CCCC-------------------cccceeecCCCeEEEEccc--cE
Confidence 566777767776 4667999997655443332 2211 233333 34445544333 34
Q ss_pred EEEcCCCCc-eeEEEee-cCCCCceeeEEEEeCCCCCeeEEEEe-----C-----CCcEEEEecCCceEEEEee-cCCCe
Q 013184 215 CKYLDQPGV-SFCSRTT-YDENAITNAVEIYNSPSGGIHFMASN-----N-----DCGVRDFDMERFQLSKHFS-FPWPV 281 (448)
Q Consensus 215 vw~~~~~~~-~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~s~s-----~-----dg~v~iwd~~~~~~~~~~~-~~~~v 281 (448)
+++.+.... ....... .......|-..+ .|+|...+-+.+ . -|.|+.++. .+..++.+. +-..-
T Consensus 89 ~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v--~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~ 165 (307)
T COG3386 89 LLDPDTGGKITLLAEPEDGLPLNRPNDGVV--DPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIP 165 (307)
T ss_pred EEeccCCceeEEeccccCCCCcCCCCceeE--cCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEec
Confidence 556544443 2211111 111122334444 677763322222 1 133555554 455555544 35567
Q ss_pred eEEEECCCCCEEEEEec-CCcEEEEECCC--Cc----e-eEeeecCCCcEEEEEEcCCCCEEEEEeCCC-cEEEEEccCC
Q 013184 282 NHTSLSPDGKLLVIVGD-NPEGILVDSQT--GK----A-IMPLCGHLDFSFASAWHPDGRIFATGNQDK-TCRVWDVRNL 352 (448)
Q Consensus 282 ~~~~~sp~~~~l~~~~~-d~~i~i~d~~~--~~----~-~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~-~i~iwd~~~~ 352 (448)
|.++|||+++.++++-. .+.|.-++... +. . ...+....+..-.++...+|.+.+++-..| .|.+|+..
T Consensus 166 NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-- 243 (307)
T COG3386 166 NGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-- 243 (307)
T ss_pred CceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC--
Confidence 89999999998887755 36777776541 21 1 112222334445677778888776555544 89999986
Q ss_pred CcceEEEccCCCCeEEEEEc-CCCCEEEEEeC
Q 013184 353 SKSVAVLKGNLGAIRSIRFT-SDGNFMAMAEP 383 (448)
Q Consensus 353 ~~~~~~~~~~~~~v~~l~~s-p~g~~l~s~~~ 383 (448)
++.+..+.-....+++++|- |+.+.|.+.+.
T Consensus 244 G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 244 GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred CcEEEEEECCCCCCccceEeCCCcCEEEEEec
Confidence 67777777666777888884 44555544443
No 342
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.80 E-value=0.029 Score=53.53 Aligned_cols=184 Identities=12% Similarity=0.141 Sum_probs=105.7
Q ss_pred CCEEEEEeC----------CCeEEEEEcCCC---CceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecC
Q 013184 201 DNLLIAGGF----------QGELICKYLDQP---GVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDME 267 (448)
Q Consensus 201 ~~~lvsg~~----------dg~i~vw~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~ 267 (448)
..++++|+. .|.|.++.+... ...+.........+.+.+++.+ ++ .|+++. .+.|.+|++.
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~----~~-~lv~~~-g~~l~v~~l~ 115 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF----NG-RLVVAV-GNKLYVYDLD 115 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE----TT-EEEEEE-TTEEEEEEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh----CC-EEEEee-cCEEEEEEcc
Confidence 467777764 299999999884 1222222223345667777653 34 344444 4789999998
Q ss_pred Cce-EEEEeecCCCeeEEEECCCCCEEEEEecCCcEEEEECCC-CceeEeee--cCCCcEEEEEEcCCCCEEEEEeCCCc
Q 013184 268 RFQ-LSKHFSFPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQT-GKAIMPLC--GHLDFSFASAWHPDGRIFATGNQDKT 343 (448)
Q Consensus 268 ~~~-~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~-~~~~~~l~--~h~~~v~~~~~~p~g~~l~s~~~d~~ 343 (448)
..+ +...-.+..++..++....++++++|.....+.++..+. ++.+..+. .....++++.+-+++..++.+..+|.
T Consensus 116 ~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gn 195 (321)
T PF03178_consen 116 NSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGN 195 (321)
T ss_dssp TTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSE
T ss_pred CcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCe
Confidence 777 555544444334444444467999998877888764332 22232222 23456888888877789999999999
Q ss_pred EEEEEccCC------C--cceEEEccCC-CCeEEE---EEcC--CCC------EEEEEeCCCeEEEE
Q 013184 344 CRVWDVRNL------S--KSVAVLKGNL-GAIRSI---RFTS--DGN------FMAMAEPADFVHVY 390 (448)
Q Consensus 344 i~iwd~~~~------~--~~~~~~~~~~-~~v~~l---~~sp--~g~------~l~s~~~d~~v~vw 390 (448)
+.++..... + ........|. ..|+++ ++.| .+. .++.++.+|.|.+.
T Consensus 196 l~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 196 LFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp EEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred EEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 999987521 1 1222222233 356666 4445 222 47888888888733
No 343
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.79 E-value=0.0026 Score=61.62 Aligned_cols=178 Identities=21% Similarity=0.185 Sum_probs=101.8
Q ss_pred CCcEEEEecCCceEEEEeecCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEee-ec-------C---------C
Q 013184 258 DCGVRDFDMERFQLSKHFSFPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPL-CG-------H---------L 320 (448)
Q Consensus 258 dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l-~~-------h---------~ 320 (448)
.+.+.++|+++++..........+....|||+|+.++.+.. +.|.+++..+++..+.- .| - .
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~~-~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~ 100 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVRD-NNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVF 100 (353)
T ss_dssp EEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEET-TEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTS
T ss_pred ceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEec-CceEEEECCCCCeEEeccccceeEEcCccceecccccc
Confidence 46789999999887666555678899999999999998865 58999988777544321 12 0 1
Q ss_pred CcEEEEEEcCCCCEEEEEeCCC-c-----------------------------------EEEEEccCCCcce--EEE---
Q 013184 321 DFSFASAWHPDGRIFATGNQDK-T-----------------------------------CRVWDVRNLSKSV--AVL--- 359 (448)
Q Consensus 321 ~~v~~~~~~p~g~~l~s~~~d~-~-----------------------------------i~iwd~~~~~~~~--~~~--- 359 (448)
+.-.++.|||||++||....|. . +.|+|+.+ ++.. ...
T Consensus 101 ~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~-~~~~~~~~~~~~ 179 (353)
T PF00930_consen 101 DRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLAS-GKTTELDPPNSL 179 (353)
T ss_dssp SSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSS-TCCCEE---HHH
T ss_pred ccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCC-CcEEEeeecccc
Confidence 1224688999999988774321 1 22344432 1111 111
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEeC--C---CeEEEEECCCCceeeeeec-CcC---ceEEEEEc-cCCCeEEEEEecCCc
Q 013184 360 KGNLGAIRSIRFTSDGNFMAMAEP--A---DFVHVYDAKNGFEKEQEID-FFG---EISGMTFS-PDTEALFIGVWDRTY 429 (448)
Q Consensus 360 ~~~~~~v~~l~~sp~g~~l~s~~~--d---~~v~vwd~~~~~~~~~~~~-~~~---~v~~~~fs-pdg~~L~~~~~D~~~ 429 (448)
.....-+..+.|+++++.|+..-. + -.+.++|..++........ ..+ ....+.|. +++..++..+.-...
T Consensus 180 ~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~ 259 (353)
T PF00930_consen 180 NPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGY 259 (353)
T ss_dssp HTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSS
T ss_pred CCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCC
Confidence 122335788999999984444322 2 2577788877655433222 222 23356665 666655554443234
Q ss_pred ceEEEEec
Q 013184 430 GSLLQYNR 437 (448)
Q Consensus 430 ~~ll~~~~ 437 (448)
..|..+..
T Consensus 260 ~hly~~~~ 267 (353)
T PF00930_consen 260 RHLYLYDL 267 (353)
T ss_dssp EEEEEEET
T ss_pred cEEEEEcc
Confidence 45544443
No 344
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.78 E-value=0.025 Score=55.32 Aligned_cols=211 Identities=16% Similarity=0.161 Sum_probs=138.3
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEe--CCCcEEEEecCCceEEEEeecC
Q 013184 201 DNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASN--NDCGVRDFDMERFQLSKHFSFP 278 (448)
Q Consensus 201 ~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s--~dg~v~iwd~~~~~~~~~~~~~ 278 (448)
.+.++....+..|.+.+......... ..... ....+.+ +++++...++-. .++++.+.|..+++........
T Consensus 86 ~~vyv~~~~~~~v~vid~~~~~~~~~--~~vG~--~P~~~~~--~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG 159 (381)
T COG3391 86 NKVYVTTGDSNTVSVIDTATNTVLGS--IPVGL--GPVGLAV--DPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVG 159 (381)
T ss_pred CeEEEecCCCCeEEEEcCcccceeeE--eeecc--CCceEEE--CCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecC
Confidence 34667777778999998665543322 21121 2334444 888876666655 4789999999999988886533
Q ss_pred CCeeEEEECCCCCEEEEEe-cCCcEEEEECCCCceeE-e---eecCCCcEEEEEEcCCCCEEEEEeCC---CcEEEEEcc
Q 013184 279 WPVNHTSLSPDGKLLVIVG-DNPEGILVDSQTGKAIM-P---LCGHLDFSFASAWHPDGRIFATGNQD---KTCRVWDVR 350 (448)
Q Consensus 279 ~~v~~~~~sp~~~~l~~~~-~d~~i~i~d~~~~~~~~-~---l~~h~~~v~~~~~~p~g~~l~s~~~d---~~i~iwd~~ 350 (448)
..-..+++.|+|+.+++.. .++.+.+.|..+..... . ...-......+.++|+|.++...... +.+...|..
T Consensus 160 ~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~ 239 (381)
T COG3391 160 NTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTA 239 (381)
T ss_pred CCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCC
Confidence 3238999999999777665 78899999977665553 1 01122333568999999977666554 488888886
Q ss_pred CCCcceEE-EccCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEECCCCceeeeeecCc---CceEEEEEccCCC
Q 013184 351 NLSKSVAV-LKGNLGAIRSIRFTSDGNFMAMAEP-ADFVHVYDAKNGFEKEQEIDFF---GEISGMTFSPDTE 418 (448)
Q Consensus 351 ~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~s~~~-d~~v~vwd~~~~~~~~~~~~~~---~~v~~~~fspdg~ 418 (448)
+ +..... ..........+..+|+|.++.++.. .+.|.+.|..+........... +.+..+++.+...
T Consensus 240 ~-~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 311 (381)
T COG3391 240 T-GNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPLYD 311 (381)
T ss_pred C-ceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceeecc
Confidence 5 333332 2222214567899999999988854 4889999988876665443322 3466677766543
No 345
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.77 E-value=0.0003 Score=70.15 Aligned_cols=138 Identities=12% Similarity=0.137 Sum_probs=101.1
Q ss_pred cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeE-eeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcc
Q 013184 277 FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIM-PLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKS 355 (448)
Q Consensus 277 ~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~-~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~ 355 (448)
++..|.-.++...+++++.|+.-|.+++|+...++... ...+....+..+..+++..++|.|++.|.|.++-+.+....
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 44556666777789999999999999999987776433 23334455667788999999999999999999988763222
Q ss_pred eEEE-----ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC-c---eeeeeecCcCceEEEEEc
Q 013184 356 VAVL-----KGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNG-F---EKEQEIDFFGEISGMTFS 414 (448)
Q Consensus 356 ~~~~-----~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~-~---~~~~~~~~~~~v~~~~fs 414 (448)
-..+ +.|...|++++|+++|..+.+|...|.|..-.+.+. . ....+....++|-.+...
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL 179 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence 2111 225678999999999999999999999999887761 1 112233455677777765
No 346
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=0.00016 Score=71.15 Aligned_cols=96 Identities=19% Similarity=0.251 Sum_probs=78.7
Q ss_pred cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEE-EEEEcCCCCEEEEEeCCCcEEEEEccCCCcc
Q 013184 277 FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSF-ASAWHPDGRIFATGNQDKTCRVWDVRNLSKS 355 (448)
Q Consensus 277 ~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~-~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~ 355 (448)
.+..|.-+.|+|.-.++|++..+|.+.+.... .+.+.++.-|...+. +++|.|||+.||.|-.||+|++-|+.++...
T Consensus 19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred cccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 45568889999999999999999999999877 777888886776676 9999999999999999999999999874433
Q ss_pred eEEEccCCCCeEEEEEcC
Q 013184 356 VAVLKGNLGAIRSIRFTS 373 (448)
Q Consensus 356 ~~~~~~~~~~v~~l~~sp 373 (448)
.........+|.++-|+|
T Consensus 98 ~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWDR 115 (665)
T ss_pred eccccccccchheeeccc
Confidence 333334456788888864
No 347
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.73 E-value=0.0016 Score=63.20 Aligned_cols=143 Identities=17% Similarity=0.244 Sum_probs=103.2
Q ss_pred CCCeeEEEEeCCCcEEEEecCCceEEEEeecCCCeeEEEECCCCC-------EEEEEecCCcEEEEECCCC-c-eeEeee
Q 013184 247 SGGIHFMASNNDCGVRDFDMERFQLSKHFSFPWPVNHTSLSPDGK-------LLVIVGDNPEGILVDSQTG-K-AIMPLC 317 (448)
Q Consensus 247 ~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~-------~l~~~~~d~~i~i~d~~~~-~-~~~~l~ 317 (448)
+.+.++.++.....|+-.|++.|+++........|+-+.+.|+.+ .-++|-.+..|.-||++-. + .+...+
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q 423 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQ 423 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeee
Confidence 445567778888889999999999999998666688888988653 2344667778999998732 2 222223
Q ss_pred cCC----CcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 013184 318 GHL----DFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDA 392 (448)
Q Consensus 318 ~h~----~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~ 392 (448)
+|. ....|.+-..+| +|++|+.+|.||+||- ........+++-..+|..+..+.+|++|++.+. ..+.+.++
T Consensus 424 ~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~-tyLlLi~t 499 (644)
T KOG2395|consen 424 SKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCK-TYLLLIDT 499 (644)
T ss_pred ccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecc-cEEEEEEE
Confidence 332 223344444444 8999999999999997 435556678888899999999999999887654 45666664
No 348
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.73 E-value=0.052 Score=52.58 Aligned_cols=253 Identities=15% Similarity=0.099 Sum_probs=133.0
Q ss_pred CeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEecCCEEEEEeCCCeEEEEEcCCCCceeEEEeecC
Q 013184 153 FSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAVRDNLLIAGGFQGELICKYLDQPGVSFCSRTTYD 232 (448)
Q Consensus 153 ~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~ 232 (448)
+.+.++++.++....+....+. .+-..++.+|+.++... ++.|.++++..... .+++..
T Consensus 23 ~~y~i~d~~~~~~~~l~~~~~~-----------------~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~---~~lT~d 81 (353)
T PF00930_consen 23 GDYYIYDIETGEITPLTPPPPK-----------------LQDAKWSPDGKYIAFVR-DNNLYLRDLATGQE---TQLTTD 81 (353)
T ss_dssp EEEEEEETTTTEEEESS-EETT-----------------BSEEEE-SSSTEEEEEE-TTEEEEESSTTSEE---EESES-
T ss_pred eeEEEEecCCCceEECcCCccc-----------------cccceeecCCCeeEEEe-cCceEEEECCCCCe---EEeccc
Confidence 3567888877555544322110 12344555888777765 56788887655521 222211
Q ss_pred C-CCc--------------eeeEEEEeCCCCCeeEEEEeCCCcEEEE---------------------------------
Q 013184 233 E-NAI--------------TNAVEIYNSPSGGIHFMASNNDCGVRDF--------------------------------- 264 (448)
Q Consensus 233 ~-~~~--------------~~~v~~~~~~~~~~~l~s~s~dg~v~iw--------------------------------- 264 (448)
. ..+ -....++++|++..+++..-++..|+.+
T Consensus 82 g~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~ 161 (353)
T PF00930_consen 82 GEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLF 161 (353)
T ss_dssp -TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEE
T ss_pred cceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEE
Confidence 1 111 1122345699998665555555544444
Q ss_pred --ecCCceEEEE--e----ecCCCeeEEEECCCCCEEEEEec--C---CcEEEEECCCCceeEeeec-CC---CcEEEEE
Q 013184 265 --DMERFQLSKH--F----SFPWPVNHTSLSPDGKLLVIVGD--N---PEGILVDSQTGKAIMPLCG-HL---DFSFASA 327 (448)
Q Consensus 265 --d~~~~~~~~~--~----~~~~~v~~~~~sp~~~~l~~~~~--d---~~i~i~d~~~~~~~~~l~~-h~---~~v~~~~ 327 (448)
++.+++.... . .....+..+.|.++++.|++.-. + ..+.++|..+++....+.. .. .......
T Consensus 162 v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~ 241 (353)
T PF00930_consen 162 VVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPH 241 (353)
T ss_dssp EEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEE
T ss_pred EEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccc
Confidence 3322221100 0 01233667888888884444432 2 2466678877765333321 11 1122444
Q ss_pred Ec-CCCC-EEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEE-EEEcCCCCEEE-EEeCC----CeEEEEECCCCceee
Q 013184 328 WH-PDGR-IFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRS-IRFTSDGNFMA-MAEPA----DFVHVYDAKNGFEKE 399 (448)
Q Consensus 328 ~~-p~g~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~-l~~sp~g~~l~-s~~~d----~~v~vwd~~~~~~~~ 399 (448)
|. +++. +|.....+|--+||-+...+.....++...-.|.. +.|+++++.|. +|..+ ..|+..++..+..+.
T Consensus 242 ~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~ 321 (353)
T PF00930_consen 242 FLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPK 321 (353)
T ss_dssp E-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEE
T ss_pred cccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeE
Confidence 44 5554 55566688877777666545666677766667744 77888877665 44432 256666766233444
Q ss_pred eeecCcCceEEEEEccCCCeEEEEEec
Q 013184 400 QEIDFFGEISGMTFSPDTEALFIGVWD 426 (448)
Q Consensus 400 ~~~~~~~~v~~~~fspdg~~L~~~~~D 426 (448)
.+....+.-..++|||+|++++.....
T Consensus 322 ~LT~~~~~~~~~~~Spdg~y~v~~~s~ 348 (353)
T PF00930_consen 322 CLTCEDGDHYSASFSPDGKYYVDTYSG 348 (353)
T ss_dssp ESSTTSSTTEEEEE-TTSSEEEEEEES
T ss_pred eccCCCCCceEEEECCCCCEEEEEEcC
Confidence 444433333699999999999876654
No 349
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.71 E-value=0.00083 Score=70.05 Aligned_cols=123 Identities=17% Similarity=0.180 Sum_probs=88.9
Q ss_pred cCCcEEEEECCCCceeEeeecCCCc-EEEEEEcCC-------CCEEEEEeCCCcEEEEEccCCCcceEEEcc----CCCC
Q 013184 298 DNPEGILVDSQTGKAIMPLCGHLDF-SFASAWHPD-------GRIFATGNQDKTCRVWDVRNLSKSVAVLKG----NLGA 365 (448)
Q Consensus 298 ~d~~i~i~d~~~~~~~~~l~~h~~~-v~~~~~~p~-------g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~----~~~~ 365 (448)
....++-.|+..|+.+..+..|.+. |..+ .|+ ....+.|-.+..+..||.|-.+..+..-.. ....
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~ 579 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNN 579 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCC
Confidence 4578999999999999999987754 5444 443 234556777778999999974432222111 2335
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCCcee-eeeecCcCceEEEEEccCCCeEEEEE
Q 013184 366 IRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEK-EQEIDFFGEISGMTFSPDTEALFIGV 424 (448)
Q Consensus 366 v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~-~~~~~~~~~v~~~~fspdg~~L~~~~ 424 (448)
..|++-+.+| +||+|+.+|.||+|| +.|... ..+++...+|.+|..+.||++|++.+
T Consensus 580 Fs~~aTt~~G-~iavgs~~G~IRLyd-~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc 637 (794)
T PF08553_consen 580 FSCFATTEDG-YIAVGSNKGDIRLYD-RLGKRAKTALPGLGDPIIGIDVTADGKWILATC 637 (794)
T ss_pred ceEEEecCCc-eEEEEeCCCcEEeec-ccchhhhhcCCCCCCCeeEEEecCCCcEEEEee
Confidence 6777777666 789999999999999 455443 34556778999999999999998765
No 350
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.69 E-value=0.03 Score=55.52 Aligned_cols=216 Identities=12% Similarity=0.087 Sum_probs=115.8
Q ss_pred ccceeeeCCCCeEEEecCCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe-cCCEEEEEeCCCeE
Q 013184 135 LRNLVWSTSKHDVYLMSHFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV-RDNLLIAGGFQGEL 213 (448)
Q Consensus 135 ~r~l~~~~~~~~v~~~~~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~-~~~~lvsg~~dg~i 213 (448)
.+.+...|+++.|.+++++.-.++.....+.... .. -..+.| ..+.+|+-...++|
T Consensus 35 p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~--G~---------------------g~~~vw~~~n~yAv~~~~~~I 91 (443)
T PF04053_consen 35 PQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAF--GS---------------------GLSFVWSSRNRYAVLESSSTI 91 (443)
T ss_dssp -SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEE--EE----------------------SEEEE-TSSEEEEE-TTS-E
T ss_pred CeeEEECCCCCEEEEEcCCEEEEEEccCCccccc--Cc---------------------eeEEEEecCccEEEEECCCeE
Confidence 5677788899999998888877777433222221 11 223334 45667777778888
Q ss_pred EEE-EcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEeecCCCeeEEEECCCCCE
Q 013184 214 ICK-YLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFSFPWPVNHTSLSPDGKL 292 (448)
Q Consensus 214 ~vw-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~ 292 (448)
.++ ++...... .+... ..+-.++. |. +|...+. +.|.+||.++++.++.+.... |..+.|+++|.+
T Consensus 92 ~I~kn~~~~~~k---~i~~~----~~~~~If~---G~-LL~~~~~-~~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~ 158 (443)
T PF04053_consen 92 KIYKNFKNEVVK---SIKLP----FSVEKIFG---GN-LLGVKSS-DFICFYDWETGKLIRRIDVSA-VKYVIWSDDGEL 158 (443)
T ss_dssp EEEETTEE-TT--------S----S-EEEEE----SS-SEEEEET-TEEEEE-TTT--EEEEESS-E--EEEEE-TTSSE
T ss_pred EEEEcCccccce---EEcCC----cccceEEc---Cc-EEEEECC-CCEEEEEhhHcceeeEEecCC-CcEEEEECCCCE
Confidence 884 44332211 11111 12233322 54 5555554 489999999999999998664 899999999999
Q ss_pred EEEEecCCcEEEEECCCC-----------ceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEcc
Q 013184 293 LVIVGDNPEGILVDSQTG-----------KAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKG 361 (448)
Q Consensus 293 l~~~~~d~~i~i~d~~~~-----------~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 361 (448)
++..+.+ .+.|++.... .....+..-...|.+.+|..+ .|+-.+.. .++. +.+ ....++..
T Consensus 159 val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~--Ge~~~i~~ 230 (443)
T PF04053_consen 159 VALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVN--GETGIIAH 230 (443)
T ss_dssp EEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EET--TEEEEEEE
T ss_pred EEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEc--CCcceEEE
Confidence 9999877 6777764332 023333322567888899765 44444444 6776 322 22333333
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 013184 362 NLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKN 394 (448)
Q Consensus 362 ~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~ 394 (448)
-..++.=+.+.|....|.....++.|..+.+..
T Consensus 231 ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 231 LDKPLYLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp -SS--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred cCCceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 345677778888777788778888888877653
No 351
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.69 E-value=0.022 Score=56.43 Aligned_cols=204 Identities=14% Similarity=0.137 Sum_probs=104.1
Q ss_pred EEEEe--cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEE
Q 013184 195 STLAV--RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLS 272 (448)
Q Consensus 195 ~~l~~--~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~ 272 (448)
.+|+. +++.+++ +.+|...++....... ... -.+..+.|.+.+ .+++-...++|.|+.--..+..
T Consensus 36 ~~ls~npngr~v~V-~g~geY~iyt~~~~r~----k~~------G~g~~~vw~~~n--~yAv~~~~~~I~I~kn~~~~~~ 102 (443)
T PF04053_consen 36 QSLSHNPNGRFVLV-CGDGEYEIYTALAWRN----KAF------GSGLSFVWSSRN--RYAVLESSSTIKIYKNFKNEVV 102 (443)
T ss_dssp SEEEE-TTSSEEEE-EETTEEEEEETTTTEE----EEE------EE-SEEEE-TSS--EEEEE-TTS-EEEEETTEE-TT
T ss_pred eeEEECCCCCEEEE-EcCCEEEEEEccCCcc----ccc------CceeEEEEecCc--cEEEEECCCeEEEEEcCccccc
Confidence 45555 7777777 5688888887322211 111 124445556644 4777777888999732233333
Q ss_pred EEeecCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 013184 273 KHFSFPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNL 352 (448)
Q Consensus 273 ~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~ 352 (448)
..+..+..+..+-. |.+|++.+.+ .|.+||..+++.++.+... +|..+.|+++|.+++..+.+ ++.|++...
T Consensus 103 k~i~~~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~- 174 (443)
T PF04053_consen 103 KSIKLPFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYNL- 174 (443)
T ss_dssp -----SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-H-
T ss_pred eEEcCCcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecc-
Confidence 34444444555543 8877777665 8999999999999998733 48999999999999999866 588877642
Q ss_pred Cc------------ceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeE
Q 013184 353 SK------------SVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEAL 420 (448)
Q Consensus 353 ~~------------~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L 420 (448)
. .+..+..-...|.+.+|..+ .++-.+.. .|+- +..|.. ..+.....++.=+.+.|....|
T Consensus 175 -~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~-~~i~~ld~~~yllgy~~~~~~l 247 (443)
T PF04053_consen 175 -EAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGET-GIIAHLDKPLYLLGYLPKENRL 247 (443)
T ss_dssp -HHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEE-EEEEE-SS--EEEEEETTTTEE
T ss_pred -hhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCc-ceEEEcCCceEEEEEEccCCEE
Confidence 2 34444433567888888755 33333333 4544 333321 1122122334444455544455
Q ss_pred EEEEec
Q 013184 421 FIGVWD 426 (448)
Q Consensus 421 ~~~~~D 426 (448)
+..--|
T Consensus 248 y~~Dr~ 253 (443)
T PF04053_consen 248 YLIDRD 253 (443)
T ss_dssp EEE-TT
T ss_pred EEEECC
Confidence 544444
No 352
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.64 E-value=9.5e-05 Score=74.87 Aligned_cols=110 Identities=15% Similarity=0.296 Sum_probs=86.4
Q ss_pred eeEEEECCCCCEEEEEe----cCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcce
Q 013184 281 VNHTSLSPDGKLLVIVG----DNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSV 356 (448)
Q Consensus 281 v~~~~~sp~~~~l~~~~----~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~ 356 (448)
-+-.+|+|...++++++ ..|.|.|| ..+|++-.... -.-.+.+++|+|..-.|+.|-.-|.+.+|.... .+.-
T Consensus 18 sti~SWHPsePlfAVA~fS~er~GSVtIf-adtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~-~e~h 94 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVASFSPERGGSVTIF-ADTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNT-TETH 94 (1416)
T ss_pred ccccccCCCCceeEEEEecCCCCceEEEE-ecCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCC-ceee
Confidence 34567999889998886 45678887 36666543332 122345799999998999999999999999865 4555
Q ss_pred EEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 013184 357 AVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAK 393 (448)
Q Consensus 357 ~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~ 393 (448)
.....|..+|..+.|||+|..|+++..-|.|++|...
T Consensus 95 tv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 95 TVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 5566799999999999999999999999999999765
No 353
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.61 E-value=0.039 Score=54.49 Aligned_cols=189 Identities=13% Similarity=0.057 Sum_probs=95.5
Q ss_pred eEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee---c-----CCCeeE
Q 013184 212 ELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS---F-----PWPVNH 283 (448)
Q Consensus 212 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~---~-----~~~v~~ 283 (448)
.|.+|+...... ..+.... +. .+.+.|..+. .|++-..||.++++|+.... ...+. . ...+.+
T Consensus 62 ~I~iys~sG~ll---~~i~w~~-~~--iv~~~wt~~e--~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~ 132 (410)
T PF04841_consen 62 SIQIYSSSGKLL---SSIPWDS-GR--IVGMGWTDDE--ELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFA 132 (410)
T ss_pred EEEEECCCCCEe---EEEEECC-CC--EEEEEECCCC--eEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccc
Confidence 477777554322 2233333 33 3444446644 56677789999999987433 11111 1 111222
Q ss_pred EEECCCCCEEEEEecCCcEEEEECCCCc-eeEeeecCCCcEE----------EEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 013184 284 TSLSPDGKLLVIVGDNPEGILVDSQTGK-AIMPLCGHLDFSF----------ASAWHPDGRIFATGNQDKTCRVWDVRNL 352 (448)
Q Consensus 284 ~~~sp~~~~l~~~~~d~~i~i~d~~~~~-~~~~l~~h~~~v~----------~~~~~p~g~~l~s~~~d~~i~iwd~~~~ 352 (448)
..+..+| +++...++.+.+..-.... ....+..-..... ...++.+....+....++.+.+.+-..
T Consensus 133 ~~~~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~- 209 (410)
T PF04841_consen 133 IWFYKNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENS- 209 (410)
T ss_pred cccCCCC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccc-
Confidence 2333345 3333445555554332221 1111110000000 022333444444444455555443321
Q ss_pred CcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeec-CcCceEEEEEccC
Q 013184 353 SKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEID-FFGEISGMTFSPD 416 (448)
Q Consensus 353 ~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~-~~~~v~~~~fspd 416 (448)
... +. ..+++..++.||+|++||.-..+|.+.|....-.+....+.. -...+..|.|.-+
T Consensus 210 ~~~---i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~ 270 (410)
T PF04841_consen 210 FKQ---ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGN 270 (410)
T ss_pred ccc---cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECC
Confidence 111 22 246899999999999999999999999988654444333322 2356677777654
No 354
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.60 E-value=0.079 Score=52.53 Aligned_cols=196 Identities=14% Similarity=0.064 Sum_probs=112.4
Q ss_pred EEeCCCCCeeEEEEeCCCc----EEEEecCCceEEEEe-ecCCCeeEEEECCCCCEEEEEecCC-----------cEEEE
Q 013184 242 IYNSPSGGIHFMASNNDCG----VRDFDMERFQLSKHF-SFPWPVNHTSLSPDGKLLVIVGDNP-----------EGILV 305 (448)
Q Consensus 242 ~~~~~~~~~~l~s~s~dg~----v~iwd~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~-----------~i~i~ 305 (448)
+..+|+|..++++-+..|. |+++|+++++.+... .... ...+.|.++++.|+....+. .|+.|
T Consensus 129 ~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~-~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~ 207 (414)
T PF02897_consen 129 FSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK-FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRH 207 (414)
T ss_dssp EEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE-SEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEE
T ss_pred eeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc-cceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEE
Confidence 3448999866666555554 999999999876532 3222 22499999988877665332 37788
Q ss_pred ECCCCcee--EeeecCC-Cc-EEEEEEcCCCCEEEEEeCC----CcEEEEEccCC---CcceEEEccCCCCeEEEEEcCC
Q 013184 306 DSQTGKAI--MPLCGHL-DF-SFASAWHPDGRIFATGNQD----KTCRVWDVRNL---SKSVAVLKGNLGAIRSIRFTSD 374 (448)
Q Consensus 306 d~~~~~~~--~~l~~h~-~~-v~~~~~~p~g~~l~s~~~d----~~i~iwd~~~~---~~~~~~~~~~~~~v~~l~~sp~ 374 (448)
.+.++..- ..+.... .. ...+..++++++|+..... ..+.+.++... ......+......+....-+..
T Consensus 208 ~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~ 287 (414)
T PF02897_consen 208 KLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHG 287 (414)
T ss_dssp ETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEET
T ss_pred ECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEccC
Confidence 88776432 3344322 22 6688899999987754332 34677777652 2344444444444433332334
Q ss_pred CCEEEEEe---CCCeEEEEECCCCce---eeeeecCcCceEEEEEccCCCeEEEEEecCCcceEEEEecc
Q 013184 375 GNFMAMAE---PADFVHVYDAKNGFE---KEQEIDFFGEISGMTFSPDTEALFIGVWDRTYGSLLQYNRC 438 (448)
Q Consensus 375 g~~l~s~~---~d~~v~vwd~~~~~~---~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~~~~ll~~~~~ 438 (448)
+.+++... ..+.|...++..... ...+..+...+.=..+...+.+|+....+.....+..+...
T Consensus 288 ~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 288 DRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp TEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT
T ss_pred CEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECC
Confidence 44444432 345777788877653 22455555543333344567788888777776666666555
No 355
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.57 E-value=0.018 Score=52.00 Aligned_cols=173 Identities=14% Similarity=0.169 Sum_probs=115.8
Q ss_pred CCCCCeeEEEEeCCCcEEEEecCCceEEEEeecCCCeeEEEECCC-CCEEEEEecCC-cEEEEECCCCceeEeeecCCCc
Q 013184 245 SPSGGIHFMASNNDCGVRDFDMERFQLSKHFSFPWPVNHTSLSPD-GKLLVIVGDNP-EGILVDSQTGKAIMPLCGHLDF 322 (448)
Q Consensus 245 ~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~-~i~i~d~~~~~~~~~l~~h~~~ 322 (448)
.++|...+++.+++| +++.....+.....++++|. ...++.+-.-| ...++|....+.+.++...++.
T Consensus 44 ~~dgs~g~a~~~eaG----------k~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~R 113 (366)
T COG3490 44 ARDGSFGAATLSEAG----------KIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGR 113 (366)
T ss_pred ccCCceeEEEEccCC----------ceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCc
Confidence 455655555555544 45555555555667888884 44455555544 4567898888776665543322
Q ss_pred EE--EEEEcCCCCEEEEEeCC-----CcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCC-----------
Q 013184 323 SF--ASAWHPDGRIFATGNQD-----KTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPA----------- 384 (448)
Q Consensus 323 v~--~~~~~p~g~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d----------- 384 (448)
-+ .=.|||||++|+..-.| |.|-|||.+..-+.+..+..|.-....+.|.+||+.|+.+...
T Consensus 114 HfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~ 193 (366)
T COG3490 114 HFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTE 193 (366)
T ss_pred eeecccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccc
Confidence 11 23699999998876443 6799999997667778888888778899999999999987431
Q ss_pred -------CeEEEEECCCCceeeee--e--cCcCceEEEEEccCCCeEEEEEecC
Q 013184 385 -------DFVHVYDAKNGFEKEQE--I--DFFGEISGMTFSPDTEALFIGVWDR 427 (448)
Q Consensus 385 -------~~v~vwd~~~~~~~~~~--~--~~~~~v~~~~fspdg~~L~~~~~D~ 427 (448)
-++.+.|..+|..+.+. . .+.-.|..++..+||..++.+=+.|
T Consensus 194 lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G 247 (366)
T COG3490 194 LNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRG 247 (366)
T ss_pred cchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeC
Confidence 13555666666655332 2 2445788999999998887764433
No 356
>PHA02713 hypothetical protein; Provisional
Probab=97.57 E-value=0.0038 Score=64.15 Aligned_cols=196 Identities=10% Similarity=0.061 Sum_probs=103.0
Q ss_pred EEecCCEEEEEeCC------CeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCC-----cEEEEe
Q 013184 197 LAVRDNLLIAGGFQ------GELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDC-----GVRDFD 265 (448)
Q Consensus 197 l~~~~~~lvsg~~d------g~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg-----~v~iwd 265 (448)
...++.+++.||.+ ..+.+|+..+........+...... ..++. -+ +.+.+.|+.++ .+..||
T Consensus 300 a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~-~~~~~----~~-g~IYviGG~~~~~~~~sve~Yd 373 (557)
T PHA02713 300 AIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCR-FSLAV----ID-DTIYAIGGQNGTNVERTIECYT 373 (557)
T ss_pred EEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhc-eeEEE----EC-CEEEEECCcCCCCCCceEEEEE
Confidence 33488889999864 2466777766543221111111111 11221 23 34667777653 478899
Q ss_pred cCCceEEEEeecCCCe---eEEEECCCCCEEEEEecC-----------------------CcEEEEECCCCcee--Eeee
Q 013184 266 MERFQLSKHFSFPWPV---NHTSLSPDGKLLVIVGDN-----------------------PEGILVDSQTGKAI--MPLC 317 (448)
Q Consensus 266 ~~~~~~~~~~~~~~~v---~~~~~sp~~~~l~~~~~d-----------------------~~i~i~d~~~~~~~--~~l~ 317 (448)
..+.+....-..+.+. ..+++ +|++.++||.+ ..+..||+.+.+-. ..+.
T Consensus 374 p~~~~W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~ 451 (557)
T PHA02713 374 MGDDKWKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFW 451 (557)
T ss_pred CCCCeEEECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCC
Confidence 8877654322212111 12222 57777777754 24777888776532 2221
Q ss_pred cCCCcEEEEEEcCCCCEEEEEeCC------CcEEEEEccC--CCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCC--eE
Q 013184 318 GHLDFSFASAWHPDGRIFATGNQD------KTCRVWDVRN--LSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPAD--FV 387 (448)
Q Consensus 318 ~h~~~v~~~~~~p~g~~l~s~~~d------~~i~iwd~~~--~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~--~v 387 (448)
...... +++ .-+|++.+.|+.+ ..+..||..+ ....+..+.........+.+ +|+..++|+.++ .+
T Consensus 452 ~~r~~~-~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~ 527 (557)
T PHA02713 452 TGTIRP-GVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQ 527 (557)
T ss_pred cccccC-cEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeeh
Confidence 111111 122 2256777777654 2467888864 12333344333333333333 678888998887 77
Q ss_pred EEEECCCCceeeeeecC
Q 013184 388 HVYDAKNGFEKEQEIDF 404 (448)
Q Consensus 388 ~vwd~~~~~~~~~~~~~ 404 (448)
-.||..+.+-......|
T Consensus 528 e~yd~~~~~W~~~~~~~ 544 (557)
T PHA02713 528 DTFNVYTYEWNHICHQH 544 (557)
T ss_pred hhcCcccccccchhhhc
Confidence 88888776544333334
No 357
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.56 E-value=0.00026 Score=42.84 Aligned_cols=39 Identities=33% Similarity=0.659 Sum_probs=34.5
Q ss_pred CceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 013184 310 GKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWD 348 (448)
Q Consensus 310 ~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd 348 (448)
++++..+..|...+.++.|+|.+..+++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345667778999999999999999999999999999996
No 358
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.50 E-value=0.02 Score=56.78 Aligned_cols=155 Identities=18% Similarity=0.174 Sum_probs=90.6
Q ss_pred eEEEECCCCCEEEEE-ecCC----cEEEEECCCCceeEee-ecCCCcEEEEEEcCCCCEEEEEeCCC-----------cE
Q 013184 282 NHTSLSPDGKLLVIV-GDNP----EGILVDSQTGKAIMPL-CGHLDFSFASAWHPDGRIFATGNQDK-----------TC 344 (448)
Q Consensus 282 ~~~~~sp~~~~l~~~-~~d~----~i~i~d~~~~~~~~~l-~~h~~~v~~~~~~p~g~~l~s~~~d~-----------~i 344 (448)
...++||+|+++|.+ +..| .++++|+.+|+.+... .. ... ..+.|.++++.|+....+. .|
T Consensus 127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~~-~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PKF-SSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EES-EEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-ccc-ceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 366789999998876 3333 5999999999876532 22 111 2399999988776665332 37
Q ss_pred EEEEccCCCcc-eEEEccCCCC--eEEEEEcCCCCEEEEEeCC----CeEEEEECCCC----ceeeeeecCcCceEEEEE
Q 013184 345 RVWDVRNLSKS-VAVLKGNLGA--IRSIRFTSDGNFMAMAEPA----DFVHVYDAKNG----FEKEQEIDFFGEISGMTF 413 (448)
Q Consensus 345 ~iwd~~~~~~~-~~~~~~~~~~--v~~l~~sp~g~~l~s~~~d----~~v~vwd~~~~----~~~~~~~~~~~~v~~~~f 413 (448)
+.|.+.+.... ...+...... ...+..+++|++|+..+.. ..|++.++..+ .....+......+....-
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~ 284 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD 284 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence 77877653222 2344443333 5678899999998865432 35888898875 233333333333333333
Q ss_pred ccCCCeEEEEEecCCcceEEEEecc
Q 013184 414 SPDTEALFIGVWDRTYGSLLQYNRC 438 (448)
Q Consensus 414 spdg~~L~~~~~D~~~~~ll~~~~~ 438 (448)
+..+.+++....+...+.|+.....
T Consensus 285 ~~~~~~yi~Tn~~a~~~~l~~~~l~ 309 (414)
T PF02897_consen 285 HHGDRLYILTNDDAPNGRLVAVDLA 309 (414)
T ss_dssp EETTEEEEEE-TT-TT-EEEEEETT
T ss_pred ccCCEEEEeeCCCCCCcEEEEeccc
Confidence 3344555555566666777776544
No 359
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.50 E-value=0.12 Score=50.98 Aligned_cols=188 Identities=11% Similarity=0.079 Sum_probs=94.0
Q ss_pred eeEEEEe-cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEE--EEeCCCCCeeEEEEeCCCcEEEEecCCc
Q 013184 193 QVSTLAV-RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVE--IYNSPSGGIHFMASNNDCGVRDFDMERF 269 (448)
Q Consensus 193 ~i~~l~~-~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~l~s~s~dg~v~iwd~~~~ 269 (448)
.|.+|.+ +...|++-..||.++++++.... .+..........+..+.- ..+..+| ++.-..++.+.+..--..
T Consensus 82 ~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~G---ivvLt~~~~~~~v~n~~~ 157 (410)
T PF04841_consen 82 RIVGMGWTDDEELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKNG---IVVLTGNNRFYVVNNIDE 157 (410)
T ss_pred CEEEEEECCCCeEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCCC---EEEECCCCeEEEEeCccc
Confidence 5889999 66788888999999999985333 111111111122222210 1111233 222223344443322111
Q ss_pred e-EEEEe-ecCCCeeE----------EEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEE
Q 013184 270 Q-LSKHF-SFPWPVNH----------TSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFAT 337 (448)
Q Consensus 270 ~-~~~~~-~~~~~v~~----------~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s 337 (448)
. ..+.+ ..+..... ..++.+....+....++.+.+.+....+. +. ..+++..++.||+|+++|.
T Consensus 158 ~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSpng~~iAl 233 (410)
T PF04841_consen 158 PVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSPNGKFIAL 233 (410)
T ss_pred cchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECCCCCEEEE
Confidence 1 11111 11111110 12333334444444444455333222111 21 2357899999999999999
Q ss_pred EeCCCcEEEEEccCCCcceEEEccC-CCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 013184 338 GNQDKTCRVWDVRNLSKSVAVLKGN-LGAIRSIRFTSDGNFMAMAEPADFVHVYD 391 (448)
Q Consensus 338 ~~~d~~i~iwd~~~~~~~~~~~~~~-~~~v~~l~~sp~g~~l~s~~~d~~v~vwd 391 (448)
-..+|.+.+....- .+....+... ......+.|.-+...++.- ...|.++.
T Consensus 234 ~t~~g~l~v~ssDf-~~~~~e~~~~~~~~p~~~~WCG~dav~l~~--~~~l~lvg 285 (410)
T PF04841_consen 234 FTDSGNLWVVSSDF-SEKLCEFDTDSKSPPKQMAWCGNDAVVLSW--EDELLLVG 285 (410)
T ss_pred EECCCCEEEEECcc-cceeEEeecCcCCCCcEEEEECCCcEEEEe--CCEEEEEC
Confidence 99999999888643 4455444433 3456678887654333332 33455555
No 360
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.50 E-value=0.018 Score=44.60 Aligned_cols=102 Identities=11% Similarity=0.112 Sum_probs=71.7
Q ss_pred eeEEEEe-CCCCCeeEEEEeCCCcEEEEecCCceEEEEeecCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEee
Q 013184 238 NAVEIYN-SPSGGIHFMASNNDCGVRDFDMERFQLSKHFSFPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPL 316 (448)
Q Consensus 238 ~~v~~~~-~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l 316 (448)
.++++.. ..+|...|++|+.|..||+|+-+ +++..+.-...|.+++-... ..++.+..+|+|-+|+.. +.+...
T Consensus 3 ~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlWRi 77 (111)
T PF14783_consen 3 TALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLWRI 77 (111)
T ss_pred eEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceeeee
Confidence 3444443 44566789999999999999854 67777777788888887765 678999999999999752 334444
Q ss_pred ecCCCcEEEEEEc-CCC---CEEEEEeCCCcEE
Q 013184 317 CGHLDFSFASAWH-PDG---RIFATGNQDKTCR 345 (448)
Q Consensus 317 ~~h~~~v~~~~~~-p~g---~~l~s~~~d~~i~ 345 (448)
+.... +.++++. .++ .-|++|-.+|.|-
T Consensus 78 KSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 78 KSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ccCCC-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 43333 5555443 333 3688888888764
No 361
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.00064 Score=67.13 Aligned_cols=93 Identities=13% Similarity=0.131 Sum_probs=76.1
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeE-EEEEcCCCCEEEEEeCCCeEEEEECCCCceee
Q 013184 321 DFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIR-SIRFTSDGNFMAMAEPADFVHVYDAKNGFEKE 399 (448)
Q Consensus 321 ~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~-~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~ 399 (448)
..+..+.|+|.-.+||++..+|.|-+.-+. .+.+.++.-+...++ +++|.|||+.||+|-.||+|++.|+.++..+.
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n--~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN--WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec--cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 456788999999999999999999888875 566777776666666 99999999999999999999999999998776
Q ss_pred eee-cCcCceEEEEEcc
Q 013184 400 QEI-DFFGEISGMTFSP 415 (448)
Q Consensus 400 ~~~-~~~~~v~~~~fsp 415 (448)
... .....|+.+-|+|
T Consensus 99 ~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWDR 115 (665)
T ss_pred ccccccccchheeeccc
Confidence 632 2345677777864
No 362
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.47 E-value=0.11 Score=49.76 Aligned_cols=265 Identities=13% Similarity=0.096 Sum_probs=125.1
Q ss_pred eeeCCCCeEEEec----CCeEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEecCCEEEEEeCCCeEE
Q 013184 139 VWSTSKHDVYLMS----HFSIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAVRDNLLIAGGFQGELI 214 (448)
Q Consensus 139 ~~~~~~~~v~~~~----~~~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~~~~~lvsg~~dg~i~ 214 (448)
-|...+..++|++ ...+.+.|+.+++..++....|.... -..++.+++.++-......|+
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~----------------g~~~s~~~~~~~Yv~~~~~l~ 105 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTF----------------GGFLSPDDRALYYVKNGRSLR 105 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TT----------------T-EE-TTSSEEEEEETTTEEE
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCcc----------------ceEEecCCCeEEEEECCCeEE
Confidence 3455566666654 34588889888888887765532111 134455666665544556777
Q ss_pred EEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEe----------------------CCCcEEEEecCCceEE
Q 013184 215 CKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASN----------------------NDCGVRDFDMERFQLS 272 (448)
Q Consensus 215 vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s----------------------~dg~v~iwd~~~~~~~ 272 (448)
--++.+.+...... -.........+..+.++. .++..- -.+.|...|+.+|+..
T Consensus 106 ~vdL~T~e~~~vy~---~p~~~~g~gt~v~n~d~t-~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~ 181 (386)
T PF14583_consen 106 RVDLDTLEERVVYE---VPDDWKGYGTWVANSDCT-KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERK 181 (386)
T ss_dssp EEETTT--EEEEEE-----TTEEEEEEEEE-TTSS-EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EE
T ss_pred EEECCcCcEEEEEE---CCcccccccceeeCCCcc-EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCcee
Confidence 77777765432222 223333333333344444 222211 1244666788899988
Q ss_pred EEeecCCCeeEEEECC-CCCEEEEEecC---C-cEEEEECC-CCceeEeeecCC--CcEEEEEEcCCCCEEEEEeC----
Q 013184 273 KHFSFPWPVNHTSLSP-DGKLLVIVGDN---P-EGILVDSQ-TGKAIMPLCGHL--DFSFASAWHPDGRIFATGNQ---- 340 (448)
Q Consensus 273 ~~~~~~~~v~~~~~sp-~~~~l~~~~~d---~-~i~i~d~~-~~~~~~~l~~h~--~~v~~~~~~p~g~~l~s~~~---- 340 (448)
..+.....+..+.||| +..+|+.|... . .-+||-++ .|.....+..+. ..+..=-|.|||..|.--+.
T Consensus 182 ~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~ 261 (386)
T PF14583_consen 182 VVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGG 261 (386)
T ss_dssp EEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT
T ss_pred EEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCC
Confidence 8888888899999999 55566665431 1 12455433 233334443333 22344479999986654332
Q ss_pred -CCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCC----------------eEEEEECCCCceeeeeec
Q 013184 341 -DKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPAD----------------FVHVYDAKNGFEKEQEID 403 (448)
Q Consensus 341 -d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~----------------~v~vwd~~~~~~~~~~~~ 403 (448)
+..|.-+|+.+. .... + ....+...+--++||++++-=+.|. .|+++++..+... .+..
T Consensus 262 ~~~~i~~~d~~t~-~~~~-~-~~~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~-~l~~ 337 (386)
T PF14583_consen 262 QDFWIAGYDPDTG-ERRR-L-MEMPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFR-KLAR 337 (386)
T ss_dssp --EEEEEE-TTT---EEE-E-EEE-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEE-EEEE
T ss_pred CceEEEeeCCCCC-CceE-E-EeCCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCcee-eeee
Confidence 335666677652 2221 2 1222344566678998876433331 5677888776543 2222
Q ss_pred CcC-----------ceEEEEEccCCCeEEEEEecC
Q 013184 404 FFG-----------EISGMTFSPDTEALFIGVWDR 427 (448)
Q Consensus 404 ~~~-----------~v~~~~fspdg~~L~~~~~D~ 427 (448)
|.. .=..+.|+|||++++-.+.-.
T Consensus 338 h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~ 372 (386)
T PF14583_consen 338 HDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDME 372 (386)
T ss_dssp -------BTTBSSTT----EE-TTSSEEEEEE-TT
T ss_pred ccCcceeecCCCccCCCCCccCCCCCEEEEECCCC
Confidence 211 124689999999988776543
No 363
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.00044 Score=64.58 Aligned_cols=94 Identities=18% Similarity=0.154 Sum_probs=76.6
Q ss_pred EEEEECCCCceeEeeecCCCcEEEEEEcCCCC-EEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCC-CEEE
Q 013184 302 GILVDSQTGKAIMPLCGHLDFSFASAWHPDGR-IFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDG-NFMA 379 (448)
Q Consensus 302 i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g-~~l~ 379 (448)
++..+..+.+...-+.+|...|..++|+|..+ ++..++.+..|+|.|+++ ...+..+..+ ..+.+++|.-+. .+|.
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet-~~~vssy~a~-~~~wSC~wDlde~h~IY 252 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLET-SCVVSSYIAY-NQIWSCCWDLDERHVIY 252 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEeccc-ceeeeheecc-CCceeeeeccCCcceeE
Confidence 55666555555666777888999999999776 788899999999999987 6777777777 789999998865 5778
Q ss_pred EEeCCCeEEEEECCCCce
Q 013184 380 MAEPADFVHVYDAKNGFE 397 (448)
Q Consensus 380 s~~~d~~v~vwd~~~~~~ 397 (448)
+|-..|.|.|||++....
T Consensus 253 aGl~nG~VlvyD~R~~~~ 270 (463)
T KOG1645|consen 253 AGLQNGMVLVYDMRQPEG 270 (463)
T ss_pred EeccCceEEEEEccCCCc
Confidence 888899999999987653
No 364
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.39 E-value=0.00069 Score=67.71 Aligned_cols=111 Identities=10% Similarity=0.096 Sum_probs=81.8
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCcee
Q 013184 319 HLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEK 398 (448)
Q Consensus 319 h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~ 398 (448)
+...|.--+++..+.+++.|+.-|.+.+|+-...........+..+.+..+..|++..++|+|+..|.|.|+-++.+...
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 33444445667789999999999999999875422223333335566777888999999999999999999998775433
Q ss_pred eee------ecCcCceEEEEEccCCCeEEEEEecCCc
Q 013184 399 EQE------IDFFGEISGMTFSPDTEALFIGVWDRTY 429 (448)
Q Consensus 399 ~~~------~~~~~~v~~~~fspdg~~L~~~~~D~~~ 429 (448)
.+. ..|...|++++|++++..|++|-.-|++
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv 148 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKV 148 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeecCCCceE
Confidence 221 1266789999999999999999665543
No 365
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.39 E-value=0.0088 Score=61.53 Aligned_cols=141 Identities=17% Similarity=0.146 Sum_probs=83.0
Q ss_pred CCeeEEEECCCCCEEEEEe------cCC--cEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCC-CcEEEEEc
Q 013184 279 WPVNHTSLSPDGKLLVIVG------DNP--EGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQD-KTCRVWDV 349 (448)
Q Consensus 279 ~~v~~~~~sp~~~~l~~~~------~d~--~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d-~~i~iwd~ 349 (448)
..+...+++|+|+.++..- .+. .+.+++. .+.......+. ....-.|+|+|..|++.... ..+++.+-
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEecc
Confidence 3578899999999888765 233 4555564 23332223332 36778999999888877533 12222221
Q ss_pred cCCCcceEEEc--------cCCCCeEEEEEcCCCCEEEEEeCCCeEEE---EECCCCceee----eee-cCcCceEEEEE
Q 013184 350 RNLSKSVAVLK--------GNLGAIRSIRFTSDGNFMAMAEPADFVHV---YDAKNGFEKE----QEI-DFFGEISGMTF 413 (448)
Q Consensus 350 ~~~~~~~~~~~--------~~~~~v~~l~~sp~g~~l~s~~~d~~v~v---wd~~~~~~~~----~~~-~~~~~v~~~~f 413 (448)
.. ...+..+. ...+.|..++|||||..||... ++.|+| -....|.... .+. .....+.++.|
T Consensus 427 ~~-~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W 504 (591)
T PRK13616 427 PA-TGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDW 504 (591)
T ss_pred CC-CceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceE
Confidence 11 11111110 2245799999999999888866 467777 4544554111 111 22334688999
Q ss_pred ccCCCeEEEEEe
Q 013184 414 SPDTEALFIGVW 425 (448)
Q Consensus 414 spdg~~L~~~~~ 425 (448)
.+++.. +++..
T Consensus 505 ~~~~~L-~V~~~ 515 (591)
T PRK13616 505 RTGDSL-VVGRS 515 (591)
T ss_pred ecCCEE-EEEec
Confidence 999884 45543
No 366
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.39 E-value=0.1 Score=47.38 Aligned_cols=189 Identities=16% Similarity=0.191 Sum_probs=114.8
Q ss_pred EEeecCCCCceeeEEEEeCCCCCeeEEEEeCCC--cEEEEecCCceEEEEeecCCCee--EEEECCCCCEEEEEecCCcE
Q 013184 227 SRTTYDENAITNAVEIYNSPSGGIHFMASNNDC--GVRDFDMERFQLSKHFSFPWPVN--HTSLSPDGKLLVIVGDNPEG 302 (448)
Q Consensus 227 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg--~v~iwd~~~~~~~~~~~~~~~v~--~~~~sp~~~~l~~~~~d~~i 302 (448)
....++....+..+.+ ..+| .++-+.+.-| .|+.+|+.+++.......+.... .++.. ++++....=.++.+
T Consensus 37 ~~ypHd~~aFTQGL~~--~~~g-~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~ 112 (264)
T PF05096_consen 37 ETYPHDPTAFTQGLEF--LDDG-TLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTG 112 (264)
T ss_dssp EEEE--TT-EEEEEEE--EETT-EEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEE
T ss_pred EECCCCCcccCccEEe--cCCC-EEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeE
Confidence 3445566677777766 2344 4666766655 79999999999887777444332 33333 23344444578899
Q ss_pred EEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccC-----CCCeEEEEEcCCCCE
Q 013184 303 ILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGN-----LGAIRSIRFTSDGNF 377 (448)
Q Consensus 303 ~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-----~~~v~~l~~sp~g~~ 377 (448)
.+||..+-+.+.++.- ...-..++ .+|..|+.+.....++++|..+ -+....+.-. ...++-+-|- +|..
T Consensus 113 f~yd~~tl~~~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~-f~~~~~i~V~~~g~pv~~LNELE~i-~G~I 187 (264)
T PF05096_consen 113 FVYDPNTLKKIGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPET-FKEVRTIQVTDNGRPVSNLNELEYI-NGKI 187 (264)
T ss_dssp EEEETTTTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT--SEEEEEE-EETTEE---EEEEEEE-TTEE
T ss_pred EEEccccceEEEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcc-cceEEEEEEEECCEECCCcEeEEEE-cCEE
Confidence 9999999998888763 34556676 3566677776677899999865 3444443322 2246667775 5655
Q ss_pred EEEEeCCCeEEEEECCCCceeeeeec------------C---cCceEEEEEccCCCeEEEEE
Q 013184 378 MAMAEPADFVHVYDAKNGFEKEQEID------------F---FGEISGMTFSPDTEALFIGV 424 (448)
Q Consensus 378 l~s~~~d~~v~vwd~~~~~~~~~~~~------------~---~~~v~~~~fspdg~~L~~~~ 424 (448)
.|=-=....|...|..+|.....+.- . ..-.++|||.|.++.|++.+
T Consensus 188 yANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 188 YANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 55444566788889999887654320 1 23589999999888777765
No 367
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.37 E-value=0.0026 Score=61.71 Aligned_cols=133 Identities=17% Similarity=0.172 Sum_probs=93.4
Q ss_pred CCCEEE-EEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCC--E-----EEEEeCCCcEEEEEccCCCc-ceEEE
Q 013184 289 DGKLLV-IVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGR--I-----FATGNQDKTCRVWDVRNLSK-SVAVL 359 (448)
Q Consensus 289 ~~~~l~-~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~--~-----l~s~~~d~~i~iwd~~~~~~-~~~~~ 359 (448)
+.++|+ .+.....++-.|+..|+.+..++-+.+ |.-+.+.|+.+ . -+.|-.+..|.-||.|-.+. .+..-
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 344444 344556788899999999999987776 66777888653 1 23455577788899985444 33333
Q ss_pred ccCC----CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCcee-eeeecCcCceEEEEEccCCCeEEEEE
Q 013184 360 KGNL----GAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEK-EQEIDFFGEISGMTFSPDTEALFIGV 424 (448)
Q Consensus 360 ~~~~----~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~-~~~~~~~~~v~~~~fspdg~~L~~~~ 424 (448)
++|. ....|.+-..+| +||+|+.+|.|++||- .+... ..+++...+|..|..+.+|++|++.+
T Consensus 423 q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc 490 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC 490 (644)
T ss_pred eccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec
Confidence 3332 234555555554 8999999999999996 55444 44667888999999999999988664
No 368
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.36 E-value=0.00059 Score=41.14 Aligned_cols=38 Identities=29% Similarity=0.635 Sum_probs=33.8
Q ss_pred cceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 013184 354 KSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYD 391 (448)
Q Consensus 354 ~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd 391 (448)
.++..+..|...|.++.|+|.+.++++++.++.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45666778888999999999999999999999999996
No 369
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.32 E-value=0.03 Score=54.68 Aligned_cols=193 Identities=13% Similarity=0.160 Sum_probs=107.8
Q ss_pred ceeeEEEEe-cCCEEEEEeCCCeEEEEEcCCCCceeEEEeec-----CCCCceeeEEEEeCC--CC---CeeEEEEeCCC
Q 013184 191 QTQVSTLAV-RDNLLIAGGFQGELICKYLDQPGVSFCSRTTY-----DENAITNAVEIYNSP--SG---GIHFMASNNDC 259 (448)
Q Consensus 191 ~~~i~~l~~-~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~--~~---~~~l~s~s~dg 259 (448)
+.+|++++. +=.+++.|..+|.+.|.|++.+.+.+...+.. .....+.++.|.-.. ++ ...+++|.+.|
T Consensus 86 ~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G 165 (395)
T PF08596_consen 86 QGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSG 165 (395)
T ss_dssp S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTS
T ss_pred CCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCC
Confidence 557999998 77899999999999999998877665544433 123334455553211 11 25788999999
Q ss_pred cEEEEecC--C-ce----EEEEe-ecCCCeeEEE-ECCC-C-------------------CEEEEEecCCcEEEEECCCC
Q 013184 260 GVRDFDME--R-FQ----LSKHF-SFPWPVNHTS-LSPD-G-------------------KLLVIVGDNPEGILVDSQTG 310 (448)
Q Consensus 260 ~v~iwd~~--~-~~----~~~~~-~~~~~v~~~~-~sp~-~-------------------~~l~~~~~d~~i~i~d~~~~ 310 (448)
.+.+|.+. . +. ..... .+..+|..+. ++.+ | .-+++......++++...+.
T Consensus 166 ~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~ 245 (395)
T PF08596_consen 166 NVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKS 245 (395)
T ss_dssp EEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT--
T ss_pred CEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCC
Confidence 99999764 1 22 22222 2455555544 3211 1 23444555668999998888
Q ss_pred ceeEeeecCCCcEEEEEEc-----CCCCEEEEEeCCCcEEEEEccCCCcceEEEccCC----CCeEEEEEcCCCCEEEEE
Q 013184 311 KAIMPLCGHLDFSFASAWH-----PDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNL----GAIRSIRFTSDGNFMAMA 381 (448)
Q Consensus 311 ~~~~~l~~h~~~v~~~~~~-----p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~----~~v~~l~~sp~g~~l~s~ 381 (448)
+..+......-....+.+- ..+..|++-..+|.|+++.+-. -+.+..+.... ..+....++++|..++-.
T Consensus 246 k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~-Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~ 324 (395)
T PF08596_consen 246 KGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPS-LKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWT 324 (395)
T ss_dssp -EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT---EEEEEE-SS---HHHHTT-EE-TTS-EEEE-
T ss_pred cccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCC-chHhhcccCCCccccccccccEECCCCCEEEEe
Confidence 7766554222223334442 3566788889999999999976 34444443321 234566789999988776
Q ss_pred eCC
Q 013184 382 EPA 384 (448)
Q Consensus 382 ~~d 384 (448)
+..
T Consensus 325 gps 327 (395)
T PF08596_consen 325 GPS 327 (395)
T ss_dssp SSS
T ss_pred Ccc
Confidence 554
No 370
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.30 E-value=0.16 Score=47.65 Aligned_cols=152 Identities=13% Similarity=0.153 Sum_probs=79.0
Q ss_pred cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCC---
Q 013184 277 FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLS--- 353 (448)
Q Consensus 277 ~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~--- 353 (448)
..+.+..+.-+++|++++++.......-||.-...-...-..-...|.++.|.|++.+.+.+ +.|.|+.=+.....
T Consensus 143 ~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w 221 (302)
T PF14870_consen 143 TSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETW 221 (302)
T ss_dssp ----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE
T ss_pred CcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcccc
Confidence 45778888899999988888666556677754322222223346789999999998876655 88888877621101
Q ss_pred -cceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeee---cCcCceEEEEEccCCCeEEEEEecCCc
Q 013184 354 -KSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEI---DFFGEISGMTFSPDTEALFIGVWDRTY 429 (448)
Q Consensus 354 -~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~---~~~~~v~~~~fspdg~~L~~~~~D~~~ 429 (448)
+.+..+....-.+..++|.+++...|+|+.. .+ +.....|+.-.... ...+.+..|.|.+..+-++. +.+
T Consensus 222 ~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G-~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~l-G~~--- 295 (302)
T PF14870_consen 222 SEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG-TL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVL-GQD--- 295 (302)
T ss_dssp ---B-TTSS--S-EEEEEESSSS-EEEEESTT--E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--ST---
T ss_pred ccccCCcccCceeeEEEEecCCCCEEEEeCCc-cE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEE-CCC---
Confidence 1111111122347899999998887776554 33 44445565443332 23456888999876555555 444
Q ss_pred ceEEEE
Q 013184 430 GSLLQY 435 (448)
Q Consensus 430 ~~ll~~ 435 (448)
|.||+|
T Consensus 296 G~ll~~ 301 (302)
T PF14870_consen 296 GVLLRY 301 (302)
T ss_dssp TEEEEE
T ss_pred cEEEEe
Confidence 556655
No 371
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.27 E-value=0.00058 Score=69.42 Aligned_cols=104 Identities=14% Similarity=0.196 Sum_probs=85.6
Q ss_pred CCCCCeeEEEEe----CCCcEEEEecCCceEEEEeecCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCC
Q 013184 245 SPSGGIHFMASN----NDCGVRDFDMERFQLSKHFSFPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHL 320 (448)
Q Consensus 245 ~~~~~~~l~s~s----~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~ 320 (448)
+|... ++++++ ..|.|.||- ++|++.+....+-.+.+++|+|..-.|+.|-.-|.+.+|...+.+.-.....|.
T Consensus 24 HPseP-lfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~ 101 (1416)
T KOG3617|consen 24 HPSEP-LFAVASFSPERGGSVTIFA-DTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHP 101 (1416)
T ss_pred CCCCc-eeEEEEecCCCCceEEEEe-cCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCC
Confidence 66665 555554 357788874 567777777777778899999998889999999999999988777666666799
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 013184 321 DFSFASAWHPDGRIFATGNQDKTCRVWDVR 350 (448)
Q Consensus 321 ~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~ 350 (448)
.++..+.|||+|..++|+..-|.|.+|...
T Consensus 102 a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 102 APIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred CCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 999999999999999999999999999875
No 372
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.23 E-value=0.039 Score=42.81 Aligned_cols=100 Identities=18% Similarity=0.147 Sum_probs=67.2
Q ss_pred eeEEEECC-CC---CEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcce
Q 013184 281 VNHTSLSP-DG---KLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSV 356 (448)
Q Consensus 281 v~~~~~sp-~~---~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~ 356 (448)
|+++++.. ++ +.|++|++|..|++|+- ...+..+.. .+.|.+++-... ..|+.+-.+|+|-+|+-. ..+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~---~Rl 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRS---QRL 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCc---cee
Confidence 56666655 22 57999999999999964 356666663 466777776655 679999999999999863 333
Q ss_pred EEEccCCCCeEEEEEc-CCC---CEEEEEeCCCeEE
Q 013184 357 AVLKGNLGAIRSIRFT-SDG---NFMAMAEPADFVH 388 (448)
Q Consensus 357 ~~~~~~~~~v~~l~~s-p~g---~~l~s~~~d~~v~ 388 (448)
-..+.... +.++.+. .+| .-|++|=.+|.|-
T Consensus 75 WRiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 75 WRIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 33333333 4555543 333 4788888888764
No 373
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.21 E-value=0.046 Score=50.16 Aligned_cols=145 Identities=19% Similarity=0.283 Sum_probs=89.2
Q ss_pred CeeEEEECCCCCEEEEEe---cCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE-ccCCCcc
Q 013184 280 PVNHTSLSPDGKLLVIVG---DNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWD-VRNLSKS 355 (448)
Q Consensus 280 ~v~~~~~sp~~~~l~~~~---~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd-~~~~~~~ 355 (448)
.+.+.+++++++.++... ....+.++. .+.....+. ....+....|++++...+....+...+++- .......
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~--~~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGP--AGGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEc--CCCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688999999999887766 333455544 333333221 223677789999988777777666677774 2221222
Q ss_pred eEEEccC-C-CCeEEEEEcCCCCEEEEEe---CCCeEEEEECC---CC--cee----eeeecCcCceEEEEEccCCCeEE
Q 013184 356 VAVLKGN-L-GAIRSIRFTSDGNFMAMAE---PADFVHVYDAK---NG--FEK----EQEIDFFGEISGMTFSPDTEALF 421 (448)
Q Consensus 356 ~~~~~~~-~-~~v~~l~~sp~g~~l~s~~---~d~~v~vwd~~---~~--~~~----~~~~~~~~~v~~~~fspdg~~L~ 421 (448)
...+... . +.|..+++||||..+|.-. .++.|.|=-+. .+ ..+ .........+.+++|.+++.+++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V 181 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV 181 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence 2222211 1 2899999999998887765 34677776543 22 111 11112346789999999998777
Q ss_pred EEEecC
Q 013184 422 IGVWDR 427 (448)
Q Consensus 422 ~~~~D~ 427 (448)
.+...+
T Consensus 182 ~~~~~~ 187 (253)
T PF10647_consen 182 LGRSAG 187 (253)
T ss_pred EeCCCC
Confidence 765443
No 374
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.17 E-value=0.26 Score=47.74 Aligned_cols=223 Identities=12% Similarity=0.099 Sum_probs=103.3
Q ss_pred cCCEEEEEe-CCCeEEEEEcCCCC-c-eeEEEeec----CCCCceeeEEEEeCCCCCeeEEEE--eC----CCcEEEEec
Q 013184 200 RDNLLIAGG-FQGELICKYLDQPG-V-SFCSRTTY----DENAITNAVEIYNSPSGGIHFMAS--NN----DCGVRDFDM 266 (448)
Q Consensus 200 ~~~~lvsg~-~dg~i~vw~~~~~~-~-~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~s~--s~----dg~v~iwd~ 266 (448)
..++|++.+ .++.|.|.|+.+.- . .+...+.. ...+....-.+.--|+|. +++++ +. -|.+.++|-
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~-imIS~lGd~~G~g~Ggf~llD~ 164 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGR-IMISALGDADGNGPGGFVLLDG 164 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS---EEEEEEEETTS-S--EEEEE-T
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCcc-EEEEeccCCCCCCCCcEEEEcC
Confidence 456777766 78899999987433 2 22222211 011112222222247776 55554 22 356889999
Q ss_pred CCceEEEEeec----CCCeeEEEECCCCCEEEEEe--------------------cCCcEEEEECCCCceeEeeecCCC-
Q 013184 267 ERFQLSKHFSF----PWPVNHTSLSPDGKLLVIVG--------------------DNPEGILVDSQTGKAIMPLCGHLD- 321 (448)
Q Consensus 267 ~~~~~~~~~~~----~~~v~~~~~sp~~~~l~~~~--------------------~d~~i~i~d~~~~~~~~~l~~h~~- 321 (448)
++.++....+. ...-..+.+.|..+.+++.. ...++.+||..+.+.++++.--..
T Consensus 165 ~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g 244 (461)
T PF05694_consen 165 ETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEG 244 (461)
T ss_dssp TT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTE
T ss_pred ccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCC
Confidence 98888877663 22234566788777777743 235799999999999999875432
Q ss_pred -cEEEEEEcC--CCCEE-EEEeCCCcEEEEEccCCC----cceEEEccC-----------------CCCeEEEEEcCCCC
Q 013184 322 -FSFASAWHP--DGRIF-ATGNQDKTCRVWDVRNLS----KSVAVLKGN-----------------LGAIRSIRFTSDGN 376 (448)
Q Consensus 322 -~v~~~~~~p--~g~~l-~s~~~d~~i~iwd~~~~~----~~~~~~~~~-----------------~~~v~~l~~sp~g~ 376 (448)
....+.|.. +..+= +.+.-.++|-.|--...+ +.+..+... ..-|+.|..|.|.+
T Consensus 245 ~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDr 324 (461)
T PF05694_consen 245 QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDR 324 (461)
T ss_dssp EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-
T ss_pred CceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCC
Confidence 345666654 34433 323333344444321112 112222111 23478999999999
Q ss_pred EEEEEe-CCCeEEEEECCCCceeeee---e-c---------------CcCceEEEEEccCCCeEEEE
Q 013184 377 FMAMAE-PADFVHVYDAKNGFEKEQE---I-D---------------FFGEISGMTFSPDTEALFIG 423 (448)
Q Consensus 377 ~l~s~~-~d~~v~vwd~~~~~~~~~~---~-~---------------~~~~v~~~~fspdg~~L~~~ 423 (448)
+|..++ ..|.|+.||+......+.. . + ..+...=+..|.||+.|++.
T Consensus 325 fLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvT 391 (461)
T PF05694_consen 325 FLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVT 391 (461)
T ss_dssp EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE
T ss_pred EEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEE
Confidence 998887 4789999999875443222 1 0 11234668899999999977
No 375
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.15 E-value=0.21 Score=46.31 Aligned_cols=226 Identities=15% Similarity=0.177 Sum_probs=120.8
Q ss_pred ecCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEE-----
Q 013184 199 VRDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSK----- 273 (448)
Q Consensus 199 ~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~----- 273 (448)
..++.|+.|+.+| |.++++...... ...... .. +..+.+ .+.-+.+++.+ |+.++++++.......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~--~~i~~~-~~-I~ql~v--l~~~~~llvLs--d~~l~~~~L~~l~~~~~~~~~ 75 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKP--TRILKL-SS-ITQLSV--LPELNLLLVLS--DGQLYVYDLDSLEPVSTSAPL 75 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccc--eeEeec-ce-EEEEEE--ecccCEEEEEc--CCccEEEEchhhccccccccc
Confidence 3678899999998 888888332211 111111 11 344444 35544344443 5999999987644333
Q ss_pred ----------EeecCCCeeEEE--ECCCCCEEEEEecCCcEEEEECCCC-----ceeEeeecCCCcEEEEEEcCCCCEEE
Q 013184 274 ----------HFSFPWPVNHTS--LSPDGKLLVIVGDNPEGILVDSQTG-----KAIMPLCGHLDFSFASAWHPDGRIFA 336 (448)
Q Consensus 274 ----------~~~~~~~v~~~~--~sp~~~~l~~~~~d~~i~i~d~~~~-----~~~~~l~~h~~~v~~~~~~p~g~~l~ 336 (448)
.+.....+...+ -.+.+...+++.....|.+|..... +..+.+. -.+.+.+++|. ++.|+
T Consensus 76 ~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~ 152 (275)
T PF00780_consen 76 AFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKIC 152 (275)
T ss_pred cccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEE
Confidence 222333455444 2234444455555558888776542 3445554 34778899998 56677
Q ss_pred EEeCCCcEEEEEccCCCcceEEEcc------------CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceee-eeec
Q 013184 337 TGNQDKTCRVWDVRNLSKSVAVLKG------------NLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKE-QEID 403 (448)
Q Consensus 337 s~~~d~~i~iwd~~~~~~~~~~~~~------------~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~-~~~~ 403 (448)
.|..++ ..+.|+.+ +.....+.. ...++..+... ++.+|++- +..-.+.| ..|.... ....
T Consensus 153 v~~~~~-f~~idl~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~-~~G~~~r~~~i~ 226 (275)
T PF00780_consen 153 VGTSKG-FYLIDLNT-GSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVN-KNGEPSRKSTIQ 226 (275)
T ss_pred EEeCCc-eEEEecCC-CCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEc-CCCCcCcccEEE
Confidence 777654 78888874 332222211 11234444443 46777753 33344445 3454443 3333
Q ss_pred CcCceEEEEEccCCCeEEEEEec------CCcceEEEEecccceEec
Q 013184 404 FFGEISGMTFSPDTEALFIGVWD------RTYGSLLQYNRCRNYTYL 444 (448)
Q Consensus 404 ~~~~v~~~~fspdg~~L~~~~~D------~~~~~ll~~~~~~~~~~l 444 (448)
....+.++++. ..||++...+ -..+.++|.-...+..+|
T Consensus 227 W~~~p~~~~~~--~pyli~~~~~~iEV~~~~~~~lvQ~i~~~~~~~l 271 (275)
T PF00780_consen 227 WSSAPQSVAYS--SPYLIAFSSNSIEVRSLETGELVQTIPLPNIRLL 271 (275)
T ss_pred cCCchhEEEEE--CCEEEEECCCEEEEEECcCCcEEEEEECCCEEEE
Confidence 44566777774 3466655332 223455555444444443
No 376
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.14 E-value=0.19 Score=45.68 Aligned_cols=189 Identities=16% Similarity=0.174 Sum_probs=100.8
Q ss_pred eeEEEEe--c-CCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCc
Q 013184 193 QVSTLAV--R-DNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERF 269 (448)
Q Consensus 193 ~i~~l~~--~-~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~ 269 (448)
.++.|++ + +.++++....+.|...+++ +.+. .++.....+-.-.+.+ ..+ +.++++.-.++.+.++++...
T Consensus 23 e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vl--r~i~l~g~~D~EgI~y--~g~-~~~vl~~Er~~~L~~~~~~~~ 96 (248)
T PF06977_consen 23 ELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVL--RRIPLDGFGDYEGITY--LGN-GRYVLSEERDQRLYIFTIDDD 96 (248)
T ss_dssp -EEEEEEETTTTEEEEEETTTTEEEEEETT---EE--EEEE-SS-SSEEEEEE---ST-TEEEEEETTTTEEEEEEE---
T ss_pred CccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEE--EEEeCCCCCCceeEEE--ECC-CEEEEEEcCCCcEEEEEEecc
Confidence 3889998 3 4466667777777666653 2332 3333333344556665 333 335555545888999988321
Q ss_pred ----e--EEEEee------cCCCeeEEEECCCCCEEEEEecCCcEEEEECCC---CceeEe--e------ecCCCcEEEE
Q 013184 270 ----Q--LSKHFS------FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQT---GKAIMP--L------CGHLDFSFAS 326 (448)
Q Consensus 270 ----~--~~~~~~------~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~---~~~~~~--l------~~h~~~v~~~ 326 (448)
+ ....+. ....+-.++|.|.++.|+++-...-..|+.+.. ...+.. . ......+.++
T Consensus 97 ~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l 176 (248)
T PF06977_consen 97 TTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGL 176 (248)
T ss_dssp -TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EE
T ss_pred ccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccce
Confidence 1 112222 334588999999888888887766666665543 211111 1 1133457889
Q ss_pred EEcCC-CCEEEEEeCCCcEEEEEccCCCcceEEEccCC---------CCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 013184 327 AWHPD-GRIFATGNQDKTCRVWDVRNLSKSVAVLKGNL---------GAIRSIRFTSDGNFMAMAEPADFVHVY 390 (448)
Q Consensus 327 ~~~p~-g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~---------~~v~~l~~sp~g~~l~s~~~d~~v~vw 390 (448)
+++|. |++++.+.....|.++|.. ++++..+.-.. ...-.|+|.++|+..+++.. +..++|
T Consensus 177 ~~~p~t~~lliLS~es~~l~~~d~~--G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEp-Nlfy~f 247 (248)
T PF06977_consen 177 SYDPRTGHLLILSDESRLLLELDRQ--GRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEP-NLFYRF 247 (248)
T ss_dssp EEETTTTEEEEEETTTTEEEEE-TT----EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETT-TEEEEE
T ss_pred EEcCCCCeEEEEECCCCeEEEECCC--CCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCC-ceEEEe
Confidence 99995 5566777778888889953 56555443222 24678999999987777654 455544
No 377
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.13 E-value=0.046 Score=56.32 Aligned_cols=179 Identities=11% Similarity=0.008 Sum_probs=96.6
Q ss_pred eeeEEEEeCCCCCeeEEEEe-----CCC--cEEEEecCCceEEEEeecCCCeeEEEECCCCCEEEEEecCC-cEEEE---
Q 013184 237 TNAVEIYNSPSGGIHFMASN-----NDC--GVRDFDMERFQLSKHFSFPWPVNHTSLSPDGKLLVIVGDNP-EGILV--- 305 (448)
Q Consensus 237 ~~~v~~~~~~~~~~~l~s~s-----~dg--~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~-~i~i~--- 305 (448)
+....+ +|+|...+++.. .|. .|.+++.. +.. ..+..........|+|+|+.+++..... .+++.
T Consensus 352 vsspai--SpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~ 427 (591)
T PRK13616 352 ITSAAL--SRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRDP 427 (591)
T ss_pred cccceE--CCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecCCCCCCceECCCCCceEEEecCcceEEEeccC
Confidence 344455 899986655552 243 45555643 222 2222233478899999999888776432 22222
Q ss_pred --------ECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEc-c-CCCc-ce---EEEccCC-CCeEEEE
Q 013184 306 --------DSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDV-R-NLSK-SV---AVLKGNL-GAIRSIR 370 (448)
Q Consensus 306 --------d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~-~-~~~~-~~---~~~~~~~-~~v~~l~ 370 (448)
++..+.... .....|..+.|+|||..+|... ++.|.+=-+ + ..+. .+ ..+.... ..+.++.
T Consensus 428 ~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~ 503 (591)
T PRK13616 428 ATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLD 503 (591)
T ss_pred CCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccce
Confidence 333322211 2245799999999999888766 466665222 1 1122 11 1122222 3468899
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCC-Cceeeeeec--CcCceEEEEEccCCCeEEEEEec
Q 013184 371 FTSDGNFMAMAEPADFVHVYDAKN-GFEKEQEID--FFGEISGMTFSPDTEALFIGVWD 426 (448)
Q Consensus 371 ~sp~g~~l~s~~~d~~v~vwd~~~-~~~~~~~~~--~~~~v~~~~fspdg~~L~~~~~D 426 (448)
|.+++.++ ++..++...+|.+.- |.....+.. ....+..|+=+++ .|+++..+
T Consensus 504 W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~ 559 (591)
T PRK13616 504 WRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDAR 559 (591)
T ss_pred EecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCC
Confidence 99998855 555444444454332 222222122 2456777777763 45555443
No 378
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.11 E-value=0.23 Score=46.03 Aligned_cols=228 Identities=16% Similarity=0.139 Sum_probs=124.5
Q ss_pred eCCCCeEEEecCCeEEEEec-CCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEe--cCCEEEEEeCCCeEEEEE
Q 013184 141 STSKHDVYLMSHFSIVHWSS-LSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAV--RDNLLIAGGFQGELICKY 217 (448)
Q Consensus 141 ~~~~~~v~~~~~~~v~~w~~-~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~--~~~~lvsg~~dg~i~vw~ 217 (448)
+..+..++++.+..+.+++. .......+.... .|..|.+ .-+.|++- .||.+.+++
T Consensus 4 ~~~~~~L~vGt~~Gl~~~~~~~~~~~~~i~~~~--------------------~I~ql~vl~~~~~llvL-sd~~l~~~~ 62 (275)
T PF00780_consen 4 DSWGDRLLVGTEDGLYVYDLSDPSKPTRILKLS--------------------SITQLSVLPELNLLLVL-SDGQLYVYD 62 (275)
T ss_pred ccCCCEEEEEECCCEEEEEecCCccceeEeecc--------------------eEEEEEEecccCEEEEE-cCCccEEEE
Confidence 34556677777777888876 222222332221 3666666 22333333 359999999
Q ss_pred cCCCCceeEEE-----------eecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCC----c-eEEEEeecCCCe
Q 013184 218 LDQPGVSFCSR-----------TTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMER----F-QLSKHFSFPWPV 281 (448)
Q Consensus 218 ~~~~~~~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~----~-~~~~~~~~~~~v 281 (448)
+..-....... ........+...+......+...++++. ..+|.+|.... . +..+.+..+..+
T Consensus 63 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~lp~~~ 141 (275)
T PF00780_consen 63 LDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEISLPDPP 141 (275)
T ss_pred chhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEEcCCCc
Confidence 87654322110 0011111122222112344444555554 45888887654 3 566777788999
Q ss_pred eEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecC------------CCcEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 013184 282 NHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGH------------LDFSFASAWHPDGRIFATGNQDKTCRVWDV 349 (448)
Q Consensus 282 ~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h------------~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~ 349 (448)
.+++|. ++.+++|..+ ...+.|+.++.....+... ..++..+.. +++.+|++- +..-.+.|.
T Consensus 142 ~~i~~~--~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~ 215 (275)
T PF00780_consen 142 SSIAFL--GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNK 215 (275)
T ss_pred EEEEEe--CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcC
Confidence 999998 6677777755 5778898877654433211 122333333 345555543 333334444
Q ss_pred cCCCcceE--EEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeee
Q 013184 350 RNLSKSVA--VLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEI 402 (448)
Q Consensus 350 ~~~~~~~~--~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~ 402 (448)
. +.+.+ .+.-. ..+.++++. ..||++... +.|.||++.+++.+..+.
T Consensus 216 ~--G~~~r~~~i~W~-~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~ 264 (275)
T PF00780_consen 216 N--GEPSRKSTIQWS-SAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIP 264 (275)
T ss_pred C--CCcCcccEEEcC-CchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEE
Confidence 2 33322 23322 244556663 358877666 559999999997766555
No 379
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.10 E-value=0.26 Score=46.40 Aligned_cols=222 Identities=13% Similarity=0.014 Sum_probs=129.1
Q ss_pred EEecCCEEEEE----------eCCCeEEEEEcCCCCceeEEEeecCCC----CceeeEEEEeCCCCCeeEEE-EeCCCcE
Q 013184 197 LAVRDNLLIAG----------GFQGELICKYLDQPGVSFCSRTTYDEN----AITNAVEIYNSPSGGIHFMA-SNNDCGV 261 (448)
Q Consensus 197 l~~~~~~lvsg----------~~dg~i~vw~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~s-~s~dg~v 261 (448)
++.+++.++++ -..-.|.+||..+-.......+...+. ...+...+ +.+|+..++. .+--..|
T Consensus 43 ~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~l--s~dgk~~~V~N~TPa~SV 120 (342)
T PF06433_consen 43 LSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFAL--SADGKFLYVQNFTPATSV 120 (342)
T ss_dssp E-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE---TTSSEEEEEEESSSEEE
T ss_pred ECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEE--ccCCcEEEEEccCCCCeE
Confidence 44566666653 345578899998876555455543311 12233434 6677633332 2335678
Q ss_pred EEEecCCceEEEEeecCCCeeEEEECCCCCEEEEEecCCcEEEEECC-CCceeEee----ecCCCcEE-EEEEcCCCCEE
Q 013184 262 RDFDMERFQLSKHFSFPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQ-TGKAIMPL----CGHLDFSF-ASAWHPDGRIF 335 (448)
Q Consensus 262 ~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~-~~~~~~~l----~~h~~~v~-~~~~~p~g~~l 335 (448)
.|.|++.++.+..+.-++...-.-.. .+-+.+.|.||.+.-..+. .|+..++. ....++++ .-++...+..+
T Consensus 121 tVVDl~~~kvv~ei~~PGC~~iyP~~--~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~ 198 (342)
T PF06433_consen 121 TVVDLAAKKVVGEIDTPGCWLIYPSG--NRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRL 198 (342)
T ss_dssp EEEETTTTEEEEEEEGTSEEEEEEEE--TTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEE
T ss_pred EEEECCCCceeeeecCCCEEEEEecC--CCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeE
Confidence 89999999999988877744333222 2458888899998888776 56554322 12223333 33455555556
Q ss_pred EEEeCCCcEEEEEccCCCc-ceEEEccC----------CCCeEEEEEcCCCCEEEEEeCC----------CeEEEEECCC
Q 013184 336 ATGNQDKTCRVWDVRNLSK-SVAVLKGN----------LGAIRSIRFTSDGNFMAMAEPA----------DFVHVYDAKN 394 (448)
Q Consensus 336 ~s~~~d~~i~iwd~~~~~~-~~~~~~~~----------~~~v~~l~~sp~g~~l~s~~~d----------~~v~vwd~~~ 394 (448)
+--+..|.|+--|+..... ....+..- .+.-.-+++++....|.+.-.. ..|.++|+.+
T Consensus 199 ~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t 278 (342)
T PF06433_consen 199 YFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKT 278 (342)
T ss_dssp EEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTT
T ss_pred EEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCC
Confidence 6678889888888864221 11122110 1233457787755544443221 1699999999
Q ss_pred CceeeeeecCcCceEEEEEccCCCeEEEE
Q 013184 395 GFEKEQEIDFFGEISGMTFSPDTEALFIG 423 (448)
Q Consensus 395 ~~~~~~~~~~~~~v~~~~fspdg~~L~~~ 423 (448)
++++..+.. ..++.+|+.+.+.+=++.+
T Consensus 279 ~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~ 306 (342)
T PF06433_consen 279 HKRVARIPL-EHPIDSIAVSQDDKPLLYA 306 (342)
T ss_dssp TEEEEEEEE-EEEESEEEEESSSS-EEEE
T ss_pred CeEEEEEeC-CCccceEEEccCCCcEEEE
Confidence 998887763 3568899999988745544
No 380
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=97.07 E-value=0.075 Score=52.84 Aligned_cols=120 Identities=18% Similarity=0.234 Sum_probs=78.1
Q ss_pred EEEEeecCCCeeEEEECCC----CCEEEEEecCCcEEEEECC-----CCceeEeeecCC-C----cEEEEEEcCCCCEEE
Q 013184 271 LSKHFSFPWPVNHTSLSPD----GKLLVIVGDNPEGILVDSQ-----TGKAIMPLCGHL-D----FSFASAWHPDGRIFA 336 (448)
Q Consensus 271 ~~~~~~~~~~v~~~~~sp~----~~~l~~~~~d~~i~i~d~~-----~~~~~~~l~~h~-~----~v~~~~~~p~g~~l~ 336 (448)
.+..|+| |..++|.|- ...+++......|.+|.+. +++.+..-..+- . -...+.|||....|+
T Consensus 52 viGqFEh---V~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~ 128 (671)
T PF15390_consen 52 VIGQFEH---VHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILT 128 (671)
T ss_pred Eeeccce---eeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEE
Confidence 4444443 788999983 3345556666799999875 233332211111 1 123578999988887
Q ss_pred EEeCCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCC-eEEEEECC
Q 013184 337 TGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPAD-FVHVYDAK 393 (448)
Q Consensus 337 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~-~v~vwd~~ 393 (448)
.-.....-.+.+++..+..++.-....+-|.|.+|.+||+.|++|-... .-+|||-.
T Consensus 129 VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 129 VLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred EEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 7766655566777765555555445678899999999999888775442 45788843
No 381
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=97.06 E-value=0.32 Score=51.68 Aligned_cols=199 Identities=13% Similarity=0.109 Sum_probs=112.1
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCC-----CceeeEEEEeCCC-------------CCeeEEEEeCCCcEE
Q 013184 201 DNLLIAGGFQGELICKYLDQPGVSFCSRTTYDEN-----AITNAVEIYNSPS-------------GGIHFMASNNDCGVR 262 (448)
Q Consensus 201 ~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~-------------~~~~l~s~s~dg~v~ 262 (448)
+..|+.++.++.|...|..+++..-......... ..++.+.++..+. ....++.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 5667777778888888877666432222211111 0122333332221 123677888899999
Q ss_pred EEecCCceEEEEeecCCCee-------------EEEECC--CCCEEEEEec----------CCcEEEEECCCCceeEeee
Q 013184 263 DFDMERFQLSKHFSFPWPVN-------------HTSLSP--DGKLLVIVGD----------NPEGILVDSQTGKAIMPLC 317 (448)
Q Consensus 263 iwd~~~~~~~~~~~~~~~v~-------------~~~~sp--~~~~l~~~~~----------d~~i~i~d~~~~~~~~~l~ 317 (448)
-.|.++|+.+..+...+.|. .+.-+| .+..+++++. +|.|+-+|.++|+.+..+.
T Consensus 274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWD 353 (764)
T ss_pred EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEe
Confidence 99999999998776444331 122233 3456666643 5789999999999887664
Q ss_pred cC---------CCcE---------EEEEEcCCCCEEEEEeC------------------CCcEEEEEccCCCcceEEEcc
Q 013184 318 GH---------LDFS---------FASAWHPDGRIFATGNQ------------------DKTCRVWDVRNLSKSVAVLKG 361 (448)
Q Consensus 318 ~h---------~~~v---------~~~~~~p~g~~l~s~~~------------------d~~i~iwd~~~~~~~~~~~~~ 361 (448)
.- .+.+ ...+++|...+++.+.. .++|.-.|+++ ++.+-.++.
T Consensus 354 ~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~T-Gk~~W~~Q~ 432 (764)
T TIGR03074 354 PGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATT-GKERWVFQT 432 (764)
T ss_pred cCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCC-CceEEEecc
Confidence 20 0111 12345554444444321 12344445544 444333322
Q ss_pred -CC-C-------CeEEEEEcC-CCC---EEEEEeCCCeEEEEECCCCceeee
Q 013184 362 -NL-G-------AIRSIRFTS-DGN---FMAMAEPADFVHVYDAKNGFEKEQ 400 (448)
Q Consensus 362 -~~-~-------~v~~l~~sp-~g~---~l~s~~~d~~v~vwd~~~~~~~~~ 400 (448)
|. - ...-+.+.. +|+ .++.++.+|.++++|.++|+.+..
T Consensus 433 ~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~ 484 (764)
T TIGR03074 433 VHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVP 484 (764)
T ss_pred cCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence 11 0 111122322 563 888999999999999999987654
No 382
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=96.90 E-value=0.0046 Score=38.78 Aligned_cols=38 Identities=32% Similarity=0.598 Sum_probs=31.0
Q ss_pred CCeEEEEEcCCC---CEEEEEeCCCeEEEEECCCCceeeee
Q 013184 364 GAIRSIRFTSDG---NFMAMAEPADFVHVYDAKNGFEKEQE 401 (448)
Q Consensus 364 ~~v~~l~~sp~g---~~l~s~~~d~~v~vwd~~~~~~~~~~ 401 (448)
++|++++|||.. .+|+.+...|.|+|+|++++....+.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~f~~~QV 41 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSNFMRRQV 41 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccCccceEe
Confidence 478999999844 59999999999999999976555443
No 383
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.87 E-value=0.068 Score=55.01 Aligned_cols=218 Identities=15% Similarity=0.163 Sum_probs=114.6
Q ss_pred cCCEEEEEeCCC------eEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCC------CcEEEEecC
Q 013184 200 RDNLLIAGGFQG------ELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNND------CGVRDFDME 267 (448)
Q Consensus 200 ~~~~lvsg~~dg------~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d------g~v~iwd~~ 267 (448)
.+.+++.||..+ .+.++|..+........+..... ..++.+ -. +.+.++|+.+ .++..||..
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~--~~~~~~---~~-~~lYv~GG~~~~~~~l~~ve~YD~~ 357 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRC--RVGVAV---LN-GKLYVVGGYDSGSDRLSSVERYDPR 357 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccc--cccEEE---EC-CEEEEEccccCCCcccceEEEecCC
Confidence 456677777774 56778877765444333332211 222322 12 3588888888 357788888
Q ss_pred CceEEEEeecCCCeeEEEEC-CCCCEEEEEecCC-----cEEEEECCCCcee--EeeecCCCcEEEEEEcCCCCEEEEEe
Q 013184 268 RFQLSKHFSFPWPVNHTSLS-PDGKLLVIVGDNP-----EGILVDSQTGKAI--MPLCGHLDFSFASAWHPDGRIFATGN 339 (448)
Q Consensus 268 ~~~~~~~~~~~~~v~~~~~s-p~~~~l~~~~~d~-----~i~i~d~~~~~~~--~~l~~h~~~v~~~~~~p~g~~l~s~~ 339 (448)
+++....-.-..+-...... -+|.+.|+||.+| .+..||..+.+.- ..+.......-.+.+ +|.+.++|+
T Consensus 358 ~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~--~g~iYi~GG 435 (571)
T KOG4441|consen 358 TNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVL--GGKLYIIGG 435 (571)
T ss_pred CCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEE--CCEEEEEcC
Confidence 87755422211111111111 2588888898886 4777887766532 222211122222222 688888888
Q ss_pred CCC------cEEEEEccCCC-cceEEEccCCCCeEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCceeeeeecCcCc
Q 013184 340 QDK------TCRVWDVRNLS-KSVAVLKGNLGAIRSIRFTSDGNFMAMAEPAD-----FVHVYDAKNGFEKEQEIDFFGE 407 (448)
Q Consensus 340 ~d~------~i~iwd~~~~~-~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~-----~v~vwd~~~~~~~~~~~~~~~~ 407 (448)
.++ ++..||..+.. ..+..+........ ++ .-++...+.|+.++ +|..||..+.+-... ..-..+
T Consensus 436 ~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v-~~m~~~ 512 (571)
T KOG4441|consen 436 GDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMV-APMTSP 512 (571)
T ss_pred cCCCccccceEEEEcCCCCceeecCCcccccccce-EE-EECCEEEEECCccCCCccceEEEEcCCCCceeEc-ccCccc
Confidence 554 46778876521 11112221111111 22 22577778888776 477899877654332 211111
Q ss_pred eEEEEE-ccCCCeEEEEEecCC
Q 013184 408 ISGMTF-SPDTEALFIGVWDRT 428 (448)
Q Consensus 408 v~~~~f-spdg~~L~~~~~D~~ 428 (448)
...+.. .-+++..++|++|+.
T Consensus 513 rs~~g~~~~~~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 513 RSAVGVVVLGGKLYAVGGFDGN 534 (571)
T ss_pred cccccEEEECCEEEEEecccCc
Confidence 112111 225677788888875
No 384
>PHA02713 hypothetical protein; Provisional
Probab=96.82 E-value=0.038 Score=56.91 Aligned_cols=149 Identities=11% Similarity=0.059 Sum_probs=82.3
Q ss_pred eEEEEecCCEEEEEeCCC-----eEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCC----------
Q 013184 194 VSTLAVRDNLLIAGGFQG-----ELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNND---------- 258 (448)
Q Consensus 194 i~~l~~~~~~lvsg~~dg-----~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d---------- 258 (448)
....+.++++.+.||.+| .+.+|+..+........+....... .++.+ + +.+.+.|+.+
T Consensus 345 ~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~-~~~~~----~-g~IYviGG~~~~~~~~~~~~ 418 (557)
T PHA02713 345 FSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSY-GMCVL----D-QYIYIIGGRTEHIDYTSVHH 418 (557)
T ss_pred eeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccc-cEEEE----C-CEEEEEeCCCcccccccccc
Confidence 344455899999999875 3778888776543322222111111 12211 3 3466666654
Q ss_pred -------------CcEEEEecCCceEEEEee--cCCCeeEEEECCCCCEEEEEecC------CcEEEEECCC-Cce--eE
Q 013184 259 -------------CGVRDFDMERFQLSKHFS--FPWPVNHTSLSPDGKLLVIVGDN------PEGILVDSQT-GKA--IM 314 (448)
Q Consensus 259 -------------g~v~iwd~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~~~~~d------~~i~i~d~~~-~~~--~~ 314 (448)
..+..||.++.+....-. .+..-.+++ .-++++.++||.+ ..+..||..+ .+- +.
T Consensus 419 ~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~ 497 (557)
T PHA02713 419 MNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELIT 497 (557)
T ss_pred cccccccccccccceEEEECCCCCeEeecCCCCcccccCcEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcc
Confidence 247788888776543322 111111222 2246777777654 2467899887 443 33
Q ss_pred eeecCCCcEEEEEEcCCCCEEEEEeCCC--cEEEEEccC
Q 013184 315 PLCGHLDFSFASAWHPDGRIFATGNQDK--TCRVWDVRN 351 (448)
Q Consensus 315 ~l~~h~~~v~~~~~~p~g~~l~s~~~d~--~i~iwd~~~ 351 (448)
.+.........+.. +|++.++|+.++ ++..||+.+
T Consensus 498 ~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~ 534 (557)
T PHA02713 498 TTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYT 534 (557)
T ss_pred ccCcccccceeEEE--CCEEEEEeeecceeehhhcCccc
Confidence 34333333333333 688889999888 677777764
No 385
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.79 E-value=0.1 Score=53.76 Aligned_cols=193 Identities=16% Similarity=0.190 Sum_probs=102.4
Q ss_pred eEEEEecCCEEEEEeCC-C-----eEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCc-----EE
Q 013184 194 VSTLAVRDNLLIAGGFQ-G-----ELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCG-----VR 262 (448)
Q Consensus 194 i~~l~~~~~~lvsg~~d-g-----~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~-----v~ 262 (448)
......++.+.++||.+ | .+-+||..+........+...... -++.. -++.+.++|+.||. |-
T Consensus 326 ~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~--~~v~~----l~g~iYavGG~dg~~~l~svE 399 (571)
T KOG4441|consen 326 VGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSD--FGVAV----LDGKLYAVGGFDGEKSLNSVE 399 (571)
T ss_pred ccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCcccc--ceeEE----ECCEEEEEeccccccccccEE
Confidence 33444488999999999 3 455667666654322222111111 11211 23457888888864 66
Q ss_pred EEecCCceEEEEeecCCCeeEEEEC-CCCCEEEEEecCC------cEEEEECCCCceeE--eeecCCCcEEEEEEcCCCC
Q 013184 263 DFDMERFQLSKHFSFPWPVNHTSLS-PDGKLLVIVGDNP------EGILVDSQTGKAIM--PLCGHLDFSFASAWHPDGR 333 (448)
Q Consensus 263 iwd~~~~~~~~~~~~~~~v~~~~~s-p~~~~l~~~~~d~------~i~i~d~~~~~~~~--~l~~h~~~v~~~~~~p~g~ 333 (448)
.||..+.+....-....+....... -+|++.++||.++ .+..||..+++... .+..-........+ ++.
T Consensus 400 ~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~--~~~ 477 (571)
T KOG4441|consen 400 CYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVL--NGK 477 (571)
T ss_pred EecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEE--CCE
Confidence 7787776543332222122222222 2577888887543 56788888775432 22222222222222 677
Q ss_pred EEEEEeCCC-----cEEEEEccCCC-cceEEEccCCCCeEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCc
Q 013184 334 IFATGNQDK-----TCRVWDVRNLS-KSVAVLKGNLGAIRSIRFTSDGNFMAMAEPAD-----FVHVYDAKNGF 396 (448)
Q Consensus 334 ~l~s~~~d~-----~i~iwd~~~~~-~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~-----~v~vwd~~~~~ 396 (448)
+.+.|+.|+ +|..||..+.. ..+..+......+..+.+ +++..++|+.++ +|-.||..+.+
T Consensus 478 iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 478 IYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred EEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE--CCEEEEEecccCccccceeEEcCCCCCc
Confidence 888888776 37778886521 112222222233322332 467777777765 57777766554
No 386
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.76 E-value=0.82 Score=46.80 Aligned_cols=54 Identities=24% Similarity=0.264 Sum_probs=39.8
Q ss_pred cEEEEecCCceEEEEeec-C---------CCeeEEEECCCCC---EEEEEecCCcEEEEECCCCcee
Q 013184 260 GVRDFDMERFQLSKHFSF-P---------WPVNHTSLSPDGK---LLVIVGDNPEGILVDSQTGKAI 313 (448)
Q Consensus 260 ~v~iwd~~~~~~~~~~~~-~---------~~v~~~~~sp~~~---~l~~~~~d~~i~i~d~~~~~~~ 313 (448)
.|.-.|+++|+++.+++. + .+..-+.+..+|+ .++.+..+|.+.+.|..+|+.+
T Consensus 272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 577789999999988872 1 1122233334666 7778899999999999999886
No 387
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.76 E-value=0.56 Score=47.97 Aligned_cols=193 Identities=12% Similarity=0.066 Sum_probs=110.1
Q ss_pred cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCc--------eeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceE
Q 013184 200 RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAI--------TNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQL 271 (448)
Q Consensus 200 ~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~--------~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~ 271 (448)
.+..+++++.+|.|...|..+.+.............. ...+.+ .+. .++.++.++.|.-+|.++|+.
T Consensus 68 ~~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av----~~~-~v~v~t~dg~l~ALDa~TGk~ 142 (527)
T TIGR03075 68 VDGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL----YDG-KVFFGTLDARLVALDAKTGKV 142 (527)
T ss_pred ECCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE----ECC-EEEEEcCCCEEEEEECCCCCE
Confidence 3667777788888888888877644333221111000 011112 122 577788899999999999999
Q ss_pred EEEeecCCC--eeEEEECC--CCCEEEEEec------CCcEEEEECCCCceeEeeecCCC--------------------
Q 013184 272 SKHFSFPWP--VNHTSLSP--DGKLLVIVGD------NPEGILVDSQTGKAIMPLCGHLD-------------------- 321 (448)
Q Consensus 272 ~~~~~~~~~--v~~~~~sp--~~~~l~~~~~------d~~i~i~d~~~~~~~~~l~~h~~-------------------- 321 (448)
+..+..... -..+.-+| .+..++++.. ++.|..+|.++|+.+-.+..-..
T Consensus 143 ~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~t 222 (527)
T TIGR03075 143 VWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKT 222 (527)
T ss_pred EeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCC
Confidence 887662111 01122233 2335555542 67899999999998765432110
Q ss_pred -----------cE-EEEEEcCCCCEEEEEeCC-----C-----------cEEEEEccCCCcceEEEcc--CCC-------
Q 013184 322 -----------FS-FASAWHPDGRIFATGNQD-----K-----------TCRVWDVRNLSKSVAVLKG--NLG------- 364 (448)
Q Consensus 322 -----------~v-~~~~~~p~g~~l~s~~~d-----~-----------~i~iwd~~~~~~~~~~~~~--~~~------- 364 (448)
.+ ..+++.|...+++.+... + +|.-.|+++ ++..-.++. |..
T Consensus 223 w~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~T-G~~~W~~Q~~~~D~wD~d~~~ 301 (527)
T TIGR03075 223 WPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDT-GKIKWHYQTTPHDEWDYDGVN 301 (527)
T ss_pred CCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEcccc-CCEEEeeeCCCCCCccccCCC
Confidence 01 123566655555554422 1 355556655 444433332 211
Q ss_pred CeEEEEEcCCCC---EEEEEeCCCeEEEEECCCCcee
Q 013184 365 AIRSIRFTSDGN---FMAMAEPADFVHVYDAKNGFEK 398 (448)
Q Consensus 365 ~v~~l~~sp~g~---~l~s~~~d~~v~vwd~~~~~~~ 398 (448)
...-+.+..+|+ .++.+..+|.+++.|-.+|+.+
T Consensus 302 ~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 302 EMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred CcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 111122334776 7889999999999999999875
No 388
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.69 E-value=0.13 Score=49.98 Aligned_cols=145 Identities=14% Similarity=0.134 Sum_probs=80.4
Q ss_pred CCeeEEEECCCCCEEEEEe-----------cCC-cEEEEECCC--Cce--eEeeecCCCcEEEEEEcCCCCEEEEEeCCC
Q 013184 279 WPVNHTSLSPDGKLLVIVG-----------DNP-EGILVDSQT--GKA--IMPLCGHLDFSFASAWHPDGRIFATGNQDK 342 (448)
Q Consensus 279 ~~v~~~~~sp~~~~l~~~~-----------~d~-~i~i~d~~~--~~~--~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~ 342 (448)
.....++|.++|+++++-. ..+ .|.+++-.+ |+. ...+.........+++.++| +++ ++...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCe
Confidence 3456788888888776642 122 676765432 332 23343334456789999998 444 44444
Q ss_pred cEEEEEccCCC----c--ce-EEEcc----CCCCeEEEEEcCCCCEEEEEeCC-------------------CeEEEEEC
Q 013184 343 TCRVWDVRNLS----K--SV-AVLKG----NLGAIRSIRFTSDGNFMAMAEPA-------------------DFVHVYDA 392 (448)
Q Consensus 343 ~i~iwd~~~~~----~--~~-~~~~~----~~~~v~~l~~sp~g~~l~s~~~d-------------------~~v~vwd~ 392 (448)
..++.|..... + .+ ..+.. +....+.++|.|||.+.++-+.. +.|.-++.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 33444543211 1 11 12222 12347789999999866544411 34555665
Q ss_pred CCCceeeeeecCcCceEEEEEccCCCeEEEEEec
Q 013184 393 KNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWD 426 (448)
Q Consensus 393 ~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D 426 (448)
..+. ...+........+++|+|+|+.+++-..+
T Consensus 172 dg~~-~e~~a~G~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 172 DGGK-LRVVAHGFQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred CCCe-EEEEecCcCCCccceECCCCCEEEEccCC
Confidence 4433 22222223346799999999887664433
No 389
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.69 E-value=0.37 Score=46.21 Aligned_cols=137 Identities=16% Similarity=0.084 Sum_probs=77.2
Q ss_pred CCCCCeeEEEEeCCC--cEEEEecCCceEEEEeecC-CCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCC
Q 013184 245 SPSGGIHFMASNNDC--GVRDFDMERFQLSKHFSFP-WPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLD 321 (448)
Q Consensus 245 ~~~~~~~l~s~s~dg--~v~iwd~~~~~~~~~~~~~-~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~ 321 (448)
.++|+++|+++..+| .+.+.|+.+++..+....+ .......++|+++.++-......++-.|+.+.+..........
T Consensus 44 t~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~ 123 (386)
T PF14583_consen 44 TDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDD 123 (386)
T ss_dssp -TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TT
T ss_pred CCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcc
Confidence 567877777666565 4667799999988887744 2334567789888887776667899999999887655665666
Q ss_pred cEEEEEEc--CCCCEEEEEeC----------------------CCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCE
Q 013184 322 FSFASAWH--PDGRIFATGNQ----------------------DKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNF 377 (448)
Q Consensus 322 ~v~~~~~~--p~g~~l~s~~~----------------------d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~ 377 (448)
.+-...|. .++..++-.-. .+.|...|+.+ ....++......+..+.|||...-
T Consensus 124 ~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~t--G~~~~v~~~~~wlgH~~fsP~dp~ 201 (386)
T PF14583_consen 124 WKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKT--GERKVVFEDTDWLGHVQFSPTDPT 201 (386)
T ss_dssp EEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT----EEEEEEESS-EEEEEEETTEEE
T ss_pred cccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCC--CceeEEEecCccccCcccCCCCCC
Confidence 66556664 45665543311 11233344443 334444445567889999997655
Q ss_pred EEEEeC
Q 013184 378 MAMAEP 383 (448)
Q Consensus 378 l~s~~~ 383 (448)
+++=+.
T Consensus 202 li~fCH 207 (386)
T PF14583_consen 202 LIMFCH 207 (386)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 555443
No 390
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.66 E-value=0.0067 Score=63.74 Aligned_cols=100 Identities=16% Similarity=0.193 Sum_probs=75.1
Q ss_pred CCCEEEEEecCCcEEEEECCCC-ceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeE
Q 013184 289 DGKLLVIVGDNPEGILVDSQTG-KAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIR 367 (448)
Q Consensus 289 ~~~~l~~~~~d~~i~i~d~~~~-~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~ 367 (448)
.+..+++|++.|.+...|.... .+.+.-..-.++|++++|+.+|..++.|-.+|.|.+||+.. ++.++.+..|..+..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~-~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHR-AKILKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccC-CcceeeeeecCCccc
Confidence 4667899999999999887653 11122222457899999999999999999999999999976 788888877766544
Q ss_pred E---EEEcCCCCEEEEEeCCCeEEEEE
Q 013184 368 S---IRFTSDGNFMAMAEPADFVHVYD 391 (448)
Q Consensus 368 ~---l~~sp~g~~l~s~~~d~~v~vwd 391 (448)
. +.+..++..++++...|. +|.
T Consensus 177 ~vi~v~~t~~nS~llt~D~~Gs--f~~ 201 (1206)
T KOG2079|consen 177 GVIFVGRTSQNSKLLTSDTGGS--FWK 201 (1206)
T ss_pred eEEEEEEeCCCcEEEEccCCCc--eEE
Confidence 4 344556667888877775 454
No 391
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.58 E-value=0.81 Score=44.48 Aligned_cols=180 Identities=11% Similarity=0.085 Sum_probs=82.7
Q ss_pred cCCEEEEE--eC----CCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeC----------------
Q 013184 200 RDNLLIAG--GF----QGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNN---------------- 257 (448)
Q Consensus 200 ~~~~lvsg--~~----dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~---------------- 257 (448)
+|++++++ .. -|.+.+.|-++-.+. .+-..........-.++..|..+ .++++..
T Consensus 140 ~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~--g~We~~~~~~~~gYDfw~qpr~n-vMiSSeWg~P~~~~~Gf~~~d~~ 216 (461)
T PF05694_consen 140 DGRIMISALGDADGNGPGGFVLLDGETFEVK--GRWEKDRGPQPFGYDFWYQPRHN-VMISSEWGAPSMFEKGFNPEDLE 216 (461)
T ss_dssp S--EEEEEEEETTS-S--EEEEE-TTT--EE--EE--SB-TT------EEEETTTT-EEEE-B---HHHHTT---TTTHH
T ss_pred CccEEEEeccCCCCCCCCcEEEEcCcccccc--ceeccCCCCCCCCCCeEEcCCCC-EEEEeccCChhhcccCCChhHhh
Confidence 56666663 22 244555555443332 22222223334455666667655 5555532
Q ss_pred ----CCcEEEEecCCceEEEEeecC---CCeeEEEECC--CCCEEEEEe-cCCcEEEEEC-CCCce----eEeeec----
Q 013184 258 ----DCGVRDFDMERFQLSKHFSFP---WPVNHTSLSP--DGKLLVIVG-DNPEGILVDS-QTGKA----IMPLCG---- 318 (448)
Q Consensus 258 ----dg~v~iwd~~~~~~~~~~~~~---~~v~~~~~sp--~~~~l~~~~-~d~~i~i~d~-~~~~~----~~~l~~---- 318 (448)
-.++.+||+.+.+.++++... ..+..+.|.. +..+-++++ -..+|..|-. ..++- +..+..
T Consensus 217 ~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~ 296 (461)
T PF05694_consen 217 AGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVE 296 (461)
T ss_dssp HH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--
T ss_pred cccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccC
Confidence 357999999999999999844 2355677754 444444433 3445555433 33321 111211
Q ss_pred -C------------CCcEEEEEEcCCCCEEEEEe-CCCcEEEEEccCCCcceEEEccC------------------CCCe
Q 013184 319 -H------------LDFSFASAWHPDGRIFATGN-QDKTCRVWDVRNLSKSVAVLKGN------------------LGAI 366 (448)
Q Consensus 319 -h------------~~~v~~~~~~p~g~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~------------------~~~v 366 (448)
- ..-++.+..|.|.++|..++ ..|.||.||+..+..+..+-+-. .+..
T Consensus 297 ~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgP 376 (461)
T PF05694_consen 297 GWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGP 376 (461)
T ss_dssp SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S--
T ss_pred cccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCC
Confidence 0 24478899999999887776 48999999998765554432211 1234
Q ss_pred EEEEEcCCCCEEEEEe
Q 013184 367 RSIRFTSDGNFMAMAE 382 (448)
Q Consensus 367 ~~l~~sp~g~~l~s~~ 382 (448)
.-+..|.||+.|....
T Consensus 377 qMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 377 QMVQLSLDGKRLYVTN 392 (461)
T ss_dssp --EEE-TTSSEEEEE-
T ss_pred CeEEEccCCeEEEEEe
Confidence 6788888888877654
No 392
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=96.56 E-value=0.59 Score=42.70 Aligned_cols=260 Identities=15% Similarity=0.074 Sum_probs=143.9
Q ss_pred CCCCeEEEecCC-eEEEEecCCCceeEEEecCCCCCCCCCCCCCcccCCcceeeEEEEecCCEEEEEeCCCeEEEEEcCC
Q 013184 142 TSKHDVYLMSHF-SIVHWSSLSSKRTEVLDVSGHVAPCEKHPGNLLEGFTQTQVSTLAVRDNLLIAGGFQGELICKYLDQ 220 (448)
Q Consensus 142 ~~~~~v~~~~~~-~v~~w~~~~~~~~~~~~~~gh~~p~~~~~~~~~~~~~~~~i~~l~~~~~~lvsg~~dg~i~vw~~~~ 220 (448)
-++..+|++... .+++.|..+......+..- . ....-.++.+.|++..++..+.-+.+.|+..
T Consensus 94 vse~yvyvad~ssGL~IvDIS~P~sP~~~~~l---n-------------t~gyaygv~vsGn~aYVadlddgfLivdvsd 157 (370)
T COG5276 94 VSEEYVYVADWSSGLRIVDISTPDSPTLIGFL---N-------------TDGYAYGVYVSGNYAYVADLDDGFLIVDVSD 157 (370)
T ss_pred ecccEEEEEcCCCceEEEeccCCCCcceeccc---c-------------CCceEEEEEecCCEEEEeeccCcEEEEECCC
Confidence 345667777533 4888887665544433211 0 0012456777999999998777777889988
Q ss_pred CCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCc---eEEEEeecCCCeeEEEECCCCCEEEEEe
Q 013184 221 PGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERF---QLSKHFSFPWPVNHTSLSPDGKLLVIVG 297 (448)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~---~~~~~~~~~~~v~~~~~sp~~~~l~~~~ 297 (448)
+......-.......-+..+.+ +|+ +...+..|+.+.+.|+... .++.+......+.++..+++..+++...
T Consensus 158 pssP~lagrya~~~~d~~~v~I----SGn-~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~ 232 (370)
T COG5276 158 PSSPQLAGRYALPGGDTHDVAI----SGN-YAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYD 232 (370)
T ss_pred CCCceeeeeeccCCCCceeEEE----ecC-eEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcc
Confidence 7754433333333333334444 344 6677778899999998653 3455555555788888887665555443
Q ss_pred cCCcEEEEECCCCceeEeeec--CCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEE--EccCCCCeEEEEEcC
Q 013184 298 DNPEGILVDSQTGKAIMPLCG--HLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAV--LKGNLGAIRSIRFTS 373 (448)
Q Consensus 298 ~d~~i~i~d~~~~~~~~~l~~--h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~--~~~~~~~v~~l~~sp 373 (448)
.-+.+.|..+.+....+.. ...++.--.+.=.+++......+.-+.+-|+.++..+... +......-..++.+
T Consensus 233 --egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~ay- 309 (370)
T COG5276 233 --EGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRAY- 309 (370)
T ss_pred --cceEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceEEe-
Confidence 3577888777664444322 1222211122224666667777777888888765444321 21112123334433
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEecC
Q 013184 374 DGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVWDR 427 (448)
Q Consensus 374 ~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~ 427 (448)
|.++..+..+ ...+.+....+..-...+....+.+.+.+-+.+.+.+.-+++
T Consensus 310 -~~y~yiadkn-~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~ 361 (370)
T COG5276 310 -GNYNYIADKN-TGAVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNG 361 (370)
T ss_pred -cCeeEeccCC-ceEEEeCCChhhcccccCcceEeeecceEEEeeEEEEeecCC
Confidence 4555555444 445555544332222222222344444555566777777763
No 393
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.52 E-value=0.0059 Score=53.27 Aligned_cols=140 Identities=11% Similarity=0.100 Sum_probs=86.1
Q ss_pred eEEEEeCCCcEEEEecCCceEEEEee--cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEee-ecCCCcEE-EE
Q 013184 251 HFMASNNDCGVRDFDMERFQLSKHFS--FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPL-CGHLDFSF-AS 326 (448)
Q Consensus 251 ~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l-~~h~~~v~-~~ 326 (448)
.+...+.||.|+-+++...+...... +... .....-+..+++|+.+|.|.+|.....-..... ..-...+- .+
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~I 108 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGI 108 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceecc
Confidence 45556678888888776543221111 1111 111224678999999999999987622111111 11112222 22
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCC-CCeEEEEEcCCCCEEEEE--eCCCeEEEEECCC
Q 013184 327 AWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNL-GAIRSIRFTSDGNFMAMA--EPADFVHVYDAKN 394 (448)
Q Consensus 327 ~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~~v~~l~~sp~g~~l~s~--~~d~~v~vwd~~~ 394 (448)
.--.++.+..++.++|.||.|++.- .+.+-....|. .++..+..+..+++|+.+ +.+..++.|++..
T Consensus 109 p~~~~~~~~c~~~~dg~ir~~n~~p-~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 109 PNGRDSSLGCVGAQDGRIRACNIKP-NKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ccccccceeEEeccCCceeeecccc-CceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 2223556889999999999999964 66666666666 566666666777888887 7788888888764
No 394
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.52 E-value=0.0086 Score=62.95 Aligned_cols=97 Identities=14% Similarity=0.110 Sum_probs=74.2
Q ss_pred eEEEEeCCCcEEEEecCCceE--EEEeecCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEE---E
Q 013184 251 HFMASNNDCGVRDFDMERFQL--SKHFSFPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSF---A 325 (448)
Q Consensus 251 ~l~s~s~dg~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~---~ 325 (448)
.++.|+..|.|-..|+.+.-. .+-....++|.+++|+.+|+.++.|-.+|.|.+||+..++.++.+..|..+.. .
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~ 180 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIF 180 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEE
Confidence 577888888888888765311 22223678999999999999999999999999999999999988876665544 4
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEc
Q 013184 326 SAWHPDGRIFATGNQDKTCRVWDV 349 (448)
Q Consensus 326 ~~~~p~g~~l~s~~~d~~i~iwd~ 349 (448)
+.|..++..++++...|. +|.+
T Consensus 181 v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 181 VGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEeCCCcEEEEccCCCc--eEEE
Confidence 455556667888877775 5543
No 395
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=96.52 E-value=0.072 Score=51.95 Aligned_cols=144 Identities=15% Similarity=0.229 Sum_probs=96.4
Q ss_pred CCCCeeEEEEeCCCcEEEEecCCceEEEEeecCCCeeEEEECCCCC-------EEEEEecCCcEEEEECCC-CceeEeee
Q 013184 246 PSGGIHFMASNNDCGVRDFDMERFQLSKHFSFPWPVNHTSLSPDGK-------LLVIVGDNPEGILVDSQT-GKAIMPLC 317 (448)
Q Consensus 246 ~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~-------~l~~~~~d~~i~i~d~~~-~~~~~~l~ 317 (448)
.+.+.++..++.-..++-.|++.|+++........| -+.+.|..+ .-++|-.+..|.-.|.+- |..+....
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e 555 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE 555 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee
Confidence 344546667777888999999999999888855555 677887432 233455555666667653 32222221
Q ss_pred cCCCcEEEEEEc----CCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 013184 318 GHLDFSFASAWH----PDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAK 393 (448)
Q Consensus 318 ~h~~~v~~~~~~----p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~ 393 (448)
..++++.-.|+ ....|+|.++..|-||+||--. ......+++-...|..+..+.+|++|++.+.. .+.+-|++
T Consensus 556 -sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig-~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-yllL~d~~ 632 (776)
T COG5167 556 -SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIG-KRAKTALPGLGDAIKHIDVTANGKHILATCKN-YLLLTDVP 632 (776)
T ss_pred -ehhccccccccccccccCceEEEecCCCceeeehhhc-chhhhcCcccccceeeeEeecCCcEEEEeecc-eEEEEecc
Confidence 23333333333 2345999999999999999642 44555677777889999999999998887654 56677654
No 396
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.48 E-value=0.55 Score=41.45 Aligned_cols=218 Identities=17% Similarity=0.174 Sum_probs=113.9
Q ss_pred cCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeE-EEEeCCCcEEEEec--CCceEEEEee
Q 013184 200 RDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHF-MASNNDCGVRDFDM--ERFQLSKHFS 276 (448)
Q Consensus 200 ~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~s~dg~v~iwd~--~~~~~~~~~~ 276 (448)
.+.+|.+--..|.|.-||..+..... ..+.... .+-.++.-.++...+ +.++..-.|.-||- +.-.+.+++.
T Consensus 26 ~~sLl~VDi~ag~v~r~D~~qn~v~r-a~ie~p~----~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ 100 (310)
T KOG4499|consen 26 RQSLLYVDIEAGEVHRYDIEQNKVYR-AKIEGPP----SAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLF 100 (310)
T ss_pred cceEEEEEeccCceehhhhhhhheEE-EEEecCc----ceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeecc
Confidence 45566666777888889887765432 2222211 111111122222223 33333333445663 2222333311
Q ss_pred ------cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecC--------CCcEEEEEEcCCCCEEE-EEeCC
Q 013184 277 ------FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGH--------LDFSFASAWHPDGRIFA-TGNQD 341 (448)
Q Consensus 277 ------~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h--------~~~v~~~~~~p~g~~l~-s~~~d 341 (448)
.....+.-..+|+|++++ |...-.-..+....+..-.-+.+| -+-...++|+.+.+.+. +-+.+
T Consensus 101 ev~~d~kknR~NDgkvdP~Gryy~-GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln 179 (310)
T KOG4499|consen 101 EVQPDRKKNRLNDGKVDPDGRYYG-GTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLN 179 (310)
T ss_pred ccCchHHhcccccCccCCCCceee-eeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCc
Confidence 234566777899999844 322111112222222222222222 23345788988776554 44556
Q ss_pred CcEEEEEccCC------CcceEEEccC---CC-CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEE
Q 013184 342 KTCRVWDVRNL------SKSVAVLKGN---LG-AIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGM 411 (448)
Q Consensus 342 ~~i~iwd~~~~------~~~~~~~~~~---~~-~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~ 411 (448)
-+|.-||..-. .+.+..++.. .. ..-.++...+|...++.-..++|...|..+|+.+..+.-....|+++
T Consensus 180 ~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsc 259 (310)
T KOG4499|consen 180 YEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSC 259 (310)
T ss_pred eEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEE
Confidence 67777884321 1222222221 11 11234455677777777778899999999999998887778889999
Q ss_pred EEcc-CCCeEEEE
Q 013184 412 TFSP-DTEALFIG 423 (448)
Q Consensus 412 ~fsp-dg~~L~~~ 423 (448)
||-- +=..|++.
T Consensus 260 cFgGkn~d~~yvT 272 (310)
T KOG4499|consen 260 CFGGKNLDILYVT 272 (310)
T ss_pred EecCCCccEEEEE
Confidence 9963 22344443
No 397
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.47 E-value=0.012 Score=38.12 Aligned_cols=36 Identities=17% Similarity=0.208 Sum_probs=31.2
Q ss_pred ecCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCce
Q 013184 276 SFPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKA 312 (448)
Q Consensus 276 ~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~ 312 (448)
..+..|.+++|+|...+||++..+|.|.++.+ +++.
T Consensus 9 ~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 9 NLPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 35667999999999999999999999999988 5554
No 398
>PHA03098 kelch-like protein; Provisional
Probab=96.37 E-value=0.18 Score=51.88 Aligned_cols=191 Identities=12% Similarity=0.097 Sum_probs=92.3
Q ss_pred EEEEecCCEEEEEeCCC------eEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCC-----CcEEE
Q 013184 195 STLAVRDNLLIAGGFQG------ELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNND-----CGVRD 263 (448)
Q Consensus 195 ~~l~~~~~~lvsg~~dg------~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d-----g~v~i 263 (448)
.++..++.+++.||.++ .+.+++..+........+... .....++. - ++.+++.|+.+ ..+..
T Consensus 289 ~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~-R~~~~~~~----~-~~~lyv~GG~~~~~~~~~v~~ 362 (534)
T PHA03098 289 GSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYP-RKNPGVTV----F-NNRIYVIGGIYNSISLNTVES 362 (534)
T ss_pred eEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcc-cccceEEE----E-CCEEEEEeCCCCCEecceEEE
Confidence 34455888888888654 456677665543221111111 11111221 1 34466777654 34778
Q ss_pred EecCCceEEEEee--cCCCeeEEEECCCCCEEEEEecC------CcEEEEECCCCceeE--eeecCCCcEEEEEEcCCCC
Q 013184 264 FDMERFQLSKHFS--FPWPVNHTSLSPDGKLLVIVGDN------PEGILVDSQTGKAIM--PLCGHLDFSFASAWHPDGR 333 (448)
Q Consensus 264 wd~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~~~~~d------~~i~i~d~~~~~~~~--~l~~h~~~v~~~~~~p~g~ 333 (448)
||..+.+....-. .+..-.+++ .-++++.+.||.. ..+..||+.+++-.. .+....... +++ .-++.
T Consensus 363 yd~~~~~W~~~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~~-~~~~~ 439 (534)
T PHA03098 363 WKPGESKWREEPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-CAI-YHDGK 439 (534)
T ss_pred EcCCCCceeeCCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-eEE-EECCE
Confidence 8887766543322 111111222 2256667777632 357889987765322 111111111 122 22566
Q ss_pred EEEEEeCC--------CcEEEEEccCCC-cceEEEccCCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCc
Q 013184 334 IFATGNQD--------KTCRVWDVRNLS-KSVAVLKGNLGAIRSIRFTSDGNFMAMAEPA-----DFVHVYDAKNGF 396 (448)
Q Consensus 334 ~l~s~~~d--------~~i~iwd~~~~~-~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d-----~~v~vwd~~~~~ 396 (448)
.++.|+.. ..+.+||..+.. ..+..+.........+.+ +++.++.|+.+ +.|.+||..+..
T Consensus 440 iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 440 IYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred EEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 66666543 237888876411 111111111111112222 56777777654 468888877653
No 399
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.27 E-value=0.071 Score=56.73 Aligned_cols=144 Identities=15% Similarity=0.125 Sum_probs=95.8
Q ss_pred CCCeeEEEECCCCCEEEEEecCC--cEEEEECCCCce-----eEeeec------CCCcEEEEEEcCCCC-EEEEEeCCCc
Q 013184 278 PWPVNHTSLSPDGKLLVIVGDNP--EGILVDSQTGKA-----IMPLCG------HLDFSFASAWHPDGR-IFATGNQDKT 343 (448)
Q Consensus 278 ~~~v~~~~~sp~~~~l~~~~~d~--~i~i~d~~~~~~-----~~~l~~------h~~~v~~~~~~p~g~-~l~s~~~d~~ 343 (448)
..++..+...+|+...++..... .|..||+++-.. ...|.. ......++.|+|.-. ..+....|+.
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 34567777778877766665443 678889865321 111222 223456788998543 5677778999
Q ss_pred EEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeec----CcCceEEEEEccCCCe
Q 013184 344 CRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEID----FFGEISGMTFSPDTEA 419 (448)
Q Consensus 344 i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~----~~~~v~~~~fspdg~~ 419 (448)
|++..+......+..+. -....++++|+|.|+.++.|-..|++.-|-. +++....+.. ....|.+|+|-..-.+
T Consensus 180 l~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t~ef 257 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLSTQEF 257 (1405)
T ss_pred hhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEecceeE
Confidence 99988865344444433 3456899999999999999999999988874 3443333322 2367999999877777
Q ss_pred EEEE
Q 013184 420 LFIG 423 (448)
Q Consensus 420 L~~~ 423 (448)
|++-
T Consensus 258 lvvy 261 (1405)
T KOG3630|consen 258 LVVY 261 (1405)
T ss_pred EEEe
Confidence 6643
No 400
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.23 E-value=0.3 Score=44.59 Aligned_cols=157 Identities=14% Similarity=0.221 Sum_probs=103.7
Q ss_pred CCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeee--cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcc
Q 013184 278 PWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLC--GHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKS 355 (448)
Q Consensus 278 ~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~--~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~ 355 (448)
...+.++.|+|+.+.|++....+.-.++=...|+.+.++. +.. ..-.+.|..+|+++++--.++.+.++-+......
T Consensus 85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~-DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~ 163 (316)
T COG3204 85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFS-DPETIEYIGGNQFVIVDERDRALYLFTVDADTTV 163 (316)
T ss_pred cccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccC-ChhHeEEecCCEEEEEehhcceEEEEEEcCCccE
Confidence 3448999999999999999888888888778899888764 322 2346888888888888888888888877542211
Q ss_pred e------EEE---ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCcee---eeeecC-------cCceEEEEEccC
Q 013184 356 V------AVL---KGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEK---EQEIDF-------FGEISGMTFSPD 416 (448)
Q Consensus 356 ~------~~~---~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~---~~~~~~-------~~~v~~~~fspd 416 (448)
+ ..+ .......-.++|.|..+.|..+-..+-+.||.+..+... .....+ -..|+++.|.+.
T Consensus 164 ~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~ 243 (316)
T COG3204 164 ISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAI 243 (316)
T ss_pred EeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCC
Confidence 1 111 111445678999999888888877777777776543211 111111 134788889876
Q ss_pred CCeEEEEEecCCcceEEEEec
Q 013184 417 TEALFIGVWDRTYGSLLQYNR 437 (448)
Q Consensus 417 g~~L~~~~~D~~~~~ll~~~~ 437 (448)
...|++-|.+. +.+++..+
T Consensus 244 ~~~LLVLS~ES--r~l~Evd~ 262 (316)
T COG3204 244 TNSLLVLSDES--RRLLEVDL 262 (316)
T ss_pred CCcEEEEecCC--ceEEEEec
Confidence 55555554432 44444443
No 401
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.18 E-value=1 Score=41.31 Aligned_cols=141 Identities=17% Similarity=0.085 Sum_probs=84.3
Q ss_pred CCCCCeeEEEEeCCCcEEEEecCCceEEEEeecCCCeeEEEECCCCCEEEEEecCCcEEEEE-CCCCceeE-eeecC--C
Q 013184 245 SPSGGIHFMASNNDCGVRDFDMERFQLSKHFSFPWPVNHTSLSPDGKLLVIVGDNPEGILVD-SQTGKAIM-PLCGH--L 320 (448)
Q Consensus 245 ~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d-~~~~~~~~-~l~~h--~ 320 (448)
++++....++...++.-.+|-...+...........+...+|++++...++...+...+++. ..++.... .+... .
T Consensus 32 S~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~ 111 (253)
T PF10647_consen 32 SPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLR 111 (253)
T ss_pred CCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEecccccC
Confidence 88887555555333333344333333333332344788889999988877777676667663 33333221 12211 1
Q ss_pred CcEEEEEEcCCCCEEEEEe---CCCcEEEEEccCC--C------cceEEEccCCCCeEEEEEcCCCCEEEEEeCCC
Q 013184 321 DFSFASAWHPDGRIFATGN---QDKTCRVWDVRNL--S------KSVAVLKGNLGAIRSIRFTSDGNFMAMAEPAD 385 (448)
Q Consensus 321 ~~v~~~~~~p~g~~l~s~~---~d~~i~iwd~~~~--~------~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~ 385 (448)
..|.++.++|||..+|.-. .++.|.+=-+... + .++.........+..+.|.+++.+++.+...+
T Consensus 112 ~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 112 GRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAG 187 (253)
T ss_pred CceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCCC
Confidence 2899999999999777665 3466666554311 1 12222333456789999999998887776544
No 402
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.18 E-value=0.022 Score=36.94 Aligned_cols=34 Identities=15% Similarity=0.191 Sum_probs=29.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCce
Q 013184 363 LGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFE 397 (448)
Q Consensus 363 ~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~ 397 (448)
...|.+++|+|....||.+..+|.|.||.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 346899999999999999999999999998 5554
No 403
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=96.17 E-value=0.15 Score=52.89 Aligned_cols=174 Identities=11% Similarity=0.042 Sum_probs=102.6
Q ss_pred cccccccceeeeCC-CCeEEEecCCeEEEEecCCCceeE----EEecCCCCCCCC---CCCCCcccCCcceeeEEEEe--
Q 013184 130 ILHFQLRNLVWSTS-KHDVYLMSHFSIVHWSSLSSKRTE----VLDVSGHVAPCE---KHPGNLLEGFTQTQVSTLAV-- 199 (448)
Q Consensus 130 ~~hfq~r~l~~~~~-~~~v~~~~~~~v~~w~~~~~~~~~----~~~~~gh~~p~~---~~~~~~~~~~~~~~i~~l~~-- 199 (448)
+.+++.||-+.|.+ .+.+|++..+.|.+|++..-.... .+.+. ..|.. ........+ ....|.-|.+
T Consensus 34 l~~~gfKNNLtalsq~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~--t~p~~~~~~D~~~s~~p-~PHtIN~i~v~~ 110 (717)
T PF08728_consen 34 LQGLGFKNNLTALSQRNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFD--TKPEFTSTPDRLISTWP-FPHTINFIKVGD 110 (717)
T ss_pred eeccccccceeEEecCCEEEEEECCEEEEEecCCcccccccccccccc--cCccccccccccccCCC-CCceeeEEEecc
Confidence 44556888777777 677778889999999974322211 11111 11111 000111112 3345666655
Q ss_pred --cCCEEEEEeCCCeEEEEEcCCCC---------c-e------eEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcE
Q 013184 200 --RDNLLIAGGFQGELICKYLDQPG---------V-S------FCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGV 261 (448)
Q Consensus 200 --~~~~lvsg~~dg~i~vw~~~~~~---------~-~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v 261 (448)
...+|+++..||.|.+|.+.+-- . . ....+........+.+++... ...++||++++...|
T Consensus 111 lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~-~~~rlIAVSsNs~~V 189 (717)
T PF08728_consen 111 LGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDY-KKSRLIAVSSNSQEV 189 (717)
T ss_pred cCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEec-CcceEEEEecCCceE
Confidence 66889999999999999763100 0 0 001122233445677777522 345588888888888
Q ss_pred EEEecCC--ce--EEEEeecCCCeeEEEECCCC---C---EEEEEecCCcEEEEEC
Q 013184 262 RDFDMER--FQ--LSKHFSFPWPVNHTSLSPDG---K---LLVIVGDNPEGILVDS 307 (448)
Q Consensus 262 ~iwd~~~--~~--~~~~~~~~~~v~~~~~sp~~---~---~l~~~~~d~~i~i~d~ 307 (448)
.||-... .+ ......+...|-+|+|-++. . ++++++-.|.+.+|++
T Consensus 190 TVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 190 TVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 8885433 11 11223366778899997632 2 7778888999998876
No 404
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.11 E-value=1.6 Score=42.91 Aligned_cols=81 Identities=17% Similarity=0.128 Sum_probs=54.7
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCe----EEEEEcCC--------------CCEE-EEE
Q 013184 321 DFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAI----RSIRFTSD--------------GNFM-AMA 381 (448)
Q Consensus 321 ~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v----~~l~~sp~--------------g~~l-~s~ 381 (448)
..+.+++.+|++++.|+...=|.|.++|+.+ ...++.+++...+= ....-... ..+| +-+
T Consensus 308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~-~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIya 386 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDSLGRVLLIDVAR-GIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYA 386 (415)
T ss_pred ceEEEEEECCCCCEEEEEcCCCcEEEEECCC-ChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEe
Confidence 3467899999999999988889999999976 66666666654321 11000000 1233 345
Q ss_pred eCCCeEEEEECCCCceeeeee
Q 013184 382 EPADFVHVYDAKNGFEKEQEI 402 (448)
Q Consensus 382 ~~d~~v~vwd~~~~~~~~~~~ 402 (448)
-.-|.|-||.+++|.++..+.
T Consensus 387 prRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 387 PRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred ccCCeEEEEecCCCCEEEEEE
Confidence 668899999999988776554
No 405
>PHA03098 kelch-like protein; Provisional
Probab=96.02 E-value=0.47 Score=48.80 Aligned_cols=149 Identities=14% Similarity=0.115 Sum_probs=75.4
Q ss_pred EEEEecCCEEEEEeCCC-----eEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCC------CcEEE
Q 013184 195 STLAVRDNLLIAGGFQG-----ELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNND------CGVRD 263 (448)
Q Consensus 195 ~~l~~~~~~lvsg~~dg-----~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d------g~v~i 263 (448)
.+...++.+++.||.++ .+.+|+..+........+....... ++.. -+ +.+++.|+.. ..+..
T Consensus 337 ~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~--~~~~---~~-~~iYv~GG~~~~~~~~~~v~~ 410 (534)
T PHA03098 337 GVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNP--CVVN---VN-NLIYVIGGISKNDELLKTVEC 410 (534)
T ss_pred eEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccc--eEEE---EC-CEEEEECCcCCCCcccceEEE
Confidence 34455888999998763 4667777665543222221111111 1111 13 3466666632 45788
Q ss_pred EecCCceEEEEeecCCCe-eEEEECCCCCEEEEEecC--------CcEEEEECCCCceeEe--eecCCCcEEEEEEcCCC
Q 013184 264 FDMERFQLSKHFSFPWPV-NHTSLSPDGKLLVIVGDN--------PEGILVDSQTGKAIMP--LCGHLDFSFASAWHPDG 332 (448)
Q Consensus 264 wd~~~~~~~~~~~~~~~v-~~~~~sp~~~~l~~~~~d--------~~i~i~d~~~~~~~~~--l~~h~~~v~~~~~~p~g 332 (448)
||+.+.+....-..+.+. .+.+...++++.+.||.+ ..+.+||..+++-... +.........+.+ ++
T Consensus 411 yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~ 488 (534)
T PHA03098 411 FSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NN 488 (534)
T ss_pred EeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CC
Confidence 998876654432211111 111222356666666643 2378889887654321 1111111122222 56
Q ss_pred CEEEEEeCC-----CcEEEEEccC
Q 013184 333 RIFATGNQD-----KTCRVWDVRN 351 (448)
Q Consensus 333 ~~l~s~~~d-----~~i~iwd~~~ 351 (448)
+.++.|+.+ ..+.+||..+
T Consensus 489 ~iyv~GG~~~~~~~~~v~~yd~~~ 512 (534)
T PHA03098 489 KIYVVGGDKYEYYINEIEVYDDKT 512 (534)
T ss_pred EEEEEcCCcCCcccceeEEEeCCC
Confidence 777777654 3577777753
No 406
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.94 E-value=1.5 Score=41.17 Aligned_cols=182 Identities=15% Similarity=0.177 Sum_probs=84.1
Q ss_pred EecCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee-
Q 013184 198 AVRDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS- 276 (448)
Q Consensus 198 ~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~- 276 (448)
+.........+..|.| |.....+..-..... ...+....+ ..+++|. ++++++.-..+.-|+.-......+..
T Consensus 111 ~l~~~~~~l~~~~G~i--y~T~DgG~tW~~~~~-~~~gs~~~~--~r~~dG~-~vavs~~G~~~~s~~~G~~~w~~~~r~ 184 (302)
T PF14870_consen 111 ALGDGSAELAGDRGAI--YRTTDGGKTWQAVVS-ETSGSINDI--TRSSDGR-YVAVSSRGNFYSSWDPGQTTWQPHNRN 184 (302)
T ss_dssp EEETTEEEEEETT--E--EEESSTTSSEEEEE--S----EEEE--EE-TTS--EEEEETTSSEEEEE-TT-SS-EEEE--
T ss_pred EcCCCcEEEEcCCCcE--EEeCCCCCCeeEccc-CCcceeEeE--EECCCCc-EEEEECcccEEEEecCCCccceEEccC
Confidence 3344555555666754 444444433323222 222333333 3467775 55555444444567754322333333
Q ss_pred cCCCeeEEEECCCCCEEEEEecCCcEEEEE-CCCCceeEe----eecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccC
Q 013184 277 FPWPVNHTSLSPDGKLLVIVGDNPEGILVD-SQTGKAIMP----LCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRN 351 (448)
Q Consensus 277 ~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d-~~~~~~~~~----l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~ 351 (448)
....|..+.|+|++.+.+++ ..+.|+.=+ ......... +....-.+..++|.+++...|+|+.. ++ +.....
T Consensus 185 ~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G-~l-~~S~Dg 261 (302)
T PF14870_consen 185 SSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG-TL-LVSTDG 261 (302)
T ss_dssp SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT--E-EEESST
T ss_pred ccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCc-cE-EEeCCC
Confidence 56889999999998776654 777887766 222222111 11122347899999988877766544 32 233332
Q ss_pred CCcceEEEc---cCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 013184 352 LSKSVAVLK---GNLGAIRSIRFTSDGNFMAMAEPADFVHVY 390 (448)
Q Consensus 352 ~~~~~~~~~---~~~~~v~~l~~sp~g~~l~s~~~d~~v~vw 390 (448)
++.-+.-. .-.+.++.+.|.+..+-++. +.+|.|--|
T Consensus 262 -GktW~~~~~~~~~~~n~~~i~f~~~~~gf~l-G~~G~ll~~ 301 (302)
T PF14870_consen 262 -GKTWQKDRVGENVPSNLYRIVFVNPDKGFVL-GQDGVLLRY 301 (302)
T ss_dssp -TSS-EE-GGGTTSSS---EEEEEETTEEEEE--STTEEEEE
T ss_pred -CccceECccccCCCCceEEEEEcCCCceEEE-CCCcEEEEe
Confidence 44433333 22345788888765555555 467765433
No 407
>PRK10115 protease 2; Provisional
Probab=95.91 E-value=1.3 Score=47.05 Aligned_cols=110 Identities=14% Similarity=0.174 Sum_probs=66.7
Q ss_pred eeEEEECCCCCEEEEEecC-----CcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCC------CcEEEEEc
Q 013184 281 VNHTSLSPDGKLLVIVGDN-----PEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQD------KTCRVWDV 349 (448)
Q Consensus 281 v~~~~~sp~~~~l~~~~~d-----~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d------~~i~iwd~ 349 (448)
+..+.++|+|++|+.+.+. -.|++.|+.+|+.+...-.... ..++|++|++.|+....+ ..|..+++
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~l 206 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTI 206 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEEC
Confidence 5677889999988876432 3588899988864322211112 469999999866665432 25677777
Q ss_pred cCCC-cceEEEccCCCCeE-EEEEcCCCCEEEEEeCC---CeEEEEEC
Q 013184 350 RNLS-KSVAVLKGNLGAIR-SIRFTSDGNFMAMAEPA---DFVHVYDA 392 (448)
Q Consensus 350 ~~~~-~~~~~~~~~~~~v~-~l~~sp~g~~l~s~~~d---~~v~vwd~ 392 (448)
.+.. .-...+........ .+..+.++++++..+.. +.+.+++.
T Consensus 207 gt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 207 GTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred CCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 6531 22333443333333 33345588887765443 47888884
No 408
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.66 E-value=0.52 Score=48.48 Aligned_cols=97 Identities=20% Similarity=0.229 Sum_probs=67.4
Q ss_pred eEEEEeCCCcEEEEecCCceEEEEeec--CCCeeEEEEC--CCCCEEEEEecCCcEEEEECC-----C----CceeEee-
Q 013184 251 HFMASNNDCGVRDFDMERFQLSKHFSF--PWPVNHTSLS--PDGKLLVIVGDNPEGILVDSQ-----T----GKAIMPL- 316 (448)
Q Consensus 251 ~l~s~s~dg~v~iwd~~~~~~~~~~~~--~~~v~~~~~s--p~~~~l~~~~~d~~i~i~d~~-----~----~~~~~~l- 316 (448)
..++-+....+.|||...+.+.....+ ...|..+.|. |+|+.+++.|-.+.|.++--. . ...+..+
T Consensus 43 ~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~ 122 (631)
T PF12234_consen 43 IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKID 122 (631)
T ss_pred EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEE
Confidence 344444456799999998886655444 8899999995 589999999999999998542 1 1223322
Q ss_pred -ecCC-CcEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 013184 317 -CGHL-DFSFASAWHPDGRIFATGNQDKTCRVWDV 349 (448)
Q Consensus 317 -~~h~-~~v~~~~~~p~g~~l~s~~~d~~i~iwd~ 349 (448)
..|+ .+|....|.++|.+++.++ +.+.|+|-
T Consensus 123 i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 123 ISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred eecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 3344 6788999999997665443 35777764
No 409
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.63 E-value=1.7 Score=39.57 Aligned_cols=178 Identities=15% Similarity=0.158 Sum_probs=109.3
Q ss_pred EEEEe--cCCEEEEEeCCC--eEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCce
Q 013184 195 STLAV--RDNLLIAGGFQG--ELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQ 270 (448)
Q Consensus 195 ~~l~~--~~~~lvsg~~dg--~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~ 270 (448)
-.|.+ ++.++-+.|.-| .|+.+++.++.......+. ..-.-..+.+. +..+..-.-.++...+||..+.+
T Consensus 48 QGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~--~~~FgEGit~~----~d~l~qLTWk~~~~f~yd~~tl~ 121 (264)
T PF05096_consen 48 QGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLP--PRYFGEGITIL----GDKLYQLTWKEGTGFVYDPNTLK 121 (264)
T ss_dssp EEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-T--TT--EEEEEEE----TTEEEEEESSSSEEEEEETTTTE
T ss_pred ccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECC--ccccceeEEEE----CCEEEEEEecCCeEEEEccccce
Confidence 45555 567778888777 7888888887654333332 22233344442 34466667778999999999999
Q ss_pred EEEEeecCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecC-----CCcEEEEEEcCCCCEEEEEeCCCcEE
Q 013184 271 LSKHFSFPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGH-----LDFSFASAWHPDGRIFATGNQDKTCR 345 (448)
Q Consensus 271 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h-----~~~v~~~~~~p~g~~l~s~~~d~~i~ 345 (448)
.+..+..++.=+.++ .+++.|+.......+.++|..+.+.+..+.-. -..++-+.|. +|...|=.-+...|.
T Consensus 122 ~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~ 198 (264)
T PF05096_consen 122 KIGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIV 198 (264)
T ss_dssp EEEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEE
T ss_pred EEEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEE
Confidence 999999776667777 45777877777789999999888776665432 1335556665 565555555555666
Q ss_pred EEEccCCCcceEEEc---------------cCCCCeEEEEEcCCCCEEEEEe
Q 013184 346 VWDVRNLSKSVAVLK---------------GNLGAIRSIRFTSDGNFMAMAE 382 (448)
Q Consensus 346 iwd~~~~~~~~~~~~---------------~~~~~v~~l~~sp~g~~l~s~~ 382 (448)
..|..+ +..+..+. ....-.+.++|.|.+..|...+
T Consensus 199 ~Idp~t-G~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 199 RIDPET-GKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEETTT--BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEeCCC-CeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 677755 55444431 0124578999998776555444
No 410
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.58 E-value=0.5 Score=47.24 Aligned_cols=138 Identities=18% Similarity=0.291 Sum_probs=85.6
Q ss_pred CCeeEEEECCCCCEEEEEe---cCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCC----CEEEEEeCCCcEEEEEccC
Q 013184 279 WPVNHTSLSPDGKLLVIVG---DNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDG----RIFATGNQDKTCRVWDVRN 351 (448)
Q Consensus 279 ~~v~~~~~sp~~~~l~~~~---~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g----~~l~s~~~d~~i~iwd~~~ 351 (448)
.++..++|. ||+.++... .+|.+++=| .+.+ |.-..|..+.|.|-+ ..++..-..+.|.+|.+..
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~vi----GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVI----GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCC---ccEe----eccceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 567888887 566554332 333443322 1223 334568899999943 2455556677899999852
Q ss_pred C----CcceEEEccCCC---C--eEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-eeeeeecCcCceEEEEEccCCCeEE
Q 013184 352 L----SKSVAVLKGNLG---A--IRSIRFTSDGNFMAMAEPADFVHVYDAKNGF-EKEQEIDFFGEISGMTFSPDTEALF 421 (448)
Q Consensus 352 ~----~~~~~~~~~~~~---~--v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~-~~~~~~~~~~~v~~~~fspdg~~L~ 421 (448)
. ++.+.....+.. + -..+.|+|....|++-...+.-.+++++... .++.-....|.|.+.+|.+||+.|+
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLV 171 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLV 171 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEE
Confidence 1 122222222221 1 2456899999999888777654566665432 3333345678999999999999999
Q ss_pred EEE
Q 013184 422 IGV 424 (448)
Q Consensus 422 ~~~ 424 (448)
++.
T Consensus 172 VAv 174 (671)
T PF15390_consen 172 VAV 174 (671)
T ss_pred EEe
Confidence 884
No 411
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.55 E-value=0.044 Score=47.94 Aligned_cols=141 Identities=12% Similarity=0.087 Sum_probs=85.1
Q ss_pred EEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCc-eEEEEee-cCCC
Q 013184 203 LLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERF-QLSKHFS-FPWP 280 (448)
Q Consensus 203 ~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~-~~~~ 280 (448)
.|..-+.+|.|+-+++....... ........+ +..+.....+++|+.+|.|.+|..... .....+. ...+
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~-rse~~~~e~-------~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~ 103 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESC-RSERFIDEG-------QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEES 103 (238)
T ss_pred hhccccCCcccccchhhhhhhhh-hhhhhhhcc-------eeecccCceEEeecccceEEEecCCccchHHHhhhccccc
Confidence 44555677887777765433221 111111111 112333447999999999999987621 1111111 1222
Q ss_pred eeEEEE-CCCCCEEEEEecCCcEEEEECCCCceeEeeecCC-CcEEEEEEcCCCCEEEEE--eCCCcEEEEEccC
Q 013184 281 VNHTSL-SPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHL-DFSFASAWHPDGRIFATG--NQDKTCRVWDVRN 351 (448)
Q Consensus 281 v~~~~~-sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~-~~v~~~~~~p~g~~l~s~--~~d~~i~iwd~~~ 351 (448)
|.++-- -.++.+..+++.++.|+.|++.-++.+.....|. .++.....+..++.++++ +.|..++.|++..
T Consensus 104 i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 104 IDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 333222 2255688899999999999999888877766676 555555555566777777 7777888888753
No 412
>PHA02790 Kelch-like protein; Provisional
Probab=95.52 E-value=0.85 Score=46.17 Aligned_cols=143 Identities=9% Similarity=0.030 Sum_probs=70.9
Q ss_pred EEEecCCEEEEEeCCC--eEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCC---cEEEEecCCce
Q 013184 196 TLAVRDNLLIAGGFQG--ELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDC---GVRDFDMERFQ 270 (448)
Q Consensus 196 ~l~~~~~~lvsg~~dg--~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg---~v~iwd~~~~~ 270 (448)
....++.+.+.||.++ .+..|+..+........+....... .++. -+ +.+.+.|+.++ .+..||.++.+
T Consensus 314 ~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~-~~~~----~~-g~IYviGG~~~~~~~ve~ydp~~~~ 387 (480)
T PHA02790 314 GVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNP-AVAS----IN-NVIYVIGGHSETDTTTEYLLPNHDQ 387 (480)
T ss_pred EEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCccc-EEEE----EC-CEEEEecCcCCCCccEEEEeCCCCE
Confidence 3445888889998754 4677776555433222221111111 1121 13 34667766543 47788888766
Q ss_pred EEEEee--cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeE--eeecCCCcEEEEEEcCCCCEEEEEeCC-----
Q 013184 271 LSKHFS--FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIM--PLCGHLDFSFASAWHPDGRIFATGNQD----- 341 (448)
Q Consensus 271 ~~~~~~--~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~--~l~~h~~~v~~~~~~p~g~~l~s~~~d----- 341 (448)
....-. .+..-.+++ .-++++.+.|+ .+.+||..+++-.. .+.........+.. +|+..+.|+.+
T Consensus 388 W~~~~~m~~~r~~~~~~-~~~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~r~~~~~~v~--~~~IYviGG~~~~~~~ 461 (480)
T PHA02790 388 WQFGPSTYYPHYKSCAL-VFGRRLFLVGR---NAEFYCESSNTWTLIDDPIYPRDNPELIIV--DNKLLLIGGFYRGSYI 461 (480)
T ss_pred EEeCCCCCCccccceEE-EECCEEEEECC---ceEEecCCCCcEeEcCCCCCCccccEEEEE--CCEEEEECCcCCCccc
Confidence 544322 111111222 22455555553 46788887765432 22211222222222 67777777754
Q ss_pred CcEEEEEcc
Q 013184 342 KTCRVWDVR 350 (448)
Q Consensus 342 ~~i~iwd~~ 350 (448)
.++..||..
T Consensus 462 ~~ve~Yd~~ 470 (480)
T PHA02790 462 DTIEVYNNR 470 (480)
T ss_pred ceEEEEECC
Confidence 245566654
No 413
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.17 E-value=1.4 Score=42.81 Aligned_cols=141 Identities=13% Similarity=0.173 Sum_probs=72.5
Q ss_pred ceeeEEEEeCCCCCeeEEEEe-----------CCC-cEEEEecCC--ceE--EEEee-cCCCeeEEEECCCCCEEEEEec
Q 013184 236 ITNAVEIYNSPSGGIHFMASN-----------NDC-GVRDFDMER--FQL--SKHFS-FPWPVNHTSLSPDGKLLVIVGD 298 (448)
Q Consensus 236 ~~~~v~~~~~~~~~~~l~s~s-----------~dg-~v~iwd~~~--~~~--~~~~~-~~~~v~~~~~sp~~~~l~~~~~ 298 (448)
+.+.+.+.+.++|. ++++.. ..+ .|.+++-.. ++. ...+. .-.....+++.++| |+++..
T Consensus 13 ~~~P~~ia~d~~G~-l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~ 89 (367)
T TIGR02604 13 LRNPIAVCFDERGR-LWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATP 89 (367)
T ss_pred cCCCceeeECCCCC-EEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCC
Confidence 34445555588876 333321 223 676665432 332 22333 23345789999888 444444
Q ss_pred CCcEEEE-ECCC-----Cce--e-Eeeec----CCCcEEEEEEcCCCCEEEEEeCC-------------------CcEEE
Q 013184 299 NPEGILV-DSQT-----GKA--I-MPLCG----HLDFSFASAWHPDGRIFATGNQD-------------------KTCRV 346 (448)
Q Consensus 299 d~~i~i~-d~~~-----~~~--~-~~l~~----h~~~v~~~~~~p~g~~l~s~~~d-------------------~~i~i 346 (448)
. .|..+ |... ++. + ..+.. +......++|.|||.+.++-+.. +.|.-
T Consensus 90 ~-~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r 168 (367)
T TIGR02604 90 P-DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFR 168 (367)
T ss_pred C-eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEE
Confidence 4 34434 4421 121 1 11222 13446789999999865544411 22333
Q ss_pred EEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEe
Q 013184 347 WDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAE 382 (448)
Q Consensus 347 wd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~ 382 (448)
++.. +..+..+.........++|+|+|+++++-.
T Consensus 169 ~~pd--g~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 169 YNPD--GGKLRVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred EecC--CCeEEEEecCcCCCccceECCCCCEEEEcc
Confidence 3433 223333332223356899999998877644
No 414
>PHA02790 Kelch-like protein; Provisional
Probab=95.15 E-value=0.92 Score=45.93 Aligned_cols=184 Identities=12% Similarity=0.041 Sum_probs=88.2
Q ss_pred ecCCEEEEEeCCC-----eEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCC--CcEEEEecCCceE
Q 013184 199 VRDNLLIAGGFQG-----ELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNND--CGVRDFDMERFQL 271 (448)
Q Consensus 199 ~~~~~lvsg~~dg-----~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d--g~v~iwd~~~~~~ 271 (448)
.++.++++||.++ .+..|+..+........+.... .....+. - ++.+.+.|+.+ ..+..||..+++.
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r-~~~~~v~----~-~~~iYviGG~~~~~sve~ydp~~n~W 343 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPR-LYASGVP----A-NNKLYVVGGLPNPTSVERWFHGDAAW 343 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchh-hcceEEE----E-CCEEEEECCcCCCCceEEEECCCCeE
Confidence 4677778888654 4556776655432211111111 1111121 2 34466667653 4578888877655
Q ss_pred EEEeecCCCeeE-EEECCCCCEEEEEecCC---cEEEEECCCCceeE--eeecCCCcEEEEEEcCCCCEEEEEeCCCcEE
Q 013184 272 SKHFSFPWPVNH-TSLSPDGKLLVIVGDNP---EGILVDSQTGKAIM--PLCGHLDFSFASAWHPDGRIFATGNQDKTCR 345 (448)
Q Consensus 272 ~~~~~~~~~v~~-~~~sp~~~~l~~~~~d~---~i~i~d~~~~~~~~--~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~ 345 (448)
...-..+.+... ....-+|++.++||.++ .+..||..+.+-.. .+.........++ -+|++.+.|+ .+.
T Consensus 344 ~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~--~~~~IYv~GG---~~e 418 (480)
T PHA02790 344 VNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALV--FGRRLFLVGR---NAE 418 (480)
T ss_pred EECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEE--ECCEEEEECC---ceE
Confidence 433222222211 11222577777777543 46788887765432 1111111112222 2566666663 577
Q ss_pred EEEccCCC-cceEEEccCCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEECCCC
Q 013184 346 VWDVRNLS-KSVAVLKGNLGAIRSIRFTSDGNFMAMAEPA-----DFVHVYDAKNG 395 (448)
Q Consensus 346 iwd~~~~~-~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d-----~~v~vwd~~~~ 395 (448)
+||..+.. ..+..+.........+. -+|+..+.|+.+ ..|.+||..++
T Consensus 419 ~ydp~~~~W~~~~~m~~~r~~~~~~v--~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 419 FYCESSNTWTLIDDPIYPRDNPELII--VDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred EecCCCCcEeEcCCCCCCccccEEEE--ECCEEEEECCcCCCcccceEEEEECCCC
Confidence 88876411 11111211111222222 256777777643 35667776654
No 415
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.14 E-value=1.2 Score=40.72 Aligned_cols=136 Identities=18% Similarity=0.132 Sum_probs=85.9
Q ss_pred CCCCCeeEEEEeCCCc-EEEEecCCceEEEEee---cCCCeeEEEECCCCCEEEEEec-----CCcEEEEECCCC-ceeE
Q 013184 245 SPSGGIHFMASNNDCG-VRDFDMERFQLSKHFS---FPWPVNHTSLSPDGKLLVIVGD-----NPEGILVDSQTG-KAIM 314 (448)
Q Consensus 245 ~~~~~~~l~s~s~dg~-v~iwd~~~~~~~~~~~---~~~~v~~~~~sp~~~~l~~~~~-----d~~i~i~d~~~~-~~~~ 314 (448)
+|.-.+-++.+-.-|+ ..++|..+.+...++. ...---.=.|||+|.+|+..-. -|.|-|||.+.+ +.+.
T Consensus 76 ~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvg 155 (366)
T COG3490 76 HPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVG 155 (366)
T ss_pred CCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccceec
Confidence 5555545555555444 4578888776555443 1111224469999999987643 367889998754 3466
Q ss_pred eeecCCCcEEEEEEcCCCCEEEEEeCC------------------CcEEEEEccCCCcceE--EEc--cCCCCeEEEEEc
Q 013184 315 PLCGHLDFSFASAWHPDGRIFATGNQD------------------KTCRVWDVRNLSKSVA--VLK--GNLGAIRSIRFT 372 (448)
Q Consensus 315 ~l~~h~~~v~~~~~~p~g~~l~s~~~d------------------~~i~iwd~~~~~~~~~--~~~--~~~~~v~~l~~s 372 (448)
.+..|.-....+.|.+||+.++.++.. -++.+.|..+ +..+. ++. .+.-.|+.+...
T Consensus 156 E~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~at-G~liekh~Lp~~l~~lSiRHld~g 234 (366)
T COG3490 156 EFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAAT-GNLIEKHTLPASLRQLSIRHLDIG 234 (366)
T ss_pred ccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccc-cchhhhccCchhhhhcceeeeeeC
Confidence 777888778889999999999887531 1234444333 33322 222 234468888888
Q ss_pred CCCCEEEEE
Q 013184 373 SDGNFMAMA 381 (448)
Q Consensus 373 p~g~~l~s~ 381 (448)
+||+.++.+
T Consensus 235 ~dgtvwfgc 243 (366)
T COG3490 235 RDGTVWFGC 243 (366)
T ss_pred CCCcEEEEE
Confidence 888766544
No 416
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.00 E-value=0.87 Score=40.25 Aligned_cols=114 Identities=15% Similarity=0.149 Sum_probs=77.6
Q ss_pred CCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEe--cCCceEEE-----Eeec----C
Q 013184 210 QGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFD--MERFQLSK-----HFSF----P 278 (448)
Q Consensus 210 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd--~~~~~~~~-----~~~~----~ 278 (448)
.|.++.|-....- ......-.+.+.++| +.+.+...+.-+.+-.|.-|| +.+|.+.. .++. .
T Consensus 138 ~g~Ly~~~~~h~v-----~~i~~~v~IsNgl~W--d~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e 210 (310)
T KOG4499|consen 138 GGELYSWLAGHQV-----ELIWNCVGISNGLAW--DSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFE 210 (310)
T ss_pred ccEEEEeccCCCc-----eeeehhccCCccccc--cccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcC
Confidence 4677777665432 222234456677777 555565667777788887776 66665321 1111 1
Q ss_pred -CCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcC
Q 013184 279 -WPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHP 330 (448)
Q Consensus 279 -~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p 330 (448)
-..-.+++..+|++.+++-..++|...|..+|+.+..+.-....+++++|--
T Consensus 211 ~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 211 SLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred CCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 1123455566888888888899999999999999999988899999999963
No 417
>PLN02153 epithiospecifier protein
Probab=95.00 E-value=3.6 Score=39.56 Aligned_cols=113 Identities=16% Similarity=0.125 Sum_probs=55.5
Q ss_pred EEEEecCCEEEEEeCCC-------eEEEEEcCCCCceeEEEeecCCC-C--ceeeEEEEeCCCCCeeEEEEeCC-----C
Q 013184 195 STLAVRDNLLIAGGFQG-------ELICKYLDQPGVSFCSRTTYDEN-A--ITNAVEIYNSPSGGIHFMASNND-----C 259 (448)
Q Consensus 195 ~~l~~~~~~lvsg~~dg-------~i~vw~~~~~~~~~~~~~~~~~~-~--~~~~v~~~~~~~~~~~l~s~s~d-----g 259 (448)
.+...++.+++.|+.+. .+.++|+.+.............. . ...++.+ ++.+++.|+.+ .
T Consensus 27 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~-----~~~iyv~GG~~~~~~~~ 101 (341)
T PLN02153 27 GIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV-----GTKLYIFGGRDEKREFS 101 (341)
T ss_pred eEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE-----CCEEEEECCCCCCCccC
Confidence 34445778888888642 46677766654321111100000 0 0111211 34466666643 3
Q ss_pred cEEEEecCCceEEEEeec-----CCC-eeEEEECCCCCEEEEEecC-----------CcEEEEECCCCce
Q 013184 260 GVRDFDMERFQLSKHFSF-----PWP-VNHTSLSPDGKLLVIVGDN-----------PEGILVDSQTGKA 312 (448)
Q Consensus 260 ~v~iwd~~~~~~~~~~~~-----~~~-v~~~~~sp~~~~l~~~~~d-----------~~i~i~d~~~~~~ 312 (448)
.+.+||+.+.+....-.. +.+ ....+..-++++++.|+.+ ..+.+||..+.+-
T Consensus 102 ~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W 171 (341)
T PLN02153 102 DFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKW 171 (341)
T ss_pred cEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeE
Confidence 578889887665432111 111 1122222356666777643 2477888877653
No 418
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=94.98 E-value=3.2 Score=38.84 Aligned_cols=163 Identities=20% Similarity=0.252 Sum_probs=94.0
Q ss_pred cEEEEecCCceEEEEeecC-------CCeeEEEECCCC----CEEEEEe--cCCcEEEEECCCCceeEeeec--------
Q 013184 260 GVRDFDMERFQLSKHFSFP-------WPVNHTSLSPDG----KLLVIVG--DNPEGILVDSQTGKAIMPLCG-------- 318 (448)
Q Consensus 260 ~v~iwd~~~~~~~~~~~~~-------~~v~~~~~sp~~----~~l~~~~--~d~~i~i~d~~~~~~~~~l~~-------- 318 (448)
+|.+||+.++++++.+..+ ..++.+.+.... ..+|-.+ ..+.+.++|+.+++..+.+..
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 5778899999988887633 346667776521 1333333 345899999998875544332
Q ss_pred -----------CCCcEEEEEEcC---CCCEEEEEeCCCcEEEEEccC-----CC--------cceEEEccCCCCeEEEEE
Q 013184 319 -----------HLDFSFASAWHP---DGRIFATGNQDKTCRVWDVRN-----LS--------KSVAVLKGNLGAIRSIRF 371 (448)
Q Consensus 319 -----------h~~~v~~~~~~p---~g~~l~s~~~d~~i~iwd~~~-----~~--------~~~~~~~~~~~~v~~l~~ 371 (448)
..+.+..++.+| +|+.|.-+...+ -++|.+.+ .. ..+..+-...+....+++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~ 193 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAI 193 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccccCCCCceEEE
Confidence 123366777766 667777666554 24444321 00 122222211235567889
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCcee---eee-ec-C-cCceEEEEEcc--CCCeEEEE
Q 013184 372 TSDGNFMAMAEPADFVHVYDAKNGFEK---EQE-ID-F-FGEISGMTFSP--DTEALFIG 423 (448)
Q Consensus 372 sp~g~~l~s~~~d~~v~vwd~~~~~~~---~~~-~~-~-~~~v~~~~fsp--dg~~L~~~ 423 (448)
+++|....+--..+.|..|+..+.... ..+ .. . -..+.++++.+ +|..-+.+
T Consensus 194 D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 194 DPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp ETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred CCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 999988888888899999998763211 111 11 2 35789999999 77655544
No 419
>PRK10115 protease 2; Provisional
Probab=94.86 E-value=6.4 Score=41.80 Aligned_cols=189 Identities=13% Similarity=0.005 Sum_probs=96.8
Q ss_pred eCCCCCeeEEEEeCCC----cEEEEecCCceEEEEeecCCCeeEEEECCCCCEEEEEecC------CcEEEEECCCC--c
Q 013184 244 NSPSGGIHFMASNNDC----GVRDFDMERFQLSKHFSFPWPVNHTSLSPDGKLLVIVGDN------PEGILVDSQTG--K 311 (448)
Q Consensus 244 ~~~~~~~~l~s~s~dg----~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d------~~i~i~d~~~~--~ 311 (448)
++|+|..++++...+| .|++.|+.+++.+... ..+.-..++|+++++.|+....+ ..|+.+++.++ +
T Consensus 134 ~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~-i~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~ 212 (686)
T PRK10115 134 ITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPEL-LDNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQ 212 (686)
T ss_pred ECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcc-ccCcceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhH
Confidence 3788875555544433 4888899887633211 11112469999999877766542 36778888887 3
Q ss_pred eeEeeecCCCcEE-EEEEcCCCCEEEEEeC---CCcEEEEEccCC-CcceEEEccCCCCeEEEEEcCCCCEEEEEeCC-C
Q 013184 312 AIMPLCGHLDFSF-ASAWHPDGRIFATGNQ---DKTCRVWDVRNL-SKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPA-D 385 (448)
Q Consensus 312 ~~~~l~~h~~~v~-~~~~~p~g~~l~s~~~---d~~i~iwd~~~~-~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d-~ 385 (448)
....+........ .+..+.++++++..+. ++.+.+++.... ......+....+....+. +..+.+.+....+ .
T Consensus 213 d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly~~tn~~~~ 291 (686)
T PRK10115 213 DELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRFYLRSNRHGK 291 (686)
T ss_pred CeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEEEEEEcCCCC
Confidence 3334443333333 2333448886665543 356888885331 222222222222222222 3233333332221 2
Q ss_pred --eEEEEECCCCceeeeeecC-c-CceEEEEEccCCCeEEEEEecCCcceEEEEe
Q 013184 386 --FVHVYDAKNGFEKEQEIDF-F-GEISGMTFSPDTEALFIGVWDRTYGSLLQYN 436 (448)
Q Consensus 386 --~v~vwd~~~~~~~~~~~~~-~-~~v~~~~fspdg~~L~~~~~D~~~~~ll~~~ 436 (448)
.|...++........+..+ . ..|.++.+. ++.|+....+.....+..+.
T Consensus 292 ~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~~~g~~~l~~~~ 344 (686)
T PRK10115 292 NFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEERQRGLTSLRQIN 344 (686)
T ss_pred CceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEEeCCEEEEEEEc
Confidence 3444454421222334444 2 357778876 55677666555555555544
No 420
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.79 E-value=0.8 Score=48.37 Aligned_cols=26 Identities=38% Similarity=0.648 Sum_probs=20.4
Q ss_pred CCeeEEEECCCCCEEEEEecCCcEEE
Q 013184 279 WPVNHTSLSPDGKLLVIVGDNPEGIL 304 (448)
Q Consensus 279 ~~v~~~~~sp~~~~l~~~~~d~~i~i 304 (448)
-.|..+.++|+|++++..|..+.+.+
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~ 110 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVL 110 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEE
Confidence 35888999999999999888764433
No 421
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.77 E-value=1.8 Score=44.65 Aligned_cols=111 Identities=16% Similarity=0.177 Sum_probs=73.6
Q ss_pred CeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeee-cCCCcEEEEEEc--CCCCEEEEEeCCCcEEEEEcc-----C
Q 013184 280 PVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLC-GHLDFSFASAWH--PDGRIFATGNQDKTCRVWDVR-----N 351 (448)
Q Consensus 280 ~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~-~h~~~v~~~~~~--p~g~~l~s~~~d~~i~iwd~~-----~ 351 (448)
.+.-+.-+.-++..++-+....+.|||.+.+.....-. ...+.|..+.|. |+|+.+++.+-...|.+|--. +
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN 110 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence 34445555556655565566789999999887544322 356889999886 588888888888888888531 1
Q ss_pred CC---cceEEE--ccCC-CCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 013184 352 LS---KSVAVL--KGNL-GAIRSIRFTSDGNFMAMAEPADFVHVYDA 392 (448)
Q Consensus 352 ~~---~~~~~~--~~~~-~~v~~l~~sp~g~~l~s~~~d~~v~vwd~ 392 (448)
.+ .++..+ ..+. .+|.+..|-++|.+++.+ ++.+.|+|-
T Consensus 111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 111 KGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred CCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 11 223322 2333 578999999999766554 346888873
No 422
>PRK13684 Ycf48-like protein; Provisional
Probab=94.60 E-value=4.5 Score=38.80 Aligned_cols=151 Identities=17% Similarity=0.157 Sum_probs=84.4
Q ss_pred CCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEee-ecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcce
Q 013184 278 PWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPL-CGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSV 356 (448)
Q Consensus 278 ~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l-~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~ 356 (448)
...+..+.+.|++.+++++ ..|.+..-....++.-..+ ..-...++++.+.|+++.++.+ ..|.+++=.... +..-
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~-G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDD-LESW 248 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCC-CCcc
Confidence 4578899999987666544 4454433211222222222 2334678889999999877765 456654322221 2222
Q ss_pred EEEcc----CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeee---cCcCceEEEEEccCCCeEEEEEecCCc
Q 013184 357 AVLKG----NLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEI---DFFGEISGMTFSPDTEALFIGVWDRTY 429 (448)
Q Consensus 357 ~~~~~----~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~---~~~~~v~~~~fspdg~~L~~~~~D~~~ 429 (448)
..... ....+..+.+.|+++.++++ .+|.|. .....|+.-.... ........+.|..+++.+++|. .
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-~--- 322 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQ-R--- 322 (334)
T ss_pred ccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECC-C---
Confidence 21111 22357889999988866655 566443 3444444433322 2223577888887777766654 2
Q ss_pred ceEEEEec
Q 013184 430 GSLLQYNR 437 (448)
Q Consensus 430 ~~ll~~~~ 437 (448)
|.++++..
T Consensus 323 G~il~~~~ 330 (334)
T PRK13684 323 GVLLRYVG 330 (334)
T ss_pred ceEEEecC
Confidence 66666654
No 423
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.53 E-value=1.2 Score=43.12 Aligned_cols=104 Identities=9% Similarity=0.059 Sum_probs=76.1
Q ss_pred cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCcee----EeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 013184 277 FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAI----MPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNL 352 (448)
Q Consensus 277 ~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~----~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~ 352 (448)
..++|.++.||+|.+.+|+--.+..|.+++....+.. ++.+.....|....|+.+ .-+|.-...| +.+|-+...
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pe 142 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPE 142 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchh
Confidence 5679999999999999999999999999987443322 222334455888899865 5566665555 788877654
Q ss_pred CcceEEEccCCCCeEEEEEcCCCCEEEEEe
Q 013184 353 SKSVAVLKGNLGAIRSIRFTSDGNFMAMAE 382 (448)
Q Consensus 353 ~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~ 382 (448)
...++..+.|...|+-..|.|+-+.++-++
T Consensus 143 krslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 143 KRSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred hhhhhhhhhcccCccEEEEccccceEeeec
Confidence 566677777888888889999877554443
No 424
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.44 E-value=1.5 Score=38.13 Aligned_cols=173 Identities=16% Similarity=0.197 Sum_probs=95.8
Q ss_pred cCCEEEEEeCCC--eEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEeec
Q 013184 200 RDNLLIAGGFQG--ELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFSF 277 (448)
Q Consensus 200 ~~~~lvsg~~dg--~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~ 277 (448)
++.++.+.+.-| .|++|++.+.+......+.. ....-..+ ..-+.....-.-.+|.-.++|..+.+++..+..
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~-~~~FgEGi----t~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y 129 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAP-DTVFGEGI----TKLGDYFYQLTWKEGVAFKYDADTLEELGRFSY 129 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCC-ccccccce----eeccceEEEEEeccceeEEEChHHhhhhccccc
Confidence 567777777655 68999998877665544431 11111111 112343555566789999999999999988887
Q ss_pred CCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeee----cC-CCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 013184 278 PWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLC----GH-LDFSFASAWHPDGRIFATGNQDKTCRVWDVRNL 352 (448)
Q Consensus 278 ~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~----~h-~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~ 352 (448)
++.=+.++. +++.|+.+.....++.-|.++-....++. +. -..++.+.|- +|...|-.-++..|-..+..+
T Consensus 130 ~GeGWgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~s- 205 (262)
T COG3823 130 EGEGWGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDS- 205 (262)
T ss_pred CCcceeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCC-
Confidence 776666554 46667777666677777776543332221 10 1112223332 343333333333333333332
Q ss_pred CcceE------------EEccCCCCeEEEEEcCCC-CEEEEE
Q 013184 353 SKSVA------------VLKGNLGAIRSIRFTSDG-NFMAMA 381 (448)
Q Consensus 353 ~~~~~------------~~~~~~~~v~~l~~sp~g-~~l~s~ 381 (448)
++.+. .-..+..-.+.+++.|++ +++++|
T Consensus 206 GrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 206 GRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred CcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 22222 222344456788998887 566655
No 425
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=94.21 E-value=0.58 Score=45.91 Aligned_cols=134 Identities=16% Similarity=0.173 Sum_probs=85.9
Q ss_pred CCCEEEE-EecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCC-------EEEEEeCCCcEEEEEccCCCcceEEEc
Q 013184 289 DGKLLVI-VGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGR-------IFATGNQDKTCRVWDVRNLSKSVAVLK 360 (448)
Q Consensus 289 ~~~~l~~-~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~-------~l~s~~~d~~i~iwd~~~~~~~~~~~~ 360 (448)
+..+|+. ++....++-.|+..|+.+..+..|.+- -+.|.|..+ .-+.|-.+..|--.|.|-.+..+....
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e 555 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE 555 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee
Confidence 4445443 445567888899999999998877765 477887532 123344445565567765453333322
Q ss_pred cCCCCeEEEEEcC----CCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEEEEEe
Q 013184 361 GNLGAIRSIRFTS----DGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALFIGVW 425 (448)
Q Consensus 361 ~~~~~v~~l~~sp----~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~ 425 (448)
. ...++.-.||. ...|+|+|+..|-|++||--.-.....+++....|..+..+.+|++|++.+.
T Consensus 556 s-KdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk 623 (776)
T COG5167 556 S-KDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK 623 (776)
T ss_pred e-hhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec
Confidence 1 11222223332 3459999999999999994433333446667778999999999999887753
No 426
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=94.08 E-value=9.9 Score=40.75 Aligned_cols=229 Identities=14% Similarity=0.138 Sum_probs=117.2
Q ss_pred eeeEEEEe-----cC---CEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEE
Q 013184 192 TQVSTLAV-----RD---NLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRD 263 (448)
Q Consensus 192 ~~i~~l~~-----~~---~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~i 263 (448)
..|.|+.+ .. .++++|..+..+.+..........+....... .++.++-+.....+..+|.++..||.+.-
T Consensus 531 ~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~-~iPRSIl~~~~e~d~~yLlvalgdG~l~~ 609 (1096)
T KOG1897|consen 531 YEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGE-IIPRSILLTTFEGDIHYLLVALGDGALLY 609 (1096)
T ss_pred ceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCC-ccchheeeEEeeccceEEEEEcCCceEEE
Confidence 46778765 22 37888888887776655544444444333322 22233322222222458899999999876
Q ss_pred E--ecCCceEEEEee---cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCC--CCEEE
Q 013184 264 F--DMERFQLSKHFS---FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPD--GRIFA 336 (448)
Q Consensus 264 w--d~~~~~~~~~~~---~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~--g~~l~ 336 (448)
| |..+++....-+ ...|+.--.|+..++.-+.+..|.-..+|. .+++.+.+--.-+.--..+.|+.+ +..++
T Consensus 610 fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~-~n~kLv~spls~kev~~~c~f~s~a~~d~l~ 688 (1096)
T KOG1897|consen 610 FVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYS-SNGKLVYSPLSLKEVNHMCPFNSDAYPDSLA 688 (1096)
T ss_pred EEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEe-cCCcEEEeccchHHhhhhcccccccCCceEE
Confidence 6 555555433322 345666666766555555555555555664 334433221110100111223321 22455
Q ss_pred EEeCCCcEEEEEccCCCc-ceEEEccCCCCeEEEEEcCCCCEEEEEeCC--------------CeEEEEECCCCceeeee
Q 013184 337 TGNQDKTCRVWDVRNLSK-SVAVLKGNLGAIRSIRFTSDGNFMAMAEPA--------------DFVHVYDAKNGFEKEQE 401 (448)
Q Consensus 337 s~~~d~~i~iwd~~~~~~-~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d--------------~~v~vwd~~~~~~~~~~ 401 (448)
+++. +.+++--+....+ .++++.-+ ...+.+++.+....+++.+.. ..++++|-++-+.....
T Consensus 689 ~~~~-~~l~i~tid~iqkl~irtvpl~-~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~h 766 (1096)
T KOG1897|consen 689 SANG-GALTIGTIDEIQKLHIRTVPLG-ESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSH 766 (1096)
T ss_pred EecC-CceEEEEecchhhcceeeecCC-CChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeec
Confidence 5443 4577766644222 23343333 345677777755444443321 15777786654433221
Q ss_pred e--c--CcCceEEEEEccC-CCeEEEEE
Q 013184 402 I--D--FFGEISGMTFSPD-TEALFIGV 424 (448)
Q Consensus 402 ~--~--~~~~v~~~~fspd-g~~L~~~~ 424 (448)
. . ..-.|.++.|..| +.++++|.
T Consensus 767 ef~~~E~~~Si~s~~~~~d~~t~~vVGT 794 (1096)
T KOG1897|consen 767 EFERNETALSIISCKFTDDPNTYYVVGT 794 (1096)
T ss_pred cccccceeeeeeeeeecCCCceEEEEEE
Confidence 1 1 1124666679888 77888874
No 427
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.04 E-value=0.1 Score=54.30 Aligned_cols=139 Identities=9% Similarity=0.022 Sum_probs=83.5
Q ss_pred CcEEEEecC--CceEEEEee------cCCCeeEEEECC---CCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEE-
Q 013184 259 CGVRDFDME--RFQLSKHFS------FPWPVNHTSLSP---DGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFAS- 326 (448)
Q Consensus 259 g~v~iwd~~--~~~~~~~~~------~~~~v~~~~~sp---~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~- 326 (448)
|.+.||++. .|++...+. ....+.-+.|.| +.-++..+-.++.+++....+... ..+.+|...+..+
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a 231 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMA 231 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHH
Confidence 567788765 344332222 345566777776 455666666777877765543221 2234465443322
Q ss_pred ----------EEcCCCCEEEEEeCCCcEEEEEccCCC----cceEEEccCCC-CeEEEEEcCCC---------CEEEEEe
Q 013184 327 ----------AWHPDGRIFATGNQDKTCRVWDVRNLS----KSVAVLKGNLG-AIRSIRFTSDG---------NFMAMAE 382 (448)
Q Consensus 327 ----------~~~p~g~~l~s~~~d~~i~iwd~~~~~----~~~~~~~~~~~-~v~~l~~sp~g---------~~l~s~~ 382 (448)
..+|||..|+++..||.++.|.+.-.+ .|++..+.|.+ +-.|.-|..+- .++++++
T Consensus 232 ~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Ittt 311 (1283)
T KOG1916|consen 232 FFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTT 311 (1283)
T ss_pred HHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecc
Confidence 379999999999999999998875323 46677777773 33333343221 2444544
Q ss_pred C-CCeEEEEECCCCcee
Q 013184 383 P-ADFVHVYDAKNGFEK 398 (448)
Q Consensus 383 ~-d~~v~vwd~~~~~~~ 398 (448)
. +..+++|.....+++
T Consensus 312 d~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 312 DVNREEKFWAEAPWQCL 328 (1283)
T ss_pred cCCcceeEeeccchhhh
Confidence 3 346888987776655
No 428
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=93.94 E-value=11 Score=40.55 Aligned_cols=146 Identities=11% Similarity=0.112 Sum_probs=91.6
Q ss_pred eecCCCeeEEEECCCCCEEEEEecC--------------CcEEEEECCCCceeEeeec-CC---CcEEEEEEcCC-CCEE
Q 013184 275 FSFPWPVNHTSLSPDGKLLVIVGDN--------------PEGILVDSQTGKAIMPLCG-HL---DFSFASAWHPD-GRIF 335 (448)
Q Consensus 275 ~~~~~~v~~~~~sp~~~~l~~~~~d--------------~~i~i~d~~~~~~~~~l~~-h~---~~v~~~~~~p~-g~~l 335 (448)
.........+++.+....+++.+.. ..++++|.++-+.++..+- .. -.+.++.|..| +.++
T Consensus 711 vpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~ 790 (1096)
T KOG1897|consen 711 VPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYY 790 (1096)
T ss_pred ecCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEE
Confidence 4445567778888755555554421 1356677666555443221 11 22445568777 6677
Q ss_pred EEEeC----------CCcEEEEEccCCCcceEEEcc--CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeec
Q 013184 336 ATGNQ----------DKTCRVWDVRNLSKSVAVLKG--NLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEID 403 (448)
Q Consensus 336 ~s~~~----------d~~i~iwd~~~~~~~~~~~~~--~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~ 403 (448)
+.|.. .|.|.++.... .+.+..... -.+.+.++.. -+|++||. -+..|++|+..+.+.++....
T Consensus 791 vVGT~~v~Pde~ep~~GRIivfe~~e-~~~L~~v~e~~v~Gav~aL~~-fngkllA~--In~~vrLye~t~~~eLr~e~~ 866 (1096)
T KOG1897|consen 791 VVGTGLVYPDENEPVNGRIIVFEFEE-LNSLELVAETVVKGAVYALVE-FNGKLLAG--INQSVRLYEWTTERELRIECN 866 (1096)
T ss_pred EEEEEeeccCCCCcccceEEEEEEec-CCceeeeeeeeeccceeehhh-hCCeEEEe--cCcEEEEEEccccceehhhhc
Confidence 77752 46677777755 333333222 2345555543 26777765 455899999998877777777
Q ss_pred CcCceEEEEEccCCCeEEEEE
Q 013184 404 FFGEISGMTFSPDTEALFIGV 424 (448)
Q Consensus 404 ~~~~v~~~~fspdg~~L~~~~ 424 (448)
+..++..+...-.|..+++|-
T Consensus 867 ~~~~~~aL~l~v~gdeI~VgD 887 (1096)
T KOG1897|consen 867 ISNPIIALDLQVKGDEIAVGD 887 (1096)
T ss_pred ccCCeEEEEEEecCcEEEEee
Confidence 888899999999999999884
No 429
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.60 E-value=0.011 Score=57.05 Aligned_cols=136 Identities=14% Similarity=0.208 Sum_probs=94.8
Q ss_pred EEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEE-EEeCCCcEEEEEccCCCcceEEEcc
Q 013184 283 HTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFA-TGNQDKTCRVWDVRNLSKSVAVLKG 361 (448)
Q Consensus 283 ~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~ 361 (448)
...|-|.+.-+++++.+..+..||- .++.+..+. .+.....++|.-+|..++ .+-..+.+.+||+.+.......+.+
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~-agq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg 116 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDK-AGQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGG 116 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhh-hcceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccC
Confidence 4567787777999998888888984 444443332 344556788888776544 4456778999999753222222322
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeecCcCceEEEEEccCCCeEE
Q 013184 362 NLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEIDFFGEISGMTFSPDTEALF 421 (448)
Q Consensus 362 ~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fspdg~~L~ 421 (448)
... -.-+.|++.+..++.+...|.+.|++..+.+.....-.|...+++++|.+.+..+.
T Consensus 117 ~~s-~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil 175 (615)
T KOG2247|consen 117 TSS-KSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVIL 175 (615)
T ss_pred cch-HHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeee
Confidence 211 12278999999999999999999999887666555555889999999999875443
No 430
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=93.55 E-value=7.3 Score=37.43 Aligned_cols=41 Identities=22% Similarity=0.140 Sum_probs=21.4
Q ss_pred eEEEEECCCCceeeeeecCcC-ceEEEEEccCCCeEEEEEecC
Q 013184 386 FVHVYDAKNGFEKEQEIDFFG-EISGMTFSPDTEALFIGVWDR 427 (448)
Q Consensus 386 ~v~vwd~~~~~~~~~~~~~~~-~v~~~~fspdg~~L~~~~~D~ 427 (448)
.+.+||..+.+-. ....... .-...+..-+++.+++|+.+.
T Consensus 291 ~~e~yd~~~~~W~-~~~~lp~~~~~~~~~~~~~~iyv~GG~~~ 332 (346)
T TIGR03547 291 SSEVYALDNGKWS-KVGKLPQGLAYGVSVSWNNGVLLIGGENS 332 (346)
T ss_pred EeeEEEecCCccc-ccCCCCCCceeeEEEEcCCEEEEEeccCC
Confidence 4678887765322 1111111 122233445788888888764
No 431
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=93.33 E-value=0.64 Score=39.87 Aligned_cols=31 Identities=13% Similarity=0.311 Sum_probs=26.2
Q ss_pred CCeEEEEEcCCC------CEEEEEeCCCeEEEEECCC
Q 013184 364 GAIRSIRFTSDG------NFMAMAEPADFVHVYDAKN 394 (448)
Q Consensus 364 ~~v~~l~~sp~g------~~l~s~~~d~~v~vwd~~~ 394 (448)
..|..++|||.| .+||+.+.++.|.||.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 378999999965 4889999999999998663
No 432
>PLN02193 nitrile-specifier protein
Probab=93.16 E-value=11 Score=38.16 Aligned_cols=192 Identities=13% Similarity=0.063 Sum_probs=90.5
Q ss_pred EEEecCCEEEEEeCC-------CeEEEEEcCCCCceeEEEeecCCCCc-eeeEEEEeCCCCCeeEEEEeCC-----CcEE
Q 013184 196 TLAVRDNLLIAGGFQ-------GELICKYLDQPGVSFCSRTTYDENAI-TNAVEIYNSPSGGIHFMASNND-----CGVR 262 (448)
Q Consensus 196 ~l~~~~~~lvsg~~d-------g~i~vw~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~s~d-----g~v~ 262 (448)
+...++.+++.|+.+ ..+.+||+.+........ ....... ....+.. ..++.+++.|+.+ ..+.
T Consensus 171 ~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~-~g~~P~~~~~~~~~v--~~~~~lYvfGG~~~~~~~ndv~ 247 (470)
T PLN02193 171 IAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPA-TGDVPHLSCLGVRMV--SIGSTLYVFGGRDASRQYNGFY 247 (470)
T ss_pred EEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCC-CCCCCCCcccceEEE--EECCEEEEECCCCCCCCCccEE
Confidence 344477788888853 235566766554321110 0001110 0011110 1134466666654 3588
Q ss_pred EEecCCceEEEEeec---CCCe--eEEEECCCCCEEEEEecCC-----cEEEEECCCCceeEeee-----cCCCcEEEEE
Q 013184 263 DFDMERFQLSKHFSF---PWPV--NHTSLSPDGKLLVIVGDNP-----EGILVDSQTGKAIMPLC-----GHLDFSFASA 327 (448)
Q Consensus 263 iwd~~~~~~~~~~~~---~~~v--~~~~~sp~~~~l~~~~~d~-----~i~i~d~~~~~~~~~l~-----~h~~~v~~~~ 327 (448)
+||+.+.+....... +.+. .+++. -++++.+.|+.++ .+..||+.+.+-...-. ........+.
T Consensus 248 ~yD~~t~~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~ 326 (470)
T PLN02193 248 SFDTTTNEWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEV 326 (470)
T ss_pred EEECCCCEEEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEE
Confidence 889888765443221 1111 12222 2456666666443 46778877655322110 0111111222
Q ss_pred EcCCCCEEEEEeCC----CcEEEEEccCCCcceEEEcc------CCCCeEEEEEcCCCCEEEEEeCC-------------
Q 013184 328 WHPDGRIFATGNQD----KTCRVWDVRNLSKSVAVLKG------NLGAIRSIRFTSDGNFMAMAEPA------------- 384 (448)
Q Consensus 328 ~~p~g~~l~s~~~d----~~i~iwd~~~~~~~~~~~~~------~~~~v~~l~~sp~g~~l~s~~~d------------- 384 (448)
+ ++++++.++.+ ..+.+||+.+ .+- ..+.. ......++. -++++++.|+..
T Consensus 327 ~--~gkiyviGG~~g~~~~dv~~yD~~t-~~W-~~~~~~g~~P~~R~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~ 400 (470)
T PLN02193 327 V--QGKVWVVYGFNGCEVDDVHYYDPVQ-DKW-TQVETFGVRPSERSVFASAA--VGKHIVIFGGEIAMDPLAHVGPGQL 400 (470)
T ss_pred E--CCcEEEEECCCCCccCceEEEECCC-CEE-EEeccCCCCCCCcceeEEEE--ECCEEEEECCccCCccccccCccce
Confidence 2 56777777654 4588899865 221 11211 111112222 256677777642
Q ss_pred -CeEEEEECCCCce
Q 013184 385 -DFVHVYDAKNGFE 397 (448)
Q Consensus 385 -~~v~vwd~~~~~~ 397 (448)
+.+.+||+.+..-
T Consensus 401 ~ndv~~~D~~t~~W 414 (470)
T PLN02193 401 TDGTFALDTETLQW 414 (470)
T ss_pred eccEEEEEcCcCEE
Confidence 2488999887643
No 433
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=92.98 E-value=7.4 Score=35.86 Aligned_cols=140 Identities=14% Similarity=0.077 Sum_probs=93.4
Q ss_pred eEEEEeCCCcEEEEecCCce---EEEEeecCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCce---eEeeecCCCcEE
Q 013184 251 HFMASNNDCGVRDFDMERFQ---LSKHFSFPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKA---IMPLCGHLDFSF 324 (448)
Q Consensus 251 ~l~s~s~dg~v~iwd~~~~~---~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~---~~~l~~h~~~v~ 324 (448)
++..+..+..++|+|+.+-. .+..+...+.-.++..+ |++..++.-+.-..+.|+.+.+. ............
T Consensus 98 yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vs--Gn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~ 175 (370)
T COG5276 98 YVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVS--GNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTH 175 (370)
T ss_pred EEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEec--CCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCce
Confidence 67778888899999987643 33333344555666666 88998888666677888766542 333333333335
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCC-CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 013184 325 ASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLG-AIRSIRFTSDGNFMAMAEPADFVHVYDAKNGF 396 (448)
Q Consensus 325 ~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~ 396 (448)
.++.| |++-..+..|+-+.|-|+.++..++..-.-..+ .++++..+++.-+++.... -|.+-|.....
T Consensus 176 ~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~e--gvlivd~s~~s 244 (370)
T COG5276 176 DVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDE--GVLIVDVSGPS 244 (370)
T ss_pred eEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEccc--ceEEEecCCCC
Confidence 56665 677777778889999999887666655444444 7888888887777766533 36677765544
No 434
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=92.96 E-value=15 Score=39.44 Aligned_cols=74 Identities=20% Similarity=0.072 Sum_probs=52.5
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeee----e-----------c-Cc---CceEEEEEccCCCeEEEEE
Q 013184 364 GAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQE----I-----------D-FF---GEISGMTFSPDTEALFIGV 424 (448)
Q Consensus 364 ~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~----~-----------~-~~---~~v~~~~fspdg~~L~~~~ 424 (448)
+.|.++....-+.+++.+-.||+|.++|-.+.+.+... . + ++ ..+-.++|||.+..++.-.
T Consensus 260 ~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~ 339 (753)
T PF11635_consen 260 KRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQID 339 (753)
T ss_pred CeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEe
Confidence 35667777777889999999999999997765433222 0 0 11 1234589999999999999
Q ss_pred ecCCcceEEEEec
Q 013184 425 WDRTYGSLLQYNR 437 (448)
Q Consensus 425 ~D~~~~~ll~~~~ 437 (448)
.|+.+..++...+
T Consensus 340 ~~~~~~~~~~~~~ 352 (753)
T PF11635_consen 340 EDGKTKKLLYMMR 352 (753)
T ss_pred cCCCceeeEEeec
Confidence 9988775555444
No 435
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.89 E-value=1.3 Score=47.72 Aligned_cols=100 Identities=13% Similarity=0.094 Sum_probs=69.4
Q ss_pred eeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCc-eEEEEeecCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEe
Q 013184 237 TNAVEIYNSPSGGIHFMASNNDCGVRDFDMERF-QLSKHFSFPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMP 315 (448)
Q Consensus 237 ~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~ 315 (448)
+..++..|.|.-....+++..|+.|++..+... +.+..+.....++|++|+|.|+.+++|-..|++.-|-.. ++....
T Consensus 156 vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ 234 (1405)
T KOG3630|consen 156 VFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSE 234 (1405)
T ss_pred cccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeec
Confidence 344555557766556778888999998877532 233445677789999999999999999999999888643 332233
Q ss_pred eec----CCCcEEEEEEcCCCCEEEE
Q 013184 316 LCG----HLDFSFASAWHPDGRIFAT 337 (448)
Q Consensus 316 l~~----h~~~v~~~~~~p~g~~l~s 337 (448)
+.+ ....|.+|+|-..-.++++
T Consensus 235 ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 235 IPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred ccCCCcCCCcceeEEEEecceeEEEE
Confidence 322 1367899999876555543
No 436
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=92.83 E-value=19 Score=40.07 Aligned_cols=28 Identities=11% Similarity=0.156 Sum_probs=20.1
Q ss_pred cCcCceEEEEEccCCCeEEEEEecCCcc
Q 013184 403 DFFGEISGMTFSPDTEALFIGVWDRTYG 430 (448)
Q Consensus 403 ~~~~~v~~~~fspdg~~L~~~~~D~~~~ 430 (448)
++...+.++|.+|||...++-..+-.++
T Consensus 659 A~lnsp~alaVsPdg~v~IAD~gN~rIr 686 (1899)
T KOG4659|consen 659 AKLNSPYALAVSPDGDVIIADSGNSRIR 686 (1899)
T ss_pred cccCCcceEEECCCCcEEEecCCchhhh
Confidence 3556789999999999877655444443
No 437
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=92.76 E-value=0.54 Score=29.61 Aligned_cols=32 Identities=22% Similarity=0.288 Sum_probs=26.6
Q ss_pred CCeeEEEECCCC---CEEEEEecCCcEEEEECCCC
Q 013184 279 WPVNHTSLSPDG---KLLVIVGDNPEGILVDSQTG 310 (448)
Q Consensus 279 ~~v~~~~~sp~~---~~l~~~~~d~~i~i~d~~~~ 310 (448)
+.|.++.|+|.+ .+|+.+-..+.|.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 468999999844 58888888899999999853
No 438
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=92.54 E-value=17 Score=38.96 Aligned_cols=106 Identities=15% Similarity=0.144 Sum_probs=68.9
Q ss_pred eEEEEeCCCcEEEEecCCceEEEEeecCCCee---------EEEEC----------------CCCCEEEEEecCCcEEEE
Q 013184 251 HFMASNNDCGVRDFDMERFQLSKHFSFPWPVN---------HTSLS----------------PDGKLLVIVGDNPEGILV 305 (448)
Q Consensus 251 ~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~---------~~~~s----------------p~~~~l~~~~~d~~i~i~ 305 (448)
.++.++.++.|.-.|..+|+.+..+.....+. .+++. ..+..+++++.|+.+.-.
T Consensus 196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL 275 (764)
T TIGR03074 196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL 275 (764)
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence 57777778899999999999988887433221 22221 134578889999999999
Q ss_pred ECCCCceeEeeecCCCcE-------------EEEEEcC--CCCEEEEEeC----------CCcEEEEEccCCCcceEE
Q 013184 306 DSQTGKAIMPLCGHLDFS-------------FASAWHP--DGRIFATGNQ----------DKTCRVWDVRNLSKSVAV 358 (448)
Q Consensus 306 d~~~~~~~~~l~~h~~~v-------------~~~~~~p--~g~~l~s~~~----------d~~i~iwd~~~~~~~~~~ 358 (448)
|.++|+.+..+.. .+.+ ..+.-.| .+..+++|+. +|.|+-+|+++ ++.+-.
T Consensus 276 DA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~T-Gkl~W~ 351 (764)
T TIGR03074 276 DADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNT-GALVWA 351 (764)
T ss_pred ECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCC-CcEeeE
Confidence 9999998876532 1111 1122223 2345566643 57899999977 554433
No 439
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.49 E-value=8.7 Score=35.43 Aligned_cols=182 Identities=10% Similarity=0.106 Sum_probs=109.4
Q ss_pred eeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEee--cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeE
Q 013184 237 TNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFS--FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIM 314 (448)
Q Consensus 237 ~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~ 314 (448)
+.++.+ +|+.+.++++.. ...-.|+=...|++++++. .-.....+.+..+++++++--.++.+.++.+.....+.
T Consensus 88 vS~LTy--np~~rtLFav~n-~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~ 164 (316)
T COG3204 88 VSSLTY--NPDTRTLFAVTN-KPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVI 164 (316)
T ss_pred ccceee--CCCcceEEEecC-CCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEE
Confidence 556655 898875555554 4455555555688888887 33345567777777766666667777776554432211
Q ss_pred -------eee--cC-CCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcce--EEEccC-------CCCeEEEEEcC-C
Q 013184 315 -------PLC--GH-LDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSV--AVLKGN-------LGAIRSIRFTS-D 374 (448)
Q Consensus 315 -------~l~--~h-~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~--~~~~~~-------~~~v~~l~~sp-~ 374 (448)
.+. .+ ....-.++|.|..+.|..+-.-.-++||.+......+ +....+ ...|.++.|.+ .
T Consensus 165 ~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~ 244 (316)
T COG3204 165 SAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAIT 244 (316)
T ss_pred eccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCC
Confidence 111 12 4566789999988888888877778888775322121 111111 12467788886 4
Q ss_pred CCEEEEEeCCCeEEEEECCCCceeeeeecCc---------CceEEEEEccCCCeEEE
Q 013184 375 GNFMAMAEPADFVHVYDAKNGFEKEQEIDFF---------GEISGMTFSPDTEALFI 422 (448)
Q Consensus 375 g~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~---------~~v~~~~fspdg~~L~~ 422 (448)
+..|+-+..++.|.-.|.. |..+..+.-+. ...-+++..++|..-++
T Consensus 245 ~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIv 300 (316)
T COG3204 245 NSLLVLSDESRRLLEVDLS-GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIV 300 (316)
T ss_pred CcEEEEecCCceEEEEecC-CCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEE
Confidence 5666666677777777754 44443333222 13457888877764433
No 440
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=92.39 E-value=10 Score=36.12 Aligned_cols=142 Identities=18% Similarity=0.181 Sum_probs=82.8
Q ss_pred CCeeEEEECCCCCEEEEEecCCc------EEEEECCC--C--cee-----EeeecCCC--------cEEEEEEcCCCCEE
Q 013184 279 WPVNHTSLSPDGKLLVIVGDNPE------GILVDSQT--G--KAI-----MPLCGHLD--------FSFASAWHPDGRIF 335 (448)
Q Consensus 279 ~~v~~~~~sp~~~~l~~~~~d~~------i~i~d~~~--~--~~~-----~~l~~h~~--------~v~~~~~~p~g~~l 335 (448)
+.+..+.+.|++..+++.++++. +..+.+.. + ..+ ..+....+ -.-++++.++|.++
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~ 99 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW 99 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence 45677888876667777777777 55554433 1 111 11111111 23367887788888
Q ss_pred EEEeCC------CcEEEEEccCCCcceEEEc---------------cCCCCeEEEEEcCCCCEEEEEeCC-----C----
Q 013184 336 ATGNQD------KTCRVWDVRNLSKSVAVLK---------------GNLGAIRSIRFTSDGNFMAMAEPA-----D---- 385 (448)
Q Consensus 336 ~s~~~d------~~i~iwd~~~~~~~~~~~~---------------~~~~~v~~l~~sp~g~~l~s~~~d-----~---- 385 (448)
++.-.+ ..|..++.. +..+..+. ......-.|+++|+|+.|+++... +
T Consensus 100 is~E~~~~~~~~p~I~~~~~~--G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 100 ISSEGGRTGGIPPRIRRFDLD--GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEeCCccCCCCCCEEEEECCC--CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 777666 677777764 33333221 123467899999999966665432 1
Q ss_pred -------eEEEEECCC-Ccee----eeeec-----CcCceEEEEEccCCCeEEE
Q 013184 386 -------FVHVYDAKN-GFEK----EQEID-----FFGEISGMTFSPDTEALFI 422 (448)
Q Consensus 386 -------~v~vwd~~~-~~~~----~~~~~-----~~~~v~~~~fspdg~~L~~ 422 (448)
.|..||..+ +... +.+.. ....|+.+.+-+++++|+.
T Consensus 178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 234455554 2222 22221 3456899999999997774
No 441
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.37 E-value=7.1 Score=34.13 Aligned_cols=186 Identities=12% Similarity=0.093 Sum_probs=96.5
Q ss_pred cCCCCceeeEEEEeCCCCCeeEEEEeC--CCcEEEEecCCceEEEEeecC-CCeeEEEECCCCCEEEEE-ecCCcEEEEE
Q 013184 231 YDENAITNAVEIYNSPSGGIHFMASNN--DCGVRDFDMERFQLSKHFSFP-WPVNHTSLSPDGKLLVIV-GDNPEGILVD 306 (448)
Q Consensus 231 ~~~~~~~~~v~~~~~~~~~~~l~s~s~--dg~v~iwd~~~~~~~~~~~~~-~~v~~~~~sp~~~~l~~~-~~d~~i~i~d 306 (448)
++....++.+.. .+| .++.+.+. ...|++||+.+++.+...... ..+..=-...-|..+..- -.++...++|
T Consensus 42 hDs~sfTQGL~~---~~g-~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d 117 (262)
T COG3823 42 HDSTSFTQGLEY---LDG-HILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYD 117 (262)
T ss_pred Cchhhhhcceee---eCC-EEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEC
Confidence 333444555554 233 56666654 346999999999987766532 122211111224444433 3677888899
Q ss_pred CCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCc---ceEEEccC-CCCeEEEEEcCCCCEEEEEe
Q 013184 307 SQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSK---SVAVLKGN-LGAIRSIRFTSDGNFMAMAE 382 (448)
Q Consensus 307 ~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~---~~~~~~~~-~~~v~~l~~sp~g~~l~s~~ 382 (448)
..+-+++..+. -.+.-..++. |+.-|..++...+++.-|..+... ...++.+. -..++.+.|- +|...|--=
T Consensus 118 ~~t~~~lg~~~-y~GeGWgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw 193 (262)
T COG3823 118 ADTLEELGRFS-YEGEGWGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVW 193 (262)
T ss_pred hHHhhhhcccc-cCCcceeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeee
Confidence 88877766554 2333345543 455566666556677666543211 11111111 1223334442 444443333
Q ss_pred CCCeEEEEECCCCceeeee------------ecCcCceEEEEEccCCCeEEEEE
Q 013184 383 PADFVHVYDAKNGFEKEQE------------IDFFGEISGMTFSPDTEALFIGV 424 (448)
Q Consensus 383 ~d~~v~vwd~~~~~~~~~~------------~~~~~~v~~~~fspdg~~L~~~~ 424 (448)
....|...+..+|+.+.-+ ..+..-.++|++.|++..|+..+
T Consensus 194 ~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 194 QTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred eecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 3334444455555443222 12345688999999885555443
No 442
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=92.21 E-value=11 Score=36.03 Aligned_cols=100 Identities=20% Similarity=0.274 Sum_probs=53.7
Q ss_pred eeEEEECCCCCEEEEEecCCcEEEEECCCCce---eEee----ecCCCcEEEEEEcCC----CCEEEEEeCC--------
Q 013184 281 VNHTSLSPDGKLLVIVGDNPEGILVDSQTGKA---IMPL----CGHLDFSFASAWHPD----GRIFATGNQD-------- 341 (448)
Q Consensus 281 v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~---~~~l----~~h~~~v~~~~~~p~----g~~l~s~~~d-------- 341 (448)
.+.++|.|+|+++++ ...|.|++++ ..+.. +..+ .........++++|+ +.+.++.+..
T Consensus 4 P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp EEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred ceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 578999999877664 5599999999 44443 2222 123456889999994 4333333321
Q ss_pred CcEEEEEccCCC------c-ceEEEcc---CCCCeEEEEEcCCCCEEEEEe
Q 013184 342 KTCRVWDVRNLS------K-SVAVLKG---NLGAIRSIRFTSDGNFMAMAE 382 (448)
Q Consensus 342 ~~i~iwd~~~~~------~-~~~~~~~---~~~~v~~l~~sp~g~~l~s~~ 382 (448)
..|.-|...... + .+..+.. .......|.|.|+|.+.++.+
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G 132 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVG 132 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeC
Confidence 123334443211 1 1122222 223456799999996555544
No 443
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=92.11 E-value=0.024 Score=54.91 Aligned_cols=140 Identities=14% Similarity=0.128 Sum_probs=98.3
Q ss_pred CceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEeecCCCeeEEEECCCCCEEEE-EecCCcEEEEECCCCcee
Q 013184 235 AITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFSFPWPVNHTSLSPDGKLLVI-VGDNPEGILVDSQTGKAI 313 (448)
Q Consensus 235 ~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~~d~~i~i~d~~~~~~~ 313 (448)
..++++...+-+.+.. ++.++.+..|..||-. ++.......++....++|..++..+++ +...+.+.+||+.+...
T Consensus 33 alv~pi~~~w~~e~~n-lavaca~tiv~~YD~a-gq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt- 109 (615)
T KOG2247|consen 33 ALVGPIIHRWRPEGHN-LAVACANTIVIYYDKA-GQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT- 109 (615)
T ss_pred hccccceeeEecCCCc-eehhhhhhHHHhhhhh-cceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH-
Confidence 3455666667788775 6666677788888854 455555556677778888887776554 55678999999876432
Q ss_pred Eeee--c-CCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEE
Q 013184 314 MPLC--G-HLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAM 380 (448)
Q Consensus 314 ~~l~--~-h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s 380 (448)
+++. + |... -+.|++.+..++.+...+.++|++... .+.+.+.-.|...+.+++|.+.+..+..
T Consensus 110 qqLE~gg~~s~s--ll~wsKg~~el~ig~~~gn~viynhgt-sR~iiv~Gkh~RRgtq~av~lEd~vil~ 176 (615)
T KOG2247|consen 110 QQLESGGTSSKS--LLAWSKGTPELVIGNNAGNIVIYNHGT-SRRIIVMGKHQRRGTQIAVTLEDYVILC 176 (615)
T ss_pred HHHhccCcchHH--HHhhccCCccccccccccceEEEeccc-hhhhhhhcccccceeEEEecccceeeec
Confidence 2222 1 2222 268999999999999999999999876 4444444458888999999998765543
No 444
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=91.81 E-value=13 Score=36.00 Aligned_cols=147 Identities=15% Similarity=0.167 Sum_probs=89.7
Q ss_pred CeEEEEEcCCCCceeEEEeec------CCCCceeeEEEEeCC-CCCeeEEEEeCCCcEEEEecC---C----ceEEEEee
Q 013184 211 GELICKYLDQPGVSFCSRTTY------DENAITNAVEIYNSP-SGGIHFMASNNDCGVRDFDME---R----FQLSKHFS 276 (448)
Q Consensus 211 g~i~vw~~~~~~~~~~~~~~~------~~~~~~~~v~~~~~~-~~~~~l~s~s~dg~v~iwd~~---~----~~~~~~~~ 276 (448)
..|++|.++.....+. .+.. ..-.-+..+|++.++ +|..++++...+|.+..|-+. . .++++.|.
T Consensus 127 n~l~~f~id~~~g~L~-~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~ 205 (381)
T PF02333_consen 127 NSLRLFRIDPDTGELT-DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK 205 (381)
T ss_dssp -EEEEEEEETTTTEEE-E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE
T ss_pred CeEEEEEecCCCCcce-EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec
Confidence 4699998875332221 1111 111225678888876 466788888899999888764 2 35788888
Q ss_pred cCCCeeEEEECCCCCEEEEEecCCcEEEEECCC-----CceeEeeec--CCCcEEEEEEc--CCCC-EEEEEeC-CCcEE
Q 013184 277 FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQT-----GKAIMPLCG--HLDFSFASAWH--PDGR-IFATGNQ-DKTCR 345 (448)
Q Consensus 277 ~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~-----~~~~~~l~~--h~~~v~~~~~~--p~g~-~l~s~~~-d~~i~ 345 (448)
....+..+........|+++-.+.-|.-|+..- ++.+....+ ....+-.++.- +++. ||+.+++ +++..
T Consensus 206 ~~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~ 285 (381)
T PF02333_consen 206 VGSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFA 285 (381)
T ss_dssp -SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEE
T ss_pred CCCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEE
Confidence 888999999999888999999998888888752 222322222 33556666653 4443 6666665 67899
Q ss_pred EEEccCCCcceEE
Q 013184 346 VWDVRNLSKSVAV 358 (448)
Q Consensus 346 iwd~~~~~~~~~~ 358 (448)
||+.......+..
T Consensus 286 Vy~r~~~~~~~g~ 298 (381)
T PF02333_consen 286 VYDREGPNAYVGS 298 (381)
T ss_dssp EEESSTT--EEEE
T ss_pred EEecCCCCcccce
Confidence 9998753333333
No 445
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=90.88 E-value=17 Score=35.65 Aligned_cols=144 Identities=14% Similarity=0.168 Sum_probs=80.1
Q ss_pred eeEEEECCCCCEEEEEecCCcEEEEECCCCce--eEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCc----
Q 013184 281 VNHTSLSPDGKLLVIVGDNPEGILVDSQTGKA--IMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSK---- 354 (448)
Q Consensus 281 v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~--~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~---- 354 (448)
...+..++++.+++++......+-||. |+. ...-......+.++.|.+++..++++ ..|.+. |.... +.
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~-G~~~~~ 315 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGT-GLTEED 315 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCC-CCcccc
Confidence 445566778877766655433333442 221 11112234567899999999887766 555443 33222 22
Q ss_pred -ceEEEcc--CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeee---cCcCceEEEEEccCCCeEEEEEecCC
Q 013184 355 -SVAVLKG--NLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQEI---DFFGEISGMTFSPDTEALFIGVWDRT 428 (448)
Q Consensus 355 -~~~~~~~--~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~~---~~~~~v~~~~fspdg~~L~~~~~D~~ 428 (448)
....+.. ....+..+.|.+++..+++| ..|.|.... ..|+.-.... ........+.|.++++-+++| .+
T Consensus 316 ~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~-- 390 (398)
T PLN00033 316 FDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-ND-- 390 (398)
T ss_pred cceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CC--
Confidence 2233222 22358889999887766655 567555543 4454432222 234568899998877665554 34
Q ss_pred cceEEEE
Q 013184 429 YGSLLQY 435 (448)
Q Consensus 429 ~~~ll~~ 435 (448)
|.+|++
T Consensus 391 -G~il~~ 396 (398)
T PLN00033 391 -GVLLRY 396 (398)
T ss_pred -cEEEEe
Confidence 445554
No 446
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=90.76 E-value=5.5 Score=36.06 Aligned_cols=143 Identities=20% Similarity=0.235 Sum_probs=79.8
Q ss_pred EEEEecCCceEEEEee-cCCCeeEEEECCCCCEEEEEecC---CcEEEEECCC----Ccee---EeeecCCCcEEEEEEc
Q 013184 261 VRDFDMERFQLSKHFS-FPWPVNHTSLSPDGKLLVIVGDN---PEGILVDSQT----GKAI---MPLCGHLDFSFASAWH 329 (448)
Q Consensus 261 v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d---~~i~i~d~~~----~~~~---~~l~~h~~~v~~~~~~ 329 (448)
-.+||+.+++.....- ..--+.+-.+-|+|+++.+|+.. ..+++++... .... ..+....=+ -+..--
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWY-pT~~~L 126 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWY-PTATTL 126 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCcc-ccceEC
Confidence 3488998877543322 22223344567899999998752 3578887654 1111 112211111 234456
Q ss_pred CCCCEEEEEeCCC-cEEEEEccCCCc-ceE--EEcc-----CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeee
Q 013184 330 PDGRIFATGNQDK-TCRVWDVRNLSK-SVA--VLKG-----NLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQ 400 (448)
Q Consensus 330 p~g~~l~s~~~d~-~i~iwd~~~~~~-~~~--~~~~-----~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~ 400 (448)
|||+.|+.|+... +..+|..+.... ... .+.. ...--..+-..|+|+.++.+..+. .|||..+.+.++.
T Consensus 127 ~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~~~ 204 (243)
T PF07250_consen 127 PDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVVRT 204 (243)
T ss_pred CCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEEee
Confidence 7999988887764 456665532111 111 1110 111122456679999999887654 5778887766666
Q ss_pred eecCcC
Q 013184 401 EIDFFG 406 (448)
Q Consensus 401 ~~~~~~ 406 (448)
+....+
T Consensus 205 lP~lPg 210 (243)
T PF07250_consen 205 LPDLPG 210 (243)
T ss_pred CCCCCC
Confidence 655444
No 447
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=90.73 E-value=3.8 Score=40.26 Aligned_cols=81 Identities=20% Similarity=0.306 Sum_probs=57.4
Q ss_pred cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEc----CCC----------------C-EE
Q 013184 277 FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWH----PDG----------------R-IF 335 (448)
Q Consensus 277 ~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~----p~g----------------~-~l 335 (448)
....+.+++.+|.+++.|+...-|.|.++|+.++..++.++|-.+.- +.|. +.. . ++
T Consensus 306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAq--c~wi~~~~~~~~~~~~~~~~~~~~~~~l~Lv 383 (415)
T PF14655_consen 306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQ--CGWIEVPEEGDRDRSNSNSPKSSSRFALFLV 383 (415)
T ss_pred CCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccce--EEEEEeecccccccccccccCCCCcceEEEE
Confidence 45568899999999998888788999999999999888888765542 2221 111 1 23
Q ss_pred EEEeCCCcEEEEEccCCCcceEEEc
Q 013184 336 ATGNQDKTCRVWDVRNLSKSVAVLK 360 (448)
Q Consensus 336 ~s~~~d~~i~iwd~~~~~~~~~~~~ 360 (448)
+-+-.-|.|.||.+++ +..+..+.
T Consensus 384 IyaprRg~lEvW~~~~-g~Rv~a~~ 407 (415)
T PF14655_consen 384 IYAPRRGILEVWSMRQ-GPRVAAFN 407 (415)
T ss_pred EEeccCCeEEEEecCC-CCEEEEEE
Confidence 3445678899999987 55555444
No 448
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=90.71 E-value=16 Score=34.96 Aligned_cols=73 Identities=15% Similarity=0.108 Sum_probs=42.9
Q ss_pred ceEEEccCCCCeEEEEEcC-------CCCEEEEEeCCCeEEEEECCCCceeee---ee-cCcCceEEEEEccCCCeEEEE
Q 013184 355 SVAVLKGNLGAIRSIRFTS-------DGNFMAMAEPADFVHVYDAKNGFEKEQ---EI-DFFGEISGMTFSPDTEALFIG 423 (448)
Q Consensus 355 ~~~~~~~~~~~v~~l~~sp-------~g~~l~s~~~d~~v~vwd~~~~~~~~~---~~-~~~~~v~~~~fspdg~~L~~~ 423 (448)
++..+..| ..+..+.|.. .|.++++.-..+.|....+..+..+.. +. .....+.++++.|||...++.
T Consensus 245 P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~ 323 (331)
T PF07995_consen 245 PVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSD 323 (331)
T ss_dssp -SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE
T ss_pred cceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEE
Confidence 33445544 4456677753 455666666667888888765543321 22 233479999999999888776
Q ss_pred EecCC
Q 013184 424 VWDRT 428 (448)
Q Consensus 424 ~~D~~ 428 (448)
..++.
T Consensus 324 d~~G~ 328 (331)
T PF07995_consen 324 DSDGK 328 (331)
T ss_dssp -TTTT
T ss_pred CCCCe
Confidence 65544
No 449
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=90.56 E-value=16 Score=34.71 Aligned_cols=114 Identities=15% Similarity=0.223 Sum_probs=56.4
Q ss_pred EEEEecCCEEEEEeCCC-----eEEEEEcCCCCcee-EEEeecCCCCce-eeEEEEeCCCCCeeEEEEeC-----CCcEE
Q 013184 195 STLAVRDNLLIAGGFQG-----ELICKYLDQPGVSF-CSRTTYDENAIT-NAVEIYNSPSGGIHFMASNN-----DCGVR 262 (448)
Q Consensus 195 ~~l~~~~~~lvsg~~dg-----~i~vw~~~~~~~~~-~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~s~-----dg~v~ 262 (448)
.+++.++.+++.|+.++ .+..+++.+..... ......-..... .+... -+ +.+++.|+. ...+.
T Consensus 67 ~~~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~---~~-~~iYv~GG~~~~~~~~~v~ 142 (323)
T TIGR03548 67 ASVSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY---KD-GTLYVGGGNRNGKPSNKSY 142 (323)
T ss_pred EEEEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE---EC-CEEEEEeCcCCCccCceEE
Confidence 34455788888888754 45556665544311 111111111111 11111 12 335566653 23588
Q ss_pred EEecCCceEEEEeecC--CCeeEEEECCCCCEEEEEecCC----cEEEEECCCCce
Q 013184 263 DFDMERFQLSKHFSFP--WPVNHTSLSPDGKLLVIVGDNP----EGILVDSQTGKA 312 (448)
Q Consensus 263 iwd~~~~~~~~~~~~~--~~v~~~~~sp~~~~l~~~~~d~----~i~i~d~~~~~~ 312 (448)
.||+.+.+....-..+ ......+...++++.+.|+.++ .+.+||+.+.+-
T Consensus 143 ~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 143 LFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred EEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 8898876654332211 1222222333577777777653 356888887653
No 450
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=90.45 E-value=1.7 Score=26.88 Aligned_cols=41 Identities=10% Similarity=0.075 Sum_probs=29.4
Q ss_pred CCCCeeEEEEeCCCcEEEEecCCceEEEEeecCCCeeEEEE
Q 013184 246 PSGGIHFMASNNDCGVRDFDMERFQLSKHFSFPWPVNHTSL 286 (448)
Q Consensus 246 ~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~ 286 (448)
|+++.++++...++.|.++|..+++.+..+........++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 45665666666789999999999988888775444445544
No 451
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.25 E-value=5.2 Score=39.73 Aligned_cols=81 Identities=9% Similarity=0.076 Sum_probs=53.4
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEEccCC--------CcceE---E-------Ecc-CCCCeEEEEEcCCC---CEEE
Q 013184 322 FSFASAWHPDGRIFATGNQDKTCRVWDVRNL--------SKSVA---V-------LKG-NLGAIRSIRFTSDG---NFMA 379 (448)
Q Consensus 322 ~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~--------~~~~~---~-------~~~-~~~~v~~l~~sp~g---~~l~ 379 (448)
.|..+..++.|..++-.+.+|.+.++=.+.+ ++++. + +.. ..-.+..++|+|+. ..|.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 3667788999999999999996554432221 11111 1 111 11246778999976 6788
Q ss_pred EEeCCCeEEEEECCCCceeeeee
Q 013184 380 MAEPADFVHVYDAKNGFEKEQEI 402 (448)
Q Consensus 380 s~~~d~~v~vwd~~~~~~~~~~~ 402 (448)
.-+.|+.|+|||+.....+....
T Consensus 185 iL~sdnviRiy~lS~~telylqp 207 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPTELYLQP 207 (741)
T ss_pred EEecCcEEEEEecCCcchhhccC
Confidence 88899999999998766554433
No 452
>PRK13684 Ycf48-like protein; Provisional
Probab=90.25 E-value=18 Score=34.71 Aligned_cols=147 Identities=14% Similarity=0.114 Sum_probs=77.9
Q ss_pred ceeeEEEEeCCCCCeeEEEEeCCCcEEEE-ecCCceEEEEe-ecCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCcee
Q 013184 236 ITNAVEIYNSPSGGIHFMASNNDCGVRDF-DMERFQLSKHF-SFPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAI 313 (448)
Q Consensus 236 ~~~~v~~~~~~~~~~~l~s~s~dg~v~iw-d~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~ 313 (448)
....+.+ .|++ .++..+..|.+..- +-......... .....++++.+.|+++.++++ ..|.+++-....|..-
T Consensus 174 ~~~~i~~--~~~g--~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW 248 (334)
T PRK13684 174 VVRNLRR--SPDG--KYVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW 248 (334)
T ss_pred eEEEEEE--CCCC--eEEEEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence 3444444 6665 34455555655432 22211122221 245678999999998877665 4566654233444432
Q ss_pred Eeeec----CCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEEEc---cCCCCeEEEEEcCCCCEEEEEeCCCe
Q 013184 314 MPLCG----HLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAVLK---GNLGAIRSIRFTSDGNFMAMAEPADF 386 (448)
Q Consensus 314 ~~l~~----h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~~~v~~l~~sp~g~~l~s~~~d~~ 386 (448)
..... ....++++.+.|++..+++| .+|.+. ..... ++.-.... .-......+.|..+++.+++ +..|.
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~-G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~G~ 324 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDG-GKTWEKDPVGEEVPSNFYKIVFLDPEKGFVL-GQRGV 324 (334)
T ss_pred ccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCC-CCCCeECCcCCCCCcceEEEEEeCCCceEEE-CCCce
Confidence 22221 12347788999988766654 556444 33322 33333332 12235777888776666655 45677
Q ss_pred EEEEE
Q 013184 387 VHVYD 391 (448)
Q Consensus 387 v~vwd 391 (448)
|--|+
T Consensus 325 il~~~ 329 (334)
T PRK13684 325 LLRYV 329 (334)
T ss_pred EEEec
Confidence 76665
No 453
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=89.92 E-value=6 Score=41.42 Aligned_cols=114 Identities=12% Similarity=0.188 Sum_probs=75.9
Q ss_pred CCCeeEEEECC--CCCEEEEEecCCcEEEEECCC-------C----c---------eeEeeecCCCcEEEEEEc--CCCC
Q 013184 278 PWPVNHTSLSP--DGKLLVIVGDNPEGILVDSQT-------G----K---------AIMPLCGHLDFSFASAWH--PDGR 333 (448)
Q Consensus 278 ~~~v~~~~~sp--~~~~l~~~~~d~~i~i~d~~~-------~----~---------~~~~l~~h~~~v~~~~~~--p~g~ 333 (448)
+..|+.+.... ....|+++.+||.|.+|.+++ . . +...+. -...+++++++ ...+
T Consensus 100 PHtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~r 178 (717)
T PF08728_consen 100 PHTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSR 178 (717)
T ss_pred CceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcce
Confidence 34466666554 456788899999999997621 0 0 111121 23467889998 7888
Q ss_pred EEEEEeCCCcEEEEEccCCCcc--eEEEccCCCCeEEEEEcCCC-----C-EEEEEeCCCeEEEEEC
Q 013184 334 IFATGNQDKTCRVWDVRNLSKS--VAVLKGNLGAIRSIRFTSDG-----N-FMAMAEPADFVHVYDA 392 (448)
Q Consensus 334 ~l~s~~~d~~i~iwd~~~~~~~--~~~~~~~~~~v~~l~~sp~g-----~-~l~s~~~d~~v~vwd~ 392 (448)
+||+++....|.||-....... ...-..+...|.+|+|-++. . +|++++-.|.+.+|++
T Consensus 179 lIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 179 LIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 9999999888998876531111 11111255678899997643 2 7888899999999887
No 454
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=89.76 E-value=2 Score=26.50 Aligned_cols=41 Identities=20% Similarity=0.105 Sum_probs=28.6
Q ss_pred CCCCEEEEEe-CCCeEEEEECCCCceeeeeecCcCceEEEEEc
Q 013184 373 SDGNFMAMAE-PADFVHVYDAKNGFEKEQEIDFFGEISGMTFS 414 (448)
Q Consensus 373 p~g~~l~s~~-~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~fs 414 (448)
|+|++|.++. .++.|.++|..++..+..+.. .....+++|+
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v-g~~P~~i~~~ 42 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV-GGYPFGVAVS 42 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC-CCCCceEEeC
Confidence 6788777765 478999999988877766554 3445566653
No 455
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=89.23 E-value=10 Score=30.61 Aligned_cols=112 Identities=17% Similarity=0.062 Sum_probs=62.3
Q ss_pred CEEEEEeCCCeEEEEEcCCCCcee-----EEEeecCCCCceeeEEEE-eCC-CCCeeEEEEeCCCcEEEEecCCceEEEE
Q 013184 202 NLLIAGGFQGELICKYLDQPGVSF-----CSRTTYDENAITNAVEIY-NSP-SGGIHFMASNNDCGVRDFDMERFQLSKH 274 (448)
Q Consensus 202 ~~lvsg~~dg~i~vw~~~~~~~~~-----~~~~~~~~~~~~~~v~~~-~~~-~~~~~l~s~s~dg~v~iwd~~~~~~~~~ 274 (448)
.-|++++.-|.|.|++........ ...+.. -+..+.+++.- +.| .+...|+.|+. ..|..||++...-+..
T Consensus 11 pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~N~d~Fy 88 (136)
T PF14781_consen 11 PCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVENNSDLFY 88 (136)
T ss_pred eeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcccCchhhh
Confidence 357777788888888765432110 111111 12223344321 122 23345666664 6789999998776655
Q ss_pred eecCCCeeEEEECC---CCCEEEEEecCCcEEEEECCCCceeEe
Q 013184 275 FSFPWPVNHTSLSP---DGKLLVIVGDNPEGILVDSQTGKAIMP 315 (448)
Q Consensus 275 ~~~~~~v~~~~~sp---~~~~l~~~~~d~~i~i~d~~~~~~~~~ 315 (448)
.+.+..|+++.+-. ...-++..+.+..|.-+|....+...+
T Consensus 89 ke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 89 KEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWT 132 (136)
T ss_pred hhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEE
Confidence 55677888888743 223455555555777777654444433
No 456
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=89.15 E-value=15 Score=32.36 Aligned_cols=103 Identities=9% Similarity=0.087 Sum_probs=62.5
Q ss_pred CEEEEEecCCcEEEEECC--CCceeEeeecCCCcEEEEEEcCCCCEEEEEeCC---C---cEEEE---Ecc-CCCcceE-
Q 013184 291 KLLVIVGDNPEGILVDSQ--TGKAIMPLCGHLDFSFASAWHPDGRIFATGNQD---K---TCRVW---DVR-NLSKSVA- 357 (448)
Q Consensus 291 ~~l~~~~~d~~i~i~d~~--~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d---~---~i~iw---d~~-~~~~~~~- 357 (448)
+.|+++.....|.+|++. ..+.+.++.. -+.|..+.++..|.||+|--.+ . .+|+| ... ....++.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 445454666789999987 3345566653 4889999999999999987432 2 56665 221 1112221
Q ss_pred EEccC---------------------CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 013184 358 VLKGN---------------------LGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNG 395 (448)
Q Consensus 358 ~~~~~---------------------~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~ 395 (448)
.+-|| ..++.+++..|-.--|+.|+ ++.+.||.+...
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~ 165 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQ 165 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEE
Confidence 12221 22456777777444445554 457899987654
No 457
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=89.02 E-value=21 Score=33.88 Aligned_cols=99 Identities=14% Similarity=0.065 Sum_probs=48.8
Q ss_pred EEEecCCEEEEEeCC-----CeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCC----cEEEEec
Q 013184 196 TLAVRDNLLIAGGFQ-----GELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDC----GVRDFDM 266 (448)
Q Consensus 196 ~l~~~~~~lvsg~~d-----g~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg----~v~iwd~ 266 (448)
+...++++.+.|+.. ..+.++|+.+........+...... .+... .-. +.+++.|+.++ .+.+||+
T Consensus 119 ~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~--~~~~~--~~~-~~iYv~GG~~~~~~~~~~~yd~ 193 (323)
T TIGR03548 119 ACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRV--QPVCV--KLQ-NELYVFGGGSNIAYTDGYKYSP 193 (323)
T ss_pred EEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCC--cceEE--EEC-CEEEEEcCCCCccccceEEEec
Confidence 334588888888852 3577778776664332222111111 11111 123 34667776553 3568888
Q ss_pred CCceEEEEeec---CCCe---eEEE-ECCCCCEEEEEecC
Q 013184 267 ERFQLSKHFSF---PWPV---NHTS-LSPDGKLLVIVGDN 299 (448)
Q Consensus 267 ~~~~~~~~~~~---~~~v---~~~~-~sp~~~~l~~~~~d 299 (448)
++.+....-.. ..+. .+.. ...+++++++|+.+
T Consensus 194 ~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~ 233 (323)
T TIGR03548 194 KKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFN 233 (323)
T ss_pred CCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcC
Confidence 87665432211 1111 1111 22356777777765
No 458
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=88.97 E-value=32 Score=35.88 Aligned_cols=178 Identities=14% Similarity=0.131 Sum_probs=96.5
Q ss_pred CCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCc-EEEEecCCc-----------eE--EEEeecCCCeeEEEE
Q 013184 221 PGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCG-VRDFDMERF-----------QL--SKHFSFPWPVNHTSL 286 (448)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~-v~iwd~~~~-----------~~--~~~~~~~~~v~~~~~ 286 (448)
+..+......-....++.|+.+....++....++|-.++. -++.-++.+ +. ...+.....|..+.+
T Consensus 58 PTPKLiwsypi~pt~iV~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~~~~~~~~~~~e~~~~~~~kl~~kvv~Ik~ 137 (670)
T PF10395_consen 58 PTPKLIWSYPISPTTIVECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKVGSTEDGTVNSETTNEFELKLDDKVVGIKF 137 (670)
T ss_pred CCcceeEeeccCcCceEEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccCccccccccCccccceEEEEcccceEEEEE
Confidence 3334444445556667778877665555556666644433 344433322 11 122336788999999
Q ss_pred CCCCCEEEEEecCCcEEEEECCCCce--eEeeec-CCC-cEEEEEEcC-----C-CCEEEEEeC-C---CcEEEEEccCC
Q 013184 287 SPDGKLLVIVGDNPEGILVDSQTGKA--IMPLCG-HLD-FSFASAWHP-----D-GRIFATGNQ-D---KTCRVWDVRNL 352 (448)
Q Consensus 287 sp~~~~l~~~~~d~~i~i~d~~~~~~--~~~l~~-h~~-~v~~~~~~p-----~-g~~l~s~~~-d---~~i~iwd~~~~ 352 (448)
.++++.+++...+|.|.+||...+.. +..+.. +.. -+++ .|-+ + ..++++-+. . -..+++.+...
T Consensus 138 ~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys-~fv~~~~~~~~~~~ll~v~~~~~~k~~ykL~~l~~~ 216 (670)
T PF10395_consen 138 SSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYS-KFVNDFELENGKDLLLTVSQLSNSKLSYKLISLSNE 216 (670)
T ss_pred ecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehh-hhhcccccccCCceEEEEEEcCCCcEEEEEEEeccC
Confidence 99999999999999999999833221 112221 111 1111 2222 1 234444443 2 24778888333
Q ss_pred CcceEEEc---cCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeeee
Q 013184 353 SKSVAVLK---GNLGAIRSIRFTS-DGNFMAMAEPADFVHVYDAKNGFEKEQE 401 (448)
Q Consensus 353 ~~~~~~~~---~~~~~v~~l~~sp-~g~~l~s~~~d~~v~vwd~~~~~~~~~~ 401 (448)
...+..+. .+.......+|.- +|+...- .++.|.+|++.+.+...++
T Consensus 217 ~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI 267 (670)
T PF10395_consen 217 SSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTI 267 (670)
T ss_pred CcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEE
Confidence 44444443 1222223333332 4543333 6779999999887655443
No 459
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=88.79 E-value=2.5 Score=37.72 Aligned_cols=67 Identities=16% Similarity=0.189 Sum_probs=48.4
Q ss_pred EcCCCCEEEEEeCCCcEEEEEccCCCcceEE------Ec-------cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 013184 328 WHPDGRIFATGNQDKTCRVWDVRNLSKSVAV------LK-------GNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKN 394 (448)
Q Consensus 328 ~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~------~~-------~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~ 394 (448)
+..++.++++-..+|.+++||+.+....+.. +. .....|..+.++.+|.-|++-+ +|..+.|+..-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 4457889999999999999999863221111 11 2446788999999998777655 56789998665
Q ss_pred C
Q 013184 395 G 395 (448)
Q Consensus 395 ~ 395 (448)
+
T Consensus 97 ~ 97 (219)
T PF07569_consen 97 G 97 (219)
T ss_pred c
Confidence 4
No 460
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=88.76 E-value=26 Score=34.60 Aligned_cols=148 Identities=9% Similarity=0.054 Sum_probs=86.5
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCce-eEEEeecCCCCceeeEEEEe-CCC-CCeeEEEEeCCCcEEEEecCC---------
Q 013184 201 DNLLIAGGFQGELICKYLDQPGVS-FCSRTTYDENAITNAVEIYN-SPS-GGIHFMASNNDCGVRDFDMER--------- 268 (448)
Q Consensus 201 ~~~lvsg~~dg~i~vw~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~-~~~~l~s~s~dg~v~iwd~~~--------- 268 (448)
...+++|+..|.++|+.....+.. ....+...-..++-.+..-. .+. ....|++ =.-..+.+|.+..
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccCc
Confidence 468999999999999998655422 11222223333444443321 121 2223333 3456677776621
Q ss_pred -ceEEEEeec--CCCeeEEEECC----C-CCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeC
Q 013184 269 -FQLSKHFSF--PWPVNHTSLSP----D-GKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQ 340 (448)
Q Consensus 269 -~~~~~~~~~--~~~v~~~~~sp----~-~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~ 340 (448)
.++...++| +.....+++-| . ...+.+-+.||.+.+++-+.-...+.+.. .--.-.+++.|....|++++.
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~ss 194 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASS 194 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecC
Confidence 122233333 33333444433 2 35788889999999999766554444443 222235688888889999999
Q ss_pred CCcEEEEEcc
Q 013184 341 DKTCRVWDVR 350 (448)
Q Consensus 341 d~~i~iwd~~ 350 (448)
+..+..|...
T Consensus 195 s~~l~~Yky~ 204 (418)
T PF14727_consen 195 SWTLECYKYQ 204 (418)
T ss_pred ceeEEEecHH
Confidence 9888888753
No 461
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=87.78 E-value=32 Score=34.78 Aligned_cols=143 Identities=17% Similarity=0.130 Sum_probs=69.1
Q ss_pred CCCcEEEEecCCceEEEEeecCC-CeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCc---EEEEEEcCCC
Q 013184 257 NDCGVRDFDMERFQLSKHFSFPW-PVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDF---SFASAWHPDG 332 (448)
Q Consensus 257 ~dg~v~iwd~~~~~~~~~~~~~~-~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~---v~~~~~~p~g 332 (448)
......++|.. |.++..+.... ....+...++|.+++..+ ..+..+|.. |+.+......... -..+..-|+|
T Consensus 126 ~~~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nG 201 (477)
T PF05935_consen 126 SSSYTYLIDNN-GDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNG 201 (477)
T ss_dssp BEEEEEEEETT-S-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS
T ss_pred CCceEEEECCC-ccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCC
Confidence 45667777764 55555555221 111266778898887655 678888864 6655544322211 2356778999
Q ss_pred CEEEEEe--------------CCC---------cEEEEEccCCCcceEE----------Ecc---CC--CCeEEEEEcC-
Q 013184 333 RIFATGN--------------QDK---------TCRVWDVRNLSKSVAV----------LKG---NL--GAIRSIRFTS- 373 (448)
Q Consensus 333 ~~l~s~~--------------~d~---------~i~iwd~~~~~~~~~~----------~~~---~~--~~v~~l~~sp- 373 (448)
++|+.+. .|. .+..||+..--.+... ..+ .. --++++.+.+
T Consensus 202 n~L~l~~~~~~~~~~~~~~~~~D~Ivevd~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~ 281 (477)
T PF05935_consen 202 NLLILASETKYVDEDKDVDTVEDVIVEVDPTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPS 281 (477)
T ss_dssp -EEEEEEETTEE-TS-EE---S-EEEEE-TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETT
T ss_pred CEEEEEeecccccCCCCccEecCEEEEECCCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCC
Confidence 9888777 121 2344554321101111 000 00 1478999998
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeeeeec
Q 013184 374 DGNFMAMAEPADFVHVYDAKNGFEKEQEID 403 (448)
Q Consensus 374 ~g~~l~s~~~d~~v~vwd~~~~~~~~~~~~ 403 (448)
++.+|+++-.-..|...|..+++....+..
T Consensus 282 dd~iivSsR~~s~V~~Id~~t~~i~Wilg~ 311 (477)
T PF05935_consen 282 DDSIIVSSRHQSAVIKIDYRTGKIKWILGP 311 (477)
T ss_dssp TTEEEEEETTT-EEEEEE-TTS-EEEEES-
T ss_pred CCeEEEEcCcceEEEEEECCCCcEEEEeCC
Confidence 555666655556899999877766554443
No 462
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.12 E-value=14 Score=36.26 Aligned_cols=104 Identities=13% Similarity=0.095 Sum_probs=70.6
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCc---ceEEEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 013184 319 HLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSK---SVAVLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNG 395 (448)
Q Consensus 319 h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~---~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~ 395 (448)
..++|.++.|++|.+.+|.-..+++|.+++...... ...+.+.....|....|+.+ +-+|.-...| +-+|-+...
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pe 142 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPE 142 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchh
Confidence 456899999999999999999999999998743111 12233334456889999876 5666666555 667765443
Q ss_pred c-eeeeeecCcCceEEEEEccCCCeEEEEE
Q 013184 396 F-EKEQEIDFFGEISGMTFSPDTEALFIGV 424 (448)
Q Consensus 396 ~-~~~~~~~~~~~v~~~~fspdg~~L~~~~ 424 (448)
+ .++....|.-.|.=..|.|+.+.++.++
T Consensus 143 krslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 143 KRSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred hhhhhhhhhcccCccEEEEccccceEeeec
Confidence 3 2233445666777788888877655443
No 463
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=86.70 E-value=5.1 Score=41.32 Aligned_cols=77 Identities=13% Similarity=0.163 Sum_probs=45.1
Q ss_pred cCCEEEEEeCCCeEEEEEcCC---CCceeEEEeecC--------------------CCCceeeEEEEeC-CCCCeeEEEE
Q 013184 200 RDNLLIAGGFQGELICKYLDQ---PGVSFCSRTTYD--------------------ENAITNAVEIYNS-PSGGIHFMAS 255 (448)
Q Consensus 200 ~~~~lvsg~~dg~i~vw~~~~---~~~~~~~~~~~~--------------------~~~~~~~v~~~~~-~~~~~~l~s~ 255 (448)
+...++.+..||.+....... .+.......... .......+.+... -++..++++.
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 788899999999998888765 221111111110 1123333433211 1244589999
Q ss_pred eCCCcEEEEecCCceEEEEee
Q 013184 256 NNDCGVRDFDMERFQLSKHFS 276 (448)
Q Consensus 256 s~dg~v~iwd~~~~~~~~~~~ 276 (448)
+.|+++|+||+.+++++....
T Consensus 237 ~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 237 SRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp ETTSEEEEEETTTTCEEEEEE
T ss_pred eCCCeEEEEECCCCeEEEEec
Confidence 999999999999999976654
No 464
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=86.65 E-value=27 Score=34.89 Aligned_cols=60 Identities=18% Similarity=0.247 Sum_probs=39.7
Q ss_pred eecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCC-cceEEE----c-cCCCCeEEEEEcCCC
Q 013184 316 LCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLS-KSVAVL----K-GNLGAIRSIRFTSDG 375 (448)
Q Consensus 316 l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~-~~~~~~----~-~~~~~v~~l~~sp~g 375 (448)
+.........++|.|+|++|++-...|.|++++..... ..+..+ . ...+....|+++|+-
T Consensus 25 va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 25 LLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred EECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 33345667899999999888776657999999764311 122111 1 135668899999874
No 465
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=86.65 E-value=3 Score=25.42 Aligned_cols=33 Identities=18% Similarity=0.352 Sum_probs=20.9
Q ss_pred EEccCCCCeEEEEEcCCCCEEEEEeCC---CeEEEE
Q 013184 358 VLKGNLGAIRSIRFTSDGNFMAMAEPA---DFVHVY 390 (448)
Q Consensus 358 ~~~~~~~~v~~l~~sp~g~~l~s~~~d---~~v~vw 390 (448)
.+....+......|||||++|+.++.. |.-.||
T Consensus 3 ~~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 3 QLTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp EES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CcccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 344455667889999999988876543 444444
No 466
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=86.61 E-value=28 Score=32.55 Aligned_cols=170 Identities=16% Similarity=0.215 Sum_probs=88.7
Q ss_pred eEEEEEcCCCCceeEEEeecC---CCCceeeEEEEeCCCC---CeeEEEEeCCCcEEEEecCCceEEEEee---------
Q 013184 212 ELICKYLDQPGVSFCSRTTYD---ENAITNAVEIYNSPSG---GIHFMASNNDCGVRDFDMERFQLSKHFS--------- 276 (448)
Q Consensus 212 ~i~vw~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~---~~~l~s~s~dg~v~iwd~~~~~~~~~~~--------- 276 (448)
.|.+||+.+.+......+... .....+.+.+-..+.. ....++=+..+.|.|+|+.+++..+...
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 566777777764433333221 2344455555333221 2334444455689999999877554433
Q ss_pred -----------cCCCeeEEEECC---CCCEEEEEecCC-cEEEEEC---CCCc---------eeEeeecCCCcEEEEEEc
Q 013184 277 -----------FPWPVNHTSLSP---DGKLLVIVGDNP-EGILVDS---QTGK---------AIMPLCGHLDFSFASAWH 329 (448)
Q Consensus 277 -----------~~~~v~~~~~sp---~~~~l~~~~~d~-~i~i~d~---~~~~---------~~~~l~~h~~~v~~~~~~ 329 (448)
....+..++.+| +++.|+...-.+ .+.-... +... .+..+-........++.+
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D 194 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAID 194 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEEC
Confidence 223366666655 566666555332 2222211 1111 112221112355678899
Q ss_pred CCCCEEEEEeCCCcEEEEEccCCC--cceEEEc--cC-CCCeEEEEEcC--CCCEEEEE
Q 013184 330 PDGRIFATGNQDKTCRVWDVRNLS--KSVAVLK--GN-LGAIRSIRFTS--DGNFMAMA 381 (448)
Q Consensus 330 p~g~~l~s~~~d~~i~iwd~~~~~--~~~~~~~--~~-~~~v~~l~~sp--~g~~l~s~ 381 (448)
++|.++++--..+.|..|+....- ..+..+. .. ...+..+++.+ +|.+-+.+
T Consensus 195 ~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 195 PNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp TTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred CCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 999999998899999999987411 1222222 22 45778899988 66655544
No 467
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=86.34 E-value=5.6 Score=42.53 Aligned_cols=90 Identities=16% Similarity=0.113 Sum_probs=62.7
Q ss_pred CCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEE-EeCCC-----cEEEEEccCCCcceEEEccCC
Q 013184 290 GKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFAT-GNQDK-----TCRVWDVRNLSKSVAVLKGNL 363 (448)
Q Consensus 290 ~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s-~~~d~-----~i~iwd~~~~~~~~~~~~~~~ 363 (448)
+++.++.-..+.+.+-|.........-..+..++.+-+|||||+.||- .+..+ .|.+-++++.+.-+..+.-..
T Consensus 319 tkiAfv~~~~~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~ 398 (912)
T TIGR02171 319 AKLAFRNDVTGNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVEN 398 (912)
T ss_pred eeEEEEEcCCCeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeeccc
Confidence 334433333457888887665544330346888999999999999987 44333 488889987666667777778
Q ss_pred CCeEEEEEcCCCCEEE
Q 013184 364 GAIRSIRFTSDGNFMA 379 (448)
Q Consensus 364 ~~v~~l~~sp~g~~l~ 379 (448)
..|..-+...+|..++
T Consensus 399 aaiprwrv~e~gdt~i 414 (912)
T TIGR02171 399 AAIPRWRVLENGDTVI 414 (912)
T ss_pred ccccceEecCCCCeEE
Confidence 8888888888886443
No 468
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=86.13 E-value=33 Score=32.90 Aligned_cols=29 Identities=14% Similarity=0.171 Sum_probs=18.7
Q ss_pred EEEEecCCEEEEEeCCC-----------eEEEEEcCCCCc
Q 013184 195 STLAVRDNLLIAGGFQG-----------ELICKYLDQPGV 223 (448)
Q Consensus 195 ~~l~~~~~~lvsg~~dg-----------~i~vw~~~~~~~ 223 (448)
.....++++.+.|+... .+.+||..+...
T Consensus 58 ~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W 97 (346)
T TIGR03547 58 VAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSW 97 (346)
T ss_pred eEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEE
Confidence 34445888999998642 355677666553
No 469
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=86.02 E-value=37 Score=33.40 Aligned_cols=108 Identities=14% Similarity=0.045 Sum_probs=63.5
Q ss_pred cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCc-----eeEeeec--CCCcEEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 013184 277 FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGK-----AIMPLCG--HLDFSFASAWHPDGRIFATGNQDKTCRVWDV 349 (448)
Q Consensus 277 ~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~-----~~~~l~~--h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~ 349 (448)
....+..+.+.+++.+++++ ..|.+. +....++ ....+.. -...+.++.+.+++..+++| ..|.+....-
T Consensus 279 ~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~D 355 (398)
T PLN00033 279 SARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRSTD 355 (398)
T ss_pred CccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeCC
Confidence 45678899999998877665 445443 3344443 2222221 12347889999887766655 5665554432
Q ss_pred cCCCcceEEEc---cCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 013184 350 RNLSKSVAVLK---GNLGAIRSIRFTSDGNFMAMAEPADFVHVY 390 (448)
Q Consensus 350 ~~~~~~~~~~~---~~~~~v~~l~~sp~g~~l~s~~~d~~v~vw 390 (448)
.++.-.... .-...++.+.|.++++-+++| .+|.|.-|
T Consensus 356 --~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 356 --GGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLRY 396 (398)
T ss_pred --CCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEEe
Confidence 244333322 224568899998877766665 56665443
No 470
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=85.55 E-value=55 Score=34.96 Aligned_cols=34 Identities=15% Similarity=0.158 Sum_probs=28.7
Q ss_pred CCCeeEEEECCC---CCEEEEEecCCcEEEEECCCCc
Q 013184 278 PWPVNHTSLSPD---GKLLVIVGDNPEGILVDSQTGK 311 (448)
Q Consensus 278 ~~~v~~~~~sp~---~~~l~~~~~d~~i~i~d~~~~~ 311 (448)
...|..+.|+|. +..|++-..|+.+++||+...+
T Consensus 146 ~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 146 SLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred CceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence 456889999995 6899999999999999997543
No 471
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=85.49 E-value=18 Score=34.48 Aligned_cols=103 Identities=18% Similarity=0.210 Sum_probs=63.7
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCc------EEEEEccCCC---cce-----EEEccCCC--------CeEEEEEcCCCCE
Q 013184 320 LDFSFASAWHPDGRIFATGNQDKT------CRVWDVRNLS---KSV-----AVLKGNLG--------AIRSIRFTSDGNF 377 (448)
Q Consensus 320 ~~~v~~~~~~p~g~~l~s~~~d~~------i~iwd~~~~~---~~~-----~~~~~~~~--------~v~~l~~sp~g~~ 377 (448)
-+....+.+.|++..+++.+.++. +....+.... ..+ ..+....+ ..-+|++.++|.+
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 355677888865555666666666 4444443200 111 11222222 2337888889999
Q ss_pred EEEEeCC------CeEEEEECCCCceeeee--e-------------cCcCceEEEEEccCCCeEEEE
Q 013184 378 MAMAEPA------DFVHVYDAKNGFEKEQE--I-------------DFFGEISGMTFSPDTEALFIG 423 (448)
Q Consensus 378 l~s~~~d------~~v~vwd~~~~~~~~~~--~-------------~~~~~v~~~~fspdg~~L~~~ 423 (448)
+++...+ -.|+-++.. |.....+ . ......-+|+++|+|+.|+++
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~ 164 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA 164 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence 9998888 889999966 5544332 1 123458899999999977776
No 472
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=85.33 E-value=1.5 Score=46.07 Aligned_cols=100 Identities=13% Similarity=0.115 Sum_probs=56.7
Q ss_pred eEEEEeCCCcEEEEecCCceEEEEee-cCCC-----------eeEEEECCCCCEEEEEecCCcEEEEECC-----CCcee
Q 013184 251 HFMASNNDCGVRDFDMERFQLSKHFS-FPWP-----------VNHTSLSPDGKLLVIVGDNPEGILVDSQ-----TGKAI 313 (448)
Q Consensus 251 ~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~-----------v~~~~~sp~~~~l~~~~~d~~i~i~d~~-----~~~~~ 313 (448)
++..+-.++.+++....+... ..+. |... +.--.+||||+.++.++.||.++.|.+. ..+++
T Consensus 197 ~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rcl 275 (1283)
T KOG1916|consen 197 YICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCL 275 (1283)
T ss_pred eeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhh
Confidence 555566678888776654221 1111 3222 2223379999999999999998888653 33455
Q ss_pred EeeecCCCc-EEEEEEcCCC---------CEEEEEe-CCCcEEEEEccC
Q 013184 314 MPLCGHLDF-SFASAWHPDG---------RIFATGN-QDKTCRVWDVRN 351 (448)
Q Consensus 314 ~~l~~h~~~-v~~~~~~p~g---------~~l~s~~-~d~~i~iwd~~~ 351 (448)
+..+.|.+. -.|.-++.+. .++++++ ....+++|....
T Consensus 276 hewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~ 324 (1283)
T KOG1916|consen 276 HEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAP 324 (1283)
T ss_pred hccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccc
Confidence 566666632 2222233221 1334443 456688998754
No 473
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=85.22 E-value=35 Score=32.81 Aligned_cols=142 Identities=18% Similarity=0.128 Sum_probs=73.4
Q ss_pred CCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCC-----CcEEEEEEcCCCCEEEE----------------
Q 013184 279 WPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHL-----DFSFASAWHPDGRIFAT---------------- 337 (448)
Q Consensus 279 ~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~-----~~v~~~~~~p~g~~l~s---------------- 337 (448)
+....++|...+.-|+++..---+...+...++.. .+..+. .....+..+|+|....|
T Consensus 115 GRPLGl~f~~~ggdL~VaDAYlGL~~V~p~g~~a~-~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~~~a~l 193 (376)
T KOG1520|consen 115 GRPLGIRFDKKGGDLYVADAYLGLLKVGPEGGLAE-LLADEAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDRRDFVFAAL 193 (376)
T ss_pred CCcceEEeccCCCeEEEEecceeeEEECCCCCcce-eccccccCeeeeecCceeEcCCCeEEEeccccccchhheEEeee
Confidence 44567888887755666554444555555444311 111111 11223344444433222
Q ss_pred -EeCCCcEEEEEccCCCcceEEEccCCCCeEEEEEcCCCCEEEEEeCC-CeEEEEECCCCce--eeee-ecCcCceEEEE
Q 013184 338 -GNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGNFMAMAEPA-DFVHVYDAKNGFE--KEQE-IDFFGEISGMT 412 (448)
Q Consensus 338 -~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d-~~v~vwd~~~~~~--~~~~-~~~~~~v~~~~ 412 (448)
+..+|.+--||.. .+...++.....-.+.++.||++.+++.+..- ..|+=|=+...+. ...+ .+..+..-.|.
T Consensus 194 ~g~~~GRl~~YD~~--tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g~k~gt~EvFa~~LPG~PDNIR 271 (376)
T KOG1520|consen 194 EGDPTGRLFRYDPS--TKVTKVLLDGLYFPNGLALSPDGSFVLVAETTTARIKRYWIKGPKAGTSEVFAEGLPGYPDNIR 271 (376)
T ss_pred cCCCccceEEecCc--ccchhhhhhcccccccccCCCCCCEEEEEeeccceeeeeEecCCccCchhhHhhcCCCCCccee
Confidence 2245666667764 34455555555556789999999999988643 2343333332221 0111 12445566777
Q ss_pred EccCCCeEEEE
Q 013184 413 FSPDTEALFIG 423 (448)
Q Consensus 413 fspdg~~L~~~ 423 (448)
-+++|.+-+.-
T Consensus 272 ~~~~G~fWVal 282 (376)
T KOG1520|consen 272 RDSTGHFWVAL 282 (376)
T ss_pred ECCCCCEEEEE
Confidence 78888665543
No 474
>PLN02193 nitrile-specifier protein
Probab=84.86 E-value=44 Score=33.77 Aligned_cols=116 Identities=9% Similarity=0.010 Sum_probs=57.8
Q ss_pred EEEEecCCEEEEEeCCC-----eEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCC-----cEEEE
Q 013184 195 STLAVRDNLLIAGGFQG-----ELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDC-----GVRDF 264 (448)
Q Consensus 195 ~~l~~~~~~lvsg~~dg-----~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg-----~v~iw 264 (448)
.....++.+++.|+.++ .+.++|+.+..................+... ..+..+++.|+.++ .+..|
T Consensus 223 ~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~---~~~~~iYv~GG~~~~~~~~~~~~y 299 (470)
T PLN02193 223 RMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMA---ADEENVYVFGGVSATARLKTLDSY 299 (470)
T ss_pred EEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEE---EECCEEEEECCCCCCCCcceEEEE
Confidence 33445888888888764 4667777665433221110001111111111 11344666666543 46778
Q ss_pred ecCCceEEEEeec----CCCeeEEEECCCCCEEEEEecC----CcEEEEECCCCcee
Q 013184 265 DMERFQLSKHFSF----PWPVNHTSLSPDGKLLVIVGDN----PEGILVDSQTGKAI 313 (448)
Q Consensus 265 d~~~~~~~~~~~~----~~~v~~~~~sp~~~~l~~~~~d----~~i~i~d~~~~~~~ 313 (448)
|+.+.+....-.. ..........-++++++.++.+ ..+.+||+.+.+-.
T Consensus 300 d~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~ 356 (470)
T PLN02193 300 NIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWT 356 (470)
T ss_pred ECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEE
Confidence 8877664432110 0000111111256777777754 46889998877643
No 475
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=84.74 E-value=8.3 Score=34.43 Aligned_cols=78 Identities=12% Similarity=0.049 Sum_probs=48.3
Q ss_pred eeEEEEecCCEEEEEeCCCeEEEEEcCCCCceeEE----Eeec-------CCCCceeeEEEEeCCCCCeeEEEEeCCCcE
Q 013184 193 QVSTLAVRDNLLIAGGFQGELICKYLDQPGVSFCS----RTTY-------DENAITNAVEIYNSPSGGIHFMASNNDCGV 261 (448)
Q Consensus 193 ~i~~l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~----~~~~-------~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v 261 (448)
++..|...+++|++-+.+|.+++||+.+.+..... .+.. .....+..+.+ ..+|. -+++-+ +|..
T Consensus 14 ~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~l--t~~G~-PiV~ls-ng~~ 89 (219)
T PF07569_consen 14 PVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSL--TSNGV-PIVTLS-NGDS 89 (219)
T ss_pred ceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEE--cCCCC-EEEEEe-CCCE
Confidence 56778889999999999999999999887633211 1111 12222333334 56665 344444 4677
Q ss_pred EEEecCCceEEEE
Q 013184 262 RDFDMERFQLSKH 274 (448)
Q Consensus 262 ~iwd~~~~~~~~~ 274 (448)
+.|+..-+..+..
T Consensus 90 y~y~~~L~~W~~v 102 (219)
T PF07569_consen 90 YSYSPDLGCWIRV 102 (219)
T ss_pred EEeccccceeEEe
Confidence 8887765554443
No 476
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=84.70 E-value=22 Score=33.01 Aligned_cols=93 Identities=24% Similarity=0.441 Sum_probs=58.7
Q ss_pred CcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEe------CCCcEEEEEccCCCcceEEEccC-----CCCeEE
Q 013184 300 PEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGN------QDKTCRVWDVRNLSKSVAVLKGN-----LGAIRS 368 (448)
Q Consensus 300 ~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~------~d~~i~iwd~~~~~~~~~~~~~~-----~~~v~~ 368 (448)
..|.+||..+.+-...-.+-.+.|.++.|..+.++++.|. ....+-.||..+ .....+.+. .++|..
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~--~~w~~~~~~~s~~ipgpv~a 93 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKN--QTWSSLGGGSSNSIPGPVTA 93 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCC--CeeeecCCcccccCCCcEEE
Confidence 4688999887776555555667899999987777777774 345688899864 334444442 367877
Q ss_pred EEEcC-CC-CEEEEEe-C--CCeEEEEECCC
Q 013184 369 IRFTS-DG-NFMAMAE-P--ADFVHVYDAKN 394 (448)
Q Consensus 369 l~~sp-~g-~~l~s~~-~--d~~v~vwd~~~ 394 (448)
+.+.. ++ ++.+.|. . ...|..||=.+
T Consensus 94 ~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~ 124 (281)
T PF12768_consen 94 LTFISNDGSNFWVAGRSANGSTFLMKYDGSS 124 (281)
T ss_pred EEeeccCCceEEEeceecCCCceEEEEcCCc
Confidence 77743 33 3444443 2 23577776433
No 477
>PRK13615 lipoprotein LpqB; Provisional
Probab=84.43 E-value=45 Score=34.37 Aligned_cols=138 Identities=12% Similarity=0.043 Sum_probs=82.1
Q ss_pred eEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceEE-Ec
Q 013184 282 NHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVAV-LK 360 (448)
Q Consensus 282 ~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~-~~ 360 (448)
.+++.++++..++....++.+.++... +.....+. ...+..-.|.++| .+.+.-.....++......+..... ..
T Consensus 337 ~s~avS~dg~~~A~v~~~~~l~vg~~~-~~~~~~~~--~~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G~~~~v~v~ 412 (557)
T PRK13615 337 DAATLSADGRQAAVRNASGVWSVGDGD-RDAVLLDT--RPGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDGVGHPVAVS 412 (557)
T ss_pred ccceEcCCCceEEEEcCCceEEEecCC-Ccceeecc--CCccccCcCcCCC-CEEEEeCCCceEEEEecCCCceEEeecc
Confidence 688999999999988777777776544 22222232 2345667788887 6666655444555554332332211 11
Q ss_pred c-CCCCeEEEEEcCCCCEEEEEeC---CCeEEEEECCC-Cc---ee----eeeecCcCceEEEEEccCCCeEEEE
Q 013184 361 G-NLGAIRSIRFTSDGNFMAMAEP---ADFVHVYDAKN-GF---EK----EQEIDFFGEISGMTFSPDTEALFIG 423 (448)
Q Consensus 361 ~-~~~~v~~l~~sp~g~~l~s~~~---d~~v~vwd~~~-~~---~~----~~~~~~~~~v~~~~fspdg~~L~~~ 423 (448)
. -.+.|..++.|+||-.++.-.. .+.|.|--+.. +. .+ ..+..-.+.+.+++|..++...+.+
T Consensus 413 ~~~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~l~~v~sl~W~~~~~laVl~ 487 (557)
T PRK13615 413 WTATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTPLELLASPGTPLDATWVDELDVATLT 487 (557)
T ss_pred ccCCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeeeccEEcccCcCcceeeEEcCCCEEEEEe
Confidence 1 2357999999999976666432 34565533221 22 12 1111123488999999998876666
No 478
>PLN02153 epithiospecifier protein
Probab=84.12 E-value=40 Score=32.24 Aligned_cols=115 Identities=15% Similarity=0.119 Sum_probs=56.3
Q ss_pred eEEEEecCCEEEEEeCCC-----eEEEEEcCCCCceeEEEeecC--CCCcee-eEEEEeCCCCCeeEEEEeCC-------
Q 013184 194 VSTLAVRDNLLIAGGFQG-----ELICKYLDQPGVSFCSRTTYD--ENAITN-AVEIYNSPSGGIHFMASNND------- 258 (448)
Q Consensus 194 i~~l~~~~~~lvsg~~dg-----~i~vw~~~~~~~~~~~~~~~~--~~~~~~-~v~~~~~~~~~~~l~s~s~d------- 258 (448)
..+.+.++++++.||.++ .+.++|+.+........+... ...... ++.+ -+ +.+++.|+.+
T Consensus 79 ~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~---~~-~~iyv~GG~~~~~~~~~ 154 (341)
T PLN02153 79 VRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMAS---DE-NHVYVFGGVSKGGLMKT 154 (341)
T ss_pred eEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEE---EC-CEEEEECCccCCCccCC
Confidence 344555888889988643 466777766543322111000 001111 1111 12 3466666643
Q ss_pred ----CcEEEEecCCceEEEEeecC----CCe-eEEEECCCCCEEEEEecC-------------CcEEEEECCCCcee
Q 013184 259 ----CGVRDFDMERFQLSKHFSFP----WPV-NHTSLSPDGKLLVIVGDN-------------PEGILVDSQTGKAI 313 (448)
Q Consensus 259 ----g~v~iwd~~~~~~~~~~~~~----~~v-~~~~~sp~~~~l~~~~~d-------------~~i~i~d~~~~~~~ 313 (448)
..|.+||+++.+....-... ..- .+++. -+++++++++.+ ..+.+||+.+.+-.
T Consensus 155 ~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~ 230 (341)
T PLN02153 155 PERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWT 230 (341)
T ss_pred CcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCCcEE
Confidence 24778888876654321111 111 11221 256666665532 45888998876543
No 479
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=83.30 E-value=76 Score=34.77 Aligned_cols=229 Identities=14% Similarity=0.131 Sum_probs=113.3
Q ss_pred ceeeEEEEecCCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCC---CeeEEEEeCCCcEEEEecC
Q 013184 191 QTQVSTLAVRDNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSG---GIHFMASNNDCGVRDFDME 267 (448)
Q Consensus 191 ~~~i~~l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~s~s~dg~v~iwd~~ 267 (448)
+.+|...+++...+|.+-..|.+.-+..+..+..............+.|+++...+.| .+.++.++.|+.++++.+.
T Consensus 539 ~~~Iv~~avnr~qiVvalSngelvyfe~d~sgql~E~~er~tl~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~ 618 (1205)
T KOG1898|consen 539 RVRIVKCAVNRRQIVVALSNGELVYFEGDVSGQLNEFTERVTLSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLD 618 (1205)
T ss_pred ceEEEEEeecceEEEEEccCCeEEEEEeccCccceeeeeeeeeceeehhhccCCCCcchhhcceeeeeccccceeEEEec
Confidence 3467777778888999999999887776644322222222233445566666544433 3468999999999999987
Q ss_pred CceEEEEee---cCCCeeEEEECC---CCC------EEEEEecCCcEEE--EECCCCceeEe---eecCCCcE--EEEEE
Q 013184 268 RFQLSKHFS---FPWPVNHTSLSP---DGK------LLVIVGDNPEGIL--VDSQTGKAIMP---LCGHLDFS--FASAW 328 (448)
Q Consensus 268 ~~~~~~~~~---~~~~v~~~~~sp---~~~------~l~~~~~d~~i~i--~d~~~~~~~~~---l~~h~~~v--~~~~~ 328 (448)
....+..+. .+.++.++.+-+ .+. +|.+|-.+|.+.- .|..+|+..-. +-| ..+| +.+..
T Consensus 619 p~d~l~~ls~q~l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL~NGvllR~~id~v~G~l~d~rtR~lG-~~pvkLf~~~~ 697 (1205)
T KOG1898|consen 619 PSDCLQPLSVQGLSSPPESLCIVEMEATGGTDVAQLYLLIGLRNGVLLRFVIDTVTGQLLDIRTRFLG-LRPVKLFPISM 697 (1205)
T ss_pred CcceEEEccccccCCCccceEEEEecccCCccceeEEEEecccccEEEEEEecccccceeeeheeeec-cccceEEEEee
Confidence 655555554 344555544432 221 3344545554432 24444532211 111 1222 22333
Q ss_pred cCCCCEEEEEeCCCcEEEEEccCCCcceEEEc----cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC-cee-eeee
Q 013184 329 HPDGRIFATGNQDKTCRVWDVRNLSKSVAVLK----GNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNG-FEK-EQEI 402 (448)
Q Consensus 329 ~p~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~----~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~-~~~-~~~~ 402 (448)
.-+...|+..+.+. .+|+.+. ......+. .|.+++.+-. +|.|- +. ...+.+++.-+... ... .+..
T Consensus 698 ~~~s~vL~lSsr~w--l~y~~~~-~~h~t~Isy~~l~~as~~~S~q-cpeGi--v~-i~~n~l~i~~~~~~g~~~n~~~~ 770 (1205)
T KOG1898|consen 698 RGQSDVLALSSRPW--LLYTYQQ-EFHLTPISYSTLEHASPFCSEQ-CPEGI--VA-ISKNTLRIIALDKLGKVLNVDGF 770 (1205)
T ss_pred cCcceeEEecCChh--hhhhhcc-eeeeecccccchhccccccccC-CCcch--hh-hhhhhhheeeehhhccccccccc
Confidence 33344555554443 2233221 11111111 1222221111 12221 11 11223444433322 211 2333
Q ss_pred cCcCceEEEEEccCCCeEEEEEecC
Q 013184 403 DFFGEISGMTFSPDTEALFIGVWDR 427 (448)
Q Consensus 403 ~~~~~v~~~~fspdg~~L~~~~~D~ 427 (448)
.+...+..++.+|....|+++-.|.
T Consensus 771 ~l~~tprkvv~h~es~lLii~~td~ 795 (1205)
T KOG1898|consen 771 PLAYTPRKVVIHPESGLLIIGRTDH 795 (1205)
T ss_pred ccccCcceEEEecCCCeEEEEEecc
Confidence 4566778888999888888876553
No 480
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.87 E-value=16 Score=40.59 Aligned_cols=136 Identities=17% Similarity=0.232 Sum_probs=82.1
Q ss_pred eCCCcEEEEecCCceEEEEee-cCCCeeEEEE--------CCCCCEEEEEecCCcEEEEECC----CCce---e--Eeee
Q 013184 256 NNDCGVRDFDMERFQLSKHFS-FPWPVNHTSL--------SPDGKLLVIVGDNPEGILVDSQ----TGKA---I--MPLC 317 (448)
Q Consensus 256 s~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~--------sp~~~~l~~~~~d~~i~i~d~~----~~~~---~--~~l~ 317 (448)
+.|..+.+|+.+++.....+. ....|..+.. -|.=+++++.+.--.|.|+-+. ++.. . .++.
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 447889999998865544444 3344444433 2233455555555556665332 2211 1 1222
Q ss_pred cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEccC----C---C----------------cceEEEc-cCCCCeEEEEEcC
Q 013184 318 GHLDFSFASAWHPDGRIFATGNQDKTCRVWDVRN----L---S----------------KSVAVLK-GNLGAIRSIRFTS 373 (448)
Q Consensus 318 ~h~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~----~---~----------------~~~~~~~-~~~~~v~~l~~sp 373 (448)
...-.|.++....+|+.|.+|..+ .||.+-- + . ..+..+. .+..+|..+....
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G~dg---~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~ 252 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAGRDG---NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN 252 (1311)
T ss_pred cCCceEEEEEeccCCcEEEeecCC---CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc
Confidence 234567888888899988876555 4454321 0 0 0112223 4566899999988
Q ss_pred CCCEEEEEeCCCeEEEEECCC
Q 013184 374 DGNFMAMAEPADFVHVYDAKN 394 (448)
Q Consensus 374 ~g~~l~s~~~d~~v~vwd~~~ 394 (448)
....|.+-+..++|.+|++..
T Consensus 253 SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 253 SRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ccceeeeeccCceEEEEEccC
Confidence 888899999999999999976
No 481
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.73 E-value=10 Score=37.80 Aligned_cols=72 Identities=19% Similarity=0.297 Sum_probs=48.5
Q ss_pred CeeEEEECCCCCEEEEEecCCcEEEEEC---------CCCceeEeee-----------cCCCcEEEEEEcCCC---CEEE
Q 013184 280 PVNHTSLSPDGKLLVIVGDNPEGILVDS---------QTGKAIMPLC-----------GHLDFSFASAWHPDG---RIFA 336 (448)
Q Consensus 280 ~v~~~~~sp~~~~l~~~~~d~~i~i~d~---------~~~~~~~~l~-----------~h~~~v~~~~~~p~g---~~l~ 336 (448)
.|..+..++.|..++..|.+|.+..+=. +.|+.+-... ...-.+..++|+|+. .+|.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 4667888999999999999986655421 2333221111 111235567999976 5777
Q ss_pred EEeCCCcEEEEEccC
Q 013184 337 TGNQDKTCRVWDVRN 351 (448)
Q Consensus 337 s~~~d~~i~iwd~~~ 351 (448)
.-+.|.+||+|+...
T Consensus 185 iL~sdnviRiy~lS~ 199 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSE 199 (741)
T ss_pred EEecCcEEEEEecCC
Confidence 788899999999865
No 482
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=82.56 E-value=5.4 Score=24.22 Aligned_cols=30 Identities=17% Similarity=0.381 Sum_probs=19.4
Q ss_pred cCCCcEEEEEEcCCCCEEEEEe-CC--CcEEEE
Q 013184 318 GHLDFSFASAWHPDGRIFATGN-QD--KTCRVW 347 (448)
Q Consensus 318 ~h~~~v~~~~~~p~g~~l~s~~-~d--~~i~iw 347 (448)
.....-...+|+|||++|+-++ .+ |...||
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3445667889999999776654 44 566555
No 483
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=82.23 E-value=44 Score=31.26 Aligned_cols=170 Identities=14% Similarity=0.104 Sum_probs=93.3
Q ss_pred CEEEEEeCCCeEEEEEcCCCCc---eeEEEeec-CCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEeec
Q 013184 202 NLLIAGGFQGELICKYLDQPGV---SFCSRTTY-DENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFSF 277 (448)
Q Consensus 202 ~~lvsg~~dg~i~vw~~~~~~~---~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~ 277 (448)
..++.++.+|+|.-|...-... ........ ....+...+++.....+..+.++--..++|.+||-.=.++...-.+
T Consensus 101 a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F 180 (336)
T TIGR03118 101 SRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSF 180 (336)
T ss_pred eeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCc
Confidence 4578899999999998543322 11111211 2345556677754444554445555688999998542222100001
Q ss_pred CCCeeEEEECC------CCCEEEE-------------EecCCcEEEEECCCCceeEeee--cCCCcEEEEEEcC------
Q 013184 278 PWPVNHTSLSP------DGKLLVI-------------VGDNPEGILVDSQTGKAIMPLC--GHLDFSFASAWHP------ 330 (448)
Q Consensus 278 ~~~v~~~~~sp------~~~~l~~-------------~~~d~~i~i~d~~~~~~~~~l~--~h~~~v~~~~~~p------ 330 (448)
..+-.-.-+.| .++++++ +..-|.|-++|+ .|+.++++. +.....+.++..|
T Consensus 181 ~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~ 259 (336)
T TIGR03118 181 IDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFGSL 259 (336)
T ss_pred cCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhCCC
Confidence 11100001111 1222222 334468888985 477777774 3445556777765
Q ss_pred CCCEEEEEeCCCcEEEEEccCCCcceEEEccCCC------CeEEEEEcC
Q 013184 331 DGRIFATGNQDKTCRVWDVRNLSKSVAVLKGNLG------AIRSIRFTS 373 (448)
Q Consensus 331 ~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~------~v~~l~~sp 373 (448)
.|.+|+---.||+|..+|..+ +..+-.+....+ .++.|.|..
T Consensus 260 sg~lLVGNFGDG~InaFD~~s-G~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 260 SGALLVGNFGDGTINAYDPQS-GAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CCCeEEeecCCceeEEecCCC-CceeeeecCCCCCeEEecCeEEeeeCC
Confidence 345555555699999999875 665555554332 456677754
No 484
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=81.76 E-value=9.2 Score=39.47 Aligned_cols=36 Identities=14% Similarity=0.230 Sum_probs=27.5
Q ss_pred CeEEEEEcC----CCCEEEEEeCCCeEEEEECCCCceeee
Q 013184 365 AIRSIRFTS----DGNFMAMAEPADFVHVYDAKNGFEKEQ 400 (448)
Q Consensus 365 ~v~~l~~sp----~g~~l~s~~~d~~v~vwd~~~~~~~~~ 400 (448)
.+..+++++ +..+|++.+.|+.+++||+.+++++..
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~ 255 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLAT 255 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEE
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEE
Confidence 455666666 668999999999999999999988543
No 485
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=81.53 E-value=21 Score=32.32 Aligned_cols=125 Identities=15% Similarity=0.133 Sum_probs=66.1
Q ss_pred cEEEEECCCCceeEeeec-CCCcEEEEEEcCCCCEEEEEeC-C--CcEEEEEccC-CCcce-EEEcc---CCCCeEEEEE
Q 013184 301 EGILVDSQTGKAIMPLCG-HLDFSFASAWHPDGRIFATGNQ-D--KTCRVWDVRN-LSKSV-AVLKG---NLGAIRSIRF 371 (448)
Q Consensus 301 ~i~i~d~~~~~~~~~l~~-h~~~v~~~~~~p~g~~l~s~~~-d--~~i~iwd~~~-~~~~~-~~~~~---~~~~v~~l~~ 371 (448)
.-.+||+.+++... +.. ......+-++-|||++|.+|+. + ..+|+++... ...+- ..... ..-+-.++.-
T Consensus 47 ~s~~yD~~tn~~rp-l~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~ 125 (243)
T PF07250_consen 47 HSVEYDPNTNTFRP-LTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATT 125 (243)
T ss_pred EEEEEecCCCcEEe-ccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceE
Confidence 35579988876532 322 2222333467899999999875 2 3588887643 11111 11110 1112233444
Q ss_pred cCCCCEEEEEeCCC-eEEEEECCCC-ceeee--eec------CcCceEEEEEccCCCeEEEEEec
Q 013184 372 TSDGNFMAMAEPAD-FVHVYDAKNG-FEKEQ--EID------FFGEISGMTFSPDTEALFIGVWD 426 (448)
Q Consensus 372 sp~g~~l~s~~~d~-~v~vwd~~~~-~~~~~--~~~------~~~~v~~~~fspdg~~L~~~~~D 426 (448)
-|||+.|+.|+... +.-+|.-... ..... +.. ....---+...|+|+.++.+..+
T Consensus 126 L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~ 190 (243)
T PF07250_consen 126 LPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG 190 (243)
T ss_pred CCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC
Confidence 57999999998775 3444543211 11111 111 11123356678999998887643
No 486
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=81.34 E-value=62 Score=32.40 Aligned_cols=54 Identities=22% Similarity=0.205 Sum_probs=36.8
Q ss_pred CCeeEEEECCCCCEEEEEecCCcEEEEECCCCce--eEeee-----cCCCcEEEEEEcCCC
Q 013184 279 WPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKA--IMPLC-----GHLDFSFASAWHPDG 332 (448)
Q Consensus 279 ~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~--~~~l~-----~h~~~v~~~~~~p~g 332 (448)
...+.++|.|+|++|++--..|.|++++..++.. +..+. ........|+++|+-
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 3457889999998776655568999998665432 22121 125668899999874
No 487
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=81.20 E-value=56 Score=31.81 Aligned_cols=40 Identities=25% Similarity=0.294 Sum_probs=20.5
Q ss_pred cEEEEecCCceEEEEee-cCCCee-EEEEC-CCCCEEEEEecC
Q 013184 260 GVRDFDMERFQLSKHFS-FPWPVN-HTSLS-PDGKLLVIVGDN 299 (448)
Q Consensus 260 ~v~iwd~~~~~~~~~~~-~~~~v~-~~~~s-p~~~~l~~~~~d 299 (448)
.+..||+.+.+....-. .+.+.. +.+.. -++++.+.|+.+
T Consensus 107 ~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 107 DVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred cEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence 47788888766544321 112211 12222 367777777753
No 488
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=80.92 E-value=69 Score=33.67 Aligned_cols=148 Identities=24% Similarity=0.226 Sum_probs=84.8
Q ss_pred EeecCCCeeEEEECCCCCEEEEEecCC----cEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEe------CCCc
Q 013184 274 HFSFPWPVNHTSLSPDGKLLVIVGDNP----EGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGN------QDKT 343 (448)
Q Consensus 274 ~~~~~~~v~~~~~sp~~~~l~~~~~d~----~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~------~d~~ 343 (448)
...+...+..+.|+|+|..++..+.++ .+.+.+.. + .+..+...+....|+|.|+.++... .++.
T Consensus 55 ~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~-g----~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~ 129 (620)
T COG1506 55 LLTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVG-G----LITKTAFGVSDARWSPDGDRIAFLTAEGASKRDGG 129 (620)
T ss_pred ccccCCcccccccCCCCCEEEEEeccCCCcceEEEEecC-C----ceeeeecccccceeCCCCCeEEEEecccccccCCc
Confidence 344667788889999999999887333 23344433 3 2334556677788999998777621 1222
Q ss_pred -------EEEEEccCC--Cc---------ceEEEccCCCCeEEEEEcCCCCEEEEEeCCC-------eEEEEECCCCcee
Q 013184 344 -------CRVWDVRNL--SK---------SVAVLKGNLGAIRSIRFTSDGNFMAMAEPAD-------FVHVYDAKNGFEK 398 (448)
Q Consensus 344 -------i~iwd~~~~--~~---------~~~~~~~~~~~v~~l~~sp~g~~l~s~~~d~-------~v~vwd~~~~~~~ 398 (448)
+.+|..... .. ...........+....++++++.++....+. ...++...++ .+
T Consensus 130 ~~~~~~~~~~~~~~~g~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 208 (620)
T COG1506 130 DHLFVDRLPVWFDGRGGERSDLYVVDIESKLIKLGLGNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIEGNG-EL 208 (620)
T ss_pred eeeeecccceeecCCCCcccceEEEccCcccccccCCCCceeeeeeCCCCceeEEeeeccccCCceEeeEEEecCCC-ce
Confidence 223332221 01 1112222334566666777677777665443 2334433333 33
Q ss_pred eeeecCcCceEEEEEccCCCeEEEEEecC
Q 013184 399 EQEIDFFGEISGMTFSPDTEALFIGVWDR 427 (448)
Q Consensus 399 ~~~~~~~~~v~~~~fspdg~~L~~~~~D~ 427 (448)
.........+..+.|.++|+.++..+...
T Consensus 209 ~~~~~~~~~~~~~~~~~~gk~~~~~~~~~ 237 (620)
T COG1506 209 ESLTPGEGSISKLAFDADGKSIALLGTES 237 (620)
T ss_pred EEEcCCCceeeeeeeCCCCCeeEEeccCC
Confidence 44445556799999999999776655443
No 489
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=80.72 E-value=10 Score=37.06 Aligned_cols=148 Identities=18% Similarity=0.162 Sum_probs=86.8
Q ss_pred EEecCCEEEEEeCCCeEEEEEcCCCCceeEEEeecC-CCCc---ee-eEEEEeCCCCCeeEEEEeCCCcEEEE-ecCC-c
Q 013184 197 LAVRDNLLIAGGFQGELICKYLDQPGVSFCSRTTYD-ENAI---TN-AVEIYNSPSGGIHFMASNNDCGVRDF-DMER-F 269 (448)
Q Consensus 197 l~~~~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~-~~~~---~~-~v~~~~~~~~~~~l~s~s~dg~v~iw-d~~~-~ 269 (448)
++.+++.|..-+. .++.++.+.+...... ++... .+.. +. .+.+ -.|+..+.+++.||.|.-| |... +
T Consensus 228 L~Pdg~~LYv~~g-~~~~v~~L~~r~l~~r-kl~~dspg~~~~~Vte~l~l---L~Gg~SLLv~~~dG~vsQWFdvr~~~ 302 (733)
T COG4590 228 LTPDGKTLYVRTG-SELVVALLDKRSLQIR-KLVDDSPGDSRHQVTEQLYL---LSGGFSLLVVHEDGLVSQWFDVRRDG 302 (733)
T ss_pred ECCCCCEEEEecC-CeEEEEeecccccchh-hhhhcCCCchHHHHHHHHHH---HhCceeEEEEcCCCceeeeeeeecCC
Confidence 3448887776655 6788888876653322 22212 1111 11 1111 2355578888999999888 4432 2
Q ss_pred e----EEEEee-cCCCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeCCCcE
Q 013184 270 Q----LSKHFS-FPWPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQDKTC 344 (448)
Q Consensus 270 ~----~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~d~~i 344 (448)
+ .++.++ .+.++..+.--.+.+-++.-..+|++.++.....+.+.. +.--..+.-+++||++.++++-.+ |.+
T Consensus 303 ~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~-~~~~~~~~~~~~Sp~~~~Ll~e~~-gki 380 (733)
T COG4590 303 QPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLF-ERAYQAPQLVAMSPNQAYLLSEDQ-GKI 380 (733)
T ss_pred CCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceeh-hhhhcCcceeeeCcccchheeecC-Cce
Confidence 2 223333 234455444344556677778888888876554443321 212234566899999999987654 569
Q ss_pred EEEEccC
Q 013184 345 RVWDVRN 351 (448)
Q Consensus 345 ~iwd~~~ 351 (448)
+++.+.+
T Consensus 381 ~~~~l~N 387 (733)
T COG4590 381 RLAQLEN 387 (733)
T ss_pred EEEEecC
Confidence 9998876
No 490
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.91 E-value=30 Score=36.22 Aligned_cols=100 Identities=21% Similarity=0.287 Sum_probs=58.8
Q ss_pred CCeeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecC-CCcEEEEEEcCCCCEEEEEeCCCcEEEEEccCCCcceE
Q 013184 279 WPVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGH-LDFSFASAWHPDGRIFATGNQDKTCRVWDVRNLSKSVA 357 (448)
Q Consensus 279 ~~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h-~~~v~~~~~~p~g~~l~s~~~d~~i~iwd~~~~~~~~~ 357 (448)
..+..+..||+.++|+.-...|.|.+.+....+....+... ..+...++|. +.|..+..|..+-
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wc---------gndaVvl~~e~~l------ 281 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWC---------GNDAVVLSWEVNL------ 281 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceee---------cCCceEEEEeeeE------
Confidence 56788999999999999999999999988777666555421 1222244553 4445556665431
Q ss_pred EEccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 013184 358 VLKGNLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGF 396 (448)
Q Consensus 358 ~~~~~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~ 396 (448)
.+.+..+. .+.|--+-..++++..|| |+|+.-.+-+
T Consensus 282 ~lvgp~gd--~V~f~yd~t~~l~~E~DG-VRI~t~t~~E 317 (829)
T KOG2280|consen 282 MLVGPPGD--SVQFYYDETAILSAEVDG-VRIITSTSHE 317 (829)
T ss_pred EEEcCCCC--ccccccCCCceeeeccCe-eEEeccchHH
Confidence 11111111 122322333346667777 7777754433
No 491
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=79.86 E-value=62 Score=31.50 Aligned_cols=28 Identities=11% Similarity=0.127 Sum_probs=17.8
Q ss_pred EEEEecCCEEEEEeCCC-----------eEEEEEcCCCC
Q 013184 195 STLAVRDNLLIAGGFQG-----------ELICKYLDQPG 222 (448)
Q Consensus 195 ~~l~~~~~~lvsg~~dg-----------~i~vw~~~~~~ 222 (448)
.....++.+.+.||..+ .+.+||..+..
T Consensus 79 ~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~ 117 (376)
T PRK14131 79 VAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNS 117 (376)
T ss_pred eEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCE
Confidence 34445888888888653 35566766554
No 492
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=79.79 E-value=11 Score=28.18 Aligned_cols=65 Identities=20% Similarity=0.258 Sum_probs=0.0
Q ss_pred eEEEECCC-CCEEEE-----------------EecCCcEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEE--eCC
Q 013184 282 NHTSLSPD-GKLLVI-----------------VGDNPEGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATG--NQD 341 (448)
Q Consensus 282 ~~~~~sp~-~~~l~~-----------------~~~d~~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~--~~d 341 (448)
+.+++.++ |...++ +..+|.+..||+.+++....+. .....+.|+.+||+..++.+ ..-
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~-~L~fpNGVals~d~~~vlv~Et~~~ 79 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLD-GLYFPNGVALSPDESFVLVAETGRY 79 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEE-EESSEEEEEE-TTSSEEEEEEGGGT
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehh-CCCccCeEEEcCCCCEEEEEeccCc
Q ss_pred CcEEEE
Q 013184 342 KTCRVW 347 (448)
Q Consensus 342 ~~i~iw 347 (448)
...|.|
T Consensus 80 Ri~ryw 85 (89)
T PF03088_consen 80 RILRYW 85 (89)
T ss_dssp EEEEEE
T ss_pred eEEEEE
No 493
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=79.14 E-value=1e+02 Score=33.46 Aligned_cols=208 Identities=13% Similarity=0.159 Sum_probs=0.0
Q ss_pred EEcCCCCceeEEEee-----cCCCCceeeEEEEeCCCCCeeEEEEeCCCc----------EEEEecCCceEEEEe-ecCC
Q 013184 216 KYLDQPGVSFCSRTT-----YDENAITNAVEIYNSPSGGIHFMASNNDCG----------VRDFDMERFQLSKHF-SFPW 279 (448)
Q Consensus 216 w~~~~~~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~----------v~iwd~~~~~~~~~~-~~~~ 279 (448)
||.......-...+. ......+..+++..-..|..+-++.-.... +++--+......... ....
T Consensus 1 ~DP~~~~Lla~g~i~~~~~~r~~~~~~~i~A~asGesg~~L~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~i~~~~ 80 (765)
T PF10214_consen 1 YDPTVGSLLAIGEIQDVSDLRSGSRPVPILAFASGESGSVLRLSRLDEEEWSWGNNDDASLRVPTIDPELSGAWSIDDGS 80 (765)
T ss_pred CCCCcCccEEEEEeeecccCCCCCceeEEEEEecCCCCCeeEEEEecccccccccccccccccCCCCccccceeEcCCCC
Q ss_pred CeeEEEEC------CCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEE------------------EEEEcC-CCCE
Q 013184 280 PVNHTSLS------PDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSF------------------ASAWHP-DGRI 334 (448)
Q Consensus 280 ~v~~~~~s------p~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~------------------~~~~~p-~g~~ 334 (448)
+|..|+|. ......+.+-....+.|+...-.+.+.........+. .++|+| +.+.
T Consensus 81 PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~~~q 160 (765)
T PF10214_consen 81 PIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWDQRQ 160 (765)
T ss_pred CeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCccce
Q ss_pred EEEEeCCCcEEEEEc----cCCCcceEEEccCCCCe------E----EEEEcCCCCEEEEEeCCCeEEEEECCCCce--e
Q 013184 335 FATGNQDKTCRVWDV----RNLSKSVAVLKGNLGAI------R----SIRFTSDGNFMAMAEPADFVHVYDAKNGFE--K 398 (448)
Q Consensus 335 l~s~~~d~~i~iwd~----~~~~~~~~~~~~~~~~v------~----~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~--~ 398 (448)
||+....|...||++ +.....+.....+.+.| . .+.|.++-..|++++... +.++|+.+... .
T Consensus 161 ~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~~-l~~~d~~~~~~~~~ 239 (765)
T PF10214_consen 161 FAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRSK-LMLIDFESNWQTEY 239 (765)
T ss_pred EEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCCc-eEEEECCCCCccch
Q ss_pred eeeecCcCceEEEEEccC--CCeEEEEE
Q 013184 399 EQEIDFFGEISGMTFSPD--TEALFIGV 424 (448)
Q Consensus 399 ~~~~~~~~~v~~~~fspd--g~~L~~~~ 424 (448)
.........|..+.-+|. +..++..+
T Consensus 240 l~~~~~~~~IlDv~~~~~~~~~~FiLTs 267 (765)
T PF10214_consen 240 LVTAKTWSWILDVKRSPDNPSHVFILTS 267 (765)
T ss_pred hccCCChhheeeEEecCCccceEEEEec
No 494
>PRK13614 lipoprotein LpqB; Provisional
Probab=78.97 E-value=78 Score=32.77 Aligned_cols=141 Identities=11% Similarity=0.137 Sum_probs=78.7
Q ss_pred CeeEEEECCCCCEEEEEecCCcEEEEECCCCceeE-eeecCCCcEEEEEEcCCCCEEEEEeCCC--cEEEEEccCCCcc-
Q 013184 280 PVNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIM-PLCGHLDFSFASAWHPDGRIFATGNQDK--TCRVWDVRNLSKS- 355 (448)
Q Consensus 280 ~v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~-~l~~h~~~v~~~~~~p~g~~l~s~~~d~--~i~iwd~~~~~~~- 355 (448)
.+.+++.++++..++....++. .+|-...+.... .+.+ ..++.-.|.++| .+.+.-.+. .|....-......
T Consensus 344 ~~~s~avS~~g~~~A~~~~~~~-~l~~~~~g~~~~~~~~g--~~Lt~PS~d~~g-~vWtv~~g~~~~vv~~~~~g~~~~~ 419 (573)
T PRK13614 344 GPASPAESPVSQTVAFLNGSRT-TLYTVSPGQPARALTSG--STLTRPSFSPQD-WVWTAGPGGNGRIVAYRPTGVAEGA 419 (573)
T ss_pred cccceeecCCCceEEEecCCCc-EEEEecCCCcceeeecC--CCccCCcccCCC-CEEEeeCCCCceEEEEecCCCcccc
Confidence 5778899999999988877662 333222233332 2333 235667888887 666655433 4433332111110
Q ss_pred -----eEEEccCCC-CeEEEEEcCCCCEEEE-EeCCCe--EEEEEC---CCCc--eeeee--ecCcCceEEEEEccCCCe
Q 013184 356 -----VAVLKGNLG-AIRSIRFTSDGNFMAM-AEPADF--VHVYDA---KNGF--EKEQE--IDFFGEISGMTFSPDTEA 419 (448)
Q Consensus 356 -----~~~~~~~~~-~v~~l~~sp~g~~l~s-~~~d~~--v~vwd~---~~~~--~~~~~--~~~~~~v~~~~fspdg~~ 419 (448)
........+ .|..++.|+||-.++. .+.+|. |+|=-+ ..|. .+... ......+.+++|..++..
T Consensus 420 ~~~~~~v~~~~l~g~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~G~P~~L~~~~~~~~~~~~~sl~W~~~~sl 499 (573)
T PRK13614 420 QAPTVTLTADWLAGRTVKELRVSREGVRALVISEQNGKSRVQVAGIVRNEDGTPRELTAPITLAADSDADTGAWVGDSTV 499 (573)
T ss_pred cccceeecccccCCCeeEEEEECCCccEEEEEEEeCCccEEEEEEEEeCCCCCeEEccCceecccCCCcceeEEcCCCEE
Confidence 011122333 4999999999976655 334444 665332 3343 11110 122367899999998886
Q ss_pred EEEEE
Q 013184 420 LFIGV 424 (448)
Q Consensus 420 L~~~~ 424 (448)
++.+.
T Consensus 500 ~V~~~ 504 (573)
T PRK13614 500 VVTKA 504 (573)
T ss_pred EEEec
Confidence 66653
No 495
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=78.65 E-value=81 Score=32.15 Aligned_cols=220 Identities=12% Similarity=0.076 Sum_probs=107.5
Q ss_pred eeeEEEEec-CCEEEEEeCCCeEEEEEcCCCCceeEEEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCce
Q 013184 192 TQVSTLAVR-DNLLIAGGFQGELICKYLDQPGVSFCSRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQ 270 (448)
Q Consensus 192 ~~i~~l~~~-~~~lvsg~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~ 270 (448)
..|..+..| ...+-.|+..|-.+ ..+...+..++..- -+........+....+|+ +-+++.++.+++-+-+ ..
T Consensus 247 ~~I~ll~qD~qG~lWiGTenGl~r-~~l~rq~Lq~~~~~--~~l~~S~vnsL~~D~dGs--LWv~t~~giv~~~~a~-w~ 320 (671)
T COG3292 247 GNILLLVQDAQGELWIGTENGLWR-TRLPRQGLQIPLSK--MHLGVSTVNSLWLDTDGS--LWVGTYGGIVRYLTAD-WK 320 (671)
T ss_pred hheeeeecccCCCEEEeeccccee-EecCCCCccccccc--cCCccccccceeeccCCC--EeeeccCceEEEecch-hh
Confidence 356666553 34667777776432 23444444433322 222232333344466664 7777777766654432 22
Q ss_pred EEEEee-cCC-CeeEEEECC--CCCEEEEEecCCcEEEEECCCCceeEeeec-CCCcEEEEEEcCCCCEEEEEeCCCcEE
Q 013184 271 LSKHFS-FPW-PVNHTSLSP--DGKLLVIVGDNPEGILVDSQTGKAIMPLCG-HLDFSFASAWHPDGRIFATGNQDKTCR 345 (448)
Q Consensus 271 ~~~~~~-~~~-~v~~~~~sp--~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~-h~~~v~~~~~~p~g~~l~s~~~d~~i~ 345 (448)
....+. .++ .+...+.+| .+..+-.....+.+.+-+..+|..++.... ...-|+.+++...|+ +..|+...-+.
T Consensus 321 ~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg~nit~~~~d~~g~-lWlgs~q~GLs 399 (671)
T COG3292 321 RMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLRGMNITTTLEDSRGR-LWLGSMQNGLS 399 (671)
T ss_pred heeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeeccccccchhhhccCCc-EEEEecccchh
Confidence 222222 111 122222233 222233333334555566666666554322 224455666666554 44455543366
Q ss_pred EEEccCCCcceEEEcc-CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeee--ecC---cCceEEEEEccCCCe
Q 013184 346 VWDVRNLSKSVAVLKG-NLGAIRSIRFTSDGNFMAMAEPADFVHVYDAKNGFEKEQE--IDF---FGEISGMTFSPDTEA 419 (448)
Q Consensus 346 iwd~~~~~~~~~~~~~-~~~~v~~l~~sp~g~~l~s~~~d~~v~vwd~~~~~~~~~~--~~~---~~~v~~~~fspdg~~ 419 (448)
.|+..+.........+ ..++|..+.=.|+++ |..|+.+|.++. +.+.++....+ ..| .+.|..+.+-|+|+.
T Consensus 400 rl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk~-~pe~~~v~n~ln~~~~~l~~s~~~~lg~~~~g~L 477 (671)
T COG3292 400 RLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVKR-DPESGRVLNLLNPGSHGLDGSRVEQLGLGPDGRL 477 (671)
T ss_pred hhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeEec-CccccchhcccccccCcCCcchhhhhccCCCCce
Confidence 6776542222222222 345788887788888 778888885443 33333222211 112 234667778888764
Q ss_pred E
Q 013184 420 L 420 (448)
Q Consensus 420 L 420 (448)
=
T Consensus 478 w 478 (671)
T COG3292 478 W 478 (671)
T ss_pred E
Confidence 3
No 496
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.11 E-value=96 Score=32.71 Aligned_cols=173 Identities=12% Similarity=0.045 Sum_probs=82.8
Q ss_pred eeEEEEe-cCCEEEEEeCCCeEEEEEcCCCCceeEEE-eecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEe-cCCc
Q 013184 193 QVSTLAV-RDNLLIAGGFQGELICKYLDQPGVSFCSR-TTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFD-MERF 269 (448)
Q Consensus 193 ~i~~l~~-~~~~lvsg~~dg~i~vw~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd-~~~~ 269 (448)
.+-.|.+ +..-|++-..+|++.++++-......... .....+.+..+. +..+| +++-..+|.+.+.+ .+.
T Consensus 85 ~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~---~f~~G---Vavlt~~g~v~~i~~~~~- 157 (829)
T KOG2280|consen 85 ELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECR---FFHNG---VAVLTVSGQVILINGVEE- 157 (829)
T ss_pred CeeeecccCCceEEEEeccceEEEeecchhhhcccccccccccCceeEEE---EecCc---eEEEecCCcEEEEcCCCc-
Confidence 4678888 77889999999999999986544322100 111112233232 23344 23333344444433 322
Q ss_pred eEEEEee-cC---CCeeEEEECCCCC---EEEEEe-cCC-cEEEEECCCCceeEeeecCCCcEEEEEEcCCCCEEEEEeC
Q 013184 270 QLSKHFS-FP---WPVNHTSLSPDGK---LLVIVG-DNP-EGILVDSQTGKAIMPLCGHLDFSFASAWHPDGRIFATGNQ 340 (448)
Q Consensus 270 ~~~~~~~-~~---~~v~~~~~sp~~~---~l~~~~-~d~-~i~i~d~~~~~~~~~l~~h~~~v~~~~~~p~g~~l~s~~~ 340 (448)
...+..+ -+ -+-+|-...+++. .++-.. ..+ .+..-+....+ .+.+......+..+..||+.++|+--..
T Consensus 158 ~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q-~~~~~~~~~~~~ki~VS~n~~~laLyt~ 236 (829)
T KOG2280|consen 158 PKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQ-LHALSWPNSSVVKISVSPNRRFLALYTE 236 (829)
T ss_pred chhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceeccccc-ccccCCCCceEEEEEEcCCcceEEEEec
Confidence 1222222 01 1112322222221 111111 000 11111111122 1222222355778899999999999999
Q ss_pred CCcEEEEEccCCCcceEEEc--cCCCCeEEEEEcCCC
Q 013184 341 DKTCRVWDVRNLSKSVAVLK--GNLGAIRSIRFTSDG 375 (448)
Q Consensus 341 d~~i~iwd~~~~~~~~~~~~--~~~~~v~~l~~sp~g 375 (448)
.|.|.+-++.. .++...+. .|.. ...++|..+.
T Consensus 237 ~G~i~~vs~D~-~~~lce~~~~~~~~-p~qm~Wcgnd 271 (829)
T KOG2280|consen 237 TGKIWVVSIDL-SQILCEFNCTDHDP-PKQMAWCGND 271 (829)
T ss_pred CCcEEEEecch-hhhhhccCCCCCCc-hHhceeecCC
Confidence 99999888754 55544443 2222 2255665433
No 497
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=77.21 E-value=37 Score=27.50 Aligned_cols=107 Identities=13% Similarity=0.012 Sum_probs=63.2
Q ss_pred EEECCCCCEEEEEecCCcEEEEECCCC--------ceeEeeecCCCcEEEEEEcC-----CCCEEEEEeCCCcEEEEEcc
Q 013184 284 TSLSPDGKLLVIVGDNPEGILVDSQTG--------KAIMPLCGHLDFSFASAWHP-----DGRIFATGNQDKTCRVWDVR 350 (448)
Q Consensus 284 ~~~sp~~~~l~~~~~d~~i~i~d~~~~--------~~~~~l~~h~~~v~~~~~~p-----~g~~l~s~~~d~~i~iwd~~ 350 (448)
-.|......|+.++.-++|.|.+.... ..+..|. -...|++++-.| ....|+.|+.. ++..||+.
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~t-~llaYDV~ 81 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQT-SLLAYDVE 81 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEeccc-eEEEEEcc
Confidence 345555557888888889999987533 2334443 455677775433 23467777665 59999997
Q ss_pred CCCcceEEEccCCCCeEEEEEcCC---CCEEEEEeCCCeEEEEECCC
Q 013184 351 NLSKSVAVLKGNLGAIRSIRFTSD---GNFMAMAEPADFVHVYDAKN 394 (448)
Q Consensus 351 ~~~~~~~~~~~~~~~v~~l~~sp~---g~~l~s~~~d~~v~vwd~~~ 394 (448)
+...... +.-...|+++.+-.- ..-|+..+.+..|.-||..-
T Consensus 82 ~N~d~Fy--ke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G 126 (136)
T PF14781_consen 82 NNSDLFY--KEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEG 126 (136)
T ss_pred cCchhhh--hhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCC
Confidence 6333322 222355777766321 23344445566788888543
No 498
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=76.62 E-value=11 Score=33.25 Aligned_cols=53 Identities=15% Similarity=0.119 Sum_probs=36.9
Q ss_pred CEEEEEeCCCeEEEEECCC-CceeeeeecCcCceEEEEEccCCCeEEEEEecCC
Q 013184 376 NFMAMAEPADFVHVYDAKN-GFEKEQEIDFFGEISGMTFSPDTEALFIGVWDRT 428 (448)
Q Consensus 376 ~~l~s~~~d~~v~vwd~~~-~~~~~~~~~~~~~v~~~~fspdg~~L~~~~~D~~ 428 (448)
..|..+...+.|.+|++.. ...+......-+.|..+.++..|+||++-=.+..
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~ 82 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNK 82 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecC
Confidence 5555556677899999983 2222333334588999999999999998744433
No 499
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=75.51 E-value=73 Score=29.98 Aligned_cols=70 Identities=27% Similarity=0.447 Sum_probs=53.2
Q ss_pred eeEEEECCCCCEEEEEecCCcEEEEECCCCceeEeeecCCCcEE-----EEEEcCCCCEEEEEeCCCcEEEEEcc
Q 013184 281 VNHTSLSPDGKLLVIVGDNPEGILVDSQTGKAIMPLCGHLDFSF-----ASAWHPDGRIFATGNQDKTCRVWDVR 350 (448)
Q Consensus 281 v~~~~~sp~~~~l~~~~~d~~i~i~d~~~~~~~~~l~~h~~~v~-----~~~~~p~g~~l~s~~~d~~i~iwd~~ 350 (448)
|+++...++|.+|+++-.-..|.+.|.++|+.+..+.|....-+ ..+|-.+-+.+-.+..+++|.++|-.
T Consensus 146 iNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~ 220 (299)
T PF14269_consen 146 INSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNA 220 (299)
T ss_pred eeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCC
Confidence 78888888999999988888999999999999999876622211 24444455566566778889999864
No 500
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=74.63 E-value=13 Score=36.45 Aligned_cols=159 Identities=13% Similarity=0.044 Sum_probs=90.4
Q ss_pred ccceeeeCCCCeEEEecCCeEEEEecCCCc--eeEEEec-CCCCCCCCCCCCCcccCCcceeeE-E--EEecCCEEEEEe
Q 013184 135 LRNLVWSTSKHDVYLMSHFSIVHWSSLSSK--RTEVLDV-SGHVAPCEKHPGNLLEGFTQTQVS-T--LAVRDNLLIAGG 208 (448)
Q Consensus 135 ~r~l~~~~~~~~v~~~~~~~v~~w~~~~~~--~~~~~~~-~gh~~p~~~~~~~~~~~~~~~~i~-~--l~~~~~~lvsg~ 208 (448)
+..++..+.+..+|+-+...+.++...+.. ..++.+. .|.. ...|+ + +-..+.-|.+++
T Consensus 223 v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~---------------~~~Vte~l~lL~Gg~SLLv~~ 287 (733)
T COG4590 223 VSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDS---------------RHQVTEQLYLLSGGFSLLVVH 287 (733)
T ss_pred hHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCch---------------HHHHHHHHHHHhCceeEEEEc
Confidence 445677888888888888888888764432 2233222 1100 01222 1 222677789999
Q ss_pred CCCeEEEEEcCCCCce--eE-EEeecCCCCceeeEEEEeCCCCCeeEEEEeCCCcEEEEecCCceEEEEeecCCCeeEEE
Q 013184 209 FQGELICKYLDQPGVS--FC-SRTTYDENAITNAVEIYNSPSGGIHFMASNNDCGVRDFDMERFQLSKHFSFPWPVNHTS 285 (448)
Q Consensus 209 ~dg~i~vw~~~~~~~~--~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~v~~~~ 285 (448)
.||-|.-|.-...+.. +. .+...-..+.+ .+.-..+..+-+++-+..|++.++.....+.+-.-..-..+..++
T Consensus 288 ~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~---~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~~ 364 (733)
T COG4590 288 EDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEV---QFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLVA 364 (733)
T ss_pred CCCceeeeeeeecCCCCcceeeeccccCcccc---eeeccccccceEEEEcCCCceeeeecccCcceehhhhhcCcceee
Confidence 9999998864332211 11 11111111222 222222334457777888888888765544433333334677899
Q ss_pred ECCCCCEEEEEecCCcEEEEECCCCce
Q 013184 286 LSPDGKLLVIVGDNPEGILVDSQTGKA 312 (448)
Q Consensus 286 ~sp~~~~l~~~~~d~~i~i~d~~~~~~ 312 (448)
+||.+.++++- +.|.++++.+.+..+
T Consensus 365 ~Sp~~~~Ll~e-~~gki~~~~l~Nr~P 390 (733)
T COG4590 365 MSPNQAYLLSE-DQGKIRLAQLENRNP 390 (733)
T ss_pred eCcccchheee-cCCceEEEEecCCCC
Confidence 99998888754 446788887766543
Done!